#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
IclR	PF01614.18	gi|336251751|ref|YP_004585719.1|	-	3.5e-28	98.0	0.2	8.6e-28	96.7	0.0	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251751|ref|YP_004585719.1|	-	1.2e-10	41.0	0.0	2.4e-10	40.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336251751|ref|YP_004585719.1|	-	3.5e-08	33.2	0.0	6.4e-08	32.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251751|ref|YP_004585719.1|	-	4.4e-07	29.7	0.0	2e-06	27.6	0.1	2.0	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|336251751|ref|YP_004585719.1|	-	6.7e-07	29.1	0.1	2.4e-06	27.4	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336251751|ref|YP_004585719.1|	-	2.1e-06	27.2	0.0	3.8e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336251751|ref|YP_004585719.1|	-	3.1e-05	24.0	0.1	6.5e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251751|ref|YP_004585719.1|	-	0.0001	22.2	0.2	0.00029	20.7	0.2	1.8	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|336251751|ref|YP_004585719.1|	-	0.00018	21.3	0.1	0.001	18.9	0.0	2.2	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|336251751|ref|YP_004585719.1|	-	0.0024	17.6	0.0	0.005	16.6	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
B-block_TFIIIC	PF04182.12	gi|336251751|ref|YP_004585719.1|	-	0.0034	17.5	0.0	0.0052	16.9	0.0	1.5	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_23	PF13384.6	gi|336251751|ref|YP_004585719.1|	-	0.0039	16.9	0.0	0.011	15.5	0.0	1.7	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_27	PF13463.6	gi|336251751|ref|YP_004585719.1|	-	0.0045	17.5	0.2	0.02	15.4	0.1	2.1	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|336251751|ref|YP_004585719.1|	-	0.0053	17.1	0.1	0.016	15.6	0.1	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
RepL	PF05732.11	gi|336251751|ref|YP_004585719.1|	-	0.006	16.0	0.0	0.011	15.2	0.0	1.5	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
RNA_lig_T4_1	PF09511.10	gi|336251751|ref|YP_004585719.1|	-	0.0088	15.9	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	1	RNA	ligase
HTH_DeoR	PF08220.12	gi|336251751|ref|YP_004585719.1|	-	0.025	14.3	0.1	0.065	13.0	0.1	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Mga	PF05043.13	gi|336251751|ref|YP_004585719.1|	-	0.039	14.5	0.1	1.6	9.4	0.0	2.5	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
DUF3489	PF11994.8	gi|336251751|ref|YP_004585719.1|	-	0.039	14.0	0.1	0.07	13.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
GerE	PF00196.19	gi|336251751|ref|YP_004585719.1|	-	0.046	13.3	0.0	0.13	11.9	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Penicillinase_R	PF03965.16	gi|336251751|ref|YP_004585719.1|	-	0.051	13.9	0.0	0.35	11.2	0.0	2.3	2	0	0	2	2	2	0	Penicillinase	repressor
UPF0122	PF04297.14	gi|336251751|ref|YP_004585719.1|	-	0.061	13.6	0.6	1.2	9.4	0.0	2.8	3	0	0	3	3	3	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Fe_dep_repress	PF01325.19	gi|336251751|ref|YP_004585719.1|	-	0.062	13.5	0.1	0.21	11.8	0.0	1.9	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
CPSase_sm_chain	PF00988.22	gi|336251751|ref|YP_004585719.1|	-	0.069	13.0	0.1	0.23	11.3	0.0	1.8	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
HTH_40	PF14493.6	gi|336251751|ref|YP_004585719.1|	-	0.11	13.0	0.1	0.31	11.5	0.0	1.9	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|336251751|ref|YP_004585719.1|	-	0.12	12.8	0.1	0.24	11.9	0.1	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|336251751|ref|YP_004585719.1|	-	0.13	12.1	0.1	0.34	10.7	0.0	1.8	1	1	0	1	1	1	0	LexA	DNA	binding	domain
RDD	PF06271.12	gi|336251753|ref|YP_004585721.1|	-	5.4e-15	55.8	3.4	6.3e-15	55.6	3.4	1.1	1	0	0	1	1	1	1	RDD	family
TraP	PF07296.11	gi|336251753|ref|YP_004585721.1|	-	0.05	12.8	0.1	0.081	12.1	0.1	1.4	1	0	0	1	1	1	0	TraP	protein
EII-Sor	PF03609.14	gi|336251754|ref|YP_004585722.1|	-	0.0067	15.9	1.2	0.0067	15.9	1.2	1.6	2	0	0	2	2	2	1	PTS	system	sorbose-specific	iic	component
MASE1	PF05231.14	gi|336251754|ref|YP_004585722.1|	-	0.055	12.6	10.0	0.032	13.4	2.6	2.3	1	1	0	2	2	2	0	MASE1
DDE_Tnp_1	PF01609.21	gi|336251755|ref|YP_004585723.1|	-	8e-16	58.3	5.9	6.6e-15	55.3	5.9	2.1	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|336251755|ref|YP_004585723.1|	-	0.00018	21.4	0.1	0.00053	19.9	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_3	PF13612.6	gi|336251755|ref|YP_004585723.1|	-	0.00022	21.3	0.1	0.00034	20.6	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|336251755|ref|YP_004585723.1|	-	0.0096	16.2	0.7	0.024	14.8	0.4	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|336251755|ref|YP_004585723.1|	-	0.027	14.9	1.0	0.075	13.4	1.0	1.8	1	1	0	1	1	1	0	Transposase	DDE	domain
HrcA_DNA-bdg	PF03444.15	gi|336251756|ref|YP_004585724.1|	-	5.7e-27	93.2	0.0	8e-27	92.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|336251756|ref|YP_004585724.1|	-	2.6e-06	27.7	0.0	5.1e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|336251756|ref|YP_004585724.1|	-	4.2e-06	26.6	0.0	8.6e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|336251756|ref|YP_004585724.1|	-	1.6e-05	24.9	0.0	3e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251756|ref|YP_004585724.1|	-	0.0012	18.6	0.2	0.0035	17.2	0.1	1.8	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336251756|ref|YP_004585724.1|	-	0.0022	17.9	0.0	0.0066	16.3	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|336251756|ref|YP_004585724.1|	-	0.019	14.9	0.0	0.036	14.0	0.0	1.4	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_24	PF13412.6	gi|336251756|ref|YP_004585724.1|	-	0.036	13.6	0.0	0.069	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
LexA_DNA_bind	PF01726.16	gi|336251756|ref|YP_004585724.1|	-	0.061	13.1	0.1	0.11	12.3	0.1	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Dimerisation2	PF16864.5	gi|336251756|ref|YP_004585724.1|	-	0.068	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
HTH_IclR	PF09339.10	gi|336251756|ref|YP_004585724.1|	-	0.073	12.9	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Amidohydro_1	PF01979.20	gi|336251757|ref|YP_004585725.1|	-	1.3e-63	215.4	0.0	1.5e-63	215.2	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|336251757|ref|YP_004585725.1|	-	5.7e-11	42.6	1.2	9.1e-11	41.9	0.1	1.8	2	0	0	2	2	2	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|336251757|ref|YP_004585725.1|	-	0.00017	21.0	0.0	0.00029	20.3	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amino_oxidase	PF01593.24	gi|336251758|ref|YP_004585726.1|	-	6.9e-36	124.5	0.0	8.1e-36	124.3	0.0	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|336251758|ref|YP_004585726.1|	-	7.5e-14	51.7	0.0	1.8e-13	50.5	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336251758|ref|YP_004585726.1|	-	2.3e-05	24.1	0.3	0.0031	17.1	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|336251758|ref|YP_004585726.1|	-	0.0003	20.8	0.4	0.32	11.0	0.2	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|336251758|ref|YP_004585726.1|	-	0.0017	17.7	0.4	0.27	10.4	0.2	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336251758|ref|YP_004585726.1|	-	0.012	16.2	0.1	0.091	13.3	0.4	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|336251758|ref|YP_004585726.1|	-	0.012	14.8	0.1	0.021	14.0	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
FMO-like	PF00743.19	gi|336251758|ref|YP_004585726.1|	-	0.017	13.5	0.0	0.023	13.1	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
FAD_binding_2	PF00890.24	gi|336251758|ref|YP_004585726.1|	-	0.096	11.7	0.5	1.2	8.1	0.2	2.1	2	0	0	2	2	2	0	FAD	binding	domain
DUF3237	PF11578.8	gi|336251758|ref|YP_004585726.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3237)
3HCDH_N	PF02737.18	gi|336251758|ref|YP_004585726.1|	-	0.28	11.1	0.1	0.45	10.4	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Ferrochelatase	PF00762.19	gi|336251759|ref|YP_004585727.1|	-	9.3e-70	235.2	0.0	1.2e-69	234.9	0.0	1.0	1	0	0	1	1	1	1	Ferrochelatase
CbiX	PF01903.17	gi|336251759|ref|YP_004585727.1|	-	2.2e-06	27.9	0.2	0.00083	19.6	0.0	2.5	2	1	0	2	2	2	2	CbiX
Glyco_trans_4_4	PF13579.6	gi|336251759|ref|YP_004585727.1|	-	8.8e-06	26.2	0.1	0.00074	20.0	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Acetyltransf_8	PF13523.6	gi|336251759|ref|YP_004585727.1|	-	0.0013	18.5	1.5	0.0018	18.0	0.6	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Glyco_transf_4	PF13439.6	gi|336251759|ref|YP_004585727.1|	-	0.017	15.1	0.0	0.039	14.0	0.0	1.5	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
MutL_C	PF08676.11	gi|336251759|ref|YP_004585727.1|	-	0.16	11.7	0.1	2.4	7.9	0.0	2.6	4	0	0	4	4	4	0	MutL	C	terminal	dimerisation	domain
URO-D	PF01208.17	gi|336251760|ref|YP_004585728.1|	-	4.1e-111	371.5	0.0	4.5e-111	371.3	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
DUF934	PF06073.12	gi|336251760|ref|YP_004585728.1|	-	0.013	15.3	0.0	0.29	11.0	0.0	2.5	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF934)
Erythro_esteras	PF05139.14	gi|336251760|ref|YP_004585728.1|	-	0.054	13.3	0.0	0.086	12.6	0.0	1.3	1	0	0	1	1	1	0	Erythromycin	esterase
DUF4342	PF14242.6	gi|336251762|ref|YP_004585730.1|	-	0.051	13.6	8.3	0.1	12.6	0.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4342)
DUF2530	PF10745.9	gi|336251763|ref|YP_004585731.1|	-	0.21	11.8	6.5	1.1	9.5	1.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
DUF3040	PF11239.8	gi|336251763|ref|YP_004585731.1|	-	0.89	9.9	5.5	7.7	6.9	0.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF3040	PF11239.8	gi|336251764|ref|YP_004585732.1|	-	0.0087	16.3	0.6	0.022	15.0	0.6	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3040)
DUF1616	PF07760.11	gi|336251765|ref|YP_004585733.1|	-	2.2e-110	368.7	1.5	2.5e-110	368.5	1.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
CwsA	PF10814.8	gi|336251765|ref|YP_004585733.1|	-	0.24	11.6	1.1	7.9	6.7	0.1	2.3	2	0	0	2	2	2	0	Cell	wall	synthesis	protein	CwsA
ABC_tran	PF00005.27	gi|336251766|ref|YP_004585734.1|	-	4.5e-34	117.9	0.0	8.7e-34	117.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|336251766|ref|YP_004585734.1|	-	3.3e-15	56.5	6.2	4.5e-15	56.0	6.2	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|336251766|ref|YP_004585734.1|	-	0.00016	21.2	2.1	0.0021	17.6	1.0	2.3	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336251766|ref|YP_004585734.1|	-	0.0046	16.7	0.1	0.012	15.3	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|336251766|ref|YP_004585734.1|	-	0.0075	16.0	0.0	0.18	11.5	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|336251766|ref|YP_004585734.1|	-	0.0094	15.9	0.0	0.018	15.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_25	PF13481.6	gi|336251766|ref|YP_004585734.1|	-	0.017	14.7	0.0	0.16	11.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|336251766|ref|YP_004585734.1|	-	0.019	15.4	0.4	0.051	14.0	0.4	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251766|ref|YP_004585734.1|	-	0.023	15.0	3.5	0.15	12.4	0.5	3.2	2	2	0	2	2	2	0	AAA	domain
AAA_21	PF13304.6	gi|336251766|ref|YP_004585734.1|	-	0.04	13.7	0.5	0.21	11.4	0.0	2.2	2	1	0	3	3	3	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Synapsin_N	PF10581.9	gi|336251766|ref|YP_004585734.1|	-	0.048	13.6	1.7	0.31	11.0	0.0	2.8	3	0	0	3	3	3	0	Synapsin	N-terminal
ABC_ATPase	PF09818.9	gi|336251766|ref|YP_004585734.1|	-	0.06	12.1	0.0	0.12	11.2	0.0	1.4	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_18	PF13238.6	gi|336251766|ref|YP_004585734.1|	-	0.093	13.3	0.0	0.26	11.8	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|336251766|ref|YP_004585734.1|	-	0.13	12.0	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
YdjM	PF04307.14	gi|336251767|ref|YP_004585735.1|	-	5.7e-09	35.5	6.3	8.4e-09	35.0	6.3	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|336251767|ref|YP_004585735.1|	-	1.8	8.2	8.0	1.6	8.4	0.1	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4184)
PqqD	PF05402.12	gi|336251768|ref|YP_004585736.1|	-	8.8e-18	64.4	0.2	1.1e-17	64.0	0.2	1.1	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
DUF4777	PF16007.5	gi|336251768|ref|YP_004585736.1|	-	2.2e-05	24.6	0.1	3.2e-05	24.1	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4777)
Transglut_core3	PF13471.6	gi|336251769|ref|YP_004585737.1|	-	6.3e-17	61.6	0.0	8.2e-17	61.2	0.0	1.1	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Asn_synthase	PF00733.21	gi|336251770|ref|YP_004585738.1|	-	9.4e-46	157.1	0.1	1.3e-45	156.6	0.1	1.2	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.6	gi|336251770|ref|YP_004585738.1|	-	7.8e-27	93.6	0.0	1.3e-26	92.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|336251770|ref|YP_004585738.1|	-	7.9e-24	84.4	0.0	1.5e-23	83.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
DUF3700	PF12481.8	gi|336251770|ref|YP_004585738.1|	-	7.7e-05	22.3	0.0	0.00014	21.4	0.0	1.3	1	0	0	1	1	1	1	Aluminium	induced	protein
Hpr_kinase_C	PF07475.12	gi|336251772|ref|YP_004585740.1|	-	0.00032	20.3	0.0	0.00069	19.2	0.0	1.5	1	0	0	1	1	1	1	HPr	Serine	kinase	C-terminal	domain
AAA_28	PF13521.6	gi|336251772|ref|YP_004585740.1|	-	0.0062	16.8	0.0	0.015	15.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336251772|ref|YP_004585740.1|	-	0.0094	16.3	0.0	0.016	15.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|336251772|ref|YP_004585740.1|	-	0.015	15.3	0.0	0.025	14.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|336251772|ref|YP_004585740.1|	-	0.031	14.8	0.0	0.051	14.1	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
CoaE	PF01121.20	gi|336251772|ref|YP_004585740.1|	-	0.033	13.9	0.0	0.051	13.2	0.0	1.2	1	0	0	1	1	1	0	Dephospho-CoA	kinase
AAA_29	PF13555.6	gi|336251772|ref|YP_004585740.1|	-	0.094	12.5	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|336251772|ref|YP_004585740.1|	-	0.098	12.8	0.0	0.23	11.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|336251772|ref|YP_004585740.1|	-	0.13	12.0	0.0	0.36	10.6	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NTP_transf_5	PF14907.6	gi|336251773|ref|YP_004585741.1|	-	4.9e-66	222.9	1.4	8.3e-66	222.1	1.4	1.4	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
baeRF_family10	PF18854.1	gi|336251773|ref|YP_004585741.1|	-	0.047	13.9	0.1	0.34	11.1	0.0	2.1	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
Sulfatase	PF00884.23	gi|336251774|ref|YP_004585742.1|	-	0.0058	16.1	0.0	0.009	15.4	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|336251774|ref|YP_004585742.1|	-	0.0074	16.4	0.3	0.05	13.7	0.0	2.2	2	0	0	2	2	2	1	PglZ	domain
Polysacc_synt	PF01943.17	gi|336251775|ref|YP_004585743.1|	-	8.6e-27	94.2	23.0	8.6e-27	94.2	23.0	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|336251775|ref|YP_004585743.1|	-	2.5e-24	86.0	9.2	2.5e-24	86.0	9.2	2.1	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|336251775|ref|YP_004585743.1|	-	1.9e-15	57.2	18.2	1.9e-15	57.2	18.2	3.8	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336251775|ref|YP_004585743.1|	-	1.9e-13	49.8	17.1	1.9e-13	49.8	17.1	2.1	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
PNTB_4TM	PF12769.7	gi|336251775|ref|YP_004585743.1|	-	6.4	7.3	11.8	0.22	12.0	3.5	2.9	2	1	0	2	2	2	0	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
Sulfatase	PF00884.23	gi|336251776|ref|YP_004585744.1|	-	3.7e-27	95.5	0.1	5.1e-27	95.1	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251776|ref|YP_004585744.1|	-	2.2e-06	27.5	0.8	0.011	15.4	0.0	2.6	3	0	0	3	3	3	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF4994	PF16385.5	gi|336251776|ref|YP_004585744.1|	-	1.3e-05	25.0	0.7	0.0038	17.1	0.7	2.7	1	1	0	1	1	1	1	Domain	of	unknown	function
DUF4976	PF16347.5	gi|336251776|ref|YP_004585744.1|	-	0.00049	20.3	0.1	0.0013	18.9	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
Metalloenzyme	PF01676.18	gi|336251776|ref|YP_004585744.1|	-	0.0023	17.4	0.0	0.0047	16.3	0.0	1.5	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Sulfatase_C	PF14707.6	gi|336251776|ref|YP_004585744.1|	-	0.16	12.7	0.4	0.59	10.9	0.3	1.9	1	1	1	2	2	2	0	C-terminal	region	of	aryl-sulfatase
CytochromB561_N	PF09786.9	gi|336251777|ref|YP_004585745.1|	-	0.083	11.9	0.1	0.13	11.2	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	B561,	N	terminal
Sulfatase	PF00884.23	gi|336251778|ref|YP_004585746.1|	-	4.8e-44	151.0	0.1	6.7e-44	150.5	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251778|ref|YP_004585746.1|	-	7.1e-08	32.4	0.1	0.00038	20.1	0.0	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|336251778|ref|YP_004585746.1|	-	0.2	10.2	0.0	0.25	9.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
Glycos_transf_1	PF00534.20	gi|336251779|ref|YP_004585747.1|	-	2.8e-31	108.4	0.0	4.8e-31	107.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251779|ref|YP_004585747.1|	-	1.4e-25	90.2	0.0	3.1e-25	89.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336251779|ref|YP_004585747.1|	-	6.5e-19	68.5	0.1	1.7e-18	67.2	0.1	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336251779|ref|YP_004585747.1|	-	9.9e-12	45.6	1.0	1.3e-11	45.2	0.2	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336251779|ref|YP_004585747.1|	-	1.9e-07	31.4	0.0	4.5e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|336251779|ref|YP_004585747.1|	-	0.072	12.8	0.0	0.15	11.7	0.0	1.6	1	0	0	1	1	1	0	Starch	synthase	catalytic	domain
Cutinase	PF01083.22	gi|336251779|ref|YP_004585747.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Cutinase
Phosphodiest	PF01663.22	gi|336251780|ref|YP_004585748.1|	-	6.3e-45	154.3	2.2	6.4e-36	124.7	0.4	2.0	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|336251780|ref|YP_004585748.1|	-	0.0008	18.8	0.1	0.0015	17.9	0.1	1.4	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Glycos_transf_1	PF00534.20	gi|336251781|ref|YP_004585749.1|	-	4.5e-46	156.5	0.0	6.5e-46	156.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251781|ref|YP_004585749.1|	-	3.5e-36	124.6	0.0	6.3e-36	123.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336251781|ref|YP_004585749.1|	-	7.9e-18	65.0	1.3	1.7e-17	64.0	1.3	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|336251781|ref|YP_004585749.1|	-	2.9e-14	53.2	0.0	6e-14	52.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|336251781|ref|YP_004585749.1|	-	7.2e-13	49.3	1.5	7.2e-13	49.3	1.5	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|336251781|ref|YP_004585749.1|	-	0.013	15.5	0.0	0.025	14.6	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
DUF498	PF04430.14	gi|336251781|ref|YP_004585749.1|	-	0.027	14.5	0.0	0.055	13.5	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF498/DUF598)
Sulfatase	PF00884.23	gi|336251782|ref|YP_004585750.1|	-	3.8e-48	164.5	0.4	4.6e-48	164.2	0.4	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251782|ref|YP_004585750.1|	-	7.1e-09	35.7	1.0	0.00032	20.4	0.4	2.5	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|336251782|ref|YP_004585750.1|	-	0.00036	19.3	0.0	0.00057	18.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.18	gi|336251782|ref|YP_004585750.1|	-	0.0011	18.4	0.0	0.15	11.4	0.0	2.3	2	0	0	2	2	2	2	Metalloenzyme	superfamily
PG_binding_2	PF08823.11	gi|336251782|ref|YP_004585750.1|	-	0.016	15.5	0.4	0.5	10.7	0.1	3.1	3	0	0	3	3	3	0	Putative	peptidoglycan	binding	domain
TPR_7	PF13176.6	gi|336251782|ref|YP_004585750.1|	-	0.25	11.5	1.4	17	5.7	0.0	4.0	3	1	0	3	3	3	0	Tetratricopeptide	repeat
Glycos_transf_1	PF00534.20	gi|336251783|ref|YP_004585751.1|	-	1.5e-31	109.2	0.0	2.1e-31	108.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251783|ref|YP_004585751.1|	-	4.6e-28	98.3	0.0	2.6e-26	92.6	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336251783|ref|YP_004585751.1|	-	6.1e-25	88.2	0.7	1.3e-24	87.1	0.7	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336251783|ref|YP_004585751.1|	-	8.2e-19	68.6	4.0	8.2e-19	68.6	4.0	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336251783|ref|YP_004585751.1|	-	0.027	14.8	0.2	0.069	13.5	0.2	1.7	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
L27	PF02828.16	gi|336251783|ref|YP_004585751.1|	-	0.1	12.4	0.0	0.23	11.2	0.0	1.6	1	0	0	1	1	1	0	L27	domain
PAPS_reduct	PF01507.19	gi|336251784|ref|YP_004585752.1|	-	2.7e-18	66.6	0.0	3.2e-14	53.3	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_3	PF01171.20	gi|336251784|ref|YP_004585752.1|	-	0.0043	16.8	0.0	0.0073	16.1	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
Diphthami_syn_2	PF01902.17	gi|336251784|ref|YP_004585752.1|	-	0.063	12.8	0.0	0.097	12.2	0.0	1.3	1	0	0	1	1	1	0	Diphthamide	synthase
PHO4	PF01384.20	gi|336251785|ref|YP_004585753.1|	-	4.7e-34	117.9	37.7	2.3e-33	115.6	36.9	2.1	1	1	0	1	1	1	1	Phosphate	transporter	family
Phosphodiest	PF01663.22	gi|336251786|ref|YP_004585754.1|	-	4.9e-54	184.3	0.2	5.7e-54	184.0	0.2	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|336251786|ref|YP_004585754.1|	-	0.0085	15.5	3.2	0.091	12.1	0.9	2.8	3	0	0	3	3	3	1	Sulfatase
DUF2063	PF09836.9	gi|336251786|ref|YP_004585754.1|	-	0.075	13.3	0.2	0.16	12.2	0.2	1.6	1	0	0	1	1	1	0	Putative	DNA-binding	domain
MarR	PF01047.22	gi|336251787|ref|YP_004585755.1|	-	1.9e-06	27.7	0.3	6.9e-05	22.7	0.0	2.4	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|336251787|ref|YP_004585755.1|	-	6.2e-06	26.0	0.9	4.8e-05	23.2	0.1	2.5	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336251787|ref|YP_004585755.1|	-	1.6e-05	24.3	0.0	0.00049	19.6	0.0	2.6	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336251787|ref|YP_004585755.1|	-	0.0081	16.0	1.0	0.14	12.0	0.1	2.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HSBP1	PF06825.12	gi|336251787|ref|YP_004585755.1|	-	0.023	14.6	0.0	0.049	13.5	0.0	1.6	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
Sigma70_r4	PF04545.16	gi|336251787|ref|YP_004585755.1|	-	0.028	13.9	0.0	0.066	12.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|336251787|ref|YP_004585755.1|	-	0.059	13.4	0.7	0.13	12.2	0.1	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
NUDIX	PF00293.28	gi|336251788|ref|YP_004585756.1|	-	1.3e-17	64.0	0.2	1.6e-17	63.7	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_2	PF13869.6	gi|336251788|ref|YP_004585756.1|	-	0.018	14.6	0.0	0.023	14.3	0.0	1.2	1	0	0	1	1	1	0	Nucleotide	hydrolase
NTP_transferase	PF00483.23	gi|336251789|ref|YP_004585757.1|	-	1.4e-34	119.8	0.0	1.8e-34	119.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336251789|ref|YP_004585757.1|	-	3.7e-08	33.9	0.0	4.9e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|336251789|ref|YP_004585757.1|	-	0.0031	17.3	0.0	0.0051	16.6	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|336251790|ref|YP_004585758.1|	-	1.1e-26	93.6	0.0	1.8e-26	92.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336251790|ref|YP_004585758.1|	-	4.6e-05	23.4	0.0	6.3e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Prok-RING_1	PF14446.6	gi|336251791|ref|YP_004585759.1|	-	0.0075	16.2	0.4	0.012	15.6	0.4	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
PHD	PF00628.29	gi|336251791|ref|YP_004585759.1|	-	0.051	13.5	1.4	0.069	13.0	1.4	1.2	1	0	0	1	1	1	0	PHD-finger
Epimerase	PF01370.21	gi|336251792|ref|YP_004585760.1|	-	6.3e-44	150.2	0.6	7.5e-44	150.0	0.6	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336251792|ref|YP_004585760.1|	-	7.2e-41	140.7	0.6	7.2e-40	137.4	0.6	2.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336251792|ref|YP_004585760.1|	-	5.7e-11	42.0	0.3	8e-11	41.6	0.3	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336251792|ref|YP_004585760.1|	-	5.3e-10	38.8	1.9	1.8e-09	37.0	1.9	1.9	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336251792|ref|YP_004585760.1|	-	6.3e-10	38.7	0.3	2.7e-08	33.3	0.3	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336251792|ref|YP_004585760.1|	-	5.5e-07	29.0	0.4	9.3e-05	21.7	0.1	2.5	2	1	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|336251792|ref|YP_004585760.1|	-	0.06	12.8	0.4	0.5	9.8	0.0	2.3	1	1	1	2	2	2	0	short	chain	dehydrogenase
KR	PF08659.10	gi|336251792|ref|YP_004585760.1|	-	0.11	12.5	0.1	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	KR	domain
DUF1188	PF06690.11	gi|336251792|ref|YP_004585760.1|	-	0.18	11.4	0.0	0.23	11.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
Epimerase	PF01370.21	gi|336251793|ref|YP_004585761.1|	-	1e-53	182.3	0.0	1.3e-53	182.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336251793|ref|YP_004585761.1|	-	9e-46	156.8	0.0	5.9e-45	154.1	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|336251793|ref|YP_004585761.1|	-	6.9e-18	64.8	0.0	1.4e-16	60.5	0.0	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|336251793|ref|YP_004585761.1|	-	2.7e-17	62.8	0.0	3.7e-17	62.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336251793|ref|YP_004585761.1|	-	7.6e-15	54.7	0.0	1.1e-14	54.2	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|336251793|ref|YP_004585761.1|	-	1.2e-13	51.4	0.0	1.7e-13	50.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336251793|ref|YP_004585761.1|	-	1.5e-11	43.9	0.0	1.2e-06	27.9	0.0	2.8	2	1	0	2	2	2	2	Male	sterility	protein
NmrA	PF05368.13	gi|336251793|ref|YP_004585761.1|	-	1.1e-07	31.6	0.0	1.2e-06	28.3	0.0	2.0	1	1	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|336251793|ref|YP_004585761.1|	-	5.9e-07	29.1	0.0	7.8e-05	22.2	0.0	2.4	1	1	1	2	2	2	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|336251793|ref|YP_004585761.1|	-	9.2e-05	22.7	0.0	0.00018	21.7	0.0	1.4	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|336251793|ref|YP_004585761.1|	-	0.042	14.3	0.0	0.068	13.6	0.0	1.3	1	0	0	1	1	1	0	Putative	NAD(P)-binding
KR	PF08659.10	gi|336251793|ref|YP_004585761.1|	-	0.054	13.4	0.2	0.17	11.7	0.1	1.9	1	1	0	1	1	1	0	KR	domain
THF_DHG_CYH_C	PF02882.19	gi|336251793|ref|YP_004585761.1|	-	0.18	11.1	0.0	5.7	6.2	0.0	2.2	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
BPD_transp_1	PF00528.22	gi|336251795|ref|YP_004585763.1|	-	2e-15	57.0	16.8	2e-15	57.0	16.8	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4500	PF14937.6	gi|336251795|ref|YP_004585763.1|	-	0.12	12.4	0.8	7.3	6.7	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4500)
BPD_transp_1	PF00528.22	gi|336251796|ref|YP_004585764.1|	-	3.3e-19	69.3	16.4	3.3e-19	69.3	16.4	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|336251797|ref|YP_004585765.1|	-	1.7e-17	64.2	0.0	3.9e-17	63.0	0.0	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336251797|ref|YP_004585765.1|	-	4.4e-09	36.7	0.2	7.2e-09	36.0	0.2	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336251797|ref|YP_004585765.1|	-	0.94	9.4	10.8	0.038	13.8	4.3	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|336251798|ref|YP_004585766.1|	-	1.2e-32	113.3	0.0	1.9e-32	112.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336251798|ref|YP_004585766.1|	-	3e-09	37.6	0.1	1.2e-08	35.6	0.0	2.1	2	0	0	2	2	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336251798|ref|YP_004585766.1|	-	1.3e-05	25.2	0.0	0.029	14.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|336251798|ref|YP_004585766.1|	-	3.2e-05	24.0	0.0	4.9e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|336251798|ref|YP_004585766.1|	-	0.0015	18.0	0.3	0.077	12.4	0.3	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE_2	PF08402.10	gi|336251798|ref|YP_004585766.1|	-	0.0019	18.3	0.3	0.029	14.5	0.3	2.6	1	1	0	1	1	1	1	TOBE	domain
AAA_15	PF13175.6	gi|336251798|ref|YP_004585766.1|	-	0.0023	17.7	0.0	0.0094	15.7	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
CysA_C_terminal	PF17850.1	gi|336251798|ref|YP_004585766.1|	-	0.0025	18.4	0.7	0.01	16.4	0.2	2.3	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
AAA_22	PF13401.6	gi|336251798|ref|YP_004585766.1|	-	0.0078	16.5	0.0	0.014	15.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336251798|ref|YP_004585766.1|	-	0.0081	16.1	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|336251798|ref|YP_004585766.1|	-	0.013	15.2	0.3	0.032	14.0	0.3	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251798|ref|YP_004585766.1|	-	0.017	15.5	0.1	0.03	14.7	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336251798|ref|YP_004585766.1|	-	0.037	14.5	0.0	0.051	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|336251798|ref|YP_004585766.1|	-	0.067	12.5	0.1	0.15	11.4	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_5	PF07728.14	gi|336251798|ref|YP_004585766.1|	-	0.082	12.9	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|336251798|ref|YP_004585766.1|	-	0.1	12.3	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Glyco_hydro_3_C	PF01915.22	gi|336251799|ref|YP_004585767.1|	-	3.6e-52	177.3	0.0	7.4e-52	176.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|336251799|ref|YP_004585767.1|	-	1.7e-34	119.6	0.0	2.6e-34	119.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|336251799|ref|YP_004585767.1|	-	1.2e-23	82.9	3.7	3.2e-23	81.6	0.8	2.7	3	0	0	3	3	3	1	Fibronectin	type	III-like	domain
CBM_6	PF03422.15	gi|336251799|ref|YP_004585767.1|	-	7.4e-15	55.4	0.1	1.9e-14	54.1	0.1	1.7	1	0	0	1	1	1	1	Carbohydrate	binding	module	(family	6)
CARDB	PF07705.11	gi|336251799|ref|YP_004585767.1|	-	0.0031	17.7	0.0	0.011	15.9	0.0	1.9	1	0	0	1	1	1	1	CARDB
Fascin	PF06268.13	gi|336251799|ref|YP_004585767.1|	-	0.018	15.3	0.0	9.1	6.5	0.0	2.5	1	1	0	2	2	2	0	Fascin	domain
RicinB_lectin_2	PF14200.6	gi|336251799|ref|YP_004585767.1|	-	0.047	14.4	0.3	1.3	9.8	0.2	2.7	2	0	0	2	2	2	0	Ricin-type	beta-trefoil	lectin	domain-like
NPCBM_assoc	PF10633.9	gi|336251799|ref|YP_004585767.1|	-	0.055	13.7	3.3	4.5	7.6	0.2	4.0	4	0	0	4	4	4	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|336251799|ref|YP_004585767.1|	-	0.28	11.5	7.4	0.29	11.5	0.3	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	DUF11
KGG	PF10685.9	gi|336251799|ref|YP_004585767.1|	-	8.5	6.8	7.0	2.2	8.7	0.9	2.9	3	0	0	3	3	3	0	Stress-induced	bacterial	acidophilic	repeat	motif
Glyco_hydro_31	PF01055.26	gi|336251800|ref|YP_004585768.1|	-	5e-128	428.0	4.7	6.1e-128	427.7	4.7	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
DUF5110	PF17137.4	gi|336251800|ref|YP_004585768.1|	-	1.5e-16	60.4	0.0	4.8e-16	58.8	0.0	2.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5110)
DUF4968	PF16338.5	gi|336251800|ref|YP_004585768.1|	-	1.4e-12	47.7	0.0	4e-12	46.3	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4968)
Gal_mutarotas_2	PF13802.6	gi|336251800|ref|YP_004585768.1|	-	0.0005	20.3	0.5	0.0021	18.3	0.5	2.1	1	1	0	1	1	1	1	Galactose	mutarotase-like
IclR	PF01614.18	gi|336251801|ref|YP_004585769.1|	-	3.1e-40	137.0	0.1	4.5e-40	136.5	0.1	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251801|ref|YP_004585769.1|	-	6.5e-15	54.7	0.0	7.7e-13	48.0	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251801|ref|YP_004585769.1|	-	2e-07	30.5	0.0	5.4e-07	29.1	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336251801|ref|YP_004585769.1|	-	3.1e-06	27.0	0.0	6e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251801|ref|YP_004585769.1|	-	2.9e-05	23.9	0.0	7.8e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336251801|ref|YP_004585769.1|	-	3.1e-05	23.8	0.0	0.00014	21.7	0.0	2.0	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336251801|ref|YP_004585769.1|	-	0.00017	21.4	0.1	0.0008	19.3	0.0	2.3	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336251801|ref|YP_004585769.1|	-	0.00024	21.1	0.0	0.00073	19.5	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251801|ref|YP_004585769.1|	-	0.0028	17.8	0.0	0.0056	16.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_45	PF14947.6	gi|336251801|ref|YP_004585769.1|	-	0.0063	16.5	0.0	0.015	15.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
z-alpha	PF02295.17	gi|336251801|ref|YP_004585769.1|	-	0.012	15.6	0.0	0.035	14.2	0.0	1.7	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
HTH_11	PF08279.12	gi|336251801|ref|YP_004585769.1|	-	0.039	13.9	0.0	0.13	12.2	0.0	1.9	2	0	0	2	2	2	0	HTH	domain
DUF742	PF05331.11	gi|336251801|ref|YP_004585769.1|	-	0.049	13.4	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_27	PF13463.6	gi|336251801|ref|YP_004585769.1|	-	0.072	13.6	0.1	0.24	11.9	0.1	1.9	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
GAF_2	PF13185.6	gi|336251801|ref|YP_004585769.1|	-	0.11	12.8	0.1	0.2	12.0	0.1	1.4	1	1	0	1	1	1	0	GAF	domain
adh_short_C2	PF13561.6	gi|336251802|ref|YP_004585770.1|	-	7.9e-56	189.2	3.2	1.2e-55	188.6	3.2	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251802|ref|YP_004585770.1|	-	1.5e-47	161.6	1.0	2e-47	161.2	1.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251802|ref|YP_004585770.1|	-	1e-10	41.8	1.6	3.5e-08	33.6	0.2	2.1	1	1	1	2	2	2	2	KR	domain
Epimerase	PF01370.21	gi|336251802|ref|YP_004585770.1|	-	6.3e-05	22.6	0.3	0.00023	20.7	0.3	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|336251802|ref|YP_004585770.1|	-	0.011	15.1	0.0	0.02	14.2	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3HCDH_N	PF02737.18	gi|336251802|ref|YP_004585770.1|	-	0.019	14.8	0.3	0.11	12.4	0.1	2.1	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|336251802|ref|YP_004585770.1|	-	0.04	13.5	0.2	0.089	12.3	0.3	1.6	2	0	0	2	2	2	0	NmrA-like	family
F420_oxidored	PF03807.17	gi|336251802|ref|YP_004585770.1|	-	0.041	14.5	0.5	0.17	12.5	0.0	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ACT_7	PF13840.6	gi|336251802|ref|YP_004585770.1|	-	0.094	12.5	0.1	1.8	8.4	0.0	2.4	2	0	0	2	2	2	0	ACT	domain
SIMPL	PF04402.14	gi|336251802|ref|YP_004585770.1|	-	1.2	9.6	6.0	22	5.4	6.0	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF541)
GFO_IDH_MocA	PF01408.22	gi|336251803|ref|YP_004585771.1|	-	7.6e-17	62.2	1.1	2.6e-16	60.5	1.1	1.9	1	1	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
MR_MLE_C	PF13378.6	gi|336251804|ref|YP_004585772.1|	-	5.8e-45	153.5	0.2	7.8e-45	153.1	0.2	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251804|ref|YP_004585772.1|	-	1.8e-09	37.8	0.0	3.5e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Glyco_hydro81C	PF17652.1	gi|336251805|ref|YP_004585773.1|	-	5.8e-47	160.6	7.6	9e-47	160.0	7.6	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	81	C-terminal	domain
Glyco_hydro_81	PF03639.13	gi|336251805|ref|YP_004585773.1|	-	2.9e-08	33.2	0.0	8e-08	31.8	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	81	N-terminal	domain
Regulator_TrmB	PF11495.8	gi|336251806|ref|YP_004585774.1|	-	1.7e-47	161.5	0.0	2.2e-47	161.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|336251806|ref|YP_004585774.1|	-	5.6e-14	51.8	0.0	1.2e-13	50.7	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_7	PF02796.15	gi|336251806|ref|YP_004585774.1|	-	0.0044	17.1	0.0	0.0084	16.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_IclR	PF09339.10	gi|336251806|ref|YP_004585774.1|	-	0.0047	16.7	0.0	0.0099	15.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|336251806|ref|YP_004585774.1|	-	0.037	14.0	0.0	0.16	12.0	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
CENP-B_N	PF04218.13	gi|336251806|ref|YP_004585774.1|	-	0.057	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
FaeA	PF04703.12	gi|336251806|ref|YP_004585774.1|	-	0.13	12.7	0.2	0.63	10.4	0.1	2.1	1	1	1	2	2	2	0	FaeA-like	protein
HTH_23	PF13384.6	gi|336251806|ref|YP_004585774.1|	-	0.13	12.0	0.0	0.61	10.0	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
MscS_TM	PF12794.7	gi|336251807|ref|YP_004585775.1|	-	0.0042	16.0	1.2	0.0051	15.7	1.2	1.0	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	inner	membrane	domain	1
DUF202	PF02656.15	gi|336251807|ref|YP_004585775.1|	-	0.041	14.3	2.3	0.061	13.8	2.3	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
CoA_binding_3	PF13727.6	gi|336251807|ref|YP_004585775.1|	-	0.042	13.9	2.5	0.051	13.6	2.5	1.0	1	0	0	1	1	1	0	CoA-binding	domain
DUF2417	PF10329.9	gi|336251807|ref|YP_004585775.1|	-	0.089	12.2	0.1	0.098	12.1	0.1	1.1	1	0	0	1	1	1	0	Region	of	unknown	function	(DUF2417)
ABC_tran	PF00005.27	gi|336251808|ref|YP_004585776.1|	-	1.5e-28	100.0	0.0	2.1e-28	99.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251808|ref|YP_004585776.1|	-	5.1e-14	52.5	0.3	1.3e-13	51.3	0.3	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251808|ref|YP_004585776.1|	-	2.1e-06	27.8	0.9	0.035	13.9	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251808|ref|YP_004585776.1|	-	0.00066	19.2	0.0	0.43	10.0	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336251808|ref|YP_004585776.1|	-	0.0048	16.6	0.1	0.0083	15.8	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251808|ref|YP_004585776.1|	-	0.012	16.0	0.0	0.018	15.5	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251808|ref|YP_004585776.1|	-	0.012	15.9	3.7	0.22	11.8	3.7	2.3	1	1	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|336251808|ref|YP_004585776.1|	-	0.018	14.4	0.0	0.034	13.5	0.0	1.3	1	0	0	1	1	1	0	KaiC
NB-ARC	PF00931.22	gi|336251808|ref|YP_004585776.1|	-	0.029	13.5	0.1	0.053	12.7	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.6	gi|336251808|ref|YP_004585776.1|	-	0.031	14.8	0.0	0.052	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|336251808|ref|YP_004585776.1|	-	0.08	12.6	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|336251808|ref|YP_004585776.1|	-	0.12	11.8	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
NACHT	PF05729.12	gi|336251808|ref|YP_004585776.1|	-	0.14	12.1	0.5	0.25	11.2	0.1	1.6	2	0	0	2	2	2	0	NACHT	domain
MobB	PF03205.14	gi|336251808|ref|YP_004585776.1|	-	0.18	11.7	0.1	0.32	10.9	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.6	gi|336251808|ref|YP_004585776.1|	-	0.2	11.3	0.1	0.34	10.6	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|336251809|ref|YP_004585777.1|	-	2.8e-22	79.7	0.0	3.9e-22	79.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251809|ref|YP_004585777.1|	-	2.2e-19	69.7	0.3	4.5e-19	68.7	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251809|ref|YP_004585777.1|	-	1.5e-08	34.8	0.2	1.5e-06	28.3	0.2	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251809|ref|YP_004585777.1|	-	0.00018	21.0	0.3	0.057	12.9	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336251809|ref|YP_004585777.1|	-	0.0012	19.1	0.6	0.029	14.7	0.6	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|336251809|ref|YP_004585777.1|	-	0.0032	17.0	0.0	0.1	12.2	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|336251809|ref|YP_004585777.1|	-	0.0038	17.0	0.1	0.08	12.7	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
ABC_ATPase	PF09818.9	gi|336251809|ref|YP_004585777.1|	-	0.0045	15.9	0.1	0.057	12.2	0.0	2.3	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
DUF87	PF01935.17	gi|336251809|ref|YP_004585777.1|	-	0.018	15.1	0.1	0.033	14.3	0.1	1.3	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
PRK	PF00485.18	gi|336251809|ref|YP_004585777.1|	-	0.024	14.3	0.0	0.035	13.9	0.0	1.2	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_29	PF13555.6	gi|336251809|ref|YP_004585777.1|	-	0.029	14.1	0.0	0.059	13.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251809|ref|YP_004585777.1|	-	0.046	14.1	0.1	0.078	13.3	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|336251809|ref|YP_004585777.1|	-	0.05	12.6	0.0	0.07	12.1	0.0	1.1	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
T2SSE	PF00437.20	gi|336251809|ref|YP_004585777.1|	-	0.059	12.4	0.0	0.096	11.7	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|336251809|ref|YP_004585777.1|	-	0.092	12.7	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Dynamin_N	PF00350.23	gi|336251809|ref|YP_004585777.1|	-	0.13	12.3	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Dynamin	family
MobB	PF03205.14	gi|336251809|ref|YP_004585777.1|	-	0.16	11.9	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PhoH	PF02562.16	gi|336251809|ref|YP_004585777.1|	-	0.22	10.9	0.0	0.37	10.2	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
BPD_transp_1	PF00528.22	gi|336251810|ref|YP_004585778.1|	-	9.3e-23	80.9	12.5	9.3e-23	80.9	12.5	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336251810|ref|YP_004585778.1|	-	0.25	11.3	0.0	0.25	11.3	0.0	2.4	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|336251811|ref|YP_004585779.1|	-	6.6e-36	123.8	9.7	6.6e-36	123.8	9.7	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|336251812|ref|YP_004585780.1|	-	2.3e-47	161.8	6.8	2.8e-47	161.5	6.8	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251812|ref|YP_004585780.1|	-	0.099	12.5	2.9	0.16	11.8	2.9	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
LRR_adjacent	PF08191.11	gi|336251812|ref|YP_004585780.1|	-	0.33	11.2	1.3	1.1	9.5	1.3	1.9	1	0	0	1	1	1	0	LRR	adjacent
Glyco_hydro_3	PF00933.21	gi|336251813|ref|YP_004585781.1|	-	1.5e-77	261.1	0.0	1.9e-77	260.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336251813|ref|YP_004585781.1|	-	5.8e-49	166.8	0.0	8.9e-49	166.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336251813|ref|YP_004585781.1|	-	9.7e-15	54.4	0.1	1.2e-13	50.9	0.0	2.2	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|336251813|ref|YP_004585781.1|	-	0.077	13.3	0.2	0.51	10.7	0.2	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|336251813|ref|YP_004585781.1|	-	0.093	13.0	0.0	0.21	11.9	0.0	1.5	1	0	0	1	1	1	0	CARDB
Alginate_lyase	PF05426.12	gi|336251814|ref|YP_004585782.1|	-	0.067	12.7	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Alginate	lyase
GFO_IDH_MocA	PF01408.22	gi|336251815|ref|YP_004585783.1|	-	1.7e-22	80.4	0.0	3e-22	79.7	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336251815|ref|YP_004585783.1|	-	7.6e-07	29.2	0.2	1.3e-06	28.4	0.2	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_2	PF03446.15	gi|336251815|ref|YP_004585783.1|	-	0.014	15.6	0.0	0.025	14.8	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|336251815|ref|YP_004585783.1|	-	0.088	13.3	0.0	0.18	12.2	0.0	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|336251815|ref|YP_004585783.1|	-	0.095	12.8	0.5	0.57	10.3	0.1	2.2	2	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
CoA_binding_2	PF13380.6	gi|336251815|ref|YP_004585783.1|	-	0.11	13.0	0.0	0.22	12.0	0.0	1.4	1	0	0	1	1	1	0	CoA	binding	domain
Glyco_hydro_3	PF00933.21	gi|336251816|ref|YP_004585784.1|	-	3.1e-79	266.6	0.0	4.1e-79	266.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336251816|ref|YP_004585784.1|	-	3.5e-48	164.3	0.0	6.1e-48	163.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336251816|ref|YP_004585784.1|	-	4.9e-19	68.2	0.1	1e-18	67.2	0.1	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
LSDAT_euk	PF18139.1	gi|336251816|ref|YP_004585784.1|	-	0.27	10.6	0.3	0.95	8.8	0.2	1.8	2	0	0	2	2	2	0	SLOG	in	TRPM
TFIIE-A_C	PF11521.8	gi|336251816|ref|YP_004585784.1|	-	0.91	9.9	2.7	8.9	6.7	0.1	3.2	3	0	0	3	3	3	0	C-terminal	general	transcription	factor	TFIIE	alpha
Beta_helix	PF13229.6	gi|336251817|ref|YP_004585785.1|	-	3.4e-06	27.0	0.1	0.012	15.5	0.0	2.3	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF1349	PF07081.11	gi|336251817|ref|YP_004585785.1|	-	4.2e-05	23.3	0.0	8.6e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
BPD_transp_1	PF00528.22	gi|336251819|ref|YP_004585787.1|	-	6.6e-31	107.5	13.2	6.6e-31	107.5	13.2	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2956	PF11169.8	gi|336251819|ref|YP_004585787.1|	-	0.2	11.9	0.7	0.45	10.7	0.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2956)
Renin_r	PF07850.14	gi|336251819|ref|YP_004585787.1|	-	0.28	11.8	0.2	0.28	11.8	0.2	1.8	2	0	0	2	2	2	0	Renin	receptor-like	protein
LapA_dom	PF06305.11	gi|336251819|ref|YP_004585787.1|	-	0.74	9.7	7.5	0.59	10.0	3.0	2.7	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
BPD_transp_1	PF00528.22	gi|336251820|ref|YP_004585788.1|	-	9.2e-24	84.2	10.5	9.2e-24	84.2	10.5	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336251820|ref|YP_004585788.1|	-	0.00037	20.4	0.5	0.0011	18.9	0.0	2.0	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF3927	PF13064.6	gi|336251820|ref|YP_004585788.1|	-	0.043	13.8	0.9	0.1	12.6	0.9	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3927)
ABC_tran	PF00005.27	gi|336251821|ref|YP_004585789.1|	-	1.2e-52	178.1	0.0	4.3e-29	101.8	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336251821|ref|YP_004585789.1|	-	3e-34	117.3	4.4	6e-17	61.9	0.1	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251821|ref|YP_004585789.1|	-	1.5e-17	64.3	3.3	8.9e-08	32.3	0.3	4.2	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336251821|ref|YP_004585789.1|	-	3.7e-09	37.0	1.0	0.0015	18.8	0.0	3.5	2	2	0	2	2	2	2	AAA	domain
SMC_N	PF02463.19	gi|336251821|ref|YP_004585789.1|	-	1.9e-07	30.8	0.1	0.082	12.3	0.0	3.6	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|336251821|ref|YP_004585789.1|	-	1.3e-06	28.3	0.1	0.16	11.7	0.0	3.2	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|336251821|ref|YP_004585789.1|	-	2.4e-06	27.2	0.1	0.017	14.8	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251821|ref|YP_004585789.1|	-	1e-05	26.0	0.0	0.22	11.9	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_25	PF13481.6	gi|336251821|ref|YP_004585789.1|	-	1.6e-05	24.6	0.0	0.45	10.1	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|336251821|ref|YP_004585789.1|	-	3.5e-05	23.8	0.1	0.12	12.3	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
PhoH	PF02562.16	gi|336251821|ref|YP_004585789.1|	-	5.5e-05	22.7	0.0	0.21	11.0	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.12	gi|336251821|ref|YP_004585789.1|	-	5.9e-05	23.0	1.5	0.23	11.3	0.0	2.4	2	0	0	2	2	2	2	NACHT	domain
AAA_23	PF13476.6	gi|336251821|ref|YP_004585789.1|	-	7.5e-05	23.3	0.0	0.71	10.3	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
MobB	PF03205.14	gi|336251821|ref|YP_004585789.1|	-	0.00019	21.3	0.1	0.75	9.7	0.0	2.6	2	1	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NB-ARC	PF00931.22	gi|336251821|ref|YP_004585789.1|	-	0.00022	20.5	0.0	0.21	10.8	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
RNA_helicase	PF00910.22	gi|336251821|ref|YP_004585789.1|	-	0.00033	21.0	0.0	1.5	9.2	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_24	PF13479.6	gi|336251821|ref|YP_004585789.1|	-	0.00071	19.4	0.0	0.66	9.7	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336251821|ref|YP_004585789.1|	-	0.00074	18.9	0.1	0.48	9.7	0.1	2.6	2	0	0	2	2	2	1	KaiC
AAA_33	PF13671.6	gi|336251821|ref|YP_004585789.1|	-	0.0019	18.3	0.2	0.92	9.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|336251821|ref|YP_004585789.1|	-	0.0023	17.7	0.6	2.1	8.0	0.0	3.0	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_7	PF12775.7	gi|336251821|ref|YP_004585789.1|	-	0.0026	17.3	0.0	6.3	6.3	0.0	3.2	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|336251821|ref|YP_004585789.1|	-	0.0063	16.9	0.0	2.3	8.6	0.0	3.0	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|336251821|ref|YP_004585789.1|	-	0.0071	15.7	0.0	1.2	8.5	0.0	2.5	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|336251821|ref|YP_004585789.1|	-	0.0078	15.9	0.0	1.6	8.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Roc	PF08477.13	gi|336251821|ref|YP_004585789.1|	-	0.01	16.0	0.3	3.8	7.7	0.1	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_30	PF13604.6	gi|336251821|ref|YP_004585789.1|	-	0.014	15.2	0.0	2.3	7.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|336251821|ref|YP_004585789.1|	-	0.014	14.6	0.0	4.7	6.4	0.0	2.6	2	0	0	2	2	2	0	Zeta	toxin
MMR_HSR1	PF01926.23	gi|336251821|ref|YP_004585789.1|	-	0.021	14.9	0.1	4.5	7.4	0.1	2.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.14	gi|336251821|ref|YP_004585789.1|	-	0.023	14.7	6.0	2	8.4	0.2	3.3	4	0	0	4	4	3	0	AAA	domain	(dynein-related	subfamily)
DUF87	PF01935.17	gi|336251821|ref|YP_004585789.1|	-	0.03	14.4	0.0	0.099	12.7	0.0	1.8	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
TsaE	PF02367.17	gi|336251821|ref|YP_004585789.1|	-	0.045	13.8	0.0	1.5	8.9	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_18	PF13238.6	gi|336251821|ref|YP_004585789.1|	-	0.058	13.9	0.0	4.7	7.8	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|336251821|ref|YP_004585789.1|	-	0.06	12.1	0.3	3.8	6.2	0.0	3.1	4	0	0	4	4	4	0	Predicted	ATPase	of	the	ABC	class
PduV-EutP	PF10662.9	gi|336251821|ref|YP_004585789.1|	-	0.089	12.5	0.3	0.69	9.6	0.1	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
ATPase_2	PF01637.18	gi|336251821|ref|YP_004585789.1|	-	0.14	12.1	0.0	2.2	8.1	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
PRK	PF00485.18	gi|336251821|ref|YP_004585789.1|	-	0.2	11.4	0.5	15	5.2	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
SBP_bac_5	PF00496.22	gi|336251822|ref|YP_004585790.1|	-	2.4e-35	122.2	0.1	4.2e-35	121.4	0.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251822|ref|YP_004585790.1|	-	0.0025	17.6	1.7	0.0046	16.8	1.7	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EPSP_synthase	PF00275.20	gi|336251822|ref|YP_004585790.1|	-	0.2	10.3	0.0	0.29	9.8	0.0	1.1	1	0	0	1	1	1	0	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
adh_short_C2	PF13561.6	gi|336251823|ref|YP_004585791.1|	-	3.5e-63	213.3	3.0	4.5e-63	212.9	3.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251823|ref|YP_004585791.1|	-	2.4e-54	183.8	0.4	2.8e-54	183.5	0.4	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251823|ref|YP_004585791.1|	-	9.8e-11	41.9	0.4	1.3e-10	41.4	0.4	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336251823|ref|YP_004585791.1|	-	0.0014	18.1	0.2	0.0023	17.4	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Acetyltransf_6	PF13480.7	gi|336251823|ref|YP_004585791.1|	-	0.091	12.9	2.0	8.9	6.5	0.3	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
COX14	PF14880.6	gi|336251824|ref|YP_004585792.1|	-	0.085	12.7	0.5	0.085	12.7	0.5	1.9	2	1	0	2	2	2	0	Cytochrome	oxidase	c	assembly
DUF2892	PF11127.8	gi|336251824|ref|YP_004585792.1|	-	0.65	10.1	11.3	0.83	9.7	11.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Phage_holin_3_6	PF07332.11	gi|336251824|ref|YP_004585792.1|	-	1.2	9.2	10.4	1.5	8.9	10.4	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3040	PF11239.8	gi|336251824|ref|YP_004585792.1|	-	4.7	7.5	11.7	7.4	6.9	11.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Neurensin	PF14927.6	gi|336251824|ref|YP_004585792.1|	-	8.5	6.1	8.8	0.89	9.3	2.7	1.9	1	1	1	2	2	2	0	Neurensin
Epimerase	PF01370.21	gi|336251825|ref|YP_004585793.1|	-	6e-19	68.5	0.1	9.4e-19	67.8	0.1	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336251825|ref|YP_004585793.1|	-	6.6e-13	48.7	0.3	3e-12	46.6	0.3	2.2	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|336251825|ref|YP_004585793.1|	-	6.9e-13	48.2	0.0	1.1e-12	47.6	0.0	1.3	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336251825|ref|YP_004585793.1|	-	6.1e-11	42.0	0.0	1.8e-09	37.2	0.0	2.5	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|336251825|ref|YP_004585793.1|	-	3.8e-08	33.5	0.0	5.2e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336251825|ref|YP_004585793.1|	-	5.2e-08	32.4	0.0	7.2e-08	31.9	0.0	1.2	1	0	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|336251825|ref|YP_004585793.1|	-	7e-08	31.9	0.0	1.3e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
KR	PF08659.10	gi|336251825|ref|YP_004585793.1|	-	0.042	13.8	0.0	3.3	7.6	0.0	2.2	1	1	0	1	1	1	0	KR	domain
MR_MLE_C	PF13378.6	gi|336251826|ref|YP_004585794.1|	-	9.1e-64	215.0	0.4	1.3e-63	214.5	0.4	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251826|ref|YP_004585794.1|	-	1.3e-14	54.4	0.0	3.5e-14	53.0	0.0	1.7	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Lipase_GDSL_2	PF13472.6	gi|336251827|ref|YP_004585795.1|	-	2.7e-20	73.5	0.0	3.4e-20	73.2	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.22	gi|336251827|ref|YP_004585795.1|	-	2.5e-08	34.1	0.0	3.1e-08	33.8	0.0	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
DHDPS	PF00701.22	gi|336251828|ref|YP_004585796.1|	-	1.2e-36	125.9	0.0	1.5e-36	125.6	0.0	1.1	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Asp_Glu_race	PF01177.22	gi|336251828|ref|YP_004585796.1|	-	0.056	13.3	0.0	0.091	12.6	0.0	1.5	1	0	0	1	1	1	0	Asp/Glu/Hydantoin	racemase
ThuA	PF06283.11	gi|336251829|ref|YP_004585797.1|	-	5.5e-34	118.2	0.0	6.5e-34	118.0	0.0	1.1	1	0	0	1	1	1	1	Trehalose	utilisation
DUF1349	PF07081.11	gi|336251830|ref|YP_004585798.1|	-	2.1e-08	34.1	0.2	2.3e-07	30.7	0.2	2.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
Pec_lyase_C	PF00544.19	gi|336251830|ref|YP_004585798.1|	-	0.0022	17.6	1.6	0.014	15.0	1.6	2.2	1	1	0	1	1	1	1	Pectate	lyase
DUF1583	PF07622.11	gi|336251830|ref|YP_004585798.1|	-	0.024	13.4	0.0	0.045	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1583)
MR_MLE_C	PF13378.6	gi|336251831|ref|YP_004585799.1|	-	4.4e-67	225.9	3.9	5.8e-67	225.5	3.9	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251831|ref|YP_004585799.1|	-	1.6e-20	73.5	0.0	4.2e-20	72.1	0.0	1.7	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Bac_luciferase	PF00296.20	gi|336251832|ref|YP_004585800.1|	-	2.2e-50	171.9	0.0	3e-50	171.4	0.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Abhydrolase_7	PF12715.7	gi|336251833|ref|YP_004585801.1|	-	8e-22	78.0	0.0	2.4e-21	76.5	0.0	1.6	1	1	0	1	1	1	1	Abhydrolase	family
AXE1	PF05448.12	gi|336251833|ref|YP_004585801.1|	-	3.3e-06	26.0	0.0	6.5e-06	25.0	0.0	1.4	1	0	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_6	PF12697.7	gi|336251833|ref|YP_004585801.1|	-	9.4e-06	26.4	6.0	9.4e-06	26.4	6.0	2.0	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|336251833|ref|YP_004585801.1|	-	1e-05	25.2	0.1	3.3e-05	23.5	0.1	1.8	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|336251833|ref|YP_004585801.1|	-	0.00052	19.5	0.0	0.0093	15.5	0.0	2.2	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Esterase_phd	PF10503.9	gi|336251833|ref|YP_004585801.1|	-	0.0087	15.6	0.5	0.0087	15.6	0.5	1.6	2	0	0	2	2	2	1	Esterase	PHB	depolymerase
Abhydrolase_1	PF00561.20	gi|336251833|ref|YP_004585801.1|	-	0.011	15.3	0.0	0.073	12.7	0.0	1.9	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336251833|ref|YP_004585801.1|	-	0.027	13.7	1.2	5	6.3	0.0	3.3	3	1	0	3	3	3	0	Serine	aminopeptidase,	S33
BAAT_C	PF08840.11	gi|336251833|ref|YP_004585801.1|	-	0.068	13.1	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Lipase_3	PF01764.25	gi|336251833|ref|YP_004585801.1|	-	0.085	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	Lipase	(class	3)
Esterase	PF00756.20	gi|336251833|ref|YP_004585801.1|	-	0.087	12.5	0.1	2	8.0	0.0	2.6	3	0	0	3	3	3	0	Putative	esterase
LIP	PF03583.14	gi|336251833|ref|YP_004585801.1|	-	0.13	11.5	0.0	0.41	9.9	0.0	1.8	2	0	0	2	2	2	0	Secretory	lipase
DHDPS	PF00701.22	gi|336251834|ref|YP_004585802.1|	-	4.5e-36	124.0	0.0	5.6e-36	123.7	0.0	1.1	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
DUF2569	PF10754.9	gi|336251835|ref|YP_004585803.1|	-	0.039	14.4	0.5	0.047	14.1	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2569)
TPP_enzyme_N	PF02776.18	gi|336251836|ref|YP_004585804.1|	-	2.2e-39	134.8	0.0	1.8e-33	115.6	0.0	2.3	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|336251836|ref|YP_004585804.1|	-	4.6e-38	130.4	0.0	8.7e-38	129.5	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|336251836|ref|YP_004585804.1|	-	5.7e-32	110.3	0.0	1.2e-31	109.3	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Glyco_hydro_28	PF00295.17	gi|336251837|ref|YP_004585805.1|	-	1e-50	172.7	1.2	1.3e-48	165.8	0.6	2.5	2	1	0	2	2	2	1	Glycosyl	hydrolases	family	28
Pectate_lyase_3	PF12708.7	gi|336251837|ref|YP_004585805.1|	-	1.6e-13	51.0	2.4	2e-06	27.8	0.0	3.5	2	1	2	4	4	4	2	Pectate	lyase	superfamily	protein
Beta_helix	PF13229.6	gi|336251837|ref|YP_004585805.1|	-	1.1e-08	35.1	16.0	3.7e-07	30.1	7.6	2.7	2	1	1	3	3	3	2	Right	handed	beta	helix	region
NosD	PF05048.13	gi|336251837|ref|YP_004585805.1|	-	0.0021	17.3	0.5	0.0021	17.3	0.5	3.1	1	1	2	3	3	3	2	Periplasmic	copper-binding	protein	(NosD)
DUF4957	PF16318.5	gi|336251837|ref|YP_004585805.1|	-	0.067	13.1	0.6	0.5	10.3	0.3	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4957)
GFO_IDH_MocA	PF01408.22	gi|336251838|ref|YP_004585806.1|	-	9.5e-26	91.0	0.1	1.8e-25	90.1	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336251838|ref|YP_004585806.1|	-	2.5e-12	46.8	0.1	4.4e-12	46.0	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.24	gi|336251838|ref|YP_004585806.1|	-	0.0049	17.3	0.1	0.0098	16.3	0.1	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
ox_reductase_C	PF08635.10	gi|336251838|ref|YP_004585806.1|	-	0.016	14.9	0.1	0.044	13.4	0.0	1.6	1	1	0	1	1	1	0	Putative	oxidoreductase	C	terminal	domain
CoA_binding_2	PF13380.6	gi|336251838|ref|YP_004585806.1|	-	0.088	13.3	0.1	0.2	12.2	0.1	1.7	1	0	0	1	1	1	0	CoA	binding	domain
F420_oxidored	PF03807.17	gi|336251838|ref|YP_004585806.1|	-	0.12	12.9	0.5	0.3	11.7	0.1	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF296	PF03479.15	gi|336251839|ref|YP_004585807.1|	-	1.2e-18	67.4	0.0	1.5e-18	67.1	0.0	1.1	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
F420_oxidored	PF03807.17	gi|336251840|ref|YP_004585808.1|	-	1.5e-16	60.8	0.0	2.5e-16	60.0	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|336251840|ref|YP_004585808.1|	-	3.4e-05	24.1	0.0	6.2e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|336251840|ref|YP_004585808.1|	-	5.3e-05	22.9	0.0	6.5e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.23	gi|336251840|ref|YP_004585808.1|	-	5.9e-05	23.1	0.0	7.6e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Semialdhyde_dh	PF01118.24	gi|336251840|ref|YP_004585808.1|	-	0.00016	22.1	0.0	0.00029	21.3	0.0	1.5	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336251840|ref|YP_004585808.1|	-	0.00058	19.5	0.0	0.0014	18.2	0.0	1.6	1	1	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_10	PF13460.6	gi|336251840|ref|YP_004585808.1|	-	0.00062	19.7	0.1	0.00093	19.1	0.1	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|336251840|ref|YP_004585808.1|	-	0.0038	17.4	0.0	0.0068	16.6	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PDH	PF02153.17	gi|336251840|ref|YP_004585808.1|	-	0.013	14.6	0.0	0.018	14.0	0.0	1.2	1	0	0	1	1	1	0	Prephenate	dehydrogenase
Pilus_CpaD	PF09476.10	gi|336251840|ref|YP_004585808.1|	-	0.021	14.5	0.1	0.034	13.9	0.1	1.2	1	0	0	1	1	1	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
KR	PF08659.10	gi|336251840|ref|YP_004585808.1|	-	0.023	14.6	0.6	0.032	14.1	0.1	1.4	2	0	0	2	2	2	0	KR	domain
EccE	PF11203.8	gi|336251840|ref|YP_004585808.1|	-	0.03	14.7	0.2	0.085	13.2	0.1	1.8	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
MR_MLE_C	PF13378.6	gi|336251841|ref|YP_004585809.1|	-	8.4e-43	146.5	0.4	1.2e-42	146.0	0.4	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251841|ref|YP_004585809.1|	-	6.2e-13	49.0	0.0	1.2e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
IclR	PF01614.18	gi|336251842|ref|YP_004585810.1|	-	4.6e-37	126.7	0.0	8.6e-37	125.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251842|ref|YP_004585810.1|	-	4.2e-11	42.5	0.0	1.1e-10	41.1	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251842|ref|YP_004585810.1|	-	7.8e-08	31.8	0.0	1.4e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336251842|ref|YP_004585810.1|	-	4.2e-06	26.5	0.0	1.1e-05	25.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336251842|ref|YP_004585810.1|	-	3e-05	23.8	0.0	7.7e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336251842|ref|YP_004585810.1|	-	0.00019	21.4	0.0	0.00045	20.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|336251842|ref|YP_004585810.1|	-	0.0018	18.0	0.1	0.0051	16.5	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251842|ref|YP_004585810.1|	-	0.0041	17.0	0.1	0.022	14.7	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|336251842|ref|YP_004585810.1|	-	0.0042	16.9	0.0	0.011	15.6	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_40	PF14493.6	gi|336251842|ref|YP_004585810.1|	-	0.0097	16.3	0.5	0.035	14.6	0.2	2.1	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|336251842|ref|YP_004585810.1|	-	0.01	15.7	0.0	0.022	14.6	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|336251842|ref|YP_004585810.1|	-	0.01	15.7	0.0	0.023	14.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
GerE	PF00196.19	gi|336251842|ref|YP_004585810.1|	-	0.018	14.6	0.1	0.033	13.7	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_DeoR	PF08220.12	gi|336251842|ref|YP_004585810.1|	-	0.02	14.7	0.1	0.046	13.5	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
NlpE	PF04170.12	gi|336251842|ref|YP_004585810.1|	-	0.022	15.7	0.0	0.044	14.7	0.0	1.4	1	0	0	1	1	1	0	NlpE	N-terminal	domain
RepL	PF05732.11	gi|336251842|ref|YP_004585810.1|	-	0.025	14.0	0.1	0.065	12.7	0.1	1.6	1	1	1	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
SpoIIID	PF12116.8	gi|336251842|ref|YP_004585810.1|	-	0.03	14.4	0.5	0.082	13.0	0.0	2.1	2	1	0	2	2	1	0	Stage	III	sporulation	protein	D
GAF	PF01590.26	gi|336251842|ref|YP_004585810.1|	-	0.033	14.8	0.0	0.048	14.3	0.0	1.4	1	0	0	1	1	1	0	GAF	domain
HTH_10	PF04967.12	gi|336251842|ref|YP_004585810.1|	-	0.037	13.8	0.1	0.13	12.1	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_34	PF13601.6	gi|336251842|ref|YP_004585810.1|	-	0.038	14.2	0.0	0.084	13.1	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
GAF_2	PF13185.6	gi|336251842|ref|YP_004585810.1|	-	0.049	13.9	0.0	0.078	13.3	0.0	1.7	1	1	0	1	1	1	0	GAF	domain
B-block_TFIIIC	PF04182.12	gi|336251842|ref|YP_004585810.1|	-	0.049	13.8	0.0	0.089	13.0	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|336251842|ref|YP_004585810.1|	-	0.07	13.1	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_36	PF13730.6	gi|336251842|ref|YP_004585810.1|	-	0.16	11.9	0.1	0.95	9.5	0.0	2.2	2	1	0	2	2	2	0	Helix-turn-helix	domain
Bac_luciferase	PF00296.20	gi|336251843|ref|YP_004585811.1|	-	6.1e-51	173.7	0.0	7.8e-51	173.3	0.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
SBP_bac_1	PF01547.25	gi|336251844|ref|YP_004585812.1|	-	1.7e-21	77.5	2.8	5.4e-21	75.9	2.8	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|336251844|ref|YP_004585812.1|	-	2.2e-20	73.6	0.4	3.6e-20	72.9	0.4	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336251844|ref|YP_004585812.1|	-	0.061	13.2	0.8	0.061	13.2	0.8	1.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336251844|ref|YP_004585812.1|	-	0.062	12.7	0.3	0.15	11.4	0.3	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Phage_ABA_S	PF18066.1	gi|336251844|ref|YP_004585812.1|	-	0.11	13.2	0.3	28	5.5	0.0	2.9	3	0	0	3	3	3	0	Phage	ABA	sandwich	domain
BPD_transp_1	PF00528.22	gi|336251845|ref|YP_004585813.1|	-	3.8e-19	69.2	17.8	3.8e-19	69.2	17.8	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Col_cuticle_N	PF01484.17	gi|336251845|ref|YP_004585813.1|	-	0.16	12.0	0.3	0.16	12.0	0.3	4.0	4	0	0	4	4	4	0	Nematode	cuticle	collagen	N-terminal	domain
DUF3671	PF12420.8	gi|336251845|ref|YP_004585813.1|	-	2.3	8.3	7.9	25	5.0	0.7	3.6	3	2	0	3	3	3	0	Protein	of	unknown	function
BPD_transp_1	PF00528.22	gi|336251846|ref|YP_004585814.1|	-	1.1e-14	54.6	17.7	1.1e-14	54.6	17.7	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336251847|ref|YP_004585815.1|	-	2.8e-33	115.3	0.0	5.4e-33	114.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336251847|ref|YP_004585815.1|	-	4e-10	40.4	0.0	1.5e-09	38.5	0.0	2.1	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336251847|ref|YP_004585815.1|	-	4.8e-06	26.6	0.0	0.066	13.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|336251847|ref|YP_004585815.1|	-	6.2e-06	26.7	0.7	2.3e-05	24.9	0.5	2.2	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
TOBE_2	PF08402.10	gi|336251847|ref|YP_004585815.1|	-	4e-05	23.7	0.1	0.0069	16.5	0.1	2.6	1	1	0	1	1	1	1	TOBE	domain
Rad17	PF03215.15	gi|336251847|ref|YP_004585815.1|	-	6.8e-05	22.9	0.0	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|336251847|ref|YP_004585815.1|	-	0.00017	21.1	0.1	0.00052	19.5	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336251847|ref|YP_004585815.1|	-	0.0047	16.6	0.0	0.011	15.5	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251847|ref|YP_004585815.1|	-	0.0052	17.2	0.0	0.011	16.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|336251847|ref|YP_004585815.1|	-	0.0093	16.0	0.0	0.023	14.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_15	PF13175.6	gi|336251847|ref|YP_004585815.1|	-	0.0095	15.7	0.0	0.022	14.5	0.0	1.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251847|ref|YP_004585815.1|	-	0.011	16.0	0.0	0.026	14.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336251847|ref|YP_004585815.1|	-	0.021	15.2	0.0	0.042	14.3	0.0	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|336251847|ref|YP_004585815.1|	-	0.038	13.9	0.0	0.083	12.8	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|336251847|ref|YP_004585815.1|	-	0.092	13.2	0.0	0.16	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
GFO_IDH_MocA	PF01408.22	gi|336251849|ref|YP_004585817.1|	-	1.7e-22	80.5	0.0	3.6e-22	79.4	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
CoA_binding	PF02629.19	gi|336251849|ref|YP_004585817.1|	-	0.0092	16.6	0.0	0.018	15.7	0.0	1.5	1	0	0	1	1	1	1	CoA	binding	domain
GFO_IDH_MocA_C	PF02894.17	gi|336251849|ref|YP_004585817.1|	-	0.031	14.3	0.0	0.063	13.3	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
F420_oxidored	PF03807.17	gi|336251849|ref|YP_004585817.1|	-	0.038	14.6	0.0	0.083	13.5	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|336251849|ref|YP_004585817.1|	-	0.11	12.7	0.2	0.33	11.2	0.1	1.9	2	0	0	2	2	2	0	TrkA-N	domain
Methyltransf_25	PF13649.6	gi|336251850|ref|YP_004585818.1|	-	2.5e-17	63.4	0.0	4.4e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336251850|ref|YP_004585818.1|	-	1.1e-15	57.7	0.0	2.2e-15	56.8	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336251850|ref|YP_004585818.1|	-	2.5e-13	50.5	0.1	1.3e-12	48.2	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336251850|ref|YP_004585818.1|	-	7.7e-10	39.4	0.0	1.7e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336251850|ref|YP_004585818.1|	-	2.8e-09	36.7	0.0	3.6e-08	33.0	0.0	1.9	1	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|336251850|ref|YP_004585818.1|	-	3.2e-08	33.3	0.0	5.8e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|336251850|ref|YP_004585818.1|	-	1.1e-07	31.8	0.0	1.6e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|336251850|ref|YP_004585818.1|	-	3.5e-06	26.6	0.1	5.4e-06	26.0	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|336251850|ref|YP_004585818.1|	-	0.007	16.3	0.2	0.015	15.3	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|336251850|ref|YP_004585818.1|	-	0.074	13.0	0.0	0.14	12.2	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	domain
PCMT	PF01135.19	gi|336251850|ref|YP_004585818.1|	-	0.076	12.8	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DREV	PF05219.12	gi|336251850|ref|YP_004585818.1|	-	0.083	12.0	0.0	0.21	10.6	0.0	1.6	2	0	0	2	2	2	0	DREV	methyltransferase
UPF0020	PF01170.18	gi|336251850|ref|YP_004585818.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.5	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
tRNA_U5-meth_tr	PF05958.11	gi|336251850|ref|YP_004585818.1|	-	0.11	11.4	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
RrnaAD	PF00398.20	gi|336251850|ref|YP_004585818.1|	-	0.19	10.8	0.0	0.27	10.3	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Pyr_redox_2	PF07992.14	gi|336251851|ref|YP_004585819.1|	-	2.4e-21	76.2	0.0	1.2e-19	70.7	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336251851|ref|YP_004585819.1|	-	4.5e-09	36.4	2.0	2.6e-05	24.0	0.3	2.4	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|336251851|ref|YP_004585819.1|	-	2.3e-08	33.2	0.0	7.1e-05	21.7	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|336251851|ref|YP_004585819.1|	-	3.7e-08	32.8	0.3	0.0078	15.3	0.0	2.7	2	1	0	3	3	3	2	Lycopene	cyclase	protein
FAD_binding_2	PF00890.24	gi|336251851|ref|YP_004585819.1|	-	1.1e-07	31.4	0.2	8.4e-07	28.4	0.1	2.3	2	1	0	3	3	3	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|336251851|ref|YP_004585819.1|	-	8.6e-07	29.1	1.2	0.0029	17.6	0.1	2.6	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|336251851|ref|YP_004585819.1|	-	9.8e-07	28.3	4.0	0.011	15.1	0.1	3.0	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|336251851|ref|YP_004585819.1|	-	4.8e-05	22.8	0.2	0.00018	20.9	0.0	1.9	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336251851|ref|YP_004585819.1|	-	0.00064	19.2	0.1	0.00094	18.6	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|336251851|ref|YP_004585819.1|	-	0.0009	18.4	3.2	0.027	13.6	0.2	3.1	3	1	1	4	4	4	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|336251851|ref|YP_004585819.1|	-	0.0026	17.0	0.0	0.0051	16.1	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|336251851|ref|YP_004585819.1|	-	0.0034	17.6	0.1	0.0074	16.5	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|336251851|ref|YP_004585819.1|	-	0.019	13.9	3.0	0.3	9.9	0.1	2.6	3	0	0	3	3	3	0	Tryptophan	halogenase
K_oxygenase	PF13434.6	gi|336251851|ref|YP_004585819.1|	-	0.096	11.8	0.1	3.2	6.8	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Amino_oxidase	PF01593.24	gi|336251851|ref|YP_004585819.1|	-	0.99	8.6	5.3	1	8.6	0.2	2.7	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
TrmB	PF01978.19	gi|336251852|ref|YP_004585820.1|	-	1.2e-11	44.3	0.0	1.9e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|336251852|ref|YP_004585820.1|	-	0.0002	21.2	0.0	0.00046	20.1	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.10	gi|336251852|ref|YP_004585820.1|	-	0.0003	20.5	0.0	0.00049	19.9	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336251852|ref|YP_004585820.1|	-	0.0013	18.8	0.1	0.004	17.2	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251852|ref|YP_004585820.1|	-	0.017	14.7	0.0	0.03	13.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.6	gi|336251852|ref|YP_004585820.1|	-	0.038	14.0	0.0	0.07	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
RuvB_C	PF05491.13	gi|336251852|ref|YP_004585820.1|	-	0.041	13.8	0.0	0.061	13.2	0.0	1.3	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
PadR	PF03551.14	gi|336251852|ref|YP_004585820.1|	-	0.053	13.5	0.1	0.13	12.2	0.0	1.7	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|336251852|ref|YP_004585820.1|	-	0.056	13.3	0.0	0.14	12.1	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_38	PF13936.6	gi|336251852|ref|YP_004585820.1|	-	0.095	12.5	0.1	0.38	10.6	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251852|ref|YP_004585820.1|	-	0.14	12.4	0.1	0.27	11.5	0.1	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|336251852|ref|YP_004585820.1|	-	0.14	12.0	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Phage_integrase	PF00589.22	gi|336251853|ref|YP_004585821.1|	-	2.1e-09	37.4	0.0	5.9e-09	36.0	0.0	1.7	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|336251853|ref|YP_004585821.1|	-	0.00052	20.3	0.0	0.00098	19.4	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|336251853|ref|YP_004585821.1|	-	0.17	12.2	1.1	2.6	8.4	0.0	3.1	3	1	1	4	4	4	0	Phage	integrase,	N-terminal	SAM-like	domain
NAD_binding_10	PF13460.6	gi|336251854|ref|YP_004585822.1|	-	1.7e-28	99.7	0.5	2e-28	99.6	0.5	1.0	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|336251854|ref|YP_004585822.1|	-	0.00015	21.4	0.0	0.00018	21.1	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
TrkA_N	PF02254.18	gi|336251854|ref|YP_004585822.1|	-	0.00035	20.8	0.1	0.00058	20.1	0.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
NmrA	PF05368.13	gi|336251854|ref|YP_004585822.1|	-	0.00072	19.2	0.0	0.00099	18.7	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
RmlD_sub_bind	PF04321.17	gi|336251854|ref|YP_004585822.1|	-	0.0031	16.6	0.1	0.0046	16.1	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DFP	PF04127.15	gi|336251854|ref|YP_004585822.1|	-	0.017	15.0	0.1	0.026	14.4	0.1	1.2	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
ApbA	PF02558.16	gi|336251854|ref|YP_004585822.1|	-	0.047	13.3	0.0	0.064	12.9	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
KR	PF08659.10	gi|336251854|ref|YP_004585822.1|	-	0.06	13.2	0.1	0.12	12.3	0.1	1.5	1	0	0	1	1	1	0	KR	domain
DapB_N	PF01113.20	gi|336251854|ref|YP_004585822.1|	-	0.061	13.4	0.1	0.098	12.8	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.25	gi|336251854|ref|YP_004585822.1|	-	0.075	12.5	0.2	0.14	11.6	0.2	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
DZR	PF12773.7	gi|336251856|ref|YP_004585824.1|	-	4e-05	23.6	1.1	6.1e-05	23.0	1.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336251856|ref|YP_004585824.1|	-	0.00054	19.6	1.1	0.00088	18.9	1.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336251856|ref|YP_004585824.1|	-	0.0014	18.0	1.3	0.0023	17.3	1.3	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336251856|ref|YP_004585824.1|	-	0.024	15.4	0.1	0.033	14.9	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
Nudix_N_2	PF14803.6	gi|336251856|ref|YP_004585824.1|	-	0.026	14.4	0.5	3.1	7.8	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
TM2	PF05154.16	gi|336251856|ref|YP_004585824.1|	-	0.04	14.2	0.2	0.089	13.1	0.2	1.5	1	0	0	1	1	1	0	TM2	domain
zinc-ribbons_6	PF07191.12	gi|336251856|ref|YP_004585824.1|	-	0.051	13.6	0.4	0.073	13.1	0.4	1.2	1	0	0	1	1	1	0	zinc-ribbons
zinc_ribbon_9	PF14369.6	gi|336251856|ref|YP_004585824.1|	-	0.26	11.6	5.1	0.55	10.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon
Rad50_zn_hook	PF04423.14	gi|336251856|ref|YP_004585824.1|	-	1.6	8.6	3.5	0.72	9.7	0.2	1.9	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
TetR_C_6	PF13977.6	gi|336251857|ref|YP_004585825.1|	-	3.1e-11	43.5	1.3	5.7e-11	42.6	0.8	1.6	1	1	1	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|336251857|ref|YP_004585825.1|	-	1.1e-08	34.7	0.0	2.4e-08	33.6	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|336251857|ref|YP_004585825.1|	-	1.9e-05	24.8	0.6	3.9e-05	23.8	0.6	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|336251857|ref|YP_004585825.1|	-	0.00012	22.0	0.3	0.00033	20.7	0.1	1.9	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|336251857|ref|YP_004585825.1|	-	0.0014	18.9	0.1	0.0029	17.9	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|336251857|ref|YP_004585825.1|	-	0.03	14.4	0.0	0.046	13.8	0.0	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|336251857|ref|YP_004585825.1|	-	0.045	13.9	0.2	0.16	12.1	0.1	1.9	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|336251857|ref|YP_004585825.1|	-	0.046	14.3	0.0	0.085	13.5	0.0	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|336251857|ref|YP_004585825.1|	-	0.062	13.3	0.3	0.13	12.3	0.3	1.5	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_25	PF17933.1	gi|336251857|ref|YP_004585825.1|	-	0.063	13.6	0.2	0.2	12.0	0.1	2.0	2	1	1	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
ABC_tran	PF00005.27	gi|336251858|ref|YP_004585826.1|	-	2.1e-33	115.8	0.0	3.2e-33	115.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336251858|ref|YP_004585826.1|	-	2.6e-09	37.3	0.5	0.00027	20.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|336251858|ref|YP_004585826.1|	-	4.1e-05	23.2	0.0	7.5e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4162	PF13732.6	gi|336251858|ref|YP_004585826.1|	-	9.7e-05	23.0	0.0	0.0002	22.0	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
RsgA_GTPase	PF03193.16	gi|336251858|ref|YP_004585826.1|	-	0.0005	20.0	0.0	0.00087	19.2	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|336251858|ref|YP_004585826.1|	-	0.0006	20.4	0.0	0.0009	19.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|336251858|ref|YP_004585826.1|	-	0.013	15.6	0.7	0.046	13.8	0.5	2.3	1	1	1	2	2	2	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|336251858|ref|YP_004585826.1|	-	0.017	15.5	0.1	0.042	14.2	0.0	1.7	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251858|ref|YP_004585826.1|	-	0.027	14.7	0.0	0.17	12.1	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|336251858|ref|YP_004585826.1|	-	0.03	13.7	0.0	1.4	8.3	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|336251858|ref|YP_004585826.1|	-	0.034	13.7	0.0	0.1	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
DUF5428	PF17493.2	gi|336251858|ref|YP_004585826.1|	-	0.077	13.4	0.0	0.2	12.1	0.0	1.7	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5428)
Sucrose_synth	PF00862.19	gi|336251858|ref|YP_004585826.1|	-	0.083	11.2	0.0	0.12	10.7	0.0	1.1	1	0	0	1	1	1	0	Sucrose	synthase
AAA_15	PF13175.6	gi|336251858|ref|YP_004585826.1|	-	0.097	12.4	0.0	0.52	10.0	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336251858|ref|YP_004585826.1|	-	0.099	12.8	0.0	0.31	11.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|336251858|ref|YP_004585826.1|	-	0.13	11.6	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC2_membrane	PF01061.24	gi|336251859|ref|YP_004585827.1|	-	3.8e-38	131.0	15.6	5e-38	130.6	15.6	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|336251859|ref|YP_004585827.1|	-	1.9e-17	63.4	20.7	1.9e-17	63.4	20.7	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336251859|ref|YP_004585827.1|	-	2.3e-08	33.7	21.8	4.4e-08	32.8	21.8	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
YobH	PF13996.6	gi|336251859|ref|YP_004585827.1|	-	0.084	12.9	1.5	0.3	11.2	0.3	2.4	2	0	0	2	2	2	0	YobH-like	protein
OmdA	PF13376.6	gi|336251860|ref|YP_004585828.1|	-	2e-19	69.3	2.9	5.2e-19	68.0	2.9	1.8	1	0	0	1	1	1	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
CBS	PF00571.28	gi|336251861|ref|YP_004585829.1|	-	3.1e-24	85.2	2.0	1.4e-12	47.8	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|336251861|ref|YP_004585829.1|	-	3.1e-13	49.6	10.5	2.6e-08	33.4	0.2	2.6	1	1	1	2	2	2	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|336251861|ref|YP_004585829.1|	-	0.0032	17.2	9.2	0.013	15.2	9.2	2.0	1	1	0	1	1	1	1	Peptidase	M50B-like
Abhydrolase_3	PF07859.13	gi|336251862|ref|YP_004585830.1|	-	1e-70	237.9	0.5	1.2e-70	237.6	0.5	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|336251862|ref|YP_004585830.1|	-	4.5e-09	35.7	0.2	1.5e-08	34.0	0.2	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
Peptidase_S15	PF02129.18	gi|336251862|ref|YP_004585830.1|	-	7.3e-05	22.5	0.0	0.0026	17.4	0.0	2.3	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S9	PF00326.21	gi|336251862|ref|YP_004585830.1|	-	0.0006	19.4	0.1	0.0013	18.2	0.1	1.5	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_6	PF12697.7	gi|336251862|ref|YP_004585830.1|	-	0.0024	18.5	4.8	0.0035	18.0	4.8	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
AXE1	PF05448.12	gi|336251862|ref|YP_004585830.1|	-	0.0065	15.2	0.1	0.63	8.7	0.1	2.1	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Say1_Mug180	PF10340.9	gi|336251862|ref|YP_004585830.1|	-	0.027	13.3	0.0	0.056	12.3	0.0	1.4	1	1	0	1	1	1	0	Steryl	acetyl	hydrolase
Chlorophyllase2	PF12740.7	gi|336251862|ref|YP_004585830.1|	-	0.029	13.3	0.0	0.068	12.1	0.0	1.5	1	1	0	1	1	1	0	Chlorophyllase	enzyme
Chlorophyllase	PF07224.11	gi|336251862|ref|YP_004585830.1|	-	0.15	11.1	0.0	0.23	10.4	0.0	1.2	1	0	0	1	1	1	0	Chlorophyllase
Lipase_3	PF01764.25	gi|336251862|ref|YP_004585830.1|	-	0.17	11.7	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	Lipase	(class	3)
NosL	PF05573.12	gi|336251863|ref|YP_004585831.1|	-	0.042	14.2	0.0	0.051	13.9	0.0	1.3	1	0	0	1	1	1	0	NosL
HTH_10	PF04967.12	gi|336251864|ref|YP_004585832.1|	-	1.2e-14	53.8	0.2	3.6e-14	52.3	0.0	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|336251864|ref|YP_004585832.1|	-	0.00015	21.5	0.0	0.00038	20.2	0.0	1.6	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251864|ref|YP_004585832.1|	-	0.00017	21.4	0.1	0.0007	19.4	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_8	PF02954.19	gi|336251864|ref|YP_004585832.1|	-	0.037	13.8	0.0	0.096	12.5	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_24	PF13412.6	gi|336251864|ref|YP_004585832.1|	-	0.038	13.6	0.0	0.066	12.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336251864|ref|YP_004585832.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_psq	PF05225.16	gi|336251864|ref|YP_004585832.1|	-	0.57	10.0	0.0	0.57	10.0	0.0	2.1	3	0	0	3	3	3	0	helix-turn-helix,	Psq	domain
LUD_dom	PF02589.15	gi|336251865|ref|YP_004585833.1|	-	4.9e-40	137.3	0.1	6e-40	137.0	0.1	1.1	1	0	0	1	1	1	1	LUD	domain
UPF0180	PF03698.13	gi|336251865|ref|YP_004585833.1|	-	0.029	14.5	0.1	0.067	13.4	0.1	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
YcaO	PF02624.16	gi|336251865|ref|YP_004585833.1|	-	0.039	13.2	0.0	0.056	12.7	0.0	1.2	1	0	0	1	1	1	0	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
CHASE2	PF05226.11	gi|336251865|ref|YP_004585833.1|	-	0.11	12.2	0.1	0.11	12.1	0.1	1.2	1	0	0	1	1	1	0	CHASE2	domain
E1-E2_ATPase	PF00122.20	gi|336251867|ref|YP_004585835.1|	-	2.4e-55	186.9	0.3	2.4e-55	186.9	0.3	1.7	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336251867|ref|YP_004585835.1|	-	3.1e-40	138.7	3.0	7.1e-40	137.5	3.0	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336251867|ref|YP_004585835.1|	-	2.4e-17	63.1	0.4	1.2e-16	60.9	0.0	2.4	3	0	0	3	3	3	1	Heavy-metal-associated	domain
HAD	PF12710.7	gi|336251867|ref|YP_004585835.1|	-	0.00053	20.4	0.2	0.0017	18.8	0.2	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|336251867|ref|YP_004585835.1|	-	0.0052	16.6	0.4	0.028	14.1	0.5	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
EccE	PF11203.8	gi|336251867|ref|YP_004585835.1|	-	0.072	13.4	1.1	1.1	9.6	0.0	2.9	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
MCPsignal	PF00015.21	gi|336251868|ref|YP_004585836.1|	-	3e-50	170.4	52.0	6.5e-46	156.3	24.5	3.7	2	1	2	4	4	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Protoglobin	PF11563.8	gi|336251868|ref|YP_004585836.1|	-	5.2e-38	130.4	0.5	2.3e-37	128.3	0.5	2.2	1	1	0	1	1	1	1	Protoglobin
DUF948	PF06103.11	gi|336251868|ref|YP_004585836.1|	-	2.3e-07	30.9	41.4	0.00047	20.4	3.4	5.8	4	3	2	6	6	5	3	Bacterial	protein	of	unknown	function	(DUF948)
Sec8_exocyst	PF04048.14	gi|336251868|ref|YP_004585836.1|	-	8.4e-06	25.7	14.0	0.0017	18.3	0.0	4.1	3	1	1	4	4	4	2	Sec8	exocyst	complex	component	specific	domain
Syntaxin-6_N	PF09177.11	gi|336251868|ref|YP_004585836.1|	-	0.00025	21.5	32.1	0.0024	18.4	3.4	5.5	3	2	2	5	5	5	1	Syntaxin	6,	N-terminal
Laminin_II	PF06009.12	gi|336251868|ref|YP_004585836.1|	-	0.00095	19.2	40.1	0.0015	18.5	2.6	5.6	3	2	3	6	6	6	2	Laminin	Domain	II
DUF1664	PF07889.12	gi|336251868|ref|YP_004585836.1|	-	0.0032	17.5	32.5	0.051	13.6	6.5	5.1	2	1	4	6	6	6	3	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|336251868|ref|YP_004585836.1|	-	0.0039	17.5	34.9	0.16	12.3	0.8	6.1	4	2	1	5	5	5	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Bac_globin	PF01152.21	gi|336251868|ref|YP_004585836.1|	-	0.005	17.0	0.4	0.03	14.5	0.0	2.6	2	0	0	2	2	2	1	Bacterial-like	globin
CorA	PF01544.18	gi|336251868|ref|YP_004585836.1|	-	0.0071	15.7	6.2	0.0071	15.7	6.2	4.2	2	1	1	4	4	4	1	CorA-like	Mg2+	transporter	protein
Fzo_mitofusin	PF04799.13	gi|336251868|ref|YP_004585836.1|	-	0.0074	15.9	26.3	0.0094	15.5	1.1	5.0	3	2	2	5	5	5	1	fzo-like	conserved	region
FAM184	PF15665.5	gi|336251868|ref|YP_004585836.1|	-	0.01	15.6	4.5	0.01	15.6	4.5	4.2	2	1	1	4	4	4	0	Family	with	sequence	similarity	184,	A	and	B
Fib_alpha	PF08702.10	gi|336251868|ref|YP_004585836.1|	-	0.015	15.5	22.8	0.75	10.0	3.9	4.7	3	2	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
PMC2NT	PF08066.12	gi|336251868|ref|YP_004585836.1|	-	0.029	15.0	3.9	0.029	15.0	3.9	4.5	2	2	2	4	4	4	0	PMC2NT	(NUC016)	domain
DASH_Dad2	PF08654.10	gi|336251868|ref|YP_004585836.1|	-	0.031	14.7	2.7	0.031	14.7	2.7	4.7	2	1	3	5	5	4	0	DASH	complex	subunit	Dad2
DUF2935	PF11155.8	gi|336251868|ref|YP_004585836.1|	-	0.033	14.5	3.4	0.78	10.1	0.0	3.5	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF2935)
GLE1	PF07817.13	gi|336251868|ref|YP_004585836.1|	-	0.1	11.8	4.6	0.53	9.4	0.2	3.0	3	0	0	3	3	3	0	GLE1-like	protein
Baculo_PEP_C	PF04513.12	gi|336251868|ref|YP_004585836.1|	-	0.11	12.5	29.7	0.057	13.5	1.9	4.9	3	2	2	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DASH_Dam1	PF08653.10	gi|336251868|ref|YP_004585836.1|	-	0.13	12.0	6.3	6.8	6.6	0.0	4.8	5	0	0	5	5	5	0	DASH	complex	subunit	Dam1
ATG16	PF08614.11	gi|336251868|ref|YP_004585836.1|	-	0.19	11.9	42.5	0.077	13.2	11.1	3.4	3	1	1	4	4	3	0	Autophagy	protein	16	(ATG16)
CK2S	PF15011.6	gi|336251868|ref|YP_004585836.1|	-	0.2	11.5	17.2	3.7	7.4	0.1	4.7	3	2	3	6	6	6	0	Casein	Kinase	2	substrate
NPV_P10	PF05531.12	gi|336251868|ref|YP_004585836.1|	-	0.32	11.5	35.6	16	6.1	1.3	7.0	5	2	2	7	7	6	0	Nucleopolyhedrovirus	P10	protein
HOOK	PF05622.12	gi|336251868|ref|YP_004585836.1|	-	0.36	8.9	30.1	0.31	9.1	11.3	2.3	1	1	1	2	2	2	0	HOOK	protein
Sec5	PF15469.6	gi|336251868|ref|YP_004585836.1|	-	0.39	10.5	10.2	0.16	11.8	3.1	3.3	2	1	2	4	4	4	0	Exocyst	complex	component	Sec5
Med30	PF11315.8	gi|336251868|ref|YP_004585836.1|	-	0.44	10.8	16.5	0.43	10.8	2.9	3.7	3	1	1	4	4	4	0	Mediator	complex	subunit	30
Spc7	PF08317.11	gi|336251868|ref|YP_004585836.1|	-	0.47	9.3	37.0	0.068	12.0	9.7	3.1	2	1	2	4	4	4	0	Spc7	kinetochore	protein
LOH1CR12	PF10158.9	gi|336251868|ref|YP_004585836.1|	-	1.1	9.2	15.1	6	6.9	1.7	4.6	1	1	4	5	5	5	0	Tumour	suppressor	protein
USP8_interact	PF08941.10	gi|336251868|ref|YP_004585836.1|	-	1.3	8.8	8.4	0.5	10.2	0.3	3.1	2	2	1	3	3	3	0	USP8	interacting
Syntaxin_2	PF14523.6	gi|336251868|ref|YP_004585836.1|	-	2.2	8.7	14.7	1.1	9.6	0.2	4.7	2	1	3	5	5	5	0	Syntaxin-like	protein
Mod_r	PF07200.13	gi|336251868|ref|YP_004585836.1|	-	2.5	8.2	32.0	0.45	10.6	1.7	4.6	2	1	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Prominin	PF05478.11	gi|336251868|ref|YP_004585836.1|	-	3.3	5.5	19.9	3.6	5.4	8.2	3.3	2	1	2	4	4	4	0	Prominin
FlgN	PF05130.12	gi|336251868|ref|YP_004585836.1|	-	4.1	7.9	32.5	2.8	8.4	5.0	4.9	2	1	3	5	5	5	0	FlgN	protein
DUF725	PF05267.12	gi|336251868|ref|YP_004585836.1|	-	4.6	7.3	20.4	0.32	11.0	4.0	3.7	3	2	1	4	4	3	0	Protein	of	unknown	function	(DUF725)
AIP3	PF03915.13	gi|336251868|ref|YP_004585836.1|	-	4.8	6.2	30.4	8.1	5.4	8.2	2.7	1	1	1	2	2	2	0	Actin	interacting	protein	3
Sec34	PF04136.15	gi|336251868|ref|YP_004585836.1|	-	5.8	6.8	26.0	0.31	10.9	0.8	5.6	3	2	3	7	7	7	0	Sec34-like	family
TMP_2	PF06791.13	gi|336251868|ref|YP_004585836.1|	-	7	6.3	27.0	0.66	9.6	6.0	3.1	1	1	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
QWRF	PF04484.12	gi|336251868|ref|YP_004585836.1|	-	7.6	6.2	17.5	5.7	6.6	1.0	3.4	2	1	1	3	3	3	0	QWRF	family
DASH_Duo1	PF08651.10	gi|336251868|ref|YP_004585836.1|	-	8.2	6.3	12.3	18	5.2	0.8	5.1	4	1	1	5	5	5	0	DASH	complex	subunit	Duo1
MAD	PF05557.13	gi|336251868|ref|YP_004585836.1|	-	9.8	4.4	29.9	6.7	4.9	12.0	2.3	1	1	0	2	2	2	0	Mitotic	checkpoint	protein
DUF4234	PF14018.6	gi|336251869|ref|YP_004585837.1|	-	0.077	13.1	0.1	0.081	13.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4234)
Usp	PF00582.26	gi|336251870|ref|YP_004585838.1|	-	1.8e-32	112.8	1.5	2e-32	112.6	1.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
GHL6	PF14871.6	gi|336251870|ref|YP_004585838.1|	-	0.043	14.0	0.1	0.056	13.6	0.1	1.2	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
GAF_2	PF13185.6	gi|336251870|ref|YP_004585838.1|	-	0.074	13.3	1.4	0.94	9.8	1.4	2.1	1	1	0	1	1	1	0	GAF	domain
CobU	PF02283.16	gi|336251870|ref|YP_004585838.1|	-	0.088	12.4	0.0	0.14	11.7	0.0	1.4	1	1	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Dodecin	PF07311.12	gi|336251870|ref|YP_004585838.1|	-	0.099	12.9	0.4	1.1	9.6	0.0	2.2	2	1	0	2	2	2	0	Dodecin
GHL10	PF02638.15	gi|336251870|ref|YP_004585838.1|	-	0.18	10.9	0.0	0.19	10.8	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase-like	10
HMA	PF00403.26	gi|336251871|ref|YP_004585839.1|	-	1.3e-18	67.2	0.5	1.4e-18	67.1	0.5	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
HHH	PF00633.23	gi|336251871|ref|YP_004585839.1|	-	0.09	12.7	0.1	0.24	11.3	0.1	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HTH_AsnC-type	PF13404.6	gi|336251872|ref|YP_004585840.1|	-	3.2e-16	58.9	0.5	7e-16	57.8	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251872|ref|YP_004585840.1|	-	2.4e-14	52.6	0.0	4.1e-14	51.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336251872|ref|YP_004585840.1|	-	3.1e-06	27.1	0.0	6e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251872|ref|YP_004585840.1|	-	7.9e-06	25.7	0.0	1.2e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
YHS	PF04945.13	gi|336251872|ref|YP_004585840.1|	-	4e-05	23.6	0.7	6.4e-05	23.0	0.7	1.3	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|336251872|ref|YP_004585840.1|	-	5.6e-05	23.4	2.0	8e-05	22.9	2.0	1.2	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_5	PF01022.20	gi|336251872|ref|YP_004585840.1|	-	5.6e-05	22.9	0.0	8.6e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251872|ref|YP_004585840.1|	-	0.00035	20.4	0.0	0.00076	19.4	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336251872|ref|YP_004585840.1|	-	0.0018	18.0	0.0	0.0035	17.1	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
LIM	PF00412.22	gi|336251872|ref|YP_004585840.1|	-	0.0024	18.1	0.9	0.004	17.3	0.9	1.3	1	0	0	1	1	1	1	LIM	domain
TrmB	PF01978.19	gi|336251872|ref|YP_004585840.1|	-	0.0027	17.6	0.0	0.0046	16.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.16	gi|336251872|ref|YP_004585840.1|	-	0.019	14.4	0.1	0.035	13.6	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
zf-FCS	PF06467.14	gi|336251872|ref|YP_004585840.1|	-	0.02	14.8	3.1	0.037	14.0	3.1	1.5	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ta0938	PF11494.8	gi|336251872|ref|YP_004585840.1|	-	0.039	14.2	0.5	0.084	13.2	0.5	1.5	1	0	0	1	1	1	0	Ta0938
ATPase-cat_bd	PF12156.8	gi|336251872|ref|YP_004585840.1|	-	0.085	13.6	2.5	0.16	12.8	2.5	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_34	PF13601.6	gi|336251872|ref|YP_004585840.1|	-	0.093	12.9	0.0	0.16	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
E1-E2_ATPase	PF00122.20	gi|336251873|ref|YP_004585841.1|	-	2.2e-49	167.4	0.8	5e-49	166.3	0.8	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336251873|ref|YP_004585841.1|	-	6.2e-47	160.6	7.2	7.8e-47	160.3	5.9	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336251873|ref|YP_004585841.1|	-	7.3e-28	96.8	0.0	1.5e-12	47.8	0.0	3.1	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|336251873|ref|YP_004585841.1|	-	5.9e-06	26.2	0.2	0.0076	16.0	0.7	2.9	3	0	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336251873|ref|YP_004585841.1|	-	0.00014	22.4	0.2	0.00041	20.8	0.2	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|336251873|ref|YP_004585841.1|	-	0.0026	17.9	1.3	0.027	14.6	0.0	3.3	5	0	0	5	5	5	1	Haloacid	dehalogenase-like	hydrolase
Usp	PF00582.26	gi|336251874|ref|YP_004585842.1|	-	8e-14	52.3	0.1	1e-13	52.0	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
AIRS	PF00586.24	gi|336251874|ref|YP_004585842.1|	-	0.082	13.6	0.0	0.15	12.8	0.0	1.5	1	1	0	1	1	1	0	AIR	synthase	related	protein,	N-terminal	domain
Tautomerase	PF01361.21	gi|336251874|ref|YP_004585842.1|	-	8.9	6.3	6.2	79	3.3	0.1	3.2	2	1	1	3	3	3	0	Tautomerase	enzyme
Shikimate_dh_N	PF08501.11	gi|336251875|ref|YP_004585843.1|	-	1.6e-25	89.1	0.0	4e-25	87.9	0.0	1.7	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|336251875|ref|YP_004585843.1|	-	8.7e-12	44.6	0.7	2.7e-11	43.0	0.7	1.9	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|336251875|ref|YP_004585843.1|	-	1.1e-10	41.7	0.0	1.7e-10	41.1	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|336251875|ref|YP_004585843.1|	-	0.001	18.4	0.0	0.0017	17.7	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336251875|ref|YP_004585843.1|	-	0.0015	19.0	0.1	0.0032	18.0	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|336251875|ref|YP_004585843.1|	-	0.0075	16.7	0.0	0.011	16.1	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|336251875|ref|YP_004585843.1|	-	0.015	14.9	0.1	0.023	14.3	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
adh_short	PF00106.25	gi|336251875|ref|YP_004585843.1|	-	0.019	14.4	0.3	0.033	13.7	0.3	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|336251875|ref|YP_004585843.1|	-	0.069	12.5	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Pyr_redox_3	PF13738.6	gi|336251875|ref|YP_004585843.1|	-	0.17	11.1	0.0	0.23	10.7	0.0	1.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
IncF	PF17626.2	gi|336251876|ref|YP_004585844.1|	-	0.051	13.9	3.1	0.059	13.7	3.1	1.0	1	0	0	1	1	1	0	Inclusion	membrane	protein	F
DUF2207	PF09972.9	gi|336251876|ref|YP_004585844.1|	-	2.2	6.9	5.2	2.2	6.9	5.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF4175	PF13779.6	gi|336251876|ref|YP_004585844.1|	-	5	4.9	5.4	4.9	4.9	5.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
SPT_ssu-like	PF11779.8	gi|336251876|ref|YP_004585844.1|	-	6.8	6.4	8.4	4.3e+02	0.6	8.4	2.1	1	1	0	1	1	1	0	Small	subunit	of	serine	palmitoyltransferase-like
Glyco_hydro_88	PF07470.13	gi|336251877|ref|YP_004585845.1|	-	3.4e-56	190.8	0.0	5e-56	190.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
C5-epim_C	PF06662.13	gi|336251877|ref|YP_004585845.1|	-	0.03	13.8	0.0	0.26	10.8	0.0	2.3	3	0	0	3	3	3	0	D-glucuronyl	C5-epimerase	C-terminus
SQHop_cyclase_C	PF13243.6	gi|336251877|ref|YP_004585845.1|	-	0.043	12.9	0.0	0.55	9.3	0.0	1.9	1	1	1	2	2	2	0	Squalene-hopene	cyclase	C-terminal	domain
UxuA	PF03786.13	gi|336251878|ref|YP_004585846.1|	-	8e-45	153.2	0.0	2.5e-37	128.5	0.1	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.24	gi|336251878|ref|YP_004585846.1|	-	7.6e-12	45.1	0.0	1.6e-11	44.1	0.0	1.6	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Aft1_OSA	PF11785.8	gi|336251879|ref|YP_004585847.1|	-	1.9	9.0	3.9	13	6.3	0.4	2.2	2	0	0	2	2	2	0	Aft1	osmotic	stress	response	(OSM)	domain
Glyco_hydro_115	PF15979.5	gi|336251880|ref|YP_004585848.1|	-	7.2e-135	449.8	0.0	9.1e-135	449.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	115
GH115_C	PF17829.1	gi|336251880|ref|YP_004585848.1|	-	6e-38	130.4	0.0	1e-37	129.6	0.0	1.4	1	0	0	1	1	1	1	Gylcosyl	hydrolase	family	115	C-terminal	domain
Glyco_hydro_67N	PF03648.14	gi|336251880|ref|YP_004585848.1|	-	0.029	14.6	0.0	0.081	13.2	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	hydrolase	family	67	N-terminus
SBP_bac_5	PF00496.22	gi|336251882|ref|YP_004585850.1|	-	2.1e-35	122.4	7.6	4.9e-35	121.2	3.9	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251882|ref|YP_004585850.1|	-	0.015	15.1	2.2	0.027	14.3	2.2	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SCO1-SenC	PF02630.14	gi|336251882|ref|YP_004585850.1|	-	0.087	12.7	0.1	0.23	11.3	0.1	1.7	1	0	0	1	1	1	0	SCO1/SenC
BPD_transp_1	PF00528.22	gi|336251883|ref|YP_004585851.1|	-	9.1e-33	113.5	13.5	9.1e-33	113.5	13.5	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF996	PF06195.13	gi|336251883|ref|YP_004585851.1|	-	3.7	7.9	14.2	3.3	8.0	4.3	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF996)
BPD_transp_1	PF00528.22	gi|336251884|ref|YP_004585852.1|	-	1.8e-24	86.5	16.9	1.8e-24	86.5	16.9	2.0	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336251884|ref|YP_004585852.1|	-	0.069	13.1	0.1	0.069	13.1	0.1	3.6	4	1	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|336251885|ref|YP_004585853.1|	-	4.2e-51	173.1	0.0	3.3e-27	95.7	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336251885|ref|YP_004585853.1|	-	4e-35	120.1	4.5	1.1e-18	67.5	0.5	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251885|ref|YP_004585853.1|	-	5e-14	52.8	3.6	2.4e-07	30.9	0.6	4.1	3	1	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251885|ref|YP_004585853.1|	-	3.8e-07	29.8	1.7	0.064	12.7	0.0	4.0	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336251885|ref|YP_004585853.1|	-	9.8e-07	29.1	2.7	0.027	14.7	0.5	3.4	2	2	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|336251885|ref|YP_004585853.1|	-	1.3e-05	24.9	0.0	0.16	11.7	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251885|ref|YP_004585853.1|	-	2e-05	25.1	0.0	0.28	11.6	0.0	2.6	2	0	0	2	2	2	2	AAA	ATPase	domain
PhoH	PF02562.16	gi|336251885|ref|YP_004585853.1|	-	4.5e-05	23.0	0.0	0.29	10.5	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.12	gi|336251885|ref|YP_004585853.1|	-	7.4e-05	22.7	0.4	0.36	10.7	0.3	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_25	PF13481.6	gi|336251885|ref|YP_004585853.1|	-	0.00016	21.3	0.0	2.2	7.8	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
IstB_IS21	PF01695.17	gi|336251885|ref|YP_004585853.1|	-	0.0003	20.6	0.1	0.64	9.7	0.0	2.8	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|336251885|ref|YP_004585853.1|	-	0.00036	20.5	0.1	0.19	11.6	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA_24	PF13479.6	gi|336251885|ref|YP_004585853.1|	-	0.00042	20.1	0.2	0.81	9.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336251885|ref|YP_004585853.1|	-	0.0013	18.1	0.1	0.69	9.2	0.1	2.4	2	0	0	2	2	2	1	KaiC
RNA_helicase	PF00910.22	gi|336251885|ref|YP_004585853.1|	-	0.0014	19.0	0.2	1.1	9.7	0.1	2.5	2	0	0	2	2	2	1	RNA	helicase
Sigma54_activat	PF00158.26	gi|336251885|ref|YP_004585853.1|	-	0.0015	18.2	0.0	0.36	10.5	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|336251885|ref|YP_004585853.1|	-	0.0018	17.5	0.0	0.21	10.7	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
AAA_5	PF07728.14	gi|336251885|ref|YP_004585853.1|	-	0.0019	18.2	0.7	1.9	8.5	0.2	2.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|336251885|ref|YP_004585853.1|	-	0.002	18.3	0.2	1	9.5	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|336251885|ref|YP_004585853.1|	-	0.0068	15.9	0.1	4.5	6.7	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_23	PF13476.6	gi|336251885|ref|YP_004585853.1|	-	0.0077	16.8	0.0	1.3	9.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|336251885|ref|YP_004585853.1|	-	0.012	16.0	0.2	1.1	9.7	0.0	2.9	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|336251885|ref|YP_004585853.1|	-	0.013	15.3	0.3	1.4	8.6	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Mg_chelatase	PF01078.21	gi|336251885|ref|YP_004585853.1|	-	0.023	14.1	0.0	5.1	6.4	0.0	2.7	3	0	0	3	3	2	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|336251885|ref|YP_004585853.1|	-	0.028	14.5	0.1	5.1	7.2	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|336251885|ref|YP_004585853.1|	-	0.031	14.0	2.1	8.2	6.0	0.1	3.1	2	1	1	3	3	3	0	AAA	ATPase	domain
MobB	PF03205.14	gi|336251885|ref|YP_004585853.1|	-	0.033	14.1	0.0	7.6	6.4	0.2	2.4	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TsaE	PF02367.17	gi|336251885|ref|YP_004585853.1|	-	0.039	13.9	0.1	1.5	8.8	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Roc	PF08477.13	gi|336251885|ref|YP_004585853.1|	-	0.057	13.6	0.2	2.8	8.2	0.1	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_30	PF13604.6	gi|336251885|ref|YP_004585853.1|	-	0.099	12.3	0.1	4.6	6.9	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.9	gi|336251885|ref|YP_004585853.1|	-	0.14	11.9	0.2	0.47	10.2	0.1	1.8	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Zeta_toxin	PF06414.12	gi|336251885|ref|YP_004585853.1|	-	0.15	11.3	0.0	7.4	5.8	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
Septin	PF00735.18	gi|336251885|ref|YP_004585853.1|	-	0.18	11.1	0.1	1.8	7.8	0.0	2.1	2	0	0	2	2	2	0	Septin
SbcCD_C	PF13558.6	gi|336251885|ref|YP_004585853.1|	-	1.6	9.0	6.4	25	5.2	0.5	4.0	3	2	0	3	3	2	0	Putative	exonuclease	SbcCD,	C	subunit
DUF2628	PF10947.8	gi|336251886|ref|YP_004585854.1|	-	0.0049	17.2	0.1	0.0051	17.1	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2628)
DUF2518	PF10726.9	gi|336251886|ref|YP_004585854.1|	-	0.043	13.5	2.2	0.048	13.3	2.2	1.1	1	0	0	1	1	1	0	Protein	of	function	(DUF2518)
FA_desaturase	PF00487.24	gi|336251886|ref|YP_004585854.1|	-	0.054	13.3	0.3	0.058	13.2	0.3	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
DUF2207	PF09972.9	gi|336251886|ref|YP_004585854.1|	-	0.14	10.9	1.0	0.14	10.9	1.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2892	PF11127.8	gi|336251886|ref|YP_004585854.1|	-	3.6	7.7	11.2	5	7.2	11.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
RGI_lyase	PF18370.1	gi|336251887|ref|YP_004585855.1|	-	2.6e-31	107.8	0.0	5.3e-31	106.8	0.0	1.5	1	0	0	1	1	1	1	Rhamnogalacturonan	I	lyases	beta-sheet	domain
FG-GAP	PF01839.23	gi|336251887|ref|YP_004585855.1|	-	1.2e-09	38.1	19.6	0.00068	19.7	1.5	5.1	5	0	0	5	5	5	3	FG-GAP	repeat
VCBS	PF13517.6	gi|336251887|ref|YP_004585855.1|	-	1.8e-06	28.4	16.2	0.18	12.4	0.0	5.2	4	1	1	5	5	5	4	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
TcdB_toxin_midN	PF12256.8	gi|336251887|ref|YP_004585855.1|	-	0.0023	17.3	4.1	1.3	8.3	0.1	3.2	2	1	1	3	3	3	2	Insecticide	toxin	TcdB	middle/N-terminal	region
EF-hand_1	PF00036.32	gi|336251887|ref|YP_004585855.1|	-	6	6.7	7.6	45	3.9	0.2	4.4	4	0	0	4	4	4	0	EF	hand
CarboxypepD_reg	PF13620.6	gi|336251888|ref|YP_004585856.1|	-	3.6e-07	30.3	0.0	7.2e-07	29.4	0.0	1.5	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
PEGA	PF08308.11	gi|336251888|ref|YP_004585856.1|	-	3.7e-05	23.5	0.2	8.9e-05	22.3	0.1	1.7	2	0	0	2	2	2	1	PEGA	domain
Invasin_D3	PF09134.10	gi|336251888|ref|YP_004585856.1|	-	0.012	15.9	0.1	0.021	15.1	0.1	1.4	1	0	0	1	1	1	0	Invasin,	domain	3
YtkA	PF13115.6	gi|336251888|ref|YP_004585856.1|	-	0.064	13.9	2.4	0.76	10.4	0.4	2.1	2	0	0	2	2	2	0	YtkA-like
Glyco_hydro_4	PF02056.16	gi|336251889|ref|YP_004585857.1|	-	1.3e-49	168.3	0.0	1.9e-49	167.7	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|336251889|ref|YP_004585857.1|	-	2.7e-46	158.3	0.0	4e-46	157.7	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
AP_endonuc_2	PF01261.24	gi|336251890|ref|YP_004585858.1|	-	1.7e-33	115.9	0.5	2.8e-33	115.2	0.5	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
LAL_C2	PF18603.1	gi|336251890|ref|YP_004585858.1|	-	0.093	12.9	1.6	0.23	11.6	0.1	2.5	3	0	0	3	3	3	0	L-amino	acid	ligase	C-terminal	domain	2
GFO_IDH_MocA	PF01408.22	gi|336251891|ref|YP_004585859.1|	-	3.3e-19	69.9	0.1	5.5e-19	69.2	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
FAA_hydrolase	PF01557.18	gi|336251892|ref|YP_004585860.1|	-	9.3e-70	234.7	0.0	1.1e-69	234.4	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|336251892|ref|YP_004585860.1|	-	0.0077	17.1	0.0	0.021	15.7	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2437)
Amidohydro_2	PF04909.14	gi|336251893|ref|YP_004585861.1|	-	5.1e-26	92.1	11.3	5.9e-26	91.9	11.3	1.0	1	0	0	1	1	1	1	Amidohydrolase
Peptidase_M19	PF01244.21	gi|336251893|ref|YP_004585861.1|	-	0.19	10.9	0.0	0.29	10.3	0.0	1.3	1	0	0	1	1	1	0	Membrane	dipeptidase	(Peptidase	family	M19)
ADH_N	PF08240.12	gi|336251894|ref|YP_004585862.1|	-	1.9e-31	108.1	1.6	1.9e-31	108.1	1.6	2.0	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336251894|ref|YP_004585862.1|	-	9.9e-19	67.6	0.2	1.7e-18	66.8	0.2	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|336251894|ref|YP_004585862.1|	-	2.5e-11	43.5	0.1	3.8e-11	42.9	0.1	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|336251894|ref|YP_004585862.1|	-	3e-08	34.8	0.0	6.1e-08	33.8	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
MR_MLE_C	PF13378.6	gi|336251895|ref|YP_004585863.1|	-	1.7e-61	207.6	1.4	2.7e-61	206.9	1.4	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251895|ref|YP_004585863.1|	-	2.9e-19	69.4	0.2	5.2e-19	68.6	0.2	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Bac_luciferase	PF00296.20	gi|336251896|ref|YP_004585864.1|	-	2.4e-58	198.0	0.2	4.4e-58	197.2	0.2	1.3	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
adh_short_C2	PF13561.6	gi|336251897|ref|YP_004585865.1|	-	1e-64	218.3	2.3	1.3e-64	218.0	2.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251897|ref|YP_004585865.1|	-	1.1e-49	168.6	0.5	1.4e-49	168.2	0.5	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251897|ref|YP_004585865.1|	-	4.5e-13	49.5	0.2	7e-13	48.9	0.2	1.3	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336251897|ref|YP_004585865.1|	-	3.4e-05	23.4	0.1	5.4e-05	22.8	0.1	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
2-Hacid_dh_C	PF02826.19	gi|336251897|ref|YP_004585865.1|	-	0.021	14.2	0.0	0.034	13.5	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Amidase_2	PF01510.25	gi|336251897|ref|YP_004585865.1|	-	0.052	14.0	0.0	0.093	13.2	0.0	1.4	1	1	0	1	1	1	0	N-acetylmuramoyl-L-alanine	amidase
THF_DHG_CYH_C	PF02882.19	gi|336251897|ref|YP_004585865.1|	-	0.093	12.0	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Glyco_hydro_43	PF04616.14	gi|336251898|ref|YP_004585866.1|	-	8.1e-11	41.8	8.6	2.1e-09	37.1	4.4	2.5	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	43
BNR_2	PF13088.6	gi|336251898|ref|YP_004585866.1|	-	0.0011	18.4	1.2	0.0017	17.7	1.1	1.4	1	1	0	1	1	1	1	BNR	repeat-like	domain
Glyco_hydro_43	PF04616.14	gi|336251899|ref|YP_004585867.1|	-	3.9e-07	29.7	0.1	1.7e-06	27.6	0.1	1.8	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	43
Glyco_hydro_32N	PF00251.20	gi|336251899|ref|YP_004585867.1|	-	0.00027	20.6	0.0	0.017	14.7	0.0	2.4	2	0	0	2	2	2	2	Glycosyl	hydrolases	family	32	N-terminal	domain
Pectate_lyase22	PF14583.6	gi|336251900|ref|YP_004585868.1|	-	3.7e-35	121.3	0.5	1.6e-29	102.8	0.0	2.0	2	0	0	2	2	2	2	Oligogalacturonate	lyase
PD40	PF07676.12	gi|336251900|ref|YP_004585868.1|	-	1.6e-06	27.9	8.6	0.012	15.6	0.9	3.0	2	1	0	2	2	2	2	WD40-like	Beta	Propeller	Repeat
RicinB_lectin_2	PF14200.6	gi|336251901|ref|YP_004585869.1|	-	3.8e-22	78.8	1.2	1.2e-11	45.2	0.1	4.5	3	2	3	6	6	6	4	Ricin-type	beta-trefoil	lectin	domain-like
Beta_helix	PF13229.6	gi|336251901|ref|YP_004585869.1|	-	1.3e-07	31.6	26.4	1.2e-05	25.2	10.4	2.7	1	1	2	3	3	3	3	Right	handed	beta	helix	region
Glyco_hydro_28	PF00295.17	gi|336251902|ref|YP_004585870.1|	-	5.7e-26	91.3	0.0	1.5e-19	70.2	0.0	2.3	2	0	0	2	2	2	2	Glycosyl	hydrolases	family	28
Beta_helix	PF13229.6	gi|336251902|ref|YP_004585870.1|	-	1.8e-11	44.1	0.3	4e-09	36.5	0.3	3.3	1	1	0	2	2	2	1	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|336251902|ref|YP_004585870.1|	-	2.1e-08	34.3	0.0	0.002	18.0	0.0	2.6	3	0	0	3	3	3	2	Pectate	lyase	superfamily	protein
NosD	PF05048.13	gi|336251902|ref|YP_004585870.1|	-	0.0025	17.1	0.0	0.0075	15.6	0.0	1.8	1	0	0	1	1	1	1	Periplasmic	copper-binding	protein	(NosD)
ssDBP_DBD	PF18361.1	gi|336251902|ref|YP_004585870.1|	-	0.025	14.7	0.0	0.051	13.7	0.0	1.4	1	0	0	1	1	1	0	Single	stranded	DNA-binding	protein	ss	DNA	binding	domain
Adeno_E1B_55K	PF01696.17	gi|336251902|ref|YP_004585870.1|	-	0.061	12.0	0.2	0.11	11.2	0.2	1.4	1	0	0	1	1	1	0	Adenovirus	EB1	55K	protein	/	large	t-antigen
Bac_rhamnosid6H	PF17389.2	gi|336251903|ref|YP_004585871.1|	-	1.7e-38	132.7	0.0	2.4e-38	132.3	0.0	1.1	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Bac_rhamnosid_N	PF08531.10	gi|336251903|ref|YP_004585871.1|	-	4.9e-22	78.6	0.0	1.4e-21	77.1	0.0	1.8	1	0	0	1	1	1	1	Alpha-L-rhamnosidase	N-terminal	domain
Bac_rhamnosid_C	PF17390.2	gi|336251903|ref|YP_004585871.1|	-	2.2e-11	43.4	0.0	4.7e-11	42.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	C-terminal	domain
Bac_rhamnosid	PF05592.11	gi|336251903|ref|YP_004585871.1|	-	1.6e-10	40.8	0.0	3.3e-10	39.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	concanavalin-like	domain
Glyco_hydro_36	PF17167.4	gi|336251903|ref|YP_004585871.1|	-	0.0089	14.8	0.0	0.014	14.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
MCPsignal	PF00015.21	gi|336251904|ref|YP_004585872.1|	-	6.4e-41	140.0	58.3	4.2e-40	137.4	21.9	5.3	2	1	3	5	5	5	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Laminin_II	PF06009.12	gi|336251904|ref|YP_004585872.1|	-	1.6e-06	28.2	33.3	0.0035	17.4	0.9	5.5	2	2	2	5	5	5	4	Laminin	Domain	II
dCache_1	PF02743.18	gi|336251904|ref|YP_004585872.1|	-	0.00022	21.1	0.6	0.00022	21.1	0.6	3.0	3	1	0	3	3	3	1	Cache	domain
HAMP	PF00672.25	gi|336251904|ref|YP_004585872.1|	-	0.00033	21.0	8.2	0.00093	19.5	1.6	6.2	6	1	1	7	7	6	2	HAMP	domain
Spectrin	PF00435.21	gi|336251904|ref|YP_004585872.1|	-	0.0017	18.8	16.6	1.1	9.8	0.7	5.2	3	2	2	5	5	5	1	Spectrin	repeat
ATP-synt_B	PF00430.18	gi|336251904|ref|YP_004585872.1|	-	0.0034	17.5	9.1	0.0034	17.5	9.1	5.0	4	1	1	5	5	4	1	ATP	synthase	B/B'	CF(0)
DUF948	PF06103.11	gi|336251904|ref|YP_004585872.1|	-	0.004	17.4	40.9	0.031	14.5	4.0	7.4	4	2	2	7	7	6	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|336251904|ref|YP_004585872.1|	-	0.0093	16.0	30.7	0.8	9.8	5.7	5.9	2	2	4	6	6	6	3	Protein	of	unknown	function	(DUF1664)
ApoLp-III	PF07464.11	gi|336251904|ref|YP_004585872.1|	-	0.019	15.0	2.7	0.019	15.0	2.7	5.7	3	3	3	6	6	6	0	Apolipophorin-III	precursor	(apoLp-III)
bZIP_1	PF00170.21	gi|336251904|ref|YP_004585872.1|	-	0.048	13.8	1.0	0.53	10.4	0.0	3.2	4	0	0	4	4	3	0	bZIP	transcription	factor
NPV_P10	PF05531.12	gi|336251904|ref|YP_004585872.1|	-	0.053	14.0	27.4	0.13	12.8	0.2	5.9	3	2	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
TSNAXIP1_N	PF15739.5	gi|336251904|ref|YP_004585872.1|	-	0.075	13.4	18.3	0.8	10.1	0.3	5.1	4	1	0	5	5	5	0	Translin-associated	factor	X-interacting	N-terminus
DASH_Duo1	PF08651.10	gi|336251904|ref|YP_004585872.1|	-	0.085	12.6	9.6	3.9	7.3	0.4	5.0	6	0	0	6	6	5	0	DASH	complex	subunit	Duo1
Ran-binding	PF05508.11	gi|336251904|ref|YP_004585872.1|	-	0.1	11.5	18.3	0.32	9.9	3.4	3.8	2	1	2	4	4	4	0	RanGTP-binding	protein
AAA_13	PF13166.6	gi|336251904|ref|YP_004585872.1|	-	0.12	11.0	28.5	0.1	11.2	7.5	2.8	1	1	1	2	2	2	0	AAA	domain
RPW8	PF05659.11	gi|336251904|ref|YP_004585872.1|	-	0.13	12.0	8.7	2.3	7.9	0.1	4.5	3	2	2	5	5	5	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
PI3K_P85_iSH2	PF16454.5	gi|336251904|ref|YP_004585872.1|	-	0.16	11.5	4.9	0.82	9.3	0.2	2.9	3	0	0	3	3	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
BLOC1_2	PF10046.9	gi|336251904|ref|YP_004585872.1|	-	0.17	12.2	28.6	1.1	9.6	0.1	6.9	3	2	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Med30	PF11315.8	gi|336251904|ref|YP_004585872.1|	-	0.18	12.0	6.9	7.5	6.7	0.5	3.5	3	0	0	3	3	3	0	Mediator	complex	subunit	30
Prominin	PF05478.11	gi|336251904|ref|YP_004585872.1|	-	0.19	9.6	8.9	2.6	5.9	0.6	3.3	1	1	1	3	3	3	0	Prominin
Spc7	PF08317.11	gi|336251904|ref|YP_004585872.1|	-	0.24	10.2	30.8	0.26	10.1	2.6	3.3	2	1	1	3	3	3	0	Spc7	kinetochore	protein
TPR_MLP1_2	PF07926.12	gi|336251904|ref|YP_004585872.1|	-	0.41	10.7	33.2	0.23	11.5	2.7	4.6	3	1	1	4	4	4	0	TPR/MLP1/MLP2-like	protein
DUF2203	PF09969.9	gi|336251904|ref|YP_004585872.1|	-	0.41	11.4	27.0	1.9	9.2	2.3	5.4	3	1	1	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
CENP-F_leu_zip	PF10473.9	gi|336251904|ref|YP_004585872.1|	-	0.46	10.5	29.8	0.03	14.4	4.9	4.7	2	2	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Sec34	PF04136.15	gi|336251904|ref|YP_004585872.1|	-	0.57	10.0	10.7	15	5.4	0.3	5.0	2	2	3	6	6	6	0	Sec34-like	family
DUF2913	PF11140.8	gi|336251904|ref|YP_004585872.1|	-	0.63	9.8	2.0	3.8	7.2	0.1	3.0	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF2913)
Fzo_mitofusin	PF04799.13	gi|336251904|ref|YP_004585872.1|	-	1.1	8.8	13.0	2.1	7.9	0.1	4.8	3	2	2	5	5	5	0	fzo-like	conserved	region
Serine_rich	PF08824.10	gi|336251904|ref|YP_004585872.1|	-	1.2	9.1	9.8	0.18	11.8	0.4	3.3	2	1	1	3	3	3	0	Serine	rich	protein	interaction	domain
Rootletin	PF15035.6	gi|336251904|ref|YP_004585872.1|	-	1.3	9.0	16.8	0.28	11.2	5.7	3.6	2	1	1	3	3	3	0	Ciliary	rootlet	component,	centrosome	cohesion
Mce4_CUP1	PF11887.8	gi|336251904|ref|YP_004585872.1|	-	2	7.8	15.8	0.93	8.9	2.6	2.9	3	0	0	3	3	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Atg14	PF10186.9	gi|336251904|ref|YP_004585872.1|	-	2.4	7.2	9.0	3.7	6.5	0.1	3.2	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
HMMR_N	PF15905.5	gi|336251904|ref|YP_004585872.1|	-	3.2	7.1	23.1	2.8	7.4	5.6	3.9	2	2	2	4	4	4	0	Hyaluronan	mediated	motility	receptor	N-terminal
YabA	PF06156.13	gi|336251904|ref|YP_004585872.1|	-	3.7	8.3	16.9	37	5.0	0.5	5.4	2	2	3	5	5	5	0	Initiation	control	protein	YabA
SKA1	PF07160.12	gi|336251904|ref|YP_004585872.1|	-	7.4	6.4	9.1	1.3	8.8	0.7	3.2	2	1	2	4	4	4	0	Spindle	and	kinetochore-associated	protein	1
Baculo_PEP_C	PF04513.12	gi|336251904|ref|YP_004585872.1|	-	9.3	6.3	20.9	1.8	8.6	1.4	5.0	2	2	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF2264	PF10022.9	gi|336251905|ref|YP_004585873.1|	-	8e-125	416.6	0.1	1e-124	416.2	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2264)
CBM9_2	PF16011.5	gi|336251906|ref|YP_004585874.1|	-	4.6e-29	101.5	0.0	5.9e-29	101.2	0.0	1.1	1	0	0	1	1	1	1	Carbohydrate-binding	family	9
CBM9_1	PF06452.11	gi|336251906|ref|YP_004585874.1|	-	3.9e-08	33.4	0.2	2.5e-07	30.8	0.2	2.2	1	1	0	1	1	1	1	Carbohydrate	family	9	binding	domain-like
rhaM	PF05336.13	gi|336251907|ref|YP_004585875.1|	-	4.1e-14	52.6	0.1	4.6e-14	52.4	0.1	1.0	1	0	0	1	1	1	1	L-rhamnose	mutarotase
DUF1654	PF07867.11	gi|336251907|ref|YP_004585875.1|	-	0.21	11.4	2.2	0.29	10.9	1.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1654)
Glyco_hydro_2_C	PF02836.17	gi|336251908|ref|YP_004585876.1|	-	1.7e-107	359.0	0.0	2.7e-107	358.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Bgal_small_N	PF02929.17	gi|336251908|ref|YP_004585876.1|	-	2e-73	247.0	0.0	3.5e-73	246.2	0.0	1.4	1	0	0	1	1	1	1	Beta	galactosidase	small	chain
Glyco_hydro_2_N	PF02837.18	gi|336251908|ref|YP_004585876.1|	-	4.2e-52	176.5	0.4	8.1e-52	175.5	0.4	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
DUF4981	PF16353.5	gi|336251908|ref|YP_004585876.1|	-	1e-28	99.6	0.1	1.4e-26	92.8	0.0	3.0	2	0	0	2	2	2	1	Domain	of	unknown	function(DUF4981)
Glyco_hydro_2	PF00703.21	gi|336251908|ref|YP_004585876.1|	-	7.3e-21	74.9	0.1	2.4e-20	73.2	0.1	2.0	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
Fn3-like	PF14310.6	gi|336251908|ref|YP_004585876.1|	-	4e-05	23.6	0.5	0.11	12.6	0.0	4.5	4	1	1	5	5	5	1	Fibronectin	type	III-like	domain
BetaGal_dom4_5	PF13364.6	gi|336251908|ref|YP_004585876.1|	-	0.0066	17.0	0.2	0.022	15.3	0.2	1.9	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
Inositol_P	PF00459.25	gi|336251910|ref|YP_004585878.1|	-	1.1e-48	166.1	0.0	1.2e-48	166.0	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
Inositol_P	PF00459.25	gi|336251911|ref|YP_004585879.1|	-	1.9e-60	204.7	0.0	2.3e-60	204.4	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|336251911|ref|YP_004585879.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase,	N-terminal	domain
CbiQ	PF02361.16	gi|336251912|ref|YP_004585880.1|	-	5.3e-10	39.3	12.6	1.3e-09	38.0	12.6	1.6	1	1	0	1	1	1	1	Cobalt	transport	protein
DUF21	PF01595.20	gi|336251912|ref|YP_004585880.1|	-	0.75	9.5	7.2	1.1	8.9	5.1	2.1	2	1	0	2	2	2	0	Cyclin	M	transmembrane	N-terminal	domain
ABC_tran	PF00005.27	gi|336251913|ref|YP_004585881.1|	-	3.5e-52	176.5	0.0	4.1e-26	92.1	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|336251913|ref|YP_004585881.1|	-	9.4e-19	68.3	9.6	5.9e-05	23.0	0.2	4.3	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251913|ref|YP_004585881.1|	-	1.4e-12	47.5	0.4	0.0048	16.4	0.0	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.6	gi|336251913|ref|YP_004585881.1|	-	1.3e-08	34.1	0.0	0.017	13.8	0.0	3.1	3	0	0	3	3	3	3	AAA	domain
AAA_29	PF13555.6	gi|336251913|ref|YP_004585881.1|	-	9e-08	31.7	0.0	0.021	14.6	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|336251913|ref|YP_004585881.1|	-	3.5e-07	30.9	0.0	0.0085	16.6	0.0	2.5	2	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|336251913|ref|YP_004585881.1|	-	2.8e-06	27.3	0.2	0.023	14.4	0.0	3.4	4	0	0	4	4	4	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336251913|ref|YP_004585881.1|	-	3.5e-06	27.5	0.0	0.03	14.7	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_28	PF13521.6	gi|336251913|ref|YP_004585881.1|	-	1.9e-05	25.0	4.1	0.27	11.4	1.4	3.8	3	1	0	3	3	2	2	AAA	domain
AAA_22	PF13401.6	gi|336251913|ref|YP_004585881.1|	-	2.2e-05	24.8	0.4	0.17	12.1	0.5	3.3	2	1	0	2	2	2	1	AAA	domain
DUF3584	PF12128.8	gi|336251913|ref|YP_004585881.1|	-	4.2e-05	21.3	0.3	0.0076	13.8	0.0	2.4	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF3584)
MMR_HSR1	PF01926.23	gi|336251913|ref|YP_004585881.1|	-	5.6e-05	23.2	0.3	0.005	16.9	0.1	2.9	3	1	0	3	3	2	1	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|336251913|ref|YP_004585881.1|	-	7.3e-05	22.6	0.0	0.048	13.4	0.0	2.8	3	0	0	3	3	2	1	AAA	domain
AAA_30	PF13604.6	gi|336251913|ref|YP_004585881.1|	-	0.00049	19.9	0.0	1.1	8.9	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|336251913|ref|YP_004585881.1|	-	0.00058	19.5	2.3	1.5	8.4	0.2	4.0	2	1	1	3	3	3	1	AAA	domain
AAA_18	PF13238.6	gi|336251913|ref|YP_004585881.1|	-	0.00081	19.9	0.0	1.4	9.5	0.0	3.0	3	0	0	3	3	2	1	AAA	domain
NACHT	PF05729.12	gi|336251913|ref|YP_004585881.1|	-	0.0012	18.7	0.8	1.3	8.9	0.0	2.3	2	0	0	2	2	2	2	NACHT	domain
NB-ARC	PF00931.22	gi|336251913|ref|YP_004585881.1|	-	0.0013	18.0	0.0	0.22	10.7	0.0	2.2	2	0	0	2	2	2	1	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|336251913|ref|YP_004585881.1|	-	0.0016	18.4	0.0	0.14	12.1	0.0	2.5	2	0	0	2	2	2	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|336251913|ref|YP_004585881.1|	-	0.0024	17.2	0.0	0.14	11.4	0.0	2.5	2	0	0	2	2	2	1	Zeta	toxin
KdpD	PF02702.17	gi|336251913|ref|YP_004585881.1|	-	0.0026	17.3	0.7	0.012	15.1	0.0	2.4	3	0	0	3	3	3	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
G-alpha	PF00503.20	gi|336251913|ref|YP_004585881.1|	-	0.0049	16.1	0.0	0.95	8.5	0.0	2.2	2	0	0	2	2	2	1	G-protein	alpha	subunit
PduV-EutP	PF10662.9	gi|336251913|ref|YP_004585881.1|	-	0.0061	16.3	0.1	1.1	9.1	0.0	2.5	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
ATPase	PF06745.13	gi|336251913|ref|YP_004585881.1|	-	0.0094	15.3	0.0	0.16	11.3	0.0	2.6	3	0	0	3	3	3	1	KaiC
AAA	PF00004.29	gi|336251913|ref|YP_004585881.1|	-	0.015	15.8	0.4	5.9	7.3	0.0	3.4	2	2	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DLIC	PF05783.11	gi|336251913|ref|YP_004585881.1|	-	0.015	14.2	0.0	1.6	7.5	0.0	2.1	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
AAA_27	PF13514.6	gi|336251913|ref|YP_004585881.1|	-	0.017	14.7	0.0	1.5	8.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|336251913|ref|YP_004585881.1|	-	0.019	15.2	0.0	7.3	6.8	0.0	2.6	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NTPase_1	PF03266.15	gi|336251913|ref|YP_004585881.1|	-	0.023	14.6	0.3	4.8	7.1	0.0	3.0	3	0	0	3	3	3	0	NTPase
MukB	PF04310.12	gi|336251913|ref|YP_004585881.1|	-	0.024	14.4	0.0	2	8.2	0.0	2.3	2	0	0	2	2	2	0	MukB	N-terminal
TsaE	PF02367.17	gi|336251913|ref|YP_004585881.1|	-	0.025	14.6	0.0	11	6.1	0.0	2.6	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Mg_chelatase	PF01078.21	gi|336251913|ref|YP_004585881.1|	-	0.03	13.7	0.0	1.8	7.9	0.0	2.4	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
SpoOE-like	PF09388.10	gi|336251913|ref|YP_004585881.1|	-	0.031	14.2	2.7	0.14	12.1	0.1	2.4	2	0	0	2	2	2	0	Spo0E	like	sporulation	regulatory	protein
AAA_14	PF13173.6	gi|336251913|ref|YP_004585881.1|	-	0.031	14.3	0.0	8.7	6.4	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|336251913|ref|YP_004585881.1|	-	0.031	13.9	0.1	8.7	5.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.6	gi|336251913|ref|YP_004585881.1|	-	0.032	14.4	0.1	2.1	8.5	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|336251913|ref|YP_004585881.1|	-	0.034	13.5	0.0	5.9	6.2	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
ATP_bind_1	PF03029.17	gi|336251913|ref|YP_004585881.1|	-	0.038	13.8	0.6	0.85	9.4	0.2	2.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_17	PF13207.6	gi|336251913|ref|YP_004585881.1|	-	0.041	14.3	0.5	4.3	7.8	0.5	2.8	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|336251913|ref|YP_004585881.1|	-	0.045	13.8	0.0	11	6.0	0.0	2.8	3	0	0	3	3	2	0	Helicase	HerA,	central	domain
IstB_IS21	PF01695.17	gi|336251913|ref|YP_004585881.1|	-	0.061	13.0	0.0	14	5.4	0.0	3.1	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|336251913|ref|YP_004585881.1|	-	0.078	12.0	0.1	7.5	5.5	0.0	3.0	3	0	0	3	3	3	0	Type	II/IV	secretion	system	protein
RNA_helicase	PF00910.22	gi|336251913|ref|YP_004585881.1|	-	0.088	13.2	0.0	21	5.6	0.0	2.4	2	0	0	2	2	2	0	RNA	helicase
Pox_A32	PF04665.12	gi|336251913|ref|YP_004585881.1|	-	0.14	11.6	0.1	3.1	7.2	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
MobB	PF03205.14	gi|336251913|ref|YP_004585881.1|	-	0.24	11.3	0.5	31	4.5	0.0	3.1	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.19	gi|336251913|ref|YP_004585881.1|	-	0.26	10.9	2.5	5.3	6.6	0.1	2.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
PNISR	PF15996.5	gi|336251915|ref|YP_004585883.1|	-	0.22	11.7	10.1	0.25	11.6	10.1	1.2	1	0	0	1	1	1	0	Arginine/serine-rich	protein	PNISR
Apt1	PF10351.9	gi|336251915|ref|YP_004585883.1|	-	0.43	9.4	10.4	0.43	9.4	10.4	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
Dicty_REP	PF05086.12	gi|336251915|ref|YP_004585883.1|	-	1.6	6.6	7.0	1.4	6.8	7.0	1.0	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
SAPS	PF04499.15	gi|336251915|ref|YP_004585883.1|	-	1.7	7.3	10.9	1.8	7.3	10.9	1.2	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
Macoilin	PF09726.9	gi|336251915|ref|YP_004585883.1|	-	2	6.9	6.1	2	6.9	6.1	1.1	1	0	0	1	1	1	0	Macoilin	family
Presenilin	PF01080.17	gi|336251915|ref|YP_004585883.1|	-	3.7	6.2	10.7	3.9	6.2	10.7	1.1	1	0	0	1	1	1	0	Presenilin
CDC45	PF02724.14	gi|336251915|ref|YP_004585883.1|	-	4.1	5.6	15.6	4.5	5.5	15.6	1.1	1	0	0	1	1	1	0	CDC45-like	protein
RAP1	PF07218.11	gi|336251915|ref|YP_004585883.1|	-	4.6	5.4	7.8	5.2	5.2	7.8	1.0	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
Peroxin-3	PF04882.12	gi|336251915|ref|YP_004585883.1|	-	4.9	6.0	11.0	6.7	5.6	11.0	1.2	1	0	0	1	1	1	0	Peroxin-3
GREB1	PF15782.5	gi|336251915|ref|YP_004585883.1|	-	7.3	3.6	9.5	7.7	3.5	9.5	1.0	1	0	0	1	1	1	0	Gene	regulated	by	oestrogen	in	breast	cancer
SDA1	PF05285.12	gi|336251915|ref|YP_004585883.1|	-	9.3	5.6	21.1	10	5.4	21.1	1.1	1	0	0	1	1	1	0	SDA1
AAA_31	PF13614.6	gi|336251916|ref|YP_004585884.1|	-	4.3e-29	101.7	0.0	5.8e-29	101.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|336251916|ref|YP_004585884.1|	-	1.3e-11	44.6	0.0	1.9e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|336251916|ref|YP_004585884.1|	-	6.9e-06	25.7	0.0	0.00032	20.3	0.0	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|336251916|ref|YP_004585884.1|	-	1.5e-05	24.5	0.2	2.7e-05	23.7	0.3	1.5	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|336251916|ref|YP_004585884.1|	-	0.00038	20.0	0.0	0.0041	16.6	0.0	2.4	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|336251916|ref|YP_004585884.1|	-	0.00045	19.6	0.1	0.023	14.0	0.0	2.3	2	0	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|336251916|ref|YP_004585884.1|	-	0.0043	16.3	0.5	0.029	13.6	0.0	2.3	3	0	0	3	3	3	1	Anion-transporting	ATPase
AAA_25	PF13481.6	gi|336251916|ref|YP_004585884.1|	-	0.11	12.1	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
VirC1	PF07015.11	gi|336251916|ref|YP_004585884.1|	-	0.16	11.2	0.0	0.36	10.1	0.0	1.5	1	0	0	1	1	1	0	VirC1	protein
ABC_tran	PF00005.27	gi|336251917|ref|YP_004585885.1|	-	5.2e-51	172.8	0.0	1e-26	94.1	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336251917|ref|YP_004585885.1|	-	1.9e-33	114.8	0.7	9.6e-18	64.5	0.1	2.6	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251917|ref|YP_004585885.1|	-	8.5e-17	61.9	0.2	1.4e-07	31.6	0.3	4.2	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251917|ref|YP_004585885.1|	-	7.5e-07	28.8	1.2	0.068	12.6	0.0	4.2	3	1	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|336251917|ref|YP_004585885.1|	-	5.5e-06	26.2	0.0	0.75	9.5	0.0	3.3	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|336251917|ref|YP_004585885.1|	-	1.1e-05	25.1	0.0	0.16	11.7	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|336251917|ref|YP_004585885.1|	-	1.1e-05	25.1	0.0	0.27	10.8	0.0	3.4	3	0	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|336251917|ref|YP_004585885.1|	-	4.3e-05	24.0	0.0	0.57	10.6	0.0	2.7	2	1	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.12	gi|336251917|ref|YP_004585885.1|	-	0.00014	21.9	0.7	0.57	10.1	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_22	PF13401.6	gi|336251917|ref|YP_004585885.1|	-	0.00015	22.0	6.8	0.32	11.2	0.2	3.8	2	2	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336251917|ref|YP_004585885.1|	-	0.00031	20.2	0.2	0.57	9.5	0.0	3.0	3	0	0	3	3	3	2	KaiC
RsgA_GTPase	PF03193.16	gi|336251917|ref|YP_004585885.1|	-	0.00072	19.5	0.0	0.2	11.5	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA	PF00004.29	gi|336251917|ref|YP_004585885.1|	-	0.00094	19.6	0.0	0.79	10.1	0.0	3.0	3	1	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|336251917|ref|YP_004585885.1|	-	0.0012	18.1	0.0	0.12	11.5	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
AAA_24	PF13479.6	gi|336251917|ref|YP_004585885.1|	-	0.0012	18.6	0.0	2	8.1	0.0	2.8	3	0	0	3	3	3	2	AAA	domain
MobB	PF03205.14	gi|336251917|ref|YP_004585885.1|	-	0.0014	18.5	0.0	0.43	10.5	0.0	2.4	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.22	gi|336251917|ref|YP_004585885.1|	-	0.0023	18.3	0.0	1.7	9.0	0.0	2.5	2	0	0	2	2	2	1	RNA	helicase
AAA_33	PF13671.6	gi|336251917|ref|YP_004585885.1|	-	0.0032	17.6	0.0	2.7	8.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|336251917|ref|YP_004585885.1|	-	0.0034	16.9	0.0	1.6	8.1	0.0	2.4	2	0	0	2	2	2	1	PhoH-like	protein
AAA_5	PF07728.14	gi|336251917|ref|YP_004585885.1|	-	0.011	15.7	0.2	6.9	6.7	0.1	2.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.23	gi|336251917|ref|YP_004585885.1|	-	0.013	15.6	0.2	5.3	7.2	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_23	PF13476.6	gi|336251917|ref|YP_004585885.1|	-	0.014	15.9	0.0	0.87	10.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|336251917|ref|YP_004585885.1|	-	0.016	14.9	0.0	2.3	7.9	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|336251917|ref|YP_004585885.1|	-	0.017	15.2	0.0	0.99	9.4	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_15	PF13175.6	gi|336251917|ref|YP_004585885.1|	-	0.018	14.8	0.0	13	5.4	0.0	3.0	3	0	0	3	3	3	0	AAA	ATPase	domain
DUF87	PF01935.17	gi|336251917|ref|YP_004585885.1|	-	0.019	15.1	0.0	0.11	12.5	0.0	2.1	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_7	PF12775.7	gi|336251917|ref|YP_004585885.1|	-	0.043	13.3	0.0	7.6	6.0	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
MeaB	PF03308.16	gi|336251917|ref|YP_004585885.1|	-	0.044	12.8	0.0	0.56	9.1	0.0	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|336251917|ref|YP_004585885.1|	-	0.065	13.0	0.0	2.5	7.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|336251917|ref|YP_004585885.1|	-	0.067	13.4	0.1	7.5	6.8	0.0	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_18	PF13238.6	gi|336251917|ref|YP_004585885.1|	-	0.08	13.5	0.0	2.6	8.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|336251917|ref|YP_004585885.1|	-	0.095	12.4	1.8	9	6.0	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Pox_A32	PF04665.12	gi|336251917|ref|YP_004585885.1|	-	0.12	11.8	0.0	3.6	7.0	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
TniB	PF05621.11	gi|336251917|ref|YP_004585885.1|	-	0.12	11.7	0.1	22	4.4	0.1	3.1	3	0	0	3	3	3	0	Bacterial	TniB	protein
Zeta_toxin	PF06414.12	gi|336251917|ref|YP_004585885.1|	-	0.2	10.9	0.1	12	5.1	0.1	2.4	2	0	0	2	2	2	0	Zeta	toxin
TssN	PF17555.2	gi|336251918|ref|YP_004585886.1|	-	0.034	13.5	0.7	0.037	13.4	0.7	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
DUF5362	PF17319.2	gi|336251918|ref|YP_004585886.1|	-	0.036	13.9	0.1	0.049	13.5	0.1	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5362)
Tetraspanin	PF00335.20	gi|336251918|ref|YP_004585886.1|	-	0.088	12.5	0.4	0.099	12.3	0.4	1.0	1	0	0	1	1	1	0	Tetraspanin	family
BPD_transp_1	PF00528.22	gi|336251919|ref|YP_004585887.1|	-	2.5e-21	76.3	14.3	2.5e-21	76.3	14.3	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Transmemb_17	PF09799.9	gi|336251919|ref|YP_004585887.1|	-	0.049	14.2	0.9	0.049	14.2	0.9	2.6	3	1	1	4	4	4	0	Predicted	membrane	protein
BPD_transp_1	PF00528.22	gi|336251920|ref|YP_004585888.1|	-	4.8e-34	117.7	10.8	8.8e-34	116.9	10.8	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|336251921|ref|YP_004585889.1|	-	7.9e-31	107.4	0.2	1.1e-30	106.9	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251921|ref|YP_004585889.1|	-	0.46	10.4	5.0	0.95	9.4	5.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyco_hyd_65N_2	PF14498.6	gi|336251922|ref|YP_004585890.1|	-	4.4e-66	223.1	0.0	7.1e-66	222.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	65,	N-terminal	domain
3-alpha	PF03475.14	gi|336251922|ref|YP_004585890.1|	-	0.14	12.1	1.7	0.6	10.0	0.0	2.7	2	0	0	2	2	2	0	3-alpha	domain
Glyco_hydro_42	PF02449.15	gi|336251923|ref|YP_004585891.1|	-	1.2e-148	495.5	3.7	3.8e-148	493.8	2.9	1.9	2	0	0	2	2	2	1	Beta-galactosidase
Glyco_hydro_42M	PF08532.10	gi|336251923|ref|YP_004585891.1|	-	5.1e-65	218.9	0.1	7.6e-65	218.3	0.1	1.3	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
Glyco_hydro_14	PF01373.17	gi|336251923|ref|YP_004585891.1|	-	1.7e-06	27.3	0.1	6.4e-05	22.1	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	14
Cellulase	PF00150.18	gi|336251923|ref|YP_004585891.1|	-	0.0004	19.9	0.0	0.0015	18.0	0.0	1.8	2	0	0	2	2	2	1	Cellulase	(glycosyl	hydrolase	family	5)
Glyco_hydro_42C	PF08533.10	gi|336251923|ref|YP_004585891.1|	-	0.00083	19.0	0.0	0.0022	17.7	0.0	1.7	1	0	0	1	1	1	1	Beta-galactosidase	C-terminal	domain
Glyco_hydro_35	PF01301.19	gi|336251923|ref|YP_004585891.1|	-	0.0026	17.4	0.0	0.0052	16.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	35
DUF4350	PF14258.6	gi|336251923|ref|YP_004585891.1|	-	0.039	14.4	0.3	0.28	11.7	0.1	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
SfsA	PF03749.13	gi|336251925|ref|YP_004585893.1|	-	1.1e-41	142.0	0.0	1.3e-41	141.7	0.0	1.1	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|336251925|ref|YP_004585893.1|	-	3.6e-17	62.3	0.0	7.3e-17	61.3	0.0	1.5	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
PMSR	PF01625.21	gi|336251926|ref|YP_004585894.1|	-	1.1e-30	106.9	0.1	1.4e-30	106.5	0.1	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Asparaginase	PF00710.20	gi|336251927|ref|YP_004585895.1|	-	2e-54	184.0	0.1	4e-54	183.1	0.0	1.5	2	0	0	2	2	2	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|336251927|ref|YP_004585895.1|	-	1.4e-23	83.3	0.0	3.5e-22	78.8	0.0	2.2	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
Peripla_BP_4	PF13407.6	gi|336251927|ref|YP_004585895.1|	-	8.8e-07	28.7	0.7	0.024	14.2	0.1	2.2	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
Zn-ribbon_8	PF09723.10	gi|336251929|ref|YP_004585897.1|	-	0.039	14.1	0.4	0.13	12.4	0.3	1.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf_C2H2_10	PF18414.1	gi|336251929|ref|YP_004585897.1|	-	0.11	12.0	1.6	0.2	11.2	1.6	1.5	1	1	0	1	1	1	0	C2H2	type	zinc-finger
HypA	PF01155.19	gi|336251930|ref|YP_004585898.1|	-	6.3e-05	23.0	0.3	6.5e-05	22.9	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|336251930|ref|YP_004585898.1|	-	0.00017	22.3	0.2	0.00018	22.2	0.2	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|336251930|ref|YP_004585898.1|	-	0.00032	20.7	0.2	0.00035	20.5	0.2	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336251930|ref|YP_004585898.1|	-	0.00047	19.8	1.9	0.00064	19.3	1.9	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
Ogr_Delta	PF04606.12	gi|336251930|ref|YP_004585898.1|	-	0.00093	19.1	0.4	0.43	10.6	0.1	2.1	2	0	0	2	2	2	2	Ogr/Delta-like	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|336251930|ref|YP_004585898.1|	-	0.0014	18.6	0.2	0.89	9.6	0.0	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336251930|ref|YP_004585898.1|	-	0.0049	16.9	6.2	0.013	15.6	6.2	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
NRDD	PF13597.6	gi|336251930|ref|YP_004585898.1|	-	0.0051	15.7	0.1	0.0051	15.7	0.1	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
UPF0547	PF10571.9	gi|336251930|ref|YP_004585898.1|	-	0.0056	16.7	1.9	0.0099	15.9	1.9	1.5	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|336251930|ref|YP_004585898.1|	-	0.0058	16.0	1.4	0.0088	15.4	1.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF1272	PF06906.11	gi|336251930|ref|YP_004585898.1|	-	0.0086	16.1	0.7	0.01	15.9	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
Zn_ribbon_SprT	PF17283.2	gi|336251930|ref|YP_004585898.1|	-	0.012	15.5	0.9	1.8	8.5	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|336251930|ref|YP_004585898.1|	-	0.014	15.4	0.4	0.016	15.2	0.4	1.1	1	0	0	1	1	1	0	zinc-ribbons
RecR	PF02132.15	gi|336251930|ref|YP_004585898.1|	-	0.014	15.0	0.5	0.018	14.6	0.5	1.3	1	0	0	1	1	1	0	RecR	protein
zf_UBZ	PF18439.1	gi|336251930|ref|YP_004585898.1|	-	0.021	14.4	3.6	0.82	9.3	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Lar_restr_allev	PF14354.6	gi|336251930|ref|YP_004585898.1|	-	0.031	14.6	2.1	1.1	9.7	0.1	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
YhfH	PF14149.6	gi|336251930|ref|YP_004585898.1|	-	0.055	13.5	2.7	3.6	7.6	0.1	2.1	1	1	1	2	2	2	0	YhfH-like	protein
zinc_ribbon_9	PF14369.6	gi|336251930|ref|YP_004585898.1|	-	0.062	13.6	4.3	0.11	12.7	4.3	1.5	1	1	0	1	1	1	0	zinc-ribbon
NOB1_Zn_bind	PF08772.11	gi|336251930|ref|YP_004585898.1|	-	0.064	13.4	0.3	0.073	13.2	0.3	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
OrfB_Zn_ribbon	PF07282.11	gi|336251930|ref|YP_004585898.1|	-	0.066	13.2	3.5	0.34	10.9	1.1	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-IS66	PF13005.7	gi|336251930|ref|YP_004585898.1|	-	0.078	13.4	3.4	2.6	8.5	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_ligase_ZBD	PF03119.16	gi|336251930|ref|YP_004585898.1|	-	0.088	12.9	0.3	0.088	12.9	0.3	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF35_N	PF12172.8	gi|336251930|ref|YP_004585898.1|	-	0.099	12.5	2.3	0.19	11.6	2.3	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin_2	PF18073.1	gi|336251930|ref|YP_004585898.1|	-	0.17	11.6	4.9	2.5	7.9	5.1	2.0	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-Mss51	PF13824.6	gi|336251930|ref|YP_004585898.1|	-	0.36	11.0	3.7	0.87	9.7	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
RNA_POL_M_15KD	PF02150.16	gi|336251930|ref|YP_004585898.1|	-	0.48	10.3	5.2	2	8.4	0.7	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-C2H2_3	PF13878.6	gi|336251930|ref|YP_004585898.1|	-	0.75	9.7	5.0	1.7	8.6	0.3	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Flavodoxin_5	PF12724.7	gi|336251931|ref|YP_004585899.1|	-	4.2e-36	124.4	0.0	5.3e-36	124.0	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|336251931|ref|YP_004585899.1|	-	4.2e-05	23.8	0.1	9.7e-05	22.6	0.1	1.7	1	1	1	2	2	2	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|336251931|ref|YP_004585899.1|	-	0.0011	18.7	0.0	0.0036	17.0	0.0	1.8	1	1	0	2	2	2	1	Flavodoxin	domain
B12-binding	PF02310.19	gi|336251931|ref|YP_004585899.1|	-	0.057	13.5	0.0	0.15	12.1	0.0	1.8	1	0	0	1	1	1	0	B12	binding	domain
DUF3834	PF12916.7	gi|336251931|ref|YP_004585899.1|	-	0.078	12.2	0.0	0.11	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3834)
TrmB	PF01978.19	gi|336251932|ref|YP_004585900.1|	-	1.4e-12	47.3	0.0	2.2e-12	46.7	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336251932|ref|YP_004585900.1|	-	3.9e-07	29.8	0.0	7.4e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251932|ref|YP_004585900.1|	-	2.9e-06	27.1	0.0	1.3e-05	25.0	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|336251932|ref|YP_004585900.1|	-	4.7e-05	23.2	0.0	0.0002	21.2	0.0	1.9	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|336251932|ref|YP_004585900.1|	-	9.9e-05	22.2	0.1	0.00021	21.1	0.0	1.5	2	0	0	2	2	1	1	MarR	family
HTH_24	PF13412.6	gi|336251932|ref|YP_004585900.1|	-	0.00012	21.6	0.0	0.00019	20.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.16	gi|336251932|ref|YP_004585900.1|	-	0.00022	21.5	0.0	0.00028	21.2	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
DUF4777	PF16007.5	gi|336251932|ref|YP_004585900.1|	-	0.00091	19.4	0.1	0.0059	16.8	0.1	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4777)
HTH_20	PF12840.7	gi|336251932|ref|YP_004585900.1|	-	0.00092	19.2	0.0	0.0018	18.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251932|ref|YP_004585900.1|	-	0.0055	16.9	0.0	0.051	13.8	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.6	gi|336251932|ref|YP_004585900.1|	-	0.016	14.9	0.0	0.082	12.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|336251932|ref|YP_004585900.1|	-	0.02	14.9	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
HTH_5	PF01022.20	gi|336251932|ref|YP_004585900.1|	-	0.023	14.6	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|336251932|ref|YP_004585900.1|	-	0.025	14.4	0.0	0.067	13.0	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|336251932|ref|YP_004585900.1|	-	0.026	14.5	0.0	0.05	13.6	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|336251932|ref|YP_004585900.1|	-	0.027	14.1	0.0	0.12	12.0	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|336251932|ref|YP_004585900.1|	-	0.039	14.4	0.0	0.14	12.7	0.0	1.9	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_12	PF08461.10	gi|336251932|ref|YP_004585900.1|	-	0.051	13.5	0.1	0.21	11.6	0.0	2.0	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
DUF4364	PF14277.6	gi|336251932|ref|YP_004585900.1|	-	0.058	13.1	0.0	0.075	12.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Dimerisation	PF08100.11	gi|336251932|ref|YP_004585900.1|	-	0.078	13.0	0.0	0.28	11.2	0.0	1.8	2	0	0	2	2	2	0	Dimerisation	domain
RepB	PF07506.11	gi|336251932|ref|YP_004585900.1|	-	0.096	12.8	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
Sulf_transp	PF04143.14	gi|336251933|ref|YP_004585901.1|	-	2.7e-06	27.2	17.8	7.7e-06	25.7	7.3	2.1	1	1	1	2	2	2	2	Sulphur	transport
Sulf_transp	PF04143.14	gi|336251934|ref|YP_004585902.1|	-	8.2e-14	51.9	14.3	1.1e-13	51.5	14.3	1.0	1	0	0	1	1	1	1	Sulphur	transport
Lactamase_B	PF00753.27	gi|336251935|ref|YP_004585903.1|	-	1.1e-19	71.3	8.2	1.8e-19	70.6	8.2	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|336251935|ref|YP_004585903.1|	-	4.2e-10	40.1	0.0	7.9e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|336251935|ref|YP_004585903.1|	-	0.001	18.6	1.6	0.0025	17.4	1.6	1.6	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336251935|ref|YP_004585903.1|	-	0.0061	16.5	0.1	0.012	15.5	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
PH_8	PF15409.6	gi|336251935|ref|YP_004585903.1|	-	0.098	13.0	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	Pleckstrin	homology	domain
TusA	PF01206.17	gi|336251936|ref|YP_004585904.1|	-	2.8e-20	71.9	0.0	3.2e-20	71.7	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.6	gi|336251937|ref|YP_004585905.1|	-	8.7e-50	168.6	0.0	1.1e-49	168.3	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|336251937|ref|YP_004585905.1|	-	7.8e-08	32.7	0.0	4.6e-07	30.2	0.0	2.0	1	1	0	1	1	1	1	DsrE/DsrF-like	family
Sugarporin_N	PF11471.8	gi|336251937|ref|YP_004585905.1|	-	0.002	18.0	3.7	0.0046	16.9	2.3	2.2	2	0	0	2	2	2	1	Maltoporin	periplasmic	N-terminal	extension
ABC_tran_CTD	PF16326.5	gi|336251937|ref|YP_004585905.1|	-	0.064	13.5	1.6	0.099	12.9	0.6	1.8	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
HalX	PF08663.10	gi|336251937|ref|YP_004585905.1|	-	0.19	12.1	2.9	0.44	10.9	2.9	1.6	1	0	0	1	1	1	0	HalX	domain
DUF2270	PF10028.9	gi|336251938|ref|YP_004585906.1|	-	2.5e-74	248.9	5.4	2.9e-74	248.6	5.4	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
Abhydrolase_6	PF12697.7	gi|336251939|ref|YP_004585907.1|	-	3.4e-23	83.4	1.1	3.9e-23	83.2	1.1	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336251939|ref|YP_004585907.1|	-	9.5e-22	77.9	0.0	1.8e-15	57.3	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336251939|ref|YP_004585907.1|	-	1.4e-12	47.4	0.0	1.2e-08	34.6	0.1	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Thioesterase	PF00975.20	gi|336251939|ref|YP_004585907.1|	-	0.00092	19.4	0.0	0.0018	18.4	0.0	1.4	2	0	0	2	2	2	1	Thioesterase	domain
PGAP1	PF07819.13	gi|336251939|ref|YP_004585907.1|	-	0.055	13.2	0.0	1.3	8.7	0.0	2.1	1	1	1	2	2	2	0	PGAP1-like	protein
HATPase_c	PF02518.26	gi|336251940|ref|YP_004585908.1|	-	1.9e-28	99.2	0.1	5.3e-28	97.8	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|336251940|ref|YP_004585908.1|	-	6.9e-26	90.7	5.7	2.9e-12	46.8	0.0	4.0	3	1	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|336251940|ref|YP_004585908.1|	-	2.3e-22	79.1	3.3	1.5e-17	63.6	0.5	3.6	4	0	0	4	4	3	2	PAS	fold
PAS_9	PF13426.7	gi|336251940|ref|YP_004585908.1|	-	6.5e-21	74.5	0.1	4.3e-09	36.6	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|336251940|ref|YP_004585908.1|	-	5.3e-15	55.4	0.7	1e-06	28.7	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|336251940|ref|YP_004585908.1|	-	8.9e-14	51.1	0.3	2.1e-09	37.2	0.1	3.8	3	0	0	3	3	3	2	PAS	domain
HisKA	PF00512.25	gi|336251940|ref|YP_004585908.1|	-	2.7e-12	46.5	0.4	1.9e-11	43.8	0.1	2.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|336251940|ref|YP_004585908.1|	-	3.7e-12	47.0	0.1	1e-11	45.6	0.1	1.8	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|336251940|ref|YP_004585908.1|	-	1.9e-11	44.4	0.6	4.5e-11	43.2	0.6	1.7	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336251940|ref|YP_004585908.1|	-	8.4e-10	39.1	0.1	1.7e-09	38.1	0.1	1.5	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|336251940|ref|YP_004585908.1|	-	9.3e-05	22.3	0.0	0.0005	19.9	0.0	2.2	3	0	0	3	3	3	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336251940|ref|YP_004585908.1|	-	0.0012	18.8	0.0	0.0037	17.2	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336251940|ref|YP_004585908.1|	-	0.026	14.3	0.0	0.059	13.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3653	PF12375.8	gi|336251940|ref|YP_004585908.1|	-	0.099	12.8	0.3	1.1	9.4	0.0	2.7	3	0	0	3	3	3	0	Phage	protein
Beta_helix	PF13229.6	gi|336251941|ref|YP_004585909.1|	-	0.15	11.9	6.8	0.2	11.5	5.2	1.9	1	1	1	2	2	2	0	Right	handed	beta	helix	region
Glyco_hydro_4C	PF11975.8	gi|336251942|ref|YP_004585910.1|	-	9.3e-62	208.8	0.0	1.3e-61	208.4	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Glyco_hydro_4	PF02056.16	gi|336251942|ref|YP_004585910.1|	-	3.2e-57	193.0	0.0	4.4e-57	192.6	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
ADH_N	PF08240.12	gi|336251943|ref|YP_004585911.1|	-	2.3e-30	104.7	0.4	5.6e-30	103.4	0.5	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336251943|ref|YP_004585911.1|	-	9.7e-22	77.3	0.0	2e-21	76.3	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|336251943|ref|YP_004585911.1|	-	1.8e-12	47.2	0.0	3.1e-12	46.4	0.0	1.4	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|336251943|ref|YP_004585911.1|	-	1.8e-07	32.2	0.0	4.4e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
adh_short_C2	PF13561.6	gi|336251943|ref|YP_004585911.1|	-	0.14	11.7	0.1	0.36	10.3	0.0	1.7	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
ELFV_dehydrog	PF00208.21	gi|336251943|ref|YP_004585911.1|	-	0.18	11.5	0.1	2.3	7.9	0.1	2.1	1	1	1	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Alpha-L-AF_C	PF06964.12	gi|336251944|ref|YP_004585912.1|	-	1.2e-27	97.1	0.2	1.8e-27	96.5	0.2	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
SCP_3	PF17844.1	gi|336251944|ref|YP_004585912.1|	-	0.14	11.9	0.0	1.9	8.3	0.0	2.4	2	0	0	2	2	2	0	Bacterial	SCP	ortholog
SBP_bac_5	PF00496.22	gi|336251945|ref|YP_004585913.1|	-	1.1e-33	116.8	1.1	1.6e-33	116.2	1.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|336251946|ref|YP_004585914.1|	-	3.3e-37	128.0	11.4	3.3e-37	128.0	11.4	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336251947|ref|YP_004585915.1|	-	1.2e-22	80.5	13.3	1.2e-22	80.5	13.3	2.0	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336251948|ref|YP_004585916.1|	-	7.9e-23	81.5	0.0	1.3e-22	80.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251948|ref|YP_004585916.1|	-	2.8e-17	63.0	0.2	5.7e-17	62.0	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251948|ref|YP_004585916.1|	-	1.1e-10	41.8	0.6	7e-09	35.9	0.8	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251948|ref|YP_004585916.1|	-	7.5e-05	22.3	0.8	0.00098	18.6	0.8	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336251948|ref|YP_004585916.1|	-	0.0022	18.3	0.8	0.057	13.7	0.8	2.1	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|336251948|ref|YP_004585916.1|	-	0.0038	16.1	0.1	0.02	13.7	0.1	2.0	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_25	PF13481.6	gi|336251948|ref|YP_004585916.1|	-	0.0053	16.4	0.0	0.066	12.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
DUF87	PF01935.17	gi|336251948|ref|YP_004585916.1|	-	0.015	15.4	0.0	0.037	14.1	0.0	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_15	PF13175.6	gi|336251948|ref|YP_004585916.1|	-	0.019	14.7	0.2	0.91	9.2	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336251948|ref|YP_004585916.1|	-	0.037	13.8	0.1	0.075	12.8	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MeaB	PF03308.16	gi|336251948|ref|YP_004585916.1|	-	0.048	12.6	0.0	0.088	11.8	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|336251948|ref|YP_004585916.1|	-	0.052	13.9	0.1	0.085	13.2	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|336251948|ref|YP_004585916.1|	-	0.068	12.9	0.1	0.29	10.9	0.0	1.9	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|336251948|ref|YP_004585916.1|	-	0.13	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|336251948|ref|YP_004585916.1|	-	0.24	11.1	0.2	1.4	8.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|336251949|ref|YP_004585917.1|	-	1.2e-30	106.8	0.0	1.7e-30	106.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251949|ref|YP_004585917.1|	-	4.2e-17	62.4	0.1	7.8e-17	61.6	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251949|ref|YP_004585917.1|	-	0.0037	17.1	0.4	1.5	8.6	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336251949|ref|YP_004585917.1|	-	0.011	16.1	0.7	0.23	11.7	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|336251949|ref|YP_004585917.1|	-	0.015	14.6	0.0	0.026	13.9	0.0	1.3	1	0	0	1	1	1	0	KaiC
NB-ARC	PF00931.22	gi|336251949|ref|YP_004585917.1|	-	0.025	13.8	0.0	0.044	13.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_16	PF13191.6	gi|336251949|ref|YP_004585917.1|	-	0.03	14.7	0.0	0.054	13.9	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|336251949|ref|YP_004585917.1|	-	0.076	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_25	PF13481.6	gi|336251949|ref|YP_004585917.1|	-	0.077	12.6	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336251949|ref|YP_004585917.1|	-	0.11	12.3	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|336251949|ref|YP_004585917.1|	-	0.2	11.5	0.2	0.36	10.7	0.2	1.4	1	0	0	1	1	1	0	NACHT	domain
PhoH	PF02562.16	gi|336251949|ref|YP_004585917.1|	-	0.21	11.0	0.1	0.36	10.3	0.1	1.3	1	0	0	1	1	1	0	PhoH-like	protein
DUF4231	PF14015.6	gi|336251950|ref|YP_004585918.1|	-	0.058	13.9	0.6	0.065	13.7	0.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
Alpha-L-AF_C	PF06964.12	gi|336251951|ref|YP_004585919.1|	-	3.7e-09	36.9	0.0	8.5e-09	35.7	0.0	1.6	2	0	0	2	2	2	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Glyco_hydro_127	PF07944.12	gi|336251952|ref|YP_004585920.1|	-	2.1e-173	577.6	0.1	2.3e-173	577.4	0.1	1.0	1	0	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
Glyco_hydro_76	PF03663.14	gi|336251952|ref|YP_004585920.1|	-	0.12	11.9	1.8	2	7.9	0.1	2.9	2	1	1	3	3	3	0	Glycosyl	hydrolase	family	76
IclR	PF01614.18	gi|336251953|ref|YP_004585921.1|	-	8.2e-31	106.5	0.0	1.2e-30	106.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251953|ref|YP_004585921.1|	-	4.9e-08	32.6	0.0	1.4e-07	31.2	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336251953|ref|YP_004585921.1|	-	0.00025	21.5	0.2	0.00067	20.1	0.0	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|336251953|ref|YP_004585921.1|	-	0.00042	20.2	0.0	0.00081	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|336251953|ref|YP_004585921.1|	-	0.00065	19.5	0.0	0.0016	18.3	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|336251953|ref|YP_004585921.1|	-	0.001	18.9	0.0	0.002	18.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|336251953|ref|YP_004585921.1|	-	0.0029	17.5	0.0	0.0084	16.0	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_24	PF13412.6	gi|336251953|ref|YP_004585921.1|	-	0.0042	16.6	0.0	0.0074	15.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336251953|ref|YP_004585921.1|	-	0.0067	16.2	0.0	0.015	15.1	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_20	PF12840.7	gi|336251953|ref|YP_004585921.1|	-	0.0088	16.1	0.0	0.019	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336251953|ref|YP_004585921.1|	-	0.029	14.2	0.0	0.064	13.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_1_2	PF13022.6	gi|336251953|ref|YP_004585921.1|	-	0.058	13.5	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
MarR_2	PF12802.7	gi|336251953|ref|YP_004585921.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Cache_3-Cache_2	PF17201.4	gi|336251953|ref|YP_004585921.1|	-	0.16	11.3	0.0	0.24	10.6	0.0	1.3	1	0	0	1	1	1	0	Cache	3/Cache	2	fusion	domain
Glyco_hydro_2_N	PF02837.18	gi|336251954|ref|YP_004585922.1|	-	1.8e-23	83.3	1.2	7.5e-23	81.3	1.2	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|336251954|ref|YP_004585922.1|	-	2e-14	54.2	0.9	6.1e-14	52.6	0.0	2.5	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_C	PF02836.17	gi|336251954|ref|YP_004585922.1|	-	6.6e-11	41.9	0.0	1.1e-09	37.9	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
BetaGal_dom4_5	PF13364.6	gi|336251954|ref|YP_004585922.1|	-	2.2e-05	25.0	0.1	5.1e-05	23.8	0.1	1.6	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
HTH_IclR	PF09339.10	gi|336251955|ref|YP_004585923.1|	-	7.7e-14	51.2	0.0	2.5e-13	49.6	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
IclR	PF01614.18	gi|336251955|ref|YP_004585923.1|	-	1.7e-13	50.5	0.1	1.9e-05	24.5	0.0	2.9	3	0	0	3	3	3	2	Bacterial	transcriptional	regulator
BNR_2	PF13088.6	gi|336251955|ref|YP_004585923.1|	-	2.7e-12	46.6	0.1	4e-07	29.6	0.0	2.6	1	1	2	3	3	3	2	BNR	repeat-like	domain
BNR	PF02012.20	gi|336251955|ref|YP_004585923.1|	-	6.3e-06	25.4	13.2	0.21	11.7	0.9	4.8	3	0	0	3	3	3	3	BNR/Asp-box	repeat
HTH_5	PF01022.20	gi|336251955|ref|YP_004585923.1|	-	4.1e-05	23.3	0.1	9.3e-05	22.2	0.0	1.7	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|336251955|ref|YP_004585923.1|	-	6.7e-05	22.7	0.0	0.00016	21.5	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sortilin-Vps10	PF15902.5	gi|336251955|ref|YP_004585923.1|	-	7.4e-05	21.7	1.8	0.02	13.7	0.1	3.0	3	0	0	3	3	3	1	Sortilin,	neurotensin	receptor	3,
MarR	PF01047.22	gi|336251955|ref|YP_004585923.1|	-	0.00011	22.1	0.0	0.00023	21.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336251955|ref|YP_004585923.1|	-	0.00019	20.9	0.0	0.00035	20.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|336251955|ref|YP_004585923.1|	-	0.0081	16.1	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|336251955|ref|YP_004585923.1|	-	0.014	15.2	0.0	0.032	14.1	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Glyco_hydro_43	PF04616.14	gi|336251955|ref|YP_004585923.1|	-	0.022	14.1	0.1	0.12	11.7	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	hydrolases	family	43
HTH_7	PF02796.15	gi|336251955|ref|YP_004585923.1|	-	0.026	14.6	0.1	0.057	13.5	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Rrf2	PF02082.20	gi|336251955|ref|YP_004585923.1|	-	0.036	14.4	0.0	0.068	13.5	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|336251955|ref|YP_004585923.1|	-	0.038	14.2	0.1	0.09	13.0	0.1	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PadR	PF03551.14	gi|336251955|ref|YP_004585923.1|	-	0.053	13.5	0.1	5.4	7.0	0.1	3.0	3	0	0	3	3	2	0	Transcriptional	regulator	PadR-like	family
B-block_TFIIIC	PF04182.12	gi|336251955|ref|YP_004585923.1|	-	0.084	13.0	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|336251955|ref|YP_004585923.1|	-	0.1	12.6	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|336251955|ref|YP_004585923.1|	-	0.14	12.3	0.0	0.29	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|336251955|ref|YP_004585923.1|	-	0.2	11.7	0.1	0.93	9.5	0.0	2.0	1	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|336251955|ref|YP_004585923.1|	-	0.24	11.5	0.0	0.44	10.6	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
PAS_4	PF08448.10	gi|336251957|ref|YP_004585925.1|	-	3.3e-71	236.5	21.8	1.4e-14	54.3	0.1	6.6	6	0	0	6	6	6	6	PAS	fold
PAS_9	PF13426.7	gi|336251957|ref|YP_004585925.1|	-	3.7e-63	210.3	1.2	1.4e-16	60.7	0.0	6.8	6	0	0	6	6	6	6	PAS	domain
PAS	PF00989.25	gi|336251957|ref|YP_004585925.1|	-	2.5e-53	178.9	3.4	1.1e-11	44.8	0.0	7.9	6	2	0	6	6	6	6	PAS	fold
HATPase_c	PF02518.26	gi|336251957|ref|YP_004585925.1|	-	9e-30	103.5	0.0	2.9e-29	101.9	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336251957|ref|YP_004585925.1|	-	1e-28	99.4	4.6	5.6e-07	29.8	0.0	7.7	7	0	0	7	7	7	5	PAS	fold
PAS_8	PF13188.7	gi|336251957|ref|YP_004585925.1|	-	1.5e-28	98.3	5.9	6.5e-06	26.0	0.0	7.0	6	0	0	6	6	6	6	PAS	domain
PAS_7	PF12860.7	gi|336251957|ref|YP_004585925.1|	-	3.1e-12	46.7	2.7	0.4	10.9	0.0	8.2	8	2	0	8	8	8	3	PAS	fold
HisKA	PF00512.25	gi|336251957|ref|YP_004585925.1|	-	1.7e-10	40.7	2.0	6e-10	39.0	0.1	3.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|336251957|ref|YP_004585925.1|	-	0.00025	20.9	0.0	0.00068	19.5	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
HTH_20	PF12840.7	gi|336251957|ref|YP_004585925.1|	-	0.00026	21.0	0.0	0.00079	19.4	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
PAS_10	PF13596.6	gi|336251957|ref|YP_004585925.1|	-	0.00058	20.4	0.0	0.54	10.9	0.0	3.6	3	1	0	3	3	3	1	PAS	domain
HATPase_c_2	PF13581.6	gi|336251957|ref|YP_004585925.1|	-	0.00085	19.3	0.1	0.0032	17.4	0.1	2.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336251957|ref|YP_004585925.1|	-	0.017	15.0	0.0	0.039	13.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SgrR_N	PF12793.7	gi|336251957|ref|YP_004585925.1|	-	0.047	13.9	0.0	0.13	12.5	0.0	1.7	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
TrmB	PF01978.19	gi|336251957|ref|YP_004585925.1|	-	0.063	13.2	0.0	0.2	11.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Nsp1_C	PF05064.13	gi|336251957|ref|YP_004585925.1|	-	0.47	10.3	2.6	7.3	6.4	0.1	3.2	3	0	0	3	3	3	0	Nsp1-like	C-terminal	region
DUF2070	PF09843.9	gi|336251960|ref|YP_004585928.1|	-	4e-107	358.8	0.5	4.6e-107	358.7	0.5	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Sulfatase	PF00884.23	gi|336251961|ref|YP_004585929.1|	-	4.3e-36	124.9	0.1	5.5e-36	124.5	0.1	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251961|ref|YP_004585929.1|	-	1.6e-11	44.4	0.6	2.7e-06	27.2	0.2	2.4	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF1501	PF07394.12	gi|336251961|ref|YP_004585929.1|	-	0.013	14.6	0.4	0.013	14.6	0.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1501)
HAT	PF02184.16	gi|336251961|ref|YP_004585929.1|	-	0.018	15.0	0.0	0.053	13.5	0.0	1.8	2	0	0	2	2	2	0	HAT	(Half-A-TPR)	repeat
Cwf_Cwc_15	PF04889.12	gi|336251961|ref|YP_004585929.1|	-	4.2	7.0	7.8	6	6.5	7.8	1.1	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
GtrA	PF04138.14	gi|336251962|ref|YP_004585930.1|	-	4.6e-22	78.5	7.1	5.3e-22	78.3	7.1	1.0	1	0	0	1	1	1	1	GtrA-like	protein
SNARE_assoc	PF09335.11	gi|336251963|ref|YP_004585931.1|	-	3.4e-13	50.1	2.1	3.4e-13	50.1	2.1	1.5	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
NTP_transf_2	PF01909.23	gi|336251965|ref|YP_004585933.1|	-	1.8e-09	37.7	0.3	3e-09	37.1	0.3	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|336251965|ref|YP_004585933.1|	-	5.7e-09	35.9	0.0	1.1e-08	35.1	0.0	1.5	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
HTH_11	PF08279.12	gi|336251965|ref|YP_004585933.1|	-	1.3e-08	34.6	0.1	3.4e-08	33.3	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.10	gi|336251965|ref|YP_004585933.1|	-	0.00011	21.9	0.0	0.00022	21.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251965|ref|YP_004585933.1|	-	0.00073	19.4	0.8	0.0023	17.8	0.1	2.1	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336251965|ref|YP_004585933.1|	-	0.00094	19.0	0.0	0.0033	17.3	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|336251965|ref|YP_004585933.1|	-	0.0039	16.8	0.1	0.0078	15.8	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|336251965|ref|YP_004585933.1|	-	0.0054	16.8	0.1	0.013	15.6	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336251965|ref|YP_004585933.1|	-	0.0058	16.6	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR	PF01047.22	gi|336251965|ref|YP_004585933.1|	-	0.032	14.1	0.0	0.076	13.0	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|336251965|ref|YP_004585933.1|	-	0.048	13.2	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336251965|ref|YP_004585933.1|	-	0.049	13.4	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF294	PF03445.13	gi|336251965|ref|YP_004585933.1|	-	0.062	13.1	0.0	0.099	12.4	0.0	1.4	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HTH_41	PF14502.6	gi|336251965|ref|YP_004585933.1|	-	0.13	12.0	0.0	0.51	10.1	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Adenyl_cycl_N	PF12633.7	gi|336251965|ref|YP_004585933.1|	-	0.18	11.7	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
HTH_10	PF04967.12	gi|336251966|ref|YP_004585934.1|	-	0.022	14.5	0.0	0.056	13.3	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Oxidored_molyb	PF00174.19	gi|336251967|ref|YP_004585935.1|	-	2.2e-23	82.7	0.0	3e-23	82.3	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
DUF2249	PF10006.9	gi|336251968|ref|YP_004585936.1|	-	8.5e-84	275.4	24.7	2.5e-27	94.5	0.8	4.1	4	0	0	4	4	4	4	Uncharacterized	conserved	protein	(DUF2249)
SBP_bac_5	PF00496.22	gi|336251970|ref|YP_004585938.1|	-	3.4e-54	184.3	0.0	4e-54	184.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
CRISPR_assoc	PF08798.11	gi|336251970|ref|YP_004585938.1|	-	0.16	12.0	0.0	0.27	11.3	0.0	1.3	1	0	0	1	1	1	0	CRISPR	associated	protein
AA_permease_2	PF13520.6	gi|336251971|ref|YP_004585939.1|	-	4e-31	108.3	40.1	5.4e-31	107.9	40.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|336251971|ref|YP_004585939.1|	-	0.025	13.4	19.8	0.11	11.4	8.4	2.6	2	1	0	2	2	2	0	Spore	germination	protein
Ion_trans_2	PF07885.16	gi|336251972|ref|YP_004585940.1|	-	1.1e-06	28.5	5.4	1.1e-06	28.5	5.4	1.8	2	0	0	2	2	2	1	Ion	channel
Form_Nir_trans	PF01226.17	gi|336251973|ref|YP_004585941.1|	-	5.5e-35	120.8	8.5	6.2e-35	120.6	8.5	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
Usp	PF00582.26	gi|336251974|ref|YP_004585942.1|	-	7.1e-32	110.8	2.4	8e-32	110.7	2.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
RHH_1	PF01402.21	gi|336251975|ref|YP_004585943.1|	-	7e-05	22.6	0.3	7e-05	22.6	0.3	1.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|336251975|ref|YP_004585943.1|	-	0.0075	16.4	0.1	0.0078	16.4	0.1	1.2	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
Secretin_N	PF03958.17	gi|336251975|ref|YP_004585943.1|	-	0.058	13.8	0.2	0.1	13.0	0.2	1.3	1	0	0	1	1	1	0	Bacterial	type	II/III	secretion	system	short	domain
zf-ribbon_3	PF13248.6	gi|336251976|ref|YP_004585944.1|	-	0.0071	15.7	0.1	0.011	15.1	0.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336251976|ref|YP_004585944.1|	-	0.021	14.5	0.2	0.038	13.7	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Usp	PF00582.26	gi|336251977|ref|YP_004585945.1|	-	1.6e-65	219.9	9.6	3e-33	115.3	1.0	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF21	PF01595.20	gi|336251978|ref|YP_004585946.1|	-	1e-23	84.0	0.0	1.6e-23	83.3	0.0	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|336251978|ref|YP_004585946.1|	-	5.7e-11	42.7	0.2	3.5e-09	37.0	0.1	2.4	2	0	0	2	2	2	1	CBS	domain
PadR	PF03551.14	gi|336251979|ref|YP_004585947.1|	-	2.1e-17	62.8	1.4	2.6e-17	62.5	1.4	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336251979|ref|YP_004585947.1|	-	0.0015	18.5	0.1	0.0021	18.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|336251979|ref|YP_004585947.1|	-	0.0042	16.9	0.0	0.0065	16.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_27	PF13463.6	gi|336251979|ref|YP_004585947.1|	-	0.0078	16.7	0.1	0.01	16.3	0.1	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|336251979|ref|YP_004585947.1|	-	0.015	15.2	0.1	0.92	9.4	0.0	2.6	3	0	0	3	3	3	0	MarR	family
DUF4364	PF14277.6	gi|336251979|ref|YP_004585947.1|	-	0.099	12.4	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
CMD	PF02627.20	gi|336251980|ref|YP_004585948.1|	-	4e-12	46.0	0.0	6.8e-12	45.3	0.0	1.4	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
Peptidase_M16_C	PF05193.21	gi|336251980|ref|YP_004585948.1|	-	0.11	12.6	0.0	1.8	8.5	0.0	2.0	2	0	0	2	2	2	0	Peptidase	M16	inactive	domain
Usp	PF00582.26	gi|336251981|ref|YP_004585949.1|	-	1.8e-33	116.0	0.4	2.1e-33	115.8	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.26	gi|336251982|ref|YP_004585950.1|	-	6.6e-56	188.7	10.2	6.7e-32	110.9	1.8	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
Usp	PF00582.26	gi|336251983|ref|YP_004585951.1|	-	4.6e-30	105.0	2.8	5.4e-30	104.8	2.8	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
GARS_N	PF02844.15	gi|336251983|ref|YP_004585951.1|	-	0.026	15.3	0.0	0.068	14.0	0.0	1.8	1	1	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
Toprim_3	PF13362.6	gi|336251983|ref|YP_004585951.1|	-	0.054	13.9	0.1	0.4	11.1	0.0	2.0	1	1	1	2	2	2	0	Toprim	domain
DUF2188	PF09954.9	gi|336251983|ref|YP_004585951.1|	-	0.058	13.5	0.8	7.1	6.9	0.1	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
IclR	PF01614.18	gi|336251984|ref|YP_004585952.1|	-	6.5e-32	110.1	0.0	1.6e-30	105.6	0.0	2.2	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251984|ref|YP_004585952.1|	-	4.2e-14	52.1	0.4	2.6e-13	49.5	0.1	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251984|ref|YP_004585952.1|	-	2.3e-08	33.5	0.0	4.2e-08	32.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336251984|ref|YP_004585952.1|	-	1.8e-07	30.9	0.0	7.7e-07	28.9	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|336251984|ref|YP_004585952.1|	-	2.1e-07	30.7	0.0	4.2e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336251984|ref|YP_004585952.1|	-	2.6e-05	24.1	0.0	0.00013	21.8	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|336251984|ref|YP_004585952.1|	-	7.3e-05	22.6	0.0	0.00016	21.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336251984|ref|YP_004585952.1|	-	9.1e-05	22.3	0.5	0.00025	20.9	0.1	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|336251984|ref|YP_004585952.1|	-	0.0001	22.2	0.1	0.00023	21.1	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|336251984|ref|YP_004585952.1|	-	0.00013	21.9	0.0	0.00036	20.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|336251984|ref|YP_004585952.1|	-	0.0017	18.5	0.1	0.0033	17.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF742	PF05331.11	gi|336251984|ref|YP_004585952.1|	-	0.0029	17.4	0.0	0.008	16.0	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF742)
GAF	PF01590.26	gi|336251984|ref|YP_004585952.1|	-	0.0032	18.1	0.0	0.0076	16.9	0.0	1.8	1	1	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|336251984|ref|YP_004585952.1|	-	0.0033	17.7	0.1	0.0094	16.2	0.1	1.8	1	1	0	1	1	1	1	GAF	domain
FaeA	PF04703.12	gi|336251984|ref|YP_004585952.1|	-	0.0047	17.3	0.1	0.011	16.1	0.1	1.6	1	0	0	1	1	1	1	FaeA-like	protein
HTH_DeoR	PF08220.12	gi|336251984|ref|YP_004585952.1|	-	0.0083	15.9	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GAF_3	PF13492.6	gi|336251984|ref|YP_004585952.1|	-	0.015	15.6	0.0	0.03	14.7	0.0	1.5	1	0	0	1	1	1	0	GAF	domain
HTH_27	PF13463.6	gi|336251984|ref|YP_004585952.1|	-	0.017	15.6	0.0	0.041	14.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|336251984|ref|YP_004585952.1|	-	0.018	14.9	0.0	0.055	13.3	0.0	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251984|ref|YP_004585952.1|	-	0.026	14.7	0.2	0.055	13.7	0.2	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|336251984|ref|YP_004585952.1|	-	0.19	11.3	0.6	0.44	10.1	0.1	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
IclR	PF01614.18	gi|336251985|ref|YP_004585953.1|	-	1.5e-26	92.7	0.0	4e-26	91.4	0.0	1.7	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251985|ref|YP_004585953.1|	-	4.6e-13	48.8	0.3	5.6e-12	45.3	0.1	2.5	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336251985|ref|YP_004585953.1|	-	2e-09	37.4	0.6	5.4e-09	36.0	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|336251985|ref|YP_004585953.1|	-	5.2e-08	32.7	0.0	9.2e-08	31.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336251985|ref|YP_004585953.1|	-	1.4e-07	31.0	0.0	2.5e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336251985|ref|YP_004585953.1|	-	3.4e-07	30.0	0.0	9.2e-07	28.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|336251985|ref|YP_004585953.1|	-	1.7e-05	24.6	0.0	4.2e-05	23.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336251985|ref|YP_004585953.1|	-	0.0002	21.2	0.1	0.00069	19.5	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|336251985|ref|YP_004585953.1|	-	0.00028	21.3	0.0	0.00058	20.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_40	PF14493.6	gi|336251985|ref|YP_004585953.1|	-	0.0022	18.4	0.0	0.0054	17.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|336251985|ref|YP_004585953.1|	-	0.0034	17.2	0.2	0.011	15.6	0.1	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_23	PF13384.6	gi|336251985|ref|YP_004585953.1|	-	0.0046	16.7	0.0	0.02	14.7	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|336251985|ref|YP_004585953.1|	-	0.014	14.9	0.0	0.12	12.0	0.0	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
LexA_DNA_bind	PF01726.16	gi|336251985|ref|YP_004585953.1|	-	0.025	14.4	0.0	0.93	9.3	0.0	2.4	2	0	0	2	2	2	0	LexA	DNA	binding	domain
TrmB	PF01978.19	gi|336251985|ref|YP_004585953.1|	-	0.03	14.2	0.0	0.1	12.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|336251985|ref|YP_004585953.1|	-	0.043	13.6	0.0	0.043	13.6	0.0	1.6	2	0	0	2	2	1	0	DeoR-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|336251985|ref|YP_004585953.1|	-	0.045	13.5	0.0	0.092	12.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336251985|ref|YP_004585953.1|	-	0.047	13.7	0.0	1.9	8.6	0.0	2.9	3	0	0	3	3	3	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|336251985|ref|YP_004585953.1|	-	0.093	12.7	0.1	1.9	8.6	0.0	2.2	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|336251985|ref|YP_004585953.1|	-	0.15	12.3	0.0	0.65	10.2	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|336251985|ref|YP_004585953.1|	-	0.16	12.2	0.0	0.5	10.6	0.0	1.8	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF1803	PF08820.10	gi|336251985|ref|YP_004585953.1|	-	0.2	11.7	0.0	0.4	10.7	0.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
Aldedh	PF00171.22	gi|336251986|ref|YP_004585954.1|	-	1.6e-145	485.1	0.1	2.1e-145	484.8	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OmdA	PF13376.6	gi|336251986|ref|YP_004585954.1|	-	0.0043	17.0	1.2	0.0091	16.0	1.2	1.4	1	0	0	1	1	1	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
LuxC	PF05893.14	gi|336251986|ref|YP_004585954.1|	-	0.015	14.4	0.0	0.025	13.6	0.0	1.3	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
MDMPI_N	PF11716.8	gi|336251986|ref|YP_004585954.1|	-	0.02	15.6	2.2	0.055	14.1	2.2	1.7	1	0	0	1	1	1	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
SPOUT_MTase_2	PF14419.6	gi|336251986|ref|YP_004585954.1|	-	0.066	12.6	0.0	0.27	10.6	0.0	1.9	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
HTH_10	PF04967.12	gi|336251987|ref|YP_004585955.1|	-	4.3e-18	64.9	0.0	7e-18	64.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|336251987|ref|YP_004585955.1|	-	7.8e-05	22.8	0.0	0.00016	21.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
HTH_24	PF13412.6	gi|336251987|ref|YP_004585955.1|	-	0.00019	20.9	0.1	0.00036	20.0	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|336251987|ref|YP_004585955.1|	-	0.0019	17.8	0.3	1.1	8.9	0.0	2.3	2	0	0	2	2	2	2	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|336251987|ref|YP_004585955.1|	-	0.0058	16.1	0.1	0.013	15.0	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|336251987|ref|YP_004585955.1|	-	0.0096	15.8	0.0	0.018	14.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336251987|ref|YP_004585955.1|	-	0.017	15.0	0.0	0.088	12.7	0.0	2.3	2	0	0	2	2	2	0	MarR	family
HTH_11	PF08279.12	gi|336251987|ref|YP_004585955.1|	-	0.023	14.6	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_50	PF18024.1	gi|336251987|ref|YP_004585955.1|	-	0.028	14.0	0.0	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|336251987|ref|YP_004585955.1|	-	0.043	13.5	0.2	0.086	12.5	0.2	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
K_channel_TID	PF07941.11	gi|336251987|ref|YP_004585955.1|	-	0.073	13.5	0.2	0.18	12.3	0.0	1.7	2	0	0	2	2	2	0	Potassium	channel	Kv1.4	tandem	inactivation	domain
HTH_AsnC-type	PF13404.6	gi|336251987|ref|YP_004585955.1|	-	0.093	12.6	0.1	0.37	10.7	0.0	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Pro_dh	PF01619.18	gi|336251988|ref|YP_004585956.1|	-	5.1e-26	91.9	0.1	1.1e-25	90.8	0.1	1.5	1	1	0	1	1	1	1	Proline	dehydrogenase
Peptidase_C27	PF05407.12	gi|336251988|ref|YP_004585956.1|	-	0.033	14.3	0.5	0.055	13.6	0.5	1.4	1	0	0	1	1	1	0	Rubella	virus	endopeptidase
SSF	PF00474.17	gi|336251990|ref|YP_004585958.1|	-	2.5e-65	220.9	28.4	4e-65	220.3	28.4	1.3	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DAGK_cat	PF00781.24	gi|336251994|ref|YP_004585962.1|	-	4.7e-23	81.2	0.2	9e-23	80.3	0.2	1.4	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
NAD_kinase	PF01513.21	gi|336251994|ref|YP_004585962.1|	-	0.021	14.0	0.2	0.033	13.4	0.2	1.2	1	0	0	1	1	1	0	ATP-NAD	kinase
Mrr_cat	PF04471.12	gi|336251995|ref|YP_004585963.1|	-	3.7e-29	101.1	0.1	5.4e-29	100.5	0.1	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|336251995|ref|YP_004585963.1|	-	3.3e-16	59.3	0.4	5.4e-16	58.6	0.4	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
Imm52	PF15579.6	gi|336251995|ref|YP_004585963.1|	-	0.074	12.9	0.0	0.34	10.8	0.0	2.0	2	0	0	2	2	2	0	Immunity	protein	52
DUF3269	PF11673.8	gi|336251995|ref|YP_004585963.1|	-	0.15	12.5	0.2	0.76	10.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3269)
AhpC-TSA	PF00578.21	gi|336251996|ref|YP_004585964.1|	-	9.5e-15	54.6	0.1	1.6e-14	53.9	0.1	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336251996|ref|YP_004585964.1|	-	7e-14	51.8	0.1	1.1e-13	51.1	0.1	1.3	1	1	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|336251996|ref|YP_004585964.1|	-	4.1e-05	23.8	0.0	0.00015	22.0	0.0	1.8	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|336251996|ref|YP_004585964.1|	-	4.8e-05	23.8	0.4	0.00014	22.2	0.4	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|336251996|ref|YP_004585964.1|	-	0.11	12.5	0.1	7.4	6.7	0.2	2.2	2	0	0	2	2	2	0	Thioredoxin	domain
Oxidored_q3	PF00499.20	gi|336251997|ref|YP_004585965.1|	-	0.027	14.2	3.2	0.79	9.4	5.1	2.2	2	1	0	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
PQQ_2	PF13360.6	gi|336251998|ref|YP_004585966.1|	-	9.4e-32	110.5	10.9	2.6e-19	69.8	0.6	3.4	1	1	1	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|336251998|ref|YP_004585966.1|	-	3e-22	78.4	33.3	6.4e-06	26.5	0.3	8.5	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.21	gi|336251998|ref|YP_004585966.1|	-	3.5e-18	64.6	8.1	0.0036	17.2	0.0	6.6	6	0	0	6	6	6	5	PQQ	enzyme	repeat
Trypan_PARP	PF05887.11	gi|336251999|ref|YP_004585967.1|	-	0.095	12.7	0.3	1.3	9.0	0.0	2.1	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
Polysacc_deac_1	PF01522.21	gi|336252000|ref|YP_004585968.1|	-	5.7e-16	58.5	0.0	9.2e-16	57.9	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|336252000|ref|YP_004585968.1|	-	0.0001	22.1	0.1	0.00023	20.9	0.1	1.6	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
OrfB_Zn_ribbon	PF07282.11	gi|336252001|ref|YP_004585969.1|	-	2.2e-23	82.0	2.0	4.2e-23	81.0	2.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|336252001|ref|YP_004585969.1|	-	1.7e-17	63.7	0.0	4.4e-17	62.4	0.0	1.7	1	0	0	1	1	1	1	Probable	transposase
C1_2	PF03107.16	gi|336252001|ref|YP_004585969.1|	-	0.0077	16.5	1.5	0.02	15.2	1.5	1.6	1	0	0	1	1	1	1	C1	domain
Ribosomal_L37ae	PF01780.19	gi|336252001|ref|YP_004585969.1|	-	0.093	12.8	1.3	0.19	11.8	0.6	1.8	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|336252001|ref|YP_004585969.1|	-	0.15	12.0	3.0	0.35	10.9	3.0	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
PadR	PF03551.14	gi|336252002|ref|YP_004585970.1|	-	7.8e-14	51.4	0.3	9.2e-14	51.2	0.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336252002|ref|YP_004585970.1|	-	0.0059	16.6	0.1	0.0075	16.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|336252002|ref|YP_004585970.1|	-	0.032	14.7	0.0	0.044	14.3	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4358	PF14270.6	gi|336252002|ref|YP_004585970.1|	-	0.046	14.0	0.1	0.081	13.2	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
DUF4364	PF14277.6	gi|336252002|ref|YP_004585970.1|	-	0.047	13.4	0.1	0.059	13.1	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
PEP_hydrolase	PF09370.10	gi|336252003|ref|YP_004585971.1|	-	1.6e-129	430.9	0.2	1.8e-129	430.7	0.2	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	hydrolase-like
NMO	PF03060.15	gi|336252003|ref|YP_004585971.1|	-	0.043	13.2	0.2	0.087	12.2	0.1	1.5	2	0	0	2	2	2	0	Nitronate	monooxygenase
AcylCoA_dehyd_C	PF12186.8	gi|336252003|ref|YP_004585971.1|	-	0.1	12.7	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Acyl-CoA	dehydrogenase	C	terminal
Cupin_2	PF07883.11	gi|336252004|ref|YP_004585972.1|	-	2.2e-20	72.2	1.5	3.6e-20	71.4	1.5	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|336252004|ref|YP_004585972.1|	-	5.4e-09	35.6	0.4	1.2e-08	34.5	0.4	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|336252004|ref|YP_004585972.1|	-	1.9e-08	34.3	0.1	3.1e-08	33.6	0.1	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|336252004|ref|YP_004585972.1|	-	3e-08	33.4	0.0	3.9e-08	33.0	0.0	1.1	1	0	0	1	1	1	1	Cupin
MannoseP_isomer	PF01050.18	gi|336252004|ref|YP_004585972.1|	-	4.3e-06	26.7	0.0	5.5e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_7	PF12973.7	gi|336252004|ref|YP_004585972.1|	-	0.00011	22.0	0.2	0.00017	21.4	0.2	1.3	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
CENP-C_C	PF11699.8	gi|336252004|ref|YP_004585972.1|	-	0.00037	20.7	0.0	0.00053	20.2	0.0	1.1	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_6	PF12852.7	gi|336252004|ref|YP_004585972.1|	-	0.0031	17.2	0.1	0.0037	17.0	0.1	1.2	1	0	0	1	1	1	1	Cupin
Pirin_C	PF05726.13	gi|336252004|ref|YP_004585972.1|	-	0.0066	16.8	0.0	0.009	16.3	0.0	1.2	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
DMSP_lyase	PF16867.5	gi|336252004|ref|YP_004585972.1|	-	0.018	14.7	0.0	0.024	14.3	0.0	1.1	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
ARD	PF03079.14	gi|336252004|ref|YP_004585972.1|	-	0.066	13.4	0.2	0.1	12.8	0.2	1.2	1	0	0	1	1	1	0	ARD/ARD'	family
Asp_Arg_Hydrox	PF05118.15	gi|336252004|ref|YP_004585972.1|	-	0.2	11.5	0.0	0.52	10.1	0.0	1.7	1	1	0	1	1	1	0	Aspartyl/Asparaginyl	beta-hydroxylase
UPF0261	PF06792.11	gi|336252005|ref|YP_004585973.1|	-	1.4e-169	564.3	1.5	1.6e-169	564.2	1.5	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0261)
DBI_PRT	PF02277.17	gi|336252005|ref|YP_004585973.1|	-	0.0066	15.7	1.0	0.011	15.0	1.0	1.3	1	0	0	1	1	1	1	Phosphoribosyltransferase
Clp_N	PF02861.20	gi|336252005|ref|YP_004585973.1|	-	0.016	15.3	0.1	5.6	7.2	0.0	2.7	2	0	0	2	2	2	0	Clp	amino	terminal	domain,	pathogenicity	island	component
PAS_4	PF08448.10	gi|336252006|ref|YP_004585974.1|	-	1.3e-28	99.5	2.7	3.3e-16	59.5	0.2	3.2	3	0	0	3	3	3	2	PAS	fold
HATPase_c	PF02518.26	gi|336252006|ref|YP_004585974.1|	-	1.6e-27	96.2	0.0	4.3e-27	94.8	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336252006|ref|YP_004585974.1|	-	8.1e-18	64.5	1.1	3e-12	46.6	0.1	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|336252006|ref|YP_004585974.1|	-	2.1e-14	53.6	0.3	5.9e-08	32.9	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HisKA	PF00512.25	gi|336252006|ref|YP_004585974.1|	-	5.9e-12	45.4	0.2	5.9e-12	45.4	0.2	3.1	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|336252006|ref|YP_004585974.1|	-	1.1e-10	41.4	0.2	1.7e-05	24.8	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
GAF_3	PF13492.6	gi|336252006|ref|YP_004585974.1|	-	4.2e-06	27.1	0.0	2.1e-05	24.9	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
GAF_2	PF13185.6	gi|336252006|ref|YP_004585974.1|	-	5.2e-06	26.8	0.4	0.00012	22.3	0.1	3.2	3	1	0	3	3	2	1	GAF	domain
PAS_8	PF13188.7	gi|336252006|ref|YP_004585974.1|	-	1.1e-05	25.3	0.1	0.00029	20.8	0.0	2.9	2	0	0	2	2	2	1	PAS	domain
HATPase_c_5	PF14501.6	gi|336252006|ref|YP_004585974.1|	-	7.2e-05	22.6	0.0	0.0002	21.2	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
MEKHLA	PF08670.11	gi|336252006|ref|YP_004585974.1|	-	0.011	15.7	0.0	0.026	14.4	0.0	1.6	1	0	0	1	1	1	0	MEKHLA	domain
GAF	PF01590.26	gi|336252006|ref|YP_004585974.1|	-	0.012	16.3	0.1	0.12	13.0	0.0	2.7	3	1	1	4	4	3	0	GAF	domain
HATPase_c_3	PF13589.6	gi|336252006|ref|YP_004585974.1|	-	0.019	14.8	0.0	0.047	13.5	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|336252006|ref|YP_004585974.1|	-	0.066	13.2	0.2	0.4	10.6	0.2	2.4	1	1	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
His_kinase	PF06580.13	gi|336252006|ref|YP_004585974.1|	-	0.12	12.7	2.1	0.52	10.7	0.3	2.6	3	0	0	3	3	2	0	Histidine	kinase
OmpH	PF03938.14	gi|336252006|ref|YP_004585974.1|	-	0.15	12.4	1.6	1.1	9.5	0.4	2.3	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
ERM	PF00769.19	gi|336252006|ref|YP_004585974.1|	-	2	8.2	9.8	1.1	9.0	4.3	2.4	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
LolA_like	PF17131.4	gi|336252007|ref|YP_004585975.1|	-	0.00038	20.2	0.1	0.0018	18.0	0.1	2.0	1	1	0	1	1	1	1	Outer	membrane	lipoprotein-sorting	protein
DUF2092	PF09865.9	gi|336252007|ref|YP_004585975.1|	-	0.075	12.4	0.1	1.7	8.0	0.0	2.9	4	0	0	4	4	4	0	Predicted	periplasmic	protein	(DUF2092)
LolA	PF03548.15	gi|336252007|ref|YP_004585975.1|	-	0.11	12.2	0.0	0.39	10.4	0.0	1.8	2	0	0	2	2	2	0	Outer	membrane	lipoprotein	carrier	protein	LolA
YDG	PF18657.1	gi|336252007|ref|YP_004585975.1|	-	0.5	10.6	2.6	0.81	9.9	0.4	2.4	2	0	0	2	2	2	0	YDG	domain
DUF502	PF04367.13	gi|336252008|ref|YP_004585976.1|	-	1.5e-15	57.0	1.0	1.9e-15	56.6	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
LBP_C	PF17386.2	gi|336252008|ref|YP_004585976.1|	-	0.084	12.8	0.1	0.15	12.0	0.1	1.3	1	0	0	1	1	1	0	Lacto-N-biose	phosphorylase	C-terminal	domain
Popeye	PF04831.13	gi|336252008|ref|YP_004585976.1|	-	0.23	11.6	0.3	0.37	10.9	0.3	1.3	1	0	0	1	1	1	0	Popeye	protein	conserved	region
GFO_IDH_MocA	PF01408.22	gi|336252009|ref|YP_004585977.1|	-	3.3e-23	82.8	0.1	5.3e-23	82.1	0.1	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336252009|ref|YP_004585977.1|	-	9.2e-08	32.1	0.0	1.5e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.24	gi|336252009|ref|YP_004585977.1|	-	0.00018	21.9	0.0	0.00034	21.0	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Phage_holin_6_1	PF09682.10	gi|336252010|ref|YP_004585978.1|	-	0.11	12.9	0.0	0.13	12.7	0.0	1.1	1	0	0	1	1	1	0	Bacteriophage	holin	of	superfamily	6	(Holin_LLH)
Phage_integrase	PF00589.22	gi|336252011|ref|YP_004585979.1|	-	7e-10	39.0	0.2	2.6e-09	37.1	0.2	1.9	1	1	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.6	gi|336252012|ref|YP_004585980.1|	-	0.084	12.3	2.4	0.2	11.1	2.4	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Pribosyltran	PF00156.27	gi|336252012|ref|YP_004585980.1|	-	0.095	12.2	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase	domain
DNA_processg_A	PF02481.15	gi|336252013|ref|YP_004585981.1|	-	1.7e-54	184.3	0.0	2.2e-54	183.9	0.0	1.1	1	0	0	1	1	1	1	DNA	recombination-mediator	protein	A
LDcluster4	PF18306.1	gi|336252013|ref|YP_004585981.1|	-	3.8e-09	36.3	0.1	7.5e-09	35.4	0.1	1.5	2	0	0	2	2	2	1	SLOG	cluster4	family
Glyco_hydro_14	PF01373.17	gi|336252013|ref|YP_004585981.1|	-	0.16	10.9	0.0	0.69	8.8	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	14
Arylsulfotrans	PF05935.11	gi|336252014|ref|YP_004585982.1|	-	4.7e-09	35.6	0.8	2.2e-07	30.2	0.1	2.5	2	1	0	2	2	2	2	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.6	gi|336252014|ref|YP_004585982.1|	-	4e-08	33.0	0.1	2.2e-05	24.0	0.0	3.2	2	1	1	3	3	3	1	Arylsulfotransferase	(ASST)
NHL	PF01436.21	gi|336252014|ref|YP_004585982.1|	-	0.025	14.6	1.7	2	8.6	0.1	3.2	3	0	0	3	3	3	0	NHL	repeat
2TM	PF13239.6	gi|336252015|ref|YP_004585983.1|	-	0.024	14.9	2.9	0.03	14.6	2.9	1.2	1	0	0	1	1	1	0	2TM	domain
Cpta_toxin	PF07254.12	gi|336252015|ref|YP_004585983.1|	-	0.21	11.6	1.1	0.22	11.5	1.1	1.0	1	0	0	1	1	1	0	Membrane-bound	toxin	component	of	toxin-antitoxin	system
DUF3188	PF11384.8	gi|336252015|ref|YP_004585983.1|	-	0.45	10.3	5.1	0.62	9.8	1.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Multi_Drug_Res	PF00893.19	gi|336252017|ref|YP_004585985.1|	-	7e-27	93.9	5.8	9.9e-27	93.5	5.8	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.20	gi|336252017|ref|YP_004585985.1|	-	0.14	12.4	13.5	0.97	9.6	13.0	1.9	1	1	0	1	1	1	0	EamA-like	transporter	family
PAC2	PF09754.9	gi|336252018|ref|YP_004585986.1|	-	2.1e-37	129.2	0.7	2.5e-37	129.0	0.7	1.0	1	0	0	1	1	1	1	PAC2	family
Seryl_tRNA_N	PF02403.22	gi|336252018|ref|YP_004585986.1|	-	0.0071	16.6	0.7	0.06	13.6	0.1	2.1	2	0	0	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
WXG100	PF06013.12	gi|336252018|ref|YP_004585986.1|	-	0.03	14.6	2.8	0.064	13.5	2.8	1.5	1	0	0	1	1	1	0	Proteins	of	100	residues	with	WXG
TMEM247	PF15444.6	gi|336252018|ref|YP_004585986.1|	-	0.045	13.8	0.1	0.059	13.4	0.1	1.3	1	0	0	1	1	1	0	Transmembrane	protein	247
NTP_transf_3	PF12804.7	gi|336252018|ref|YP_004585986.1|	-	0.05	14.0	1.4	0.11	12.9	1.2	1.5	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
FlxA	PF14282.6	gi|336252018|ref|YP_004585986.1|	-	0.17	11.9	11.2	0.33	11.0	11.2	1.4	1	0	0	1	1	1	0	FlxA-like	protein
SseC	PF04888.12	gi|336252018|ref|YP_004585986.1|	-	0.36	10.4	3.4	4.8	6.7	1.7	2.1	2	0	0	2	2	2	0	Secretion	system	effector	C	(SseC)	like	family
DUF4140	PF13600.6	gi|336252018|ref|YP_004585986.1|	-	1.7	9.2	6.3	5.2	7.6	2.5	2.5	2	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Peptidase_M24	PF00557.24	gi|336252019|ref|YP_004585987.1|	-	1.4e-37	129.4	0.1	2e-37	128.9	0.1	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|336252019|ref|YP_004585987.1|	-	7.1e-22	78.5	0.1	1.3e-21	77.6	0.1	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
HAD_2	PF13419.6	gi|336252020|ref|YP_004585988.1|	-	5.6e-14	52.6	0.0	6.6e-14	52.4	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252020|ref|YP_004585988.1|	-	3.6e-13	50.3	0.0	6.9e-12	46.1	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252020|ref|YP_004585988.1|	-	0.00021	21.3	0.0	0.00045	20.2	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|336252020|ref|YP_004585988.1|	-	0.0037	17.7	0.1	0.0043	17.5	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
zf-TFIIB	PF13453.6	gi|336252020|ref|YP_004585988.1|	-	0.24	10.8	0.6	23	4.4	0.0	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
MazE_antitoxin	PF04014.18	gi|336252021|ref|YP_004585989.1|	-	0.0018	18.2	0.3	0.0029	17.5	0.3	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|336252021|ref|YP_004585989.1|	-	0.0084	16.5	0.0	0.011	16.2	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
MoaF	PF10703.9	gi|336252021|ref|YP_004585989.1|	-	0.07	13.1	0.0	0.076	13.0	0.0	1.2	1	0	0	1	1	1	0	MoaF	N-terminal	domain
PIN	PF01850.21	gi|336252022|ref|YP_004585990.1|	-	6e-16	59.1	0.2	6.7e-16	58.9	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
FAD-oxidase_C	PF02913.19	gi|336252023|ref|YP_004585991.1|	-	1.4e-61	208.3	0.3	5.3e-61	206.4	0.1	1.9	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|336252023|ref|YP_004585991.1|	-	1.6e-40	138.1	1.4	2.9e-40	137.2	1.4	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|336252023|ref|YP_004585991.1|	-	2.8e-10	40.6	4.5	5.2e-10	39.7	4.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252023|ref|YP_004585991.1|	-	2.4e-08	34.3	5.2	5.1e-08	33.3	5.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|336252023|ref|YP_004585991.1|	-	4.6e-07	29.9	0.0	1.1e-05	25.5	0.0	2.5	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_9	PF13187.6	gi|336252023|ref|YP_004585991.1|	-	0.012	15.8	3.2	0.053	13.7	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252023|ref|YP_004585991.1|	-	0.024	14.8	7.5	0.1	12.7	2.0	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|336252023|ref|YP_004585991.1|	-	0.043	13.2	0.0	0.066	12.6	0.0	1.2	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_21	PF14697.6	gi|336252023|ref|YP_004585991.1|	-	0.069	13.3	3.1	0.22	11.7	0.5	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252023|ref|YP_004585991.1|	-	0.45	11.2	7.0	2.8	8.6	7.5	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336252023|ref|YP_004585991.1|	-	9.3	6.2	14.0	0.16	11.8	4.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336252024|ref|YP_004585992.1|	-	1.8e-54	183.8	0.0	3.1e-54	183.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|336252024|ref|YP_004585992.1|	-	1.1e-13	51.0	0.0	1.4e-13	50.6	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|336252024|ref|YP_004585992.1|	-	0.00053	20.5	0.0	0.0029	18.1	0.0	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|336252024|ref|YP_004585992.1|	-	0.022	14.3	0.0	0.041	13.5	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|336252024|ref|YP_004585992.1|	-	0.043	14.1	0.7	1.8	8.9	0.1	3.0	3	0	0	3	3	3	0	TrkA-N	domain
DUF4440	PF14534.6	gi|336252024|ref|YP_004585992.1|	-	0.11	12.9	0.0	1.4	9.4	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4440)
Shikimate_DH	PF01488.20	gi|336252024|ref|YP_004585992.1|	-	0.15	12.1	0.1	0.66	10.0	0.0	2.0	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
Ifi-6-16	PF06140.13	gi|336252024|ref|YP_004585992.1|	-	5.6	7.0	6.9	0.49	10.4	0.5	2.3	3	0	0	3	3	3	0	Interferon-induced	6-16	family
Peptidase_M20	PF01546.28	gi|336252025|ref|YP_004585993.1|	-	3.8e-23	82.3	3.5	5.8e-23	81.7	3.5	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336252025|ref|YP_004585993.1|	-	3.9e-11	42.8	0.7	3.9e-11	42.8	0.7	1.7	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Radical_SAM	PF04055.21	gi|336252025|ref|YP_004585993.1|	-	0.14	12.5	0.3	1.9	8.8	0.0	2.5	2	1	0	2	2	2	0	Radical	SAM	superfamily
PALP	PF00291.25	gi|336252026|ref|YP_004585994.1|	-	1.3e-74	251.3	6.1	1.8e-74	250.8	6.1	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Arylsulfotrans	PF05935.11	gi|336252028|ref|YP_004585996.1|	-	4.5e-11	42.3	1.3	4.5e-08	32.4	1.2	3.3	1	1	2	3	3	3	3	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.6	gi|336252028|ref|YP_004585996.1|	-	3.1e-09	36.6	0.3	2e-07	30.7	0.1	2.5	2	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
NHL	PF01436.21	gi|336252028|ref|YP_004585996.1|	-	0.0053	16.7	4.7	0.14	12.2	0.0	3.7	4	0	0	4	4	4	2	NHL	repeat
Glu_cyclase_2	PF05096.12	gi|336252028|ref|YP_004585996.1|	-	0.12	11.8	0.0	0.28	10.6	0.0	1.5	1	0	0	1	1	1	0	Glutamine	cyclotransferase
DUF4787	PF16029.5	gi|336252028|ref|YP_004585996.1|	-	0.16	12.1	0.7	0.46	10.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4787)
Aminotran_3	PF00202.21	gi|336252029|ref|YP_004585997.1|	-	5.1e-75	252.6	0.0	1.2e-74	251.4	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-III
BCCT	PF02028.17	gi|336252030|ref|YP_004585998.1|	-	1e-156	522.2	49.1	1.2e-156	522.0	49.1	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
DUF5510	PF17629.2	gi|336252030|ref|YP_004585998.1|	-	0.61	10.1	0.0	0.61	10.1	0.0	3.1	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5510)
Sdh5	PF03937.16	gi|336252031|ref|YP_004585999.1|	-	0.028	14.4	0.1	0.064	13.2	0.1	1.6	1	0	0	1	1	1	0	Flavinator	of	succinate	dehydrogenase
Peptidase_M20	PF01546.28	gi|336252032|ref|YP_004586000.1|	-	1.4e-25	90.2	4.3	2.4e-25	89.5	4.3	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336252032|ref|YP_004586000.1|	-	1.3e-10	41.1	0.3	3.4e-10	39.8	0.3	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Ribonuc_L-PSP	PF01042.21	gi|336252033|ref|YP_004586001.1|	-	3.3e-36	124.0	0.0	3.6e-36	123.8	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
GGDEF	PF00990.21	gi|336252033|ref|YP_004586001.1|	-	0.01	15.6	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	0	Diguanylate	cyclase,	GGDEF	domain
Aminotran_3	PF00202.21	gi|336252034|ref|YP_004586002.1|	-	1e-102	343.8	0.0	1.3e-102	343.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
AFOR_C	PF01314.18	gi|336252035|ref|YP_004586003.1|	-	6.9e-77	259.0	0.0	1.2e-76	258.2	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|336252035|ref|YP_004586003.1|	-	2.5e-60	203.7	0.1	5e-60	202.8	0.1	1.5	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
HTH_20	PF12840.7	gi|336252036|ref|YP_004586004.1|	-	7.1e-06	26.0	0.0	1.4e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Lar_restr_allev	PF14354.6	gi|336252036|ref|YP_004586004.1|	-	0.023	15.1	0.5	5.9	7.4	0.1	2.5	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
FYVE	PF01363.21	gi|336252036|ref|YP_004586004.1|	-	0.27	11.4	3.1	0.19	11.9	1.2	1.7	2	0	0	2	2	2	0	FYVE	zinc	finger
DZR	PF12773.7	gi|336252036|ref|YP_004586004.1|	-	0.57	10.2	5.9	1.2	9.2	1.5	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|336252036|ref|YP_004586004.1|	-	1.1	8.9	12.7	1.1	8.9	3.7	3.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|336252036|ref|YP_004586004.1|	-	1.2	9.0	5.6	3.5	7.5	0.0	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|336252036|ref|YP_004586004.1|	-	3.1	7.8	7.2	57	3.7	3.7	3.3	2	1	0	2	2	2	0	Nudix	N-terminal
Na_Ca_ex	PF01699.24	gi|336252037|ref|YP_004586005.1|	-	5.6e-46	156.2	33.0	1.3e-23	83.6	14.6	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Sod_Fe_N	PF00081.22	gi|336252038|ref|YP_004586006.1|	-	2.1e-31	108.2	0.6	3.4e-31	107.5	0.6	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|336252038|ref|YP_004586006.1|	-	4.1e-28	97.5	0.0	6.4e-28	96.9	0.0	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Pirin	PF02678.16	gi|336252039|ref|YP_004586007.1|	-	2.5e-21	75.7	0.0	4.5e-21	74.8	0.0	1.5	1	0	0	1	1	1	1	Pirin
Pirin_C	PF05726.13	gi|336252039|ref|YP_004586007.1|	-	3.9e-13	49.7	0.0	3.8e-12	46.5	0.0	2.1	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|336252039|ref|YP_004586007.1|	-	0.00017	21.2	1.0	0.039	13.6	0.1	2.5	2	0	0	2	2	2	2	Cupin	domain
Pyr_redox_2	PF07992.14	gi|336252040|ref|YP_004586008.1|	-	4.9e-20	72.0	4.5	4.7e-12	45.7	0.1	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252040|ref|YP_004586008.1|	-	5.7e-15	55.4	1.2	6e-09	35.6	0.0	2.9	1	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336252040|ref|YP_004586008.1|	-	9.7e-13	47.6	0.0	5.2e-06	25.4	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.24	gi|336252040|ref|YP_004586008.1|	-	8.7e-12	45.3	1.3	5.7e-05	22.9	0.0	2.5	1	1	2	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336252040|ref|YP_004586008.1|	-	7.9e-08	31.8	0.7	1e-05	24.9	0.1	2.3	1	1	1	2	2	2	2	FAD	binding	domain
GIDA	PF01134.22	gi|336252040|ref|YP_004586008.1|	-	2.7e-07	30.0	0.1	6.7e-06	25.4	0.0	2.2	1	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|336252040|ref|YP_004586008.1|	-	4.8e-07	29.9	0.0	0.0062	16.5	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|336252040|ref|YP_004586008.1|	-	6.1e-07	29.0	4.6	0.0022	17.3	0.1	2.1	1	1	1	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336252040|ref|YP_004586008.1|	-	3e-06	26.8	0.3	1.3e-05	24.8	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|336252040|ref|YP_004586008.1|	-	2.9e-05	23.4	0.0	6.3e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|336252040|ref|YP_004586008.1|	-	0.00025	21.2	0.0	0.00057	20.1	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.6	gi|336252040|ref|YP_004586008.1|	-	0.00069	18.8	0.1	0.8	8.8	0.0	2.1	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Pyr_redox	PF00070.27	gi|336252040|ref|YP_004586008.1|	-	0.00088	19.8	0.2	0.036	14.6	0.2	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336252040|ref|YP_004586008.1|	-	0.0015	17.7	0.1	0.0034	16.5	0.0	1.6	1	1	1	2	2	2	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|336252040|ref|YP_004586008.1|	-	0.0029	16.9	0.0	0.0044	16.4	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Amino_oxidase	PF01593.24	gi|336252040|ref|YP_004586008.1|	-	0.056	12.7	0.0	0.092	12.0	0.0	1.3	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Trp_halogenase	PF04820.14	gi|336252040|ref|YP_004586008.1|	-	0.088	11.6	1.1	1.9	7.2	0.1	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
3HCDH_N	PF02737.18	gi|336252040|ref|YP_004586008.1|	-	0.093	12.6	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TetR_N	PF00440.23	gi|336252042|ref|YP_004586010.1|	-	1.8e-10	40.5	0.0	3.3e-10	39.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.6	gi|336252042|ref|YP_004586010.1|	-	4.6e-10	39.7	1.0	9.3e-10	38.7	1.0	1.5	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_27	PF17935.1	gi|336252042|ref|YP_004586010.1|	-	1.7e-06	28.0	0.3	3.6e-06	27.0	0.3	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|336252042|ref|YP_004586010.1|	-	9.5e-05	22.4	0.1	0.00024	21.1	0.0	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|336252042|ref|YP_004586010.1|	-	0.0023	18.2	1.4	0.0038	17.5	0.3	1.9	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|336252042|ref|YP_004586010.1|	-	0.0076	16.3	0.1	0.016	15.3	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_9	PF14514.6	gi|336252042|ref|YP_004586010.1|	-	0.027	14.6	0.1	0.049	13.8	0.1	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|336252042|ref|YP_004586010.1|	-	0.04	14.1	0.4	0.081	13.1	0.4	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HEPN_DZIP3	PF18738.1	gi|336252042|ref|YP_004586010.1|	-	0.16	11.7	0.1	0.23	11.2	0.1	1.2	1	0	0	1	1	1	0	DZIP3/	hRUL138-like	HEPN
PIN_9	PF18477.1	gi|336252043|ref|YP_004586011.1|	-	0.044	14.1	0.0	0.057	13.7	0.0	1.3	1	0	0	1	1	1	0	PIN	like	domain
VPS13_mid_rpt	PF16910.5	gi|336252044|ref|YP_004586012.1|	-	0.11	12.0	0.1	0.14	11.6	0.1	1.1	1	0	0	1	1	1	0	Repeating	coiled	region	of	VPS13
SlyX	PF04102.12	gi|336252045|ref|YP_004586013.1|	-	0.017	15.7	0.8	0.06	14.0	0.6	1.8	2	0	0	2	2	2	0	SlyX
HAMP	PF00672.25	gi|336252045|ref|YP_004586013.1|	-	0.054	13.9	0.5	0.079	13.3	0.5	1.3	1	0	0	1	1	1	0	HAMP	domain
GTP_EFTU	PF00009.27	gi|336252046|ref|YP_004586014.1|	-	8.9e-57	191.8	0.1	1.1e-56	191.5	0.1	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|336252046|ref|YP_004586014.1|	-	4.6e-37	126.7	0.0	1.2e-36	125.4	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|336252046|ref|YP_004586014.1|	-	4.6e-15	55.8	3.1	1.4e-14	54.2	1.2	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|336252046|ref|YP_004586014.1|	-	8.3e-08	32.3	0.2	5.4e-07	29.7	0.2	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|336252046|ref|YP_004586014.1|	-	0.00043	20.2	2.3	0.05	13.5	0.2	2.5	1	1	1	2	2	2	2	RsgA	GTPase
Ras	PF00071.22	gi|336252046|ref|YP_004586014.1|	-	0.0016	18.0	1.1	0.0074	15.9	0.4	2.1	2	0	0	2	2	2	1	Ras	family
Dynamin_N	PF00350.23	gi|336252046|ref|YP_004586014.1|	-	0.0024	18.0	0.1	0.99	9.4	0.0	2.4	1	1	1	2	2	2	2	Dynamin	family
SRPRB	PF09439.10	gi|336252046|ref|YP_004586014.1|	-	0.0053	16.2	0.0	0.12	11.8	0.0	2.3	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
GTP_EFTU_D4	PF14578.6	gi|336252046|ref|YP_004586014.1|	-	0.011	15.6	0.6	0.042	13.7	0.6	2.0	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
FeoB_N	PF02421.18	gi|336252046|ref|YP_004586014.1|	-	0.011	15.2	0.2	0.21	11.1	0.4	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Septin	PF00735.18	gi|336252046|ref|YP_004586014.1|	-	0.014	14.6	0.1	0.035	13.4	0.1	1.5	1	1	0	1	1	1	0	Septin
Gtr1_RagA	PF04670.12	gi|336252046|ref|YP_004586014.1|	-	0.023	14.1	0.4	0.45	9.8	0.4	2.2	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
Roc	PF08477.13	gi|336252046|ref|YP_004586014.1|	-	0.15	12.3	0.0	22	5.3	0.0	2.5	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DUF2513	PF10711.9	gi|336252047|ref|YP_004586015.1|	-	8.3e-06	26.0	0.0	1.7e-05	25.1	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
PadR	PF03551.14	gi|336252047|ref|YP_004586015.1|	-	2.4e-05	24.2	0.0	4.3e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|336252047|ref|YP_004586015.1|	-	3.7e-05	23.8	0.0	6.8e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_20	PF12840.7	gi|336252047|ref|YP_004586015.1|	-	0.003	17.6	0.0	0.0056	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336252047|ref|YP_004586015.1|	-	0.0093	15.9	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
RuBisCO_small	PF00101.20	gi|336252047|ref|YP_004586015.1|	-	0.012	15.5	0.0	0.039	13.9	0.0	1.8	1	1	0	1	1	1	0	Ribulose	bisphosphate	carboxylase,	small	chain
HTH_34	PF13601.6	gi|336252047|ref|YP_004586015.1|	-	0.019	15.1	0.0	0.029	14.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|336252047|ref|YP_004586015.1|	-	0.021	14.4	0.1	0.058	13.0	0.0	1.9	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
DUF86	PF01934.17	gi|336252047|ref|YP_004586015.1|	-	0.022	14.6	0.1	0.12	12.3	0.0	1.9	1	1	0	2	2	2	0	Protein	of	unknown	function	DUF86
MarR_2	PF12802.7	gi|336252047|ref|YP_004586015.1|	-	0.026	14.4	0.0	0.062	13.2	0.0	1.7	1	1	0	1	1	1	0	MarR	family
Replic_Relax	PF13814.6	gi|336252047|ref|YP_004586015.1|	-	0.028	14.5	0.0	0.036	14.1	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
TrmB	PF01978.19	gi|336252047|ref|YP_004586015.1|	-	0.035	14.0	0.0	0.083	12.8	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|336252047|ref|YP_004586015.1|	-	0.049	14.1	0.0	0.1	13.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|336252047|ref|YP_004586015.1|	-	0.064	13.1	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|336252047|ref|YP_004586015.1|	-	0.064	13.2	0.0	0.18	11.8	0.0	1.8	2	1	0	2	2	1	0	Winged	helix-turn-helix
HxlR	PF01638.17	gi|336252047|ref|YP_004586015.1|	-	0.073	12.9	0.0	0.15	11.9	0.0	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_36	PF13730.6	gi|336252047|ref|YP_004586015.1|	-	0.16	12.0	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DctP	PF03480.13	gi|336252049|ref|YP_004586017.1|	-	4.6e-26	91.8	0.0	8.4e-26	91.0	0.0	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein,	family	7
SCAN	PF02023.17	gi|336252049|ref|YP_004586017.1|	-	0.18	11.6	0.7	0.35	10.7	0.2	1.7	2	0	0	2	2	2	0	SCAN	domain
DctQ	PF04290.12	gi|336252050|ref|YP_004586018.1|	-	1.9e-18	66.6	13.5	2e-18	66.6	12.8	1.3	1	1	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DctM	PF06808.12	gi|336252051|ref|YP_004586019.1|	-	2.1e-75	254.1	42.0	2.5e-75	253.9	42.0	1.0	1	0	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
Meth_synt_2	PF01717.18	gi|336252053|ref|YP_004586021.1|	-	2e-18	66.7	0.5	2.7e-10	40.1	0.2	2.2	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	Catalytic	domain
Cpn60_TCP1	PF00118.24	gi|336252053|ref|YP_004586021.1|	-	0.091	11.4	0.1	0.14	10.8	0.1	1.1	1	0	0	1	1	1	0	TCP-1/cpn60	chaperonin	family
M-inducer_phosp	PF06617.13	gi|336252053|ref|YP_004586021.1|	-	0.15	11.4	0.1	0.22	10.8	0.1	1.2	1	0	0	1	1	1	0	M-phase	inducer	phosphatase
Med11	PF10280.9	gi|336252053|ref|YP_004586021.1|	-	0.15	12.5	0.3	2.5	8.6	0.2	2.2	2	0	0	2	2	2	0	Mediator	complex	protein
MatE	PF01554.18	gi|336252054|ref|YP_004586022.1|	-	1.1e-46	158.4	20.3	8.4e-24	84.0	8.0	2.6	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|336252054|ref|YP_004586022.1|	-	1.6e-09	38.0	7.8	1.6e-09	38.0	7.8	3.8	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336252054|ref|YP_004586022.1|	-	2.1e-06	26.6	7.3	5.4e-06	25.3	7.3	1.6	1	0	0	1	1	1	1	Lipid	II	flippase	MurJ
HalOD1	PF18545.1	gi|336252055|ref|YP_004586023.1|	-	6.2e-20	71.3	1.3	6.9e-20	71.1	1.3	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Cdc6_C	PF09079.11	gi|336252056|ref|YP_004586024.1|	-	4.3e-18	65.1	0.2	1.3e-17	63.6	0.2	1.9	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336252056|ref|YP_004586024.1|	-	1.4e-14	54.5	0.1	3.9e-14	53.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336252056|ref|YP_004586024.1|	-	1e-10	42.2	2.5	2.2e-09	37.9	0.3	3.1	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|336252056|ref|YP_004586024.1|	-	4e-06	26.9	0.0	1e-05	25.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|336252056|ref|YP_004586024.1|	-	5.9e-06	26.1	0.2	1.1e-05	25.2	0.0	1.6	2	0	0	2	2	1	1	Sigma-54	interaction	domain
AAA	PF00004.29	gi|336252056|ref|YP_004586024.1|	-	1.1e-05	25.9	0.1	2.9e-05	24.5	0.1	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|336252056|ref|YP_004586024.1|	-	9.5e-05	21.9	0.0	0.00019	20.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|336252056|ref|YP_004586024.1|	-	0.0001	21.6	0.0	0.00017	20.9	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
NACHT	PF05729.12	gi|336252056|ref|YP_004586024.1|	-	0.00018	21.5	0.0	0.00034	20.6	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_7	PF12775.7	gi|336252056|ref|YP_004586024.1|	-	0.00024	20.7	0.0	0.00042	19.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|336252056|ref|YP_004586024.1|	-	0.0003	21.1	0.0	0.00061	20.1	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
Sigma54_activ_2	PF14532.6	gi|336252056|ref|YP_004586024.1|	-	0.00038	20.6	0.0	0.002	18.2	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|336252056|ref|YP_004586024.1|	-	0.00056	19.7	0.3	0.00096	18.9	0.3	1.3	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|336252056|ref|YP_004586024.1|	-	0.00077	18.7	0.0	0.0014	17.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|336252056|ref|YP_004586024.1|	-	0.0059	16.0	0.0	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
DEAD	PF00270.29	gi|336252056|ref|YP_004586024.1|	-	0.007	16.2	0.9	0.62	9.8	0.9	2.3	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_2	PF07724.14	gi|336252056|ref|YP_004586024.1|	-	0.0077	16.4	0.1	0.013	15.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
DUF2075	PF09848.9	gi|336252056|ref|YP_004586024.1|	-	0.014	14.7	0.0	0.018	14.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
PhoH	PF02562.16	gi|336252056|ref|YP_004586024.1|	-	0.018	14.5	1.7	3	7.2	1.7	2.8	1	1	0	1	1	1	0	PhoH-like	protein
ATPase_2	PF01637.18	gi|336252056|ref|YP_004586024.1|	-	0.025	14.5	0.0	0.048	13.6	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_10	PF12846.7	gi|336252056|ref|YP_004586024.1|	-	0.084	11.8	0.0	0.14	11.0	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
AAA_18	PF13238.6	gi|336252056|ref|YP_004586024.1|	-	0.087	13.4	0.0	0.19	12.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|336252056|ref|YP_004586024.1|	-	0.098	12.0	0.0	0.21	10.9	0.0	1.5	1	0	0	1	1	1	0	KaiC
DUF87	PF01935.17	gi|336252056|ref|YP_004586024.1|	-	0.13	12.4	0.4	0.35	10.9	0.1	1.8	1	1	1	2	2	2	0	Helicase	HerA,	central	domain
AAA_lid_4	PF17864.1	gi|336252056|ref|YP_004586024.1|	-	0.48	10.2	2.9	0.78	9.5	1.0	2.1	2	0	0	2	2	2	0	RuvB	AAA	lid	domain
MCM	PF00493.23	gi|336252056|ref|YP_004586024.1|	-	0.5	9.4	2.4	18	4.3	0.0	2.6	1	1	0	2	2	2	0	MCM	P-loop	domain
Peptidase_S8	PF00082.22	gi|336252057|ref|YP_004586025.1|	-	2.1e-34	119.2	5.3	3.1e-34	118.6	5.3	1.3	1	0	0	1	1	1	1	Subtilase	family
Peptidase_M14	PF00246.24	gi|336252058|ref|YP_004586026.1|	-	2.8e-17	63.5	0.0	4.1e-17	62.9	0.0	1.2	1	0	0	1	1	1	1	Zinc	carboxypeptidase
DUF4177	PF13783.6	gi|336252059|ref|YP_004586027.1|	-	1.1e-06	28.9	0.1	1.6e-06	28.3	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
YojJ	PF10372.9	gi|336252060|ref|YP_004586028.1|	-	0.03	14.4	0.0	2.8	8.1	0.0	2.4	2	0	0	2	2	2	0	Bacterial	membrane-spanning	protein	N-terminus
TAT_signal	PF10518.9	gi|336252061|ref|YP_004586029.1|	-	0.25	11.2	2.6	0.46	10.4	2.6	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TRAM	PF01938.20	gi|336252063|ref|YP_004586031.1|	-	3.2e-13	49.5	2.5	4.7e-13	48.9	2.5	1.3	1	0	0	1	1	1	1	TRAM	domain
Red1	PF07964.11	gi|336252063|ref|YP_004586031.1|	-	0.65	8.2	4.3	0.79	7.9	4.3	1.0	1	0	0	1	1	1	0	Rec10	/	Red1
DNA_pol_B_exo1	PF03104.19	gi|336252064|ref|YP_004586032.1|	-	8.2e-05	21.9	0.1	0.00026	20.3	0.1	1.8	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.6	gi|336252064|ref|YP_004586032.1|	-	0.0038	17.2	0.5	0.051	13.6	0.1	2.6	2	1	1	3	3	3	1	RNase_H	superfamily
Pro_CA	PF00484.19	gi|336252065|ref|YP_004586033.1|	-	4e-14	53.2	0.0	5.9e-14	52.6	0.0	1.3	1	0	0	1	1	1	1	Carbonic	anhydrase
ABM	PF03992.16	gi|336252066|ref|YP_004586034.1|	-	2.5e-17	62.7	2.7	3.2e-17	62.4	2.7	1.1	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
AhpC-TSA	PF00578.21	gi|336252067|ref|YP_004586035.1|	-	1.3e-21	76.8	0.0	1.5e-21	76.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336252067|ref|YP_004586035.1|	-	4e-19	68.8	0.0	4.7e-19	68.5	0.0	1.0	1	0	0	1	1	1	1	Redoxin
HlyD_2	PF12700.7	gi|336252067|ref|YP_004586035.1|	-	0.015	14.1	0.0	0.02	13.7	0.0	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
Top6b_C	PF18000.1	gi|336252067|ref|YP_004586035.1|	-	0.046	13.9	0.0	0.065	13.4	0.0	1.2	1	0	0	1	1	1	0	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|336252068|ref|YP_004586036.1|	-	1.7e-60	204.7	3.7	1.7e-60	204.7	3.7	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336252068|ref|YP_004586036.1|	-	5.4e-21	75.0	6.0	1.2e-17	64.2	0.8	3.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252068|ref|YP_004586036.1|	-	1.4e-15	57.3	0.5	9.5e-09	34.9	0.1	3.1	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336252068|ref|YP_004586036.1|	-	9.8e-10	38.5	0.9	0.00098	19.3	0.1	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_dim	PF02852.22	gi|336252068|ref|YP_004586036.1|	-	8.1e-08	32.5	0.0	2.1e-07	31.2	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
HI0933_like	PF03486.14	gi|336252068|ref|YP_004586036.1|	-	6.1e-07	28.5	4.7	0.069	11.8	0.1	4.1	3	1	1	4	4	4	3	HI0933-like	protein
3HCDH_N	PF02737.18	gi|336252068|ref|YP_004586036.1|	-	2.2e-05	24.4	0.6	2.2e-05	24.4	0.6	2.3	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|336252068|ref|YP_004586036.1|	-	0.00014	21.6	10.9	1.2	8.7	4.9	4.1	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_2	PF03446.15	gi|336252068|ref|YP_004586036.1|	-	0.00045	20.4	0.3	0.0018	18.4	0.1	2.0	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|336252068|ref|YP_004586036.1|	-	0.0091	15.4	0.0	0.035	13.4	0.0	1.9	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DpaA_N	PF16924.5	gi|336252068|ref|YP_004586036.1|	-	0.0096	16.0	0.3	3.1	7.9	0.1	3.2	3	0	0	3	3	3	1	Dipicolinate	synthase	subunit	A	N-terminal	domain
Lycopene_cycl	PF05834.12	gi|336252068|ref|YP_004586036.1|	-	0.018	14.1	3.1	0.94	8.5	0.0	3.0	2	1	1	3	3	3	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|336252068|ref|YP_004586036.1|	-	0.033	13.8	2.8	0.17	11.4	1.1	2.6	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336252068|ref|YP_004586036.1|	-	0.054	13.5	0.0	0.13	12.2	0.0	1.7	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_oxidored	PF12831.7	gi|336252068|ref|YP_004586036.1|	-	0.059	12.7	0.1	0.059	12.7	0.1	3.1	2	1	0	3	3	3	0	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|336252068|ref|YP_004586036.1|	-	0.064	12.5	0.3	6.2	6.0	0.0	2.3	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.22	gi|336252068|ref|YP_004586036.1|	-	0.065	12.3	5.8	0.13	11.3	0.6	2.7	2	1	0	2	2	2	0	Glucose	inhibited	division	protein	A
TrkA_N	PF02254.18	gi|336252068|ref|YP_004586036.1|	-	0.097	12.9	1.5	14	6.0	0.3	3.6	3	1	0	3	3	3	0	TrkA-N	domain
NAD_binding_9	PF13454.6	gi|336252068|ref|YP_004586036.1|	-	0.13	12.3	8.4	34	4.4	0.0	4.2	2	2	1	4	4	4	0	FAD-NAD(P)-binding
NAD_binding_7	PF13241.6	gi|336252068|ref|YP_004586036.1|	-	0.18	12.2	1.8	4.6	7.7	0.1	2.6	2	1	0	2	2	2	0	Putative	NAD(P)-binding
RNA_POL_M_15KD	PF02150.16	gi|336252069|ref|YP_004586037.1|	-	7.9e-08	32.0	4.4	1.6e-07	31.1	1.9	2.3	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|336252069|ref|YP_004586037.1|	-	7.2e-05	22.6	7.1	0.0014	18.5	1.9	2.2	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.18	gi|336252069|ref|YP_004586037.1|	-	0.0087	15.9	12.3	0.0095	15.8	0.6	4.0	4	0	0	4	4	4	1	Transcription	factor	S-II	(TFIIS)
zf-RRN7	PF11781.8	gi|336252069|ref|YP_004586037.1|	-	0.0098	15.6	7.1	8.3	6.2	0.2	4.3	4	0	0	4	4	4	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DZR	PF12773.7	gi|336252069|ref|YP_004586037.1|	-	0.011	15.8	1.5	0.011	15.8	1.5	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336252069|ref|YP_004586037.1|	-	0.044	13.2	6.6	0.23	10.9	0.9	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336252069|ref|YP_004586037.1|	-	0.092	12.7	5.3	3.4	7.7	0.0	3.3	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
zf_UBZ	PF18439.1	gi|336252069|ref|YP_004586037.1|	-	0.16	11.6	5.9	1.6	8.4	0.1	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-UBP	PF02148.19	gi|336252069|ref|YP_004586037.1|	-	0.37	11.2	5.3	4.8	7.6	1.0	2.2	2	0	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
C1_1	PF00130.22	gi|336252069|ref|YP_004586037.1|	-	0.65	9.9	6.6	0.42	10.5	2.9	2.2	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-C4pol	PF14260.6	gi|336252069|ref|YP_004586037.1|	-	1.3	9.6	8.4	0.38	11.3	4.9	1.9	2	0	0	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
Rubredoxin_2	PF18073.1	gi|336252069|ref|YP_004586037.1|	-	1.3	8.8	9.9	19	5.1	0.3	3.3	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF2318	PF10080.9	gi|336252069|ref|YP_004586037.1|	-	4.1	7.6	7.3	2.8	8.1	2.0	2.5	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
zinc-ribbons_6	PF07191.12	gi|336252069|ref|YP_004586037.1|	-	9.6	6.3	10.8	0.42	10.6	2.4	2.4	2	1	0	2	2	2	0	zinc-ribbons
DUF4398	PF14346.6	gi|336252070|ref|YP_004586038.1|	-	0.0015	19.1	9.7	0.0031	18.1	9.7	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4398)
Glyco_hydro_42M	PF08532.10	gi|336252070|ref|YP_004586038.1|	-	0.03	13.8	0.0	0.071	12.6	0.0	1.5	1	0	0	1	1	1	0	Beta-galactosidase	trimerisation	domain
PGF-CTERM	PF18204.1	gi|336252070|ref|YP_004586038.1|	-	0.039	13.9	0.1	0.067	13.2	0.1	1.4	1	0	0	1	1	1	0	PGF-CTERM	motif
DUF2564	PF10819.8	gi|336252070|ref|YP_004586038.1|	-	0.38	11.2	3.7	0.31	11.4	1.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2564)
HATPase_c	PF02518.26	gi|336252071|ref|YP_004586039.1|	-	4.2e-32	111.0	0.0	3.1e-30	104.9	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336252071|ref|YP_004586039.1|	-	7.2e-13	48.4	13.0	2.3e-12	46.8	0.2	4.3	3	1	1	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|336252071|ref|YP_004586039.1|	-	4.7e-11	42.9	0.0	1.2e-10	41.6	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
HisKA_4TM	PF16926.5	gi|336252071|ref|YP_004586039.1|	-	7e-07	28.9	0.0	1.9e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|336252071|ref|YP_004586039.1|	-	5.4e-05	23.1	0.1	0.00014	21.8	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Rotamase	PF00639.21	gi|336252071|ref|YP_004586039.1|	-	0.004	18.1	2.2	0.9	10.5	0.3	2.9	3	0	0	3	3	2	1	PPIC-type	PPIASE	domain
HATPase_c_5	PF14501.6	gi|336252071|ref|YP_004586039.1|	-	0.0045	16.9	0.0	0.0093	15.9	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
ZapB	PF06005.12	gi|336252071|ref|YP_004586039.1|	-	0.037	14.5	3.6	0.037	14.5	3.6	2.8	3	0	0	3	3	2	0	Cell	division	protein	ZapB
PAS_7	PF12860.7	gi|336252071|ref|YP_004586039.1|	-	0.039	14.1	1.3	0.16	12.2	0.1	2.3	2	0	0	2	2	2	0	PAS	fold
OmpH	PF03938.14	gi|336252071|ref|YP_004586039.1|	-	0.041	14.2	12.3	0.64	10.4	2.2	2.5	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
bZIP_1	PF00170.21	gi|336252071|ref|YP_004586039.1|	-	0.047	13.8	7.4	0.99	9.5	0.6	2.5	2	0	0	2	2	2	0	bZIP	transcription	factor
dCache_3	PF14827.6	gi|336252071|ref|YP_004586039.1|	-	0.05	13.2	4.7	0.89	9.2	0.0	2.8	2	1	1	3	3	3	0	Double	sensory	domain	of	two-component	sensor	kinase
FlgN	PF05130.12	gi|336252071|ref|YP_004586039.1|	-	0.067	13.7	4.2	2	8.9	0.6	2.6	3	0	0	3	3	2	0	FlgN	protein
DUF3618	PF12277.8	gi|336252071|ref|YP_004586039.1|	-	0.078	13.2	1.5	0.19	12.0	1.5	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3618)
GAS	PF13851.6	gi|336252071|ref|YP_004586039.1|	-	0.11	11.9	7.8	1.9	7.8	1.7	2.2	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
H-kinase_dim	PF02895.14	gi|336252071|ref|YP_004586039.1|	-	0.19	12.2	3.5	8.7	6.8	0.4	2.9	3	0	0	3	3	3	0	Signal	transducing	histidine	kinase,	homodimeric	domain
GrpE	PF01025.19	gi|336252071|ref|YP_004586039.1|	-	0.19	11.4	6.0	3.4	7.3	0.1	2.5	2	0	0	2	2	2	0	GrpE
Ax_dynein_light	PF10211.9	gi|336252071|ref|YP_004586039.1|	-	0.21	11.5	4.8	0.63	10.0	0.5	2.4	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
KxDL	PF10241.9	gi|336252071|ref|YP_004586039.1|	-	0.23	11.8	3.9	3.3	8.1	0.9	2.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
bZIP_2	PF07716.15	gi|336252071|ref|YP_004586039.1|	-	0.36	10.9	19.3	0.34	11.0	3.4	2.6	3	0	0	3	3	2	0	Basic	region	leucine	zipper
BLOC1_2	PF10046.9	gi|336252071|ref|YP_004586039.1|	-	0.49	10.7	5.1	4.8	7.6	0.4	2.5	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TINF2_N	PF14973.6	gi|336252071|ref|YP_004586039.1|	-	0.52	10.7	7.6	11	6.4	0.5	3.3	3	1	0	3	3	3	0	TERF1-interacting	nuclear	factor	2	N-terminus
vATP-synt_E	PF01991.18	gi|336252071|ref|YP_004586039.1|	-	0.54	9.6	5.8	0.94	8.9	0.6	2.8	3	0	0	3	3	3	0	ATP	synthase	(E/31	kDa)	subunit
DivIC	PF04977.15	gi|336252071|ref|YP_004586039.1|	-	1.1	9.1	12.3	1.5	8.6	3.9	2.6	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4298	PF14131.6	gi|336252071|ref|YP_004586039.1|	-	1.4	9.0	6.4	0.53	10.3	1.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Snapin_Pallidin	PF14712.6	gi|336252071|ref|YP_004586039.1|	-	1.5	9.3	5.8	1.7	9.1	1.5	2.5	2	0	0	2	2	2	0	Snapin/Pallidin
TMF_TATA_bd	PF12325.8	gi|336252071|ref|YP_004586039.1|	-	1.8	8.8	11.0	1.5	9.0	1.7	2.8	3	0	0	3	3	2	0	TATA	element	modulatory	factor	1	TATA	binding
ADIP	PF11559.8	gi|336252071|ref|YP_004586039.1|	-	2.2	8.3	8.7	3.9	7.5	0.3	2.2	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
PilO	PF04350.13	gi|336252071|ref|YP_004586039.1|	-	2.4	8.3	6.9	0.27	11.4	0.3	2.3	3	0	0	3	3	2	0	Pilus	assembly	protein,	PilO
ABC_tran_CTD	PF16326.5	gi|336252071|ref|YP_004586039.1|	-	3.6	7.9	15.1	1.9	8.8	4.8	2.5	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Tox-ODYAM1	PF15642.6	gi|336252071|ref|YP_004586039.1|	-	5.6	5.8	6.5	10	5.0	0.7	2.3	1	1	1	2	2	2	0	Toxin	in	Odyssella	and	Amoebophilus
DUF2203	PF09969.9	gi|336252071|ref|YP_004586039.1|	-	5.8	7.7	6.3	10	6.9	0.2	3.0	2	1	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
HNOBA	PF07701.14	gi|336252071|ref|YP_004586039.1|	-	6.1	6.2	9.4	6.2	6.2	0.4	2.3	2	0	0	2	2	2	0	Heme	NO	binding	associated
His_kinase	PF06580.13	gi|336252071|ref|YP_004586039.1|	-	8.1	6.9	6.4	1.5	9.2	1.1	2.6	4	0	0	4	4	2	0	Histidine	kinase
PAS_4	PF08448.10	gi|336252072|ref|YP_004586040.1|	-	8.3e-53	177.3	21.3	2e-12	47.4	0.2	6.6	6	0	0	6	6	6	6	PAS	fold
PAS_3	PF08447.12	gi|336252072|ref|YP_004586040.1|	-	3.1e-33	113.9	8.0	1.8e-15	57.0	0.0	6.8	7	1	0	7	7	6	2	PAS	fold
HATPase_c	PF02518.26	gi|336252072|ref|YP_004586040.1|	-	9e-30	103.5	0.0	3.7e-29	101.5	0.0	2.1	2	0	0	2	2	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336252072|ref|YP_004586040.1|	-	1.4e-28	99.2	1.4	0.00011	22.4	0.0	6.8	7	0	0	7	7	6	6	PAS	domain
PAS_8	PF13188.7	gi|336252072|ref|YP_004586040.1|	-	4.7e-20	71.2	1.3	6.8e-08	32.4	0.0	6.2	6	0	0	6	6	6	2	PAS	domain
PAS	PF00989.25	gi|336252072|ref|YP_004586040.1|	-	9e-19	67.5	3.2	0.00067	19.6	0.0	7.0	6	1	0	6	6	6	3	PAS	fold
HisKA	PF00512.25	gi|336252072|ref|YP_004586040.1|	-	6.5e-11	42.1	0.1	6.5e-11	42.1	0.1	4.2	4	0	0	4	4	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|336252072|ref|YP_004586040.1|	-	1.5e-09	38.4	0.0	0.36	11.4	0.0	6.8	7	0	0	7	7	7	1	PAS	domain
PAS_7	PF12860.7	gi|336252072|ref|YP_004586040.1|	-	4.5e-07	30.0	7.5	0.0025	18.0	0.1	6.2	5	1	0	5	5	5	1	PAS	fold
HTH_11	PF08279.12	gi|336252072|ref|YP_004586040.1|	-	1.2e-06	28.4	0.0	2.7e-06	27.2	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|336252072|ref|YP_004586040.1|	-	3.3e-06	27.1	0.0	9.6e-06	25.6	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HATPase_c_5	PF14501.6	gi|336252072|ref|YP_004586040.1|	-	6.5e-06	26.0	0.0	1.7e-05	24.7	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
TrmB	PF01978.19	gi|336252072|ref|YP_004586040.1|	-	1.2e-05	25.1	0.0	2.9e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.6	gi|336252072|ref|YP_004586040.1|	-	9.9e-05	22.0	0.0	0.00037	20.2	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|336252072|ref|YP_004586040.1|	-	0.00014	21.8	0.0	0.00034	20.5	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.6	gi|336252072|ref|YP_004586040.1|	-	0.00094	19.2	0.0	0.0028	17.6	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|336252072|ref|YP_004586040.1|	-	0.0027	17.9	0.0	0.0078	16.4	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
FaeA	PF04703.12	gi|336252072|ref|YP_004586040.1|	-	0.0065	16.8	0.0	0.016	15.6	0.0	1.6	1	0	0	1	1	1	1	FaeA-like	protein
sCache_3_3	PF17202.4	gi|336252072|ref|YP_004586040.1|	-	0.0099	16.3	0.0	10	6.6	0.0	3.6	3	0	0	3	3	3	0	Single	cache	domain	3
Pro_Al_protease	PF02983.14	gi|336252072|ref|YP_004586040.1|	-	0.013	15.5	0.2	0.034	14.2	0.2	1.7	1	0	0	1	1	1	0	Alpha-lytic	protease	prodomain
Fe_dep_repress	PF01325.19	gi|336252072|ref|YP_004586040.1|	-	0.024	14.8	0.0	0.056	13.6	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HATPase_c_3	PF13589.6	gi|336252072|ref|YP_004586040.1|	-	0.028	14.2	0.0	0.067	13.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HTH_22	PF13309.6	gi|336252072|ref|YP_004586040.1|	-	0.036	14.1	0.0	0.094	12.8	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.6	gi|336252072|ref|YP_004586040.1|	-	0.036	14.0	0.0	0.071	13.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
YopX	PF09643.10	gi|336252072|ref|YP_004586040.1|	-	0.041	14.0	0.0	0.33	11.0	0.0	2.4	2	0	0	2	2	2	0	YopX	protein
SgrR_N	PF12793.7	gi|336252072|ref|YP_004586040.1|	-	0.045	14.0	0.0	0.13	12.5	0.0	1.7	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_7	PF02796.15	gi|336252072|ref|YP_004586040.1|	-	0.053	13.6	0.0	0.16	12.1	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Sigma70_r4_2	PF08281.12	gi|336252072|ref|YP_004586040.1|	-	0.054	13.2	0.0	0.16	11.6	0.0	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336252072|ref|YP_004586040.1|	-	0.086	12.7	0.1	0.25	11.3	0.1	1.8	1	0	0	1	1	1	0	MarR	family
GerE	PF00196.19	gi|336252072|ref|YP_004586040.1|	-	0.11	12.0	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
UPF0149	PF03695.13	gi|336252072|ref|YP_004586040.1|	-	0.21	11.9	5.7	1.5	9.1	0.1	4.2	4	1	0	4	4	3	0	Uncharacterised	protein	family	(UPF0149)
dCache_3	PF14827.6	gi|336252072|ref|YP_004586040.1|	-	0.25	10.9	0.8	19	4.8	0.0	4.1	5	2	2	7	7	6	0	Double	sensory	domain	of	two-component	sensor	kinase
PAP2	PF01569.21	gi|336252073|ref|YP_004586041.1|	-	5.5	6.8	19.8	0.028	14.2	6.6	2.8	3	0	0	3	3	3	0	PAP2	superfamily
ABC2_membrane	PF01061.24	gi|336252074|ref|YP_004586042.1|	-	8.4e-31	107.0	18.1	1.1e-30	106.7	18.1	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|336252074|ref|YP_004586042.1|	-	4.2e-17	62.3	16.6	4.2e-17	62.3	16.6	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336252074|ref|YP_004586042.1|	-	0.12	11.7	21.3	0.22	10.7	21.2	1.5	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|336252075|ref|YP_004586043.1|	-	5.1e-30	104.8	0.0	7.2e-30	104.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252075|ref|YP_004586043.1|	-	4.1e-15	56.4	0.8	1.2e-10	41.7	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336252075|ref|YP_004586043.1|	-	2.5e-09	37.7	0.0	4.9e-09	36.8	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|336252075|ref|YP_004586043.1|	-	0.0051	16.5	0.4	0.013	15.3	0.4	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336252075|ref|YP_004586043.1|	-	0.051	14.0	0.3	0.14	12.5	0.1	1.8	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA	PF00004.29	gi|336252075|ref|YP_004586043.1|	-	0.067	13.6	0.0	0.75	10.2	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|336252075|ref|YP_004586043.1|	-	0.076	12.4	0.2	3.1	7.2	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|336252075|ref|YP_004586043.1|	-	0.082	12.6	0.0	2.6	7.7	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336252075|ref|YP_004586043.1|	-	0.11	12.8	0.1	0.58	10.4	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|336252075|ref|YP_004586043.1|	-	0.11	12.7	0.0	0.3	11.4	0.0	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Zeta_toxin	PF06414.12	gi|336252075|ref|YP_004586043.1|	-	0.12	11.7	0.0	0.21	10.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_23	PF13476.6	gi|336252075|ref|YP_004586043.1|	-	0.32	11.5	3.1	0.49	10.9	3.1	1.5	1	1	0	1	1	1	0	AAA	domain
HTH_10	PF04967.12	gi|336252076|ref|YP_004586044.1|	-	8.1e-19	67.2	0.1	1.3e-18	66.6	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252076|ref|YP_004586044.1|	-	2e-12	47.2	1.0	2e-12	47.2	1.0	1.9	1	1	1	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|336252076|ref|YP_004586044.1|	-	0.0074	15.8	0.1	0.13	11.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252076|ref|YP_004586044.1|	-	0.0092	15.8	0.1	0.018	14.9	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336252076|ref|YP_004586044.1|	-	0.016	15.0	0.9	0.46	10.4	0.6	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
peroxidase	PF00141.23	gi|336252077|ref|YP_004586045.1|	-	3.5e-94	314.8	0.0	3.2e-52	177.5	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
STI1	PF17830.1	gi|336252077|ref|YP_004586045.1|	-	0.018	15.0	0.1	0.053	13.5	0.0	1.8	2	0	0	2	2	2	0	STI1	domain
FGAR-AT_linker	PF18072.1	gi|336252077|ref|YP_004586045.1|	-	1.1	9.9	0.0	1.1	9.9	0.0	3.0	4	0	0	4	4	4	0	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
Glyco_hydro_3	PF00933.21	gi|336252078|ref|YP_004586046.1|	-	4.1e-79	266.2	0.0	5.3e-79	265.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336252078|ref|YP_004586046.1|	-	4.5e-45	154.1	0.0	8.1e-45	153.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336252078|ref|YP_004586046.1|	-	9.4e-18	64.1	0.1	2.7e-17	62.7	0.1	1.8	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|336252078|ref|YP_004586046.1|	-	0.007	16.6	0.1	0.023	15.0	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|336252078|ref|YP_004586046.1|	-	0.16	12.3	0.4	0.37	11.1	0.0	1.7	2	0	0	2	2	2	0	CARDB
Glyco_hydro_3_C	PF01915.22	gi|336252080|ref|YP_004586048.1|	-	3.3e-58	197.0	0.0	8.2e-58	195.7	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|336252080|ref|YP_004586048.1|	-	1.5e-51	175.7	0.0	2.8e-51	174.8	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|336252080|ref|YP_004586048.1|	-	1.5e-21	76.3	0.3	3.3e-21	75.2	0.3	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
Usp	PF00582.26	gi|336252081|ref|YP_004586049.1|	-	8.3e-21	75.0	3.3	1.8e-20	73.9	3.3	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
MFS_1	PF07690.16	gi|336252082|ref|YP_004586050.1|	-	6.5e-44	150.3	50.7	6.9e-36	123.9	26.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|336252082|ref|YP_004586050.1|	-	6.2e-08	31.9	11.8	6.2e-08	31.9	11.8	2.2	1	1	1	2	2	2	1	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|336252082|ref|YP_004586050.1|	-	0.001	17.5	9.4	0.001	17.5	9.4	2.4	2	0	0	2	2	2	2	Transmembrane	secretion	effector
DUF3040	PF11239.8	gi|336252082|ref|YP_004586050.1|	-	0.032	14.5	6.8	0.032	14.5	6.8	6.0	4	3	2	6	6	6	0	Protein	of	unknown	function	(DUF3040)
DUF4188	PF13826.6	gi|336252083|ref|YP_004586051.1|	-	6.9e-09	36.1	0.1	8.1e-09	35.9	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4188)
ABM	PF03992.16	gi|336252083|ref|YP_004586051.1|	-	2.9e-06	27.3	0.2	3.9e-06	26.9	0.2	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
DUF3291	PF11695.8	gi|336252083|ref|YP_004586051.1|	-	0.0081	15.9	1.1	0.015	15.0	1.1	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF3291)
Cys_Met_Meta_PP	PF01053.20	gi|336252084|ref|YP_004586052.1|	-	2.3e-127	424.7	0.0	2.6e-127	424.5	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|336252084|ref|YP_004586052.1|	-	1.1e-08	34.7	0.6	4e-08	33.0	0.3	1.9	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|336252084|ref|YP_004586052.1|	-	2.8e-05	23.5	0.0	6.6e-05	22.3	0.0	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|336252084|ref|YP_004586052.1|	-	0.00019	20.8	0.0	0.00026	20.3	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|336252084|ref|YP_004586052.1|	-	0.023	13.7	0.0	0.066	12.2	0.0	1.9	1	1	1	2	2	2	0	Aminotransferase	class-V
DUF21	PF01595.20	gi|336252085|ref|YP_004586053.1|	-	4.6e-27	94.9	0.4	6.5e-27	94.4	0.4	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|336252085|ref|YP_004586053.1|	-	7.8e-07	29.5	0.6	0.011	16.1	0.0	2.4	1	1	1	2	2	2	2	CBS	domain
malic	PF00390.19	gi|336252085|ref|YP_004586053.1|	-	0.0022	17.8	0.0	0.012	15.4	0.0	2.0	2	0	0	2	2	2	1	Malic	enzyme,	N-terminal	domain
DUF21	PF01595.20	gi|336252086|ref|YP_004586054.1|	-	8.7e-28	97.2	0.0	1.2e-27	96.8	0.0	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|336252086|ref|YP_004586054.1|	-	7.8e-07	29.4	1.2	2.8e-05	24.5	0.0	2.3	2	0	0	2	2	2	1	CBS	domain
FHIPEP	PF00771.20	gi|336252086|ref|YP_004586054.1|	-	0.13	10.7	0.2	0.16	10.4	0.2	1.1	1	0	0	1	1	1	0	FHIPEP	family
Usp	PF00582.26	gi|336252087|ref|YP_004586055.1|	-	4.1e-27	95.4	0.5	4.6e-27	95.3	0.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|336252087|ref|YP_004586055.1|	-	0.0002	20.8	0.1	0.00026	20.5	0.1	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Adhesin_P1_N	PF18652.1	gi|336252087|ref|YP_004586055.1|	-	0.018	15.0	2.0	2.3	8.3	0.1	2.3	1	1	0	2	2	2	0	Adhesin	P1	N-terminal	domain
PAS_9	PF13426.7	gi|336252088|ref|YP_004586056.1|	-	6.8e-48	161.2	1.3	1.5e-18	67.0	0.1	4.7	4	0	0	4	4	4	4	PAS	domain
PAS_4	PF08448.10	gi|336252088|ref|YP_004586056.1|	-	2.4e-41	140.4	12.0	1.7e-12	47.6	0.1	4.5	4	0	0	4	4	4	4	PAS	fold
PAS	PF00989.25	gi|336252088|ref|YP_004586056.1|	-	4.8e-36	123.2	3.6	8.5e-14	51.5	0.1	4.5	4	0	0	4	4	4	4	PAS	fold
HATPase_c	PF02518.26	gi|336252088|ref|YP_004586056.1|	-	2.5e-27	95.6	0.0	2e-26	92.7	0.0	2.6	4	0	0	4	4	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336252088|ref|YP_004586056.1|	-	1.7e-26	92.3	6.0	3.4e-07	30.5	0.3	5.2	5	0	0	5	5	5	4	PAS	fold
PAS_8	PF13188.7	gi|336252088|ref|YP_004586056.1|	-	3.6e-14	52.4	0.7	0.00024	21.0	0.1	4.0	3	0	0	3	3	3	3	PAS	domain
PAS_7	PF12860.7	gi|336252088|ref|YP_004586056.1|	-	6.2e-12	45.7	3.7	0.00042	20.5	0.1	4.8	4	1	0	4	4	4	2	PAS	fold
HisKA	PF00512.25	gi|336252088|ref|YP_004586056.1|	-	8.5e-10	38.5	0.0	8.5e-10	38.5	0.0	5.8	6	1	1	7	7	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|336252088|ref|YP_004586056.1|	-	2.4e-09	37.7	1.0	0.014	16.0	0.1	4.3	4	0	0	4	4	4	2	PAS	domain
HATPase_c_5	PF14501.6	gi|336252088|ref|YP_004586056.1|	-	0.00012	22.0	0.0	0.00025	20.9	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
Rbx_binding	PF18113.1	gi|336252088|ref|YP_004586056.1|	-	0.001	18.8	0.2	0.46	10.3	0.0	2.8	3	0	0	3	3	3	1	Rubredoxin	binding	C-terminal	domain
HTH_20	PF12840.7	gi|336252088|ref|YP_004586056.1|	-	0.026	14.6	0.2	0.092	12.8	0.2	2.0	1	0	0	1	1	1	0	Helix-turn-helix	domain
HATPase_c_2	PF13581.6	gi|336252088|ref|YP_004586056.1|	-	0.051	13.5	0.5	0.18	11.8	0.0	2.2	2	0	0	2	2	1	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336252088|ref|YP_004586056.1|	-	0.055	13.3	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FERM_f0	PF16511.5	gi|336252088|ref|YP_004586056.1|	-	0.083	13.2	0.3	3.4	8.0	0.1	2.7	2	0	0	2	2	2	0	N-terminal	or	F0	domain	of	Talin-head	FERM
OmpH	PF03938.14	gi|336252088|ref|YP_004586056.1|	-	0.23	11.8	11.4	1.5	9.1	2.1	3.6	3	0	0	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Sec34	PF04136.15	gi|336252088|ref|YP_004586056.1|	-	0.27	11.1	3.6	19	5.1	0.0	3.1	3	0	0	3	3	3	0	Sec34-like	family
UPF0242	PF06785.11	gi|336252088|ref|YP_004586056.1|	-	0.65	10.1	11.0	12	5.9	0.9	3.7	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF2353	PF09789.9	gi|336252088|ref|YP_004586056.1|	-	0.71	9.2	6.6	1.2	8.4	0.1	2.8	3	0	0	3	3	3	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF1351	PF07083.11	gi|336252088|ref|YP_004586056.1|	-	0.72	9.6	4.9	2.2	8.0	0.1	3.3	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1351)
UMP1	PF05348.11	gi|336252088|ref|YP_004586056.1|	-	1	9.6	4.6	10	6.4	0.0	3.9	5	0	0	5	5	4	0	Proteasome	maturation	factor	UMP1
E2F_CC-MB	PF16421.5	gi|336252088|ref|YP_004586056.1|	-	5.2	7.5	8.2	11	6.4	0.5	3.1	2	0	0	2	2	2	0	E2F	transcription	factor	CC-MB	domain
FlaG	PF03646.15	gi|336252088|ref|YP_004586056.1|	-	5.6	7.2	10.8	1.3	9.2	1.2	3.9	5	0	0	5	5	4	0	FlaG	protein
DLP_helical	PF18709.1	gi|336252088|ref|YP_004586056.1|	-	5.6	6.1	6.7	4.3	6.5	0.6	2.8	3	0	0	3	3	3	0	Dynamin-like	helical	domain
Beta-lactamase	PF00144.24	gi|336252089|ref|YP_004586057.1|	-	4.8e-57	193.7	4.0	8.1e-57	192.9	3.3	1.6	2	0	0	2	2	2	1	Beta-lactamase
Methyltransf_23	PF13489.6	gi|336252090|ref|YP_004586058.1|	-	1.5e-23	83.4	0.0	2.4e-23	82.8	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336252090|ref|YP_004586058.1|	-	2.6e-21	76.1	0.0	5.6e-21	75.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252090|ref|YP_004586058.1|	-	7.7e-21	74.6	0.0	1.3e-20	73.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336252090|ref|YP_004586058.1|	-	1.4e-19	70.4	0.0	2.3e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336252090|ref|YP_004586058.1|	-	9.8e-16	57.8	0.0	1.3e-15	57.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336252090|ref|YP_004586058.1|	-	8.3e-12	45.7	0.0	1.7e-11	44.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|336252090|ref|YP_004586058.1|	-	0.0001	21.8	0.0	0.00015	21.2	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
MetW	PF07021.12	gi|336252090|ref|YP_004586058.1|	-	0.00011	21.9	0.0	0.00025	20.7	0.0	1.5	1	1	1	2	2	2	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|336252090|ref|YP_004586058.1|	-	0.00013	21.4	0.0	0.00016	21.1	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
UPF0020	PF01170.18	gi|336252090|ref|YP_004586058.1|	-	0.00022	21.0	0.0	0.00066	19.4	0.0	1.7	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|336252090|ref|YP_004586058.1|	-	0.00025	20.6	0.0	0.00044	19.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|336252090|ref|YP_004586058.1|	-	0.022	14.5	0.0	0.033	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_29	PF03141.16	gi|336252090|ref|YP_004586058.1|	-	0.097	11.2	0.0	0.13	10.8	0.0	1.3	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
HTH_20	PF12840.7	gi|336252091|ref|YP_004586059.1|	-	1.9e-07	31.0	0.0	4.5e-07	29.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
GFA	PF04828.14	gi|336252091|ref|YP_004586059.1|	-	1.4e-05	25.4	0.3	0.00017	21.9	0.0	2.4	2	0	0	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.7	gi|336252091|ref|YP_004586059.1|	-	0.0099	15.9	3.3	0.47	10.5	0.2	2.5	2	0	0	2	2	2	2	Double	zinc	ribbon
zf-HYPF	PF07503.12	gi|336252091|ref|YP_004586059.1|	-	0.02	14.7	5.8	0.07	12.9	0.1	3.1	3	0	0	3	3	3	0	HypF	finger
HTH_5	PF01022.20	gi|336252091|ref|YP_004586059.1|	-	0.17	11.8	0.1	2.5	8.0	0.1	2.3	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
zf-ribbon_3	PF13248.6	gi|336252091|ref|YP_004586059.1|	-	0.44	10.0	4.3	0.6	9.6	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
Elf1	PF05129.13	gi|336252091|ref|YP_004586059.1|	-	0.68	10.0	3.5	2.1	8.4	0.2	2.7	2	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
ADD_ATRX	PF17981.1	gi|336252091|ref|YP_004586059.1|	-	1.1	9.2	3.3	0.86	9.5	0.1	2.4	3	0	0	3	3	3	0	Cysteine	Rich	ADD	domain
zinc-ribbons_6	PF07191.12	gi|336252091|ref|YP_004586059.1|	-	3	7.9	6.0	23	5.1	0.9	2.8	2	1	1	3	3	3	0	zinc-ribbons
zf-ribbon_3	PF13248.6	gi|336252093|ref|YP_004586061.1|	-	0.00048	19.4	1.6	0.59	9.6	0.0	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|336252093|ref|YP_004586061.1|	-	0.048	13.7	0.2	0.12	12.4	0.2	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
BAG	PF02179.16	gi|336252093|ref|YP_004586061.1|	-	0.052	14.0	0.3	0.092	13.2	0.3	1.3	1	0	0	1	1	1	0	BAG	domain
CwsA	PF10814.8	gi|336252093|ref|YP_004586061.1|	-	0.056	13.6	0.2	0.065	13.4	0.2	1.1	1	0	0	1	1	1	0	Cell	wall	synthesis	protein	CwsA
DUF2072	PF09845.9	gi|336252093|ref|YP_004586061.1|	-	0.13	12.6	0.5	0.4	10.9	0.0	1.8	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
Nudix_N_2	PF14803.6	gi|336252093|ref|YP_004586061.1|	-	0.2	11.6	0.3	0.2	11.6	0.3	2.6	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2387	PF09526.10	gi|336252093|ref|YP_004586061.1|	-	0.22	11.7	2.0	0.4	10.9	0.1	2.0	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
HalX	PF08663.10	gi|336252093|ref|YP_004586061.1|	-	1.7	9.1	6.5	0.3	11.4	3.3	1.5	2	0	0	2	2	2	0	HalX	domain
zinc_ribbon_2	PF13240.6	gi|336252093|ref|YP_004586061.1|	-	6.2	6.7	5.7	8.1	6.3	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
RGI_lyase	PF18370.1	gi|336252094|ref|YP_004586062.1|	-	5.5e-30	103.5	0.0	1.6e-29	102.0	0.0	1.8	1	0	0	1	1	1	1	Rhamnogalacturonan	I	lyases	beta-sheet	domain
RicinB_lectin_2	PF14200.6	gi|336252094|ref|YP_004586062.1|	-	3.9e-19	69.2	3.8	2.1e-10	41.2	0.1	5.5	5	1	3	8	8	8	3	Ricin-type	beta-trefoil	lectin	domain-like
PKD	PF00801.20	gi|336252094|ref|YP_004586062.1|	-	1e-16	60.5	13.0	2.3e-08	33.8	2.2	3.0	3	0	0	3	3	3	2	PKD	domain
VCBS	PF13517.6	gi|336252094|ref|YP_004586062.1|	-	1.4e-08	35.1	5.0	0.15	12.7	0.1	5.2	4	0	0	4	4	4	3	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|336252094|ref|YP_004586062.1|	-	3.7e-06	27.0	20.1	0.014	15.5	4.1	4.1	3	0	0	3	3	3	3	FG-GAP	repeat
GOLD_2	PF13897.6	gi|336252094|ref|YP_004586062.1|	-	0.00054	20.5	0.8	0.47	11.0	0.0	2.9	2	1	0	2	2	2	1	Golgi-dynamics	membrane-trafficking
ChitinaseA_N	PF08329.10	gi|336252094|ref|YP_004586062.1|	-	0.0015	18.2	0.1	0.021	14.5	0.1	2.4	2	0	0	2	2	2	1	Chitinase	A,	N-terminal	domain
PQQ	PF01011.21	gi|336252094|ref|YP_004586062.1|	-	0.0027	17.6	0.0	0.73	9.9	0.0	3.8	3	0	0	3	3	3	1	PQQ	enzyme	repeat
He_PIG	PF05345.12	gi|336252094|ref|YP_004586062.1|	-	0.29	11.3	3.9	17	5.7	0.2	3.1	2	0	0	2	2	2	0	Putative	Ig	domain
DUF5011	PF16403.5	gi|336252094|ref|YP_004586062.1|	-	2.9	8.1	7.6	9.5	6.4	0.3	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5011)
Invasin_D3	PF09134.10	gi|336252094|ref|YP_004586062.1|	-	2.9	8.3	18.9	1.7	9.0	0.7	4.7	3	1	2	5	5	5	0	Invasin,	domain	3
FrhB_FdhB_C	PF04432.13	gi|336252095|ref|YP_004586063.1|	-	9.5e-31	106.7	0.0	2e-30	105.7	0.0	1.6	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|336252095|ref|YP_004586063.1|	-	7.6e-24	83.7	0.0	1.3e-23	82.9	0.0	1.4	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4	PF00037.27	gi|336252095|ref|YP_004586063.1|	-	5.6e-10	38.6	18.1	1.1e-06	28.2	4.9	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336252095|ref|YP_004586063.1|	-	8.2e-10	39.5	6.9	0.0015	19.4	1.5	3.7	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|336252095|ref|YP_004586063.1|	-	1e-09	38.4	7.0	1e-09	38.4	7.0	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252095|ref|YP_004586063.1|	-	1.3e-09	38.5	5.1	4.6e-05	23.9	0.3	3.2	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252095|ref|YP_004586063.1|	-	2.6e-08	33.8	13.4	2.5e-06	27.5	12.6	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336252095|ref|YP_004586063.1|	-	1.8e-07	31.2	11.1	2.2e-07	30.9	8.0	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252095|ref|YP_004586063.1|	-	2.1e-06	28.1	2.3	0.021	15.3	0.3	3.1	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336252095|ref|YP_004586063.1|	-	2.6e-05	24.1	4.7	2.6e-05	24.1	4.7	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336252095|ref|YP_004586063.1|	-	9.6e-05	22.6	21.4	0.00049	20.4	3.7	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336252095|ref|YP_004586063.1|	-	0.00014	22.1	2.9	0.00014	22.1	2.9	1.7	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336252095|ref|YP_004586063.1|	-	0.00026	20.9	2.9	0.00026	20.9	2.9	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
TonB_2	PF13103.6	gi|336252095|ref|YP_004586063.1|	-	0.038	14.2	0.0	0.093	13.0	0.0	1.6	1	0	0	1	1	1	0	TonB	C	terminal
Fer4_17	PF13534.6	gi|336252095|ref|YP_004586063.1|	-	0.043	14.4	14.0	0.44	11.1	2.8	3.0	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|336252095|ref|YP_004586063.1|	-	0.062	14.0	1.5	0.062	14.0	1.5	3.7	2	2	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|336252095|ref|YP_004586063.1|	-	0.1	13.2	17.0	0.28	11.8	2.9	3.3	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|336252095|ref|YP_004586063.1|	-	1.2	10.2	21.9	0.16	13.0	4.5	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|336252095|ref|YP_004586063.1|	-	1.3	9.9	18.8	0.58	11.0	2.8	2.8	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|336252095|ref|YP_004586063.1|	-	2.8	7.7	6.2	0.2	11.5	0.3	2.0	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
CTP_transf_3	PF02348.19	gi|336251462|ref|YP_004586065.1|	-	1.6e-26	93.6	0.0	2e-26	93.3	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase
NTP_transf_3	PF12804.7	gi|336251462|ref|YP_004586065.1|	-	1.8e-08	34.9	0.0	2.3e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF2064	PF09837.9	gi|336251462|ref|YP_004586065.1|	-	7.1e-05	22.6	0.1	0.00012	21.9	0.1	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
CofC	PF01983.16	gi|336251462|ref|YP_004586065.1|	-	0.00016	20.9	0.0	0.00023	20.4	0.0	1.2	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
IspD	PF01128.19	gi|336251462|ref|YP_004586065.1|	-	0.015	15.0	0.1	0.022	14.5	0.1	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Capsule_synth	PF05159.14	gi|336251463|ref|YP_004586066.1|	-	6.2e-05	22.6	0.0	9.5e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Capsule	polysaccharide	biosynthesis	protein
DUF354	PF04007.12	gi|336251463|ref|YP_004586066.1|	-	0.063	12.3	0.0	0.1	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF354)
Sulfatase	PF00884.23	gi|336251464|ref|YP_004586067.1|	-	1.2e-43	149.7	0.8	1.5e-43	149.4	0.8	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251464|ref|YP_004586067.1|	-	2.2e-09	37.4	0.3	4e-05	23.4	0.1	2.3	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
AAA_22	PF13401.6	gi|336251468|ref|YP_004586071.1|	-	8e-13	48.8	0.0	9.4e-12	45.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336251468|ref|YP_004586071.1|	-	7.5e-09	36.2	1.1	1.3e-07	32.2	0.3	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336251468|ref|YP_004586071.1|	-	7.3e-05	23.2	0.0	0.00064	20.2	0.0	2.5	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Bac_DnaA	PF00308.18	gi|336251468|ref|YP_004586071.1|	-	0.0021	17.9	0.0	0.77	9.5	0.0	2.3	2	0	0	2	2	2	2	Bacterial	dnaA	protein
AAA_assoc_2	PF16193.5	gi|336251468|ref|YP_004586071.1|	-	0.0034	17.7	0.1	0.009	16.3	0.1	1.7	1	0	0	1	1	1	1	AAA	C-terminal	domain
ABC_tran	PF00005.27	gi|336251468|ref|YP_004586071.1|	-	0.01	16.4	0.1	0.25	11.9	0.0	2.5	3	0	0	3	3	3	1	ABC	transporter
ATPase_2	PF01637.18	gi|336251468|ref|YP_004586071.1|	-	0.011	15.7	0.0	0.15	11.9	0.0	2.6	3	0	0	3	3	3	0	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|336251468|ref|YP_004586071.1|	-	0.012	15.4	0.0	0.02	14.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|336251468|ref|YP_004586071.1|	-	0.012	16.0	0.0	0.042	14.2	0.0	1.9	2	0	0	2	2	2	0	RNA	helicase
AAA_33	PF13671.6	gi|336251468|ref|YP_004586071.1|	-	0.014	15.6	0.0	0.057	13.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|336251468|ref|YP_004586071.1|	-	0.11	12.2	0.0	0.35	10.6	0.0	1.8	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Myosin_head	PF00063.21	gi|336251468|ref|YP_004586071.1|	-	0.15	10.2	0.0	0.21	9.8	0.0	1.2	1	0	0	1	1	1	0	Myosin	head	(motor	domain)
DUF4096	PF13340.6	gi|336251469|ref|YP_004586072.1|	-	0.058	13.6	0.0	0.084	13.1	0.0	1.4	1	0	0	1	1	1	0	Putative	transposase	of	IS4/5	family	(DUF4096)
Sirohm_synth_C	PF14823.6	gi|336251469|ref|YP_004586072.1|	-	0.1	12.3	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	Sirohaem	biosynthesis	protein	C-terminal
HTH_20	PF12840.7	gi|336251471|ref|YP_004586074.1|	-	6.3e-05	23.0	0.2	0.00013	21.9	0.0	1.8	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251471|ref|YP_004586074.1|	-	0.003	17.1	0.0	0.13	11.9	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|336251471|ref|YP_004586074.1|	-	0.0066	16.9	0.0	0.014	15.8	0.0	1.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|336251471|ref|YP_004586074.1|	-	0.0072	16.2	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251471|ref|YP_004586074.1|	-	0.018	15.0	0.0	0.028	14.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.6	gi|336251471|ref|YP_004586074.1|	-	0.021	14.8	0.0	0.034	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
Replic_Relax	PF13814.6	gi|336251471|ref|YP_004586074.1|	-	0.031	14.4	0.0	0.037	14.1	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_AsnC-type	PF13404.6	gi|336251471|ref|YP_004586074.1|	-	0.063	13.1	0.5	0.46	10.4	0.1	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
hnRNP_Q_AcD	PF18360.1	gi|336251471|ref|YP_004586074.1|	-	0.098	12.6	0.0	3.3	7.8	0.0	2.2	2	0	0	2	2	2	0	Heterogeneous	nuclear	ribonucleoprotein	Q	acidic	domain
TilS_C	PF11734.8	gi|336251471|ref|YP_004586074.1|	-	0.12	11.8	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	TilS	substrate	C-terminal	domain
DUF4988	PF16378.5	gi|336251473|ref|YP_004586076.1|	-	0.016	14.9	1.9	0.016	14.9	0.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function
DUF4686	PF15742.5	gi|336251473|ref|YP_004586076.1|	-	0.037	13.2	0.3	0.049	12.8	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4686)
Syntaxin	PF00804.25	gi|336251473|ref|YP_004586076.1|	-	0.041	13.5	1.1	2.7	7.6	0.7	2.4	2	0	0	2	2	2	0	Syntaxin
BLOC1_2	PF10046.9	gi|336251473|ref|YP_004586076.1|	-	0.073	13.4	2.3	0.27	11.6	1.1	2.4	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Phage_GP20	PF06810.11	gi|336251473|ref|YP_004586076.1|	-	0.12	12.1	1.5	0.24	11.2	1.1	1.7	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
FlaC_arch	PF05377.11	gi|336251473|ref|YP_004586076.1|	-	0.13	12.7	1.0	2.1	8.8	0.1	2.8	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DivIVA	PF05103.13	gi|336251473|ref|YP_004586076.1|	-	0.57	10.3	3.3	0.32	11.1	1.1	1.7	2	0	0	2	2	2	0	DivIVA	protein
XhlA	PF10779.9	gi|336251473|ref|YP_004586076.1|	-	0.63	10.3	2.9	3.6	7.8	2.9	2.2	1	1	0	1	1	1	0	Haemolysin	XhlA
HSBP1	PF06825.12	gi|336251473|ref|YP_004586076.1|	-	0.72	9.7	4.4	0.16	11.9	0.8	1.8	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
MCM	PF00493.23	gi|336251474|ref|YP_004586077.1|	-	1.7e-78	262.8	0.0	2.5e-78	262.3	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_lid	PF17855.1	gi|336251474|ref|YP_004586077.1|	-	1e-24	86.7	1.5	1.9e-24	85.9	1.5	1.5	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_OB	PF17207.3	gi|336251474|ref|YP_004586077.1|	-	1.5e-19	70.0	0.1	2.9e-19	69.2	0.1	1.3	1	0	0	1	1	1	1	MCM	OB	domain
MCM_N	PF14551.6	gi|336251474|ref|YP_004586077.1|	-	4.7e-10	40.0	3.8	8e-10	39.2	1.0	2.6	2	1	1	3	3	3	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.21	gi|336251474|ref|YP_004586077.1|	-	0.00028	20.3	0.0	0.002	17.5	0.0	2.0	1	1	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
HTH_IclR	PF09339.10	gi|336251475|ref|YP_004586078.1|	-	1.3e-06	28.1	0.0	1.4e-05	24.7	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336251475|ref|YP_004586078.1|	-	3.9e-05	23.6	0.0	5.5e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336251475|ref|YP_004586078.1|	-	6.3e-05	22.8	0.0	7.2e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336251475|ref|YP_004586078.1|	-	0.00057	19.7	0.0	0.00092	19.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_28	PF13518.6	gi|336251475|ref|YP_004586078.1|	-	0.00066	19.8	0.0	0.0009	19.3	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|336251475|ref|YP_004586078.1|	-	0.0027	17.5	0.0	0.0042	16.9	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|336251475|ref|YP_004586078.1|	-	0.009	15.9	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_CodY	PF08222.11	gi|336251475|ref|YP_004586078.1|	-	0.011	15.3	0.0	0.02	14.5	0.0	1.4	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251475|ref|YP_004586078.1|	-	0.012	15.2	0.0	0.017	14.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_30	PF13556.6	gi|336251475|ref|YP_004586078.1|	-	0.023	14.5	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|336251475|ref|YP_004586078.1|	-	0.025	14.4	0.0	0.034	13.9	0.0	1.2	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_29	PF13551.6	gi|336251475|ref|YP_004586078.1|	-	0.03	14.3	0.0	0.055	13.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Crp	PF00325.20	gi|336251475|ref|YP_004586078.1|	-	0.034	13.8	0.5	0.088	12.5	0.5	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_23	PF13384.6	gi|336251475|ref|YP_004586078.1|	-	0.036	13.9	0.1	0.052	13.4	0.1	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.19	gi|336251475|ref|YP_004586078.1|	-	0.095	12.9	0.0	0.14	12.4	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PadR	PF03551.14	gi|336251475|ref|YP_004586078.1|	-	0.15	12.1	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_11	PF08279.12	gi|336251475|ref|YP_004586078.1|	-	0.17	11.9	0.0	0.25	11.3	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
DUF2387	PF09526.10	gi|336251476|ref|YP_004586079.1|	-	0.0052	16.9	0.2	0.0089	16.2	0.2	1.4	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Nudix_N_2	PF14803.6	gi|336251476|ref|YP_004586079.1|	-	0.011	15.6	1.7	0.029	14.3	1.2	2.0	1	1	1	2	2	2	0	Nudix	N-terminal
DZR	PF12773.7	gi|336251476|ref|YP_004586079.1|	-	0.032	14.3	0.5	0.062	13.3	0.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Cys_rich_CPXG	PF14255.6	gi|336251476|ref|YP_004586079.1|	-	0.07	13.0	0.2	0.12	12.3	0.2	1.4	1	0	0	1	1	1	0	Cysteine-rich	CPXCG
Lar_restr_allev	PF14354.6	gi|336251476|ref|YP_004586079.1|	-	0.072	13.5	0.2	0.39	11.1	0.2	2.0	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|336251476|ref|YP_004586079.1|	-	0.25	11.5	1.4	1.8	8.8	0.2	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|336251476|ref|YP_004586079.1|	-	0.42	10.5	2.4	4.2	7.3	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
TF_Zn_Ribbon	PF08271.12	gi|336251477|ref|YP_004586080.1|	-	0.0062	16.0	1.8	0.0062	16.0	1.8	4.3	3	1	1	4	4	4	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|336251477|ref|YP_004586080.1|	-	0.0088	16.1	8.9	2.4	8.2	0.3	3.5	3	0	0	3	3	3	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|336251477|ref|YP_004586080.1|	-	0.01	15.9	13.5	0.29	11.3	0.4	4.5	4	0	0	4	4	4	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|336251477|ref|YP_004586080.1|	-	0.039	14.0	15.0	5.4	7.1	0.2	3.8	3	1	1	4	4	4	0	Double	zinc	ribbon
Ribosomal_L37ae	PF01780.19	gi|336251477|ref|YP_004586080.1|	-	0.14	12.3	2.4	0.16	12.1	0.1	2.3	2	0	0	2	2	1	0	Ribosomal	L37ae	protein	family
zf-RRN7	PF11781.8	gi|336251477|ref|YP_004586080.1|	-	0.25	11.0	11.9	0.33	10.7	2.3	3.3	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-ribbon_3	PF13248.6	gi|336251477|ref|YP_004586080.1|	-	0.32	10.5	5.7	45	3.6	0.4	4.1	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF2072	PF09845.9	gi|336251477|ref|YP_004586080.1|	-	0.44	10.8	9.7	4.2	7.6	0.1	3.5	3	1	0	3	3	3	0	Zn-ribbon	containing	protein
Cys_rich_CPCC	PF14206.6	gi|336251477|ref|YP_004586080.1|	-	0.91	9.4	8.8	0.096	12.5	2.6	2.3	2	0	0	2	2	2	0	Cysteine-rich	CPCC
OrfB_Zn_ribbon	PF07282.11	gi|336251477|ref|YP_004586080.1|	-	1.1	9.3	12.7	9.8	6.2	0.5	4.3	2	1	2	4	4	4	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|336251477|ref|YP_004586080.1|	-	3.1	7.8	11.9	13	5.9	6.6	3.2	2	1	0	2	2	2	0	zinc-ribbons
DUF4379	PF14311.6	gi|336251477|ref|YP_004586080.1|	-	6.7	7.2	7.8	1.4	9.3	0.4	3.0	2	1	0	2	2	2	0	Probable	Zinc-ribbon	domain
DNA_methylase	PF00145.17	gi|336251478|ref|YP_004586081.1|	-	4e-36	125.0	0.0	6.2e-23	81.7	0.0	2.8	2	1	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
TrmB	PF01978.19	gi|336251479|ref|YP_004586082.1|	-	7.8e-06	25.7	0.0	1e-05	25.3	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336251479|ref|YP_004586082.1|	-	1.5e-05	24.7	0.0	2.1e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251479|ref|YP_004586082.1|	-	0.0001	22.2	0.0	0.00014	21.7	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|336251479|ref|YP_004586082.1|	-	0.00068	19.7	0.1	0.00097	19.2	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251479|ref|YP_004586082.1|	-	0.0012	18.7	0.1	0.0016	18.3	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_29	PF13551.6	gi|336251479|ref|YP_004586082.1|	-	0.019	15.0	0.0	0.03	14.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|336251479|ref|YP_004586082.1|	-	0.044	13.8	0.0	0.057	13.4	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251479|ref|YP_004586082.1|	-	0.062	12.9	0.0	0.084	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|336251479|ref|YP_004586082.1|	-	0.12	12.7	0.0	0.17	12.2	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
FUR	PF01475.19	gi|336251480|ref|YP_004586083.1|	-	0.0087	16.2	0.0	0.0093	16.1	0.0	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
Terminase_GpA	PF05876.12	gi|336251480|ref|YP_004586083.1|	-	0.1	11.1	1.2	0.11	11.0	1.2	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
GST_C_2	PF13410.6	gi|336251483|ref|YP_004586086.1|	-	0.054	13.5	0.4	5.6	7.1	0.0	2.3	2	0	0	2	2	2	0	Glutathione	S-transferase,	C-terminal	domain
DUF87	PF01935.17	gi|336251484|ref|YP_004586087.1|	-	1.3e-10	41.7	3.2	2e-10	41.2	0.0	2.6	3	0	0	3	3	3	1	Helicase	HerA,	central	domain
ABC_tran_CTD	PF16326.5	gi|336251484|ref|YP_004586087.1|	-	4e-06	27.0	25.0	0.00033	20.9	2.3	4.4	4	0	0	4	4	4	2	ABC	transporter	C-terminal	domain
FPP	PF05911.11	gi|336251484|ref|YP_004586087.1|	-	1.5e-05	23.5	1.9	1.9e-05	23.1	1.9	1.1	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
Phage_GP20	PF06810.11	gi|336251484|ref|YP_004586087.1|	-	0.00057	19.7	12.7	0.099	12.4	0.6	4.2	3	1	1	4	4	4	1	Phage	minor	structural	protein	GP20
AAA_16	PF13191.6	gi|336251484|ref|YP_004586087.1|	-	0.00068	20.1	0.0	0.00068	20.1	0.0	2.8	2	1	0	2	2	1	1	AAA	ATPase	domain
TMF_DNA_bd	PF12329.8	gi|336251484|ref|YP_004586087.1|	-	0.00074	19.5	12.4	0.073	13.1	3.6	2.7	2	0	0	2	2	2	2	TATA	element	modulatory	factor	1	DNA	binding
DUF812	PF05667.11	gi|336251484|ref|YP_004586087.1|	-	0.001	18.1	5.4	0.0018	17.3	5.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
LexA_DNA_bind	PF01726.16	gi|336251484|ref|YP_004586087.1|	-	0.0016	18.2	0.0	0.0039	16.9	0.0	1.6	1	0	0	1	1	1	1	LexA	DNA	binding	domain
TrwB_AAD_bind	PF10412.9	gi|336251484|ref|YP_004586087.1|	-	0.0017	17.3	0.0	0.0036	16.3	0.0	1.4	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CbiA	PF01656.23	gi|336251484|ref|YP_004586087.1|	-	0.0018	18.3	0.0	0.0037	17.3	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
APS_kinase	PF01583.20	gi|336251484|ref|YP_004586087.1|	-	0.002	18.0	0.2	0.0064	16.4	0.0	1.9	2	0	0	2	2	1	1	Adenylylsulphate	kinase
Fib_alpha	PF08702.10	gi|336251484|ref|YP_004586087.1|	-	0.0021	18.2	2.2	0.0054	16.9	2.1	1.7	1	1	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
MAD	PF05557.13	gi|336251484|ref|YP_004586087.1|	-	0.0026	16.2	13.9	0.0043	15.5	13.9	1.2	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
CCDC144C	PF14915.6	gi|336251484|ref|YP_004586087.1|	-	0.005	16.0	2.0	0.005	16.0	2.0	2.3	2	0	0	2	2	2	1	CCDC144C	protein	coiled-coil	region
CENP-F_leu_zip	PF10473.9	gi|336251484|ref|YP_004586087.1|	-	0.0082	16.2	22.9	0.3	11.1	7.7	3.0	2	1	0	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
YscO-like	PF16789.5	gi|336251484|ref|YP_004586087.1|	-	0.0097	16.0	1.4	0.0097	16.0	1.4	2.8	2	1	1	3	3	2	1	YscO-like	protein
FapA	PF03961.13	gi|336251484|ref|YP_004586087.1|	-	0.01	14.5	3.1	0.017	13.8	3.1	1.4	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Exonuc_VII_L	PF02601.15	gi|336251484|ref|YP_004586087.1|	-	0.012	15.2	3.1	0.019	14.6	3.1	1.4	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
FTA4	PF13093.6	gi|336251484|ref|YP_004586087.1|	-	0.015	15.2	5.8	0.018	15.0	4.8	1.7	1	1	0	1	1	1	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DUF853	PF05872.12	gi|336251484|ref|YP_004586087.1|	-	0.018	13.7	6.4	0.089	11.4	0.1	3.0	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
Macoilin	PF09726.9	gi|336251484|ref|YP_004586087.1|	-	0.033	12.8	11.5	0.046	12.3	11.5	1.1	1	0	0	1	1	1	0	Macoilin	family
Csm1_N	PF18504.1	gi|336251484|ref|YP_004586087.1|	-	0.034	14.5	13.7	0.13	12.6	1.0	3.4	3	0	0	3	3	2	0	Csm1	N-terminal	domain
AAA_10	PF12846.7	gi|336251484|ref|YP_004586087.1|	-	0.039	12.9	0.3	0.24	10.3	0.0	2.4	3	0	0	3	3	3	0	AAA-like	domain
DUF4795	PF16043.5	gi|336251484|ref|YP_004586087.1|	-	0.04	13.5	8.9	0.67	9.5	0.6	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
AAA_22	PF13401.6	gi|336251484|ref|YP_004586087.1|	-	0.056	13.7	3.7	0.4	11.0	0.0	3.0	3	1	0	3	3	2	0	AAA	domain
Uds1	PF15456.6	gi|336251484|ref|YP_004586087.1|	-	0.056	13.6	9.1	0.2	11.8	8.6	2.1	2	0	0	2	2	1	0	Up-regulated	During	Septation
DUF16	PF01519.16	gi|336251484|ref|YP_004586087.1|	-	0.071	13.6	3.8	1.7	9.1	1.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
DUF4094	PF13334.6	gi|336251484|ref|YP_004586087.1|	-	0.086	13.3	1.8	14	6.2	0.3	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4094)
NPV_P10	PF05531.12	gi|336251484|ref|YP_004586087.1|	-	0.1	13.1	3.1	12	6.5	0.7	2.8	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
AAA	PF00004.29	gi|336251484|ref|YP_004586087.1|	-	0.11	12.9	0.5	1.2	9.5	0.0	2.7	2	1	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FlaC_arch	PF05377.11	gi|336251484|ref|YP_004586087.1|	-	0.11	12.9	9.2	1.1	9.7	1.9	2.9	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DASH_Spc19	PF08287.11	gi|336251484|ref|YP_004586087.1|	-	0.12	12.3	14.7	0.028	14.3	9.2	2.3	1	1	1	2	2	2	0	Spc19
DUF1151	PF06625.11	gi|336251484|ref|YP_004586087.1|	-	0.13	12.2	17.2	0.037	14.0	5.3	2.7	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1151)
AAA_33	PF13671.6	gi|336251484|ref|YP_004586087.1|	-	0.14	12.4	0.6	0.56	10.4	0.0	2.3	2	1	0	2	2	1	0	AAA	domain
DUF4201	PF13870.6	gi|336251484|ref|YP_004586087.1|	-	0.14	11.8	9.5	2.1	8.1	1.9	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4201)
Cep57_CLD	PF14073.6	gi|336251484|ref|YP_004586087.1|	-	0.14	12.1	15.3	0.19	11.7	13.9	1.9	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	Cep57
Mei5	PF10376.9	gi|336251484|ref|YP_004586087.1|	-	0.15	11.9	6.6	0.26	11.1	6.6	1.3	1	0	0	1	1	1	0	Double-strand	recombination	repair	protein
DUF2408	PF10303.9	gi|336251484|ref|YP_004586087.1|	-	0.17	12.4	4.3	0.43	11.1	4.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
HOOK	PF05622.12	gi|336251484|ref|YP_004586087.1|	-	0.2	9.8	15.8	0.049	11.8	12.2	1.8	2	0	0	2	2	2	0	HOOK	protein
P4Ha_N	PF08336.11	gi|336251484|ref|YP_004586087.1|	-	0.26	11.3	5.5	3.5	7.6	0.1	2.7	2	0	0	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
Rootletin	PF15035.6	gi|336251484|ref|YP_004586087.1|	-	0.27	11.2	11.3	0.53	10.3	11.3	1.5	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
ATG16	PF08614.11	gi|336251484|ref|YP_004586087.1|	-	0.3	11.3	19.6	0.31	11.2	3.8	2.5	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
DUF2802	PF10975.8	gi|336251484|ref|YP_004586087.1|	-	0.31	11.2	6.8	4.7	7.4	2.7	3.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2802)
DivIC	PF04977.15	gi|336251484|ref|YP_004586087.1|	-	0.32	10.8	18.1	0.36	10.6	0.8	3.6	3	0	0	3	3	3	0	Septum	formation	initiator
ATPase	PF06745.13	gi|336251484|ref|YP_004586087.1|	-	0.32	10.3	1.4	0.57	9.5	0.0	2.1	3	0	0	3	3	1	0	KaiC
TMPIT	PF07851.13	gi|336251484|ref|YP_004586087.1|	-	0.37	10.0	2.5	8.7	5.5	0.8	2.1	2	0	0	2	2	2	0	TMPIT-like	protein
DUF241	PF03087.14	gi|336251484|ref|YP_004586087.1|	-	0.43	10.4	5.1	0.59	9.9	0.9	2.2	2	0	0	2	2	2	0	Arabidopsis	protein	of	unknown	function
AAA_13	PF13166.6	gi|336251484|ref|YP_004586087.1|	-	0.46	9.1	10.6	1.2	7.7	3.3	2.1	1	1	0	2	2	2	0	AAA	domain
Prefoldin_2	PF01920.20	gi|336251484|ref|YP_004586087.1|	-	0.46	10.5	14.4	1.8	8.6	0.6	3.0	3	0	0	3	3	2	0	Prefoldin	subunit
DUF2730	PF10805.8	gi|336251484|ref|YP_004586087.1|	-	0.51	10.5	4.2	4.9	7.3	0.5	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
DUF4349	PF14257.6	gi|336251484|ref|YP_004586087.1|	-	0.53	9.7	15.7	0.54	9.7	1.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
Med4	PF10018.9	gi|336251484|ref|YP_004586087.1|	-	0.61	9.7	13.4	4.9	6.8	6.2	2.6	1	1	1	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Spc42p	PF11544.8	gi|336251484|ref|YP_004586087.1|	-	0.63	10.1	4.4	1.4	8.9	0.2	2.5	2	0	0	2	2	2	0	Spindle	pole	body	component	Spc42p
HR1	PF02185.16	gi|336251484|ref|YP_004586087.1|	-	0.73	10.0	14.4	0.45	10.6	5.2	2.8	2	0	0	2	2	2	0	Hr1	repeat
XhlA	PF10779.9	gi|336251484|ref|YP_004586087.1|	-	0.99	9.7	15.2	0.32	11.2	3.7	3.5	3	0	0	3	3	3	0	Haemolysin	XhlA
AAA_29	PF13555.6	gi|336251484|ref|YP_004586087.1|	-	1.1	9.0	3.6	0.27	11.0	0.2	1.7	2	0	0	2	2	1	0	P-loop	containing	region	of	AAA	domain
CENP-H	PF05837.12	gi|336251484|ref|YP_004586087.1|	-	1.3	9.5	9.3	1.2	9.6	1.8	2.6	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
Spc7	PF08317.11	gi|336251484|ref|YP_004586087.1|	-	1.6	7.5	18.4	1.2	8.0	7.7	2.0	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Phage_tail_NK	PF16532.5	gi|336251484|ref|YP_004586087.1|	-	1.6	8.3	3.0	23	4.5	0.1	2.2	2	0	0	2	2	2	0	Sf6-type	phage	tail	needle	knob	or	tip	of	some	Caudovirales
Seryl_tRNA_N	PF02403.22	gi|336251484|ref|YP_004586087.1|	-	1.7	8.9	13.7	0.56	10.5	9.4	2.4	2	0	0	2	2	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4407	PF14362.6	gi|336251484|ref|YP_004586087.1|	-	2	7.7	16.5	8.9	5.6	16.5	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Ead_Ea22	PF13935.6	gi|336251484|ref|YP_004586087.1|	-	2.4	8.8	13.7	0.42	11.3	6.8	2.6	1	1	1	2	2	2	0	Ead/Ea22-like	protein
Phage_HK97_TLTM	PF06120.11	gi|336251484|ref|YP_004586087.1|	-	2.5	7.2	8.2	3.1	6.9	0.5	2.3	2	0	0	2	2	2	0	Tail	length	tape	measure	protein
OmpH	PF03938.14	gi|336251484|ref|YP_004586087.1|	-	2.6	8.4	18.3	13	6.2	6.1	3.2	3	1	0	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Troponin	PF00992.20	gi|336251484|ref|YP_004586087.1|	-	2.8	8.3	17.9	0.66	10.3	0.9	2.9	3	0	0	3	3	2	0	Troponin
Com_YlbF	PF06133.11	gi|336251484|ref|YP_004586087.1|	-	3.2	8.4	12.7	2.2	8.9	0.3	2.8	2	0	0	2	2	2	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
Spc24	PF08286.11	gi|336251484|ref|YP_004586087.1|	-	3.3	8.0	10.7	5.3	7.3	1.1	2.8	3	0	0	3	3	2	0	Spc24	subunit	of	Ndc80
DivIVA	PF05103.13	gi|336251484|ref|YP_004586087.1|	-	3.9	7.6	13.9	1.5	8.9	3.2	2.6	2	1	0	2	2	2	0	DivIVA	protein
Fez1	PF06818.15	gi|336251484|ref|YP_004586087.1|	-	4.5	7.7	15.3	12	6.2	15.3	1.7	1	1	0	1	1	1	0	Fez1
Tropomyosin_1	PF12718.7	gi|336251484|ref|YP_004586087.1|	-	4.6	7.4	24.1	4.9	7.3	6.9	3.4	2	1	0	2	2	2	0	Tropomyosin	like
UPF0242	PF06785.11	gi|336251484|ref|YP_004586087.1|	-	4.7	7.3	20.1	0.94	9.6	2.7	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
BRE1	PF08647.11	gi|336251484|ref|YP_004586087.1|	-	5.3	7.2	10.9	6.8	6.8	0.3	2.6	2	0	0	2	2	2	0	BRE1	E3	ubiquitin	ligase
PilO	PF04350.13	gi|336251484|ref|YP_004586087.1|	-	5.4	7.2	7.5	28	4.9	3.1	3.0	2	1	1	3	3	3	0	Pilus	assembly	protein,	PilO
BST2	PF16716.5	gi|336251484|ref|YP_004586087.1|	-	5.8	7.6	13.3	1.8	9.2	4.7	2.9	2	1	1	3	3	2	0	Bone	marrow	stromal	antigen	2
NuA4	PF09340.10	gi|336251484|ref|YP_004586087.1|	-	5.8	6.9	5.5	10	6.1	1.0	2.6	2	0	0	2	2	2	0	Histone	acetyltransferase	subunit	NuA4
Taxilin	PF09728.9	gi|336251484|ref|YP_004586087.1|	-	6.3	5.9	14.3	0.28	10.3	0.7	2.4	1	1	1	3	3	3	0	Myosin-like	coiled-coil	protein
Cob_adeno_trans	PF01923.18	gi|336251484|ref|YP_004586087.1|	-	7.5	6.7	7.9	4.8	7.3	1.7	2.5	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
Swi5	PF07061.11	gi|336251484|ref|YP_004586087.1|	-	7.7	6.7	8.2	13	5.9	1.2	3.1	3	0	0	3	3	2	0	Swi5
BLOC1_2	PF10046.9	gi|336251484|ref|YP_004586087.1|	-	8.6	6.7	9.5	6.6	7.1	0.3	2.8	3	0	0	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF3510	PF12022.8	gi|336251485|ref|YP_004586088.1|	-	0.014	15.8	0.0	0.049	14.0	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3510)
PadR	PF03551.14	gi|336251486|ref|YP_004586089.1|	-	2.1e-13	50.0	0.1	2.6e-13	49.7	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336251486|ref|YP_004586089.1|	-	0.00056	19.8	0.0	0.00076	19.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|336251486|ref|YP_004586089.1|	-	0.05	13.4	0.0	0.07	13.0	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|336251486|ref|YP_004586089.1|	-	0.19	11.5	0.0	0.24	11.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
YajC	PF02699.15	gi|336251488|ref|YP_004586091.1|	-	0.027	14.4	0.0	0.042	13.7	0.0	1.3	1	0	0	1	1	1	0	Preprotein	translocase	subunit
HHH_5	PF14520.6	gi|336251489|ref|YP_004586092.1|	-	0.0077	16.8	0.0	0.11	13.1	0.0	2.3	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
Lar_restr_allev	PF14354.6	gi|336251494|ref|YP_004586097.1|	-	0.0091	16.4	1.5	0.0091	16.4	1.5	1.5	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
IBR	PF01485.21	gi|336251494|ref|YP_004586097.1|	-	0.0092	16.2	0.2	0.013	15.7	0.2	1.2	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
Cys_rich_CPXG	PF14255.6	gi|336251494|ref|YP_004586097.1|	-	0.012	15.5	0.1	0.58	10.1	0.0	2.4	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
zf-TFIIB	PF13453.6	gi|336251494|ref|YP_004586097.1|	-	0.015	14.6	3.6	0.028	13.7	3.6	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zinc_ribbon_2	PF13240.6	gi|336251494|ref|YP_004586097.1|	-	0.033	13.9	2.4	0.13	12.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Ogr_Delta	PF04606.12	gi|336251494|ref|YP_004586097.1|	-	0.31	11.0	2.0	10	6.2	0.2	2.6	2	1	1	3	3	3	0	Ogr/Delta-like	zinc	finger
zf-C4_Topoisom	PF01396.19	gi|336251494|ref|YP_004586097.1|	-	0.48	10.3	5.0	0.91	9.4	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.10	gi|336251494|ref|YP_004586097.1|	-	1.7	8.8	6.6	51	4.1	6.6	2.3	1	1	0	1	1	1	0	Zinc	ribbon	domain
Ammonium_transp	PF00909.21	gi|336251496|ref|YP_004586099.1|	-	0.022	13.5	0.2	0.027	13.2	0.2	1.1	1	0	0	1	1	1	0	Ammonium	Transporter	Family
AAA_31	PF13614.6	gi|336251498|ref|YP_004586101.1|	-	4.8e-21	75.4	0.0	6e-21	75.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|336251498|ref|YP_004586101.1|	-	3.6e-11	43.2	0.0	4.4e-11	42.9	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|336251498|ref|YP_004586101.1|	-	1.1e-06	28.2	0.6	0.018	14.3	0.1	2.2	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|336251498|ref|YP_004586101.1|	-	0.00012	21.7	0.1	0.0007	19.1	0.1	1.9	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|336251498|ref|YP_004586101.1|	-	0.00057	19.2	0.8	0.0018	17.5	0.7	1.9	1	1	0	1	1	1	1	Anion-transporting	ATPase
ParA	PF10609.9	gi|336251498|ref|YP_004586101.1|	-	0.003	17.0	0.0	0.0059	16.1	0.0	1.4	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
SRP54	PF00448.22	gi|336251498|ref|YP_004586101.1|	-	0.12	12.0	0.1	0.43	10.2	0.1	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
5TM-5TMR_LYT	PF07694.12	gi|336251503|ref|YP_004586106.1|	-	0.015	14.8	2.0	0.017	14.6	2.0	1.1	1	0	0	1	1	1	0	5TMR	of	5TMR-LYT
RHH_1	PF01402.21	gi|336251505|ref|YP_004586108.1|	-	6e-10	38.7	0.2	8e-10	38.3	0.2	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|336251505|ref|YP_004586108.1|	-	0.00012	22.3	0.0	0.00013	22.1	0.0	1.1	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
ParD_antitoxin	PF03693.14	gi|336251505|ref|YP_004586108.1|	-	0.016	15.6	0.1	0.02	15.3	0.1	1.2	1	0	0	1	1	1	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
VapB_antitoxin	PF09957.9	gi|336251505|ref|YP_004586108.1|	-	0.067	13.1	0.0	0.097	12.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
Lentiviral_Tat	PF02998.14	gi|336251505|ref|YP_004586108.1|	-	0.14	12.2	0.0	0.16	12.1	0.0	1.1	1	0	0	1	1	1	0	Lentiviral	Tat	protein
DZR	PF12773.7	gi|336251508|ref|YP_004586111.1|	-	0.0043	17.0	0.5	0.0058	16.6	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
VATC	PF18716.1	gi|336251508|ref|YP_004586111.1|	-	0.047	13.6	2.1	0.083	12.8	1.8	1.6	1	1	1	2	2	2	0	Vms1-associating	treble	clef	domain
NTP_transf_2	PF01909.23	gi|336251511|ref|YP_004586114.1|	-	0.00014	22.1	0.0	0.00019	21.6	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|336251511|ref|YP_004586114.1|	-	0.00016	21.7	0.0	0.00025	21.1	0.0	1.3	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
RNase_H_2	PF13482.6	gi|336251514|ref|YP_004586117.1|	-	3.3e-09	37.0	0.0	4.7e-09	36.4	0.0	1.4	1	1	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_exo1	PF03104.19	gi|336251514|ref|YP_004586117.1|	-	1.3e-05	24.5	0.0	5.3e-05	22.5	0.0	1.8	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_exo2	PF10108.9	gi|336251514|ref|YP_004586117.1|	-	0.0033	17.2	0.0	0.0041	16.8	0.0	1.2	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DUF2093	PF09866.9	gi|336251515|ref|YP_004586118.1|	-	0.019	14.4	0.0	0.029	13.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2093)
SMC_Nse1	PF07574.13	gi|336251516|ref|YP_004586119.1|	-	0.013	15.4	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
ANAPC2	PF08672.11	gi|336251516|ref|YP_004586119.1|	-	0.042	14.4	0.1	0.066	13.7	0.1	1.3	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
HARE-HTH	PF05066.13	gi|336251520|ref|YP_004586123.1|	-	0.0086	16.4	0.1	0.24	11.8	0.0	2.9	3	1	0	3	3	3	1	HB1,	ASXL,	restriction	endonuclease	HTH	domain
Ctr	PF04145.15	gi|336251520|ref|YP_004586123.1|	-	0.018	15.7	0.0	0.034	14.8	0.0	1.3	1	1	0	1	1	1	0	Ctr	copper	transporter	family
DUF1643	PF07799.12	gi|336251522|ref|YP_004586125.1|	-	5.4e-47	159.4	0.0	6.4e-47	159.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1643)
DUF4326	PF14216.6	gi|336251523|ref|YP_004586126.1|	-	1.6e-16	60.8	0.4	6.1e-16	58.9	0.4	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4326)
PDDEXK_1	PF12705.7	gi|336251526|ref|YP_004586129.1|	-	1.7e-07	31.5	0.1	8.9e-05	22.5	0.0	2.1	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Host_attach	PF10116.9	gi|336251528|ref|YP_004586131.1|	-	0.0018	18.8	0.0	0.0024	18.5	0.0	1.1	1	0	0	1	1	1	1	Protein	required	for	attachment	to	host	cells
baeRF_family10	PF18854.1	gi|336251528|ref|YP_004586131.1|	-	0.005	17.1	0.0	0.0069	16.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
baeRF_family12	PF18856.1	gi|336251528|ref|YP_004586131.1|	-	0.087	13.4	0.0	0.11	13.1	0.0	1.2	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	12
baeRF_family5	PF18846.1	gi|336251528|ref|YP_004586131.1|	-	0.099	12.8	0.0	0.14	12.3	0.0	1.2	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	5
Met_10	PF02475.16	gi|336251532|ref|YP_004586135.1|	-	0.029	14.1	0.0	0.046	13.5	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Ubie_methyltran	PF01209.18	gi|336251532|ref|YP_004586135.1|	-	0.033	13.5	0.0	0.39	10.0	0.0	2.0	2	0	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.6	gi|336251532|ref|YP_004586135.1|	-	0.043	14.5	0.0	8.7	7.1	0.0	2.5	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336251532|ref|YP_004586135.1|	-	0.052	14.2	0.0	1.5	9.5	0.0	2.3	2	0	0	2	2	2	0	Methyltransferase	domain
N6_N4_Mtase	PF01555.18	gi|336251532|ref|YP_004586135.1|	-	0.17	11.5	0.0	1.2	8.7	0.0	1.9	1	1	0	2	2	2	0	DNA	methylase
DUF202	PF02656.15	gi|336251533|ref|YP_004586136.1|	-	0.058	13.9	3.0	0.071	13.6	3.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Phage_integrase	PF00589.22	gi|336251535|ref|YP_004586138.1|	-	4.2e-09	36.4	0.0	6.8e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|336251535|ref|YP_004586138.1|	-	0.058	13.7	1.3	2.7	8.4	0.4	3.0	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
CoA_binding_3	PF13727.6	gi|336251535|ref|YP_004586138.1|	-	0.19	11.8	0.0	20	5.1	0.0	2.3	2	0	0	2	2	2	0	CoA-binding	domain
SseC	PF04888.12	gi|336251537|ref|YP_004586140.1|	-	0.18	11.4	6.5	0.071	12.7	4.2	1.5	2	0	0	2	2	2	0	Secretion	system	effector	C	(SseC)	like	family
Prenyltrans	PF00432.21	gi|336251537|ref|YP_004586140.1|	-	0.62	9.9	3.6	0.49	10.2	1.1	2.0	2	0	0	2	2	2	0	Prenyltransferase	and	squalene	oxidase	repeat
OppC_N	PF12911.7	gi|336251537|ref|YP_004586140.1|	-	0.73	9.9	6.8	2.4	8.2	6.8	1.9	1	1	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
HHH_5	PF14520.6	gi|336251538|ref|YP_004586141.1|	-	1.3e-10	41.7	0.1	2.9e-10	40.6	0.0	1.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|336251538|ref|YP_004586141.1|	-	1.3e-08	34.8	0.0	2.1e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|336251538|ref|YP_004586141.1|	-	0.0001	21.9	0.1	0.0034	17.2	0.0	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
GvpG	PF05120.12	gi|336251538|ref|YP_004586141.1|	-	0.00019	21.3	1.1	0.00053	19.9	0.3	1.9	1	1	1	2	2	2	1	Gas	vesicle	protein	G
SHOCT	PF09851.9	gi|336251538|ref|YP_004586141.1|	-	0.004	16.8	1.1	0.004	16.8	1.1	1.9	2	0	0	2	2	2	1	Short	C-terminal	domain
5_3_exonuc	PF01367.20	gi|336251538|ref|YP_004586141.1|	-	0.034	14.7	0.0	1.6	9.4	0.0	2.3	1	1	1	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF1707	PF08044.11	gi|336251538|ref|YP_004586141.1|	-	0.053	13.6	0.4	0.053	13.6	0.4	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1707)
HHH_3	PF12836.7	gi|336251538|ref|YP_004586141.1|	-	0.077	13.3	0.0	0.37	11.1	0.0	2.1	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
MCM_OB	PF17207.3	gi|336251540|ref|YP_004586143.1|	-	1.3e-16	60.6	0.0	2.3e-16	59.8	0.0	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_N	PF14551.6	gi|336251540|ref|YP_004586143.1|	-	0.00073	20.1	0.0	0.0017	18.9	0.0	1.5	1	0	0	1	1	1	1	MCM	N-terminal	domain
SP24	PF16504.5	gi|336251541|ref|YP_004586144.1|	-	0.077	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Putative	virion	membrane	protein	of	plant	and	insect	virus
LapA_dom	PF06305.11	gi|336251542|ref|YP_004586145.1|	-	0.062	13.1	0.5	0.062	13.1	0.5	2.9	3	1	0	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
TssO	PF17561.2	gi|336251543|ref|YP_004586146.1|	-	0.22	11.7	3.3	0.51	10.4	3.3	1.5	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
DUF3180	PF11377.8	gi|336251543|ref|YP_004586146.1|	-	0.31	11.2	2.0	2.9	8.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3180)
DUF4192	PF13830.6	gi|336251544|ref|YP_004586147.1|	-	6	6.8	9.6	0.23	11.5	2.4	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4192)
ERGIC_N	PF13850.6	gi|336251546|ref|YP_004586149.1|	-	6.4	7.2	6.8	35	4.9	1.9	2.9	1	1	1	2	2	2	0	Endoplasmic	Reticulum-Golgi	Intermediate	Compartment	(ERGIC)
Trp_Tyr_perm	PF03222.13	gi|336251547|ref|YP_004586150.1|	-	0.032	13.3	1.5	0.038	13.0	1.5	1.0	1	0	0	1	1	1	0	Tryptophan/tyrosine	permease	family
Wzy_C	PF04932.15	gi|336251547|ref|YP_004586150.1|	-	0.035	13.7	0.2	0.038	13.6	0.2	1.1	1	0	0	1	1	1	0	O-Antigen	ligase
DUF3265	PF11665.8	gi|336251547|ref|YP_004586150.1|	-	0.27	11.5	1.2	0.32	11.2	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3265)
Pap_E4	PF02711.14	gi|336251548|ref|YP_004586151.1|	-	0.0083	17.1	0.3	0.024	15.6	0.2	1.9	2	0	0	2	2	2	1	E4	protein
F5_F8_type_C	PF00754.25	gi|336251548|ref|YP_004586151.1|	-	0.21	11.7	6.0	0.13	12.4	0.5	2.6	1	1	0	2	2	2	0	F5/8	type	C	domain
DUF2244	PF10003.9	gi|336251549|ref|YP_004586152.1|	-	0.021	14.5	0.6	0.036	13.7	0.6	1.3	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
TAT_signal	PF10518.9	gi|336251550|ref|YP_004586153.1|	-	0.026	14.4	0.4	0.026	14.4	0.4	2.4	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336251550|ref|YP_004586153.1|	-	0.15	11.4	0.0	0.15	11.4	0.0	2.0	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
SHNi-TPR	PF10516.9	gi|336251552|ref|YP_004586155.1|	-	0.1	12.1	0.5	0.21	11.1	0.5	1.5	1	0	0	1	1	1	0	SHNi-TPR
CBM60	PF16841.5	gi|336251552|ref|YP_004586155.1|	-	0.17	12.3	4.2	1.9	9.0	0.2	3.6	3	2	0	3	3	3	0	Ca-dependent	carbohydrate-binding	module	xylan-binding
VCBS	PF13517.6	gi|336251553|ref|YP_004586156.1|	-	1.1e-11	45.2	40.9	2.6e-05	24.7	3.8	6.3	2	2	5	7	7	7	4	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|336251553|ref|YP_004586156.1|	-	2.3e-09	37.2	20.2	0.099	12.8	0.2	6.1	6	0	0	6	6	6	4	FG-GAP	repeat
TcdB_toxin_midN	PF12256.8	gi|336251553|ref|YP_004586156.1|	-	0.0017	17.8	13.8	0.93	8.8	0.1	4.7	4	1	1	5	5	5	3	Insecticide	toxin	TcdB	middle/N-terminal	region
PliI	PF16743.5	gi|336251553|ref|YP_004586156.1|	-	0.063	13.0	0.4	5.7	6.7	0.0	3.6	3	1	1	4	4	4	0	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
Dockerin_1	PF00404.18	gi|336251553|ref|YP_004586156.1|	-	1.1	9.5	9.6	27	5.1	0.0	4.8	5	0	0	5	5	5	0	Dockerin	type	I	domain
TAT_signal	PF10518.9	gi|336251556|ref|YP_004586159.1|	-	0.11	12.3	0.2	0.18	11.7	0.2	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1816	PF08846.10	gi|336251556|ref|YP_004586159.1|	-	0.21	11.6	1.0	1.9	8.5	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1816)
Peptidase_S8	PF00082.22	gi|336251557|ref|YP_004586160.1|	-	9.7e-20	71.0	2.3	1.5e-19	70.4	2.3	1.2	1	0	0	1	1	1	1	Subtilase	family
Peripla_BP_4	PF13407.6	gi|336251557|ref|YP_004586160.1|	-	0.0024	17.5	0.7	0.16	11.5	0.2	2.5	3	0	0	3	3	3	2	Periplasmic	binding	protein	domain
CarboxypepD_reg	PF13620.6	gi|336251558|ref|YP_004586161.1|	-	0.00045	20.4	9.8	0.048	13.9	0.5	4.3	4	0	0	4	4	4	2	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|336251558|ref|YP_004586161.1|	-	0.051	13.6	1.2	15	5.7	0.1	3.0	2	0	0	2	2	2	0	CarboxypepD_reg-like	domain
APC_u15	PF16636.5	gi|336252097|ref|YP_004595204.1|	-	0.12	12.9	0.1	0.12	12.8	0.1	1.2	1	0	0	1	1	1	0	Unstructured	region	on	APC	between	APC_crr	regions	5	and	6
MCPsignal	PF00015.21	gi|336252098|ref|YP_004595205.1|	-	1.6e-37	129.0	22.7	1.6e-37	129.0	22.7	4.6	1	1	1	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|336252098|ref|YP_004595205.1|	-	0.00075	19.7	36.1	0.0037	17.5	2.8	5.2	4	1	1	5	5	5	2	Bacterial	protein	of	unknown	function	(DUF948)
AAA_13	PF13166.6	gi|336252098|ref|YP_004595205.1|	-	0.002	16.9	7.7	0.002	16.9	7.7	2.6	1	1	1	2	2	2	2	AAA	domain
UPF0242	PF06785.11	gi|336252098|ref|YP_004595205.1|	-	0.0061	16.7	0.1	0.0061	16.7	0.1	3.7	1	1	1	4	4	4	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF1664	PF07889.12	gi|336252098|ref|YP_004595205.1|	-	0.0063	16.6	24.6	0.26	11.3	2.1	4.7	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
Phage_GP20	PF06810.11	gi|336252098|ref|YP_004595205.1|	-	0.029	14.2	1.1	0.029	14.2	1.1	4.2	2	2	1	4	4	4	0	Phage	minor	structural	protein	GP20
HAMP	PF00672.25	gi|336252098|ref|YP_004595205.1|	-	0.043	14.2	1.5	0.043	14.2	1.5	4.6	5	1	1	6	6	4	0	HAMP	domain
COG2	PF06148.11	gi|336252098|ref|YP_004595205.1|	-	0.077	13.1	0.3	0.077	13.1	0.3	5.1	2	2	3	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Mce4_CUP1	PF11887.8	gi|336252098|ref|YP_004595205.1|	-	0.11	11.9	19.1	0.33	10.4	2.7	3.1	2	1	1	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Laminin_II	PF06009.12	gi|336252098|ref|YP_004595205.1|	-	0.23	11.5	35.6	0.1	12.6	0.8	5.1	3	2	2	5	5	5	0	Laminin	Domain	II
ApoO	PF09769.9	gi|336252098|ref|YP_004595205.1|	-	0.33	10.9	0.1	0.33	10.9	0.1	3.5	3	2	1	4	4	3	0	Apolipoprotein	O
DUF1759	PF03564.15	gi|336252098|ref|YP_004595205.1|	-	0.43	10.5	6.7	13	5.7	0.1	3.8	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF1759)
BLOC1_2	PF10046.9	gi|336252098|ref|YP_004595205.1|	-	0.59	10.5	25.1	9.4	6.6	2.2	5.1	3	2	1	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FlaC_arch	PF05377.11	gi|336252098|ref|YP_004595205.1|	-	0.6	10.5	18.4	12	6.4	0.5	5.9	3	2	2	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Allexi_40kDa	PF05549.11	gi|336252098|ref|YP_004595205.1|	-	0.97	8.9	12.9	0.44	10.0	1.5	2.7	2	2	0	2	2	2	0	Allexivirus	40kDa	protein
Fib_alpha	PF08702.10	gi|336252098|ref|YP_004595205.1|	-	1.8	8.7	14.4	2.3	8.4	2.5	3.9	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
DASH_Duo1	PF08651.10	gi|336252098|ref|YP_004595205.1|	-	2.9	7.7	11.3	0.87	9.4	0.1	4.7	3	2	1	5	5	5	0	DASH	complex	subunit	Duo1
Med9	PF07544.13	gi|336252098|ref|YP_004595205.1|	-	3	8.0	8.4	4.2	7.5	0.1	4.5	3	1	1	4	4	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
BORCS8	PF10167.9	gi|336252098|ref|YP_004595205.1|	-	3.7	7.5	10.5	0.27	11.2	0.3	3.7	4	1	1	5	5	5	0	BLOC-1-related	complex	sub-unit	8
DUF2452	PF10504.9	gi|336252098|ref|YP_004595205.1|	-	3.9	6.9	8.9	2.6	7.5	0.5	3.3	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2452)
Prominin	PF05478.11	gi|336252098|ref|YP_004595205.1|	-	5.1	4.9	12.8	5	5.0	2.0	2.2	1	1	0	2	2	2	0	Prominin
IFT20	PF14931.6	gi|336252098|ref|YP_004595205.1|	-	7.7	6.7	25.4	0.33	11.1	3.9	4.4	3	1	0	4	4	4	0	Intraflagellar	transport	complex	B,	subunit	20
Polyketide_cyc2	PF10604.9	gi|336252101|ref|YP_004595208.1|	-	1.5e-07	31.8	1.0	2.3e-07	31.2	1.0	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF2892	PF11127.8	gi|336252101|ref|YP_004595208.1|	-	2.1e-07	30.8	0.2	3.6e-07	30.1	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
Polyketide_cyc	PF03364.20	gi|336252101|ref|YP_004595208.1|	-	1.4e-05	25.3	0.0	2e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Sacchrp_dh_NADP	PF03435.18	gi|336252102|ref|YP_004595209.1|	-	1.9e-09	37.9	0.0	2.8e-09	37.3	0.0	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
RecA_dep_nuc	PF16786.5	gi|336252103|ref|YP_004595210.1|	-	0.03	14.4	0.2	0.045	13.9	0.2	1.4	1	0	0	1	1	1	0	Recombination	enhancement,	RecA-dependent	nuclease
C1_1	PF00130.22	gi|336252103|ref|YP_004595210.1|	-	0.033	14.1	2.8	0.038	13.9	0.3	2.1	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2387	PF09526.10	gi|336252103|ref|YP_004595210.1|	-	0.051	13.7	0.1	0.097	12.8	0.1	1.4	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
HNH	PF01844.23	gi|336252103|ref|YP_004595210.1|	-	0.059	13.5	3.9	0.11	12.8	3.9	1.4	1	0	0	1	1	1	0	HNH	endonuclease
MCPsignal	PF00015.21	gi|336252104|ref|YP_004595211.1|	-	6.8e-31	107.4	56.6	2.6e-30	105.5	24.2	4.2	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|336252104|ref|YP_004595211.1|	-	9e-12	45.2	11.5	1.4e-08	34.9	0.1	5.2	5	1	0	5	5	4	2	HAMP	domain
DUF1664	PF07889.12	gi|336252104|ref|YP_004595211.1|	-	8.5e-05	22.6	31.7	0.011	15.7	1.8	5.3	4	1	1	5	5	5	2	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|336252104|ref|YP_004595211.1|	-	0.0011	19.0	38.0	0.021	14.8	1.5	5.1	2	2	3	5	5	5	3	Laminin	Domain	II
DUF948	PF06103.11	gi|336252104|ref|YP_004595211.1|	-	0.0037	17.5	40.0	0.014	15.7	0.9	7.3	1	1	3	4	4	3	1	Bacterial	protein	of	unknown	function	(DUF948)
HAUS-augmin3	PF14932.6	gi|336252104|ref|YP_004595211.1|	-	0.0056	16.3	3.1	0.0056	16.3	3.1	4.1	1	1	3	4	4	4	1	HAUS	augmin-like	complex	subunit	3
Fib_alpha	PF08702.10	gi|336252104|ref|YP_004595211.1|	-	0.021	15.0	22.8	0.68	10.1	1.0	4.6	2	1	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
Seryl_tRNA_N	PF02403.22	gi|336252104|ref|YP_004595211.1|	-	0.038	14.2	35.3	0.14	12.4	1.2	5.7	1	1	4	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
IFT57	PF10498.9	gi|336252104|ref|YP_004595211.1|	-	0.047	12.7	25.8	0.026	13.5	5.1	4.1	2	1	0	3	3	3	0	Intra-flagellar	transport	protein	57
Baculo_PEP_C	PF04513.12	gi|336252104|ref|YP_004595211.1|	-	0.073	13.1	27.7	0.075	13.1	3.6	4.1	2	1	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Syntaxin_2	PF14523.6	gi|336252104|ref|YP_004595211.1|	-	0.19	12.1	14.7	14	6.2	2.4	4.7	2	1	2	4	4	3	0	Syntaxin-like	protein
TSNAXIP1_N	PF15739.5	gi|336252104|ref|YP_004595211.1|	-	0.23	11.9	0.1	0.23	11.9	0.1	5.3	4	2	1	5	5	5	0	Translin-associated	factor	X-interacting	N-terminus
NPV_P10	PF05531.12	gi|336252104|ref|YP_004595211.1|	-	0.23	12.0	31.6	0.22	12.0	1.0	6.0	3	2	3	6	6	6	0	Nucleopolyhedrovirus	P10	protein
Occludin_ELL	PF07303.13	gi|336252104|ref|YP_004595211.1|	-	0.82	10.4	13.1	4.1	8.2	0.0	5.2	4	2	2	6	6	6	0	Occludin	homology	domain
DUF2935	PF11155.8	gi|336252104|ref|YP_004595211.1|	-	1.2	9.5	8.0	0.91	9.9	0.1	3.7	3	2	1	4	4	4	0	Domain	of	unknown	function	(DUF2935)
Vac_Fusion	PF02346.16	gi|336252104|ref|YP_004595211.1|	-	1.9	8.2	4.6	10	5.8	0.0	3.2	3	0	0	3	3	3	0	Chordopoxvirus	multifunctional	envelope	protein	A27
DUF730	PF05325.11	gi|336252104|ref|YP_004595211.1|	-	2	8.4	7.5	4	7.5	0.4	3.5	4	1	1	5	5	3	0	Protein	of	unknown	function	(DUF730)
Allexi_40kDa	PF05549.11	gi|336252104|ref|YP_004595211.1|	-	3	7.3	17.7	0.05	13.1	1.2	3.3	1	1	3	4	4	4	0	Allexivirus	40kDa	protein
DASH_Duo1	PF08651.10	gi|336252104|ref|YP_004595211.1|	-	3.3	7.5	14.3	24	4.8	0.2	5.3	5	1	0	6	6	6	0	DASH	complex	subunit	Duo1
Spc7	PF08317.11	gi|336252104|ref|YP_004595211.1|	-	4.3	6.1	42.8	0.3	9.9	4.9	4.1	1	1	2	4	4	4	0	Spc7	kinetochore	protein
DCB	PF16213.5	gi|336252104|ref|YP_004595211.1|	-	4.6	6.9	6.8	47	3.6	0.2	3.2	3	0	0	3	3	3	0	Dimerisation	and	cyclophilin-binding	domain	of	Mon2
FH2	PF02181.23	gi|336252104|ref|YP_004595211.1|	-	4.8	6.2	12.6	1.2	8.1	1.3	2.9	2	1	0	2	2	2	0	Formin	Homology	2	Domain
DUF2730	PF10805.8	gi|336252104|ref|YP_004595211.1|	-	4.9	7.3	10.0	20	5.3	0.0	5.0	5	1	1	6	6	6	0	Protein	of	unknown	function	(DUF2730)
CorA	PF01544.18	gi|336252104|ref|YP_004595211.1|	-	5.7	6.2	24.5	1.4	8.2	4.8	3.6	2	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
DUF192	PF02643.15	gi|336252105|ref|YP_004595212.1|	-	2.3e-21	75.7	0.0	2.6e-21	75.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
HMGL-like	PF00682.19	gi|336252106|ref|YP_004595213.1|	-	4.9e-67	226.3	3.1	1e-66	225.2	3.1	1.5	1	0	0	1	1	1	1	HMGL-like
LeuA_dimer	PF08502.10	gi|336252106|ref|YP_004595213.1|	-	2.5e-30	105.1	3.0	5.8e-30	103.9	3.0	1.7	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
DUF998	PF06197.13	gi|336252107|ref|YP_004595214.1|	-	0.0085	15.7	6.2	0.011	15.3	6.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
Ferredoxin_N	PF16947.5	gi|336252108|ref|YP_004595215.1|	-	4.7e-33	113.1	7.7	4.7e-33	113.1	7.7	2.5	2	0	0	2	2	2	1	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
Fer4_7	PF12838.7	gi|336252108|ref|YP_004595215.1|	-	1.3e-14	54.5	19.4	1.4e-07	32.0	5.7	3.4	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|336252108|ref|YP_004595215.1|	-	1.4e-11	44.4	4.2	1.4e-11	44.4	4.2	2.7	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252108|ref|YP_004595215.1|	-	8.1e-09	35.5	23.4	5.8e-06	26.3	3.3	3.8	1	1	3	4	4	4	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336252108|ref|YP_004595215.1|	-	3.4e-08	33.0	30.3	0.0001	21.9	3.5	4.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|336252108|ref|YP_004595215.1|	-	7.6e-08	32.1	30.7	0.0012	18.8	2.9	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|336252108|ref|YP_004595215.1|	-	1.3e-06	28.4	25.0	0.0079	16.3	7.7	3.5	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336252108|ref|YP_004595215.1|	-	1.7e-06	27.8	31.6	0.00028	20.8	1.9	4.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|336252108|ref|YP_004595215.1|	-	0.0015	19.3	38.9	0.39	11.7	0.2	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336252108|ref|YP_004595215.1|	-	0.0022	18.5	20.4	0.063	13.8	2.2	4.2	2	1	3	5	5	5	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252108|ref|YP_004595215.1|	-	0.0037	17.7	25.0	0.039	14.4	5.5	4.1	2	2	2	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|336252108|ref|YP_004595215.1|	-	0.017	16.1	5.2	0.017	16.1	5.2	4.4	2	2	2	4	4	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|336252108|ref|YP_004595215.1|	-	0.046	13.8	24.7	2.3	8.4	1.5	3.7	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|336252108|ref|YP_004595215.1|	-	0.049	14.4	12.4	0.25	12.1	0.5	4.1	4	0	0	4	4	3	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|336252108|ref|YP_004595215.1|	-	0.05	14.1	26.6	0.1	13.1	3.0	4.3	4	0	0	4	4	4	0	4Fe-4S	binding	domain
AAA_3	PF07726.11	gi|336252109|ref|YP_004595216.1|	-	4.7e-67	223.8	0.3	1.3e-66	222.4	0.1	1.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|336252109|ref|YP_004595216.1|	-	3.6e-20	71.6	0.6	6.9e-20	70.7	0.6	1.5	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|336252109|ref|YP_004595216.1|	-	2.9e-15	56.5	0.0	2.3e-14	53.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|336252109|ref|YP_004595216.1|	-	1.2e-06	29.0	0.0	3.4e-06	27.5	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|336252109|ref|YP_004595216.1|	-	3.2e-05	23.7	0.0	0.0017	18.1	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|336252109|ref|YP_004595216.1|	-	0.0057	15.8	0.0	0.0089	15.2	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|336252109|ref|YP_004595216.1|	-	0.0057	16.4	0.0	0.09	12.5	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|336252109|ref|YP_004595216.1|	-	0.009	15.4	0.1	2.4	7.5	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_2	PF07724.14	gi|336252109|ref|YP_004595216.1|	-	0.035	14.2	0.0	0.074	13.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
zf-ribbon_3	PF13248.6	gi|336252110|ref|YP_004595217.1|	-	0.0014	18.0	2.7	0.0024	17.2	2.7	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336252110|ref|YP_004595217.1|	-	0.0031	17.5	0.1	0.0034	17.4	0.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.13	gi|336252110|ref|YP_004595217.1|	-	0.011	15.4	1.4	0.11	12.2	0.0	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-RING_7	PF02591.15	gi|336252110|ref|YP_004595217.1|	-	0.026	14.7	0.0	0.026	14.7	0.0	1.6	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336252110|ref|YP_004595217.1|	-	0.13	12.1	4.3	0.4	10.5	0.6	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336252110|ref|YP_004595217.1|	-	0.22	11.5	2.0	0.66	10.0	2.0	1.8	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Ribosomal_L32p	PF01783.23	gi|336252110|ref|YP_004595217.1|	-	0.3	11.4	0.6	0.43	10.9	0.6	1.2	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
Zn-ribbon_8	PF09723.10	gi|336252110|ref|YP_004595217.1|	-	0.32	11.1	4.0	0.45	10.7	0.2	2.1	1	1	0	2	2	2	0	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|336252110|ref|YP_004595217.1|	-	0.41	10.8	4.6	2.7	8.2	0.5	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Ogr_Delta	PF04606.12	gi|336252110|ref|YP_004595217.1|	-	7	6.7	6.0	0.55	10.3	0.6	1.8	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
PEPcase	PF00311.17	gi|336252111|ref|YP_004595218.1|	-	1.3e-240	800.8	0.8	1.6e-239	797.1	0.0	2.1	2	0	0	2	2	2	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.6	gi|336252111|ref|YP_004595218.1|	-	0.00084	18.0	0.0	0.0016	17.1	0.0	1.4	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
Activator-TraM	PF11657.8	gi|336252111|ref|YP_004595218.1|	-	0.083	12.7	1.5	0.55	10.1	0.1	2.7	2	1	1	3	3	3	0	Transcriptional	activator	TraM
SchA_CurD	PF04486.12	gi|336252111|ref|YP_004595218.1|	-	0.16	12.0	0.5	3.1	7.9	0.1	2.7	2	0	0	2	2	2	0	SchA/CurD	like	domain
Peptidase_M16	PF00675.20	gi|336252111|ref|YP_004595218.1|	-	1.6	8.7	5.8	0.36	10.8	0.4	2.6	3	0	0	3	3	3	0	Insulinase	(Peptidase	family	M16)
DNA_RNApol_7kD	PF03604.13	gi|336252112|ref|YP_004595219.1|	-	0.015	15.0	1.4	0.029	14.0	1.4	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.10	gi|336252112|ref|YP_004595219.1|	-	0.031	14.4	0.7	0.064	13.4	0.7	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|336252112|ref|YP_004595219.1|	-	0.036	14.1	0.8	0.043	13.8	0.8	1.2	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|336252112|ref|YP_004595219.1|	-	0.14	12.1	2.4	0.33	10.9	1.4	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.11	gi|336252112|ref|YP_004595219.1|	-	0.26	11.0	5.0	1.9	8.2	5.0	2.3	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
FlhC	PF05280.11	gi|336252112|ref|YP_004595219.1|	-	1.4	8.6	4.0	6.7	6.4	0.3	2.0	1	1	1	2	2	2	0	Flagellar	transcriptional	activator	(FlhC)
adh_short	PF00106.25	gi|336252113|ref|YP_004595220.1|	-	1.9e-46	158.0	0.1	2.6e-46	157.6	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336252113|ref|YP_004595220.1|	-	2.1e-34	119.1	0.7	2.7e-34	118.7	0.7	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|336252113|ref|YP_004595220.1|	-	5.2e-12	46.1	0.2	8.4e-12	45.4	0.2	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336252113|ref|YP_004595220.1|	-	0.004	16.6	0.1	0.0074	15.8	0.1	1.5	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ADH_zinc_N	PF00107.26	gi|336252113|ref|YP_004595220.1|	-	0.0047	16.9	0.8	0.009	16.0	0.8	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Polysacc_synt_2	PF02719.15	gi|336252113|ref|YP_004595220.1|	-	0.01	15.0	0.0	0.012	14.7	0.0	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
DFP	PF04127.15	gi|336252113|ref|YP_004595220.1|	-	0.016	15.0	0.4	0.03	14.2	0.4	1.4	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
Eno-Rase_NADH_b	PF12242.8	gi|336252113|ref|YP_004595220.1|	-	0.078	12.8	0.1	0.16	11.8	0.1	1.4	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Methyltransf_25	PF13649.6	gi|336252113|ref|YP_004595220.1|	-	0.088	13.5	0.1	0.23	12.2	0.1	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
NAD_binding_7	PF13241.6	gi|336252113|ref|YP_004595220.1|	-	0.11	12.9	0.4	0.26	11.8	0.4	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|336252113|ref|YP_004595220.1|	-	0.15	11.9	0.2	0.29	11.0	0.2	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HTH_IclR	PF09339.10	gi|336252114|ref|YP_004595221.1|	-	0.00011	22.0	0.0	0.00021	21.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252114|ref|YP_004595221.1|	-	0.00041	19.9	0.0	0.00072	19.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252114|ref|YP_004595221.1|	-	0.00054	19.8	0.0	0.0013	18.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|336252114|ref|YP_004595221.1|	-	0.0062	16.4	0.0	0.0098	15.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|336252114|ref|YP_004595221.1|	-	0.079	13.0	0.1	0.14	12.1	0.1	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Lactamase_B	PF00753.27	gi|336252115|ref|YP_004595222.1|	-	7.2e-17	62.0	8.8	8.7e-16	58.5	8.8	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336252115|ref|YP_004595222.1|	-	0.00012	21.7	1.6	0.0002	20.9	1.6	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
TTRAP	PF14203.6	gi|336252115|ref|YP_004595222.1|	-	0.18	11.8	0.1	0.67	10.0	0.1	1.9	2	0	0	2	2	2	0	Putative	tranposon-transfer	assisting	protein
ABC_tran	PF00005.27	gi|336252116|ref|YP_004595223.1|	-	1.7e-33	116.1	0.0	2.8e-33	115.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252116|ref|YP_004595223.1|	-	1.1e-09	38.5	0.2	2.1e-05	24.5	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|336252116|ref|YP_004595223.1|	-	6.6e-06	26.2	0.3	6.6e-06	26.2	0.3	2.5	3	0	0	3	3	2	1	TOBE	domain
AAA_22	PF13401.6	gi|336252116|ref|YP_004595223.1|	-	7.5e-05	23.0	0.1	0.00028	21.2	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336252116|ref|YP_004595223.1|	-	0.0016	17.9	0.0	0.14	11.5	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336252116|ref|YP_004595223.1|	-	0.0053	17.1	0.9	0.02	15.3	0.9	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336252116|ref|YP_004595223.1|	-	0.0089	16.5	0.2	0.07	13.6	0.1	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|336252116|ref|YP_004595223.1|	-	0.017	15.1	0.0	0.031	14.2	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
TOBE	PF03459.17	gi|336252116|ref|YP_004595223.1|	-	0.017	15.4	1.6	0.032	14.5	0.1	2.3	3	0	0	3	3	2	0	TOBE	domain
AAA_30	PF13604.6	gi|336252116|ref|YP_004595223.1|	-	0.031	14.0	0.1	0.083	12.6	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|336252116|ref|YP_004595223.1|	-	0.053	13.1	0.3	0.23	11.0	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336252116|ref|YP_004595223.1|	-	0.099	12.8	0.4	0.43	10.7	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.9	gi|336252116|ref|YP_004595223.1|	-	0.11	11.3	0.6	0.44	9.3	0.0	2.2	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
RsgA_GTPase	PF03193.16	gi|336252116|ref|YP_004595223.1|	-	0.14	12.1	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
SbcCD_C	PF13558.6	gi|336252116|ref|YP_004595223.1|	-	0.18	12.0	0.4	1.7	8.9	0.4	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.6	gi|336252116|ref|YP_004595223.1|	-	0.2	12.1	0.1	0.35	11.4	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|336252117|ref|YP_004595224.1|	-	2.6e-29	102.3	41.4	1.9e-16	60.4	11.2	3.0	3	1	0	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3464	PF11947.8	gi|336252117|ref|YP_004595224.1|	-	0.38	10.5	6.3	7	6.4	0.1	2.8	2	0	0	2	2	2	0	Photosynthesis	affected	mutant	68
Sm_multidrug_ex	PF06695.11	gi|336252117|ref|YP_004595224.1|	-	0.55	10.9	11.4	43	4.8	0.0	4.7	3	2	0	3	3	3	0	Putative	small	multi-drug	export	protein
SBP_bac_6	PF13343.6	gi|336252118|ref|YP_004595225.1|	-	6.5e-24	84.7	0.0	9.2e-24	84.2	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|336252118|ref|YP_004595225.1|	-	2e-17	64.0	0.4	2.4e-17	63.6	0.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336252118|ref|YP_004595225.1|	-	1.4e-08	35.1	3.1	3e-08	34.0	3.1	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|336252118|ref|YP_004595225.1|	-	0.099	12.4	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336252118|ref|YP_004595225.1|	-	0.3	11.0	2.9	0.45	10.4	2.9	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HisKA_7TM	PF16927.5	gi|336252121|ref|YP_004595228.1|	-	1.5e-44	152.7	20.1	2e-44	152.3	20.1	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|336252121|ref|YP_004595228.1|	-	1.1e-14	54.9	0.0	2.1e-14	54.0	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336252121|ref|YP_004595228.1|	-	3.1e-13	49.5	1.3	2.7e-12	46.6	0.2	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|336252121|ref|YP_004595228.1|	-	2.3e-11	43.9	0.3	1.4e-10	41.4	0.2	2.5	2	1	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|336252121|ref|YP_004595228.1|	-	4.7e-08	33.2	0.2	1.1e-07	32.1	0.0	1.7	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|336252121|ref|YP_004595228.1|	-	1.5e-05	25.0	0.0	4.2e-05	23.5	0.0	1.8	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|336252121|ref|YP_004595228.1|	-	2.2e-05	24.4	0.3	0.00015	21.7	0.2	2.4	1	1	1	2	2	2	1	PAS	domain
PAS_7	PF12860.7	gi|336252121|ref|YP_004595228.1|	-	3.6e-05	23.9	0.1	0.00053	20.1	0.1	2.4	1	1	0	1	1	1	1	PAS	fold
dCache_3	PF14827.6	gi|336252121|ref|YP_004595228.1|	-	0.0001	22.1	0.6	0.0023	17.6	0.0	2.3	2	0	0	2	2	2	1	Double	sensory	domain	of	two-component	sensor	kinase
L-fibroin	PF05849.11	gi|336252121|ref|YP_004595228.1|	-	0.015	14.6	0.1	0.3	10.3	0.0	2.3	2	0	0	2	2	2	0	Fibroin	light	chain	(L-fibroin)
HATPase_c_2	PF13581.6	gi|336252121|ref|YP_004595228.1|	-	0.016	15.2	0.1	0.034	14.1	0.1	1.5	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.6	gi|336252121|ref|YP_004595228.1|	-	0.02	15.5	0.1	0.041	14.5	0.1	1.5	1	0	0	1	1	1	0	PAS	domain
FAD-oxidase_C	PF02913.19	gi|336252122|ref|YP_004595229.1|	-	5.9e-59	199.7	0.1	1e-58	198.9	0.1	1.4	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|336252122|ref|YP_004595229.1|	-	3e-42	143.7	0.3	7.5e-42	142.4	0.3	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_8	PF13183.6	gi|336252122|ref|YP_004595229.1|	-	8.3e-11	42.2	4.6	1.9e-10	41.0	4.6	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336252122|ref|YP_004595229.1|	-	2.5e-10	40.7	4.4	4.7e-10	39.9	4.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252122|ref|YP_004595229.1|	-	0.00028	21.4	4.1	0.00077	20.0	4.1	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252122|ref|YP_004595229.1|	-	0.00069	19.7	8.6	0.029	14.5	10.3	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336252122|ref|YP_004595229.1|	-	0.001	19.1	9.7	0.15	12.2	1.2	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|336252122|ref|YP_004595229.1|	-	0.0041	16.9	11.5	0.055	13.3	3.2	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|336252122|ref|YP_004595229.1|	-	0.01	16.0	7.1	0.062	13.5	7.5	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|336252122|ref|YP_004595229.1|	-	0.013	15.7	3.1	0.18	11.9	0.2	2.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|336252122|ref|YP_004595229.1|	-	0.02	15.1	0.1	0.82	9.9	0.0	3.1	3	0	0	3	3	3	0	Cysteine-rich	domain
Fer4_16	PF13484.6	gi|336252122|ref|YP_004595229.1|	-	0.11	13.5	4.2	0.3	12.1	4.2	1.8	1	0	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|336252122|ref|YP_004595229.1|	-	0.12	12.6	0.1	0.31	11.2	0.1	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|336252122|ref|YP_004595229.1|	-	0.14	12.7	12.3	0.25	11.9	2.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|336252122|ref|YP_004595229.1|	-	0.34	11.0	12.1	0.46	10.7	2.6	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Sod_Fe_N	PF00081.22	gi|336252123|ref|YP_004595230.1|	-	4.1e-30	104.1	0.6	8.1e-30	103.1	0.6	1.5	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|336252123|ref|YP_004595230.1|	-	1.2e-28	99.2	0.0	1.8e-28	98.7	0.0	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Podoplanin	PF05808.11	gi|336252124|ref|YP_004595231.1|	-	0.013	15.6	2.2	0.017	15.2	2.2	1.1	1	0	0	1	1	1	0	Podoplanin
NDK	PF00334.19	gi|336252125|ref|YP_004595232.1|	-	6.2e-53	178.4	0.0	7.2e-53	178.2	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
DUF2285	PF10074.9	gi|336252125|ref|YP_004595232.1|	-	0.15	12.7	0.1	0.31	11.7	0.1	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2285)
Ribosomal_L24e	PF01246.20	gi|336252126|ref|YP_004595233.1|	-	2.7e-21	75.5	0.0	3.3e-21	75.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
Ribosomal_S28e	PF01200.18	gi|336252127|ref|YP_004595234.1|	-	1.4e-28	98.7	0.8	1.5e-28	98.5	0.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.26	gi|336252128|ref|YP_004595235.1|	-	3e-24	84.5	0.0	3.9e-24	84.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|336252128|ref|YP_004595235.1|	-	1.9e-05	24.5	0.0	2.5e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
eRF1_3	PF03465.15	gi|336252128|ref|YP_004595235.1|	-	0.083	13.4	0.1	0.14	12.7	0.1	1.5	1	1	0	1	1	1	0	eRF1	domain	3
DUF1269	PF06897.12	gi|336252128|ref|YP_004595235.1|	-	0.28	11.5	2.0	11	6.4	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1269)
YbjQ_1	PF01906.17	gi|336252129|ref|YP_004595236.1|	-	1.4e-34	118.8	2.5	1.6e-34	118.6	2.5	1.0	1	0	0	1	1	1	1	Putative	heavy-metal-binding
DUF4156	PF13698.6	gi|336252129|ref|YP_004595236.1|	-	0.012	15.9	0.1	0.025	14.9	0.0	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4156)
Pan_kinase	PF03309.14	gi|336252129|ref|YP_004595236.1|	-	0.029	14.2	0.1	0.035	13.9	0.1	1.1	1	0	0	1	1	1	0	Type	III	pantothenate	kinase
Helicase_RecD	PF05127.14	gi|336252130|ref|YP_004595237.1|	-	2.6e-50	170.7	0.0	4.5e-50	169.9	0.0	1.4	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|336252130|ref|YP_004595237.1|	-	3.9e-44	150.8	0.0	1.4e-27	96.6	0.0	2.2	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|336252130|ref|YP_004595237.1|	-	3.4e-28	97.4	0.0	8.1e-26	89.8	0.0	2.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|336252130|ref|YP_004595237.1|	-	2.4e-08	34.0	2.1	8.4e-08	32.2	1.2	2.2	2	0	0	2	2	2	1	AAA	domain
Acetyltransf_7	PF13508.7	gi|336252130|ref|YP_004595237.1|	-	0.0018	18.7	0.0	0.005	17.2	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|336252130|ref|YP_004595237.1|	-	0.0054	16.7	0.0	0.012	15.6	0.0	1.6	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
Acetyltransf_10	PF13673.7	gi|336252130|ref|YP_004595237.1|	-	0.038	13.9	0.0	0.074	13.0	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
GBP_PSP	PF02425.15	gi|336252131|ref|YP_004595238.1|	-	0.18	11.5	0.5	0.18	11.5	0.5	1.8	2	0	0	2	2	2	0	Paralytic/GBP/PSP	peptide
adh_short	PF00106.25	gi|336252132|ref|YP_004595239.1|	-	2e-32	112.3	0.0	2.5e-32	111.9	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336252132|ref|YP_004595239.1|	-	9.4e-24	84.3	0.2	1.2e-23	83.9	0.2	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|336252132|ref|YP_004595239.1|	-	3.3e-07	30.4	0.2	6.2e-07	29.5	0.2	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336252132|ref|YP_004595239.1|	-	3.1e-06	26.9	0.2	8.3e-06	25.4	0.2	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|336252132|ref|YP_004595239.1|	-	6.3e-06	26.2	0.4	1.1e-05	25.4	0.4	1.6	1	1	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|336252132|ref|YP_004595239.1|	-	0.074	12.1	0.1	0.11	11.5	0.1	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
DFP	PF04127.15	gi|336252132|ref|YP_004595239.1|	-	0.17	11.7	0.0	0.29	10.9	0.0	1.3	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
DUF456	PF04306.13	gi|336252133|ref|YP_004595240.1|	-	3.5e-25	88.9	24.9	3.5e-25	88.9	24.9	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
DUF2976	PF11190.8	gi|336252133|ref|YP_004595240.1|	-	7.1	6.5	9.9	0.17	11.7	2.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2976)
CarboxypepD_reg	PF13620.6	gi|336252134|ref|YP_004595241.1|	-	4.3e-26	91.0	16.8	1.1e-15	57.7	3.0	3.0	3	0	0	3	3	3	2	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|336252134|ref|YP_004595241.1|	-	3.8e-16	58.8	0.9	7.4e-07	29.1	0.2	2.3	2	0	0	2	2	2	2	CarboxypepD_reg-like	domain
PEGA	PF08308.11	gi|336252134|ref|YP_004595241.1|	-	5.4e-13	48.6	0.3	0.00012	22.0	0.1	3.4	3	0	0	3	3	3	3	PEGA	domain
DUF2012	PF09430.10	gi|336252134|ref|YP_004595241.1|	-	9.1e-06	25.8	0.0	0.16	12.1	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2012)
CooC_C	PF15976.5	gi|336252134|ref|YP_004595241.1|	-	2.9e-05	24.0	0.0	0.0032	17.5	0.0	2.4	2	0	0	2	2	2	1	CS1-pili	formation	C-terminal
Big_6	PF17936.1	gi|336252134|ref|YP_004595241.1|	-	5.1e-05	23.5	11.0	0.0057	16.9	1.5	4.0	3	2	0	3	3	3	2	Bacterial	Ig	domain
SdrD_B	PF17210.3	gi|336252134|ref|YP_004595241.1|	-	0.00085	19.5	2.1	0.0022	18.2	0.6	2.2	2	0	0	2	2	2	1	SdrD	B-like	domain
fn3_3	PF14686.6	gi|336252134|ref|YP_004595241.1|	-	0.0024	17.6	5.0	0.023	14.5	0.7	2.6	2	0	0	2	2	2	1	Polysaccharide	lyase	family	4,	domain	II
phage_tail_N	PF08400.10	gi|336252134|ref|YP_004595241.1|	-	0.0038	17.2	2.2	0.58	10.2	0.6	2.5	2	1	0	2	2	2	2	Prophage	tail	fibre	N-terminal
DUF1416	PF07210.12	gi|336252134|ref|YP_004595241.1|	-	0.004	17.0	6.9	0.54	10.2	0.1	3.3	3	1	0	3	3	3	2	Protein	of	unknown	function	(DUF1416)
SpaA	PF17802.1	gi|336252134|ref|YP_004595241.1|	-	0.0063	16.8	6.4	0.028	14.7	0.7	2.5	2	1	0	2	2	2	1	Prealbumin-like	fold	domain
MetallophosN	PF16371.5	gi|336252134|ref|YP_004595241.1|	-	0.021	15.1	2.7	0.55	10.5	0.3	2.4	2	0	0	2	2	2	0	N	terminal	of	Calcineurin-like	phosphoesterase
DUF3869	PF12985.7	gi|336252134|ref|YP_004595241.1|	-	0.025	15.0	6.8	0.37	11.2	0.6	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3869)
DUF1533	PF07550.11	gi|336252134|ref|YP_004595241.1|	-	0.026	14.4	0.1	1	9.3	0.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1533)
BiPBP_C	PF06832.12	gi|336252134|ref|YP_004595241.1|	-	0.028	14.5	1.5	0.34	11.0	0.0	3.0	4	0	0	4	4	4	0	Penicillin-Binding	Protein	C-terminus	Family
Cadherin-like	PF12733.7	gi|336252134|ref|YP_004595241.1|	-	0.029	14.9	4.7	0.69	10.5	0.2	3.2	2	1	0	2	2	2	0	Cadherin-like	beta	sandwich	domain
Copper-bind	PF00127.20	gi|336252135|ref|YP_004595242.1|	-	1e-08	35.5	1.0	2.3e-08	34.4	0.0	2.0	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|336252135|ref|YP_004595242.1|	-	2.3e-06	27.2	0.3	3.3e-06	26.7	0.3	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
tRNA-synt_1c	PF00749.21	gi|336252136|ref|YP_004595243.1|	-	8.2e-61	205.6	0.0	1.1e-60	205.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|336252136|ref|YP_004595243.1|	-	1.5e-19	70.5	0.0	4.9e-19	68.9	0.0	1.9	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
TspO_MBR	PF03073.15	gi|336252137|ref|YP_004595244.1|	-	7.9e-40	136.0	17.4	9.1e-40	135.8	17.4	1.0	1	0	0	1	1	1	1	TspO/MBR	family
CcmF_C	PF16327.5	gi|336252137|ref|YP_004595244.1|	-	0.0035	16.7	2.9	0.0041	16.4	2.9	1.1	1	0	0	1	1	1	1	Cytochrome	c-type	biogenesis	protein	CcmF	C-terminal
FeoB_associated	PF12669.7	gi|336252137|ref|YP_004595244.1|	-	4.3	7.8	0.0	4.3	7.8	0.0	3.1	3	0	0	3	3	3	0	FeoB-associated	Cys-rich	membrane	protein
polyprenyl_synt	PF00348.17	gi|336252138|ref|YP_004595245.1|	-	9e-65	218.3	0.1	1.1e-64	218.0	0.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Lactamase_B_2	PF12706.7	gi|336252139|ref|YP_004595246.1|	-	7.6e-09	35.4	2.8	3e-07	30.2	0.2	2.6	3	0	0	3	3	3	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336252139|ref|YP_004595246.1|	-	3.1e-07	30.6	1.7	1e-06	28.9	1.7	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.12	gi|336252139|ref|YP_004595246.1|	-	2e-05	24.5	0.2	0.00079	19.3	0.0	2.7	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
adh_short_C2	PF13561.6	gi|336252140|ref|YP_004595247.1|	-	2.8e-69	233.2	0.8	3.4e-69	233.0	0.8	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336252140|ref|YP_004595247.1|	-	1.7e-57	194.1	0.3	2e-57	193.8	0.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336252140|ref|YP_004595247.1|	-	3.7e-12	46.5	0.4	5.1e-12	46.1	0.4	1.2	1	0	0	1	1	1	1	KR	domain
HTH_Tnp_Tc3_1	PF11427.8	gi|336252140|ref|YP_004595247.1|	-	0.0036	17.1	0.1	0.0085	15.9	0.1	1.5	1	0	0	1	1	1	1	Tc3	transposase
Epimerase	PF01370.21	gi|336252140|ref|YP_004595247.1|	-	0.013	15.0	0.2	0.1	12.1	0.2	2.0	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
AA_kinase	PF00696.28	gi|336252141|ref|YP_004595248.1|	-	1e-36	126.8	4.6	1.3e-36	126.4	4.6	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
GHMP_kinases_N	PF00288.26	gi|336252142|ref|YP_004595249.1|	-	2.3e-16	59.8	0.8	5.5e-16	58.6	0.8	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|336252142|ref|YP_004595249.1|	-	2.3e-15	56.7	1.6	1.2e-14	54.4	0.1	2.3	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|336252142|ref|YP_004595249.1|	-	0.00028	20.4	0.1	0.00062	19.3	0.1	1.6	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
ThiP_synth	PF10120.9	gi|336252143|ref|YP_004595250.1|	-	2.2e-52	177.0	0.3	3.1e-52	176.5	0.3	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|336252143|ref|YP_004595250.1|	-	1.2e-05	25.3	0.1	3.2e-05	23.9	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix
MarR_2	PF12802.7	gi|336252143|ref|YP_004595250.1|	-	2.2e-05	24.2	0.3	0.00057	19.7	0.1	2.7	2	0	0	2	2	2	1	MarR	family
HTH_23	PF13384.6	gi|336252143|ref|YP_004595250.1|	-	9.5e-05	22.1	0.0	0.00044	20.0	0.0	2.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_31	PF13560.6	gi|336252143|ref|YP_004595250.1|	-	0.00026	21.2	3.0	0.00052	20.3	0.4	2.8	2	1	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|336252143|ref|YP_004595250.1|	-	0.0013	18.2	0.1	0.0052	16.3	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336252143|ref|YP_004595250.1|	-	0.0013	18.3	0.0	0.0028	17.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_37	PF13744.6	gi|336252143|ref|YP_004595250.1|	-	0.0021	18.0	0.0	0.0051	16.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|336252143|ref|YP_004595250.1|	-	0.0027	17.7	0.0	0.017	15.1	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|336252143|ref|YP_004595250.1|	-	0.011	15.6	0.0	0.026	14.4	0.0	1.7	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_38	PF13936.6	gi|336252143|ref|YP_004595250.1|	-	0.013	15.3	0.1	0.051	13.3	0.0	2.0	3	0	0	3	3	2	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|336252143|ref|YP_004595250.1|	-	0.018	15.1	0.0	0.21	11.8	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336252143|ref|YP_004595250.1|	-	0.024	14.3	0.1	0.055	13.1	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
RepB	PF07506.11	gi|336252143|ref|YP_004595250.1|	-	0.046	13.8	0.0	0.086	12.9	0.0	1.4	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
HTH_5	PF01022.20	gi|336252143|ref|YP_004595250.1|	-	0.049	13.5	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TetR_N	PF00440.23	gi|336252143|ref|YP_004595250.1|	-	0.12	12.1	0.9	0.36	10.7	0.1	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
HTH_11	PF08279.12	gi|336252143|ref|YP_004595250.1|	-	0.16	12.0	0.0	0.33	10.9	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
Kelch_1	PF01344.25	gi|336252143|ref|YP_004595250.1|	-	0.18	11.4	0.0	0.46	10.1	0.0	1.7	1	0	0	1	1	1	0	Kelch	motif
Trp_repressor	PF01371.19	gi|336252143|ref|YP_004595250.1|	-	0.2	11.8	0.1	0.56	10.4	0.1	1.7	1	0	0	1	1	1	0	Trp	repressor	protein
P22_Cro	PF14549.6	gi|336252143|ref|YP_004595250.1|	-	0.28	11.1	0.7	0.63	9.9	0.1	1.9	2	0	0	2	2	1	0	DNA-binding	transcriptional	regulator	Cro
Ribosomal_S2	PF00318.20	gi|336252145|ref|YP_004595252.1|	-	2.4e-24	85.8	0.5	5.9e-14	51.8	1.0	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
tRNA_synt_1c_R2	PF04557.15	gi|336252145|ref|YP_004595252.1|	-	0.074	14.0	3.4	0.073	14.0	1.9	1.7	2	0	0	2	2	2	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	2
Enolase_C	PF00113.22	gi|336252146|ref|YP_004595253.1|	-	1.3e-77	261.0	1.0	1.7e-77	260.6	1.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|336252146|ref|YP_004595253.1|	-	7.5e-35	120.0	1.5	2.1e-34	118.5	0.2	2.4	2	2	0	2	2	2	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|336252146|ref|YP_004595253.1|	-	7.8e-11	42.0	0.1	1.5e-10	41.0	0.1	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|336252146|ref|YP_004595253.1|	-	0.00034	19.9	0.1	0.00068	18.9	0.1	1.4	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
RNA_pol_Rpb6	PF01192.22	gi|336252147|ref|YP_004595254.1|	-	2.8e-11	43.2	0.0	3.2e-11	43.0	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.17	gi|336252148|ref|YP_004595255.1|	-	9.5e-29	99.5	0.2	1e-28	99.4	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Ribosomal_S9	PF00380.19	gi|336252149|ref|YP_004595256.1|	-	5.8e-33	114.0	0.1	6.5e-33	113.8	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.18	gi|336252150|ref|YP_004595257.1|	-	5.2e-10	39.6	0.1	2.6e-06	27.7	0.0	2.4	1	1	1	2	2	2	2	Ribosomal	protein	L13
Ribosomal_L18	PF17135.4	gi|336252151|ref|YP_004595258.1|	-	2e-08	33.9	0.0	2.1e-08	33.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|336252151|ref|YP_004595258.1|	-	2.2e-06	28.3	0.3	7.7e-06	26.6	0.3	1.7	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
RNA_pol_A_bac	PF01000.26	gi|336252152|ref|YP_004595259.1|	-	7.8e-21	74.6	0.0	3.8e-20	72.3	0.0	2.1	2	1	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|336252152|ref|YP_004595259.1|	-	4.5e-17	61.2	0.0	5.8e-17	60.9	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_S11	PF00411.19	gi|336252153|ref|YP_004595260.1|	-	3.8e-47	159.2	2.5	4.9e-47	158.9	2.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
Ribosomal_L18p	PF00861.22	gi|336252153|ref|YP_004595260.1|	-	0.016	15.6	0.1	0.022	15.1	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
S4	PF01479.25	gi|336252154|ref|YP_004595261.1|	-	4.7e-14	51.8	1.9	5.7e-14	51.6	0.3	1.9	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.19	gi|336252154|ref|YP_004595261.1|	-	0.00084	20.2	1.6	0.0011	19.8	1.0	1.6	1	1	1	2	2	2	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S13	PF00416.22	gi|336252155|ref|YP_004595262.1|	-	2.7e-45	153.9	3.1	3.4e-45	153.6	3.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.11	gi|336252155|ref|YP_004595262.1|	-	0.013	14.3	0.0	0.013	14.3	0.0	1.1	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF4129	PF13559.6	gi|336252156|ref|YP_004595263.1|	-	2.7e-09	37.2	2.3	2.7e-09	37.2	2.3	2.2	2	1	1	3	3	2	1	Domain	of	unknown	function	(DUF4129)
MARVEL	PF01284.23	gi|336252156|ref|YP_004595263.1|	-	0.00022	21.3	0.2	0.00066	19.7	0.1	1.7	2	0	0	2	2	2	1	Membrane-associating	domain
Cyt_bd_oxida_II	PF02322.15	gi|336252156|ref|YP_004595263.1|	-	0.00043	19.8	0.2	0.00061	19.3	0.2	1.3	1	1	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
Glucos_trans_II	PF14264.6	gi|336252156|ref|YP_004595263.1|	-	0.014	14.8	0.7	0.014	14.8	0.7	1.4	2	0	0	2	2	2	0	Glucosyl	transferase	GtrII
DUF983	PF06170.12	gi|336252156|ref|YP_004595263.1|	-	0.06	13.8	3.9	1.9	8.9	4.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF2070	PF09843.9	gi|336252156|ref|YP_004595263.1|	-	0.26	9.5	0.3	0.39	8.9	0.3	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF2157	PF09925.9	gi|336252156|ref|YP_004595263.1|	-	0.55	10.0	4.4	6.9	6.4	4.1	2.4	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2157)
MFS_1	PF07690.16	gi|336252156|ref|YP_004595263.1|	-	0.58	9.0	6.9	0.14	11.0	0.7	2.3	3	0	0	3	3	3	0	Major	Facilitator	Superfamily
DUF4131	PF13567.6	gi|336252156|ref|YP_004595263.1|	-	0.67	9.6	4.1	0.42	10.2	1.7	1.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4131)
PTPS_related	PF10131.9	gi|336252156|ref|YP_004595263.1|	-	0.98	7.7	2.6	1.5	7.0	2.6	1.2	1	0	0	1	1	1	0	6-pyruvoyl-tetrahydropterin	synthase	related	domain;	membrane	protein
Oxidored_q2	PF00420.24	gi|336252156|ref|YP_004595263.1|	-	1.2	8.8	6.6	0.23	11.1	0.7	2.2	2	0	0	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2569	PF10754.9	gi|336252156|ref|YP_004595263.1|	-	2	8.9	6.8	0.11	12.9	0.9	1.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2569)
Wzy_C	PF04932.15	gi|336252156|ref|YP_004595263.1|	-	2.6	7.7	6.6	27	4.4	7.6	1.8	2	1	0	2	2	2	0	O-Antigen	ligase
DUF58	PF01882.18	gi|336252157|ref|YP_004595264.1|	-	2.1e-19	69.6	0.4	6.2e-19	68.1	0.2	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|336252157|ref|YP_004595264.1|	-	1.2e-09	38.4	0.0	6.6e-09	36.0	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
Glyco_transf_4	PF13439.6	gi|336252157|ref|YP_004595264.1|	-	0.05	13.6	0.1	0.16	12.0	0.1	1.8	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Phage_holin_3_6	PF07332.11	gi|336252157|ref|YP_004595264.1|	-	0.64	10.1	11.0	0.047	13.7	3.5	2.6	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Sensor	PF13796.6	gi|336252157|ref|YP_004595264.1|	-	1.9	8.5	14.0	0.17	11.9	7.5	2.3	2	0	0	2	2	2	0	Putative	sensor
VPDSG-CTERM	PF18205.1	gi|336252157|ref|YP_004595264.1|	-	7.6	6.5	11.1	0.46	10.3	2.0	3.4	2	0	0	2	2	2	0	VPDSG-CTERM	motif
Radical_SAM	PF04055.21	gi|336252159|ref|YP_004595266.1|	-	6.2e-24	85.2	0.0	1.2e-23	84.3	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|336252159|ref|YP_004595266.1|	-	2.6e-15	56.5	0.1	1.1e-14	54.5	0.1	2.0	1	1	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|336252159|ref|YP_004595266.1|	-	1.7e-07	31.6	0.0	3.5e-07	30.6	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|336252159|ref|YP_004595266.1|	-	1.5e-06	28.4	0.0	3.6e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PAS_3	PF08447.12	gi|336252159|ref|YP_004595266.1|	-	0.013	15.7	0.0	0.039	14.2	0.0	1.7	1	0	0	1	1	1	0	PAS	fold
Cytochrom_C	PF00034.21	gi|336252159|ref|YP_004595266.1|	-	0.22	12.7	1.0	14	6.9	0.0	3.1	3	1	0	3	3	3	0	Cytochrome	c
HTH_10	PF04967.12	gi|336252160|ref|YP_004595267.1|	-	1.7e-17	62.9	0.1	3.4e-17	62.0	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252160|ref|YP_004595267.1|	-	2.4e-11	43.8	2.6	3.5e-11	43.2	2.6	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|336252160|ref|YP_004595267.1|	-	0.022	14.6	0.1	0.084	12.8	0.0	2.0	2	0	0	2	2	2	0	MarR	family
DUF1463	PF07316.11	gi|336252160|ref|YP_004595267.1|	-	0.099	12.5	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1463)
RtcB	PF01139.17	gi|336252162|ref|YP_004595269.1|	-	2.1e-157	524.5	0.1	2.4e-157	524.4	0.1	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DoxX	PF07681.12	gi|336252163|ref|YP_004595270.1|	-	9.2e-08	32.6	9.9	9.2e-08	32.6	9.9	3.9	3	1	0	3	3	3	2	DoxX
DoxD	PF04173.13	gi|336252163|ref|YP_004595270.1|	-	0.0048	16.8	9.4	0.045	13.6	1.2	3.5	3	1	0	3	3	3	2	TQO	small	subunit	DoxD
Wzy_C	PF04932.15	gi|336252163|ref|YP_004595270.1|	-	0.041	13.5	5.6	1.9	8.1	2.6	2.6	2	0	0	2	2	2	0	O-Antigen	ligase
DUF4321	PF14209.6	gi|336252163|ref|YP_004595270.1|	-	0.074	12.9	1.3	0.22	11.4	1.3	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4321)
DoxX_3	PF13781.6	gi|336252163|ref|YP_004595270.1|	-	6.7	7.4	18.8	4.4	8.0	5.6	2.9	2	1	0	2	2	2	0	DoxX-like	family
Archease	PF01951.16	gi|336252165|ref|YP_004595272.1|	-	3.7e-37	127.6	0.1	4.2e-37	127.5	0.1	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Acetyltransf_7	PF13508.7	gi|336252166|ref|YP_004595273.1|	-	2.8e-15	56.5	0.1	4.6e-15	55.8	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336252166|ref|YP_004595273.1|	-	3.7e-15	56.0	0.1	4.5e-15	55.7	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336252166|ref|YP_004595273.1|	-	3.9e-14	52.9	0.2	5.5e-14	52.4	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.10	gi|336252166|ref|YP_004595273.1|	-	7.9e-10	38.6	0.0	1.2e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|336252166|ref|YP_004595273.1|	-	0.00061	20.0	0.1	0.0012	19.0	0.1	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|336252166|ref|YP_004595273.1|	-	0.00081	19.6	0.1	0.0014	18.8	0.1	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336252166|ref|YP_004595273.1|	-	0.0025	17.9	0.0	0.0083	16.2	0.0	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336252166|ref|YP_004595273.1|	-	0.0038	17.3	0.0	0.0065	16.6	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_18	PF18014.1	gi|336252166|ref|YP_004595273.1|	-	0.055	13.3	0.0	0.12	12.2	0.0	1.5	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
NTS_2	PF15448.6	gi|336252166|ref|YP_004595273.1|	-	2.9	8.3	5.5	1.8	9.1	3.3	1.7	2	0	0	2	2	2	0	N-terminal	segments	of	P.	falciparum	erythrocyte	membrane	protein
HTH_20	PF12840.7	gi|336252167|ref|YP_004595274.1|	-	1.4e-12	47.5	1.2	3.2e-12	46.3	1.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252167|ref|YP_004595274.1|	-	4e-06	26.6	0.3	5.4e-05	23.0	0.3	2.3	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.10	gi|336252167|ref|YP_004595274.1|	-	0.0026	17.7	0.4	0.0048	16.8	0.4	1.5	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
PadR	PF03551.14	gi|336252167|ref|YP_004595274.1|	-	0.0026	17.7	0.2	0.0051	16.7	0.2	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TFIIE_alpha	PF02002.17	gi|336252167|ref|YP_004595274.1|	-	0.0031	17.3	0.0	0.005	16.7	0.0	1.4	1	0	0	1	1	1	1	TFIIE	alpha	subunit
PqqD	PF05402.12	gi|336252167|ref|YP_004595274.1|	-	0.0048	17.2	1.9	0.33	11.3	0.0	2.6	2	1	0	2	2	2	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
TrmB	PF01978.19	gi|336252167|ref|YP_004595274.1|	-	0.04	13.8	0.0	0.1	12.5	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Cdc6_C	PF09079.11	gi|336252167|ref|YP_004595274.1|	-	0.1	12.6	0.1	0.2	11.6	0.1	1.5	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
HTH_24	PF13412.6	gi|336252167|ref|YP_004595274.1|	-	0.17	11.5	0.1	0.44	10.1	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HMA	PF00403.26	gi|336252168|ref|YP_004595275.1|	-	1.4e-12	47.8	0.1	1.6e-12	47.7	0.1	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Tox-PL-2	PF15643.6	gi|336252168|ref|YP_004595275.1|	-	0.001	19.1	0.0	0.0011	19.1	0.0	1.0	1	0	0	1	1	1	1	Papain	fold	toxin	2
Thioredoxin_4	PF13462.6	gi|336252168|ref|YP_004595275.1|	-	0.0037	17.4	0.0	0.0039	17.4	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
E1-E2_ATPase	PF00122.20	gi|336252169|ref|YP_004595276.1|	-	1.3e-45	155.1	2.0	1.3e-45	155.1	2.0	1.9	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336252169|ref|YP_004595276.1|	-	7.2e-40	137.5	6.5	7.2e-40	137.5	6.5	1.7	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336252169|ref|YP_004595276.1|	-	0.00082	19.8	0.4	0.00082	19.8	0.4	2.6	3	1	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|336252169|ref|YP_004595276.1|	-	0.0013	18.5	1.4	0.13	12.0	1.3	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|336252169|ref|YP_004595276.1|	-	0.003	17.6	0.8	0.019	15.1	0.0	2.7	4	0	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
CBS	PF00571.28	gi|336252169|ref|YP_004595276.1|	-	0.04	14.4	0.2	0.18	12.3	0.0	2.3	2	0	0	2	2	2	0	CBS	domain
FmdE	PF02663.14	gi|336252170|ref|YP_004595277.1|	-	3.9e-05	23.7	0.0	9.5e-05	22.5	0.0	1.6	1	1	0	1	1	1	1	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
DNA_primase_S	PF01896.19	gi|336252171|ref|YP_004595278.1|	-	2e-23	83.3	0.0	4.8e-23	82.1	0.0	1.6	1	1	0	1	1	1	1	DNA	primase	small	subunit
Sld5	PF05916.11	gi|336252172|ref|YP_004595279.1|	-	0.00042	20.8	0.1	0.00067	20.1	0.1	1.3	1	0	0	1	1	1	1	GINS	complex	protein
CorA	PF01544.18	gi|336252172|ref|YP_004595279.1|	-	0.15	11.3	1.0	0.26	10.6	0.6	1.5	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
AhpC-TSA	PF00578.21	gi|336252173|ref|YP_004595280.1|	-	5.3e-34	116.8	0.0	6.4e-34	116.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336252173|ref|YP_004595280.1|	-	4.3e-17	62.2	0.0	5.1e-17	61.9	0.0	1.0	1	0	0	1	1	1	1	Redoxin
SCO1-SenC	PF02630.14	gi|336252173|ref|YP_004595280.1|	-	7.5e-07	29.1	0.0	1e-06	28.7	0.0	1.3	1	0	0	1	1	1	1	SCO1/SenC
DUF899	PF05988.12	gi|336252173|ref|YP_004595280.1|	-	0.0016	18.0	0.0	0.0018	17.8	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
HTH_24	PF13412.6	gi|336252174|ref|YP_004595281.1|	-	3.7e-13	48.8	0.1	5.7e-13	48.2	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336252174|ref|YP_004595281.1|	-	4.8e-12	45.5	0.9	8.9e-12	44.6	0.9	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336252174|ref|YP_004595281.1|	-	0.00011	22.0	0.1	0.00029	20.7	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|336252174|ref|YP_004595281.1|	-	0.0002	21.4	0.0	0.00035	20.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
BAT	PF15915.5	gi|336252174|ref|YP_004595281.1|	-	0.00022	21.1	1.8	0.00041	20.3	1.8	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_11	PF08279.12	gi|336252174|ref|YP_004595281.1|	-	0.0013	18.6	0.1	0.0035	17.2	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_CodY	PF08222.11	gi|336252174|ref|YP_004595281.1|	-	0.0015	18.1	0.3	0.0034	16.9	0.3	1.6	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
TrmB	PF01978.19	gi|336252174|ref|YP_004595281.1|	-	0.005	16.7	0.0	4.2	7.3	0.0	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|336252174|ref|YP_004595281.1|	-	0.0068	16.3	0.0	0.016	15.1	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|336252174|ref|YP_004595281.1|	-	0.0094	15.9	0.0	0.023	14.7	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336252174|ref|YP_004595281.1|	-	0.0097	16.4	0.1	0.028	14.9	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|336252174|ref|YP_004595281.1|	-	0.011	15.5	0.0	0.018	14.8	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Glyco_hydro_101	PF12905.7	gi|336252174|ref|YP_004595281.1|	-	0.017	14.6	0.0	0.023	14.1	0.0	1.2	1	0	0	1	1	1	0	Endo-alpha-N-acetylgalactosaminidase
P2	PF07194.11	gi|336252174|ref|YP_004595281.1|	-	0.022	14.8	0.3	0.094	12.8	0.0	1.9	2	0	0	2	2	2	0	P2	response	regulator	binding	domain
HTH_23	PF13384.6	gi|336252174|ref|YP_004595281.1|	-	0.041	13.7	0.0	0.13	12.1	0.0	1.8	2	0	0	2	2	2	0	Homeodomain-like	domain
AsnC_trans_reg2	PF17805.1	gi|336252174|ref|YP_004595281.1|	-	0.043	14.0	0.0	0.092	12.9	0.0	1.6	1	0	0	1	1	1	0	AsnC-like	ligand	binding	domain
DprA_WH	PF17782.1	gi|336252174|ref|YP_004595281.1|	-	0.045	13.9	0.3	0.13	12.4	0.1	1.8	2	0	0	2	2	2	0	DprA	winged	helix	domain
ALS_ss_C	PF10369.9	gi|336252174|ref|YP_004595281.1|	-	0.085	13.1	0.6	0.15	12.3	0.6	1.4	1	0	0	1	1	1	0	Small	subunit	of	acetolactate	synthase
LexA_DNA_bind	PF01726.16	gi|336252174|ref|YP_004595281.1|	-	0.17	11.7	0.0	0.29	10.9	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HalOD1	PF18545.1	gi|336252175|ref|YP_004595282.1|	-	1e-20	73.8	0.2	1.4e-20	73.4	0.2	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
AAA	PF00004.29	gi|336252176|ref|YP_004595283.1|	-	1.7e-100	332.6	0.0	3.1e-49	166.8	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|336252176|ref|YP_004595283.1|	-	3.8e-29	100.2	2.9	4.1e-16	58.5	0.2	2.9	2	1	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|336252176|ref|YP_004595283.1|	-	2.2e-24	85.4	0.1	1.8e-23	82.5	0.1	2.5	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.14	gi|336252176|ref|YP_004595283.1|	-	8.6e-17	61.8	0.1	4.5e-08	33.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|336252176|ref|YP_004595283.1|	-	3.2e-16	59.5	0.0	7.3e-08	32.3	0.0	2.7	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|336252176|ref|YP_004595283.1|	-	4.4e-15	55.2	0.2	1.5e-14	53.5	0.2	1.9	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.6	gi|336252176|ref|YP_004595283.1|	-	2.2e-13	50.9	0.5	1e-05	26.0	0.1	3.7	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336252176|ref|YP_004595283.1|	-	2.2e-11	44.1	0.0	0.00012	22.2	0.0	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|336252176|ref|YP_004595283.1|	-	1.3e-10	41.4	1.4	0.0006	19.8	0.1	4.6	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|336252176|ref|YP_004595283.1|	-	1.3e-10	41.7	1.2	0.0026	18.1	0.0	4.0	3	2	2	5	5	4	2	AAA	domain
TIP49	PF06068.13	gi|336252176|ref|YP_004595283.1|	-	3e-10	39.9	0.0	0.00027	20.3	0.0	2.3	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_14	PF13173.6	gi|336252176|ref|YP_004595283.1|	-	4.1e-09	36.6	0.0	0.0012	18.9	0.0	2.6	3	0	0	3	3	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|336252176|ref|YP_004595283.1|	-	2.6e-08	34.2	0.0	0.0054	17.1	0.0	2.7	2	1	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.17	gi|336252176|ref|YP_004595283.1|	-	1.1e-07	31.8	0.0	0.0046	16.7	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|336252176|ref|YP_004595283.1|	-	1.8e-07	30.9	0.0	0.022	14.3	0.0	2.6	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
DUF815	PF05673.13	gi|336252176|ref|YP_004595283.1|	-	3.5e-07	29.6	0.0	0.0022	17.2	0.0	2.8	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|336252176|ref|YP_004595283.1|	-	4.4e-07	29.5	0.5	0.013	14.8	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|336252176|ref|YP_004595283.1|	-	8.7e-07	28.7	0.8	0.38	10.3	0.1	4.0	4	0	0	4	4	4	1	AAA	domain
AAA_3	PF07726.11	gi|336252176|ref|YP_004595283.1|	-	1.5e-06	28.1	0.0	0.016	15.0	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|336252176|ref|YP_004595283.1|	-	2.1e-06	28.1	0.0	0.043	14.1	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|336252176|ref|YP_004595283.1|	-	2.8e-06	27.4	0.0	0.11	12.5	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Sigma54_activat	PF00158.26	gi|336252176|ref|YP_004595283.1|	-	4.2e-06	26.6	0.1	0.12	12.1	0.0	3.4	4	1	0	4	4	3	2	Sigma-54	interaction	domain
AAA_18	PF13238.6	gi|336252176|ref|YP_004595283.1|	-	5.1e-06	27.1	0.0	0.2	12.2	0.0	3.1	3	1	0	3	3	2	2	AAA	domain
ABC_tran	PF00005.27	gi|336252176|ref|YP_004595283.1|	-	5.2e-06	27.0	0.0	0.11	13.0	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_11	PF13086.6	gi|336252176|ref|YP_004595283.1|	-	1.2e-05	25.2	0.0	0.13	12.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|336252176|ref|YP_004595283.1|	-	1.8e-05	24.3	0.1	0.065	12.7	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.12	gi|336252176|ref|YP_004595283.1|	-	1.9e-05	24.6	0.3	0.89	9.5	0.0	4.0	3	1	0	3	3	3	2	NACHT	domain
ATPase	PF06745.13	gi|336252176|ref|YP_004595283.1|	-	2e-05	24.1	0.2	0.23	10.8	0.0	3.4	2	1	1	3	3	3	2	KaiC
AAA_24	PF13479.6	gi|336252176|ref|YP_004595283.1|	-	2.1e-05	24.4	0.1	0.15	11.8	0.1	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|336252176|ref|YP_004595283.1|	-	2.8e-05	23.9	0.1	0.15	11.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|336252176|ref|YP_004595283.1|	-	3.5e-05	23.1	0.0	0.2	10.8	0.0	2.6	2	0	0	2	2	2	2	NB-ARC	domain
Zeta_toxin	PF06414.12	gi|336252176|ref|YP_004595283.1|	-	5.6e-05	22.5	0.1	0.18	11.1	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
DUF2075	PF09848.9	gi|336252176|ref|YP_004595283.1|	-	8.1e-05	22.0	0.0	0.27	10.4	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Vps4_C	PF09336.10	gi|336252176|ref|YP_004595283.1|	-	0.00017	21.5	0.1	0.25	11.3	0.0	2.7	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
ATPase_2	PF01637.18	gi|336252176|ref|YP_004595283.1|	-	0.00018	21.5	0.0	1.1	9.2	0.0	3.6	2	2	2	4	4	4	1	ATPase	domain	predominantly	from	Archaea
Bac_DnaA	PF00308.18	gi|336252176|ref|YP_004595283.1|	-	0.00033	20.6	0.0	0.16	11.8	0.0	2.5	2	0	0	2	2	2	1	Bacterial	dnaA	protein
Parvo_NS1	PF01057.17	gi|336252176|ref|YP_004595283.1|	-	0.00039	19.6	0.1	0.55	9.3	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_17	PF13207.6	gi|336252176|ref|YP_004595283.1|	-	0.00095	19.6	0.0	2.8	8.4	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.6	gi|336252176|ref|YP_004595283.1|	-	0.00095	19.5	0.3	2.5	8.4	0.2	2.7	2	1	1	3	3	2	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|336252176|ref|YP_004595283.1|	-	0.00098	19.3	0.0	3	8.0	0.0	3.0	3	0	0	3	3	3	1	Sigma-54	interaction	domain
NTPase_1	PF03266.15	gi|336252176|ref|YP_004595283.1|	-	0.001	19.0	0.5	1.9	8.4	0.0	3.7	3	2	1	4	4	2	1	NTPase
Rad17	PF03215.15	gi|336252176|ref|YP_004595283.1|	-	0.0063	16.5	0.0	5.4	6.9	0.0	3.0	3	0	0	3	3	3	0	Rad17	P-loop	domain
T2SSE	PF00437.20	gi|336252176|ref|YP_004595283.1|	-	0.0064	15.6	0.0	1.5	7.8	0.0	2.3	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
ResIII	PF04851.15	gi|336252176|ref|YP_004595283.1|	-	0.0078	16.2	0.1	3.3	7.7	0.0	2.9	2	2	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AFG1_ATPase	PF03969.16	gi|336252176|ref|YP_004595283.1|	-	0.0078	15.1	0.0	2.9	6.7	0.0	2.5	2	0	0	2	2	2	1	AFG1-like	ATPase
Zot	PF05707.12	gi|336252176|ref|YP_004595283.1|	-	0.012	15.3	0.0	0.58	9.8	0.0	2.6	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Cytidylate_kin	PF02224.18	gi|336252176|ref|YP_004595283.1|	-	0.025	14.3	0.1	10	5.8	0.0	2.9	3	0	0	3	3	3	0	Cytidylate	kinase
HJURP_C	PF12347.8	gi|336252176|ref|YP_004595283.1|	-	0.029	14.4	0.3	0.068	13.2	0.3	1.6	1	0	0	1	1	1	0	Holliday	junction	regulator	protein	family	C-terminal	repeat
TniB	PF05621.11	gi|336252176|ref|YP_004595283.1|	-	0.043	13.2	0.1	20	4.5	0.0	3.5	2	2	2	4	4	4	0	Bacterial	TniB	protein
Torsin	PF06309.11	gi|336252176|ref|YP_004595283.1|	-	0.086	12.9	0.0	5.9	7.0	0.0	2.5	2	0	0	2	2	2	0	Torsin
cobW	PF02492.19	gi|336252176|ref|YP_004595283.1|	-	0.093	12.3	0.1	56	3.3	0.0	3.3	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
DnaG_DnaB_bind	PF08278.11	gi|336252176|ref|YP_004595283.1|	-	0.1	13.2	0.0	22	5.7	0.0	3.0	2	1	0	2	2	2	0	DNA	primase	DnaG	DnaB-binding
AAA_29	PF13555.6	gi|336252176|ref|YP_004595283.1|	-	0.12	12.1	0.0	22	4.9	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
PIF1	PF05970.14	gi|336252176|ref|YP_004595283.1|	-	0.15	11.2	0.0	8	5.5	0.0	2.5	3	0	0	3	3	2	0	PIF1-like	helicase
Viral_helicase1	PF01443.18	gi|336252176|ref|YP_004595283.1|	-	0.21	11.3	0.0	16	5.2	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
COOH-NH2_lig	PF14395.6	gi|336252176|ref|YP_004595283.1|	-	0.37	10.0	1.1	6.7	5.8	0.0	2.6	3	0	0	3	3	3	0	Phage	phiEco32-like	COOH.NH2	ligase-type	2
HMA	PF00403.26	gi|336252177|ref|YP_004595284.1|	-	0.12	12.9	1.5	0.15	12.5	0.9	1.6	1	1	1	2	2	2	0	Heavy-metal-associated	domain
TatD_DNase	PF01026.21	gi|336252178|ref|YP_004595285.1|	-	6.3e-17	61.8	0.1	2.4e-14	53.3	0.0	2.0	1	1	1	2	2	2	2	TatD	related	DNase
DUF2150	PF09920.9	gi|336252179|ref|YP_004595286.1|	-	8.6e-72	241.1	7.8	9.8e-72	240.9	7.8	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
zf-HC2	PF13490.6	gi|336252179|ref|YP_004595286.1|	-	9.6	6.5	6.8	2.1	8.7	0.2	3.0	3	0	0	3	3	3	0	Putative	zinc-finger
HMG_CoA_synt_N	PF01154.17	gi|336252181|ref|YP_004595288.1|	-	1e-26	93.9	0.0	1.7e-26	93.2	0.0	1.4	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.10	gi|336252181|ref|YP_004595288.1|	-	2.4e-24	86.4	0.0	3.9e-24	85.8	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
ACP_syn_III	PF08545.10	gi|336252181|ref|YP_004595288.1|	-	0.069	13.0	0.2	0.16	11.8	0.2	1.5	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
MAF_flag10	PF01973.18	gi|336252181|ref|YP_004595288.1|	-	0.098	12.4	0.0	1	9.0	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF115
DsbD_2	PF13386.6	gi|336252183|ref|YP_004595290.1|	-	5.6e-51	173.3	12.8	6.8e-51	173.1	12.8	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
PIRT	PF15099.6	gi|336252183|ref|YP_004595290.1|	-	0.17	11.4	1.5	0.28	10.8	0.3	1.9	2	0	0	2	2	2	0	Phosphoinositide-interacting	protein	family
E1-E2_ATPase	PF00122.20	gi|336252184|ref|YP_004595291.1|	-	4.2e-43	147.0	4.6	4.2e-43	147.0	4.6	2.6	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336252184|ref|YP_004595291.1|	-	4.7e-33	115.3	8.7	8.9e-33	114.3	8.7	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336252184|ref|YP_004595291.1|	-	4.6e-12	46.2	0.0	2.3e-11	44.0	0.0	2.3	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|336252184|ref|YP_004595291.1|	-	0.0042	16.9	0.8	0.008	15.9	0.8	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|336252184|ref|YP_004595291.1|	-	0.0067	17.1	0.9	0.013	16.2	0.2	1.8	1	1	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
DUF5612	PF18462.1	gi|336252184|ref|YP_004595291.1|	-	0.029	14.2	2.3	0.11	12.3	2.3	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5612)
AI-2E_transport	PF01594.16	gi|336252185|ref|YP_004595292.1|	-	5e-34	117.9	32.3	6.5e-34	117.6	32.3	1.1	1	0	0	1	1	1	1	AI-2E	family	transporter
DUF2270	PF10028.9	gi|336252186|ref|YP_004595293.1|	-	1.9e-68	229.7	1.7	2.2e-68	229.5	1.7	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
DUF998	PF06197.13	gi|336252186|ref|YP_004595293.1|	-	0.011	15.3	3.8	0.015	14.9	0.9	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF998)
CPP1-like	PF11833.8	gi|336252186|ref|YP_004595293.1|	-	0.12	12.0	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF2516	PF10724.9	gi|336252186|ref|YP_004595293.1|	-	0.13	12.5	0.1	0.13	12.5	0.1	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2516)
FtsK_4TM	PF13491.6	gi|336252186|ref|YP_004595293.1|	-	0.21	11.3	0.1	0.21	11.3	0.1	2.2	2	1	0	2	2	2	0	4TM	region	of	DNA	translocase	FtsK/SpoIIIE
DUF4131	PF13567.6	gi|336252186|ref|YP_004595293.1|	-	0.41	10.3	6.6	6.2	6.4	3.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Trp_oprn_chp	PF09534.10	gi|336252186|ref|YP_004595293.1|	-	0.41	10.4	3.2	1.1	9.0	1.1	2.2	2	1	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4199	PF13858.6	gi|336252186|ref|YP_004595293.1|	-	3.6	8.0	6.7	18	5.7	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4199)
GDC-P	PF02347.16	gi|336252187|ref|YP_004595294.1|	-	1.2e-98	330.7	0.0	1.5e-98	330.5	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|336252187|ref|YP_004595294.1|	-	0.00043	19.3	0.0	0.00068	18.7	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|336252187|ref|YP_004595294.1|	-	0.037	12.6	0.0	0.051	12.1	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|336252188|ref|YP_004595295.1|	-	6.3e-10	38.6	0.0	9.4e-10	38.0	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|336252188|ref|YP_004595295.1|	-	5.7e-05	22.5	0.0	9.3e-05	21.8	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
GDC-P	PF02347.16	gi|336252188|ref|YP_004595295.1|	-	5.8e-05	22.1	0.0	0.0016	17.4	0.0	2.1	2	0	0	2	2	2	1	Glycine	cleavage	system	P-protein
Cys_Met_Meta_PP	PF01053.20	gi|336252188|ref|YP_004595295.1|	-	0.21	10.1	0.0	0.35	9.3	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
zf-H2C2_2	PF13465.6	gi|336252189|ref|YP_004595296.1|	-	4.9e-05	23.6	2.8	0.013	15.9	0.3	2.1	2	0	0	2	2	2	2	Zinc-finger	double	domain
Rubredoxin	PF00301.20	gi|336252189|ref|YP_004595296.1|	-	0.00034	20.6	1.3	0.47	10.5	0.2	2.2	2	0	0	2	2	2	2	Rubredoxin
zf-C2H2	PF00096.26	gi|336252189|ref|YP_004595296.1|	-	0.00071	19.9	2.2	0.17	12.4	0.1	2.2	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
Zn_Tnp_IS1595	PF12760.7	gi|336252189|ref|YP_004595296.1|	-	0.00087	19.2	0.7	0.0013	18.7	0.7	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|336252189|ref|YP_004595296.1|	-	0.0015	18.7	0.3	0.12	12.6	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon
Lar_restr_allev	PF14354.6	gi|336252189|ref|YP_004595296.1|	-	0.0027	18.1	0.8	0.0034	17.7	0.8	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.6	gi|336252189|ref|YP_004595296.1|	-	0.009	15.4	3.0	0.39	10.2	0.5	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF983	PF06170.12	gi|336252189|ref|YP_004595296.1|	-	0.012	16.1	2.2	0.23	11.9	0.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
Zn_ribbon_SprT	PF17283.2	gi|336252189|ref|YP_004595296.1|	-	0.017	15.0	2.4	1.1	9.2	0.3	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|336252189|ref|YP_004595296.1|	-	0.02	14.4	1.1	0.15	11.6	0.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf_Rg	PF17915.1	gi|336252189|ref|YP_004595296.1|	-	0.026	13.9	0.2	0.32	10.4	0.0	2.0	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
TFIIS_C	PF01096.18	gi|336252189|ref|YP_004595296.1|	-	0.028	14.3	2.4	0.098	12.5	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Rubredoxin_2	PF18073.1	gi|336252189|ref|YP_004595296.1|	-	0.029	14.1	3.5	0.94	9.3	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-LITAF-like	PF10601.9	gi|336252189|ref|YP_004595296.1|	-	0.032	14.5	0.8	0.69	10.2	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
DUF1272	PF06906.11	gi|336252189|ref|YP_004595296.1|	-	0.037	14.1	2.2	1.7	8.8	0.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Ribosomal_S27e	PF01667.17	gi|336252189|ref|YP_004595296.1|	-	0.052	13.3	1.1	0.45	10.2	0.0	2.0	1	1	1	2	2	2	0	Ribosomal	protein	S27
DUF3268	PF11672.8	gi|336252189|ref|YP_004595296.1|	-	0.056	13.8	0.2	0.059	13.7	0.2	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
DUF1610	PF07754.11	gi|336252189|ref|YP_004595296.1|	-	0.12	12.3	2.3	0.12	12.3	2.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
HypA	PF01155.19	gi|336252189|ref|YP_004595296.1|	-	0.12	12.4	0.4	0.18	11.8	0.4	1.4	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ISL3	PF14690.6	gi|336252189|ref|YP_004595296.1|	-	0.13	12.9	4.3	0.94	10.2	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CpXC	PF14353.6	gi|336252189|ref|YP_004595296.1|	-	0.15	12.1	2.5	12	5.9	2.5	2.1	1	1	0	1	1	1	0	CpXC	protein
DNA_ligase_ZBD	PF03119.16	gi|336252189|ref|YP_004595296.1|	-	0.2	11.7	3.3	6.2	6.9	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|336252189|ref|YP_004595296.1|	-	0.36	11.0	4.6	2.7	8.2	0.7	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|336252189|ref|YP_004595296.1|	-	0.4	10.5	3.0	4.9	7.0	0.3	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF3797	PF12677.7	gi|336252189|ref|YP_004595296.1|	-	1	9.3	5.8	16	5.4	2.0	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF3797)
Cob_adeno_trans	PF01923.18	gi|336252190|ref|YP_004595297.1|	-	7.2e-57	192.1	0.0	8.1e-57	191.9	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
ABATE	PF07336.11	gi|336252190|ref|YP_004595297.1|	-	0.19	12.4	7.4	0.57	10.9	7.3	1.8	1	1	0	1	1	1	0	Putative	stress-induced	transcription	regulator
HTH_20	PF12840.7	gi|336252191|ref|YP_004595298.1|	-	0.00011	22.2	0.9	0.00068	19.6	0.9	2.0	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|336252192|ref|YP_004595299.1|	-	9.9e-17	60.5	0.0	1.7e-16	59.7	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252192|ref|YP_004595299.1|	-	5.1e-12	45.9	3.1	8.1e-12	45.3	3.1	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336252192|ref|YP_004595299.1|	-	8.7e-05	22.0	0.3	0.00017	21.0	0.3	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336252192|ref|YP_004595299.1|	-	0.00029	20.3	0.5	0.00087	18.8	0.2	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252192|ref|YP_004595299.1|	-	0.00095	19.0	0.0	0.0026	17.6	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336252192|ref|YP_004595299.1|	-	0.0026	17.5	0.9	0.0026	17.5	0.9	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336252192|ref|YP_004595299.1|	-	0.016	14.8	0.2	0.15	11.8	0.2	2.4	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|336252192|ref|YP_004595299.1|	-	0.017	15.1	0.0	0.13	12.3	0.0	2.3	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_3	PF01381.22	gi|336252192|ref|YP_004595299.1|	-	0.11	12.6	0.3	0.46	10.6	0.1	2.2	2	1	1	3	3	3	0	Helix-turn-helix
Apolipoprotein	PF01442.18	gi|336252193|ref|YP_004595300.1|	-	0.011	15.7	2.4	0.047	13.6	1.7	1.9	1	1	1	2	2	2	0	Apolipoprotein	A1/A4/E	domain
DUF883	PF05957.13	gi|336252193|ref|YP_004595300.1|	-	0.15	12.6	2.9	0.42	11.2	0.7	2.0	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Exotox-A_target	PF09102.10	gi|336252193|ref|YP_004595300.1|	-	0.16	12.0	2.0	0.26	11.3	1.5	1.5	1	1	0	1	1	1	0	Exotoxin	A,	targeting
DUF1490	PF07371.12	gi|336252193|ref|YP_004595300.1|	-	0.35	11.0	3.8	0.67	10.1	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1490)
Sensor	PF13796.6	gi|336252194|ref|YP_004595301.1|	-	0.0082	16.2	8.5	0.17	11.9	1.5	2.3	2	0	0	2	2	2	2	Putative	sensor
RVT_3	PF13456.6	gi|336252198|ref|YP_004595305.1|	-	1.5e-26	92.6	0.0	2.1e-26	92.1	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|336252198|ref|YP_004595305.1|	-	2.5e-11	43.9	0.0	7.5e-11	42.4	0.0	1.8	1	1	0	1	1	1	1	RNase	H
Radical_SAM	PF04055.21	gi|336252198|ref|YP_004595305.1|	-	0.074	13.4	0.0	0.13	12.6	0.0	1.4	1	1	0	1	1	1	0	Radical	SAM	superfamily
TFIIB	PF00382.19	gi|336252199|ref|YP_004595306.1|	-	9.6e-47	156.9	2.9	8.4e-26	89.8	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336252199|ref|YP_004595306.1|	-	4.3e-19	67.7	3.4	8.6e-19	66.8	3.4	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|336252199|ref|YP_004595306.1|	-	0.0036	17.0	0.5	0.0082	15.8	0.5	1.6	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
HARE-HTH	PF05066.13	gi|336252199|ref|YP_004595306.1|	-	0.011	16.1	0.1	0.52	10.7	0.1	2.4	2	0	0	2	2	2	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336252199|ref|YP_004595306.1|	-	0.039	13.9	2.1	0.084	12.8	2.1	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
Cyclin_C	PF02984.19	gi|336252199|ref|YP_004595306.1|	-	0.058	13.5	0.0	0.56	10.3	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|336252199|ref|YP_004595306.1|	-	0.076	12.5	2.9	0.37	10.3	0.1	3.4	3	1	1	4	4	4	0	Sigma-70,	region	4
RB_B	PF01857.20	gi|336252199|ref|YP_004595306.1|	-	0.078	13.0	0.0	1.7	8.6	0.0	2.3	2	0	0	2	2	2	0	Retinoblastoma-associated	protein	B	domain
Zn_Tnp_IS1595	PF12760.7	gi|336252199|ref|YP_004595306.1|	-	0.079	13.0	0.1	0.18	11.8	0.1	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|336252199|ref|YP_004595306.1|	-	0.095	13.1	1.3	0.17	12.3	0.4	1.9	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
HTH_23	PF13384.6	gi|336252199|ref|YP_004595306.1|	-	0.096	12.5	0.8	0.7	9.8	0.1	2.8	3	0	0	3	3	3	0	Homeodomain-like	domain
RPA_interact_C	PF14768.6	gi|336252199|ref|YP_004595306.1|	-	0.12	12.9	0.0	0.29	11.7	0.0	1.8	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
Zn-ribbon_8	PF09723.10	gi|336252199|ref|YP_004595306.1|	-	0.87	9.8	3.4	6.6	6.9	0.4	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
Pribosyltran	PF00156.27	gi|336252200|ref|YP_004595307.1|	-	3e-15	56.1	0.0	5.3e-15	55.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_23	PF13384.6	gi|336252200|ref|YP_004595307.1|	-	0.00014	21.5	0.0	0.0023	17.6	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_7	PF02796.15	gi|336252200|ref|YP_004595307.1|	-	0.0026	17.8	0.0	0.0056	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_38	PF13936.6	gi|336252200|ref|YP_004595307.1|	-	0.011	15.5	0.3	0.38	10.6	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336252200|ref|YP_004595307.1|	-	0.012	15.5	0.2	0.091	12.7	0.1	2.3	2	0	0	2	2	2	0	HTH	domain
Sigma70_r4	PF04545.16	gi|336252200|ref|YP_004595307.1|	-	0.024	14.1	0.1	0.048	13.2	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336252200|ref|YP_004595307.1|	-	0.027	14.0	0.0	0.11	12.1	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252200|ref|YP_004595307.1|	-	0.053	13.4	0.0	0.31	11.0	0.0	2.1	2	0	0	2	2	2	0	MarR	family
PRTase_2	PF15609.6	gi|336252200|ref|YP_004595307.1|	-	0.074	12.5	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Phosphoribosyl	transferase
GerE	PF00196.19	gi|336252200|ref|YP_004595307.1|	-	0.12	12.0	0.0	0.26	10.8	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
UPRTase	PF14681.6	gi|336252200|ref|YP_004595307.1|	-	0.15	11.5	0.0	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
CENP-B_N	PF04218.13	gi|336252200|ref|YP_004595307.1|	-	0.16	11.6	0.2	0.5	10.0	0.0	1.8	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|336252200|ref|YP_004595307.1|	-	0.16	11.9	0.0	0.38	10.7	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_3	PF01381.22	gi|336252200|ref|YP_004595307.1|	-	0.17	12.0	0.1	0.64	10.1	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix
Hydrolase_3	PF08282.12	gi|336252201|ref|YP_004595308.1|	-	2.2e-11	44.0	0.0	9.4e-05	22.3	0.0	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336252201|ref|YP_004595308.1|	-	0.0019	18.6	4.2	2.1	8.7	0.1	3.6	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252201|ref|YP_004595308.1|	-	0.0089	16.3	0.1	0.032	14.5	0.1	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HTH_10	PF04967.12	gi|336252202|ref|YP_004595309.1|	-	4.9e-19	67.9	0.2	8.6e-19	67.1	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252202|ref|YP_004595309.1|	-	3.4e-08	33.5	7.6	5.5e-08	32.8	7.6	1.4	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
UPF0122	PF04297.14	gi|336252202|ref|YP_004595309.1|	-	0.0014	18.8	0.0	0.0031	17.7	0.0	1.5	1	0	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Sigma70_r4	PF04545.16	gi|336252202|ref|YP_004595309.1|	-	0.0022	17.5	0.3	0.0056	16.2	0.3	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336252202|ref|YP_004595309.1|	-	0.021	14.7	0.2	0.07	13.0	0.0	2.0	2	0	0	2	2	2	0	MarR	family
HTH_30	PF13556.6	gi|336252202|ref|YP_004595309.1|	-	0.021	14.6	0.1	0.31	10.9	0.1	2.6	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252202|ref|YP_004595309.1|	-	0.022	14.3	0.2	0.051	13.1	0.1	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r3	PF04539.16	gi|336252202|ref|YP_004595309.1|	-	0.028	14.5	1.1	0.028	14.5	1.1	2.0	2	0	0	2	2	2	0	Sigma-70	region	3
HTH_11	PF08279.12	gi|336252202|ref|YP_004595309.1|	-	0.053	13.5	0.1	0.69	9.9	0.0	2.5	2	0	0	2	2	2	0	HTH	domain
HTH_20	PF12840.7	gi|336252202|ref|YP_004595309.1|	-	0.065	13.3	0.3	0.24	11.5	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF4250	PF14056.6	gi|336252202|ref|YP_004595309.1|	-	0.18	11.8	0.4	0.88	9.6	0.1	2.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4250)
HAD_2	PF13419.6	gi|336252203|ref|YP_004595310.1|	-	1.2e-20	74.3	0.0	4.3e-19	69.3	0.0	2.1	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252203|ref|YP_004595310.1|	-	8.7e-12	45.8	1.6	2.3e-08	34.6	0.2	2.2	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336252203|ref|YP_004595310.1|	-	7.8e-07	29.7	0.5	1.1e-06	29.3	0.5	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252203|ref|YP_004595310.1|	-	1.2e-06	28.5	0.0	2.6e-06	27.4	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Acid_PPase	PF12689.7	gi|336252203|ref|YP_004595310.1|	-	0.03	14.2	0.0	0.28	11.0	0.0	2.1	1	1	0	1	1	1	0	Acid	Phosphatase
Pantoate_transf	PF02548.15	gi|336252205|ref|YP_004595312.1|	-	3.5e-104	347.8	0.9	4.3e-104	347.5	0.9	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|336252205|ref|YP_004595312.1|	-	9.4e-06	25.2	1.8	1.4e-05	24.6	1.6	1.4	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
DUF2244	PF10003.9	gi|336252206|ref|YP_004595313.1|	-	0.04	13.6	1.7	0.046	13.4	1.7	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Tetraspanin	PF00335.20	gi|336252206|ref|YP_004595313.1|	-	0.089	12.5	1.3	0.12	12.1	1.3	1.3	1	0	0	1	1	1	0	Tetraspanin	family
DUF4342	PF14242.6	gi|336252206|ref|YP_004595313.1|	-	3.7	7.6	6.6	7	6.7	2.5	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4342)
UbiA	PF01040.18	gi|336252207|ref|YP_004595314.1|	-	0.001	18.4	0.8	0.0012	18.2	0.8	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Phage_holin_3_6	PF07332.11	gi|336252207|ref|YP_004595314.1|	-	0.034	14.2	1.2	0.052	13.6	1.2	1.3	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Abhydrolase_6	PF12697.7	gi|336252208|ref|YP_004595315.1|	-	9.1e-20	72.2	9.1	1.1e-19	71.9	9.1	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336252208|ref|YP_004595315.1|	-	5.5e-14	52.4	1.1	1.5e-07	31.3	0.4	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336252208|ref|YP_004595315.1|	-	3.1e-12	46.3	0.7	6.6e-12	45.2	0.7	1.5	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|336252208|ref|YP_004595315.1|	-	0.00027	21.0	0.0	0.00063	19.8	0.0	1.7	1	0	0	1	1	1	1	TAP-like	protein
Esterase	PF00756.20	gi|336252208|ref|YP_004595315.1|	-	0.036	13.7	0.0	0.079	12.6	0.0	1.7	1	1	0	1	1	1	0	Putative	esterase
NitrOD2	PF18550.1	gi|336252208|ref|YP_004595315.1|	-	0.065	13.4	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	Nitrososphaera	output	domain	2
Thioesterase	PF00975.20	gi|336252208|ref|YP_004595315.1|	-	0.082	13.0	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Thioesterase	domain
FAD_binding_4	PF01565.23	gi|336252208|ref|YP_004595315.1|	-	0.083	12.6	0.2	0.47	10.2	0.1	1.9	1	1	1	2	2	2	0	FAD	binding	domain
NYN	PF01936.18	gi|336252209|ref|YP_004595316.1|	-	1.9e-18	67.3	0.0	2.2e-18	67.1	0.0	1.0	1	0	0	1	1	1	1	NYN	domain
CoA_binding_2	PF13380.6	gi|336252209|ref|YP_004595316.1|	-	0.06	13.8	0.1	4.9	7.7	0.0	2.0	1	1	1	2	2	2	0	CoA	binding	domain
ADH_zinc_N	PF00107.26	gi|336252209|ref|YP_004595316.1|	-	0.13	12.3	0.3	0.26	11.2	0.3	1.6	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
Peptidase_S8	PF00082.22	gi|336252210|ref|YP_004595317.1|	-	1.6e-48	165.5	11.7	2.6e-48	164.8	11.7	1.3	1	0	0	1	1	1	1	Subtilase	family
GCV_T	PF01571.21	gi|336252211|ref|YP_004595318.1|	-	1e-80	270.9	0.0	1.3e-80	270.5	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|336252211|ref|YP_004595318.1|	-	1.5e-21	76.1	0.1	3e-21	75.1	0.1	1.5	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
SoxG	PF04268.12	gi|336252211|ref|YP_004595318.1|	-	0.16	12.1	0.4	3.8	7.7	0.1	2.2	2	0	0	2	2	2	0	Sarcosine	oxidase,	gamma	subunit	family
GCV_H	PF01597.19	gi|336252212|ref|YP_004595319.1|	-	6.1e-44	148.8	0.0	6.7e-44	148.7	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|336252212|ref|YP_004595319.1|	-	0.0071	16.1	0.2	0.013	15.3	0.2	1.4	1	0	0	1	1	1	1	Biotin-requiring	enzyme
RnfC_N	PF13375.6	gi|336252212|ref|YP_004595319.1|	-	0.16	12.0	0.0	0.23	11.5	0.0	1.2	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
GIDE	PF12483.8	gi|336252213|ref|YP_004595320.1|	-	4.1e-10	39.3	0.0	7.2e-10	38.5	0.0	1.3	1	0	0	1	1	1	1	E3	Ubiquitin	ligase
HTH_31	PF13560.6	gi|336252215|ref|YP_004595322.1|	-	1.6e-09	38.0	0.2	3.9e-09	36.7	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|336252215|ref|YP_004595322.1|	-	1.2e-08	34.8	0.0	3.3e-08	33.4	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.7	gi|336252215|ref|YP_004595322.1|	-	3.1e-06	27.1	0.0	7.8e-06	25.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252215|ref|YP_004595322.1|	-	0.024	14.2	0.0	0.12	11.9	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252215|ref|YP_004595322.1|	-	0.032	14.1	0.0	0.08	12.8	0.0	1.7	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|336252215|ref|YP_004595322.1|	-	0.067	13.2	0.0	0.19	11.7	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
YdaS_antitoxin	PF15943.5	gi|336252215|ref|YP_004595322.1|	-	0.07	13.0	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_26	PF13443.6	gi|336252215|ref|YP_004595322.1|	-	0.085	13.3	0.0	0.21	12.1	0.0	1.7	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
MoCF_biosynth	PF00994.24	gi|336252216|ref|YP_004595323.1|	-	1.6e-29	102.4	0.1	2.5e-29	101.8	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
DUF5132	PF17195.4	gi|336252216|ref|YP_004595323.1|	-	6.3	7.0	7.7	15	5.8	0.9	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF5132)
SBP_bac_8	PF13416.6	gi|336252217|ref|YP_004595324.1|	-	2.1e-15	57.3	0.1	2.8e-15	56.9	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|336252217|ref|YP_004595324.1|	-	1.2e-13	51.1	0.0	1.7e-13	50.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336252217|ref|YP_004595324.1|	-	8.1e-11	42.4	0.2	1.2e-10	41.9	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|336252217|ref|YP_004595324.1|	-	4.5e-08	33.1	0.0	6.9e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
ABC_tran	PF00005.27	gi|336252218|ref|YP_004595325.1|	-	1.4e-34	119.5	0.0	2.6e-34	118.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|336252218|ref|YP_004595325.1|	-	1.8e-15	56.8	2.3	1.6e-14	53.8	0.2	3.0	1	1	1	2	2	2	2	TOBE	domain
AAA_21	PF13304.6	gi|336252218|ref|YP_004595325.1|	-	2.2e-07	31.0	0.2	0.0015	18.4	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|336252218|ref|YP_004595325.1|	-	0.0056	17.1	0.1	0.0099	16.3	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336252218|ref|YP_004595325.1|	-	0.0057	16.9	0.8	0.028	14.7	0.7	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336252218|ref|YP_004595325.1|	-	0.0059	16.1	0.0	0.34	10.3	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|336252218|ref|YP_004595325.1|	-	0.012	15.5	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|336252218|ref|YP_004595325.1|	-	0.015	15.1	0.0	0.035	13.8	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
G-alpha	PF00503.20	gi|336252218|ref|YP_004595325.1|	-	0.028	13.6	0.0	0.033	13.4	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_30	PF13604.6	gi|336252218|ref|YP_004595325.1|	-	0.059	13.1	0.4	0.2	11.4	0.0	2.0	3	0	0	3	3	3	0	AAA	domain
AAA_24	PF13479.6	gi|336252218|ref|YP_004595325.1|	-	0.094	12.4	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336252218|ref|YP_004595325.1|	-	0.098	12.8	0.1	0.21	11.8	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|336252218|ref|YP_004595325.1|	-	0.11	13.1	0.1	0.31	11.6	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336252218|ref|YP_004595325.1|	-	0.11	12.9	1.0	1.3	9.5	1.0	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|336252218|ref|YP_004595325.1|	-	0.18	11.7	0.1	0.31	11.0	0.1	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
BPD_transp_1	PF00528.22	gi|336252219|ref|YP_004595326.1|	-	1.1e-13	51.3	15.7	1.1e-13	51.3	15.7	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336252220|ref|YP_004595327.1|	-	1.6e-16	60.6	15.9	1.6e-16	60.6	15.9	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3439	PF11921.8	gi|336252220|ref|YP_004595327.1|	-	0.042	13.8	0.3	0.092	12.7	0.3	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3439)
DUF1129	PF06570.11	gi|336252220|ref|YP_004595327.1|	-	0.64	9.5	4.4	1	8.8	0.1	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
EamA	PF00892.20	gi|336252221|ref|YP_004595328.1|	-	7.5e-07	29.4	22.8	8.3e-07	29.2	22.8	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
TMEM234	PF10639.9	gi|336252221|ref|YP_004595328.1|	-	0.017	15.1	4.0	0.017	15.1	4.0	1.4	1	1	0	1	1	1	0	Putative	transmembrane	family	234
PNTB_4TM	PF12769.7	gi|336252221|ref|YP_004595328.1|	-	0.99	9.9	14.5	6.4	7.3	0.3	3.3	2	1	1	3	3	3	0	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
ABC2_membrane_5	PF13346.6	gi|336252221|ref|YP_004595328.1|	-	2.3	7.7	11.5	1.5	8.4	10.2	1.4	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
KH_7	PF17214.3	gi|336252222|ref|YP_004595329.1|	-	3.7e-33	113.3	1.0	2.2e-29	101.2	0.1	2.9	3	0	0	3	3	3	2	KH	domain
Beta-Casp	PF10996.8	gi|336252222|ref|YP_004595329.1|	-	5.4e-22	78.2	0.0	1.2e-21	77.0	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|336252222|ref|YP_004595329.1|	-	7.2e-17	61.1	0.0	1.9e-16	59.7	0.0	1.8	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|336252222|ref|YP_004595329.1|	-	1.6e-14	54.3	3.1	5.8e-14	52.6	3.1	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|336252222|ref|YP_004595329.1|	-	1.9e-12	47.0	0.0	3.4e-12	46.2	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|336252222|ref|YP_004595329.1|	-	1.4e-09	37.7	0.1	2.6e-09	36.9	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|336252222|ref|YP_004595329.1|	-	1.7e-07	31.0	0.1	1.6e-06	27.9	0.0	2.3	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.6	gi|336252222|ref|YP_004595329.1|	-	6.1e-05	23.0	0.1	0.00023	21.1	0.0	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.6	gi|336252222|ref|YP_004595329.1|	-	0.059	13.3	0.1	0.14	12.1	0.1	1.6	1	0	0	1	1	1	0	KH	domain
KH_1	PF00013.29	gi|336252222|ref|YP_004595329.1|	-	0.084	12.7	0.0	0.32	10.9	0.0	2.0	1	0	0	1	1	1	0	KH	domain
SAICAR_synt	PF01259.18	gi|336252224|ref|YP_004595331.1|	-	0.043	13.4	0.3	0.055	13.1	0.3	1.1	1	0	0	1	1	1	0	SAICAR	synthetase
Spt20	PF12090.8	gi|336252224|ref|YP_004595331.1|	-	0.15	11.6	12.9	0.24	11.0	12.9	1.3	1	0	0	1	1	1	0	Spt20	family
Presenilin	PF01080.17	gi|336252224|ref|YP_004595331.1|	-	1.8	7.3	6.3	2.1	7.0	6.3	1.1	1	0	0	1	1	1	0	Presenilin
TAT_signal	PF10518.9	gi|336252224|ref|YP_004595331.1|	-	2.6	8.0	8.5	0.15	11.9	2.2	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DivIC	PF04977.15	gi|336252224|ref|YP_004595331.1|	-	7.1	6.5	12.3	1.3	8.9	6.9	2.1	2	0	0	2	2	2	0	Septum	formation	initiator
NucS	PF01939.16	gi|336252225|ref|YP_004595332.1|	-	7.3e-70	234.9	0.0	8.4e-70	234.7	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	NucS
YhcG_C	PF06250.11	gi|336252225|ref|YP_004595332.1|	-	0.0083	16.0	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	YhcG	PDDEXK	nuclease	domain
PBP	PF01161.20	gi|336252226|ref|YP_004595333.1|	-	3.1e-33	114.9	0.2	3.6e-33	114.7	0.2	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Calreticulin	PF00262.18	gi|336252226|ref|YP_004595333.1|	-	5.5	5.7	8.7	7.2	5.3	8.7	1.2	1	0	0	1	1	1	0	Calreticulin	family
Acetyltransf_1	PF00583.25	gi|336252227|ref|YP_004595334.1|	-	1.7e-15	57.2	0.2	2.3e-15	56.8	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336252227|ref|YP_004595334.1|	-	2.2e-09	37.3	0.1	4.6e-09	36.3	0.1	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336252227|ref|YP_004595334.1|	-	7.9e-09	35.4	0.1	1.3e-08	34.7	0.1	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_7	PF13508.7	gi|336252227|ref|YP_004595334.1|	-	1.4e-08	35.0	0.0	2.2e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336252227|ref|YP_004595334.1|	-	0.00027	21.1	0.0	0.00068	19.8	0.0	1.7	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336252227|ref|YP_004595334.1|	-	0.00031	20.8	1.3	0.0019	18.3	1.3	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336252227|ref|YP_004595334.1|	-	0.018	15.1	0.0	0.03	14.4	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.6	gi|336252227|ref|YP_004595334.1|	-	0.022	14.4	1.5	0.074	12.7	0.2	2.1	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
MutS_V	PF00488.21	gi|336252228|ref|YP_004595335.1|	-	2.1e-78	262.7	0.2	3.2e-78	262.1	0.2	1.3	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|336252228|ref|YP_004595335.1|	-	1.6e-41	142.7	3.0	2.9e-41	141.8	3.0	1.4	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|336252228|ref|YP_004595335.1|	-	2.9e-36	124.1	0.0	5.8e-36	123.2	0.0	1.5	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.18	gi|336252228|ref|YP_004595335.1|	-	2e-32	111.4	0.1	5.8e-32	109.9	0.1	1.9	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|336252228|ref|YP_004595335.1|	-	3.9e-10	40.2	0.0	2.4e-09	37.6	0.0	2.3	3	0	0	3	3	3	1	MutS	domain	II
PLU-1	PF08429.11	gi|336252228|ref|YP_004595335.1|	-	0.015	14.5	0.0	0.038	13.2	0.0	1.6	1	1	0	1	1	1	0	PLU-1-like	protein
AAA_14	PF13173.6	gi|336252228|ref|YP_004595335.1|	-	0.029	14.4	0.0	0.12	12.5	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|336252228|ref|YP_004595335.1|	-	0.082	12.5	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|336252228|ref|YP_004595335.1|	-	0.17	12.3	1.2	0.43	11.1	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|336252228|ref|YP_004595335.1|	-	0.2	11.4	0.0	0.55	10.0	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
HTH_20	PF12840.7	gi|336252229|ref|YP_004595336.1|	-	1.8e-18	66.4	4.6	9.9e-10	38.3	1.7	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252229|ref|YP_004595336.1|	-	4.5e-16	58.4	0.0	4.1e-10	39.4	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|336252229|ref|YP_004595336.1|	-	2.3e-14	52.7	0.0	2.4e-06	27.0	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252229|ref|YP_004595336.1|	-	2.9e-11	43.1	4.1	1.3e-07	31.3	0.3	2.8	3	0	0	3	3	2	2	MarR	family
MarR	PF01047.22	gi|336252229|ref|YP_004595336.1|	-	7.7e-11	41.8	0.0	1.3e-06	28.2	0.0	2.6	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.10	gi|336252229|ref|YP_004595336.1|	-	3.6e-09	36.3	0.1	0.00059	19.6	0.0	2.5	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336252229|ref|YP_004595336.1|	-	1.2e-07	31.8	0.0	0.00015	21.9	0.0	2.6	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Penicillinase_R	PF03965.16	gi|336252229|ref|YP_004595336.1|	-	4.7e-07	30.2	0.0	0.00068	20.0	0.0	2.4	2	0	0	2	2	2	2	Penicillinase	repressor
HTH_11	PF08279.12	gi|336252229|ref|YP_004595336.1|	-	2.8e-06	27.2	0.0	0.071	13.1	0.0	2.4	2	0	0	2	2	2	2	HTH	domain
TrmB	PF01978.19	gi|336252229|ref|YP_004595336.1|	-	9.3e-06	25.4	0.0	0.0017	18.2	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|336252229|ref|YP_004595336.1|	-	7.2e-05	22.7	0.4	0.0051	16.8	0.0	2.4	1	1	1	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_12	PF08461.10	gi|336252229|ref|YP_004595336.1|	-	0.00022	21.1	0.1	0.63	10.0	0.0	2.6	2	0	0	2	2	2	2	Ribonuclease	R	winged-helix	domain
HTH_DeoR	PF08220.12	gi|336252229|ref|YP_004595336.1|	-	0.00061	19.5	0.1	0.095	12.5	0.0	2.4	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336252229|ref|YP_004595336.1|	-	0.00086	19.8	0.2	0.066	13.7	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|336252229|ref|YP_004595336.1|	-	0.0014	18.2	0.1	1	9.0	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.6	gi|336252229|ref|YP_004595336.1|	-	0.0034	17.1	0.0	0.14	12.0	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
RP-C	PF03428.13	gi|336252229|ref|YP_004595336.1|	-	0.0036	17.0	0.1	1.5	8.5	0.0	2.3	1	1	0	2	2	2	1	Replication	protein	C	N-terminal	domain
FUR	PF01475.19	gi|336252229|ref|YP_004595336.1|	-	0.0041	17.3	0.0	0.01	16.0	0.0	1.6	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
Rrf2	PF02082.20	gi|336252229|ref|YP_004595336.1|	-	0.0046	17.3	0.0	0.92	9.9	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
Apolipoprotein	PF01442.18	gi|336252229|ref|YP_004595336.1|	-	0.0085	16.0	5.5	0.0085	16.0	5.5	1.8	2	0	0	2	2	2	1	Apolipoprotein	A1/A4/E	domain
HTH_29	PF13551.6	gi|336252229|ref|YP_004595336.1|	-	0.024	14.7	0.1	10	6.2	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_1	PF00126.27	gi|336252229|ref|YP_004595336.1|	-	0.036	14.0	0.1	1.1	9.3	0.0	3.0	3	0	0	3	3	3	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
B-block_TFIIIC	PF04182.12	gi|336252229|ref|YP_004595336.1|	-	0.037	14.2	0.0	3.3	7.9	0.0	2.4	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
DUF2250	PF10007.9	gi|336252229|ref|YP_004595336.1|	-	0.042	14.0	0.0	7.4	6.8	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
LexA_DNA_bind	PF01726.16	gi|336252229|ref|YP_004595336.1|	-	0.06	13.1	0.0	2.1	8.2	0.0	2.4	2	0	0	2	2	2	0	LexA	DNA	binding	domain
MerR_1	PF13411.6	gi|336252229|ref|YP_004595336.1|	-	0.071	13.2	0.0	0.88	9.7	0.0	2.2	2	0	0	2	2	2	0	MerR	HTH	family	regulatory	protein
BLACT_WH	PF17778.1	gi|336252229|ref|YP_004595336.1|	-	0.082	12.9	6.2	0.48	10.4	0.0	3.3	3	0	0	3	3	3	0	Beta-lactamase	associated	winged	helix	domain
DUF2300	PF10062.9	gi|336252229|ref|YP_004595336.1|	-	0.14	12.2	0.0	0.28	11.3	0.0	1.5	1	0	0	1	1	1	0	Predicted	secreted	protein	(DUF2300)
Cdc6_C	PF09079.11	gi|336252229|ref|YP_004595336.1|	-	0.16	11.9	0.1	23	5.1	0.0	2.4	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
DprA_WH	PF17782.1	gi|336252229|ref|YP_004595336.1|	-	8.6	6.6	11.9	0.1	12.7	2.0	3.0	4	0	0	4	4	2	0	DprA	winged	helix	domain
zf-CHY	PF05495.12	gi|336252230|ref|YP_004595337.1|	-	7.3e-13	48.8	5.7	1e-12	48.3	5.7	1.2	1	0	0	1	1	1	1	CHY	zinc	finger
C1_2	PF03107.16	gi|336252230|ref|YP_004595337.1|	-	0.0019	18.5	0.4	0.0019	18.5	0.4	2.4	1	1	1	2	2	2	1	C1	domain
DZR	PF12773.7	gi|336252230|ref|YP_004595337.1|	-	0.0073	16.3	6.9	0.009	16.0	4.3	2.2	1	1	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|336252230|ref|YP_004595337.1|	-	0.1	12.6	0.8	0.1	12.6	0.8	1.8	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-HIT	PF04438.16	gi|336252230|ref|YP_004595337.1|	-	0.23	11.4	7.8	0.22	11.4	3.6	2.8	2	1	0	2	2	2	0	HIT	zinc	finger
GvpO	PF05800.11	gi|336252231|ref|YP_004595338.1|	-	1.8e-28	98.4	1.6	4.1e-28	97.2	1.6	1.6	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpO
zf-SAP30	PF13866.6	gi|336252231|ref|YP_004595338.1|	-	0.15	12.2	0.4	0.28	11.3	0.4	1.4	1	0	0	1	1	1	0	SAP30	zinc-finger
AAA_5	PF07728.14	gi|336252232|ref|YP_004595339.1|	-	4.2e-16	59.2	0.0	1.5e-14	54.2	0.0	2.3	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.6	gi|336252232|ref|YP_004595339.1|	-	2.3e-05	24.1	0.3	7.4e-05	22.4	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|336252232|ref|YP_004595339.1|	-	5.3e-05	23.6	0.0	9.8e-05	22.8	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|336252232|ref|YP_004595339.1|	-	0.00025	20.8	0.0	0.00048	19.9	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_3	PF07726.11	gi|336252232|ref|YP_004595339.1|	-	0.0051	16.7	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.16	gi|336252232|ref|YP_004595339.1|	-	0.0065	16.0	0.0	0.015	14.8	0.0	1.6	1	0	0	1	1	1	1	PhoH-like	protein
Sigma54_activat	PF00158.26	gi|336252232|ref|YP_004595339.1|	-	0.0077	15.9	0.0	1.3	8.7	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_16	PF13191.6	gi|336252232|ref|YP_004595339.1|	-	0.027	14.9	0.0	0.058	13.8	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
Sigma54_activ_2	PF14532.6	gi|336252232|ref|YP_004595339.1|	-	0.03	14.4	0.0	0.068	13.3	0.0	1.6	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|336252232|ref|YP_004595339.1|	-	0.034	13.7	0.0	0.059	12.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|336252232|ref|YP_004595339.1|	-	0.035	14.3	0.0	0.11	12.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
IPT	PF01745.16	gi|336252232|ref|YP_004595339.1|	-	0.038	13.4	0.0	0.058	12.8	0.0	1.2	1	0	0	1	1	1	0	Isopentenyl	transferase
Zeta_toxin	PF06414.12	gi|336252232|ref|YP_004595339.1|	-	0.044	13.1	0.1	0.47	9.7	0.0	2.6	3	0	0	3	3	3	0	Zeta	toxin
ATPase_2	PF01637.18	gi|336252232|ref|YP_004595339.1|	-	0.048	13.6	0.0	0.11	12.4	0.0	1.5	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|336252232|ref|YP_004595339.1|	-	0.12	12.9	0.0	0.19	12.3	0.0	1.6	1	1	0	1	1	1	0	ABC	transporter
AAA_9	PF12781.7	gi|336252232|ref|YP_004595339.1|	-	0.14	11.2	0.0	0.22	10.6	0.0	1.2	1	0	0	1	1	1	0	ATP-binding	dynein	motor	region
Gas_vesicle	PF00741.18	gi|336252233|ref|YP_004595340.1|	-	9.8e-17	60.8	6.7	1.3e-16	60.4	6.7	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
GvpL_GvpF	PF06386.11	gi|336252234|ref|YP_004595341.1|	-	7.7e-45	153.7	2.2	1e-25	91.1	0.3	2.0	1	1	1	2	2	2	2	Gas	vesicle	synthesis	protein	GvpL/GvpF
GvpG	PF05120.12	gi|336252235|ref|YP_004595342.1|	-	7.6e-06	25.8	2.0	9.2e-06	25.6	2.0	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	G
THOC7	PF05615.13	gi|336252235|ref|YP_004595342.1|	-	0.00056	20.2	2.1	0.00064	20.0	2.1	1.1	1	0	0	1	1	1	1	Tho	complex	subunit	7
HSP20	PF00011.21	gi|336252236|ref|YP_004595343.1|	-	0.00037	20.6	0.2	0.13	12.4	0.0	2.4	1	1	1	2	2	2	2	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|336252236|ref|YP_004595343.1|	-	0.003	17.1	0.2	0.02	14.4	0.2	2.1	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
MscS_TM	PF12794.7	gi|336252237|ref|YP_004595344.1|	-	6.6	5.5	11.0	10	4.9	11.0	1.2	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
Gas_vesicle	PF00741.18	gi|336252238|ref|YP_004595345.1|	-	8.2e-14	51.5	4.4	1.5e-13	50.7	4.4	1.4	1	0	0	1	1	1	1	Gas	vesicle	protein
GvpK	PF05121.12	gi|336252239|ref|YP_004595346.1|	-	1.8e-24	85.6	6.8	2.3e-24	85.3	6.8	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	K
Jnk-SapK_ap_N	PF09744.9	gi|336252239|ref|YP_004595346.1|	-	0.0014	18.9	0.7	0.0018	18.6	0.7	1.1	1	0	0	1	1	1	1	JNK_SAPK-associated	protein-1
DUF2730	PF10805.8	gi|336252239|ref|YP_004595346.1|	-	0.026	14.6	0.1	0.033	14.3	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Glu-tRNAGln	PF02686.15	gi|336252239|ref|YP_004595346.1|	-	0.037	14.3	1.1	0.057	13.7	1.1	1.4	1	0	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
DLP_helical	PF18709.1	gi|336252239|ref|YP_004595346.1|	-	0.044	13.0	0.3	0.05	12.8	0.3	1.0	1	0	0	1	1	1	0	Dynamin-like	helical	domain
Csm1_N	PF18504.1	gi|336252239|ref|YP_004595346.1|	-	0.046	14.1	0.7	0.069	13.5	0.7	1.3	1	0	0	1	1	1	0	Csm1	N-terminal	domain
Rx_N	PF18052.1	gi|336252239|ref|YP_004595346.1|	-	0.059	13.6	1.4	0.073	13.4	1.4	1.1	1	0	0	1	1	1	0	Rx	N-terminal	domain
FlxA	PF14282.6	gi|336252239|ref|YP_004595346.1|	-	0.061	13.3	0.0	0.074	13.1	0.0	1.2	1	0	0	1	1	1	0	FlxA-like	protein
FlaC_arch	PF05377.11	gi|336252239|ref|YP_004595346.1|	-	0.099	13.1	0.2	0.21	12.0	0.2	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TetR_C_24	PF17932.1	gi|336252239|ref|YP_004595346.1|	-	0.13	12.6	1.4	0.2	12.0	1.3	1.3	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MobC	PF05713.11	gi|336252239|ref|YP_004595346.1|	-	0.15	12.6	0.1	0.3	11.6	0.1	1.6	1	0	0	1	1	1	0	Bacterial	mobilisation	protein	(MobC)
GvpL_GvpF	PF06386.11	gi|336252240|ref|YP_004595347.1|	-	4.4e-80	269.1	0.7	5.3e-80	268.9	0.7	1.1	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
Gas_vesicle	PF00741.18	gi|336252241|ref|YP_004595348.1|	-	7.1e-13	48.5	9.7	8.8e-13	48.2	9.7	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein
zf-CCHC_2	PF13696.6	gi|336252242|ref|YP_004595349.1|	-	0.086	12.7	1.8	0.12	12.2	0.2	1.9	2	0	0	2	2	2	0	Zinc	knuckle
Kp4	PF09044.10	gi|336252242|ref|YP_004595349.1|	-	0.092	12.8	0.2	0.11	12.6	0.2	1.1	1	0	0	1	1	1	0	Kp4
Lar_restr_allev	PF14354.6	gi|336252242|ref|YP_004595349.1|	-	0.11	12.9	1.8	2	8.8	0.1	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
MqsA_antitoxin	PF15731.5	gi|336252242|ref|YP_004595349.1|	-	0.14	12.3	0.4	0.17	12.0	0.4	1.0	1	0	0	1	1	1	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
ABATE	PF07336.11	gi|336252245|ref|YP_004595352.1|	-	0.0056	17.3	2.3	0.0084	16.8	2.3	1.3	1	0	0	1	1	1	1	Putative	stress-induced	transcription	regulator
DUF5346	PF17281.2	gi|336252245|ref|YP_004595352.1|	-	0.021	14.9	0.3	0.081	13.0	0.6	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5346)
Molybdopterin	PF00384.22	gi|336252246|ref|YP_004595353.1|	-	3e-75	253.8	0.0	3.8e-75	253.5	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|336252246|ref|YP_004595353.1|	-	5.6e-29	100.4	0.1	1.3e-28	99.3	0.1	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|336252246|ref|YP_004595353.1|	-	3.4e-14	52.6	0.6	8.3e-14	51.3	0.6	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
CSD	PF00313.22	gi|336252247|ref|YP_004595354.1|	-	4.6e-19	68.0	0.4	5e-19	67.9	0.4	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|336252247|ref|YP_004595354.1|	-	0.081	12.6	2.7	0.11	12.2	2.7	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
S1-like	PF14444.6	gi|336252247|ref|YP_004595354.1|	-	0.15	12.0	1.9	0.36	10.8	1.9	1.7	1	1	0	1	1	1	0	S1-like
Glyoxalase	PF00903.25	gi|336252248|ref|YP_004595355.1|	-	1.6e-10	41.3	0.5	3.1e-10	40.4	0.5	1.5	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|336252248|ref|YP_004595355.1|	-	1.4e-06	29.0	0.3	2e-06	28.6	0.3	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|336252248|ref|YP_004595355.1|	-	0.00046	20.1	0.0	0.0018	18.2	0.0	1.8	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|336252248|ref|YP_004595355.1|	-	0.0077	16.5	0.1	0.011	16.0	0.1	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
NMT1	PF09084.11	gi|336252249|ref|YP_004595356.1|	-	7.7e-33	114.3	0.0	1.3e-32	113.5	0.0	1.4	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|336252249|ref|YP_004595356.1|	-	1.7e-06	27.8	0.2	2.4e-06	27.3	0.2	1.4	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1_2	PF13379.6	gi|336252249|ref|YP_004595356.1|	-	2.1e-05	24.4	0.1	0.00044	20.0	0.1	2.4	1	1	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.11	gi|336252250|ref|YP_004595357.1|	-	1.1e-08	35.3	0.0	1.7e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
SBP_bac_3	PF00497.20	gi|336252250|ref|YP_004595357.1|	-	0.00071	19.1	0.0	0.0011	18.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Phosphonate-bd	PF12974.7	gi|336252250|ref|YP_004595357.1|	-	0.0069	16.0	0.0	0.0096	15.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.11	gi|336252251|ref|YP_004595358.1|	-	4.9e-11	43.0	0.0	8.3e-09	35.7	0.0	3.1	1	1	0	1	1	1	1	NMT1/THI5	like
SBP_bac_3	PF00497.20	gi|336252251|ref|YP_004595358.1|	-	0.0017	17.8	0.0	0.0033	16.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1_2	PF13379.6	gi|336252251|ref|YP_004595358.1|	-	0.0051	16.6	0.0	0.74	9.5	0.0	2.4	2	1	0	2	2	2	2	NMT1-like	family
Cupin_2	PF07883.11	gi|336252252|ref|YP_004595359.1|	-	2.3e-21	75.3	0.8	3e-21	74.9	0.8	1.1	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|336252252|ref|YP_004595359.1|	-	4.5e-07	29.8	0.1	5.6e-07	29.5	0.1	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|336252252|ref|YP_004595359.1|	-	7.9e-06	25.5	0.0	1e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_1	PF00190.22	gi|336252252|ref|YP_004595359.1|	-	4.5e-05	23.1	0.0	5.8e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	Cupin
MannoseP_isomer	PF01050.18	gi|336252252|ref|YP_004595359.1|	-	0.0027	17.6	0.0	0.0035	17.3	0.0	1.2	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_7	PF12973.7	gi|336252252|ref|YP_004595359.1|	-	0.0095	15.8	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
CENP-C_C	PF11699.8	gi|336252252|ref|YP_004595359.1|	-	0.031	14.5	0.0	0.041	14.1	0.0	1.1	1	0	0	1	1	1	0	Mif2/CENP-C	like
EutQ	PF06249.12	gi|336252252|ref|YP_004595359.1|	-	0.051	13.3	0.0	0.066	13.0	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
AraC_binding_2	PF14525.6	gi|336252252|ref|YP_004595359.1|	-	0.052	13.2	0.1	0.056	13.1	0.1	1.1	1	0	0	1	1	1	0	AraC-binding-like	domain
CDO_I	PF05995.12	gi|336252252|ref|YP_004595359.1|	-	0.078	12.3	0.0	0.099	12.0	0.0	1.3	1	0	0	1	1	1	0	Cysteine	dioxygenase	type	I
NMT1	PF09084.11	gi|336252254|ref|YP_004595361.1|	-	4.9e-34	118.2	0.0	7.3e-34	117.6	0.0	1.2	1	0	0	1	1	1	1	NMT1/THI5	like
NMT1_2	PF13379.6	gi|336252254|ref|YP_004595361.1|	-	0.0096	15.6	1.2	0.21	11.2	0.2	3.1	2	1	0	2	2	2	1	NMT1-like	family
TAT_signal	PF10518.9	gi|336252254|ref|YP_004595361.1|	-	0.091	12.6	3.4	0.24	11.3	3.4	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336252254|ref|YP_004595361.1|	-	0.31	10.4	2.6	0.82	9.1	2.6	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_1	PF00528.22	gi|336252255|ref|YP_004595362.1|	-	4.6e-21	75.4	12.7	4.6e-21	75.4	12.7	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336252256|ref|YP_004595363.1|	-	6.5e-18	65.1	10.9	6.5e-18	65.1	10.9	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PC_rep	PF01851.22	gi|336252256|ref|YP_004595363.1|	-	0.92	10.1	3.2	1.1e+02	3.5	0.2	4.0	4	0	0	4	4	4	0	Proteasome/cyclosome	repeat
DUF2070	PF09843.9	gi|336252256|ref|YP_004595363.1|	-	0.99	7.6	5.0	2.7	6.2	5.0	1.6	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
ABC_tran	PF00005.27	gi|336252257|ref|YP_004595364.1|	-	5.5e-30	104.7	0.0	1e-29	103.8	0.0	1.4	2	0	0	2	2	1	1	ABC	transporter
AAA_16	PF13191.6	gi|336252257|ref|YP_004595364.1|	-	2.5e-06	28.0	0.1	4.3e-06	27.2	0.1	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|336252257|ref|YP_004595364.1|	-	7.1e-06	26.0	0.0	0.0047	16.8	0.0	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336252257|ref|YP_004595364.1|	-	0.0003	21.1	0.4	0.0013	19.1	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|336252257|ref|YP_004595364.1|	-	0.00058	19.6	0.1	0.0016	18.2	0.1	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|336252257|ref|YP_004595364.1|	-	0.00074	19.7	0.0	0.0015	18.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336252257|ref|YP_004595364.1|	-	0.0037	17.2	0.0	0.0061	16.5	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
ABC_ATPase	PF09818.9	gi|336252257|ref|YP_004595364.1|	-	0.0048	15.8	0.1	0.69	8.6	0.0	2.4	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.22	gi|336252257|ref|YP_004595364.1|	-	0.012	14.9	0.0	0.022	14.0	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_25	PF13481.6	gi|336252257|ref|YP_004595364.1|	-	0.014	15.0	0.0	0.038	13.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336252257|ref|YP_004595364.1|	-	0.018	15.5	0.1	0.097	13.1	0.1	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|336252257|ref|YP_004595364.1|	-	0.02	14.8	0.1	0.049	13.6	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_29	PF13555.6	gi|336252257|ref|YP_004595364.1|	-	0.023	14.4	0.0	0.042	13.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATPase_2	PF01637.18	gi|336252257|ref|YP_004595364.1|	-	0.026	14.4	0.0	0.051	13.5	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
SMC_N	PF02463.19	gi|336252257|ref|YP_004595364.1|	-	0.035	13.5	0.0	0.86	9.0	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_14	PF13173.6	gi|336252257|ref|YP_004595364.1|	-	0.036	14.1	0.0	0.19	11.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|336252257|ref|YP_004595364.1|	-	0.048	13.9	0.7	0.31	11.3	0.0	2.4	2	1	1	3	3	3	0	AAA	domain
AAA_23	PF13476.6	gi|336252257|ref|YP_004595364.1|	-	0.058	13.9	0.1	0.09	13.3	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|336252257|ref|YP_004595364.1|	-	0.12	12.1	0.0	0.23	11.2	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
PIG-L	PF02585.17	gi|336252257|ref|YP_004595364.1|	-	0.12	13.0	0.0	0.22	12.2	0.0	1.5	1	1	0	1	1	1	0	GlcNAc-PI	de-N-acetylase
Rad17	PF03215.15	gi|336252257|ref|YP_004595364.1|	-	0.14	12.1	0.0	0.22	11.4	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
cobW	PF02492.19	gi|336252257|ref|YP_004595364.1|	-	0.21	11.1	0.1	0.34	10.5	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_7	PF12775.7	gi|336252257|ref|YP_004595364.1|	-	0.25	10.9	0.0	0.51	9.8	0.0	1.5	2	0	0	2	2	1	0	P-loop	containing	dynein	motor	region
PduV-EutP	PF10662.9	gi|336252257|ref|YP_004595364.1|	-	0.25	11.1	0.1	0.43	10.3	0.1	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
NTPase_1	PF03266.15	gi|336252257|ref|YP_004595364.1|	-	0.28	11.1	0.7	4.8	7.1	0.2	2.2	2	0	0	2	2	2	0	NTPase
AAA_15	PF13175.6	gi|336252257|ref|YP_004595364.1|	-	0.32	10.7	0.0	0.46	10.1	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
NMT1	PF09084.11	gi|336252258|ref|YP_004595365.1|	-	6.9e-29	101.3	0.0	9.6e-29	100.9	0.0	1.1	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|336252258|ref|YP_004595365.1|	-	2.1e-06	27.5	0.0	3.4e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
MarR_2	PF12802.7	gi|336252258|ref|YP_004595365.1|	-	0.0032	17.3	3.2	0.028	14.3	1.4	2.8	2	0	0	2	2	2	1	MarR	family
NMT1_2	PF13379.6	gi|336252258|ref|YP_004595365.1|	-	0.027	14.2	0.0	0.054	13.2	0.0	1.5	1	0	0	1	1	1	0	NMT1-like	family
PQQ	PF01011.21	gi|336252260|ref|YP_004595367.1|	-	1.3e-27	94.4	7.3	6.8e-05	22.6	0.1	7.7	7	0	0	7	7	7	5	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|336252260|ref|YP_004595367.1|	-	4.6e-22	78.8	5.5	1.5e-11	44.3	0.0	3.4	2	1	1	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|336252260|ref|YP_004595367.1|	-	2.8e-10	40.4	30.7	0.001	19.5	0.2	7.6	7	1	0	7	7	7	4	PQQ-like	domain
Copper-bind	PF00127.20	gi|336252261|ref|YP_004595368.1|	-	1.7e-09	38.0	0.2	6.1e-08	33.0	0.0	2.9	2	1	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|336252261|ref|YP_004595368.1|	-	0.004	16.9	2.8	0.0073	16.1	2.8	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Gp5_C	PF06715.12	gi|336252261|ref|YP_004595368.1|	-	0.014	15.4	5.3	0.014	15.4	5.3	5.9	5	2	2	7	7	7	0	Gp5	C-terminal	repeat	(3	copies)
PEGA	PF08308.11	gi|336252261|ref|YP_004595368.1|	-	0.36	10.7	0.0	0.36	10.7	0.0	3.6	5	0	0	5	5	5	0	PEGA	domain
Haem_degrading	PF03928.14	gi|336252262|ref|YP_004595369.1|	-	3.6e-34	117.4	0.3	4e-34	117.2	0.3	1.0	1	0	0	1	1	1	1	Haem-degrading
ADH_N	PF08240.12	gi|336252263|ref|YP_004595370.1|	-	2.1e-27	95.1	0.3	3.7e-27	94.4	0.3	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336252263|ref|YP_004595370.1|	-	8.6e-11	41.9	0.0	3.1e-10	40.1	0.0	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.6	gi|336252263|ref|YP_004595370.1|	-	5.5e-10	39.0	0.9	1.5e-09	37.6	0.9	1.8	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
Glu_dehyd_C	PF16912.5	gi|336252263|ref|YP_004595370.1|	-	0.0033	16.9	0.0	0.017	14.6	0.0	2.1	2	0	0	2	2	2	1	Glucose	dehydrogenase	C-terminus
HI0933_like	PF03486.14	gi|336252263|ref|YP_004595370.1|	-	0.0043	15.8	0.1	0.028	13.1	0.1	1.9	2	0	0	2	2	2	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|336252263|ref|YP_004595370.1|	-	0.0065	15.8	0.0	0.011	15.0	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|336252263|ref|YP_004595370.1|	-	0.17	11.1	0.0	0.28	10.4	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
HATPase_c	PF02518.26	gi|336252264|ref|YP_004595371.1|	-	8.9e-30	103.5	0.1	4.3e-29	101.3	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336252264|ref|YP_004595371.1|	-	1.3e-13	51.1	0.0	4e-13	49.5	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
GAF_3	PF13492.6	gi|336252264|ref|YP_004595371.1|	-	2.3e-11	44.2	0.1	6.6e-11	42.7	0.0	1.9	2	0	0	2	2	1	1	GAF	domain
PAS_4	PF08448.10	gi|336252264|ref|YP_004595371.1|	-	7.6e-10	39.0	0.1	2.8e-09	37.2	0.1	2.0	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.26	gi|336252264|ref|YP_004595371.1|	-	1.1e-09	39.0	0.2	2.8e-09	37.7	0.2	1.7	1	0	0	1	1	1	1	GAF	domain
PAS	PF00989.25	gi|336252264|ref|YP_004595371.1|	-	3.1e-09	36.8	0.0	1.1e-08	35.1	0.0	2.0	1	0	0	1	1	1	1	PAS	fold
GAF_2	PF13185.6	gi|336252264|ref|YP_004595371.1|	-	3.4e-09	37.1	1.1	1.3e-08	35.3	1.1	2.1	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.25	gi|336252264|ref|YP_004595371.1|	-	4.4e-09	36.3	5.2	1.5e-08	34.5	0.0	3.8	2	1	1	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|336252264|ref|YP_004595371.1|	-	1.4e-07	31.7	0.1	1.3e-05	25.4	0.0	3.2	3	0	0	3	3	3	1	PAS	fold
HisKA_4TM	PF16926.5	gi|336252264|ref|YP_004595371.1|	-	1.2e-06	28.2	2.6	3e-06	26.9	2.6	1.7	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_5	PF14501.6	gi|336252264|ref|YP_004595371.1|	-	0.00014	21.7	0.0	0.00048	20.0	0.0	1.8	2	0	0	2	2	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336252264|ref|YP_004595371.1|	-	0.0002	21.3	0.0	0.00052	20.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
DUF327	PF03885.13	gi|336252264|ref|YP_004595371.1|	-	0.0017	18.3	3.0	0.28	11.1	0.4	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF327)
Syntaxin-6_N	PF09177.11	gi|336252264|ref|YP_004595371.1|	-	0.022	15.3	0.6	0.022	15.3	0.6	2.7	3	0	0	3	3	2	0	Syntaxin	6,	N-terminal
Tektin	PF03148.14	gi|336252264|ref|YP_004595371.1|	-	0.034	12.9	7.1	0.035	12.9	4.0	2.2	2	0	0	2	2	2	0	Tektin	family
RasGAP_C	PF03836.15	gi|336252264|ref|YP_004595371.1|	-	0.066	13.4	1.9	0.081	13.1	0.2	2.0	2	0	0	2	2	2	0	RasGAP	C-terminus
PAS_8	PF13188.7	gi|336252264|ref|YP_004595371.1|	-	0.098	12.7	0.1	0.41	10.7	0.1	2.1	1	0	0	1	1	1	0	PAS	domain
bZIP_1	PF00170.21	gi|336252264|ref|YP_004595371.1|	-	0.11	12.6	14.6	0.46	10.6	0.2	3.1	3	1	1	4	4	3	0	bZIP	transcription	factor
HATPase_c_3	PF13589.6	gi|336252264|ref|YP_004595371.1|	-	0.11	12.3	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
23S_rRNA_IVP	PF05635.11	gi|336252264|ref|YP_004595371.1|	-	0.2	11.9	2.2	9	6.6	0.3	2.3	2	0	0	2	2	2	0	23S	rRNA-intervening	sequence	protein
Ax_dynein_light	PF10211.9	gi|336252264|ref|YP_004595371.1|	-	0.26	11.2	8.4	4	7.3	3.4	2.5	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Streptin-Immun	PF11083.8	gi|336252264|ref|YP_004595371.1|	-	0.3	11.5	7.3	5.3	7.5	0.3	2.5	2	0	0	2	2	2	0	Lantibiotic	streptin	immunity	protein
HemX	PF04375.14	gi|336252264|ref|YP_004595371.1|	-	0.37	10.0	7.0	0.16	11.3	0.2	2.8	3	0	0	3	3	3	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Fmp27_WPPW	PF10359.9	gi|336252264|ref|YP_004595371.1|	-	0.44	9.3	3.8	0.14	11.0	0.7	1.6	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
OmpH	PF03938.14	gi|336252264|ref|YP_004595371.1|	-	0.5	10.7	11.6	3.1	8.1	2.3	3.2	3	0	0	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Spc7	PF08317.11	gi|336252264|ref|YP_004595371.1|	-	0.51	9.2	8.3	0.18	10.6	2.5	2.4	2	0	0	2	2	2	0	Spc7	kinetochore	protein
DUF5082	PF16888.5	gi|336252264|ref|YP_004595371.1|	-	0.81	10.0	6.7	3.4	8.0	2.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
DUF2205	PF10224.9	gi|336252264|ref|YP_004595371.1|	-	3.7	7.6	9.2	0.58	10.2	4.2	2.2	2	0	0	2	2	1	0	Short	coiled-coil	protein
Exonuc_VII_S	PF02609.16	gi|336252264|ref|YP_004595371.1|	-	4	7.6	9.8	13	6.0	3.6	2.5	2	0	0	2	2	2	0	Exonuclease	VII	small	subunit
UPF0242	PF06785.11	gi|336252264|ref|YP_004595371.1|	-	4.9	7.2	12.2	0.76	9.8	0.7	2.6	3	0	0	3	3	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF3450	PF11932.8	gi|336252264|ref|YP_004595371.1|	-	5.9	6.1	13.1	0.039	13.3	0.5	2.6	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF3450)
Spc24	PF08286.11	gi|336252264|ref|YP_004595371.1|	-	7.8	6.8	7.0	4.2	7.6	1.9	2.5	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
DUF4200	PF13863.6	gi|336252264|ref|YP_004595371.1|	-	8.7	6.8	12.8	1.1	9.6	2.4	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
HNOBA	PF07701.14	gi|336252264|ref|YP_004595371.1|	-	9.6	5.6	8.4	0.45	9.9	0.4	2.3	3	0	0	3	3	2	0	Heme	NO	binding	associated
PGBA_C	PF15437.6	gi|336252264|ref|YP_004595371.1|	-	10	6.6	11.4	26	5.3	4.4	2.4	2	0	0	2	2	2	0	Plasminogen-binding	protein	pgbA	C-terminal
APOC4	PF15119.6	gi|336252265|ref|YP_004595372.1|	-	0.06	13.6	0.1	0.062	13.6	0.1	1.1	1	0	0	1	1	1	0	Apolipoprotein	C4
cobW	PF02492.19	gi|336252267|ref|YP_004595374.1|	-	1.7e-51	174.3	0.0	2.2e-51	173.9	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.14	gi|336252267|ref|YP_004595374.1|	-	1.3e-28	98.7	0.0	2.4e-28	97.9	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
GTP_EFTU	PF00009.27	gi|336252267|ref|YP_004595374.1|	-	0.00028	20.5	0.0	0.084	12.4	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|336252267|ref|YP_004595374.1|	-	0.0028	17.6	0.0	0.4	10.6	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA_16	PF13191.6	gi|336252267|ref|YP_004595374.1|	-	0.0082	16.5	0.0	0.023	15.1	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
T2SSE	PF00437.20	gi|336252267|ref|YP_004595374.1|	-	0.0095	15.0	0.0	0.016	14.3	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_33	PF13671.6	gi|336252267|ref|YP_004595374.1|	-	0.085	13.0	0.0	0.18	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336252267|ref|YP_004595374.1|	-	0.11	12.6	0.0	0.35	11.0	0.0	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
PfaD_N	PF18328.1	gi|336252267|ref|YP_004595374.1|	-	0.17	11.8	0.1	0.44	10.5	0.1	1.7	1	0	0	1	1	1	0	Fatty	acid	synthase	subunit	PfaD	N-terminal	domain
HTH_5	PF01022.20	gi|336252268|ref|YP_004595375.1|	-	3.2e-14	52.5	0.0	7.7e-14	51.3	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|336252268|ref|YP_004595375.1|	-	9.1e-13	48.1	0.2	1.2e-12	47.7	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336252268|ref|YP_004595375.1|	-	8.4e-06	25.6	0.0	1.1e-05	25.2	0.0	1.3	1	1	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|336252268|ref|YP_004595375.1|	-	1.4e-05	24.8	0.3	2.4e-05	24.0	0.3	1.5	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252268|ref|YP_004595375.1|	-	9e-05	22.0	0.0	0.00057	19.4	0.0	2.0	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|336252268|ref|YP_004595375.1|	-	0.00023	21.0	0.2	0.0012	18.7	0.2	1.9	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DprA_WH	PF17782.1	gi|336252268|ref|YP_004595375.1|	-	0.00028	20.9	0.1	0.00052	20.1	0.1	1.4	1	0	0	1	1	1	1	DprA	winged	helix	domain
MarR	PF01047.22	gi|336252268|ref|YP_004595375.1|	-	0.00099	19.0	0.0	0.0014	18.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|336252268|ref|YP_004595375.1|	-	0.0016	18.9	0.1	0.0021	18.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|336252268|ref|YP_004595375.1|	-	0.0021	17.9	0.1	0.003	17.4	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2250	PF10007.9	gi|336252268|ref|YP_004595375.1|	-	0.0041	17.2	0.4	0.025	14.7	0.6	1.8	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_45	PF14947.6	gi|336252268|ref|YP_004595375.1|	-	0.014	15.4	0.0	0.02	14.9	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|336252268|ref|YP_004595375.1|	-	0.032	14.2	0.0	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.20	gi|336252268|ref|YP_004595375.1|	-	0.033	14.5	0.0	0.046	14.1	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
RP-C	PF03428.13	gi|336252268|ref|YP_004595375.1|	-	0.034	13.8	0.0	0.046	13.4	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
PaaX	PF07848.12	gi|336252268|ref|YP_004595375.1|	-	0.062	13.5	0.0	0.09	13.0	0.0	1.2	1	0	0	1	1	1	0	PaaX-like	protein
Fe_dep_repress	PF01325.19	gi|336252268|ref|YP_004595375.1|	-	0.094	12.9	0.0	0.14	12.3	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.6	gi|336252268|ref|YP_004595375.1|	-	0.095	12.7	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|336252272|ref|YP_004595379.1|	-	2.7e-17	62.5	1.0	4.1e-17	61.9	1.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|336252272|ref|YP_004595379.1|	-	1.3e-05	25.6	0.1	9.6e-05	22.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
RTP	PF02334.16	gi|336252272|ref|YP_004595379.1|	-	0.00031	21.4	0.0	0.0004	21.0	0.0	1.3	1	0	0	1	1	1	1	Replication	terminator	protein
DUF1495	PF07381.11	gi|336252272|ref|YP_004595379.1|	-	0.0013	18.5	0.0	0.0019	18.0	0.0	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|336252272|ref|YP_004595379.1|	-	0.028	14.4	0.1	0.046	13.7	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Pyrophosphatase	PF00719.19	gi|336252273|ref|YP_004595380.1|	-	1.3e-51	174.6	1.6	1.4e-51	174.4	1.6	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
AAA_31	PF13614.6	gi|336252274|ref|YP_004595381.1|	-	3e-31	108.7	0.0	4e-31	108.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|336252274|ref|YP_004595381.1|	-	2e-18	66.7	0.0	4.4e-18	65.6	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|336252274|ref|YP_004595381.1|	-	5.7e-09	35.8	0.1	1.3e-08	34.6	0.1	1.6	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|336252274|ref|YP_004595381.1|	-	7.7e-09	35.4	0.4	1.8e-08	34.1	0.1	1.7	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|336252274|ref|YP_004595381.1|	-	1.2e-08	34.5	0.3	1.6e-07	30.8	0.3	2.1	1	1	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|336252274|ref|YP_004595381.1|	-	1.4e-07	31.0	0.9	0.0035	16.7	0.2	3.1	3	0	0	3	3	3	2	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|336252274|ref|YP_004595381.1|	-	0.00014	21.4	0.0	0.00026	20.5	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|336252274|ref|YP_004595381.1|	-	0.00015	21.6	0.0	0.0003	20.6	0.0	1.4	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
MeaB	PF03308.16	gi|336252274|ref|YP_004595381.1|	-	0.0031	16.6	0.1	0.0045	16.0	0.1	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
adh_short_C2	PF13561.6	gi|336252274|ref|YP_004595381.1|	-	0.0049	16.4	0.1	0.01	15.4	0.1	1.5	2	0	0	2	2	2	1	Enoyl-(Acyl	carrier	protein)	reductase
SRP54	PF00448.22	gi|336252274|ref|YP_004595381.1|	-	0.011	15.4	0.1	0.019	14.6	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
VirC1	PF07015.11	gi|336252274|ref|YP_004595381.1|	-	0.014	14.7	0.0	0.022	14.1	0.0	1.2	1	0	0	1	1	1	0	VirC1	protein
Glyco_transf_4	PF13439.6	gi|336252274|ref|YP_004595381.1|	-	0.016	15.2	0.1	0.025	14.6	0.1	1.5	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
Thymidylate_kin	PF02223.17	gi|336252274|ref|YP_004595381.1|	-	0.028	14.1	0.0	0.05	13.3	0.0	1.4	1	0	0	1	1	1	0	Thymidylate	kinase
Glyco_trans_4_4	PF13579.6	gi|336252274|ref|YP_004595381.1|	-	0.064	13.7	4.8	0.24	11.8	4.6	1.9	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
adh_short	PF00106.25	gi|336252274|ref|YP_004595381.1|	-	0.071	12.6	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	short	chain	dehydrogenase
AAA_16	PF13191.6	gi|336252274|ref|YP_004595381.1|	-	0.073	13.5	0.2	0.16	12.4	0.2	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
ATP_bind_1	PF03029.17	gi|336252274|ref|YP_004595381.1|	-	0.12	12.1	0.0	0.4	10.4	0.0	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_18	PF13238.6	gi|336252274|ref|YP_004595381.1|	-	0.12	12.9	0.0	0.21	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|336252274|ref|YP_004595381.1|	-	0.18	10.7	0.0	0.25	10.2	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Phosphodiest	PF01663.22	gi|336252276|ref|YP_004595383.1|	-	1.8e-60	205.4	0.1	2.1e-60	205.2	0.1	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2990	PF11693.8	gi|336252276|ref|YP_004595383.1|	-	0.039	14.1	0.0	0.083	13.1	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2990)
Sulfatase	PF00884.23	gi|336252276|ref|YP_004595383.1|	-	0.043	13.2	1.2	0.42	9.9	0.1	2.3	2	0	0	2	2	2	0	Sulfatase
OppC_N	PF12911.7	gi|336252277|ref|YP_004595384.1|	-	0.29	11.2	1.1	0.35	10.9	1.0	1.5	1	1	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Phage_holin_3_6	PF07332.11	gi|336252277|ref|YP_004595384.1|	-	0.5	10.4	8.5	0.55	10.3	8.5	1.0	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF4407	PF14362.6	gi|336252277|ref|YP_004595384.1|	-	8.4	5.6	5.8	9.6	5.5	5.8	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF1072	PF06380.11	gi|336252277|ref|YP_004595384.1|	-	8.7	6.3	10.5	1.6	8.7	1.6	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1072)
DUF371	PF04027.13	gi|336252278|ref|YP_004595385.1|	-	1.5e-52	177.0	0.1	1.7e-52	176.9	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Zn_Tnp_IS1595	PF12760.7	gi|336252279|ref|YP_004595386.1|	-	0.00049	20.0	2.8	0.048	13.6	0.1	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
CpXC	PF14353.6	gi|336252279|ref|YP_004595386.1|	-	0.0012	18.9	1.4	0.0015	18.6	1.4	1.1	1	0	0	1	1	1	1	CpXC	protein
Cys_rich_CPXG	PF14255.6	gi|336252279|ref|YP_004595386.1|	-	0.0051	16.7	0.8	0.18	11.7	0.0	2.1	2	0	0	2	2	2	1	Cysteine-rich	CPXCG
zinc_ribbon_4	PF13717.6	gi|336252279|ref|YP_004595386.1|	-	0.0093	15.9	2.8	2.1	8.4	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|336252279|ref|YP_004595386.1|	-	0.011	16.0	1.1	0.49	10.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon
zf-C2HC_2	PF13913.6	gi|336252279|ref|YP_004595386.1|	-	0.015	15.2	6.4	0.26	11.2	1.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-ribbon_3	PF13248.6	gi|336252279|ref|YP_004595386.1|	-	0.016	14.6	1.9	3.2	7.3	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|336252279|ref|YP_004595386.1|	-	0.043	14.7	4.9	2.4	9.2	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Nudix_N_2	PF14803.6	gi|336252279|ref|YP_004595386.1|	-	0.048	13.6	6.5	1.3	9.0	0.4	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-ISL3	PF14690.6	gi|336252279|ref|YP_004595386.1|	-	0.061	14.0	8.0	0.22	12.2	0.6	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Elf1	PF05129.13	gi|336252279|ref|YP_004595386.1|	-	0.068	13.2	4.5	0.19	11.8	4.5	1.7	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-H2C2_2	PF13465.6	gi|336252279|ref|YP_004595386.1|	-	0.075	13.5	2.4	4.5	7.9	0.3	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zinc_ribbon_2	PF13240.6	gi|336252279|ref|YP_004595386.1|	-	0.079	12.7	4.6	0.83	9.5	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
GFA	PF04828.14	gi|336252279|ref|YP_004595386.1|	-	0.11	12.8	3.8	0.25	11.7	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
OrfB_Zn_ribbon	PF07282.11	gi|336252279|ref|YP_004595386.1|	-	0.12	12.3	4.5	0.32	11.0	0.7	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF35_N	PF12172.8	gi|336252279|ref|YP_004595386.1|	-	0.13	12.2	2.5	1.3	9.0	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn-ribbon_8	PF09723.10	gi|336252279|ref|YP_004595386.1|	-	0.13	12.4	2.6	7.2	6.8	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|336252279|ref|YP_004595386.1|	-	0.45	10.2	4.5	2	8.1	0.6	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|336252279|ref|YP_004595386.1|	-	0.47	10.0	5.6	6.6	6.3	5.6	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-C2H2	PF00096.26	gi|336252279|ref|YP_004595386.1|	-	0.55	10.8	4.4	14	6.4	0.2	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
ADK_lid	PF05191.14	gi|336252279|ref|YP_004595386.1|	-	0.56	10.2	5.0	2.5	8.1	4.9	2.0	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zf-LITAF-like	PF10601.9	gi|336252279|ref|YP_004595386.1|	-	1.1	9.6	6.6	0.6	10.4	0.8	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
RseC_MucC	PF04246.12	gi|336252279|ref|YP_004595386.1|	-	5.6	6.9	6.3	0.77	9.7	1.5	1.8	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
HhH-GPD	PF00730.25	gi|336252280|ref|YP_004595387.1|	-	3.8e-17	62.7	0.0	7.8e-17	61.7	0.0	1.5	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
EndIII_4Fe-2S	PF10576.9	gi|336252280|ref|YP_004595387.1|	-	1.2e-05	25.5	7.4	2.7e-05	24.4	7.4	1.6	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH	PF00633.23	gi|336252280|ref|YP_004595387.1|	-	4.8e-05	23.0	0.0	0.00014	21.5	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|336252280|ref|YP_004595387.1|	-	0.079	13.6	0.1	0.22	12.2	0.0	1.8	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
MEDS	PF14417.6	gi|336252281|ref|YP_004595388.1|	-	1.6e-50	171.1	4.1	1.9e-50	170.8	1.3	2.4	3	0	0	3	3	3	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
HATPase_c	PF02518.26	gi|336252281|ref|YP_004595388.1|	-	2.1e-29	102.3	0.0	1.4e-28	99.7	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336252281|ref|YP_004595388.1|	-	1e-08	35.1	3.5	1.9e-08	34.2	0.0	2.8	3	0	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
ATPase	PF06745.13	gi|336252281|ref|YP_004595388.1|	-	1.3e-07	31.2	0.1	2.7e-07	30.2	0.1	1.4	1	0	0	1	1	1	1	KaiC
GAF_2	PF13185.6	gi|336252281|ref|YP_004595388.1|	-	3e-07	30.8	0.8	1.4e-06	28.7	0.0	2.6	3	0	0	3	3	3	1	GAF	domain
GAF_3	PF13492.6	gi|336252281|ref|YP_004595388.1|	-	1.1e-05	25.8	0.0	2.2e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|336252281|ref|YP_004595388.1|	-	1.4e-05	24.9	0.0	8.6e-05	22.4	0.0	2.1	2	0	0	2	2	2	1	GHKL	domain
GAF	PF01590.26	gi|336252281|ref|YP_004595388.1|	-	2e-05	25.2	0.0	0.00012	22.7	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
HATPase_c_2	PF13581.6	gi|336252281|ref|YP_004595388.1|	-	0.014	15.3	0.0	0.033	14.1	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336252281|ref|YP_004595388.1|	-	0.041	13.7	0.0	0.076	12.8	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HEM4	PF02602.15	gi|336252281|ref|YP_004595388.1|	-	0.05	12.9	0.0	0.096	12.0	0.0	1.4	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
DUF5380	PF17351.2	gi|336252281|ref|YP_004595388.1|	-	0.19	11.6	0.0	0.95	9.4	0.0	2.0	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5380)
AAA	PF00004.29	gi|336252282|ref|YP_004595389.1|	-	8.3e-11	42.4	0.0	3.3e-10	40.5	0.0	2.1	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|336252282|ref|YP_004595389.1|	-	2.3e-06	27.4	0.0	4.6e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_assoc_2	PF16193.5	gi|336252282|ref|YP_004595389.1|	-	0.00011	22.5	0.2	0.00038	20.7	0.2	2.0	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA_25	PF13481.6	gi|336252282|ref|YP_004595389.1|	-	0.00041	20.0	0.2	0.13	11.8	0.0	2.9	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.6	gi|336252282|ref|YP_004595389.1|	-	0.00094	19.5	0.0	0.33	11.2	0.0	3.0	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|336252282|ref|YP_004595389.1|	-	0.0017	18.1	0.3	0.0047	16.7	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336252282|ref|YP_004595389.1|	-	0.0029	18.0	0.4	0.018	15.4	0.0	2.4	2	1	0	3	3	3	1	AAA	ATPase	domain
AAA_28	PF13521.6	gi|336252282|ref|YP_004595389.1|	-	0.0061	16.8	0.1	0.023	14.9	0.1	2.1	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|336252282|ref|YP_004595389.1|	-	0.0075	16.2	0.0	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|336252282|ref|YP_004595389.1|	-	0.0077	16.4	0.2	0.028	14.6	0.0	2.1	2	0	0	2	2	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336252282|ref|YP_004595389.1|	-	0.01	15.8	0.0	0.031	14.2	0.0	1.8	2	0	0	2	2	2	1	RsgA	GTPase
AAA_5	PF07728.14	gi|336252282|ref|YP_004595389.1|	-	0.021	14.8	0.0	0.065	13.2	0.0	1.9	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|336252282|ref|YP_004595389.1|	-	0.021	14.1	0.0	0.044	13.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
Hydin_ADK	PF17213.3	gi|336252282|ref|YP_004595389.1|	-	0.022	15.0	0.1	0.022	15.0	0.1	2.6	3	0	0	3	3	3	0	Hydin	Adenylate	kinase-like	domain
IstB_IS21	PF01695.17	gi|336252282|ref|YP_004595389.1|	-	0.031	14.0	0.0	0.058	13.1	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|336252282|ref|YP_004595389.1|	-	0.035	14.7	0.0	0.18	12.4	0.0	2.3	1	0	0	1	1	1	0	AAA	domain
DNA_pol3_delta	PF06144.13	gi|336252282|ref|YP_004595389.1|	-	0.056	13.2	0.0	0.099	12.4	0.0	1.4	1	0	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
RNA_helicase	PF00910.22	gi|336252282|ref|YP_004595389.1|	-	0.058	13.8	0.0	0.13	12.6	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Bac_DnaA	PF00308.18	gi|336252282|ref|YP_004595389.1|	-	0.066	13.0	0.1	5.7	6.7	0.0	3.2	3	1	0	3	3	3	0	Bacterial	dnaA	protein
IPT	PF01745.16	gi|336252282|ref|YP_004595389.1|	-	0.073	12.4	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	Isopentenyl	transferase
DEAD	PF00270.29	gi|336252282|ref|YP_004595389.1|	-	0.084	12.6	0.0	8.5	6.1	0.0	2.9	3	0	0	3	3	3	0	DEAD/DEAH	box	helicase
DUF2075	PF09848.9	gi|336252282|ref|YP_004595389.1|	-	0.12	11.6	0.9	3.8	6.7	0.0	2.8	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|336252282|ref|YP_004595389.1|	-	0.16	11.9	0.0	0.5	10.3	0.0	1.8	2	0	0	2	2	1	0	NACHT	domain
TraH_2	PF06871.11	gi|336252282|ref|YP_004595389.1|	-	0.36	10.5	5.0	0.88	9.2	5.0	1.7	1	0	0	1	1	1	0	TraH_2
RNF220	PF15926.5	gi|336252283|ref|YP_004595390.1|	-	0.00021	21.0	0.6	0.00024	20.8	0.6	1.0	1	0	0	1	1	1	1	E3	ubiquitin-protein	ligase	RNF220
zf-Di19	PF05605.12	gi|336252283|ref|YP_004595390.1|	-	0.002	18.3	0.7	0.0032	17.7	0.5	1.4	1	1	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.6	gi|336252283|ref|YP_004595390.1|	-	0.028	15.3	0.5	0.061	14.2	0.2	1.7	2	0	0	2	2	2	0	C2H2-type	zinc	finger
GAGA	PF09237.11	gi|336252283|ref|YP_004595390.1|	-	0.44	10.4	2.1	0.57	10.0	0.5	1.8	2	0	0	2	2	2	0	GAGA	factor
Aminotran_1_2	PF00155.21	gi|336252284|ref|YP_004595391.1|	-	1.2e-55	189.2	0.0	1.3e-55	189.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|336252284|ref|YP_004595391.1|	-	0.0038	15.8	0.0	0.007	15.0	0.0	1.4	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|336252284|ref|YP_004595391.1|	-	0.014	14.7	1.4	0.059	12.7	1.4	1.9	1	1	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OKR_DC_1	PF01276.20	gi|336252284|ref|YP_004595391.1|	-	0.036	12.8	0.0	0.068	11.9	0.0	1.4	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
DUF992	PF06186.11	gi|336252284|ref|YP_004595391.1|	-	0.075	12.9	0.1	6.8	6.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF992)
Aminotran_5	PF00266.19	gi|336252284|ref|YP_004595391.1|	-	0.11	11.4	0.0	0.17	10.8	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
Flg_hook	PF02120.16	gi|336252284|ref|YP_004595391.1|	-	0.15	12.0	0.0	5.3	7.0	0.0	2.4	2	0	0	2	2	2	0	Flagellar	hook-length	control	protein	FliK
BATS	PF06968.13	gi|336252285|ref|YP_004595392.1|	-	2.2e-16	59.8	0.0	4.3e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	Biotin	and	Thiamin	Synthesis	associated	domain
Radical_SAM	PF04055.21	gi|336252285|ref|YP_004595392.1|	-	4e-15	56.6	0.9	2.5e-13	50.8	0.2	2.3	2	0	0	2	2	2	2	Radical	SAM	superfamily
STN	PF07660.14	gi|336252285|ref|YP_004595392.1|	-	0.19	11.5	0.0	0.41	10.5	0.0	1.5	1	0	0	1	1	1	0	Secretin	and	TonB	N	terminus	short	domain
CoA_binding	PF02629.19	gi|336252287|ref|YP_004595394.1|	-	5.5e-26	91.1	0.8	5.5e-26	91.1	0.8	2.3	2	1	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|336252287|ref|YP_004595394.1|	-	2.5e-15	56.6	0.5	5.5e-15	55.5	0.5	1.5	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|336252287|ref|YP_004595394.1|	-	5.6e-12	45.6	0.0	8.5e-12	45.0	0.0	1.3	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|336252287|ref|YP_004595394.1|	-	2.3e-06	28.1	0.0	1.4e-05	25.5	0.0	2.1	2	0	0	2	2	2	1	CoA	binding	domain
IlvN	PF07991.12	gi|336252287|ref|YP_004595394.1|	-	0.04	13.5	0.1	0.072	12.7	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ATP-grasp_2	PF08442.10	gi|336252288|ref|YP_004595395.1|	-	2.6e-62	210.0	0.2	4.2e-62	209.3	0.2	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|336252288|ref|YP_004595395.1|	-	7e-20	71.4	3.9	1.3e-18	67.3	3.3	2.5	2	1	0	2	2	2	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|336252288|ref|YP_004595395.1|	-	1.7e-13	50.6	0.3	4.7e-13	49.2	0.3	1.6	1	0	0	1	1	1	1	CoA-ligase
CPSase_L_D2	PF02786.17	gi|336252288|ref|YP_004595395.1|	-	3.3e-13	49.6	0.7	2e-10	40.6	0.4	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|336252288|ref|YP_004595395.1|	-	1.2e-07	31.5	0.1	2.4e-07	30.5	0.1	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|336252288|ref|YP_004595395.1|	-	3e-06	27.1	0.2	6.9e-06	26.0	0.2	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Succ_CoA_lig	PF13607.6	gi|336252288|ref|YP_004595395.1|	-	0.084	12.7	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	Succinyl-CoA	ligase	like	flavodoxin	domain
DUF4891	PF16232.5	gi|336252288|ref|YP_004595395.1|	-	0.13	12.8	0.0	0.46	11.0	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4891)
Dala_Dala_lig_C	PF07478.13	gi|336252288|ref|YP_004595395.1|	-	0.24	10.9	3.8	0.13	11.8	0.7	2.1	2	1	0	2	2	2	0	D-ala	D-ala	ligase	C-terminus
UbiA	PF01040.18	gi|336252289|ref|YP_004595396.1|	-	2e-22	79.8	18.7	2.9e-22	79.2	18.7	1.3	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Zn-ribbon_8	PF09723.10	gi|336252290|ref|YP_004595397.1|	-	0.0031	17.6	0.9	0.024	14.7	0.1	2.1	2	0	0	2	2	2	1	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|336252290|ref|YP_004595397.1|	-	0.0098	15.8	0.2	0.013	15.4	0.2	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DiS_P_DiS	PF06750.13	gi|336252290|ref|YP_004595397.1|	-	0.025	14.7	0.0	0.029	14.5	0.0	1.1	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
DraK_HK_N	PF18092.1	gi|336252290|ref|YP_004595397.1|	-	0.029	14.8	0.1	0.029	14.8	0.1	1.2	1	0	0	1	1	1	0	DraK	Histidine	Kinase	N-terminal	domain
HalOD1	PF18545.1	gi|336252292|ref|YP_004595399.1|	-	6.5e-20	71.2	0.3	7.6e-20	71.0	0.3	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF4567	PF15131.6	gi|336252293|ref|YP_004595400.1|	-	0.021	14.8	0.0	0.022	14.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4567)
Aldo_ket_red	PF00248.21	gi|336252294|ref|YP_004595401.1|	-	1.3e-54	185.5	0.0	2.2e-52	178.1	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
FAD_binding_4	PF01565.23	gi|336252294|ref|YP_004595401.1|	-	0.14	11.9	0.0	11	5.7	0.0	2.2	2	0	0	2	2	2	0	FAD	binding	domain
Glyco_transf_5	PF08323.11	gi|336252295|ref|YP_004595402.1|	-	0.047	13.4	0.1	0.066	12.9	0.1	1.2	1	0	0	1	1	1	0	Starch	synthase	catalytic	domain
SLATT_1	PF18181.1	gi|336252295|ref|YP_004595402.1|	-	1.3	9.0	5.0	0.8	9.6	2.2	2.0	1	1	1	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
GPHR_N	PF12537.8	gi|336252295|ref|YP_004595402.1|	-	8.4	6.6	6.8	3.8	7.7	2.4	2.2	1	1	1	2	2	2	0	The	Golgi	pH	Regulator	(GPHR)	Family	N-terminal
SLAC1	PF03595.17	gi|336252296|ref|YP_004595403.1|	-	0.002	17.5	4.6	0.0023	17.3	4.6	1.0	1	0	0	1	1	1	1	Voltage-dependent	anion	channel
Phage_holin_5_2	PF16079.5	gi|336252296|ref|YP_004595403.1|	-	0.028	14.7	2.4	0.032	14.5	2.4	1.1	1	0	0	1	1	1	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
Aconitase	PF00330.20	gi|336252296|ref|YP_004595403.1|	-	0.38	9.7	1.0	0.41	9.6	1.0	1.0	1	0	0	1	1	1	0	Aconitase	family	(aconitate	hydratase)
PAPS_reduct	PF01507.19	gi|336252297|ref|YP_004595404.1|	-	2e-18	67.1	0.0	1.7e-14	54.2	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|336252297|ref|YP_004595404.1|	-	0.04	13.4	0.0	0.086	12.3	0.0	1.6	2	0	0	2	2	2	0	Diphthamide	synthase
Epimerase_2	PF02350.19	gi|336252298|ref|YP_004595405.1|	-	4.1e-107	358.0	0.0	4.8e-107	357.8	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.6	gi|336252298|ref|YP_004595405.1|	-	0.0081	16.6	0.0	0.021	15.2	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
baeRF_family2	PF18844.1	gi|336252298|ref|YP_004595405.1|	-	0.031	14.3	1.2	0.078	13.0	0.8	1.9	1	1	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	2
MutL	PF13941.6	gi|336252298|ref|YP_004595405.1|	-	0.15	10.6	0.0	0.22	10.0	0.0	1.2	1	0	0	1	1	1	0	MutL	protein
DUF354	PF04007.12	gi|336252299|ref|YP_004595406.1|	-	2.7e-07	30.0	0.0	5.2e-07	29.1	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Glyco_trans_4_4	PF13579.6	gi|336252299|ref|YP_004595406.1|	-	0.00015	22.3	0.8	0.0017	18.8	0.8	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|336252299|ref|YP_004595406.1|	-	0.0021	18.0	0.1	0.0042	17.1	0.1	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_transf_28	PF03033.20	gi|336252299|ref|YP_004595406.1|	-	0.074	13.1	0.0	0.25	11.4	0.0	1.9	1	1	1	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
CytB6-F_Fe-S	PF08802.10	gi|336252300|ref|YP_004595407.1|	-	0.03	14.3	0.1	0.065	13.3	0.1	1.5	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	Fe-S	subunit
HEPN	PF05168.14	gi|336252300|ref|YP_004595407.1|	-	0.061	13.4	0.1	0.061	13.4	0.1	2.4	3	1	0	3	3	3	0	HEPN	domain
CRT10	PF08728.10	gi|336252301|ref|YP_004595408.1|	-	0.18	9.9	0.1	0.2	9.8	0.1	1.0	1	0	0	1	1	1	0	CRT10
Glutaredoxin	PF00462.24	gi|336252302|ref|YP_004595409.1|	-	2.3e-16	59.7	0.0	5.1e-16	58.6	0.0	1.6	2	0	0	2	2	2	1	Glutaredoxin
Abhydrolase_1	PF00561.20	gi|336252302|ref|YP_004595409.1|	-	0.11	12.1	0.0	0.16	11.6	0.0	1.1	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
Methyltransf_25	PF13649.6	gi|336252303|ref|YP_004595410.1|	-	7e-21	74.7	0.1	2.1e-20	73.2	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336252303|ref|YP_004595410.1|	-	1.1e-18	67.6	0.1	3e-18	66.3	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336252303|ref|YP_004595410.1|	-	6.4e-15	55.3	0.0	7.8e-15	55.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336252303|ref|YP_004595410.1|	-	8.4e-15	55.0	0.0	1.1e-14	54.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336252303|ref|YP_004595410.1|	-	1.6e-10	41.6	0.0	3e-10	40.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336252303|ref|YP_004595410.1|	-	2.2e-07	30.4	0.0	3e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
CMAS	PF02353.20	gi|336252303|ref|YP_004595410.1|	-	1.2e-06	28.1	0.0	1.4e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|336252303|ref|YP_004595410.1|	-	7.9e-06	25.6	0.0	1.1e-05	25.1	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|336252303|ref|YP_004595410.1|	-	0.00063	19.3	0.0	0.00092	18.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
CheR	PF01739.18	gi|336252303|ref|YP_004595410.1|	-	0.00072	19.1	0.0	0.0051	16.3	0.0	2.2	2	1	1	3	3	3	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_8	PF05148.15	gi|336252303|ref|YP_004595410.1|	-	0.00072	19.5	0.0	0.0015	18.4	0.0	1.6	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_29	PF03141.16	gi|336252303|ref|YP_004595410.1|	-	0.024	13.2	0.0	0.03	12.9	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_9	PF08003.11	gi|336252303|ref|YP_004595410.1|	-	0.052	12.5	0.0	0.058	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
TPMT	PF05724.11	gi|336252303|ref|YP_004595410.1|	-	0.061	13.0	0.0	0.21	11.2	0.0	1.7	1	1	1	2	2	2	0	Thiopurine	S-methyltransferase	(TPMT)
DUF5348	PF17295.2	gi|336252303|ref|YP_004595410.1|	-	0.11	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5348)
Methyltransf_4	PF02390.17	gi|336252303|ref|YP_004595410.1|	-	0.21	11.1	0.0	1.2	8.6	0.0	2.0	1	1	0	1	1	1	0	Putative	methyltransferase
DUF3948	PF13134.6	gi|336252304|ref|YP_004595411.1|	-	0.093	12.4	0.3	0.39	10.5	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3948)
AstE_AspA	PF04952.14	gi|336252305|ref|YP_004595412.1|	-	1e-16	60.9	0.2	1.8e-16	60.1	0.2	1.4	1	1	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|336252305|ref|YP_004595412.1|	-	0.0023	17.4	0.0	0.004	16.6	0.0	1.3	1	0	0	1	1	1	1	Carboxypeptidase	controlling	helical	cell	shape	catalytic
DUF309	PF03745.14	gi|336252306|ref|YP_004595413.1|	-	1.4e-14	53.5	0.2	2.4e-14	52.8	0.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
OrfB_Zn_ribbon	PF07282.11	gi|336252307|ref|YP_004595414.1|	-	0.00011	22.1	1.1	0.00014	21.8	1.1	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-HIT	PF04438.16	gi|336252307|ref|YP_004595414.1|	-	0.00019	21.2	4.0	0.015	15.1	0.3	2.1	2	0	0	2	2	2	2	HIT	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|336252307|ref|YP_004595414.1|	-	0.00044	19.7	5.5	0.00074	19.0	5.5	1.6	1	1	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|336252307|ref|YP_004595414.1|	-	0.00057	19.8	0.7	0.00081	19.4	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336252307|ref|YP_004595414.1|	-	0.00067	19.0	2.8	0.21	11.1	0.4	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|336252307|ref|YP_004595414.1|	-	0.0024	17.8	3.0	0.11	12.5	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336252307|ref|YP_004595414.1|	-	0.0038	16.9	3.7	0.24	11.2	0.4	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
FYDLN_acid	PF09538.10	gi|336252307|ref|YP_004595414.1|	-	0.0051	17.5	0.2	0.0061	17.2	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(FYDLN_acid)
Rep_fac-A_C	PF08646.10	gi|336252307|ref|YP_004595414.1|	-	0.0072	16.1	0.1	0.0073	16.1	0.1	1.1	1	0	0	1	1	1	1	Replication	factor-A	C	terminal	domain
DUF35_N	PF12172.8	gi|336252307|ref|YP_004595414.1|	-	0.011	15.6	2.3	0.76	9.7	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc-ribbons_6	PF07191.12	gi|336252307|ref|YP_004595414.1|	-	0.012	15.5	0.2	0.015	15.3	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
Rubredoxin_2	PF18073.1	gi|336252307|ref|YP_004595414.1|	-	0.014	15.1	7.0	0.068	12.9	0.8	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
C1_1	PF00130.22	gi|336252307|ref|YP_004595414.1|	-	0.015	15.2	0.3	0.019	14.8	0.3	1.1	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF4589	PF15252.6	gi|336252307|ref|YP_004595414.1|	-	0.018	15.0	1.2	0.019	15.0	1.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4589)
NRDD	PF13597.6	gi|336252307|ref|YP_004595414.1|	-	0.019	13.8	0.8	0.02	13.7	0.8	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-ACC	PF17848.1	gi|336252307|ref|YP_004595414.1|	-	0.026	14.6	1.1	1.9	8.7	0.2	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
HypA	PF01155.19	gi|336252307|ref|YP_004595414.1|	-	0.029	14.4	0.2	0.03	14.3	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RRN7	PF11781.8	gi|336252307|ref|YP_004595414.1|	-	0.053	13.2	6.4	0.077	12.7	6.4	1.2	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn_Tnp_IS1595	PF12760.7	gi|336252307|ref|YP_004595414.1|	-	0.053	13.5	5.2	0.13	12.2	5.3	1.6	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|336252307|ref|YP_004595414.1|	-	0.059	13.0	4.0	0.99	9.1	0.5	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-LITAF-like	PF10601.9	gi|336252307|ref|YP_004595414.1|	-	0.08	13.2	0.5	11	6.3	0.2	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|336252307|ref|YP_004595414.1|	-	0.088	12.4	0.5	9	6.0	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_SprT	PF17283.2	gi|336252307|ref|YP_004595414.1|	-	0.11	12.5	6.9	1.4	8.9	1.4	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Auto_anti-p27	PF06677.12	gi|336252307|ref|YP_004595414.1|	-	0.11	12.7	1.5	0.14	12.3	1.5	1.2	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Sgf11	PF08209.11	gi|336252307|ref|YP_004595414.1|	-	0.12	12.0	3.1	3.5	7.3	0.3	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn-ribbon_8	PF09723.10	gi|336252307|ref|YP_004595414.1|	-	0.13	12.4	4.2	5.6	7.2	0.1	2.3	2	1	0	2	2	2	0	Zinc	ribbon	domain
NESP55	PF06390.12	gi|336252307|ref|YP_004595414.1|	-	0.14	11.8	2.4	0.14	11.8	2.4	1.1	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
zinc_ribbon_5	PF13719.6	gi|336252307|ref|YP_004595414.1|	-	0.15	11.9	1.7	3	7.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|336252307|ref|YP_004595414.1|	-	0.16	12.4	6.3	0.39	11.1	0.3	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-TFIIB	PF13453.6	gi|336252307|ref|YP_004595414.1|	-	0.23	10.8	3.6	0.63	9.4	3.5	1.7	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Ogr_Delta	PF04606.12	gi|336252307|ref|YP_004595414.1|	-	0.25	11.4	3.2	3	7.9	0.2	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-RING_4	PF14570.6	gi|336252307|ref|YP_004595414.1|	-	0.26	11.1	8.6	6.6	6.6	8.3	2.2	1	1	1	2	2	2	0	RING/Ubox	like	zinc-binding	domain
DUF983	PF06170.12	gi|336252307|ref|YP_004595414.1|	-	0.28	11.6	3.5	8	6.9	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
zf_C2H2_10	PF18414.1	gi|336252307|ref|YP_004595414.1|	-	0.29	10.7	3.3	8.6	6.0	0.1	2.6	3	0	0	3	3	2	0	C2H2	type	zinc-finger
DUF1610	PF07754.11	gi|336252307|ref|YP_004595414.1|	-	0.33	11.0	10.8	0.76	9.8	3.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-ISL3	PF14690.6	gi|336252307|ref|YP_004595414.1|	-	0.53	11.0	6.5	0.7	10.6	0.4	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_10	PF10058.9	gi|336252307|ref|YP_004595414.1|	-	1.1	9.1	4.7	38	4.1	0.4	2.2	1	1	1	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf_Rg	PF17915.1	gi|336252307|ref|YP_004595414.1|	-	1.1	8.7	7.4	5.6	6.4	0.5	2.1	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|336252307|ref|YP_004595414.1|	-	4.2	7.5	9.8	0.76	9.9	5.7	1.9	2	1	0	2	2	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-RING_7	PF02591.15	gi|336252307|ref|YP_004595414.1|	-	6	7.1	8.6	16	5.8	0.2	2.6	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
DUF3797	PF12677.7	gi|336252307|ref|YP_004595414.1|	-	7.7	6.5	8.1	2.8	7.9	0.8	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
VKG_Carbox	PF05090.14	gi|336252308|ref|YP_004595415.1|	-	1.4e-12	47.2	0.0	1.7e-12	46.9	0.0	1.1	1	0	0	1	1	1	1	Vitamin	K-dependent	gamma-carboxylase
LysR_substrate	PF03466.20	gi|336252308|ref|YP_004595415.1|	-	0.0011	18.4	1.1	0.0027	17.1	0.0	2.2	3	0	0	3	3	3	1	LysR	substrate	binding	domain
Flavi_M	PF01004.19	gi|336252308|ref|YP_004595415.1|	-	0.063	13.0	0.0	0.17	11.7	0.0	1.7	1	0	0	1	1	1	0	Flavivirus	envelope	glycoprotein	M
Inositol_P	PF00459.25	gi|336252309|ref|YP_004595416.1|	-	1.4e-56	192.1	0.7	1.6e-56	191.9	0.7	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|336252309|ref|YP_004595416.1|	-	0.021	14.3	0.0	0.03	13.8	0.0	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase,	N-terminal	domain
DUF63	PF01889.17	gi|336252310|ref|YP_004595417.1|	-	1e-33	117.7	12.0	1.4e-31	110.7	9.1	3.1	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
DUF2206	PF09971.9	gi|336252310|ref|YP_004595417.1|	-	0.06	12.1	1.1	0.081	11.7	0.3	1.6	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2206)
AA_permease_2	PF13520.6	gi|336252311|ref|YP_004595418.1|	-	3.9e-45	154.4	42.9	5e-45	154.1	42.9	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|336252311|ref|YP_004595418.1|	-	4e-41	141.1	39.0	5.4e-41	140.7	39.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|336252311|ref|YP_004595418.1|	-	1.2e-19	71.2	15.4	7.5e-11	42.7	0.7	3.7	3	1	0	3	3	3	2	Universal	stress	protein	family
Spore_permease	PF03845.13	gi|336252311|ref|YP_004595418.1|	-	2.4e-05	23.3	11.6	2.4e-05	23.3	11.6	2.3	2	1	0	2	2	2	1	Spore	germination	protein
MIG-14_Wnt-bd	PF06664.12	gi|336252311|ref|YP_004595418.1|	-	0.14	11.4	6.5	0.33	10.1	6.5	1.6	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
DUF3810	PF12725.7	gi|336252311|ref|YP_004595418.1|	-	0.62	9.4	2.9	2.9	7.2	0.0	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3810)
AA_permease_C	PF13906.6	gi|336252311|ref|YP_004595418.1|	-	1.1	9.3	7.9	1.1	9.4	4.7	2.7	2	0	0	2	2	2	0	C-terminus	of	AA_permease
DUF5373	PF17343.2	gi|336252311|ref|YP_004595418.1|	-	8.5	6.2	8.4	0.26	11.1	2.1	1.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5373)
AA_permease_2	PF13520.6	gi|336252312|ref|YP_004595419.1|	-	8.8e-45	153.3	43.4	1.1e-44	152.9	43.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|336252312|ref|YP_004595419.1|	-	4.7e-37	127.7	39.6	6.2e-37	127.3	39.6	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|336252312|ref|YP_004595419.1|	-	9.6e-23	81.3	8.7	3e-10	40.8	3.5	3.2	2	1	0	2	2	2	2	Universal	stress	protein	family
AA_permease_C	PF13906.6	gi|336252312|ref|YP_004595419.1|	-	0.0074	16.3	3.7	0.0074	16.3	3.7	2.6	3	0	0	3	3	3	1	C-terminus	of	AA_permease
BNR_4	PF15892.5	gi|336252313|ref|YP_004595420.1|	-	6.2e-87	291.4	1.4	1.1e-86	290.6	1.4	1.4	1	0	0	1	1	1	1	BNR	repeat-containing	family	member
Usp	PF00582.26	gi|336252315|ref|YP_004595422.1|	-	7.3e-23	81.6	0.2	7.3e-23	81.6	0.2	1.5	2	0	0	2	2	2	1	Universal	stress	protein	family
HTH_10	PF04967.12	gi|336252316|ref|YP_004595423.1|	-	1.1e-17	63.5	0.1	1.9e-17	62.8	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252316|ref|YP_004595423.1|	-	3.5e-11	43.2	0.4	3.5e-11	43.2	0.4	1.8	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336252316|ref|YP_004595423.1|	-	0.00022	20.7	0.2	0.00054	19.4	0.2	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336252316|ref|YP_004595423.1|	-	0.0014	18.5	1.0	0.0044	16.9	0.6	2.0	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336252316|ref|YP_004595423.1|	-	0.024	14.5	0.7	0.054	13.3	0.7	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252316|ref|YP_004595423.1|	-	0.026	14.1	0.2	0.047	13.3	0.2	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Arg_decarbox_C	PF17944.1	gi|336252316|ref|YP_004595423.1|	-	0.055	14.0	0.2	14	6.3	0.0	3.1	3	0	0	3	3	3	0	Arginine	decarboxylase	C-terminal	helical	extension
Sigma70_r4_2	PF08281.12	gi|336252316|ref|YP_004595423.1|	-	0.081	12.6	0.3	6.8	6.5	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
UPF0122	PF04297.14	gi|336252316|ref|YP_004595423.1|	-	0.17	12.1	0.0	0.32	11.3	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Nop	PF01798.18	gi|336252317|ref|YP_004595424.1|	-	1.4e-40	139.2	0.0	2.3e-40	138.5	0.0	1.3	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
HutP	PF09021.11	gi|336252317|ref|YP_004595424.1|	-	0.023	15.0	0.1	0.39	11.0	0.0	2.2	2	0	0	2	2	2	0	HutP
Fibrillarin	PF01269.17	gi|336252318|ref|YP_004595425.1|	-	2.2e-53	180.7	0.0	2.6e-53	180.5	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
RTP1_C2	PF10304.9	gi|336252318|ref|YP_004595425.1|	-	0.86	9.4	3.5	8.5	6.2	1.8	3.2	3	1	0	3	3	3	0	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	2
Trp_oprn_chp	PF09534.10	gi|336252319|ref|YP_004595426.1|	-	0.0031	17.3	0.5	0.0055	16.5	0.5	1.4	1	0	0	1	1	1	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
PAS_7	PF12860.7	gi|336252319|ref|YP_004595426.1|	-	0.016	15.4	0.1	0.029	14.5	0.1	1.4	1	0	0	1	1	1	0	PAS	fold
Attachment_P66	PF11263.8	gi|336252319|ref|YP_004595426.1|	-	0.57	9.4	3.3	1.7	7.9	1.8	2.0	2	0	0	2	2	2	0	Borrelia	burgdorferi	attachment	protein	P66
DUF5422	PF17459.2	gi|336252320|ref|YP_004595427.1|	-	0.059	13.5	1.0	0.059	13.5	1.0	2.4	1	1	0	2	2	2	0	Family	of	unknown	function	(DUF5422)
GCS2	PF04107.13	gi|336252321|ref|YP_004595428.1|	-	3.5e-78	262.9	0.3	4.1e-78	262.7	0.3	1.0	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Amidoligase_2	PF12224.8	gi|336252321|ref|YP_004595428.1|	-	0.081	12.6	0.7	12	5.5	0.0	2.6	2	1	0	2	2	2	0	Putative	amidoligase	enzyme
GCS	PF03074.16	gi|336252321|ref|YP_004595428.1|	-	0.12	11.7	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	Glutamate-cysteine	ligase
p6	PF17548.2	gi|336252322|ref|YP_004595429.1|	-	0.16	11.9	0.1	0.6	10.1	0.0	1.9	2	0	0	2	2	2	0	Histone-like	Protein	p6
DNA_ligase_IV	PF11411.8	gi|336252322|ref|YP_004595429.1|	-	2.1	8.6	4.6	11	6.3	1.2	2.7	2	0	0	2	2	2	0	DNA	ligase	IV
Amino_oxidase	PF01593.24	gi|336252323|ref|YP_004595430.1|	-	3.3e-23	82.7	1.6	5.7e-23	81.9	1.6	1.4	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|336252323|ref|YP_004595430.1|	-	1.5e-14	53.9	0.8	3.2e-14	52.9	0.3	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|336252323|ref|YP_004595430.1|	-	3e-10	39.8	3.8	6.3e-08	32.1	2.2	2.2	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|336252323|ref|YP_004595430.1|	-	5.3e-10	39.4	6.9	5.3e-10	39.4	6.9	2.8	2	2	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336252323|ref|YP_004595430.1|	-	3.7e-09	36.2	0.3	1.4e-06	27.7	0.3	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336252323|ref|YP_004595430.1|	-	9.3e-07	27.9	0.4	1.8e-05	23.6	0.7	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|336252323|ref|YP_004595430.1|	-	1.6e-06	27.6	0.8	2.8e-06	26.8	0.8	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336252323|ref|YP_004595430.1|	-	2.1e-06	27.3	0.4	3.5e-06	26.6	0.4	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|336252323|ref|YP_004595430.1|	-	2.7e-06	27.8	0.2	3.9e-05	24.1	0.8	2.5	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
MCRA	PF06100.11	gi|336252323|ref|YP_004595430.1|	-	3.4e-06	26.2	0.0	0.22	10.2	0.0	3.2	3	0	0	3	3	3	3	MCRA	family
Thi4	PF01946.17	gi|336252323|ref|YP_004595430.1|	-	3e-05	23.4	0.6	4.6e-05	22.8	0.6	1.2	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|336252323|ref|YP_004595430.1|	-	0.0025	16.9	0.6	0.0046	16.1	0.6	1.4	1	0	0	1	1	1	1	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|336252323|ref|YP_004595430.1|	-	0.0056	15.8	2.1	0.0066	15.6	1.2	1.5	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
TetR_C_16	PF17920.1	gi|336252323|ref|YP_004595430.1|	-	0.018	15.2	0.9	0.38	11.0	0.0	3.1	3	0	0	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
AlaDh_PNT_C	PF01262.21	gi|336252323|ref|YP_004595430.1|	-	0.022	14.1	1.2	0.033	13.5	1.2	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|336252323|ref|YP_004595430.1|	-	0.029	13.6	0.5	0.047	12.9	0.5	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|336252323|ref|YP_004595430.1|	-	0.038	12.8	0.5	0.061	12.2	0.5	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_binding_9	PF13454.6	gi|336252323|ref|YP_004595430.1|	-	0.13	12.2	2.6	0.44	10.5	0.7	2.5	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Usp	PF00582.26	gi|336252324|ref|YP_004595431.1|	-	5.3e-35	121.0	0.8	6e-35	120.8	0.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
TauE	PF01925.19	gi|336252325|ref|YP_004595432.1|	-	4.3e-29	101.8	43.2	5.4e-29	101.5	43.2	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
AI-2E_transport	PF01594.16	gi|336252326|ref|YP_004595433.1|	-	5.2e-35	121.1	28.6	6.4e-35	120.8	28.6	1.0	1	0	0	1	1	1	1	AI-2E	family	transporter
Nramp	PF01566.18	gi|336252327|ref|YP_004595434.1|	-	2.7e-34	118.7	25.9	2.7e-34	118.7	25.9	1.5	1	1	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
DNA_gyraseB	PF00204.25	gi|336252328|ref|YP_004595435.1|	-	4.4e-62	208.6	1.5	8.8e-62	207.6	1.5	1.5	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.21	gi|336252328|ref|YP_004595435.1|	-	2.9e-29	101.0	0.0	5.9e-29	100.0	0.0	1.5	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.26	gi|336252328|ref|YP_004595435.1|	-	8.8e-24	84.2	0.1	2.8e-23	82.6	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim	PF01751.22	gi|336252328|ref|YP_004595435.1|	-	4.6e-18	65.3	0.0	1.3e-17	63.9	0.0	1.8	1	0	0	1	1	1	1	Toprim	domain
HATPase_c_3	PF13589.6	gi|336252328|ref|YP_004595435.1|	-	0.0017	18.2	0.0	0.0035	17.2	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DNA_topoisoIV	PF00521.20	gi|336252329|ref|YP_004595436.1|	-	1e-156	522.2	0.0	1.2e-156	521.9	0.0	1.1	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.13	gi|336252329|ref|YP_004595436.1|	-	5.5e-77	253.1	14.9	5.4e-14	51.4	0.2	6.4	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
IKI3	PF04762.12	gi|336252329|ref|YP_004595436.1|	-	0.0022	16.1	0.2	0.0097	14.0	0.0	2.0	1	1	0	2	2	2	1	IKI3	family
DUF745	PF05335.13	gi|336252329|ref|YP_004595436.1|	-	0.063	13.0	3.8	0.11	12.2	3.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
HrcA_DNA-bdg	PF03444.15	gi|336252330|ref|YP_004595437.1|	-	7.9e-37	124.8	0.1	1.1e-36	124.3	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|336252330|ref|YP_004595437.1|	-	1.1e-08	35.3	0.0	1.9e-08	34.6	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|336252330|ref|YP_004595437.1|	-	1.4e-06	28.2	0.0	2.2e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|336252330|ref|YP_004595437.1|	-	0.026	14.4	0.0	0.047	13.6	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336252330|ref|YP_004595437.1|	-	0.033	14.2	0.0	0.065	13.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|336252330|ref|YP_004595437.1|	-	0.065	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_24	PF13412.6	gi|336252330|ref|YP_004595437.1|	-	0.074	12.6	0.3	0.16	11.5	0.3	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Fe_dep_repr_C	PF02742.15	gi|336252331|ref|YP_004595438.1|	-	1.7e-28	98.5	0.7	3.3e-28	97.6	0.7	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|336252331|ref|YP_004595438.1|	-	2.7e-20	72.3	0.4	6e-20	71.2	0.4	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.14	gi|336252331|ref|YP_004595438.1|	-	6.9e-13	48.7	0.7	2.1e-12	47.1	0.1	2.0	2	0	0	2	2	2	1	FeoA	domain
MarR	PF01047.22	gi|336252331|ref|YP_004595438.1|	-	4.6e-09	36.1	0.0	9.5e-09	35.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336252331|ref|YP_004595438.1|	-	1.5e-08	34.4	0.0	5.1e-08	32.7	0.0	1.9	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336252331|ref|YP_004595438.1|	-	5.6e-07	29.0	0.2	1.2e-06	27.9	0.0	1.7	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|336252331|ref|YP_004595438.1|	-	9.3e-06	25.5	0.1	2e-05	24.5	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.9	gi|336252331|ref|YP_004595438.1|	-	3.8e-05	23.7	0.2	8.5e-05	22.6	0.1	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.19	gi|336252331|ref|YP_004595438.1|	-	4e-05	23.4	0.0	9.2e-05	22.3	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|336252331|ref|YP_004595438.1|	-	4e-05	23.9	0.1	9.6e-05	22.7	0.1	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
GntR	PF00392.21	gi|336252331|ref|YP_004595438.1|	-	7.3e-05	22.3	0.0	0.00019	21.0	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|336252331|ref|YP_004595438.1|	-	9.3e-05	22.8	0.2	0.00024	21.6	0.2	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|336252331|ref|YP_004595438.1|	-	0.00013	21.7	0.0	0.0006	19.6	0.0	2.2	2	0	0	2	2	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336252331|ref|YP_004595438.1|	-	0.00014	21.9	0.0	0.002	18.1	0.0	2.7	3	1	0	3	3	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252331|ref|YP_004595438.1|	-	0.00016	21.5	0.0	0.00047	20.0	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HrcA_DNA-bdg	PF03444.15	gi|336252331|ref|YP_004595438.1|	-	0.0018	17.9	0.0	0.0032	17.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_11	PF08279.12	gi|336252331|ref|YP_004595438.1|	-	0.0026	17.7	0.1	0.0048	16.8	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.16	gi|336252331|ref|YP_004595438.1|	-	0.0028	18.0	0.1	0.006	16.9	0.1	1.6	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_12	PF08461.10	gi|336252331|ref|YP_004595438.1|	-	0.0036	17.2	0.2	0.0097	15.8	0.2	1.8	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_1	PF00126.27	gi|336252331|ref|YP_004595438.1|	-	0.0049	16.8	0.0	0.015	15.2	0.0	1.8	1	1	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HxlR	PF01638.17	gi|336252331|ref|YP_004595438.1|	-	0.0084	15.9	0.1	0.019	14.8	0.1	1.7	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_23	PF13384.6	gi|336252331|ref|YP_004595438.1|	-	0.0088	15.8	0.0	0.059	13.2	0.0	2.4	2	1	1	3	3	3	1	Homeodomain-like	domain
HTH_45	PF14947.6	gi|336252331|ref|YP_004595438.1|	-	0.012	15.5	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
FeoC	PF09012.10	gi|336252331|ref|YP_004595438.1|	-	0.014	15.5	0.0	0.03	14.4	0.0	1.5	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF4423	PF14394.6	gi|336252331|ref|YP_004595438.1|	-	0.025	14.3	0.0	0.039	13.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Topoisom_bac	PF01131.20	gi|336252331|ref|YP_004595438.1|	-	0.025	13.6	0.0	0.042	12.9	0.0	1.3	1	0	0	1	1	1	0	DNA	topoisomerase
Put_DNA-bind_N	PF06971.13	gi|336252331|ref|YP_004595438.1|	-	0.029	14.4	0.0	0.081	13.0	0.0	1.8	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_AsnC-type	PF13404.6	gi|336252331|ref|YP_004595438.1|	-	0.074	12.9	0.1	0.18	11.6	0.0	1.8	2	0	0	2	2	1	0	AsnC-type	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|336252331|ref|YP_004595438.1|	-	0.077	12.8	0.0	0.42	10.4	0.0	2.1	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_13	PF11972.8	gi|336252331|ref|YP_004595438.1|	-	0.082	13.0	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|336252331|ref|YP_004595438.1|	-	0.11	11.9	0.2	40	3.7	0.0	3.5	4	0	0	4	4	4	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_10	PF04967.12	gi|336252331|ref|YP_004595438.1|	-	0.17	11.7	0.0	0.34	10.7	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Arginase	PF00491.21	gi|336252332|ref|YP_004595439.1|	-	9.7e-77	258.2	2.2	1.1e-76	258.0	2.2	1.0	1	0	0	1	1	1	1	Arginase	family
Pyr_redox_2	PF07992.14	gi|336252333|ref|YP_004595440.1|	-	1.5e-41	142.6	0.1	1.8e-41	142.3	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336252333|ref|YP_004595440.1|	-	8.6e-10	39.0	0.7	3.1e-08	34.1	0.0	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|336252333|ref|YP_004595440.1|	-	0.00021	21.3	1.1	0.73	9.8	0.0	3.1	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Spore_SspJ	PF09575.10	gi|336252333|ref|YP_004595440.1|	-	0.25	11.8	4.0	1.1	9.6	0.1	3.2	3	0	0	3	3	3	0	Small	spore	protein	J	(Spore_SspJ)
Hexapep_2	PF14602.6	gi|336252334|ref|YP_004595441.1|	-	8.5e-08	31.8	4.7	4.3e-07	29.6	0.4	2.7	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
Hexapep	PF00132.24	gi|336252334|ref|YP_004595441.1|	-	2.5e-07	30.2	0.3	2.5e-07	30.2	0.3	2.9	4	0	0	4	4	4	1	Bacterial	transferase	hexapeptide	(six	repeats)
Nmad3	PF18754.1	gi|336252335|ref|YP_004595442.1|	-	5.3e-36	124.5	0.0	6.1e-36	124.3	0.0	1.0	1	0	0	1	1	1	1	Nucleotide	modification	associated	domain	3
TraW_N	PF12477.8	gi|336252335|ref|YP_004595442.1|	-	0.17	11.8	0.3	0.33	10.9	0.3	1.4	1	0	0	1	1	1	0	Sex	factor	F	TraW	protein	N	terminal
TruB_N	PF01509.18	gi|336252338|ref|YP_004595445.1|	-	3.9e-21	76.0	0.3	9.4e-13	48.8	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
TruB_C_2	PF16198.5	gi|336252338|ref|YP_004595445.1|	-	2.3e-18	66.1	0.0	4.5e-18	65.2	0.0	1.5	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
PUA	PF01472.20	gi|336252338|ref|YP_004595445.1|	-	1.5e-09	37.7	0.2	2.9e-09	36.8	0.2	1.4	1	0	0	1	1	1	1	PUA	domain
DKCLD	PF08068.12	gi|336252338|ref|YP_004595445.1|	-	1.1e-08	35.1	0.1	2.1e-08	34.1	0.1	1.5	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
DUF3701	PF12482.8	gi|336252338|ref|YP_004595445.1|	-	0.0042	17.1	0.1	0.012	15.7	0.0	1.8	2	0	0	2	2	2	1	Phage	integrase	protein
Cytidylate_kin2	PF13189.6	gi|336252339|ref|YP_004595446.1|	-	2.7e-21	76.5	0.3	3.4e-19	69.7	0.3	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|336252339|ref|YP_004595446.1|	-	1.4e-16	61.3	0.1	1.7e-16	60.9	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|336252339|ref|YP_004595446.1|	-	4.3e-13	49.8	0.0	7.4e-13	49.1	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|336252339|ref|YP_004595446.1|	-	1.1e-09	38.3	0.5	0.00027	20.8	0.0	2.1	1	1	1	2	2	2	2	Cytidylate	kinase
ADK	PF00406.22	gi|336252339|ref|YP_004595446.1|	-	2.3e-07	31.0	0.0	5e-07	29.9	0.0	1.5	1	1	0	1	1	1	1	Adenylate	kinase
AAA_33	PF13671.6	gi|336252339|ref|YP_004595446.1|	-	1.3e-06	28.7	0.2	1.2e-05	25.5	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|336252339|ref|YP_004595446.1|	-	0.00051	20.3	0.1	0.0015	18.8	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336252339|ref|YP_004595446.1|	-	0.0022	18.4	0.9	0.0035	17.8	0.9	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336252339|ref|YP_004595446.1|	-	0.0034	17.6	0.0	0.0056	17.0	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|336252339|ref|YP_004595446.1|	-	0.0074	16.7	0.0	0.011	16.1	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SKI	PF01202.22	gi|336252339|ref|YP_004595446.1|	-	0.0096	16.1	0.5	0.077	13.1	0.5	2.1	1	1	0	1	1	1	1	Shikimate	kinase
KTI12	PF08433.10	gi|336252339|ref|YP_004595446.1|	-	0.024	14.1	0.0	0.032	13.7	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Thymidylate_kin	PF02223.17	gi|336252339|ref|YP_004595446.1|	-	0.024	14.3	0.1	5	6.8	0.0	2.4	2	1	1	3	3	3	0	Thymidylate	kinase
Zeta_toxin	PF06414.12	gi|336252339|ref|YP_004595446.1|	-	0.027	13.7	0.0	0.07	12.4	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
AAA_30	PF13604.6	gi|336252339|ref|YP_004595446.1|	-	0.054	13.2	0.3	0.71	9.6	0.1	2.2	1	1	1	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|336252339|ref|YP_004595446.1|	-	0.059	13.8	0.0	0.093	13.1	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
AAA_5	PF07728.14	gi|336252339|ref|YP_004595446.1|	-	0.063	13.3	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
dNK	PF01712.19	gi|336252339|ref|YP_004595446.1|	-	0.083	12.7	0.0	0.21	11.4	0.0	1.7	2	0	0	2	2	2	0	Deoxynucleoside	kinase
ABC_tran	PF00005.27	gi|336252339|ref|YP_004595446.1|	-	0.16	12.5	0.0	0.21	12.1	0.0	1.4	1	1	0	1	1	1	0	ABC	transporter
Rad17	PF03215.15	gi|336252339|ref|YP_004595446.1|	-	0.18	11.7	0.0	0.27	11.2	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
EMC3_TMCO1	PF01956.16	gi|336252340|ref|YP_004595447.1|	-	7.7e-41	139.7	3.8	1.1e-40	139.2	3.8	1.2	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
DUF2937	PF11157.8	gi|336252340|ref|YP_004595447.1|	-	7.8e-05	22.4	0.3	0.19	11.4	1.4	2.5	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF2937)
Pinin_SDK_memA	PF04696.13	gi|336252340|ref|YP_004595447.1|	-	0.0033	17.5	0.3	0.0055	16.8	0.3	1.4	1	0	0	1	1	1	1	pinin/SDK/memA/	protein	conserved	region
DUF4746	PF15928.5	gi|336252340|ref|YP_004595447.1|	-	0.019	14.4	0.3	0.036	13.5	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4746)
HemX	PF04375.14	gi|336252340|ref|YP_004595447.1|	-	0.022	14.0	0.4	0.044	13.1	0.4	1.4	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Tho2	PF11262.8	gi|336252340|ref|YP_004595447.1|	-	0.049	12.8	1.1	0.077	12.2	1.1	1.2	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
Golgin_A5	PF09787.9	gi|336252340|ref|YP_004595447.1|	-	0.074	12.5	7.9	0.11	11.9	7.9	1.2	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
60KD_IMP	PF02096.20	gi|336252340|ref|YP_004595447.1|	-	0.081	12.8	8.9	5.9	6.8	8.9	2.3	1	1	0	1	1	1	0	60Kd	inner	membrane	protein
T3SS_needle_F	PF09392.10	gi|336252340|ref|YP_004595447.1|	-	0.13	12.5	1.7	1.2	9.4	0.2	3.0	2	1	2	4	4	4	0	Type	III	secretion	needle	MxiH,	YscF,	SsaG,	EprI,	PscF,	EscF
DUF4407	PF14362.6	gi|336252340|ref|YP_004595447.1|	-	0.2	11.0	1.0	0.36	10.1	1.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF4175	PF13779.6	gi|336252340|ref|YP_004595447.1|	-	0.22	9.4	8.8	0.4	8.5	8.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
DUF4199	PF13858.6	gi|336252340|ref|YP_004595447.1|	-	0.54	10.6	8.9	0.97	9.8	7.1	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
MIF4G_like_2	PF09090.11	gi|336252340|ref|YP_004595447.1|	-	0.58	9.6	5.3	0.42	10.1	2.7	1.8	2	0	0	2	2	2	0	MIF4G	like
CCDC-167	PF15188.6	gi|336252340|ref|YP_004595447.1|	-	0.86	10.0	5.0	0.37	11.2	1.3	2.1	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
Helo_like_N	PF17111.5	gi|336252340|ref|YP_004595447.1|	-	0.94	8.8	4.0	0.78	9.1	2.2	1.6	2	0	0	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
Remorin_C	PF03763.13	gi|336252340|ref|YP_004595447.1|	-	1	9.3	10.6	0.22	11.4	6.8	1.8	2	0	0	2	2	2	0	Remorin,	C-terminal	region
Stevor	PF17410.2	gi|336252340|ref|YP_004595447.1|	-	1.6	8.2	3.7	2.9	7.4	3.7	1.3	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
ABC_tran_CTD	PF16326.5	gi|336252340|ref|YP_004595447.1|	-	3.4	8.0	16.4	0.46	10.8	3.4	2.9	3	0	0	3	3	3	0	ABC	transporter	C-terminal	domain
Latarcin	PF10279.9	gi|336252340|ref|YP_004595447.1|	-	4.6	7.7	13.4	3.7	8.0	7.6	2.9	2	1	1	3	3	3	0	Latarcin	precursor
Ntox1	PF15500.6	gi|336252340|ref|YP_004595447.1|	-	6.6	7.2	6.3	2.4	8.5	3.1	1.8	2	0	0	2	2	2	0	Putative	RNase-like	toxin,	toxin_1
VWA	PF00092.28	gi|336252341|ref|YP_004595448.1|	-	3.3e-18	66.5	1.1	1.1e-17	64.8	1.1	1.9	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|336252341|ref|YP_004595448.1|	-	5.3e-11	43.1	0.1	1.2e-10	42.0	0.1	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|336252341|ref|YP_004595448.1|	-	0.00022	21.2	0.0	0.00084	19.3	0.0	2.0	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Pilin_N	PF07790.11	gi|336252341|ref|YP_004595448.1|	-	0.0024	18.7	2.6	0.0044	17.9	1.3	2.2	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
VWA_CoxE	PF05762.14	gi|336252341|ref|YP_004595448.1|	-	0.014	14.8	0.2	0.57	9.5	0.0	2.2	2	0	0	2	2	2	0	VWA	domain	containing	CoxE-like	protein
Bactofilin	PF04519.13	gi|336252341|ref|YP_004595448.1|	-	0.026	14.8	7.3	0.81	10.0	0.1	3.7	2	1	1	3	3	3	0	Polymer-forming	cytoskeletal
Bactofilin	PF04519.13	gi|336252342|ref|YP_004595449.1|	-	0.24	11.7	2.8	26	5.2	0.0	3.4	3	0	0	3	3	3	0	Polymer-forming	cytoskeletal
ADK	PF00406.22	gi|336252343|ref|YP_004595450.1|	-	5.3e-46	156.5	0.0	6.5e-46	156.2	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|336252343|ref|YP_004595450.1|	-	4e-24	85.6	0.7	9.8e-24	84.3	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|336252343|ref|YP_004595450.1|	-	4.7e-08	33.6	0.1	1.3e-07	32.2	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|336252343|ref|YP_004595450.1|	-	1.7e-05	25.0	0.1	0.00098	19.3	0.0	2.5	1	1	2	3	3	3	1	AAA	domain
PduV-EutP	PF10662.9	gi|336252343|ref|YP_004595450.1|	-	0.0062	16.3	0.0	0.01	15.6	0.0	1.3	1	0	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
Thymidylate_kin	PF02223.17	gi|336252343|ref|YP_004595450.1|	-	0.012	15.3	3.3	12	5.5	0.3	3.1	3	0	0	3	3	3	0	Thymidylate	kinase
ADK_lid	PF05191.14	gi|336252343|ref|YP_004595450.1|	-	0.023	14.7	0.3	0.11	12.5	0.3	2.1	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Zeta_toxin	PF06414.12	gi|336252343|ref|YP_004595450.1|	-	0.076	12.3	0.1	0.19	11.0	0.1	1.8	1	1	0	1	1	1	0	Zeta	toxin
Ploopntkinase3	PF18751.1	gi|336252343|ref|YP_004595450.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
dNK	PF01712.19	gi|336252343|ref|YP_004595450.1|	-	0.16	11.8	1.2	6.3	6.6	0.0	2.8	2	1	1	3	3	3	0	Deoxynucleoside	kinase
COX2	PF00116.20	gi|336252345|ref|YP_004595452.1|	-	8.3e-16	58.0	0.0	1.8e-15	56.9	0.0	1.5	2	0	0	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
DUF5048	PF16467.5	gi|336252345|ref|YP_004595452.1|	-	0.008	16.4	0.0	0.02	15.2	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF5048)
FixH	PF05751.11	gi|336252345|ref|YP_004595452.1|	-	0.017	15.1	0.3	0.32	11.0	0.1	2.3	2	0	0	2	2	2	0	FixH
Cupredoxin_1	PF13473.6	gi|336252345|ref|YP_004595452.1|	-	0.023	14.8	0.0	0.29	11.3	0.0	2.4	2	1	0	2	2	2	0	Cupredoxin-like	domain
UL2	PF08196.11	gi|336252345|ref|YP_004595452.1|	-	0.15	12.0	0.2	0.46	10.5	0.0	1.9	2	0	0	2	2	2	0	UL2	protein
COX1	PF00115.20	gi|336252346|ref|YP_004595453.1|	-	2e-124	415.7	77.8	2e-124	415.7	77.8	3.0	2	1	1	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.18	gi|336252346|ref|YP_004595453.1|	-	6.4e-20	72.1	20.4	6.4e-20	72.1	20.4	3.1	3	0	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
Peptidase_S8	PF00082.22	gi|336252347|ref|YP_004595454.1|	-	4.7e-47	160.7	2.8	1e-46	159.6	2.8	1.6	1	0	0	1	1	1	1	Subtilase	family
Blo-t-5	PF11642.8	gi|336252347|ref|YP_004595454.1|	-	0.23	11.4	0.0	0.38	10.7	0.0	1.2	1	0	0	1	1	1	0	Mite	allergen	Blo	t	5
TPPK_C	PF12555.8	gi|336252347|ref|YP_004595454.1|	-	1.5	8.9	4.7	1.2	9.2	0.1	2.7	2	0	0	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
COX4_pro	PF03626.14	gi|336252348|ref|YP_004595455.1|	-	3.3e-07	30.6	11.0	4e-07	30.4	11.0	1.1	1	0	0	1	1	1	1	Prokaryotic	Cytochrome	C	oxidase	subunit	IV
DUF4793	PF16041.5	gi|336252348|ref|YP_004595455.1|	-	0.26	11.5	0.4	0.26	11.5	0.4	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4793)
AAA_14	PF13173.6	gi|336252349|ref|YP_004595456.1|	-	6.5e-12	45.6	0.0	1e-11	45.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.6	gi|336252349|ref|YP_004595456.1|	-	1.5e-06	28.4	0.0	3e-06	27.4	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
AAA_19	PF13245.6	gi|336252349|ref|YP_004595456.1|	-	0.0013	19.0	0.0	0.0034	17.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|336252349|ref|YP_004595456.1|	-	0.0026	17.4	0.0	0.022	14.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF853	PF05872.12	gi|336252349|ref|YP_004595456.1|	-	0.0041	15.8	0.0	0.0065	15.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF853)
NACHT	PF05729.12	gi|336252349|ref|YP_004595456.1|	-	0.0045	16.9	0.0	0.0085	16.0	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
HTH_Mga	PF08280.11	gi|336252349|ref|YP_004595456.1|	-	0.0067	16.4	0.1	0.015	15.3	0.1	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_11	PF08279.12	gi|336252349|ref|YP_004595456.1|	-	0.0093	15.9	0.0	0.026	14.5	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
AAA_30	PF13604.6	gi|336252349|ref|YP_004595456.1|	-	0.013	15.2	0.0	0.03	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|336252349|ref|YP_004595456.1|	-	0.015	15.7	0.1	0.059	13.7	0.1	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
UvrD-helicase	PF00580.21	gi|336252349|ref|YP_004595456.1|	-	0.04	13.4	0.0	0.068	12.7	0.0	1.3	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
Viral_helicase1	PF01443.18	gi|336252349|ref|YP_004595456.1|	-	0.048	13.4	0.0	0.08	12.7	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_22	PF13401.6	gi|336252349|ref|YP_004595456.1|	-	0.062	13.6	0.0	0.86	9.9	0.0	2.2	1	1	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|336252349|ref|YP_004595456.1|	-	0.071	12.3	0.0	0.12	11.5	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
ResIII	PF04851.15	gi|336252349|ref|YP_004595456.1|	-	0.077	13.0	0.0	0.81	9.7	0.0	2.1	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
RNA_helicase	PF00910.22	gi|336252349|ref|YP_004595456.1|	-	0.1	13.0	0.0	0.76	10.2	0.0	2.2	2	0	0	2	2	2	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|336252349|ref|YP_004595456.1|	-	0.11	11.8	0.0	0.2	10.9	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|336252349|ref|YP_004595456.1|	-	0.11	13.0	0.0	0.21	12.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SSE	PF00437.20	gi|336252349|ref|YP_004595456.1|	-	0.15	11.1	0.0	0.25	10.4	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RuvB_C	PF05491.13	gi|336252349|ref|YP_004595456.1|	-	0.15	11.9	0.0	0.36	10.7	0.0	1.6	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
FtsK_SpoIIIE	PF01580.18	gi|336252349|ref|YP_004595456.1|	-	0.19	11.0	0.0	0.35	10.2	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF2075	PF09848.9	gi|336252349|ref|YP_004595456.1|	-	0.23	10.7	0.0	0.37	10.0	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Metallophos	PF00149.28	gi|336252350|ref|YP_004595457.1|	-	8e-14	52.6	0.6	1.4e-13	51.9	0.6	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|336252350|ref|YP_004595457.1|	-	6.2e-08	33.0	5.7	6.5e-08	32.9	2.1	2.4	2	1	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
HGTP_anticodon	PF03129.20	gi|336252350|ref|YP_004595457.1|	-	0.027	14.6	0.2	0.3	11.3	0.0	2.2	2	0	0	2	2	2	0	Anticodon	binding	domain
AAA_23	PF13476.6	gi|336252351|ref|YP_004595458.1|	-	8.6e-17	62.3	18.2	8.6e-17	62.3	18.2	8.1	1	1	4	5	5	1	1	AAA	domain
AAA_15	PF13175.6	gi|336252351|ref|YP_004595458.1|	-	1.4e-10	41.5	2.6	1.4e-10	41.5	2.6	4.2	2	2	1	3	3	1	1	AAA	ATPase	domain
Spc7	PF08317.11	gi|336252351|ref|YP_004595458.1|	-	2e-09	36.8	128.5	0.0013	17.7	13.4	6.9	3	2	4	7	7	7	5	Spc7	kinetochore	protein
AAA_27	PF13514.6	gi|336252351|ref|YP_004595458.1|	-	1.1e-07	31.6	0.2	1.1e-07	31.6	0.2	6.6	5	3	4	9	9	9	1	AAA	domain
MscS_porin	PF12795.7	gi|336252351|ref|YP_004595458.1|	-	2.3e-07	30.6	111.5	0.0039	16.8	22.6	7.0	2	2	5	7	7	7	4	Mechanosensitive	ion	channel	porin	domain
AAA_29	PF13555.6	gi|336252351|ref|YP_004595458.1|	-	4.1e-07	29.6	0.0	8.1e-07	28.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|336252351|ref|YP_004595458.1|	-	4.7e-07	30.0	0.0	1.5e-06	28.3	0.0	1.9	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
TPR_MLP1_2	PF07926.12	gi|336252351|ref|YP_004595458.1|	-	7.5e-07	29.3	142.2	0.0003	20.9	8.7	10.4	3	2	6	10	10	9	5	TPR/MLP1/MLP2-like	protein
FliJ	PF02050.16	gi|336252351|ref|YP_004595458.1|	-	4e-05	23.8	91.9	0.13	12.5	1.8	9.1	3	2	6	10	10	10	6	Flagellar	FliJ	protein
Atg14	PF10186.9	gi|336252351|ref|YP_004595458.1|	-	0.00018	20.7	87.5	0.041	13.0	9.2	7.0	2	2	4	6	6	6	5	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_13	PF13166.6	gi|336252351|ref|YP_004595458.1|	-	0.00028	19.7	99.7	0.0091	14.7	10.8	6.3	2	1	3	6	6	6	2	AAA	domain
CENP-F_leu_zip	PF10473.9	gi|336252351|ref|YP_004595458.1|	-	0.00034	20.7	11.0	0.00034	20.7	11.0	8.2	2	2	7	9	9	7	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Exonuc_VII_L	PF02601.15	gi|336252351|ref|YP_004595458.1|	-	0.00035	20.2	62.8	0.02	14.4	2.8	5.4	1	1	2	3	3	2	1	Exonuclease	VII,	large	subunit
Prefoldin_2	PF01920.20	gi|336252351|ref|YP_004595458.1|	-	0.00071	19.5	9.1	0.00071	19.5	9.1	13.6	5	3	5	12	12	12	2	Prefoldin	subunit
Filament	PF00038.21	gi|336252351|ref|YP_004595458.1|	-	0.0017	18.0	123.0	0.15	11.7	9.0	7.7	1	1	5	6	6	6	3	Intermediate	filament	protein
Fib_alpha	PF08702.10	gi|336252351|ref|YP_004595458.1|	-	0.0029	17.8	2.3	0.0029	17.8	2.3	8.4	5	2	3	9	9	7	1	Fibrinogen	alpha/beta	chain	family
MukB	PF04310.12	gi|336252351|ref|YP_004595458.1|	-	0.0033	17.3	1.9	0.018	14.8	0.0	3.2	2	0	0	2	2	2	1	MukB	N-terminal
EzrA	PF06160.12	gi|336252351|ref|YP_004595458.1|	-	0.004	15.4	100.7	0.072	11.3	13.2	6.4	2	2	3	5	5	5	4	Septation	ring	formation	regulator,	EzrA
AAA_21	PF13304.6	gi|336252351|ref|YP_004595458.1|	-	0.004	17.0	1.8	0.004	17.0	1.8	3.9	2	2	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|336252351|ref|YP_004595458.1|	-	0.0082	16.1	0.3	0.058	13.3	0.0	2.7	2	0	0	2	2	1	1	RsgA	GTPase
RNA_helicase	PF00910.22	gi|336252351|ref|YP_004595458.1|	-	0.021	15.2	0.4	0.47	10.9	0.0	2.8	2	1	0	2	2	2	0	RNA	helicase
Allexi_40kDa	PF05549.11	gi|336252351|ref|YP_004595458.1|	-	0.021	14.3	0.3	0.021	14.3	0.3	6.9	2	2	6	8	8	8	0	Allexivirus	40kDa	protein
V-SNARE_C	PF12352.8	gi|336252351|ref|YP_004595458.1|	-	0.025	14.9	0.0	0.025	14.9	0.0	4.6	6	1	0	6	6	2	0	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
DUF4407	PF14362.6	gi|336252351|ref|YP_004595458.1|	-	0.037	13.4	114.1	0.079	12.3	17.5	6.1	1	1	5	6	6	6	0	Domain	of	unknown	function	(DUF4407)
DUF724	PF05266.14	gi|336252351|ref|YP_004595458.1|	-	0.16	11.8	96.2	0.027	14.3	11.3	7.8	2	2	6	9	9	8	0	Protein	of	unknown	function	(DUF724)
AAA_22	PF13401.6	gi|336252351|ref|YP_004595458.1|	-	0.26	11.6	0.0	0.26	11.6	0.0	4.8	4	2	0	4	4	2	0	AAA	domain
AAA	PF00004.29	gi|336252351|ref|YP_004595458.1|	-	0.4	11.1	0.0	0.4	11.1	0.0	4.5	5	1	0	5	5	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|336252351|ref|YP_004595458.1|	-	0.47	10.6	0.0	0.47	10.6	0.0	5.4	4	2	3	7	7	7	0	AAA	domain
DUF3450	PF11932.8	gi|336252351|ref|YP_004595458.1|	-	0.61	9.4	110.1	0.072	12.4	4.0	8.4	2	2	5	8	8	8	0	Protein	of	unknown	function	(DUF3450)
Fusion_gly	PF00523.18	gi|336252351|ref|YP_004595458.1|	-	0.61	8.3	5.8	0.17	10.1	0.6	2.7	2	1	1	3	3	3	0	Fusion	glycoprotein	F0
Baculo_PEP_C	PF04513.12	gi|336252351|ref|YP_004595458.1|	-	0.74	9.9	39.9	0.087	12.9	4.0	8.6	3	2	2	8	8	8	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Fez1	PF06818.15	gi|336252351|ref|YP_004595458.1|	-	1.3	9.5	112.8	0.67	10.4	16.6	7.2	1	1	7	8	8	8	0	Fez1
Laminin_II	PF06009.12	gi|336252351|ref|YP_004595458.1|	-	1.7	8.7	74.3	0.014	15.4	5.1	8.6	4	2	6	10	10	9	0	Laminin	Domain	II
GAS	PF13851.6	gi|336252351|ref|YP_004595458.1|	-	2.9	7.2	103.6	0.067	12.5	8.5	7.4	3	2	3	7	7	7	0	Growth-arrest	specific	micro-tubule	binding
DUF1664	PF07889.12	gi|336252351|ref|YP_004595458.1|	-	4.1	7.4	74.7	0.7	9.9	7.2	9.7	3	2	7	10	10	9	0	Protein	of	unknown	function	(DUF1664)
ABC_tran	PF00005.27	gi|336252351|ref|YP_004595458.1|	-	4.9	7.7	38.4	0.0078	16.7	11.3	6.6	3	2	0	3	3	1	0	ABC	transporter
DUF4201	PF13870.6	gi|336252351|ref|YP_004595458.1|	-	7.4	6.3	86.4	1.4	8.6	2.8	8.5	3	2	1	6	6	6	0	Domain	of	unknown	function	(DUF4201)
DUF87	PF01935.17	gi|336252353|ref|YP_004595460.1|	-	7.1e-07	29.6	0.0	1.7e-06	28.3	0.0	1.6	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|336252353|ref|YP_004595460.1|	-	0.00013	20.7	0.4	0.0027	16.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|336252353|ref|YP_004595460.1|	-	0.00037	19.5	0.0	0.0073	15.3	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
FtsK_SpoIIIE	PF01580.18	gi|336252353|ref|YP_004595460.1|	-	0.021	14.2	0.0	0.29	10.5	0.0	2.1	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|336252353|ref|YP_004595460.1|	-	0.038	14.3	0.0	1.7	8.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Zot	PF05707.12	gi|336252353|ref|YP_004595460.1|	-	0.062	12.9	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
PLDc_2	PF13091.6	gi|336252354|ref|YP_004595461.1|	-	7.2e-07	29.2	0.0	1.7e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	PLD-like	domain
RE_NgoFVII	PF09565.10	gi|336252354|ref|YP_004595461.1|	-	0.0023	17.3	0.0	0.0037	16.6	0.0	1.3	1	0	0	1	1	1	1	NgoFVII	restriction	endonuclease
AAA_16	PF13191.6	gi|336252354|ref|YP_004595461.1|	-	0.0074	16.7	0.0	0.06	13.7	0.0	2.5	2	0	0	2	2	2	1	AAA	ATPase	domain
Tyr-DNA_phospho	PF06087.12	gi|336252354|ref|YP_004595461.1|	-	0.015	14.2	0.0	0.025	13.5	0.0	1.4	1	0	0	1	1	1	0	Tyrosyl-DNA	phosphodiesterase
AAA	PF00004.29	gi|336252354|ref|YP_004595461.1|	-	0.041	14.3	1.1	3.9	7.9	0.0	3.2	3	1	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|336252354|ref|YP_004595461.1|	-	0.045	14.0	0.0	0.22	11.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Piwi	PF02171.17	gi|336252355|ref|YP_004595462.1|	-	1.5e-15	57.2	0.0	2.7e-15	56.4	0.0	1.3	1	0	0	1	1	1	1	Piwi	domain
Phage_integrase	PF00589.22	gi|336252357|ref|YP_004595464.1|	-	3.8e-29	101.7	0.1	6.1e-29	101.0	0.1	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|336252357|ref|YP_004595464.1|	-	0.0083	16.4	0.0	0.023	15.0	0.0	1.8	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Ribosomal_L2	PF00181.23	gi|336252357|ref|YP_004595464.1|	-	0.03	14.3	0.2	0.25	11.3	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	Proteins	L2,	RNA	binding	domain
DUF4238	PF14022.6	gi|336252367|ref|YP_004595474.1|	-	5.1e-43	147.6	0.0	6e-43	147.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4238)
CARD_2	PF16739.5	gi|336252367|ref|YP_004595474.1|	-	0.13	12.2	0.1	0.25	11.3	0.1	1.5	1	0	0	1	1	1	0	Caspase	recruitment	domain
Resolvase	PF00239.21	gi|336252369|ref|YP_004595476.1|	-	2.9e-25	89.1	0.2	4.4e-25	88.5	0.2	1.3	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_23	PF13384.6	gi|336252369|ref|YP_004595476.1|	-	9.1e-05	22.1	0.1	0.00024	20.8	0.1	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
Ketoacyl-synt_C	PF02801.22	gi|336252369|ref|YP_004595476.1|	-	0.05	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Beta-ketoacyl	synthase,	C-terminal	domain
DUF3006	PF11213.8	gi|336252370|ref|YP_004595477.1|	-	0.025	14.8	0.0	0.033	14.4	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
ParBc	PF02195.18	gi|336252374|ref|YP_004595481.1|	-	4.5e-10	39.7	0.1	9.6e-10	38.6	0.1	1.6	1	0	0	1	1	1	1	ParB-like	nuclease	domain
N6_N4_Mtase	PF01555.18	gi|336252374|ref|YP_004595481.1|	-	8.9e-05	22.3	0.5	0.00024	20.9	0.0	2.0	2	0	0	2	2	2	1	DNA	methylase
Nop14	PF04147.12	gi|336252374|ref|YP_004595481.1|	-	0.0033	15.7	21.3	0.0046	15.3	21.3	1.1	1	0	0	1	1	1	1	Nop14-like	family
Methyltransf_11	PF08241.12	gi|336252374|ref|YP_004595481.1|	-	0.0063	17.1	0.2	1.8	9.3	0.1	2.9	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252374|ref|YP_004595481.1|	-	0.052	14.3	0.1	12	6.7	0.0	3.7	4	0	0	4	4	4	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|336252374|ref|YP_004595481.1|	-	0.055	13.1	0.1	3.2	7.4	0.0	2.4	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
DUF1819	PF08849.11	gi|336252375|ref|YP_004595482.1|	-	3.5e-05	23.7	0.0	6.3e-05	22.9	0.0	1.4	1	1	0	1	1	1	1	Putative	inner	membrane	protein	(DUF1819)
DUF3645	PF12359.8	gi|336252375|ref|YP_004595482.1|	-	0.15	11.5	0.1	0.26	10.7	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3645)
ABC_tran	PF00005.27	gi|336252376|ref|YP_004595483.1|	-	0.06	13.9	0.0	0.21	12.1	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
HWE_HK	PF07536.14	gi|336252376|ref|YP_004595483.1|	-	1.2	9.9	3.2	9.4	7.0	0.4	3.1	3	0	0	3	3	3	0	HWE	histidine	kinase
DUF1788	PF08747.11	gi|336252377|ref|YP_004595484.1|	-	2.1e-14	53.6	0.0	2.8e-14	53.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.16	gi|336252377|ref|YP_004595484.1|	-	0.0018	18.5	0.0	0.0028	17.9	0.0	1.3	1	0	0	1	1	1	1	PTS	system	fructose	IIA	component
Tautomerase	PF01361.21	gi|336252377|ref|YP_004595484.1|	-	0.11	12.5	0.4	0.32	10.9	0.3	1.8	2	0	0	2	2	2	0	Tautomerase	enzyme
AAA_22	PF13401.6	gi|336252378|ref|YP_004595485.1|	-	0.0032	17.7	0.1	7.3	6.9	0.0	4.1	3	1	0	3	3	3	2	AAA	domain
AAA_21	PF13304.6	gi|336252378|ref|YP_004595485.1|	-	0.04	13.7	0.3	1.6	8.5	0.0	2.9	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SKA2	PF16740.5	gi|336252378|ref|YP_004595485.1|	-	0.087	12.6	0.0	2.2	8.1	0.0	3.2	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
DUF948	PF06103.11	gi|336252378|ref|YP_004595485.1|	-	0.2	12.0	0.8	2.7	8.3	0.1	3.1	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
PaaB	PF06243.11	gi|336252379|ref|YP_004595486.1|	-	0.02	15.1	0.0	0.042	14.1	0.0	1.5	1	0	0	1	1	1	0	Phenylacetic	acid	degradation	B
TrmB	PF01978.19	gi|336252380|ref|YP_004595487.1|	-	4.8e-16	58.4	0.6	7.1e-07	29.0	0.0	2.5	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336252380|ref|YP_004595487.1|	-	9.2e-16	57.5	0.7	1.5e-08	34.4	0.3	2.5	2	0	0	2	2	2	2	MarR	family
MarR	PF01047.22	gi|336252380|ref|YP_004595487.1|	-	3.4e-13	49.3	0.1	2.5e-05	24.1	0.0	2.4	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.10	gi|336252380|ref|YP_004595487.1|	-	4.7e-11	42.3	2.9	3.4e-06	26.8	0.1	2.9	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252380|ref|YP_004595487.1|	-	5.9e-10	38.9	0.3	5.4e-05	23.0	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|336252380|ref|YP_004595487.1|	-	6.3e-10	38.5	0.1	0.00089	18.8	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|336252380|ref|YP_004595487.1|	-	6.4e-10	39.1	1.1	0.00061	19.9	0.3	2.6	2	0	0	2	2	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|336252380|ref|YP_004595487.1|	-	6.9e-09	35.9	0.4	0.00077	19.8	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_11	PF08279.12	gi|336252380|ref|YP_004595487.1|	-	1.2e-08	34.7	0.1	6.4e-05	22.8	0.0	2.7	2	0	0	2	2	2	2	HTH	domain
HTH_20	PF12840.7	gi|336252380|ref|YP_004595487.1|	-	4.7e-08	33.0	1.8	0.0024	17.9	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336252380|ref|YP_004595487.1|	-	2.7e-07	30.5	0.8	0.00041	20.3	0.0	3.0	3	0	0	3	3	3	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336252380|ref|YP_004595487.1|	-	4.6e-07	30.2	0.7	0.0054	17.2	0.2	2.5	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_29	PF13551.6	gi|336252380|ref|YP_004595487.1|	-	6.9e-06	26.0	0.2	0.0082	16.1	0.1	2.7	2	0	0	2	2	2	1	Winged	helix-turn	helix
GntR	PF00392.21	gi|336252380|ref|YP_004595487.1|	-	8.5e-06	25.3	0.3	0.032	13.9	0.0	3.1	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.6	gi|336252380|ref|YP_004595487.1|	-	0.00026	21.0	0.2	0.14	12.3	0.0	3.0	3	0	0	3	3	2	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|336252380|ref|YP_004595487.1|	-	0.00052	20.4	0.0	0.28	11.5	0.0	2.5	2	0	0	2	2	2	1	Penicillinase	repressor
HTH_23	PF13384.6	gi|336252380|ref|YP_004595487.1|	-	0.00098	18.9	0.2	1.9	8.4	0.0	2.7	2	0	0	2	2	2	2	Homeodomain-like	domain
DUF4423	PF14394.6	gi|336252380|ref|YP_004595487.1|	-	0.0021	17.8	0.1	2.3	7.9	0.1	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
HTH_45	PF14947.6	gi|336252380|ref|YP_004595487.1|	-	0.0042	17.0	0.0	0.03	14.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_1	PF00126.27	gi|336252380|ref|YP_004595487.1|	-	0.0052	16.7	0.9	0.25	11.3	0.2	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_AsnC-type	PF13404.6	gi|336252380|ref|YP_004595487.1|	-	0.008	16.0	2.3	0.073	12.9	0.1	2.7	3	0	0	3	3	2	1	AsnC-type	helix-turn-helix	domain
DUF2250	PF10007.9	gi|336252380|ref|YP_004595487.1|	-	0.0083	16.2	0.1	3	8.0	0.1	2.6	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
PaaX	PF07848.12	gi|336252380|ref|YP_004595487.1|	-	0.016	15.4	0.1	7.7	6.8	0.0	2.5	2	0	0	2	2	2	0	PaaX-like	protein
HTH_10	PF04967.12	gi|336252380|ref|YP_004595487.1|	-	0.021	14.6	0.0	3.5	7.5	0.0	3.0	3	0	0	3	3	3	0	HTH	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|336252380|ref|YP_004595487.1|	-	0.022	14.5	0.0	0.092	12.5	0.0	2.1	2	0	0	2	2	1	0	DeoR-like	helix-turn-helix	domain
FeoC	PF09012.10	gi|336252380|ref|YP_004595487.1|	-	0.029	14.4	0.4	0.19	11.8	0.1	2.3	3	0	0	3	3	2	0	FeoC	like	transcriptional	regulator
HTH_17	PF12728.7	gi|336252380|ref|YP_004595487.1|	-	0.048	13.8	0.2	5.3	7.3	0.0	3.1	3	0	0	3	3	2	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|336252380|ref|YP_004595487.1|	-	0.055	13.2	0.0	1.8	8.4	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
Phage_rep_org_N	PF09681.10	gi|336252380|ref|YP_004595487.1|	-	0.061	13.2	0.0	0.99	9.3	0.0	2.1	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_7	PF02796.15	gi|336252380|ref|YP_004595487.1|	-	0.064	13.3	0.0	0.4	10.8	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
YdaS_antitoxin	PF15943.5	gi|336252380|ref|YP_004595487.1|	-	0.065	13.1	0.1	17	5.4	0.0	3.0	3	0	0	3	3	3	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
z-alpha	PF02295.17	gi|336252380|ref|YP_004595487.1|	-	0.094	12.8	0.0	0.35	10.9	0.0	2.0	2	0	0	2	2	1	0	Adenosine	deaminase	z-alpha	domain
HTH_CodY	PF08222.11	gi|336252380|ref|YP_004595487.1|	-	0.11	12.1	0.0	6.9	6.3	0.0	2.3	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
Phage_rep_O	PF04492.13	gi|336252380|ref|YP_004595487.1|	-	0.11	13.1	0.0	0.55	10.8	0.0	2.1	2	0	0	2	2	2	0	Bacteriophage	replication	protein	O
LexA_DNA_bind	PF01726.16	gi|336252380|ref|YP_004595487.1|	-	0.13	12.0	0.0	1.7	8.5	0.0	2.4	2	0	0	2	2	2	0	LexA	DNA	binding	domain
SpoIIID	PF12116.8	gi|336252380|ref|YP_004595487.1|	-	0.15	12.1	0.0	0.8	9.8	0.0	2.2	2	1	1	3	3	1	0	Stage	III	sporulation	protein	D
DUF903	PF06004.12	gi|336252380|ref|YP_004595487.1|	-	0.18	11.7	0.1	2	8.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF903)
NTP_transf_5	PF14907.6	gi|336252381|ref|YP_004595488.1|	-	0.0025	17.5	0.8	0.0079	15.8	0.1	2.0	1	1	1	2	2	2	1	Uncharacterised	nucleotidyltransferase
Glyoxalase	PF00903.25	gi|336252381|ref|YP_004595488.1|	-	0.0051	17.0	0.1	0.078	13.2	0.0	2.5	2	2	1	3	3	3	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Rio2_N	PF09202.11	gi|336252381|ref|YP_004595488.1|	-	0.13	12.5	0.3	0.89	9.8	0.1	2.2	2	0	0	2	2	2	0	Rio2,	N-terminal
Phi-29_GP16_7	PF06720.11	gi|336252381|ref|YP_004595488.1|	-	0.43	10.4	6.1	0.4	10.5	2.3	2.6	1	1	2	3	3	3	0	Bacteriophage	phi-29	early	protein	GP16.7
YkuI_C	PF10388.9	gi|336252382|ref|YP_004595489.1|	-	0.026	14.3	0.0	0.045	13.6	0.0	1.3	1	0	0	1	1	1	0	EAL-domain	associated	signalling	protein	domain
HNH_repeat	PF18780.1	gi|336252383|ref|YP_004595490.1|	-	1.1e-05	25.1	0.4	0.0031	17.3	0.0	2.3	2	0	0	2	2	2	2	Homing	endonuclease	repeat
DUF3018	PF11455.8	gi|336252383|ref|YP_004595490.1|	-	0.024	14.6	0.4	0.21	11.5	0.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3018)
Sigma70_r3	PF04539.16	gi|336252383|ref|YP_004595490.1|	-	0.17	12.0	1.1	19	5.4	0.1	2.3	2	0	0	2	2	2	0	Sigma-70	region	3
NucS	PF01939.16	gi|336252384|ref|YP_004595491.1|	-	4.2e-05	23.0	0.0	7.5e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Endonuclease	NucS
DUF4868	PF16162.5	gi|336252385|ref|YP_004595492.1|	-	2.2e-19	70.1	0.3	3.4e-19	69.5	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4868)
Pox_A31	PF05771.11	gi|336252385|ref|YP_004595492.1|	-	0.076	13.0	0.7	0.62	10.1	0.1	2.4	2	1	0	2	2	2	0	Poxvirus	A31	protein
N6_Mtase	PF02384.16	gi|336252387|ref|YP_004595494.1|	-	4.4e-10	39.3	0.0	3e-05	23.4	0.0	3.1	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_31	PF13847.6	gi|336252387|ref|YP_004595494.1|	-	0.003	17.4	0.1	0.009	15.8	0.1	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|336252387|ref|YP_004595494.1|	-	0.0072	16.0	0.0	0.22	11.2	0.0	2.4	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
PSK_trans_fac	PF07704.11	gi|336252388|ref|YP_004595495.1|	-	0.34	11.7	1.8	0.54	11.1	0.7	1.8	2	0	0	2	2	2	0	Rv0623-like	transcription	factor
AAA	PF00004.29	gi|336252389|ref|YP_004595496.1|	-	6.5e-42	143.1	0.0	1.4e-41	142.0	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|336252389|ref|YP_004595496.1|	-	9.4e-07	28.5	0.1	2.6e-06	27.1	0.1	1.8	1	0	0	1	1	1	1	AAA+	lid	domain
RuvB_N	PF05496.12	gi|336252389|ref|YP_004595496.1|	-	1e-05	25.4	0.0	1.9e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|336252389|ref|YP_004595496.1|	-	1.2e-05	25.5	0.0	2.4e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|336252389|ref|YP_004595496.1|	-	5.7e-05	23.6	0.2	0.0012	19.3	0.2	2.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|336252389|ref|YP_004595496.1|	-	0.002	18.7	0.0	0.01	16.4	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|336252389|ref|YP_004595496.1|	-	0.0031	17.5	0.2	0.065	13.2	0.0	3.0	3	1	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|336252389|ref|YP_004595496.1|	-	0.005	17.2	0.0	0.011	16.1	0.0	1.6	1	0	0	1	1	1	1	RNA	helicase
TIP49	PF06068.13	gi|336252389|ref|YP_004595496.1|	-	0.0068	15.6	0.0	0.011	14.9	0.0	1.3	1	0	0	1	1	1	1	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|336252389|ref|YP_004595496.1|	-	0.01	16.1	0.1	0.48	10.7	0.0	2.5	1	1	1	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|336252389|ref|YP_004595496.1|	-	0.01	16.0	0.0	0.021	15.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|336252389|ref|YP_004595496.1|	-	0.033	13.9	0.0	0.068	12.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_3	PF07726.11	gi|336252389|ref|YP_004595496.1|	-	0.053	13.4	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|336252389|ref|YP_004595496.1|	-	0.056	13.2	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|336252389|ref|YP_004595496.1|	-	0.058	13.1	0.0	0.13	12.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|336252389|ref|YP_004595496.1|	-	0.071	13.0	0.0	5.1	6.9	0.0	2.2	1	1	1	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_11	PF13086.6	gi|336252389|ref|YP_004595496.1|	-	0.1	12.4	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|336252389|ref|YP_004595496.1|	-	0.11	12.2	0.0	11	5.6	0.0	2.4	1	1	1	2	2	2	0	Thymidylate	kinase
PglZ	PF08665.12	gi|336252390|ref|YP_004595497.1|	-	1.4e-09	38.3	0.0	2.8e-09	37.3	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
Helicase_C	PF00271.31	gi|336252392|ref|YP_004595499.1|	-	8.7e-23	80.8	0.0	2.1e-22	79.6	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|336252392|ref|YP_004595499.1|	-	2.9e-18	65.7	0.0	2.6e-16	59.3	0.0	2.4	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|336252392|ref|YP_004595499.1|	-	7.2e-12	45.6	0.0	2.1e-11	44.1	0.0	1.9	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|336252392|ref|YP_004595499.1|	-	1.5e-05	24.8	0.0	4e-05	23.5	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|336252392|ref|YP_004595499.1|	-	0.00024	20.3	0.1	0.00024	20.3	0.1	2.7	2	0	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|336252392|ref|YP_004595499.1|	-	0.00088	19.0	0.0	0.098	12.3	0.0	2.4	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
AAA_34	PF13872.6	gi|336252392|ref|YP_004595499.1|	-	0.0034	16.3	0.6	0.017	14.1	0.6	1.9	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
DUF2075	PF09848.9	gi|336252392|ref|YP_004595499.1|	-	0.076	12.2	3.2	0.078	12.2	0.0	2.6	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
KxDL	PF10241.9	gi|336252392|ref|YP_004595499.1|	-	0.33	11.3	1.9	9.1	6.6	1.6	2.9	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
Exonuc_VII_L	PF02601.15	gi|336252392|ref|YP_004595499.1|	-	7.2	6.1	11.0	0.35	10.4	2.4	2.8	3	1	0	3	3	3	0	Exonuclease	VII,	large	subunit
Atg14	PF10186.9	gi|336252392|ref|YP_004595499.1|	-	8.5	5.4	7.4	23	3.9	7.4	1.7	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Metallophos	PF00149.28	gi|336252394|ref|YP_004595501.1|	-	1.5e-13	51.7	0.7	7.5e-13	49.4	0.1	2.2	3	0	0	3	3	3	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|336252394|ref|YP_004595501.1|	-	7.8e-08	32.7	2.0	1.7e-07	31.6	2.1	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
RIG-I_C-RD	PF11648.8	gi|336252395|ref|YP_004595502.1|	-	0.008	16.4	0.1	0.014	15.6	0.1	1.4	1	0	0	1	1	1	1	C-terminal	domain	of	RIG-I
ESSS	PF10183.9	gi|336252395|ref|YP_004595502.1|	-	0.086	13.1	1.7	0.54	10.5	0.0	2.4	2	0	0	2	2	2	0	ESSS	subunit	of	NADH:ubiquinone	oxidoreductase	(complex	I)
Lar_restr_allev	PF14354.6	gi|336252397|ref|YP_004595504.1|	-	0.0029	17.9	0.8	0.0041	17.5	0.8	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
DinB	PF05163.12	gi|336252397|ref|YP_004595504.1|	-	0.029	14.3	0.2	0.032	14.2	0.2	1.0	1	0	0	1	1	1	0	DinB	family
zf-C2H2_3	PF13878.6	gi|336252397|ref|YP_004595504.1|	-	0.08	12.8	1.6	0.16	11.8	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Zn_Tnp_IS91	PF14319.6	gi|336252397|ref|YP_004595504.1|	-	0.15	12.1	4.9	0.22	11.6	3.2	1.8	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
Zn-ribbon_8	PF09723.10	gi|336252397|ref|YP_004595504.1|	-	6.2	7.0	6.8	2.7	8.2	2.5	2.3	2	2	0	2	2	2	0	Zinc	ribbon	domain
Anti-TRAP	PF15777.5	gi|336252398|ref|YP_004595505.1|	-	0.0071	16.3	0.9	0.0078	16.2	0.9	1.1	1	0	0	1	1	1	1	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
ScdA_N	PF04405.14	gi|336252400|ref|YP_004595507.1|	-	0.0052	16.4	0.2	0.14	11.8	0.0	2.7	3	0	0	3	3	3	1	Domain	of	Unknown	function	(DUF542)
TcdB_N	PF12918.7	gi|336252400|ref|YP_004595507.1|	-	0.038	14.3	0.1	0.32	11.3	0.1	2.2	2	0	0	2	2	2	0	TcdB	toxin	N-terminal	helical	domain
DUF2205	PF10224.9	gi|336252400|ref|YP_004595507.1|	-	0.075	13.0	0.9	0.075	13.0	0.9	2.3	2	0	0	2	2	2	0	Short	coiled-coil	protein
Rrf2	PF02082.20	gi|336252400|ref|YP_004595507.1|	-	0.1	13.0	0.0	1.3	9.4	0.0	2.3	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_Tnp_1	PF01527.20	gi|336252400|ref|YP_004595507.1|	-	0.38	11.1	0.0	0.38	11.1	0.0	3.5	3	2	0	3	3	3	0	Transposase
Arm-DNA-bind_5	PF17293.2	gi|336252400|ref|YP_004595507.1|	-	0.45	11.0	6.1	0.11	13.0	1.5	2.1	2	0	0	2	2	2	0	Arm	DNA-binding	domain
DUF4140	PF13600.6	gi|336252400|ref|YP_004595507.1|	-	1.3	9.5	6.8	7	7.2	0.8	2.6	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
CALCOCO1	PF07888.11	gi|336252401|ref|YP_004595508.1|	-	7.8e-06	25.0	12.3	1.1e-05	24.6	12.3	1.1	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
ATG16	PF08614.11	gi|336252401|ref|YP_004595508.1|	-	6.6e-05	23.2	10.5	9e-05	22.8	10.5	1.2	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
TPR_MLP1_2	PF07926.12	gi|336252401|ref|YP_004595508.1|	-	0.00037	20.6	9.6	0.00037	20.6	9.6	1.7	1	1	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
FapA	PF03961.13	gi|336252401|ref|YP_004595508.1|	-	0.00049	18.8	1.1	0.00059	18.6	1.1	1.1	1	0	0	1	1	1	1	Flagellar	Assembly	Protein	A
DUF4618	PF15397.6	gi|336252401|ref|YP_004595508.1|	-	0.00089	18.8	5.8	0.079	12.4	1.1	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4618)
Fez1	PF06818.15	gi|336252401|ref|YP_004595508.1|	-	0.0011	19.5	4.1	0.0013	19.2	4.1	1.2	1	0	0	1	1	1	1	Fez1
IFT57	PF10498.9	gi|336252401|ref|YP_004595508.1|	-	0.0017	17.4	7.1	0.0024	16.9	7.1	1.1	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
Snapin_Pallidin	PF14712.6	gi|336252401|ref|YP_004595508.1|	-	0.0031	17.9	5.6	0.073	13.5	1.1	2.3	1	1	1	2	2	2	1	Snapin/Pallidin
HALZ	PF02183.18	gi|336252401|ref|YP_004595508.1|	-	0.0033	17.6	1.3	0.0078	16.4	1.3	1.7	1	0	0	1	1	1	1	Homeobox	associated	leucine	zipper
DUF948	PF06103.11	gi|336252401|ref|YP_004595508.1|	-	0.0056	16.9	1.2	0.54	10.5	0.1	2.3	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
T3SSipB	PF16535.5	gi|336252401|ref|YP_004595508.1|	-	0.0066	16.9	0.4	0.012	16.1	0.4	1.4	1	0	0	1	1	1	1	Type	III	cell	invasion	protein	SipB
bZIP_1	PF00170.21	gi|336252401|ref|YP_004595508.1|	-	0.0086	16.1	5.6	0.0086	16.1	5.6	2.4	1	1	1	2	2	2	1	bZIP	transcription	factor
DUF812	PF05667.11	gi|336252401|ref|YP_004595508.1|	-	0.0087	15.0	3.9	0.01	14.8	3.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
Uso1_p115_C	PF04871.13	gi|336252401|ref|YP_004595508.1|	-	0.011	16.1	11.4	0.017	15.5	11.4	1.4	1	0	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Sigma70_ner	PF04546.13	gi|336252401|ref|YP_004595508.1|	-	0.012	15.5	6.9	0.016	15.1	6.9	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
FlaC_arch	PF05377.11	gi|336252401|ref|YP_004595508.1|	-	0.018	15.4	11.0	0.4	11.1	2.7	2.4	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
HAP1_N	PF04849.13	gi|336252401|ref|YP_004595508.1|	-	0.019	14.2	12.3	0.027	13.7	12.3	1.2	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
DUF1043	PF06295.12	gi|336252401|ref|YP_004595508.1|	-	0.021	14.8	0.8	0.033	14.2	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1043)
DUF1664	PF07889.12	gi|336252401|ref|YP_004595508.1|	-	0.022	14.8	4.7	0.069	13.2	4.7	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Tmemb_cc2	PF10267.9	gi|336252401|ref|YP_004595508.1|	-	0.025	13.7	6.8	0.032	13.4	6.8	1.2	1	0	0	1	1	1	0	Predicted	transmembrane	and	coiled-coil	2	protein
Fmp27_WPPW	PF10359.9	gi|336252401|ref|YP_004595508.1|	-	0.028	13.3	3.2	0.038	12.8	3.2	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
CENP-F_leu_zip	PF10473.9	gi|336252401|ref|YP_004595508.1|	-	0.037	14.1	14.5	0.069	13.2	14.5	1.4	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spc7	PF08317.11	gi|336252401|ref|YP_004595508.1|	-	0.041	12.8	12.6	0.059	12.2	12.6	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
HOOK	PF05622.12	gi|336252401|ref|YP_004595508.1|	-	0.048	11.8	10.3	0.061	11.5	10.3	1.0	1	0	0	1	1	1	0	HOOK	protein
Jnk-SapK_ap_N	PF09744.9	gi|336252401|ref|YP_004595508.1|	-	0.05	13.8	15.3	0.1	12.8	15.3	1.5	2	0	0	2	2	1	0	JNK_SAPK-associated	protein-1
RmuC	PF02646.16	gi|336252401|ref|YP_004595508.1|	-	0.063	12.4	5.1	0.2	10.8	3.0	2.0	1	1	1	2	2	2	0	RmuC	family
YabA	PF06156.13	gi|336252401|ref|YP_004595508.1|	-	0.064	13.9	10.5	0.13	12.9	8.6	2.1	1	1	1	2	2	2	0	Initiation	control	protein	YabA
DUF4337	PF14235.6	gi|336252401|ref|YP_004595508.1|	-	0.072	13.2	5.1	0.12	12.5	5.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
Prominin	PF05478.11	gi|336252401|ref|YP_004595508.1|	-	0.075	11.0	4.7	0.42	8.5	4.4	1.7	1	1	1	2	2	2	0	Prominin
DUF5082	PF16888.5	gi|336252401|ref|YP_004595508.1|	-	0.083	13.2	8.3	0.22	11.8	3.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5082)
MbeD_MobD	PF04899.12	gi|336252401|ref|YP_004595508.1|	-	0.098	12.8	0.8	0.23	11.6	0.8	1.7	1	0	0	1	1	1	0	MbeD/MobD	like
LMBR1	PF04791.16	gi|336252401|ref|YP_004595508.1|	-	0.11	11.4	0.3	0.12	11.3	0.3	1.0	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
DUF4407	PF14362.6	gi|336252401|ref|YP_004595508.1|	-	0.12	11.7	4.1	0.17	11.2	4.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Nup88	PF10168.9	gi|336252401|ref|YP_004595508.1|	-	0.14	9.9	5.8	0.18	9.6	5.8	1.0	1	0	0	1	1	1	0	Nuclear	pore	component
HemX	PF04375.14	gi|336252401|ref|YP_004595508.1|	-	0.15	11.3	5.2	0.23	10.7	5.2	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Sas10_Utp3	PF04000.15	gi|336252401|ref|YP_004595508.1|	-	0.16	12.7	1.1	2.7	8.7	0.2	2.3	2	0	0	2	2	2	0	Sas10/Utp3/C1D	family
Golgin_A5	PF09787.9	gi|336252401|ref|YP_004595508.1|	-	0.17	11.3	10.4	0.24	10.8	10.4	1.1	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
LPP	PF04728.13	gi|336252401|ref|YP_004595508.1|	-	0.17	12.3	4.0	3.5	8.1	0.6	2.4	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
Fungal_TACC	PF12709.7	gi|336252401|ref|YP_004595508.1|	-	0.18	12.3	9.0	0.058	13.8	5.3	2.0	1	1	1	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF3734	PF12536.8	gi|336252401|ref|YP_004595508.1|	-	0.2	12.0	2.7	3.9	7.8	0.3	2.4	2	0	0	2	2	2	0	Patatin	phospholipase
Atg14	PF10186.9	gi|336252401|ref|YP_004595508.1|	-	0.23	10.5	4.0	0.36	9.9	4.0	1.3	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF2203	PF09969.9	gi|336252401|ref|YP_004595508.1|	-	0.31	11.8	6.0	0.69	10.6	5.9	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF724	PF05266.14	gi|336252401|ref|YP_004595508.1|	-	0.33	10.8	7.1	0.54	10.1	7.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
HAUS6_N	PF14661.6	gi|336252401|ref|YP_004595508.1|	-	0.33	10.5	7.6	0.69	9.5	7.6	1.5	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
AAA_11	PF13086.6	gi|336252401|ref|YP_004595508.1|	-	0.34	10.7	3.5	0.44	10.3	3.5	1.1	1	0	0	1	1	1	0	AAA	domain
V_ATPase_I	PF01496.19	gi|336252401|ref|YP_004595508.1|	-	0.36	8.7	3.1	0.44	8.4	3.1	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Ax_dynein_light	PF10211.9	gi|336252401|ref|YP_004595508.1|	-	0.43	10.5	16.4	0.049	13.6	8.5	2.0	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
Kre28	PF17097.5	gi|336252401|ref|YP_004595508.1|	-	0.44	9.4	9.7	0.59	9.0	9.7	1.1	1	0	0	1	1	1	0	Spindle	pole	body	component
Fib_alpha	PF08702.10	gi|336252401|ref|YP_004595508.1|	-	0.45	10.7	6.2	1.7	8.8	6.3	1.8	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
DivIC	PF04977.15	gi|336252401|ref|YP_004595508.1|	-	0.47	10.3	12.1	0.16	11.8	4.6	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
DUF3450	PF11932.8	gi|336252401|ref|YP_004595508.1|	-	0.47	9.7	8.5	0.86	8.9	8.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
COG6	PF06419.11	gi|336252401|ref|YP_004595508.1|	-	0.63	8.2	6.3	0.83	7.8	2.2	1.9	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
Fzo_mitofusin	PF04799.13	gi|336252401|ref|YP_004595508.1|	-	0.64	9.6	7.4	0.67	9.5	2.7	2.1	1	1	0	2	2	2	0	fzo-like	conserved	region
UPF0242	PF06785.11	gi|336252401|ref|YP_004595508.1|	-	0.66	10.0	7.4	1.1	9.3	7.4	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Occludin_ELL	PF07303.13	gi|336252401|ref|YP_004595508.1|	-	0.73	10.6	7.0	0.39	11.5	2.1	2.6	3	1	1	4	4	2	0	Occludin	homology	domain
AAA_13	PF13166.6	gi|336252401|ref|YP_004595508.1|	-	0.78	8.3	7.3	0.98	8.0	7.3	1.1	1	0	0	1	1	1	0	AAA	domain
BST2	PF16716.5	gi|336252401|ref|YP_004595508.1|	-	0.84	10.3	7.0	9.3	6.9	6.7	2.2	1	1	0	1	1	1	0	Bone	marrow	stromal	antigen	2
KfrA_N	PF11740.8	gi|336252401|ref|YP_004595508.1|	-	0.87	10.3	7.0	4.5	8.0	5.2	2.5	2	1	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
ADIP	PF11559.8	gi|336252401|ref|YP_004595508.1|	-	0.93	9.6	8.8	1.4	9.0	8.8	1.2	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
GCIP	PF13324.6	gi|336252401|ref|YP_004595508.1|	-	1	8.9	7.7	1.5	8.4	7.7	1.1	1	0	0	1	1	1	0	Grap2	and	cyclin-D-interacting
YtxH	PF12732.7	gi|336252401|ref|YP_004595508.1|	-	1.2	9.7	6.7	66	4.1	6.7	2.6	1	1	0	1	1	1	0	YtxH-like	protein
CREPT	PF16566.5	gi|336252401|ref|YP_004595508.1|	-	1.3	9.2	6.1	2	8.6	6.1	1.3	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
DUF4446	PF14584.6	gi|336252401|ref|YP_004595508.1|	-	1.3	9.0	4.2	3.4	7.6	3.7	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
TMCO5	PF14992.6	gi|336252401|ref|YP_004595508.1|	-	1.6	8.3	10.9	2.2	7.8	10.9	1.1	1	0	0	1	1	1	0	TMCO5	family
Cauli_AT	PF03233.13	gi|336252401|ref|YP_004595508.1|	-	1.7	8.5	6.1	3.6	7.5	6.1	1.5	1	1	0	1	1	1	0	Aphid	transmission	protein
TMPIT	PF07851.13	gi|336252401|ref|YP_004595508.1|	-	1.8	7.8	4.1	2.4	7.3	4.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Laminin_II	PF06009.12	gi|336252401|ref|YP_004595508.1|	-	1.8	8.6	7.2	3.2	7.8	7.2	1.3	1	0	0	1	1	1	0	Laminin	Domain	II
FlxA	PF14282.6	gi|336252401|ref|YP_004595508.1|	-	2	8.4	5.9	0.82	9.7	2.8	1.8	1	1	1	2	2	2	0	FlxA-like	protein
IFP_35_N	PF07334.13	gi|336252401|ref|YP_004595508.1|	-	2.3	8.4	10.0	8.6	6.5	0.9	2.3	2	0	0	2	2	2	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
Seryl_tRNA_N	PF02403.22	gi|336252401|ref|YP_004595508.1|	-	2.4	8.5	13.1	9	6.6	13.1	1.8	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Cep57_MT_bd	PF06657.13	gi|336252401|ref|YP_004595508.1|	-	2.9	8.4	8.9	3.2	8.3	2.5	2.5	1	1	2	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
CCDC24	PF15669.5	gi|336252401|ref|YP_004595508.1|	-	3.2	7.6	10.9	3.5	7.5	1.4	2.1	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	24	family
OmpH	PF03938.14	gi|336252401|ref|YP_004595508.1|	-	3.5	7.9	10.8	11	6.4	10.8	1.7	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
ZapB	PF06005.12	gi|336252401|ref|YP_004595508.1|	-	4.1	7.9	18.2	3.4	8.2	10.5	2.4	1	1	1	2	2	2	0	Cell	division	protein	ZapB
BLOC1_2	PF10046.9	gi|336252401|ref|YP_004595508.1|	-	4.1	7.8	9.4	2.9	8.2	3.0	2.2	1	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Syntaxin_2	PF14523.6	gi|336252401|ref|YP_004595508.1|	-	4.6	7.7	8.1	6.8	7.1	6.4	2.2	2	1	0	2	2	1	0	Syntaxin-like	protein
COG2	PF06148.11	gi|336252401|ref|YP_004595508.1|	-	4.7	7.3	8.5	23	5.1	8.3	2.0	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Swi5	PF07061.11	gi|336252401|ref|YP_004595508.1|	-	5.6	7.1	9.3	2.2	8.4	3.6	2.6	3	0	0	3	3	2	0	Swi5
PDDEXK_1	PF12705.7	gi|336252402|ref|YP_004595509.1|	-	3.1e-13	50.2	0.0	1.4e-12	48.1	0.0	1.9	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Sel_put	PF04328.13	gi|336252402|ref|YP_004595509.1|	-	0.17	12.0	0.1	0.95	9.5	0.0	2.3	2	0	0	2	2	2	0	Selenoprotein,	putative
UvrD-helicase	PF00580.21	gi|336252403|ref|YP_004595510.1|	-	7.8e-52	176.7	0.1	2.3e-51	175.2	0.1	1.7	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|336252403|ref|YP_004595510.1|	-	5.6e-30	104.9	0.0	1.2e-18	67.6	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|336252403|ref|YP_004595510.1|	-	1.1e-27	97.1	0.0	9.2e-27	94.2	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
PDDEXK_1	PF12705.7	gi|336252403|ref|YP_004595510.1|	-	3.8e-10	40.1	0.8	4.3e-09	36.7	0.5	2.3	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|336252403|ref|YP_004595510.1|	-	4.5e-09	36.0	0.1	0.00085	19.1	0.0	2.9	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|336252403|ref|YP_004595510.1|	-	1.1e-05	25.2	0.0	7.7e-05	22.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|336252403|ref|YP_004595510.1|	-	0.00052	19.9	0.0	0.3	10.9	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|336252403|ref|YP_004595510.1|	-	0.0008	19.2	0.2	4.1	7.1	0.1	3.5	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_12	PF13087.6	gi|336252403|ref|YP_004595510.1|	-	0.0039	16.8	0.1	0.24	11.0	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
DUF2800	PF10926.8	gi|336252403|ref|YP_004595510.1|	-	0.005	16.2	0.0	0.0092	15.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
PhoH	PF02562.16	gi|336252403|ref|YP_004595510.1|	-	0.0058	16.1	0.1	3.2	7.2	0.0	2.6	2	1	0	2	2	2	2	PhoH-like	protein
HopW1-1	PF15457.6	gi|336252404|ref|YP_004595511.1|	-	0.00069	19.0	0.8	0.001	18.4	0.8	1.2	1	0	0	1	1	1	1	Type	III	T3SS	secreted	effector	HopW1-1/HopPmaA
TMF_TATA_bd	PF12325.8	gi|336252404|ref|YP_004595511.1|	-	0.00082	19.6	9.0	0.00082	19.6	9.0	2.6	2	1	1	3	3	3	1	TATA	element	modulatory	factor	1	TATA	binding
GAS	PF13851.6	gi|336252404|ref|YP_004595511.1|	-	0.0011	18.4	4.7	0.0011	18.4	4.7	1.8	2	0	0	2	2	1	1	Growth-arrest	specific	micro-tubule	binding
NOG1_N	PF17835.1	gi|336252404|ref|YP_004595511.1|	-	0.003	17.5	3.1	1.2	9.0	0.0	2.9	2	1	0	2	2	2	2	NOG1	N-terminal	helical	domain
SEN1_N	PF12726.7	gi|336252404|ref|YP_004595511.1|	-	0.0061	14.9	0.6	0.0079	14.5	0.6	1.1	1	0	0	1	1	1	1	SEN1	N	terminal
Golgin_A5	PF09787.9	gi|336252404|ref|YP_004595511.1|	-	0.0076	15.7	13.1	0.011	15.2	13.1	1.3	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
Tup_N	PF08581.10	gi|336252404|ref|YP_004595511.1|	-	0.013	15.8	5.7	0.013	15.8	5.7	2.6	1	1	1	2	2	2	0	Tup	N-terminal
DASH_Spc19	PF08287.11	gi|336252404|ref|YP_004595511.1|	-	0.04	13.8	6.5	0.083	12.8	6.5	1.6	1	0	0	1	1	1	0	Spc19
Nup188_C	PF18378.1	gi|336252404|ref|YP_004595511.1|	-	0.053	12.4	4.3	0.077	11.8	4.3	1.2	1	0	0	1	1	1	0	Nuclear	pore	protein	NUP188	C-terminal	domain
Spc7	PF08317.11	gi|336252404|ref|YP_004595511.1|	-	0.061	12.2	14.2	0.096	11.5	14.2	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
FIN1	PF17300.2	gi|336252404|ref|YP_004595511.1|	-	0.12	11.9	4.5	0.21	11.0	4.5	1.5	1	0	0	1	1	1	0	Filaments	in	between	nuclei	protein-1
Synaptobrevin	PF00957.21	gi|336252404|ref|YP_004595511.1|	-	0.14	12.0	6.9	0.081	12.7	3.6	2.2	1	1	1	2	2	2	0	Synaptobrevin
Herpes_UL25	PF01499.16	gi|336252404|ref|YP_004595511.1|	-	0.14	10.6	1.3	0.17	10.4	1.3	1.1	1	0	0	1	1	1	0	Herpesvirus	UL25	family
AcylCoA_dehyd_C	PF12186.8	gi|336252404|ref|YP_004595511.1|	-	0.3	11.2	4.7	0.88	9.7	0.4	3.0	2	1	0	3	3	3	0	Acyl-CoA	dehydrogenase	C	terminal
LMBR1	PF04791.16	gi|336252404|ref|YP_004595511.1|	-	0.36	9.7	5.1	0.44	9.4	5.1	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
GrpE	PF01025.19	gi|336252404|ref|YP_004595511.1|	-	0.52	10.0	11.9	0.082	12.6	7.9	1.6	2	0	0	2	2	1	0	GrpE
DUF4047	PF13256.6	gi|336252404|ref|YP_004595511.1|	-	0.62	10.3	8.1	0.33	11.1	5.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4047)
Uds1	PF15456.6	gi|336252404|ref|YP_004595511.1|	-	0.63	10.2	11.5	0.3	11.2	3.6	2.9	2	1	1	3	3	3	0	Up-regulated	During	Septation
Atg14	PF10186.9	gi|336252404|ref|YP_004595511.1|	-	0.64	9.0	8.1	0.88	8.6	8.1	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Syntaxin_2	PF14523.6	gi|336252404|ref|YP_004595511.1|	-	0.71	10.3	5.1	1.4	9.3	3.8	2.2	1	1	0	1	1	1	0	Syntaxin-like	protein
TMPIT	PF07851.13	gi|336252404|ref|YP_004595511.1|	-	0.77	8.9	4.4	1.1	8.4	4.4	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
COG2	PF06148.11	gi|336252404|ref|YP_004595511.1|	-	0.89	9.6	11.9	0.27	11.3	7.0	2.6	2	1	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
TrmO_C	PF18389.1	gi|336252404|ref|YP_004595511.1|	-	1	9.5	6.2	12	6.1	0.2	3.2	3	0	0	3	3	3	0	TrmO	C-terminal	domain
DUF1664	PF07889.12	gi|336252404|ref|YP_004595511.1|	-	1.1	9.4	6.4	0.8	9.7	3.2	2.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Occludin_ELL	PF07303.13	gi|336252404|ref|YP_004595511.1|	-	1.1	10.1	6.7	2.1	9.1	3.3	2.9	1	1	2	3	3	3	0	Occludin	homology	domain
Ead_Ea22	PF13935.6	gi|336252404|ref|YP_004595511.1|	-	1.3	9.7	14.8	0.34	11.6	8.7	2.5	2	1	0	2	2	2	0	Ead/Ea22-like	protein
DUF932	PF06067.11	gi|336252404|ref|YP_004595511.1|	-	1.8	8.2	8.2	3.5	7.3	5.1	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF932)
APG6_N	PF17675.1	gi|336252404|ref|YP_004595511.1|	-	2.3	8.7	22.9	0.092	13.3	16.0	2.0	2	1	1	3	3	2	0	Apg6	coiled-coil	region
Iron_permease	PF04120.12	gi|336252404|ref|YP_004595511.1|	-	2.6	7.8	4.5	4	7.2	3.6	1.8	1	1	0	1	1	1	0	Low	affinity	iron	permease
Fib_alpha	PF08702.10	gi|336252404|ref|YP_004595511.1|	-	2.7	8.2	6.4	2.7	8.2	4.9	1.8	2	0	0	2	2	1	0	Fibrinogen	alpha/beta	chain	family
Nup54	PF13874.6	gi|336252404|ref|YP_004595511.1|	-	3.1	7.9	10.8	1.4	9.0	7.0	2.2	2	1	1	3	3	3	0	Nucleoporin	complex	subunit	54
DUF4407	PF14362.6	gi|336252404|ref|YP_004595511.1|	-	3.7	6.8	6.8	5.5	6.3	6.6	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
ZapA	PF05164.13	gi|336252404|ref|YP_004595511.1|	-	4.3	7.8	16.5	7.1	7.1	0.3	4.0	3	1	1	4	4	4	0	Cell	division	protein	ZapA
YtxH	PF12732.7	gi|336252404|ref|YP_004595511.1|	-	5	7.7	5.0	33	5.1	2.5	3.3	2	1	0	2	2	2	0	YtxH-like	protein
DUF3782	PF12644.7	gi|336252404|ref|YP_004595511.1|	-	6.6	7.0	10.3	14	6.0	7.4	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3782)
DivIC	PF04977.15	gi|336252404|ref|YP_004595511.1|	-	8.4	6.3	10.6	44	3.9	10.6	2.3	1	1	0	1	1	1	0	Septum	formation	initiator
FapA	PF03961.13	gi|336252404|ref|YP_004595511.1|	-	8.6	4.8	8.7	15	4.1	8.7	1.4	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
zinc_ribbon_9	PF14369.6	gi|336252407|ref|YP_004595514.1|	-	0.095	13.0	0.4	19	5.6	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon
T2SS-T3SS_pil_N	PF13629.6	gi|336252407|ref|YP_004595514.1|	-	0.14	11.9	0.0	0.43	10.3	0.0	1.8	2	0	0	2	2	2	0	Pilus	formation	protein	N	terminal	region
zf-Di19	PF05605.12	gi|336252407|ref|YP_004595514.1|	-	2	8.8	3.8	37	4.7	3.9	2.3	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF4268	PF14088.6	gi|336252408|ref|YP_004595515.1|	-	0.088	12.7	0.0	0.3	11.0	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4268)
Phage_integrase	PF00589.22	gi|336252409|ref|YP_004595516.1|	-	5.5e-16	58.8	0.0	1.7e-15	57.2	0.0	1.7	2	0	0	2	2	2	1	Phage	integrase	family
DZR	PF12773.7	gi|336252409|ref|YP_004595516.1|	-	0.00025	21.0	8.4	0.00055	19.9	8.4	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
UPF0236	PF06782.11	gi|336252409|ref|YP_004595516.1|	-	0.0042	15.8	0.0	0.0089	14.7	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0236)
PqqD	PF05402.12	gi|336252409|ref|YP_004595516.1|	-	0.056	13.8	0.0	0.16	12.3	0.0	1.8	1	0	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
USP8_interact	PF08941.10	gi|336252409|ref|YP_004595516.1|	-	0.094	12.5	0.2	0.2	11.4	0.1	1.6	1	1	0	1	1	1	0	USP8	interacting
DUF2614	PF11023.8	gi|336252409|ref|YP_004595516.1|	-	0.49	10.5	1.3	0.81	9.8	1.3	1.2	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
C1_1	PF00130.22	gi|336252409|ref|YP_004595516.1|	-	1.2	9.0	9.6	0.65	9.9	7.2	1.8	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-ribbon_3	PF13248.6	gi|336252409|ref|YP_004595516.1|	-	2.5	7.6	5.8	20	4.7	2.8	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|336252409|ref|YP_004595516.1|	-	9.2	6.2	10.7	6.1	6.8	5.6	2.2	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
AAA_22	PF13401.6	gi|336252410|ref|YP_004595517.1|	-	1.5e-05	25.2	0.0	8.1e-05	22.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
KAP_NTPase	PF07693.14	gi|336252410|ref|YP_004595517.1|	-	0.0012	18.1	0.1	0.07	12.4	0.2	2.6	1	1	2	3	3	3	1	KAP	family	P-loop	domain
AAA_16	PF13191.6	gi|336252410|ref|YP_004595517.1|	-	0.011	16.1	1.7	0.011	16.1	1.7	2.0	2	1	0	2	2	2	0	AAA	ATPase	domain
PTPlike_phytase	PF14566.6	gi|336252410|ref|YP_004595517.1|	-	0.1	12.7	0.2	2.9	8.0	0.0	2.3	1	1	1	2	2	2	0	Inositol	hexakisphosphate
ThiS	PF02597.20	gi|336252411|ref|YP_004595518.1|	-	0.0018	18.9	0.3	0.012	16.3	0.1	2.0	2	0	0	2	2	2	1	ThiS	family
DUF3600	PF12207.8	gi|336252411|ref|YP_004595518.1|	-	0.0095	15.9	0.3	0.011	15.7	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3600)
DUF3235	PF11574.8	gi|336252411|ref|YP_004595518.1|	-	0.036	14.9	0.2	0.052	14.4	0.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3235)
PPP1R35_C	PF15503.6	gi|336252411|ref|YP_004595518.1|	-	0.066	13.0	0.1	0.084	12.7	0.1	1.1	1	0	0	1	1	1	0	Protein	phosphatase	1	regulatory	subunit	35	C-terminus
Metallophos_2	PF12850.7	gi|336252412|ref|YP_004595519.1|	-	7.9e-12	45.7	0.1	1.3e-11	45.0	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336252412|ref|YP_004595519.1|	-	9.5e-07	29.5	3.6	1.4e-05	25.7	3.6	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|336252412|ref|YP_004595519.1|	-	0.084	12.2	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
DUF3458_C	PF17432.2	gi|336252414|ref|YP_004595521.1|	-	0.043	13.2	0.1	0.045	13.1	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3458_C)	ARM	repeats
ATP-synt_F	PF01990.17	gi|336252416|ref|YP_004595523.1|	-	0.016	15.5	0.0	0.02	15.2	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	(F/14-kDa)	subunit
PUA	PF01472.20	gi|336252416|ref|YP_004595523.1|	-	0.021	14.8	0.1	0.032	14.2	0.1	1.2	1	0	0	1	1	1	0	PUA	domain
TGS	PF02824.21	gi|336252416|ref|YP_004595523.1|	-	0.041	13.9	0.0	0.072	13.2	0.0	1.4	1	0	0	1	1	1	0	TGS	domain
DUF4180	PF13788.6	gi|336252416|ref|YP_004595523.1|	-	0.12	12.3	0.1	0.16	11.9	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4180)
SecY	PF00344.20	gi|336252417|ref|YP_004595524.1|	-	3.7e-69	233.3	20.3	4.4e-69	233.1	20.3	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|336252417|ref|YP_004595524.1|	-	4.4e-12	45.6	2.1	1.7e-11	43.7	2.1	2.2	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Ribosomal_L27A	PF00828.19	gi|336252418|ref|YP_004595525.1|	-	9.5e-17	61.9	0.3	9.5e-17	61.9	0.3	1.5	2	0	0	2	2	2	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L30	PF00327.20	gi|336252419|ref|YP_004595526.1|	-	1.2e-10	41.1	0.0	2.1e-10	40.3	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_S5	PF00333.20	gi|336252420|ref|YP_004595527.1|	-	1.6e-23	82.4	0.5	4.6e-23	81.0	0.1	1.9	2	0	0	2	2	2	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.15	gi|336252420|ref|YP_004595527.1|	-	3.5e-22	77.6	0.2	6.3e-22	76.8	0.0	1.5	2	0	0	2	2	2	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L5e	PF17144.4	gi|336252421|ref|YP_004595528.1|	-	4.3e-31	108.1	0.0	1.4e-19	70.7	0.0	2.2	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|336252421|ref|YP_004595528.1|	-	1.4e-09	38.3	0.0	2.2e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_L19e	PF01280.20	gi|336252422|ref|YP_004595529.1|	-	2.9e-57	192.8	6.3	3.2e-57	192.6	6.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
SHOCT	PF09851.9	gi|336252422|ref|YP_004595529.1|	-	0.0013	18.4	1.1	0.0013	18.4	1.1	2.1	2	0	0	2	2	2	1	Short	C-terminal	domain
AbiEi_4	PF13338.6	gi|336252422|ref|YP_004595529.1|	-	0.03	14.5	0.9	2.4	8.4	0.3	2.4	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
Lant_dehydr_C	PF14028.6	gi|336252422|ref|YP_004595529.1|	-	0.042	13.4	0.4	0.047	13.2	0.4	1.1	1	0	0	1	1	1	0	Lantibiotic	biosynthesis	dehydratase	C-term
CDC45	PF02724.14	gi|336252422|ref|YP_004595529.1|	-	2.9	6.1	5.5	3.1	6.0	5.5	1.0	1	0	0	1	1	1	0	CDC45-like	protein
Ribosomal_L32e	PF01655.18	gi|336252423|ref|YP_004595530.1|	-	4e-32	110.8	0.2	8.2e-32	109.9	0.2	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L32
HHH_5	PF14520.6	gi|336252423|ref|YP_004595530.1|	-	4.5e-13	49.6	4.4	5.5e-13	49.3	0.9	2.8	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|336252423|ref|YP_004595530.1|	-	1.1e-06	28.3	0.0	7e-06	25.8	0.0	2.2	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|336252423|ref|YP_004595530.1|	-	1.4e-06	27.8	1.8	0.061	13.2	0.0	3.2	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|336252423|ref|YP_004595530.1|	-	1.2e-05	25.2	0.6	2.9e-05	24.1	0.6	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|336252423|ref|YP_004595530.1|	-	0.00034	20.8	0.0	0.0019	18.4	0.0	2.2	2	0	0	2	2	2	1	Pathogenicity	locus
HHH_8	PF14716.6	gi|336252423|ref|YP_004595530.1|	-	0.044	14.1	2.2	1	9.7	0.2	2.9	2	1	1	3	3	3	0	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|336252423|ref|YP_004595530.1|	-	0.054	13.8	0.1	5.7	7.3	0.1	2.7	1	1	1	2	2	2	0	Helix-hairpin-helix	motif
LytR_C	PF13399.6	gi|336252423|ref|YP_004595530.1|	-	0.13	13.3	2.3	0.96	10.5	0.4	2.8	2	1	1	3	3	3	0	LytR	cell	envelope-related	transcriptional	attenuator
Ribosomal_L6	PF00347.23	gi|336252424|ref|YP_004595531.1|	-	1.5e-29	102.4	1.0	2.8e-14	53.5	0.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
HSP20	PF00011.21	gi|336252424|ref|YP_004595531.1|	-	0.51	10.5	4.2	2	8.6	0.2	3.1	3	1	1	4	4	4	0	Hsp20/alpha	crystallin	family
Ribosomal_S8	PF00410.19	gi|336252425|ref|YP_004595532.1|	-	7.3e-24	84.1	0.0	9.4e-24	83.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.21	gi|336252426|ref|YP_004595533.1|	-	1.7e-11	43.7	2.2	2e-11	43.5	2.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.6	gi|336252426|ref|YP_004595533.1|	-	0.0067	16.3	0.4	0.0085	16.0	0.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
Ribosomal_L5_C	PF00673.21	gi|336252427|ref|YP_004595534.1|	-	3.4e-21	75.2	0.0	1.1e-20	73.6	0.0	1.9	1	1	1	2	2	2	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|336252427|ref|YP_004595534.1|	-	1.7e-16	60.2	0.1	2.7e-16	59.6	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L5
Hva1_TUDOR	PF11160.8	gi|336252427|ref|YP_004595534.1|	-	0.094	12.9	0.5	0.21	11.8	0.5	1.6	1	0	0	1	1	1	0	Hypervirulence	associated	proteins	TUDOR	domain
Ribosomal_S4e	PF00900.20	gi|336252428|ref|YP_004595535.1|	-	1.8e-22	79.0	0.0	3.6e-22	78.0	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|336252428|ref|YP_004595535.1|	-	5.5e-11	42.4	0.2	7.9e-11	41.9	0.2	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|336252428|ref|YP_004595535.1|	-	2.6e-05	23.9	0.0	4.5e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	S4	domain
S4_2	PF13275.6	gi|336252428|ref|YP_004595535.1|	-	0.027	14.3	0.0	0.079	12.8	0.0	1.8	2	0	0	2	2	2	0	S4	domain
KOW	PF00467.29	gi|336252428|ref|YP_004595535.1|	-	0.055	13.4	0.5	0.16	11.9	0.5	1.9	1	0	0	1	1	1	0	KOW	motif
Ribosomal_L26	PF16906.5	gi|336252429|ref|YP_004595536.1|	-	2.5e-23	82.3	0.0	3.2e-23	82.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|336252429|ref|YP_004595536.1|	-	2.8e-06	27.1	1.9	5.8e-06	26.1	1.9	1.6	1	0	0	1	1	1	1	KOW	motif
Ribosomal_L14	PF00238.19	gi|336252430|ref|YP_004595537.1|	-	5.3e-37	126.6	0.4	6.4e-37	126.4	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.20	gi|336252431|ref|YP_004595538.1|	-	2.2e-25	88.6	1.9	2.8e-25	88.2	1.9	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|336252431|ref|YP_004595538.1|	-	0.00011	22.5	0.0	0.00019	21.7	0.0	1.4	1	0	0	1	1	1	1	Ribosomal_S17	N-terminal
UPF0086	PF01868.16	gi|336252432|ref|YP_004595539.1|	-	8.8e-28	96.1	0.0	1e-27	95.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.23	gi|336252433|ref|YP_004595540.1|	-	4.8e-19	68.1	0.3	6.1e-19	67.7	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
Med9	PF07544.13	gi|336252433|ref|YP_004595540.1|	-	0.028	14.5	0.2	0.32	11.1	0.1	2.0	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
FUSC-like	PF12805.7	gi|336252433|ref|YP_004595540.1|	-	0.069	12.2	0.0	0.079	12.0	0.0	1.0	1	0	0	1	1	1	0	FUSC-like	inner	membrane	protein	yccS
Ribosomal_S3_C	PF00189.20	gi|336252434|ref|YP_004595541.1|	-	3.5e-22	78.7	0.7	1.4e-21	76.8	0.6	2.1	3	0	0	3	3	3	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|336252434|ref|YP_004595541.1|	-	6e-17	61.2	0.1	1.4e-16	60.0	0.1	1.7	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|336252434|ref|YP_004595541.1|	-	0.034	14.0	1.3	0.092	12.6	0.2	2.4	3	0	0	3	3	3	0	KH	domain
KH_5	PF13184.6	gi|336252434|ref|YP_004595541.1|	-	0.054	13.6	0.0	0.66	10.1	0.0	2.6	2	0	0	2	2	2	0	NusA-like	KH	domain
Ribosomal_L22	PF00237.19	gi|336252435|ref|YP_004595542.1|	-	5e-20	71.7	0.0	6e-20	71.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|336252436|ref|YP_004595543.1|	-	4.4e-32	109.8	0.0	6e-32	109.4	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Siah-Interact_N	PF09032.11	gi|336252436|ref|YP_004595543.1|	-	0.012	15.9	1.6	0.017	15.4	1.6	1.3	1	0	0	1	1	1	0	Siah	interacting	protein,	N	terminal
Citrate_synt	PF00285.21	gi|336252436|ref|YP_004595543.1|	-	0.083	11.9	0.1	0.091	11.8	0.1	1.1	1	0	0	1	1	1	0	Citrate	synthase,	C-terminal	domain
Ribosomal_L2_C	PF03947.18	gi|336252437|ref|YP_004595544.1|	-	1.9e-45	154.1	2.7	3e-45	153.5	2.7	1.3	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|336252437|ref|YP_004595544.1|	-	1.2e-18	66.9	0.0	4.9e-18	64.8	0.0	2.1	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.20	gi|336252438|ref|YP_004595545.1|	-	1.4e-16	60.6	2.0	4.8e-16	58.9	2.0	1.7	1	1	0	1	1	1	1	Ribosomal	protein	L23
CE2_N	PF17996.1	gi|336252438|ref|YP_004595545.1|	-	0.063	13.3	0.1	0.075	13.0	0.1	1.2	1	0	0	1	1	1	0	Carbohydrate	esterase	2	N-terminal
SSrecog	PF03531.14	gi|336252438|ref|YP_004595545.1|	-	0.12	12.3	0.9	0.21	11.5	0.9	1.5	1	1	0	1	1	1	0	Structure-specific	recognition	protein	(SSRP1)
Ribosomal_L4	PF00573.22	gi|336252439|ref|YP_004595546.1|	-	5.4e-46	156.7	0.1	6.2e-46	156.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.22	gi|336252440|ref|YP_004595547.1|	-	3.1e-108	362.1	0.1	1.4e-107	359.9	0.1	1.8	1	1	0	1	1	1	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.17	gi|336252441|ref|YP_004595548.1|	-	6.8e-71	239.1	0.0	7.7e-71	238.9	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
DUF4112	PF13430.6	gi|336252442|ref|YP_004595549.1|	-	5.5e-30	103.7	0.4	6.4e-30	103.5	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4112)
Phage_holin_2_4	PF16082.5	gi|336252442|ref|YP_004595549.1|	-	0.021	14.5	0.4	0.03	14.1	0.4	1.3	1	0	0	1	1	1	0	Bacteriophage	holin	family,	superfamily	II-like
HalOD1	PF18545.1	gi|336252443|ref|YP_004595550.1|	-	9.1e-23	80.3	0.4	1.2e-22	79.9	0.4	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Thiamine_BP	PF01910.17	gi|336252444|ref|YP_004595551.1|	-	4.5e-24	84.2	0.6	5.2e-24	84.0	0.6	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
HalOD1	PF18545.1	gi|336252444|ref|YP_004595551.1|	-	0.017	15.4	1.6	0.028	14.7	0.8	1.8	1	1	1	2	2	2	0	Halobacterial	output	domain	1
HMA	PF00403.26	gi|336252445|ref|YP_004595552.1|	-	3.4e-13	49.8	0.4	3.7e-13	49.7	0.4	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
MCH	PF02289.16	gi|336252446|ref|YP_004595553.1|	-	9.6e-116	386.4	0.0	1.1e-115	386.3	0.0	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
HAD_2	PF13419.6	gi|336252447|ref|YP_004595554.1|	-	5.9e-21	75.3	0.0	1.3e-20	74.2	0.0	1.6	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252447|ref|YP_004595554.1|	-	3.2e-15	57.0	0.3	1.7e-13	51.3	0.1	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252447|ref|YP_004595554.1|	-	1.9e-10	40.7	0.0	4.2e-10	39.6	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|336252447|ref|YP_004595554.1|	-	0.00014	22.3	0.3	0.00029	21.3	0.3	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
GTP_EFTU	PF00009.27	gi|336252448|ref|YP_004595555.1|	-	2.3e-35	121.9	0.0	3.4e-35	121.4	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|336252448|ref|YP_004595555.1|	-	1.2e-11	44.9	0.4	3.6e-11	43.3	0.4	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|336252448|ref|YP_004595555.1|	-	6.4e-07	29.7	0.0	5.4e-06	26.7	0.0	2.4	1	1	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
RsgA_GTPase	PF03193.16	gi|336252448|ref|YP_004595555.1|	-	0.012	15.6	0.1	0.38	10.6	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|336252448|ref|YP_004595555.1|	-	0.029	14.5	0.0	0.11	12.5	0.0	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Polysacc_deac_1	PF01522.21	gi|336252448|ref|YP_004595555.1|	-	0.052	13.4	0.0	0.087	12.7	0.0	1.3	1	0	0	1	1	1	0	Polysaccharide	deacetylase
ATP_bind_1	PF03029.17	gi|336252448|ref|YP_004595555.1|	-	0.055	13.2	0.3	0.5	10.1	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
DUF2120	PF09893.9	gi|336252448|ref|YP_004595555.1|	-	0.14	12.3	0.2	0.26	11.4	0.2	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
zf-HIT	PF04438.16	gi|336252449|ref|YP_004595556.1|	-	0.016	15.0	1.7	0.016	15.0	1.7	1.9	2	0	0	2	2	2	0	HIT	zinc	finger
zf-B_box	PF00643.24	gi|336252449|ref|YP_004595556.1|	-	0.023	14.9	12.0	0.026	14.7	5.9	2.1	1	1	1	2	2	2	0	B-box	zinc	finger
DZR	PF12773.7	gi|336252449|ref|YP_004595556.1|	-	0.49	10.5	12.5	2.9	8.0	1.2	2.1	1	1	1	2	2	2	0	Double	zinc	ribbon
Prok-RING_2	PF14445.6	gi|336252449|ref|YP_004595556.1|	-	0.65	10.2	7.1	0.92	9.7	7.1	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	2
DNA_RNApol_7kD	PF03604.13	gi|336252449|ref|YP_004595556.1|	-	0.88	9.3	7.6	2.1	8.1	0.1	2.6	2	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
PolC_DP2	PF03833.13	gi|336252449|ref|YP_004595556.1|	-	0.89	7.3	4.1	0.89	7.3	4.1	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
OMPdecase	PF00215.24	gi|336252450|ref|YP_004595557.1|	-	7.2e-33	114.1	0.0	8.1e-33	113.9	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
DUF2859	PF11072.8	gi|336252450|ref|YP_004595557.1|	-	0.14	11.9	0.0	0.31	10.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2859)
zf-ribbon_3	PF13248.6	gi|336252451|ref|YP_004595558.1|	-	0.0002	20.6	0.9	0.00035	19.9	0.9	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336252451|ref|YP_004595558.1|	-	0.00084	19.3	2.1	0.0015	18.5	2.1	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|336252451|ref|YP_004595558.1|	-	0.001	19.0	1.6	0.0015	18.5	1.6	1.2	1	0	0	1	1	1	1	zinc-ribbons
NOB1_Zn_bind	PF08772.11	gi|336252451|ref|YP_004595558.1|	-	0.0025	17.9	2.5	0.0041	17.3	2.5	1.3	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C3HC4_3	PF13920.6	gi|336252451|ref|YP_004595558.1|	-	0.012	15.5	0.3	0.022	14.6	0.3	1.4	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
RecR	PF02132.15	gi|336252451|ref|YP_004595558.1|	-	0.034	13.7	0.7	0.075	12.6	0.7	1.5	1	0	0	1	1	1	0	RecR	protein
HypA	PF01155.19	gi|336252451|ref|YP_004595558.1|	-	0.039	14.0	0.6	0.049	13.6	0.6	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Auto_anti-p27	PF06677.12	gi|336252451|ref|YP_004595558.1|	-	0.05	13.8	1.4	0.074	13.2	1.4	1.2	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn-ribbon_8	PF09723.10	gi|336252451|ref|YP_004595558.1|	-	0.17	12.1	4.2	0.55	10.4	4.2	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|336252451|ref|YP_004595558.1|	-	0.24	11.4	1.9	3.9	7.5	0.1	2.2	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.11	gi|336252451|ref|YP_004595558.1|	-	0.3	10.8	3.4	4.3	7.1	0.2	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|336252451|ref|YP_004595558.1|	-	0.93	9.5	4.4	16	5.5	0.2	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
RNA_POL_M_15KD	PF02150.16	gi|336252451|ref|YP_004595558.1|	-	0.97	9.4	6.4	10	6.1	0.0	2.8	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
UPF0547	PF10571.9	gi|336252451|ref|YP_004595558.1|	-	1.3	9.2	5.3	15	5.8	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|336252451|ref|YP_004595558.1|	-	1.6	8.5	5.1	7.6	6.4	4.6	2.1	1	1	2	3	3	3	0	zinc-ribbon	domain
HypA	PF01155.19	gi|336252452|ref|YP_004595559.1|	-	0.0026	17.8	0.9	0.0029	17.6	0.9	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|336252452|ref|YP_004595559.1|	-	0.0043	16.9	1.4	0.92	9.4	0.3	2.4	2	1	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_15	PF17032.5	gi|336252452|ref|YP_004595559.1|	-	0.016	16.0	1.6	0.024	15.4	1.6	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
Rubredoxin_2	PF18073.1	gi|336252452|ref|YP_004595559.1|	-	0.059	13.1	5.3	0.1	12.3	5.3	1.5	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
Desulfoferrod_N	PF06397.12	gi|336252452|ref|YP_004595559.1|	-	0.096	12.3	0.9	2.7	7.7	0.2	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zf-ribbon_3	PF13248.6	gi|336252452|ref|YP_004595559.1|	-	0.11	12.0	5.1	2.6	7.6	0.7	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|336252452|ref|YP_004595559.1|	-	0.12	12.5	0.6	0.12	12.5	0.6	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|336252452|ref|YP_004595559.1|	-	0.54	10.4	10.7	0.76	9.9	9.3	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_4	PF13894.6	gi|336252452|ref|YP_004595559.1|	-	0.91	10.5	5.9	2.4	9.2	0.9	2.2	1	1	1	2	2	2	0	C2H2-type	zinc	finger
zf-RRN7	PF11781.8	gi|336252452|ref|YP_004595559.1|	-	8.9	6.1	11.7	0.78	9.5	0.7	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
TrkA_C	PF02080.21	gi|336252453|ref|YP_004595560.1|	-	4.2e-14	52.1	0.9	9.7e-14	51.0	0.9	1.6	1	0	0	1	1	1	1	TrkA-C	domain
HTH_AsnC-type	PF13404.6	gi|336252453|ref|YP_004595560.1|	-	4e-10	39.4	1.4	7.3e-10	38.5	0.2	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252453|ref|YP_004595560.1|	-	4.4e-10	38.9	0.1	4.2e-09	35.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336252453|ref|YP_004595560.1|	-	2.8e-05	24.1	0.0	6.4e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336252453|ref|YP_004595560.1|	-	3e-05	23.9	0.0	7.3e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|336252453|ref|YP_004595560.1|	-	0.00028	20.7	0.1	0.00098	19.0	0.1	1.9	1	1	1	2	2	2	1	MarR	family
HTH_DeoR	PF08220.12	gi|336252453|ref|YP_004595560.1|	-	0.00048	19.8	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252453|ref|YP_004595560.1|	-	0.0019	18.0	0.0	0.0033	17.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|336252453|ref|YP_004595560.1|	-	0.0055	16.8	0.1	0.011	15.8	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|336252453|ref|YP_004595560.1|	-	0.0072	16.2	0.0	0.017	15.0	0.0	1.6	1	0	0	1	1	1	1	MarR	family
PTase_Orf2	PF11468.8	gi|336252453|ref|YP_004595560.1|	-	0.02	14.3	0.0	0.026	13.9	0.0	1.1	1	0	0	1	1	1	0	Aromatic	prenyltransferase	Orf2
Fe_dep_repress	PF01325.19	gi|336252453|ref|YP_004595560.1|	-	0.022	14.9	0.0	0.042	14.1	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|336252453|ref|YP_004595560.1|	-	0.026	14.9	0.0	0.055	13.8	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_CodY	PF08222.11	gi|336252453|ref|YP_004595560.1|	-	0.062	12.9	0.1	0.13	11.8	0.1	1.4	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_23	PF13384.6	gi|336252453|ref|YP_004595560.1|	-	0.099	12.5	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_30	PF13556.6	gi|336252453|ref|YP_004595560.1|	-	0.19	11.5	1.2	0.25	11.2	0.1	1.7	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
TrkH	PF02386.16	gi|336252454|ref|YP_004595561.1|	-	2.7e-60	204.3	14.6	2.4e-32	112.1	1.6	2.0	2	0	0	2	2	2	2	Cation	transport	protein
Form-deh_trans	PF09163.11	gi|336252454|ref|YP_004595561.1|	-	0.03	14.1	0.0	0.03	14.1	0.0	3.5	3	0	0	3	3	3	0	Formate	dehydrogenase	N,	transmembrane
DUF575	PF04746.12	gi|336252454|ref|YP_004595561.1|	-	0.11	12.8	0.2	0.32	11.3	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF575)
TrkA_N	PF02254.18	gi|336252455|ref|YP_004595562.1|	-	1.6e-49	167.0	8.0	2.7e-24	85.6	1.2	2.7	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|336252455|ref|YP_004595562.1|	-	3e-27	94.3	13.1	1e-14	54.1	0.1	3.6	4	0	0	4	4	3	2	TrkA-C	domain
Shikimate_DH	PF01488.20	gi|336252455|ref|YP_004595562.1|	-	2.5e-12	47.0	0.1	1.7e-05	24.9	0.1	2.6	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|336252455|ref|YP_004595562.1|	-	6.6e-11	42.6	6.4	5.8e-06	26.7	1.1	2.9	2	1	1	3	3	3	2	Putative	NAD(P)-binding
Sacchrp_dh_NADP	PF03435.18	gi|336252455|ref|YP_004595562.1|	-	1.7e-07	31.6	3.6	0.00042	20.6	0.9	2.6	2	0	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|336252455|ref|YP_004595562.1|	-	2.8e-07	31.0	1.2	0.013	16.1	0.0	3.6	3	1	1	4	4	4	2	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.14	gi|336252455|ref|YP_004595562.1|	-	2.9e-07	30.0	0.4	9.3e-07	28.4	0.4	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|336252455|ref|YP_004595562.1|	-	7.8e-06	25.3	3.6	0.012	15.0	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|336252455|ref|YP_004595562.1|	-	2.1e-05	24.0	0.0	0.049	12.9	0.0	2.5	2	0	0	2	2	2	2	FAD	binding	domain
3HCDH_N	PF02737.18	gi|336252455|ref|YP_004595562.1|	-	5.5e-05	23.1	0.1	0.14	12.0	0.1	2.5	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|336252455|ref|YP_004595562.1|	-	9.5e-05	22.1	0.1	0.0017	18.0	0.0	2.6	2	1	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Castor_Poll_mid	PF06241.12	gi|336252455|ref|YP_004595562.1|	-	0.00018	21.4	0.0	0.027	14.4	0.0	2.5	2	0	0	2	2	2	1	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
NAD_binding_2	PF03446.15	gi|336252455|ref|YP_004595562.1|	-	0.00082	19.6	0.0	1	9.5	0.0	2.9	2	0	0	2	2	2	2	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_3	PF13738.6	gi|336252455|ref|YP_004595562.1|	-	0.00088	18.6	1.2	0.83	8.8	0.0	3.1	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336252455|ref|YP_004595562.1|	-	0.0011	19.5	4.3	0.15	12.6	0.0	3.7	4	0	0	4	4	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
adh_short	PF00106.25	gi|336252455|ref|YP_004595562.1|	-	0.0017	17.8	0.5	0.047	13.1	0.0	2.4	2	0	0	2	2	2	1	short	chain	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|336252455|ref|YP_004595562.1|	-	0.0021	17.6	2.0	0.17	11.4	0.3	2.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|336252455|ref|YP_004595562.1|	-	0.0029	18.4	0.4	1.2	10.0	0.1	2.7	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ADH_zinc_N	PF00107.26	gi|336252455|ref|YP_004595562.1|	-	0.0051	16.8	2.4	0.029	14.3	0.1	3.1	4	1	0	4	4	3	1	Zinc-binding	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|336252455|ref|YP_004595562.1|	-	0.0068	16.8	0.5	2.3	8.7	0.1	2.8	2	1	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336252455|ref|YP_004595562.1|	-	0.0092	15.6	1.1	0.041	13.5	0.1	2.3	2	1	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|336252455|ref|YP_004595562.1|	-	0.017	14.5	0.0	2.8	7.3	0.0	2.5	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336252455|ref|YP_004595562.1|	-	0.058	13.4	0.0	0.64	10.0	0.0	2.3	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Toprim	PF01751.22	gi|336252455|ref|YP_004595562.1|	-	0.12	12.7	0.9	1.6	9.0	0.1	2.6	2	0	0	2	2	2	0	Toprim	domain
LTD	PF00932.19	gi|336252455|ref|YP_004595562.1|	-	0.18	12.1	0.3	97	3.4	0.0	3.3	3	0	0	3	3	3	0	Lamin	Tail	Domain
DAO	PF01266.24	gi|336252455|ref|YP_004595562.1|	-	0.24	11.0	5.4	0.19	11.3	0.7	2.7	2	1	1	3	3	3	0	FAD	dependent	oxidoreductase
ThiF	PF00899.21	gi|336252455|ref|YP_004595562.1|	-	0.74	9.1	7.8	2.6	7.4	0.5	3.6	2	2	2	4	4	4	0	ThiF	family
adh_short_C2	PF13561.6	gi|336252455|ref|YP_004595562.1|	-	1	8.8	5.5	0.18	11.3	0.1	2.4	3	0	0	3	3	3	0	Enoyl-(Acyl	carrier	protein)	reductase
Rossmann-like	PF10727.9	gi|336252455|ref|YP_004595562.1|	-	5.2	6.9	9.7	1.7	8.5	1.3	3.7	3	2	0	3	3	3	0	Rossmann-like	domain
TrkH	PF02386.16	gi|336252456|ref|YP_004595563.1|	-	6.7e-68	229.4	7.9	2.6e-66	224.1	7.9	2.0	1	1	0	1	1	1	1	Cation	transport	protein
Glyoxalase	PF00903.25	gi|336252457|ref|YP_004595564.1|	-	5e-13	49.4	0.1	6.2e-13	49.1	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|336252457|ref|YP_004595564.1|	-	2.7e-10	40.5	0.1	3.3e-10	40.2	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.7	gi|336252457|ref|YP_004595564.1|	-	6.2e-07	29.4	0.0	2.2e-05	24.4	0.0	2.1	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|336252457|ref|YP_004595564.1|	-	0.00053	20.1	0.2	0.0012	19.0	0.2	1.6	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|336252457|ref|YP_004595564.1|	-	0.0021	18.8	0.5	0.0046	17.7	0.5	1.6	1	1	0	1	1	1	1	Glyoxalase-like	domain
MGS	PF02142.22	gi|336252458|ref|YP_004595565.1|	-	7.4e-14	51.7	0.0	8.8e-14	51.5	0.0	1.1	1	0	0	1	1	1	1	MGS-like	domain
TrkA_C	PF02080.21	gi|336252459|ref|YP_004595566.1|	-	8.2e-18	64.0	0.3	2.8e-17	62.3	0.0	1.9	2	1	0	2	2	2	1	TrkA-C	domain
Castor_Poll_mid	PF06241.12	gi|336252459|ref|YP_004595566.1|	-	0.0031	17.5	0.0	0.1	12.6	0.0	2.2	1	1	1	2	2	2	1	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
ArsA_HSP20	PF17886.1	gi|336252459|ref|YP_004595566.1|	-	0.1	12.2	0.1	1.2	8.7	0.0	2.3	2	0	0	2	2	2	0	HSP20-like	domain	found	in	ArsA
Na_H_Exchanger	PF00999.21	gi|336252460|ref|YP_004595567.1|	-	9.2e-48	162.9	41.9	1.1e-47	162.6	41.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
HAD_2	PF13419.6	gi|336252461|ref|YP_004595568.1|	-	2.4e-25	89.7	0.0	2.9e-25	89.4	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252461|ref|YP_004595568.1|	-	6.6e-16	59.2	1.6	2.2e-15	57.5	1.6	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252461|ref|YP_004595568.1|	-	7.8e-11	41.9	0.3	1.6e-10	40.9	0.3	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|336252461|ref|YP_004595568.1|	-	1.1e-07	32.5	2.2	1.5e-07	32.0	2.2	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Acid_PPase	PF12689.7	gi|336252461|ref|YP_004595568.1|	-	0.057	13.3	0.0	0.074	12.9	0.0	1.4	1	0	0	1	1	1	0	Acid	Phosphatase
Hydrolase_6	PF13344.6	gi|336252461|ref|YP_004595568.1|	-	0.071	13.2	0.0	0.17	12.0	0.0	1.6	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Abhydrolase_6	PF12697.7	gi|336252462|ref|YP_004595569.1|	-	1.4e-25	91.2	15.3	1.6e-25	91.0	15.3	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336252462|ref|YP_004595569.1|	-	3.1e-18	66.4	0.0	6.3e-14	52.2	0.1	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336252462|ref|YP_004595569.1|	-	3.7e-10	39.5	0.0	6.4e-10	38.7	0.0	1.3	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Thioesterase	PF00975.20	gi|336252462|ref|YP_004595569.1|	-	0.00044	20.4	0.0	0.00064	19.9	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	domain
DLH	PF01738.18	gi|336252462|ref|YP_004595569.1|	-	0.012	15.2	0.0	0.26	10.8	0.0	2.1	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
PGAP1	PF07819.13	gi|336252462|ref|YP_004595569.1|	-	0.13	12.0	0.0	9.7	5.8	0.0	2.1	2	0	0	2	2	2	0	PGAP1-like	protein
TFA2_Winged_2	PF18121.1	gi|336252462|ref|YP_004595569.1|	-	0.16	11.6	0.0	0.34	10.6	0.0	1.5	1	0	0	1	1	1	0	TFA2	Winged	helix	domain	2
Se-cys_synth_N	PF12390.8	gi|336252462|ref|YP_004595569.1|	-	1.3	9.3	6.6	4.1	7.7	0.0	3.6	4	0	0	4	4	4	0	Selenocysteine	synthase	N	terminal
DUF2240	PF09999.9	gi|336252464|ref|YP_004595571.1|	-	1.9e-51	173.5	0.1	2.2e-51	173.3	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
ABATE	PF07336.11	gi|336252464|ref|YP_004595571.1|	-	0.011	16.4	3.4	0.017	15.8	3.3	1.5	1	1	0	1	1	1	0	Putative	stress-induced	transcription	regulator
RVT_3	PF13456.6	gi|336252465|ref|YP_004595572.1|	-	0.00016	21.5	0.0	0.00026	20.8	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|336252465|ref|YP_004595572.1|	-	0.02	15.1	0.0	0.027	14.7	0.0	1.2	1	0	0	1	1	1	0	RNase	H
SBP_bac_5	PF00496.22	gi|336252466|ref|YP_004595573.1|	-	2.6e-68	230.7	1.2	3.3e-68	230.4	1.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
ORF_12_N	PF18042.1	gi|336252466|ref|YP_004595573.1|	-	0.2	12.1	4.0	2.9	8.4	0.2	3.3	3	0	0	3	3	3	0	ORF	12	gene	product	N-terminal
BPD_transp_1	PF00528.22	gi|336252467|ref|YP_004595574.1|	-	6.6e-40	136.8	12.0	1.2e-39	136.0	12.0	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
Sigma_reg_N	PF13800.6	gi|336252467|ref|YP_004595574.1|	-	2	8.7	4.4	8.4	6.8	0.2	3.0	3	0	0	3	3	3	0	Sigma	factor	regulator	N-terminal
BPD_transp_1	PF00528.22	gi|336252468|ref|YP_004595575.1|	-	1.1e-33	116.6	9.1	1.1e-33	116.6	9.1	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336252468|ref|YP_004595575.1|	-	0.0022	17.9	0.0	0.0022	17.9	0.0	3.1	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|336252469|ref|YP_004595576.1|	-	8.9e-24	84.6	0.0	1.6e-23	83.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336252469|ref|YP_004595576.1|	-	2.8e-17	63.0	0.0	6e-17	61.9	0.0	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336252469|ref|YP_004595576.1|	-	1.7e-07	31.4	0.2	0.00016	21.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336252469|ref|YP_004595576.1|	-	0.00087	19.6	0.3	0.12	12.7	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|336252469|ref|YP_004595576.1|	-	0.0056	16.7	0.0	0.026	14.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
DUF87	PF01935.17	gi|336252469|ref|YP_004595576.1|	-	0.019	15.0	0.0	0.062	13.4	0.0	1.7	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_16	PF13191.6	gi|336252469|ref|YP_004595576.1|	-	0.021	15.2	0.4	0.061	13.7	0.4	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336252469|ref|YP_004595576.1|	-	0.077	12.8	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|336252469|ref|YP_004595576.1|	-	0.091	12.2	0.0	6.3	6.2	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
NACHT	PF05729.12	gi|336252469|ref|YP_004595576.1|	-	0.13	12.2	0.2	0.48	10.3	0.0	2.0	2	1	0	2	2	2	0	NACHT	domain
DUF2075	PF09848.9	gi|336252469|ref|YP_004595576.1|	-	0.13	11.5	0.0	0.23	10.7	0.0	1.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.6	gi|336252469|ref|YP_004595576.1|	-	0.14	11.7	0.0	7.3	6.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|336252469|ref|YP_004595576.1|	-	0.24	10.9	0.0	0.4	10.2	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|336252470|ref|YP_004595577.1|	-	9.5e-33	113.6	0.0	1.5e-32	113.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336252470|ref|YP_004595577.1|	-	1.5e-17	63.8	0.1	3.6e-17	62.6	0.1	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336252470|ref|YP_004595577.1|	-	8.6e-07	29.0	0.5	0.00026	20.9	0.5	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336252470|ref|YP_004595577.1|	-	0.00044	20.5	0.7	0.0036	17.6	0.7	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336252470|ref|YP_004595577.1|	-	0.00098	18.6	0.1	0.0031	17.0	0.1	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_5	PF07728.14	gi|336252470|ref|YP_004595577.1|	-	0.096	12.7	0.1	2.7	8.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|336252470|ref|YP_004595577.1|	-	0.1	13.2	0.2	0.56	10.8	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
AAA_25	PF13481.6	gi|336252470|ref|YP_004595577.1|	-	0.12	12.0	0.6	6.4	6.3	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
AIG1	PF04548.16	gi|336252470|ref|YP_004595577.1|	-	0.16	11.3	0.0	0.26	10.6	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
TrwB_AAD_bind	PF10412.9	gi|336252470|ref|YP_004595577.1|	-	0.17	10.7	0.0	0.24	10.3	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_16	PF13191.6	gi|336252470|ref|YP_004595577.1|	-	0.2	12.0	8.1	0.035	14.5	1.1	2.7	2	2	1	3	3	3	0	AAA	ATPase	domain
Nup96	PF12110.8	gi|336252471|ref|YP_004595578.1|	-	0.005	16.0	0.0	0.005	16.0	0.0	1.1	1	0	0	1	1	1	1	Nuclear	protein	96
HTH_5	PF01022.20	gi|336252471|ref|YP_004595578.1|	-	0.076	12.9	0.1	0.42	10.5	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Peptidase_S76	PF13611.6	gi|336252471|ref|YP_004595578.1|	-	0.14	12.5	0.0	0.17	12.2	0.0	1.3	1	0	0	1	1	1	0	Serine	peptidase	of	plant	viral	polyprotein,	P1
EamA	PF00892.20	gi|336252472|ref|YP_004595579.1|	-	4.6e-37	127.2	25.1	1.4e-20	73.9	9.2	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
TMEM234	PF10639.9	gi|336252472|ref|YP_004595579.1|	-	8.5	6.4	8.8	0.84	9.7	0.4	2.6	3	0	0	3	3	3	0	Putative	transmembrane	family	234
AAA	PF00004.29	gi|336252474|ref|YP_004595581.1|	-	2.2e-100	332.3	0.0	2.1e-49	167.3	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|336252474|ref|YP_004595581.1|	-	1.2e-30	105.5	0.0	6.7e-30	103.1	0.1	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|336252474|ref|YP_004595581.1|	-	6.5e-30	102.7	2.3	1.4e-14	53.6	1.0	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_2	PF02933.17	gi|336252474|ref|YP_004595581.1|	-	1.4e-15	56.8	0.2	8e-15	54.4	0.2	2.2	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|336252474|ref|YP_004595581.1|	-	3.2e-15	56.2	0.0	8e-07	28.9	0.0	2.9	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|336252474|ref|YP_004595581.1|	-	8.1e-14	52.4	1.1	1.3e-05	25.7	0.2	4.3	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|336252474|ref|YP_004595581.1|	-	1e-12	48.5	0.0	1.8e-05	24.9	0.0	2.8	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|336252474|ref|YP_004595581.1|	-	1.3e-12	47.9	1.9	0.0001	22.3	0.1	4.2	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|336252474|ref|YP_004595581.1|	-	4.3e-11	43.2	0.5	0.0011	19.2	0.1	4.1	2	2	1	4	4	4	2	AAA	domain
AAA_33	PF13671.6	gi|336252474|ref|YP_004595581.1|	-	1e-10	41.9	0.0	6.8e-05	23.1	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|336252474|ref|YP_004595581.1|	-	1.2e-10	41.2	0.0	0.00041	19.7	0.0	3.2	3	0	0	3	3	3	2	TIP49	P-loop	domain
IstB_IS21	PF01695.17	gi|336252474|ref|YP_004595581.1|	-	8.4e-08	32.2	0.0	0.017	14.9	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|336252474|ref|YP_004595581.1|	-	1.2e-07	31.9	0.0	0.005	16.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|336252474|ref|YP_004595581.1|	-	5.7e-07	30.1	0.0	0.067	13.7	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|336252474|ref|YP_004595581.1|	-	6.8e-07	29.6	0.0	0.057	13.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|336252474|ref|YP_004595581.1|	-	1.2e-06	28.0	0.1	0.055	12.8	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|336252474|ref|YP_004595581.1|	-	1.4e-06	28.0	1.6	2.1	7.9	0.0	4.4	4	0	0	4	4	4	1	AAA	domain
AAA_7	PF12775.7	gi|336252474|ref|YP_004595581.1|	-	4.9e-06	26.2	0.0	0.12	11.8	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|336252474|ref|YP_004595581.1|	-	7e-06	25.8	0.0	0.2	11.3	0.0	3.1	3	0	0	3	3	2	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|336252474|ref|YP_004595581.1|	-	7.2e-06	25.9	0.0	0.085	12.7	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|336252474|ref|YP_004595581.1|	-	9e-06	26.0	0.0	0.038	14.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336252474|ref|YP_004595581.1|	-	2.1e-05	24.0	0.9	0.5	9.7	0.0	3.5	4	0	0	4	4	3	2	KaiC
TsaE	PF02367.17	gi|336252474|ref|YP_004595581.1|	-	2.4e-05	24.3	0.0	0.18	11.8	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_24	PF13479.6	gi|336252474|ref|YP_004595581.1|	-	3.7e-05	23.6	0.0	0.14	11.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
DUF815	PF05673.13	gi|336252474|ref|YP_004595581.1|	-	4.4e-05	22.8	0.0	0.24	10.5	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Vps4_C	PF09336.10	gi|336252474|ref|YP_004595581.1|	-	5e-05	23.2	0.6	0.015	15.2	0.0	2.9	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
PhoH	PF02562.16	gi|336252474|ref|YP_004595581.1|	-	6.2e-05	22.5	0.8	0.44	10.0	0.0	3.1	3	0	0	3	3	3	2	PhoH-like	protein
ABC_tran	PF00005.27	gi|336252474|ref|YP_004595581.1|	-	6.7e-05	23.4	0.0	0.46	11.0	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_30	PF13604.6	gi|336252474|ref|YP_004595581.1|	-	7.2e-05	22.6	0.5	0.51	10.0	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
AAA_11	PF13086.6	gi|336252474|ref|YP_004595581.1|	-	7.3e-05	22.7	0.0	0.31	10.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|336252474|ref|YP_004595581.1|	-	0.00013	21.3	0.0	0.12	11.5	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
ATPase_2	PF01637.18	gi|336252474|ref|YP_004595581.1|	-	0.00025	21.1	0.0	0.88	9.4	0.0	3.5	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
DUF2075	PF09848.9	gi|336252474|ref|YP_004595581.1|	-	0.0003	20.2	0.0	0.34	10.1	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_17	PF13207.6	gi|336252474|ref|YP_004595581.1|	-	0.00038	20.9	0.0	1	9.8	0.0	3.5	4	0	0	4	4	2	1	AAA	domain
Parvo_NS1	PF01057.17	gi|336252474|ref|YP_004595581.1|	-	0.00044	19.4	0.2	0.51	9.4	0.1	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NACHT	PF05729.12	gi|336252474|ref|YP_004595581.1|	-	0.00046	20.1	0.2	0.57	10.1	0.0	3.1	3	0	0	3	3	2	1	NACHT	domain
Zeta_toxin	PF06414.12	gi|336252474|ref|YP_004595581.1|	-	0.00053	19.3	0.3	0.89	8.8	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
Sigma54_activ_2	PF14532.6	gi|336252474|ref|YP_004595581.1|	-	0.0017	18.5	0.0	2.9	8.0	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
IPT	PF01745.16	gi|336252474|ref|YP_004595581.1|	-	0.0018	17.8	0.9	0.54	9.6	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
NTPase_1	PF03266.15	gi|336252474|ref|YP_004595581.1|	-	0.0021	18.0	0.3	3.9	7.3	0.0	3.2	2	1	1	3	3	2	0	NTPase
AAA_19	PF13245.6	gi|336252474|ref|YP_004595581.1|	-	0.0028	18.0	0.8	4.2	7.7	0.0	2.9	2	1	0	3	3	2	0	AAA	domain
Bac_DnaA	PF00308.18	gi|336252474|ref|YP_004595581.1|	-	0.0056	16.5	0.0	4.1	7.2	0.0	2.7	2	0	0	2	2	2	0	Bacterial	dnaA	protein
Cytidylate_kin	PF02224.18	gi|336252474|ref|YP_004595581.1|	-	0.0074	16.0	0.1	4.4	7.0	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
Viral_helicase1	PF01443.18	gi|336252474|ref|YP_004595581.1|	-	0.015	15.0	0.0	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
ResIII	PF04851.15	gi|336252474|ref|YP_004595581.1|	-	0.021	14.8	0.0	8.8	6.3	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
KAP_NTPase	PF07693.14	gi|336252474|ref|YP_004595581.1|	-	0.023	13.9	0.1	4.6	6.4	0.0	2.8	2	2	0	3	3	3	0	KAP	family	P-loop	domain
SKI	PF01202.22	gi|336252474|ref|YP_004595581.1|	-	0.033	14.3	0.0	7.8	6.6	0.0	2.5	2	0	0	2	2	2	0	Shikimate	kinase
Hydin_ADK	PF17213.3	gi|336252474|ref|YP_004595581.1|	-	0.034	14.4	0.0	4.1	7.6	0.0	2.4	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
Zot	PF05707.12	gi|336252474|ref|YP_004595581.1|	-	0.042	13.5	0.0	4.3	6.9	0.0	2.6	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
CPT	PF07931.12	gi|336252474|ref|YP_004595581.1|	-	0.047	13.5	0.0	3.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Rad17	PF03215.15	gi|336252474|ref|YP_004595581.1|	-	0.054	13.4	0.0	11	5.9	0.0	2.7	2	1	0	2	2	2	0	Rad17	P-loop	domain
Torsin	PF06309.11	gi|336252474|ref|YP_004595581.1|	-	0.056	13.6	0.0	4.6	7.4	0.0	2.4	2	0	0	2	2	2	0	Torsin
AFG1_ATPase	PF03969.16	gi|336252474|ref|YP_004595581.1|	-	0.07	12.0	0.0	1.9	7.3	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
Cytidylate_kin2	PF13189.6	gi|336252474|ref|YP_004595581.1|	-	0.092	12.9	0.0	8.8	6.4	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Guanylate_kin	PF00625.21	gi|336252474|ref|YP_004595581.1|	-	0.25	11.0	0.5	68	3.1	0.0	3.4	3	1	1	4	4	3	0	Guanylate	kinase
DUF111	PF01969.17	gi|336252475|ref|YP_004595582.1|	-	5.9e-135	450.1	5.9	9e-135	449.5	5.9	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF111
Transcrip_reg	PF01709.20	gi|336252475|ref|YP_004595582.1|	-	0.0067	15.9	0.1	0.032	13.6	0.1	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
Zip	PF02535.22	gi|336252475|ref|YP_004595582.1|	-	0.1	11.8	6.3	0.14	11.4	6.3	1.1	1	0	0	1	1	1	0	ZIP	Zinc	transporter
SelP_N	PF04592.14	gi|336252475|ref|YP_004595582.1|	-	4.7	6.5	19.1	8.2	5.8	19.1	1.3	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
DUF460	PF04312.13	gi|336252481|ref|YP_004595588.1|	-	0.026	14.2	0.2	0.06	13.0	0.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
Big_3_3	PF13750.6	gi|336252481|ref|YP_004595588.1|	-	0.064	12.9	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	3)
Rad51	PF08423.11	gi|336252482|ref|YP_004595589.1|	-	5.5e-27	94.6	0.1	2.6e-26	92.4	0.1	1.8	1	1	0	1	1	1	1	Rad51
AAA_25	PF13481.6	gi|336252482|ref|YP_004595589.1|	-	2.9e-12	46.6	0.6	4.7e-12	45.9	0.6	1.2	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|336252482|ref|YP_004595589.1|	-	5.9e-11	42.3	0.5	2.6e-09	36.9	0.1	2.1	1	1	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|336252482|ref|YP_004595589.1|	-	1.8e-09	37.3	0.0	6.3e-09	35.5	0.0	1.8	1	1	0	1	1	1	1	KaiC
Zot	PF05707.12	gi|336252482|ref|YP_004595589.1|	-	7.1e-08	32.3	0.0	1.1e-07	31.6	0.0	1.3	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_24	PF13479.6	gi|336252482|ref|YP_004595589.1|	-	1.1e-06	28.5	0.0	5.6e-06	26.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|336252482|ref|YP_004595589.1|	-	2.6e-06	27.0	0.0	3.5e-06	26.5	0.0	1.1	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.17	gi|336252482|ref|YP_004595589.1|	-	0.05	13.3	0.1	0.15	11.8	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Isochorismatase	PF00857.20	gi|336252482|ref|YP_004595589.1|	-	0.075	13.2	0.0	0.14	12.3	0.0	1.4	1	0	0	1	1	1	0	Isochorismatase	family
DUF1805	PF08827.11	gi|336252482|ref|YP_004595589.1|	-	0.14	12.5	0.2	0.36	11.2	0.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1805)
ATPase_2	PF01637.18	gi|336252482|ref|YP_004595589.1|	-	0.16	11.9	0.0	0.21	11.5	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
BAT	PF15915.5	gi|336252483|ref|YP_004595590.1|	-	1.1e-31	109.8	1.4	1.7e-31	109.2	1.4	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336252483|ref|YP_004595590.1|	-	1.8e-21	75.7	0.0	2.6e-21	75.2	0.0	1.2	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|336252483|ref|YP_004595590.1|	-	0.0006	19.4	0.2	0.0081	15.8	0.2	2.2	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_Tnp_1_2	PF13022.6	gi|336252483|ref|YP_004595590.1|	-	0.048	13.8	0.0	0.088	13.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
CBS	PF00571.28	gi|336252484|ref|YP_004595591.1|	-	8.6e-36	122.2	11.9	6.9e-12	45.6	1.4	4.5	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|336252484|ref|YP_004595591.1|	-	0.0031	18.3	0.2	0.01	16.6	0.1	1.9	1	1	0	1	1	1	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
GAF	PF01590.26	gi|336252484|ref|YP_004595591.1|	-	0.017	15.8	0.1	8.8	7.0	0.0	3.1	2	2	1	3	3	3	0	GAF	domain
DUF3126	PF11324.8	gi|336252484|ref|YP_004595591.1|	-	0.038	13.8	0.4	0.85	9.5	0.2	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3126)
CAP	PF00188.26	gi|336252486|ref|YP_004595593.1|	-	3.8e-12	47.2	0.1	5.7e-12	46.6	0.1	1.3	1	0	0	1	1	1	1	Cysteine-rich	secretory	protein	family
Virul_fac_BrkB	PF03631.15	gi|336252487|ref|YP_004595594.1|	-	2.4e-45	155.2	26.2	2.7e-45	155.0	26.2	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
PRCC	PF10253.9	gi|336252488|ref|YP_004595595.1|	-	1.4	9.7	10.6	2	9.2	10.6	1.3	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
Mem_trans	PF03547.18	gi|336252489|ref|YP_004595596.1|	-	2.4e-23	82.2	23.0	3.6e-14	52.0	12.2	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
DUF412	PF04217.13	gi|336252489|ref|YP_004595596.1|	-	0.55	10.1	2.5	0.74	9.7	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF412
Glycos_transf_3	PF00591.21	gi|336252490|ref|YP_004595597.1|	-	3.7e-98	328.1	2.9	4.9e-98	327.7	2.9	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|336252490|ref|YP_004595597.1|	-	1.1e-16	60.4	7.0	2.1e-16	59.5	4.4	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.8	gi|336252490|ref|YP_004595597.1|	-	0.0094	15.6	0.0	0.025	14.3	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2717)
PRAI	PF00697.22	gi|336252491|ref|YP_004595598.1|	-	1e-41	142.9	0.0	1.2e-41	142.7	0.0	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
FMN_dh	PF01070.18	gi|336252491|ref|YP_004595598.1|	-	0.059	12.4	0.0	0.23	10.5	0.0	1.9	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
TMP-TENI	PF02581.17	gi|336252491|ref|YP_004595598.1|	-	0.07	12.5	0.1	0.21	10.9	0.0	1.9	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
Chorismate_bind	PF00425.18	gi|336252492|ref|YP_004595599.1|	-	4.4e-91	305.0	0.0	8.8e-90	300.7	0.0	2.1	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|336252492|ref|YP_004595599.1|	-	4.2e-18	65.9	0.1	1.9e-15	57.3	0.0	3.5	2	1	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|336252493|ref|YP_004595600.1|	-	1.9e-45	155.0	0.0	2.1e-45	154.8	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|336252493|ref|YP_004595600.1|	-	7e-07	29.2	0.1	3.3e-06	27.0	0.1	1.8	1	1	0	1	1	1	1	Peptidase	C26
HTH_CodY	PF08222.11	gi|336252494|ref|YP_004595601.1|	-	0.18	11.4	1.6	0.27	10.8	1.6	1.3	1	1	0	1	1	1	0	CodY	helix-turn-helix	domain
VPDSG-CTERM	PF18205.1	gi|336252494|ref|YP_004595601.1|	-	6.1	6.8	9.2	1.9	8.4	5.8	2.0	2	0	0	2	2	2	0	VPDSG-CTERM	motif
Ribonuc_red_lgC	PF02867.15	gi|336252495|ref|YP_004595602.1|	-	2.3e-155	518.1	0.0	2.8e-155	517.8	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|336252495|ref|YP_004595602.1|	-	5.2e-25	87.3	0.1	2e-24	85.4	0.0	2.1	2	0	0	2	2	2	1	Ribonucleotide	reductase,	all-alpha	domain
DUF2461	PF09365.10	gi|336252495|ref|YP_004595602.1|	-	0.00087	19.3	0.1	0.042	13.8	0.0	3.1	3	0	0	3	3	3	1	Conserved	hypothetical	protein	(DUF2461)
zf-ACC	PF17848.1	gi|336252496|ref|YP_004595603.1|	-	0.083	13.0	4.0	0.83	9.8	4.0	2.1	1	1	0	1	1	1	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-Mss51	PF13824.6	gi|336252496|ref|YP_004595603.1|	-	0.14	12.3	8.1	0.16	12.1	8.1	1.1	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Ogr_Delta	PF04606.12	gi|336252496|ref|YP_004595603.1|	-	0.19	11.7	6.2	0.29	11.1	6.2	1.5	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
ATPase	PF06745.13	gi|336252497|ref|YP_004595604.1|	-	2.7e-45	154.5	0.0	3e-45	154.4	0.0	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|336252497|ref|YP_004595604.1|	-	9.7e-08	31.1	0.1	0.0011	17.7	0.0	2.7	2	1	1	3	3	3	2	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|336252497|ref|YP_004595604.1|	-	1.7e-06	27.5	0.0	3e-06	26.8	0.0	1.3	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|336252497|ref|YP_004595604.1|	-	0.0002	21.0	0.0	0.0007	19.2	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|336252497|ref|YP_004595604.1|	-	0.00045	20.2	0.0	0.0021	18.1	0.0	2.1	3	0	0	3	3	2	1	AAA	domain
AAA_24	PF13479.6	gi|336252497|ref|YP_004595604.1|	-	0.00053	19.8	0.0	0.0021	17.8	0.0	1.8	1	1	1	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|336252497|ref|YP_004595604.1|	-	0.00095	19.6	0.2	0.0073	16.7	0.2	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|336252497|ref|YP_004595604.1|	-	0.0051	17.1	0.0	0.0071	16.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|336252497|ref|YP_004595604.1|	-	0.0057	16.9	0.0	0.17	12.1	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
ATP_bind_1	PF03029.17	gi|336252497|ref|YP_004595604.1|	-	0.0071	16.2	0.0	0.015	15.1	0.0	1.6	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_33	PF13671.6	gi|336252497|ref|YP_004595604.1|	-	0.0091	16.2	0.0	0.018	15.2	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|336252497|ref|YP_004595604.1|	-	0.012	14.9	0.1	0.022	14.0	0.1	1.4	1	0	0	1	1	1	0	Rad51
AAA_18	PF13238.6	gi|336252497|ref|YP_004595604.1|	-	0.015	15.9	0.0	0.028	15.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RecA	PF00154.21	gi|336252497|ref|YP_004595604.1|	-	0.016	14.7	0.1	0.45	9.9	0.0	2.6	3	0	0	3	3	3	0	recA	bacterial	DNA	recombination	protein
AAA_16	PF13191.6	gi|336252497|ref|YP_004595604.1|	-	0.019	15.3	0.0	0.032	14.6	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|336252497|ref|YP_004595604.1|	-	0.019	14.9	0.0	0.026	14.4	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
T2SSE	PF00437.20	gi|336252497|ref|YP_004595604.1|	-	0.031	13.3	0.0	0.049	12.7	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
PAXNEB	PF05625.11	gi|336252497|ref|YP_004595604.1|	-	0.033	13.3	0.1	0.62	9.1	0.0	2.0	1	1	0	2	2	2	0	PAXNEB	protein
cobW	PF02492.19	gi|336252497|ref|YP_004595604.1|	-	0.044	13.4	0.0	0.14	11.7	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.17	gi|336252497|ref|YP_004595604.1|	-	0.046	13.5	0.0	0.078	12.7	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|336252497|ref|YP_004595604.1|	-	0.056	12.6	0.0	0.084	12.1	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
DUF2075	PF09848.9	gi|336252497|ref|YP_004595604.1|	-	0.058	12.6	0.0	0.071	12.3	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.15	gi|336252497|ref|YP_004595604.1|	-	0.066	13.1	0.3	0.19	11.6	0.1	1.8	2	0	0	2	2	2	0	NTPase
RNA_helicase	PF00910.22	gi|336252497|ref|YP_004595604.1|	-	0.067	13.6	0.1	0.14	12.6	0.0	1.6	1	1	0	1	1	1	0	RNA	helicase
Viral_helicase1	PF01443.18	gi|336252497|ref|YP_004595604.1|	-	0.083	12.6	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
NACHT	PF05729.12	gi|336252497|ref|YP_004595604.1|	-	0.12	12.3	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_30	PF13604.6	gi|336252497|ref|YP_004595604.1|	-	0.12	12.1	0.0	0.23	11.1	0.0	1.4	2	0	0	2	2	1	0	AAA	domain
AAA_17	PF13207.6	gi|336252497|ref|YP_004595604.1|	-	0.13	12.7	0.2	0.24	11.8	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|336252497|ref|YP_004595604.1|	-	0.15	11.8	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MEDS	PF14417.6	gi|336252497|ref|YP_004595604.1|	-	0.16	11.8	0.0	0.38	10.6	0.0	1.4	1	1	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
GspL_C	PF12693.7	gi|336252498|ref|YP_004595605.1|	-	0.13	12.1	0.1	0.21	11.4	0.1	1.3	1	0	0	1	1	1	0	GspL	periplasmic	domain
SNARE_assoc	PF09335.11	gi|336252499|ref|YP_004595606.1|	-	9.9e-14	51.9	0.7	9.9e-14	51.9	0.7	1.9	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
bPH_1	PF08000.11	gi|336252501|ref|YP_004595608.1|	-	0.092	12.8	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	PH	domain
SlyX	PF04102.12	gi|336252501|ref|YP_004595608.1|	-	0.12	13.0	4.1	0.43	11.2	4.1	2.0	1	0	0	1	1	1	0	SlyX
HalOD1	PF18545.1	gi|336252502|ref|YP_004595609.1|	-	6.3e-22	77.6	1.9	8.8e-22	77.2	1.9	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
N6_N4_Mtase	PF01555.18	gi|336252503|ref|YP_004595610.1|	-	1.3e-34	119.9	0.0	1.7e-34	119.6	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
UPF0020	PF01170.18	gi|336252503|ref|YP_004595610.1|	-	0.078	12.7	0.0	5.4	6.6	0.0	2.3	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|336252503|ref|YP_004595610.1|	-	0.13	12.9	0.3	11	6.7	0.2	3.1	2	1	0	2	2	2	0	Methyltransferase	domain
Peptidase_S46	PF10459.9	gi|336252504|ref|YP_004595611.1|	-	0.0032	16.2	0.2	0.0048	15.6	0.2	1.1	1	0	0	1	1	1	1	Peptidase	S46
PEP-CTERM	PF07589.11	gi|336252504|ref|YP_004595611.1|	-	7.6	6.8	11.3	2.1	8.6	1.8	2.5	2	0	0	2	2	2	0	PEP-CTERM	motif
FMN_red	PF03358.15	gi|336252506|ref|YP_004595613.1|	-	3.9e-35	120.9	0.0	4.6e-35	120.7	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|336252506|ref|YP_004595613.1|	-	1.1e-10	41.5	0.0	1.6e-10	41.0	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin-like	fold
ABC_tran	PF00005.27	gi|336252507|ref|YP_004595614.1|	-	9.4e-30	103.9	0.0	1.4e-29	103.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252507|ref|YP_004595614.1|	-	1.2e-14	54.9	0.0	8.6e-10	38.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336252507|ref|YP_004595614.1|	-	9.1e-08	32.7	0.0	1.7e-07	31.9	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|336252507|ref|YP_004595614.1|	-	0.0033	17.1	0.0	0.0072	16.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|336252507|ref|YP_004595614.1|	-	0.0096	15.7	0.0	2.2	7.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|336252507|ref|YP_004595614.1|	-	0.012	15.0	0.0	1.5	8.2	0.0	2.3	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|336252507|ref|YP_004595614.1|	-	0.023	14.6	0.0	0.032	14.1	0.0	1.1	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|336252507|ref|YP_004595614.1|	-	0.029	14.9	0.8	0.053	14.0	0.7	1.3	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336252507|ref|YP_004595614.1|	-	0.029	14.8	0.0	0.15	12.5	0.0	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|336252507|ref|YP_004595614.1|	-	0.031	14.7	0.1	0.073	13.5	0.1	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|336252507|ref|YP_004595614.1|	-	0.04	13.6	0.0	0.072	12.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Erythro_esteras	PF05139.14	gi|336252507|ref|YP_004595614.1|	-	0.079	12.8	0.1	0.14	12.0	0.1	1.3	1	0	0	1	1	1	0	Erythromycin	esterase
SRP54	PF00448.22	gi|336252507|ref|YP_004595614.1|	-	0.08	12.6	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Mg_chelatase	PF01078.21	gi|336252507|ref|YP_004595614.1|	-	0.2	11.0	0.0	0.31	10.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC2_membrane	PF01061.24	gi|336252508|ref|YP_004595615.1|	-	2.7e-33	115.2	10.8	3.3e-33	114.9	10.8	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|336252508|ref|YP_004595615.1|	-	8.5e-17	61.3	8.9	8.5e-17	61.3	8.9	1.5	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336252508|ref|YP_004595615.1|	-	0.0045	16.3	16.8	0.013	14.8	16.8	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
Fusion_gly	PF00523.18	gi|336252508|ref|YP_004595615.1|	-	0.12	10.6	2.5	0.17	10.1	2.5	1.3	1	0	0	1	1	1	0	Fusion	glycoprotein	F0
HhH-GPD	PF00730.25	gi|336252509|ref|YP_004595616.1|	-	7.5e-17	61.7	0.0	1.2e-16	61.0	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|336252509|ref|YP_004595616.1|	-	1.7e-09	37.0	0.0	3.7e-09	36.0	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
CitG	PF01874.16	gi|336252510|ref|YP_004595617.1|	-	3e-67	227.2	4.6	3.3e-67	227.1	4.6	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DUF447	PF04289.12	gi|336252511|ref|YP_004595618.1|	-	2.2e-40	138.3	0.0	2.7e-40	138.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
DUF5337	PF17272.2	gi|336252512|ref|YP_004595619.1|	-	0.39	10.6	8.1	1.3	8.9	8.1	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5337)
Phage_holin_3_6	PF07332.11	gi|336252512|ref|YP_004595619.1|	-	0.84	9.7	26.1	0.1	12.7	10.8	2.4	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF2628	PF10947.8	gi|336252512|ref|YP_004595619.1|	-	5.1	7.5	17.6	0.34	11.3	0.9	3.1	2	2	0	3	3	3	0	Protein	of	unknown	function	(DUF2628)
DUF4131	PF13567.6	gi|336252512|ref|YP_004595619.1|	-	10	5.8	9.1	0.35	10.5	2.2	2.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Ribosomal_S17e	PF00833.18	gi|336252513|ref|YP_004595620.1|	-	1.7e-12	47.3	0.1	2.1e-12	47.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	S17
HNF-1_N	PF04814.13	gi|336252513|ref|YP_004595620.1|	-	0.067	13.8	0.0	0.067	13.8	0.0	1.0	1	0	0	1	1	1	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
DUF4019	PF13211.6	gi|336252513|ref|YP_004595620.1|	-	0.079	13.4	0.0	0.099	13.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4019)
DctQ	PF04290.12	gi|336252514|ref|YP_004595621.1|	-	0.22	11.5	6.2	0.31	11.0	6.2	1.2	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
OppC_N	PF12911.7	gi|336252514|ref|YP_004595621.1|	-	3.1	7.8	7.6	8.2	6.5	2.6	2.1	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Semialdhyde_dh	PF01118.24	gi|336252515|ref|YP_004595622.1|	-	2.2e-35	121.7	0.0	3.6e-35	121.0	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|336252515|ref|YP_004595622.1|	-	6.5e-29	101.3	0.0	1e-28	100.7	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|336252515|ref|YP_004595622.1|	-	8.9e-05	22.6	0.0	0.00016	21.8	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.16	gi|336252515|ref|YP_004595622.1|	-	9.7e-05	23.1	0.0	0.00018	22.2	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Gp_dh_C	PF02800.20	gi|336252515|ref|YP_004595622.1|	-	0.0019	17.8	0.0	0.0039	16.8	0.0	1.5	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
GFO_IDH_MocA	PF01408.22	gi|336252515|ref|YP_004595622.1|	-	0.027	15.3	0.0	0.054	14.3	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
HTH_20	PF12840.7	gi|336252516|ref|YP_004595623.1|	-	8.8e-06	25.7	0.5	8.6e-05	22.5	0.5	2.3	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252516|ref|YP_004595623.1|	-	0.061	13.2	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Usp	PF00582.26	gi|336252517|ref|YP_004595624.1|	-	1.2e-10	42.0	0.4	1.4e-10	41.8	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
2-Hacid_dh_C	PF02826.19	gi|336252518|ref|YP_004595625.1|	-	1.5e-53	180.8	0.0	2.2e-53	180.3	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|336252518|ref|YP_004595625.1|	-	7.3e-12	45.1	0.0	8.6e-12	44.9	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
IlvN	PF07991.12	gi|336252518|ref|YP_004595625.1|	-	0.0073	15.9	0.0	0.096	12.3	0.0	2.1	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ThiF	PF00899.21	gi|336252518|ref|YP_004595625.1|	-	0.0084	15.5	0.0	0.013	14.8	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
NAD_binding_7	PF13241.6	gi|336252518|ref|YP_004595625.1|	-	0.013	15.9	0.0	0.03	14.8	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|336252518|ref|YP_004595625.1|	-	0.02	15.4	0.0	0.043	14.4	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF4440	PF14534.6	gi|336252518|ref|YP_004595625.1|	-	0.021	15.2	0.1	0.26	11.7	0.0	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4440)
TrkA_N	PF02254.18	gi|336252518|ref|YP_004595625.1|	-	0.052	13.8	0.8	0.96	9.7	0.1	2.8	3	0	0	3	3	3	0	TrkA-N	domain
DAO	PF01266.24	gi|336252519|ref|YP_004595626.1|	-	6.3e-11	42.4	2.7	1.7e-05	24.6	0.0	2.4	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336252519|ref|YP_004595626.1|	-	8.9e-11	41.6	0.0	6.3e-06	25.6	0.2	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|336252519|ref|YP_004595626.1|	-	2.9e-08	33.3	0.1	0.00097	18.5	0.1	2.1	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|336252519|ref|YP_004595626.1|	-	2.2e-06	27.8	0.3	0.023	14.7	0.0	2.5	3	0	0	3	3	3	2	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|336252519|ref|YP_004595626.1|	-	6.6e-06	25.1	0.5	0.00071	18.4	1.3	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|336252519|ref|YP_004595626.1|	-	6.9e-06	25.7	0.0	1.2e-05	24.9	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336252519|ref|YP_004595626.1|	-	8.5e-05	21.8	0.4	0.00018	20.7	0.4	1.6	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|336252519|ref|YP_004595626.1|	-	0.00012	22.2	0.2	0.00035	20.7	0.2	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|336252519|ref|YP_004595626.1|	-	0.0003	19.8	0.2	0.039	12.8	0.0	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
GIDA	PF01134.22	gi|336252519|ref|YP_004595626.1|	-	0.00034	19.8	3.4	0.00051	19.2	0.1	2.3	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|336252519|ref|YP_004595626.1|	-	0.024	13.7	0.2	0.1	11.6	0.2	1.8	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|336252519|ref|YP_004595626.1|	-	0.041	13.1	0.0	0.074	12.3	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|336252519|ref|YP_004595626.1|	-	0.046	13.0	0.1	0.069	12.4	0.1	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|336252519|ref|YP_004595626.1|	-	0.065	13.8	0.1	1.3	9.6	0.3	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|336252519|ref|YP_004595626.1|	-	0.091	12.0	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252519|ref|YP_004595626.1|	-	0.2	10.8	0.3	0.54	9.5	0.4	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HTH_20	PF12840.7	gi|336252521|ref|YP_004595628.1|	-	1.6e-12	47.3	0.7	2.5e-12	46.7	0.3	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336252521|ref|YP_004595628.1|	-	0.00033	20.4	0.1	0.00062	19.5	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336252521|ref|YP_004595628.1|	-	0.0017	18.2	0.2	0.0041	17.0	0.1	1.6	2	0	0	2	2	2	1	MarR	family
pXO2-72	PF17443.2	gi|336252521|ref|YP_004595628.1|	-	0.0029	17.8	0.0	0.0042	17.3	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	pXO2-72
TrmB	PF01978.19	gi|336252521|ref|YP_004595628.1|	-	0.0036	17.1	0.0	0.007	16.2	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|336252521|ref|YP_004595628.1|	-	0.0062	16.4	0.6	0.0086	15.9	0.1	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_7	PF02796.15	gi|336252521|ref|YP_004595628.1|	-	0.016	15.3	0.0	0.033	14.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.12	gi|336252521|ref|YP_004595628.1|	-	0.022	14.7	0.1	0.045	13.7	0.1	1.5	1	0	0	1	1	1	0	HTH	domain
FUR	PF01475.19	gi|336252521|ref|YP_004595628.1|	-	0.066	13.4	0.0	0.1	12.7	0.0	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
Rax2	PF12768.7	gi|336252522|ref|YP_004595629.1|	-	0.066	12.7	0.6	0.13	11.7	0.6	1.4	1	0	0	1	1	1	0	Cortical	protein	marker	for	cell	polarity
DUF485	PF04341.12	gi|336252522|ref|YP_004595629.1|	-	8.8	6.4	9.7	0.96	9.4	4.3	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF485
Cu-oxidase_2	PF07731.14	gi|336252523|ref|YP_004595630.1|	-	7.2e-29	100.3	6.9	6.4e-16	58.3	0.1	2.9	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_3	PF07732.15	gi|336252523|ref|YP_004595630.1|	-	6.2e-23	81.1	2.1	7.9e-17	61.4	0.3	2.4	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase	PF00394.22	gi|336252523|ref|YP_004595630.1|	-	3.9e-11	43.3	0.0	9.6e-11	42.0	0.0	1.7	2	0	0	2	2	2	1	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|336252523|ref|YP_004595630.1|	-	0.016	15.3	0.0	1.1	9.5	0.0	2.7	2	1	0	2	2	2	0	Cupredoxin-like	domain
Pyr_redox_2	PF07992.14	gi|336252524|ref|YP_004595631.1|	-	5.4e-66	222.8	3.9	5.4e-66	222.8	3.9	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|336252524|ref|YP_004595631.1|	-	8.1e-37	125.8	0.8	1.5e-36	125.0	0.1	1.9	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|336252524|ref|YP_004595631.1|	-	3.3e-24	85.3	1.5	2.7e-20	72.7	0.0	3.4	4	0	0	4	4	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|336252524|ref|YP_004595631.1|	-	3e-11	43.0	1.4	4.5e-08	32.6	0.7	2.4	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|336252524|ref|YP_004595631.1|	-	2.3e-08	33.7	0.1	0.0041	16.4	0.1	3.1	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|336252524|ref|YP_004595631.1|	-	2.4e-08	33.5	7.2	4.5e-06	26.0	0.4	3.2	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|336252524|ref|YP_004595631.1|	-	3.5e-08	33.5	0.5	0.003	17.7	0.2	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|336252524|ref|YP_004595631.1|	-	9.6e-08	31.1	3.1	1.3e-05	24.1	0.1	2.6	3	0	0	3	3	3	2	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|336252524|ref|YP_004595631.1|	-	6e-07	29.0	2.9	0.0096	15.2	0.6	3.2	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_oxidored	PF12831.7	gi|336252524|ref|YP_004595631.1|	-	3.9e-06	26.5	0.4	3.9e-06	26.5	0.4	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336252524|ref|YP_004595631.1|	-	1.5e-05	24.4	2.3	0.036	13.3	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336252524|ref|YP_004595631.1|	-	2.1e-05	24.2	0.6	0.00098	18.7	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|336252524|ref|YP_004595631.1|	-	0.00016	21.6	0.2	0.0011	18.9	0.0	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|336252524|ref|YP_004595631.1|	-	0.00022	20.6	2.8	0.048	12.9	0.3	3.0	3	0	0	3	3	3	2	Thi4	family
DAO	PF01266.24	gi|336252524|ref|YP_004595631.1|	-	0.00031	20.4	14.9	0.027	14.1	1.1	3.6	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|336252524|ref|YP_004595631.1|	-	0.00083	19.8	0.2	1.2	9.7	0.0	2.7	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|336252524|ref|YP_004595631.1|	-	0.00089	18.4	3.2	0.13	11.3	0.6	2.4	2	1	0	2	2	2	2	Lycopene	cyclase	protein
TrkA_N	PF02254.18	gi|336252524|ref|YP_004595631.1|	-	0.0015	18.7	0.2	0.44	10.8	0.0	2.8	2	0	0	2	2	2	1	TrkA-N	domain
Trp_halogenase	PF04820.14	gi|336252524|ref|YP_004595631.1|	-	0.0066	15.4	1.5	0.029	13.2	0.1	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
2-Hacid_dh_C	PF02826.19	gi|336252524|ref|YP_004595631.1|	-	0.028	13.8	0.2	0.87	8.9	0.0	2.8	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|336252524|ref|YP_004595631.1|	-	0.037	14.5	5.4	0.26	11.8	1.5	3.3	3	1	0	3	3	2	0	XdhC	Rossmann	domain
2-oxoacid_dh	PF00198.23	gi|336252525|ref|YP_004595632.1|	-	3.1e-89	298.4	0.0	4.1e-89	298.0	0.0	1.2	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|336252525|ref|YP_004595632.1|	-	4.6e-24	84.0	2.0	9.2e-24	83.1	2.0	1.5	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|336252525|ref|YP_004595632.1|	-	1.6e-22	79.6	0.8	5.7e-16	58.6	0.1	3.1	3	0	0	3	3	3	2	e3	binding	domain
Biotin_lipoyl_2	PF13533.6	gi|336252525|ref|YP_004595632.1|	-	5.4e-07	29.3	0.9	0.003	17.3	0.4	2.7	1	1	1	2	2	2	2	Biotin-lipoyl	like
GCV_H	PF01597.19	gi|336252525|ref|YP_004595632.1|	-	2.1e-05	24.4	0.8	5.4e-05	23.1	0.8	1.8	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.6	gi|336252525|ref|YP_004595632.1|	-	0.002	18.1	0.5	0.0043	17.0	0.5	1.6	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
HlyD_3	PF13437.6	gi|336252525|ref|YP_004595632.1|	-	0.008	16.9	2.7	0.15	12.8	0.3	2.6	1	1	1	2	2	2	1	HlyD	family	secretion	protein
HlyD_D23	PF16576.5	gi|336252525|ref|YP_004595632.1|	-	0.027	13.7	0.0	0.07	12.3	0.0	1.7	1	0	0	1	1	1	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
PTS_EIIA_1	PF00358.20	gi|336252525|ref|YP_004595632.1|	-	0.05	13.4	0.3	6.2	6.6	0.0	2.5	1	1	1	2	2	2	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
Transket_pyr	PF02779.24	gi|336252526|ref|YP_004595633.1|	-	1.1e-52	178.3	0.0	1.4e-52	177.9	0.0	1.1	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|336252526|ref|YP_004595633.1|	-	2e-35	121.4	0.0	3.5e-35	120.6	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
E1_dh	PF00676.20	gi|336252527|ref|YP_004595634.1|	-	4e-88	295.2	0.0	4.7e-88	295.0	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|336252527|ref|YP_004595634.1|	-	2.2e-07	30.4	0.0	3.2e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|336252527|ref|YP_004595634.1|	-	0.00043	20.1	0.3	0.0015	18.3	0.1	2.0	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
HTH_41	PF14502.6	gi|336252527|ref|YP_004595634.1|	-	0.014	15.1	0.0	0.032	13.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Band_7	PF01145.25	gi|336252528|ref|YP_004595635.1|	-	0.00018	21.6	0.0	0.0002	21.4	0.0	1.1	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Radical_SAM	PF04055.21	gi|336252529|ref|YP_004595636.1|	-	1.5e-13	51.5	0.3	4.2e-13	50.0	0.2	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
LIAS_N	PF16881.5	gi|336252529|ref|YP_004595636.1|	-	2.3e-10	40.8	0.0	5e-10	39.8	0.0	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	lipoyl	synthase	of	Radical_SAM	family
B12-binding	PF02310.19	gi|336252529|ref|YP_004595636.1|	-	0.013	15.5	0.1	3.9	7.5	0.0	3.0	1	1	2	3	3	3	0	B12	binding	domain
MatE	PF01554.18	gi|336252530|ref|YP_004595637.1|	-	1.6e-47	161.2	25.5	6.9e-27	94.1	10.0	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|336252530|ref|YP_004595637.1|	-	1.2e-08	35.2	3.2	1.2e-08	35.2	3.2	4.5	4	1	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Methyltransf_11	PF08241.12	gi|336252531|ref|YP_004595638.1|	-	5.7e-28	97.4	0.0	9e-28	96.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252531|ref|YP_004595638.1|	-	7.1e-25	87.6	0.0	1.1e-24	86.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336252531|ref|YP_004595638.1|	-	1.1e-23	83.7	0.0	1.5e-23	83.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336252531|ref|YP_004595638.1|	-	8.1e-22	77.8	0.0	1.1e-21	77.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336252531|ref|YP_004595638.1|	-	7.2e-19	68.0	0.0	1.1e-18	67.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336252531|ref|YP_004595638.1|	-	4.7e-16	59.4	0.0	7.1e-16	58.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.16	gi|336252531|ref|YP_004595638.1|	-	1.3e-05	24.0	0.0	1.5e-05	23.8	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.14	gi|336252531|ref|YP_004595638.1|	-	1.7e-05	24.4	0.0	3.7e-05	23.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|336252531|ref|YP_004595638.1|	-	4.9e-05	22.9	0.0	6.4e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|336252531|ref|YP_004595638.1|	-	6e-05	22.9	0.0	9.9e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_9	PF08003.11	gi|336252531|ref|YP_004595638.1|	-	9e-05	21.5	0.0	0.0001	21.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TehB	PF03848.14	gi|336252531|ref|YP_004595638.1|	-	0.00029	20.3	0.0	0.00041	19.8	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_32	PF13679.6	gi|336252531|ref|YP_004595638.1|	-	0.00037	20.5	0.0	0.00049	20.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
GidB	PF02527.15	gi|336252531|ref|YP_004595638.1|	-	0.001	18.5	0.0	0.0019	17.5	0.0	1.4	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
NodS	PF05401.11	gi|336252531|ref|YP_004595638.1|	-	0.0013	18.4	0.0	0.0017	18.0	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
TPMT	PF05724.11	gi|336252531|ref|YP_004595638.1|	-	0.0016	18.2	0.0	0.0022	17.7	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
MetW	PF07021.12	gi|336252531|ref|YP_004595638.1|	-	0.0027	17.3	0.0	0.0045	16.6	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
UPF0020	PF01170.18	gi|336252531|ref|YP_004595638.1|	-	0.0055	16.4	0.0	0.01	15.5	0.0	1.5	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_2	PF00891.18	gi|336252531|ref|YP_004595638.1|	-	0.0095	15.2	0.0	0.014	14.7	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_18	PF12847.7	gi|336252531|ref|YP_004595638.1|	-	0.024	14.6	0.0	0.038	13.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|336252531|ref|YP_004595638.1|	-	0.027	14.2	0.0	0.039	13.7	0.0	1.2	1	0	0	1	1	1	0	Lysine	methyltransferase
DREV	PF05219.12	gi|336252531|ref|YP_004595638.1|	-	0.033	13.3	0.0	0.064	12.3	0.0	1.5	1	1	0	1	1	1	0	DREV	methyltransferase
CMAS	PF02353.20	gi|336252531|ref|YP_004595638.1|	-	0.048	13.0	0.0	0.062	12.6	0.0	1.3	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
AdoMet_MTase	PF07757.13	gi|336252531|ref|YP_004595638.1|	-	0.14	12.5	0.0	0.24	11.7	0.0	1.4	1	0	0	1	1	1	0	Predicted	AdoMet-dependent	methyltransferase
Mur_ligase	PF01225.25	gi|336252531|ref|YP_004595638.1|	-	0.14	12.5	0.0	0.29	11.5	0.0	1.6	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
Methyltransf_15	PF09445.10	gi|336252531|ref|YP_004595638.1|	-	0.17	11.5	0.0	0.21	11.2	0.0	1.1	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
bPH_2	PF03703.14	gi|336252532|ref|YP_004595639.1|	-	1.3e-16	60.6	0.0	2.5e-16	59.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
DEAD	PF00270.29	gi|336252533|ref|YP_004595640.1|	-	6.4e-25	87.9	0.0	2.2e-24	86.2	0.0	1.9	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Sec63	PF02889.16	gi|336252533|ref|YP_004595640.1|	-	1e-14	54.3	0.0	1.4e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	Sec63	Brl	domain
ResIII	PF04851.15	gi|336252533|ref|YP_004595640.1|	-	1.7e-11	44.4	0.0	2.8e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|336252533|ref|YP_004595640.1|	-	5.3e-09	36.4	0.0	2.2e-08	34.4	0.0	2.1	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|336252533|ref|YP_004595640.1|	-	6.7e-05	23.4	2.1	0.0001	22.9	0.7	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
UTP25	PF06862.12	gi|336252533|ref|YP_004595640.1|	-	0.12	11.2	0.0	0.17	10.6	0.0	1.1	1	0	0	1	1	1	0	Utp25,	U3	small	nucleolar	RNA-associated	SSU	processome	protein	25
HAD_2	PF13419.6	gi|336252534|ref|YP_004595641.1|	-	5.7e-30	104.7	0.0	6.8e-30	104.5	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252534|ref|YP_004595641.1|	-	1.8e-17	64.4	0.3	8.5e-17	62.1	0.3	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336252534|ref|YP_004595641.1|	-	7.7e-10	39.5	0.5	8.9e-10	39.3	0.5	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252534|ref|YP_004595641.1|	-	1.7e-09	37.6	0.2	7.6e-09	35.5	0.1	2.1	2	0	0	2	2	2	1	HAD-hyrolase-like
Ufm1	PF03671.14	gi|336252534|ref|YP_004595641.1|	-	0.17	12.0	0.0	0.37	10.9	0.0	1.5	1	0	0	1	1	1	0	Ubiquitin	fold	modifier	1	protein
Methyltransf_11	PF08241.12	gi|336252535|ref|YP_004595642.1|	-	1e-09	38.9	0.1	1.6e-09	38.3	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252535|ref|YP_004595642.1|	-	1.5e-09	38.4	0.1	2.7e-09	37.6	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336252535|ref|YP_004595642.1|	-	2.4e-08	34.0	0.0	3.4e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|336252535|ref|YP_004595642.1|	-	1.5e-05	24.7	0.0	2.9e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|336252535|ref|YP_004595642.1|	-	0.0001	23.0	0.1	0.00025	21.7	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|336252535|ref|YP_004595642.1|	-	0.00016	20.8	0.0	0.0002	20.4	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_31	PF13847.6	gi|336252535|ref|YP_004595642.1|	-	0.00025	20.9	0.1	0.00033	20.5	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|336252535|ref|YP_004595642.1|	-	0.0033	16.9	0.0	0.084	12.3	0.0	2.1	2	0	0	2	2	2	1	Tellurite	resistance	protein	TehB
DUF123	PF01986.16	gi|336252535|ref|YP_004595642.1|	-	0.039	14.5	1.2	0.16	12.5	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF123
AF-4	PF05110.13	gi|336252535|ref|YP_004595642.1|	-	7.2	4.5	7.2	9.2	4.2	7.2	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
CSD	PF00313.22	gi|336252536|ref|YP_004595643.1|	-	1.1e-19	70.1	0.2	1.2e-19	69.9	0.2	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|336252536|ref|YP_004595643.1|	-	0.037	13.7	2.4	0.05	13.3	2.4	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
Peptidase_M10_C	PF08548.11	gi|336252536|ref|YP_004595643.1|	-	0.089	12.7	0.7	0.092	12.6	0.7	1.1	1	0	0	1	1	1	0	Peptidase	M10	serralysin	C	terminal
DJ-1_PfpI	PF01965.24	gi|336252537|ref|YP_004595644.1|	-	2.2e-28	99.2	0.5	2.6e-28	98.9	0.5	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|336252537|ref|YP_004595644.1|	-	0.00037	20.1	0.0	0.016	14.8	0.0	2.1	1	1	1	2	2	2	2	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF2749	PF10907.8	gi|336252538|ref|YP_004595645.1|	-	0.018	15.2	0.3	0.046	13.9	0.3	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2749)
BUD22	PF09073.10	gi|336252538|ref|YP_004595645.1|	-	0.6	9.4	18.0	0.79	9.0	18.0	1.2	1	0	0	1	1	1	0	BUD22
DUF4148	PF13663.6	gi|336252538|ref|YP_004595645.1|	-	7.4	6.8	7.4	0.28	11.4	1.4	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4148)
DUF4897	PF16238.5	gi|336252539|ref|YP_004595646.1|	-	0.0068	16.3	0.0	0.01	15.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4897)
HTH_27	PF13463.6	gi|336252539|ref|YP_004595646.1|	-	0.02	15.4	0.0	0.046	14.2	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_39	PF14090.6	gi|336252539|ref|YP_004595646.1|	-	0.098	12.4	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
CdvA	PF18822.1	gi|336252540|ref|YP_004595647.1|	-	2.3e-07	30.7	2.0	3.8e-07	30.0	1.6	1.6	1	1	0	1	1	1	1	CdvA-like	coiled-coil	domain
AAA_13	PF13166.6	gi|336252540|ref|YP_004595647.1|	-	0.006	15.3	1.3	0.0075	15.0	1.3	1.0	1	0	0	1	1	1	1	AAA	domain
Fmp27_WPPW	PF10359.9	gi|336252540|ref|YP_004595647.1|	-	0.028	13.3	0.4	0.034	13.0	0.4	1.0	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF724	PF05266.14	gi|336252540|ref|YP_004595647.1|	-	0.032	14.1	0.7	0.042	13.7	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF3450	PF11932.8	gi|336252540|ref|YP_004595647.1|	-	0.037	13.3	1.7	0.059	12.7	1.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
DUF2802	PF10975.8	gi|336252540|ref|YP_004595647.1|	-	0.063	13.4	0.6	0.69	10.1	0.1	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2802)
ABC_tran_CTD	PF16326.5	gi|336252540|ref|YP_004595647.1|	-	0.16	12.2	5.8	0.69	10.2	5.1	2.1	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
SlyX	PF04102.12	gi|336252540|ref|YP_004595647.1|	-	0.58	10.8	3.4	5.5	7.7	2.5	2.7	1	1	1	2	2	2	0	SlyX
FUSC	PF04632.12	gi|336252540|ref|YP_004595647.1|	-	1.1	7.7	7.2	1.3	7.4	7.2	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
MazG	PF03819.17	gi|336252541|ref|YP_004595648.1|	-	1.5e-07	31.4	0.3	2.3e-07	30.9	0.3	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
MazG-like	PF12643.7	gi|336252541|ref|YP_004595648.1|	-	0.0037	17.5	0.1	0.0045	17.2	0.1	1.3	1	0	0	1	1	1	1	MazG-like	family
Hemerythrin	PF01814.23	gi|336252541|ref|YP_004595648.1|	-	0.07	13.8	0.7	0.11	13.1	0.6	1.4	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
HD	PF01966.22	gi|336252542|ref|YP_004595649.1|	-	1.3e-10	41.6	3.8	3.4e-10	40.2	3.8	1.8	1	1	0	1	1	1	1	HD	domain
Clp_N	PF02861.20	gi|336252542|ref|YP_004595649.1|	-	0.0043	17.1	0.1	0.016	15.3	0.1	2.0	1	0	0	1	1	1	1	Clp	amino	terminal	domain,	pathogenicity	island	component
AAA_33	PF13671.6	gi|336252543|ref|YP_004595650.1|	-	3.6e-20	72.6	0.0	4.5e-20	72.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|336252543|ref|YP_004595650.1|	-	4.4e-06	26.1	0.1	7.1e-06	25.4	0.1	1.4	1	1	0	1	1	1	1	Zeta	toxin
KTI12	PF08433.10	gi|336252543|ref|YP_004595650.1|	-	0.00077	19.0	0.0	0.00086	18.8	0.0	1.1	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_17	PF13207.6	gi|336252543|ref|YP_004595650.1|	-	0.0026	18.2	0.1	0.0077	16.7	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
6PF2K	PF01591.18	gi|336252543|ref|YP_004595650.1|	-	0.0079	15.5	0.9	0.64	9.3	0.9	2.4	1	1	0	1	1	1	1	6-phosphofructo-2-kinase
AAA_22	PF13401.6	gi|336252543|ref|YP_004595650.1|	-	0.01	16.1	0.0	0.026	14.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|336252543|ref|YP_004595650.1|	-	0.035	14.7	0.1	0.34	11.5	0.1	2.5	1	1	1	2	2	2	0	AAA	domain
DUF3275	PF11679.8	gi|336252543|ref|YP_004595650.1|	-	0.051	13.6	0.1	0.072	13.1	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3275)
CPT	PF07931.12	gi|336252543|ref|YP_004595650.1|	-	0.072	12.9	0.0	0.091	12.6	0.0	1.2	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
Phosphonate-bd	PF12974.7	gi|336252544|ref|YP_004595651.1|	-	2.8e-49	167.9	0.1	3.4e-49	167.7	0.1	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
PTN13_u3	PF16599.5	gi|336252544|ref|YP_004595651.1|	-	0.033	14.3	1.8	0.054	13.5	1.8	1.2	1	0	0	1	1	1	0	Unstructured	linker	region	on	PTN13	protein	between	PDZ
DUF4177	PF13783.6	gi|336252544|ref|YP_004595651.1|	-	0.12	12.7	0.0	1.1	9.6	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4177)
ABC_tran	PF00005.27	gi|336252545|ref|YP_004595652.1|	-	9e-33	113.7	0.1	1.2e-32	113.2	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252545|ref|YP_004595652.1|	-	1.3e-06	28.5	0.0	0.018	14.9	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|336252545|ref|YP_004595652.1|	-	1.2e-05	25.8	0.1	1.7e-05	25.2	0.1	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|336252545|ref|YP_004595652.1|	-	5.8e-05	22.6	0.1	0.0029	17.1	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|336252545|ref|YP_004595652.1|	-	9.6e-05	22.3	0.0	0.00025	21.0	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_30	PF13604.6	gi|336252545|ref|YP_004595652.1|	-	0.00071	19.3	1.2	0.0016	18.2	1.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336252545|ref|YP_004595652.1|	-	0.00097	18.8	0.0	0.0019	17.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|336252545|ref|YP_004595652.1|	-	0.0052	16.8	0.1	0.02	15.0	0.1	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|336252545|ref|YP_004595652.1|	-	0.0062	16.1	0.0	0.015	14.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|336252545|ref|YP_004595652.1|	-	0.026	14.5	0.3	0.14	12.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.17	gi|336252545|ref|YP_004595652.1|	-	0.028	14.2	0.0	0.18	11.5	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|336252545|ref|YP_004595652.1|	-	0.04	14.5	0.0	0.067	13.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|336252545|ref|YP_004595652.1|	-	0.066	13.5	0.2	0.16	12.3	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336252545|ref|YP_004595652.1|	-	0.069	13.3	0.1	0.096	12.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|336252545|ref|YP_004595652.1|	-	0.07	12.7	0.1	0.16	11.5	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|336252545|ref|YP_004595652.1|	-	0.086	13.3	0.0	0.15	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|336252545|ref|YP_004595652.1|	-	0.096	12.9	0.5	1.5	9.1	0.5	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.6	gi|336252545|ref|YP_004595652.1|	-	0.15	10.7	0.0	6.3	5.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|336252545|ref|YP_004595652.1|	-	0.24	11.1	0.0	14	5.3	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
MMPL	PF03176.15	gi|336252546|ref|YP_004595653.1|	-	0.0018	17.3	0.5	0.003	16.6	0.5	1.4	1	0	0	1	1	1	1	MMPL	family
NucS	PF01939.16	gi|336252547|ref|YP_004595654.1|	-	4.5e-06	26.2	0.0	6.2e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Endonuclease	NucS
zf-C4_Topoisom	PF01396.19	gi|336252547|ref|YP_004595654.1|	-	0.00026	20.7	4.5	0.035	13.9	0.4	2.6	2	0	0	2	2	2	2	Topoisomerase	DNA	binding	C4	zinc	finger
Auto_anti-p27	PF06677.12	gi|336252547|ref|YP_004595654.1|	-	0.15	12.2	15.2	0.18	12.0	1.6	3.8	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc_ribbon_4	PF13717.6	gi|336252547|ref|YP_004595654.1|	-	0.82	9.6	3.3	1.2	9.2	0.3	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
tRNA_int_endo	PF01974.17	gi|336252548|ref|YP_004595655.1|	-	9.8e-32	108.9	0.4	2e-26	91.9	0.1	3.7	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|336252548|ref|YP_004595655.1|	-	8.1e-24	83.1	0.2	7.6e-11	41.5	0.0	2.7	3	0	0	3	3	3	2	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_end_N2	PF12928.7	gi|336252548|ref|YP_004595655.1|	-	0.0055	16.9	0.1	3.1	8.0	0.1	2.5	2	0	0	2	2	2	2	tRNA-splicing	endonuclease	subunit	sen54	N-term
TPR_9	PF13371.6	gi|336252548|ref|YP_004595655.1|	-	0.13	12.5	1.5	0.3	11.3	0.1	2.4	3	0	0	3	3	3	0	Tetratricopeptide	repeat
Tubulin	PF00091.25	gi|336252549|ref|YP_004595656.1|	-	8e-13	49.0	0.0	1.7e-09	38.1	0.0	2.3	2	0	0	2	2	2	2	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|336252549|ref|YP_004595656.1|	-	0.0035	16.6	0.2	2.4	7.3	0.0	2.2	1	1	0	2	2	2	2	Tubulin	like
DUF4129	PF13559.6	gi|336252550|ref|YP_004595657.1|	-	0.00014	22.1	4.1	0.00014	22.1	4.1	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4129)
DUF4198	PF10670.9	gi|336252550|ref|YP_004595657.1|	-	0.00046	20.6	7.6	0.25	11.7	0.3	3.4	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4198)
CarbopepD_reg_2	PF13715.6	gi|336252550|ref|YP_004595657.1|	-	0.0029	17.6	7.9	0.47	10.5	0.6	3.6	3	0	0	3	3	3	2	CarboxypepD_reg-like	domain
DUF58	PF01882.18	gi|336252552|ref|YP_004595659.1|	-	1.8e-15	57.0	0.0	4.2e-15	55.8	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|336252552|ref|YP_004595659.1|	-	1.1e-07	32.0	0.0	3.6e-07	30.4	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|336252552|ref|YP_004595659.1|	-	0.017	15.3	0.4	0.048	13.9	0.1	2.0	2	0	0	2	2	2	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
AAA_3	PF07726.11	gi|336252554|ref|YP_004595661.1|	-	1.9e-64	215.4	0.2	3e-64	214.7	0.2	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|336252554|ref|YP_004595661.1|	-	2.4e-19	68.9	2.7	6e-19	67.7	2.7	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|336252554|ref|YP_004595661.1|	-	2.6e-16	59.9	0.0	5.9e-16	58.7	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|336252554|ref|YP_004595661.1|	-	8.5e-07	29.5	0.0	2.1e-06	28.2	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|336252554|ref|YP_004595661.1|	-	2.5e-06	27.3	0.0	1.5e-05	24.8	0.0	2.0	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|336252554|ref|YP_004595661.1|	-	0.0014	18.4	0.0	0.019	14.7	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|336252554|ref|YP_004595661.1|	-	0.019	14.1	0.0	0.025	13.7	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|336252554|ref|YP_004595661.1|	-	0.02	14.3	0.1	2.2	7.6	0.0	2.3	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_2	PF07724.14	gi|336252554|ref|YP_004595661.1|	-	0.04	14.0	0.0	0.073	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
tRNA-synt_1b	PF00579.25	gi|336252555|ref|YP_004595662.1|	-	4.3e-44	151.0	0.0	2.1e-26	92.9	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
Phage_connect_1	PF05135.13	gi|336252556|ref|YP_004595663.1|	-	0.076	13.5	0.2	0.33	11.5	0.2	2.1	2	0	0	2	2	2	0	Phage	gp6-like	head-tail	connector	protein
LPP20	PF02169.16	gi|336252556|ref|YP_004595663.1|	-	1.6	9.1	7.3	0.62	10.4	0.6	3.0	3	0	0	3	3	3	0	LPP20	lipoprotein
tRNA-synt_2d	PF01409.20	gi|336252557|ref|YP_004595664.1|	-	2.3e-80	269.6	0.0	2.9e-80	269.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
DprA_WH	PF17782.1	gi|336252557|ref|YP_004595664.1|	-	8.3e-05	22.6	2.4	8.3e-05	22.6	2.4	4.1	4	0	0	4	4	4	1	DprA	winged	helix	domain
HTH_24	PF13412.6	gi|336252557|ref|YP_004595664.1|	-	0.0008	18.9	0.0	0.0031	17.1	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
tRNA_synthFbeta	PF17759.1	gi|336252557|ref|YP_004595664.1|	-	0.0033	16.9	0.1	0.15	11.5	0.0	2.5	2	0	0	2	2	2	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
tRNA-synt_2	PF00152.20	gi|336252557|ref|YP_004595664.1|	-	0.0054	15.9	0.2	0.61	9.1	0.1	2.5	2	0	0	2	2	2	1	tRNA	synthetases	class	II	(D,	K	and	N)
MarR_2	PF12802.7	gi|336252557|ref|YP_004595664.1|	-	0.008	16.1	0.3	0.027	14.3	0.1	2.0	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|336252557|ref|YP_004595664.1|	-	0.0082	16.0	0.0	0.02	14.8	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|336252557|ref|YP_004595664.1|	-	0.025	14.4	0.0	0.07	13.0	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
LPD22	PF18834.1	gi|336252557|ref|YP_004595664.1|	-	0.027	14.7	3.4	1.7	8.9	0.3	2.4	2	0	0	2	2	2	0	Large	polyvalent	protein	associated	domain	22
TrmB	PF01978.19	gi|336252557|ref|YP_004595664.1|	-	0.033	14.1	0.1	0.97	9.4	0.0	2.8	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|336252557|ref|YP_004595664.1|	-	0.13	12.6	0.0	0.32	11.4	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
tRNA_synthFbeta	PF17759.1	gi|336252558|ref|YP_004595665.1|	-	4e-42	144.1	0.0	5.5e-42	143.6	0.0	1.2	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|336252558|ref|YP_004595665.1|	-	1.4e-16	60.6	1.1	6.8e-16	58.3	0.7	2.4	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|336252558|ref|YP_004595665.1|	-	3.4e-13	49.7	0.0	5.5e-13	49.0	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|336252558|ref|YP_004595665.1|	-	2.1e-06	27.8	2.2	0.0011	19.1	0.1	3.6	3	1	0	3	3	3	2	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|336252558|ref|YP_004595665.1|	-	3.4e-06	26.7	0.0	5.4e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
SymE_toxin	PF08845.10	gi|336252559|ref|YP_004595666.1|	-	0.0012	18.9	0.0	0.0012	18.8	0.0	1.1	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
MazE_antitoxin	PF04014.18	gi|336252559|ref|YP_004595666.1|	-	0.013	15.4	0.4	0.02	14.8	0.4	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
MC1	PF05854.11	gi|336252560|ref|YP_004595667.1|	-	4.7e-48	161.4	0.3	5.6e-48	161.2	0.3	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
MFS_1	PF07690.16	gi|336252562|ref|YP_004595669.1|	-	8.3e-32	110.5	41.0	8.3e-32	110.5	41.0	1.4	2	0	0	2	2	2	1	Major	Facilitator	Superfamily
Bac_rhodopsin	PF01036.18	gi|336252563|ref|YP_004595670.1|	-	1.8e-25	89.9	23.9	2.1e-25	89.6	23.9	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
GRA6	PF05084.13	gi|336252563|ref|YP_004595670.1|	-	0.46	10.4	2.2	1.1	9.1	0.1	2.1	2	0	0	2	2	2	0	Granule	antigen	protein	(GRA6)
Cytochrom_B_C	PF00032.17	gi|336252563|ref|YP_004595670.1|	-	0.99	9.7	6.3	0.82	10.0	0.9	2.6	1	1	1	2	2	2	0	Cytochrome	b(C-terminal)/b6/petD
PetG	PF02529.15	gi|336252563|ref|YP_004595670.1|	-	1.8	8.5	9.7	0.5	10.3	2.4	3.0	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	subunit	5
MCPsignal	PF00015.21	gi|336252564|ref|YP_004595671.1|	-	1.2e-37	129.4	25.6	1.2e-37	129.4	25.6	5.0	1	1	4	5	5	5	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|336252564|ref|YP_004595671.1|	-	3e-16	59.5	13.4	3.4e-09	36.9	0.2	5.7	4	1	0	4	4	4	2	HAMP	domain
DUF1664	PF07889.12	gi|336252564|ref|YP_004595671.1|	-	3.9e-06	26.9	35.9	0.0073	16.3	1.1	5.5	1	1	3	5	5	5	2	Protein	of	unknown	function	(DUF1664)
DUF3450	PF11932.8	gi|336252564|ref|YP_004595671.1|	-	0.00016	21.0	48.9	0.039	13.2	0.8	5.0	1	1	4	5	5	5	3	Protein	of	unknown	function	(DUF3450)
GAS	PF13851.6	gi|336252564|ref|YP_004595671.1|	-	0.0023	17.3	21.4	0.26	10.6	0.3	3.4	3	0	0	3	3	3	3	Growth-arrest	specific	micro-tubule	binding
DUF948	PF06103.11	gi|336252564|ref|YP_004595671.1|	-	0.0037	17.5	47.0	0.083	13.2	3.0	7.4	1	1	7	8	8	8	5	Bacterial	protein	of	unknown	function	(DUF948)
TMF_TATA_bd	PF12325.8	gi|336252564|ref|YP_004595671.1|	-	0.0055	16.9	35.6	0.034	14.4	0.8	5.0	3	2	1	4	4	4	1	TATA	element	modulatory	factor	1	TATA	binding
BLOC1_2	PF10046.9	gi|336252564|ref|YP_004595671.1|	-	0.0056	16.9	28.4	0.4	11.0	1.9	6.2	3	2	1	5	5	5	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Laminin_II	PF06009.12	gi|336252564|ref|YP_004595671.1|	-	0.0061	16.6	45.7	0.38	10.8	1.5	5.2	2	2	3	6	6	6	4	Laminin	Domain	II
RPW8	PF05659.11	gi|336252564|ref|YP_004595671.1|	-	0.0092	15.7	11.6	1.3	8.7	0.1	5.0	4	1	1	5	5	5	1	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Spc7	PF08317.11	gi|336252564|ref|YP_004595671.1|	-	0.0093	14.9	45.0	0.6	8.9	9.3	3.5	1	1	2	3	3	3	2	Spc7	kinetochore	protein
I_LWEQ	PF01608.17	gi|336252564|ref|YP_004595671.1|	-	0.01	16.1	3.2	0.01	16.1	3.2	4.6	1	1	2	4	4	4	0	I/LWEQ	domain
ATG16	PF08614.11	gi|336252564|ref|YP_004595671.1|	-	0.011	15.9	3.5	0.011	15.9	3.5	4.2	1	1	3	4	4	4	0	Autophagy	protein	16	(ATG16)
RmuC	PF02646.16	gi|336252564|ref|YP_004595671.1|	-	0.013	14.6	27.9	1.6	7.8	0.6	5.7	2	1	5	7	7	7	0	RmuC	family
DUF4201	PF13870.6	gi|336252564|ref|YP_004595671.1|	-	0.017	14.9	9.5	0.028	14.1	3.4	3.2	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4201)
Fib_alpha	PF08702.10	gi|336252564|ref|YP_004595671.1|	-	0.024	14.8	22.6	0.54	10.4	2.1	4.7	3	2	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
CENP-Q	PF13094.6	gi|336252564|ref|YP_004595671.1|	-	0.053	13.7	30.7	0.046	13.9	10.5	3.2	2	1	1	3	3	3	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF2203	PF09969.9	gi|336252564|ref|YP_004595671.1|	-	0.12	13.1	36.5	1.4	9.7	0.8	5.3	1	1	4	6	6	6	0	Uncharacterized	conserved	protein	(DUF2203)
Sec34	PF04136.15	gi|336252564|ref|YP_004595671.1|	-	0.12	12.2	25.5	2	8.3	2.3	5.6	3	2	3	6	6	6	0	Sec34-like	family
Rota_NSP4	PF01452.16	gi|336252564|ref|YP_004595671.1|	-	0.14	11.8	3.1	4.1	7.0	0.2	2.6	2	0	0	2	2	2	0	Rotavirus	non	structural	protein
DCB	PF16213.5	gi|336252564|ref|YP_004595671.1|	-	0.16	11.6	0.1	0.16	11.6	0.1	3.4	4	1	0	4	4	4	0	Dimerisation	and	cyclophilin-binding	domain	of	Mon2
Hormone_1	PF00103.20	gi|336252564|ref|YP_004595671.1|	-	0.18	11.5	11.6	2.3	7.9	0.3	4.5	2	2	4	6	6	6	0	Somatotropin	hormone	family
EzrA	PF06160.12	gi|336252564|ref|YP_004595671.1|	-	0.22	9.7	32.4	0.16	10.1	1.2	2.8	1	1	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
MscS_porin	PF12795.7	gi|336252564|ref|YP_004595671.1|	-	0.27	10.7	43.3	0.41	10.2	11.5	3.4	3	0	0	3	3	3	0	Mechanosensitive	ion	channel	porin	domain
Syntaxin_2	PF14523.6	gi|336252564|ref|YP_004595671.1|	-	0.34	11.3	19.0	0.55	10.6	0.4	5.2	3	2	2	5	5	5	0	Syntaxin-like	protein
DUF5082	PF16888.5	gi|336252564|ref|YP_004595671.1|	-	0.41	10.9	28.1	0.19	12.0	2.5	4.2	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF5082)
TPR_MLP1_2	PF07926.12	gi|336252564|ref|YP_004595671.1|	-	0.73	9.9	46.7	0.021	14.9	8.7	4.4	3	2	1	4	4	4	0	TPR/MLP1/MLP2-like	protein
DASH_Duo1	PF08651.10	gi|336252564|ref|YP_004595671.1|	-	1.1	9.0	17.9	2.1	8.2	0.2	6.5	5	2	2	7	7	7	0	DASH	complex	subunit	Duo1
AAA_13	PF13166.6	gi|336252564|ref|YP_004595671.1|	-	1.1	7.8	37.5	54	2.2	23.4	2.9	1	1	1	2	2	2	0	AAA	domain
BST2	PF16716.5	gi|336252564|ref|YP_004595671.1|	-	1.2	9.8	26.7	0.56	10.8	0.1	5.0	3	2	2	5	5	4	0	Bone	marrow	stromal	antigen	2
COG6	PF06419.11	gi|336252564|ref|YP_004595671.1|	-	1.5	6.9	23.7	0.17	10.0	2.7	4.1	2	1	1	4	4	4	0	Conserved	oligomeric	complex	COG6
ERM	PF00769.19	gi|336252564|ref|YP_004595671.1|	-	1.7	8.4	56.5	0.044	13.6	21.3	3.6	2	1	0	3	3	3	0	Ezrin/radixin/moesin	family
Fez1	PF06818.15	gi|336252564|ref|YP_004595671.1|	-	1.7	9.0	36.6	0.55	10.6	1.1	3.2	2	1	1	3	3	3	0	Fez1
LMBR1	PF04791.16	gi|336252564|ref|YP_004595671.1|	-	1.8	7.4	16.1	92	1.7	16.1	2.8	1	1	0	1	1	1	0	LMBR1-like	membrane	protein
Atg14	PF10186.9	gi|336252564|ref|YP_004595671.1|	-	2	7.5	17.8	1.1	8.3	2.8	3.6	3	1	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
CorA	PF01544.18	gi|336252564|ref|YP_004595671.1|	-	2.3	7.5	30.8	0.28	10.5	1.7	3.6	2	1	0	3	3	3	0	CorA-like	Mg2+	transporter	protein
Vip3A_N	PF12495.8	gi|336252564|ref|YP_004595671.1|	-	2.7	7.9	6.7	23	4.8	0.3	3.5	2	1	2	4	4	4	0	Vegetative	insecticide	protein	3A	N	terminal
SLX9	PF15341.6	gi|336252564|ref|YP_004595671.1|	-	2.8	8.3	18.3	1.5	9.2	13.9	2.7	2	1	0	2	2	2	0	Ribosome	biogenesis	protein	SLX9
Jnk-SapK_ap_N	PF09744.9	gi|336252564|ref|YP_004595671.1|	-	2.8	8.1	37.4	2.6	8.2	15.9	4.0	2	1	1	3	3	3	0	JNK_SAPK-associated	protein-1
Seryl_tRNA_N	PF02403.22	gi|336252564|ref|YP_004595671.1|	-	3.5	7.9	32.5	9.8	6.5	2.8	5.5	2	1	4	6	6	6	0	Seryl-tRNA	synthetase	N-terminal	domain
Mod_r	PF07200.13	gi|336252564|ref|YP_004595671.1|	-	3.7	7.7	34.8	1.2	9.2	9.9	4.0	1	1	3	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
TBCA	PF02970.16	gi|336252564|ref|YP_004595671.1|	-	4.1	7.8	30.5	0.047	14.0	7.8	4.5	4	1	1	5	5	4	0	Tubulin	binding	cofactor	A
DUF3584	PF12128.8	gi|336252564|ref|YP_004595671.1|	-	4.2	4.8	48.4	0.36	8.3	26.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Spectrin	PF00435.21	gi|336252564|ref|YP_004595671.1|	-	4.5	7.8	30.2	5.8	7.5	1.1	4.8	3	2	1	4	4	4	0	Spectrin	repeat
CENP-H	PF05837.12	gi|336252564|ref|YP_004595671.1|	-	5.2	7.5	37.9	2.7	8.4	1.4	5.0	3	2	2	5	5	5	0	Centromere	protein	H	(CENP-H)
Sec8_exocyst	PF04048.14	gi|336252564|ref|YP_004595671.1|	-	6.3	6.7	18.0	9.5	6.1	0.1	4.8	3	2	1	5	5	4	0	Sec8	exocyst	complex	component	specific	domain
Tweety	PF04906.13	gi|336252564|ref|YP_004595671.1|	-	6.4	5.3	11.7	3.2	6.3	0.7	3.3	2	1	0	3	3	3	0	Tweety
APG6_N	PF17675.1	gi|336252564|ref|YP_004595671.1|	-	6.6	7.3	54.4	1.5	9.4	19.1	4.7	2	2	1	4	4	4	0	Apg6	coiled-coil	region
Occludin_ELL	PF07303.13	gi|336252564|ref|YP_004595671.1|	-	6.9	7.5	9.5	27	5.5	1.7	4.6	3	2	1	4	4	3	0	Occludin	homology	domain
TMPIT	PF07851.13	gi|336252564|ref|YP_004595671.1|	-	7.4	5.7	22.7	5.7	6.1	0.4	4.0	1	1	2	4	4	4	0	TMPIT-like	protein
YabA	PF06156.13	gi|336252564|ref|YP_004595671.1|	-	7.6	7.2	21.7	30	5.3	4.3	5.2	2	2	2	4	4	4	0	Initiation	control	protein	YabA
ADIP	PF11559.8	gi|336252564|ref|YP_004595671.1|	-	8.6	6.4	31.7	1.3	9.1	10.7	4.1	3	1	1	4	4	4	0	Afadin-	and	alpha	-actinin-Binding
NPV_P10	PF05531.12	gi|336252564|ref|YP_004595671.1|	-	9.7	6.7	40.1	8.4	6.9	0.1	7.3	2	2	3	6	6	6	0	Nucleopolyhedrovirus	P10	protein
HATPase_c	PF02518.26	gi|336252565|ref|YP_004595672.1|	-	3.4e-16	59.7	0.0	6.4e-16	58.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336252565|ref|YP_004595672.1|	-	2.8e-13	49.7	3.4	3.8e-13	49.3	2.0	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|336252565|ref|YP_004595672.1|	-	1.2e-06	28.9	1.6	2.9e-05	24.4	0.0	3.1	3	1	0	3	3	3	1	GAF	domain
GAF_3	PF13492.6	gi|336252565|ref|YP_004595672.1|	-	1.3e-06	28.7	0.0	0.00041	20.7	0.0	2.7	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|336252565|ref|YP_004595672.1|	-	2.5e-06	28.1	0.0	1.4e-05	25.7	0.0	2.2	1	1	0	1	1	1	1	GAF	domain
HATPase_c_3	PF13589.6	gi|336252565|ref|YP_004595672.1|	-	0.063	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|336252565|ref|YP_004595672.1|	-	0.17	11.4	0.4	0.39	10.3	0.0	1.8	2	0	0	2	2	2	0	Archaeal	4TM	region	of	histidine	kinase
PDT	PF00800.18	gi|336252566|ref|YP_004595673.1|	-	1e-46	159.0	0.0	1.3e-46	158.7	0.0	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|336252566|ref|YP_004595673.1|	-	5.3e-06	26.1	0.0	1.7e-05	24.5	0.0	1.9	1	1	0	1	1	1	1	ACT	domain
CBS	PF00571.28	gi|336252567|ref|YP_004595674.1|	-	4.1e-24	84.8	3.4	1.5e-11	44.6	0.4	2.1	2	0	0	2	2	2	2	CBS	domain
AhpC-TSA	PF00578.21	gi|336252568|ref|YP_004595675.1|	-	2.9e-29	101.5	0.0	3.5e-29	101.3	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336252568|ref|YP_004595675.1|	-	5e-18	65.2	0.0	5.6e-18	65.1	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|336252568|ref|YP_004595675.1|	-	8.1e-06	25.9	0.0	1.4e-05	25.2	0.0	1.3	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|336252568|ref|YP_004595675.1|	-	0.0083	15.7	0.0	0.01	15.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
HSP20	PF00011.21	gi|336252569|ref|YP_004595676.1|	-	2.1e-18	66.4	0.0	2.6e-18	66.0	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|336252569|ref|YP_004595676.1|	-	2.7e-13	49.3	0.0	4.4e-13	48.6	0.0	1.4	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|336252569|ref|YP_004595676.1|	-	0.0031	17.6	0.8	0.0043	17.1	0.8	1.3	1	0	0	1	1	1	1	GvpH
CS	PF04969.16	gi|336252569|ref|YP_004595676.1|	-	0.16	13.0	0.0	0.21	12.6	0.0	1.2	1	0	0	1	1	1	0	CS	domain
PIH1_CS	PF18201.1	gi|336252569|ref|YP_004595676.1|	-	0.19	12.2	0.0	0.36	11.3	0.0	1.4	1	1	0	1	1	1	0	PIH1	CS-like	domain
LapA_dom	PF06305.11	gi|336252570|ref|YP_004595677.1|	-	0.26	11.1	0.1	0.26	11.1	0.1	2.4	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
tRNA-synt_1	PF00133.22	gi|336252571|ref|YP_004595678.1|	-	1.3e-72	244.9	3.5	3.5e-26	91.6	0.6	4.9	2	2	2	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|336252571|ref|YP_004595678.1|	-	9.5e-55	185.0	0.0	2e-54	183.9	0.0	1.5	2	0	0	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|336252571|ref|YP_004595678.1|	-	7.5e-40	136.9	1.4	1.9e-22	79.6	0.0	4.6	4	1	1	5	5	5	4	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|336252571|ref|YP_004595678.1|	-	4.8e-18	65.6	0.0	8.6e-18	64.7	0.0	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|336252571|ref|YP_004595678.1|	-	5.1e-09	35.9	0.1	1.9e-06	27.5	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|336252571|ref|YP_004595678.1|	-	1.1e-05	24.6	0.0	0.0015	17.6	0.0	2.7	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(K)
DZR	PF12773.7	gi|336252571|ref|YP_004595678.1|	-	0.0012	18.8	4.2	0.38	10.8	0.3	2.6	2	1	0	2	2	2	2	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336252571|ref|YP_004595678.1|	-	0.0089	15.4	5.9	2	8.0	0.1	4.0	4	0	0	4	4	4	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336252571|ref|YP_004595678.1|	-	0.11	12.6	7.9	3.4	7.9	4.8	3.3	2	1	0	2	2	2	0	Zinc	ribbon	domain
Phage-MuB_C	PF09077.11	gi|336252571|ref|YP_004595678.1|	-	0.17	11.8	0.2	0.44	10.5	0.1	1.7	2	0	0	2	2	1	0	Mu	B	transposition	protein,	C	terminal
tRNA-synt_1b	PF00579.25	gi|336252571|ref|YP_004595678.1|	-	0.18	11.1	0.1	0.53	9.6	0.0	1.8	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(W	and	Y)
DNA_ligase_ZBD	PF03119.16	gi|336252571|ref|YP_004595678.1|	-	0.5	10.4	7.1	0.91	9.6	0.0	3.6	3	1	1	4	4	4	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|336252571|ref|YP_004595678.1|	-	5	6.7	11.5	4.7	6.8	0.4	3.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
Na_Ca_ex	PF01699.24	gi|336252572|ref|YP_004595679.1|	-	6.3e-20	71.7	49.1	8e-18	64.8	14.5	2.4	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
GST_N_3	PF13417.6	gi|336252573|ref|YP_004595680.1|	-	3.2e-12	46.7	0.0	4.8e-12	46.1	0.0	1.3	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.6	gi|336252573|ref|YP_004595680.1|	-	7.2e-05	23.0	0.0	0.00012	22.3	0.0	1.4	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|336252573|ref|YP_004595680.1|	-	0.00039	20.6	0.0	0.00076	19.6	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin
CCG	PF02754.16	gi|336252574|ref|YP_004595681.1|	-	3.2e-16	59.3	0.0	6.2e-12	45.6	0.2	2.5	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4	PF00037.27	gi|336252574|ref|YP_004595681.1|	-	7.9e-10	38.1	12.4	1.9e-05	24.3	1.3	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|336252574|ref|YP_004595681.1|	-	1e-09	38.3	10.2	5.8e-08	32.7	10.6	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252574|ref|YP_004595681.1|	-	4.5e-09	36.6	5.6	4.5e-09	36.6	5.6	1.9	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336252574|ref|YP_004595681.1|	-	1.6e-08	34.6	8.7	1.9e-08	34.4	6.5	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252574|ref|YP_004595681.1|	-	6.5e-08	33.0	9.0	6.5e-08	33.0	9.0	2.0	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336252574|ref|YP_004595681.1|	-	1e-07	31.6	11.6	0.00019	21.3	1.7	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336252574|ref|YP_004595681.1|	-	5.4e-05	23.2	10.9	0.012	15.7	0.4	2.9	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336252574|ref|YP_004595681.1|	-	0.00025	21.0	23.2	0.00039	20.4	4.3	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336252574|ref|YP_004595681.1|	-	0.00028	21.7	13.3	0.0007	20.5	11.5	2.4	2	1	1	3	3	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|336252574|ref|YP_004595681.1|	-	0.00041	20.8	13.7	0.00045	20.7	10.9	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|336252574|ref|YP_004595681.1|	-	0.0005	20.9	4.3	0.049	14.5	0.2	2.9	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|336252574|ref|YP_004595681.1|	-	0.00078	19.8	18.1	0.004	17.5	0.8	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Acid_PPase	PF12689.7	gi|336252574|ref|YP_004595681.1|	-	0.052	13.4	0.0	0.092	12.6	0.0	1.3	1	0	0	1	1	1	0	Acid	Phosphatase
Fer4_18	PF13746.6	gi|336252574|ref|YP_004595681.1|	-	0.17	12.1	11.2	0.73	10.0	1.2	2.8	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
CopD	PF05425.13	gi|336252574|ref|YP_004595681.1|	-	0.41	11.0	3.1	1.7	9.1	0.8	2.4	2	0	0	2	2	2	0	Copper	resistance	protein	D
Fer4_15	PF13459.6	gi|336252574|ref|YP_004595681.1|	-	0.47	11.2	10.3	0.52	11.1	0.4	3.2	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|336252574|ref|YP_004595681.1|	-	0.5	10.9	17.5	0.45	11.1	1.5	3.2	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|336252574|ref|YP_004595681.1|	-	2.8	9.1	25.5	0.69	11.0	5.3	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
DUF1451	PF07295.11	gi|336252575|ref|YP_004595682.1|	-	0.028	14.4	1.2	0.028	14.4	1.2	2.3	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
HTH_Tnp_1	PF01527.20	gi|336252575|ref|YP_004595682.1|	-	0.03	14.7	0.3	0.1	12.9	0.1	2.0	2	0	0	2	2	2	0	Transposase
HTH_23	PF13384.6	gi|336252575|ref|YP_004595682.1|	-	0.073	12.9	0.1	4	7.4	0.0	2.5	2	0	0	2	2	2	0	Homeodomain-like	domain
ApoO	PF09769.9	gi|336252575|ref|YP_004595682.1|	-	0.29	11.1	1.1	1.2	9.1	0.1	2.1	2	0	0	2	2	2	0	Apolipoprotein	O
UPF0193	PF05250.11	gi|336252575|ref|YP_004595682.1|	-	0.42	10.4	6.1	0.057	13.2	2.1	1.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0193)
zf-C4H2	PF10146.9	gi|336252575|ref|YP_004595682.1|	-	2.7	8.2	7.5	2.4	8.4	5.8	1.8	1	1	0	1	1	1	0	Zinc	finger-containing	protein
PDDEXK_1	PF12705.7	gi|336252576|ref|YP_004595683.1|	-	5.4e-05	23.2	2.8	0.049	13.5	0.3	2.3	1	1	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|336252576|ref|YP_004595683.1|	-	0.0015	18.7	0.0	0.005	17.0	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
Exo5	PF09810.9	gi|336252576|ref|YP_004595683.1|	-	0.27	10.7	0.1	2.2	7.7	0.2	2.0	2	0	0	2	2	2	0	Exonuclease	V	-	a	5'	deoxyribonuclease
Abhydrolase_1	PF00561.20	gi|336252577|ref|YP_004595684.1|	-	2e-27	96.5	0.0	2.6e-27	96.1	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336252577|ref|YP_004595684.1|	-	0.01	15.1	0.0	0.018	14.3	0.0	1.3	1	0	0	1	1	1	0	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|336252577|ref|YP_004595684.1|	-	0.088	12.3	0.2	5.5	6.4	0.1	2.5	3	0	0	3	3	3	0	Prolyl	oligopeptidase	family
Cys_Met_Meta_PP	PF01053.20	gi|336252578|ref|YP_004595685.1|	-	3.7e-137	456.9	0.0	4.2e-137	456.7	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|336252578|ref|YP_004595685.1|	-	4.5e-08	32.8	0.8	6.6e-08	32.2	0.4	1.4	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|336252578|ref|YP_004595685.1|	-	4.7e-08	32.6	0.0	8e-08	31.8	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|336252578|ref|YP_004595685.1|	-	7.6e-05	21.8	0.0	0.00013	21.1	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|336252578|ref|YP_004595685.1|	-	0.00031	20.1	0.0	0.00055	19.3	0.0	1.5	1	1	0	1	1	1	1	Beta-eliminating	lyase
Sugarporin_N	PF11471.8	gi|336252578|ref|YP_004595685.1|	-	0.061	13.3	0.3	0.31	11.0	0.0	2.2	2	0	0	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
IGPD	PF00475.18	gi|336252580|ref|YP_004595687.1|	-	2.1e-60	203.2	1.2	3.2e-60	202.6	1.2	1.3	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
ClpS	PF02617.17	gi|336252580|ref|YP_004595687.1|	-	0.095	12.5	0.7	2.3	8.0	0.1	2.4	2	0	0	2	2	2	0	ATP-dependent	Clp	protease	adaptor	protein	ClpS
Lar_restr_allev	PF14354.6	gi|336252581|ref|YP_004595688.1|	-	0.025	14.9	0.0	0.053	13.9	0.0	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
SPX	PF03105.19	gi|336252581|ref|YP_004595688.1|	-	2.4	8.0	8.8	3.1	7.6	8.8	1.2	1	0	0	1	1	1	0	SPX	domain
ACT	PF01842.25	gi|336252582|ref|YP_004595689.1|	-	0.00038	20.2	0.6	0.0011	18.7	0.1	2.1	2	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.6	gi|336252582|ref|YP_004595689.1|	-	0.00057	19.6	0.1	0.0017	18.1	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
UPF0029	PF01205.19	gi|336252584|ref|YP_004595691.1|	-	3.1e-30	104.6	0.0	4e-30	104.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.11	gi|336252584|ref|YP_004595691.1|	-	9.2e-13	47.9	1.2	1.1e-12	47.6	0.1	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.24	gi|336252584|ref|YP_004595691.1|	-	0.0021	18.1	0.0	0.0038	17.2	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
bPH_6	PF10756.9	gi|336252585|ref|YP_004595692.1|	-	0.0085	16.2	0.2	0.0085	16.2	0.2	2.2	3	0	0	3	3	3	1	Bacterial	PH	domain
DctM	PF06808.12	gi|336252586|ref|YP_004595693.1|	-	4.4e-78	262.9	51.4	2.8e-54	184.5	26.6	2.6	2	0	0	2	2	2	2	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
DUF1850	PF08905.11	gi|336252587|ref|YP_004595694.1|	-	2.4e-23	82.3	0.0	3.6e-23	81.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1850)
VirB8	PF04335.13	gi|336252587|ref|YP_004595694.1|	-	0.16	11.8	0.7	0.23	11.2	0.7	1.2	1	0	0	1	1	1	0	VirB8	protein
NMT1_3	PF16868.5	gi|336252588|ref|YP_004595695.1|	-	2.1e-71	240.7	1.2	2.6e-71	240.4	1.2	1.0	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.11	gi|336252588|ref|YP_004595695.1|	-	3.8e-09	36.8	1.6	5.9e-08	32.9	0.1	2.2	2	0	0	2	2	2	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|336252588|ref|YP_004595695.1|	-	1.4e-08	34.6	2.8	2.6e-08	33.8	2.8	1.5	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.9	gi|336252588|ref|YP_004595695.1|	-	0.018	14.9	0.3	0.038	13.8	0.3	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peptidase_S9	PF00326.21	gi|336252589|ref|YP_004595696.1|	-	6.4e-57	192.5	0.2	9e-57	192.0	0.2	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
PD40	PF07676.12	gi|336252589|ref|YP_004595696.1|	-	3.5e-18	65.0	7.3	3.4e-08	33.2	0.1	5.2	5	0	0	5	5	5	3	WD40-like	Beta	Propeller	Repeat
Abhydrolase_1	PF00561.20	gi|336252589|ref|YP_004595696.1|	-	9.3e-08	32.0	0.1	1.7e-06	27.9	0.2	2.1	1	1	0	2	2	2	1	alpha/beta	hydrolase	fold
DLH	PF01738.18	gi|336252589|ref|YP_004595696.1|	-	3.8e-07	29.9	0.0	6.7e-07	29.1	0.0	1.3	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
AXE1	PF05448.12	gi|336252589|ref|YP_004595696.1|	-	4e-07	29.0	0.4	0.0045	15.7	0.0	2.2	1	1	1	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Hydrolase_4	PF12146.8	gi|336252589|ref|YP_004595696.1|	-	1.8e-05	24.2	0.9	0.032	13.5	0.3	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DPPIV_N	PF00930.21	gi|336252589|ref|YP_004595696.1|	-	0.002	16.9	0.0	0.41	9.4	0.0	3.5	2	1	2	4	4	4	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_4	PF08386.10	gi|336252589|ref|YP_004595696.1|	-	0.11	12.7	0.0	0.36	11.0	0.0	1.8	2	0	0	2	2	2	0	TAP-like	protein
Peptidase_S28	PF05577.12	gi|336252589|ref|YP_004595696.1|	-	0.26	10.0	0.0	0.39	9.5	0.0	1.1	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
BAAT_C	PF08840.11	gi|336252589|ref|YP_004595696.1|	-	0.27	11.1	0.0	6.6	6.6	0.0	2.1	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF2892	PF11127.8	gi|336252590|ref|YP_004595697.1|	-	7.9e-15	54.6	0.4	8.5e-15	54.6	0.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
UxuA	PF03786.13	gi|336252591|ref|YP_004595698.1|	-	4.8e-77	259.2	0.3	1e-59	202.2	0.1	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.24	gi|336252591|ref|YP_004595698.1|	-	2.8e-21	76.0	0.2	3.6e-21	75.6	0.2	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Cupin_2	PF07883.11	gi|336252592|ref|YP_004595699.1|	-	3.8e-11	42.5	0.1	6.3e-11	41.8	0.1	1.4	1	0	0	1	1	1	1	Cupin	domain
MannoseP_isomer	PF01050.18	gi|336252592|ref|YP_004595699.1|	-	0.00017	21.5	0.0	0.0002	21.3	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
KduI	PF04962.12	gi|336252592|ref|YP_004595699.1|	-	0.0032	16.8	0.0	0.0038	16.6	0.0	1.1	1	0	0	1	1	1	1	KduI/IolB	family
Cupin_7	PF12973.7	gi|336252592|ref|YP_004595699.1|	-	0.0043	16.9	0.0	0.0056	16.6	0.0	1.1	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
AraC_binding	PF02311.19	gi|336252592|ref|YP_004595699.1|	-	0.0096	15.8	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
DMSP_lyase	PF16867.5	gi|336252592|ref|YP_004595699.1|	-	0.045	13.4	0.0	0.064	12.9	0.0	1.1	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
Cupin_1	PF00190.22	gi|336252592|ref|YP_004595699.1|	-	0.061	12.9	0.0	0.11	12.1	0.0	1.3	1	1	0	1	1	1	0	Cupin
Ppnp	PF06865.11	gi|336252592|ref|YP_004595699.1|	-	0.24	11.9	0.0	0.39	11.2	0.0	1.4	1	0	0	1	1	1	0	Pyrimidine/purine	nucleoside	phosphorylase
UPRTase	PF14681.6	gi|336252593|ref|YP_004595700.1|	-	7.7e-48	162.7	0.0	9.1e-48	162.4	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|336252593|ref|YP_004595700.1|	-	7e-10	38.6	0.1	9.5e-10	38.2	0.1	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Tape_meas_lam_C	PF09718.10	gi|336252595|ref|YP_004595702.1|	-	0.032	14.4	0.3	0.083	13.0	0.3	1.6	1	0	0	1	1	1	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
CDC45	PF02724.14	gi|336252595|ref|YP_004595702.1|	-	3.7	5.7	10.0	5.6	5.1	10.0	1.2	1	0	0	1	1	1	0	CDC45-like	protein
BPD_transp_1	PF00528.22	gi|336252596|ref|YP_004595703.1|	-	2.3e-17	63.3	7.7	2.3e-17	63.3	7.7	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336252597|ref|YP_004595704.1|	-	7.6e-33	113.9	0.0	1e-32	113.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252597|ref|YP_004595704.1|	-	2.4e-12	47.3	0.0	4.7e-05	23.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336252597|ref|YP_004595704.1|	-	7.9e-07	28.7	0.0	2.9e-06	26.9	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336252597|ref|YP_004595704.1|	-	6.1e-05	22.7	0.0	0.00013	21.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|336252597|ref|YP_004595704.1|	-	0.00058	19.7	0.0	0.01	15.6	0.0	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336252597|ref|YP_004595704.1|	-	0.00079	19.9	0.1	0.0015	18.9	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336252597|ref|YP_004595704.1|	-	0.00088	19.8	0.0	0.0011	19.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336252597|ref|YP_004595704.1|	-	0.0021	18.0	0.0	0.0043	17.0	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|336252597|ref|YP_004595704.1|	-	0.0027	18.0	0.0	0.0043	17.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|336252597|ref|YP_004595704.1|	-	0.0059	15.5	0.0	1.6	7.4	0.0	2.3	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.6	gi|336252597|ref|YP_004595704.1|	-	0.012	15.4	0.0	0.019	14.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|336252597|ref|YP_004595704.1|	-	0.013	15.1	0.2	0.048	13.2	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|336252597|ref|YP_004595704.1|	-	0.016	14.6	0.0	0.26	10.6	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|336252597|ref|YP_004595704.1|	-	0.024	14.8	0.1	0.042	14.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|336252597|ref|YP_004595704.1|	-	0.052	12.3	0.1	0.34	9.6	0.0	1.9	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
AAA_24	PF13479.6	gi|336252597|ref|YP_004595704.1|	-	0.079	12.7	0.0	0.55	9.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|336252597|ref|YP_004595704.1|	-	0.12	12.4	0.0	0.4	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
BPD_transp_1	PF00528.22	gi|336252598|ref|YP_004595705.1|	-	3.1e-16	59.7	10.1	3.1e-16	59.7	10.1	1.5	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1232	PF06803.12	gi|336252598|ref|YP_004595705.1|	-	1	9.2	6.4	4.4	7.2	3.3	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1232)
SBP_bac_3	PF00497.20	gi|336252599|ref|YP_004595706.1|	-	4.3e-54	183.3	0.6	5e-54	183.1	0.6	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Lig_chan-Glu_bd	PF10613.9	gi|336252599|ref|YP_004595706.1|	-	5.6e-08	33.0	0.0	4.2e-07	30.2	0.0	2.2	1	1	0	1	1	1	1	Ligated	ion	channel	L-glutamate-	and	glycine-binding	site
TAT_signal	PF10518.9	gi|336252599|ref|YP_004595706.1|	-	0.023	14.5	0.0	0.05	13.5	0.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NMT1	PF09084.11	gi|336252599|ref|YP_004595706.1|	-	0.027	14.4	0.1	0.87	9.5	0.0	2.2	1	1	1	2	2	2	0	NMT1/THI5	like
PHO4	PF01384.20	gi|336252600|ref|YP_004595707.1|	-	4.5e-44	150.9	34.7	4.5e-44	150.9	34.7	1.6	1	1	1	2	2	2	1	Phosphate	transporter	family
DUF1449	PF07290.11	gi|336252601|ref|YP_004595708.1|	-	0.0081	15.8	1.0	0.0081	15.8	1.0	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1449)
DUF2975	PF11188.8	gi|336252601|ref|YP_004595708.1|	-	7.1	6.5	8.5	7.8	6.4	3.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
DUF21	PF01595.20	gi|336252602|ref|YP_004595709.1|	-	2.8e-49	167.2	0.7	4.7e-49	166.5	0.7	1.4	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|336252602|ref|YP_004595709.1|	-	6.9e-21	74.1	3.3	6.9e-21	74.1	3.3	2.0	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|336252602|ref|YP_004595709.1|	-	1.3e-13	51.1	3.1	1.7e-06	28.4	0.2	3.1	2	0	0	2	2	2	2	CBS	domain
WSS_VP	PF12175.8	gi|336252602|ref|YP_004595709.1|	-	0.056	12.9	0.1	0.056	12.9	0.1	1.8	2	0	0	2	2	2	0	White	spot	syndrome	virus	structural	envelope	protein	VP
DUF4233	PF14017.6	gi|336252602|ref|YP_004595709.1|	-	7.7	6.9	6.8	3.9	7.9	2.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4233)
GST_N_3	PF13417.6	gi|336252603|ref|YP_004595710.1|	-	1.2e-13	51.2	0.0	1.4e-13	51.0	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|336252603|ref|YP_004595710.1|	-	3.8e-12	46.2	0.1	5.6e-12	45.7	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|336252603|ref|YP_004595710.1|	-	2.6e-11	43.7	0.0	3.1e-11	43.4	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|336252603|ref|YP_004595710.1|	-	1.5e-05	25.3	0.0	1.9e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|336252603|ref|YP_004595710.1|	-	0.028	14.8	0.1	0.038	14.4	0.1	1.5	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
TraF	PF13728.6	gi|336252603|ref|YP_004595710.1|	-	0.077	12.8	0.1	0.12	12.1	0.1	1.5	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
Redoxin	PF08534.10	gi|336252603|ref|YP_004595710.1|	-	0.14	11.9	0.0	0.19	11.4	0.0	1.3	1	1	0	1	1	1	0	Redoxin
AhpC-TSA	PF00578.21	gi|336252604|ref|YP_004595711.1|	-	1.5e-13	50.8	0.0	1.8e-13	50.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336252604|ref|YP_004595711.1|	-	3.5e-07	30.0	0.0	5.6e-07	29.4	0.0	1.4	1	1	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|336252604|ref|YP_004595711.1|	-	0.00035	20.7	0.0	0.00048	20.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
DUF4082	PF13313.6	gi|336252604|ref|YP_004595711.1|	-	0.075	13.1	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4082)
Sua5_yciO_yrdC	PF01300.18	gi|336252605|ref|YP_004595712.1|	-	5.4e-48	162.8	0.0	6.3e-48	162.6	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
Amidohydro_1	PF01979.20	gi|336252607|ref|YP_004595714.1|	-	5e-39	134.6	0.0	2.3e-38	132.4	0.0	1.8	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|336252607|ref|YP_004595714.1|	-	4.1e-17	62.8	4.0	7.5e-12	45.5	0.3	2.3	1	1	1	2	2	2	2	Amidohydrolase	family
HTH_10	PF04967.12	gi|336252608|ref|YP_004595715.1|	-	8.7e-14	51.1	0.1	1.4e-13	50.5	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|336252608|ref|YP_004595715.1|	-	6.3e-06	25.8	0.4	8e-05	22.2	0.4	2.2	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_psq	PF05225.16	gi|336252608|ref|YP_004595715.1|	-	0.007	16.1	0.1	0.015	15.0	0.1	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_30	PF13556.6	gi|336252608|ref|YP_004595715.1|	-	0.011	15.6	0.0	0.024	14.4	0.0	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336252608|ref|YP_004595715.1|	-	0.052	13.1	0.0	0.097	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_1_2	PF13022.6	gi|336252608|ref|YP_004595715.1|	-	0.061	13.5	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HAD	PF12710.7	gi|336252609|ref|YP_004595716.1|	-	2.2e-24	86.9	1.3	2.6e-24	86.7	1.3	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252609|ref|YP_004595716.1|	-	6.8e-15	55.9	11.6	7.4e-13	49.3	5.7	2.1	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|336252609|ref|YP_004595716.1|	-	7.7e-11	42.2	1.3	6.7e-09	35.9	0.1	2.9	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|336252609|ref|YP_004595716.1|	-	6.7e-07	29.6	0.2	7.1e-05	23.0	0.0	2.4	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
UMPH-1	PF05822.12	gi|336252609|ref|YP_004595716.1|	-	0.0029	17.2	0.0	0.0051	16.3	0.0	1.4	1	1	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
Put_Phosphatase	PF06888.12	gi|336252609|ref|YP_004595716.1|	-	0.065	12.6	0.0	0.83	9.0	0.0	2.0	2	0	0	2	2	2	0	Putative	Phosphatase
HXXSHH	PF07586.11	gi|336252609|ref|YP_004595716.1|	-	0.14	11.7	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1552)
S6PP	PF05116.13	gi|336252609|ref|YP_004595716.1|	-	0.2	11.2	0.0	0.42	10.1	0.0	1.5	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
PAS_4	PF08448.10	gi|336252610|ref|YP_004595717.1|	-	2.1e-22	79.5	1.7	2.1e-10	40.8	0.1	2.9	3	1	1	4	4	4	2	PAS	fold
PAS_9	PF13426.7	gi|336252610|ref|YP_004595717.1|	-	6.9e-21	74.5	0.0	3.2e-10	40.2	0.0	2.7	3	0	0	3	3	3	2	PAS	domain
HATPase_c	PF02518.26	gi|336252610|ref|YP_004595717.1|	-	5.1e-17	62.4	0.0	9.7e-17	61.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|336252610|ref|YP_004595717.1|	-	2e-16	60.0	0.0	1.9e-11	43.9	0.0	2.8	2	1	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|336252610|ref|YP_004595717.1|	-	6.6e-14	51.5	0.0	3e-07	30.3	0.0	3.6	3	0	0	3	3	3	2	PAS	domain
HATPase_c_2	PF13581.6	gi|336252610|ref|YP_004595717.1|	-	1.2e-07	31.7	0.2	1.2e-07	31.7	0.2	2.0	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_3	PF08447.12	gi|336252610|ref|YP_004595717.1|	-	1e-05	25.7	0.0	0.00013	22.2	0.0	2.4	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|336252610|ref|YP_004595717.1|	-	0.0035	17.3	0.3	0.011	15.8	0.1	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|336252610|ref|YP_004595717.1|	-	0.0061	16.5	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|336252610|ref|YP_004595717.1|	-	0.023	14.5	0.0	0.041	13.7	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|336252610|ref|YP_004595717.1|	-	0.044	13.3	0.1	0.075	12.6	0.1	1.3	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
PAS_7	PF12860.7	gi|336252610|ref|YP_004595717.1|	-	0.068	13.3	0.0	1.5	9.0	0.0	2.6	2	0	0	2	2	2	0	PAS	fold
PAS_12	PF18095.1	gi|336252610|ref|YP_004595717.1|	-	0.13	11.9	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	UPF0242	C-terminal	PAS-like	domain
2-Hacid_dh_C	PF02826.19	gi|336252611|ref|YP_004595718.1|	-	1.5e-60	203.6	0.0	3e-60	202.6	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|336252611|ref|YP_004595718.1|	-	2.9e-37	127.3	0.4	5e-37	126.6	0.4	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
IlvN	PF07991.12	gi|336252611|ref|YP_004595718.1|	-	1.1e-05	25.0	0.0	7.4e-05	22.4	0.0	2.2	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ACT	PF01842.25	gi|336252611|ref|YP_004595718.1|	-	2.3e-05	24.1	0.6	6.4e-05	22.6	0.0	2.2	2	0	0	2	2	2	1	ACT	domain
UDPG_MGDP_dh_C	PF03720.15	gi|336252611|ref|YP_004595718.1|	-	0.00016	22.0	0.0	0.00072	19.9	0.0	2.1	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_7	PF13241.6	gi|336252611|ref|YP_004595718.1|	-	0.0014	19.1	0.0	0.0037	17.7	0.0	1.8	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_2	PF03446.15	gi|336252611|ref|YP_004595718.1|	-	0.0031	17.7	2.2	0.018	15.2	0.0	3.0	4	0	0	4	4	4	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.18	gi|336252611|ref|YP_004595718.1|	-	0.017	15.4	0.0	0.096	13.0	0.0	2.4	1	0	0	1	1	1	0	TrkA-N	domain
AdoHcyase_NAD	PF00670.21	gi|336252611|ref|YP_004595718.1|	-	0.018	15.1	0.1	0.11	12.6	0.0	2.1	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ELFV_dehydrog	PF00208.21	gi|336252611|ref|YP_004595718.1|	-	0.027	14.2	0.1	0.098	12.4	0.0	1.9	2	0	0	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
PDZ	PF00595.24	gi|336252611|ref|YP_004595718.1|	-	0.027	14.8	1.3	0.078	13.3	0.2	2.4	2	0	0	2	2	2	0	PDZ	domain
Lipase_GDSL_3	PF14606.6	gi|336252613|ref|YP_004595720.1|	-	1.2e-27	97.2	0.0	1.5e-27	96.8	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|336252613|ref|YP_004595720.1|	-	4.6e-15	56.5	0.2	7.1e-15	55.9	0.2	1.3	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
His_Phos_1	PF00300.22	gi|336252613|ref|YP_004595720.1|	-	0.033	13.9	0.0	0.061	13.0	0.0	1.3	1	0	0	1	1	1	0	Histidine	phosphatase	superfamily	(branch	1)
PRA-CH	PF01502.18	gi|336252614|ref|YP_004595721.1|	-	2.9e-35	119.9	0.1	4.5e-35	119.3	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
EcoR124_C	PF12008.8	gi|336252615|ref|YP_004595722.1|	-	0.0081	15.8	1.0	0.013	15.2	0.2	1.7	2	0	0	2	2	2	1	Type	I	restriction	and	modification	enzyme	-	subunit	R	C	terminal
Spc7	PF08317.11	gi|336252615|ref|YP_004595722.1|	-	0.028	13.3	13.1	0.03	13.2	2.0	3.5	4	0	0	4	4	4	0	Spc7	kinetochore	protein
Mu-like_Pro	PF10123.9	gi|336252615|ref|YP_004595722.1|	-	0.12	11.9	0.2	0.12	11.9	0.2	2.8	2	1	1	3	3	3	0	Mu-like	prophage	I	protein
DLP_helical	PF18709.1	gi|336252615|ref|YP_004595722.1|	-	1.3	8.1	4.2	1.2	8.3	0.1	2.3	1	1	0	2	2	2	0	Dynamin-like	helical	domain
DUF3106	PF11304.8	gi|336252615|ref|YP_004595722.1|	-	6.1	7.4	7.9	2.4	8.6	0.3	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3106)
DASH_Spc19	PF08287.11	gi|336252615|ref|YP_004595722.1|	-	6.7	6.6	8.1	9.5	6.1	0.3	3.3	4	0	0	4	4	4	0	Spc19
Usp	PF00582.26	gi|336252616|ref|YP_004595723.1|	-	4.9e-33	114.6	0.6	5.6e-33	114.4	0.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
HPP	PF04982.13	gi|336252617|ref|YP_004595724.1|	-	1e-18	67.7	8.2	1.7e-18	67.0	8.2	1.3	1	0	0	1	1	1	1	HPP	family
PGM_PMM_I	PF02878.16	gi|336252618|ref|YP_004595725.1|	-	6.4e-34	116.6	0.0	1.1e-33	115.9	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|336252618|ref|YP_004595725.1|	-	6.8e-30	103.7	2.7	4.8e-29	101.0	0.3	2.6	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|336252618|ref|YP_004595725.1|	-	1.3e-15	57.3	0.1	4.3e-15	55.7	0.1	1.9	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|336252618|ref|YP_004595725.1|	-	1.7e-15	57.2	0.0	3.5e-15	56.2	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Usp	PF00582.26	gi|336252618|ref|YP_004595725.1|	-	0.24	11.9	5.0	2.1	8.8	0.1	2.9	3	0	0	3	3	3	0	Universal	stress	protein	family
SBP_bac_11	PF13531.6	gi|336252619|ref|YP_004595726.1|	-	0.02	14.7	0.8	0.086	12.6	0.8	2.0	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
Pribosyltran_N	PF13793.6	gi|336252621|ref|YP_004595728.1|	-	1.2e-18	67.1	0.0	1.2e-17	63.9	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|336252621|ref|YP_004595728.1|	-	1.1e-11	44.5	0.9	6.5e-11	42.0	0.2	2.2	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|336252621|ref|YP_004595728.1|	-	5.1e-08	33.2	0.5	9.7e-08	32.3	0.5	1.4	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|336252621|ref|YP_004595728.1|	-	5.5e-05	22.7	0.0	0.0001	21.8	0.0	1.4	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Terminase_1	PF03354.15	gi|336252621|ref|YP_004595728.1|	-	0.16	10.5	0.0	0.21	10.1	0.0	1.1	1	0	0	1	1	1	0	Phage	Terminase
HNOB	PF07700.15	gi|336252622|ref|YP_004595729.1|	-	1.7e-23	83.4	0.0	1.9e-23	83.2	0.0	1.0	1	0	0	1	1	1	1	Haem-NO-binding
Thyroglob_assoc	PF16597.5	gi|336252622|ref|YP_004595729.1|	-	0.16	12.3	0.2	16	5.9	0.1	2.3	2	0	0	2	2	2	0	Thyroglobulin_1	repeat	associated	disordered	domain
CARDB	PF07705.11	gi|336252623|ref|YP_004595730.1|	-	7.2e-08	32.6	2.0	1.9e-06	28.0	0.2	3.2	2	1	1	3	3	3	1	CARDB
ALF	PF03752.13	gi|336252623|ref|YP_004595730.1|	-	0.06	13.3	3.0	0.67	10.0	0.3	3.4	2	0	0	2	2	2	0	Short	repeats	of	unknown	function
Chorion_3	PF05387.11	gi|336252623|ref|YP_004595730.1|	-	0.28	10.8	4.7	2.2	7.8	1.0	2.6	2	0	0	2	2	2	0	Chorion	family	3
tRNA-synt_1	PF00133.22	gi|336252624|ref|YP_004595731.1|	-	1e-177	592.1	1.1	1.4e-177	591.6	1.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|336252624|ref|YP_004595731.1|	-	8e-29	100.6	0.2	1.7e-28	99.5	0.2	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|336252624|ref|YP_004595731.1|	-	2e-25	89.4	0.3	1.3e-09	37.3	0.0	3.7	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|336252624|ref|YP_004595731.1|	-	2.3e-05	24.0	0.0	6.4e-05	22.6	0.0	1.7	1	1	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|336252624|ref|YP_004595731.1|	-	0.0071	15.7	0.0	0.84	8.9	0.0	2.6	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
DUF2892	PF11127.8	gi|336252625|ref|YP_004595732.1|	-	0.66	10.1	5.4	0.97	9.5	5.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
UDG	PF03167.19	gi|336252626|ref|YP_004595733.1|	-	3.2e-27	95.4	0.0	4e-27	95.1	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
HIT	PF01230.23	gi|336252627|ref|YP_004595734.1|	-	3e-28	98.4	0.0	3.7e-28	98.1	0.0	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|336252627|ref|YP_004595734.1|	-	5.9e-16	59.0	0.0	7.3e-16	58.7	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|336252627|ref|YP_004595734.1|	-	0.033	14.0	0.0	0.048	13.5	0.0	1.2	1	0	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
Arc_PepC_II	PF06847.11	gi|336252629|ref|YP_004595736.1|	-	3.3e-10	40.3	1.4	5.8e-08	33.2	0.1	2.9	4	0	0	4	4	4	2	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|336252629|ref|YP_004595736.1|	-	7.2e-07	29.6	10.0	7.2e-07	29.6	10.0	1.8	2	1	0	2	2	2	1	Type	IV	leader	peptidase	family
MCPsignal	PF00015.21	gi|336252630|ref|YP_004595737.1|	-	8.8e-46	155.9	45.9	1.1e-43	149.1	27.9	3.2	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|336252630|ref|YP_004595737.1|	-	1.1e-06	28.8	32.3	0.0048	17.1	4.3	4.2	2	2	1	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|336252630|ref|YP_004595737.1|	-	9.7e-05	22.4	25.7	0.09	12.8	0.7	4.1	2	1	2	4	4	4	4	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|336252630|ref|YP_004595737.1|	-	0.00021	21.3	37.0	0.029	14.4	5.2	4.1	3	1	1	4	4	4	3	Laminin	Domain	II
Syntaxin-6_N	PF09177.11	gi|336252630|ref|YP_004595737.1|	-	0.0036	17.8	24.7	2.3	8.8	1.0	4.0	2	2	1	3	3	3	3	Syntaxin	6,	N-terminal
CREPT	PF16566.5	gi|336252630|ref|YP_004595737.1|	-	0.0089	16.2	13.7	0.23	11.6	1.4	2.8	1	1	1	3	3	3	2	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
COG2	PF06148.11	gi|336252630|ref|YP_004595737.1|	-	0.01	16.0	2.4	0.01	16.0	2.4	4.4	2	2	2	4	4	4	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RmuC	PF02646.16	gi|336252630|ref|YP_004595737.1|	-	0.019	14.1	15.6	0.24	10.5	1.5	3.9	2	2	2	4	4	4	0	RmuC	family
PIN_6	PF17146.4	gi|336252630|ref|YP_004595737.1|	-	0.032	14.7	11.9	0.047	14.2	0.4	3.7	2	1	2	4	4	4	0	PIN	domain	of	ribonuclease
Spectrin	PF00435.21	gi|336252630|ref|YP_004595737.1|	-	0.041	14.4	1.0	0.041	14.4	1.0	3.8	1	1	3	4	4	4	0	Spectrin	repeat
BLOC1_2	PF10046.9	gi|336252630|ref|YP_004595737.1|	-	0.064	13.6	25.5	2.2	8.6	0.5	4.8	3	1	1	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Fib_alpha	PF08702.10	gi|336252630|ref|YP_004595737.1|	-	0.077	13.2	17.7	0.14	12.3	2.1	3.1	2	2	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DASH_Dam1	PF08653.10	gi|336252630|ref|YP_004595737.1|	-	0.15	11.9	6.8	0.51	10.2	0.1	4.0	4	1	0	4	4	3	0	DASH	complex	subunit	Dam1
FlgN	PF05130.12	gi|336252630|ref|YP_004595737.1|	-	0.15	12.5	20.1	0.11	13.1	3.0	3.3	1	1	3	4	4	4	0	FlgN	protein
MAD	PF05557.13	gi|336252630|ref|YP_004595737.1|	-	0.34	9.2	20.9	1.1	7.5	14.3	2.2	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
STAT_alpha	PF01017.20	gi|336252630|ref|YP_004595737.1|	-	0.34	10.8	8.6	3	7.7	3.2	2.7	1	1	2	3	3	3	0	STAT	protein,	all-alpha	domain
HisK_N	PF09385.10	gi|336252630|ref|YP_004595737.1|	-	0.44	10.5	5.2	0.19	11.7	0.5	2.5	2	1	0	3	3	3	0	Histidine	kinase	N	terminal
LXG	PF04740.12	gi|336252630|ref|YP_004595737.1|	-	0.58	9.8	26.6	0.054	13.2	4.9	3.6	1	1	2	3	3	3	0	LXG	domain	of	WXG	superfamily
Mod_r	PF07200.13	gi|336252630|ref|YP_004595737.1|	-	0.63	10.1	16.6	0.36	10.9	0.6	3.4	1	1	1	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
CorA	PF01544.18	gi|336252630|ref|YP_004595737.1|	-	0.75	9.0	17.0	1.5	8.1	4.1	2.2	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Laminin_I	PF06008.14	gi|336252630|ref|YP_004595737.1|	-	0.84	9.3	29.4	0.25	11.0	3.6	3.4	1	1	2	3	3	3	0	Laminin	Domain	I
YkyA	PF10368.9	gi|336252630|ref|YP_004595737.1|	-	0.93	9.1	34.3	0.11	12.2	2.1	3.9	1	1	3	4	4	4	0	Putative	cell-wall	binding	lipoprotein
Snapin_Pallidin	PF14712.6	gi|336252630|ref|YP_004595737.1|	-	0.96	9.9	14.1	5.7	7.4	1.5	4.0	1	1	5	6	6	6	0	Snapin/Pallidin
DUF2203	PF09969.9	gi|336252630|ref|YP_004595737.1|	-	1	10.1	23.0	3	8.6	2.8	3.6	1	1	2	4	4	4	0	Uncharacterized	conserved	protein	(DUF2203)
Spc7	PF08317.11	gi|336252630|ref|YP_004595737.1|	-	1.1	8.0	28.5	0.34	9.7	7.2	2.6	1	1	2	3	3	3	0	Spc7	kinetochore	protein
ISG65-75	PF11727.8	gi|336252630|ref|YP_004595737.1|	-	1.2	8.3	29.4	3.1	6.9	3.0	2.9	1	1	2	3	3	3	0	Invariant	surface	glycoprotein
SKA1	PF07160.12	gi|336252630|ref|YP_004595737.1|	-	1.2	8.9	16.3	3	7.6	8.1	2.6	2	1	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Seryl_tRNA_N	PF02403.22	gi|336252630|ref|YP_004595737.1|	-	1.5	9.0	27.1	2.7	8.2	0.9	4.2	2	2	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
SesA	PF17107.5	gi|336252630|ref|YP_004595737.1|	-	1.6	9.0	19.0	5	7.3	6.7	3.9	1	1	2	3	3	3	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Sec34	PF04136.15	gi|336252630|ref|YP_004595737.1|	-	2	8.3	17.0	15	5.4	4.2	4.0	2	2	1	4	4	4	0	Sec34-like	family
Fzo_mitofusin	PF04799.13	gi|336252630|ref|YP_004595737.1|	-	2.2	7.8	15.4	2.5	7.7	0.4	3.9	2	2	2	4	4	4	0	fzo-like	conserved	region
CheZ	PF04344.13	gi|336252630|ref|YP_004595737.1|	-	2.6	7.9	21.9	4	7.3	8.3	3.0	1	1	1	2	2	2	0	Chemotaxis	phosphatase,	CheZ
SKA2	PF16740.5	gi|336252630|ref|YP_004595737.1|	-	2.8	7.7	18.0	0.55	10.0	0.7	3.9	1	1	1	3	3	3	0	Spindle	and	kinetochore-associated	protein	2
COG5	PF10392.9	gi|336252630|ref|YP_004595737.1|	-	3.3	7.9	14.1	0.34	11.1	0.5	3.4	2	2	1	3	3	3	0	Golgi	transport	complex	subunit	5
Atg14	PF10186.9	gi|336252630|ref|YP_004595737.1|	-	3.4	6.7	11.7	6.9	5.7	2.1	3.1	1	1	2	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Dor1	PF04124.12	gi|336252630|ref|YP_004595737.1|	-	3.5	6.2	15.1	3	6.4	3.2	2.9	2	1	0	2	2	2	0	Dor1-like	family
Prominin	PF05478.11	gi|336252630|ref|YP_004595737.1|	-	3.9	5.3	14.4	3.2	5.6	4.7	2.2	1	1	1	2	2	2	0	Prominin
T3SSipB	PF16535.5	gi|336252630|ref|YP_004595737.1|	-	4	7.9	29.1	1.3	9.5	9.7	2.6	1	1	2	3	3	3	0	Type	III	cell	invasion	protein	SipB
FUSC	PF04632.12	gi|336252630|ref|YP_004595737.1|	-	4.8	5.6	9.8	31	2.9	9.8	2.0	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF489	PF04356.12	gi|336252630|ref|YP_004595737.1|	-	5.1	7.1	8.3	4.7	7.2	2.0	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF489)
Med9	PF07544.13	gi|336252630|ref|YP_004595737.1|	-	5.2	7.2	11.3	14	5.9	1.4	4.2	1	1	2	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
APG17	PF04108.12	gi|336252630|ref|YP_004595737.1|	-	6.4	5.8	29.6	6.8	5.7	14.6	3.0	1	1	2	3	3	3	0	Autophagy	protein	Apg17
TMPIT	PF07851.13	gi|336252630|ref|YP_004595737.1|	-	6.5	5.9	16.6	2.4	7.3	1.1	3.1	1	1	3	4	4	4	0	TMPIT-like	protein
CENP-H	PF05837.12	gi|336252630|ref|YP_004595737.1|	-	7.6	7.0	27.1	5.4	7.5	2.3	3.8	1	1	3	4	4	4	0	Centromere	protein	H	(CENP-H)
V_ATPase_I	PF01496.19	gi|336252630|ref|YP_004595737.1|	-	7.9	4.3	18.8	1.8	6.4	12.0	2.0	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Peptidase_M9_N	PF08453.10	gi|336252630|ref|YP_004595737.1|	-	7.9	6.1	9.5	1	9.1	1.1	2.9	1	1	3	4	4	4	0	Peptidase	family	M9	N-terminal
SpoIIAA-like	PF11964.8	gi|336252631|ref|YP_004595738.1|	-	0.079	14.0	0.9	0.13	13.3	0.9	1.5	1	1	0	1	1	1	0	SpoIIAA-like
Fer2	PF00111.27	gi|336252632|ref|YP_004595739.1|	-	4.7e-15	55.3	0.4	6.3e-15	54.9	0.4	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|336252632|ref|YP_004595739.1|	-	0.074	13.1	0.2	0.14	12.3	0.2	1.6	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
PHO4	PF01384.20	gi|336252633|ref|YP_004595740.1|	-	7.6e-39	133.7	33.9	8.8e-39	133.5	32.4	1.8	1	1	1	2	2	2	1	Phosphate	transporter	family
Usp	PF00582.26	gi|336252634|ref|YP_004595741.1|	-	8e-24	84.7	2.7	9.3e-24	84.5	2.7	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
AA_permease_2	PF13520.6	gi|336252635|ref|YP_004595742.1|	-	3.6e-44	151.3	36.3	4.3e-44	151.0	36.3	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|336252635|ref|YP_004595742.1|	-	1.9e-35	122.4	33.3	2.5e-35	122.0	33.3	1.2	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|336252635|ref|YP_004595742.1|	-	0.0022	16.9	6.7	0.011	14.6	6.7	2.0	1	1	0	1	1	1	1	Spore	germination	protein
AA_permease_C	PF13906.6	gi|336252635|ref|YP_004595742.1|	-	0.029	14.5	1.8	0.029	14.5	1.8	2.9	3	0	0	3	3	3	0	C-terminus	of	AA_permease
Usp	PF00582.26	gi|336252636|ref|YP_004595743.1|	-	1.9e-06	28.5	5.3	7.5e-05	23.3	2.8	2.9	2	1	0	2	2	2	1	Universal	stress	protein	family
Usp	PF00582.26	gi|336252637|ref|YP_004595744.1|	-	6.9e-06	26.6	5.0	2.2e-05	25.0	4.3	2.0	2	0	0	2	2	2	1	Universal	stress	protein	family
PHO4	PF01384.20	gi|336252638|ref|YP_004595745.1|	-	6.8e-40	137.1	27.4	1.5e-39	136.0	27.4	1.5	1	1	0	1	1	1	1	Phosphate	transporter	family
SpoVS	PF04232.12	gi|336252638|ref|YP_004595745.1|	-	0.13	12.0	0.5	1.1	9.0	0.1	2.7	2	1	0	2	2	2	0	Stage	V	sporulation	protein	S	(SpoVS)
ATP-cone	PF03477.16	gi|336252639|ref|YP_004595746.1|	-	0.026	15.1	1.3	0.037	14.6	1.3	1.2	1	0	0	1	1	1	0	ATP	cone	domain
DUF2884	PF11101.8	gi|336252639|ref|YP_004595746.1|	-	0.032	13.7	0.2	0.044	13.3	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2884)
DUF5082	PF16888.5	gi|336252639|ref|YP_004595746.1|	-	0.037	14.3	0.2	0.049	13.9	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5082)
CobD_Cbib	PF03186.13	gi|336252639|ref|YP_004595746.1|	-	0.12	11.6	0.2	0.14	11.4	0.2	1.0	1	0	0	1	1	1	0	CobD/Cbib	protein
CSN4_RPN5_eIF3a	PF18420.1	gi|336252639|ref|YP_004595746.1|	-	0.17	12.1	1.1	0.37	11.0	0.3	1.8	2	0	0	2	2	2	0	CSN4/RPN5/eIF3a	helix	turn	helix	domain
GCIP	PF13324.6	gi|336252639|ref|YP_004595746.1|	-	1.3	8.6	4.9	1.7	8.2	4.9	1.1	1	0	0	1	1	1	0	Grap2	and	cyclin-D-interacting
CitMHS	PF03600.16	gi|336252640|ref|YP_004595747.1|	-	2.5e-58	197.6	14.6	4.1e-58	196.9	14.6	1.3	1	0	0	1	1	1	1	Citrate	transporter
Na_sulph_symp	PF00939.19	gi|336252640|ref|YP_004595747.1|	-	6.7e-24	84.8	37.4	2.7e-16	59.7	18.6	3.1	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
TrkA_C	PF02080.21	gi|336252640|ref|YP_004595747.1|	-	1.6e-18	66.2	6.6	5.7e-11	42.1	0.9	2.4	2	0	0	2	2	2	2	TrkA-C	domain
His_biosynth	PF00977.21	gi|336252641|ref|YP_004595748.1|	-	1e-78	264.0	4.0	1.1e-78	263.8	4.0	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|336252641|ref|YP_004595748.1|	-	9.9e-13	47.8	0.1	5.1e-06	25.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|336252641|ref|YP_004595748.1|	-	5e-12	45.6	0.6	4.2e-08	32.8	0.1	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
ThiG	PF05690.14	gi|336252641|ref|YP_004595748.1|	-	1.3e-10	41.0	6.1	5.9e-05	22.5	0.3	2.1	1	1	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Trp_syntA	PF00290.20	gi|336252641|ref|YP_004595748.1|	-	5.7e-08	31.9	1.3	0.00099	18.0	0.2	2.2	2	0	0	2	2	2	2	Tryptophan	synthase	alpha	chain
NMO	PF03060.15	gi|336252641|ref|YP_004595748.1|	-	2e-07	30.7	13.5	1.5e-05	24.6	4.8	2.1	1	1	1	2	2	2	2	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|336252641|ref|YP_004595748.1|	-	5.7e-06	25.6	2.0	0.0016	17.5	0.3	2.2	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
IGPS	PF00218.21	gi|336252641|ref|YP_004595748.1|	-	5.7e-06	25.7	1.0	0.0013	18.0	0.0	3.3	2	2	2	4	4	4	1	Indole-3-glycerol	phosphate	synthase
PcrB	PF01884.17	gi|336252641|ref|YP_004595748.1|	-	1.2e-05	24.9	5.1	0.0088	15.5	0.3	2.3	2	1	0	2	2	2	2	PcrB	family
NanE	PF04131.14	gi|336252641|ref|YP_004595748.1|	-	3.2e-05	23.2	3.2	0.0077	15.4	0.5	2.6	1	1	2	3	3	3	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
G3P_antiterm	PF04309.12	gi|336252641|ref|YP_004595748.1|	-	3.5e-05	23.3	1.2	0.002	17.5	0.1	2.2	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
TMP-TENI	PF02581.17	gi|336252641|ref|YP_004595748.1|	-	9e-05	21.9	3.6	0.0033	16.8	0.7	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase
B12-binding	PF02310.19	gi|336252641|ref|YP_004595748.1|	-	0.0028	17.7	4.3	0.6	10.2	0.1	2.6	1	1	1	2	2	2	2	B12	binding	domain
FMN_dh	PF01070.18	gi|336252641|ref|YP_004595748.1|	-	0.0058	15.7	10.8	0.042	12.9	2.1	2.1	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
DNA_pol_lambd_f	PF10391.9	gi|336252641|ref|YP_004595748.1|	-	0.096	12.5	0.0	16	5.4	0.0	2.9	3	0	0	3	3	3	0	Fingers	domain	of	DNA	polymerase	lambda
TBP-binding	PF09247.11	gi|336252641|ref|YP_004595748.1|	-	0.13	12.5	0.0	0.25	11.6	0.0	1.4	1	0	0	1	1	1	0	TATA	box-binding	protein	binding
Ribul_P_3_epim	PF00834.19	gi|336252641|ref|YP_004595748.1|	-	0.17	11.3	1.4	0.43	9.9	0.1	2.2	2	1	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
Glyco_trans_4_4	PF13579.6	gi|336252641|ref|YP_004595748.1|	-	5.1	7.5	8.3	14	6.1	2.4	2.8	3	1	0	3	3	2	0	Glycosyl	transferase	4-like	domain
MFS_1	PF07690.16	gi|336252642|ref|YP_004595749.1|	-	2e-34	119.1	56.5	1.9e-21	76.4	26.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Copper-bind	PF00127.20	gi|336252643|ref|YP_004595750.1|	-	1.4e-07	31.9	0.0	2.3e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|336252643|ref|YP_004595750.1|	-	0.0086	15.9	7.5	0.012	15.4	7.5	1.2	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Secretin_N_2	PF07655.13	gi|336252643|ref|YP_004595750.1|	-	0.011	16.3	0.8	0.011	16.3	0.8	1.7	2	0	0	2	2	2	0	Secretin	N-terminal	domain
Aminotran_5	PF00266.19	gi|336252644|ref|YP_004595751.1|	-	8.5e-29	100.6	0.0	1.1e-28	100.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Glyco_hydro_1	PF00232.18	gi|336252644|ref|YP_004595751.1|	-	0.02	13.3	0.1	0.14	10.6	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	1
Peptidase_S8	PF00082.22	gi|336252645|ref|YP_004595752.1|	-	1.7e-49	168.7	2.6	2.6e-49	168.1	2.6	1.2	1	0	0	1	1	1	1	Subtilase	family
eIF-1a	PF01176.19	gi|336252646|ref|YP_004595753.1|	-	6.1e-25	86.8	0.2	7.6e-25	86.5	0.2	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
ChapFlgA_N	PF17656.1	gi|336252646|ref|YP_004595753.1|	-	0.0099	16.0	0.0	0.018	15.2	0.0	1.4	1	0	0	1	1	1	1	FlgA	N-terminal	domain
Sclerostin	PF05463.11	gi|336252646|ref|YP_004595753.1|	-	0.076	12.7	0.0	0.098	12.4	0.0	1.1	1	0	0	1	1	1	0	Sclerostin	(SOST)
zinc_ribbon_5	PF13719.6	gi|336252646|ref|YP_004595753.1|	-	0.13	12.0	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
MS_channel	PF00924.18	gi|336252647|ref|YP_004595754.1|	-	2.2	7.8	10.2	2.4	7.6	10.2	1.0	1	0	0	1	1	1	0	Mechanosensitive	ion	channel
DUF460	PF04312.13	gi|336252649|ref|YP_004595756.1|	-	3.7e-51	172.5	0.4	1.6e-50	170.5	0.1	2.2	3	0	0	3	3	2	1	Protein	of	unknown	function	(DUF460)
acVLRF1	PF18859.1	gi|336252649|ref|YP_004595756.1|	-	0.00036	20.8	2.1	0.00036	20.8	2.1	4.3	3	1	1	4	4	3	1	Actinobacteria/chloroflexi	VLRF1	release	factor
FPP	PF05911.11	gi|336252649|ref|YP_004595756.1|	-	0.001	17.4	11.1	0.0014	16.9	11.1	1.1	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
MAD	PF05557.13	gi|336252649|ref|YP_004595756.1|	-	0.0018	16.7	20.4	0.0032	15.9	20.4	1.3	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
Exonuc_VII_L	PF02601.15	gi|336252649|ref|YP_004595756.1|	-	0.0032	17.1	5.2	0.0062	16.1	5.2	1.5	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
DUF5082	PF16888.5	gi|336252649|ref|YP_004595756.1|	-	0.0037	17.5	6.4	0.53	10.6	1.5	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF5082)
HMMR_N	PF15905.5	gi|336252649|ref|YP_004595756.1|	-	0.0049	16.4	19.6	0.0089	15.5	19.6	1.3	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
DUF812	PF05667.11	gi|336252649|ref|YP_004595756.1|	-	0.0051	15.8	11.0	0.01	14.8	11.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
DUF4407	PF14362.6	gi|336252649|ref|YP_004595756.1|	-	0.0053	16.2	12.3	0.012	14.9	12.3	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
DUF4094	PF13334.6	gi|336252649|ref|YP_004595756.1|	-	0.02	15.3	2.4	0.02	15.3	2.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4094)
FAM76	PF16046.5	gi|336252649|ref|YP_004595756.1|	-	0.064	12.6	8.4	0.1	12.0	8.4	1.2	1	0	0	1	1	1	0	FAM76	protein
BtrH_N	PF14399.6	gi|336252649|ref|YP_004595756.1|	-	0.085	13.1	0.1	9.9	6.4	0.0	3.2	2	1	1	3	3	3	0	Butirosin	biosynthesis	protein	H,	N-terminal
Prefoldin	PF02996.17	gi|336252649|ref|YP_004595756.1|	-	0.085	12.8	7.7	0.4	10.6	2.9	2.5	2	0	0	2	2	2	0	Prefoldin	subunit
HOOK	PF05622.12	gi|336252649|ref|YP_004595756.1|	-	0.17	10.0	23.1	0.42	8.7	22.9	1.6	1	1	1	2	2	2	0	HOOK	protein
YPEB	PF14620.6	gi|336252649|ref|YP_004595756.1|	-	0.17	11.2	6.0	0.3	10.4	6.0	1.3	1	0	0	1	1	1	0	YpeB	sporulation
AAA_13	PF13166.6	gi|336252649|ref|YP_004595756.1|	-	0.21	10.2	7.0	0.35	9.5	7.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF1664	PF07889.12	gi|336252649|ref|YP_004595756.1|	-	0.22	11.6	11.0	0.38	10.8	7.1	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Atg14	PF10186.9	gi|336252649|ref|YP_004595756.1|	-	0.3	10.1	14.9	0.5	9.4	14.9	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF2968	PF11180.8	gi|336252649|ref|YP_004595756.1|	-	0.36	10.5	16.5	0.092	12.4	12.7	1.9	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF2968)
Fungal_TACC	PF12709.7	gi|336252649|ref|YP_004595756.1|	-	0.38	11.2	11.8	1.3	9.5	2.1	2.6	1	1	1	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF724	PF05266.14	gi|336252649|ref|YP_004595756.1|	-	0.4	10.5	12.4	0.92	9.3	12.4	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF948	PF06103.11	gi|336252649|ref|YP_004595756.1|	-	0.49	10.7	2.1	1.6	9.0	0.9	2.4	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
NPV_P10	PF05531.12	gi|336252649|ref|YP_004595756.1|	-	0.51	10.8	3.7	1.5	9.3	1.4	2.7	2	1	1	3	3	2	0	Nucleopolyhedrovirus	P10	protein
Herpes_UL6	PF01763.16	gi|336252649|ref|YP_004595756.1|	-	0.53	8.7	4.4	0.82	8.1	4.4	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
FlaC_arch	PF05377.11	gi|336252649|ref|YP_004595756.1|	-	0.72	10.3	12.3	1.8	9.0	2.8	3.0	3	0	0	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
FapA	PF03961.13	gi|336252649|ref|YP_004595756.1|	-	1.1	7.8	7.7	2.1	6.9	7.7	1.4	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
CENP-F_leu_zip	PF10473.9	gi|336252649|ref|YP_004595756.1|	-	1.2	9.2	26.9	1.6	8.7	4.4	3.0	2	1	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Lectin_N	PF03954.14	gi|336252649|ref|YP_004595756.1|	-	1.2	8.9	4.4	7.6	6.3	1.1	2.7	3	0	0	3	3	3	0	Hepatic	lectin,	N-terminal	domain
BLOC1_2	PF10046.9	gi|336252649|ref|YP_004595756.1|	-	1.2	9.4	9.9	1.2	9.5	3.8	2.7	1	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF641	PF04859.12	gi|336252649|ref|YP_004595756.1|	-	1.3	9.4	16.9	0.18	12.1	7.0	2.7	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
TMF_DNA_bd	PF12329.8	gi|336252649|ref|YP_004595756.1|	-	1.3	9.0	28.1	0.24	11.4	12.1	3.3	3	1	1	4	4	2	0	TATA	element	modulatory	factor	1	DNA	binding
FlaG	PF03646.15	gi|336252649|ref|YP_004595756.1|	-	1.5	9.1	10.0	1.2	9.3	1.8	2.7	2	0	0	2	2	2	0	FlaG	protein
Spc7	PF08317.11	gi|336252649|ref|YP_004595756.1|	-	1.7	7.5	22.2	6.2	5.6	22.1	1.9	1	1	0	1	1	1	0	Spc7	kinetochore	protein
V_ATPase_I	PF01496.19	gi|336252649|ref|YP_004595756.1|	-	1.9	6.3	8.5	2.8	5.7	8.5	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
UPF0242	PF06785.11	gi|336252649|ref|YP_004595756.1|	-	2.5	8.2	19.4	5.2	7.1	19.4	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_1	PF00170.21	gi|336252649|ref|YP_004595756.1|	-	2.8	8.1	19.3	1.4	9.1	1.0	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
BRE1	PF08647.11	gi|336252649|ref|YP_004595756.1|	-	3.3	7.8	18.0	14	5.8	7.8	2.5	1	1	1	2	2	2	0	BRE1	E3	ubiquitin	ligase
HeLo	PF14479.6	gi|336252649|ref|YP_004595756.1|	-	4.8	7.0	9.7	10	5.9	9.7	1.5	1	0	0	1	1	1	0	Prion-inhibition	and	propagation
FlxA	PF14282.6	gi|336252649|ref|YP_004595756.1|	-	4.9	7.2	6.4	13	5.8	5.6	1.9	1	1	1	2	2	2	0	FlxA-like	protein
SlyX	PF04102.12	gi|336252649|ref|YP_004595756.1|	-	5.3	7.7	13.2	2.5	8.8	5.5	3.0	1	1	2	3	3	3	0	SlyX
DASH_Spc19	PF08287.11	gi|336252649|ref|YP_004595756.1|	-	5.3	6.9	18.5	14	5.5	18.5	1.8	1	0	0	1	1	1	0	Spc19
XhlA	PF10779.9	gi|336252649|ref|YP_004595756.1|	-	6	7.2	17.1	2.4	8.4	5.1	3.2	3	0	0	3	3	2	0	Haemolysin	XhlA
TRAF_BIRC3_bd	PF16673.5	gi|336252649|ref|YP_004595756.1|	-	6.1	6.7	18.0	0.76	9.6	4.2	3.1	2	0	0	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
CorA	PF01544.18	gi|336252649|ref|YP_004595756.1|	-	6.5	6.0	8.8	19	4.5	8.7	1.7	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Laminin_II	PF06009.12	gi|336252649|ref|YP_004595756.1|	-	6.5	6.8	9.2	9.1	6.3	4.3	2.5	1	1	1	2	2	2	0	Laminin	Domain	II
Fib_alpha	PF08702.10	gi|336252649|ref|YP_004595756.1|	-	7.7	6.7	8.0	4.1	7.6	3.4	2.2	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
TMF_TATA_bd	PF12325.8	gi|336252649|ref|YP_004595756.1|	-	9.1	6.5	29.3	0.39	11.0	6.3	2.9	2	1	1	3	3	2	0	TATA	element	modulatory	factor	1	TATA	binding
Tropomyosin_1	PF12718.7	gi|336252649|ref|YP_004595756.1|	-	9.2	6.4	31.9	23	5.1	27.5	3.1	2	1	0	2	2	2	0	Tropomyosin	like
DUF5113	PF17140.4	gi|336252650|ref|YP_004595757.1|	-	0.14	12.0	0.0	0.18	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5113)
Aldo_ket_red	PF00248.21	gi|336252651|ref|YP_004595758.1|	-	3.9e-73	246.2	0.0	4.4e-73	246.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_5	PF07878.11	gi|336252651|ref|YP_004595758.1|	-	0.016	15.1	0.1	0.039	13.8	0.1	1.7	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
Lactamase_B_2	PF12706.7	gi|336252652|ref|YP_004595759.1|	-	6.1e-20	71.6	2.9	2.6e-17	63.0	2.9	2.2	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336252652|ref|YP_004595759.1|	-	9.7e-13	48.6	6.1	1.9e-11	44.3	1.1	2.2	1	1	1	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|336252652|ref|YP_004595759.1|	-	0.022	14.4	0.0	0.042	13.5	0.0	1.4	1	0	0	1	1	1	0	tRNase	Z	endonuclease
Transglut_C	PF00927.22	gi|336252653|ref|YP_004595760.1|	-	0.14	12.3	0.2	0.6	10.3	0.0	2.1	2	0	0	2	2	2	0	Transglutaminase	family,	C-terminal	ig	like	domain
fn3_5	PF06280.12	gi|336252653|ref|YP_004595760.1|	-	0.18	12.5	9.8	3.1	8.5	2.7	3.5	1	1	2	3	3	3	0	Fn3-like	domain
AAA	PF00004.29	gi|336252654|ref|YP_004595761.1|	-	7e-14	52.4	0.1	3.1e-13	50.3	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|336252654|ref|YP_004595761.1|	-	2.9e-12	46.7	0.0	5.3e-12	45.8	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rep_fac_C	PF08542.11	gi|336252654|ref|YP_004595761.1|	-	4e-11	43.2	0.3	9.6e-11	42.0	0.1	1.7	2	0	0	2	2	1	1	Replication	factor	C	C-terminal	domain
AAA_22	PF13401.6	gi|336252654|ref|YP_004595761.1|	-	9.5e-08	32.4	0.0	2.6e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336252654|ref|YP_004595761.1|	-	2.8e-06	27.8	0.3	5.5e-05	23.6	0.0	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|336252654|ref|YP_004595761.1|	-	1.5e-05	25.5	0.0	4.8e-05	23.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|336252654|ref|YP_004595761.1|	-	1.6e-05	24.6	0.0	0.00054	19.7	0.0	2.6	3	0	0	3	3	3	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|336252654|ref|YP_004595761.1|	-	0.0001	21.8	0.0	0.00017	21.0	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|336252654|ref|YP_004595761.1|	-	0.00015	21.8	2.0	0.0014	18.6	0.4	2.8	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|336252654|ref|YP_004595761.1|	-	0.00022	21.2	0.0	0.00064	19.7	0.0	1.9	1	1	0	1	1	1	1	NACHT	domain
AAA_19	PF13245.6	gi|336252654|ref|YP_004595761.1|	-	0.00044	20.6	0.1	0.003	17.9	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|336252654|ref|YP_004595761.1|	-	0.00045	20.1	0.0	0.0012	18.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|336252654|ref|YP_004595761.1|	-	0.0006	19.2	0.0	0.0033	16.7	0.0	2.0	2	0	0	2	2	2	1	Zeta	toxin
AAA_14	PF13173.6	gi|336252654|ref|YP_004595761.1|	-	0.0007	19.6	0.0	0.0019	18.2	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|336252654|ref|YP_004595761.1|	-	0.0008	19.2	0.0	0.0013	18.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|336252654|ref|YP_004595761.1|	-	0.0019	18.3	0.0	0.012	15.8	0.0	1.9	2	0	0	2	2	2	1	Sigma-54	interaction	domain
T2SSE	PF00437.20	gi|336252654|ref|YP_004595761.1|	-	0.0026	16.8	0.0	0.0062	15.6	0.0	1.6	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
His_Phos_1	PF00300.22	gi|336252654|ref|YP_004595761.1|	-	0.0079	15.9	0.2	0.25	11.0	0.0	2.4	1	1	1	2	2	2	1	Histidine	phosphatase	superfamily	(branch	1)
Rad17	PF03215.15	gi|336252654|ref|YP_004595761.1|	-	0.008	16.1	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
IstB_IS21	PF01695.17	gi|336252654|ref|YP_004595761.1|	-	0.0094	15.7	0.0	0.026	14.3	0.0	1.7	2	0	0	2	2	1	1	IstB-like	ATP	binding	protein
AAA_2	PF07724.14	gi|336252654|ref|YP_004595761.1|	-	0.0098	16.0	0.0	0.022	14.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
Bac_DnaA	PF00308.18	gi|336252654|ref|YP_004595761.1|	-	0.015	15.2	0.2	0.086	12.7	0.0	2.2	3	0	0	3	3	2	0	Bacterial	dnaA	protein
AAA_33	PF13671.6	gi|336252654|ref|YP_004595761.1|	-	0.015	15.4	0.0	0.03	14.5	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
RuvB_N	PF05496.12	gi|336252654|ref|YP_004595761.1|	-	0.024	14.4	0.2	0.091	12.5	0.0	2.0	3	0	0	3	3	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TIP49	PF06068.13	gi|336252654|ref|YP_004595761.1|	-	0.046	12.9	0.0	0.073	12.3	0.0	1.2	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_30	PF13604.6	gi|336252654|ref|YP_004595761.1|	-	0.054	13.2	0.0	0.11	12.2	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Lipoprotein_16	PF03923.13	gi|336252654|ref|YP_004595761.1|	-	0.061	13.0	0.0	6.9	6.3	0.0	2.6	2	0	0	2	2	2	0	Uncharacterized	lipoprotein
AAA_25	PF13481.6	gi|336252654|ref|YP_004595761.1|	-	0.072	12.7	0.0	3.1	7.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Metal_resist	PF13801.6	gi|336252654|ref|YP_004595761.1|	-	0.075	13.2	0.3	0.075	13.2	0.3	2.9	3	0	0	3	3	3	0	Heavy-metal	resistance
DEAD	PF00270.29	gi|336252654|ref|YP_004595761.1|	-	0.091	12.5	0.2	6.3	6.5	0.0	2.3	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
TsaE	PF02367.17	gi|336252654|ref|YP_004595761.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_7	PF12775.7	gi|336252654|ref|YP_004595761.1|	-	0.16	11.4	0.0	0.54	9.7	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
4HBT	PF03061.22	gi|336252655|ref|YP_004595762.1|	-	4e-18	65.6	0.0	6.1e-18	64.9	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_2	PF13279.6	gi|336252655|ref|YP_004595762.1|	-	0.15	12.6	0.0	0.18	12.3	0.0	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
TrmB	PF01978.19	gi|336252656|ref|YP_004595763.1|	-	9.2e-17	60.7	0.0	2.8e-16	59.2	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|336252656|ref|YP_004595763.1|	-	5.9e-09	35.4	0.0	8.4e-09	34.9	0.0	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HRDC	PF00570.23	gi|336252656|ref|YP_004595763.1|	-	0.0089	16.0	0.1	4.3	7.4	0.0	3.2	3	0	0	3	3	3	1	HRDC	domain
Radical_SAM	PF04055.21	gi|336252656|ref|YP_004595763.1|	-	0.0098	16.3	0.4	0.79	10.1	0.1	2.3	1	1	1	2	2	2	1	Radical	SAM	superfamily
HTH_27	PF13463.6	gi|336252656|ref|YP_004595763.1|	-	0.013	16.0	1.2	0.26	11.8	0.1	3.2	2	1	2	4	4	4	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|336252656|ref|YP_004595763.1|	-	0.019	14.8	0.1	0.053	13.4	0.1	1.8	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.10	gi|336252656|ref|YP_004595763.1|	-	0.042	13.7	0.2	2.8	7.8	0.0	2.7	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
UPF0020	PF01170.18	gi|336252657|ref|YP_004595764.1|	-	8.2e-21	74.6	0.1	6.3e-20	71.7	0.1	2.2	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.6	gi|336252657|ref|YP_004595764.1|	-	6.1e-06	26.9	0.0	1.5e-05	25.6	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
THUMP	PF02926.17	gi|336252657|ref|YP_004595764.1|	-	1.8e-05	24.8	0.0	8e-05	22.8	0.0	1.9	1	1	0	1	1	1	1	THUMP	domain
Methyltransf_11	PF08241.12	gi|336252657|ref|YP_004595764.1|	-	0.00016	22.2	0.0	0.00043	20.9	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
AviRa	PF11599.8	gi|336252657|ref|YP_004595764.1|	-	0.00087	18.8	0.0	0.45	9.9	0.0	2.2	2	0	0	2	2	2	2	RRNA	methyltransferase	AviRa
Methyltransf_23	PF13489.6	gi|336252657|ref|YP_004595764.1|	-	0.033	14.0	0.0	0.4	10.5	0.0	2.3	2	1	0	2	2	2	0	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|336252657|ref|YP_004595764.1|	-	0.16	11.5	0.0	0.24	10.9	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
N6_Mtase	PF02384.16	gi|336252657|ref|YP_004595764.1|	-	0.24	10.6	0.0	0.38	10.0	0.0	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
TBP	PF00352.21	gi|336252658|ref|YP_004595765.1|	-	4.8e-58	193.1	0.0	5.1e-28	96.9	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
T4bSS_IcmS	PF12608.8	gi|336252658|ref|YP_004595765.1|	-	1.2e-05	25.5	0.0	0.01	16.1	0.0	2.2	2	0	0	2	2	2	2	Type	IVb	secretion,	IcmS,	effector-recruitment
DUF3378	PF11858.8	gi|336252658|ref|YP_004595765.1|	-	0.00025	21.1	0.0	0.69	10.1	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Ribosomal_S30AE	PF02482.19	gi|336252658|ref|YP_004595765.1|	-	0.11	13.2	0.0	12	6.8	0.0	2.2	2	0	0	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
Ion_trans_2	PF07885.16	gi|336252659|ref|YP_004595766.1|	-	4.3e-05	23.4	8.7	4.3e-05	23.4	8.7	1.8	2	0	0	2	2	2	1	Ion	channel
Cation_ATPase_C	PF00689.21	gi|336252659|ref|YP_004595766.1|	-	0.053	13.2	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
MarR	PF01047.22	gi|336252660|ref|YP_004595767.1|	-	3.2e-06	27.0	0.0	4.3e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336252660|ref|YP_004595767.1|	-	6.3e-06	26.0	0.0	7.3e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|336252660|ref|YP_004595767.1|	-	6.8e-05	23.0	0.0	0.00011	22.3	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|336252660|ref|YP_004595767.1|	-	0.0049	16.6	0.5	0.011	15.6	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336252660|ref|YP_004595767.1|	-	0.0062	16.5	0.0	0.0075	16.2	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|336252660|ref|YP_004595767.1|	-	0.064	12.8	0.0	0.091	12.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HisG	PF01634.18	gi|336252662|ref|YP_004595769.1|	-	2.7e-49	167.2	0.2	3.9e-49	166.7	0.2	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|336252662|ref|YP_004595769.1|	-	2.2e-25	88.6	0.1	5.2e-25	87.4	0.1	1.7	1	0	0	1	1	1	1	HisG,	C-terminal	domain
NMT1	PF09084.11	gi|336252662|ref|YP_004595769.1|	-	0.00027	21.0	0.0	0.0024	17.9	0.0	2.2	2	1	0	2	2	2	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|336252662|ref|YP_004595769.1|	-	0.016	14.8	0.1	0.058	13.0	0.0	2.0	2	0	0	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
LysR_substrate	PF03466.20	gi|336252662|ref|YP_004595769.1|	-	0.033	13.5	0.2	0.054	12.9	0.2	1.3	1	0	0	1	1	1	0	LysR	substrate	binding	domain
DUF1281	PF06924.11	gi|336252663|ref|YP_004595770.1|	-	0.11	12.1	0.1	0.26	10.8	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1281)
E1-E2_ATPase	PF00122.20	gi|336252664|ref|YP_004595771.1|	-	1.9e-48	164.4	5.1	3.9e-48	163.4	1.3	2.5	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336252664|ref|YP_004595771.1|	-	1.4e-43	149.7	6.1	2.7e-43	148.7	6.1	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|336252664|ref|YP_004595771.1|	-	0.00011	22.1	0.0	0.0015	18.3	0.0	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336252664|ref|YP_004595771.1|	-	0.0022	18.4	1.2	0.0051	17.2	0.3	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DUF1198	PF06711.11	gi|336252664|ref|YP_004595771.1|	-	0.12	12.5	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1198)
DUF2796	PF10986.8	gi|336252664|ref|YP_004595771.1|	-	0.14	12.1	0.8	0.24	11.3	0.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2796)
DUF1980	PF09323.10	gi|336252664|ref|YP_004595771.1|	-	0.23	11.4	0.1	36	4.2	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1980)
ATPase	PF06745.13	gi|336252665|ref|YP_004595772.1|	-	2e-45	155.0	0.0	2.2e-45	154.8	0.0	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|336252665|ref|YP_004595772.1|	-	3.9e-08	32.4	0.1	9.9e-07	27.7	0.1	2.9	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|336252665|ref|YP_004595772.1|	-	8.6e-07	28.5	0.0	1.3e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|336252665|ref|YP_004595772.1|	-	5.1e-06	26.2	0.0	1.1e-05	25.1	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|336252665|ref|YP_004595772.1|	-	0.00044	20.4	0.0	0.0011	19.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|336252665|ref|YP_004595772.1|	-	0.0017	18.6	0.0	0.0039	17.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|336252665|ref|YP_004595772.1|	-	0.0018	18.7	0.3	0.016	15.7	0.3	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|336252665|ref|YP_004595772.1|	-	0.0024	17.9	0.0	0.012	15.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|336252665|ref|YP_004595772.1|	-	0.0028	17.4	0.0	0.0065	16.2	0.0	1.6	1	1	1	2	2	2	1	AAA	domain
MEDS	PF14417.6	gi|336252665|ref|YP_004595772.1|	-	0.0041	17.0	0.0	0.0069	16.2	0.0	1.4	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_16	PF13191.6	gi|336252665|ref|YP_004595772.1|	-	0.0043	17.5	0.0	0.0073	16.7	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad51	PF08423.11	gi|336252665|ref|YP_004595772.1|	-	0.0087	15.4	0.1	0.02	14.2	0.0	1.6	2	0	0	2	2	2	1	Rad51
ATP_bind_1	PF03029.17	gi|336252665|ref|YP_004595772.1|	-	0.01	15.6	0.4	0.027	14.3	0.1	1.9	2	1	1	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
ATPase_2	PF01637.18	gi|336252665|ref|YP_004595772.1|	-	0.011	15.7	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|336252665|ref|YP_004595772.1|	-	0.015	15.9	0.1	0.022	15.3	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|336252665|ref|YP_004595772.1|	-	0.039	13.9	0.0	0.065	13.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_30	PF13604.6	gi|336252665|ref|YP_004595772.1|	-	0.041	13.6	0.0	0.087	12.5	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|336252665|ref|YP_004595772.1|	-	0.043	12.9	0.0	0.069	12.2	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RecA	PF00154.21	gi|336252665|ref|YP_004595772.1|	-	0.049	13.1	0.2	0.63	9.5	0.0	2.3	3	0	0	3	3	2	0	recA	bacterial	DNA	recombination	protein
cobW	PF02492.19	gi|336252665|ref|YP_004595772.1|	-	0.051	13.2	0.1	0.13	11.8	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF835	PF05763.12	gi|336252665|ref|YP_004595772.1|	-	0.053	13.3	0.0	0.078	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF835)
AAA_28	PF13521.6	gi|336252665|ref|YP_004595772.1|	-	0.056	13.7	0.0	0.41	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.6	gi|336252665|ref|YP_004595772.1|	-	0.091	13.2	0.2	0.19	12.2	0.2	1.5	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|336252665|ref|YP_004595772.1|	-	0.098	12.4	0.0	0.23	11.2	0.0	1.6	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
NTPase_1	PF03266.15	gi|336252665|ref|YP_004595772.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	NTPase
AAA_11	PF13086.6	gi|336252665|ref|YP_004595772.1|	-	0.12	12.1	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|336252665|ref|YP_004595772.1|	-	0.13	12.7	0.0	0.21	12.0	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|336252665|ref|YP_004595772.1|	-	0.17	11.1	0.0	0.3	10.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|336252665|ref|YP_004595772.1|	-	0.17	11.6	0.0	0.33	10.7	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.12	gi|336252665|ref|YP_004595772.1|	-	0.18	11.1	0.0	0.68	9.2	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
DUF716	PF04819.12	gi|336252667|ref|YP_004595774.1|	-	0.13	11.9	0.8	0.18	11.5	0.8	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF716)
PalH	PF08733.10	gi|336252667|ref|YP_004595774.1|	-	1.2	8.1	3.2	1.5	7.7	3.2	1.1	1	0	0	1	1	1	0	PalH/RIM21
SpoIIM	PF01944.17	gi|336252668|ref|YP_004595775.1|	-	2.2e-26	92.7	17.7	2.2e-26	92.7	17.7	1.9	2	0	0	2	2	2	1	Stage	II	sporulation	protein	M
Amidohydro_1	PF01979.20	gi|336252669|ref|YP_004595776.1|	-	1.2e-64	218.9	3.6	1.4e-64	218.6	3.6	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|336252669|ref|YP_004595776.1|	-	1.2e-24	87.7	17.1	1.8e-18	67.3	13.4	2.9	1	1	1	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|336252669|ref|YP_004595776.1|	-	0.00019	20.9	0.0	0.00039	19.8	0.0	1.5	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
CYTH	PF01928.21	gi|336252669|ref|YP_004595776.1|	-	0.0028	17.6	0.0	0.0059	16.6	0.0	1.6	1	0	0	1	1	1	1	CYTH	domain
Invasin_D3	PF09134.10	gi|336252670|ref|YP_004595777.1|	-	0.00078	19.7	14.3	0.0013	19.0	14.3	1.4	1	0	0	1	1	1	1	Invasin,	domain	3
DUF824	PF05688.11	gi|336252670|ref|YP_004595777.1|	-	0.0029	17.4	0.6	0.0085	15.9	0.6	1.8	1	0	0	1	1	1	1	Salmonella	repeat	of	unknown	function	(DUF824)
CarboxypepD_reg	PF13620.6	gi|336252670|ref|YP_004595777.1|	-	0.006	16.8	6.6	0.016	15.5	6.6	1.7	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
MG4	PF17789.1	gi|336252670|ref|YP_004595777.1|	-	0.019	15.1	0.9	0.033	14.3	0.9	1.3	1	0	0	1	1	1	0	Macroglobulin	domain	MG4
YtkA	PF13115.6	gi|336252670|ref|YP_004595777.1|	-	0.2	12.3	2.4	0.34	11.6	1.6	1.8	1	1	0	1	1	1	0	YtkA-like
DUF4179	PF13786.6	gi|336252670|ref|YP_004595777.1|	-	0.69	10.4	3.6	0.63	10.5	1.9	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
AdoHcyase	PF05221.17	gi|336252671|ref|YP_004595778.1|	-	1.1e-51	175.8	0.0	6.1e-27	94.5	0.4	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|336252671|ref|YP_004595778.1|	-	7.5e-48	162.6	1.1	1.7e-47	161.5	0.4	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336252671|ref|YP_004595778.1|	-	6.4e-10	38.7	0.1	1.2e-09	37.8	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336252671|ref|YP_004595778.1|	-	4.9e-06	26.2	0.1	1.3e-05	24.9	0.1	1.7	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|336252671|ref|YP_004595778.1|	-	0.015	15.5	0.1	0.035	14.3	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Shikimate_DH	PF01488.20	gi|336252671|ref|YP_004595778.1|	-	0.019	15.0	0.0	0.038	14.1	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
MG2	PF01835.19	gi|336252672|ref|YP_004595779.1|	-	0.082	13.4	0.0	0.72	10.3	0.0	2.1	1	1	0	2	2	2	0	MG2	domain
PAS_4	PF08448.10	gi|336252673|ref|YP_004595780.1|	-	6e-11	42.6	0.3	1.9e-10	40.9	0.3	1.8	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|336252673|ref|YP_004595780.1|	-	4.4e-09	36.5	0.0	7.9e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|336252673|ref|YP_004595780.1|	-	0.0042	17.4	0.0	0.0069	16.7	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
Response_reg	PF00072.24	gi|336252673|ref|YP_004595780.1|	-	0.074	13.2	0.0	0.18	11.9	0.0	1.7	2	0	0	2	2	2	0	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.15	gi|336252673|ref|YP_004595780.1|	-	0.11	12.7	0.0	0.23	11.7	0.0	1.5	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS	PF00989.25	gi|336252673|ref|YP_004595780.1|	-	0.14	12.1	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	PAS	fold
HEAT_2	PF13646.6	gi|336252673|ref|YP_004595780.1|	-	1.4	9.4	8.2	0.72	10.3	0.4	3.1	1	1	0	2	2	2	0	HEAT	repeats
HalOD1	PF18545.1	gi|336252674|ref|YP_004595781.1|	-	2.3e-23	82.2	0.4	2.8e-23	82.0	0.4	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
PAS_3	PF08447.12	gi|336252675|ref|YP_004595782.1|	-	3e-66	219.7	10.0	3.1e-20	72.3	0.1	7.1	7	0	0	7	7	7	6	PAS	fold
PAS_4	PF08448.10	gi|336252675|ref|YP_004595782.1|	-	1.1e-53	180.1	32.0	7.9e-18	64.7	0.1	7.1	7	0	0	7	7	6	6	PAS	fold
PAS_9	PF13426.7	gi|336252675|ref|YP_004595782.1|	-	6.3e-52	174.2	1.1	3.5e-13	49.7	0.0	6.5	6	0	0	6	6	6	6	PAS	domain
BAT	PF15915.5	gi|336252675|ref|YP_004595782.1|	-	1.4e-51	174.5	18.8	1.4e-51	174.5	18.8	3.9	3	0	0	3	3	2	1	GAF	and	HTH_10	associated	domain
PAS	PF00989.25	gi|336252675|ref|YP_004595782.1|	-	1.6e-46	157.0	4.1	1.2e-19	70.3	0.0	6.0	6	0	0	6	6	6	4	PAS	fold
PAS_8	PF13188.7	gi|336252675|ref|YP_004595782.1|	-	5.5e-23	80.5	5.7	5.7e-10	39.0	0.1	4.9	4	0	0	4	4	4	3	PAS	domain
GAF_2	PF13185.6	gi|336252675|ref|YP_004595782.1|	-	9.2e-23	81.1	15.2	2.9e-15	56.8	0.6	5.8	5	0	0	5	5	5	2	GAF	domain
HTH_10	PF04967.12	gi|336252675|ref|YP_004595782.1|	-	2.4e-16	59.3	0.0	5.9e-16	58.0	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_3	PF13492.6	gi|336252675|ref|YP_004595782.1|	-	3.8e-09	37.0	0.0	0.001	19.4	0.0	4.8	4	0	0	4	4	4	1	GAF	domain
GAF	PF01590.26	gi|336252675|ref|YP_004595782.1|	-	4e-08	34.0	0.0	0.082	13.5	0.0	4.6	4	0	0	4	4	4	2	GAF	domain
PAS_7	PF12860.7	gi|336252675|ref|YP_004595782.1|	-	3.8e-06	27.1	8.9	1.6	8.9	0.1	7.8	6	2	0	6	6	6	1	PAS	fold
PAS_10	PF13596.6	gi|336252675|ref|YP_004595782.1|	-	3.6e-05	24.3	0.0	0.0002	21.9	0.0	2.4	2	0	0	2	2	2	1	PAS	domain
PAS_11	PF14598.6	gi|336252675|ref|YP_004595782.1|	-	7.5e-05	22.8	0.0	0.055	13.6	0.0	3.2	3	0	0	3	3	3	1	PAS	domain
dCache_1	PF02743.18	gi|336252675|ref|YP_004595782.1|	-	0.00062	19.6	0.3	2.8	7.7	0.0	4.0	3	1	2	5	5	4	2	Cache	domain
Sigma70_r4	PF04545.16	gi|336252675|ref|YP_004595782.1|	-	0.0013	18.2	0.2	0.0053	16.2	0.2	2.1	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF2111	PF09884.9	gi|336252675|ref|YP_004595782.1|	-	0.019	15.0	0.0	0.051	13.6	0.0	1.7	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2111)
Sigma70_ECF	PF07638.11	gi|336252675|ref|YP_004595782.1|	-	0.022	14.7	2.2	0.027	14.4	0.2	2.3	2	0	0	2	2	1	0	ECF	sigma	factor
HTH_1	PF00126.27	gi|336252675|ref|YP_004595782.1|	-	0.025	14.5	0.2	0.088	12.8	0.2	2.0	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.12	gi|336252675|ref|YP_004595782.1|	-	0.068	12.8	0.7	0.31	10.7	0.0	2.7	2	1	0	2	2	1	0	Sigma-70,	region	4
HTH_5	PF01022.20	gi|336252675|ref|YP_004595782.1|	-	0.14	12.0	0.0	0.38	10.6	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF4051	PF13260.6	gi|336252675|ref|YP_004595782.1|	-	0.2	11.4	1.2	0.52	10.1	1.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4051)
Trypan_PARP	PF05887.11	gi|336252675|ref|YP_004595782.1|	-	2.8	7.9	12.6	0.12	12.3	5.3	2.4	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
CPBP	PF02517.16	gi|336252676|ref|YP_004595783.1|	-	1.8e-16	60.2	4.5	1.8e-16	60.2	4.5	2.7	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
EI24	PF07264.11	gi|336252676|ref|YP_004595783.1|	-	0.29	11.4	13.6	0.56	10.4	13.4	1.6	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
PDR_CDR	PF06422.12	gi|336252676|ref|YP_004595783.1|	-	0.46	10.4	0.1	0.46	10.4	0.1	2.2	2	1	0	2	2	2	0	CDR	ABC	transporter
Hjc	PF01870.18	gi|336252677|ref|YP_004595784.1|	-	1e-30	105.6	0.0	1.4e-30	105.1	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
NHL	PF01436.21	gi|336252677|ref|YP_004595784.1|	-	0.15	12.2	0.0	0.31	11.1	0.0	1.5	1	0	0	1	1	1	0	NHL	repeat
SWIM	PF04434.17	gi|336252679|ref|YP_004595786.1|	-	0.00021	20.9	0.7	0.00034	20.2	0.0	1.7	2	0	0	2	2	2	1	SWIM	zinc	finger
DUF3341	PF11821.8	gi|336252680|ref|YP_004595787.1|	-	3.8e-05	23.4	0.3	4.2e-05	23.2	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3341)
PQQ_2	PF13360.6	gi|336252682|ref|YP_004595789.1|	-	1.4e-41	142.7	13.8	3.3e-21	76.0	3.7	3.1	1	1	1	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|336252682|ref|YP_004595789.1|	-	1.7e-41	139.7	36.0	2.4e-08	34.2	0.1	8.2	8	0	0	8	8	8	8	PQQ-like	domain
PQQ	PF01011.21	gi|336252682|ref|YP_004595789.1|	-	6.3e-22	76.4	14.1	5.3e-07	29.3	0.0	8.1	9	0	0	9	9	9	5	PQQ	enzyme	repeat
ANAPC4_WD40	PF12894.7	gi|336252682|ref|YP_004595789.1|	-	0.015	15.6	0.0	0.61	10.4	0.0	3.2	3	1	0	3	3	3	0	Anaphase-promoting	complex	subunit	4	WD40	domain
Rad51	PF08423.11	gi|336252683|ref|YP_004595790.1|	-	9.1e-75	251.2	0.1	8e-74	248.1	0.1	1.9	1	1	0	1	1	1	1	Rad51
HHH_5	PF14520.6	gi|336252683|ref|YP_004595790.1|	-	2.4e-11	44.1	0.0	8.2e-11	42.3	0.0	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|336252683|ref|YP_004595790.1|	-	3.2e-08	33.4	0.0	0.0069	15.9	0.0	2.2	1	1	1	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH	PF00633.23	gi|336252683|ref|YP_004595790.1|	-	3.3e-07	29.8	1.9	0.0027	17.5	0.2	2.9	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|336252683|ref|YP_004595790.1|	-	1e-06	28.7	0.1	4e-06	26.8	0.0	2.1	2	0	0	2	2	1	1	Helix-hairpin-helix	motif
AAA_25	PF13481.6	gi|336252683|ref|YP_004595790.1|	-	3e-06	26.9	0.1	6.3e-06	25.9	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Cdd1	PF11731.8	gi|336252683|ref|YP_004595790.1|	-	3.4e-05	24.0	0.0	0.0001	22.4	0.0	1.8	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase	PF06745.13	gi|336252683|ref|YP_004595790.1|	-	0.00029	20.3	0.3	0.0014	18.0	0.1	2.0	2	1	0	2	2	2	1	KaiC
DNA_pol_lambd_f	PF10391.9	gi|336252683|ref|YP_004595790.1|	-	0.0004	20.1	0.0	0.0024	17.7	0.0	2.3	1	1	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_3	PF12836.7	gi|336252683|ref|YP_004595790.1|	-	0.0055	16.9	0.0	2.6	8.4	0.0	2.9	2	1	1	3	3	3	1	Helix-hairpin-helix	motif
DUF4332	PF14229.6	gi|336252683|ref|YP_004595790.1|	-	0.0071	16.6	0.0	0.019	15.2	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
AAA_22	PF13401.6	gi|336252683|ref|YP_004595790.1|	-	0.017	15.4	0.4	0.072	13.4	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
IMS_HHH	PF11798.8	gi|336252683|ref|YP_004595790.1|	-	0.031	14.6	0.0	0.15	12.4	0.0	2.2	2	0	0	2	2	2	0	IMS	family	HHH	motif
BAF	PF02961.14	gi|336252683|ref|YP_004595790.1|	-	0.067	13.6	0.0	0.19	12.2	0.0	1.8	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
DUF2520	PF10728.9	gi|336252683|ref|YP_004595790.1|	-	0.11	12.3	0.6	0.34	10.7	0.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2520)
ATPase_2	PF01637.18	gi|336252683|ref|YP_004595790.1|	-	0.11	12.5	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NifU_N	PF01592.16	gi|336252685|ref|YP_004595792.1|	-	2.6e-25	89.0	0.1	3.3e-25	88.7	0.1	1.1	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
SufE	PF02657.15	gi|336252685|ref|YP_004595792.1|	-	0.039	13.8	0.0	0.055	13.3	0.0	1.2	1	0	0	1	1	1	0	Fe-S	metabolism	associated	domain
HNOB	PF07700.15	gi|336252686|ref|YP_004595793.1|	-	2.5e-36	125.1	0.0	2.9e-36	124.9	0.0	1.0	1	0	0	1	1	1	1	Haem-NO-binding
V4R	PF02830.18	gi|336252686|ref|YP_004595793.1|	-	5.4e-09	35.9	0.1	9.1e-09	35.2	0.1	1.4	1	0	0	1	1	1	1	V4R	domain
MetOD1	PF18546.1	gi|336252686|ref|YP_004595793.1|	-	0.0018	18.3	0.0	0.0027	17.7	0.0	1.3	1	0	0	1	1	1	1	Metanogen	output	domain	1
HD	PF01966.22	gi|336252688|ref|YP_004595795.1|	-	5.5e-13	49.2	3.5	1.1e-12	48.3	3.5	1.4	1	0	0	1	1	1	1	HD	domain
DUF4202	PF13875.6	gi|336252688|ref|YP_004595795.1|	-	0.074	13.0	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4202)
DUF2817	PF10994.8	gi|336252688|ref|YP_004595795.1|	-	0.15	11.4	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2817)
HTH_20	PF12840.7	gi|336252689|ref|YP_004595796.1|	-	0.061	13.4	0.1	9.4	6.4	0.1	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
Aminotran_5	PF00266.19	gi|336252690|ref|YP_004595797.1|	-	3.7e-151	503.3	0.0	4.2e-151	503.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|336252690|ref|YP_004595797.1|	-	3.4e-09	36.5	0.3	5.9e-09	35.7	0.3	1.5	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|336252690|ref|YP_004595797.1|	-	5.8e-08	32.4	0.0	6.7e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
SelA	PF03841.13	gi|336252690|ref|YP_004595797.1|	-	0.00018	20.6	0.1	0.00051	19.1	0.1	1.6	1	1	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
Cys_Met_Meta_PP	PF01053.20	gi|336252690|ref|YP_004595797.1|	-	0.0042	15.7	0.0	0.0095	14.5	0.0	1.6	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Lar_restr_allev	PF14354.6	gi|336252691|ref|YP_004595798.1|	-	0.0038	17.6	3.9	0.081	13.3	3.3	2.6	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
Mut7-C	PF01927.16	gi|336252691|ref|YP_004595798.1|	-	0.037	14.1	0.4	0.072	13.2	0.4	1.5	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
ABC_tran	PF00005.27	gi|336252692|ref|YP_004595799.1|	-	8.4e-25	87.9	0.0	1.2e-24	87.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252692|ref|YP_004595799.1|	-	7e-12	45.8	0.1	3.1e-08	33.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BAT	PF15915.5	gi|336252692|ref|YP_004595799.1|	-	0.0018	18.2	4.4	0.0031	17.4	3.4	1.9	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
DUF4162	PF13732.6	gi|336252692|ref|YP_004595799.1|	-	0.0019	18.8	0.0	0.006	17.3	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|336252692|ref|YP_004595799.1|	-	0.025	15.1	0.1	0.037	14.5	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|336252692|ref|YP_004595799.1|	-	0.034	14.1	0.0	0.057	13.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|336252692|ref|YP_004595799.1|	-	0.038	13.7	0.0	0.09	12.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|336252692|ref|YP_004595799.1|	-	0.038	14.2	0.0	0.1	12.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|336252692|ref|YP_004595799.1|	-	0.14	11.7	0.0	0.36	10.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|336252693|ref|YP_004595800.1|	-	1.6e-42	145.8	10.0	1.8e-41	142.3	10.0	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|336252693|ref|YP_004595800.1|	-	2.9e-10	40.4	11.3	3.7e-10	40.1	9.3	2.0	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336252693|ref|YP_004595800.1|	-	1.7e-06	27.4	9.8	1.7e-06	27.4	9.8	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336252693|ref|YP_004595800.1|	-	1e-05	25.1	11.2	1.7e-05	24.3	11.2	1.4	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.6	gi|336252693|ref|YP_004595800.1|	-	0.00032	20.3	8.3	0.001	18.6	8.3	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
DUF4564	PF15169.6	gi|336252693|ref|YP_004595800.1|	-	0.092	12.5	0.4	0.092	12.5	0.4	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4564)
DUF3464	PF11947.8	gi|336252693|ref|YP_004595800.1|	-	4.1	7.1	6.4	10	5.9	6.4	1.6	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
DUF424	PF04242.13	gi|336252694|ref|YP_004595801.1|	-	1.6e-30	105.2	0.3	1.7e-30	105.1	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
TPR_1	PF00515.28	gi|336252695|ref|YP_004595802.1|	-	7.1e-21	73.1	7.2	5e-05	22.9	0.0	5.8	6	0	0	6	6	6	5	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|336252695|ref|YP_004595802.1|	-	6.3e-17	60.3	15.6	0.004	17.2	0.0	5.8	6	0	0	6	6	6	5	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|336252695|ref|YP_004595802.1|	-	5.9e-14	51.0	4.0	0.014	15.5	0.3	5.3	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|336252695|ref|YP_004595802.1|	-	1e-13	51.7	13.3	1.2e-06	29.1	0.4	3.9	3	1	1	4	4	4	3	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|336252695|ref|YP_004595802.1|	-	1.2e-12	48.0	19.9	2.3e-09	37.4	4.8	4.1	3	1	0	3	3	3	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|336252695|ref|YP_004595802.1|	-	1.4e-09	37.3	11.1	0.00058	19.7	0.1	4.8	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|336252695|ref|YP_004595802.1|	-	4e-09	36.2	0.1	0.011	16.1	0.0	4.3	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|336252695|ref|YP_004595802.1|	-	7.7e-08	32.4	11.5	0.0079	16.3	0.2	4.4	1	1	3	4	4	4	4	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|336252695|ref|YP_004595802.1|	-	5.4e-07	29.3	20.9	0.004	17.0	0.7	5.2	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|336252695|ref|YP_004595802.1|	-	1.2e-06	28.8	20.8	0.002	18.8	0.9	5.2	2	1	4	6	6	5	3	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|336252695|ref|YP_004595802.1|	-	2.6e-06	27.0	3.4	0.18	11.5	0.0	4.7	2	1	3	5	5	5	2	TPR	repeat
TPR_19	PF14559.6	gi|336252695|ref|YP_004595802.1|	-	3.2e-05	24.3	10.1	0.5	10.9	0.0	4.5	2	1	2	5	5	5	2	Tetratricopeptide	repeat
TPR_4	PF07721.14	gi|336252695|ref|YP_004595802.1|	-	7.1e-05	23.1	16.3	0.013	16.1	1.8	5.7	6	0	0	6	6	5	2	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|336252695|ref|YP_004595802.1|	-	0.0003	19.8	0.2	0.00062	18.8	0.1	1.5	1	1	0	1	1	1	1	NMDA	receptor-regulated	protein	1
ANAPC3	PF12895.7	gi|336252695|ref|YP_004595802.1|	-	0.00065	19.9	1.8	0.067	13.4	0.1	2.7	1	1	0	2	2	2	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
ANAPC5	PF12862.7	gi|336252695|ref|YP_004595802.1|	-	0.0074	16.3	5.8	0.37	10.9	0.7	3.4	1	1	1	2	2	2	1	Anaphase-promoting	complex	subunit	5
TPR_6	PF13174.6	gi|336252695|ref|YP_004595802.1|	-	0.04	14.6	5.4	27	5.7	0.1	4.6	5	0	0	5	5	4	0	Tetratricopeptide	repeat
LisH	PF08513.11	gi|336252695|ref|YP_004595802.1|	-	0.097	12.7	0.4	0.4	10.7	0.1	2.1	2	0	0	2	2	2	0	LisH
SPOB_a	PF14689.6	gi|336252695|ref|YP_004595802.1|	-	0.12	12.1	1.3	14	5.5	0.0	2.7	2	0	0	2	2	2	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Acetyltransf_11	PF13720.6	gi|336252695|ref|YP_004595802.1|	-	0.14	12.6	0.3	0.41	11.1	0.3	1.8	1	0	0	1	1	1	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
TPR_20	PF14561.6	gi|336252695|ref|YP_004595802.1|	-	0.21	11.9	4.5	1.3	9.4	0.6	2.6	1	1	1	2	2	2	0	Tetratricopeptide	repeat
LigT_PEase	PF02834.16	gi|336252696|ref|YP_004595803.1|	-	4.6e-29	100.5	0.0	1.6e-15	57.0	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|336252696|ref|YP_004595803.1|	-	2.3e-20	73.0	0.1	2.6e-20	72.9	0.1	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|336252696|ref|YP_004595803.1|	-	1.7e-08	34.6	0.0	2.2e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|336252696|ref|YP_004595803.1|	-	0.0021	17.6	0.0	0.0026	17.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	conserved	protein
PLDc_N	PF13396.6	gi|336252697|ref|YP_004595804.1|	-	1.5e-07	31.2	5.1	1.5e-07	31.2	5.1	2.2	1	1	1	2	2	2	1	Phospholipase_D-nuclease	N-terminal
Wzy_C_2	PF11846.8	gi|336252697|ref|YP_004595804.1|	-	0.57	10.1	5.7	1.2	9.1	5.6	1.5	1	1	0	1	1	1	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
Phage_holin_3_6	PF07332.11	gi|336252697|ref|YP_004595804.1|	-	1.1	9.3	10.0	1.7	8.7	10.0	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
CcmD	PF04995.14	gi|336252697|ref|YP_004595804.1|	-	1.3	9.2	9.8	0.95	9.6	1.2	2.4	2	1	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
DUF2207	PF09972.9	gi|336252697|ref|YP_004595804.1|	-	4.7	5.9	5.1	5.5	5.6	5.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Ribosomal_L39	PF00832.20	gi|336252699|ref|YP_004595806.1|	-	1.1e-20	72.9	7.1	1.3e-20	72.7	7.1	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Ribosomal_L31e	PF01198.19	gi|336252700|ref|YP_004595807.1|	-	3e-08	33.8	0.1	3.8e-08	33.5	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Rap1a	PF18602.1	gi|336252700|ref|YP_004595807.1|	-	0.16	12.3	0.0	14	6.1	0.0	2.2	2	0	0	2	2	2	0	Rap1a	immunity	proteins
eIF-6	PF01912.18	gi|336252701|ref|YP_004595808.1|	-	8e-75	250.6	0.3	9.4e-75	250.3	0.3	1.1	1	0	0	1	1	1	1	eIF-6	family
ASCH	PF04266.14	gi|336252703|ref|YP_004595810.1|	-	0.0014	19.2	0.1	0.0023	18.5	0.1	1.3	1	1	0	1	1	1	1	ASCH	domain
Ribosomal_L18A	PF01775.17	gi|336252704|ref|YP_004595811.1|	-	1.2e-09	38.3	0.0	1.3e-09	38.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
YhzD	PF14120.6	gi|336252704|ref|YP_004595811.1|	-	0.033	14.3	0.2	0.042	13.9	0.2	1.2	1	0	0	1	1	1	0	YhzD-like	protein
Prefoldin	PF02996.17	gi|336252705|ref|YP_004595812.1|	-	1.7e-26	92.5	10.4	1.7e-26	92.5	10.4	2.0	1	1	1	2	2	2	2	Prefoldin	subunit
ZapB	PF06005.12	gi|336252705|ref|YP_004595812.1|	-	3.3e-07	30.6	28.1	0.00059	20.2	6.2	2.2	2	0	0	2	2	2	2	Cell	division	protein	ZapB
Prefoldin_2	PF01920.20	gi|336252705|ref|YP_004595812.1|	-	7e-07	29.2	27.0	0.00046	20.1	7.1	2.6	1	1	0	2	2	2	2	Prefoldin	subunit
Spc7	PF08317.11	gi|336252705|ref|YP_004595812.1|	-	3e-05	23.1	23.1	0.0014	17.5	7.5	2.1	2	0	0	2	2	2	2	Spc7	kinetochore	protein
Spc24	PF08286.11	gi|336252705|ref|YP_004595812.1|	-	5.5e-05	23.4	16.4	0.0037	17.5	1.1	2.2	2	0	0	2	2	2	2	Spc24	subunit	of	Ndc80
NPV_P10	PF05531.12	gi|336252705|ref|YP_004595812.1|	-	6.9e-05	23.2	21.1	0.0043	17.5	5.7	2.5	2	1	0	2	2	2	2	Nucleopolyhedrovirus	P10	protein
APG6_N	PF17675.1	gi|336252705|ref|YP_004595812.1|	-	9.9e-05	22.9	30.2	0.019	15.5	10.9	2.1	2	0	0	2	2	2	2	Apg6	coiled-coil	region
Ax_dynein_light	PF10211.9	gi|336252705|ref|YP_004595812.1|	-	0.00015	21.8	15.3	0.016	15.1	1.3	2.1	2	0	0	2	2	2	2	Axonemal	dynein	light	chain
TSC22	PF01166.18	gi|336252705|ref|YP_004595812.1|	-	0.00024	21.3	4.8	0.00024	21.3	4.8	3.3	3	1	0	3	3	2	1	TSC-22/dip/bun	family
GAS	PF13851.6	gi|336252705|ref|YP_004595812.1|	-	0.00032	20.1	18.7	0.023	14.0	6.0	2.1	2	0	0	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
YabA	PF06156.13	gi|336252705|ref|YP_004595812.1|	-	0.00035	21.2	16.0	0.024	15.2	1.9	2.2	2	0	0	2	2	2	2	Initiation	control	protein	YabA
DUF4337	PF14235.6	gi|336252705|ref|YP_004595812.1|	-	0.00054	20.1	16.5	0.0065	16.6	5.7	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4337)
DUF4618	PF15397.6	gi|336252705|ref|YP_004595812.1|	-	0.00068	19.1	16.4	0.054	12.9	2.8	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4618)
DUF3287	PF11690.8	gi|336252705|ref|YP_004595812.1|	-	0.00079	19.1	1.0	0.72	9.6	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3287)
DUF1664	PF07889.12	gi|336252705|ref|YP_004595812.1|	-	0.0008	19.4	14.9	0.04	14.0	3.1	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1664)
CENP-F_leu_zip	PF10473.9	gi|336252705|ref|YP_004595812.1|	-	0.00088	19.3	21.6	0.067	13.2	6.2	2.2	2	0	0	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3450	PF11932.8	gi|336252705|ref|YP_004595812.1|	-	0.001	18.5	24.5	0.017	14.4	8.4	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3450)
SlyX	PF04102.12	gi|336252705|ref|YP_004595812.1|	-	0.0011	19.5	32.9	0.27	11.9	15.2	3.1	3	0	0	3	3	3	2	SlyX
DUF5082	PF16888.5	gi|336252705|ref|YP_004595812.1|	-	0.0018	18.6	22.5	0.012	15.9	5.8	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF5082)
MIS13	PF08202.11	gi|336252705|ref|YP_004595812.1|	-	0.0018	17.6	9.0	0.0021	17.4	9.0	1.1	1	0	0	1	1	1	1	Mis12-Mtw1	protein	family
LRRFIP	PF09738.9	gi|336252705|ref|YP_004595812.1|	-	0.0019	17.8	16.7	0.094	12.2	4.9	2.1	2	0	0	2	2	2	2	LRRFIP	family
DUF4795	PF16043.5	gi|336252705|ref|YP_004595812.1|	-	0.0019	17.8	15.0	0.12	11.9	3.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4795)
Jnk-SapK_ap_N	PF09744.9	gi|336252705|ref|YP_004595812.1|	-	0.0024	18.1	21.4	0.0072	16.6	6.5	2.1	2	0	0	2	2	2	1	JNK_SAPK-associated	protein-1
BLOC1_2	PF10046.9	gi|336252705|ref|YP_004595812.1|	-	0.0025	18.1	24.2	0.085	13.2	9.0	2.7	2	1	1	3	3	2	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF812	PF05667.11	gi|336252705|ref|YP_004595812.1|	-	0.0027	16.7	24.0	0.082	11.8	9.7	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF812)
DASH_Spc19	PF08287.11	gi|336252705|ref|YP_004595812.1|	-	0.0028	17.6	12.8	0.092	12.6	5.4	2.2	2	0	0	2	2	2	2	Spc19
DUF4201	PF13870.6	gi|336252705|ref|YP_004595812.1|	-	0.0028	17.4	15.0	0.033	13.9	2.8	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4201)
DUF4349	PF14257.6	gi|336252705|ref|YP_004595812.1|	-	0.0031	17.0	25.2	0.0067	15.9	10.6	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4349)
Laminin_II	PF06009.12	gi|336252705|ref|YP_004595812.1|	-	0.0032	17.5	12.5	0.11	12.5	3.3	2.2	2	0	0	2	2	2	2	Laminin	Domain	II
Tropomyosin_1	PF12718.7	gi|336252705|ref|YP_004595812.1|	-	0.0032	17.6	22.8	0.022	14.9	6.8	2.2	2	0	0	2	2	2	1	Tropomyosin	like
Synaptobrevin	PF00957.21	gi|336252705|ref|YP_004595812.1|	-	0.0039	16.9	16.3	0.01	15.6	4.1	2.3	2	0	0	2	2	2	1	Synaptobrevin
MscS_porin	PF12795.7	gi|336252705|ref|YP_004595812.1|	-	0.0044	16.6	29.0	0.037	13.6	10.6	2.1	2	0	0	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
SKA2	PF16740.5	gi|336252705|ref|YP_004595812.1|	-	0.0048	16.7	20.6	0.0059	16.4	3.7	2.3	2	1	0	2	2	2	1	Spindle	and	kinetochore-associated	protein	2
Sec34	PF04136.15	gi|336252705|ref|YP_004595812.1|	-	0.0052	16.7	17.5	0.071	13.0	5.6	2.2	2	0	0	2	2	2	2	Sec34-like	family
FlaC_arch	PF05377.11	gi|336252705|ref|YP_004595812.1|	-	0.0053	17.1	18.2	0.66	10.4	5.9	3.7	3	2	0	3	3	3	1	Flagella	accessory	protein	C	(FlaC)
DUF4407	PF14362.6	gi|336252705|ref|YP_004595812.1|	-	0.0055	16.1	20.0	0.055	12.8	19.7	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Fib_alpha	PF08702.10	gi|336252705|ref|YP_004595812.1|	-	0.0055	16.9	16.2	0.086	13.0	1.4	2.2	1	1	0	2	2	2	1	Fibrinogen	alpha/beta	chain	family
Uds1	PF15456.6	gi|336252705|ref|YP_004595812.1|	-	0.0073	16.5	11.4	0.021	15.0	11.4	2.0	1	1	0	1	1	1	1	Up-regulated	During	Septation
AAA_13	PF13166.6	gi|336252705|ref|YP_004595812.1|	-	0.0077	14.9	19.7	0.061	12.0	5.7	2.0	2	0	0	2	2	2	2	AAA	domain
ATG16	PF08614.11	gi|336252705|ref|YP_004595812.1|	-	0.0077	16.5	19.7	0.16	12.2	6.7	2.1	2	0	0	2	2	2	2	Autophagy	protein	16	(ATG16)
GPS2_interact	PF15784.5	gi|336252705|ref|YP_004595812.1|	-	0.0081	16.6	5.7	0.0081	16.6	5.7	2.1	2	0	0	2	2	2	1	G-protein	pathway	suppressor	2-interacting	domain
Tektin	PF03148.14	gi|336252705|ref|YP_004595812.1|	-	0.0083	14.9	18.4	0.02	13.6	3.2	2.2	2	0	0	2	2	2	1	Tektin	family
DASH_Dam1	PF08653.10	gi|336252705|ref|YP_004595812.1|	-	0.0084	15.9	9.9	0.082	12.7	1.1	3.2	3	1	0	3	3	2	1	DASH	complex	subunit	Dam1
HAUS-augmin3	PF14932.6	gi|336252705|ref|YP_004595812.1|	-	0.0093	15.6	19.3	0.2	11.2	6.1	2.1	2	0	0	2	2	2	2	HAUS	augmin-like	complex	subunit	3
Nmad5	PF18757.1	gi|336252705|ref|YP_004595812.1|	-	0.011	16.0	4.2	0.019	15.2	4.2	1.5	1	1	0	1	1	1	0	Nucleotide	modification	associated	domain	5
Vps51	PF08700.11	gi|336252705|ref|YP_004595812.1|	-	0.011	15.8	8.6	0.13	12.3	1.1	2.9	2	0	0	2	2	2	0	Vps51/Vps67
Muted	PF14942.6	gi|336252705|ref|YP_004595812.1|	-	0.012	16.0	16.6	0.32	11.3	4.5	2.1	2	0	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Not3	PF04065.15	gi|336252705|ref|YP_004595812.1|	-	0.012	15.0	15.2	0.076	12.4	3.9	2.1	2	0	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DHR10	PF18595.1	gi|336252705|ref|YP_004595812.1|	-	0.013	15.5	27.2	0.086	12.9	9.3	2.2	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
PI3K_P85_iSH2	PF16454.5	gi|336252705|ref|YP_004595812.1|	-	0.019	14.6	15.7	0.36	10.4	3.6	2.1	2	0	0	2	2	2	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
GCN5L1	PF06320.13	gi|336252705|ref|YP_004595812.1|	-	0.02	15.0	4.8	0.02	15.0	4.8	2.2	2	0	0	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Cob_adeno_trans	PF01923.18	gi|336252705|ref|YP_004595812.1|	-	0.022	14.9	13.3	0.027	14.6	1.6	2.2	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
Syntaxin	PF00804.25	gi|336252705|ref|YP_004595812.1|	-	0.023	14.4	15.1	0.037	13.7	3.0	2.1	1	1	1	2	2	2	0	Syntaxin
Mod_r	PF07200.13	gi|336252705|ref|YP_004595812.1|	-	0.023	14.8	19.4	0.24	11.5	5.4	2.1	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DivIC	PF04977.15	gi|336252705|ref|YP_004595812.1|	-	0.024	14.4	30.5	0.027	14.2	9.5	3.2	2	1	1	3	3	3	0	Septum	formation	initiator
SAS4	PF15460.6	gi|336252705|ref|YP_004595812.1|	-	0.026	14.6	3.9	0.026	14.6	3.9	2.7	2	2	0	2	2	2	0	Something	about	silencing,	SAS,	complex	subunit	4
SHE3	PF17078.5	gi|336252705|ref|YP_004595812.1|	-	0.033	13.9	13.7	0.16	11.7	2.0	2.1	2	0	0	2	2	2	0	SWI5-dependent	HO	expression	protein	3
UPF0242	PF06785.11	gi|336252705|ref|YP_004595812.1|	-	0.035	14.2	24.0	0.032	14.3	7.8	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
TolA_bind_tri	PF16331.5	gi|336252705|ref|YP_004595812.1|	-	0.035	14.2	10.8	0.035	14.2	10.8	3.2	2	1	0	2	2	1	0	TolA	binding	protein	trimerisation
DUF4988	PF16378.5	gi|336252705|ref|YP_004595812.1|	-	0.037	13.7	10.0	0.47	10.1	1.1	2.4	1	1	0	2	2	2	0	Domain	of	unknown	function
CdvA	PF18822.1	gi|336252705|ref|YP_004595812.1|	-	0.038	13.8	17.6	0.086	12.7	2.9	3.1	2	2	0	2	2	2	0	CdvA-like	coiled-coil	domain
RPW8	PF05659.11	gi|336252705|ref|YP_004595812.1|	-	0.039	13.6	6.9	0.92	9.2	0.7	2.4	2	1	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Baculo_PEP_C	PF04513.12	gi|336252705|ref|YP_004595812.1|	-	0.047	13.7	18.0	0.34	11.0	5.3	2.4	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FapA	PF03961.13	gi|336252705|ref|YP_004595812.1|	-	0.047	12.3	16.3	0.12	11.0	3.5	2.0	1	1	0	2	2	2	0	Flagellar	Assembly	Protein	A
IFT57	PF10498.9	gi|336252705|ref|YP_004595812.1|	-	0.047	12.6	19.1	0.061	12.3	6.5	2.1	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
Allexi_40kDa	PF05549.11	gi|336252705|ref|YP_004595812.1|	-	0.049	13.1	5.7	0.9	9.0	0.4	2.0	2	0	0	2	2	2	0	Allexivirus	40kDa	protein
MtrB	PF05440.12	gi|336252705|ref|YP_004595812.1|	-	0.049	14.0	3.0	2.4	8.6	0.5	2.4	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
XhlA	PF10779.9	gi|336252705|ref|YP_004595812.1|	-	0.05	13.8	2.7	0.05	13.8	2.7	2.8	2	1	1	3	3	2	0	Haemolysin	XhlA
PRTP	PF01366.18	gi|336252705|ref|YP_004595812.1|	-	0.059	11.4	6.5	0.072	11.1	6.5	1.1	1	0	0	1	1	1	0	Herpesvirus	processing	and	transport	protein
V_ATPase_I	PF01496.19	gi|336252705|ref|YP_004595812.1|	-	0.066	11.1	15.5	0.13	10.2	3.5	2.0	2	0	0	2	2	2	0	V-type	ATPase	116kDa	subunit	family
HBM	PF16591.5	gi|336252705|ref|YP_004595812.1|	-	0.068	12.6	17.6	0.35	10.3	3.2	2.2	2	0	0	2	2	2	0	Helical	bimodular	sensor	domain
Dor1	PF04124.12	gi|336252705|ref|YP_004595812.1|	-	0.069	11.8	11.8	0.22	10.2	1.5	2.1	2	0	0	2	2	2	0	Dor1-like	family
kleA_kleC	PF17383.2	gi|336252705|ref|YP_004595812.1|	-	0.071	13.4	11.8	0.12	12.7	2.7	2.5	2	1	0	2	2	2	0	Uncharacterized	KorC	regulated	protein	A
Dynamitin	PF04912.14	gi|336252705|ref|YP_004595812.1|	-	0.076	12.3	18.2	0.25	10.6	3.9	2.0	2	0	0	2	2	2	0	Dynamitin
Cytochrom_C_2	PF01322.20	gi|336252705|ref|YP_004595812.1|	-	0.098	13.5	12.5	0.074	13.9	4.3	2.1	1	1	1	2	2	2	0	Cytochrome	C'
ERM	PF00769.19	gi|336252705|ref|YP_004595812.1|	-	0.1	12.4	26.7	0.084	12.7	9.3	2.1	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
MAD	PF05557.13	gi|336252705|ref|YP_004595812.1|	-	0.12	10.8	20.5	0.054	11.8	5.4	2.0	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
DUF4515	PF14988.6	gi|336252705|ref|YP_004595812.1|	-	0.12	12.2	23.4	0.1	12.4	4.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4515)
Golgin_A5	PF09787.9	gi|336252705|ref|YP_004595812.1|	-	0.12	11.8	24.8	0.1	12.1	9.6	2.0	2	0	0	2	2	2	0	Golgin	subfamily	A	member	5
MCU	PF04678.13	gi|336252705|ref|YP_004595812.1|	-	0.12	12.4	15.2	0.84	9.7	2.9	2.1	1	1	1	2	2	2	0	Mitochondrial	calcium	uniporter
FbpA	PF05833.11	gi|336252705|ref|YP_004595812.1|	-	0.13	11.0	17.6	0.32	9.7	5.2	2.1	2	0	0	2	2	2	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF1465	PF07323.12	gi|336252705|ref|YP_004595812.1|	-	0.15	11.9	9.4	0.86	9.4	1.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
ORF6C	PF10552.9	gi|336252705|ref|YP_004595812.1|	-	0.15	12.2	15.1	0.33	11.0	3.7	2.4	2	0	0	2	2	2	0	ORF6C	domain
Occludin_ELL	PF07303.13	gi|336252705|ref|YP_004595812.1|	-	0.15	12.8	15.2	0.84	10.4	1.9	2.5	2	1	0	2	2	2	0	Occludin	homology	domain
T3SSipB	PF16535.5	gi|336252705|ref|YP_004595812.1|	-	0.15	12.5	19.9	1.1	9.7	3.5	2.1	2	0	0	2	2	2	0	Type	III	cell	invasion	protein	SipB
Atg14	PF10186.9	gi|336252705|ref|YP_004595812.1|	-	0.16	11.0	12.7	0.56	9.2	3.2	2.0	2	0	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Cas_DxTHG	PF09455.10	gi|336252705|ref|YP_004595812.1|	-	0.17	11.5	2.0	0.22	11.1	2.0	1.1	1	0	0	1	1	1	0	CRISPR-associated	(Cas)	DxTHG	family
Sipho_Gp157	PF05565.11	gi|336252705|ref|YP_004595812.1|	-	0.17	11.9	18.9	0.5	10.4	7.6	2.2	2	0	0	2	2	2	0	Siphovirus	Gp157
YkyA	PF10368.9	gi|336252705|ref|YP_004595812.1|	-	0.17	11.6	21.8	0.47	10.1	6.5	2.3	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
DUF4200	PF13863.6	gi|336252705|ref|YP_004595812.1|	-	0.17	12.3	21.8	1.5	9.3	6.7	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
TFR_dimer	PF04253.15	gi|336252705|ref|YP_004595812.1|	-	0.17	12.0	6.2	5.8	7.0	1.7	2.5	2	1	0	2	2	2	0	Transferrin	receptor-like	dimerisation	domain
TPR_MLP1_2	PF07926.12	gi|336252705|ref|YP_004595812.1|	-	0.18	11.9	28.0	1.7	8.7	9.1	2.5	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
ADIP	PF11559.8	gi|336252705|ref|YP_004595812.1|	-	0.18	11.9	20.2	0.51	10.4	6.1	2.2	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Cluap1	PF10234.9	gi|336252705|ref|YP_004595812.1|	-	0.19	11.1	16.6	0.32	10.4	4.5	2.1	2	0	0	2	2	2	0	Clusterin-associated	protein-1
TACC_C	PF05010.14	gi|336252705|ref|YP_004595812.1|	-	0.19	11.5	19.2	0.43	10.3	4.8	2.1	2	0	0	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
COG6	PF06419.11	gi|336252705|ref|YP_004595812.1|	-	0.2	9.8	15.4	0.34	9.1	4.2	2.0	2	0	0	2	2	2	0	Conserved	oligomeric	complex	COG6
DUF2353	PF09789.9	gi|336252705|ref|YP_004595812.1|	-	0.21	10.9	17.0	0.48	9.7	17.0	1.5	1	1	0	1	1	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Csm1_N	PF18504.1	gi|336252705|ref|YP_004595812.1|	-	0.23	11.8	24.9	0.99	9.8	8.2	3.0	3	1	0	3	3	2	0	Csm1	N-terminal	domain
FliJ	PF02050.16	gi|336252705|ref|YP_004595812.1|	-	0.23	11.7	29.2	0.075	13.3	8.2	2.3	2	1	0	2	2	2	0	Flagellar	FliJ	protein
Sec8_exocyst	PF04048.14	gi|336252705|ref|YP_004595812.1|	-	0.24	11.3	10.9	0.18	11.7	3.2	2.2	2	0	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
AAA_lid_9	PF17871.1	gi|336252705|ref|YP_004595812.1|	-	0.25	11.3	15.9	0.2	11.6	4.9	2.3	2	0	0	2	2	2	0	AAA	lid	domain
Tmemb_cc2	PF10267.9	gi|336252705|ref|YP_004595812.1|	-	0.25	10.4	17.3	0.13	11.4	5.2	2.0	2	0	0	2	2	2	0	Predicted	transmembrane	and	coiled-coil	2	protein
YlqD	PF11068.8	gi|336252705|ref|YP_004595812.1|	-	0.27	11.6	28.6	0.88	9.9	11.1	2.4	2	0	0	2	2	2	0	YlqD	protein
JIP_LZII	PF16471.5	gi|336252705|ref|YP_004595812.1|	-	0.27	11.4	17.4	0.54	10.5	3.9	2.6	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
DUF2730	PF10805.8	gi|336252705|ref|YP_004595812.1|	-	0.28	11.3	10.1	2	8.5	2.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
AAA_23	PF13476.6	gi|336252705|ref|YP_004595812.1|	-	0.28	11.7	23.3	0.063	13.8	4.5	2.1	2	0	0	2	2	2	0	AAA	domain
Med14	PF08638.11	gi|336252705|ref|YP_004595812.1|	-	0.28	10.6	3.8	0.17	11.3	0.1	2.0	1	1	1	2	2	2	0	Mediator	complex	subunit	MED14
TLE_N	PF03920.15	gi|336252705|ref|YP_004595812.1|	-	0.29	11.2	15.5	0.087	12.9	3.7	2.3	2	0	0	2	2	2	0	Groucho/TLE	N-terminal	Q-rich	domain
THOC7	PF05615.13	gi|336252705|ref|YP_004595812.1|	-	0.3	11.4	20.9	0.26	11.6	4.3	2.7	2	1	0	2	2	2	0	Tho	complex	subunit	7
Seryl_tRNA_N	PF02403.22	gi|336252705|ref|YP_004595812.1|	-	0.3	11.3	19.0	0.37	11.1	3.9	2.5	2	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF948	PF06103.11	gi|336252705|ref|YP_004595812.1|	-	0.31	11.3	15.3	0.64	10.3	3.2	2.5	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DivIVA	PF05103.13	gi|336252705|ref|YP_004595812.1|	-	0.31	11.1	21.5	0.52	10.4	6.3	2.2	2	0	0	2	2	2	0	DivIVA	protein
FliD_C	PF07195.12	gi|336252705|ref|YP_004595812.1|	-	0.33	10.3	17.0	0.29	10.5	7.9	2.4	2	1	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
TMF_TATA_bd	PF12325.8	gi|336252705|ref|YP_004595812.1|	-	0.34	11.1	24.8	0.45	10.7	7.1	2.3	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Spectrin	PF00435.21	gi|336252705|ref|YP_004595812.1|	-	0.35	11.4	22.1	0.93	10.0	6.9	2.3	2	0	0	2	2	2	0	Spectrin	repeat
EzrA	PF06160.12	gi|336252705|ref|YP_004595812.1|	-	0.4	8.8	21.2	0.87	7.7	5.6	2.1	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
End3	PF12761.7	gi|336252705|ref|YP_004595812.1|	-	0.44	10.7	14.4	1.9	8.6	2.7	2.3	2	0	0	2	2	2	0	Actin	cytoskeleton-regulatory	complex	protein	END3
LMBR1	PF04791.16	gi|336252705|ref|YP_004595812.1|	-	0.47	9.3	5.6	0.59	9.0	5.6	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
RmuC	PF02646.16	gi|336252705|ref|YP_004595812.1|	-	0.51	9.4	19.0	1.6	7.8	7.1	2.1	2	0	0	2	2	2	0	RmuC	family
Hemerythrin	PF01814.23	gi|336252705|ref|YP_004595812.1|	-	0.56	10.8	8.2	2.1e+02	2.5	8.2	2.5	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
HOOK	PF05622.12	gi|336252705|ref|YP_004595812.1|	-	0.56	8.3	26.9	1.2e+02	0.6	26.9	2.0	1	1	0	1	1	1	0	HOOK	protein
Phage_GP20	PF06810.11	gi|336252705|ref|YP_004595812.1|	-	0.57	10.0	27.4	2.8	7.8	12.4	2.7	1	1	2	3	3	3	0	Phage	minor	structural	protein	GP20
FH2	PF02181.23	gi|336252705|ref|YP_004595812.1|	-	0.6	9.2	11.5	0.86	8.6	2.5	2.1	2	0	0	2	2	2	0	Formin	Homology	2	Domain
Plk4_PB2	PF18409.1	gi|336252705|ref|YP_004595812.1|	-	0.66	10.7	6.2	6.3	7.5	0.7	2.1	2	0	0	2	2	2	0	Polo-like	Kinase	4	Polo	Box	2
ISG65-75	PF11727.8	gi|336252705|ref|YP_004595812.1|	-	0.66	9.2	9.4	0.56	9.4	2.2	2.0	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
SKA1	PF07160.12	gi|336252705|ref|YP_004595812.1|	-	0.68	9.7	14.7	2.2	8.1	4.7	2.1	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
GrpE	PF01025.19	gi|336252705|ref|YP_004595812.1|	-	0.7	9.5	21.1	2.5	7.8	8.2	2.2	2	0	0	2	2	2	0	GrpE
Acyl-CoA_dh_C	PF12806.7	gi|336252705|ref|YP_004595812.1|	-	0.7	10.1	9.7	6	7.1	0.4	2.3	1	1	1	2	2	2	0	Acetyl-CoA	dehydrogenase	C-terminal	like
FlxA	PF14282.6	gi|336252705|ref|YP_004595812.1|	-	0.74	9.8	44.6	0.6	10.1	14.7	2.8	2	1	0	2	2	2	0	FlxA-like	protein
T2SSM	PF04612.12	gi|336252705|ref|YP_004595812.1|	-	0.77	9.8	15.9	1.2	9.2	2.0	2.2	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
HemX	PF04375.14	gi|336252705|ref|YP_004595812.1|	-	0.84	8.9	31.0	1.1	8.5	11.3	2.1	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF4763	PF15960.5	gi|336252705|ref|YP_004595812.1|	-	0.89	8.8	21.3	0.58	9.4	4.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4763)
Prominin	PF05478.11	gi|336252705|ref|YP_004595812.1|	-	0.9	7.4	14.0	1	7.2	3.2	1.8	1	1	0	2	2	2	0	Prominin
GIT_CC	PF16559.5	gi|336252705|ref|YP_004595812.1|	-	0.97	9.3	23.5	0.36	10.7	9.2	2.3	2	0	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
DUF4446	PF14584.6	gi|336252705|ref|YP_004595812.1|	-	0.97	9.4	14.0	2.9	7.8	2.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
NBD94	PF16830.5	gi|336252705|ref|YP_004595812.1|	-	1	9.8	10.6	2.3	8.7	0.6	2.6	3	0	0	3	3	2	0	Nucleotide-Binding	Domain	94	of	RH
Fzo_mitofusin	PF04799.13	gi|336252705|ref|YP_004595812.1|	-	1.1	8.8	14.9	1.2	8.7	2.7	2.2	2	0	0	2	2	2	0	fzo-like	conserved	region
Vps5	PF09325.10	gi|336252705|ref|YP_004595812.1|	-	1.1	8.8	14.3	9.9	5.6	14.3	2.0	1	1	0	1	1	1	0	Vps5	C	terminal	like
CC2-LZ	PF16516.5	gi|336252705|ref|YP_004595812.1|	-	1.1	9.7	21.8	0.5	10.8	7.1	2.4	2	0	0	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
GTP-bdg_M	PF16360.5	gi|336252705|ref|YP_004595812.1|	-	1.1	9.9	12.4	0.55	10.9	0.3	3.0	2	1	1	3	3	3	0	GTP-binding	GTPase	Middle	Region
COG2	PF06148.11	gi|336252705|ref|YP_004595812.1|	-	1.2	9.2	19.9	0.36	10.9	5.3	2.2	1	1	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Spc29	PF17082.5	gi|336252705|ref|YP_004595812.1|	-	1.2	8.9	9.0	4.8	7.0	1.7	2.0	2	0	0	2	2	2	0	Spindle	Pole	Component	29
DUF932	PF06067.11	gi|336252705|ref|YP_004595812.1|	-	1.2	8.8	15.2	2.2	8.0	4.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF932)
Cauli_AT	PF03233.13	gi|336252705|ref|YP_004595812.1|	-	1.3	8.9	9.5	1.7	8.5	1.8	2.2	2	0	0	2	2	2	0	Aphid	transmission	protein
FUSC	PF04632.12	gi|336252705|ref|YP_004595812.1|	-	1.4	7.4	9.3	1.9	6.9	9.3	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
CENP-Q	PF13094.6	gi|336252705|ref|YP_004595812.1|	-	1.5	9.0	21.7	0.65	10.2	5.2	2.2	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
bZIP_Maf	PF03131.17	gi|336252705|ref|YP_004595812.1|	-	1.5	9.4	22.6	3.8	8.1	8.5	2.4	2	0	0	2	2	2	0	bZIP	Maf	transcription	factor
Osmo_CC	PF08946.10	gi|336252705|ref|YP_004595812.1|	-	1.6	9.0	30.8	7.3	6.9	9.6	4.3	3	2	1	4	4	4	0	Osmosensory	transporter	coiled	coil
SPT16	PF08644.11	gi|336252705|ref|YP_004595812.1|	-	1.6	8.9	11.2	1.4	9.1	0.5	2.1	2	0	0	2	2	2	0	FACT	complex	subunit	(SPT16/CDC68)
Mt_ATP-synt_D	PF05873.12	gi|336252705|ref|YP_004595812.1|	-	1.7	8.5	12.1	0.95	9.3	2.6	2.1	2	0	0	2	2	2	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
bZIP_1	PF00170.21	gi|336252705|ref|YP_004595812.1|	-	1.8	8.7	18.4	1.3	9.1	0.4	3.4	2	2	1	3	3	3	0	bZIP	transcription	factor
L31	PF09784.9	gi|336252705|ref|YP_004595812.1|	-	2	8.9	8.0	8.4	6.9	2.1	2.3	2	1	0	2	2	2	0	Mitochondrial	ribosomal	protein	L31
PRKG1_interact	PF15898.5	gi|336252705|ref|YP_004595812.1|	-	2.1	9.3	20.0	1.4	9.9	4.0	2.3	2	1	0	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
CENP-H	PF05837.12	gi|336252705|ref|YP_004595812.1|	-	2.3	8.6	24.4	6.7	7.2	9.8	2.2	1	1	0	2	2	2	0	Centromere	protein	H	(CENP-H)
DUF2968	PF11180.8	gi|336252705|ref|YP_004595812.1|	-	2.3	7.8	30.0	2.4	7.7	10.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
Sas10_Utp3	PF04000.15	gi|336252705|ref|YP_004595812.1|	-	2.4	8.8	13.6	0.34	11.5	1.8	2.6	2	1	0	2	2	2	0	Sas10/Utp3/C1D	family
DUF3552	PF12072.8	gi|336252705|ref|YP_004595812.1|	-	2.5	7.5	24.7	0.46	9.9	9.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF3138	PF11336.8	gi|336252705|ref|YP_004595812.1|	-	2.7	6.5	9.4	0.17	10.5	3.3	1.8	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF3138)
USP8_interact	PF08941.10	gi|336252705|ref|YP_004595812.1|	-	2.7	7.8	11.3	0.52	10.1	0.6	2.2	2	0	0	2	2	2	0	USP8	interacting
Vps53_N	PF04100.12	gi|336252705|ref|YP_004595812.1|	-	2.7	6.8	12.5	0.65	8.9	1.7	2.1	2	0	0	2	2	2	0	Vps53-like,	N-terminal
PspA_IM30	PF04012.12	gi|336252705|ref|YP_004595812.1|	-	2.8	7.5	28.1	4.2	6.9	7.2	2.3	2	1	0	2	2	2	0	PspA/IM30	family
Tho2	PF11262.8	gi|336252705|ref|YP_004595812.1|	-	2.8	7.1	11.9	1.2	8.3	2.1	2.0	2	0	0	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
DUF4140	PF13600.6	gi|336252705|ref|YP_004595812.1|	-	2.8	8.4	25.6	13	6.3	9.6	3.2	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
MtrG	PF04210.13	gi|336252705|ref|YP_004595812.1|	-	2.9	7.8	8.2	8.4	6.3	0.5	2.8	2	2	1	3	3	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
DUF641	PF04859.12	gi|336252705|ref|YP_004595812.1|	-	2.9	8.2	13.5	5.2	7.4	3.9	2.3	2	0	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
DUF724	PF05266.14	gi|336252705|ref|YP_004595812.1|	-	2.9	7.7	20.8	4.8	7.0	8.4	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
zf-CpG_bind_C	PF12269.8	gi|336252705|ref|YP_004595812.1|	-	2.9	7.6	15.2	4.8	6.9	4.3	2.1	2	0	0	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
TMPIT	PF07851.13	gi|336252705|ref|YP_004595812.1|	-	3	7.0	16.4	0.6	9.3	1.7	2.0	1	1	1	2	2	2	0	TMPIT-like	protein
CASP_C	PF08172.12	gi|336252705|ref|YP_004595812.1|	-	3	7.1	18.0	9.4	5.5	17.7	1.8	1	1	0	1	1	1	0	CASP	C	terminal
EMP24_GP25L	PF01105.24	gi|336252705|ref|YP_004595812.1|	-	3.1	7.7	15.8	3.4	7.6	4.4	2.1	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
HalX	PF08663.10	gi|336252705|ref|YP_004595812.1|	-	3.3	8.1	26.0	0.12	12.7	4.8	3.8	2	2	2	4	4	4	0	HalX	domain
DUF1192	PF06698.11	gi|336252705|ref|YP_004595812.1|	-	3.7	7.7	17.4	1.9	8.6	3.7	2.9	2	1	0	3	3	2	0	Protein	of	unknown	function	(DUF1192)
Fmp27_WPPW	PF10359.9	gi|336252705|ref|YP_004595812.1|	-	3.7	6.3	19.0	3	6.6	3.9	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
Nsp1_C	PF05064.13	gi|336252705|ref|YP_004595812.1|	-	3.7	7.4	19.8	2.6	7.9	7.0	2.2	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
DLP_helical	PF18709.1	gi|336252705|ref|YP_004595812.1|	-	3.8	6.6	15.9	3.5	6.7	4.8	2.1	2	0	0	2	2	2	0	Dynamin-like	helical	domain
Syntaxin-6_N	PF09177.11	gi|336252705|ref|YP_004595812.1|	-	3.9	8.1	16.2	0.94	10.1	2.0	2.7	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF1515	PF07439.11	gi|336252705|ref|YP_004595812.1|	-	3.9	7.5	11.6	1.1	9.3	2.3	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Med9	PF07544.13	gi|336252705|ref|YP_004595812.1|	-	4	7.6	22.0	1.8	8.7	4.8	2.3	2	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
MRP-L28	PF09812.9	gi|336252705|ref|YP_004595812.1|	-	4.1	7.5	16.2	0.42	10.7	3.5	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L28
Med10	PF09748.9	gi|336252705|ref|YP_004595812.1|	-	4.2	7.4	14.1	0.44	10.5	3.1	2.4	2	1	0	2	2	2	0	Transcription	factor	subunit	Med10	of	Mediator	complex
UPF0449	PF15136.6	gi|336252705|ref|YP_004595812.1|	-	4.2	7.9	20.9	6.4	7.3	6.9	2.4	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Tweety	PF04906.13	gi|336252705|ref|YP_004595812.1|	-	4.5	5.8	6.8	1.6	7.3	0.4	2.0	2	0	0	2	2	2	0	Tweety
FAD-SLDH	PF12318.8	gi|336252705|ref|YP_004595812.1|	-	4.5	7.3	9.1	4.7	7.3	1.4	2.3	2	0	0	2	2	2	0	Membrane	bound	FAD	containing	D-sorbitol	dehydrogenase
Nup54	PF13874.6	gi|336252705|ref|YP_004595812.1|	-	4.6	7.3	19.2	6.7	6.8	3.9	2.2	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
Hemagglutinin	PF00509.18	gi|336252705|ref|YP_004595812.1|	-	4.9	5.4	8.0	3.6	5.9	0.4	2.0	2	0	0	2	2	2	0	Haemagglutinin
KfrA_N	PF11740.8	gi|336252705|ref|YP_004595812.1|	-	5	7.8	33.3	1.6	9.4	10.7	3.0	1	1	1	3	3	2	0	Plasmid	replication	region	DNA-binding	N-term
DUF4665	PF15679.5	gi|336252705|ref|YP_004595812.1|	-	5.2	7.8	13.1	2.2	8.9	1.4	2.6	2	1	1	3	3	2	0	Domain	of	unknown	function	(DUF4665)
DUF2203	PF09969.9	gi|336252705|ref|YP_004595812.1|	-	5.3	7.8	17.3	3.8	8.3	3.8	2.4	1	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
PHM7_cyt	PF14703.6	gi|336252705|ref|YP_004595812.1|	-	5.4	7.2	12.9	11	6.2	1.0	2.5	2	1	0	2	2	2	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
Cep57_MT_bd	PF06657.13	gi|336252705|ref|YP_004595812.1|	-	5.6	7.5	22.6	3.3	8.2	5.4	3.0	2	1	1	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
LPP	PF04728.13	gi|336252705|ref|YP_004595812.1|	-	5.8	7.4	26.4	0.54	10.7	5.6	2.9	3	1	0	3	3	2	0	Lipoprotein	leucine-zipper
WXG100	PF06013.12	gi|336252705|ref|YP_004595812.1|	-	6.6	7.0	24.2	6.6	7.1	4.0	3.3	2	2	1	3	3	3	0	Proteins	of	100	residues	with	WXG
CorA	PF01544.18	gi|336252705|ref|YP_004595812.1|	-	6.6	6.0	18.2	2e+02	1.1	18.2	2.2	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF16	PF01519.16	gi|336252705|ref|YP_004595812.1|	-	6.8	7.2	27.3	6.1	7.4	6.8	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	DUF16
Rho_Binding	PF08912.11	gi|336252705|ref|YP_004595812.1|	-	6.8	7.6	27.2	6.8	7.6	8.1	2.7	2	1	0	2	2	2	0	Rho	Binding
DUF2205	PF10224.9	gi|336252705|ref|YP_004595812.1|	-	7.3	6.7	25.7	7.4	6.6	6.6	2.9	2	1	1	3	3	3	0	Short	coiled-coil	protein
Vps52	PF04129.12	gi|336252705|ref|YP_004595812.1|	-	7.4	5.2	10.5	0.46	9.2	1.3	2.0	2	0	0	2	2	2	0	Vps52	/	Sac2	family
CCDC106	PF15794.5	gi|336252705|ref|YP_004595812.1|	-	7.6	6.2	13.6	2.8	7.6	5.6	2.1	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	106
BRE1	PF08647.11	gi|336252705|ref|YP_004595812.1|	-	7.7	6.7	24.7	1.2	9.3	6.9	2.4	2	1	0	2	2	2	0	BRE1	E3	ubiquitin	ligase
Swi5	PF07061.11	gi|336252705|ref|YP_004595812.1|	-	7.8	6.7	24.2	2.6	8.2	6.4	3.1	2	1	1	3	3	3	0	Swi5
FAM76	PF16046.5	gi|336252705|ref|YP_004595812.1|	-	8.2	5.7	11.0	7.5	5.8	1.8	2.1	2	0	0	2	2	2	0	FAM76	protein
Fungal_TACC	PF12709.7	gi|336252705|ref|YP_004595812.1|	-	9.7	6.7	20.2	4.9	7.7	6.8	2.5	2	1	0	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
Pro_CA	PF00484.19	gi|336252705|ref|YP_004595812.1|	-	9.8	6.4	7.4	19	5.5	2.2	2.1	2	0	0	2	2	2	0	Carbonic	anhydrase
SRP54	PF00448.22	gi|336252706|ref|YP_004595813.1|	-	6.5e-68	228.2	0.2	9.3e-68	227.7	0.2	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|336252706|ref|YP_004595813.1|	-	4.8e-13	49.1	0.7	4.8e-13	49.1	0.7	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
APS_kinase	PF01583.20	gi|336252706|ref|YP_004595813.1|	-	2.4e-05	24.3	0.0	4.3e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_30	PF13604.6	gi|336252706|ref|YP_004595813.1|	-	0.0005	19.8	0.7	0.0023	17.7	0.7	2.1	1	1	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|336252706|ref|YP_004595813.1|	-	0.00063	19.5	0.8	0.019	14.6	0.0	2.8	3	0	0	3	3	2	1	Thymidylate	kinase
CbiA	PF01656.23	gi|336252706|ref|YP_004595813.1|	-	0.0008	19.5	0.1	0.0016	18.5	0.1	1.6	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|336252706|ref|YP_004595813.1|	-	0.00092	18.5	1.4	0.00098	18.4	0.1	1.7	2	0	0	2	2	2	1	Zeta	toxin
NTPase_1	PF03266.15	gi|336252706|ref|YP_004595813.1|	-	0.0024	17.8	0.3	0.0095	15.9	0.1	2.0	2	0	0	2	2	2	1	NTPase
6PF2K	PF01591.18	gi|336252706|ref|YP_004595813.1|	-	0.003	16.9	0.0	0.0056	16.0	0.0	1.4	1	0	0	1	1	1	1	6-phosphofructo-2-kinase
AAA_33	PF13671.6	gi|336252706|ref|YP_004595813.1|	-	0.006	16.8	0.0	0.015	15.4	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|336252706|ref|YP_004595813.1|	-	0.0069	16.6	0.3	0.0069	16.6	0.3	3.4	3	1	0	3	3	3	1	AAA	domain
LytR_C	PF13399.6	gi|336252706|ref|YP_004595813.1|	-	0.0077	17.2	0.2	0.051	14.5	0.2	2.4	1	0	0	1	1	1	1	LytR	cell	envelope-related	transcriptional	attenuator
AAA_16	PF13191.6	gi|336252706|ref|YP_004595813.1|	-	0.0079	16.6	0.0	0.0079	16.6	0.0	2.8	2	1	0	2	2	1	1	AAA	ATPase	domain
cobW	PF02492.19	gi|336252706|ref|YP_004595813.1|	-	0.0083	15.7	0.2	0.017	14.7	0.2	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|336252706|ref|YP_004595813.1|	-	0.01	16.1	0.1	0.12	12.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.6	gi|336252706|ref|YP_004595813.1|	-	0.011	16.2	0.1	0.011	16.2	0.1	2.8	3	0	0	3	3	2	0	AAA	domain
ATP_bind_1	PF03029.17	gi|336252706|ref|YP_004595813.1|	-	0.02	14.7	0.0	0.036	13.9	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
KTI12	PF08433.10	gi|336252706|ref|YP_004595813.1|	-	0.022	14.2	0.0	0.034	13.6	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_24	PF13479.6	gi|336252706|ref|YP_004595813.1|	-	0.027	14.2	0.0	0.048	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|336252706|ref|YP_004595813.1|	-	0.031	13.3	0.0	0.064	12.2	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PPK2	PF03976.14	gi|336252706|ref|YP_004595813.1|	-	0.05	13.1	0.0	0.08	12.4	0.0	1.2	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
AAA_19	PF13245.6	gi|336252706|ref|YP_004595813.1|	-	0.054	13.8	0.1	0.1	12.9	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|336252706|ref|YP_004595813.1|	-	0.098	11.8	0.3	0.32	10.1	0.1	1.9	1	1	1	2	2	2	0	Anion-transporting	ATPase
AAA_29	PF13555.6	gi|336252706|ref|YP_004595813.1|	-	0.11	12.3	0.1	0.38	10.5	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|336252706|ref|YP_004595813.1|	-	0.2	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NIR_SIR	PF01077.22	gi|336252707|ref|YP_004595814.1|	-	1.7e-51	173.9	0.0	1.6e-37	128.5	0.0	2.3	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|336252707|ref|YP_004595814.1|	-	1.8e-27	95.0	0.1	1.8e-12	46.9	0.0	3.3	3	1	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DGC	PF08859.11	gi|336252707|ref|YP_004595814.1|	-	0.0063	16.6	0.1	0.24	11.5	0.0	2.5	2	0	0	2	2	2	1	DGC	domain
zf-HC2	PF13490.6	gi|336252707|ref|YP_004595814.1|	-	0.013	15.7	3.7	2.5	8.4	0.9	2.9	2	0	0	2	2	2	0	Putative	zinc-finger
Toxin_TOLIP	PF00087.21	gi|336252707|ref|YP_004595814.1|	-	0.17	12.2	1.6	15	5.9	0.0	3.1	3	0	0	3	3	3	0	Snake	toxin	and	toxin-like	protein
FrhB_FdhB_C	PF04432.13	gi|336252708|ref|YP_004595815.1|	-	2.4e-29	102.2	0.0	5.3e-29	101.0	0.0	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|336252708|ref|YP_004595815.1|	-	6.5e-20	71.1	0.1	1.4e-19	70.0	0.1	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4_21	PF14697.6	gi|336252708|ref|YP_004595815.1|	-	1.3e-09	38.1	5.9	1.3e-09	38.1	5.9	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336252708|ref|YP_004595815.1|	-	3.2e-09	36.2	18.0	5.6e-07	29.1	4.2	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336252708|ref|YP_004595815.1|	-	3.6e-09	37.4	2.1	0.0057	17.6	0.1	3.7	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|336252708|ref|YP_004595815.1|	-	2.1e-08	34.1	6.5	2.1e-08	34.1	6.5	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336252708|ref|YP_004595815.1|	-	3.3e-08	33.5	7.6	6.8e-08	32.5	4.9	2.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252708|ref|YP_004595815.1|	-	6.3e-06	26.7	21.3	0.00029	21.4	10.9	3.3	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336252708|ref|YP_004595815.1|	-	7.8e-06	25.7	3.7	7.8e-06	25.7	3.7	3.2	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|336252708|ref|YP_004595815.1|	-	4.8e-05	23.2	3.3	4.8e-05	23.2	3.3	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336252708|ref|YP_004595815.1|	-	9.6e-05	22.9	7.3	0.014	15.9	0.2	2.9	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|336252708|ref|YP_004595815.1|	-	0.0015	18.9	21.3	0.0015	18.9	4.2	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336252708|ref|YP_004595815.1|	-	0.0057	16.8	2.0	0.0057	16.8	2.0	1.8	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|336252708|ref|YP_004595815.1|	-	0.0067	16.9	13.7	0.11	13.1	4.3	3.1	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|336252708|ref|YP_004595815.1|	-	0.048	14.6	4.7	0.048	14.6	4.7	3.1	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|336252708|ref|YP_004595815.1|	-	0.092	13.2	14.6	0.55	10.7	3.9	3.2	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
PAP2	PF01569.21	gi|336252709|ref|YP_004595816.1|	-	1.2e-17	63.9	2.2	1.2e-17	63.9	2.2	2.2	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|336252709|ref|YP_004595816.1|	-	2.1e-08	34.1	6.4	2.1e-08	34.1	6.4	1.9	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.6	gi|336252709|ref|YP_004595816.1|	-	0.04	14.5	0.3	0.11	13.1	0.3	1.7	1	0	0	1	1	1	0	PAP2	superfamily	C-terminal
LPG_synthase_TM	PF03706.13	gi|336252709|ref|YP_004595816.1|	-	0.26	10.8	27.3	0.69	9.4	5.8	2.5	1	1	1	2	2	2	0	Lysylphosphatidylglycerol	synthase	TM	region
Bactofilin	PF04519.13	gi|336252710|ref|YP_004595817.1|	-	3.8e-10	39.9	9.3	1.2e-08	35.1	9.2	2.2	1	1	0	1	1	1	1	Polymer-forming	cytoskeletal
Phage_spike	PF18715.1	gi|336252710|ref|YP_004595817.1|	-	0.00031	20.8	1.7	0.65	10.1	0.0	2.8	2	1	0	2	2	2	2	Phage	spike	trimer
FapA	PF03961.13	gi|336252710|ref|YP_004595817.1|	-	0.16	10.6	9.9	0.35	9.4	8.9	1.7	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
Hexapep	PF00132.24	gi|336252710|ref|YP_004595817.1|	-	0.54	10.1	4.7	0.53	10.1	0.9	2.7	3	0	0	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
TAT_signal	PF10518.9	gi|336252710|ref|YP_004595817.1|	-	6.3	6.8	9.3	0.88	9.5	4.0	2.3	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Acetyltransf_4	PF13420.7	gi|336252711|ref|YP_004595818.1|	-	3.1e-34	118.4	0.0	3.6e-34	118.1	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336252711|ref|YP_004595818.1|	-	2.2e-14	53.7	0.1	3.4e-14	53.1	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336252711|ref|YP_004595818.1|	-	3.1e-10	40.1	0.0	4.4e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336252711|ref|YP_004595818.1|	-	3.2e-09	37.1	0.1	4.8e-09	36.5	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336252711|ref|YP_004595818.1|	-	4.2e-09	37.2	0.0	5.7e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336252711|ref|YP_004595818.1|	-	0.003	17.5	0.0	0.0055	16.6	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Abhydrolase_2	PF02230.16	gi|336252712|ref|YP_004595819.1|	-	1.2e-22	80.8	0.0	4.9e-22	78.8	0.0	1.7	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
DLH	PF01738.18	gi|336252712|ref|YP_004595819.1|	-	5e-10	39.3	0.0	6.9e-10	38.8	0.0	1.2	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|336252712|ref|YP_004595819.1|	-	8.9e-08	31.7	0.8	0.094	12.0	0.0	3.1	2	1	1	3	3	3	3	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|336252712|ref|YP_004595819.1|	-	1.3e-05	24.8	0.8	0.049	13.1	0.0	3.1	3	0	0	3	3	3	2	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|336252712|ref|YP_004595819.1|	-	0.00048	19.8	0.0	0.0016	18.1	0.0	1.8	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Esterase_phd	PF10503.9	gi|336252712|ref|YP_004595819.1|	-	0.00082	18.9	0.0	0.00098	18.7	0.0	1.2	1	0	0	1	1	1	1	Esterase	PHB	depolymerase
FSH1	PF03959.13	gi|336252712|ref|YP_004595819.1|	-	0.0019	17.9	0.0	0.0033	17.1	0.0	1.3	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_3	PF07859.13	gi|336252712|ref|YP_004595819.1|	-	0.0021	18.0	0.2	1.6	8.5	0.0	2.4	1	1	0	2	2	2	2	alpha/beta	hydrolase	fold
PE-PPE	PF08237.11	gi|336252712|ref|YP_004595819.1|	-	0.0028	17.2	0.0	0.0041	16.7	0.0	1.3	1	0	0	1	1	1	1	PE-PPE	domain
Palm_thioest	PF02089.15	gi|336252712|ref|YP_004595819.1|	-	0.022	14.6	0.0	0.025	14.4	0.0	1.2	1	0	0	1	1	1	0	Palmitoyl	protein	thioesterase
DUF829	PF05705.14	gi|336252712|ref|YP_004595819.1|	-	0.18	11.6	0.0	0.59	10.0	0.0	1.6	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF829)
DUF3243	PF11588.8	gi|336252712|ref|YP_004595819.1|	-	0.19	12.0	0.0	3.9	7.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3243)
Cutinase	PF01083.22	gi|336252712|ref|YP_004595819.1|	-	0.2	11.6	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	Cutinase
Glyoxalase	PF00903.25	gi|336252713|ref|YP_004595820.1|	-	6.8e-10	39.2	0.1	1e-09	38.6	0.1	1.3	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|336252713|ref|YP_004595820.1|	-	1.4e-05	25.3	0.0	2.5e-05	24.5	0.0	1.6	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF3880	PF12996.7	gi|336252713|ref|YP_004595820.1|	-	0.086	12.9	0.0	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	DUF	based	on	E.	rectale	Gene	description	(DUF3880)
Pyr_redox_2	PF07992.14	gi|336252714|ref|YP_004595821.1|	-	2.4e-23	82.8	13.5	5.2e-13	48.9	2.6	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252714|ref|YP_004595821.1|	-	5.8e-12	45.5	1.4	1.5e-06	27.8	0.1	2.6	1	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336252714|ref|YP_004595821.1|	-	4.6e-11	42.9	1.9	5.7e-05	22.9	0.1	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|336252714|ref|YP_004595821.1|	-	9.8e-10	37.7	0.3	3.5e-05	22.7	0.1	2.2	1	1	1	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|336252714|ref|YP_004595821.1|	-	7e-09	35.4	1.5	4.2e-05	22.9	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|336252714|ref|YP_004595821.1|	-	5.6e-07	29.0	3.2	5.9e-06	25.6	0.3	2.2	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|336252714|ref|YP_004595821.1|	-	7.6e-07	28.6	3.7	2.2e-05	23.7	0.3	2.7	1	1	1	3	3	3	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|336252714|ref|YP_004595821.1|	-	5.5e-06	26.5	0.9	0.0049	16.9	0.1	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|336252714|ref|YP_004595821.1|	-	2.8e-05	24.3	0.0	6.4e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|336252714|ref|YP_004595821.1|	-	0.00011	21.5	0.2	0.00018	20.8	0.2	1.6	1	1	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.7	gi|336252714|ref|YP_004595821.1|	-	0.00028	20.3	0.2	0.00028	20.3	0.2	1.7	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336252714|ref|YP_004595821.1|	-	0.00064	18.9	1.1	0.062	12.3	0.1	2.1	1	1	1	2	2	2	2	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|336252714|ref|YP_004595821.1|	-	0.002	17.4	0.3	0.0037	16.6	0.2	1.5	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|336252714|ref|YP_004595821.1|	-	0.0036	17.8	0.4	0.019	15.5	0.4	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|336252714|ref|YP_004595821.1|	-	0.015	14.6	0.1	0.11	11.7	0.0	1.9	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
Trp_halogenase	PF04820.14	gi|336252714|ref|YP_004595821.1|	-	0.02	13.8	3.9	0.83	8.4	0.4	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
K_oxygenase	PF13434.6	gi|336252714|ref|YP_004595821.1|	-	0.032	13.4	0.2	2.2	7.3	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
XdhC_C	PF13478.6	gi|336252714|ref|YP_004595821.1|	-	0.073	13.6	0.0	0.16	12.5	0.0	1.5	1	1	0	1	1	1	0	XdhC	Rossmann	domain
GCS2	PF04107.13	gi|336252715|ref|YP_004595822.1|	-	4.6e-11	42.6	0.8	1.4e-10	41.0	0.8	1.6	1	1	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
AAT	PF03417.16	gi|336252716|ref|YP_004595823.1|	-	6.3e-16	58.8	0.0	9.5e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	Acyl-coenzyme	A:6-aminopenicillanic	acid	acyl-transferase
CBAH	PF02275.18	gi|336252716|ref|YP_004595823.1|	-	0.0096	15.6	0.0	0.029	14.0	0.0	1.7	1	1	0	1	1	1	1	Linear	amide	C-N	hydrolases,	choloylglycine	hydrolase	family
PSK_trans_fac	PF07704.11	gi|336252716|ref|YP_004595823.1|	-	2.6	8.9	7.9	5.3	7.9	4.0	2.6	2	0	0	2	2	2	0	Rv0623-like	transcription	factor
Pilin_N	PF07790.11	gi|336252717|ref|YP_004595824.1|	-	1.9e-16	60.7	5.2	3.9e-16	59.7	5.2	1.7	1	1	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Phage_integrase	PF00589.22	gi|336252718|ref|YP_004595825.1|	-	1.8e-10	40.9	0.0	6.7e-10	39.0	0.0	1.9	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|336252718|ref|YP_004595825.1|	-	2.1e-06	27.9	0.1	5.8e-06	26.5	0.1	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|336252718|ref|YP_004595825.1|	-	0.026	15.0	0.1	0.18	12.3	0.1	2.3	1	1	1	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|336252718|ref|YP_004595825.1|	-	0.099	13.0	0.0	0.42	11.0	0.0	1.9	2	0	0	2	2	2	0	Phage	integrase	SAM-like	domain
HTH_27	PF13463.6	gi|336252719|ref|YP_004595826.1|	-	8.2e-05	23.0	0.0	0.00038	20.9	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|336252719|ref|YP_004595826.1|	-	0.0016	18.5	0.1	0.0024	17.9	0.1	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
RQC	PF09382.10	gi|336252719|ref|YP_004595826.1|	-	0.013	15.3	0.0	0.017	14.9	0.0	1.1	1	0	0	1	1	1	0	RQC	domain
PaaX	PF07848.12	gi|336252719|ref|YP_004595826.1|	-	0.018	15.2	0.0	0.029	14.6	0.0	1.4	1	1	0	1	1	1	0	PaaX-like	protein
HTH_45	PF14947.6	gi|336252719|ref|YP_004595826.1|	-	0.022	14.8	0.0	0.033	14.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|336252719|ref|YP_004595826.1|	-	0.023	14.5	0.0	0.033	14.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.6	gi|336252719|ref|YP_004595826.1|	-	0.034	13.7	0.0	0.11	12.0	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Mrr_N	PF14338.6	gi|336252719|ref|YP_004595826.1|	-	0.046	13.9	0.0	0.077	13.1	0.0	1.5	1	0	0	1	1	1	0	Mrr	N-terminal	domain
Replic_Relax	PF13814.6	gi|336252719|ref|YP_004595826.1|	-	0.048	13.7	0.0	0.057	13.5	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
PadR	PF03551.14	gi|336252719|ref|YP_004595826.1|	-	0.052	13.5	0.0	0.086	12.8	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
YjhX_toxin	PF09857.9	gi|336252719|ref|YP_004595826.1|	-	0.086	12.8	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Putative	toxin	of	bacterial	toxin-antitoxin	pair
HTH_28	PF13518.6	gi|336252720|ref|YP_004595827.1|	-	0.11	12.6	0.5	0.45	10.7	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
Pilin_N	PF07790.11	gi|336252721|ref|YP_004595828.1|	-	2e-16	60.6	6.0	2.9e-16	60.1	6.0	1.6	1	1	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
PGF-CTERM	PF18204.1	gi|336252724|ref|YP_004595831.1|	-	0.012	15.6	3.4	0.012	15.6	3.4	1.9	2	0	0	2	2	2	0	PGF-CTERM	motif
DUF4019	PF13211.6	gi|336252724|ref|YP_004595831.1|	-	0.074	13.5	0.2	0.12	12.8	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4019)
DUF1177	PF06675.11	gi|336252724|ref|YP_004595831.1|	-	0.1	11.4	0.7	0.17	10.7	0.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1177)
DUF2099	PF09872.9	gi|336252726|ref|YP_004595833.1|	-	0.076	12.2	0.1	0.21	10.8	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2099)
DUF2244	PF10003.9	gi|336252726|ref|YP_004595833.1|	-	0.43	10.3	2.1	0.43	10.2	0.1	1.9	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
T4_Rnl2_C	PF18043.1	gi|336252727|ref|YP_004595834.1|	-	0.018	15.2	0.2	0.042	14.0	0.1	1.8	1	1	0	1	1	1	0	T4	RNA	ligase	2	C-terminal
Arc_PepC_II	PF06847.11	gi|336252727|ref|YP_004595834.1|	-	0.93	10.1	2.8	13	6.3	1.2	2.4	2	0	0	2	2	2	0	Archaeal	Peptidase	A24	C-terminus	Type	II
Sigma54_activ_2	PF14532.6	gi|336252728|ref|YP_004595835.1|	-	0.018	15.2	0.0	0.031	14.4	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
HTH_28	PF13518.6	gi|336252728|ref|YP_004595835.1|	-	0.11	12.6	0.0	0.26	11.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|336252730|ref|YP_004595837.1|	-	0.0005	19.8	0.3	0.0009	19.0	0.3	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|336252730|ref|YP_004595837.1|	-	0.0084	15.8	0.0	0.019	14.7	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Tnp_1_2	PF13022.6	gi|336252730|ref|YP_004595837.1|	-	0.14	12.3	0.0	0.35	11.0	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
DUF4330	PF14221.6	gi|336252732|ref|YP_004595839.1|	-	0.037	14.3	0.0	0.047	13.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4330)
LptC	PF06835.13	gi|336252732|ref|YP_004595839.1|	-	0.068	12.7	0.0	0.078	12.5	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide-assembly,	LptC-related
HTH_38	PF13936.6	gi|336252733|ref|YP_004595840.1|	-	0.082	12.7	0.0	0.19	11.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
zf-ribbon_3	PF13248.6	gi|336252734|ref|YP_004595841.1|	-	0.00013	21.2	2.6	0.042	13.3	0.1	2.1	1	1	1	2	2	2	2	zinc-ribbon	domain
zf-C2H2_6	PF13912.6	gi|336252734|ref|YP_004595841.1|	-	0.0011	18.9	0.9	0.29	11.2	0.1	2.1	2	0	0	2	2	2	2	C2H2-type	zinc	finger
C1_2	PF03107.16	gi|336252734|ref|YP_004595841.1|	-	0.0036	17.6	0.9	0.0042	17.4	0.9	1.1	1	0	0	1	1	1	1	C1	domain
zf-HIT	PF04438.16	gi|336252734|ref|YP_004595841.1|	-	0.0069	16.2	1.1	0.0082	16.0	1.1	1.2	1	0	0	1	1	1	1	HIT	zinc	finger
Rubredoxin_2	PF18073.1	gi|336252734|ref|YP_004595841.1|	-	0.0074	16.0	2.2	0.12	12.1	0.3	2.1	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|336252734|ref|YP_004595841.1|	-	0.015	15.3	0.9	0.016	15.2	0.9	1.1	1	0	0	1	1	1	0	zinc-ribbons
Ogr_Delta	PF04606.12	gi|336252734|ref|YP_004595841.1|	-	0.017	15.1	0.9	1.6	8.8	0.0	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-C4_Topoisom	PF01396.19	gi|336252734|ref|YP_004595841.1|	-	0.02	14.7	1.2	0.34	10.7	0.0	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
tRNA-synt_1g	PF09334.11	gi|336252734|ref|YP_004595841.1|	-	0.031	13.0	0.9	0.031	13.0	0.9	1.0	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
Zn-ribbon_8	PF09723.10	gi|336252734|ref|YP_004595841.1|	-	0.056	13.6	5.7	1	9.5	0.5	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|336252734|ref|YP_004595841.1|	-	0.41	10.7	8.7	14	5.9	0.8	2.9	1	1	1	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Nudix_N_2	PF14803.6	gi|336252734|ref|YP_004595841.1|	-	0.7	9.9	6.2	0.19	11.7	1.3	1.9	2	0	0	2	2	2	0	Nudix	N-terminal
zf-H2C2_2	PF13465.6	gi|336252734|ref|YP_004595841.1|	-	1.7	9.2	4.6	16	6.1	0.2	2.1	1	1	1	2	2	2	0	Zinc-finger	double	domain
Chlam_OMP3	PF03503.13	gi|336252735|ref|YP_004595842.1|	-	0.074	13.4	0.0	7	7.0	0.0	2.4	2	0	0	2	2	2	0	Chlamydia	cysteine-rich	outer	membrane	protein	3
zinc_ribbon_9	PF14369.6	gi|336252736|ref|YP_004595843.1|	-	0.014	15.6	0.9	2.6	8.4	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon
FdhE	PF04216.12	gi|336252736|ref|YP_004595843.1|	-	0.15	11.9	0.0	0.17	11.8	0.0	1.0	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
DUF373	PF04123.13	gi|336252737|ref|YP_004595844.1|	-	5.4	6.4	8.1	5.7	6.3	8.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
Adeno_E3_CR2	PF02439.15	gi|336252737|ref|YP_004595844.1|	-	6.1	6.7	7.1	9.7	6.1	2.9	2.1	2	0	0	2	2	2	0	Adenovirus	E3	region	protein	CR2
AAA_17	PF13207.6	gi|336252738|ref|YP_004595845.1|	-	9.7e-17	61.7	0.2	1.7e-16	60.9	0.2	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|336252738|ref|YP_004595845.1|	-	3.8e-10	40.4	0.0	5.8e-10	39.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|336252738|ref|YP_004595845.1|	-	7e-05	23.0	0.1	0.0001	22.5	0.1	1.2	1	0	0	1	1	1	1	Adenylate	kinase
AAA_33	PF13671.6	gi|336252738|ref|YP_004595845.1|	-	0.00012	22.3	0.0	0.00026	21.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
PEP-utilizers	PF00391.23	gi|336252738|ref|YP_004595845.1|	-	0.042	13.6	0.2	0.12	12.2	0.2	1.7	1	1	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
RNA_binding	PF01877.17	gi|336252739|ref|YP_004595846.1|	-	1.8e-10	41.1	0.3	1.4e-09	38.3	0.3	2.1	1	1	0	1	1	1	1	RNA	binding
YkyA	PF10368.9	gi|336252740|ref|YP_004595847.1|	-	0.0031	17.2	1.6	0.16	11.6	0.0	3.0	2	1	1	3	3	3	1	Putative	cell-wall	binding	lipoprotein
Spc7	PF08317.11	gi|336252740|ref|YP_004595847.1|	-	0.0065	15.4	6.4	0.3	9.9	1.1	2.3	1	1	1	2	2	2	2	Spc7	kinetochore	protein
DUF4200	PF13863.6	gi|336252740|ref|YP_004595847.1|	-	0.069	13.6	0.4	17	5.8	0.0	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
Prefoldin_2	PF01920.20	gi|336252740|ref|YP_004595847.1|	-	0.1	12.6	1.4	1.1	9.3	0.2	2.4	1	1	0	2	2	2	0	Prefoldin	subunit
CENP-F_leu_zip	PF10473.9	gi|336252740|ref|YP_004595847.1|	-	0.21	11.6	8.5	0.11	12.5	1.1	2.7	2	1	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Phage_holin_7_1	PF16081.5	gi|336252740|ref|YP_004595847.1|	-	4	7.6	12.1	3.3	7.9	1.9	3.2	3	1	0	3	3	3	0	Mycobacterial	2	TMS	Phage	Holin	(M2	Hol)	Family
SRP54	PF00448.22	gi|336252741|ref|YP_004595848.1|	-	7.1e-64	215.1	0.1	1.4e-63	214.1	0.1	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|336252741|ref|YP_004595848.1|	-	2.8e-28	98.4	5.3	2.8e-28	98.4	5.3	3.2	2	1	1	3	3	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|336252741|ref|YP_004595848.1|	-	3.3e-17	62.5	1.6	6.3e-17	61.6	0.2	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
CARD	PF00619.21	gi|336252741|ref|YP_004595848.1|	-	0.0011	19.0	0.3	0.26	11.3	0.1	2.5	2	0	0	2	2	2	1	Caspase	recruitment	domain
CbiA	PF01656.23	gi|336252741|ref|YP_004595848.1|	-	0.0013	18.8	0.0	0.0042	17.1	0.0	2.0	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|336252741|ref|YP_004595848.1|	-	0.0018	17.6	0.4	0.018	14.3	0.0	2.6	3	0	0	3	3	3	1	Zeta	toxin
cobW	PF02492.19	gi|336252741|ref|YP_004595848.1|	-	0.0019	17.8	0.8	0.023	14.3	0.8	2.4	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|336252741|ref|YP_004595848.1|	-	0.0055	17.0	0.0	0.38	11.0	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
DUF2202	PF09968.9	gi|336252741|ref|YP_004595848.1|	-	0.01	15.7	0.1	0.028	14.3	0.1	1.8	1	0	0	1	1	1	0	Uncharacterized	protein	domain	(DUF2202)
AAA_24	PF13479.6	gi|336252741|ref|YP_004595848.1|	-	0.02	14.6	0.1	0.063	13.0	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.20	gi|336252741|ref|YP_004595848.1|	-	0.041	13.8	0.0	0.096	12.6	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
SMC_N	PF02463.19	gi|336252741|ref|YP_004595848.1|	-	0.049	13.1	0.0	0.086	12.3	0.0	1.4	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
KdpC	PF02669.15	gi|336252741|ref|YP_004595848.1|	-	0.054	13.3	0.1	0.12	12.2	0.1	1.5	1	0	0	1	1	1	0	K+-transporting	ATPase,	c	chain
ArsA_ATPase	PF02374.15	gi|336252741|ref|YP_004595848.1|	-	0.076	12.2	0.0	0.076	12.2	0.0	2.8	3	0	0	3	3	3	0	Anion-transporting	ATPase
AAA_33	PF13671.6	gi|336252741|ref|YP_004595848.1|	-	0.11	12.6	0.0	0.32	11.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Tex_YqgF	PF16921.5	gi|336252741|ref|YP_004595848.1|	-	0.15	12.5	0.3	0.35	11.3	0.0	1.8	2	0	0	2	2	1	0	Tex	protein	YqgF-like	domain
AAA_25	PF13481.6	gi|336252741|ref|YP_004595848.1|	-	0.25	10.9	2.0	1.2	8.7	2.0	2.2	1	1	0	1	1	1	0	AAA	domain
DUF4618	PF15397.6	gi|336252741|ref|YP_004595848.1|	-	2.6	7.4	8.4	0.1	12.0	1.1	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4618)
HAD_2	PF13419.6	gi|336252742|ref|YP_004595849.1|	-	1.9e-12	47.6	0.0	2.5e-12	47.2	0.0	1.3	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252742|ref|YP_004595849.1|	-	1.5e-11	45.0	2.8	4.2e-11	43.5	2.8	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336252742|ref|YP_004595849.1|	-	0.00019	21.9	0.4	0.00022	21.7	0.4	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252742|ref|YP_004595849.1|	-	0.00038	20.5	0.0	0.0013	18.7	0.0	2.0	1	0	0	1	1	1	1	HAD-hyrolase-like
Usp	PF00582.26	gi|336252744|ref|YP_004595851.1|	-	1.6e-61	206.9	13.8	3.6e-32	111.8	2.1	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
Glyco_trans_4_5	PF16994.5	gi|336252744|ref|YP_004595851.1|	-	0.12	12.0	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	Glycosyl-transferase	family	4
EMC3_TMCO1	PF01956.16	gi|336252745|ref|YP_004595852.1|	-	2.9e-20	72.7	0.0	4e-20	72.2	0.0	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
Pyr_redox_2	PF07992.14	gi|336252746|ref|YP_004595853.1|	-	2.3e-47	161.7	0.9	4.1e-47	160.8	0.7	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|336252746|ref|YP_004595853.1|	-	5e-27	94.3	0.0	8.5e-27	93.6	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|336252746|ref|YP_004595853.1|	-	1.1e-16	61.1	0.8	2.6e-13	50.3	0.0	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252746|ref|YP_004595853.1|	-	1.5e-07	30.9	0.2	3e-05	23.5	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|336252746|ref|YP_004595853.1|	-	4.1e-07	29.5	0.0	2.1e-05	23.8	0.0	2.8	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|336252746|ref|YP_004595853.1|	-	1.6e-06	27.5	1.0	3.8e-06	26.2	0.1	1.9	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|336252746|ref|YP_004595853.1|	-	0.00038	19.7	4.2	0.66	9.0	0.0	2.4	2	0	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336252746|ref|YP_004595853.1|	-	0.0052	16.2	1.1	0.0084	15.5	1.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|336252746|ref|YP_004595853.1|	-	0.0081	16.1	1.7	0.82	9.5	0.1	3.1	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336252746|ref|YP_004595853.1|	-	0.13	11.8	0.1	0.25	10.9	0.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DAO	PF01266.24	gi|336252746|ref|YP_004595853.1|	-	0.15	11.6	7.1	1.1	8.8	2.5	2.7	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Aldo_ket_red	PF00248.21	gi|336252747|ref|YP_004595854.1|	-	2e-52	178.3	0.0	2.2e-50	171.5	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Ish1	PF10281.9	gi|336252747|ref|YP_004595854.1|	-	0.029	14.7	0.1	1.5	9.2	0.0	2.7	2	0	0	2	2	2	0	Putative	stress-responsive	nuclear	envelope	protein
DoxX	PF07681.12	gi|336252748|ref|YP_004595855.1|	-	4.9e-09	36.7	12.9	4.9e-09	36.7	12.9	2.2	1	1	1	2	2	2	1	DoxX
DoxD	PF04173.13	gi|336252748|ref|YP_004595855.1|	-	0.00032	20.7	5.0	0.00051	20.0	5.0	1.3	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
VKG_Carbox	PF05090.14	gi|336252748|ref|YP_004595855.1|	-	1.1	8.0	5.5	2	7.2	5.5	1.5	1	1	0	1	1	1	0	Vitamin	K-dependent	gamma-carboxylase
HTH_20	PF12840.7	gi|336252749|ref|YP_004595856.1|	-	1.8e-09	37.5	0.0	3.1e-09	36.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336252749|ref|YP_004595856.1|	-	0.00018	21.3	0.0	0.00037	20.3	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336252749|ref|YP_004595856.1|	-	0.00088	19.0	0.2	0.0026	17.5	0.0	1.9	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336252749|ref|YP_004595856.1|	-	0.039	13.8	0.0	0.077	12.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF742	PF05331.11	gi|336252749|ref|YP_004595856.1|	-	0.06	13.2	0.1	0.092	12.6	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_7	PF02796.15	gi|336252749|ref|YP_004595856.1|	-	0.08	13.0	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.12	gi|336252749|ref|YP_004595856.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_5	PF01022.20	gi|336252749|ref|YP_004595856.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|336252749|ref|YP_004595856.1|	-	0.14	11.7	0.0	0.33	10.5	0.0	1.8	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Rhodanese	PF00581.20	gi|336252750|ref|YP_004595857.1|	-	2e-41	140.9	0.0	8.4e-21	74.5	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.20	gi|336252751|ref|YP_004595858.1|	-	1.1e-36	125.6	0.5	6.7e-19	68.4	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
TrmB	PF01978.19	gi|336252752|ref|YP_004595859.1|	-	0.0015	18.4	0.0	0.0026	17.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336252752|ref|YP_004595859.1|	-	0.0024	17.9	0.1	0.029	14.5	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|336252752|ref|YP_004595859.1|	-	0.062	13.0	0.1	3.8	7.3	0.2	2.4	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
RP-C	PF03428.13	gi|336252752|ref|YP_004595859.1|	-	0.079	12.6	4.2	0.2	11.3	0.5	2.4	2	1	0	2	2	2	0	Replication	protein	C	N-terminal	domain
Rubrerythrin	PF02915.17	gi|336252755|ref|YP_004595862.1|	-	0.00071	20.0	1.6	0.03	14.7	0.3	2.3	2	0	0	2	2	2	2	Rubrerythrin
HEAT_2	PF13646.6	gi|336252755|ref|YP_004595862.1|	-	0.082	13.3	2.2	15	6.1	0.1	3.1	2	1	1	3	3	3	0	HEAT	repeats
TPR_7	PF13176.6	gi|336252755|ref|YP_004595862.1|	-	1.4	9.1	4.3	1	9.5	0.4	2.5	2	1	0	2	2	2	0	Tetratricopeptide	repeat
HK	PF02110.15	gi|336252758|ref|YP_004595865.1|	-	1.4e-66	224.4	1.4	1.6e-66	224.2	1.4	1.0	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Carb_kinase	PF01256.17	gi|336252758|ref|YP_004595865.1|	-	1.6e-06	27.8	0.6	2.1e-06	27.4	0.6	1.1	1	0	0	1	1	1	1	Carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|336252758|ref|YP_004595865.1|	-	1.9e-05	24.2	0.2	2.9e-05	23.6	0.2	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
AP_endonuc_2	PF01261.24	gi|336252758|ref|YP_004595865.1|	-	0.038	13.4	0.0	0.056	12.9	0.0	1.4	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
TMP-TENI	PF02581.17	gi|336252759|ref|YP_004595866.1|	-	2e-62	209.7	4.0	2.5e-62	209.4	4.0	1.1	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|336252759|ref|YP_004595866.1|	-	2.9e-07	30.2	8.4	3.8e-07	29.8	8.4	1.1	1	0	0	1	1	1	1	Nitronate	monooxygenase
ThiG	PF05690.14	gi|336252759|ref|YP_004595866.1|	-	0.00017	21.0	4.4	0.0004	19.8	4.4	1.6	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|336252759|ref|YP_004595866.1|	-	0.012	14.8	1.4	0.021	14.1	1.4	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
DUF561	PF04481.12	gi|336252759|ref|YP_004595866.1|	-	0.079	12.1	0.6	0.17	11.0	0.6	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF561)
Copper-bind	PF00127.20	gi|336252760|ref|YP_004595867.1|	-	0.19	12.2	0.0	0.28	11.7	0.0	1.2	1	0	0	1	1	1	0	Copper	binding	proteins,	plastocyanin/azurin	family
Usp	PF00582.26	gi|336252761|ref|YP_004595868.1|	-	6.1e-34	117.5	6.1	7.3e-34	117.3	6.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|336252761|ref|YP_004595868.1|	-	0.027	14.7	4.0	0.048	13.9	3.9	1.4	1	1	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
PSK_trans_fac	PF07704.11	gi|336252761|ref|YP_004595868.1|	-	0.32	11.8	6.0	0.44	11.3	4.7	1.9	1	1	1	2	2	2	0	Rv0623-like	transcription	factor
Peptidase_M29	PF02073.15	gi|336252762|ref|YP_004595869.1|	-	1.8e-69	234.5	0.1	2.3e-69	234.2	0.1	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
HTH_10	PF04967.12	gi|336252765|ref|YP_004595872.1|	-	2.6e-11	43.1	0.0	5.3e-11	42.1	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Ribo_biogen_C	PF04034.13	gi|336252765|ref|YP_004595872.1|	-	0.092	12.5	0.0	0.14	11.9	0.0	1.2	1	0	0	1	1	1	0	Ribosome	biogenesis	protein,	C-terminal
Methyltransf_31	PF13847.6	gi|336252766|ref|YP_004595873.1|	-	3.8e-20	72.2	0.0	4.4e-20	72.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252766|ref|YP_004595873.1|	-	1.1e-19	70.9	0.0	1.9e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336252766|ref|YP_004595873.1|	-	4.1e-16	59.5	0.0	6.3e-16	58.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336252766|ref|YP_004595873.1|	-	9.2e-16	58.3	0.0	2.1e-15	57.2	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336252766|ref|YP_004595873.1|	-	1.4e-13	51.0	0.0	1.9e-13	50.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336252766|ref|YP_004595873.1|	-	2.4e-13	50.3	0.0	4.4e-13	49.5	0.0	1.4	2	0	0	2	2	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.18	gi|336252766|ref|YP_004595873.1|	-	1.1e-12	47.8	0.0	1.3e-12	47.5	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
NodS	PF05401.11	gi|336252766|ref|YP_004595873.1|	-	9.4e-07	28.6	0.0	1.3e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
GCD14	PF08704.10	gi|336252766|ref|YP_004595873.1|	-	4.3e-06	26.6	0.0	5.6e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.20	gi|336252766|ref|YP_004595873.1|	-	9.6e-06	25.1	0.0	1.3e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltr_RsmB-F	PF01189.17	gi|336252766|ref|YP_004595873.1|	-	4.1e-05	23.3	0.0	6e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
MTS	PF05175.14	gi|336252766|ref|YP_004595873.1|	-	7.5e-05	22.3	0.0	0.00015	21.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
FtsJ	PF01728.19	gi|336252766|ref|YP_004595873.1|	-	0.0024	18.0	0.0	0.0039	17.3	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_4	PF02390.17	gi|336252766|ref|YP_004595873.1|	-	0.0025	17.3	0.0	0.0035	16.8	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
RrnaAD	PF00398.20	gi|336252766|ref|YP_004595873.1|	-	0.0025	16.9	0.0	0.0034	16.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
TehB	PF03848.14	gi|336252766|ref|YP_004595873.1|	-	0.0044	16.4	0.0	0.0072	15.8	0.0	1.3	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
PrmA	PF06325.13	gi|336252766|ref|YP_004595873.1|	-	0.0049	16.3	0.0	0.0067	15.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Fibrillarin	PF01269.17	gi|336252766|ref|YP_004595873.1|	-	0.0097	15.0	0.0	0.014	14.5	0.0	1.2	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_3	PF01596.17	gi|336252766|ref|YP_004595873.1|	-	0.014	14.6	0.0	0.019	14.2	0.0	1.1	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_18	PF12847.7	gi|336252766|ref|YP_004595873.1|	-	0.045	13.7	0.0	0.07	13.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|336252766|ref|YP_004595873.1|	-	0.072	12.7	0.0	0.095	12.3	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.6	gi|336252766|ref|YP_004595873.1|	-	0.1	12.6	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|336252766|ref|YP_004595873.1|	-	0.12	12.1	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Pox_MCEL	PF03291.16	gi|336252766|ref|YP_004595873.1|	-	0.25	10.4	0.0	0.31	10.1	0.0	1.2	1	0	0	1	1	1	0	mRNA	capping	enzyme
Beta_elim_lyase	PF01212.21	gi|336252767|ref|YP_004595874.1|	-	3.9e-86	289.0	0.3	4.5e-86	288.7	0.3	1.0	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|336252767|ref|YP_004595874.1|	-	2.1e-05	24.0	0.1	0.0073	15.7	0.0	2.8	3	0	0	3	3	3	2	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|336252767|ref|YP_004595874.1|	-	0.28	9.7	0.5	0.39	9.2	0.0	1.5	2	0	0	2	2	2	0	Cys/Met	metabolism	PLP-dependent	enzyme
DUF4083	PF13314.6	gi|336252768|ref|YP_004595875.1|	-	0.095	12.7	4.0	0.12	12.4	4.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4083)
Metallophos_2	PF12850.7	gi|336252769|ref|YP_004595876.1|	-	9.5e-26	91.0	1.3	1.2e-25	90.7	1.3	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336252769|ref|YP_004595876.1|	-	2.9e-06	27.9	0.5	0.013	16.0	0.0	2.2	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Cation_efflux	PF01545.21	gi|336252770|ref|YP_004595877.1|	-	6.8e-28	97.8	5.7	1.1e-27	97.0	5.7	1.4	1	1	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|336252770|ref|YP_004595877.1|	-	5.5e-07	29.6	0.0	9.6e-07	28.8	0.0	1.4	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
PKcGMP_CC	PF16808.5	gi|336252770|ref|YP_004595877.1|	-	0.13	12.2	1.9	0.22	11.4	1.9	1.3	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Helicase_C_2	PF13307.6	gi|336252772|ref|YP_004595879.1|	-	4.5e-29	101.8	0.0	1.3e-28	100.3	0.0	1.8	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|336252772|ref|YP_004595879.1|	-	2e-20	73.1	0.2	4.2e-20	72.1	0.2	1.5	1	0	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|336252772|ref|YP_004595879.1|	-	2.3e-07	30.8	0.1	0.00046	20.0	0.0	3.3	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|336252772|ref|YP_004595879.1|	-	5.1e-07	29.9	0.1	4.1e-05	23.7	0.1	2.3	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
ATPase	PF06745.13	gi|336252772|ref|YP_004595879.1|	-	0.00042	19.7	0.0	0.00084	18.8	0.0	1.6	1	0	0	1	1	1	1	KaiC
HBB	PF06777.11	gi|336252772|ref|YP_004595879.1|	-	0.00058	19.6	0.0	0.0014	18.3	0.0	1.7	1	0	0	1	1	1	1	Helical	and	beta-bridge	domain
AAA_25	PF13481.6	gi|336252772|ref|YP_004595879.1|	-	0.0061	16.2	2.0	0.62	9.6	0.0	3.9	4	0	0	4	4	4	1	AAA	domain
PhoH	PF02562.16	gi|336252772|ref|YP_004595879.1|	-	0.023	14.2	0.0	0.068	12.6	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
DUF815	PF05673.13	gi|336252772|ref|YP_004595879.1|	-	0.027	13.6	0.0	0.052	12.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_34	PF13872.6	gi|336252772|ref|YP_004595879.1|	-	0.029	13.3	0.0	0.061	12.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
DUF2075	PF09848.9	gi|336252772|ref|YP_004595879.1|	-	0.046	13.0	0.3	1.9	7.7	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
ArsA_ATPase	PF02374.15	gi|336252772|ref|YP_004595879.1|	-	0.18	10.9	0.3	0.48	9.5	0.1	1.8	2	1	0	2	2	2	0	Anion-transporting	ATPase
CENP-H	PF05837.12	gi|336252772|ref|YP_004595879.1|	-	0.8	10.1	3.8	2.7	8.4	3.8	1.8	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF3247	PF11607.8	gi|336252773|ref|YP_004595880.1|	-	0.024	14.9	0.1	0.031	14.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3247)
Rhodanese	PF00581.20	gi|336252774|ref|YP_004595881.1|	-	1.7e-15	57.4	0.1	2.2e-15	57.1	0.1	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
TusA	PF01206.17	gi|336252775|ref|YP_004595882.1|	-	5e-12	45.5	0.0	7.2e-12	45.0	0.0	1.2	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Sulf_transp	PF04143.14	gi|336252776|ref|YP_004595883.1|	-	4.4e-57	194.0	31.5	4.4e-57	194.0	31.5	1.9	2	1	0	2	2	2	1	Sulphur	transport
2_5_RNA_ligase2	PF13563.6	gi|336252777|ref|YP_004595884.1|	-	1.5e-16	60.7	0.1	1.8e-16	60.4	0.1	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.16	gi|336252777|ref|YP_004595884.1|	-	1.2e-07	31.8	0.0	0.00014	21.9	0.0	2.4	3	0	0	3	3	3	2	LigT	like	Phosphoesterase
DUF2244	PF10003.9	gi|336252778|ref|YP_004595885.1|	-	0.062	13.0	3.1	0.066	12.9	3.1	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
DUF1654	PF07867.11	gi|336252779|ref|YP_004595886.1|	-	0.035	13.8	0.4	0.12	12.1	0.4	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1654)
DUF4897	PF16238.5	gi|336252779|ref|YP_004595886.1|	-	0.042	13.7	0.1	0.066	13.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4897)
Trp_oprn_chp	PF09534.10	gi|336252779|ref|YP_004595886.1|	-	0.042	13.6	2.3	3.1	7.6	0.3	2.3	2	0	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF3117	PF11314.8	gi|336252779|ref|YP_004595886.1|	-	0.11	12.4	1.0	0.87	9.4	0.5	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3117)
Arginosuc_synth	PF00764.19	gi|336252780|ref|YP_004595887.1|	-	4.3e-142	474.0	0.0	5e-142	473.8	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|336252780|ref|YP_004595887.1|	-	2.6e-05	23.8	0.0	5e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|336252780|ref|YP_004595887.1|	-	0.0026	16.6	0.0	0.0041	15.9	0.0	1.4	1	0	0	1	1	1	1	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|336252780|ref|YP_004595887.1|	-	0.0043	16.8	0.6	0.019	14.7	0.0	2.0	2	0	0	2	2	2	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|336252780|ref|YP_004595887.1|	-	0.03	13.4	0.0	0.047	12.8	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
SMC_hinge	PF06470.13	gi|336252780|ref|YP_004595887.1|	-	0.25	11.6	1.4	2.6	8.4	0.1	2.7	3	0	0	3	3	3	0	SMC	proteins	Flexible	Hinge	Domain
Lyase_1	PF00206.20	gi|336252781|ref|YP_004595888.1|	-	7.2e-59	199.7	0.1	1.6e-58	198.5	0.0	1.6	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.6	gi|336252781|ref|YP_004595888.1|	-	1.3e-16	61.0	0.6	1.3e-16	61.0	0.6	2.9	4	0	0	4	4	4	1	Argininosuccinate	lyase	C-terminal
Phage_fiber_2	PF03406.13	gi|336252781|ref|YP_004595888.1|	-	0.055	13.0	0.0	0.25	10.9	0.0	2.2	1	0	0	1	1	1	0	Phage	tail	fibre	repeat
DNA_RNApol_7kD	PF03604.13	gi|336252782|ref|YP_004595889.1|	-	0.0014	18.2	1.8	0.0042	16.7	1.8	1.7	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.6	gi|336252782|ref|YP_004595889.1|	-	0.0037	16.9	0.5	2.3	8.1	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|336252782|ref|YP_004595889.1|	-	0.0087	16.4	0.3	0.013	15.9	0.3	1.3	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
ADD_ATRX	PF17981.1	gi|336252782|ref|YP_004595889.1|	-	0.014	15.2	1.0	0.052	13.4	0.0	2.0	1	1	1	2	2	2	0	Cysteine	Rich	ADD	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336252782|ref|YP_004595889.1|	-	0.015	15.3	1.3	0.061	13.3	1.4	1.8	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.6	gi|336252782|ref|YP_004595889.1|	-	0.019	14.3	0.2	0.91	9.0	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|336252782|ref|YP_004595889.1|	-	0.026	14.5	0.8	0.28	11.3	0.8	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|336252782|ref|YP_004595889.1|	-	0.035	14.1	0.3	0.036	14.1	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-HYPF	PF07503.12	gi|336252782|ref|YP_004595889.1|	-	0.04	13.7	0.0	6.8	6.6	0.0	2.1	2	0	0	2	2	2	0	HypF	finger
TF_Zn_Ribbon	PF08271.12	gi|336252782|ref|YP_004595889.1|	-	0.042	13.4	3.6	0.057	12.9	3.6	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|336252782|ref|YP_004595889.1|	-	0.064	13.4	2.4	0.22	11.7	2.3	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|336252782|ref|YP_004595889.1|	-	0.07	13.0	1.5	0.38	10.7	1.5	1.9	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
zf_UBZ	PF18439.1	gi|336252782|ref|YP_004595889.1|	-	0.073	12.7	0.9	4.6	6.9	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
YhfH	PF14149.6	gi|336252782|ref|YP_004595889.1|	-	0.086	12.8	2.2	7.3	6.7	0.1	2.2	2	0	0	2	2	2	0	YhfH-like	protein
Desulfoferrod_N	PF06397.12	gi|336252782|ref|YP_004595889.1|	-	0.1	12.2	2.3	0.89	9.2	0.2	2.1	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
DUF1451	PF07295.11	gi|336252782|ref|YP_004595889.1|	-	0.12	12.4	0.9	0.15	12.1	0.9	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-C3HC	PF07967.13	gi|336252782|ref|YP_004595889.1|	-	0.27	11.3	1.2	2	8.5	0.1	2.0	1	1	1	2	2	2	0	C3HC	zinc	finger-like
Prok-RING_1	PF14446.6	gi|336252782|ref|YP_004595889.1|	-	0.65	10.0	4.9	1.2	9.2	4.9	1.4	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Eapp_C	PF10238.9	gi|336252782|ref|YP_004595889.1|	-	1.3	9.1	4.1	6.6	6.8	0.4	2.0	1	1	1	2	2	2	0	E2F-associated	phosphoprotein
RimK	PF08443.11	gi|336252783|ref|YP_004595890.1|	-	1.5e-27	96.4	0.0	1.9e-27	96.1	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|336252783|ref|YP_004595890.1|	-	1e-11	45.2	0.0	1.4e-11	44.7	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|336252783|ref|YP_004595890.1|	-	3.3e-08	33.1	0.0	4.9e-08	32.6	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|336252783|ref|YP_004595890.1|	-	2.1e-07	30.7	0.3	4.5e-06	26.3	0.1	2.7	2	1	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|336252783|ref|YP_004595890.1|	-	4.2e-06	26.4	0.1	0.00012	21.6	0.0	2.6	1	1	1	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|336252783|ref|YP_004595890.1|	-	6.9e-06	25.7	0.0	1.3e-05	24.8	0.0	1.7	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.6	gi|336252783|ref|YP_004595890.1|	-	2e-05	24.0	0.0	0.0053	16.1	0.0	2.5	3	1	0	3	3	3	2	Sugar-transfer	associated	ATP-grasp
Rimk_N	PF18030.1	gi|336252783|ref|YP_004595890.1|	-	0.044	14.2	0.0	0.16	12.4	0.0	2.0	1	1	0	1	1	1	0	RimK	PreATP-grasp	domain
DUF287	PF03384.14	gi|336252783|ref|YP_004595890.1|	-	0.46	10.9	2.3	0.86	10.0	0.3	2.5	3	0	0	3	3	3	0	Drosophila	protein	of	unknown	function,	DUF287
Semialdhyde_dh	PF01118.24	gi|336252784|ref|YP_004595891.1|	-	1.6e-26	93.1	0.0	3.6e-26	92.0	0.0	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|336252784|ref|YP_004595891.1|	-	5.3e-08	33.2	0.0	8.8e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
AA_kinase	PF00696.28	gi|336252785|ref|YP_004595892.1|	-	1.3e-32	113.4	4.8	1.5e-32	113.1	4.8	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Aminotran_3	PF00202.21	gi|336252786|ref|YP_004595893.1|	-	1.9e-101	339.7	0.0	2.6e-101	339.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|336252786|ref|YP_004595893.1|	-	0.0026	17.0	0.0	0.0036	16.5	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|336252786|ref|YP_004595893.1|	-	0.025	13.8	0.0	0.041	13.1	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
Cupin_6	PF12852.7	gi|336252786|ref|YP_004595893.1|	-	0.028	14.1	0.5	0.4	10.4	0.0	2.2	2	0	0	2	2	2	0	Cupin
Asparaginase_C	PF17763.1	gi|336252786|ref|YP_004595893.1|	-	0.11	12.7	0.0	0.62	10.3	0.0	2.0	2	0	0	2	2	2	0	Glutaminase/Asparaginase	C-terminal	domain
PP2C_2	PF13672.6	gi|336252786|ref|YP_004595893.1|	-	0.45	10.1	3.3	0.91	9.1	0.3	2.6	3	0	0	3	3	3	0	Protein	phosphatase	2C
Peptidase_M20	PF01546.28	gi|336252787|ref|YP_004595894.1|	-	1.6e-24	86.7	0.8	2.3e-24	86.3	0.8	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336252787|ref|YP_004595894.1|	-	6.5e-06	26.0	0.0	1.3e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|336252787|ref|YP_004595894.1|	-	0.026	14.2	0.3	0.32	10.7	0.2	2.2	1	1	0	1	1	1	0	Peptidase	family	M28
OTCace_N	PF02729.21	gi|336252788|ref|YP_004595895.1|	-	6.4e-53	178.8	0.0	9.7e-53	178.2	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|336252788|ref|YP_004595895.1|	-	4.5e-52	176.3	0.0	6.7e-52	175.7	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PALP	PF00291.25	gi|336252789|ref|YP_004595896.1|	-	9.1e-71	238.7	4.7	1.1e-70	238.4	4.7	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
C1_2	PF03107.16	gi|336252789|ref|YP_004595896.1|	-	0.12	12.7	0.1	0.19	12.1	0.1	1.3	1	0	0	1	1	1	0	C1	domain
CENP-F_leu_zip	PF10473.9	gi|336252790|ref|YP_004595897.1|	-	0.0052	16.8	0.9	0.0079	16.2	0.9	1.2	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
GATase	PF00117.28	gi|336252791|ref|YP_004595898.1|	-	4.2e-22	78.8	0.0	5.8e-22	78.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|336252791|ref|YP_004595898.1|	-	5e-07	29.7	0.2	1e-05	25.4	0.2	2.3	1	1	0	1	1	1	1	Peptidase	C26
HTS	PF04204.16	gi|336252791|ref|YP_004595898.1|	-	0.0012	17.8	0.0	0.011	14.7	0.0	2.3	1	1	0	1	1	1	1	Homoserine	O-succinyltransferase
DJ-1_PfpI	PF01965.24	gi|336252791|ref|YP_004595898.1|	-	0.029	14.2	0.0	0.11	12.3	0.0	1.8	2	0	0	2	2	2	0	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|336252791|ref|YP_004595898.1|	-	0.14	11.7	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
AMP-binding	PF00501.28	gi|336252792|ref|YP_004595899.1|	-	9.6e-40	136.4	0.0	1.7e-39	135.6	0.0	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
FeoA	PF04023.14	gi|336252792|ref|YP_004595899.1|	-	0.054	13.8	0.0	0.34	11.2	0.0	2.2	2	0	0	2	2	2	0	FeoA	domain
Abhydrolase_1	PF00561.20	gi|336252793|ref|YP_004595900.1|	-	4.5e-17	62.5	0.0	7.5e-10	38.9	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|336252793|ref|YP_004595900.1|	-	9.9e-15	55.7	12.6	1.2e-14	55.5	12.6	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|336252793|ref|YP_004595900.1|	-	9.4e-08	31.6	0.0	0.0016	17.8	0.0	2.0	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|336252793|ref|YP_004595900.1|	-	0.00031	20.8	0.0	0.00056	20.0	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
tRNA-synt_2c	PF01411.19	gi|336252794|ref|YP_004595901.1|	-	5.6e-117	391.6	0.0	7e-117	391.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|336252794|ref|YP_004595901.1|	-	4.1e-17	62.9	4.1	1.1e-16	61.6	4.1	1.8	1	0	0	1	1	1	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|336252794|ref|YP_004595901.1|	-	2e-12	47.0	1.1	2e-12	47.0	1.1	1.8	2	0	0	2	2	2	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
GAF_2	PF13185.6	gi|336252795|ref|YP_004595902.1|	-	9e-12	45.5	0.4	9e-12	45.5	0.4	4.5	5	1	0	5	5	5	1	GAF	domain
GAF	PF01590.26	gi|336252795|ref|YP_004595902.1|	-	1.1e-05	26.1	0.1	3.7e-05	24.4	0.1	2.0	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|336252795|ref|YP_004595902.1|	-	0.00067	19.9	0.9	0.00067	19.9	0.9	3.3	3	1	0	3	3	3	1	PAS	fold
TMF_TATA_bd	PF12325.8	gi|336252795|ref|YP_004595902.1|	-	0.01	16.0	3.0	0.062	13.5	0.3	2.5	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
GAF_3	PF13492.6	gi|336252795|ref|YP_004595902.1|	-	0.085	13.2	0.4	4.3	7.7	0.0	2.9	2	0	0	2	2	2	0	GAF	domain
Rep_fac_C	PF08542.11	gi|336252796|ref|YP_004595903.1|	-	3.9e-23	81.7	0.0	9.9e-23	80.4	0.0	1.7	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|336252796|ref|YP_004595903.1|	-	6.5e-20	71.9	0.1	1.2e-17	64.6	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|336252796|ref|YP_004595903.1|	-	1.9e-15	57.1	0.0	3.5e-11	43.1	0.0	2.2	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.15	gi|336252796|ref|YP_004595903.1|	-	6.4e-07	29.5	0.0	1.5e-06	28.2	0.0	1.6	2	0	0	2	2	2	1	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|336252796|ref|YP_004595903.1|	-	1.1e-06	29.2	0.4	0.0026	18.2	0.0	2.9	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_assoc_2	PF16193.5	gi|336252796|ref|YP_004595903.1|	-	1.2e-06	28.8	1.0	4.2e-06	27.0	0.4	2.2	2	1	0	2	2	1	1	AAA	C-terminal	domain
AAA_14	PF13173.6	gi|336252796|ref|YP_004595903.1|	-	2.1e-06	27.8	0.1	1.2e-05	25.3	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|336252796|ref|YP_004595903.1|	-	3.1e-06	27.0	0.3	4e-05	23.4	0.0	2.5	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DNA_pol3_delta	PF06144.13	gi|336252796|ref|YP_004595903.1|	-	3.6e-05	23.6	0.0	7.7e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_22	PF13401.6	gi|336252796|ref|YP_004595903.1|	-	3.8e-05	24.0	0.1	0.47	10.7	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|336252796|ref|YP_004595903.1|	-	0.00033	20.4	0.0	0.019	14.7	0.0	2.5	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|336252796|ref|YP_004595903.1|	-	0.0005	19.9	0.0	0.0031	17.4	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|336252796|ref|YP_004595903.1|	-	0.00052	20.6	0.0	0.002	18.7	0.0	2.0	2	1	1	3	3	1	1	AAA	domain
AAA_5	PF07728.14	gi|336252796|ref|YP_004595903.1|	-	0.00059	19.9	0.0	0.011	15.7	0.0	2.8	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|336252796|ref|YP_004595903.1|	-	0.00095	18.6	0.0	0.17	11.3	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|336252796|ref|YP_004595903.1|	-	0.0011	18.5	0.0	0.0019	17.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
ResIII	PF04851.15	gi|336252796|ref|YP_004595903.1|	-	0.0013	18.7	0.0	0.008	16.2	0.0	2.0	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.16	gi|336252796|ref|YP_004595903.1|	-	0.0047	16.4	0.0	0.2	11.1	0.0	2.3	2	0	0	2	2	2	1	PhoH-like	protein
Viral_helicase1	PF01443.18	gi|336252796|ref|YP_004595903.1|	-	0.0066	16.2	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|336252796|ref|YP_004595903.1|	-	0.0074	16.0	0.9	0.016	14.9	0.1	2.0	2	1	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|336252796|ref|YP_004595903.1|	-	0.009	15.8	0.0	0.022	14.5	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|336252796|ref|YP_004595903.1|	-	0.016	15.6	0.0	0.037	14.4	0.0	1.7	1	1	0	1	1	1	0	RNA	helicase
TIP49	PF06068.13	gi|336252796|ref|YP_004595903.1|	-	0.017	14.4	0.0	0.06	12.5	0.0	1.9	2	0	0	2	2	2	0	TIP49	P-loop	domain
DEAD	PF00270.29	gi|336252796|ref|YP_004595903.1|	-	0.02	14.7	0.8	9.8	5.9	0.0	3.0	2	1	0	3	3	3	0	DEAD/DEAH	box	helicase
AAA_25	PF13481.6	gi|336252796|ref|YP_004595903.1|	-	0.03	13.9	0.3	0.1	12.2	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
AAA_2	PF07724.14	gi|336252796|ref|YP_004595903.1|	-	0.032	14.4	0.0	0.1	12.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
NACHT	PF05729.12	gi|336252796|ref|YP_004595903.1|	-	0.034	14.0	0.0	0.13	12.2	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_33	PF13671.6	gi|336252796|ref|YP_004595903.1|	-	0.038	14.2	0.1	0.11	12.6	0.1	1.9	2	1	0	2	2	1	0	AAA	domain
Sigma54_activ_2	PF14532.6	gi|336252796|ref|YP_004595903.1|	-	0.041	14.0	0.0	0.12	12.5	0.0	1.7	1	1	0	1	1	1	0	Sigma-54	interaction	domain
T2SSE	PF00437.20	gi|336252796|ref|YP_004595903.1|	-	0.044	12.8	0.0	0.089	11.8	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_11	PF13086.6	gi|336252796|ref|YP_004595903.1|	-	0.098	12.4	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
TPR_14	PF13428.6	gi|336252796|ref|YP_004595903.1|	-	0.12	13.2	2.2	28	5.9	0.1	3.7	3	0	0	3	3	2	0	Tetratricopeptide	repeat
TetR_C_12	PF16914.5	gi|336252796|ref|YP_004595903.1|	-	0.13	12.4	0.3	0.33	11.1	0.1	1.8	2	0	0	2	2	1	0	Bacterial	transcriptional	repressor	C-terminal
TniB	PF05621.11	gi|336252796|ref|YP_004595903.1|	-	0.14	11.6	0.0	0.71	9.3	0.0	2.0	2	0	0	2	2	2	0	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|336252796|ref|YP_004595903.1|	-	0.14	11.3	0.0	0.23	10.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Torsin	PF06309.11	gi|336252796|ref|YP_004595903.1|	-	0.18	11.9	0.0	0.34	11.0	0.0	1.4	1	0	0	1	1	1	0	Torsin
TPR_6	PF13174.6	gi|336252796|ref|YP_004595903.1|	-	7.6	7.4	6.1	86	4.1	0.5	3.7	4	0	0	4	4	3	0	Tetratricopeptide	repeat
Bactofilin	PF04519.13	gi|336252797|ref|YP_004595904.1|	-	2.8e-09	37.2	21.3	2.6e-07	30.8	9.5	2.6	1	1	1	2	2	2	2	Polymer-forming	cytoskeletal
FapA	PF03961.13	gi|336252797|ref|YP_004595904.1|	-	0.013	14.1	11.0	0.019	13.6	11.0	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Phage_spike	PF18715.1	gi|336252797|ref|YP_004595904.1|	-	0.32	11.1	0.2	0.32	11.1	0.2	4.3	1	1	1	2	2	2	0	Phage	spike	trimer
Ribonuc_L-PSP	PF01042.21	gi|336252799|ref|YP_004595906.1|	-	1.6e-39	134.7	0.1	1.8e-39	134.5	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.6	gi|336252799|ref|YP_004595906.1|	-	0.0095	16.1	0.0	0.012	15.8	0.0	1.2	1	0	0	1	1	1	1	YjgF/chorismate_mutase-like,	putative	endoribonuclease
SHMT	PF00464.19	gi|336252800|ref|YP_004595907.1|	-	2.6e-155	516.9	0.0	3.1e-155	516.7	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|336252800|ref|YP_004595907.1|	-	5.9e-09	35.6	0.0	9.1e-09	34.9	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|336252800|ref|YP_004595907.1|	-	1.6e-05	24.4	0.0	0.0003	20.2	0.0	2.1	1	1	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|336252800|ref|YP_004595907.1|	-	0.15	11.3	0.3	0.21	10.9	0.3	1.2	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
BCCT	PF02028.17	gi|336252801|ref|YP_004595908.1|	-	2.5e-155	517.6	47.4	3.2e-155	517.3	47.4	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
PALP	PF00291.25	gi|336252802|ref|YP_004595909.1|	-	3.4e-86	289.3	8.2	5.1e-86	288.7	8.2	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|336252802|ref|YP_004595909.1|	-	0.00017	21.3	0.1	0.00017	21.3	0.1	3.2	3	0	0	3	3	3	1	ACT	domain
ACT_4	PF13291.6	gi|336252802|ref|YP_004595909.1|	-	0.0019	18.8	0.0	0.013	16.1	0.0	2.5	2	0	0	2	2	2	1	ACT	domain
GCV_T	PF01571.21	gi|336252803|ref|YP_004595910.1|	-	1.3e-75	254.1	0.0	2.2e-75	253.4	0.0	1.3	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|336252803|ref|YP_004595910.1|	-	1.1e-51	176.5	1.0	1.9e-51	175.7	1.0	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAO_M	PF16350.5	gi|336252803|ref|YP_004595910.1|	-	3.7e-16	59.2	0.4	9.3e-16	57.9	0.4	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
GCV_T_C	PF08669.11	gi|336252803|ref|YP_004595910.1|	-	1.8e-15	56.6	0.1	4.8e-15	55.2	0.1	1.8	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAD_binding_2	PF00890.24	gi|336252803|ref|YP_004595910.1|	-	1.3e-07	31.1	2.5	0.00043	19.5	0.3	2.6	3	0	0	3	3	3	2	FAD	binding	domain
SoxG	PF04268.12	gi|336252803|ref|YP_004595910.1|	-	9.5e-07	29.1	0.0	6.6e-06	26.3	0.0	2.1	1	1	1	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
NAD_binding_8	PF13450.6	gi|336252803|ref|YP_004595910.1|	-	1.5e-06	28.3	0.6	1.6e-05	25.0	0.2	3.0	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|336252803|ref|YP_004595910.1|	-	1.9e-05	24.1	3.5	0.012	14.8	0.2	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336252803|ref|YP_004595910.1|	-	3e-05	24.5	1.3	0.015	15.8	0.4	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252803|ref|YP_004595910.1|	-	0.00044	19.6	0.2	0.046	13.0	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ThiF	PF00899.21	gi|336252803|ref|YP_004595910.1|	-	0.0097	15.3	0.2	0.017	14.5	0.2	1.2	1	0	0	1	1	1	1	ThiF	family
NAD_binding_9	PF13454.6	gi|336252803|ref|YP_004595910.1|	-	0.039	13.9	3.2	3.5	7.6	0.1	2.7	3	0	0	3	3	2	0	FAD-NAD(P)-binding
ApbA	PF02558.16	gi|336252803|ref|YP_004595910.1|	-	0.057	13.1	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Thi4	PF01946.17	gi|336252803|ref|YP_004595910.1|	-	0.08	12.2	0.2	0.91	8.7	0.1	2.1	2	0	0	2	2	2	0	Thi4	family
HI0933_like	PF03486.14	gi|336252803|ref|YP_004595910.1|	-	0.081	11.6	0.2	3.7	6.2	0.0	2.1	2	0	0	2	2	2	0	HI0933-like	protein
GIDA	PF01134.22	gi|336252803|ref|YP_004595910.1|	-	0.098	11.7	1.4	0.39	9.7	0.3	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|336252803|ref|YP_004595910.1|	-	0.17	11.1	0.1	0.35	10.1	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_oxidored	PF12831.7	gi|336252803|ref|YP_004595910.1|	-	0.34	10.2	3.5	0.23	10.8	0.7	2.0	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336252803|ref|YP_004595910.1|	-	0.36	10.0	2.8	1.7	7.8	0.2	2.2	2	0	0	2	2	2	0	FAD	binding	domain
EamA	PF00892.20	gi|336252804|ref|YP_004595911.1|	-	1.8e-15	57.3	16.7	1.9e-15	57.2	16.7	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
DAO	PF01266.24	gi|336252805|ref|YP_004595912.1|	-	1e-50	173.3	0.2	1.2e-50	173.1	0.2	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336252805|ref|YP_004595912.1|	-	0.00047	19.5	0.0	0.0042	16.4	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336252805|ref|YP_004595912.1|	-	0.0012	17.7	0.0	0.022	13.5	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|336252805|ref|YP_004595912.1|	-	0.0022	17.3	0.0	0.024	13.9	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
SUKH-4	PF14435.6	gi|336252805|ref|YP_004595912.1|	-	0.0031	17.6	0.0	0.0068	16.5	0.0	1.6	1	0	0	1	1	1	1	SUKH-4	immunity	protein
FAD_binding_3	PF01494.19	gi|336252805|ref|YP_004595912.1|	-	0.013	14.7	0.3	0.022	14.0	0.3	1.3	1	0	0	1	1	1	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|336252805|ref|YP_004595912.1|	-	0.041	13.8	0.2	0.072	13.0	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|336252805|ref|YP_004595912.1|	-	0.045	13.4	0.3	0.075	12.7	0.3	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_9	PF13454.6	gi|336252805|ref|YP_004595912.1|	-	0.085	12.9	0.2	0.085	12.9	0.2	2.6	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|336252805|ref|YP_004595912.1|	-	0.13	11.5	0.0	0.21	10.9	0.0	1.4	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
DUF1990	PF09348.10	gi|336252805|ref|YP_004595912.1|	-	0.14	12.2	0.1	0.5	10.4	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1990)
FAD_binding_2	PF00890.24	gi|336252805|ref|YP_004595912.1|	-	0.14	11.2	0.7	0.62	9.1	0.1	1.9	2	0	0	2	2	2	0	FAD	binding	domain
Thi4	PF01946.17	gi|336252805|ref|YP_004595912.1|	-	0.15	11.3	0.4	0.29	10.3	0.0	1.6	2	0	0	2	2	2	0	Thi4	family
Ring_hydroxyl_A	PF00848.19	gi|336252806|ref|YP_004595913.1|	-	1.7e-18	67.4	7.1	1.5e-16	61.0	7.1	2.2	1	1	0	1	1	1	1	Ring	hydroxylating	alpha	subunit	(catalytic	domain)
Rieske	PF00355.26	gi|336252806|ref|YP_004595913.1|	-	4.4e-16	58.6	0.0	9.5e-16	57.5	0.0	1.5	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|336252806|ref|YP_004595913.1|	-	0.12	12.3	0.0	0.34	10.9	0.0	1.7	2	0	0	2	2	2	0	Rieske-like	[2Fe-2S]	domain
HTH_10	PF04967.12	gi|336252808|ref|YP_004595915.1|	-	1.3e-15	57.0	0.0	2.1e-15	56.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252808|ref|YP_004595915.1|	-	3e-10	40.2	0.7	4.2e-10	39.7	0.3	1.4	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_AsnC-type	PF13404.6	gi|336252808|ref|YP_004595915.1|	-	0.0014	18.4	0.1	0.0033	17.2	0.1	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336252808|ref|YP_004595915.1|	-	0.008	15.8	0.0	0.096	12.4	0.0	2.4	1	1	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|336252808|ref|YP_004595915.1|	-	0.0091	15.5	0.1	0.024	14.2	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336252808|ref|YP_004595915.1|	-	0.013	15.1	0.0	0.024	14.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.22	gi|336252808|ref|YP_004595915.1|	-	0.16	12.1	0.0	0.32	11.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
Homeodomain	PF00046.29	gi|336252808|ref|YP_004595915.1|	-	0.19	11.6	0.0	0.49	10.3	0.0	1.6	1	0	0	1	1	1	0	Homeodomain
AhpC-TSA	PF00578.21	gi|336252809|ref|YP_004595916.1|	-	1.1e-16	60.8	0.0	1.5e-16	60.4	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336252809|ref|YP_004595916.1|	-	8.4e-09	35.3	0.0	1.1e-08	35.0	0.0	1.2	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|336252809|ref|YP_004595916.1|	-	2e-05	24.7	0.0	2.8e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Acetyltransf_7	PF13508.7	gi|336252810|ref|YP_004595917.1|	-	2.5e-09	37.4	1.2	8.4e-09	35.7	1.2	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336252810|ref|YP_004595917.1|	-	3.5e-08	33.7	2.5	1.9e-07	31.3	2.5	1.8	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336252810|ref|YP_004595917.1|	-	1.4e-06	28.3	0.0	1.7e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336252810|ref|YP_004595917.1|	-	0.0019	18.1	2.1	0.011	15.7	1.3	2.3	1	1	1	2	2	2	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|336252810|ref|YP_004595917.1|	-	0.0046	17.0	0.7	0.022	14.8	0.7	2.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336252810|ref|YP_004595917.1|	-	0.096	12.8	0.2	0.2	11.8	0.1	1.6	1	1	0	1	1	1	0	GCN5-related	N-acetyl-transferase
PanZ	PF12568.8	gi|336252810|ref|YP_004595917.1|	-	0.48	10.2	5.9	1.1	9.0	5.8	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
CPP1-like	PF11833.8	gi|336252811|ref|YP_004595918.1|	-	0.11	12.1	3.2	0.14	11.8	3.2	1.2	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
CTP_transf_like	PF01467.26	gi|336252812|ref|YP_004595919.1|	-	1.1e-15	58.1	0.0	1.3e-15	57.8	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|336252812|ref|YP_004595919.1|	-	0.025	14.5	0.0	0.057	13.3	0.0	1.6	2	0	0	2	2	2	0	FAD	synthetase
SHOCT	PF09851.9	gi|336252813|ref|YP_004595920.1|	-	7.6e-05	22.3	4.1	0.00013	21.5	2.4	2.1	1	1	1	2	2	2	2	Short	C-terminal	domain
DUF1707	PF08044.11	gi|336252813|ref|YP_004595920.1|	-	0.027	14.5	0.4	0.05	13.7	0.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.12	gi|336252813|ref|YP_004595920.1|	-	0.16	12.0	0.3	0.26	11.3	0.3	1.3	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Helicase_C_2	PF13307.6	gi|336252814|ref|YP_004595921.1|	-	2.7e-33	115.5	0.0	5.7e-33	114.5	0.0	1.4	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|336252814|ref|YP_004595921.1|	-	1.9e-06	27.6	0.0	7.1e-06	25.8	0.0	2.0	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|336252814|ref|YP_004595921.1|	-	6.6e-05	22.7	0.0	0.13	12.0	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|336252814|ref|YP_004595921.1|	-	0.0011	19.1	0.0	0.023	14.7	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.16	gi|336252814|ref|YP_004595921.1|	-	0.0013	18.2	0.0	0.0026	17.2	0.0	1.4	1	0	0	1	1	1	1	PhoH-like	protein
DUF2075	PF09848.9	gi|336252814|ref|YP_004595921.1|	-	0.0045	16.3	0.0	0.036	13.3	0.0	2.0	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
HBB	PF06777.11	gi|336252814|ref|YP_004595921.1|	-	0.054	13.2	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
AAA_19	PF13245.6	gi|336252814|ref|YP_004595921.1|	-	0.062	13.6	0.0	0.25	11.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|336252814|ref|YP_004595921.1|	-	0.082	12.6	0.0	1.2	8.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
UvrD-helicase	PF00580.21	gi|336252814|ref|YP_004595921.1|	-	0.19	11.2	0.0	0.29	10.6	0.0	1.2	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
CPBP	PF02517.16	gi|336252815|ref|YP_004595922.1|	-	1.3e-11	44.7	7.9	1.3e-11	44.7	7.9	2.3	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
DUF1684	PF07920.11	gi|336252817|ref|YP_004595924.1|	-	1.5e-49	167.9	0.1	2e-49	167.5	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
Methyltransf_11	PF08241.12	gi|336252818|ref|YP_004595925.1|	-	6.4e-24	84.4	0.0	1.1e-23	83.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252818|ref|YP_004595925.1|	-	6.6e-20	71.6	0.0	1.3e-19	70.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336252818|ref|YP_004595925.1|	-	1.7e-15	57.2	0.0	2.1e-15	56.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336252818|ref|YP_004595925.1|	-	1e-13	51.4	0.0	1.3e-13	51.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336252818|ref|YP_004595925.1|	-	4.9e-11	42.4	0.0	1e-10	41.3	0.0	1.4	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336252818|ref|YP_004595925.1|	-	5.8e-11	43.0	0.0	9.6e-11	42.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|336252818|ref|YP_004595925.1|	-	0.00013	22.0	0.0	0.00022	21.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|336252818|ref|YP_004595925.1|	-	0.00015	21.1	0.0	0.00022	20.6	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|336252818|ref|YP_004595925.1|	-	0.00033	20.3	0.0	0.00054	19.6	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_9	PF08003.11	gi|336252818|ref|YP_004595925.1|	-	0.00043	19.3	0.0	0.00095	18.2	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MTS	PF05175.14	gi|336252818|ref|YP_004595925.1|	-	0.0012	18.4	0.0	0.0033	17.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_2	PF00891.18	gi|336252818|ref|YP_004595925.1|	-	0.0022	17.3	0.0	0.0031	16.9	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_8	PF05148.15	gi|336252818|ref|YP_004595925.1|	-	0.0031	17.4	0.0	0.0099	15.7	0.0	1.7	1	1	0	1	1	1	1	Hypothetical	methyltransferase
PCMT	PF01135.19	gi|336252818|ref|YP_004595925.1|	-	0.0034	17.1	0.0	0.0059	16.4	0.0	1.6	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
N6_N4_Mtase	PF01555.18	gi|336252818|ref|YP_004595925.1|	-	0.0047	16.7	0.0	0.8	9.4	0.0	2.3	2	1	0	2	2	2	1	DNA	methylase
Fibrillarin	PF01269.17	gi|336252818|ref|YP_004595925.1|	-	0.02	14.0	0.0	0.034	13.2	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
FtsJ	PF01728.19	gi|336252818|ref|YP_004595925.1|	-	0.035	14.2	0.0	0.44	10.6	0.0	2.0	1	1	0	2	2	2	0	FtsJ-like	methyltransferase
PrmA	PF06325.13	gi|336252818|ref|YP_004595925.1|	-	0.16	11.3	0.0	0.31	10.4	0.0	1.5	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
ATPase	PF06745.13	gi|336252819|ref|YP_004595926.1|	-	0.00028	20.3	0.0	0.00037	19.9	0.0	1.1	1	0	0	1	1	1	1	KaiC
SIP	PF04954.13	gi|336252819|ref|YP_004595926.1|	-	0.032	14.8	0.1	0.072	13.6	0.0	1.6	2	0	0	2	2	2	0	Siderophore-interacting	protein
Dabb	PF07876.12	gi|336252819|ref|YP_004595926.1|	-	0.051	14.2	0.0	0.14	12.8	0.0	1.8	1	1	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
EF-hand_5	PF13202.6	gi|336252819|ref|YP_004595926.1|	-	3.3	7.3	5.8	3.4	7.3	1.7	2.9	2	0	0	2	2	2	0	EF	hand
DUF3515	PF12028.8	gi|336252820|ref|YP_004595927.1|	-	2.2	8.0	5.4	3.3	7.4	0.3	2.9	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF3515)
DUF2072	PF09845.9	gi|336252821|ref|YP_004595928.1|	-	4.1e-32	111.2	4.2	5.6e-16	59.0	0.0	2.7	3	1	0	3	3	3	2	Zn-ribbon	containing	protein
DUF1451	PF07295.11	gi|336252821|ref|YP_004595928.1|	-	0.19	11.8	1.3	0.37	10.8	1.3	1.4	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
HypA	PF01155.19	gi|336252821|ref|YP_004595928.1|	-	0.2	11.7	0.3	0.32	11.0	0.3	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|336252821|ref|YP_004595928.1|	-	0.22	11.7	3.1	0.46	10.6	3.1	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2HC_2	PF13913.6	gi|336252821|ref|YP_004595928.1|	-	0.38	10.7	1.0	0.66	10.0	1.0	1.4	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
Anti-TRAP	PF15777.5	gi|336252821|ref|YP_004595928.1|	-	0.72	9.9	3.1	2	8.4	3.1	1.7	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zinc_ribbon_2	PF13240.6	gi|336252821|ref|YP_004595928.1|	-	1.2	9.0	5.0	2.3	8.1	5.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-C2H2	PF00096.26	gi|336252821|ref|YP_004595928.1|	-	7.7	7.2	5.1	2.8	8.6	0.6	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF2073	PF09846.9	gi|336252822|ref|YP_004595929.1|	-	2.5e-45	152.7	0.5	2.9e-45	152.4	0.5	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.23	gi|336252823|ref|YP_004595930.1|	-	2.7e-15	56.5	0.0	3.6e-15	56.0	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|336252823|ref|YP_004595930.1|	-	1.4e-11	44.3	0.4	0.0001	21.9	0.0	3.2	2	2	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|336252823|ref|YP_004595930.1|	-	5.9e-08	32.4	0.1	0.00015	21.3	0.1	2.5	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
FeoB_N	PF02421.18	gi|336252823|ref|YP_004595930.1|	-	9.4e-06	25.2	0.1	6.3e-05	22.5	0.1	2.2	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|336252823|ref|YP_004595930.1|	-	1.7e-05	24.8	0.0	0.16	11.9	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
Septin	PF00735.18	gi|336252823|ref|YP_004595930.1|	-	0.00011	21.6	0.0	0.00019	20.8	0.0	1.3	1	1	0	1	1	1	1	Septin
MMR_HSR1_Xtn	PF16897.5	gi|336252823|ref|YP_004595930.1|	-	0.00017	21.6	0.0	0.0003	20.8	0.0	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
NB-ARC	PF00931.22	gi|336252823|ref|YP_004595930.1|	-	0.00023	20.4	0.0	0.00038	19.7	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
SRPRB	PF09439.10	gi|336252823|ref|YP_004595930.1|	-	0.00035	20.1	0.0	0.072	12.5	0.0	2.2	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AAA	PF00004.29	gi|336252823|ref|YP_004595930.1|	-	0.00087	19.7	0.1	0.021	15.2	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Ras	PF00071.22	gi|336252823|ref|YP_004595930.1|	-	0.001	18.7	0.0	0.43	10.2	0.0	2.5	2	1	0	2	2	2	1	Ras	family
AAA_18	PF13238.6	gi|336252823|ref|YP_004595930.1|	-	0.0011	19.6	0.0	0.004	17.7	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
Roc	PF08477.13	gi|336252823|ref|YP_004595930.1|	-	0.0013	18.9	0.0	0.012	15.8	0.0	2.1	2	0	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_24	PF13479.6	gi|336252823|ref|YP_004595930.1|	-	0.0015	18.3	0.0	0.0028	17.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336252823|ref|YP_004595930.1|	-	0.0048	17.3	0.0	0.0088	16.4	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.6	gi|336252823|ref|YP_004595930.1|	-	0.0049	17.1	0.4	0.02	15.2	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|336252823|ref|YP_004595930.1|	-	0.0053	16.7	0.0	0.011	15.6	0.0	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Dynamin_N	PF00350.23	gi|336252823|ref|YP_004595930.1|	-	0.01	15.9	0.0	0.89	9.6	0.0	2.3	1	1	0	2	2	2	0	Dynamin	family
RNA_helicase	PF00910.22	gi|336252823|ref|YP_004595930.1|	-	0.011	16.1	0.0	0.017	15.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
ABC_tran	PF00005.27	gi|336252823|ref|YP_004595930.1|	-	0.012	16.2	0.0	0.017	15.6	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|336252823|ref|YP_004595930.1|	-	0.024	14.2	0.5	6.6	6.3	0.1	2.4	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_25	PF13481.6	gi|336252823|ref|YP_004595930.1|	-	0.036	13.7	0.2	0.089	12.4	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
RuvB_N	PF05496.12	gi|336252823|ref|YP_004595930.1|	-	0.038	13.7	0.0	0.074	12.8	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NACHT	PF05729.12	gi|336252823|ref|YP_004595930.1|	-	0.064	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
TniB	PF05621.11	gi|336252823|ref|YP_004595930.1|	-	0.12	11.7	0.0	0.2	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	TniB	protein
Parvo_NS1	PF01057.17	gi|336252823|ref|YP_004595930.1|	-	0.13	11.4	0.0	0.21	10.6	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_22	PF13401.6	gi|336252823|ref|YP_004595930.1|	-	0.14	12.5	0.0	0.28	11.4	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Gtr1_RagA	PF04670.12	gi|336252823|ref|YP_004595930.1|	-	0.16	11.3	0.0	1.2	8.4	0.0	2.1	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
Cdc6_C	PF09079.11	gi|336252824|ref|YP_004595931.1|	-	6.3e-24	83.8	0.1	1.5e-23	82.5	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|336252824|ref|YP_004595931.1|	-	1.7e-09	38.3	0.3	1.4e-08	35.3	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336252824|ref|YP_004595931.1|	-	2.4e-09	37.7	0.1	0.0021	18.5	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|336252824|ref|YP_004595931.1|	-	9.2e-09	35.7	0.1	3.2e-06	27.5	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|336252824|ref|YP_004595931.1|	-	0.00054	19.7	0.0	0.0017	18.1	0.0	1.9	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TniB	PF05621.11	gi|336252824|ref|YP_004595931.1|	-	0.00065	19.2	0.2	0.0054	16.2	0.0	2.3	2	0	0	2	2	2	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|336252824|ref|YP_004595931.1|	-	0.0026	16.9	0.0	0.0064	15.7	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|336252824|ref|YP_004595931.1|	-	0.0027	17.4	0.0	0.0065	16.2	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|336252824|ref|YP_004595931.1|	-	0.0065	16.4	0.2	0.15	11.9	0.0	2.4	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
T2SSE	PF00437.20	gi|336252824|ref|YP_004595931.1|	-	0.0069	15.5	0.0	0.012	14.7	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_2	PF07724.14	gi|336252824|ref|YP_004595931.1|	-	0.0072	16.5	0.1	5.1	7.2	0.1	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_18	PF13238.6	gi|336252824|ref|YP_004595931.1|	-	0.0082	16.7	0.1	0.027	15.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|336252824|ref|YP_004595931.1|	-	0.012	15.5	0.0	0.11	12.4	0.0	2.2	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_32	PF13654.6	gi|336252824|ref|YP_004595931.1|	-	0.016	14.0	0.4	1.3	7.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|336252824|ref|YP_004595931.1|	-	0.027	15.0	0.0	0.093	13.2	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
TIP49	PF06068.13	gi|336252824|ref|YP_004595931.1|	-	0.036	13.3	0.0	0.075	12.2	0.0	1.5	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_assoc_2	PF16193.5	gi|336252824|ref|YP_004595931.1|	-	0.039	14.3	1.0	0.099	13.0	0.3	2.0	2	0	0	2	2	1	0	AAA	C-terminal	domain
AAA_7	PF12775.7	gi|336252824|ref|YP_004595931.1|	-	0.04	13.4	0.0	0.066	12.7	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DNA_pol3_delta2	PF13177.6	gi|336252824|ref|YP_004595931.1|	-	0.058	13.2	0.0	0.17	11.7	0.0	1.8	2	1	0	2	2	2	0	DNA	polymerase	III,	delta	subunit
AAA_24	PF13479.6	gi|336252824|ref|YP_004595931.1|	-	0.087	12.5	0.1	0.31	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MutS_III	PF05192.18	gi|336252824|ref|YP_004595931.1|	-	0.093	12.9	2.9	0.13	12.5	0.5	2.2	2	2	0	2	2	2	0	MutS	domain	III
DEAD	PF00270.29	gi|336252824|ref|YP_004595931.1|	-	0.094	12.5	0.7	8.3	6.1	0.0	2.7	3	0	0	3	3	3	0	DEAD/DEAH	box	helicase
KAP_NTPase	PF07693.14	gi|336252824|ref|YP_004595931.1|	-	0.1	11.8	0.1	0.33	10.1	0.0	1.7	1	1	0	2	2	2	0	KAP	family	P-loop	domain
NB-ARC	PF00931.22	gi|336252824|ref|YP_004595931.1|	-	0.11	11.7	0.0	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|336252824|ref|YP_004595931.1|	-	0.11	12.9	0.0	0.24	11.8	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_lid_10	PF17872.1	gi|336252824|ref|YP_004595931.1|	-	0.15	12.2	0.0	1.2	9.3	0.0	2.2	2	0	0	2	2	2	0	AAA	lid	domain
ABC_tran_CTD	PF16326.5	gi|336252824|ref|YP_004595931.1|	-	0.52	10.6	2.6	14	6.0	0.2	2.6	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
TAT_signal	PF10518.9	gi|336252825|ref|YP_004595932.1|	-	0.012	15.4	1.6	0.017	15.0	1.6	1.2	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4115	PF13464.6	gi|336252825|ref|YP_004595932.1|	-	0.17	12.1	0.0	6.4	7.0	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4115)
Peptidase_S24	PF00717.23	gi|336252826|ref|YP_004595933.1|	-	1.2e-05	25.1	0.4	3.3e-05	23.8	0.4	1.8	1	1	0	1	1	1	1	Peptidase	S24-like
DNA_pol_E_B	PF04042.16	gi|336252827|ref|YP_004595934.1|	-	2.5e-12	46.6	0.0	3.8e-12	46.0	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.7	gi|336252827|ref|YP_004595934.1|	-	1e-10	42.0	3.0	2.7e-10	40.7	3.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336252827|ref|YP_004595934.1|	-	5.1e-10	40.2	0.6	9.3e-10	39.3	0.6	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
DUF1249	PF06853.12	gi|336252827|ref|YP_004595934.1|	-	0.19	11.8	0.0	0.37	10.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1249)
HTH_20	PF12840.7	gi|336252828|ref|YP_004595935.1|	-	4.1e-09	36.3	0.2	6.7e-09	35.7	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336252828|ref|YP_004595935.1|	-	3.1e-07	30.2	0.0	4.2e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336252828|ref|YP_004595935.1|	-	4.2e-07	29.7	0.1	7.1e-07	29.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|336252828|ref|YP_004595935.1|	-	5.8e-06	26.2	0.0	6.9e-05	22.7	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_11	PF08279.12	gi|336252828|ref|YP_004595935.1|	-	2.8e-05	24.0	0.0	4.6e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.6	gi|336252828|ref|YP_004595935.1|	-	9.6e-05	22.3	0.1	0.00015	21.7	0.1	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336252828|ref|YP_004595935.1|	-	0.00014	21.7	0.0	0.00021	21.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|336252828|ref|YP_004595935.1|	-	0.0018	17.8	0.2	0.0071	15.9	0.2	1.9	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|336252828|ref|YP_004595935.1|	-	0.022	15.1	0.0	0.038	14.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HxlR	PF01638.17	gi|336252828|ref|YP_004595935.1|	-	0.03	14.2	0.0	0.038	13.8	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Replic_Relax	PF13814.6	gi|336252828|ref|YP_004595935.1|	-	0.048	13.7	0.0	0.06	13.4	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
HTH_36	PF13730.6	gi|336252828|ref|YP_004595935.1|	-	0.05	13.6	0.0	0.079	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|336252828|ref|YP_004595935.1|	-	0.056	13.4	0.0	0.087	12.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.10	gi|336252828|ref|YP_004595935.1|	-	0.062	13.1	0.0	0.099	12.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|336252828|ref|YP_004595935.1|	-	0.065	12.9	0.1	0.12	12.0	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
FUR	PF01475.19	gi|336252828|ref|YP_004595935.1|	-	0.066	13.4	0.0	0.089	12.9	0.0	1.4	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
ArsR	PF09824.9	gi|336252828|ref|YP_004595935.1|	-	0.067	12.8	0.0	0.082	12.5	0.0	1.1	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
DUF1887	PF09002.11	gi|336252829|ref|YP_004595936.1|	-	0.022	13.5	0.0	0.031	13.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1887)
TetR_C_6	PF13977.6	gi|336252830|ref|YP_004595937.1|	-	1.5e-13	50.9	6.4	3.1e-13	50.0	6.4	1.5	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|336252830|ref|YP_004595937.1|	-	1.9e-08	33.9	0.0	3.5e-08	33.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|336252830|ref|YP_004595937.1|	-	1.7e-06	28.2	0.8	4.9e-06	26.8	0.2	2.2	1	1	2	3	3	3	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|336252830|ref|YP_004595937.1|	-	3.8e-05	23.7	0.6	0.00011	22.2	0.3	2.0	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|336252830|ref|YP_004595937.1|	-	0.013	15.6	0.7	0.028	14.4	0.7	1.6	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
RLL	PF10036.9	gi|336252830|ref|YP_004595937.1|	-	0.099	12.5	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	RNA	transcription,	translation	and	transport	factor	protein
AA_kinase	PF00696.28	gi|336252832|ref|YP_004595939.1|	-	1.1e-46	159.4	2.7	1.1e-46	159.4	2.7	1.7	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|336252832|ref|YP_004595939.1|	-	1.9e-13	50.0	0.0	8.7e-07	28.6	0.0	2.5	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.25	gi|336252832|ref|YP_004595939.1|	-	2.9e-07	30.1	2.5	0.064	13.0	0.0	3.5	3	0	0	3	3	3	2	ACT	domain
ACT_4	PF13291.6	gi|336252832|ref|YP_004595939.1|	-	0.00087	19.8	0.0	1.7	9.3	0.0	2.7	2	0	0	2	2	2	2	ACT	domain
Zn_Tnp_IS1595	PF12760.7	gi|336252833|ref|YP_004595940.1|	-	9.2e-05	22.3	2.5	9.9e-05	22.2	2.5	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|336252833|ref|YP_004595940.1|	-	0.006	16.5	1.9	0.033	14.1	1.9	1.9	1	1	0	1	1	1	1	zinc-ribbon	domain
zf-C2HC_2	PF13913.6	gi|336252833|ref|YP_004595940.1|	-	0.013	15.4	3.6	0.79	9.7	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Zn-ribbon_8	PF09723.10	gi|336252833|ref|YP_004595940.1|	-	0.05	13.7	3.7	2.4	8.4	0.3	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
Beta_elim_lyase	PF01212.21	gi|336252834|ref|YP_004595941.1|	-	3e-76	256.5	0.1	4.2e-76	256.0	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|336252834|ref|YP_004595941.1|	-	2.3e-05	23.9	0.4	0.00014	21.3	0.4	2.0	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SBP_bac_6	PF13343.6	gi|336252836|ref|YP_004595943.1|	-	3e-22	79.2	0.0	4e-22	78.8	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|336252836|ref|YP_004595943.1|	-	4e-10	40.0	0.0	5.5e-10	39.5	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|336252836|ref|YP_004595943.1|	-	1.2e-07	31.7	0.3	1.9e-07	31.1	0.3	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336252836|ref|YP_004595943.1|	-	0.014	15.4	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
AI-2E_transport	PF01594.16	gi|336252837|ref|YP_004595944.1|	-	7.1e-30	104.3	37.0	1.7e-29	103.0	37.0	1.5	1	1	0	1	1	1	1	AI-2E	family	transporter
DUF456	PF04306.13	gi|336252837|ref|YP_004595944.1|	-	0.0015	18.8	15.4	0.0015	18.8	15.4	3.4	3	1	0	3	3	3	2	Protein	of	unknown	function	(DUF456)
DUF5518	PF17647.1	gi|336252838|ref|YP_004595945.1|	-	3.2e-18	66.0	36.8	3.8e-18	65.7	36.8	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
PT-VENN	PF04829.13	gi|336252838|ref|YP_004595945.1|	-	0.43	10.7	3.5	0.49	10.5	0.9	2.2	2	0	0	2	2	2	0	Pre-toxin	domain	with	VENN	motif
Rick_17kDa_Anti	PF05433.15	gi|336252838|ref|YP_004595945.1|	-	4.1	7.3	20.4	32	4.5	0.6	3.8	3	1	0	3	3	3	0	Glycine	zipper	2TM	domain
FecCD	PF01032.18	gi|336252839|ref|YP_004595946.1|	-	1.1e-90	303.9	36.0	2.3e-90	302.8	36.0	1.5	1	1	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|336252839|ref|YP_004595946.1|	-	0.0022	17.5	19.9	0.008	15.7	19.9	1.9	1	1	0	1	1	1	1	ABC	3	transport	family
ABC_tran	PF00005.27	gi|336252840|ref|YP_004595947.1|	-	2.2e-31	109.2	0.0	2.9e-31	108.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252840|ref|YP_004595947.1|	-	1.4e-11	44.8	3.9	9.3e-06	25.7	0.4	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336252840|ref|YP_004595947.1|	-	1.1e-10	41.4	0.3	2.3e-08	33.7	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336252840|ref|YP_004595947.1|	-	1.5e-05	24.7	0.0	2.9e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|336252840|ref|YP_004595947.1|	-	0.00015	21.6	0.0	0.0009	19.1	0.0	1.8	1	1	1	2	2	2	1	AAA	ATPase	domain
ABC_ATPase	PF09818.9	gi|336252840|ref|YP_004595947.1|	-	0.00041	19.3	0.4	0.026	13.3	0.0	2.6	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_23	PF13476.6	gi|336252840|ref|YP_004595947.1|	-	0.0005	20.6	0.0	0.00077	20.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|336252840|ref|YP_004595947.1|	-	0.0012	18.5	0.6	0.0021	17.7	0.0	1.7	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|336252840|ref|YP_004595947.1|	-	0.0023	18.2	1.6	0.017	15.4	1.6	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|336252840|ref|YP_004595947.1|	-	0.0024	18.0	1.7	0.0058	16.8	0.1	2.4	2	1	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|336252840|ref|YP_004595947.1|	-	0.0061	16.5	0.5	0.017	15.1	0.1	1.8	2	0	0	2	2	2	1	NACHT	domain
RsgA_GTPase	PF03193.16	gi|336252840|ref|YP_004595947.1|	-	0.0069	16.3	0.4	0.016	15.1	0.4	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|336252840|ref|YP_004595947.1|	-	0.0073	16.7	0.8	0.014	15.8	0.8	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|336252840|ref|YP_004595947.1|	-	0.0079	15.9	0.4	0.014	15.1	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|336252840|ref|YP_004595947.1|	-	0.013	16.0	0.0	0.029	14.8	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|336252840|ref|YP_004595947.1|	-	0.043	13.5	0.2	0.28	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|336252840|ref|YP_004595947.1|	-	0.047	13.3	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
TsaE	PF02367.17	gi|336252840|ref|YP_004595947.1|	-	0.052	13.6	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_14	PF13173.6	gi|336252840|ref|YP_004595947.1|	-	0.067	13.2	0.0	0.22	11.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
TIP49	PF06068.13	gi|336252840|ref|YP_004595947.1|	-	0.087	12.0	0.0	0.15	11.2	0.0	1.3	1	0	0	1	1	1	0	TIP49	P-loop	domain
RecA	PF00154.21	gi|336252840|ref|YP_004595947.1|	-	0.095	12.2	0.0	0.31	10.5	0.0	1.7	2	0	0	2	2	2	0	recA	bacterial	DNA	recombination	protein
ATP_bind_1	PF03029.17	gi|336252840|ref|YP_004595947.1|	-	0.12	12.1	0.5	2.8	7.6	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_18	PF13238.6	gi|336252840|ref|YP_004595947.1|	-	0.13	12.9	0.0	0.36	11.4	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|336252840|ref|YP_004595947.1|	-	0.13	11.8	0.2	0.32	10.6	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Cytidylate_kin	PF02224.18	gi|336252840|ref|YP_004595947.1|	-	0.15	11.8	0.1	0.3	10.8	0.1	1.5	1	0	0	1	1	1	0	Cytidylate	kinase
NTPase_1	PF03266.15	gi|336252840|ref|YP_004595947.1|	-	0.17	11.8	0.3	2.2	8.2	0.0	2.1	2	0	0	2	2	2	0	NTPase
RNA_helicase	PF00910.22	gi|336252840|ref|YP_004595947.1|	-	0.17	12.3	0.0	0.32	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|336252840|ref|YP_004595947.1|	-	0.17	11.0	0.1	0.36	10.0	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|336252840|ref|YP_004595947.1|	-	0.29	11.2	0.5	2	8.5	0.1	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Peripla_BP_2	PF01497.18	gi|336252841|ref|YP_004595948.1|	-	1.8e-14	53.9	0.1	2.7e-14	53.3	0.1	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
MacB_PCD	PF12704.7	gi|336252842|ref|YP_004595949.1|	-	5.1e-19	69.4	5.4	5.1e-19	69.4	5.4	2.2	2	2	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|336252842|ref|YP_004595949.1|	-	4.6e-15	55.9	0.8	4.6e-15	55.9	0.8	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
ABC_tran	PF00005.27	gi|336252843|ref|YP_004595950.1|	-	3.4e-33	115.1	0.0	4.9e-33	114.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|336252843|ref|YP_004595950.1|	-	1.7e-07	30.9	0.1	0.0015	18.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336252843|ref|YP_004595950.1|	-	5.7e-05	22.8	0.1	5.7e-05	22.8	0.1	1.7	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.6	gi|336252843|ref|YP_004595950.1|	-	5.8e-05	23.0	0.3	0.2	11.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|336252843|ref|YP_004595950.1|	-	0.0011	19.3	0.3	0.0026	18.2	0.2	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|336252843|ref|YP_004595950.1|	-	0.0021	18.0	0.1	0.0052	16.7	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|336252843|ref|YP_004595950.1|	-	0.0061	16.8	0.4	0.08	13.2	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|336252843|ref|YP_004595950.1|	-	0.026	15.0	0.0	0.04	14.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336252843|ref|YP_004595950.1|	-	0.04	14.0	0.1	0.43	10.7	0.0	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|336252843|ref|YP_004595950.1|	-	0.045	13.3	1.9	0.24	10.9	1.9	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|336252843|ref|YP_004595950.1|	-	0.062	13.0	0.5	0.16	11.6	0.5	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336252843|ref|YP_004595950.1|	-	0.067	13.3	1.0	0.28	11.3	1.0	2.0	1	1	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|336252843|ref|YP_004595950.1|	-	0.096	11.7	0.0	0.16	10.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_24	PF13479.6	gi|336252843|ref|YP_004595950.1|	-	0.17	11.6	0.0	0.32	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Peptidase_S24	PF00717.23	gi|336252844|ref|YP_004595951.1|	-	9.4e-07	28.7	2.4	1.2e-06	28.4	1.1	1.7	2	1	0	2	2	2	1	Peptidase	S24-like
TAT_signal	PF10518.9	gi|336252845|ref|YP_004595952.1|	-	0.031	14.1	7.2	0.052	13.4	7.2	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Rib_5-P_isom_A	PF06026.14	gi|336252846|ref|YP_004595953.1|	-	2.7e-63	212.7	0.0	3.2e-63	212.4	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|336252846|ref|YP_004595953.1|	-	9.3e-07	28.9	0.3	3.9e-05	23.6	0.1	2.2	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
CoA_trans	PF01144.23	gi|336252846|ref|YP_004595953.1|	-	0.037	13.4	0.1	0.13	11.6	0.0	1.9	3	0	0	3	3	3	0	Coenzyme	A	transferase
DUF5518	PF17647.1	gi|336252847|ref|YP_004595954.1|	-	0.0027	17.8	21.6	0.0027	17.8	21.6	3.0	2	1	1	3	3	3	1	Family	of	unknown	function	(DUF5518)
DUF1931	PF09123.11	gi|336252850|ref|YP_004595957.1|	-	2.3e-05	24.5	1.5	2.6e-05	24.4	1.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|336252850|ref|YP_004595957.1|	-	0.0012	19.1	0.1	0.0018	18.5	0.1	1.5	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|336252850|ref|YP_004595957.1|	-	0.064	13.6	0.0	0.064	13.6	0.0	1.2	1	0	0	1	1	1	0	Core	histone	H2A/H2B/H3/H4
Glutaredoxin	PF00462.24	gi|336252850|ref|YP_004595957.1|	-	0.19	12.0	0.4	0.23	11.7	0.4	1.1	1	0	0	1	1	1	0	Glutaredoxin
AIRC	PF00731.20	gi|336252851|ref|YP_004595958.1|	-	6.8e-13	48.5	2.8	6.8e-13	48.5	2.8	1.6	2	0	0	2	2	2	1	AIR	carboxylase
TraB	PF01963.17	gi|336252851|ref|YP_004595958.1|	-	0.033	14.1	0.0	0.051	13.5	0.0	1.2	1	0	0	1	1	1	0	TraB	family
DUF1463	PF07316.11	gi|336252851|ref|YP_004595958.1|	-	0.035	14.0	0.0	0.052	13.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1463)
DUF2267	PF10025.9	gi|336252851|ref|YP_004595958.1|	-	0.04	14.2	0.9	0.071	13.4	0.9	1.5	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2267)
DZR	PF12773.7	gi|336252852|ref|YP_004595959.1|	-	0.016	15.3	0.5	0.02	14.9	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|336252852|ref|YP_004595959.1|	-	0.031	14.6	1.2	0.035	14.5	1.2	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF3268	PF11672.8	gi|336252852|ref|YP_004595959.1|	-	0.036	14.4	0.3	0.036	14.4	0.3	1.0	1	0	0	1	1	1	0	zinc-finger-containing	domain
Zn-ribbon_8	PF09723.10	gi|336252852|ref|YP_004595959.1|	-	0.2	11.8	2.8	0.44	10.7	2.8	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
GIY-YIG	PF01541.24	gi|336252853|ref|YP_004595960.1|	-	1.9e-16	60.1	0.1	2.1e-16	59.9	0.1	1.0	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
FMN_red	PF03358.15	gi|336252854|ref|YP_004595961.1|	-	1.3e-31	109.4	0.0	1.6e-31	109.1	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|336252854|ref|YP_004595961.1|	-	5.6e-11	42.5	0.0	7.4e-11	42.1	0.0	1.3	1	1	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|336252854|ref|YP_004595961.1|	-	0.083	13.1	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	Flavodoxin	domain
PGM_PMM_I	PF02878.16	gi|336252855|ref|YP_004595962.1|	-	2.4e-38	130.9	0.0	4.8e-38	130.0	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.16	gi|336252855|ref|YP_004595962.1|	-	1.8e-23	82.9	0.0	3.1e-23	82.1	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.16	gi|336252855|ref|YP_004595962.1|	-	5e-23	81.7	0.2	5e-23	81.7	0.2	2.1	2	1	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|336252855|ref|YP_004595962.1|	-	7.8e-16	58.0	0.1	2.3e-15	56.5	0.1	1.9	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
EndoU_bacteria	PF14436.6	gi|336252856|ref|YP_004595963.1|	-	0.013	15.9	0.1	0.029	14.7	0.1	1.6	1	0	0	1	1	1	0	Bacterial	EndoU	nuclease
GAT	PF03127.14	gi|336252856|ref|YP_004595963.1|	-	0.15	12.4	2.1	0.37	11.1	2.1	1.7	1	0	0	1	1	1	0	GAT	domain
RXLR	PF16810.5	gi|336252856|ref|YP_004595963.1|	-	0.45	10.9	3.0	0.72	10.3	0.2	2.4	2	0	0	2	2	2	0	RXLR	phytopathogen	effector	protein,	Avirulence	activity
Terminase_GpA	PF05876.12	gi|336252861|ref|YP_004595968.1|	-	0.078	11.5	0.2	0.087	11.4	0.2	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
DNA_ligase_ZBD	PF03119.16	gi|336252861|ref|YP_004595968.1|	-	0.73	9.9	3.2	1.8	8.7	3.2	1.9	1	1	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Hexapep	PF00132.24	gi|336252862|ref|YP_004595969.1|	-	7.1e-14	50.9	8.4	9.9e-09	34.6	0.4	3.3	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336252862|ref|YP_004595969.1|	-	2.4e-07	30.4	8.1	9.2e-07	28.5	1.8	3.1	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.14	gi|336252862|ref|YP_004595969.1|	-	0.00011	22.6	0.0	0.00018	21.8	0.0	1.4	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Bactofilin	PF04519.13	gi|336252862|ref|YP_004595969.1|	-	0.036	14.4	2.6	0.069	13.5	2.6	1.4	1	1	0	1	1	1	0	Polymer-forming	cytoskeletal
Metallophos_2	PF12850.7	gi|336252863|ref|YP_004595970.1|	-	1.6e-32	113.0	0.0	1.9e-32	112.7	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336252863|ref|YP_004595970.1|	-	6.6e-13	49.6	0.4	9.3e-12	45.9	0.4	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|336252863|ref|YP_004595970.1|	-	0.062	12.6	0.3	0.24	10.7	0.1	1.9	2	1	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
DUF4418	PF14387.6	gi|336252864|ref|YP_004595971.1|	-	0.11	12.8	2.9	0.19	12.0	2.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
IMP_cyclohyd	PF07826.11	gi|336252865|ref|YP_004595972.1|	-	7.9e-65	218.1	0.0	9.1e-65	217.8	0.0	1.0	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
HNH	PF01844.23	gi|336252866|ref|YP_004595973.1|	-	0.038	14.2	23.0	3.2	8.0	8.6	3.9	2	2	0	2	2	2	0	HNH	endonuclease
NinF	PF05810.12	gi|336252866|ref|YP_004595973.1|	-	1.2	9.0	6.1	5.4	7.0	0.3	3.0	3	0	0	3	3	3	0	NinF	protein
Rhodanese	PF00581.20	gi|336252867|ref|YP_004595974.1|	-	1.7e-06	28.5	0.1	4.8e-06	27.1	0.1	1.7	1	1	0	1	1	1	1	Rhodanese-like	domain
TAT_signal	PF10518.9	gi|336252867|ref|YP_004595974.1|	-	0.005	16.6	2.1	0.0084	15.9	2.1	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Oxidored_FMN	PF00724.20	gi|336252868|ref|YP_004595975.1|	-	4e-39	134.9	0.0	4.2e-34	118.3	0.0	2.1	1	1	0	2	2	2	2	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Dus	PF01207.17	gi|336252868|ref|YP_004595975.1|	-	0.0024	17.0	0.0	0.0055	15.8	0.0	1.5	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|336252868|ref|YP_004595975.1|	-	0.02	14.3	0.0	0.044	13.3	0.0	1.5	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|336252868|ref|YP_004595975.1|	-	0.062	12.7	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
zf_UBZ	PF18439.1	gi|336252869|ref|YP_004595976.1|	-	0.43	10.2	3.1	1.9	8.1	0.2	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
ADH_N	PF08240.12	gi|336252870|ref|YP_004595977.1|	-	3.3e-28	97.7	1.1	5.2e-28	97.1	0.3	1.7	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336252870|ref|YP_004595977.1|	-	1.3e-20	73.7	0.4	2.1e-20	73.0	0.4	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|336252870|ref|YP_004595977.1|	-	1.7e-08	35.6	1.0	2.9e-08	34.8	1.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
TP_methylase	PF00590.20	gi|336252870|ref|YP_004595977.1|	-	0.01	15.8	0.9	0.09	12.7	0.5	2.2	2	0	0	2	2	2	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Methyltransf_31	PF13847.6	gi|336252870|ref|YP_004595977.1|	-	0.046	13.5	0.1	0.069	12.9	0.1	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Amidohydro_2	PF04909.14	gi|336252871|ref|YP_004595978.1|	-	4.5e-41	141.5	4.7	5.6e-41	141.2	4.7	1.1	1	0	0	1	1	1	1	Amidohydrolase
FeS_assembly_P	PF01883.19	gi|336252872|ref|YP_004595979.1|	-	6.5e-17	61.5	0.1	2.2e-16	59.8	0.1	1.9	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
LEA_2	PF03168.13	gi|336252873|ref|YP_004595980.1|	-	1e-13	51.7	0.0	2.7e-08	34.3	0.0	2.6	2	1	0	2	2	2	2	Late	embryogenesis	abundant	protein
DUF3426	PF11906.8	gi|336252873|ref|YP_004595980.1|	-	0.16	12.1	0.0	0.28	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3426)
CGI-121	PF08617.10	gi|336252874|ref|YP_004595981.1|	-	4.3e-09	36.7	0.0	5e-09	36.5	0.0	1.0	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
PGDYG	PF14083.6	gi|336252874|ref|YP_004595981.1|	-	0.069	13.4	0.1	0.12	12.7	0.1	1.4	1	0	0	1	1	1	0	PGDYG	protein
Stk19	PF10494.9	gi|336252874|ref|YP_004595981.1|	-	0.16	11.7	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
DEAD	PF00270.29	gi|336252875|ref|YP_004595982.1|	-	7.5e-23	81.2	0.0	1.4e-22	80.3	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.6	gi|336252875|ref|YP_004595982.1|	-	4.9e-09	36.7	1.8	1e-08	35.6	0.2	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
ResIII	PF04851.15	gi|336252875|ref|YP_004595982.1|	-	6.8e-08	32.7	0.0	1.4e-07	31.7	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|336252875|ref|YP_004595982.1|	-	1.7e-07	31.6	0.0	1.7e-06	28.3	0.0	2.5	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DNA_pol_lambd_f	PF10391.9	gi|336252875|ref|YP_004595982.1|	-	0.00033	20.4	0.0	0.001	18.9	0.0	1.8	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|336252875|ref|YP_004595982.1|	-	0.038	13.9	0.0	1.9	8.5	0.0	3.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
FCD	PF07729.12	gi|336252875|ref|YP_004595982.1|	-	0.8	10.1	5.1	0.47	10.9	0.8	2.6	2	0	0	2	2	2	0	FCD	domain
MgtE	PF01769.16	gi|336252876|ref|YP_004595983.1|	-	4e-26	91.8	11.3	6.6e-26	91.1	11.3	1.3	1	0	0	1	1	1	1	Divalent	cation	transporter
MgtE_N	PF03448.17	gi|336252876|ref|YP_004595983.1|	-	3.9e-14	53.1	2.2	3.9e-14	53.1	2.2	2.3	3	0	0	3	3	3	1	MgtE	intracellular	N	domain
CBS	PF00571.28	gi|336252876|ref|YP_004595983.1|	-	1.7e-07	31.6	5.4	0.00059	20.2	0.6	3.0	3	0	0	3	3	3	2	CBS	domain
FliG_M	PF14841.6	gi|336252876|ref|YP_004595983.1|	-	0.12	12.6	0.0	0.4	10.9	0.0	1.9	1	0	0	1	1	1	0	FliG	middle	domain
FliG_C	PF01706.16	gi|336252876|ref|YP_004595983.1|	-	0.13	12.5	0.0	0.81	9.9	0.0	2.2	2	0	0	2	2	2	0	FliG	C-terminal	domain
PHO4	PF01384.20	gi|336252877|ref|YP_004595984.1|	-	1.2e-12	47.6	10.3	1.2e-12	47.6	10.3	1.3	1	1	0	1	1	1	1	Phosphate	transporter	family
Alk_phosphatase	PF00245.20	gi|336252878|ref|YP_004595985.1|	-	5e-76	256.3	5.0	6.9e-76	255.8	5.0	1.2	1	0	0	1	1	1	1	Alkaline	phosphatase
Metalloenzyme	PF01676.18	gi|336252878|ref|YP_004595985.1|	-	0.00094	18.6	1.1	0.0012	18.3	0.1	1.6	2	0	0	2	2	2	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|336252878|ref|YP_004595985.1|	-	0.054	13.1	0.2	0.14	11.7	0.2	1.8	1	1	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
EF-hand_6	PF13405.6	gi|336252878|ref|YP_004595985.1|	-	0.14	12.2	0.2	0.42	10.7	0.2	1.8	1	0	0	1	1	1	0	EF-hand	domain
Fer4_15	PF13459.6	gi|336252879|ref|YP_004595986.1|	-	1.7e-20	73.5	4.7	2e-20	73.3	4.7	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|336252879|ref|YP_004595986.1|	-	6.6e-06	26.6	1.0	1.2e-05	25.7	1.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4	PF00037.27	gi|336252879|ref|YP_004595986.1|	-	0.041	13.7	1.6	3.2	7.7	0.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_19	PF06902.11	gi|336252879|ref|YP_004595986.1|	-	0.067	13.3	0.2	0.44	10.7	0.2	2.0	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_6	PF12837.7	gi|336252879|ref|YP_004595986.1|	-	0.23	11.6	1.6	2.7	8.2	0.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Ldh_1_N	PF00056.23	gi|336252880|ref|YP_004595987.1|	-	6.6e-40	136.5	0.4	9.9e-40	135.9	0.4	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|336252880|ref|YP_004595987.1|	-	1.3e-29	103.3	0.0	2e-29	102.7	0.0	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
LDcluster4	PF18306.1	gi|336252881|ref|YP_004595988.1|	-	4e-37	127.2	4.8	4.5e-37	127.1	4.8	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
Lysine_decarbox	PF03641.14	gi|336252881|ref|YP_004595988.1|	-	3.8e-07	30.3	0.1	6.7e-07	29.5	0.1	1.4	1	0	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.15	gi|336252881|ref|YP_004595988.1|	-	0.00043	19.6	3.6	0.0006	19.1	3.6	1.2	1	0	0	1	1	1	1	DNA	recombination-mediator	protein	A
Acetyltransf_10	PF13673.7	gi|336252882|ref|YP_004595989.1|	-	4.6e-14	52.5	0.0	6.5e-14	52.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336252882|ref|YP_004595989.1|	-	1.6e-12	47.6	0.0	2.3e-12	47.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336252882|ref|YP_004595989.1|	-	8.2e-12	45.4	0.0	1e-11	45.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|336252882|ref|YP_004595989.1|	-	9.1e-07	29.0	0.0	1.3e-06	28.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336252882|ref|YP_004595989.1|	-	0.00029	20.7	0.0	0.00065	19.6	0.0	1.6	1	1	0	1	1	1	1	FR47-like	protein
GNAT_acetyltr_2	PF13718.6	gi|336252882|ref|YP_004595989.1|	-	0.024	14.1	0.0	0.032	13.6	0.0	1.1	1	0	0	1	1	1	0	GNAT	acetyltransferase	2
NodA	PF02474.15	gi|336252882|ref|YP_004595989.1|	-	0.051	13.3	0.0	0.067	12.9	0.0	1.1	1	0	0	1	1	1	0	Nodulation	protein	A	(NodA)
Acetyltransf_3	PF13302.7	gi|336252882|ref|YP_004595989.1|	-	0.12	13.1	0.0	0.12	13.0	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336252882|ref|YP_004595989.1|	-	0.14	12.3	0.1	0.2	11.8	0.1	1.2	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Auto_anti-p27	PF06677.12	gi|336252883|ref|YP_004595990.1|	-	1.3e-13	50.9	1.3	1.8e-13	50.4	1.3	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.7	gi|336252883|ref|YP_004595990.1|	-	0.011	15.8	1.0	0.026	14.5	1.0	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|336252883|ref|YP_004595990.1|	-	0.063	13.2	0.8	0.11	12.4	0.8	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-RRN7	PF11781.8	gi|336252883|ref|YP_004595990.1|	-	0.56	9.9	4.1	2.2	8.0	4.1	1.9	1	1	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zinc_ribbon_2	PF13240.6	gi|336252883|ref|YP_004595990.1|	-	1.6	8.5	5.8	5.1	7.0	5.7	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
SPX	PF03105.19	gi|336252883|ref|YP_004595990.1|	-	2.4	8.0	11.4	2.9	7.7	11.4	1.3	1	0	0	1	1	1	0	SPX	domain
SOG2	PF10428.9	gi|336252883|ref|YP_004595990.1|	-	2.9	7.0	11.4	3.6	6.7	11.4	1.2	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Cu-oxidase_2	PF07731.14	gi|336252884|ref|YP_004595991.1|	-	4.8e-30	104.1	12.6	1.1e-19	70.6	1.6	3.2	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_3	PF07732.15	gi|336252884|ref|YP_004595991.1|	-	1.1e-22	80.3	7.7	8.6e-19	67.7	1.8	2.6	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase	PF00394.22	gi|336252884|ref|YP_004595991.1|	-	1.1e-13	51.6	0.1	2.8e-13	50.3	0.0	1.7	2	0	0	2	2	2	1	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|336252884|ref|YP_004595991.1|	-	0.00035	20.6	0.0	0.23	11.6	0.0	2.8	2	1	0	2	2	2	2	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|336252884|ref|YP_004595991.1|	-	0.029	14.2	3.9	0.049	13.5	3.9	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Helicase_C	PF00271.31	gi|336252885|ref|YP_004595992.1|	-	3.8e-23	82.0	0.0	9e-22	77.5	0.0	2.6	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ERCC4	PF02732.15	gi|336252885|ref|YP_004595992.1|	-	4.6e-23	82.2	0.0	1.1e-22	80.9	0.0	1.7	1	0	0	1	1	1	1	ERCC4	domain
DEAD	PF00270.29	gi|336252885|ref|YP_004595992.1|	-	2.2e-15	56.9	0.0	6.5e-15	55.3	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|336252885|ref|YP_004595992.1|	-	1.1e-12	48.4	0.0	3e-12	46.9	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.6	gi|336252885|ref|YP_004595992.1|	-	1.1e-08	35.6	0.9	1.8e-07	31.6	0.2	3.0	3	0	0	3	3	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|336252885|ref|YP_004595992.1|	-	1.4e-08	34.7	0.6	7.4e-08	32.4	0.2	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|336252885|ref|YP_004595992.1|	-	1e-05	25.1	0.5	0.0016	18.2	0.1	3.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
Helicase_C_2	PF13307.6	gi|336252885|ref|YP_004595992.1|	-	0.011	15.9	0.3	0.088	13.0	0.0	2.6	1	1	1	2	2	2	0	Helicase	C-terminal	domain
5_3_exonuc	PF01367.20	gi|336252885|ref|YP_004595992.1|	-	0.039	14.5	0.0	0.19	12.4	0.0	2.3	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
MEDS	PF14417.6	gi|336252885|ref|YP_004595992.1|	-	0.062	13.1	0.4	19	5.1	0.0	3.0	2	0	0	2	2	2	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
MtrB	PF05440.12	gi|336252885|ref|YP_004595992.1|	-	0.089	13.2	0.1	0.32	11.4	0.1	1.9	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
OAM_dimer	PF16554.5	gi|336252885|ref|YP_004595992.1|	-	0.12	12.9	0.0	0.32	11.5	0.0	1.7	1	0	0	1	1	1	0	Dimerisation	domain	of	d-ornithine	4,5-aminomutase
DUF4407	PF14362.6	gi|336252885|ref|YP_004595992.1|	-	0.29	10.4	9.5	0.8	9.0	2.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
DUF4618	PF15397.6	gi|336252885|ref|YP_004595992.1|	-	0.36	10.2	6.5	0.25	10.7	3.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
RsbRD_N	PF14361.6	gi|336252885|ref|YP_004595992.1|	-	1.4	9.6	6.9	0.26	12.0	0.2	3.2	3	0	0	3	3	3	0	RsbT	co-antagonist	protein	rsbRD	N-terminal	domain
TolA_bind_tri	PF16331.5	gi|336252885|ref|YP_004595992.1|	-	7.2	6.8	9.4	4.4	7.5	1.3	2.6	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
Metallophos	PF00149.28	gi|336252887|ref|YP_004595994.1|	-	1.1e-09	39.1	0.0	1.4e-09	38.7	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|336252887|ref|YP_004595994.1|	-	9e-07	29.2	0.0	1.4e-06	28.6	0.0	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|336252887|ref|YP_004595994.1|	-	0.14	11.5	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
PP_kinase_C_1	PF17941.1	gi|336252888|ref|YP_004595995.1|	-	3.8e-73	244.5	0.7	1.5e-72	242.5	0.4	2.1	3	0	0	3	3	3	1	Polyphosphate	kinase	C-terminal	domain	1
PP_kinase_C	PF13090.6	gi|336252888|ref|YP_004595995.1|	-	5.1e-66	221.4	0.0	3.8e-64	215.3	0.0	2.3	2	0	0	2	2	2	1	Polyphosphate	kinase	C-terminal	domain	2
PP_kinase	PF02503.17	gi|336252888|ref|YP_004595995.1|	-	1.9e-65	220.3	3.1	3.9e-65	219.2	3.1	1.6	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.6	gi|336252888|ref|YP_004595995.1|	-	2.6e-36	124.2	0.0	8.3e-36	122.6	0.0	1.9	1	0	0	1	1	1	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.6	gi|336252888|ref|YP_004595995.1|	-	1.7e-15	57.1	0.0	4.3e-07	29.9	0.1	2.5	2	0	0	2	2	2	2	PLD-like	domain
MR_MLE_C	PF13378.6	gi|336252888|ref|YP_004595995.1|	-	0.04	13.5	3.2	0.042	13.4	0.4	2.2	2	0	0	2	2	2	0	Enolase	C-terminal	domain-like
PP2C_C	PF07830.13	gi|336252889|ref|YP_004595996.1|	-	0.42	11.1	2.3	12	6.4	0.2	2.1	2	0	0	2	2	2	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
Glyco_trans_2_3	PF13632.6	gi|336252890|ref|YP_004595997.1|	-	8.1e-11	42.2	3.8	8.1e-11	42.2	3.8	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|336252890|ref|YP_004595997.1|	-	0.091	12.6	7.4	0.74	9.6	7.4	2.0	1	1	0	1	1	1	0	Glycosyltransferase	like	family	2
HGTP_anticodon	PF03129.20	gi|336252892|ref|YP_004595999.1|	-	1.2e-23	83.1	0.1	2.6e-23	82.0	0.1	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|336252892|ref|YP_004595999.1|	-	1.7e-09	37.9	0.0	1.1e-08	35.3	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-ribbon_3	PF13248.6	gi|336252892|ref|YP_004595999.1|	-	0.002	17.5	0.3	2	7.9	0.0	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Ribosomal_L32p	PF01783.23	gi|336252892|ref|YP_004595999.1|	-	0.019	15.2	0.1	0.48	10.7	0.0	2.8	3	0	0	3	3	3	0	Ribosomal	L32p	protein	family
Zn-ribbon_8	PF09723.10	gi|336252892|ref|YP_004595999.1|	-	0.052	13.7	0.4	9.8	6.4	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|336252892|ref|YP_004595999.1|	-	0.055	13.0	2.2	1	8.9	2.2	2.6	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|336252892|ref|YP_004595999.1|	-	0.11	12.3	1.5	12	5.8	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|336252892|ref|YP_004595999.1|	-	0.17	11.6	1.7	1.1	8.9	0.0	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|336252892|ref|YP_004595999.1|	-	0.48	10.4	1.6	6.7	6.7	0.1	2.4	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-ACC	PF17848.1	gi|336252892|ref|YP_004595999.1|	-	1.2	9.3	2.5	17	5.6	0.0	2.4	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
CBS	PF00571.28	gi|336252893|ref|YP_004596000.1|	-	1.7e-33	114.8	6.7	6.9e-11	42.4	0.1	4.1	4	0	0	4	4	4	4	CBS	domain
DUF2288	PF10052.9	gi|336252893|ref|YP_004596000.1|	-	0.79	9.8	2.8	0.91	9.7	0.3	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2288)
DoxX	PF07681.12	gi|336252895|ref|YP_004596002.1|	-	2.4e-14	53.7	14.4	1e-13	51.6	10.1	2.2	2	0	0	2	2	2	2	DoxX
HR_lesion	PF05514.11	gi|336252895|ref|YP_004596002.1|	-	8.3e-05	22.8	0.2	0.00089	19.5	0.1	2.0	1	1	1	2	2	2	1	HR-like	lesion-inducing
YtpI	PF14007.6	gi|336252895|ref|YP_004596002.1|	-	1.1	9.5	4.6	45	4.3	2.6	2.5	1	1	1	2	2	2	0	YtpI-like	protein
BsuPI	PF12690.7	gi|336252896|ref|YP_004596003.1|	-	0.069	13.2	0.0	4.3	7.4	0.0	2.2	2	0	0	2	2	2	0	Intracellular	proteinase	inhibitor
ABC_tran	PF00005.27	gi|336252898|ref|YP_004596005.1|	-	2.6e-32	112.2	0.0	4e-32	111.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336252898|ref|YP_004596005.1|	-	4.1e-18	65.7	0.1	9.2e-18	64.5	0.1	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|336252898|ref|YP_004596005.1|	-	2e-06	27.4	0.0	2.8e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336252898|ref|YP_004596005.1|	-	0.00047	20.6	0.0	0.00086	19.7	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336252898|ref|YP_004596005.1|	-	0.0036	17.6	0.3	0.031	14.5	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|336252898|ref|YP_004596005.1|	-	0.0088	15.9	0.1	1.8	8.3	0.0	2.5	2	1	1	3	3	3	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|336252898|ref|YP_004596005.1|	-	0.012	15.4	0.0	0.024	14.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|336252898|ref|YP_004596005.1|	-	0.022	15.2	0.0	0.098	13.1	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|336252898|ref|YP_004596005.1|	-	0.025	14.5	0.0	0.046	13.6	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
PRK	PF00485.18	gi|336252898|ref|YP_004596005.1|	-	0.055	13.2	0.0	0.089	12.5	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
ATP-synt_ab	PF00006.25	gi|336252898|ref|YP_004596005.1|	-	0.082	12.6	0.0	0.087	12.5	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|336252898|ref|YP_004596005.1|	-	0.11	12.5	0.1	0.21	11.6	0.1	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ABC_tran	PF00005.27	gi|336252899|ref|YP_004596006.1|	-	2.1e-26	93.0	0.0	3.5e-26	92.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336252899|ref|YP_004596006.1|	-	1.2e-19	70.6	0.4	2.3e-19	69.7	0.4	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336252899|ref|YP_004596006.1|	-	1.5e-05	24.9	0.1	0.00014	21.8	0.0	2.0	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336252899|ref|YP_004596006.1|	-	0.038	13.4	0.0	0.15	11.5	0.0	1.7	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_5	PF07728.14	gi|336252899|ref|YP_004596006.1|	-	0.064	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.6	gi|336252899|ref|YP_004596006.1|	-	0.15	11.6	0.1	1.3	8.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|336252899|ref|YP_004596006.1|	-	0.21	11.5	0.0	0.35	10.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
BPD_transp_1	PF00528.22	gi|336252900|ref|YP_004596007.1|	-	3.3e-32	111.7	11.6	4.6e-32	111.2	8.6	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336252900|ref|YP_004596007.1|	-	0.044	13.8	0.0	0.044	13.8	0.0	3.3	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|336252901|ref|YP_004596008.1|	-	1.3e-41	142.4	9.0	1.3e-41	142.4	9.0	1.9	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
HTH_psq	PF05225.16	gi|336252901|ref|YP_004596008.1|	-	0.12	12.1	0.0	0.28	10.9	0.0	1.6	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
Renin_r	PF07850.14	gi|336252901|ref|YP_004596008.1|	-	2.7	8.6	5.3	1.4	9.6	1.3	2.2	2	0	0	2	2	2	0	Renin	receptor-like	protein
SBP_bac_5	PF00496.22	gi|336252902|ref|YP_004596009.1|	-	6.7e-70	235.9	3.1	8.9e-70	235.5	3.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336252902|ref|YP_004596009.1|	-	0.18	11.7	3.6	0.36	10.7	3.6	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF296	PF03479.15	gi|336252903|ref|YP_004596010.1|	-	2e-17	63.5	0.0	2.5e-17	63.2	0.0	1.0	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
PolC_DP2	PF03833.13	gi|336252904|ref|YP_004596011.1|	-	0	1322.4	0.0	0	1319.9	0.0	1.8	2	0	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
HypA	PF01155.19	gi|336252904|ref|YP_004596011.1|	-	0.0078	16.2	16.0	0.85	9.7	0.1	3.5	2	1	1	3	3	3	3	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|336252904|ref|YP_004596011.1|	-	0.094	12.7	16.3	5.4	7.1	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbons
DZR	PF12773.7	gi|336252904|ref|YP_004596011.1|	-	0.19	11.8	18.1	2.4	8.3	0.5	2.9	2	1	0	2	2	2	0	Double	zinc	ribbon
Calycin_like	PF13944.6	gi|336252905|ref|YP_004596012.1|	-	0.078	13.3	1.4	2.9	8.2	0.3	3.3	3	0	0	3	3	3	0	Calycin-like	beta-barrel	domain
Fn3-like	PF14310.6	gi|336252905|ref|YP_004596012.1|	-	0.9	9.7	3.0	8.2	6.6	0.1	3.6	2	2	1	3	3	3	0	Fibronectin	type	III-like	domain
Big_1	PF02369.16	gi|336252905|ref|YP_004596012.1|	-	3	7.9	12.3	15	5.7	0.4	4.3	4	1	0	4	4	4	0	Bacterial	Ig-like	domain	(group	1)
HypA	PF01155.19	gi|336252906|ref|YP_004596013.1|	-	0.0024	17.9	0.1	0.004	17.2	0.0	1.4	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|336252906|ref|YP_004596013.1|	-	0.0044	16.7	1.9	0.12	12.1	0.1	2.2	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
NRDD	PF13597.6	gi|336252906|ref|YP_004596013.1|	-	0.022	13.5	0.3	0.029	13.2	0.3	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
DNA_RNApol_7kD	PF03604.13	gi|336252906|ref|YP_004596013.1|	-	0.054	13.2	1.3	0.093	12.4	1.3	1.3	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DZR	PF12773.7	gi|336252906|ref|YP_004596013.1|	-	0.054	13.5	1.3	0.13	12.3	1.3	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Rubredoxin	PF00301.20	gi|336252906|ref|YP_004596013.1|	-	0.063	13.3	1.1	8.1	6.6	0.5	2.4	1	1	1	2	2	2	0	Rubredoxin
Zn-ribbon_8	PF09723.10	gi|336252906|ref|YP_004596013.1|	-	0.2	11.8	3.5	0.46	10.7	3.2	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
HalOD2	PF18547.1	gi|336252906|ref|YP_004596013.1|	-	0.38	10.7	7.9	6.3	6.8	1.3	3.1	2	1	1	3	3	3	0	Halobacterial	output	domain	2
zinc_ribbon_2	PF13240.6	gi|336252906|ref|YP_004596013.1|	-	0.48	10.2	5.1	0.82	9.5	1.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.19	gi|336252907|ref|YP_004596014.1|	-	0.00019	21.4	0.0	0.00025	21.0	0.0	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|336252907|ref|YP_004596014.1|	-	0.0015	17.9	1.2	0.6	9.6	0.3	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Rubredoxin	PF00301.20	gi|336252907|ref|YP_004596014.1|	-	0.0042	17.1	2.0	1	9.5	0.7	2.3	1	1	1	2	2	2	2	Rubredoxin
Rubredoxin_2	PF18073.1	gi|336252907|ref|YP_004596014.1|	-	0.0093	15.7	3.9	0.18	11.6	0.6	2.2	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
PRC	PF05239.16	gi|336252907|ref|YP_004596014.1|	-	0.021	14.9	0.1	0.028	14.5	0.1	1.3	1	0	0	1	1	1	0	PRC-barrel	domain
DZR	PF12773.7	gi|336252907|ref|YP_004596014.1|	-	0.021	14.8	0.3	0.029	14.4	0.3	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336252907|ref|YP_004596014.1|	-	0.056	13.2	4.3	0.44	10.3	0.6	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336252907|ref|YP_004596014.1|	-	0.17	12.0	3.1	0.41	10.8	3.2	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Gar1	PF04410.14	gi|336252907|ref|YP_004596014.1|	-	0.21	11.3	0.0	0.29	10.9	0.0	1.2	1	0	0	1	1	1	0	Gar1/Naf1	RNA	binding	region
Anti-TRAP	PF15777.5	gi|336252907|ref|YP_004596014.1|	-	0.75	9.8	4.4	0.52	10.3	2.8	1.6	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HscB_4_cys	PF18256.1	gi|336252907|ref|YP_004596014.1|	-	0.76	9.6	7.5	8.8	6.2	8.0	2.3	1	1	1	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
HalOD2	PF18547.1	gi|336252907|ref|YP_004596014.1|	-	0.99	9.4	6.8	3.6	7.6	0.5	2.6	3	0	0	3	3	3	0	Halobacterial	output	domain	2
ApbA_C	PF08546.11	gi|336252908|ref|YP_004596015.1|	-	2.8e-34	118.0	1.0	4.2e-34	117.4	1.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.16	gi|336252908|ref|YP_004596015.1|	-	3.1e-30	104.8	0.1	5.3e-30	104.1	0.1	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DUF4392	PF14336.6	gi|336252908|ref|YP_004596015.1|	-	0.028	13.9	0.9	0.044	13.2	0.4	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4392)
NifU	PF01106.17	gi|336252909|ref|YP_004596016.1|	-	1.2e-13	51.0	0.0	1.8e-13	50.4	0.0	1.4	1	0	0	1	1	1	1	NifU-like	domain
DUF5605	PF18310.1	gi|336252910|ref|YP_004596017.1|	-	0.025	14.5	0.0	0.039	13.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5605)
DUF2891	PF11199.8	gi|336252910|ref|YP_004596017.1|	-	0.081	11.9	0.2	4.8	6.0	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2891)
OmpH	PF03938.14	gi|336252912|ref|YP_004596019.1|	-	0.032	14.6	1.8	0.055	13.8	1.8	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
FadA	PF09403.10	gi|336252912|ref|YP_004596019.1|	-	0.11	13.0	1.7	0.21	12.1	1.2	1.6	2	0	0	2	2	2	0	Adhesion	protein	FadA
GIT1_C	PF12205.8	gi|336252912|ref|YP_004596019.1|	-	0.31	11.2	2.1	0.35	11.0	0.1	2.1	3	0	0	3	3	3	0	G	protein-coupled	receptor	kinase-interacting	protein	1	C	term
DUF4164	PF13747.6	gi|336252912|ref|YP_004596019.1|	-	0.37	11.1	12.8	4.3	7.7	2.7	3.7	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF4164)
Syntaxin-6_N	PF09177.11	gi|336252912|ref|YP_004596019.1|	-	0.43	11.2	3.1	2.8	8.6	1.7	2.5	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
ZapB	PF06005.12	gi|336252912|ref|YP_004596019.1|	-	1	9.9	6.2	20	5.7	0.2	3.0	3	0	0	3	3	3	0	Cell	division	protein	ZapB
THOC7	PF05615.13	gi|336252912|ref|YP_004596019.1|	-	1.1	9.6	8.3	0.28	11.5	4.3	1.9	2	0	0	2	2	2	0	Tho	complex	subunit	7
T7SS_ESX_EspC	PF10824.8	gi|336252912|ref|YP_004596019.1|	-	1.5	9.4	7.7	0.24	11.9	2.3	2.4	2	2	0	2	2	2	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
PHP_C	PF13263.6	gi|336252914|ref|YP_004596021.1|	-	3.6e-22	77.9	0.3	1.9e-21	75.5	0.2	2.1	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.19	gi|336252914|ref|YP_004596021.1|	-	2.8e-05	24.5	0.0	6.5e-05	23.3	0.0	1.5	1	1	0	1	1	1	1	PHP	domain
DHHA1	PF02272.19	gi|336252915|ref|YP_004596022.1|	-	4.4e-19	69.3	1.2	1e-18	68.0	1.2	1.7	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|336252915|ref|YP_004596022.1|	-	0.014	15.7	0.4	0.055	13.7	0.4	2.0	1	1	0	1	1	1	0	DHH	family
PGDYG	PF14083.6	gi|336252915|ref|YP_004596022.1|	-	0.062	13.5	0.0	0.15	12.3	0.0	1.6	1	0	0	1	1	1	0	PGDYG	protein
HEM4	PF02602.15	gi|336252916|ref|YP_004596023.1|	-	1e-42	146.1	2.4	1.3e-42	145.8	2.4	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
TP_methylase	PF00590.20	gi|336252917|ref|YP_004596024.1|	-	1.9e-55	188.1	0.6	2.5e-55	187.7	0.6	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Porphobil_deam	PF01379.20	gi|336252918|ref|YP_004596025.1|	-	4.1e-66	222.4	0.5	1.7e-52	177.9	0.2	2.1	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|336252918|ref|YP_004596025.1|	-	5.3e-09	36.3	0.0	1.3e-08	35.1	0.0	1.6	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
DUF917	PF06032.12	gi|336252918|ref|YP_004596025.1|	-	0.021	13.7	0.0	0.39	9.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF917)
Bac_globin	PF01152.21	gi|336252919|ref|YP_004596026.1|	-	4.1e-23	81.8	0.2	4.6e-23	81.7	0.2	1.0	1	0	0	1	1	1	1	Bacterial-like	globin
Protoglobin	PF11563.8	gi|336252919|ref|YP_004596026.1|	-	0.00013	21.9	0.2	0.0003	20.7	0.2	1.7	1	1	0	1	1	1	1	Protoglobin
Imm74	PF15603.6	gi|336252919|ref|YP_004596026.1|	-	0.1	12.8	0.3	1.1	9.5	0.1	2.3	1	1	1	2	2	2	0	Immunity	protein	74
COX1	PF00115.20	gi|336252920|ref|YP_004596027.1|	-	3.2e-59	200.9	48.9	3.2e-59	200.9	48.9	1.5	2	0	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF2871	PF11070.8	gi|336252920|ref|YP_004596027.1|	-	0.0071	16.6	2.6	0.0071	16.6	2.6	2.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2871)
HATPase_c	PF02518.26	gi|336252921|ref|YP_004596028.1|	-	1.9e-15	57.3	0.0	3.3e-15	56.6	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|336252921|ref|YP_004596028.1|	-	1.1e-08	34.9	3.0	2.4e-08	33.7	3.0	1.6	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|336252921|ref|YP_004596028.1|	-	1.9e-08	34.3	0.0	4.8e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.25	gi|336252921|ref|YP_004596028.1|	-	7.1e-05	22.8	1.0	0.00014	21.8	0.2	1.9	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|336252921|ref|YP_004596028.1|	-	0.00077	19.3	0.0	0.0014	18.5	0.0	1.3	1	0	0	1	1	1	1	GHKL	domain
SPOB_a	PF14689.6	gi|336252921|ref|YP_004596028.1|	-	0.0082	15.8	0.2	0.016	14.9	0.2	1.4	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HATPase_c_3	PF13589.6	gi|336252921|ref|YP_004596028.1|	-	0.0097	15.7	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
OATP	PF03137.20	gi|336252921|ref|YP_004596028.1|	-	0.59	8.3	0.9	0.85	7.8	0.9	1.2	1	0	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
2TM	PF13239.6	gi|336252921|ref|YP_004596028.1|	-	3.3	8.1	4.5	3.2	8.1	3.3	1.6	1	1	0	1	1	1	0	2TM	domain
DUF4381	PF14316.6	gi|336252921|ref|YP_004596028.1|	-	4.4	7.5	9.5	1.3	9.2	4.9	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4381)
Aminotran_3	PF00202.21	gi|336252922|ref|YP_004596029.1|	-	1.3e-68	231.6	0.0	1.5e-68	231.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|336252922|ref|YP_004596029.1|	-	0.031	13.4	0.0	0.047	12.9	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Ammonium_transp	PF00909.21	gi|336252923|ref|YP_004596030.1|	-	1.1e-94	317.4	38.0	1.3e-94	317.2	38.0	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
P-II	PF00543.22	gi|336252923|ref|YP_004596030.1|	-	5.6e-34	116.8	1.0	7.8e-34	116.3	0.1	1.8	2	0	0	2	2	2	1	Nitrogen	regulatory	protein	P-II
PsbY	PF06298.11	gi|336252923|ref|YP_004596030.1|	-	0.71	9.8	5.8	0.19	11.7	0.2	2.6	2	0	0	2	2	2	0	Photosystem	II	protein	Y	(PsbY)
ALAD	PF00490.21	gi|336252924|ref|YP_004596031.1|	-	8.7e-142	471.9	0.0	1e-141	471.7	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
TrmB	PF01978.19	gi|336252926|ref|YP_004596033.1|	-	4.7e-21	74.4	0.4	9.4e-21	73.5	0.1	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|336252926|ref|YP_004596033.1|	-	6.2e-05	22.3	0.1	8.5e-05	21.8	0.1	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|336252926|ref|YP_004596033.1|	-	0.00018	21.9	0.4	0.0095	16.4	0.1	2.7	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|336252926|ref|YP_004596033.1|	-	0.00092	19.4	0.0	0.082	13.1	0.0	2.3	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|336252926|ref|YP_004596033.1|	-	0.0021	17.9	2.2	0.0025	17.6	0.3	2.1	2	1	1	3	3	3	1	MarR	family
HTH_IclR	PF09339.10	gi|336252926|ref|YP_004596033.1|	-	0.006	16.4	0.0	0.31	10.9	0.0	2.5	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
RuvA_C	PF07499.13	gi|336252926|ref|YP_004596033.1|	-	0.038	14.5	3.0	2.3	8.8	0.1	3.4	3	0	0	3	3	3	0	RuvA,	C-terminal	domain
Rrf2	PF02082.20	gi|336252926|ref|YP_004596033.1|	-	0.049	14.0	0.0	0.1	13.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
LexA_DNA_bind	PF01726.16	gi|336252926|ref|YP_004596033.1|	-	0.067	13.0	0.0	0.33	10.7	0.0	2.2	3	0	0	3	3	3	0	LexA	DNA	binding	domain
HTH_23	PF13384.6	gi|336252926|ref|YP_004596033.1|	-	0.075	12.9	0.1	0.19	11.6	0.1	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_20	PF12840.7	gi|336252926|ref|YP_004596033.1|	-	0.12	12.5	0.3	0.34	11.0	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|336252926|ref|YP_004596033.1|	-	0.13	12.3	0.0	0.28	11.2	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF2250	PF10007.9	gi|336252926|ref|YP_004596033.1|	-	0.13	12.3	0.0	1.5	8.9	0.0	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MCPVI	PF02993.14	gi|336252926|ref|YP_004596033.1|	-	0.15	11.9	0.1	0.2	11.4	0.1	1.2	1	0	0	1	1	1	0	Minor	capsid	protein	VI
Acetyltransf_1	PF00583.25	gi|336252927|ref|YP_004596034.1|	-	3.6e-14	53.0	0.0	4.3e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336252927|ref|YP_004596034.1|	-	2.1e-08	34.5	0.0	2.6e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336252927|ref|YP_004596034.1|	-	7.9e-06	25.8	0.0	9.5e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336252927|ref|YP_004596034.1|	-	0.0018	18.2	0.0	0.0028	17.6	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.6	gi|336252927|ref|YP_004596034.1|	-	0.0077	16.3	0.1	0.099	12.8	0.0	2.0	1	1	1	2	2	2	1	GCN5-related	N-acetyl-transferase
Fer4	PF00037.27	gi|336252928|ref|YP_004596035.1|	-	7.1e-11	41.5	13.8	3.4e-07	29.8	5.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|336252928|ref|YP_004596035.1|	-	6.9e-10	39.4	1.8	7.1e-05	23.3	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336252928|ref|YP_004596035.1|	-	3.6e-08	33.4	4.8	5.5e-08	32.9	4.8	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252928|ref|YP_004596035.1|	-	3e-07	30.5	17.7	2.7e-05	24.2	7.4	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336252928|ref|YP_004596035.1|	-	3e-06	27.0	13.6	4e-05	23.5	5.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336252928|ref|YP_004596035.1|	-	6.3e-06	26.2	10.3	4.5e-05	23.5	10.4	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|336252928|ref|YP_004596035.1|	-	7.2e-06	26.8	4.7	0.00029	21.7	1.1	2.4	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|336252928|ref|YP_004596035.1|	-	1.3e-05	25.6	1.1	0.024	15.2	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252928|ref|YP_004596035.1|	-	0.0001	22.7	6.4	0.0033	17.8	6.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336252928|ref|YP_004596035.1|	-	0.00033	20.6	11.1	0.0093	16.0	4.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336252928|ref|YP_004596035.1|	-	0.00064	20.0	1.6	0.00064	20.0	1.6	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336252928|ref|YP_004596035.1|	-	0.00075	19.7	3.1	0.00075	19.7	3.1	2.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|336252928|ref|YP_004596035.1|	-	0.0023	18.7	4.1	0.0023	18.7	4.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|336252928|ref|YP_004596035.1|	-	0.0024	18.0	0.1	0.003	17.6	0.1	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_13	PF13370.6	gi|336252928|ref|YP_004596035.1|	-	0.0075	16.8	14.1	0.24	11.9	14.1	2.6	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
E3_UbLigase_RBR	PF18091.1	gi|336252929|ref|YP_004596036.1|	-	0.038	14.1	0.1	0.042	14.0	0.1	1.2	1	0	0	1	1	1	0	E3	Ubiquitin	Ligase	RBR	C-terminal	domain
PHP	PF02811.19	gi|336252930|ref|YP_004596037.1|	-	3.9e-05	24.0	0.0	4.5e-05	23.8	0.0	1.3	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|336252930|ref|YP_004596037.1|	-	0.0041	16.8	0.1	0.01	15.6	0.1	1.6	1	0	0	1	1	1	1	PHP-associated
DUF2795	PF11387.8	gi|336252931|ref|YP_004596038.1|	-	1.7e-05	24.9	0.0	3.2e-05	24.1	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
GvpG	PF05120.12	gi|336252933|ref|YP_004596040.1|	-	3.6	7.7	6.2	11	6.1	0.3	2.3	1	1	1	2	2	2	0	Gas	vesicle	protein	G
CxxCxxCC	PF03692.15	gi|336252934|ref|YP_004596041.1|	-	0.0002	22.0	2.5	0.0074	17.0	2.5	2.3	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
CMD	PF02627.20	gi|336252934|ref|YP_004596041.1|	-	2.6	8.2	5.8	3.7	7.7	0.3	2.4	2	0	0	2	2	2	0	Carboxymuconolactone	decarboxylase	family
Helicase_C_2	PF13307.6	gi|336252936|ref|YP_004596043.1|	-	3.5e-21	76.1	0.0	5.2e-21	75.6	0.0	1.2	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|336252936|ref|YP_004596043.1|	-	5.3e-06	26.2	0.0	8.7e-06	25.5	0.0	1.3	1	0	0	1	1	1	1	DEAD_2
AAA_22	PF13401.6	gi|336252936|ref|YP_004596043.1|	-	7.6e-05	23.0	0.0	0.00029	21.1	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
ResIII	PF04851.15	gi|336252936|ref|YP_004596043.1|	-	9e-05	22.5	0.0	0.034	14.2	0.0	2.7	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|336252936|ref|YP_004596043.1|	-	0.00033	20.4	0.2	0.72	9.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
DEAD	PF00270.29	gi|336252936|ref|YP_004596043.1|	-	0.00035	20.4	0.0	0.14	11.9	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_16	PF13191.6	gi|336252936|ref|YP_004596043.1|	-	0.0028	18.1	0.2	0.028	14.8	0.1	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
OrsD	PF12013.8	gi|336252936|ref|YP_004596043.1|	-	0.02	15.3	0.1	0.046	14.2	0.1	1.5	1	0	0	1	1	1	0	Orsellinic	acid/F9775	biosynthesis	cluster	protein	D
Mg_chelatase	PF01078.21	gi|336252936|ref|YP_004596043.1|	-	0.02	14.3	0.0	0.034	13.5	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DXP_redisom_C	PF08436.12	gi|336252936|ref|YP_004596043.1|	-	0.037	14.2	0.0	0.11	12.7	0.0	1.7	2	0	0	2	2	2	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal	domain
PhoH	PF02562.16	gi|336252936|ref|YP_004596043.1|	-	0.046	13.2	0.0	0.086	12.3	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
PRO8NT	PF08082.11	gi|336252936|ref|YP_004596043.1|	-	0.075	13.0	0.1	0.15	12.0	0.1	1.4	1	0	0	1	1	1	0	PRO8NT	(NUC069),	PrP8	N-terminal	domain
AAA_19	PF13245.6	gi|336252936|ref|YP_004596043.1|	-	0.1	13.0	0.0	0.26	11.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|336252936|ref|YP_004596043.1|	-	0.16	11.2	0.0	3.7	6.7	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
gpUL132	PF11359.8	gi|336252937|ref|YP_004596044.1|	-	0.11	12.1	0.1	0.11	12.1	0.1	1.0	1	0	0	1	1	1	0	Glycoprotein	UL132
Met_10	PF02475.16	gi|336252938|ref|YP_004596045.1|	-	8.9e-49	165.9	0.0	2.2e-47	161.4	0.0	2.1	2	0	0	2	2	2	1	Met-10+	like-protein
Methyltransf_25	PF13649.6	gi|336252938|ref|YP_004596045.1|	-	6.6e-05	23.5	0.0	0.00018	22.1	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|336252938|ref|YP_004596045.1|	-	0.00011	21.8	0.0	0.00016	21.3	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|336252938|ref|YP_004596045.1|	-	0.00043	19.9	0.0	0.0017	17.9	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	small	domain
tRNA_U5-meth_tr	PF05958.11	gi|336252938|ref|YP_004596045.1|	-	0.019	14.0	0.0	0.028	13.4	0.0	1.2	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
DNA_methylase	PF00145.17	gi|336252938|ref|YP_004596045.1|	-	0.023	14.1	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Trm5_N	PF18093.1	gi|336252938|ref|YP_004596045.1|	-	0.023	14.6	1.3	0.089	12.7	1.3	2.0	1	1	0	1	1	1	0	tRNA	methyltransferase	5	N-terminal	domain
PrmA	PF06325.13	gi|336252938|ref|YP_004596045.1|	-	0.056	12.8	0.0	0.096	12.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|336252938|ref|YP_004596045.1|	-	0.071	13.8	0.0	0.24	12.1	0.0	2.0	1	1	0	1	1	1	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336252938|ref|YP_004596045.1|	-	0.11	12.1	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
NMD3	PF04981.13	gi|336252939|ref|YP_004596046.1|	-	1.9e-64	217.4	0.1	2.4e-64	217.1	0.1	1.1	1	0	0	1	1	1	1	NMD3	family
Rpr2	PF04032.16	gi|336252939|ref|YP_004596046.1|	-	0.00046	20.4	0.4	0.043	14.1	0.0	3.1	3	0	0	3	3	3	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|336252939|ref|YP_004596046.1|	-	0.0036	17.3	5.9	0.17	11.9	3.8	3.0	2	1	0	2	2	2	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336252939|ref|YP_004596046.1|	-	0.0053	16.4	4.4	0.65	9.8	0.1	3.5	3	0	0	3	3	3	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336252939|ref|YP_004596046.1|	-	0.037	13.4	4.4	3.9	7.0	0.2	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
PknG_rubred	PF16919.5	gi|336252939|ref|YP_004596046.1|	-	0.039	14.1	5.3	0.21	11.8	0.7	3.0	2	1	1	3	3	3	0	Protein	kinase	G	rubredoxin	domain
FYVE	PF01363.21	gi|336252939|ref|YP_004596046.1|	-	0.054	13.6	1.7	5.3	7.2	1.0	2.9	2	1	0	2	2	2	0	FYVE	zinc	finger
DUF2703	PF10865.8	gi|336252939|ref|YP_004596046.1|	-	0.087	13.0	0.1	0.27	11.4	0.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2703)
NOB1_Zn_bind	PF08772.11	gi|336252939|ref|YP_004596046.1|	-	0.13	12.4	1.7	4.1	7.6	0.0	3.2	3	0	0	3	3	3	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf_UBZ	PF18439.1	gi|336252939|ref|YP_004596046.1|	-	0.22	11.2	6.5	2.4	7.8	0.1	3.4	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
GFA	PF04828.14	gi|336252939|ref|YP_004596046.1|	-	0.27	11.6	3.7	11	6.5	0.1	3.4	2	1	1	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
Nudix_N_2	PF14803.6	gi|336252939|ref|YP_004596046.1|	-	6.8	6.7	21.9	2.3	8.2	0.1	4.5	6	0	0	6	6	6	0	Nudix	N-terminal
UPF0547	PF10571.9	gi|336252939|ref|YP_004596046.1|	-	9.2	6.5	8.6	29	4.9	0.7	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Peptidase_M48	PF01435.18	gi|336252940|ref|YP_004596047.1|	-	2.3e-44	151.6	0.0	3.6e-44	150.9	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|336252940|ref|YP_004596047.1|	-	3.9e-10	39.4	0.3	1.2e-08	34.5	0.0	2.2	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|336252940|ref|YP_004596047.1|	-	0.013	15.3	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
DUF996	PF06195.13	gi|336252940|ref|YP_004596047.1|	-	0.023	15.0	0.5	0.023	15.0	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF996)
DUF4157	PF13699.6	gi|336252940|ref|YP_004596047.1|	-	0.084	13.1	0.1	0.19	12.0	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
Tetraspanin	PF00335.20	gi|336252941|ref|YP_004596048.1|	-	0.12	12.1	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Tetraspanin	family
SecE	PF00584.20	gi|336252941|ref|YP_004596048.1|	-	0.3	11.1	3.9	1.6	8.7	0.1	2.1	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
GRA6	PF05084.13	gi|336252942|ref|YP_004596049.1|	-	3.9	7.4	8.8	0.26	11.2	0.9	2.5	2	1	1	3	3	3	0	Granule	antigen	protein	(GRA6)
DNA_primase_lrg	PF04104.14	gi|336252943|ref|YP_004596050.1|	-	8.6e-34	117.1	0.0	1.4e-33	116.4	0.0	1.3	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
Abhydrolase_1	PF00561.20	gi|336252944|ref|YP_004596051.1|	-	2.1e-26	93.1	0.0	5.6e-24	85.2	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|336252944|ref|YP_004596051.1|	-	7.4e-22	79.0	7.8	8.8e-22	78.8	7.8	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|336252944|ref|YP_004596051.1|	-	6.9e-18	64.8	0.0	1.8e-17	63.4	0.0	1.5	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|336252944|ref|YP_004596051.1|	-	0.00017	21.7	0.0	0.00028	20.9	0.0	1.3	1	0	0	1	1	1	1	TAP-like	protein
Peptidase_S9	PF00326.21	gi|336252944|ref|YP_004596051.1|	-	0.0014	18.2	0.0	0.012	15.1	0.0	2.3	3	0	0	3	3	3	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.7	gi|336252944|ref|YP_004596051.1|	-	0.0016	18.2	0.0	0.72	9.6	0.0	2.2	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|336252944|ref|YP_004596051.1|	-	0.0088	15.6	0.0	0.079	12.5	0.0	2.0	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|336252944|ref|YP_004596051.1|	-	0.018	14.7	0.0	0.032	13.9	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF2048	PF09752.9	gi|336252944|ref|YP_004596051.1|	-	0.022	13.8	0.0	0.98	8.5	0.0	2.0	2	0	0	2	2	2	0	Abhydrolase	domain	containing	18
Patatin	PF01734.22	gi|336252944|ref|YP_004596051.1|	-	0.032	14.4	0.0	0.045	13.9	0.0	1.3	1	0	0	1	1	1	0	Patatin-like	phospholipase
UPF0227	PF05728.12	gi|336252944|ref|YP_004596051.1|	-	0.034	14.1	0.0	0.28	11.1	0.1	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0227)
Ndr	PF03096.14	gi|336252944|ref|YP_004596051.1|	-	0.11	11.2	0.0	0.16	10.6	0.0	1.2	1	0	0	1	1	1	0	Ndr	family
LIP	PF03583.14	gi|336252944|ref|YP_004596051.1|	-	0.16	11.2	0.2	14	4.9	0.2	2.2	2	0	0	2	2	2	0	Secretory	lipase
HalOD1	PF18545.1	gi|336252945|ref|YP_004596052.1|	-	2.4e-26	91.8	0.8	3.3e-26	91.4	0.8	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_10	PF04967.12	gi|336252946|ref|YP_004596053.1|	-	1e-15	57.2	0.0	1.5e-15	56.7	0.0	1.2	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252946|ref|YP_004596053.1|	-	0.0011	18.9	0.0	0.0013	18.6	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
PCNA_N	PF00705.18	gi|336252947|ref|YP_004596054.1|	-	7.4e-09	35.4	0.1	1.3e-08	34.6	0.1	1.4	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|336252947|ref|YP_004596054.1|	-	2.1e-05	24.7	0.0	6.4e-05	23.1	0.0	1.9	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.13	gi|336252947|ref|YP_004596054.1|	-	0.094	12.1	0.0	0.16	11.4	0.0	1.3	1	0	0	1	1	1	0	Rad9
PYRIN	PF02758.16	gi|336252948|ref|YP_004596055.1|	-	0.064	13.4	0.0	0.081	13.1	0.0	1.1	1	0	0	1	1	1	0	PAAD/DAPIN/Pyrin	domain
Usp	PF00582.26	gi|336252949|ref|YP_004596056.1|	-	1.7e-34	119.4	2.3	1.9e-34	119.2	2.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|336252949|ref|YP_004596056.1|	-	0.0045	17.2	0.7	0.0069	16.6	0.7	1.6	1	1	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
OmpH	PF03938.14	gi|336252949|ref|YP_004596056.1|	-	0.066	13.5	0.0	0.079	13.3	0.0	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
pPIWI_RE_Y	PF18156.1	gi|336252949|ref|YP_004596056.1|	-	0.13	12.7	1.3	2	8.9	1.2	2.6	1	1	1	2	2	2	0	pPIWI_RE	three-gene	island	domain	Y
UDG	PF03167.19	gi|336252950|ref|YP_004596057.1|	-	1.3e-38	132.4	0.0	1.7e-38	132.1	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
FtsJ	PF01728.19	gi|336252952|ref|YP_004596059.1|	-	6.3e-56	189.3	0.0	7.5e-56	189.0	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.20	gi|336252952|ref|YP_004596059.1|	-	3.3e-12	46.2	0.5	3.3e-12	46.2	0.5	1.8	2	0	0	2	2	2	1	TRAM	domain
Methyltransf_31	PF13847.6	gi|336252952|ref|YP_004596059.1|	-	4.7e-05	23.2	0.0	0.00028	20.7	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252952|ref|YP_004596059.1|	-	0.00032	21.4	0.0	0.00072	20.2	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336252952|ref|YP_004596059.1|	-	0.019	14.8	0.0	0.041	13.7	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|336252952|ref|YP_004596059.1|	-	0.033	14.0	0.0	0.29	10.9	0.0	2.1	2	1	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MaoC_dehydratas	PF01575.19	gi|336252952|ref|YP_004596059.1|	-	0.044	13.4	0.0	0.085	12.4	0.0	1.4	1	0	0	1	1	1	0	MaoC	like	domain
PrmA	PF06325.13	gi|336252952|ref|YP_004596059.1|	-	0.1	12.0	0.2	0.15	11.4	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
RHH_1	PF01402.21	gi|336252953|ref|YP_004596060.1|	-	0.00029	20.7	1.5	0.00074	19.4	0.1	2.1	1	1	1	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|336252953|ref|YP_004596060.1|	-	0.0043	17.2	0.0	0.0043	17.2	0.0	1.1	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
TatC	PF00902.18	gi|336252954|ref|YP_004596061.1|	-	5.9e-74	248.4	37.6	1.5e-41	142.5	14.7	2.6	3	0	0	3	3	3	2	Sec-independent	protein	translocase	protein	(TatC)
TatC	PF00902.18	gi|336252955|ref|YP_004596062.1|	-	4.3e-37	128.0	18.1	5.3e-37	127.7	18.1	1.1	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
AF-4	PF05110.13	gi|336252955|ref|YP_004596062.1|	-	0.02	13.0	15.0	0.025	12.7	15.0	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
IMUP	PF15761.5	gi|336252955|ref|YP_004596062.1|	-	1	10.1	11.6	1.8	9.3	11.6	1.3	1	0	0	1	1	1	0	Immortalisation	up-regulated	protein
Molybdopterin	PF00384.22	gi|336252956|ref|YP_004596063.1|	-	3.7e-50	171.2	0.0	4.6e-50	170.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|336252956|ref|YP_004596063.1|	-	2.5e-15	56.5	0.1	7.1e-14	51.8	0.1	2.5	1	1	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|336252956|ref|YP_004596063.1|	-	3.5e-06	26.9	2.1	9.5e-06	25.5	2.1	1.8	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
MFS_1	PF07690.16	gi|336252957|ref|YP_004596064.1|	-	2.9e-26	92.2	69.8	5.6e-19	68.3	35.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PapC_C	PF13953.6	gi|336252957|ref|YP_004596064.1|	-	0.063	13.1	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	PapC	C-terminal	domain
NIR_SIR	PF01077.22	gi|336252958|ref|YP_004596065.1|	-	6.6e-47	159.0	0.1	3.4e-31	107.9	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|336252958|ref|YP_004596065.1|	-	2.4e-35	120.2	0.1	2.7e-16	59.2	0.0	3.2	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DGC	PF08859.11	gi|336252958|ref|YP_004596065.1|	-	0.073	13.2	0.5	0.98	9.6	0.0	2.4	2	0	0	2	2	2	0	DGC	domain
Asn_synthase	PF00733.21	gi|336252961|ref|YP_004596068.1|	-	4.1e-11	43.2	1.5	4.8e-11	42.9	1.5	1.3	1	1	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.16	gi|336252961|ref|YP_004596068.1|	-	4.6e-09	35.5	0.0	4.2e-06	25.8	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|336252961|ref|YP_004596068.1|	-	1.7e-08	33.9	0.0	2.9e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|336252961|ref|YP_004596068.1|	-	8.2e-06	25.5	0.0	4.5e-05	23.0	0.0	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|336252961|ref|YP_004596068.1|	-	0.0011	18.7	0.0	0.0026	17.5	0.0	1.6	1	0	0	1	1	1	1	PP-loop	family
QueH	PF02677.14	gi|336252961|ref|YP_004596068.1|	-	0.0092	16.1	0.1	0.016	15.3	0.1	1.4	1	0	0	1	1	1	1	Epoxyqueuosine	reductase	QueH
Arginosuc_synth	PF00764.19	gi|336252961|ref|YP_004596068.1|	-	0.012	14.9	0.1	0.021	14.2	0.1	1.3	1	0	0	1	1	1	0	Arginosuccinate	synthase
PAPS_reduct	PF01507.19	gi|336252961|ref|YP_004596068.1|	-	0.12	12.4	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
GFO_IDH_MocA	PF01408.22	gi|336252962|ref|YP_004596069.1|	-	7e-25	88.2	0.0	2.5e-24	86.4	0.0	2.0	3	0	0	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.17	gi|336252962|ref|YP_004596069.1|	-	0.036	14.7	0.0	0.077	13.6	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
ThuA	PF06283.11	gi|336252963|ref|YP_004596070.1|	-	2.7e-31	109.4	0.0	8.4e-31	107.8	0.0	1.7	1	1	0	1	1	1	1	Trehalose	utilisation
MarR_2	PF12802.7	gi|336252965|ref|YP_004596072.1|	-	0.013	15.3	0.0	0.042	13.7	0.0	1.8	2	0	0	2	2	2	0	MarR	family
DUF505	PF04458.12	gi|336252965|ref|YP_004596072.1|	-	0.025	13.0	0.0	0.031	12.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_IclR	PF09339.10	gi|336252965|ref|YP_004596072.1|	-	0.056	13.3	0.0	0.1	12.4	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF4148	PF13663.6	gi|336252965|ref|YP_004596072.1|	-	0.11	12.7	0.1	0.44	10.8	0.1	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4148)
HTH_Crp_2	PF13545.6	gi|336252965|ref|YP_004596072.1|	-	0.11	12.5	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF326	PF03860.16	gi|336252967|ref|YP_004596074.1|	-	3.3e-07	30.1	50.7	0.0013	18.6	4.1	4.9	4	1	1	5	5	5	4	Domain	of	Unknown	Function	(DUF326)
HDOD	PF08668.12	gi|336252967|ref|YP_004596074.1|	-	0.086	12.3	1.5	0.4	10.1	1.1	1.9	1	1	1	2	2	2	0	HDOD	domain
GAT	PF03127.14	gi|336252967|ref|YP_004596074.1|	-	0.1	12.9	0.1	0.1	12.9	0.1	2.0	2	0	0	2	2	2	0	GAT	domain
SPW	PF03779.14	gi|336252968|ref|YP_004596075.1|	-	3.2e-10	39.4	24.7	1.3e-05	24.7	8.9	2.3	2	0	0	2	2	2	2	SPW	repeat
ThrE	PF06738.12	gi|336252968|ref|YP_004596075.1|	-	0.04	13.3	3.4	0.058	12.7	3.1	1.4	1	1	0	1	1	1	0	Putative	threonine/serine	exporter
Glyco_hydro_15	PF00723.21	gi|336252969|ref|YP_004596076.1|	-	8.3e-49	166.6	0.0	1.1e-43	149.7	0.0	2.1	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
TPR_4	PF07721.14	gi|336252969|ref|YP_004596076.1|	-	0.0018	18.7	0.6	0.051	14.2	0.2	3.4	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|336252969|ref|YP_004596076.1|	-	0.047	14.0	0.1	7	7.0	0.0	2.7	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|336252969|ref|YP_004596076.1|	-	0.11	12.6	0.7	8.5	6.8	0.1	2.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|336252969|ref|YP_004596076.1|	-	0.79	9.9	3.3	4.9	7.4	0.1	3.5	4	0	0	4	4	4	0	Tetratricopeptide	repeat
VKOR	PF07884.14	gi|336252970|ref|YP_004596077.1|	-	9.1e-15	54.9	6.7	9.1e-15	54.9	6.7	3.1	3	2	0	3	3	3	1	Vitamin	K	epoxide	reductase	family
SPW	PF03779.14	gi|336252970|ref|YP_004596077.1|	-	3.1e-05	23.5	48.7	0.0015	18.0	6.7	5.3	5	0	0	5	5	5	4	SPW	repeat
Holin_SPP1	PF04688.13	gi|336252970|ref|YP_004596077.1|	-	0.53	10.5	3.1	4.1	7.6	0.1	2.8	2	0	0	2	2	2	0	SPP1	phage	holin
adh_short	PF00106.25	gi|336252971|ref|YP_004596078.1|	-	2.9e-43	147.6	0.2	3.9e-43	147.2	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336252971|ref|YP_004596078.1|	-	1.4e-30	106.6	0.1	1.7e-30	106.3	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|336252971|ref|YP_004596078.1|	-	7.8e-15	55.2	0.2	1.1e-14	54.8	0.2	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336252971|ref|YP_004596078.1|	-	0.14	11.6	0.3	0.39	10.1	0.3	1.8	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
DUF892	PF05974.12	gi|336252973|ref|YP_004596080.1|	-	4e-26	91.9	1.8	4.9e-26	91.6	1.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
SlyX	PF04102.12	gi|336252973|ref|YP_004596080.1|	-	0.04	14.5	1.3	0.87	10.3	0.2	2.7	2	1	0	2	2	2	0	SlyX
GDH_N	PF12466.8	gi|336252973|ref|YP_004596080.1|	-	0.041	14.1	0.0	0.06	13.6	0.0	1.3	1	0	0	1	1	1	0	Glutamate	dehydrogenase	N	terminal
DUF892	PF05974.12	gi|336252974|ref|YP_004596081.1|	-	1.2e-15	57.8	0.7	1.4e-14	54.4	0.7	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
DASH_Dad3	PF08656.10	gi|336252974|ref|YP_004596081.1|	-	0.032	14.3	0.5	0.088	12.9	0.3	1.9	2	0	0	2	2	2	0	DASH	complex	subunit	Dad3
MOSC_N	PF03476.16	gi|336252976|ref|YP_004596083.1|	-	3.2e-14	52.8	0.0	5.1e-14	52.2	0.0	1.5	1	1	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
MOSC	PF03473.17	gi|336252976|ref|YP_004596083.1|	-	5e-07	29.8	0.0	7.3e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	MOSC	domain
DUF368	PF04018.13	gi|336252978|ref|YP_004596085.1|	-	6.2e-57	193.0	19.3	7.8e-57	192.7	19.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
MutS_V	PF00488.21	gi|336252979|ref|YP_004596086.1|	-	3.1e-09	37.1	0.6	5e-09	36.5	0.1	1.6	2	0	0	2	2	2	1	MutS	domain	V
HHH_5	PF14520.6	gi|336252979|ref|YP_004596086.1|	-	6.7e-08	33.0	5.3	1.1e-07	32.3	0.4	3.1	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|336252979|ref|YP_004596086.1|	-	1.8e-05	24.4	0.8	0.0013	18.5	0.1	3.2	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
AAA_21	PF13304.6	gi|336252979|ref|YP_004596086.1|	-	0.017	14.9	0.0	0.32	10.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Transposase_20	PF02371.16	gi|336252979|ref|YP_004596086.1|	-	0.13	12.6	0.0	0.51	10.7	0.0	2.0	2	0	0	2	2	2	0	Transposase	IS116/IS110/IS902	family
AAA	PF00004.29	gi|336252979|ref|YP_004596086.1|	-	0.26	11.7	0.9	0.62	10.5	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF1059	PF06348.11	gi|336252980|ref|YP_004596087.1|	-	1.9e-07	31.2	0.1	2.7e-07	30.7	0.1	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
GFO_IDH_MocA	PF01408.22	gi|336252981|ref|YP_004596088.1|	-	4e-22	79.3	0.0	7.8e-22	78.4	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.16	gi|336252981|ref|YP_004596088.1|	-	2.2e-06	28.3	0.1	4.9e-06	27.2	0.1	1.5	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336252981|ref|YP_004596088.1|	-	0.029	13.7	0.0	0.063	12.6	0.0	1.7	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|336252981|ref|YP_004596088.1|	-	0.064	13.5	0.2	0.18	12.1	0.2	1.8	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
GFO_IDH_MocA_C	PF02894.17	gi|336252981|ref|YP_004596088.1|	-	0.079	13.0	0.0	0.18	11.8	0.0	1.7	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Cpn60_TCP1	PF00118.24	gi|336252982|ref|YP_004596089.1|	-	2.7e-133	445.2	0.4	3.2e-133	444.9	0.4	1.1	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF3509	PF12021.8	gi|336252982|ref|YP_004596089.1|	-	0.025	14.3	0.0	0.069	12.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3509)
FmdA_AmdA	PF03069.15	gi|336252983|ref|YP_004596090.1|	-	5.4e-156	519.1	0.0	6.2e-156	518.9	0.0	1.0	1	0	0	1	1	1	1	Acetamidase/Formamidase	family
AAA_16	PF13191.6	gi|336252984|ref|YP_004596091.1|	-	4.7e-14	53.1	0.1	1.2e-11	45.3	0.0	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336252984|ref|YP_004596091.1|	-	4.9e-10	39.8	0.0	1e-09	38.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|336252984|ref|YP_004596091.1|	-	9.3e-06	26.1	0.0	2.4e-05	24.8	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|336252984|ref|YP_004596091.1|	-	1.3e-05	24.8	0.0	0.00039	20.0	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
MarR_2	PF12802.7	gi|336252984|ref|YP_004596091.1|	-	0.00074	19.3	0.0	0.0025	17.6	0.0	1.9	1	1	0	1	1	1	1	MarR	family
AAA_11	PF13086.6	gi|336252984|ref|YP_004596091.1|	-	0.00084	19.2	0.0	0.0016	18.3	0.0	1.5	2	0	0	2	2	1	1	AAA	domain
Cdc6_C	PF09079.11	gi|336252984|ref|YP_004596091.1|	-	0.0009	19.2	0.0	0.0032	17.4	0.0	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_35	PF14516.6	gi|336252984|ref|YP_004596091.1|	-	0.001	18.0	0.0	0.037	12.9	0.0	2.3	2	0	0	2	2	2	1	AAA-like	domain
AAA_33	PF13671.6	gi|336252984|ref|YP_004596091.1|	-	0.0013	18.9	0.0	0.0031	17.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|336252984|ref|YP_004596091.1|	-	0.0016	17.6	0.0	0.0025	16.9	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.17	gi|336252984|ref|YP_004596091.1|	-	0.002	17.9	0.0	1.3	8.7	0.0	2.6	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Viral_helicase1	PF01443.18	gi|336252984|ref|YP_004596091.1|	-	0.0029	17.4	0.0	0.0044	16.8	0.0	1.3	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
AAA_32	PF13654.6	gi|336252984|ref|YP_004596091.1|	-	0.0039	16.0	0.0	1.1	7.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
TIP49_C	PF17856.1	gi|336252984|ref|YP_004596091.1|	-	0.004	17.2	0.0	0.01	16.0	0.0	1.7	1	0	0	1	1	1	1	TIP49	AAA-lid	domain
AAA_30	PF13604.6	gi|336252984|ref|YP_004596091.1|	-	0.0051	16.6	0.2	0.014	15.1	0.0	1.8	3	0	0	3	3	1	1	AAA	domain
HTH_27	PF13463.6	gi|336252984|ref|YP_004596091.1|	-	0.0059	17.1	0.1	0.014	15.8	0.1	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF815	PF05673.13	gi|336252984|ref|YP_004596091.1|	-	0.0062	15.7	0.0	0.029	13.5	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
NTPase_1	PF03266.15	gi|336252984|ref|YP_004596091.1|	-	0.0065	16.4	0.0	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	NTPase
Sigma54_activat	PF00158.26	gi|336252984|ref|YP_004596091.1|	-	0.0066	16.2	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|336252984|ref|YP_004596091.1|	-	0.0074	16.2	0.0	0.018	14.9	0.0	1.7	1	1	0	1	1	1	1	NACHT	domain
AAA_14	PF13173.6	gi|336252984|ref|YP_004596091.1|	-	0.008	16.2	0.1	0.092	12.8	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|336252984|ref|YP_004596091.1|	-	0.0092	16.5	0.0	0.023	15.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|336252984|ref|YP_004596091.1|	-	0.011	15.2	0.0	0.023	14.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	TniB	protein
AAA_19	PF13245.6	gi|336252984|ref|YP_004596091.1|	-	0.016	15.5	0.0	0.036	14.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|336252984|ref|YP_004596091.1|	-	0.016	14.5	0.0	0.031	13.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
Bac_DnaA	PF00308.18	gi|336252984|ref|YP_004596091.1|	-	0.027	14.3	0.0	0.099	12.5	0.0	1.8	2	0	0	2	2	2	0	Bacterial	dnaA	protein
DUF2075	PF09848.9	gi|336252984|ref|YP_004596091.1|	-	0.03	13.6	0.0	0.047	12.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.22	gi|336252984|ref|YP_004596091.1|	-	0.034	14.6	0.0	0.075	13.4	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Rad17	PF03215.15	gi|336252984|ref|YP_004596091.1|	-	0.05	13.5	0.0	0.08	12.9	0.0	1.5	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|336252984|ref|YP_004596091.1|	-	0.063	13.5	0.0	0.17	12.1	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_6	PF12774.7	gi|336252984|ref|YP_004596091.1|	-	0.075	12.0	0.0	0.15	11.0	0.0	1.4	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
AAA_24	PF13479.6	gi|336252984|ref|YP_004596091.1|	-	0.081	12.6	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RuvB_N	PF05496.12	gi|336252984|ref|YP_004596091.1|	-	0.099	12.4	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_17	PF13207.6	gi|336252984|ref|YP_004596091.1|	-	0.1	13.0	0.1	0.63	10.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|336252984|ref|YP_004596091.1|	-	0.12	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Septin	PF00735.18	gi|336252984|ref|YP_004596091.1|	-	0.13	11.6	0.0	0.2	10.9	0.0	1.2	1	0	0	1	1	1	0	Septin
SRP54	PF00448.22	gi|336252984|ref|YP_004596091.1|	-	0.14	11.8	0.0	0.37	10.4	0.0	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TrwB_AAD_bind	PF10412.9	gi|336252984|ref|YP_004596091.1|	-	0.18	10.7	0.0	0.28	10.0	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
KAP_NTPase	PF07693.14	gi|336252984|ref|YP_004596091.1|	-	0.19	11.0	0.0	2.5	7.3	0.0	2.1	1	1	1	2	2	2	0	KAP	family	P-loop	domain
DUF2267	PF10025.9	gi|336252985|ref|YP_004596092.1|	-	2.3e-22	79.5	4.2	2.9e-22	79.2	4.2	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
DUF2267	PF10025.9	gi|336252986|ref|YP_004596093.1|	-	8.4e-23	81.0	7.0	1.1e-22	80.6	7.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
PSD1	PF07587.11	gi|336252986|ref|YP_004596093.1|	-	0.051	13.1	0.1	0.058	12.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1553)
CHDCT2	PF08074.11	gi|336252986|ref|YP_004596093.1|	-	0.12	12.6	0.2	1.3	9.1	0.1	2.0	1	1	1	2	2	2	0	CHDCT2	(NUC038)	domain
MgtE_N	PF03448.17	gi|336252986|ref|YP_004596093.1|	-	0.18	12.4	6.1	4.1	8.1	0.1	2.8	2	1	0	2	2	2	0	MgtE	intracellular	N	domain
TruB_C	PF09142.11	gi|336252986|ref|YP_004596093.1|	-	0.64	9.8	4.2	1.7	8.4	0.3	2.4	2	0	0	2	2	2	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Halo_GVPC	PF05465.13	gi|336252987|ref|YP_004596094.1|	-	0.0014	18.8	1.9	0.0014	18.8	1.9	2.0	2	0	0	2	2	2	1	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
HBM	PF16591.5	gi|336252987|ref|YP_004596094.1|	-	0.0026	17.2	5.6	0.11	11.9	0.2	2.0	1	1	1	2	2	2	2	Helical	bimodular	sensor	domain
Apolipoprotein	PF01442.18	gi|336252987|ref|YP_004596094.1|	-	0.015	15.2	7.9	0.026	14.4	7.9	1.4	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Cytochrom_B562	PF07361.11	gi|336252987|ref|YP_004596094.1|	-	0.018	15.7	1.0	0.046	14.4	1.0	1.6	1	1	0	1	1	1	0	Cytochrome	b562
DUF883	PF05957.13	gi|336252987|ref|YP_004596094.1|	-	0.033	14.8	7.5	0.24	12.0	1.6	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
SCAB_CC	PF16712.5	gi|336252987|ref|YP_004596094.1|	-	0.042	13.7	0.5	0.095	12.5	0.0	1.7	2	0	0	2	2	2	0	Coiled-coil	regions	of	plant-specific	actin-binding	protein
DUF3450	PF11932.8	gi|336252987|ref|YP_004596094.1|	-	0.063	12.6	2.5	0.079	12.3	2.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
PBP-Tp47_c	PF14888.6	gi|336252987|ref|YP_004596094.1|	-	0.069	13.1	0.1	0.077	12.9	0.1	1.2	1	0	0	1	1	1	0	Penicillin-binding	protein	Tp47	domain	C
YtxH	PF12732.7	gi|336252987|ref|YP_004596094.1|	-	0.097	13.2	5.7	5.9	7.5	5.7	2.1	1	1	0	1	1	1	0	YtxH-like	protein
DUF2564	PF10819.8	gi|336252987|ref|YP_004596094.1|	-	0.24	11.8	4.6	3.9	7.9	0.1	2.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2564)
MT0933_antitox	PF14013.6	gi|336252987|ref|YP_004596094.1|	-	0.27	11.6	5.9	1	9.8	0.1	2.9	2	1	1	3	3	3	0	MT0933-like	antitoxin	protein
CorA	PF01544.18	gi|336252987|ref|YP_004596094.1|	-	0.8	9.0	6.9	0.86	8.9	6.9	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF4397	PF14344.6	gi|336252988|ref|YP_004596095.1|	-	6.1e-42	143.2	0.5	5.3e-20	72.4	0.0	2.2	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4397)
TAT_signal	PF10518.9	gi|336252988|ref|YP_004596095.1|	-	0.022	14.6	3.6	0.046	13.6	3.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
AlgF	PF11182.8	gi|336252988|ref|YP_004596095.1|	-	0.049	13.4	0.0	0.29	10.9	0.0	2.0	2	0	0	2	2	2	0	Alginate	O-acetyl	transferase	AlgF
DUF4493	PF14900.6	gi|336252988|ref|YP_004596095.1|	-	0.12	12.2	1.7	1.4	8.8	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4493)
UvrB_inter	PF17757.1	gi|336252989|ref|YP_004596096.1|	-	8.8e-32	109.2	0.0	3.5e-31	107.2	0.0	2.1	1	0	0	1	1	1	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|336252989|ref|YP_004596096.1|	-	1.2e-18	66.6	0.1	2.9e-18	65.4	0.1	1.7	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|336252989|ref|YP_004596096.1|	-	6.1e-17	62.0	0.1	1.5e-16	60.7	0.1	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.19	gi|336252989|ref|YP_004596096.1|	-	1.4e-09	37.4	6.5	1.4e-09	37.4	6.5	2.9	3	0	0	3	3	3	1	UvrB/uvrC	motif
ResIII	PF04851.15	gi|336252989|ref|YP_004596096.1|	-	7.6e-09	35.8	0.0	5.8e-08	32.9	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|336252989|ref|YP_004596096.1|	-	0.001	18.9	0.1	0.009	15.8	0.0	2.6	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
AAA_19	PF13245.6	gi|336252989|ref|YP_004596096.1|	-	0.0087	16.4	0.2	6.8	7.0	0.0	2.9	3	1	0	3	3	3	2	AAA	domain
AAA_30	PF13604.6	gi|336252989|ref|YP_004596096.1|	-	0.01	15.5	0.0	0.24	11.1	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
UB2H	PF14814.6	gi|336252989|ref|YP_004596096.1|	-	0.013	15.5	0.1	0.039	14.0	0.0	1.9	2	0	0	2	2	2	0	Bifunctional	transglycosylase	second	domain
DUF87	PF01935.17	gi|336252989|ref|YP_004596096.1|	-	0.032	14.3	0.1	0.032	14.3	0.1	2.9	4	0	0	4	4	4	0	Helicase	HerA,	central	domain
AAA	PF00004.29	gi|336252989|ref|YP_004596096.1|	-	0.3	11.5	1.0	3.2	8.2	0.0	3.2	5	0	0	5	5	5	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cofilin_ADF	PF00241.20	gi|336252989|ref|YP_004596096.1|	-	0.4	10.5	2.2	0.49	10.2	0.2	2.2	2	0	0	2	2	2	0	Cofilin/tropomyosin-type	actin-binding	protein
EF-hand_5	PF13202.6	gi|336252990|ref|YP_004596097.1|	-	0.013	15.0	0.3	0.038	13.5	0.3	1.9	1	0	0	1	1	1	0	EF	hand
PapC_N	PF13954.6	gi|336252990|ref|YP_004596097.1|	-	0.019	15.0	0.1	0.039	14.0	0.0	1.6	2	0	0	2	2	2	0	PapC	N-terminal	domain
ArsP_2	PF11449.8	gi|336252991|ref|YP_004596098.1|	-	2.2e-134	448.2	14.2	2.5e-134	448.0	14.2	1.0	1	0	0	1	1	1	1	Putative,	10TM	heavy-metal	exporter
CCB1	PF12046.8	gi|336252991|ref|YP_004596098.1|	-	3.3	7.0	6.5	0.26	10.6	1.2	1.9	2	0	0	2	2	2	0	Cofactor	assembly	of	complex	C	subunit	B
Acetyltransf_10	PF13673.7	gi|336252992|ref|YP_004596099.1|	-	9e-16	58.0	0.0	1.1e-15	57.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336252992|ref|YP_004596099.1|	-	3.3e-14	53.1	0.0	3.9e-14	52.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336252992|ref|YP_004596099.1|	-	2.2e-13	50.4	0.0	3.3e-13	49.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336252992|ref|YP_004596099.1|	-	2.6e-07	31.4	0.1	3.1e-07	31.1	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336252992|ref|YP_004596099.1|	-	2.2e-06	27.5	0.0	3.3e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|336252992|ref|YP_004596099.1|	-	7.2e-06	26.2	0.0	9.4e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336252992|ref|YP_004596099.1|	-	9.8e-05	22.4	0.1	0.0049	17.0	0.1	2.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|336252992|ref|YP_004596099.1|	-	0.00083	19.5	0.5	0.0012	19.1	0.5	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF2156	PF09924.9	gi|336252992|ref|YP_004596099.1|	-	0.044	12.8	0.1	0.055	12.5	0.1	1.3	1	1	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2156)
SUI1	PF01253.22	gi|336252993|ref|YP_004596100.1|	-	1.2e-17	64.2	0.0	1.8e-17	63.6	0.0	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|336252993|ref|YP_004596100.1|	-	0.00093	19.5	0.0	0.0015	18.8	0.0	1.5	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
HEM4	PF02602.15	gi|336252993|ref|YP_004596100.1|	-	0.18	11.1	0.0	0.33	10.3	0.0	1.4	1	1	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
DUF192	PF02643.15	gi|336252994|ref|YP_004596101.1|	-	3.7e-25	87.9	0.0	4.8e-25	87.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
GOLD_2	PF13897.6	gi|336252994|ref|YP_004596101.1|	-	0.56	10.7	7.3	9.4	6.7	0.0	2.7	2	1	1	3	3	3	0	Golgi-dynamics	membrane-trafficking
BUD22	PF09073.10	gi|336252994|ref|YP_004596101.1|	-	2.5	7.3	9.3	2.6	7.3	9.3	1.1	1	0	0	1	1	1	0	BUD22
Nop14	PF04147.12	gi|336252994|ref|YP_004596101.1|	-	3.2	5.8	11.7	3.8	5.6	11.7	1.0	1	0	0	1	1	1	0	Nop14-like	family
UvrC_HhH_N	PF08459.11	gi|336252995|ref|YP_004596102.1|	-	1.2e-41	142.2	0.0	2.5e-41	141.2	0.0	1.5	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH_5	PF14520.6	gi|336252995|ref|YP_004596102.1|	-	8.6e-13	48.7	0.1	2.7e-12	47.1	0.1	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|336252995|ref|YP_004596102.1|	-	9.2e-12	44.2	0.2	8.4e-09	34.9	0.1	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|336252995|ref|YP_004596102.1|	-	1e-09	38.3	0.0	3.2e-09	36.8	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
UVR	PF02151.19	gi|336252995|ref|YP_004596102.1|	-	2.2e-09	36.7	2.3	5.4e-09	35.5	2.3	1.7	1	0	0	1	1	1	1	UvrB/uvrC	motif
GIY-YIG	PF01541.24	gi|336252995|ref|YP_004596102.1|	-	5.7e-09	36.1	0.0	1.1e-08	35.3	0.0	1.5	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
5_3_exonuc	PF01367.20	gi|336252995|ref|YP_004596102.1|	-	0.0012	19.4	0.1	0.65	10.6	0.0	3.0	2	1	1	3	3	3	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_3	PF12836.7	gi|336252995|ref|YP_004596102.1|	-	0.0023	18.2	0.0	0.019	15.2	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
FbpA	PF05833.11	gi|336252995|ref|YP_004596102.1|	-	0.013	14.2	0.0	0.021	13.6	0.0	1.3	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
IMS_HHH	PF11798.8	gi|336252995|ref|YP_004596102.1|	-	0.041	14.2	0.1	0.4	11.1	0.0	2.4	2	0	0	2	2	2	0	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|336252995|ref|YP_004596102.1|	-	0.06	13.7	0.0	0.49	10.8	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
ABC_tran	PF00005.27	gi|336252998|ref|YP_004596105.1|	-	9.2e-29	100.7	0.0	1.6e-28	99.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252998|ref|YP_004596105.1|	-	6.2e-10	39.4	0.1	8.7e-06	25.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336252998|ref|YP_004596105.1|	-	2.1e-09	37.9	0.0	7.1e-09	36.3	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|336252998|ref|YP_004596105.1|	-	6.5e-06	26.0	0.0	1.1e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|336252998|ref|YP_004596105.1|	-	0.0021	17.1	0.0	0.0044	16.1	0.0	1.4	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SMC_N	PF02463.19	gi|336252998|ref|YP_004596105.1|	-	0.003	17.0	0.0	0.84	9.0	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|336252998|ref|YP_004596105.1|	-	0.0046	17.5	0.1	0.0082	16.7	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336252998|ref|YP_004596105.1|	-	0.0095	15.8	0.0	0.016	15.2	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|336252998|ref|YP_004596105.1|	-	0.026	14.3	0.0	0.052	13.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336252998|ref|YP_004596105.1|	-	0.047	14.1	0.1	0.086	13.2	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|336252998|ref|YP_004596105.1|	-	0.066	12.8	0.0	0.18	11.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|336252999|ref|YP_004596106.1|	-	9.6e-57	192.5	16.3	1.2e-56	192.2	16.3	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336252999|ref|YP_004596106.1|	-	4.1e-08	32.7	18.1	4.1e-08	32.7	18.1	2.1	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|336252999|ref|YP_004596106.1|	-	3.5e-07	30.4	12.3	3.5e-07	30.4	12.3	1.9	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|336252999|ref|YP_004596106.1|	-	1.2e-06	28.2	14.1	1.2e-06	28.2	14.1	2.4	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336252999|ref|YP_004596106.1|	-	0.00039	19.9	14.8	0.00039	19.9	14.8	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
Thymidylate_kin	PF02223.17	gi|336252999|ref|YP_004596106.1|	-	0.14	11.8	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	Thymidylate	kinase
DNA_ligase_aden	PF01653.18	gi|336253000|ref|YP_004596107.1|	-	2.6e-107	358.6	0.0	4e-107	358.0	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.16	gi|336253000|ref|YP_004596107.1|	-	3.9e-30	103.6	2.9	3.9e-30	103.6	2.9	2.1	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.7	gi|336253000|ref|YP_004596107.1|	-	2.6e-20	72.3	0.5	2.7e-19	69.0	0.1	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|336253000|ref|YP_004596107.1|	-	3.1e-16	59.7	0.0	3e-07	31.0	0.1	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
BRCT	PF00533.26	gi|336253000|ref|YP_004596107.1|	-	4.2e-13	49.5	0.0	7.8e-13	48.6	0.0	1.5	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
DNA_ligase_ZBD	PF03119.16	gi|336253000|ref|YP_004596107.1|	-	1.7e-05	24.7	1.8	1.7e-05	24.7	1.8	3.0	3	0	0	3	3	3	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HHH	PF00633.23	gi|336253000|ref|YP_004596107.1|	-	0.00042	20.0	0.3	2.7	8.0	0.0	4.4	4	0	0	4	4	4	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.20	gi|336253000|ref|YP_004596107.1|	-	0.011	16.3	0.0	0.082	13.5	0.0	2.4	2	1	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_8	PF14716.6	gi|336253000|ref|YP_004596107.1|	-	0.014	15.7	0.0	13	6.2	0.0	3.6	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
E1-E2_ATPase	PF00122.20	gi|336253000|ref|YP_004596107.1|	-	0.069	12.7	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	E1-E2	ATPase
YebG	PF07130.12	gi|336253000|ref|YP_004596107.1|	-	0.17	11.8	0.7	4	7.3	0.3	2.9	3	0	0	3	3	3	0	YebG	protein
Fer2	PF00111.27	gi|336253001|ref|YP_004596108.1|	-	3e-11	43.1	0.5	1.7e-10	40.7	0.5	1.9	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
SBP56	PF05694.11	gi|336253002|ref|YP_004596109.1|	-	1.3e-197	657.2	0.1	1.5e-197	657.0	0.1	1.0	1	0	0	1	1	1	1	56kDa	selenium	binding	protein	(SBP56)
Lactonase	PF10282.9	gi|336253002|ref|YP_004596109.1|	-	0.036	13.3	0.0	0.19	11.0	0.0	2.0	2	1	0	2	2	2	0	Lactonase,	7-bladed	beta-propeller
Fer2	PF00111.27	gi|336253003|ref|YP_004596110.1|	-	3.5e-12	46.1	1.1	3e-11	43.1	1.1	2.1	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|336253003|ref|YP_004596110.1|	-	0.016	15.2	0.1	0.037	14.1	0.1	1.6	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Na_H_antiporter	PF03553.14	gi|336253004|ref|YP_004596111.1|	-	1.3e-59	201.9	37.3	1.6e-52	178.6	19.4	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Gate	PF07670.14	gi|336253004|ref|YP_004596111.1|	-	0.062	13.6	10.7	0.16	12.3	1.0	3.3	2	1	0	2	2	2	0	Nucleoside	recognition
RIO1	PF01163.22	gi|336253005|ref|YP_004596112.1|	-	4.8e-60	202.4	0.1	2.6e-59	200.0	0.0	1.8	2	0	0	2	2	2	1	RIO1	family
APH	PF01636.23	gi|336253005|ref|YP_004596112.1|	-	8.4e-11	42.2	0.3	6.1e-05	23.1	0.0	2.7	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|336253005|ref|YP_004596112.1|	-	3.4e-05	23.3	0.0	0.00021	20.7	0.0	1.9	2	0	0	2	2	2	1	Protein	kinase	domain
Kdo	PF06293.14	gi|336253005|ref|YP_004596112.1|	-	0.00029	20.2	0.2	0.0041	16.5	0.0	2.4	2	1	0	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase_fungal	PF17667.1	gi|336253005|ref|YP_004596112.1|	-	0.008	15.0	0.0	0.013	14.3	0.0	1.2	1	0	0	1	1	1	1	Fungal	protein	kinase
VQ	PF05678.14	gi|336253005|ref|YP_004596112.1|	-	0.05	13.1	0.1	0.091	12.3	0.1	1.5	1	0	0	1	1	1	0	VQ	motif
5_nucleotid_C	PF02872.18	gi|336253006|ref|YP_004596113.1|	-	6.8e-47	159.6	0.0	1.2e-46	158.9	0.0	1.4	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
CoA_binding_2	PF13380.6	gi|336253006|ref|YP_004596113.1|	-	0.057	13.9	1.2	0.11	13.1	0.4	1.8	2	0	0	2	2	2	0	CoA	binding	domain
tRNA-synt_1b	PF00579.25	gi|336253007|ref|YP_004596114.1|	-	7.9e-22	77.9	0.0	3e-21	76.0	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Metallophos_2	PF12850.7	gi|336253008|ref|YP_004596115.1|	-	3.3e-31	108.7	0.5	3.8e-31	108.5	0.5	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336253008|ref|YP_004596115.1|	-	0.00016	22.2	4.1	0.00048	20.7	4.1	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
KH_1	PF00013.29	gi|336253009|ref|YP_004596116.1|	-	9e-14	51.1	0.7	1.8e-07	30.8	0.1	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|336253009|ref|YP_004596116.1|	-	3.2e-05	23.7	2.2	0.0046	16.8	0.1	2.5	2	1	0	2	2	2	2	KH	domain
KH_8	PF17903.1	gi|336253009|ref|YP_004596116.1|	-	0.00014	21.9	0.0	0.00022	21.3	0.0	1.3	1	0	0	1	1	1	1	Krr1	KH1	domain
KH_4	PF13083.6	gi|336253009|ref|YP_004596116.1|	-	0.0081	16.0	3.0	1.8	8.5	0.3	3.1	2	1	1	3	3	3	2	KH	domain
Cpn60_TCP1	PF00118.24	gi|336253010|ref|YP_004596117.1|	-	1e-175	585.1	15.0	1.2e-175	584.9	15.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
P-II	PF00543.22	gi|336253010|ref|YP_004596117.1|	-	0.37	11.4	3.7	8.6	7.0	0.0	3.6	3	0	0	3	3	3	0	Nitrogen	regulatory	protein	P-II
OCD_Mu_crystall	PF02423.15	gi|336253011|ref|YP_004596118.1|	-	3.6e-93	312.0	1.4	4.1e-93	311.8	1.4	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|336253011|ref|YP_004596118.1|	-	0.038	14.0	0.0	0.072	13.1	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|336253011|ref|YP_004596118.1|	-	0.053	14.3	0.2	0.13	13.1	0.1	1.8	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TrkA_N	PF02254.18	gi|336253011|ref|YP_004596118.1|	-	0.068	13.4	1.4	2.1	8.6	0.1	2.6	2	0	0	2	2	2	0	TrkA-N	domain
Sugar_tr	PF00083.24	gi|336253012|ref|YP_004596119.1|	-	5.3e-131	437.6	19.4	6.1e-131	437.4	19.4	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|336253012|ref|YP_004596119.1|	-	5.6e-45	153.8	70.5	8.8e-36	123.5	39.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TRI12	PF06609.13	gi|336253012|ref|YP_004596119.1|	-	1.1e-07	30.7	3.4	1.1e-07	30.7	3.4	2.1	1	1	1	2	2	2	2	Fungal	trichothecene	efflux	pump	(TRI12)
OATP	PF03137.20	gi|336253012|ref|YP_004596119.1|	-	0.00065	18.1	7.4	0.011	14.1	0.5	3.0	1	1	1	2	2	2	2	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_2	PF13347.6	gi|336253012|ref|YP_004596119.1|	-	0.00073	18.2	37.0	0.00084	18.0	4.8	4.1	3	1	1	4	4	4	2	MFS/sugar	transport	protein
MFS_1_like	PF12832.7	gi|336253012|ref|YP_004596119.1|	-	0.34	9.7	13.5	0.072	11.9	0.3	2.9	1	1	1	2	2	2	0	MFS_1	like	family
Gly-zipper_Omp	PF13488.6	gi|336253012|ref|YP_004596119.1|	-	0.89	9.6	11.6	0.032	14.2	4.2	2.6	2	0	0	2	2	2	0	Glycine	zipper
Gly-zipper_YMGG	PF13441.6	gi|336253012|ref|YP_004596119.1|	-	4.7	7.0	9.7	0.28	11.0	3.2	2.4	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
DUF2071	PF09844.9	gi|336253013|ref|YP_004596120.1|	-	1.4e-67	227.4	0.1	1.6e-67	227.2	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.11	gi|336253013|ref|YP_004596120.1|	-	1.2e-05	25.0	0.1	3.8e-05	23.4	0.1	1.9	1	1	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
TFIIB	PF00382.19	gi|336253014|ref|YP_004596121.1|	-	1.8e-23	82.4	1.6	4.6e-14	52.2	0.4	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336253014|ref|YP_004596121.1|	-	1.9e-10	40.1	4.6	3e-10	39.4	4.6	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|336253014|ref|YP_004596121.1|	-	0.013	15.5	1.1	0.028	14.5	1.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
RB_B	PF01857.20	gi|336253014|ref|YP_004596121.1|	-	0.026	14.6	0.0	0.041	13.9	0.0	1.2	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
OrfB_Zn_ribbon	PF07282.11	gi|336253014|ref|YP_004596121.1|	-	0.11	12.5	1.5	0.27	11.2	1.5	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|336253014|ref|YP_004596121.1|	-	0.27	11.4	3.3	3.4	7.9	0.2	2.6	1	1	1	2	2	2	0	Zinc	ribbon	domain
HNH	PF01844.23	gi|336253014|ref|YP_004596121.1|	-	0.88	9.8	4.0	0.36	11.0	0.6	2.0	1	1	0	2	2	2	0	HNH	endonuclease
MCM	PF00493.23	gi|336253015|ref|YP_004596122.1|	-	1.7e-92	308.6	0.0	2.8e-92	307.9	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|336253015|ref|YP_004596122.1|	-	6.6e-37	126.2	0.2	1.1e-36	125.4	0.2	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|336253015|ref|YP_004596122.1|	-	1.1e-28	99.5	0.4	2.4e-28	98.4	0.4	1.6	1	0	0	1	1	1	1	MCM	AAA-lid	domain
Mg_chelatase	PF01078.21	gi|336253015|ref|YP_004596122.1|	-	9.1e-10	38.3	0.0	1e-05	25.1	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MCM_N	PF14551.6	gi|336253015|ref|YP_004596122.1|	-	3.6e-09	37.1	0.9	3.6e-09	37.1	0.9	2.8	2	1	0	2	2	2	1	MCM	N-terminal	domain
AAA_5	PF07728.14	gi|336253015|ref|YP_004596122.1|	-	3.9e-06	26.9	0.0	1.1e-05	25.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|336253015|ref|YP_004596122.1|	-	0.00055	20.4	1.4	0.0019	18.6	0.1	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|336253015|ref|YP_004596122.1|	-	0.001	18.8	0.1	0.02	14.6	0.1	2.3	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.29	gi|336253015|ref|YP_004596122.1|	-	0.031	14.7	0.1	0.16	12.4	0.0	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_3	PF07726.11	gi|336253015|ref|YP_004596122.1|	-	0.035	14.0	0.0	0.14	12.0	0.0	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|336253015|ref|YP_004596122.1|	-	0.038	13.7	0.2	0.094	12.4	0.2	1.6	1	0	0	1	1	1	0	AAA	domain
DUF5631	PF18645.1	gi|336253015|ref|YP_004596122.1|	-	0.062	13.7	0.2	1.3	9.4	0.0	2.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5631)
SurA_N_2	PF13623.6	gi|336253015|ref|YP_004596122.1|	-	2.3	8.1	4.7	8.7	6.2	0.3	3.4	4	0	0	4	4	4	0	SurA	N-terminal	domain
DUF502	PF04367.13	gi|336253016|ref|YP_004596123.1|	-	6.7e-25	87.0	0.8	8.9e-25	86.6	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
FtsX	PF02687.21	gi|336253016|ref|YP_004596123.1|	-	0.0075	16.7	1.7	0.013	16.0	1.7	1.2	1	0	0	1	1	1	1	FtsX-like	permease	family
zf-CSL	PF05207.13	gi|336253017|ref|YP_004596124.1|	-	0.0073	16.0	0.3	0.31	10.8	0.1	2.2	2	0	0	2	2	2	2	CSL	zinc	finger
Aldo_ket_red	PF00248.21	gi|336253018|ref|YP_004596125.1|	-	4.2e-59	200.2	0.0	3.7e-47	160.9	0.0	2.0	1	1	1	2	2	2	2	Aldo/keto	reductase	family
HTH_Tnp_1	PF01527.20	gi|336253018|ref|YP_004596125.1|	-	0.01	16.2	0.1	2.6	8.4	0.0	3.2	3	0	0	3	3	3	0	Transposase
IP_trans	PF02121.18	gi|336253018|ref|YP_004596125.1|	-	0.15	11.6	0.0	0.23	11.0	0.0	1.2	1	0	0	1	1	1	0	Phosphatidylinositol	transfer	protein
BofA	PF07441.11	gi|336253019|ref|YP_004596126.1|	-	4.8e-08	33.1	18.6	6.5e-08	32.7	18.6	1.2	1	0	0	1	1	1	1	SigmaK-factor	processing	regulatory	protein	BofA
GTA_holin_3TM	PF11351.8	gi|336253019|ref|YP_004596126.1|	-	0.71	10.4	3.8	0.94	10.0	3.8	1.2	1	0	0	1	1	1	0	Holin	of	3TMs,	for	gene-transfer	release
7TMR-DISM_7TM	PF07695.11	gi|336253020|ref|YP_004596127.1|	-	0.004	17.1	0.6	0.0045	16.9	0.6	1.0	1	0	0	1	1	1	1	7TM	diverse	intracellular	signalling
MBOAT	PF03062.19	gi|336253020|ref|YP_004596127.1|	-	0.0071	15.7	1.3	0.0089	15.4	1.3	1.0	1	0	0	1	1	1	1	MBOAT,	membrane-bound	O-acyltransferase	family
DUF4131	PF13567.6	gi|336253020|ref|YP_004596127.1|	-	0.014	15.1	0.1	0.014	15.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Herpes_LMP1	PF05297.11	gi|336253020|ref|YP_004596127.1|	-	0.028	13.6	0.2	0.032	13.5	0.2	1.1	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF4175	PF13779.6	gi|336253020|ref|YP_004596127.1|	-	0.045	11.7	0.9	0.047	11.6	0.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
Conotoxin	PF02950.17	gi|336253020|ref|YP_004596127.1|	-	0.21	12.6	0.6	2.3	9.3	0.0	2.1	2	0	0	2	2	2	0	Conotoxin
DUF2721	PF11026.8	gi|336253020|ref|YP_004596127.1|	-	0.5	10.3	6.0	0.64	9.9	6.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
DUF2299	PF10061.9	gi|336253021|ref|YP_004596128.1|	-	0.054	13.2	0.0	0.086	12.6	0.0	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2299)
LRV	PF01816.17	gi|336253021|ref|YP_004596128.1|	-	0.27	11.7	2.2	18	6.0	0.2	2.5	2	0	0	2	2	2	0	Leucine	rich	repeat	variant
DEAD	PF00270.29	gi|336253022|ref|YP_004596129.1|	-	9.6e-22	77.6	0.0	2e-21	76.6	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|336253022|ref|YP_004596129.1|	-	3.8e-15	56.2	0.0	9.2e-15	54.9	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|336253022|ref|YP_004596129.1|	-	3.1e-10	40.3	0.0	5.6e-10	39.5	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
MCPsignal	PF00015.21	gi|336253023|ref|YP_004596130.1|	-	1.5e-29	103.0	26.8	1.5e-29	103.0	26.8	4.9	1	1	4	5	5	5	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|336253023|ref|YP_004596130.1|	-	4.2e-09	36.6	1.7	4.2e-09	36.6	1.7	5.2	5	1	0	5	5	5	2	HAMP	domain
dCache_1	PF02743.18	gi|336253023|ref|YP_004596130.1|	-	1.9e-07	31.1	0.4	1.9e-07	31.1	0.4	4.1	3	2	1	4	4	4	1	Cache	domain
Spc7	PF08317.11	gi|336253023|ref|YP_004596130.1|	-	0.016	14.1	29.8	0.0068	15.3	5.5	3.6	2	1	1	3	3	3	0	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|336253023|ref|YP_004596130.1|	-	0.031	14.3	22.7	0.29	11.2	0.5	5.4	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1664)
DUF948	PF06103.11	gi|336253023|ref|YP_004596130.1|	-	0.081	13.2	31.4	1.3	9.3	0.4	6.7	3	1	2	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|336253023|ref|YP_004596130.1|	-	0.16	12.0	33.8	0.12	12.4	2.4	5.4	3	2	2	5	5	5	0	Laminin	Domain	II
AAA_13	PF13166.6	gi|336253023|ref|YP_004596130.1|	-	0.18	10.4	30.9	0.01	14.5	7.9	2.3	1	1	1	2	2	2	0	AAA	domain
Fzo_mitofusin	PF04799.13	gi|336253023|ref|YP_004596130.1|	-	0.63	9.6	21.0	0.12	11.9	2.3	4.3	4	1	1	5	5	5	0	fzo-like	conserved	region
DUF2203	PF09969.9	gi|336253023|ref|YP_004596130.1|	-	0.98	10.2	31.6	0.081	13.6	0.8	5.2	2	1	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
Fib_alpha	PF08702.10	gi|336253023|ref|YP_004596130.1|	-	6.1	7.0	14.4	15	5.7	0.2	4.0	3	2	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
CorA	PF01544.18	gi|336253023|ref|YP_004596130.1|	-	6.5	6.0	29.7	0.89	8.8	5.9	3.9	2	1	1	4	4	4	0	CorA-like	Mg2+	transporter	protein
Syntaxin_2	PF14523.6	gi|336253023|ref|YP_004596130.1|	-	8.8	6.8	6.5	8.5	6.8	0.3	3.8	4	2	0	4	4	3	0	Syntaxin-like	protein
Peripla_BP_2	PF01497.18	gi|336253024|ref|YP_004596131.1|	-	5.5e-22	78.5	0.2	7.3e-22	78.1	0.2	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|336253024|ref|YP_004596131.1|	-	0.078	12.9	1.9	0.12	12.3	1.9	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TP6A_N	PF04406.14	gi|336253024|ref|YP_004596131.1|	-	0.2	11.7	0.0	0.52	10.3	0.0	1.6	1	0	0	1	1	1	0	Type	IIB	DNA	topoisomerase
ABC_tran	PF00005.27	gi|336253025|ref|YP_004596132.1|	-	8.5e-31	107.3	0.0	1.2e-30	106.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336253025|ref|YP_004596132.1|	-	1.5e-13	51.2	0.9	1.2e-05	25.3	0.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336253025|ref|YP_004596132.1|	-	1.4e-11	44.3	0.2	4.4e-09	36.1	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336253025|ref|YP_004596132.1|	-	3.6e-06	26.6	0.0	8.9e-06	25.4	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|336253025|ref|YP_004596132.1|	-	8.5e-06	24.8	0.1	0.02	13.7	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|336253025|ref|YP_004596132.1|	-	1.2e-05	25.8	0.1	2.4e-05	24.8	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336253025|ref|YP_004596132.1|	-	1.2e-05	25.6	0.0	3.8e-05	24.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|336253025|ref|YP_004596132.1|	-	5.7e-05	23.0	0.0	0.00031	20.6	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336253025|ref|YP_004596132.1|	-	0.00027	21.5	0.0	0.00037	21.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ATP_bind_1	PF03029.17	gi|336253025|ref|YP_004596132.1|	-	0.00057	19.8	0.1	0.032	14.0	0.0	2.2	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
AAA_33	PF13671.6	gi|336253025|ref|YP_004596132.1|	-	0.001	19.3	0.0	0.0024	18.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|336253025|ref|YP_004596132.1|	-	0.0012	18.2	0.0	0.002	17.4	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_25	PF13481.6	gi|336253025|ref|YP_004596132.1|	-	0.0015	18.2	0.6	0.02	14.5	0.6	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|336253025|ref|YP_004596132.1|	-	0.0019	17.9	0.1	0.0049	16.6	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336253025|ref|YP_004596132.1|	-	0.0022	17.9	0.0	0.0045	16.9	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_18	PF13238.6	gi|336253025|ref|YP_004596132.1|	-	0.0025	18.4	0.0	0.0079	16.7	0.0	1.9	2	1	0	2	2	1	1	AAA	domain
HD	PF01966.22	gi|336253025|ref|YP_004596132.1|	-	0.0042	17.3	0.0	0.01	16.1	0.0	1.6	1	0	0	1	1	1	1	HD	domain
Mg_chelatase	PF01078.21	gi|336253025|ref|YP_004596132.1|	-	0.0055	16.1	0.1	3.2	7.1	0.0	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Rad17	PF03215.15	gi|336253025|ref|YP_004596132.1|	-	0.0072	16.3	0.1	0.017	15.1	0.0	1.6	2	0	0	2	2	1	1	Rad17	P-loop	domain
MukB	PF04310.12	gi|336253025|ref|YP_004596132.1|	-	0.0085	15.9	0.0	0.016	15.0	0.0	1.3	1	0	0	1	1	1	1	MukB	N-terminal
AAA	PF00004.29	gi|336253025|ref|YP_004596132.1|	-	0.02	15.3	0.0	0.05	14.0	0.0	1.6	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|336253025|ref|YP_004596132.1|	-	0.022	14.8	0.0	0.053	13.5	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|336253025|ref|YP_004596132.1|	-	0.028	14.0	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AviRa	PF11599.8	gi|336253025|ref|YP_004596132.1|	-	0.028	13.9	0.0	0.052	13.0	0.0	1.4	1	0	0	1	1	1	0	RRNA	methyltransferase	AviRa
DUF2813	PF11398.8	gi|336253025|ref|YP_004596132.1|	-	0.055	12.7	0.0	0.08	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2813)
AAA_28	PF13521.6	gi|336253025|ref|YP_004596132.1|	-	0.055	13.7	0.0	0.13	12.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|336253025|ref|YP_004596132.1|	-	0.083	12.9	0.0	0.2	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|336253025|ref|YP_004596132.1|	-	0.093	13.1	0.0	0.16	12.3	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_7	PF12775.7	gi|336253025|ref|YP_004596132.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
MMR_HSR1	PF01926.23	gi|336253025|ref|YP_004596132.1|	-	0.1	12.7	0.0	0.68	10.0	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
APS_kinase	PF01583.20	gi|336253025|ref|YP_004596132.1|	-	0.17	11.7	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DUF815	PF05673.13	gi|336253025|ref|YP_004596132.1|	-	0.18	11.0	0.0	0.32	10.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
FecCD	PF01032.18	gi|336253026|ref|YP_004596133.1|	-	3e-84	282.7	37.9	3.8e-84	282.3	37.9	1.1	1	0	0	1	1	1	1	FecCD	transport	family
Cupin_2	PF07883.11	gi|336253027|ref|YP_004596134.1|	-	4.4e-18	64.8	0.3	6.4e-18	64.2	0.3	1.3	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|336253027|ref|YP_004596134.1|	-	6.6e-10	38.8	0.0	9.3e-10	38.3	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|336253027|ref|YP_004596134.1|	-	4.5e-06	26.6	0.0	6.1e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.18	gi|336253027|ref|YP_004596134.1|	-	0.00017	21.5	0.0	0.00023	21.1	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
CENP-C_C	PF11699.8	gi|336253027|ref|YP_004596134.1|	-	0.0026	17.9	0.0	0.0035	17.5	0.0	1.1	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_3	PF05899.12	gi|336253027|ref|YP_004596134.1|	-	0.012	15.3	0.1	0.019	14.7	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
ARD	PF03079.14	gi|336253027|ref|YP_004596134.1|	-	0.024	14.8	0.0	0.034	14.3	0.0	1.2	1	0	0	1	1	1	0	ARD/ARD'	family
CSD	PF00313.22	gi|336253028|ref|YP_004596135.1|	-	2.2e-20	72.3	0.1	2.4e-20	72.1	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|336253028|ref|YP_004596135.1|	-	0.039	13.6	2.2	0.049	13.3	2.2	1.2	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
S1-like	PF14444.6	gi|336253028|ref|YP_004596135.1|	-	0.14	12.1	0.2	0.18	11.7	0.2	1.4	1	1	0	1	1	1	0	S1-like
HTH_24	PF13412.6	gi|336253029|ref|YP_004596136.1|	-	1.1e-14	53.7	0.4	1.8e-14	53.0	0.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336253029|ref|YP_004596136.1|	-	2.2e-10	40.2	1.6	3.7e-10	39.5	1.6	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336253029|ref|YP_004596136.1|	-	1.1e-08	34.9	0.1	2.5e-08	33.7	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|336253029|ref|YP_004596136.1|	-	2.5e-06	27.3	0.1	9.1e-06	25.5	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336253029|ref|YP_004596136.1|	-	8.3e-06	25.5	0.0	1.5e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336253029|ref|YP_004596136.1|	-	1.1e-05	25.6	0.1	5.8e-05	23.2	0.1	2.0	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|336253029|ref|YP_004596136.1|	-	2.1e-05	24.3	0.0	4.4e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|336253029|ref|YP_004596136.1|	-	4.4e-05	23.5	0.1	9.9e-05	22.3	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336253029|ref|YP_004596136.1|	-	0.00022	20.8	0.2	0.00042	19.9	0.2	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
Rrf2	PF02082.20	gi|336253029|ref|YP_004596136.1|	-	0.00023	21.5	0.0	0.00045	20.5	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_DeoR	PF08220.12	gi|336253029|ref|YP_004596136.1|	-	0.00065	19.4	0.1	0.0048	16.6	0.1	2.1	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|336253029|ref|YP_004596136.1|	-	0.0022	18.0	0.0	0.0041	17.1	0.0	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_12	PF08461.10	gi|336253029|ref|YP_004596136.1|	-	0.0029	17.5	0.5	0.018	15.0	0.3	2.4	2	1	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
HTH_Crp_2	PF13545.6	gi|336253029|ref|YP_004596136.1|	-	0.0032	17.4	0.1	0.0068	16.4	0.1	1.5	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|336253029|ref|YP_004596136.1|	-	0.0034	17.0	0.1	0.0056	16.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.6	gi|336253029|ref|YP_004596136.1|	-	0.0042	17.2	0.1	0.0075	16.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|336253029|ref|YP_004596136.1|	-	0.0055	16.3	0.0	0.0091	15.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Put_DNA-bind_N	PF06971.13	gi|336253029|ref|YP_004596136.1|	-	0.0057	16.7	0.2	0.013	15.5	0.2	1.5	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
DUF2250	PF10007.9	gi|336253029|ref|YP_004596136.1|	-	0.0062	16.6	0.1	0.11	12.6	0.1	2.1	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Nuc_N	PF14448.6	gi|336253029|ref|YP_004596136.1|	-	0.0068	16.2	0.5	0.013	15.4	0.1	1.6	2	0	0	2	2	2	1	Nuclease	N	terminal
HTH_27	PF13463.6	gi|336253029|ref|YP_004596136.1|	-	0.0076	16.7	0.0	0.015	15.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|336253029|ref|YP_004596136.1|	-	0.0077	16.1	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|336253029|ref|YP_004596136.1|	-	0.013	15.3	0.2	0.022	14.5	0.2	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|336253029|ref|YP_004596136.1|	-	0.013	15.0	0.5	0.026	14.1	0.5	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
TrmB	PF01978.19	gi|336253029|ref|YP_004596136.1|	-	0.02	14.8	0.1	0.038	13.9	0.1	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_antitermQ	PF06530.12	gi|336253029|ref|YP_004596136.1|	-	0.15	12.0	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	Phage	antitermination	protein	Q
HTH_10	PF04967.12	gi|336253029|ref|YP_004596136.1|	-	0.17	11.8	0.3	0.37	10.6	0.3	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Proton_antipo_M	PF00361.20	gi|336253030|ref|YP_004596137.1|	-	7.8e-39	133.6	19.2	7.8e-39	133.6	19.2	1.7	1	1	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|336253030|ref|YP_004596137.1|	-	4.1e-10	39.6	0.9	4.1e-10	39.6	0.9	3.3	3	0	0	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2309	PF10070.9	gi|336253031|ref|YP_004596138.1|	-	1.5e-269	896.5	0.0	1.8e-269	896.3	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
LptF_LptG	PF03739.14	gi|336253032|ref|YP_004596139.1|	-	0.024	13.5	2.4	0.025	13.4	2.4	1.0	1	0	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
YqzM	PF14141.6	gi|336253032|ref|YP_004596139.1|	-	0.074	13.1	10.9	0.71	10.0	1.8	2.1	2	0	0	2	2	2	0	YqzM-like	protein
LPG_synthase_TM	PF03706.13	gi|336253032|ref|YP_004596139.1|	-	0.45	10.0	9.7	0.94	8.9	9.8	1.5	1	1	0	1	1	1	0	Lysylphosphatidylglycerol	synthase	TM	region
MtrF	PF09472.10	gi|336253032|ref|YP_004596139.1|	-	1.8	8.0	8.8	3	7.3	2.0	2.1	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
FixQ	PF05545.11	gi|336253032|ref|YP_004596139.1|	-	3.3	7.8	5.8	4	7.5	0.2	2.2	2	0	0	2	2	2	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Pro_CA	PF00484.19	gi|336253033|ref|YP_004596140.1|	-	4.3e-26	92.1	0.0	5.8e-26	91.6	0.0	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
TetR_C_11	PF16859.5	gi|336253033|ref|YP_004596140.1|	-	0.032	14.6	0.3	0.1	12.9	0.2	1.9	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
ADH_N_2	PF16884.5	gi|336253034|ref|YP_004596141.1|	-	7.6e-42	141.6	0.1	1.3e-41	140.8	0.1	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
ADH_zinc_N	PF00107.26	gi|336253034|ref|YP_004596141.1|	-	1.7e-23	83.0	0.0	2.4e-23	82.5	0.0	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|336253034|ref|YP_004596141.1|	-	1.2e-09	39.3	0.0	2.2e-09	38.4	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Abhydrolase_1	PF00561.20	gi|336253035|ref|YP_004596142.1|	-	3.3e-16	59.7	0.0	5.6e-16	58.9	0.0	1.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|336253035|ref|YP_004596142.1|	-	2.3e-11	44.8	10.2	2.9e-11	44.4	10.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|336253035|ref|YP_004596142.1|	-	3.9e-06	26.3	0.0	1e-05	24.9	0.0	1.6	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Esterase	PF00756.20	gi|336253035|ref|YP_004596142.1|	-	0.018	14.7	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
DUF2244	PF10003.9	gi|336253036|ref|YP_004596143.1|	-	0.086	12.5	3.3	0.1	12.3	3.3	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
SLATT_3	PF18184.1	gi|336253036|ref|YP_004596143.1|	-	0.2	11.8	2.2	0.21	11.7	2.2	1.2	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
ABC2_membrane	PF01061.24	gi|336253037|ref|YP_004596144.1|	-	3.2e-30	105.1	15.4	4.1e-30	104.8	15.4	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC_tran	PF00005.27	gi|336253038|ref|YP_004596145.1|	-	2.1e-30	106.0	0.0	3.3e-30	105.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336253038|ref|YP_004596145.1|	-	1.1e-14	55.0	2.7	7.8e-10	39.0	0.1	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336253038|ref|YP_004596145.1|	-	1.3e-09	38.6	0.0	4.6e-09	36.9	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|336253038|ref|YP_004596145.1|	-	0.0006	19.6	0.0	0.0014	18.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|336253038|ref|YP_004596145.1|	-	0.0052	17.3	0.4	0.011	16.3	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|336253038|ref|YP_004596145.1|	-	0.0088	15.8	0.1	2.4	7.9	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
SMC_N	PF02463.19	gi|336253038|ref|YP_004596145.1|	-	0.012	15.1	0.0	1.7	8.0	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|336253038|ref|YP_004596145.1|	-	0.018	14.9	0.0	0.036	14.0	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_15	PF13175.6	gi|336253038|ref|YP_004596145.1|	-	0.023	14.4	0.0	1.8	8.2	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|336253038|ref|YP_004596145.1|	-	0.041	13.6	0.1	0.41	10.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|336253038|ref|YP_004596145.1|	-	0.047	13.4	0.0	0.097	12.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.17	gi|336253038|ref|YP_004596145.1|	-	0.048	13.4	0.0	0.27	11.0	0.0	1.9	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1	PF01926.23	gi|336253038|ref|YP_004596145.1|	-	0.074	13.1	0.1	0.19	11.8	0.1	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ATPase_2	PF01637.18	gi|336253038|ref|YP_004596145.1|	-	0.1	12.5	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|336253038|ref|YP_004596145.1|	-	0.12	12.3	0.2	1.6	8.6	0.0	2.4	2	1	0	2	2	2	0	NTPase
SRP54	PF00448.22	gi|336253038|ref|YP_004596145.1|	-	0.15	11.7	0.0	0.26	10.9	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
FlbD	PF06289.11	gi|336253038|ref|YP_004596145.1|	-	0.27	10.9	1.2	1.2	8.8	0.3	2.2	2	0	0	2	2	2	0	Flagellar	and	Swarming	motility	proteins
CBS	PF00571.28	gi|336253039|ref|YP_004596146.1|	-	1.8e-24	85.9	4.7	1.8e-12	47.5	0.7	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|336253039|ref|YP_004596146.1|	-	1.5e-15	57.1	5.5	3.8e-08	32.9	0.1	3.2	2	1	1	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|336253039|ref|YP_004596146.1|	-	0.00033	20.3	1.3	0.00033	20.3	1.3	2.3	1	1	1	3	3	3	1	Peptidase	M50B-like
DUF3267	PF11667.8	gi|336253039|ref|YP_004596146.1|	-	0.002	18.4	0.7	0.002	18.4	0.7	2.2	2	0	0	2	2	2	1	Putative	zincin	peptidase
ThrE	PF06738.12	gi|336253039|ref|YP_004596146.1|	-	6.6	6.0	10.1	0.14	11.5	1.9	2.0	2	0	0	2	2	2	0	Putative	threonine/serine	exporter
TrmB	PF01978.19	gi|336253040|ref|YP_004596147.1|	-	6.2e-06	26.0	0.1	1.8e-05	24.5	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336253040|ref|YP_004596147.1|	-	6.9e-05	22.7	0.1	8.6e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|336253040|ref|YP_004596147.1|	-	0.00021	21.1	0.0	0.00029	20.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|336253040|ref|YP_004596147.1|	-	0.00096	19.6	0.0	0.0013	19.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|336253040|ref|YP_004596147.1|	-	0.0027	17.5	0.4	0.004	16.9	0.4	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336253040|ref|YP_004596147.1|	-	0.032	14.1	0.1	0.046	13.6	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
B-block_TFIIIC	PF04182.12	gi|336253040|ref|YP_004596147.1|	-	0.04	14.1	0.0	0.054	13.7	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_20	PF12840.7	gi|336253040|ref|YP_004596147.1|	-	0.059	13.4	0.1	0.089	12.9	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ribosomal_L16	PF00252.18	gi|336253041|ref|YP_004596148.1|	-	7.8e-32	110.1	0.0	8.9e-32	109.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
RimK	PF08443.11	gi|336253043|ref|YP_004596150.1|	-	3.1e-22	79.1	0.0	4.3e-22	78.6	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|336253043|ref|YP_004596150.1|	-	5.5e-12	45.4	0.0	8.2e-12	44.9	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|336253043|ref|YP_004596150.1|	-	2.5e-06	27.6	0.0	4.7e-06	26.7	0.0	1.4	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|336253043|ref|YP_004596150.1|	-	1.4e-05	24.5	0.0	0.008	15.5	0.0	2.2	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
Dala_Dala_lig_C	PF07478.13	gi|336253043|ref|YP_004596150.1|	-	0.0042	16.6	0.0	0.009	15.6	0.0	1.5	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
TTL	PF03133.15	gi|336253043|ref|YP_004596150.1|	-	0.0047	16.1	0.0	0.024	13.8	0.0	1.8	2	0	0	2	2	2	1	Tubulin-tyrosine	ligase	family
ATPgrasp_TupA	PF14305.6	gi|336253043|ref|YP_004596150.1|	-	0.0082	16.0	0.0	0.018	14.9	0.0	1.5	2	0	0	2	2	2	1	TupA-like	ATPgrasp
R2K_3	PF14243.6	gi|336253043|ref|YP_004596150.1|	-	0.042	13.9	0.3	0.061	13.3	0.3	1.3	1	0	0	1	1	1	0	ATP-grasp	domain,	R2K	clade	family	3
CPSase_L_D2	PF02786.17	gi|336253043|ref|YP_004596150.1|	-	0.067	12.7	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ArsA_HSP20	PF17886.1	gi|336253044|ref|YP_004596151.1|	-	1.1e-20	73.0	0.0	1.5e-20	72.5	0.0	1.2	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|336253044|ref|YP_004596151.1|	-	5.6e-10	39.3	0.1	1.1e-08	35.1	0.1	2.0	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|336253044|ref|YP_004596151.1|	-	6.4e-07	29.6	1.1	7.4e-07	29.4	1.1	1.2	1	0	0	1	1	1	1	GvpH
PIH1_CS	PF18201.1	gi|336253044|ref|YP_004596151.1|	-	0.04	14.3	0.0	0.058	13.8	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
Gp_dh_C	PF02800.20	gi|336253045|ref|YP_004596152.1|	-	1e-17	64.2	0.0	1.6e-17	63.6	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|336253045|ref|YP_004596152.1|	-	1.8e-09	37.8	0.0	4.1e-09	36.6	0.0	1.7	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|336253045|ref|YP_004596152.1|	-	0.00013	22.2	0.0	0.00033	20.9	0.0	1.7	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336253045|ref|YP_004596152.1|	-	0.0013	18.2	0.3	0.11	11.8	0.2	2.3	1	1	1	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|336253045|ref|YP_004596152.1|	-	0.0027	18.4	0.4	0.064	13.9	0.4	2.8	2	1	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|336253045|ref|YP_004596152.1|	-	0.049	14.5	0.2	0.14	12.9	0.1	1.9	1	1	1	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TrkA_N	PF02254.18	gi|336253045|ref|YP_004596152.1|	-	0.13	12.5	0.1	0.32	11.3	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Gp_dh_C	PF02800.20	gi|336253046|ref|YP_004596153.1|	-	3.6e-62	208.6	0.0	4.9e-62	208.2	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.24	gi|336253046|ref|YP_004596153.1|	-	6.7e-34	116.3	0.0	1.3e-33	115.3	0.0	1.5	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|336253046|ref|YP_004596153.1|	-	0.011	15.8	0.0	0.043	13.9	0.0	2.0	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
ADH_zinc_N	PF00107.26	gi|336253046|ref|YP_004596153.1|	-	0.032	14.2	0.0	0.055	13.5	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
PGK	PF00162.19	gi|336253047|ref|YP_004596154.1|	-	1.2e-99	333.9	0.0	1.4e-99	333.6	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
DUF2048	PF09752.9	gi|336253048|ref|YP_004596155.1|	-	0.047	12.8	0.0	0.058	12.5	0.0	1.1	1	0	0	1	1	1	0	Abhydrolase	domain	containing	18
CcmH	PF03918.14	gi|336253048|ref|YP_004596155.1|	-	0.061	12.6	0.0	0.13	11.5	0.0	1.5	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein
CoA_binding_3	PF13727.6	gi|336253048|ref|YP_004596155.1|	-	0.074	13.1	0.7	0.12	12.4	0.1	1.6	1	1	1	2	2	2	0	CoA-binding	domain
Peptidase_M29	PF02073.15	gi|336253049|ref|YP_004596156.1|	-	6.6e-12	44.9	0.0	7.1e-11	41.5	0.0	1.9	2	0	0	2	2	2	1	Thermophilic	metalloprotease	(M29)
Spore_YhcN_YlaJ	PF09580.10	gi|336253049|ref|YP_004596156.1|	-	0.93	9.6	4.2	11	6.1	0.1	3.0	3	0	0	3	3	3	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
HTH_20	PF12840.7	gi|336253050|ref|YP_004596157.1|	-	2.7e-05	24.1	0.0	7.9e-05	22.6	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.7	gi|336253050|ref|YP_004596157.1|	-	0.085	12.9	2.8	2.2	8.4	0.4	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
Se-cys_synth_N	PF12390.8	gi|336253050|ref|YP_004596157.1|	-	0.65	10.3	2.5	0.57	10.4	0.2	2.2	3	0	0	3	3	3	0	Selenocysteine	synthase	N	terminal
Peptidase_M23	PF01551.22	gi|336253051|ref|YP_004596158.1|	-	3.1e-21	75.4	0.1	1.5e-20	73.2	0.0	1.9	2	0	0	2	2	2	1	Peptidase	family	M23
Lar_restr_allev	PF14354.6	gi|336253052|ref|YP_004596159.1|	-	0.044	14.2	1.4	0.073	13.5	0.5	1.9	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
DraK_HK_N	PF18092.1	gi|336253052|ref|YP_004596159.1|	-	0.11	13.0	11.7	0.59	10.6	1.2	3.3	2	1	1	3	3	3	0	DraK	Histidine	Kinase	N-terminal	domain
zinc_ribbon_4	PF13717.6	gi|336253052|ref|YP_004596159.1|	-	0.14	12.1	4.1	0.75	9.8	4.1	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253052|ref|YP_004596159.1|	-	0.14	11.6	0.1	0.14	11.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-DNL	PF05180.12	gi|336253052|ref|YP_004596159.1|	-	0.15	12.0	0.3	0.29	11.1	0.3	1.4	1	0	0	1	1	1	0	DNL	zinc	finger
Zn-ribbon_8	PF09723.10	gi|336253052|ref|YP_004596159.1|	-	0.25	11.5	3.0	9.9	6.4	0.1	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|336253052|ref|YP_004596159.1|	-	2.8	7.8	4.3	7.9	6.3	4.3	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
SBF_like	PF13593.6	gi|336253053|ref|YP_004596160.1|	-	9.1e-10	38.3	21.8	8.8e-09	35.1	21.8	2.0	1	1	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
SBF	PF01758.16	gi|336253053|ref|YP_004596160.1|	-	5.6e-08	32.7	12.1	5.6e-08	32.7	12.1	2.2	1	1	1	3	3	3	1	Sodium	Bile	acid	symporter	family
Tox-WTIP	PF15654.6	gi|336253053|ref|YP_004596160.1|	-	2.5	8.6	5.2	5.9	7.4	0.4	2.8	3	0	0	3	3	3	0	Toxin	with	a	conserved	tryptophan	and	TIP	tripeptide	motif
PCMT	PF01135.19	gi|336253054|ref|YP_004596161.1|	-	1.9e-62	210.7	0.0	2.2e-62	210.5	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|336253054|ref|YP_004596161.1|	-	1.2e-06	29.1	0.0	2.5e-06	28.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253054|ref|YP_004596161.1|	-	5.3e-05	23.1	0.0	7.1e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|336253054|ref|YP_004596161.1|	-	0.00012	21.3	0.0	0.00016	20.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.20	gi|336253054|ref|YP_004596161.1|	-	0.00014	21.3	0.0	0.00021	20.7	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
GCD14	PF08704.10	gi|336253054|ref|YP_004596161.1|	-	0.00019	21.2	0.0	0.00033	20.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Fibrillarin	PF01269.17	gi|336253054|ref|YP_004596161.1|	-	0.016	14.4	0.0	0.022	13.9	0.0	1.1	1	0	0	1	1	1	0	Fibrillarin
DUF938	PF06080.12	gi|336253054|ref|YP_004596161.1|	-	0.02	14.6	0.0	0.028	14.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_18	PF12847.7	gi|336253054|ref|YP_004596161.1|	-	0.025	14.5	0.0	0.04	13.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|336253054|ref|YP_004596161.1|	-	0.054	13.5	0.0	0.082	12.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
DOT1	PF08123.13	gi|336253054|ref|YP_004596161.1|	-	0.089	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
Methyltransf_23	PF13489.6	gi|336253054|ref|YP_004596161.1|	-	0.13	12.1	0.0	0.15	11.9	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|336253054|ref|YP_004596161.1|	-	0.16	11.5	0.0	0.26	10.8	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
DUF2795	PF11387.8	gi|336253054|ref|YP_004596161.1|	-	0.2	11.9	0.2	0.2	11.9	0.2	2.0	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF2795)
PCMT	PF01135.19	gi|336253055|ref|YP_004596162.1|	-	1.6e-36	126.1	0.0	2.1e-36	125.7	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|336253055|ref|YP_004596162.1|	-	2.9e-08	33.7	0.0	4.2e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|336253055|ref|YP_004596162.1|	-	1.4e-05	24.7	0.0	2.2e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|336253055|ref|YP_004596162.1|	-	2.3e-05	25.0	0.1	5.6e-05	23.8	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336253055|ref|YP_004596162.1|	-	0.022	15.5	0.0	0.058	14.1	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|336253055|ref|YP_004596162.1|	-	0.029	13.8	0.0	0.044	13.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Sacchrp_dh_NADP	PF03435.18	gi|336253055|ref|YP_004596162.1|	-	0.034	14.4	0.1	0.074	13.3	0.0	1.6	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
Methyltr_RsmB-F	PF01189.17	gi|336253055|ref|YP_004596162.1|	-	0.038	13.6	0.0	0.072	12.7	0.0	1.4	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
CMAS	PF02353.20	gi|336253055|ref|YP_004596162.1|	-	0.039	13.2	0.0	0.061	12.6	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Fibrillarin	PF01269.17	gi|336253055|ref|YP_004596162.1|	-	0.049	12.8	0.0	0.064	12.4	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Met_10	PF02475.16	gi|336253055|ref|YP_004596162.1|	-	0.052	13.3	0.1	0.093	12.5	0.1	1.3	1	0	0	1	1	1	0	Met-10+	like-protein
ACP_syn_III_C	PF08541.10	gi|336253055|ref|YP_004596162.1|	-	0.079	13.1	0.1	0.18	12.0	0.1	1.5	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
BAT	PF15915.5	gi|336253056|ref|YP_004596163.1|	-	2.9e-32	111.7	10.9	2.9e-32	111.7	10.9	2.9	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|336253056|ref|YP_004596163.1|	-	1.1e-25	90.6	7.7	1.5e-14	54.5	0.9	2.6	2	0	0	2	2	2	2	GAF	domain
Response_reg	PF00072.24	gi|336253056|ref|YP_004596163.1|	-	1.3e-22	80.1	0.0	3.3e-22	78.8	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HTH_10	PF04967.12	gi|336253056|ref|YP_004596163.1|	-	6.6e-20	70.7	0.1	2.1e-19	69.0	0.1	2.0	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_3	PF13492.6	gi|336253056|ref|YP_004596163.1|	-	3.1e-09	37.3	0.2	0.00041	20.7	0.0	2.9	2	1	0	2	2	2	2	GAF	domain
OKR_DC_1_N	PF03709.15	gi|336253056|ref|YP_004596163.1|	-	5e-06	26.8	0.3	4.1e-05	23.8	0.0	2.6	3	0	0	3	3	3	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
GAF	PF01590.26	gi|336253056|ref|YP_004596163.1|	-	2.4e-05	24.9	0.1	0.00035	21.2	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
RasGAP_C	PF03836.15	gi|336253056|ref|YP_004596163.1|	-	0.39	10.9	2.3	0.89	9.7	0.1	2.2	2	0	0	2	2	2	0	RasGAP	C-terminus
MCPsignal	PF00015.21	gi|336253057|ref|YP_004596164.1|	-	5.7e-41	140.2	25.5	5.7e-41	140.2	25.5	5.9	2	1	4	6	6	6	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|336253057|ref|YP_004596164.1|	-	4.9e-08	33.2	16.0	7.5e-06	26.2	0.1	5.2	5	1	0	5	5	5	2	HAMP	domain
dCache_1	PF02743.18	gi|336253057|ref|YP_004596164.1|	-	1.1e-06	28.6	0.4	1.1e-06	28.6	0.4	5.1	3	2	1	5	5	5	2	Cache	domain
ATP-synt_B	PF00430.18	gi|336253057|ref|YP_004596164.1|	-	0.0021	18.2	27.9	0.0021	18.2	27.9	5.4	4	1	0	5	5	4	1	ATP	synthase	B/B'	CF(0)
TPR_MLP1_2	PF07926.12	gi|336253057|ref|YP_004596164.1|	-	0.0096	16.0	12.0	0.0096	16.0	12.0	5.6	2	1	3	5	5	5	3	TPR/MLP1/MLP2-like	protein
SnoaL_2	PF12680.7	gi|336253057|ref|YP_004596164.1|	-	0.15	12.7	7.8	8.6	7.1	0.0	4.5	3	1	2	5	5	5	0	SnoaL-like	domain
DUF948	PF06103.11	gi|336253057|ref|YP_004596164.1|	-	0.34	11.2	51.9	0.75	10.1	1.1	8.2	2	1	7	9	9	9	0	Bacterial	protein	of	unknown	function	(DUF948)
Mod_r	PF07200.13	gi|336253057|ref|YP_004596164.1|	-	0.43	10.7	45.2	0.6	10.2	0.0	5.3	2	2	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
SnoaL	PF07366.12	gi|336253057|ref|YP_004596164.1|	-	0.54	10.1	4.8	2.9	7.7	0.1	3.9	3	1	0	4	4	4	0	SnoaL-like	polyketide	cyclase
DASH_Dam1	PF08653.10	gi|336253057|ref|YP_004596164.1|	-	0.86	9.5	10.6	3.6	7.4	0.2	5.3	5	1	1	6	6	6	0	DASH	complex	subunit	Dam1
Fib_alpha	PF08702.10	gi|336253057|ref|YP_004596164.1|	-	4.4	7.5	41.0	0.029	14.6	3.5	5.3	3	2	3	6	6	6	0	Fibrinogen	alpha/beta	chain	family
Laminin_II	PF06009.12	gi|336253057|ref|YP_004596164.1|	-	4.8	7.2	57.3	0.041	13.9	6.9	6.6	2	1	5	7	7	7	0	Laminin	Domain	II
NAD_synthase	PF02540.17	gi|336253058|ref|YP_004596165.1|	-	3.8e-81	271.8	0.0	4.4e-81	271.6	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|336253058|ref|YP_004596165.1|	-	8.1e-05	21.6	0.0	0.011	14.6	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
HTH_23	PF13384.6	gi|336253058|ref|YP_004596165.1|	-	0.0043	16.8	0.1	1.6	8.6	0.1	3.6	4	0	0	4	4	4	1	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.6	gi|336253058|ref|YP_004596165.1|	-	0.043	13.2	0.1	0.32	10.4	0.1	2.5	2	1	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
FLYWCH_N	PF15423.6	gi|336253058|ref|YP_004596165.1|	-	0.047	13.8	0.0	0.13	12.4	0.0	1.6	2	0	0	2	2	2	0	FLYWCH-type	zinc	finger-containing	protein
QueC	PF06508.13	gi|336253058|ref|YP_004596165.1|	-	0.084	12.4	0.0	0.28	10.6	0.0	1.8	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
Acetyltransf_3	PF13302.7	gi|336253059|ref|YP_004596166.1|	-	4e-27	95.6	0.0	4.7e-27	95.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336253059|ref|YP_004596166.1|	-	1.4e-13	51.1	0.1	1.8e-13	50.7	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|336253059|ref|YP_004596166.1|	-	4.4e-12	46.4	0.0	5e-12	46.2	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|336253059|ref|YP_004596166.1|	-	2e-07	30.8	0.0	6.9e-07	29.0	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336253059|ref|YP_004596166.1|	-	0.00031	21.1	0.0	0.0005	20.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
TetR_N	PF00440.23	gi|336253059|ref|YP_004596166.1|	-	0.055	13.3	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Mrr_cat	PF04471.12	gi|336253061|ref|YP_004596168.1|	-	3.4e-27	94.8	0.2	4.6e-27	94.3	0.2	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|336253061|ref|YP_004596168.1|	-	4.7e-15	55.6	0.5	6.3e-15	55.2	0.5	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Epimerase	PF01370.21	gi|336253062|ref|YP_004596169.1|	-	2.7e-32	112.2	0.2	1.1e-31	110.2	0.2	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253062|ref|YP_004596169.1|	-	5.1e-22	78.7	0.0	8.6e-21	74.7	0.0	2.5	2	2	0	2	2	2	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336253062|ref|YP_004596169.1|	-	9.5e-16	57.7	0.3	1.9e-15	56.8	0.3	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|336253062|ref|YP_004596169.1|	-	2.3e-10	40.1	0.0	2.6e-08	33.3	0.0	2.2	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253062|ref|YP_004596169.1|	-	2e-08	34.3	0.8	2.8e-08	33.9	0.8	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
3Beta_HSD	PF01073.19	gi|336253062|ref|YP_004596169.1|	-	2.8e-08	33.1	0.0	3.9e-08	32.6	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336253062|ref|YP_004596169.1|	-	2.5e-06	26.8	0.1	0.00022	20.5	0.1	2.9	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|336253062|ref|YP_004596169.1|	-	0.00029	20.4	0.3	0.0033	16.9	0.2	2.5	2	1	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|336253062|ref|YP_004596169.1|	-	0.047	13.2	0.2	0.2	11.2	0.0	2.1	3	0	0	3	3	3	0	NmrA-like	family
KR	PF08659.10	gi|336253062|ref|YP_004596169.1|	-	0.09	12.7	0.1	0.3	11.0	0.1	1.9	1	1	0	1	1	1	0	KR	domain
AAA_33	PF13671.6	gi|336253063|ref|YP_004596170.1|	-	1.3e-12	48.1	0.5	2.4e-12	47.2	0.5	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|336253063|ref|YP_004596170.1|	-	1e-08	35.8	0.1	8.6e-05	23.1	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
KTI12	PF08433.10	gi|336253063|ref|YP_004596170.1|	-	4.2e-07	29.7	0.0	9.7e-06	25.2	0.0	2.0	1	1	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|336253063|ref|YP_004596170.1|	-	2.8e-06	27.6	0.0	1.2e-05	25.6	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336253063|ref|YP_004596170.1|	-	3.9e-05	24.1	0.0	5.8e-05	23.5	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|336253063|ref|YP_004596170.1|	-	7.9e-05	22.6	0.0	0.00018	21.5	0.0	2.0	1	1	0	1	1	1	1	NTPase
dNK	PF01712.19	gi|336253063|ref|YP_004596170.1|	-	0.00012	22.0	0.0	0.23	11.3	0.0	2.4	1	1	0	2	2	2	2	Deoxynucleoside	kinase
AAA_28	PF13521.6	gi|336253063|ref|YP_004596170.1|	-	0.00036	20.8	0.2	0.00074	19.8	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
CPT	PF07931.12	gi|336253063|ref|YP_004596170.1|	-	0.00045	20.1	0.2	0.017	15.0	0.3	2.0	1	1	1	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
AAA_30	PF13604.6	gi|336253063|ref|YP_004596170.1|	-	0.00072	19.3	0.0	0.0026	17.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|336253063|ref|YP_004596170.1|	-	0.0016	18.5	0.0	0.0045	17.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|336253063|ref|YP_004596170.1|	-	0.0025	17.1	0.0	0.014	14.7	0.0	2.1	1	1	1	2	2	2	1	Zeta	toxin
APS_kinase	PF01583.20	gi|336253063|ref|YP_004596170.1|	-	0.0026	17.6	0.0	0.06	13.2	0.0	2.5	1	1	0	1	1	1	1	Adenylylsulphate	kinase
cobW	PF02492.19	gi|336253063|ref|YP_004596170.1|	-	0.0034	17.0	0.0	0.0051	16.4	0.0	1.4	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.29	gi|336253063|ref|YP_004596170.1|	-	0.004	17.6	0.0	0.0077	16.7	0.0	1.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|336253063|ref|YP_004596170.1|	-	0.005	16.6	0.0	0.0095	15.7	0.0	1.5	1	1	1	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_19	PF13245.6	gi|336253063|ref|YP_004596170.1|	-	0.0077	16.6	0.0	0.0085	16.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|336253063|ref|YP_004596170.1|	-	0.008	16.6	0.0	0.18	12.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|336253063|ref|YP_004596170.1|	-	0.0088	16.1	0.0	0.011	15.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336253063|ref|YP_004596170.1|	-	0.011	15.6	0.0	0.022	14.7	0.0	1.4	1	1	0	1	1	1	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|336253063|ref|YP_004596170.1|	-	0.012	15.7	0.0	0.018	15.1	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.22	gi|336253063|ref|YP_004596170.1|	-	0.016	15.6	0.0	0.023	15.1	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
Thymidylate_kin	PF02223.17	gi|336253063|ref|YP_004596170.1|	-	0.018	14.8	0.0	0.27	10.9	0.0	2.1	2	0	0	2	2	2	0	Thymidylate	kinase
ABC_tran	PF00005.27	gi|336253063|ref|YP_004596170.1|	-	0.022	15.3	0.0	0.025	15.1	0.0	1.4	1	1	0	1	1	1	0	ABC	transporter
RuvB_N	PF05496.12	gi|336253063|ref|YP_004596170.1|	-	0.022	14.5	0.0	0.076	12.8	0.0	1.8	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ATP_bind_1	PF03029.17	gi|336253063|ref|YP_004596170.1|	-	0.022	14.5	0.0	0.038	13.8	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.14	gi|336253063|ref|YP_004596170.1|	-	0.03	14.2	0.0	0.089	12.7	0.0	1.8	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.21	gi|336253063|ref|YP_004596170.1|	-	0.034	13.5	0.0	0.052	12.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
TsaE	PF02367.17	gi|336253063|ref|YP_004596170.1|	-	0.035	14.1	0.0	0.055	13.5	0.0	1.5	1	1	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Lactamase_B_2	PF12706.7	gi|336253063|ref|YP_004596170.1|	-	0.047	13.2	0.1	0.082	12.4	0.1	1.4	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
AAA_24	PF13479.6	gi|336253063|ref|YP_004596170.1|	-	0.049	13.4	0.0	0.07	12.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|336253063|ref|YP_004596170.1|	-	0.054	13.4	0.0	0.054	13.4	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_25	PF13481.6	gi|336253063|ref|YP_004596170.1|	-	0.066	12.8	0.1	0.1	12.2	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|336253063|ref|YP_004596170.1|	-	0.067	13.1	0.0	0.095	12.6	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
IstB_IS21	PF01695.17	gi|336253063|ref|YP_004596170.1|	-	0.088	12.5	0.0	0.3	10.8	0.1	1.9	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|336253063|ref|YP_004596170.1|	-	0.097	12.2	0.0	0.47	9.9	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
T2SSE	PF00437.20	gi|336253063|ref|YP_004596170.1|	-	0.1	11.7	0.0	0.14	11.1	0.0	1.5	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
NB-ARC	PF00931.22	gi|336253063|ref|YP_004596170.1|	-	0.11	11.7	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.6	gi|336253063|ref|YP_004596170.1|	-	0.11	13.0	0.0	0.21	12.0	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
Guanylate_kin	PF00625.21	gi|336253063|ref|YP_004596170.1|	-	0.11	12.1	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	1	0	Guanylate	kinase
MeaB	PF03308.16	gi|336253063|ref|YP_004596170.1|	-	0.12	11.3	0.0	0.17	10.8	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Rad17	PF03215.15	gi|336253063|ref|YP_004596170.1|	-	0.13	12.2	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
Roc	PF08477.13	gi|336253063|ref|YP_004596170.1|	-	0.2	11.9	0.0	0.38	11.0	0.0	1.5	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRP54	PF00448.22	gi|336253063|ref|YP_004596170.1|	-	0.21	11.2	0.0	0.61	9.7	0.0	1.7	1	1	1	2	2	2	0	SRP54-type	protein,	GTPase	domain
TAT_signal	PF10518.9	gi|336253064|ref|YP_004596171.1|	-	0.2	11.5	2.7	0.37	10.7	2.7	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MR_MLE_C	PF13378.6	gi|336253065|ref|YP_004596172.1|	-	2e-42	145.2	0.2	2.9e-42	144.7	0.2	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336253065|ref|YP_004596172.1|	-	1.6e-12	47.7	0.0	2.6e-12	47.0	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MAAL_C	PF07476.11	gi|336253065|ref|YP_004596172.1|	-	0.0012	18.0	0.0	0.0021	17.3	0.0	1.3	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
Enolase_N	PF03952.16	gi|336253065|ref|YP_004596172.1|	-	0.047	13.9	0.0	0.11	12.7	0.0	1.5	1	1	0	1	1	1	0	Enolase,	N-terminal	domain
HMGL-like	PF00682.19	gi|336253065|ref|YP_004596172.1|	-	0.1	12.1	0.1	0.98	8.9	0.0	2.2	3	0	0	3	3	3	0	HMGL-like
DUF1611	PF07755.11	gi|336253066|ref|YP_004596173.1|	-	7.7e-72	240.8	0.2	1.1e-71	240.3	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
DUF1611_N	PF17396.2	gi|336253066|ref|YP_004596173.1|	-	4.4e-31	107.0	0.0	8e-30	102.9	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
acVLRF1	PF18859.1	gi|336253067|ref|YP_004596174.1|	-	6.6e-36	123.5	1.4	6.6e-36	123.5	1.4	2.5	2	1	0	2	2	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|336253067|ref|YP_004596174.1|	-	7.8e-08	32.7	0.3	7.8e-08	32.7	0.3	2.1	2	1	0	2	2	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_2	PF03464.15	gi|336253067|ref|YP_004596174.1|	-	4.4e-06	27.0	0.1	8.9e-05	22.8	0.0	2.2	2	0	0	2	2	2	1	eRF1	domain	2
ERM	PF00769.19	gi|336253067|ref|YP_004596174.1|	-	0.0022	17.9	5.7	0.0022	17.9	5.7	1.5	2	0	0	2	2	2	1	Ezrin/radixin/moesin	family
DUF1192	PF06698.11	gi|336253067|ref|YP_004596174.1|	-	0.0038	17.3	16.5	0.075	13.1	8.0	3.5	2	1	0	3	3	3	2	Protein	of	unknown	function	(DUF1192)
DUF3450	PF11932.8	gi|336253067|ref|YP_004596174.1|	-	0.0046	16.3	4.2	0.0046	16.3	4.2	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3450)
Taxilin	PF09728.9	gi|336253067|ref|YP_004596174.1|	-	0.0053	16.0	3.2	0.0088	15.3	3.2	1.2	1	0	0	1	1	1	1	Myosin-like	coiled-coil	protein
GAS	PF13851.6	gi|336253067|ref|YP_004596174.1|	-	0.0069	15.8	1.5	0.029	13.7	1.2	1.9	2	0	0	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
TPR_MLP1_2	PF07926.12	gi|336253067|ref|YP_004596174.1|	-	0.0094	16.0	6.3	0.0094	16.0	6.3	1.9	2	0	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
Tropomyosin	PF00261.20	gi|336253067|ref|YP_004596174.1|	-	0.011	15.1	10.2	0.011	15.1	10.2	2.0	2	1	0	2	2	2	0	Tropomyosin
DUF1664	PF07889.12	gi|336253067|ref|YP_004596174.1|	-	0.026	14.6	2.7	0.037	14.1	1.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
ADIP	PF11559.8	gi|336253067|ref|YP_004596174.1|	-	0.032	14.3	3.4	0.054	13.6	3.4	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
YlqD	PF11068.8	gi|336253067|ref|YP_004596174.1|	-	0.037	14.4	0.7	0.072	13.5	0.7	1.4	1	0	0	1	1	1	0	YlqD	protein
AAA_13	PF13166.6	gi|336253067|ref|YP_004596174.1|	-	0.037	12.7	0.4	0.05	12.3	0.4	1.2	1	0	0	1	1	1	0	AAA	domain
Cep57_MT_bd	PF06657.13	gi|336253067|ref|YP_004596174.1|	-	0.064	13.7	7.2	3	8.4	2.3	2.6	1	1	1	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
ATG16	PF08614.11	gi|336253067|ref|YP_004596174.1|	-	0.089	13.0	9.2	0.16	12.2	9.2	1.4	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
FapA	PF03961.13	gi|336253067|ref|YP_004596174.1|	-	0.11	11.0	2.0	0.093	11.3	0.9	1.3	2	0	0	2	2	1	0	Flagellar	Assembly	Protein	A
DUF724	PF05266.14	gi|336253067|ref|YP_004596174.1|	-	0.11	12.3	0.4	0.19	11.6	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
TraF_2	PF13729.6	gi|336253067|ref|YP_004596174.1|	-	0.14	11.5	10.5	0.11	11.9	3.3	2.3	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
Atg14	PF10186.9	gi|336253067|ref|YP_004596174.1|	-	0.16	11.0	1.6	0.27	10.3	1.6	1.4	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
EzrA	PF06160.12	gi|336253067|ref|YP_004596174.1|	-	0.17	10.1	3.4	0.099	10.8	1.4	1.5	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
Dynamitin	PF04912.14	gi|336253067|ref|YP_004596174.1|	-	0.17	11.1	5.3	0.11	11.9	3.2	1.5	2	0	0	2	2	2	0	Dynamitin
Spc7	PF08317.11	gi|336253067|ref|YP_004596174.1|	-	0.2	10.5	4.8	0.34	9.7	4.8	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
PDCD7	PF16021.5	gi|336253067|ref|YP_004596174.1|	-	0.21	10.7	6.4	0.37	9.8	6.4	1.3	1	0	0	1	1	1	0	Programmed	cell	death	protein	7
HSP70	PF00012.20	gi|336253067|ref|YP_004596174.1|	-	0.21	9.7	1.9	1.9	6.6	1.3	2.0	2	0	0	2	2	2	0	Hsp70	protein
Golgin_A5	PF09787.9	gi|336253067|ref|YP_004596174.1|	-	0.24	10.8	5.2	0.42	10.0	5.2	1.4	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
DUF1515	PF07439.11	gi|336253067|ref|YP_004596174.1|	-	0.25	11.4	3.1	0.63	10.1	3.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
bZIP_2	PF07716.15	gi|336253067|ref|YP_004596174.1|	-	0.34	11.0	19.1	0.11	12.6	2.4	3.1	3	0	0	3	3	2	0	Basic	region	leucine	zipper
TMF_DNA_bd	PF12329.8	gi|336253067|ref|YP_004596174.1|	-	0.4	10.7	7.5	7.1	6.7	6.8	2.4	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin	PF02996.17	gi|336253067|ref|YP_004596174.1|	-	0.43	10.5	6.9	9.4	6.2	0.9	3.7	3	1	1	4	4	4	0	Prefoldin	subunit
Nup188_C	PF18378.1	gi|336253067|ref|YP_004596174.1|	-	0.58	8.9	4.5	0.85	8.4	4.5	1.2	1	0	0	1	1	1	0	Nuclear	pore	protein	NUP188	C-terminal	domain
Ax_dynein_light	PF10211.9	gi|336253067|ref|YP_004596174.1|	-	0.6	10.0	6.0	1.2	9.1	6.0	1.4	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
APG6_N	PF17675.1	gi|336253067|ref|YP_004596174.1|	-	1	9.9	17.2	1.8	9.1	13.5	2.5	2	1	0	2	2	2	0	Apg6	coiled-coil	region
Tropomyosin_1	PF12718.7	gi|336253067|ref|YP_004596174.1|	-	1.4	9.1	18.5	2.5	8.2	14.4	2.3	2	1	0	2	2	2	0	Tropomyosin	like
LPP	PF04728.13	gi|336253067|ref|YP_004596174.1|	-	1.4	9.4	5.4	16	6.0	0.1	2.7	1	1	1	2	2	2	0	Lipoprotein	leucine-zipper
TSC22	PF01166.18	gi|336253067|ref|YP_004596174.1|	-	2.6	8.4	5.4	15	6.0	0.4	2.5	2	0	0	2	2	2	0	TSC-22/dip/bun	family
HAUS5	PF14817.6	gi|336253067|ref|YP_004596174.1|	-	2.8	6.6	6.8	4.1	6.0	6.8	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	5
Spc24	PF08286.11	gi|336253067|ref|YP_004596174.1|	-	3.5	7.9	5.9	3.9	7.8	1.5	2.4	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
Fmp27_WPPW	PF10359.9	gi|336253067|ref|YP_004596174.1|	-	4.6	6.0	5.4	1.5	7.6	2.4	1.6	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
Phage_Mu_Gam	PF07352.12	gi|336253067|ref|YP_004596174.1|	-	4.8	7.1	10.1	2.1	8.2	6.5	2.2	2	1	0	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
DivIC	PF04977.15	gi|336253067|ref|YP_004596174.1|	-	5.8	6.8	11.9	22	4.9	3.3	2.8	1	1	1	2	2	2	0	Septum	formation	initiator
OmpH	PF03938.14	gi|336253067|ref|YP_004596174.1|	-	5.9	7.2	7.1	0.96	9.8	3.5	1.5	2	0	0	2	2	1	0	Outer	membrane	protein	(OmpH-like)
DUF4140	PF13600.6	gi|336253067|ref|YP_004596174.1|	-	7.4	7.1	16.6	17	5.9	4.3	3.5	2	1	2	4	4	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
FUSC	PF04632.12	gi|336253067|ref|YP_004596174.1|	-	7.8	4.9	8.8	1.4	7.4	5.2	1.5	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
DUF883	PF05957.13	gi|336253067|ref|YP_004596174.1|	-	8.2	7.1	15.7	23	5.7	0.1	3.0	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
PSD2	PF07624.11	gi|336253068|ref|YP_004596175.1|	-	0.11	12.3	0.0	8	6.3	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1585)
Collagen	PF01391.18	gi|336253069|ref|YP_004596176.1|	-	0.014	15.2	30.1	0.014	15.2	30.1	4.5	2	1	2	4	4	4	0	Collagen	triple	helix	repeat	(20	copies)
DUF4349	PF14257.6	gi|336253069|ref|YP_004596176.1|	-	0.016	14.7	4.4	0.032	13.7	4.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
PilJ	PF13675.6	gi|336253069|ref|YP_004596176.1|	-	0.055	13.5	1.8	0.1	12.6	1.8	1.5	1	0	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
SlyX	PF04102.12	gi|336253069|ref|YP_004596176.1|	-	0.089	13.4	2.3	0.4	11.3	2.3	2.3	1	0	0	1	1	1	0	SlyX
FUSC	PF04632.12	gi|336253069|ref|YP_004596176.1|	-	0.13	10.8	3.6	0.17	10.4	3.6	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
ABC_tran_CTD	PF16326.5	gi|336253069|ref|YP_004596176.1|	-	0.14	12.4	4.4	0.2	11.9	3.2	1.7	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
CENP-F_leu_zip	PF10473.9	gi|336253069|ref|YP_004596176.1|	-	0.15	12.1	1.9	0.2	11.6	1.9	1.2	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
PRKG1_interact	PF15898.5	gi|336253069|ref|YP_004596176.1|	-	0.24	12.3	3.3	0.38	11.7	3.3	1.3	1	0	0	1	1	1	0	cGMP-dependent	protein	kinase	interacting	domain
Spc7	PF08317.11	gi|336253069|ref|YP_004596176.1|	-	0.37	9.6	2.2	0.51	9.2	2.2	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
CLZ	PF16526.5	gi|336253069|ref|YP_004596176.1|	-	1.1	9.6	3.4	2.4	8.6	2.9	1.8	1	1	0	1	1	1	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
HTH_5	PF01022.20	gi|336253070|ref|YP_004596177.1|	-	7.7e-21	73.7	0.2	5e-17	61.5	0.1	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|336253070|ref|YP_004596177.1|	-	3.4e-15	55.8	1.8	4.5e-12	45.8	0.3	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336253070|ref|YP_004596177.1|	-	3.6e-14	52.4	0.2	6.8e-06	25.9	0.0	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336253070|ref|YP_004596177.1|	-	5.2e-13	48.7	0.6	2.7e-07	30.3	0.1	2.4	2	0	0	2	2	2	2	MarR	family
HTH_24	PF13412.6	gi|336253070|ref|YP_004596177.1|	-	2.5e-09	36.5	0.6	5.1e-07	29.1	0.3	3.0	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|336253070|ref|YP_004596177.1|	-	4e-09	36.3	0.4	0.00011	22.0	0.1	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|336253070|ref|YP_004596177.1|	-	5.8e-09	35.8	0.1	2.5e-06	27.3	0.0	2.4	2	0	0	2	2	2	1	MarR	family
Rrf2	PF02082.20	gi|336253070|ref|YP_004596177.1|	-	6e-07	29.7	0.0	0.0069	16.7	0.0	2.5	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|336253070|ref|YP_004596177.1|	-	1.2e-06	28.2	1.5	0.024	14.4	0.1	3.1	3	1	0	3	3	2	2	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336253070|ref|YP_004596177.1|	-	3.4e-06	27.1	0.0	0.00014	22.0	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DprA_WH	PF17782.1	gi|336253070|ref|YP_004596177.1|	-	1.4e-05	25.1	3.0	0.00025	21.1	0.0	3.0	3	1	0	3	3	2	1	DprA	winged	helix	domain
HTH_27	PF13463.6	gi|336253070|ref|YP_004596177.1|	-	2.6e-05	24.6	0.3	0.00066	20.1	0.1	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|336253070|ref|YP_004596177.1|	-	3.5e-05	23.7	0.0	8.9e-05	22.4	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
DUF742	PF05331.11	gi|336253070|ref|YP_004596177.1|	-	4.7e-05	23.2	0.0	0.11	12.3	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF742)
PadR	PF03551.14	gi|336253070|ref|YP_004596177.1|	-	5.9e-05	22.9	0.4	0.0024	17.8	0.0	3.3	3	1	0	3	3	3	1	Transcriptional	regulator	PadR-like	family
GntR	PF00392.21	gi|336253070|ref|YP_004596177.1|	-	0.0002	21.0	0.2	0.26	11.0	0.0	2.9	2	1	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.9	gi|336253070|ref|YP_004596177.1|	-	0.00041	20.4	0.1	0.1	12.7	0.0	2.4	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_10	PF04967.12	gi|336253070|ref|YP_004596177.1|	-	0.0015	18.3	0.0	0.0052	16.6	0.0	1.9	1	0	0	1	1	1	1	HTH	DNA	binding	domain
LexA_DNA_bind	PF01726.16	gi|336253070|ref|YP_004596177.1|	-	0.0016	18.2	0.0	0.012	15.4	0.0	2.3	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_CodY	PF08222.11	gi|336253070|ref|YP_004596177.1|	-	0.0016	17.9	0.0	0.0038	16.7	0.0	1.6	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HxlR	PF01638.17	gi|336253070|ref|YP_004596177.1|	-	0.0029	17.4	0.0	0.065	13.1	0.0	2.3	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
DDRGK	PF09756.9	gi|336253070|ref|YP_004596177.1|	-	0.0049	16.5	0.0	0.011	15.4	0.0	1.5	2	0	0	2	2	1	1	DDRGK	domain
HTH_AsnC-type	PF13404.6	gi|336253070|ref|YP_004596177.1|	-	0.005	16.6	0.2	0.036	13.9	0.2	2.5	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
FeoC	PF09012.10	gi|336253070|ref|YP_004596177.1|	-	0.0051	16.8	0.0	0.82	9.8	0.0	2.5	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
IF2_N	PF04760.15	gi|336253070|ref|YP_004596177.1|	-	0.0055	16.5	0.0	0.49	10.3	0.0	2.6	2	0	0	2	2	2	1	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_1	PF00126.27	gi|336253070|ref|YP_004596177.1|	-	0.014	15.3	2.0	2.2	8.3	0.0	2.7	3	0	0	3	3	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_36	PF13730.6	gi|336253070|ref|YP_004596177.1|	-	0.016	15.1	0.0	0.033	14.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2513	PF10711.9	gi|336253070|ref|YP_004596177.1|	-	0.017	15.4	0.2	0.1	12.9	0.0	2.2	2	0	0	2	2	2	0	Hypothetical	protein	(DUF2513)
Cdc6_C	PF09079.11	gi|336253070|ref|YP_004596177.1|	-	0.019	14.9	0.0	0.48	10.4	0.0	2.5	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
SMC_ScpB	PF04079.16	gi|336253070|ref|YP_004596177.1|	-	0.027	14.1	0.1	3.2	7.4	0.0	2.3	2	0	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_45	PF14947.6	gi|336253070|ref|YP_004596177.1|	-	0.039	13.9	0.0	4.4	7.4	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix
ArsR	PF09824.9	gi|336253070|ref|YP_004596177.1|	-	0.055	13.1	0.0	0.3	10.7	0.0	2.1	2	1	0	2	2	2	0	ArsR	transcriptional	regulator
RP-C	PF03428.13	gi|336253070|ref|YP_004596177.1|	-	0.06	13.0	0.0	0.25	11.0	0.0	2.0	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
HTH_DeoR	PF08220.12	gi|336253070|ref|YP_004596177.1|	-	0.065	13.0	0.0	0.21	11.4	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
GPP34	PF05719.11	gi|336253070|ref|YP_004596177.1|	-	0.075	13.1	0.8	0.19	11.8	0.2	2.0	1	1	1	2	2	2	0	Golgi	phosphoprotein	3	(GPP34)
HTH_38	PF13936.6	gi|336253070|ref|YP_004596177.1|	-	0.077	12.8	0.1	0.23	11.2	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|336253070|ref|YP_004596177.1|	-	0.082	13.1	0.0	0.39	10.9	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_47	PF16221.5	gi|336253070|ref|YP_004596177.1|	-	0.11	12.1	0.0	4.5	6.9	0.0	2.4	2	0	0	2	2	2	0	winged	helix-turn-helix
FaeA	PF04703.12	gi|336253070|ref|YP_004596177.1|	-	0.16	12.4	0.1	0.41	11.1	0.0	1.7	2	0	0	2	2	1	0	FaeA-like	protein
TetR_C_11	PF16859.5	gi|336253070|ref|YP_004596177.1|	-	0.16	12.3	1.5	0.2	12.0	0.1	1.8	2	0	0	2	2	1	0	Tetracyclin	repressor-like,	C-terminal	domain
BLACT_WH	PF17778.1	gi|336253070|ref|YP_004596177.1|	-	0.37	10.8	7.6	0.51	10.4	0.3	3.0	4	0	0	4	4	2	0	Beta-lactamase	associated	winged	helix	domain
DUF2062	PF09835.9	gi|336253071|ref|YP_004596178.1|	-	0.039	13.8	2.7	0.29	11.0	0.1	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
DUF456	PF04306.13	gi|336253071|ref|YP_004596178.1|	-	0.49	10.7	16.0	0.26	11.6	12.8	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF456)
DUF202	PF02656.15	gi|336253072|ref|YP_004596179.1|	-	0.87	10.1	6.6	2.3	8.7	6.6	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Asparaginase	PF00710.20	gi|336253073|ref|YP_004596180.1|	-	4.3e-59	199.3	0.2	1.3e-58	197.8	0.2	1.7	2	0	0	2	2	2	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|336253073|ref|YP_004596180.1|	-	1.7e-26	92.7	0.0	1.2e-25	89.9	0.0	2.1	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|336253073|ref|YP_004596180.1|	-	1e-17	63.2	0.0	1.8e-17	62.4	0.0	1.4	1	0	0	1	1	1	1	GatD	N-terminal	domain
Acetyltransf_1	PF00583.25	gi|336253074|ref|YP_004596181.1|	-	4.4e-10	39.8	0.6	5.4e-09	36.3	0.1	2.3	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|336253074|ref|YP_004596181.1|	-	5.3e-05	23.3	0.4	0.11	12.6	0.0	2.9	3	0	0	3	3	3	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336253074|ref|YP_004596181.1|	-	0.00025	21.1	0.1	0.00064	19.8	0.1	1.7	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
PknH_C	PF14032.6	gi|336253074|ref|YP_004596181.1|	-	0.00059	19.7	1.4	0.0012	18.8	1.4	1.5	1	0	0	1	1	1	1	PknH-like	extracellular	domain
Acetyltransf_7	PF13508.7	gi|336253074|ref|YP_004596181.1|	-	0.00092	19.6	0.0	0.002	18.5	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336253074|ref|YP_004596181.1|	-	0.0023	18.6	0.6	0.0023	18.6	0.6	2.4	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336253074|ref|YP_004596181.1|	-	0.0024	17.8	0.0	0.013	15.4	0.0	2.1	3	0	0	3	3	3	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|336253074|ref|YP_004596181.1|	-	0.014	15.1	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
FoP_duplication	PF13865.6	gi|336253074|ref|YP_004596181.1|	-	0.04	14.5	0.1	0.097	13.2	0.1	1.7	1	1	0	1	1	1	0	C-terminal	duplication	domain	of	Friend	of	PRMT1
DUF883	PF05957.13	gi|336253074|ref|YP_004596181.1|	-	0.083	13.5	0.0	0.26	11.9	0.0	1.8	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
Acetyltransf_4	PF13420.7	gi|336253074|ref|YP_004596181.1|	-	0.16	12.1	0.0	1.6	8.8	0.0	2.0	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
ThiS	PF02597.20	gi|336253075|ref|YP_004596182.1|	-	3.2e-19	69.3	0.5	3.6e-19	69.2	0.5	1.0	1	0	0	1	1	1	1	ThiS	family
Flagellin_IN	PF07196.13	gi|336253075|ref|YP_004596182.1|	-	0.027	14.6	1.6	0.54	10.5	0.4	2.1	2	0	0	2	2	2	0	Flagellin	hook	IN	motif
TrkA_C	PF02080.21	gi|336253076|ref|YP_004596183.1|	-	1.3e-06	28.2	0.5	1.9e-05	24.4	0.1	2.5	2	0	0	2	2	2	1	TrkA-C	domain
PDZ_6	PF17820.1	gi|336253076|ref|YP_004596183.1|	-	0.071	13.0	0.1	0.84	9.5	0.1	2.5	2	0	0	2	2	2	0	PDZ	domain
TrkA_C	PF02080.21	gi|336253077|ref|YP_004596184.1|	-	0.0049	16.7	0.3	0.038	13.8	0.1	2.5	2	0	0	2	2	2	1	TrkA-C	domain
5TM-5TMR_LYT	PF07694.12	gi|336253077|ref|YP_004596184.1|	-	0.079	12.5	9.3	0.13	11.8	9.3	1.2	1	0	0	1	1	1	0	5TMR	of	5TMR-LYT
TrkA_N	PF02254.18	gi|336253078|ref|YP_004596185.1|	-	1.9e-26	92.6	0.9	3.1e-26	91.9	0.9	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|336253078|ref|YP_004596185.1|	-	1.1e-12	47.8	3.7	1.1e-12	47.8	3.7	2.4	2	0	0	2	2	2	1	Ion	channel
Ion_trans	PF00520.31	gi|336253078|ref|YP_004596185.1|	-	0.00012	21.4	0.4	0.0002	20.7	0.4	1.4	1	0	0	1	1	1	1	Ion	transport	protein
IRK	PF01007.20	gi|336253078|ref|YP_004596185.1|	-	0.013	15.3	0.1	0.024	14.4	0.1	1.3	1	0	0	1	1	1	0	Inward	rectifier	potassium	channel	transmembrane	domain
NTP_transf_3	PF12804.7	gi|336253078|ref|YP_004596185.1|	-	0.048	14.0	0.8	0.12	12.7	0.8	1.6	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
HPP	PF04982.13	gi|336253079|ref|YP_004596186.1|	-	3.7e-17	62.6	3.6	7.2e-17	61.7	3.6	1.5	1	0	0	1	1	1	1	HPP	family
Usp	PF00582.26	gi|336253079|ref|YP_004596186.1|	-	6.9e-06	26.6	0.5	0.00072	20.1	0.1	2.8	3	0	0	3	3	3	2	Universal	stress	protein	family
HalOD1	PF18545.1	gi|336253080|ref|YP_004596187.1|	-	2.6e-16	59.6	0.4	3.1e-16	59.4	0.4	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
TrmB	PF01978.19	gi|336253081|ref|YP_004596188.1|	-	7.3e-20	70.6	0.2	3e-19	68.7	0.0	2.2	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|336253081|ref|YP_004596188.1|	-	9e-05	21.8	0.1	0.00012	21.4	0.1	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336253081|ref|YP_004596188.1|	-	0.002	18.2	1.1	0.015	15.4	0.1	2.9	3	1	0	3	3	3	1	Helix-turn-helix	domain
E2F_TDP	PF02319.20	gi|336253081|ref|YP_004596188.1|	-	0.0023	17.9	0.0	0.0055	16.7	0.0	1.7	1	1	0	1	1	1	1	E2F/DP	family	winged-helix	DNA-binding	domain
MarR_2	PF12802.7	gi|336253081|ref|YP_004596188.1|	-	0.0032	17.3	0.5	0.035	14.0	0.1	2.6	3	0	0	3	3	3	1	MarR	family
HTH_IclR	PF09339.10	gi|336253081|ref|YP_004596188.1|	-	0.019	14.8	0.2	0.053	13.3	0.1	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|336253081|ref|YP_004596188.1|	-	0.065	13.2	0.0	0.19	11.7	0.0	1.8	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
PadR	PF03551.14	gi|336253081|ref|YP_004596188.1|	-	0.11	12.5	0.0	0.47	10.4	0.0	2.1	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.7	gi|336253082|ref|YP_004596189.1|	-	0.0036	17.3	0.2	0.013	15.5	0.2	1.9	1	1	0	1	1	1	1	Helix-turn-helix	domain
DeoC	PF01791.9	gi|336253083|ref|YP_004596190.1|	-	5.8e-09	35.9	1.3	7.7e-09	35.5	1.3	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
CRA_rpt	PF07046.11	gi|336253083|ref|YP_004596190.1|	-	0.019	15.1	2.9	0.048	13.8	2.9	1.6	1	0	0	1	1	1	0	Cytoplasmic	repetitive	antigen	(CRA)	like	repeat
IF-2B	PF01008.17	gi|336253084|ref|YP_004596191.1|	-	3.3e-75	252.9	0.1	3.8e-75	252.7	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
PEP-utilizers	PF00391.23	gi|336253084|ref|YP_004596191.1|	-	0.01	15.5	0.6	2.2	8.1	0.3	3.5	2	1	1	3	3	3	0	PEP-utilising	enzyme,	mobile	domain
DUF2849	PF11011.8	gi|336253084|ref|YP_004596191.1|	-	0.019	15.6	7.4	5	7.9	3.6	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2849)
PRP4	PF08799.11	gi|336253084|ref|YP_004596191.1|	-	0.16	11.5	2.3	0.82	9.3	0.1	3.0	3	0	0	3	3	3	0	pre-mRNA	processing	factor	4	(PRP4)	like
BtrH_N	PF14399.6	gi|336253084|ref|YP_004596191.1|	-	0.2	11.9	0.3	3.1	8.0	0.0	2.5	3	0	0	3	3	3	0	Butirosin	biosynthesis	protein	H,	N-terminal
DUF63	PF01889.17	gi|336253085|ref|YP_004596192.1|	-	2.2e-17	64.2	8.5	2.8e-17	63.8	8.5	1.1	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
Phage_Coat_Gp8	PF05371.12	gi|336253085|ref|YP_004596192.1|	-	0.21	11.4	0.2	0.21	11.4	0.2	2.9	3	0	0	3	3	3	0	Phage	major	coat	protein,	Gp8
PfkB	PF00294.24	gi|336253086|ref|YP_004596193.1|	-	9.9e-50	169.5	4.8	1.3e-49	169.2	4.8	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
HalOD1	PF18545.1	gi|336253087|ref|YP_004596194.1|	-	2.1e-20	72.7	2.2	2.8e-20	72.4	2.2	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
PNP_UDP_1	PF01048.20	gi|336253088|ref|YP_004596195.1|	-	1.9e-47	161.5	2.4	2.3e-47	161.2	2.4	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Fzo_mitofusin	PF04799.13	gi|336253089|ref|YP_004596196.1|	-	0.0046	16.5	1.8	0.0046	16.5	1.8	1.1	1	0	0	1	1	1	1	fzo-like	conserved	region
DZR	PF12773.7	gi|336253091|ref|YP_004596198.1|	-	0.0013	18.7	2.6	0.21	11.6	0.3	2.4	2	1	0	2	2	2	2	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336253091|ref|YP_004596198.1|	-	0.064	12.7	3.1	0.92	9.0	0.0	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|336253091|ref|YP_004596198.1|	-	0.55	10.1	6.4	0.32	10.9	0.6	2.7	3	0	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
RecR	PF02132.15	gi|336253091|ref|YP_004596198.1|	-	4.9	6.8	10.9	3.4	7.3	3.9	3.3	3	0	0	3	3	3	0	RecR	protein
Prok-RING_4	PF14447.6	gi|336253091|ref|YP_004596198.1|	-	8.8	6.3	8.3	1.6	8.7	0.7	2.5	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	4
DUF1508	PF07411.12	gi|336253092|ref|YP_004596199.1|	-	2.1e-18	65.9	0.1	3.4e-18	65.2	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
DUF547	PF04784.14	gi|336253093|ref|YP_004596200.1|	-	3.5e-23	82.0	0.0	4.6e-23	81.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF547
AI-2E_transport	PF01594.16	gi|336253094|ref|YP_004596201.1|	-	2.3e-48	165.0	28.1	2.9e-48	164.7	28.1	1.0	1	0	0	1	1	1	1	AI-2E	family	transporter
CrgA	PF06781.12	gi|336253094|ref|YP_004596201.1|	-	1.3	9.1	0.0	1.3	9.1	0.0	3.1	3	0	0	3	3	3	0	Cell	division	protein	CrgA
SUR7	PF06687.12	gi|336253094|ref|YP_004596201.1|	-	9.1	5.8	12.6	3.4	7.3	0.8	2.5	1	1	1	2	2	2	0	SUR7/PalI	family
DUF4350	PF14258.6	gi|336253095|ref|YP_004596202.1|	-	0.00014	22.2	3.2	0.003	18.0	0.2	2.6	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF4350)
ABC_transp_aux	PF09822.9	gi|336253095|ref|YP_004596202.1|	-	0.017	14.6	0.0	0.028	13.9	0.0	1.6	1	1	0	1	1	1	0	ABC-type	uncharacterized	transport	system
Peptidase_S49	PF01343.18	gi|336253096|ref|YP_004596203.1|	-	1.2e-17	64.3	1.0	3e-10	40.2	0.4	2.3	2	0	0	2	2	2	2	Peptidase	family	S49
CLP_protease	PF00574.23	gi|336253096|ref|YP_004596203.1|	-	1.8e-07	31.2	0.4	1e-05	25.5	0.4	2.3	1	1	0	1	1	1	1	Clp	protease
ECH_1	PF00378.20	gi|336253096|ref|YP_004596203.1|	-	0.038	13.3	0.1	6	6.1	0.0	2.4	2	0	0	2	2	2	0	Enoyl-CoA	hydratase/isomerase
OKR_DC_1_N	PF03709.15	gi|336253096|ref|YP_004596203.1|	-	0.052	13.8	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
DUF2884	PF11101.8	gi|336253096|ref|YP_004596203.1|	-	0.14	11.7	0.2	0.23	10.9	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2884)
Radical_SAM	PF04055.21	gi|336253097|ref|YP_004596204.1|	-	7.8e-17	62.2	0.6	1.7e-16	61.0	0.2	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
MCPsignal	PF00015.21	gi|336253098|ref|YP_004596205.1|	-	3.5e-40	137.6	56.1	2.5e-39	134.8	24.3	5.3	2	1	4	6	6	6	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
dCache_1	PF02743.18	gi|336253098|ref|YP_004596205.1|	-	6.5e-07	29.4	2.4	6.5e-07	29.4	2.4	3.2	3	2	1	4	4	2	1	Cache	domain
Laminin_II	PF06009.12	gi|336253098|ref|YP_004596205.1|	-	3.8e-06	27.0	31.2	0.0018	18.3	2.8	5.3	3	2	2	5	5	5	2	Laminin	Domain	II
DUF948	PF06103.11	gi|336253098|ref|YP_004596205.1|	-	3.6e-05	23.9	36.4	0.022	15.0	2.6	6.7	2	2	2	4	4	4	1	Bacterial	protein	of	unknown	function	(DUF948)
Med30	PF11315.8	gi|336253098|ref|YP_004596205.1|	-	0.00079	19.6	10.6	0.13	12.5	0.2	3.5	3	1	0	3	3	3	1	Mediator	complex	subunit	30
CENP-F_leu_zip	PF10473.9	gi|336253098|ref|YP_004596205.1|	-	0.0018	18.3	4.7	0.0018	18.3	4.7	4.9	2	2	2	4	4	4	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
RPW8	PF05659.11	gi|336253098|ref|YP_004596205.1|	-	0.0018	17.9	10.6	0.61	9.8	0.0	5.2	3	2	2	5	5	5	1	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DUF1664	PF07889.12	gi|336253098|ref|YP_004596205.1|	-	0.0022	18.0	28.6	0.48	10.5	1.7	5.5	3	2	2	5	5	5	3	Protein	of	unknown	function	(DUF1664)
CALCOCO1	PF07888.11	gi|336253098|ref|YP_004596205.1|	-	0.0033	16.4	17.9	0.0033	16.4	17.9	2.9	1	1	2	3	3	3	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Laminin_I	PF06008.14	gi|336253098|ref|YP_004596205.1|	-	0.0046	16.7	27.7	0.34	10.6	0.2	4.6	3	2	1	4	4	4	2	Laminin	Domain	I
HAMP	PF00672.25	gi|336253098|ref|YP_004596205.1|	-	0.0082	16.5	0.8	0.0082	16.5	0.8	6.4	6	2	1	7	7	4	2	HAMP	domain
NPV_P10	PF05531.12	gi|336253098|ref|YP_004596205.1|	-	0.0096	16.4	24.8	0.041	14.3	2.1	5.9	3	2	1	4	4	4	1	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.11	gi|336253098|ref|YP_004596205.1|	-	0.01	14.7	33.3	0.12	11.3	7.6	3.4	2	1	1	3	3	3	0	Spc7	kinetochore	protein
YabA	PF06156.13	gi|336253098|ref|YP_004596205.1|	-	0.022	15.4	16.7	3.3	8.4	0.1	5.4	3	2	3	6	6	6	0	Initiation	control	protein	YabA
Sec34	PF04136.15	gi|336253098|ref|YP_004596205.1|	-	0.026	14.4	14.4	1.2	9.0	0.5	5.2	3	2	4	7	7	7	0	Sec34-like	family
AAA_13	PF13166.6	gi|336253098|ref|YP_004596205.1|	-	0.038	12.7	30.5	0.15	10.7	11.3	2.3	1	1	1	2	2	2	0	AAA	domain
PI3K_P85_iSH2	PF16454.5	gi|336253098|ref|YP_004596205.1|	-	0.047	13.3	8.5	0.22	11.1	0.6	3.2	3	0	0	3	3	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
TSNAXIP1_N	PF15739.5	gi|336253098|ref|YP_004596205.1|	-	0.059	13.8	0.5	0.059	13.8	0.5	4.9	4	1	0	5	5	5	0	Translin-associated	factor	X-interacting	N-terminus
Antimicrobial24	PF16049.5	gi|336253098|ref|YP_004596205.1|	-	0.083	12.9	2.0	0.16	12.0	2.0	1.5	1	0	0	1	1	1	0	Frog	antimicrobial	peptide
Rootletin	PF15035.6	gi|336253098|ref|YP_004596205.1|	-	0.087	12.8	0.0	0.087	12.8	0.0	4.1	1	1	1	3	3	2	0	Ciliary	rootlet	component,	centrosome	cohesion
Ran-binding	PF05508.11	gi|336253098|ref|YP_004596205.1|	-	0.12	11.3	16.3	1.1	8.2	1.7	3.5	2	1	0	3	3	3	0	RanGTP-binding	protein
DUF2913	PF11140.8	gi|336253098|ref|YP_004596205.1|	-	0.12	12.1	2.4	0.17	11.6	0.2	2.4	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF2913)
DASH_Duo1	PF08651.10	gi|336253098|ref|YP_004596205.1|	-	0.16	11.8	7.7	24	4.8	0.0	5.6	5	1	1	6	6	6	0	DASH	complex	subunit	Duo1
HMMR_N	PF15905.5	gi|336253098|ref|YP_004596205.1|	-	0.17	11.3	28.9	1.2	8.5	2.7	4.3	2	2	3	5	5	5	0	Hyaluronan	mediated	motility	receptor	N-terminal
BLOC1_2	PF10046.9	gi|336253098|ref|YP_004596205.1|	-	0.23	11.8	32.9	0.049	13.9	2.0	6.7	3	3	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
bZIP_1	PF00170.21	gi|336253098|ref|YP_004596205.1|	-	0.43	10.7	0.1	0.43	10.7	0.1	3.5	4	0	0	4	4	2	0	bZIP	transcription	factor
DUF4200	PF13863.6	gi|336253098|ref|YP_004596205.1|	-	0.45	10.9	27.9	0.028	14.8	3.5	4.0	3	1	1	4	4	3	0	Domain	of	unknown	function	(DUF4200)
DUF2203	PF09969.9	gi|336253098|ref|YP_004596205.1|	-	0.46	11.2	30.1	2.6	8.8	1.6	5.6	2	1	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
TPR_MLP1_2	PF07926.12	gi|336253098|ref|YP_004596205.1|	-	0.65	10.1	40.8	0.75	9.9	3.6	4.8	3	1	1	4	4	4	0	TPR/MLP1/MLP2-like	protein
DASH_Dam1	PF08653.10	gi|336253098|ref|YP_004596205.1|	-	0.86	9.4	4.7	28	4.6	0.4	4.1	5	0	0	5	5	3	0	DASH	complex	subunit	Dam1
Baculo_PEP_C	PF04513.12	gi|336253098|ref|YP_004596205.1|	-	1.3	9.0	18.6	2.2	8.3	0.4	5.0	2	2	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AIP3	PF03915.13	gi|336253098|ref|YP_004596205.1|	-	1.4	7.9	23.7	3.7	6.5	10.4	3.1	1	1	1	2	2	2	0	Actin	interacting	protein	3
Mce4_CUP1	PF11887.8	gi|336253098|ref|YP_004596205.1|	-	1.6	8.1	20.1	0.51	9.7	2.2	3.6	1	1	2	4	4	4	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
TMPIT	PF07851.13	gi|336253098|ref|YP_004596205.1|	-	1.7	7.8	15.0	0.41	9.8	0.3	4.1	2	2	2	5	5	5	0	TMPIT-like	protein
Spectrin	PF00435.21	gi|336253098|ref|YP_004596205.1|	-	1.9	9.0	23.8	0.59	10.6	1.4	5.9	3	2	4	7	7	7	0	Spectrin	repeat
ApoLp-III	PF07464.11	gi|336253098|ref|YP_004596205.1|	-	1.9	8.6	31.2	0.18	11.9	0.8	4.4	3	2	1	4	4	4	0	Apolipophorin-III	precursor	(apoLp-III)
Fib_alpha	PF08702.10	gi|336253098|ref|YP_004596205.1|	-	2.1	8.5	16.4	4.8	7.4	1.4	4.8	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
Dor1	PF04124.12	gi|336253098|ref|YP_004596205.1|	-	3.1	6.4	14.8	3.7	6.1	1.4	3.7	2	1	1	3	3	3	0	Dor1-like	family
Occludin_ELL	PF07303.13	gi|336253098|ref|YP_004596205.1|	-	3.1	8.6	6.2	6.6	7.5	0.0	4.2	3	2	1	5	5	3	0	Occludin	homology	domain
Mod_r	PF07200.13	gi|336253098|ref|YP_004596205.1|	-	3.3	7.8	20.6	1.9	8.6	1.4	4.4	1	1	1	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
Seryl_tRNA_N	PF02403.22	gi|336253098|ref|YP_004596205.1|	-	4.7	7.5	30.6	1.7	8.9	1.4	5.5	3	2	3	6	6	6	0	Seryl-tRNA	synthetase	N-terminal	domain
Syntaxin	PF00804.25	gi|336253098|ref|YP_004596205.1|	-	4.8	6.8	22.5	2.5	7.7	1.7	4.9	2	2	2	5	5	5	0	Syntaxin
Fzo_mitofusin	PF04799.13	gi|336253098|ref|YP_004596205.1|	-	6.2	6.3	17.5	14	5.2	0.1	5.1	3	2	0	5	5	5	0	fzo-like	conserved	region
DUF812	PF05667.11	gi|336253098|ref|YP_004596205.1|	-	6.5	5.5	30.6	1.2	7.9	3.8	3.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF812)
SAICAR_synt	PF01259.18	gi|336253099|ref|YP_004596206.1|	-	8.9e-25	87.7	0.0	4.3e-24	85.5	0.0	1.8	1	1	0	1	1	1	1	SAICAR	synthetase
DUF4110	PF13422.6	gi|336253099|ref|YP_004596206.1|	-	0.031	14.4	0.0	0.066	13.3	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4110)
SPW	PF03779.14	gi|336253100|ref|YP_004596207.1|	-	0.00013	21.4	8.0	0.00013	21.4	8.0	3.3	3	2	0	3	3	3	1	SPW	repeat
Trp_oprn_chp	PF09534.10	gi|336253100|ref|YP_004596207.1|	-	3.1	7.5	25.0	1.1	9.0	7.2	2.8	1	1	2	3	3	3	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Fumarate_red_C	PF02300.17	gi|336253100|ref|YP_004596207.1|	-	5.4	7.1	7.5	12	6.0	0.5	3.0	2	2	0	2	2	2	0	Fumarate	reductase	subunit	C
DUF2267	PF10025.9	gi|336253101|ref|YP_004596208.1|	-	1.7e-29	102.6	1.2	1.9e-29	102.4	1.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
DUF2116	PF09889.9	gi|336253102|ref|YP_004596209.1|	-	0.016	15.1	0.8	1.4	9.0	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
YHS	PF04945.13	gi|336253102|ref|YP_004596209.1|	-	0.11	12.6	3.0	0.32	11.1	1.8	2.1	1	1	0	1	1	1	0	YHS	domain
Formyl_trans_N	PF00551.19	gi|336253104|ref|YP_004596211.1|	-	1.2e-43	148.9	0.0	1.8e-43	148.4	0.0	1.2	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.6	gi|336253104|ref|YP_004596211.1|	-	2.5e-09	37.0	0.2	5.1e-09	36.0	0.2	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|336253104|ref|YP_004596211.1|	-	1.6e-05	24.6	0.1	7.9e-05	22.3	0.1	2.2	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|336253104|ref|YP_004596211.1|	-	9.4e-05	22.9	0.1	0.00025	21.6	0.1	1.7	1	0	0	1	1	1	1	ACT	domain
HalOD1	PF18545.1	gi|336253105|ref|YP_004596212.1|	-	1.7e-22	79.5	0.5	2.2e-22	79.1	0.5	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
AbiJ_NTD5	PF18865.1	gi|336253105|ref|YP_004596212.1|	-	0.096	12.5	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	AbiJ	N-terminal	domain	5
SHOCT	PF09851.9	gi|336253106|ref|YP_004596213.1|	-	7.8e-08	31.8	2.0	1.6e-07	30.9	2.0	1.5	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|336253106|ref|YP_004596213.1|	-	1.2e-06	28.5	3.2	2.5e-06	27.4	3.2	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
PurS	PF02700.14	gi|336253107|ref|YP_004596214.1|	-	1.7e-26	92.2	0.0	1.9e-26	92.1	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
DUF2184	PF09950.9	gi|336253107|ref|YP_004596214.1|	-	0.033	13.6	0.0	0.035	13.5	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2184)
SIMPL	PF04402.14	gi|336253107|ref|YP_004596214.1|	-	0.092	13.2	0.6	0.1	13.1	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF541)
GATase_5	PF13507.6	gi|336253108|ref|YP_004596215.1|	-	1.3e-42	145.7	0.0	1.6e-42	145.4	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|336253108|ref|YP_004596215.1|	-	8.6e-08	32.2	0.0	1.1e-07	31.8	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|336253108|ref|YP_004596215.1|	-	6.7e-05	22.6	0.0	0.00011	21.9	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|336253108|ref|YP_004596215.1|	-	0.0002	21.2	0.0	0.00028	20.8	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.13	gi|336253108|ref|YP_004596215.1|	-	0.1	12.3	0.1	0.17	11.6	0.1	1.2	1	0	0	1	1	1	0	Peptidase	C26
PAS	PF00989.25	gi|336253109|ref|YP_004596216.1|	-	3.3e-21	75.4	0.1	1e-13	51.2	0.1	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|336253109|ref|YP_004596216.1|	-	1e-19	70.7	0.0	2.9e-12	46.8	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
GAF_2	PF13185.6	gi|336253109|ref|YP_004596216.1|	-	4.7e-18	65.8	12.0	8.9e-12	45.5	0.7	3.1	3	0	0	3	3	2	2	GAF	domain
PAS_8	PF13188.7	gi|336253109|ref|YP_004596216.1|	-	1.4e-16	60.0	0.0	1.9e-07	31.0	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|336253109|ref|YP_004596216.1|	-	1.4e-13	51.0	8.4	3.5e-08	33.7	0.4	4.6	4	1	0	4	4	4	2	PAS	fold
HATPase_c	PF02518.26	gi|336253109|ref|YP_004596216.1|	-	1.6e-11	44.7	0.0	3.3e-11	43.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|336253109|ref|YP_004596216.1|	-	2e-10	41.4	1.7	1.7e-07	32.0	0.1	3.1	2	0	0	2	2	2	2	GAF	domain
PAS_3	PF08447.12	gi|336253109|ref|YP_004596216.1|	-	5.5e-10	39.4	0.0	9.3e-06	25.9	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
GAF_3	PF13492.6	gi|336253109|ref|YP_004596216.1|	-	2e-06	28.1	1.4	5.9e-06	26.7	0.3	2.4	3	0	0	3	3	3	1	GAF	domain
HisKA_4TM	PF16926.5	gi|336253109|ref|YP_004596216.1|	-	0.00018	21.2	0.0	0.00046	19.8	0.0	1.7	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
PAS_7	PF12860.7	gi|336253109|ref|YP_004596216.1|	-	0.00044	20.4	0.9	0.18	12.0	0.1	4.1	3	0	0	3	3	3	1	PAS	fold
Response_reg	PF00072.24	gi|336253109|ref|YP_004596216.1|	-	0.0054	16.9	0.0	0.021	15.0	0.0	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
MEKHLA	PF08670.11	gi|336253109|ref|YP_004596216.1|	-	0.14	12.0	0.0	0.8	9.6	0.0	2.2	3	0	0	3	3	3	0	MEKHLA	domain
HisKA	PF00512.25	gi|336253109|ref|YP_004596216.1|	-	0.58	10.2	6.3	0.077	13.0	0.5	2.6	3	0	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
YqaH	PF17448.2	gi|336253109|ref|YP_004596216.1|	-	2.2	8.6	4.8	2	8.8	0.1	3.2	3	1	0	3	3	3	0	Uncharacterized	YqaH-like
Radical_SAM	PF04055.21	gi|336253110|ref|YP_004596217.1|	-	0.0044	17.4	0.1	0.0082	16.5	0.1	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Zn-ribbon_8	PF09723.10	gi|336253111|ref|YP_004596218.1|	-	0.00021	21.4	0.7	0.39	10.9	0.1	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|336253111|ref|YP_004596218.1|	-	0.00041	20.2	0.6	0.09	12.7	0.1	2.2	2	0	0	2	2	2	2	RNA	polymerases	M/15	Kd	subunit
TF_Zn_Ribbon	PF08271.12	gi|336253111|ref|YP_004596218.1|	-	0.0017	17.8	0.5	1.6	8.3	0.1	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
Nudix_N_2	PF14803.6	gi|336253111|ref|YP_004596218.1|	-	0.0078	16.1	3.1	0.071	13.0	3.1	2.1	1	1	0	1	1	1	1	Nudix	N-terminal
TackOD1	PF18551.1	gi|336253111|ref|YP_004596218.1|	-	0.0099	15.6	0.6	0.11	12.1	0.6	1.9	1	1	0	1	1	1	1	Thaumarchaeal	output	domain	1
A2L_zn_ribbon	PF08792.10	gi|336253111|ref|YP_004596218.1|	-	0.012	15.3	2.6	1.4	8.7	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Rubredoxin	PF00301.20	gi|336253111|ref|YP_004596218.1|	-	0.013	15.5	3.5	0.081	13.0	3.5	2.0	1	1	0	1	1	1	0	Rubredoxin
Zn_Tnp_IS1595	PF12760.7	gi|336253111|ref|YP_004596218.1|	-	0.013	15.4	0.6	0.46	10.5	0.1	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253111|ref|YP_004596218.1|	-	0.022	14.2	0.3	0.8	9.2	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.19	gi|336253111|ref|YP_004596218.1|	-	0.029	14.4	0.1	0.037	14.0	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
GATA	PF00320.27	gi|336253111|ref|YP_004596218.1|	-	0.034	13.7	0.6	0.36	10.5	0.1	2.1	2	0	0	2	2	2	0	GATA	zinc	finger
Rubredoxin_2	PF18073.1	gi|336253111|ref|YP_004596218.1|	-	0.035	13.8	2.3	2.5	7.9	0.5	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_10	PF10058.9	gi|336253111|ref|YP_004596218.1|	-	0.054	13.2	0.5	1.6	8.5	0.1	2.1	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-Mss51	PF13824.6	gi|336253111|ref|YP_004596218.1|	-	0.059	13.5	0.2	5.7	7.1	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Elf1	PF05129.13	gi|336253111|ref|YP_004596218.1|	-	0.065	13.3	0.8	3.8	7.6	0.0	2.1	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
OrfB_Zn_ribbon	PF07282.11	gi|336253111|ref|YP_004596218.1|	-	0.18	11.7	1.7	0.72	9.8	1.2	1.8	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
zf-RRN7	PF11781.8	gi|336253111|ref|YP_004596218.1|	-	0.32	10.7	0.1	0.32	10.7	0.1	2.4	2	1	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
BAT	PF15915.5	gi|336253112|ref|YP_004596219.1|	-	9.6e-49	165.2	15.1	9.6e-49	165.2	15.1	3.7	3	1	0	3	3	3	1	GAF	and	HTH_10	associated	domain
PAS_9	PF13426.7	gi|336253112|ref|YP_004596219.1|	-	2.1e-25	89.0	0.0	2e-23	82.6	0.1	2.7	2	0	0	2	2	2	1	PAS	domain
HTH_10	PF04967.12	gi|336253112|ref|YP_004596219.1|	-	2.6e-19	68.7	0.0	5.6e-19	67.7	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.25	gi|336253112|ref|YP_004596219.1|	-	3.7e-16	59.1	0.0	7.7e-12	45.2	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.10	gi|336253112|ref|YP_004596219.1|	-	1.6e-14	54.1	2.2	3.9e-10	39.9	0.1	3.1	3	0	0	3	3	3	2	PAS	fold
PAS_3	PF08447.12	gi|336253112|ref|YP_004596219.1|	-	4.9e-10	39.6	0.0	2.6e-09	37.3	0.0	2.3	3	0	0	3	3	3	1	PAS	fold
PAS_8	PF13188.7	gi|336253112|ref|YP_004596219.1|	-	7.7e-08	32.2	0.0	0.00014	21.8	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
GAF_2	PF13185.6	gi|336253112|ref|YP_004596219.1|	-	0.01	16.1	1.7	0.01	16.1	1.7	3.0	3	2	0	4	4	4	0	GAF	domain
HTH_11	PF08279.12	gi|336253112|ref|YP_004596219.1|	-	0.095	12.7	0.0	0.22	11.5	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
GAF_3	PF13492.6	gi|336253112|ref|YP_004596219.1|	-	0.1	12.9	0.1	0.27	11.6	0.1	1.8	1	0	0	1	1	1	0	GAF	domain
DUF1328	PF07043.13	gi|336253113|ref|YP_004596220.1|	-	3.2e-11	43.2	19.9	5.4e-11	42.5	19.9	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1328)
DUF2973	PF11189.8	gi|336253113|ref|YP_004596220.1|	-	4	7.6	10.2	0.58	10.3	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2973)
AFOR_C	PF01314.18	gi|336253114|ref|YP_004596221.1|	-	2.6e-118	395.4	2.1	3.1e-118	395.1	2.1	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|336253114|ref|YP_004596221.1|	-	5.1e-72	241.9	0.0	7.8e-72	241.3	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
HTH_20	PF12840.7	gi|336253115|ref|YP_004596222.1|	-	1.1e-10	41.4	0.9	1.6e-10	40.9	0.9	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336253115|ref|YP_004596222.1|	-	5.9e-06	26.0	0.1	9.5e-06	25.3	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|336253115|ref|YP_004596222.1|	-	1.8e-05	24.5	0.0	2.7e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
ArsR	PF09824.9	gi|336253115|ref|YP_004596222.1|	-	4.6e-05	23.1	0.0	5.5e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
MarR_2	PF12802.7	gi|336253115|ref|YP_004596222.1|	-	0.0011	18.8	0.1	0.0018	18.1	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336253115|ref|YP_004596222.1|	-	0.0011	18.5	0.0	0.002	17.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|336253115|ref|YP_004596222.1|	-	0.027	14.8	0.0	0.044	14.1	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_5	PF01022.20	gi|336253115|ref|YP_004596222.1|	-	0.033	14.0	0.0	0.044	13.6	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FUR	PF01475.19	gi|336253115|ref|YP_004596222.1|	-	0.055	13.6	0.0	0.067	13.3	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_11	PF08279.12	gi|336253115|ref|YP_004596222.1|	-	0.068	13.1	0.1	0.1	12.5	0.1	1.2	1	0	0	1	1	1	0	HTH	domain
DprA_WH	PF17782.1	gi|336253115|ref|YP_004596222.1|	-	0.071	13.2	1.9	0.65	10.1	1.9	2.3	1	1	0	1	1	1	0	DprA	winged	helix	domain
HTH_10	PF04967.12	gi|336253116|ref|YP_004596223.1|	-	9.4e-21	73.4	0.1	1.5e-20	72.8	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GerE	PF00196.19	gi|336253116|ref|YP_004596223.1|	-	0.05	13.2	0.1	2.3	7.8	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
LexA_DNA_bind	PF01726.16	gi|336253116|ref|YP_004596223.1|	-	0.064	13.0	0.1	0.26	11.1	0.1	1.9	1	1	0	1	1	1	0	LexA	DNA	binding	domain
HTH_24	PF13412.6	gi|336253116|ref|YP_004596223.1|	-	0.14	11.8	0.0	0.32	10.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Homeodomain	PF00046.29	gi|336253116|ref|YP_004596223.1|	-	0.14	12.0	0.0	0.35	10.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain
Zn-ribbon_8	PF09723.10	gi|336253117|ref|YP_004596224.1|	-	2.3e-10	40.4	1.8	2.8e-10	40.1	1.8	1.1	1	0	0	1	1	1	1	Zinc	ribbon	domain
Sgf11	PF08209.11	gi|336253117|ref|YP_004596224.1|	-	5.1e-05	22.8	0.6	0.049	13.2	0.1	2.1	2	0	0	2	2	2	2	Sgf11	(transcriptional	regulation	protein)
zf_UBZ	PF18439.1	gi|336253117|ref|YP_004596224.1|	-	6.2e-05	22.5	1.0	0.0035	16.9	0.4	2.1	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
DNA_ligase_ZBD	PF03119.16	gi|336253117|ref|YP_004596224.1|	-	8.9e-05	22.4	4.4	0.046	13.8	0.1	2.2	2	0	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-Di19	PF05605.12	gi|336253117|ref|YP_004596224.1|	-	0.00027	21.1	1.1	0.0082	16.4	1.1	2.0	1	1	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
Zn_ribbon_SprT	PF17283.2	gi|336253117|ref|YP_004596224.1|	-	0.0003	20.6	0.0	0.00043	20.1	0.0	1.3	1	0	0	1	1	1	1	SprT-like	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253117|ref|YP_004596224.1|	-	0.00032	20.0	1.6	0.17	11.3	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|336253117|ref|YP_004596224.1|	-	0.00033	20.6	0.7	0.00043	20.3	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
YhfH	PF14149.6	gi|336253117|ref|YP_004596224.1|	-	0.00039	20.3	1.3	0.092	12.7	0.3	2.2	2	0	0	2	2	2	1	YhfH-like	protein
zf_Rg	PF17915.1	gi|336253117|ref|YP_004596224.1|	-	0.00046	19.5	0.1	0.39	10.2	0.0	2.1	2	0	0	2	2	2	2	Reverse	gyrase	zinc	finger
zinc_ribbon_2	PF13240.6	gi|336253117|ref|YP_004596224.1|	-	0.00069	19.2	2.7	0.19	11.5	0.3	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
UPF0547	PF10571.9	gi|336253117|ref|YP_004596224.1|	-	0.00075	19.5	4.9	0.11	12.6	0.7	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.12	gi|336253117|ref|YP_004596224.1|	-	0.00092	18.7	5.0	0.0075	15.8	0.5	2.1	1	1	0	2	2	2	1	TFIIB	zinc-binding
zf-dskA_traR	PF01258.17	gi|336253117|ref|YP_004596224.1|	-	0.0011	18.8	2.8	0.19	11.7	0.5	2.2	2	0	0	2	2	2	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
Nop10p	PF04135.12	gi|336253117|ref|YP_004596224.1|	-	0.0012	18.8	0.7	0.099	12.7	0.0	2.1	1	1	1	2	2	2	1	Nucleolar	RNA-binding	protein,	Nop10p	family
Elf1	PF05129.13	gi|336253117|ref|YP_004596224.1|	-	0.0018	18.3	0.5	0.002	18.2	0.5	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
YacG	PF03884.14	gi|336253117|ref|YP_004596224.1|	-	0.003	17.3	0.9	0.47	10.2	0.1	2.1	2	0	0	2	2	2	1	DNA	gyrase	inhibitor	YacG
DUF1610	PF07754.11	gi|336253117|ref|YP_004596224.1|	-	0.0033	17.3	2.9	0.13	12.3	0.5	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
zf-IS66	PF13005.7	gi|336253117|ref|YP_004596224.1|	-	0.0034	17.7	1.3	0.97	9.9	0.2	2.1	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
CpXC	PF14353.6	gi|336253117|ref|YP_004596224.1|	-	0.0034	17.4	1.4	0.095	12.8	0.1	2.0	1	1	1	2	2	2	1	CpXC	protein
HypA	PF01155.19	gi|336253117|ref|YP_004596224.1|	-	0.004	17.2	0.7	0.004	17.1	0.7	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|336253117|ref|YP_004596224.1|	-	0.004	17.1	1.1	0.017	15.1	1.1	1.8	1	1	0	1	1	1	1	zinc-ribbons
OrfB_Zn_ribbon	PF07282.11	gi|336253117|ref|YP_004596224.1|	-	0.0053	16.6	1.6	0.13	12.2	1.4	2.0	1	1	1	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-ISL3	PF14690.6	gi|336253117|ref|YP_004596224.1|	-	0.0058	17.3	0.3	2.1	9.1	0.0	2.1	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Ogr_Delta	PF04606.12	gi|336253117|ref|YP_004596224.1|	-	0.0064	16.4	1.1	0.72	9.9	0.1	2.2	2	0	0	2	2	2	1	Ogr/Delta-like	zinc	finger
zinc_ribbon_4	PF13717.6	gi|336253117|ref|YP_004596224.1|	-	0.0093	15.9	0.3	0.015	15.2	0.3	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|336253117|ref|YP_004596224.1|	-	0.01	15.6	1.8	0.53	10.1	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|336253117|ref|YP_004596224.1|	-	0.011	15.7	2.1	0.64	10.0	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Prok-RING_4	PF14447.6	gi|336253117|ref|YP_004596224.1|	-	0.012	15.4	0.8	0.43	10.5	1.0	2.0	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-C3HC4_3	PF13920.6	gi|336253117|ref|YP_004596224.1|	-	0.012	15.4	0.9	0.073	12.9	0.9	1.9	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
PhnA_Zn_Ribbon	PF08274.12	gi|336253117|ref|YP_004596224.1|	-	0.013	15.4	3.2	0.22	11.5	0.8	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Rubredoxin	PF00301.20	gi|336253117|ref|YP_004596224.1|	-	0.013	15.5	0.4	4	7.5	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin
zf-NADH-PPase	PF09297.11	gi|336253117|ref|YP_004596224.1|	-	0.017	14.8	0.3	1.3	8.7	0.3	2.2	1	1	1	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|336253117|ref|YP_004596224.1|	-	0.017	15.1	0.5	0.019	15.0	0.5	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
DUF2072	PF09845.9	gi|336253117|ref|YP_004596224.1|	-	0.019	15.2	0.4	0.023	15.0	0.4	1.3	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
zf-TFIIB	PF13453.6	gi|336253117|ref|YP_004596224.1|	-	0.022	14.1	2.2	0.067	12.5	2.7	1.5	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zf-LITAF-like	PF10601.9	gi|336253117|ref|YP_004596224.1|	-	0.022	15.0	1.6	1.5	9.2	0.1	2.1	1	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
RNHCP	PF12647.7	gi|336253117|ref|YP_004596224.1|	-	0.027	14.4	1.0	0.075	13.0	0.9	1.6	1	1	1	2	2	2	0	RNHCP	domain
Nudix_N_2	PF14803.6	gi|336253117|ref|YP_004596224.1|	-	0.03	14.3	1.4	3.7	7.5	0.1	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
zf-Mss51	PF13824.6	gi|336253117|ref|YP_004596224.1|	-	0.031	14.4	3.3	0.77	9.9	0.3	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-HYPF	PF07503.12	gi|336253117|ref|YP_004596224.1|	-	0.033	14.0	1.6	0.076	12.8	1.6	1.6	1	1	0	1	1	1	0	HypF	finger
TFIIS_C	PF01096.18	gi|336253117|ref|YP_004596224.1|	-	0.042	13.7	1.3	4.8	7.1	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF983	PF06170.12	gi|336253117|ref|YP_004596224.1|	-	0.052	13.9	1.5	6	7.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
zf-DNA_Pol	PF08996.10	gi|336253117|ref|YP_004596224.1|	-	0.062	13.0	0.6	0.063	13.0	0.6	1.1	1	0	0	1	1	1	0	DNA	Polymerase	alpha	zinc	finger
zf_C2H2_10	PF18414.1	gi|336253117|ref|YP_004596224.1|	-	0.07	12.7	1.5	3.2	7.4	0.1	2.1	2	0	0	2	2	2	0	C2H2	type	zinc-finger
DUF4379	PF14311.6	gi|336253117|ref|YP_004596224.1|	-	0.077	13.4	0.4	0.095	13.1	0.4	1.2	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
Acetone_carb_G	PF08882.11	gi|336253117|ref|YP_004596224.1|	-	0.078	13.1	2.0	0.13	12.5	0.4	1.8	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
Terminase_GpA	PF05876.12	gi|336253117|ref|YP_004596224.1|	-	0.078	11.5	0.7	0.076	11.6	0.7	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
FYDLN_acid	PF09538.10	gi|336253117|ref|YP_004596224.1|	-	0.08	13.6	0.7	2.2	9.0	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zf-C2H2_4	PF13894.6	gi|336253117|ref|YP_004596224.1|	-	0.09	13.7	0.5	13	6.9	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF2116	PF09889.9	gi|336253117|ref|YP_004596224.1|	-	0.09	12.8	1.8	4.1	7.5	0.3	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Rad50_zn_hook	PF04423.14	gi|336253117|ref|YP_004596224.1|	-	0.091	12.6	2.3	1.1	9.1	0.1	2.1	1	1	1	2	2	2	0	Rad50	zinc	hook	motif
Cys_rich_CPXG	PF14255.6	gi|336253117|ref|YP_004596224.1|	-	0.093	12.6	3.1	0.46	10.4	3.2	1.9	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
zf-RRN7	PF11781.8	gi|336253117|ref|YP_004596224.1|	-	0.1	12.3	4.0	3.7	7.3	0.3	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Lar_restr_allev	PF14354.6	gi|336253117|ref|YP_004596224.1|	-	0.11	12.9	2.6	0.21	12.0	2.6	1.5	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_10	PF10058.9	gi|336253117|ref|YP_004596224.1|	-	0.14	11.9	1.0	0.27	11.0	1.0	1.5	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-tcix	PF14952.6	gi|336253117|ref|YP_004596224.1|	-	0.17	11.5	2.1	9.9	5.9	0.0	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
TerY_C	PF15616.6	gi|336253117|ref|YP_004596224.1|	-	0.38	10.9	3.1	5.8	7.0	0.1	2.0	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
DUF3797	PF12677.7	gi|336253117|ref|YP_004596224.1|	-	0.62	10.0	4.1	4.3	7.3	0.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Prim_Zn_Ribbon	PF08273.12	gi|336253117|ref|YP_004596224.1|	-	0.7	10.2	5.7	12	6.3	1.5	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Pyridox_ox_2	PF12900.7	gi|336253118|ref|YP_004596225.1|	-	3.7e-16	59.4	0.0	4.9e-16	59.0	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|336253118|ref|YP_004596225.1|	-	5.8e-05	23.2	0.0	7.5e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|336253118|ref|YP_004596225.1|	-	0.013	15.1	0.0	0.025	14.1	0.0	1.4	1	1	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase	like
Apocytochr_F_C	PF01333.19	gi|336253120|ref|YP_004596227.1|	-	0.16	12.1	0.0	0.19	11.8	0.0	1.1	1	0	0	1	1	1	0	Apocytochrome	F,	C-terminal
AzlD	PF05437.12	gi|336253121|ref|YP_004596228.1|	-	2.7e-15	56.3	8.7	3.1e-15	56.1	8.7	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	protein	(AzlD)
AzlC	PF03591.14	gi|336253122|ref|YP_004596229.1|	-	5.9e-39	133.6	11.5	5.9e-39	133.6	11.5	1.6	2	0	0	2	2	2	1	AzlC	protein
DUF202	PF02656.15	gi|336253123|ref|YP_004596230.1|	-	2	8.9	7.7	10	6.7	0.5	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
YiaAB	PF05360.14	gi|336253123|ref|YP_004596230.1|	-	5.2	7.4	11.4	3.7	7.9	2.6	2.2	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
ThiS	PF02597.20	gi|336253124|ref|YP_004596231.1|	-	4.4e-18	65.7	0.2	5e-18	65.5	0.2	1.0	1	0	0	1	1	1	1	ThiS	family
Ub-Mut7C	PF14451.6	gi|336253124|ref|YP_004596231.1|	-	0.11	12.4	0.1	1.1	9.1	0.0	2.1	2	0	0	2	2	2	0	Mut7-C	ubiquitin
TFIIF_alpha	PF05793.12	gi|336253126|ref|YP_004596233.1|	-	4.9	5.6	22.4	5.4	5.5	22.4	1.1	1	0	0	1	1	1	0	Transcription	initiation	factor	IIF,	alpha	subunit	(TFIIF-alpha)
Trypan_PARP	PF05887.11	gi|336253126|ref|YP_004596233.1|	-	6.9	6.6	20.5	9.5	6.2	20.5	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
NAD_kinase	PF01513.21	gi|336253127|ref|YP_004596234.1|	-	5.9e-39	134.0	1.3	1.2e-37	129.7	0.5	2.0	2	0	0	2	2	2	2	ATP-NAD	kinase
Secretin_N	PF03958.17	gi|336253127|ref|YP_004596234.1|	-	0.00077	19.8	0.2	0.011	16.2	0.2	2.3	1	1	0	1	1	1	1	Bacterial	type	II/III	secretion	system	short	domain
CW_binding_2	PF04122.12	gi|336253127|ref|YP_004596234.1|	-	0.13	12.9	3.3	0.26	12.0	0.9	2.5	2	1	0	2	2	2	0	Putative	cell	wall	binding	repeat	2
ATPase	PF06745.13	gi|336253128|ref|YP_004596235.1|	-	3.8e-50	170.4	0.0	4.5e-50	170.1	0.0	1.1	1	0	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|336253128|ref|YP_004596235.1|	-	4.5e-06	26.2	0.0	0.019	14.3	0.0	2.2	1	1	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|336253128|ref|YP_004596235.1|	-	4.8e-06	26.3	0.0	8e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|336253128|ref|YP_004596235.1|	-	1.7e-05	23.6	0.1	2.5e-05	23.1	0.1	1.2	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_24	PF13479.6	gi|336253128|ref|YP_004596235.1|	-	0.00021	21.1	0.0	0.00057	19.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
MEDS	PF14417.6	gi|336253128|ref|YP_004596235.1|	-	0.00032	20.6	0.0	0.00077	19.3	0.0	1.6	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Rad51	PF08423.11	gi|336253128|ref|YP_004596235.1|	-	0.012	14.9	0.1	0.02	14.2	0.1	1.4	1	1	0	1	1	1	0	Rad51
RecA	PF00154.21	gi|336253128|ref|YP_004596235.1|	-	0.042	13.3	0.0	0.11	12.0	0.0	1.6	2	0	0	2	2	2	0	recA	bacterial	DNA	recombination	protein
AAA_30	PF13604.6	gi|336253128|ref|YP_004596235.1|	-	0.11	12.3	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|336253128|ref|YP_004596235.1|	-	0.15	10.9	0.0	0.23	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
PhoH	PF02562.16	gi|336253128|ref|YP_004596235.1|	-	0.17	11.3	0.0	0.28	10.6	0.0	1.2	1	0	0	1	1	1	0	PhoH-like	protein
Usp	PF00582.26	gi|336253130|ref|YP_004596237.1|	-	8.1e-32	110.7	4.3	9e-32	110.5	4.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|336253130|ref|YP_004596237.1|	-	0.051	13.6	0.1	0.078	13.0	0.1	1.3	1	1	0	1	1	1	0	DNA	photolyase
ParBc	PF02195.18	gi|336253131|ref|YP_004596238.1|	-	0.077	13.3	0.1	0.29	11.5	0.0	2.0	2	1	0	2	2	2	0	ParB-like	nuclease	domain
YadA_head	PF05658.14	gi|336253131|ref|YP_004596238.1|	-	1.8	9.1	5.9	0.15	12.5	0.7	2.0	2	0	0	2	2	2	0	Head	domain	of	trimeric	autotransporter	adhesin
RNA_pol_Rpb5_C	PF01191.19	gi|336253132|ref|YP_004596239.1|	-	1.4e-25	88.9	0.7	1.6e-25	88.7	0.7	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DUF3006	PF11213.8	gi|336253132|ref|YP_004596239.1|	-	0.0072	16.5	2.2	1.1	9.5	2.2	2.2	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
RNA_pol_Rpb2_1	PF04563.15	gi|336253133|ref|YP_004596240.1|	-	1.5e-50	171.6	0.1	1.8e-50	171.3	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|336253133|ref|YP_004596240.1|	-	5.4e-27	94.7	0.1	8.2e-27	94.1	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.16	gi|336253133|ref|YP_004596240.1|	-	8.6e-24	83.5	0.0	1.6e-23	82.6	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_6	PF00562.28	gi|336253134|ref|YP_004596241.1|	-	1.2e-128	429.5	0.0	1.6e-128	429.1	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.20	gi|336253134|ref|YP_004596241.1|	-	1.9e-29	101.9	0.1	3.5e-29	101.1	0.1	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|336253134|ref|YP_004596241.1|	-	4e-21	75.1	0.4	7.3e-21	74.2	0.4	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|336253134|ref|YP_004596241.1|	-	4.3e-10	40.0	5.4	1.3e-09	38.5	5.4	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
OrfB_Zn_ribbon	PF07282.11	gi|336253134|ref|YP_004596241.1|	-	0.0077	16.1	0.8	0.015	15.2	0.8	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
NOB1_Zn_bind	PF08772.11	gi|336253134|ref|YP_004596241.1|	-	0.18	12.0	0.1	0.35	11.0	0.1	1.4	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Auto_anti-p27	PF06677.12	gi|336253134|ref|YP_004596241.1|	-	0.41	10.8	2.5	0.72	10.1	2.5	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.6	gi|336253134|ref|YP_004596241.1|	-	1.6	8.2	3.4	17	5.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
RNA_pol_Rpb1_1	PF04997.12	gi|336253135|ref|YP_004596242.1|	-	1.4e-112	376.1	0.0	3.8e-112	374.7	0.0	1.7	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|336253135|ref|YP_004596242.1|	-	2.4e-68	229.6	0.3	3.8e-68	228.9	0.3	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.17	gi|336253135|ref|YP_004596242.1|	-	7.8e-32	109.4	0.0	1.8e-31	108.3	0.0	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.18	gi|336253135|ref|YP_004596242.1|	-	2.2e-28	99.2	0.0	4e-28	98.3	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.17	gi|336253135|ref|YP_004596242.1|	-	2.1e-26	92.9	0.0	4.1e-26	92.0	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
HTH_3	PF01381.22	gi|336253135|ref|YP_004596242.1|	-	0.0087	16.1	0.0	0.025	14.6	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix
RNA_pol_Rpb1_5	PF04998.17	gi|336253136|ref|YP_004596243.1|	-	1.5e-54	185.2	0.3	1.8e-54	185.0	0.3	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
KH_5	PF13184.6	gi|336253137|ref|YP_004596244.1|	-	3.5e-11	43.0	0.1	2.1e-10	40.5	0.0	2.0	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_2	PF07650.17	gi|336253137|ref|YP_004596244.1|	-	1.2e-10	41.0	0.1	8.1e-05	22.4	0.0	2.2	1	1	1	2	2	2	2	KH	domain
KH_4	PF13083.6	gi|336253137|ref|YP_004596244.1|	-	9.1e-08	31.9	0.1	0.0009	19.1	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|336253137|ref|YP_004596244.1|	-	0.00054	19.7	0.0	0.019	14.7	0.0	2.3	1	1	1	2	2	2	1	KH	domain
Ribosom_S12_S23	PF00164.25	gi|336253138|ref|YP_004596245.1|	-	5.5e-50	167.8	0.4	6.8e-50	167.5	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.21	gi|336253139|ref|YP_004596246.1|	-	3.4e-36	124.1	4.2	4.2e-36	123.8	4.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
DUF2420	PF10336.9	gi|336253139|ref|YP_004596246.1|	-	0.12	12.5	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2420)
GTP_EFTU	PF00009.27	gi|336253141|ref|YP_004596248.1|	-	6.4e-65	218.3	0.3	1.1e-64	217.5	0.3	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.18	gi|336253141|ref|YP_004596248.1|	-	3.5e-24	84.9	0.0	1.1e-23	83.3	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.24	gi|336253141|ref|YP_004596248.1|	-	5.8e-24	83.9	0.1	6.8e-23	80.5	0.0	2.6	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.6	gi|336253141|ref|YP_004596248.1|	-	7.2e-22	77.3	0.4	2.4e-21	75.6	0.4	2.0	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|336253141|ref|YP_004596248.1|	-	8.4e-19	67.7	1.7	9.7e-18	64.3	0.8	3.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|336253141|ref|YP_004596248.1|	-	2.9e-05	24.1	0.3	0.00021	21.4	0.1	2.5	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
RF3_C	PF16658.5	gi|336253141|ref|YP_004596248.1|	-	0.041	13.7	0.0	0.092	12.6	0.0	1.6	1	0	0	1	1	1	0	Class	II	release	factor	RF3,	C-terminal	domain
RsgA_GTPase	PF03193.16	gi|336253141|ref|YP_004596248.1|	-	0.087	12.7	0.2	1.3	8.9	0.0	2.7	3	0	0	3	3	3	0	RsgA	GTPase
Ras	PF00071.22	gi|336253141|ref|YP_004596248.1|	-	0.17	11.5	0.0	0.39	10.3	0.0	1.5	1	0	0	1	1	1	0	Ras	family
Seryl_tRNA_N	PF02403.22	gi|336253142|ref|YP_004596249.1|	-	4.5e-29	100.9	10.0	9e-29	99.9	10.0	1.5	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_2b	PF00587.25	gi|336253142|ref|YP_004596249.1|	-	6e-27	94.8	0.0	1.1e-26	93.9	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
LUC7	PF03194.15	gi|336253142|ref|YP_004596249.1|	-	0.0078	15.9	0.3	0.011	15.4	0.3	1.2	1	0	0	1	1	1	1	LUC7	N_terminus
FapA	PF03961.13	gi|336253142|ref|YP_004596249.1|	-	0.02	13.6	3.0	0.031	12.9	3.0	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
LidA_Long_CC	PF18641.1	gi|336253142|ref|YP_004596249.1|	-	0.052	13.6	1.6	0.098	12.7	1.6	1.5	1	0	0	1	1	1	0	LidA	long	coiled-coil	domain
Vps54_N	PF10475.9	gi|336253142|ref|YP_004596249.1|	-	0.13	11.6	1.1	0.19	11.0	1.1	1.2	1	0	0	1	1	1	0	Vacuolar-sorting	protein	54,	of	GARP	complex
Atg14	PF10186.9	gi|336253142|ref|YP_004596249.1|	-	0.17	11.0	5.2	0.25	10.4	5.2	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
OmpH	PF03938.14	gi|336253142|ref|YP_004596249.1|	-	0.21	11.9	3.2	0.38	11.1	3.2	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Golgin_A5	PF09787.9	gi|336253142|ref|YP_004596249.1|	-	0.28	10.6	6.2	0.43	10.0	5.6	1.5	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
V-SNARE	PF05008.15	gi|336253142|ref|YP_004596249.1|	-	0.32	11.4	10.7	30	5.1	6.2	3.4	2	1	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
HAUS5	PF14817.6	gi|336253142|ref|YP_004596249.1|	-	0.38	9.4	5.0	0.54	9.0	5.0	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	5
AAA_11	PF13086.6	gi|336253142|ref|YP_004596249.1|	-	0.49	10.1	3.7	0.72	9.6	3.7	1.2	1	0	0	1	1	1	0	AAA	domain
CENP-F_leu_zip	PF10473.9	gi|336253142|ref|YP_004596249.1|	-	1.3	9.1	15.4	0.12	12.4	10.2	2.0	2	1	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
zf-C4H2	PF10146.9	gi|336253142|ref|YP_004596249.1|	-	1.5	9.1	4.4	2.8	8.2	4.4	1.4	1	0	0	1	1	1	0	Zinc	finger-containing	protein
ZapB	PF06005.12	gi|336253142|ref|YP_004596249.1|	-	1.9	9.0	15.4	0.51	10.8	0.7	3.1	2	1	1	3	3	3	0	Cell	division	protein	ZapB
CENP-H	PF05837.12	gi|336253142|ref|YP_004596249.1|	-	2.2	8.8	6.9	4.1	7.8	6.9	1.4	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4363	PF14276.6	gi|336253142|ref|YP_004596249.1|	-	3	8.0	9.2	9.5	6.4	7.3	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4363)
HlyD_2	PF12700.7	gi|336253142|ref|YP_004596249.1|	-	7.4	5.2	6.4	10	4.7	6.4	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
UPF0242	PF06785.11	gi|336253142|ref|YP_004596249.1|	-	7.5	6.6	8.1	1.6	8.8	4.7	1.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Sigma70_r4_2	PF08281.12	gi|336253143|ref|YP_004596250.1|	-	0.077	12.7	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
TrkA_C	PF02080.21	gi|336253144|ref|YP_004596251.1|	-	1.7e-20	72.6	3.0	1.2e-12	47.4	0.2	2.6	2	0	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.19	gi|336253144|ref|YP_004596251.1|	-	1.7e-17	63.6	7.2	4.3e-08	33.5	0.4	2.4	2	0	0	2	2	2	2	PhoU	domain
PhoU_div	PF01865.16	gi|336253144|ref|YP_004596251.1|	-	0.0011	18.4	2.9	0.79	9.0	0.0	3.1	3	1	0	3	3	3	2	Protein	of	unknown	function	DUF47
CLZ	PF16526.5	gi|336253144|ref|YP_004596251.1|	-	0.089	13.2	0.8	14	6.1	0.2	2.3	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
KfrA_N	PF11740.8	gi|336253144|ref|YP_004596251.1|	-	0.097	13.4	3.5	0.22	12.2	0.1	3.0	4	0	0	4	4	4	0	Plasmid	replication	region	DNA-binding	N-term
CRCB	PF02537.15	gi|336253146|ref|YP_004596253.1|	-	3e-22	78.7	5.0	3.6e-22	78.5	5.0	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
DUF3956	PF13104.6	gi|336253146|ref|YP_004596253.1|	-	2.7	8.3	5.0	2.3	8.5	0.4	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3956)
CRCB	PF02537.15	gi|336253147|ref|YP_004596254.1|	-	1.4e-15	57.3	5.5	1.9e-15	57.0	5.5	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
Cation_efflux	PF01545.21	gi|336253148|ref|YP_004596255.1|	-	2.1e-41	141.9	8.1	2.6e-41	141.6	8.1	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|336253148|ref|YP_004596255.1|	-	6.6e-17	61.4	1.5	1.3e-16	60.5	1.5	1.5	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
EI24	PF07264.11	gi|336253148|ref|YP_004596255.1|	-	0.037	14.3	3.5	0.047	13.9	2.6	1.6	1	1	1	2	2	2	0	Etoposide-induced	protein	2.4	(EI24)
ASL_C2	PF14698.6	gi|336253148|ref|YP_004596255.1|	-	0.055	14.2	0.0	0.18	12.6	0.0	1.9	1	0	0	1	1	1	0	Argininosuccinate	lyase	C-terminal
DUF2634	PF10934.8	gi|336253148|ref|YP_004596255.1|	-	0.2	11.8	0.0	0.34	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2634)
Lactamase_B	PF00753.27	gi|336253149|ref|YP_004596256.1|	-	4.5e-24	85.5	6.4	6.7e-24	85.0	6.4	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336253149|ref|YP_004596256.1|	-	1.4e-07	31.2	0.5	6.2e-07	29.1	0.3	2.0	1	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
AMP-binding	PF00501.28	gi|336253150|ref|YP_004596257.1|	-	6.8e-94	314.8	0.0	8e-94	314.6	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
MgtE	PF01769.16	gi|336253151|ref|YP_004596258.1|	-	1.8e-21	76.8	13.2	1.8e-21	76.8	13.2	1.7	2	0	0	2	2	2	1	Divalent	cation	transporter
MgtE	PF01769.16	gi|336253152|ref|YP_004596259.1|	-	1.5e-20	73.8	6.8	1.5e-20	73.8	6.8	1.7	2	0	0	2	2	2	1	Divalent	cation	transporter
Transmemb_17	PF09799.9	gi|336253152|ref|YP_004596259.1|	-	0.0037	17.8	4.1	0.0099	16.5	4.1	1.7	1	0	0	1	1	1	1	Predicted	membrane	protein
Yip1	PF04893.17	gi|336253152|ref|YP_004596259.1|	-	0.2	11.3	19.3	0.67	9.6	19.3	1.7	1	1	0	1	1	1	0	Yip1	domain
Clostridium_P47	PF06597.11	gi|336253152|ref|YP_004596259.1|	-	0.35	9.6	2.3	0.46	9.1	2.3	1.2	1	0	0	1	1	1	0	Clostridium	P-47	protein
UT	PF03253.14	gi|336253154|ref|YP_004596261.1|	-	0.00072	18.8	0.5	0.006	15.8	0.1	1.9	2	0	0	2	2	2	1	Urea	transporter
Sensor_TM1	PF13755.6	gi|336253154|ref|YP_004596261.1|	-	0.015	15.0	0.1	0.029	14.1	0.1	1.4	1	0	0	1	1	1	0	Sensor	N-terminal	transmembrane	domain
CorA	PF01544.18	gi|336253154|ref|YP_004596261.1|	-	0.2	10.9	0.9	0.44	9.8	0.9	1.5	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Peripla_BP_2	PF01497.18	gi|336253155|ref|YP_004596262.1|	-	2.1e-12	47.1	0.0	3.9e-12	46.3	0.0	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|336253155|ref|YP_004596262.1|	-	0.014	15.3	0.2	0.027	14.3	0.2	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PLDc_N	PF13396.6	gi|336253156|ref|YP_004596263.1|	-	0.033	14.1	5.1	0.033	14.1	5.1	1.8	1	1	1	2	2	2	0	Phospholipase_D-nuclease	N-terminal
DUF4499	PF14934.6	gi|336253156|ref|YP_004596263.1|	-	0.041	14.2	0.7	0.054	13.8	0.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4499)
Thiolase_N	PF00108.23	gi|336253157|ref|YP_004596264.1|	-	6.4e-76	255.1	3.4	9.7e-76	254.5	3.4	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|336253157|ref|YP_004596264.1|	-	7.8e-43	145.0	0.1	2e-42	143.7	0.1	1.8	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|336253157|ref|YP_004596264.1|	-	4.5e-06	26.4	0.9	1.1e-05	25.1	0.9	1.7	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|336253157|ref|YP_004596264.1|	-	0.056	13.3	6.7	0.2	11.5	0.1	2.6	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
AFOR_C	PF01314.18	gi|336253158|ref|YP_004596265.1|	-	0.07	12.1	0.1	0.087	11.8	0.1	1.2	1	0	0	1	1	1	0	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
BPL_LplA_LipB	PF03099.19	gi|336253160|ref|YP_004596267.1|	-	0.094	12.6	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
Peptidase_M23	PF01551.22	gi|336253161|ref|YP_004596268.1|	-	0.0058	16.8	0.0	0.012	15.7	0.0	1.6	1	0	0	1	1	1	1	Peptidase	family	M23
Serpin	PF00079.20	gi|336253162|ref|YP_004596269.1|	-	2.6e-107	359.4	0.0	3e-107	359.2	0.0	1.0	1	0	0	1	1	1	1	Serpin	(serine	protease	inhibitor)
p450	PF00067.22	gi|336253163|ref|YP_004596270.1|	-	1.1e-85	288.1	0.0	1.4e-85	287.9	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
Sdh5	PF03937.16	gi|336253163|ref|YP_004596270.1|	-	0.0049	16.8	0.2	0.012	15.6	0.2	1.6	1	0	0	1	1	1	1	Flavinator	of	succinate	dehydrogenase
4HBT	PF03061.22	gi|336253164|ref|YP_004596271.1|	-	2e-13	50.5	0.0	3.6e-13	49.7	0.0	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|336253164|ref|YP_004596271.1|	-	2.4e-05	24.5	0.0	4.8e-05	23.5	0.0	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
nos_propeller_2	PF18793.1	gi|336253165|ref|YP_004596272.1|	-	2.6e-31	107.7	0.2	1.1e-30	105.8	0.2	2.0	2	0	0	2	2	2	1	Nitrous	oxide	reductase	propeller	repeat	2
nos_propeller	PF18764.1	gi|336253165|ref|YP_004596272.1|	-	4.4e-31	106.6	0.4	3.7e-29	100.4	0.1	3.3	3	0	0	3	3	3	1	Nitrous	oxide	reductase	propeller	repeat
Cupredoxin_1	PF13473.6	gi|336253165|ref|YP_004596272.1|	-	2.5e-08	34.0	0.0	5.7e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|336253165|ref|YP_004596272.1|	-	3.5e-07	29.8	4.0	5.4e-07	29.2	4.0	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
COX2	PF00116.20	gi|336253165|ref|YP_004596272.1|	-	2.8e-06	27.2	0.0	6.5e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
DUF5336	PF17270.2	gi|336253166|ref|YP_004596273.1|	-	0.024	14.3	1.0	0.044	13.4	0.1	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5336)
NosD	PF05048.13	gi|336253167|ref|YP_004596274.1|	-	1.7e-54	184.7	15.0	3.2e-53	180.5	14.2	2.0	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|336253167|ref|YP_004596274.1|	-	1.6e-30	106.1	16.6	1.1e-22	80.6	3.4	2.9	2	1	1	3	3	3	2	Right	handed	beta	helix	region
DUF1565	PF07602.11	gi|336253167|ref|YP_004596274.1|	-	1.6e-07	30.9	11.9	0.0023	17.3	0.2	2.6	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1565)
eIF-6	PF01912.18	gi|336253167|ref|YP_004596274.1|	-	0.00031	20.2	2.0	0.00064	19.2	2.0	1.5	1	0	0	1	1	1	1	eIF-6	family
ABC_tran	PF00005.27	gi|336253168|ref|YP_004596275.1|	-	2.1e-28	99.6	0.0	3.4e-28	98.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336253168|ref|YP_004596275.1|	-	4e-11	43.3	0.1	6.9e-07	29.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336253168|ref|YP_004596275.1|	-	0.036	13.5	0.1	4.6	6.6	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|336253168|ref|YP_004596275.1|	-	0.065	13.7	0.3	0.11	12.9	0.3	1.3	1	0	0	1	1	1	0	AAA	domain
DLIC	PF05783.11	gi|336253168|ref|YP_004596275.1|	-	0.11	11.2	0.0	0.17	10.7	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
ABC2_membrane_2	PF12679.7	gi|336253169|ref|YP_004596276.1|	-	3.5e-26	92.2	21.1	1.1e-24	87.3	21.1	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|336253169|ref|YP_004596276.1|	-	0.0029	17.2	1.3	0.011	15.3	1.5	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336253169|ref|YP_004596276.1|	-	0.34	10.0	10.5	0.42	9.7	10.5	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
NosL	PF05573.12	gi|336253170|ref|YP_004596277.1|	-	1.4e-40	138.7	0.5	1.7e-40	138.4	0.5	1.0	1	0	0	1	1	1	1	NosL
DUF2244	PF10003.9	gi|336253172|ref|YP_004596279.1|	-	0.56	9.9	4.2	0.58	9.8	4.2	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Isochorismatase	PF00857.20	gi|336253173|ref|YP_004596280.1|	-	2.4e-49	167.9	0.0	2.7e-49	167.7	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Peptidase_M76	PF09768.9	gi|336253174|ref|YP_004596281.1|	-	0.028	14.2	0.0	0.044	13.6	0.0	1.3	1	0	0	1	1	1	0	Peptidase	M76	family
Peptidase_M78	PF06114.13	gi|336253174|ref|YP_004596281.1|	-	0.16	11.9	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
DUF4956	PF16316.5	gi|336253174|ref|YP_004596281.1|	-	1.6	8.3	3.1	3	7.5	3.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4956)
Peptidase_M76	PF09768.9	gi|336253175|ref|YP_004596282.1|	-	0.0084	15.9	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M76	family
Glyco_hydro_20b	PF02838.15	gi|336253175|ref|YP_004596282.1|	-	0.0087	16.8	0.0	0.019	15.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	20,	domain	2
DUF4157	PF13699.6	gi|336253175|ref|YP_004596282.1|	-	0.096	12.9	0.0	0.33	11.2	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4157)
QRPTase_C	PF01729.19	gi|336253176|ref|YP_004596283.1|	-	1.5e-16	60.6	0.0	2.1e-16	60.2	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|336253176|ref|YP_004596283.1|	-	0.012	15.6	0.0	0.041	13.9	0.0	2.0	2	0	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
NAPRTase_N	PF17767.1	gi|336253176|ref|YP_004596283.1|	-	0.19	12.2	0.0	0.52	10.7	0.0	1.8	1	1	0	1	1	1	0	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
AMMECR1	PF01871.17	gi|336253177|ref|YP_004596284.1|	-	3.2e-40	137.5	0.0	3.7e-40	137.3	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
DprA_WH	PF17782.1	gi|336253178|ref|YP_004596285.1|	-	0.027	14.6	1.6	0.046	13.8	1.6	1.4	1	0	0	1	1	1	0	DprA	winged	helix	domain
HalOD1	PF18545.1	gi|336253179|ref|YP_004596286.1|	-	9.5e-24	83.5	2.5	1.3e-23	83.0	2.5	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HalOD1	PF18545.1	gi|336253180|ref|YP_004596287.1|	-	6.9e-24	83.9	1.4	1e-23	83.3	1.2	1.4	1	1	0	1	1	1	1	Halobacterial	output	domain	1
DUF1833	PF08875.11	gi|336253180|ref|YP_004596287.1|	-	0.074	12.6	0.1	0.088	12.3	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1833)
Cadherin-like	PF12733.7	gi|336253180|ref|YP_004596287.1|	-	0.097	13.2	3.2	0.28	11.7	3.2	1.7	1	1	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
BAT	PF15915.5	gi|336253181|ref|YP_004596288.1|	-	2.2e-16	60.1	2.3	3.3e-16	59.5	2.3	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336253181|ref|YP_004596288.1|	-	6.5e-09	35.5	0.1	1.1e-08	34.7	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_AraC	PF00165.23	gi|336253181|ref|YP_004596288.1|	-	0.0074	16.4	0.0	0.015	15.4	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
UPF0122	PF04297.14	gi|336253181|ref|YP_004596288.1|	-	0.014	15.6	0.0	0.028	14.7	0.0	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
MarR_2	PF12802.7	gi|336253181|ref|YP_004596288.1|	-	0.045	13.6	0.1	0.12	12.2	0.0	1.8	2	0	0	2	2	2	0	MarR	family
HTH_1	PF00126.27	gi|336253181|ref|YP_004596288.1|	-	0.1	12.6	0.0	0.31	11.0	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
AgrD	PF05931.11	gi|336253181|ref|YP_004596288.1|	-	0.21	11.7	0.1	0.61	10.2	0.1	1.7	2	0	0	2	2	2	0	Staphylococcal	AgrD	protein
HTH_20	PF12840.7	gi|336253182|ref|YP_004596289.1|	-	0.0013	18.7	1.1	0.01	15.9	1.1	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
tRNA_anti-codon	PF01336.25	gi|336253183|ref|YP_004596290.1|	-	8.6e-32	109.0	8.5	2.4e-13	49.9	0.5	3.5	3	0	0	3	3	3	3	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|336253183|ref|YP_004596290.1|	-	1.8e-14	53.4	3.7	5.4e-06	26.2	0.1	3.3	3	0	0	3	3	3	3	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|336253183|ref|YP_004596290.1|	-	8.1e-11	42.1	0.1	0.00019	21.2	0.0	3.2	3	0	0	3	3	3	2	Cell	division	control	protein	24,	OB	domain	3
SSB	PF00436.25	gi|336253183|ref|YP_004596290.1|	-	0.00015	21.7	0.2	2.9	8.0	0.0	3.4	3	0	0	3	3	3	2	Single-strand	binding	protein	family
POT1PC	PF16686.5	gi|336253183|ref|YP_004596290.1|	-	0.0032	17.3	0.0	0.85	9.5	0.0	2.7	2	1	0	2	2	2	1	ssDNA-binding	domain	of	telomere	protection	protein
tRNA_anti_2	PF13742.6	gi|336253183|ref|YP_004596290.1|	-	0.0042	17.3	0.1	0.43	10.8	0.0	2.8	3	0	0	3	3	3	1	OB-fold	nucleic	acid	binding	domain
DUF4131	PF13567.6	gi|336253183|ref|YP_004596290.1|	-	0.0048	16.6	0.9	7.1	6.2	0.1	3.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4131)
Rep_fac-A_C	PF08646.10	gi|336253183|ref|YP_004596290.1|	-	0.0089	15.8	0.0	12	5.6	0.0	3.1	3	0	0	3	3	3	1	Replication	factor-A	C	terminal	domain
DUF4539	PF15072.6	gi|336253183|ref|YP_004596290.1|	-	0.034	14.2	0.1	0.27	11.3	0.0	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4539)
CBFD_NFYB_HMF	PF00808.23	gi|336253184|ref|YP_004596291.1|	-	9.1e-27	93.1	0.3	4e-13	49.4	0.1	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|336253184|ref|YP_004596291.1|	-	4.7e-16	59.3	0.7	2.3e-11	44.2	0.1	2.0	1	1	1	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-T_C	PF15511.6	gi|336253184|ref|YP_004596291.1|	-	5.1e-07	29.8	1.1	7.4e-05	22.8	0.1	2.1	1	1	1	2	2	2	2	Centromere	kinetochore	component	CENP-T	histone	fold
CENP-S	PF15630.6	gi|336253184|ref|YP_004596291.1|	-	0.00026	21.3	0.9	0.00057	20.2	0.3	1.8	2	0	0	2	2	2	1	CENP-S	protein
TAF	PF02969.17	gi|336253184|ref|YP_004596291.1|	-	0.016	15.3	2.1	0.28	11.4	0.3	2.3	2	0	0	2	2	2	0	TATA	box	binding	protein	associated	factor	(TAF)
TFIID-31kDa	PF02291.15	gi|336253184|ref|YP_004596291.1|	-	0.028	14.5	0.9	0.066	13.3	0.3	1.7	2	0	0	2	2	2	0	Transcription	initiation	factor	IID,	31kD	subunit
TFIID-18kDa	PF02269.16	gi|336253184|ref|YP_004596291.1|	-	0.039	14.0	0.3	4.5	7.4	0.0	2.1	2	0	0	2	2	2	0	Transcription	initiation	factor	IID,	18kD	subunit
DUF1931	PF09123.11	gi|336253184|ref|YP_004596291.1|	-	0.068	13.3	2.0	0.22	11.6	0.1	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1931)
Hist_deacetyl	PF00850.19	gi|336253185|ref|YP_004596292.1|	-	5e-80	269.3	0.2	7.2e-80	268.7	0.2	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
tRNA_NucTransf2	PF09249.11	gi|336253186|ref|YP_004596293.1|	-	4.9e-45	152.4	0.0	7.6e-45	151.8	0.0	1.3	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|336253186|ref|YP_004596293.1|	-	5.2e-13	49.1	0.0	9.7e-13	48.2	0.0	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|336253186|ref|YP_004596293.1|	-	0.0019	18.4	0.0	0.011	15.9	0.0	2.0	1	1	0	1	1	1	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
PDDEXK_5	PF11645.8	gi|336253187|ref|YP_004596294.1|	-	4.4e-25	88.3	0.0	4.9e-25	88.1	0.0	1.0	1	0	0	1	1	1	1	PD-(D/E)XK	endonuclease
MoCF_biosynth	PF00994.24	gi|336253188|ref|YP_004596295.1|	-	7e-33	113.3	0.0	9e-33	113.0	0.0	1.1	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
tRNA_anti-codon	PF01336.25	gi|336253189|ref|YP_004596296.1|	-	0.04	13.9	0.1	0.18	11.8	0.0	2.1	2	0	0	2	2	2	0	OB-fold	nucleic	acid	binding	domain
RMI1_C	PF16099.5	gi|336253189|ref|YP_004596296.1|	-	0.053	13.4	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Recq-mediated	genome	instability	protein	1,	C-terminal	OB-fold
Notch	PF00066.17	gi|336253189|ref|YP_004596296.1|	-	0.15	12.5	0.6	0.24	11.9	0.6	1.3	1	0	0	1	1	1	0	LNR	domain
Fn3-like	PF14310.6	gi|336253190|ref|YP_004596297.1|	-	0.46	10.6	2.7	0.49	10.5	0.5	2.0	2	0	0	2	2	2	0	Fibronectin	type	III-like	domain
Abhydrolase_2	PF02230.16	gi|336253191|ref|YP_004596298.1|	-	3.8e-18	66.1	0.0	2.1e-17	63.7	0.0	1.9	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
Hydrolase_4	PF12146.8	gi|336253191|ref|YP_004596298.1|	-	3.1e-07	29.9	0.1	0.0026	17.1	0.0	2.8	2	1	0	2	2	2	2	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|336253191|ref|YP_004596298.1|	-	6.3e-07	29.1	0.0	0.00099	18.6	0.0	2.3	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
FSH1	PF03959.13	gi|336253191|ref|YP_004596298.1|	-	0.00013	21.7	0.0	0.00046	19.9	0.0	1.7	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_6	PF12697.7	gi|336253191|ref|YP_004596298.1|	-	0.00087	20.0	5.9	0.014	16.0	1.1	2.1	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|336253191|ref|YP_004596298.1|	-	0.0014	18.2	0.0	0.0031	17.1	0.0	1.5	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_3	PF07859.13	gi|336253191|ref|YP_004596298.1|	-	0.017	15.0	0.1	2.3	8.0	0.0	2.2	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Abhydrolase_1	PF00561.20	gi|336253191|ref|YP_004596298.1|	-	0.024	14.3	0.0	2.8	7.5	0.0	2.5	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|336253191|ref|YP_004596298.1|	-	0.048	13.3	0.0	0.063	12.9	0.0	1.3	1	0	0	1	1	1	0	Putative	esterase
Glyoxalase	PF00903.25	gi|336253192|ref|YP_004596299.1|	-	3.7e-26	91.8	3.2	2.1e-12	47.4	0.2	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|336253192|ref|YP_004596299.1|	-	0.0006	20.1	1.3	0.29	11.4	0.1	2.9	1	1	1	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|336253192|ref|YP_004596299.1|	-	4.8	7.3	5.9	39	4.3	0.8	3.3	2	1	1	3	3	3	0	Glyoxalase-like	domain
RHH_1	PF01402.21	gi|336253193|ref|YP_004596300.1|	-	0.00035	20.4	0.1	0.00035	20.4	0.1	2.4	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF3562	PF12085.8	gi|336253193|ref|YP_004596300.1|	-	0.0063	16.1	0.1	0.012	15.2	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3562)
CopG_antitoxin	PF12441.8	gi|336253193|ref|YP_004596300.1|	-	0.013	16.1	0.0	0.028	14.9	0.0	1.6	1	0	0	1	1	1	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
DUF2238	PF09997.9	gi|336253195|ref|YP_004596302.1|	-	0.2	11.4	18.3	0.041	13.7	3.8	4.0	2	2	0	2	2	2	0	Predicted	membrane	protein	(DUF2238)
Aldo_ket_red	PF00248.21	gi|336253196|ref|YP_004596303.1|	-	2.9e-61	207.3	0.0	3.8e-59	200.3	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
DpaA_N	PF16924.5	gi|336253196|ref|YP_004596303.1|	-	0.037	14.1	0.0	0.084	13.0	0.0	1.5	1	0	0	1	1	1	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
ABC_membrane	PF00664.23	gi|336253197|ref|YP_004596304.1|	-	2.8e-41	142.0	0.1	3.5e-41	141.7	0.1	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|336253197|ref|YP_004596304.1|	-	1.5e-34	119.5	0.0	2.4e-34	118.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
Zeta_toxin	PF06414.12	gi|336253197|ref|YP_004596304.1|	-	0.00099	18.4	0.0	0.0018	17.6	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_22	PF13401.6	gi|336253197|ref|YP_004596304.1|	-	0.0033	17.7	0.2	0.016	15.5	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336253197|ref|YP_004596304.1|	-	0.0048	17.3	0.9	0.013	15.9	0.9	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|336253197|ref|YP_004596304.1|	-	0.0068	16.3	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|336253197|ref|YP_004596304.1|	-	0.0095	15.7	0.1	0.022	14.5	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336253197|ref|YP_004596304.1|	-	0.015	14.8	0.3	0.37	10.2	0.1	2.1	1	1	1	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|336253197|ref|YP_004596304.1|	-	0.023	14.6	0.0	0.043	13.7	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|336253197|ref|YP_004596304.1|	-	0.03	14.1	0.9	0.055	13.2	0.0	1.9	2	0	0	2	2	1	0	P-loop	containing	region	of	AAA	domain
HR_lesion	PF05514.11	gi|336253197|ref|YP_004596304.1|	-	0.068	13.4	0.1	0.14	12.4	0.1	1.5	1	0	0	1	1	1	0	HR-like	lesion-inducing
AAA_33	PF13671.6	gi|336253197|ref|YP_004596304.1|	-	0.068	13.3	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|336253197|ref|YP_004596304.1|	-	0.075	13.1	0.1	0.16	12.1	0.1	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|336253197|ref|YP_004596304.1|	-	0.077	12.7	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|336253197|ref|YP_004596304.1|	-	0.082	13.5	0.0	0.24	12.0	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336253197|ref|YP_004596304.1|	-	0.1	12.7	0.0	0.27	11.3	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_ATPase	PF09818.9	gi|336253197|ref|YP_004596304.1|	-	0.16	10.7	0.1	0.29	9.9	0.1	1.3	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
HTH_20	PF12840.7	gi|336253198|ref|YP_004596305.1|	-	0.063	13.3	0.1	0.18	11.9	0.1	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF192	PF02643.15	gi|336253199|ref|YP_004596306.1|	-	6e-28	96.8	0.0	7.9e-28	96.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
CDP-OH_P_tran_2	PF08009.11	gi|336253199|ref|YP_004596306.1|	-	0.084	12.8	5.2	0.14	12.1	5.2	1.4	1	0	0	1	1	1	0	CDP-alcohol	phosphatidyltransferase	2
ABC_membrane	PF00664.23	gi|336253200|ref|YP_004596307.1|	-	7.3e-46	157.0	1.2	9.3e-46	156.7	1.2	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|336253200|ref|YP_004596307.1|	-	7.4e-38	130.2	0.0	1.5e-37	129.1	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|336253200|ref|YP_004596307.1|	-	8.3e-05	22.9	0.1	0.00038	20.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336253200|ref|YP_004596307.1|	-	0.00048	20.1	0.0	0.00097	19.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_21	PF13304.6	gi|336253200|ref|YP_004596307.1|	-	0.00059	19.7	0.0	0.0016	18.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_24	PF13479.6	gi|336253200|ref|YP_004596307.1|	-	0.0019	18.0	0.1	0.0034	17.1	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|336253200|ref|YP_004596307.1|	-	0.0019	18.8	0.0	0.0047	17.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336253200|ref|YP_004596307.1|	-	0.0021	18.5	0.2	0.005	17.2	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF2107	PF09880.9	gi|336253200|ref|YP_004596307.1|	-	0.0047	17.0	0.5	0.013	15.6	0.5	1.7	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2107)
SMC_N	PF02463.19	gi|336253200|ref|YP_004596307.1|	-	0.0052	16.3	1.1	0.14	11.5	0.2	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.12	gi|336253200|ref|YP_004596307.1|	-	0.0064	15.8	0.0	0.014	14.7	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_29	PF13555.6	gi|336253200|ref|YP_004596307.1|	-	0.012	15.3	0.1	0.036	13.8	0.1	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|336253200|ref|YP_004596307.1|	-	0.018	14.8	0.2	0.048	13.4	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336253200|ref|YP_004596307.1|	-	0.035	14.3	0.2	0.09	12.9	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
Guanylate_kin	PF00625.21	gi|336253200|ref|YP_004596307.1|	-	0.038	13.7	0.0	0.28	10.8	0.1	2.4	2	1	0	2	2	2	0	Guanylate	kinase
AAA_23	PF13476.6	gi|336253200|ref|YP_004596307.1|	-	0.063	13.8	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336253200|ref|YP_004596307.1|	-	0.095	13.1	0.0	0.68	10.4	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|336253200|ref|YP_004596307.1|	-	0.11	12.5	0.1	0.67	10.0	0.0	2.2	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ABC_ATPase	PF09818.9	gi|336253200|ref|YP_004596307.1|	-	0.15	10.8	0.2	0.27	10.0	0.2	1.4	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
DUF1385	PF07136.11	gi|336253200|ref|YP_004596307.1|	-	0.16	11.2	0.3	0.29	10.4	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1385)
MMR_HSR1	PF01926.23	gi|336253200|ref|YP_004596307.1|	-	0.18	11.9	0.0	0.43	10.7	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Mg_chelatase	PF01078.21	gi|336253200|ref|YP_004596307.1|	-	0.19	11.1	0.0	0.35	10.2	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF2157	PF09925.9	gi|336253200|ref|YP_004596307.1|	-	0.54	10.0	4.9	0.82	9.5	0.1	2.8	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2157)
Creatininase	PF02633.14	gi|336253202|ref|YP_004596309.1|	-	2e-70	237.0	1.0	2.3e-70	236.8	1.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Alba	PF01918.21	gi|336253202|ref|YP_004596309.1|	-	0.14	12.0	0.0	0.21	11.5	0.0	1.3	1	0	0	1	1	1	0	Alba
Phe_tRNA-synt_N	PF02912.18	gi|336253203|ref|YP_004596310.1|	-	0.1	12.5	0.1	0.6	10.1	0.0	2.2	2	0	0	2	2	2	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
DHNA	PF04038.12	gi|336253204|ref|YP_004596311.1|	-	4.1e-40	136.6	0.0	4.7e-40	136.5	0.0	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
Epimerase	PF01370.21	gi|336253205|ref|YP_004596312.1|	-	6e-26	91.4	0.0	7.5e-26	91.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336253205|ref|YP_004596312.1|	-	2.1e-13	49.9	0.0	2.9e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|336253205|ref|YP_004596312.1|	-	2.7e-13	49.7	0.0	8.3e-13	48.1	0.0	1.6	2	0	0	2	2	2	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253205|ref|YP_004596312.1|	-	2.5e-12	47.1	0.0	4.4e-12	46.3	0.0	1.3	1	1	0	1	1	1	1	NAD(P)H-binding
Polysacc_synt_2	PF02719.15	gi|336253205|ref|YP_004596312.1|	-	2.4e-11	43.3	0.2	1.8e-07	30.6	0.1	2.7	2	1	0	3	3	3	2	Polysaccharide	biosynthesis	protein
GDP_Man_Dehyd	PF16363.5	gi|336253205|ref|YP_004596312.1|	-	9.2e-11	41.7	0.0	2.8e-10	40.1	0.0	1.9	1	1	0	2	2	2	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336253205|ref|YP_004596312.1|	-	6.9e-05	22.1	0.0	0.00016	20.9	0.0	1.5	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|336253205|ref|YP_004596312.1|	-	9.2e-05	22.1	0.0	0.00017	21.3	0.0	1.4	1	0	0	1	1	1	1	NmrA-like	family
zf-FCS	PF06467.14	gi|336253206|ref|YP_004596313.1|	-	0.008	16.1	0.9	0.056	13.4	0.9	1.9	1	1	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
OrfB_Zn_ribbon	PF07282.11	gi|336253206|ref|YP_004596313.1|	-	0.051	13.5	0.2	0.052	13.5	0.2	1.0	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF309	PF03745.14	gi|336253207|ref|YP_004596314.1|	-	4.1e-18	64.8	4.1	6e-18	64.3	4.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Peptidase_M29	PF02073.15	gi|336253208|ref|YP_004596315.1|	-	9.7e-62	209.0	0.0	1.1e-61	208.8	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
Vut_1	PF02592.15	gi|336253209|ref|YP_004596316.1|	-	1.6e-50	171.3	8.9	1.6e-50	171.3	8.9	1.4	2	0	0	2	2	2	1	Putative	vitamin	uptake	transporter
CSD	PF00313.22	gi|336253210|ref|YP_004596317.1|	-	6.3e-19	67.6	0.1	7e-19	67.5	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|336253210|ref|YP_004596317.1|	-	0.052	13.2	1.9	0.073	12.8	1.9	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
S1-like	PF14444.6	gi|336253210|ref|YP_004596317.1|	-	0.076	13.0	0.2	0.086	12.8	0.2	1.3	1	1	0	1	1	1	0	S1-like
PadR	PF03551.14	gi|336253211|ref|YP_004596318.1|	-	4.8e-13	48.9	0.1	5.7e-13	48.6	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336253211|ref|YP_004596318.1|	-	0.0013	18.7	0.0	0.0017	18.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|336253211|ref|YP_004596318.1|	-	0.0028	17.4	0.0	0.0036	17.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
FUR	PF01475.19	gi|336253211|ref|YP_004596318.1|	-	0.063	13.4	0.0	0.071	13.3	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
TrmB	PF01978.19	gi|336253211|ref|YP_004596318.1|	-	0.1	12.5	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336253211|ref|YP_004596318.1|	-	0.11	12.4	0.3	3.1	7.8	0.1	2.5	2	1	0	2	2	2	0	MarR	family
TFX_C	PF14601.6	gi|336253212|ref|YP_004596319.1|	-	4.2e-31	106.8	0.0	5.7e-31	106.3	0.0	1.2	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.16	gi|336253212|ref|YP_004596319.1|	-	1e-06	28.2	0.2	2e-06	27.2	0.2	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_19	PF12844.7	gi|336253212|ref|YP_004596319.1|	-	2.2e-05	24.4	0.0	5.2e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|336253212|ref|YP_004596319.1|	-	4e-05	23.9	2.8	8.9e-05	22.8	2.8	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|336253212|ref|YP_004596319.1|	-	0.00019	20.9	0.1	0.00028	20.4	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_3	PF01381.22	gi|336253212|ref|YP_004596319.1|	-	0.00052	20.0	0.2	0.0011	19.0	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|336253212|ref|YP_004596319.1|	-	0.0031	17.2	0.1	0.0054	16.4	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|336253212|ref|YP_004596319.1|	-	0.0066	16.2	0.1	0.012	15.4	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_7	PF02796.15	gi|336253212|ref|YP_004596319.1|	-	0.011	15.7	0.0	0.021	14.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_Crp_2	PF13545.6	gi|336253212|ref|YP_004596319.1|	-	0.023	14.7	0.1	0.044	13.8	0.1	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|336253212|ref|YP_004596319.1|	-	0.045	13.5	0.1	0.082	12.7	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TAL_effector	PF03377.13	gi|336253212|ref|YP_004596319.1|	-	0.045	14.1	0.2	0.17	12.2	0.0	2.0	2	0	0	2	2	2	0	TAL	effector	repeat
HTH_24	PF13412.6	gi|336253212|ref|YP_004596319.1|	-	0.047	13.2	0.1	0.086	12.4	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336253212|ref|YP_004596319.1|	-	0.061	13.2	0.2	0.17	11.8	0.2	1.7	1	1	0	1	1	1	0	MarR	family
RepB	PF07506.11	gi|336253212|ref|YP_004596319.1|	-	0.072	13.2	0.1	0.11	12.6	0.1	1.2	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
HTH_37	PF13744.6	gi|336253212|ref|YP_004596319.1|	-	0.096	12.7	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TRAM	PF01938.20	gi|336253213|ref|YP_004596320.1|	-	1.4e-08	34.6	0.0	2e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	TRAM	domain
FYDLN_acid	PF09538.10	gi|336253213|ref|YP_004596320.1|	-	0.026	15.2	6.6	0.55	10.9	6.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
CDC45	PF02724.14	gi|336253213|ref|YP_004596320.1|	-	0.28	9.4	3.2	0.29	9.4	3.2	1.1	1	0	0	1	1	1	0	CDC45-like	protein
ETF	PF01012.21	gi|336253214|ref|YP_004596321.1|	-	8.7e-40	136.5	1.9	8.7e-40	136.5	1.9	1.4	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|336253215|ref|YP_004596322.1|	-	8.8e-36	121.8	0.1	1.7e-35	120.9	0.1	1.5	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|336253215|ref|YP_004596322.1|	-	4.4e-33	114.7	3.0	6.6e-33	114.1	3.0	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
PBP_like	PF12727.7	gi|336253215|ref|YP_004596322.1|	-	0.032	13.4	0.1	1.1	8.4	0.0	2.2	2	0	0	2	2	2	0	PBP	superfamily	domain
MCPsignal	PF00015.21	gi|336253216|ref|YP_004596323.1|	-	5.8e-34	117.4	60.5	8.7e-34	116.8	24.1	4.5	1	1	3	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|336253216|ref|YP_004596323.1|	-	1.2e-10	41.6	13.8	7.2e-09	35.9	0.0	5.0	6	1	0	6	6	6	2	HAMP	domain
DUF948	PF06103.11	gi|336253216|ref|YP_004596323.1|	-	0.00026	21.2	41.5	0.0057	16.9	3.3	6.5	2	2	3	6	6	6	3	Bacterial	protein	of	unknown	function	(DUF948)
LMBR1	PF04791.16	gi|336253216|ref|YP_004596323.1|	-	0.002	17.1	4.2	0.002	17.1	4.2	2.5	1	1	1	2	2	2	1	LMBR1-like	membrane	protein
Laminin_II	PF06009.12	gi|336253216|ref|YP_004596323.1|	-	0.021	14.8	48.6	0.15	12.0	3.3	6.0	2	1	3	6	6	6	0	Laminin	Domain	II
Spc7	PF08317.11	gi|336253216|ref|YP_004596323.1|	-	0.096	11.6	46.5	0.21	10.4	12.8	3.5	1	1	2	3	3	3	0	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|336253216|ref|YP_004596323.1|	-	0.22	11.5	33.5	0.026	14.5	2.5	5.5	2	2	5	7	7	7	0	Protein	of	unknown	function	(DUF1664)
GM_CSF	PF01109.17	gi|336253216|ref|YP_004596323.1|	-	0.34	11.1	1.1	1.3	9.2	1.1	2.0	1	0	0	1	1	1	0	Granulocyte-macrophage	colony-stimulating	factor
DUF2203	PF09969.9	gi|336253216|ref|YP_004596323.1|	-	0.57	10.9	38.0	0.21	12.3	3.1	5.2	2	2	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
MAD	PF05557.13	gi|336253216|ref|YP_004596323.1|	-	1.3	7.3	44.3	0.025	13.0	23.0	2.2	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
Med9	PF07544.13	gi|336253216|ref|YP_004596323.1|	-	1.5	9.0	12.9	0.6	10.2	1.0	4.1	4	0	0	4	4	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Syntaxin_2	PF14523.6	gi|336253216|ref|YP_004596323.1|	-	2.2	8.7	16.2	33	4.9	0.0	5.4	1	1	3	4	4	4	0	Syntaxin-like	protein
Seryl_tRNA_N	PF02403.22	gi|336253216|ref|YP_004596323.1|	-	3.1	8.1	40.9	2.2	8.5	1.4	5.8	2	2	2	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
ERM	PF00769.19	gi|336253216|ref|YP_004596323.1|	-	3.2	7.5	63.3	0.034	14.0	15.5	3.4	1	1	2	3	3	3	0	Ezrin/radixin/moesin	family
TMPIT	PF07851.13	gi|336253216|ref|YP_004596323.1|	-	3.7	6.7	28.8	0.2	10.8	3.0	4.3	1	1	3	5	5	5	0	TMPIT-like	protein
XH	PF03469.14	gi|336253216|ref|YP_004596323.1|	-	4.7	7.1	6.2	6.3	6.7	0.3	2.9	2	0	0	2	2	2	0	XH	domain
Fib_alpha	PF08702.10	gi|336253216|ref|YP_004596323.1|	-	4.9	7.3	26.8	2.5	8.3	3.4	4.7	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
NPV_P10	PF05531.12	gi|336253216|ref|YP_004596323.1|	-	7.5	7.1	27.1	1.6	9.3	1.5	6.2	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
TMP_2	PF06791.13	gi|336253216|ref|YP_004596323.1|	-	7.5	6.2	39.0	3.4	7.3	13.8	3.9	2	2	1	3	3	3	0	Prophage	tail	length	tape	measure	protein
polyprenyl_synt	PF00348.17	gi|336253217|ref|YP_004596324.1|	-	6.5e-54	182.7	0.0	7.8e-54	182.4	0.0	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
DUF373	PF04123.13	gi|336253218|ref|YP_004596325.1|	-	5.3e-119	397.6	6.2	6.1e-119	397.4	6.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
EI24	PF07264.11	gi|336253218|ref|YP_004596325.1|	-	1.3	9.3	7.6	12	6.1	7.7	2.0	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
Radical_SAM	PF04055.21	gi|336253220|ref|YP_004596327.1|	-	2.6e-06	27.9	2.7	0.00026	21.4	0.2	2.8	2	1	0	2	2	2	2	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|336253220|ref|YP_004596327.1|	-	0.00011	22.3	0.1	0.0002	21.5	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|336253220|ref|YP_004596327.1|	-	0.07	13.4	0.1	0.16	12.2	0.1	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
HypA	PF01155.19	gi|336253221|ref|YP_004596328.1|	-	0.0038	17.2	0.4	0.0047	16.9	0.4	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
ArfGap	PF01412.18	gi|336253221|ref|YP_004596328.1|	-	0.011	15.8	0.3	0.014	15.5	0.3	1.1	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
Rubredoxin_2	PF18073.1	gi|336253221|ref|YP_004596328.1|	-	0.028	14.1	2.8	3.1	7.6	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc-ribbon_6	PF10005.9	gi|336253221|ref|YP_004596328.1|	-	0.031	14.9	0.0	0.04	14.6	0.0	1.1	1	0	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|336253221|ref|YP_004596328.1|	-	0.037	14.0	0.6	1.2	9.1	0.1	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|336253221|ref|YP_004596328.1|	-	0.052	13.1	7.0	1.3	8.6	0.6	2.9	1	1	2	3	3	3	0	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|336253221|ref|YP_004596328.1|	-	0.075	12.6	0.3	5	6.8	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF1258	PF06869.12	gi|336253221|ref|YP_004596328.1|	-	0.098	12.1	0.2	0.11	11.9	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1258)
zinc_ribbon_2	PF13240.6	gi|336253221|ref|YP_004596328.1|	-	0.24	11.2	3.6	0.36	10.6	3.6	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336253221|ref|YP_004596328.1|	-	0.44	10.7	2.0	1.2	9.3	2.0	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
HTH_IclR	PF09339.10	gi|336253222|ref|YP_004596329.1|	-	0.058	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MDMPI_N	PF11716.8	gi|336253223|ref|YP_004596330.1|	-	0.033	14.9	0.9	0.069	13.8	0.9	1.5	1	0	0	1	1	1	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
Pilin_N	PF07790.11	gi|336253224|ref|YP_004596331.1|	-	3e-09	37.7	2.5	4.6e-09	37.1	2.5	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Methyltransf_11	PF08241.12	gi|336253225|ref|YP_004596332.1|	-	8.5e-25	87.2	0.0	1.4e-24	86.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336253225|ref|YP_004596332.1|	-	1.3e-24	86.7	0.0	1.9e-24	86.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336253225|ref|YP_004596332.1|	-	6.1e-19	68.3	0.0	3.1e-14	52.9	0.0	2.1	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|336253225|ref|YP_004596332.1|	-	7.3e-19	68.1	0.0	8.7e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336253225|ref|YP_004596332.1|	-	2.3e-15	57.1	0.0	3.3e-15	56.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336253225|ref|YP_004596332.1|	-	3.4e-15	56.3	0.0	4.8e-15	55.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336253225|ref|YP_004596332.1|	-	6.9e-07	29.2	0.0	8.7e-07	28.9	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_9	PF08003.11	gi|336253225|ref|YP_004596332.1|	-	3e-05	23.1	0.0	4e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
RrnaAD	PF00398.20	gi|336253225|ref|YP_004596332.1|	-	3.1e-05	23.2	0.0	3.9e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_29	PF03141.16	gi|336253225|ref|YP_004596332.1|	-	4.8e-05	22.1	0.0	6.1e-05	21.8	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MetW	PF07021.12	gi|336253225|ref|YP_004596332.1|	-	0.00032	20.4	0.0	0.00041	20.0	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|336253225|ref|YP_004596332.1|	-	0.00042	19.9	0.0	0.0017	18.0	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.20	gi|336253225|ref|YP_004596332.1|	-	0.0038	16.5	0.0	0.0057	16.0	0.0	1.4	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
DREV	PF05219.12	gi|336253225|ref|YP_004596332.1|	-	0.0041	16.2	0.0	0.0064	15.6	0.0	1.4	1	1	0	1	1	1	1	DREV	methyltransferase
Methyltransf_2	PF00891.18	gi|336253225|ref|YP_004596332.1|	-	0.005	16.2	0.0	0.01	15.1	0.0	1.4	1	1	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_33	PF10017.9	gi|336253225|ref|YP_004596332.1|	-	0.035	13.3	0.0	0.093	11.9	0.0	1.6	2	1	0	2	2	2	0	Histidine-specific	methyltransferase,	SAM-dependent
Methyltransf_32	PF13679.6	gi|336253225|ref|YP_004596332.1|	-	0.057	13.4	0.0	0.075	13.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
FtsJ	PF01728.19	gi|336253225|ref|YP_004596332.1|	-	0.058	13.5	0.0	0.074	13.1	0.0	1.4	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_PK	PF05891.12	gi|336253225|ref|YP_004596332.1|	-	0.064	12.8	0.0	0.077	12.5	0.0	1.1	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Methyltransf_8	PF05148.15	gi|336253225|ref|YP_004596332.1|	-	0.074	12.9	0.0	0.44	10.4	0.0	1.9	1	1	0	1	1	1	0	Hypothetical	methyltransferase
NodS	PF05401.11	gi|336253225|ref|YP_004596332.1|	-	0.13	11.8	0.0	0.17	11.5	0.0	1.1	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
ATP-synt_B	PF00430.18	gi|336253226|ref|YP_004596333.1|	-	2.3e-05	24.5	20.4	3.3e-05	24.0	20.4	1.3	1	0	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
V-ATPase_G_2	PF16999.5	gi|336253226|ref|YP_004596333.1|	-	7e-05	23.2	25.3	0.00011	22.6	25.3	1.3	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
vATP-synt_E	PF01991.18	gi|336253226|ref|YP_004596333.1|	-	0.0013	18.2	13.3	0.0013	18.2	13.3	2.2	1	1	1	2	2	2	1	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G	PF03179.15	gi|336253226|ref|YP_004596333.1|	-	0.0013	19.2	20.6	0.059	13.9	20.0	2.1	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
HrpE	PF06188.12	gi|336253226|ref|YP_004596333.1|	-	0.0062	16.4	12.5	0.012	15.5	12.5	1.5	1	1	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DUF883	PF05957.13	gi|336253226|ref|YP_004596333.1|	-	0.008	16.8	17.7	0.42	11.2	7.0	2.1	1	1	1	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF883)
DivIVA	PF05103.13	gi|336253226|ref|YP_004596333.1|	-	0.01	15.9	16.2	0.43	10.7	0.9	2.0	1	1	1	2	2	2	0	DivIVA	protein
DUF3552	PF12072.8	gi|336253226|ref|YP_004596333.1|	-	0.022	14.1	26.1	0.24	10.8	19.5	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
PIN_8	PF18476.1	gi|336253226|ref|YP_004596333.1|	-	0.058	13.2	6.4	0.064	13.1	6.4	1.1	1	0	0	1	1	1	0	PIN	like	domain
dCache_2	PF08269.11	gi|336253226|ref|YP_004596333.1|	-	0.072	12.3	2.4	0.059	12.5	1.3	1.4	1	1	0	1	1	1	0	Cache	domain
Apolipoprotein	PF01442.18	gi|336253226|ref|YP_004596333.1|	-	0.08	12.8	22.5	0.11	12.3	22.5	1.2	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF3435	PF11917.8	gi|336253226|ref|YP_004596333.1|	-	0.3	10.0	8.7	0.34	9.8	8.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
DUF4407	PF14362.6	gi|336253226|ref|YP_004596333.1|	-	0.4	10.0	11.4	0.44	9.8	11.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Inositol_P	PF00459.25	gi|336253226|ref|YP_004596333.1|	-	0.43	10.1	5.0	0.46	10.0	5.0	1.1	1	0	0	1	1	1	0	Inositol	monophosphatase	family
YtxH	PF12732.7	gi|336253226|ref|YP_004596333.1|	-	0.49	11.0	10.8	1.6	9.3	0.6	2.3	1	1	1	2	2	2	0	YtxH-like	protein
Histidinol_dh	PF00815.20	gi|336253226|ref|YP_004596333.1|	-	0.61	9.0	6.6	0.67	8.9	6.6	1.0	1	0	0	1	1	1	0	Histidinol	dehydrogenase
GBP_C	PF02841.14	gi|336253226|ref|YP_004596333.1|	-	0.71	9.2	13.4	0.79	9.1	13.4	1.0	1	0	0	1	1	1	0	Guanylate-binding	protein,	C-terminal	domain
Golgin_A5	PF09787.9	gi|336253226|ref|YP_004596333.1|	-	0.74	9.2	15.6	0.86	9.0	15.6	1.0	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
Remorin_C	PF03763.13	gi|336253226|ref|YP_004596333.1|	-	0.74	9.7	16.3	0.21	11.5	5.2	2.1	1	1	1	2	2	2	0	Remorin,	C-terminal	region
Merozoite_SPAM	PF07133.11	gi|336253226|ref|YP_004596333.1|	-	0.88	9.5	20.9	1.1	9.2	20.9	1.1	1	0	0	1	1	1	0	Merozoite	surface	protein	(SPAM)
CdvA	PF18822.1	gi|336253226|ref|YP_004596333.1|	-	0.99	9.2	13.4	0.81	9.5	1.8	2.1	1	1	1	2	2	2	0	CdvA-like	coiled-coil	domain
Caudo_TAP	PF02413.17	gi|336253226|ref|YP_004596333.1|	-	1	9.5	12.8	2.2	8.4	8.7	2.5	1	1	1	2	2	2	0	Caudovirales	tail	fibre	assembly	protein,	lambda	gpK
Peptidase_M41	PF01434.18	gi|336253226|ref|YP_004596333.1|	-	1.3	8.8	8.0	1.2	9.0	0.8	2.0	1	1	1	2	2	2	0	Peptidase	family	M41
Borrelia_P83	PF05262.11	gi|336253226|ref|YP_004596333.1|	-	1.6	7.1	12.7	1.8	6.9	12.7	1.0	1	0	0	1	1	1	0	Borrelia	P83/100	protein
OmpH	PF03938.14	gi|336253226|ref|YP_004596333.1|	-	2.4	8.5	12.9	3.5	8.0	12.9	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
HSP70	PF00012.20	gi|336253226|ref|YP_004596333.1|	-	7	4.7	12.5	8.5	4.4	12.5	1.0	1	0	0	1	1	1	0	Hsp70	protein
V_ATPase_I	PF01496.19	gi|336253227|ref|YP_004596334.1|	-	1.5e-23	82.7	10.6	5.1e-11	41.3	1.8	5.1	4	2	0	5	5	5	3	V-type	ATPase	116kDa	subunit	family
Prefoldin_2	PF01920.20	gi|336253227|ref|YP_004596334.1|	-	0.0011	18.9	0.9	0.2	11.6	0.2	2.3	2	0	0	2	2	2	1	Prefoldin	subunit
FlaC_arch	PF05377.11	gi|336253227|ref|YP_004596334.1|	-	0.0019	18.5	1.9	0.13	12.6	0.1	2.9	3	0	0	3	3	2	1	Flagella	accessory	protein	C	(FlaC)
Tektin	PF03148.14	gi|336253227|ref|YP_004596334.1|	-	0.0054	15.5	0.6	0.069	11.9	0.1	2.0	2	0	0	2	2	2	1	Tektin	family
DUF4140	PF13600.6	gi|336253227|ref|YP_004596334.1|	-	0.07	13.6	6.2	1.6	9.2	2.6	2.6	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Spc24	PF08286.11	gi|336253227|ref|YP_004596334.1|	-	0.074	13.3	2.4	3.4	8.0	0.1	2.4	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
MscS_porin	PF12795.7	gi|336253227|ref|YP_004596334.1|	-	0.081	12.5	2.1	0.39	10.2	0.4	2.1	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
DUF3450	PF11932.8	gi|336253227|ref|YP_004596334.1|	-	0.093	12.0	0.4	1.6	8.0	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
EMP24_GP25L	PF01105.24	gi|336253227|ref|YP_004596334.1|	-	0.11	12.4	0.4	0.77	9.7	0.0	2.1	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
CENP-F_leu_zip	PF10473.9	gi|336253227|ref|YP_004596334.1|	-	0.15	12.1	6.1	1.8	8.6	0.5	2.3	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF1664	PF07889.12	gi|336253227|ref|YP_004596334.1|	-	0.16	12.0	1.1	6.7	6.8	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|336253227|ref|YP_004596334.1|	-	0.36	9.7	2.8	0.85	8.4	0.2	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
Apolipoprotein	PF01442.18	gi|336253227|ref|YP_004596334.1|	-	0.62	9.9	6.3	0.44	10.4	1.8	2.1	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
XhlA	PF10779.9	gi|336253227|ref|YP_004596334.1|	-	0.67	10.2	5.4	2.8	8.2	1.5	2.7	2	0	0	2	2	2	0	Haemolysin	XhlA
Helo_like_N	PF17111.5	gi|336253227|ref|YP_004596334.1|	-	1	8.7	2.5	1.3	8.3	0.1	2.0	2	0	0	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
Filament	PF00038.21	gi|336253227|ref|YP_004596334.1|	-	2.1	7.9	6.3	13	5.2	6.3	1.9	1	1	0	1	1	1	0	Intermediate	filament	protein
Ax_dynein_light	PF10211.9	gi|336253227|ref|YP_004596334.1|	-	2.3	8.1	4.5	18	5.2	0.3	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
CCDC-167	PF15188.6	gi|336253227|ref|YP_004596334.1|	-	5.4	7.4	5.2	24	5.4	0.4	2.5	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
ATP-synt_C	PF00137.21	gi|336253228|ref|YP_004596335.1|	-	4.2e-13	49.4	8.0	5.4e-13	49.1	8.0	1.2	1	0	0	1	1	1	1	ATP	synthase	subunit	C
vATP-synt_E	PF01991.18	gi|336253229|ref|YP_004596336.1|	-	1.5e-41	142.0	10.1	2.1e-41	141.6	10.1	1.2	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
V_ATPase_I	PF01496.19	gi|336253229|ref|YP_004596336.1|	-	0.0057	14.7	1.6	0.0061	14.6	1.6	1.0	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
DUF3535	PF12054.8	gi|336253229|ref|YP_004596336.1|	-	0.088	12.0	1.7	0.12	11.6	1.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
Peptidase_C58	PF03543.14	gi|336253229|ref|YP_004596336.1|	-	0.16	11.6	1.7	0.24	11.1	1.7	1.3	1	0	0	1	1	1	0	Yersinia/Haemophilus	virulence	surface	antigen
OmpH	PF03938.14	gi|336253229|ref|YP_004596336.1|	-	0.23	11.8	9.0	0.41	11.0	9.0	1.5	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
HAUS5	PF14817.6	gi|336253229|ref|YP_004596336.1|	-	0.28	9.9	10.3	0.36	9.5	10.3	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	5
Nbl1_Borealin_N	PF10444.9	gi|336253229|ref|YP_004596336.1|	-	0.3	10.8	7.5	0.22	11.2	0.3	2.6	1	1	1	2	2	2	0	Nbl1	/	Borealin	N	terminal
HAUS-augmin3	PF14932.6	gi|336253229|ref|YP_004596336.1|	-	0.4	10.2	9.6	0.57	9.7	9.6	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
V-ATPase_G	PF03179.15	gi|336253229|ref|YP_004596336.1|	-	0.49	11.0	14.5	0.23	12.0	12.1	1.7	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
HSP70	PF00012.20	gi|336253229|ref|YP_004596336.1|	-	2.1	6.4	8.0	2.4	6.2	8.0	1.1	1	0	0	1	1	1	0	Hsp70	protein
MRP-S26	PF14943.6	gi|336253229|ref|YP_004596336.1|	-	3.6	7.5	13.1	5.7	6.8	13.1	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosome	subunit	S26
Phasin	PF05597.11	gi|336253229|ref|YP_004596336.1|	-	4.1	7.4	13.3	2.9	7.9	7.0	2.5	2	1	1	3	3	3	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF883	PF05957.13	gi|336253229|ref|YP_004596336.1|	-	6.1	7.5	15.8	2.7	8.7	2.2	2.8	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
vATP-synt_AC39	PF01992.16	gi|336253230|ref|YP_004596337.1|	-	8.1e-82	275.4	5.9	9.1e-82	275.2	5.9	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
ATP-synt_F	PF01990.17	gi|336253231|ref|YP_004596338.1|	-	2.6e-15	56.5	0.1	3e-15	56.3	0.1	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
ATP-synt_ab	PF00006.25	gi|336253232|ref|YP_004596339.1|	-	3.3e-92	308.0	0.0	4.3e-92	307.6	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|336253232|ref|YP_004596339.1|	-	1.8e-39	134.4	0.1	3.1e-39	133.6	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|336253232|ref|YP_004596339.1|	-	1.1e-11	45.1	3.9	1.1e-11	45.1	3.9	2.3	3	0	0	3	3	3	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|336253232|ref|YP_004596339.1|	-	0.027	14.8	0.0	0.08	13.2	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
QRPTase_N	PF02749.16	gi|336253232|ref|YP_004596339.1|	-	0.15	12.1	0.3	16	5.7	0.0	2.8	3	0	0	3	3	3	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Npun_R1517	PF18068.1	gi|336253232|ref|YP_004596339.1|	-	0.15	12.4	0.0	0.45	10.9	0.0	1.7	1	0	0	1	1	1	0	Npun	R1517
ATP-synt_ab	PF00006.25	gi|336253233|ref|YP_004596340.1|	-	7.7e-66	221.8	0.0	1.2e-65	221.2	0.0	1.3	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|336253233|ref|YP_004596340.1|	-	5.5e-14	52.4	1.2	1.5e-13	51.0	1.2	1.8	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|336253233|ref|YP_004596340.1|	-	0.0013	18.8	0.5	0.0042	17.2	0.5	2.0	1	0	0	1	1	1	1	HAS	barrel	domain
zinc_ribbon_13	PF09855.9	gi|336253235|ref|YP_004596342.1|	-	4.1e-29	100.5	0.4	4.5e-29	100.4	0.4	1.0	1	0	0	1	1	1	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Lar_restr_allev	PF14354.6	gi|336253235|ref|YP_004596342.1|	-	0.0012	19.1	0.3	0.0016	18.8	0.3	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.12	gi|336253235|ref|YP_004596342.1|	-	0.0026	17.2	0.6	0.32	10.5	0.1	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|336253235|ref|YP_004596342.1|	-	0.0049	16.5	3.4	1	9.1	0.5	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253235|ref|YP_004596342.1|	-	0.005	16.2	2.3	0.56	9.7	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|336253235|ref|YP_004596342.1|	-	0.0056	16.5	1.2	0.87	9.5	0.1	2.3	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
A2L_zn_ribbon	PF08792.10	gi|336253235|ref|YP_004596342.1|	-	0.0062	16.2	0.6	1.9	8.3	0.0	2.3	2	0	0	2	2	2	2	A2L	zinc	ribbon	domain
CpXC	PF14353.6	gi|336253235|ref|YP_004596342.1|	-	0.007	16.4	0.1	0.01	15.9	0.1	1.2	1	0	0	1	1	1	1	CpXC	protein
DUF2387	PF09526.10	gi|336253235|ref|YP_004596342.1|	-	0.0093	16.1	1.2	0.53	10.5	1.2	2.1	1	1	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|336253235|ref|YP_004596342.1|	-	0.011	15.7	2.9	1.6	8.8	0.5	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DZR	PF12773.7	gi|336253235|ref|YP_004596342.1|	-	0.014	15.4	0.2	0.019	15.0	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|336253235|ref|YP_004596342.1|	-	0.015	15.4	0.8	0.92	9.7	0.3	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-IS66	PF13005.7	gi|336253235|ref|YP_004596342.1|	-	0.016	15.6	1.4	0.09	13.2	0.0	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Ribosomal_S27e	PF01667.17	gi|336253235|ref|YP_004596342.1|	-	0.047	13.4	0.9	3.5	7.4	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S27
Elf1	PF05129.13	gi|336253235|ref|YP_004596342.1|	-	0.074	13.1	0.6	0.3	11.2	0.6	1.8	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
DNA_RNApol_7kD	PF03604.13	gi|336253235|ref|YP_004596342.1|	-	0.11	12.1	2.8	1	9.1	0.1	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
GcpE	PF04551.14	gi|336253235|ref|YP_004596342.1|	-	0.12	11.5	0.5	1.7	7.7	0.0	1.9	1	1	1	2	2	2	0	GcpE	protein
Zn_Tnp_IS91	PF14319.6	gi|336253235|ref|YP_004596342.1|	-	0.21	11.7	2.3	2.8	8.0	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|336253235|ref|YP_004596342.1|	-	0.42	10.6	2.4	3.7	7.5	2.4	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.6	gi|336253235|ref|YP_004596342.1|	-	0.72	9.8	5.7	7.2	6.6	0.3	2.4	2	1	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|336253235|ref|YP_004596342.1|	-	0.91	9.7	5.5	12	6.1	1.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-HYPF	PF07503.12	gi|336253235|ref|YP_004596342.1|	-	5.8	6.8	8.6	1	9.2	0.8	2.5	2	1	0	2	2	2	0	HypF	finger
ATP-synt_D	PF01813.17	gi|336253236|ref|YP_004596343.1|	-	4.5e-53	180.0	8.8	4.5e-53	180.0	8.8	1.5	2	0	0	2	2	2	1	ATP	synthase	subunit	D
DUF1168	PF06658.12	gi|336253236|ref|YP_004596343.1|	-	2.4	8.0	18.3	4.2	7.2	15.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1168)
RICH	PF05062.12	gi|336253236|ref|YP_004596343.1|	-	4.5	7.7	14.2	1.3e+02	3.0	14.2	2.7	1	1	0	1	1	1	0	RICH	domain
DZR	PF12773.7	gi|336253237|ref|YP_004596344.1|	-	0.25	11.4	2.5	0.56	10.3	2.5	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.6	gi|336253237|ref|YP_004596344.1|	-	0.27	10.6	1.3	9.3	5.7	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.10	gi|336253237|ref|YP_004596344.1|	-	0.42	10.8	2.4	15	5.8	0.2	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
PvlArgDC	PF01862.16	gi|336253239|ref|YP_004596346.1|	-	1.3e-38	132.4	0.1	1.4e-38	132.2	0.1	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
AAA	PF00004.29	gi|336253240|ref|YP_004596347.1|	-	5.2e-45	153.1	1.1	1.1e-44	152.1	0.1	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|336253240|ref|YP_004596347.1|	-	8e-16	57.6	0.3	2.9e-15	55.8	0.3	2.0	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|336253240|ref|YP_004596347.1|	-	1.7e-08	34.8	0.0	4.8e-08	33.3	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|336253240|ref|YP_004596347.1|	-	9.4e-07	28.7	0.0	4.3e-06	26.6	0.0	2.1	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|336253240|ref|YP_004596347.1|	-	2.1e-06	27.8	2.1	5.1e-06	26.5	0.2	2.6	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|336253240|ref|YP_004596347.1|	-	8.3e-06	26.3	1.8	0.00016	22.1	0.1	3.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336253240|ref|YP_004596347.1|	-	2.6e-05	24.5	2.6	0.0011	19.3	0.5	3.1	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|336253240|ref|YP_004596347.1|	-	5e-05	23.8	0.4	0.0043	17.6	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
Prot_ATP_ID_OB	PF16450.5	gi|336253240|ref|YP_004596347.1|	-	6e-05	22.9	2.8	6.2e-05	22.9	1.1	2.0	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	C-terminal	domain
DUF815	PF05673.13	gi|336253240|ref|YP_004596347.1|	-	0.00019	20.7	0.1	0.00049	19.3	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
AAA_13	PF13166.6	gi|336253240|ref|YP_004596347.1|	-	0.00076	18.3	0.4	0.058	12.0	0.6	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.6	gi|336253240|ref|YP_004596347.1|	-	0.00096	19.4	1.2	0.0037	17.5	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|336253240|ref|YP_004596347.1|	-	0.0013	18.7	0.0	0.0036	17.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|336253240|ref|YP_004596347.1|	-	0.0015	17.9	0.0	0.003	16.8	0.0	1.5	1	0	0	1	1	1	1	TIP49	P-loop	domain
Prot_ATP_OB_N	PF17758.1	gi|336253240|ref|YP_004596347.1|	-	0.0015	18.2	0.9	0.0036	16.9	0.9	1.6	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	N-terminal	domain
Mg_chelatase	PF01078.21	gi|336253240|ref|YP_004596347.1|	-	0.0017	17.8	0.0	0.0039	16.6	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|336253240|ref|YP_004596347.1|	-	0.0039	16.9	0.2	0.013	15.2	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|336253240|ref|YP_004596347.1|	-	0.004	16.9	0.1	0.014	15.1	0.0	1.9	2	0	0	2	2	1	1	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.26	gi|336253240|ref|YP_004596347.1|	-	0.0043	16.8	0.1	0.071	12.8	0.0	2.4	2	1	0	2	2	2	1	Sigma-54	interaction	domain
AAA_33	PF13671.6	gi|336253240|ref|YP_004596347.1|	-	0.0044	17.2	0.0	0.011	15.9	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|336253240|ref|YP_004596347.1|	-	0.005	17.3	0.3	0.005	17.3	0.3	2.6	2	1	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|336253240|ref|YP_004596347.1|	-	0.008	15.4	0.0	0.044	13.0	0.0	2.1	2	1	0	2	2	1	1	NB-ARC	domain
RNA_helicase	PF00910.22	gi|336253240|ref|YP_004596347.1|	-	0.0094	16.3	0.0	0.019	15.3	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
NACHT	PF05729.12	gi|336253240|ref|YP_004596347.1|	-	0.011	15.7	1.0	0.099	12.6	0.1	2.6	3	0	0	3	3	2	0	NACHT	domain
AAA_7	PF12775.7	gi|336253240|ref|YP_004596347.1|	-	0.013	15.0	0.0	0.036	13.6	0.0	1.6	2	0	0	2	2	1	0	P-loop	containing	dynein	motor	region
DUF3287	PF11690.8	gi|336253240|ref|YP_004596347.1|	-	0.015	15.1	0.6	0.059	13.1	0.8	1.9	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3287)
AAA_11	PF13086.6	gi|336253240|ref|YP_004596347.1|	-	0.017	15.0	0.6	0.22	11.2	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
APG6_N	PF17675.1	gi|336253240|ref|YP_004596347.1|	-	0.018	15.6	2.5	0.06	13.9	2.5	1.8	1	0	0	1	1	1	0	Apg6	coiled-coil	region
Parvo_NS1	PF01057.17	gi|336253240|ref|YP_004596347.1|	-	0.027	13.6	0.2	0.064	12.3	0.0	1.6	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
AAA_3	PF07726.11	gi|336253240|ref|YP_004596347.1|	-	0.039	13.8	0.0	0.076	12.9	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|336253240|ref|YP_004596347.1|	-	0.04	13.8	1.1	0.19	11.6	0.1	2.4	2	1	0	2	2	1	0	ATPase	domain	predominantly	from	Archaea
TsaE	PF02367.17	gi|336253240|ref|YP_004596347.1|	-	0.042	13.9	0.0	0.078	13.0	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|336253240|ref|YP_004596347.1|	-	0.044	14.3	0.2	0.37	11.3	0.0	2.4	2	0	0	2	2	2	0	ABC	transporter
GAS	PF13851.6	gi|336253240|ref|YP_004596347.1|	-	0.047	13.0	3.2	0.088	12.2	3.2	1.4	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
TniB	PF05621.11	gi|336253240|ref|YP_004596347.1|	-	0.055	12.9	0.0	1.7	8.0	0.0	2.4	1	1	1	2	2	2	0	Bacterial	TniB	protein
ATPase	PF06745.13	gi|336253240|ref|YP_004596347.1|	-	0.087	12.2	6.1	0.18	11.2	0.5	3.0	2	1	0	2	2	2	0	KaiC
ZapB	PF06005.12	gi|336253240|ref|YP_004596347.1|	-	0.15	12.5	8.1	0.041	14.3	4.0	2.2	3	0	0	3	3	1	0	Cell	division	protein	ZapB
AAA_25	PF13481.6	gi|336253240|ref|YP_004596347.1|	-	0.21	11.1	0.1	0.21	11.1	0.1	3.3	2	1	1	3	3	3	0	AAA	domain
Med28	PF11594.8	gi|336253240|ref|YP_004596347.1|	-	0.23	11.5	2.4	2.9	8.0	1.6	2.6	2	1	0	2	2	2	0	Mediator	complex	subunit	28
CENP-Q	PF13094.6	gi|336253240|ref|YP_004596347.1|	-	0.56	10.4	9.5	4.1	7.6	9.5	2.2	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
NTPase_1	PF03266.15	gi|336253240|ref|YP_004596347.1|	-	0.57	10.1	0.1	0.57	10.1	0.1	2.9	4	1	1	5	5	4	0	NTPase
AAA_23	PF13476.6	gi|336253240|ref|YP_004596347.1|	-	0.86	10.1	3.1	41	4.6	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
GvpL_GvpF	PF06386.11	gi|336253240|ref|YP_004596347.1|	-	1.4	8.8	9.0	1	9.2	0.4	2.5	1	1	1	2	2	2	0	Gas	vesicle	synthesis	protein	GvpL/GvpF
Peptidase_M3	PF01432.20	gi|336253241|ref|YP_004596348.1|	-	1e-67	229.4	4.1	1e-67	229.4	4.1	2.2	2	0	0	2	2	2	2	Peptidase	family	M3
Peptidase_M3_N	PF08439.10	gi|336253241|ref|YP_004596348.1|	-	7.5e-22	77.4	0.5	7.5e-22	77.4	0.5	3.3	3	0	0	3	3	3	1	Oligopeptidase	F
DASH_Dad2	PF08654.10	gi|336253241|ref|YP_004596348.1|	-	0.038	14.4	3.0	0.81	10.1	0.7	3.1	2	1	0	2	2	2	0	DASH	complex	subunit	Dad2
RmuC	PF02646.16	gi|336253241|ref|YP_004596348.1|	-	4.1	6.5	8.1	1.2	8.2	0.1	3.1	3	0	0	3	3	3	0	RmuC	family
Peptidase_M28	PF04389.17	gi|336253242|ref|YP_004596349.1|	-	3.1e-33	115.1	0.0	4.6e-33	114.6	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|336253242|ref|YP_004596349.1|	-	3.3e-10	39.8	0.5	6.3e-10	39.0	0.5	1.5	1	0	0	1	1	1	1	PA	domain
Peptidase_M20	PF01546.28	gi|336253242|ref|YP_004596349.1|	-	4.5e-05	23.2	0.5	0.00044	20.0	0.5	2.2	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M42	PF05343.14	gi|336253242|ref|YP_004596349.1|	-	0.014	14.4	0.3	0.024	13.7	0.3	1.3	1	0	0	1	1	1	0	M42	glutamyl	aminopeptidase
RlaP	PF10127.9	gi|336253244|ref|YP_004596351.1|	-	3e-27	95.8	0.0	4.1e-27	95.4	0.0	1.2	1	0	0	1	1	1	1	RNA	repair	pathway	DNA	polymerase	beta	family
Polbeta	PF18765.1	gi|336253244|ref|YP_004596351.1|	-	0.00041	20.4	0.0	0.00094	19.2	0.0	1.6	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|336253244|ref|YP_004596351.1|	-	0.04	14.2	0.0	0.066	13.5	0.0	1.4	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
Sulfolobus_pRN	PF05584.11	gi|336253244|ref|YP_004596351.1|	-	0.049	13.7	0.8	0.2	11.7	0.1	2.1	2	0	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
Hemerythrin	PF01814.23	gi|336253244|ref|YP_004596351.1|	-	0.089	13.4	0.4	0.54	10.9	0.0	2.3	2	0	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
Glutaredoxin	PF00462.24	gi|336253245|ref|YP_004596352.1|	-	3.5e-15	55.9	0.1	4.8e-15	55.5	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.6	gi|336253245|ref|YP_004596352.1|	-	2.7e-14	53.3	0.0	2.9e-14	53.2	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.6	gi|336253245|ref|YP_004596352.1|	-	7.2e-10	39.0	0.0	8.1e-10	38.9	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|336253245|ref|YP_004596352.1|	-	3.1e-05	24.2	0.0	3.3e-05	24.1	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|336253245|ref|YP_004596352.1|	-	0.001	19.4	0.1	0.0013	19.1	0.1	1.3	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
NTP_transf_3	PF12804.7	gi|336253245|ref|YP_004596352.1|	-	0.014	15.8	0.0	0.015	15.6	0.0	1.0	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Trans_coact	PF16805.5	gi|336253245|ref|YP_004596352.1|	-	0.16	12.1	0.1	0.3	11.2	0.1	1.4	1	0	0	1	1	1	0	Phage	late-transcription	coactivator
HIT	PF01230.23	gi|336253246|ref|YP_004596353.1|	-	1.7e-12	47.9	0.0	2.9e-12	47.2	0.0	1.3	1	0	0	1	1	1	1	HIT	domain
CwfJ_C_1	PF04677.15	gi|336253246|ref|YP_004596353.1|	-	1.7e-05	24.7	0.0	3.1e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DcpS_C	PF11969.8	gi|336253246|ref|YP_004596353.1|	-	7.3e-05	23.2	0.0	0.00013	22.4	0.0	1.4	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
NOB1_Zn_bind	PF08772.11	gi|336253247|ref|YP_004596354.1|	-	0.0023	18.1	1.6	0.3	11.3	0.1	2.1	1	1	1	2	2	2	2	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF983	PF06170.12	gi|336253247|ref|YP_004596354.1|	-	0.49	10.8	1.2	8	7.0	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
Peptidase_M24	PF00557.24	gi|336253248|ref|YP_004596355.1|	-	7.4e-43	146.7	0.8	9.5e-43	146.3	0.8	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Asparaginase_2	PF01112.18	gi|336253249|ref|YP_004596356.1|	-	2.4e-62	210.7	8.8	2.7e-62	210.5	8.8	1.0	1	0	0	1	1	1	1	Asparaginase
AbrB	PF05145.12	gi|336253250|ref|YP_004596357.1|	-	0.15	11.0	8.5	0.23	10.4	8.5	1.3	1	1	0	1	1	1	0	Transition	state	regulatory	protein	AbrB
PRA1	PF03208.19	gi|336253250|ref|YP_004596357.1|	-	0.73	9.4	5.3	0.89	9.2	5.3	1.1	1	0	0	1	1	1	0	PRA1	family	protein
DUF2613	PF11021.8	gi|336253250|ref|YP_004596357.1|	-	3.3	7.9	13.7	3.5	7.8	3.0	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2613)
Iso_dh	PF00180.20	gi|336253251|ref|YP_004596358.1|	-	5.4e-104	348.1	0.0	7.3e-104	347.6	0.0	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Acetyltransf_10	PF13673.7	gi|336253252|ref|YP_004596359.1|	-	1.3e-23	83.3	0.2	1.5e-23	83.2	0.2	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336253252|ref|YP_004596359.1|	-	6.1e-12	45.8	0.2	7.4e-12	45.5	0.2	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336253252|ref|YP_004596359.1|	-	1.2e-11	44.9	0.2	1.9e-11	44.2	0.2	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336253252|ref|YP_004596359.1|	-	4.4e-07	30.0	0.3	5.5e-07	29.7	0.3	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_5	PF13444.6	gi|336253252|ref|YP_004596359.1|	-	0.0038	17.9	2.0	0.0068	17.1	1.1	2.0	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336253252|ref|YP_004596359.1|	-	0.0076	16.4	0.2	0.013	15.6	0.2	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
FR47	PF08445.10	gi|336253252|ref|YP_004596359.1|	-	0.04	13.9	0.1	0.079	12.9	0.1	1.5	1	0	0	1	1	1	0	FR47-like	protein
Acetyltransf_13	PF13880.6	gi|336253252|ref|YP_004596359.1|	-	0.15	12.1	0.0	0.25	11.4	0.0	1.3	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
Nramp	PF01566.18	gi|336253253|ref|YP_004596360.1|	-	1.9e-61	208.1	29.0	1.9e-61	208.1	29.0	1.6	2	0	0	2	2	2	1	Natural	resistance-associated	macrophage	protein
Cupin_2	PF07883.11	gi|336253254|ref|YP_004596361.1|	-	1.3e-17	63.3	1.1	1.6e-17	63.0	1.1	1.1	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|336253254|ref|YP_004596361.1|	-	4.5e-05	23.4	0.7	6.1e-05	22.9	0.7	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|336253254|ref|YP_004596361.1|	-	0.028	14.0	0.0	0.037	13.6	0.0	1.2	1	0	0	1	1	1	0	Cupin
MannoseP_isomer	PF01050.18	gi|336253254|ref|YP_004596361.1|	-	0.1	12.5	0.0	0.13	12.1	0.0	1.1	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
CENP-C_C	PF11699.8	gi|336253254|ref|YP_004596361.1|	-	0.11	12.8	0.0	0.14	12.4	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
PaaX	PF07848.12	gi|336253255|ref|YP_004596362.1|	-	0.068	13.4	0.2	0.18	12.1	0.2	1.6	1	0	0	1	1	1	0	PaaX-like	protein
TerY_C	PF15616.6	gi|336253255|ref|YP_004596362.1|	-	0.078	13.1	0.3	0.12	12.5	0.3	1.3	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
HypA	PF01155.19	gi|336253255|ref|YP_004596362.1|	-	0.12	12.4	0.7	0.25	11.4	0.7	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS91	PF14319.6	gi|336253255|ref|YP_004596362.1|	-	0.13	12.4	0.7	0.19	11.8	0.7	1.3	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
CpXC	PF14353.6	gi|336253255|ref|YP_004596362.1|	-	0.14	12.2	0.5	0.24	11.5	0.3	1.8	1	1	0	1	1	1	0	CpXC	protein
RNA_POL_M_15KD	PF02150.16	gi|336253255|ref|YP_004596362.1|	-	0.16	11.9	1.0	0.33	10.9	1.0	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
zf-CSL	PF05207.13	gi|336253255|ref|YP_004596362.1|	-	0.21	11.3	2.3	4	7.2	0.4	2.6	2	0	0	2	2	2	0	CSL	zinc	finger
TFIIS_C	PF01096.18	gi|336253255|ref|YP_004596362.1|	-	0.22	11.4	2.8	0.93	9.4	0.5	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.6	gi|336253255|ref|YP_004596362.1|	-	0.25	11.3	1.5	23	5.0	0.3	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336253255|ref|YP_004596362.1|	-	0.47	10.6	2.5	1.2	9.3	2.5	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
HMG-CoA_red	PF00368.18	gi|336253256|ref|YP_004596363.1|	-	1.1e-131	439.2	4.3	1.3e-131	439.0	4.3	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Amidohydro_3	PF07969.11	gi|336253258|ref|YP_004596365.1|	-	6.9e-99	332.5	17.4	7.9e-99	332.2	17.4	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|336253258|ref|YP_004596365.1|	-	3e-19	69.5	0.4	6.5e-14	52.0	0.1	2.8	2	1	0	2	2	2	2	Amidohydrolase	family
DinB_2	PF12867.7	gi|336253258|ref|YP_004596365.1|	-	1.5	9.3	8.3	1.1	9.7	1.2	3.0	1	1	1	2	2	2	0	DinB	superfamily
HTH_10	PF04967.12	gi|336253259|ref|YP_004596366.1|	-	2.9e-19	68.6	0.5	1.5e-18	66.3	0.1	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253259|ref|YP_004596366.1|	-	4.2e-11	43.0	1.0	6.2e-11	42.4	1.0	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|336253259|ref|YP_004596366.1|	-	2.5e-06	27.3	0.2	1.1e-05	25.2	0.2	2.1	1	0	0	1	1	1	1	MarR	family
Sigma70_r4	PF04545.16	gi|336253259|ref|YP_004596366.1|	-	2.1e-05	23.9	0.1	6e-05	22.5	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336253259|ref|YP_004596366.1|	-	9.1e-05	21.9	0.0	0.00017	21.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|336253259|ref|YP_004596366.1|	-	0.00095	18.8	0.2	0.0019	17.8	0.2	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|336253259|ref|YP_004596366.1|	-	0.001	18.9	0.9	0.0027	17.5	0.9	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_AraC	PF00165.23	gi|336253259|ref|YP_004596366.1|	-	0.03	14.4	0.0	0.06	13.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HalOD1	PF18545.1	gi|336253260|ref|YP_004596367.1|	-	1.9e-13	50.5	4.6	3.3e-13	49.7	4.6	1.4	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF2267	PF10025.9	gi|336253261|ref|YP_004596368.1|	-	1.9e-35	121.8	0.5	2.3e-35	121.5	0.5	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
LTD	PF00932.19	gi|336253262|ref|YP_004596369.1|	-	3.2e-06	27.5	0.0	4e-06	27.2	0.0	1.1	1	0	0	1	1	1	1	Lamin	Tail	Domain
TAT_signal	PF10518.9	gi|336253262|ref|YP_004596369.1|	-	0.15	12.0	0.6	0.15	12.0	0.6	2.4	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
GFO_IDH_MocA	PF01408.22	gi|336253263|ref|YP_004596370.1|	-	1e-24	87.6	0.0	1.6e-24	87.0	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336253263|ref|YP_004596370.1|	-	6.7e-08	32.5	0.0	1.9e-07	31.1	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NadA	PF02445.16	gi|336253264|ref|YP_004596371.1|	-	2.8e-104	348.5	0.1	3.3e-104	348.3	0.1	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
FAD_binding_2	PF00890.24	gi|336253265|ref|YP_004596372.1|	-	2.7e-74	250.7	3.4	3.3e-74	250.4	3.4	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|336253265|ref|YP_004596372.1|	-	4.5e-12	45.8	1.6	4.7e-06	26.0	1.0	3.0	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|336253265|ref|YP_004596372.1|	-	1.5e-09	37.4	0.2	7.7e-07	28.5	0.3	2.2	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|336253265|ref|YP_004596372.1|	-	1.4e-08	34.5	6.2	8.8e-08	31.9	2.5	2.4	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|336253265|ref|YP_004596372.1|	-	1.9e-08	34.3	4.4	9.5e-08	32.0	0.8	2.6	1	1	0	3	3	3	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253265|ref|YP_004596372.1|	-	5.7e-05	23.3	0.4	0.00018	21.7	0.4	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Succ_DH_flav_C	PF02910.20	gi|336253265|ref|YP_004596372.1|	-	0.00015	21.7	0.0	0.00044	20.3	0.0	1.7	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
HI0933_like	PF03486.14	gi|336253265|ref|YP_004596372.1|	-	0.00026	19.8	0.2	0.017	13.8	0.6	2.1	2	0	0	2	2	2	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|336253265|ref|YP_004596372.1|	-	0.00065	19.1	0.2	0.0011	18.3	0.2	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|336253265|ref|YP_004596372.1|	-	0.0014	17.9	0.1	0.0027	17.0	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|336253265|ref|YP_004596372.1|	-	0.013	16.0	0.0	0.036	14.6	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336253265|ref|YP_004596372.1|	-	0.045	13.0	0.1	0.094	12.0	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336253265|ref|YP_004596372.1|	-	0.085	11.9	0.7	0.15	11.1	0.7	1.4	1	0	0	1	1	1	0	Lycopene	cyclase	protein
NAD_binding_7	PF13241.6	gi|336253265|ref|YP_004596372.1|	-	0.15	12.5	0.1	0.32	11.5	0.1	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|336253265|ref|YP_004596372.1|	-	0.17	11.5	0.0	0.35	10.5	0.0	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
QRPTase_C	PF01729.19	gi|336253266|ref|YP_004596373.1|	-	8.6e-56	188.3	2.1	1.1e-55	188.0	2.1	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|336253266|ref|YP_004596373.1|	-	3.3e-19	68.7	0.2	6.9e-19	67.7	0.2	1.6	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PTS_2-RNA	PF01885.16	gi|336253267|ref|YP_004596374.1|	-	8.2e-31	107.4	0.0	1e-30	107.1	0.0	1.0	1	0	0	1	1	1	1	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
TrkA_N	PF02254.18	gi|336253268|ref|YP_004596375.1|	-	2.6e-27	95.4	2.5	4.9e-27	94.5	2.5	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|336253268|ref|YP_004596375.1|	-	2.9e-13	49.5	0.2	2.8e-12	46.3	0.0	2.3	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|336253268|ref|YP_004596375.1|	-	8.1e-07	29.5	0.2	1.6e-06	28.6	0.2	1.6	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|336253268|ref|YP_004596375.1|	-	1.5e-06	28.5	0.4	2.5e-06	27.8	0.4	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_7	PF13241.6	gi|336253268|ref|YP_004596375.1|	-	3.6e-06	27.3	2.1	2.5e-05	24.6	0.3	2.4	2	1	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.6	gi|336253268|ref|YP_004596375.1|	-	3.5e-05	23.8	1.4	0.00017	21.5	1.6	2.0	1	1	1	2	2	2	1	NAD(P)H-binding
3HCDH_N	PF02737.18	gi|336253268|ref|YP_004596375.1|	-	7.7e-05	22.7	0.2	0.00012	22.0	0.2	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|336253268|ref|YP_004596375.1|	-	0.00015	21.1	1.2	0.00024	20.5	1.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NmrA	PF05368.13	gi|336253268|ref|YP_004596375.1|	-	0.00031	20.4	0.5	0.00069	19.2	0.5	1.5	1	1	0	1	1	1	1	NmrA-like	family
Shikimate_DH	PF01488.20	gi|336253268|ref|YP_004596375.1|	-	0.0029	17.7	0.2	0.0043	17.1	0.2	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Epimerase	PF01370.21	gi|336253268|ref|YP_004596375.1|	-	0.0036	16.8	0.2	0.0057	16.2	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
XdhC_C	PF13478.6	gi|336253268|ref|YP_004596375.1|	-	0.0089	16.5	0.1	0.019	15.5	0.1	1.6	1	0	0	1	1	1	1	XdhC	Rossmann	domain
NAD_binding_2	PF03446.15	gi|336253268|ref|YP_004596375.1|	-	0.01	16.0	0.1	0.023	14.8	0.0	1.7	2	0	0	2	2	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|336253268|ref|YP_004596375.1|	-	0.024	15.5	1.6	0.045	14.6	1.6	1.6	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
adh_short	PF00106.25	gi|336253268|ref|YP_004596375.1|	-	0.04	13.4	0.5	0.15	11.5	0.5	1.9	1	1	0	1	1	1	0	short	chain	dehydrogenase
ApbA	PF02558.16	gi|336253268|ref|YP_004596375.1|	-	0.041	13.5	0.0	0.067	12.8	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Peripla_BP_3	PF13377.6	gi|336253268|ref|YP_004596375.1|	-	0.065	13.6	0.4	0.13	12.6	0.2	1.6	2	0	0	2	2	2	0	Periplasmic	binding	protein-like	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336253268|ref|YP_004596375.1|	-	0.08	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkH	PF02386.16	gi|336253269|ref|YP_004596376.1|	-	3.7e-71	240.1	14.6	3e-70	237.1	14.6	2.0	1	1	0	1	1	1	1	Cation	transport	protein
DUF2871	PF11070.8	gi|336253269|ref|YP_004596376.1|	-	0.022	15.0	0.3	0.45	10.8	0.1	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2871)
Flp_Fap	PF04964.14	gi|336253269|ref|YP_004596376.1|	-	0.75	9.7	0.0	0.75	9.7	0.0	3.7	4	0	0	4	4	4	0	Flp/Fap	pilin	component
Fer4_15	PF13459.6	gi|336253270|ref|YP_004596377.1|	-	0.00037	21.2	3.1	0.00057	20.6	1.0	2.3	2	1	1	3	3	3	1	4Fe-4S	single	cluster	domain
adh_short	PF00106.25	gi|336253271|ref|YP_004596378.1|	-	1.3e-22	80.3	0.0	6.8e-22	77.9	0.0	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336253271|ref|YP_004596378.1|	-	3.7e-12	46.3	0.9	2.8e-11	43.4	0.9	2.0	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|336253271|ref|YP_004596378.1|	-	2.9e-07	30.6	0.1	4.9e-07	29.8	0.1	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336253271|ref|YP_004596378.1|	-	0.0004	19.9	0.0	0.00063	19.3	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|336253271|ref|YP_004596378.1|	-	0.026	13.6	0.1	0.038	13.1	0.1	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|336253271|ref|YP_004596378.1|	-	0.09	12.7	0.9	0.14	12.0	0.9	1.6	1	1	0	1	1	1	0	NAD(P)H-binding
MutL	PF13941.6	gi|336253271|ref|YP_004596378.1|	-	0.15	10.6	0.3	0.22	10.1	0.3	1.2	1	0	0	1	1	1	0	MutL	protein
PAS_4	PF08448.10	gi|336253272|ref|YP_004596379.1|	-	1.2e-79	263.7	38.3	7e-13	48.8	0.1	9.0	8	1	0	8	8	8	8	PAS	fold
PAS_9	PF13426.7	gi|336253272|ref|YP_004596379.1|	-	2.9e-58	194.6	0.0	6.9e-11	42.3	0.0	8.6	8	0	0	8	8	8	7	PAS	domain
PAS_3	PF08447.12	gi|336253272|ref|YP_004596379.1|	-	2.8e-52	174.9	1.7	4e-17	62.3	0.0	9.0	9	0	0	9	9	9	5	PAS	fold
PAS	PF00989.25	gi|336253272|ref|YP_004596379.1|	-	6.4e-44	148.6	2.9	4e-13	49.3	0.0	9.5	9	0	0	9	9	9	6	PAS	fold
HATPase_c	PF02518.26	gi|336253272|ref|YP_004596379.1|	-	6.4e-29	100.7	0.0	8.3e-28	97.1	0.0	2.4	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|336253272|ref|YP_004596379.1|	-	4.2e-22	77.7	6.9	5.9e-10	38.9	0.1	7.7	7	0	0	7	7	7	4	PAS	domain
PAS_7	PF12860.7	gi|336253272|ref|YP_004596379.1|	-	4.2e-11	43.0	4.3	0.019	15.1	0.0	8.0	7	1	0	7	7	7	2	PAS	fold
GAF_3	PF13492.6	gi|336253272|ref|YP_004596379.1|	-	1.6e-10	41.4	0.6	7.5e-10	39.2	0.2	2.4	3	0	0	3	3	2	1	GAF	domain
HisKA	PF00512.25	gi|336253272|ref|YP_004596379.1|	-	1.3e-09	38.0	0.1	1.3e-09	38.0	0.1	3.3	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|336253272|ref|YP_004596379.1|	-	1.7e-09	38.1	3.9	1.7e-09	38.1	3.9	4.4	5	0	0	5	5	5	1	GAF	domain
GAF	PF01590.26	gi|336253272|ref|YP_004596379.1|	-	1.9e-09	38.3	0.0	1.8e-08	35.1	0.4	2.6	3	0	0	3	3	2	1	GAF	domain
PAS_10	PF13596.6	gi|336253272|ref|YP_004596379.1|	-	4.1e-05	24.1	0.1	2.8	8.6	0.0	4.8	5	0	0	5	5	4	2	PAS	domain
sCache_3_3	PF17202.4	gi|336253272|ref|YP_004596379.1|	-	0.0018	18.6	0.1	0.93	9.9	0.0	3.5	3	0	0	3	3	3	1	Single	cache	domain	3
HATPase_c_5	PF14501.6	gi|336253272|ref|YP_004596379.1|	-	0.003	17.4	0.0	0.0062	16.4	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336253272|ref|YP_004596379.1|	-	0.0081	16.1	0.0	0.034	14.1	0.0	2.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_6	PF08348.11	gi|336253272|ref|YP_004596379.1|	-	0.013	15.4	0.0	1.1	9.1	0.0	3.5	3	1	0	3	3	3	0	YheO-like	PAS	domain
dCache_3	PF14827.6	gi|336253272|ref|YP_004596379.1|	-	0.093	12.4	0.0	3.4	7.2	0.0	2.7	2	0	0	2	2	2	0	Double	sensory	domain	of	two-component	sensor	kinase
Pro_isomerase	PF00160.21	gi|336253273|ref|YP_004596380.1|	-	8.7e-50	169.1	0.0	1.1e-49	168.8	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
Pro_isomerase	PF00160.21	gi|336253274|ref|YP_004596381.1|	-	1.6e-49	168.2	0.0	1.8e-49	168.1	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
AstE_AspA	PF04952.14	gi|336253275|ref|YP_004596382.1|	-	7.1e-34	117.2	0.0	8.3e-34	117.0	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.24	gi|336253275|ref|YP_004596382.1|	-	0.18	11.5	0.0	0.48	10.2	0.0	1.6	1	0	0	1	1	1	0	Zinc	carboxypeptidase
DUF3006	PF11213.8	gi|336253276|ref|YP_004596383.1|	-	0.001	19.3	5.1	0.0015	18.7	5.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
S-layer	PF07752.11	gi|336253276|ref|YP_004596383.1|	-	0.045	12.8	0.5	0.057	12.5	0.5	1.1	1	0	0	1	1	1	0	S-layer	protein
AAA_23	PF13476.6	gi|336253277|ref|YP_004596384.1|	-	3.7e-09	37.4	26.3	3.7e-09	37.4	26.3	5.6	1	1	2	3	3	2	1	AAA	domain
Spc7	PF08317.11	gi|336253277|ref|YP_004596384.1|	-	9.4e-06	24.7	81.0	0.0022	17.0	23.2	4.3	2	2	2	4	4	4	4	Spc7	kinetochore	protein
GAS	PF13851.6	gi|336253277|ref|YP_004596384.1|	-	0.00049	19.5	64.8	0.026	13.9	22.3	3.8	3	1	0	3	3	3	3	Growth-arrest	specific	micro-tubule	binding
NPV_P10	PF05531.12	gi|336253277|ref|YP_004596384.1|	-	0.0028	18.1	27.1	2.1	8.9	1.2	6.3	3	3	2	5	5	5	2	Nucleopolyhedrovirus	P10	protein
DUF3584	PF12128.8	gi|336253277|ref|YP_004596384.1|	-	0.013	13.0	60.4	0.054	11.0	29.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
DUF5082	PF16888.5	gi|336253277|ref|YP_004596384.1|	-	0.015	15.6	56.1	4.1	7.7	11.0	6.2	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF5082)
DHR10	PF18595.1	gi|336253277|ref|YP_004596384.1|	-	0.018	15.1	12.8	0.018	15.1	12.8	5.8	2	2	2	4	4	3	0	Designed	helical	repeat	protein	10	domain
Atg14	PF10186.9	gi|336253277|ref|YP_004596384.1|	-	0.022	13.9	58.8	0.027	13.6	15.8	3.9	2	2	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF4407	PF14362.6	gi|336253277|ref|YP_004596384.1|	-	0.055	12.8	56.4	0.38	10.1	4.7	3.9	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4407)
WXG100	PF06013.12	gi|336253277|ref|YP_004596384.1|	-	0.15	12.3	21.8	2.9	8.2	0.0	7.1	5	2	1	6	6	6	0	Proteins	of	100	residues	with	WXG
MitMem_reg	PF13012.6	gi|336253277|ref|YP_004596384.1|	-	0.17	12.3	0.2	0.17	12.3	0.2	4.2	3	2	1	4	4	3	0	Maintenance	of	mitochondrial	structure	and	function
Baculo_PEP_C	PF04513.12	gi|336253277|ref|YP_004596384.1|	-	0.18	11.9	20.9	3.4	7.7	0.9	5.0	2	2	2	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ALIX_LYPXL_bnd	PF13949.6	gi|336253277|ref|YP_004596384.1|	-	0.32	10.2	50.8	0.22	10.8	18.6	2.5	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
Laminin_II	PF06009.12	gi|336253277|ref|YP_004596384.1|	-	0.42	10.6	36.9	0.042	13.9	7.9	5.0	2	2	1	4	4	4	0	Laminin	Domain	II
FlxA	PF14282.6	gi|336253277|ref|YP_004596384.1|	-	0.79	9.7	54.1	0.23	11.5	3.2	5.4	3	1	2	5	5	5	0	FlxA-like	protein
CENP-F_leu_zip	PF10473.9	gi|336253277|ref|YP_004596384.1|	-	0.98	9.4	92.6	4.5	7.3	16.6	5.1	2	2	2	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
HemX	PF04375.14	gi|336253277|ref|YP_004596384.1|	-	1.3	8.3	43.5	0.022	14.0	7.8	4.2	2	2	1	4	4	4	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF1664	PF07889.12	gi|336253277|ref|YP_004596384.1|	-	1.3	9.0	43.6	1.8	8.6	7.8	5.1	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Spectrin	PF00435.21	gi|336253277|ref|YP_004596384.1|	-	2.1	8.9	61.7	2.8	8.5	4.3	6.1	2	2	4	6	6	6	0	Spectrin	repeat
DUF4201	PF13870.6	gi|336253277|ref|YP_004596384.1|	-	2.8	7.7	57.6	4.3	7.0	17.2	3.8	2	2	0	3	3	3	0	Domain	of	unknown	function	(DUF4201)
HIP1_clath_bdg	PF16515.5	gi|336253277|ref|YP_004596384.1|	-	2.9	8.6	74.8	1.1	10.0	19.3	6.4	3	2	3	6	6	6	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
MAD	PF05557.13	gi|336253277|ref|YP_004596384.1|	-	3	6.1	64.1	2.3	6.5	22.1	2.4	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
COG5	PF10392.9	gi|336253277|ref|YP_004596384.1|	-	3	8.0	29.0	0.041	14.0	2.8	4.4	3	1	0	4	4	4	0	Golgi	transport	complex	subunit	5
TPR_MLP1_2	PF07926.12	gi|336253277|ref|YP_004596384.1|	-	3.5	7.7	80.7	3.8	7.6	20.3	5.4	4	1	1	5	5	5	0	TPR/MLP1/MLP2-like	protein
Prefoldin	PF02996.17	gi|336253277|ref|YP_004596384.1|	-	3.7	7.5	61.3	0.2	11.6	3.7	9.2	3	3	8	11	11	11	0	Prefoldin	subunit
YPEB	PF14620.6	gi|336253277|ref|YP_004596384.1|	-	5	6.4	29.9	0.72	9.1	7.2	3.3	2	1	1	3	3	3	0	YpeB	sporulation
Seryl_tRNA_N	PF02403.22	gi|336253277|ref|YP_004596384.1|	-	5.7	7.2	66.8	0.32	11.2	7.2	5.7	2	2	3	5	5	4	0	Seryl-tRNA	synthetase	N-terminal	domain
Med9	PF07544.13	gi|336253277|ref|YP_004596384.1|	-	8.3	6.6	51.8	1.8	8.7	5.7	5.8	3	2	3	6	6	6	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Acyl-CoA_dh_1	PF00441.24	gi|336253278|ref|YP_004596385.1|	-	1e-33	116.6	1.3	1.8e-33	115.8	1.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|336253278|ref|YP_004596385.1|	-	2.5e-25	89.3	0.1	1.8e-24	86.6	0.1	2.3	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|336253278|ref|YP_004596385.1|	-	4.3e-24	84.5	0.0	8.4e-24	83.6	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|336253278|ref|YP_004596385.1|	-	9.9e-10	38.8	0.6	1.6e-09	38.2	0.6	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.8	gi|336253278|ref|YP_004596385.1|	-	0.0057	16.4	0.0	0.022	14.4	0.0	1.9	1	1	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
FAD-oxidase_C	PF02913.19	gi|336253279|ref|YP_004596386.1|	-	1.1e-63	215.3	0.0	2.2e-63	214.2	0.0	1.6	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|336253279|ref|YP_004596386.1|	-	5.5e-42	142.8	0.0	1.3e-41	141.6	0.0	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_8	PF13183.6	gi|336253279|ref|YP_004596386.1|	-	4.5e-09	36.6	4.4	1e-08	35.5	4.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336253279|ref|YP_004596386.1|	-	1.5e-08	35.1	3.8	2.9e-08	34.1	3.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|336253279|ref|YP_004596386.1|	-	4e-08	33.3	0.0	0.00014	22.0	0.1	2.7	2	0	0	2	2	2	2	Cysteine-rich	domain
Cytokin-bind	PF09265.10	gi|336253279|ref|YP_004596386.1|	-	4.1e-05	23.1	0.2	6.3e-05	22.5	0.2	1.2	1	0	0	1	1	1	1	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_10	PF13237.6	gi|336253279|ref|YP_004596386.1|	-	0.0035	17.4	4.7	0.022	14.9	5.3	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336253279|ref|YP_004596386.1|	-	0.0035	17.5	1.5	0.22	11.7	0.3	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|336253279|ref|YP_004596386.1|	-	0.045	13.9	1.9	0.51	10.5	0.3	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336253279|ref|YP_004596386.1|	-	2	9.1	8.1	13	6.4	8.1	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Glycos_transf_3	PF00591.21	gi|336253281|ref|YP_004596388.1|	-	5.3e-35	121.2	0.0	8.6e-35	120.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|336253281|ref|YP_004596388.1|	-	6.4e-09	35.5	0.1	5.9e-08	32.4	0.0	2.6	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
YfhO	PF09586.10	gi|336253282|ref|YP_004596389.1|	-	1.4	7.0	4.6	1.6	6.9	4.6	1.1	1	0	0	1	1	1	0	Bacterial	membrane	protein	YfhO
Mem_trans	PF03547.18	gi|336253282|ref|YP_004596389.1|	-	1.4	7.2	5.8	1.6	7.0	5.8	1.1	1	0	0	1	1	1	0	Membrane	transport	protein
FxsA	PF04186.13	gi|336253283|ref|YP_004596390.1|	-	5.9e-28	97.2	10.8	7.6e-28	96.8	10.8	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
DNA_ligase_IV	PF11411.8	gi|336253283|ref|YP_004596390.1|	-	0.28	11.3	1.1	0.45	10.7	1.1	1.2	1	0	0	1	1	1	0	DNA	ligase	IV
Thioredox_DsbH	PF03190.15	gi|336253284|ref|YP_004596391.1|	-	1.3e-24	87.0	0.0	2.6e-24	86.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|336253284|ref|YP_004596391.1|	-	1.4e-11	44.4	0.0	3.1e-11	43.3	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.20	gi|336253284|ref|YP_004596391.1|	-	1.9e-08	34.2	0.0	3.3e-08	33.4	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336253284|ref|YP_004596391.1|	-	6e-06	26.7	0.0	1e-05	25.9	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like	domain
GlcNAc_2-epim	PF07221.11	gi|336253284|ref|YP_004596391.1|	-	0.0037	16.6	1.2	1.9	7.6	0.1	2.2	2	0	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
RTP1_C1	PF10363.9	gi|336253284|ref|YP_004596391.1|	-	0.0068	16.6	0.0	0.028	14.6	0.0	2.0	2	0	0	2	2	2	1	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	1
Glyco_hydro_88	PF07470.13	gi|336253284|ref|YP_004596391.1|	-	0.0079	15.3	0.1	2.6	7.0	0.0	2.6	2	1	0	2	2	2	2	Glycosyl	Hydrolase	Family	88
Glyco_hydro_76	PF03663.14	gi|336253284|ref|YP_004596391.1|	-	0.023	14.2	0.1	5.9	6.3	0.0	2.2	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	76
C5-epim_C	PF06662.13	gi|336253284|ref|YP_004596391.1|	-	0.16	11.4	0.1	1.8	8.1	0.0	2.2	2	0	0	2	2	2	0	D-glucuronyl	C5-epimerase	C-terminus
TrmB	PF01978.19	gi|336253285|ref|YP_004596392.1|	-	2e-20	72.5	0.2	3.5e-20	71.6	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|336253285|ref|YP_004596392.1|	-	0.032	13.4	0.0	0.052	12.7	0.0	1.3	1	0	0	1	1	1	0	Archaeal	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|336253285|ref|YP_004596392.1|	-	0.12	12.3	0.0	0.26	11.3	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
PLDc_2	PF13091.6	gi|336253285|ref|YP_004596392.1|	-	0.17	11.8	0.0	0.34	10.8	0.0	1.5	1	0	0	1	1	1	0	PLD-like	domain
GCHY-1	PF02649.14	gi|336253286|ref|YP_004596393.1|	-	3.1e-76	256.3	3.0	3.5e-76	256.1	3.0	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
RecX	PF02631.16	gi|336253286|ref|YP_004596393.1|	-	0.042	14.3	0.6	1.2	9.6	0.0	2.7	3	0	0	3	3	3	0	RecX	family
PASTA	PF03793.19	gi|336253286|ref|YP_004596393.1|	-	0.072	13.0	0.0	0.21	11.4	0.0	1.8	1	0	0	1	1	1	0	PASTA	domain
LppX_LprAFG	PF07161.13	gi|336253287|ref|YP_004596394.1|	-	0.0052	16.7	0.0	0.019	14.8	0.0	1.9	2	1	0	2	2	2	1	LppX_LprAFG	lipoprotein
Adeno_PIX	PF03955.14	gi|336253287|ref|YP_004596394.1|	-	0.01	16.0	0.2	0.46	10.7	0.0	2.3	2	0	0	2	2	2	0	Adenovirus	hexon-associated	protein	(IX)
TetR_C_6	PF13977.6	gi|336253287|ref|YP_004596394.1|	-	0.025	14.8	0.3	0.06	13.6	0.3	1.6	1	1	0	1	1	1	0	BetI-type	transcriptional	repressor,	C-terminal
Radical_SAM	PF04055.21	gi|336253288|ref|YP_004596395.1|	-	4.7e-24	85.7	0.4	8.6e-24	84.8	0.2	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
UPF0004	PF00919.20	gi|336253288|ref|YP_004596395.1|	-	7.9e-19	67.5	0.1	2e-18	66.3	0.1	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.20	gi|336253288|ref|YP_004596395.1|	-	0.11	12.5	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	TRAM	domain
Peptidase_M48	PF01435.18	gi|336253289|ref|YP_004596396.1|	-	1.1e-27	97.0	0.0	1.6e-27	96.5	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|336253289|ref|YP_004596396.1|	-	0.00084	18.6	3.9	0.0026	17.0	0.0	2.6	3	0	0	3	3	3	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|336253289|ref|YP_004596396.1|	-	0.0036	17.2	0.0	0.0062	16.4	0.0	1.4	1	0	0	1	1	1	1	SprT-like	family
DUF2268	PF10026.9	gi|336253289|ref|YP_004596396.1|	-	0.043	13.4	0.0	0.068	12.7	0.0	1.2	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF4129	PF13559.6	gi|336253290|ref|YP_004596397.1|	-	1e-06	28.9	9.3	1e-06	28.9	9.3	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DUF4198	PF10670.9	gi|336253290|ref|YP_004596397.1|	-	0.00027	21.4	1.1	0.11	12.9	0.0	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4198)
CarboxypepD_reg	PF13620.6	gi|336253290|ref|YP_004596397.1|	-	0.0034	17.6	6.7	0.018	15.3	0.8	3.7	5	0	0	5	5	5	2	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.16	gi|336253290|ref|YP_004596397.1|	-	0.093	12.8	12.6	0.66	10.0	0.2	4.0	4	0	0	4	4	4	0	Bacterial	Ig-like	domain	(group	1)
CarbopepD_reg_2	PF13715.6	gi|336253290|ref|YP_004596397.1|	-	0.12	12.3	0.6	10	6.2	0.1	2.5	2	0	0	2	2	2	0	CarboxypepD_reg-like	domain
AglB_L1	PF18079.1	gi|336253290|ref|YP_004596397.1|	-	2.3	8.6	6.4	1.9	8.8	1.6	2.8	2	1	1	3	3	3	0	Archaeal	glycosylation	protein	B	long	peripheral	domain
Phage_holin_3_6	PF07332.11	gi|336253291|ref|YP_004596398.1|	-	2.6	8.1	7.1	5.4	7.1	7.1	1.5	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF58	PF01882.18	gi|336253292|ref|YP_004596399.1|	-	3.8e-15	55.9	1.0	8.5e-15	54.8	1.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|336253292|ref|YP_004596399.1|	-	9e-09	35.5	2.6	2.3e-08	34.2	1.9	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|336253292|ref|YP_004596399.1|	-	1.4e-06	28.4	0.9	1.4e-06	28.4	0.9	2.6	3	0	0	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Acetyltransf_6	PF13480.7	gi|336253292|ref|YP_004596399.1|	-	0.023	14.8	0.4	0.023	14.8	0.4	2.7	3	1	0	3	3	3	0	Acetyltransferase	(GNAT)	domain
ACD	PF16671.5	gi|336253292|ref|YP_004596399.1|	-	0.063	11.6	0.0	0.089	11.1	0.0	1.1	1	0	0	1	1	1	0	Actin	cross-linking	domain
TRAP_beta	PF05753.14	gi|336253292|ref|YP_004596399.1|	-	0.14	11.5	0.1	0.23	10.9	0.1	1.2	1	0	0	1	1	1	0	Translocon-associated	protein	beta	(TRAPB)
Glyco_transf_4	PF13439.6	gi|336253292|ref|YP_004596399.1|	-	2.6	8.0	5.6	4.2	7.4	0.1	3.3	4	0	0	4	4	4	0	Glycosyltransferase	Family	4
AAA_3	PF07726.11	gi|336253294|ref|YP_004596401.1|	-	3.4e-65	217.8	0.1	5.1e-65	217.2	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|336253294|ref|YP_004596401.1|	-	1.3e-16	60.2	2.9	3e-16	59.0	2.9	1.6	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|336253294|ref|YP_004596401.1|	-	1.8e-15	57.2	0.0	3.5e-15	56.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|336253294|ref|YP_004596401.1|	-	6.2e-06	26.7	0.0	2e-05	25.1	0.0	1.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|336253294|ref|YP_004596401.1|	-	6.1e-05	22.8	0.0	0.001	18.8	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|336253294|ref|YP_004596401.1|	-	0.027	13.6	0.0	0.036	13.2	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|336253294|ref|YP_004596401.1|	-	0.073	12.8	0.0	2.7	7.7	0.0	2.3	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|336253294|ref|YP_004596401.1|	-	0.11	11.8	0.1	3.5	7.0	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
ATPase	PF06745.13	gi|336253294|ref|YP_004596401.1|	-	0.13	11.5	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	KaiC
Radical_SAM	PF04055.21	gi|336253295|ref|YP_004596402.1|	-	1e-10	42.3	0.1	1.8e-10	41.5	0.1	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
CofC	PF01983.16	gi|336253297|ref|YP_004596404.1|	-	1.2e-40	139.0	0.0	1.5e-40	138.7	0.0	1.1	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|336253297|ref|YP_004596404.1|	-	0.024	15.0	5.6	0.038	14.4	5.4	1.4	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
Tubulin	PF00091.25	gi|336253298|ref|YP_004596405.1|	-	9.6e-28	97.7	0.0	1.8e-27	96.9	0.0	1.5	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|336253298|ref|YP_004596405.1|	-	0.036	13.3	0.1	0.055	12.6	0.1	1.4	1	0	0	1	1	1	0	Tubulin	like
Endotoxin_C2	PF18449.1	gi|336253298|ref|YP_004596405.1|	-	0.13	12.6	1.1	0.28	11.6	0.0	2.0	2	0	0	2	2	2	0	Delta	endotoxin
NAD_binding_10	PF13460.6	gi|336253299|ref|YP_004596406.1|	-	7.6e-28	97.6	0.0	1.6e-27	96.6	0.0	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|336253299|ref|YP_004596406.1|	-	4.4e-19	68.9	0.0	9.2e-18	64.6	0.0	2.2	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|336253299|ref|YP_004596406.1|	-	5.2e-12	45.5	0.0	1.9e-07	30.5	0.0	2.3	2	1	0	2	2	2	2	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336253299|ref|YP_004596406.1|	-	1.2e-10	40.9	0.0	2.5e-09	36.6	0.0	2.1	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.13	gi|336253299|ref|YP_004596406.1|	-	1.5e-09	37.8	0.0	2.1e-09	37.3	0.0	1.4	1	0	0	1	1	1	1	NmrA-like	family
GDP_Man_Dehyd	PF16363.5	gi|336253299|ref|YP_004596406.1|	-	1.3e-08	34.6	0.0	2.4e-08	33.8	0.0	1.4	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_4	PF07993.12	gi|336253299|ref|YP_004596406.1|	-	0.0012	18.1	0.0	0.57	9.3	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|336253299|ref|YP_004596406.1|	-	0.0019	17.4	0.1	0.031	13.4	0.1	2.3	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|336253299|ref|YP_004596406.1|	-	0.0082	15.6	0.0	0.012	15.1	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
Glyco_trans_4_4	PF13579.6	gi|336253299|ref|YP_004596406.1|	-	0.01	16.3	0.7	0.051	14.0	0.1	2.3	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|336253299|ref|YP_004596406.1|	-	0.011	15.8	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
NAD_binding_2	PF03446.15	gi|336253299|ref|YP_004596406.1|	-	0.013	15.7	0.0	0.026	14.7	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|336253299|ref|YP_004596406.1|	-	0.021	15.4	0.0	0.081	13.5	0.0	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
KR	PF08659.10	gi|336253299|ref|YP_004596406.1|	-	0.022	14.7	0.0	0.045	13.7	0.0	1.5	1	0	0	1	1	1	0	KR	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336253299|ref|YP_004596406.1|	-	0.047	13.3	0.0	0.091	12.3	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|336253299|ref|YP_004596406.1|	-	0.077	13.6	0.0	0.36	11.4	0.0	2.1	3	0	0	3	3	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thymidylate_kin	PF02223.17	gi|336253300|ref|YP_004596407.1|	-	3.4e-36	124.6	0.0	6.4e-36	123.8	0.0	1.4	1	1	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|336253300|ref|YP_004596407.1|	-	2.4e-06	27.6	0.0	9.8e-06	25.6	0.0	1.8	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_33	PF13671.6	gi|336253300|ref|YP_004596407.1|	-	3e-06	27.5	0.0	1.4e-05	25.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|336253300|ref|YP_004596407.1|	-	7.2e-06	26.6	0.0	4e-05	24.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|336253300|ref|YP_004596407.1|	-	0.0029	17.9	0.2	0.0037	17.5	0.2	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|336253300|ref|YP_004596407.1|	-	0.012	16.1	0.0	1.7	9.1	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
DUF3179	PF11376.8	gi|336253300|ref|YP_004596407.1|	-	0.032	13.6	0.1	0.037	13.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3179)
AAA_16	PF13191.6	gi|336253300|ref|YP_004596407.1|	-	0.038	14.4	0.0	0.064	13.6	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|336253300|ref|YP_004596407.1|	-	0.054	13.5	0.0	0.087	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|336253300|ref|YP_004596407.1|	-	0.14	12.4	0.0	0.48	10.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AsnC_trans_reg	PF01037.21	gi|336253301|ref|YP_004596408.1|	-	6.1e-12	45.3	0.1	6.8e-12	45.2	0.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|336253301|ref|YP_004596408.1|	-	0.064	13.3	1.3	0.11	12.6	1.3	1.3	1	1	0	1	1	1	0	NapD	protein
TrkA_N	PF02254.18	gi|336253302|ref|YP_004596409.1|	-	8.4e-27	93.7	0.3	1.3e-26	93.1	0.3	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|336253302|ref|YP_004596409.1|	-	1.5e-13	50.4	0.4	3.4e-13	49.2	0.4	1.6	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336253302|ref|YP_004596409.1|	-	7.5e-07	28.9	0.0	1.3e-06	28.1	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|336253302|ref|YP_004596409.1|	-	3.5e-06	27.0	0.1	6.7e-06	26.1	0.1	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_7	PF13241.6	gi|336253302|ref|YP_004596409.1|	-	3.8e-06	27.3	0.1	6.7e-06	26.5	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|336253302|ref|YP_004596409.1|	-	6.6e-06	25.8	0.0	1.1e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.19	gi|336253302|ref|YP_004596409.1|	-	7.4e-06	25.4	0.0	8.8e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|336253302|ref|YP_004596409.1|	-	2.4e-05	24.8	0.1	4.7e-05	23.9	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336253302|ref|YP_004596409.1|	-	4.6e-05	23.2	0.0	7e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336253302|ref|YP_004596409.1|	-	0.00022	20.5	0.0	0.00033	20.0	0.0	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253302|ref|YP_004596409.1|	-	0.00022	21.4	0.0	0.00043	20.5	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|336253302|ref|YP_004596409.1|	-	0.00046	20.1	0.0	0.00067	19.6	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|336253302|ref|YP_004596409.1|	-	0.0005	19.6	0.1	0.001	18.6	0.1	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FAD_binding_2	PF00890.24	gi|336253302|ref|YP_004596409.1|	-	0.0016	17.6	0.0	0.025	13.7	0.0	2.0	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_2	PF03446.15	gi|336253302|ref|YP_004596409.1|	-	0.0019	18.4	0.0	0.022	14.9	0.0	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|336253302|ref|YP_004596409.1|	-	0.0025	18.1	0.1	0.0043	17.3	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336253302|ref|YP_004596409.1|	-	0.0039	16.6	0.0	0.021	14.2	0.0	1.9	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336253302|ref|YP_004596409.1|	-	0.0044	16.6	0.0	0.0084	15.7	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|336253302|ref|YP_004596409.1|	-	0.0058	17.2	0.0	0.046	14.3	0.0	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.6	gi|336253302|ref|YP_004596409.1|	-	0.017	15.6	0.0	0.033	14.7	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
AlaDh_PNT_C	PF01262.21	gi|336253302|ref|YP_004596409.1|	-	0.022	14.0	0.1	0.032	13.5	0.1	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
HI0933_like	PF03486.14	gi|336253302|ref|YP_004596409.1|	-	0.024	13.4	0.0	0.033	12.9	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
Shikimate_DH	PF01488.20	gi|336253302|ref|YP_004596409.1|	-	0.072	13.2	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Glyco_transf_4	PF13439.6	gi|336253302|ref|YP_004596409.1|	-	0.086	12.8	0.4	0.15	12.0	0.2	1.5	2	0	0	2	2	1	0	Glycosyltransferase	Family	4
NAD_Gly3P_dh_N	PF01210.23	gi|336253302|ref|YP_004596409.1|	-	0.089	12.8	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Glyco_trans_4_4	PF13579.6	gi|336253302|ref|YP_004596409.1|	-	0.1	13.1	0.4	0.23	11.9	0.4	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Pyr_redox_3	PF13738.6	gi|336253302|ref|YP_004596409.1|	-	0.11	11.8	0.0	0.16	11.2	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Castor_Poll_mid	PF06241.12	gi|336253302|ref|YP_004596409.1|	-	0.17	11.9	0.0	0.33	10.9	0.0	1.4	1	0	0	1	1	1	0	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
AsnC_trans_reg	PF01037.21	gi|336253303|ref|YP_004596410.1|	-	1.5e-09	37.7	0.1	1.7e-09	37.5	0.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
Cys_Met_Meta_PP	PF01053.20	gi|336253307|ref|YP_004596414.1|	-	1.3e-137	458.4	0.0	1.5e-137	458.2	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|336253307|ref|YP_004596414.1|	-	5.8e-08	32.3	0.0	8.1e-08	31.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|336253307|ref|YP_004596414.1|	-	1.6e-05	24.4	0.7	4.4e-05	22.9	0.4	1.7	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SepSecS	PF05889.13	gi|336253307|ref|YP_004596414.1|	-	0.01	14.5	0.0	0.016	13.9	0.0	1.2	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Aminotran_5	PF00266.19	gi|336253307|ref|YP_004596414.1|	-	0.014	14.4	0.0	0.027	13.4	0.0	1.5	1	0	0	1	1	1	0	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|336253307|ref|YP_004596414.1|	-	0.037	13.3	0.0	0.064	12.5	0.0	1.4	1	0	0	1	1	1	0	Beta-eliminating	lyase
DUF4115	PF13464.6	gi|336253308|ref|YP_004596415.1|	-	0.21	11.8	1.4	0.76	10.0	0.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4115)
DUF839	PF05787.13	gi|336253309|ref|YP_004596416.1|	-	4.8e-22	78.8	2.9	9.6e-20	71.2	1.4	3.6	2	1	1	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF839)
Dockerin_1	PF00404.18	gi|336253309|ref|YP_004596416.1|	-	0.00012	22.2	1.5	0.00012	22.2	1.5	2.1	2	0	0	2	2	2	1	Dockerin	type	I	domain
EF-hand_7	PF13499.6	gi|336253309|ref|YP_004596416.1|	-	0.14	12.7	6.8	0.37	11.3	2.7	3.3	2	1	0	2	2	2	0	EF-hand	domain	pair
EF-hand_1	PF00036.32	gi|336253309|ref|YP_004596416.1|	-	0.15	11.7	9.3	1.3	8.8	0.1	4.2	3	1	1	4	4	4	0	EF	hand
EF-hand_6	PF13405.6	gi|336253309|ref|YP_004596416.1|	-	0.31	11.1	5.0	2.4	8.3	0.1	3.7	3	0	0	3	3	3	0	EF-hand	domain
iPGM_N	PF06415.13	gi|336253311|ref|YP_004596418.1|	-	4.1e-79	265.0	0.7	5.7e-79	264.5	0.7	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.18	gi|336253311|ref|YP_004596418.1|	-	1.3e-72	244.1	0.2	1.5e-72	243.9	0.2	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|336253311|ref|YP_004596418.1|	-	9.7e-09	35.3	0.2	1e-07	31.9	0.2	2.3	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|336253311|ref|YP_004596418.1|	-	3.5e-05	23.4	0.4	0.00016	21.2	0.1	2.3	2	1	0	2	2	2	1	Sulfatase
PglZ	PF08665.12	gi|336253311|ref|YP_004596418.1|	-	0.00059	20.0	0.1	0.0016	18.6	0.1	1.7	1	0	0	1	1	1	1	PglZ	domain
PGM_PMM_II	PF02879.16	gi|336253311|ref|YP_004596418.1|	-	0.22	12.2	1.4	10	6.8	0.2	3.0	2	1	1	3	3	3	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
VKG_Carbox	PF05090.14	gi|336253312|ref|YP_004596419.1|	-	1.6e-15	56.9	0.0	2.4e-15	56.3	0.0	1.4	1	1	0	1	1	1	1	Vitamin	K-dependent	gamma-carboxylase
DEC1	PF15859.5	gi|336253312|ref|YP_004596419.1|	-	0.01	15.8	0.1	0.029	14.4	0.1	1.7	1	0	0	1	1	1	0	Deleted	in	esophageal	cancer	1	family
DUF2613	PF11021.8	gi|336253312|ref|YP_004596419.1|	-	0.11	12.6	0.1	0.54	10.4	0.1	2.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2613)
DUF393	PF04134.12	gi|336253313|ref|YP_004596420.1|	-	9.4e-34	117.1	0.0	1.1e-33	116.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
NurA	PF09376.10	gi|336253314|ref|YP_004596421.1|	-	1.8e-17	63.9	0.0	2.3e-17	63.5	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
5_nucleotid_C	PF02872.18	gi|336253315|ref|YP_004596422.1|	-	4.3e-26	92.0	0.0	8.3e-26	91.1	0.0	1.4	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
UCR_Fe-S_N	PF10399.9	gi|336253315|ref|YP_004596422.1|	-	0.18	11.2	2.5	0.42	10.0	2.5	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Cohesin	PF00963.18	gi|336253316|ref|YP_004596423.1|	-	1.2e-05	25.5	0.0	3.4e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Cohesin	domain
Cohesin	PF00963.18	gi|336253319|ref|YP_004596426.1|	-	1.4e-05	25.4	0.3	5.4e-05	23.5	0.3	1.9	1	1	0	1	1	1	1	Cohesin	domain
DUF87	PF01935.17	gi|336253320|ref|YP_004596427.1|	-	1.9e-08	34.7	0.0	3.5e-08	33.8	0.0	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|336253320|ref|YP_004596427.1|	-	3e-07	29.4	0.3	0.00066	18.4	0.1	2.6	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
HAS-barrel	PF09378.10	gi|336253320|ref|YP_004596427.1|	-	8.8e-05	22.6	0.0	0.00035	20.7	0.0	2.0	1	0	0	1	1	1	1	HAS	barrel	domain
AAA_10	PF12846.7	gi|336253320|ref|YP_004596427.1|	-	0.0011	18.0	0.0	0.088	11.7	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
TrwB_AAD_bind	PF10412.9	gi|336253320|ref|YP_004596427.1|	-	0.0082	15.1	0.0	0.014	14.3	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T2SSE	PF00437.20	gi|336253320|ref|YP_004596427.1|	-	0.023	13.8	0.0	0.042	12.9	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_22	PF13401.6	gi|336253320|ref|YP_004596427.1|	-	0.029	14.6	0.0	0.18	12.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|336253320|ref|YP_004596427.1|	-	0.041	14.3	0.2	1.2	9.5	0.1	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|336253320|ref|YP_004596427.1|	-	0.064	12.6	0.0	0.16	11.3	0.0	1.6	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
ResIII	PF04851.15	gi|336253320|ref|YP_004596427.1|	-	0.067	13.2	0.0	9.7	6.2	0.0	2.2	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|336253320|ref|YP_004596427.1|	-	0.099	13.0	0.0	0.39	11.1	0.0	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
FRG	PF08867.11	gi|336253322|ref|YP_004596429.1|	-	3.6e-22	79.1	0.0	5.8e-22	78.5	0.0	1.3	1	0	0	1	1	1	1	FRG	domain
adh_short_C2	PF13561.6	gi|336253323|ref|YP_004596430.1|	-	1.3e-71	240.9	1.6	1.4e-71	240.7	1.6	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336253323|ref|YP_004596430.1|	-	1.7e-55	187.5	2.3	2e-55	187.3	2.3	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336253323|ref|YP_004596430.1|	-	4.9e-11	42.9	0.5	6.9e-11	42.4	0.5	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336253323|ref|YP_004596430.1|	-	1.9e-08	34.1	0.4	2.4e-08	33.8	0.4	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Cadherin_4	PF17803.1	gi|336253323|ref|YP_004596430.1|	-	0.16	12.6	1.9	0.42	11.3	1.9	1.8	1	1	0	1	1	1	0	Bacterial	cadherin-like	domain
3HCDH_N	PF02737.18	gi|336253323|ref|YP_004596430.1|	-	0.61	9.9	4.0	1.2	9.0	4.1	1.5	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
SpoIIAA-like	PF11964.8	gi|336253324|ref|YP_004596431.1|	-	2.4e-08	34.9	0.0	2.9e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	SpoIIAA-like
DLH	PF01738.18	gi|336253325|ref|YP_004596432.1|	-	5.1e-08	32.7	0.0	6.1e-08	32.5	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.18	gi|336253325|ref|YP_004596432.1|	-	5.1e-05	23.0	0.1	5.7e-05	22.8	0.1	1.2	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
BAAT_C	PF08840.11	gi|336253325|ref|YP_004596432.1|	-	0.0011	19.0	0.0	0.0025	17.8	0.0	1.6	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Thioesterase	PF00975.20	gi|336253325|ref|YP_004596432.1|	-	0.01	15.9	0.2	0.78	9.8	0.3	2.1	1	1	1	2	2	2	0	Thioesterase	domain
Abhydrolase_6	PF12697.7	gi|336253325|ref|YP_004596432.1|	-	0.014	16.0	7.0	0.045	14.3	6.8	1.9	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
FSH1	PF03959.13	gi|336253325|ref|YP_004596432.1|	-	0.018	14.7	0.0	0.051	13.2	0.0	1.7	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
Abhydrolase_1	PF00561.20	gi|336253326|ref|YP_004596433.1|	-	8.7e-23	81.3	0.0	6.6e-19	68.5	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|336253326|ref|YP_004596433.1|	-	9.1e-22	78.7	10.7	1.1e-21	78.4	10.7	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|336253326|ref|YP_004596433.1|	-	4.5e-19	68.7	0.0	7.6e-19	67.9	0.0	1.3	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|336253326|ref|YP_004596433.1|	-	5.4e-06	26.5	0.0	2.9e-05	24.1	0.0	2.0	2	0	0	2	2	2	1	TAP-like	protein
Peptidase_S9	PF00326.21	gi|336253326|ref|YP_004596433.1|	-	0.0024	17.4	0.2	0.014	14.9	0.0	2.2	2	2	0	2	2	2	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|336253326|ref|YP_004596433.1|	-	0.0041	16.8	0.3	0.011	15.3	0.3	1.6	1	1	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
NTS_2	PF15448.6	gi|336253326|ref|YP_004596433.1|	-	0.023	15.1	0.7	0.099	13.1	0.4	2.2	2	0	0	2	2	2	0	N-terminal	segments	of	P.	falciparum	erythrocyte	membrane	protein
Thioesterase	PF00975.20	gi|336253326|ref|YP_004596433.1|	-	0.039	14.1	0.6	0.32	11.1	0.6	2.0	1	1	0	1	1	1	0	Thioesterase	domain
Abhydrolase_5	PF12695.7	gi|336253326|ref|YP_004596433.1|	-	0.17	11.6	0.0	1.3	8.8	0.0	2.1	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
PspA_IM30	PF04012.12	gi|336253327|ref|YP_004596434.1|	-	7e-35	120.6	32.2	7e-35	120.6	32.2	2.1	2	0	0	2	2	2	1	PspA/IM30	family
Spc7	PF08317.11	gi|336253327|ref|YP_004596434.1|	-	0.004	16.1	26.1	0.004	16.1	26.1	2.9	1	1	2	3	3	3	1	Spc7	kinetochore	protein
YabA	PF06156.13	gi|336253327|ref|YP_004596434.1|	-	0.012	16.2	27.2	0.22	12.2	7.1	3.6	1	1	2	3	3	3	0	Initiation	control	protein	YabA
DHR10	PF18595.1	gi|336253327|ref|YP_004596434.1|	-	0.016	15.3	17.5	0.016	15.3	17.5	3.6	2	2	1	3	3	3	0	Designed	helical	repeat	protein	10	domain
DUF1664	PF07889.12	gi|336253327|ref|YP_004596434.1|	-	0.016	15.2	7.4	0.016	15.2	7.4	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF3535	PF12054.8	gi|336253327|ref|YP_004596434.1|	-	0.037	13.3	10.7	0.077	12.2	10.7	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
Prominin	PF05478.11	gi|336253327|ref|YP_004596434.1|	-	0.12	10.3	13.5	0.16	9.9	13.5	1.1	1	0	0	1	1	1	0	Prominin
BLOC1_2	PF10046.9	gi|336253327|ref|YP_004596434.1|	-	0.25	11.7	24.2	0.79	10.1	0.4	3.8	2	1	2	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Baculo_PEP_C	PF04513.12	gi|336253327|ref|YP_004596434.1|	-	0.53	10.3	11.3	3.4	7.7	7.3	3.1	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF3584	PF12128.8	gi|336253327|ref|YP_004596434.1|	-	0.63	7.5	48.0	0.17	9.4	32.9	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
FOXP-CC	PF16159.5	gi|336253327|ref|YP_004596434.1|	-	0.98	10.1	10.5	0.99	10.1	0.2	2.8	2	0	0	2	2	2	0	FOXP	coiled-coil	domain
Dor1	PF04124.12	gi|336253327|ref|YP_004596434.1|	-	1.9	7.1	19.6	8.9	4.9	16.7	2.3	1	1	1	2	2	2	0	Dor1-like	family
AAA_13	PF13166.6	gi|336253327|ref|YP_004596434.1|	-	2.6	6.6	33.5	0.28	9.8	26.5	2.0	1	1	1	2	2	2	0	AAA	domain
SHE3	PF17078.5	gi|336253327|ref|YP_004596434.1|	-	3.1	7.5	29.6	20	4.8	28.9	2.6	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
COG6	PF06419.11	gi|336253327|ref|YP_004596434.1|	-	3.4	5.8	22.0	0.035	12.3	1.2	2.8	1	1	1	3	3	3	0	Conserved	oligomeric	complex	COG6
FTA4	PF13093.6	gi|336253327|ref|YP_004596434.1|	-	3.6	7.4	26.0	42	3.9	0.5	3.2	1	1	1	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
Endotoxin_N	PF03945.14	gi|336253327|ref|YP_004596434.1|	-	3.8	7.2	5.1	2.4	7.8	2.9	1.7	1	1	1	2	2	2	0	delta	endotoxin,	N-terminal	domain
Sec5	PF15469.6	gi|336253327|ref|YP_004596434.1|	-	4.2	7.1	16.2	17	5.2	16.2	2.0	1	1	0	1	1	1	0	Exocyst	complex	component	Sec5
DUF948	PF06103.11	gi|336253327|ref|YP_004596434.1|	-	5.5	7.3	14.1	2	8.8	2.6	3.8	1	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
CENP-F_leu_zip	PF10473.9	gi|336253327|ref|YP_004596434.1|	-	6.9	6.7	42.3	4.7	7.2	18.0	3.7	1	1	3	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF5082	PF16888.5	gi|336253327|ref|YP_004596434.1|	-	7.4	6.9	27.6	2.3	8.5	12.3	3.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5082)
DUF3426	PF11906.8	gi|336253328|ref|YP_004596435.1|	-	0.0073	16.5	0.0	0.017	15.3	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3426)
UCR_Fe-S_N	PF10399.9	gi|336253328|ref|YP_004596435.1|	-	0.043	13.2	2.6	0.076	12.4	2.6	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
OppC_N	PF12911.7	gi|336253329|ref|YP_004596436.1|	-	0.43	10.6	3.2	1.7	8.7	1.1	2.6	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
YtxH	PF12732.7	gi|336253332|ref|YP_004596439.1|	-	0.0021	18.6	0.1	0.02	15.4	0.0	2.4	1	1	1	2	2	2	1	YtxH-like	protein
DUF2207	PF09972.9	gi|336253332|ref|YP_004596439.1|	-	0.0069	15.2	0.8	1.3	7.7	0.0	2.1	2	0	0	2	2	2	2	Predicted	membrane	protein	(DUF2207)
Aldedh	PF00171.22	gi|336253332|ref|YP_004596439.1|	-	0.077	11.5	0.1	0.5	8.8	0.0	2.0	2	0	0	2	2	2	0	Aldehyde	dehydrogenase	family
DUF327	PF03885.13	gi|336253332|ref|YP_004596439.1|	-	0.12	12.4	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF327)
MRAP	PF15183.6	gi|336253332|ref|YP_004596439.1|	-	2.5	8.1	6.5	3.4	7.7	0.3	2.5	2	0	0	2	2	2	0	Melanocortin-2	receptor	accessory	protein	family
RskA	PF10099.9	gi|336253333|ref|YP_004596440.1|	-	9.8	6.4	7.5	2.3	8.5	0.8	2.4	2	1	0	2	2	2	0	Anti-sigma-K	factor	rskA
Hemerythrin	PF01814.23	gi|336253334|ref|YP_004596441.1|	-	4.4e-21	75.9	16.2	4.4e-21	75.9	16.2	2.0	1	1	1	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
ScdA_N	PF04405.14	gi|336253334|ref|YP_004596441.1|	-	1.7e-18	66.0	0.1	3.5e-18	65.0	0.1	1.6	1	0	0	1	1	1	1	Domain	of	Unknown	function	(DUF542)
Cep57_MT_bd	PF06657.13	gi|336253334|ref|YP_004596441.1|	-	0.11	13.0	2.1	0.19	12.2	0.3	2.2	2	0	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
FapA	PF03961.13	gi|336253334|ref|YP_004596441.1|	-	0.26	9.9	0.1	0.36	9.4	0.1	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
CCDC-167	PF15188.6	gi|336253334|ref|YP_004596441.1|	-	0.8	10.1	4.7	0.71	10.2	1.9	2.3	2	2	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
APG6_N	PF17675.1	gi|336253334|ref|YP_004596441.1|	-	0.82	10.2	5.5	3.4	8.2	2.8	2.4	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Cupin_2	PF07883.11	gi|336253335|ref|YP_004596442.1|	-	1e-11	44.4	0.1	1.3e-11	44.1	0.1	1.1	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|336253335|ref|YP_004596442.1|	-	0.00097	18.8	0.1	0.0028	17.3	0.1	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Ppnp	PF06865.11	gi|336253335|ref|YP_004596442.1|	-	0.01	16.2	0.0	0.015	15.7	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine/purine	nucleoside	phosphorylase
Pirin_C	PF05726.13	gi|336253335|ref|YP_004596442.1|	-	0.063	13.6	0.0	0.08	13.3	0.0	1.1	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
cNMP_binding	PF00027.29	gi|336253335|ref|YP_004596442.1|	-	0.089	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Cyclic	nucleotide-binding	domain
zf-CDGSH	PF09360.10	gi|336253337|ref|YP_004596444.1|	-	1.9e-11	44.0	0.9	3e-11	43.3	0.2	1.7	2	0	0	2	2	2	1	Iron-binding	zinc	finger	CDGSH	type
E1-E2_ATPase	PF00122.20	gi|336253338|ref|YP_004596445.1|	-	1.4e-45	155.1	1.4	2.7e-45	154.1	1.4	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336253338|ref|YP_004596445.1|	-	6.6e-31	108.2	7.1	1.7e-30	106.9	7.1	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336253338|ref|YP_004596445.1|	-	9.7e-08	32.3	0.0	3.2e-07	30.7	0.0	2.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|336253338|ref|YP_004596445.1|	-	3.2e-05	23.8	1.3	7.5e-05	22.6	1.3	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|336253338|ref|YP_004596445.1|	-	0.067	13.9	0.4	0.067	13.9	0.4	1.7	2	0	0	2	2	2	0	Putative	metal-binding	domain	of	cation	transport	ATPase
SPC25	PF06703.11	gi|336253340|ref|YP_004596447.1|	-	0.047	13.5	0.1	0.052	13.3	0.1	1.1	1	0	0	1	1	1	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Orf78	PF06024.12	gi|336253340|ref|YP_004596447.1|	-	0.18	12.1	0.0	0.21	11.9	0.0	1.2	1	0	0	1	1	1	0	Orf78	(ac78)
COX2	PF00116.20	gi|336253341|ref|YP_004596448.1|	-	1.1e-10	41.4	0.0	1.8e-10	40.7	0.0	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|336253341|ref|YP_004596448.1|	-	3.3e-09	36.8	0.2	1.4e-08	34.8	0.0	2.0	2	1	1	3	3	3	1	Cupredoxin-like	domain
Big_3_5	PF16640.5	gi|336253341|ref|YP_004596448.1|	-	0.002	18.3	1.1	0.023	14.9	0.4	2.3	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	3)
COX2-transmemb	PF09125.10	gi|336253341|ref|YP_004596448.1|	-	0.096	12.5	0.6	0.16	11.8	0.6	1.3	1	0	0	1	1	1	0	Cytochrome	C	oxidase	subunit	II,	transmembrane
COX1	PF00115.20	gi|336253342|ref|YP_004596449.1|	-	2.4e-89	300.2	68.6	9e-89	298.3	63.6	2.0	1	1	1	2	2	2	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF883	PF05957.13	gi|336253344|ref|YP_004596451.1|	-	0.0014	19.2	2.1	0.002	18.7	2.1	1.4	1	1	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF883)
LRS4	PF10422.9	gi|336253345|ref|YP_004596452.1|	-	0.014	15.0	0.4	0.019	14.5	0.4	1.1	1	0	0	1	1	1	0	Monopolin	complex	subunit	LRS4
Nup54_57_C	PF18570.1	gi|336253345|ref|YP_004596452.1|	-	0.1	12.2	0.9	0.2	11.3	0.9	1.5	1	0	0	1	1	1	0	NUP57/Nup54	C-terminal	domain
HalOD1	PF18545.1	gi|336253347|ref|YP_004596454.1|	-	1.3e-25	89.5	0.1	1.5e-25	89.3	0.1	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
E1-E2_ATPase	PF00122.20	gi|336253348|ref|YP_004596455.1|	-	2.6e-42	144.4	0.3	2.6e-42	144.4	0.3	2.7	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336253348|ref|YP_004596455.1|	-	7.4e-28	98.3	4.3	1e-27	97.8	2.8	2.1	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336253348|ref|YP_004596455.1|	-	4e-07	30.4	0.0	4.7e-05	23.8	0.0	3.3	3	0	0	3	3	3	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|336253348|ref|YP_004596455.1|	-	6.5e-05	22.8	0.2	0.00012	21.9	0.2	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|336253348|ref|YP_004596455.1|	-	0.077	13.7	0.2	0.16	12.7	0.2	1.5	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
RseC_MucC	PF04246.12	gi|336253348|ref|YP_004596455.1|	-	0.087	12.8	2.5	0.45	10.5	2.5	2.2	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
COX3	PF00510.18	gi|336253349|ref|YP_004596456.1|	-	3e-31	109.2	16.5	4.4e-31	108.7	16.5	1.3	1	1	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
ThrE	PF06738.12	gi|336253350|ref|YP_004596457.1|	-	0.67	9.3	13.1	0.93	8.8	13.1	1.1	1	0	0	1	1	1	0	Putative	threonine/serine	exporter
DUF2976	PF11190.8	gi|336253350|ref|YP_004596457.1|	-	1.2	9.0	11.5	0.085	12.7	2.7	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2976)
ABC2_membrane_3	PF12698.7	gi|336253351|ref|YP_004596458.1|	-	2.4	7.2	8.0	2.9	6.9	8.0	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF2207	PF09972.9	gi|336253352|ref|YP_004596459.1|	-	0.012	14.5	0.1	0.012	14.5	0.1	1.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
MNHE	PF01899.16	gi|336253352|ref|YP_004596459.1|	-	0.096	12.4	0.2	0.096	12.4	0.2	2.2	2	0	0	2	2	2	0	Na+/H+	ion	antiporter	subunit
COX1	PF00115.20	gi|336253353|ref|YP_004596460.1|	-	8.4e-140	466.4	56.8	1.3e-139	465.8	56.8	1.3	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX2	PF00116.20	gi|336253355|ref|YP_004596462.1|	-	1.1e-15	57.5	0.3	1.3e-14	54.1	0.0	2.3	2	1	1	3	3	3	2	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.15	gi|336253355|ref|YP_004596462.1|	-	6.9e-11	42.1	0.2	1.1e-10	41.5	0.2	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
CwsA	PF10814.8	gi|336253355|ref|YP_004596462.1|	-	0.0081	16.3	0.8	0.013	15.6	0.5	1.5	1	1	0	1	1	1	1	Cell	wall	synthesis	protein	CwsA
DUF3413	PF11893.8	gi|336253355|ref|YP_004596462.1|	-	0.012	14.8	0.1	0.02	14.1	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3413)
AA_permease_2	PF13520.6	gi|336253355|ref|YP_004596462.1|	-	0.064	12.1	0.7	0.13	11.0	0.7	1.5	1	1	0	1	1	1	0	Amino	acid	permease
Cupredoxin_1	PF13473.6	gi|336253355|ref|YP_004596462.1|	-	0.1	12.7	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	Cupredoxin-like	domain
TrbC	PF04956.13	gi|336253355|ref|YP_004596462.1|	-	0.26	11.5	5.7	0.65	10.2	5.1	1.8	1	1	1	2	2	2	0	TrbC/VIRB2	family
CitMHS	PF03600.16	gi|336253355|ref|YP_004596462.1|	-	0.96	8.6	7.7	6.9	5.8	8.6	1.6	1	1	1	2	2	2	0	Citrate	transporter
RseC_MucC	PF04246.12	gi|336253356|ref|YP_004596463.1|	-	0.13	12.2	0.7	0.14	12.1	0.7	1.1	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Phage_holin_2_2	PF10746.9	gi|336253357|ref|YP_004596464.1|	-	0.091	12.4	0.3	0.094	12.4	0.3	1.2	1	0	0	1	1	1	0	Phage	holin	T7	family,	holin	superfamily	II
Form_Nir_trans	PF01226.17	gi|336253358|ref|YP_004596465.1|	-	7.6e-43	146.5	20.1	8.9e-43	146.3	20.1	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
OsmC	PF02566.19	gi|336253359|ref|YP_004596466.1|	-	3.3e-23	82.0	0.1	2.1e-22	79.5	0.0	1.8	2	0	0	2	2	2	1	OsmC-like	protein
Pyr_redox_2	PF07992.14	gi|336253360|ref|YP_004596467.1|	-	8.5e-50	169.6	0.3	1.3e-49	169.1	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|336253360|ref|YP_004596467.1|	-	5.6e-23	81.3	0.2	9.5e-23	80.6	0.2	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|336253360|ref|YP_004596467.1|	-	3.6e-19	69.1	0.3	1e-14	54.8	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|336253360|ref|YP_004596467.1|	-	0.00013	21.3	0.0	0.00072	18.8	0.0	2.1	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Gcw_chp	PF09694.10	gi|336253360|ref|YP_004596467.1|	-	0.0074	16.3	0.1	0.018	15.0	0.1	1.6	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(Gcw_chp)
FAD_binding_2	PF00890.24	gi|336253360|ref|YP_004596467.1|	-	0.013	14.6	4.8	0.014	14.5	0.9	2.4	2	1	0	2	2	2	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|336253360|ref|YP_004596467.1|	-	0.035	14.0	0.2	2.7	7.8	0.0	2.7	3	0	0	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Bac_transf	PF02397.16	gi|336253360|ref|YP_004596467.1|	-	0.16	11.6	0.0	0.25	10.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	sugar	transferase
DrsE	PF02635.15	gi|336253361|ref|YP_004596468.1|	-	4.9e-07	30.1	0.1	5.6e-07	29.9	0.1	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Molybdop_Fe4S4	PF04879.16	gi|336253361|ref|YP_004596468.1|	-	0.049	13.6	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
Glyco_hydro_15	PF00723.21	gi|336253362|ref|YP_004596469.1|	-	2.1e-49	168.5	0.0	1.2e-44	152.9	0.0	2.0	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
PepSY_2	PF13670.6	gi|336253362|ref|YP_004596469.1|	-	0.075	13.0	0.1	0.21	11.6	0.1	1.7	1	0	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
TPR_4	PF07721.14	gi|336253362|ref|YP_004596469.1|	-	0.64	10.8	8.0	0.31	11.8	0.2	3.7	3	0	0	3	3	3	0	Tetratricopeptide	repeat
Abhydrolase_1	PF00561.20	gi|336253363|ref|YP_004596470.1|	-	1.6e-25	90.2	0.2	1.4e-20	74.0	0.1	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|336253363|ref|YP_004596470.1|	-	1e-19	72.0	1.2	1.3e-19	71.7	1.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|336253363|ref|YP_004596470.1|	-	5.3e-12	45.5	0.1	5.6e-11	42.2	0.1	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|336253363|ref|YP_004596470.1|	-	9.7e-05	21.2	0.0	0.00015	20.6	0.0	1.2	1	0	0	1	1	1	1	Ndr	family
Abhydrolase_4	PF08386.10	gi|336253363|ref|YP_004596470.1|	-	0.11	12.6	0.0	0.26	11.4	0.0	1.6	1	0	0	1	1	1	0	TAP-like	protein
HTH_24	PF13412.6	gi|336253364|ref|YP_004596471.1|	-	1.8e-07	30.6	0.0	2.8e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336253364|ref|YP_004596471.1|	-	4.8e-07	29.6	0.3	7e-07	29.1	0.3	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336253364|ref|YP_004596471.1|	-	1.3e-06	28.2	0.0	1.6e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336253364|ref|YP_004596471.1|	-	3.6e-05	23.7	0.2	6.7e-05	22.9	0.1	1.5	2	0	0	2	2	1	1	Helix-turn-helix	domain
PaaX	PF07848.12	gi|336253364|ref|YP_004596471.1|	-	4.1e-05	23.7	0.1	5.2e-05	23.4	0.1	1.2	1	0	0	1	1	1	1	PaaX-like	protein
TFIIE_alpha	PF02002.17	gi|336253364|ref|YP_004596471.1|	-	4.3e-05	23.3	0.0	5.1e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
GntR	PF00392.21	gi|336253364|ref|YP_004596471.1|	-	0.0001	21.9	0.2	0.00013	21.5	0.2	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|336253364|ref|YP_004596471.1|	-	0.00012	22.4	0.0	0.00015	22.2	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|336253364|ref|YP_004596471.1|	-	0.00026	20.9	0.0	0.0003	20.7	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
PadR	PF03551.14	gi|336253364|ref|YP_004596471.1|	-	0.00044	20.1	0.0	0.00096	19.1	0.0	1.5	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|336253364|ref|YP_004596471.1|	-	0.00045	20.5	0.0	0.00066	20.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
Replic_Relax	PF13814.6	gi|336253364|ref|YP_004596471.1|	-	0.00065	19.8	0.0	0.0007	19.7	0.0	1.0	1	0	0	1	1	1	1	Replication-relaxation
HTH_28	PF13518.6	gi|336253364|ref|YP_004596471.1|	-	0.00089	19.3	0.0	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336253364|ref|YP_004596471.1|	-	0.0018	18.1	0.0	0.0025	17.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|336253364|ref|YP_004596471.1|	-	0.0019	18.0	0.2	0.0029	17.4	0.2	1.4	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336253364|ref|YP_004596471.1|	-	0.0028	17.5	0.0	0.0041	17.0	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|336253364|ref|YP_004596471.1|	-	0.0035	17.1	0.0	0.005	16.6	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_AsnC-type	PF13404.6	gi|336253364|ref|YP_004596471.1|	-	0.0037	17.1	0.3	0.0095	15.7	0.1	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|336253364|ref|YP_004596471.1|	-	0.0038	16.7	0.0	0.0066	15.9	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_43	PF09904.9	gi|336253364|ref|YP_004596471.1|	-	0.005	16.8	0.0	0.0057	16.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
Sigma70_r4_2	PF08281.12	gi|336253364|ref|YP_004596471.1|	-	0.0055	16.3	0.0	0.007	16.0	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_CodY	PF08222.11	gi|336253364|ref|YP_004596471.1|	-	0.0099	15.4	0.0	0.013	15.0	0.0	1.1	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_29	PF13551.6	gi|336253364|ref|YP_004596471.1|	-	0.01	15.8	0.0	0.013	15.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Mga	PF08280.11	gi|336253364|ref|YP_004596471.1|	-	0.013	15.5	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HxlR	PF01638.17	gi|336253364|ref|YP_004596471.1|	-	0.015	15.1	0.0	0.017	14.9	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
MarR	PF01047.22	gi|336253364|ref|YP_004596471.1|	-	0.022	14.7	0.0	0.026	14.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_47	PF16221.5	gi|336253364|ref|YP_004596471.1|	-	0.028	14.0	0.0	0.037	13.6	0.0	1.2	1	0	0	1	1	1	0	winged	helix-turn-helix
HTH_9	PF08221.11	gi|336253364|ref|YP_004596471.1|	-	0.034	14.2	0.0	0.057	13.5	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|336253364|ref|YP_004596471.1|	-	0.045	13.7	0.0	0.057	13.4	0.0	1.1	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
HTH_54	PF18607.1	gi|336253364|ref|YP_004596471.1|	-	0.067	13.3	0.0	0.077	13.1	0.0	1.1	1	0	0	1	1	1	0	ParA	helix	turn	helix	domain
DUF2250	PF10007.9	gi|336253364|ref|YP_004596471.1|	-	0.076	13.1	0.0	0.16	12.1	0.0	1.6	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_36	PF13730.6	gi|336253364|ref|YP_004596471.1|	-	0.084	12.8	0.0	0.3	11.1	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336253364|ref|YP_004596471.1|	-	0.14	12.3	0.0	0.32	11.2	0.0	1.6	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF505	PF04458.12	gi|336253364|ref|YP_004596471.1|	-	0.2	10.0	0.0	0.2	10.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF1028	PF06267.12	gi|336253365|ref|YP_004596472.1|	-	2.6e-67	226.4	0.2	3e-67	226.1	0.2	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
SepF	PF04472.12	gi|336253366|ref|YP_004596473.1|	-	3.3e-16	59.3	2.3	3.3e-16	59.3	2.3	1.6	2	0	0	2	2	2	1	Cell	division	protein	SepF
Lar_N	PF09861.9	gi|336253366|ref|YP_004596473.1|	-	0.034	13.3	0.3	0.041	13.0	0.3	1.2	1	0	0	1	1	1	0	Lactate	racemase	N-terminal	domain
Rx_N	PF18052.1	gi|336253366|ref|YP_004596473.1|	-	0.07	13.4	1.4	0.15	12.3	1.2	1.7	1	1	0	1	1	1	0	Rx	N-terminal	domain
DUF2826	PF11442.8	gi|336253367|ref|YP_004596474.1|	-	0.12	12.2	1.7	0.14	12.0	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2826)
MdcE	PF06833.11	gi|336253367|ref|YP_004596474.1|	-	0.19	11.2	2.1	0.36	10.3	2.1	1.4	1	0	0	1	1	1	0	Malonate	decarboxylase	gamma	subunit	(MdcE)
Sugar_tr	PF00083.24	gi|336253367|ref|YP_004596474.1|	-	1.2	7.9	4.9	0.49	9.2	1.6	1.9	2	0	0	2	2	2	0	Sugar	(and	other)	transporter
NIR_SIR	PF01077.22	gi|336253368|ref|YP_004596475.1|	-	6.7e-43	145.9	0.0	4.3e-36	123.8	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
Rhodanese	PF00581.20	gi|336253368|ref|YP_004596475.1|	-	1.6e-36	125.1	0.0	7.8e-17	61.7	0.0	2.5	2	0	0	2	2	2	2	Rhodanese-like	domain
NIR_SIR_ferr	PF03460.17	gi|336253368|ref|YP_004596475.1|	-	3.1e-32	110.2	4.7	1e-14	54.1	0.3	4.4	4	1	0	4	4	4	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DGC	PF08859.11	gi|336253368|ref|YP_004596475.1|	-	0.21	11.7	0.6	2.7	8.1	0.0	2.5	2	1	0	2	2	2	0	DGC	domain
FrhB_FdhB_C	PF04432.13	gi|336253369|ref|YP_004596476.1|	-	3.1e-30	105.0	0.0	3.1e-30	105.0	0.0	1.9	2	1	0	2	2	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|336253369|ref|YP_004596476.1|	-	2.5e-20	72.4	0.2	5.2e-20	71.4	0.2	1.5	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4_21	PF14697.6	gi|336253369|ref|YP_004596476.1|	-	9.4e-10	38.5	8.6	9.4e-10	38.5	8.6	1.6	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336253369|ref|YP_004596476.1|	-	1.8e-07	31.2	14.2	3.1e-07	30.4	12.5	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336253369|ref|YP_004596476.1|	-	3.8e-07	30.2	9.6	3.8e-07	30.2	9.6	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|336253369|ref|YP_004596476.1|	-	3.9e-07	30.9	7.1	0.023	15.6	2.1	3.4	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|336253369|ref|YP_004596476.1|	-	7.4e-07	29.6	2.4	0.0054	17.2	0.3	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336253369|ref|YP_004596476.1|	-	9.5e-07	29.3	22.5	4.5e-05	24.0	11.9	2.7	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336253369|ref|YP_004596476.1|	-	2.5e-06	27.0	18.2	0.00011	21.8	3.9	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336253369|ref|YP_004596476.1|	-	1.6e-05	25.0	17.6	0.00084	19.7	4.4	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336253369|ref|YP_004596476.1|	-	0.00055	20.1	2.0	0.0013	18.9	2.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336253369|ref|YP_004596476.1|	-	0.00059	19.8	4.7	0.00059	19.8	4.7	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|336253369|ref|YP_004596476.1|	-	0.0008	19.4	3.8	0.0008	19.4	3.8	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|336253369|ref|YP_004596476.1|	-	0.0023	18.4	12.2	0.58	10.7	5.8	3.1	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_20	PF14691.6	gi|336253369|ref|YP_004596476.1|	-	0.0043	16.8	0.6	0.0043	16.8	0.6	1.8	2	0	0	2	2	1	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_15	PF13459.6	gi|336253369|ref|YP_004596476.1|	-	0.011	16.5	9.4	0.28	12.0	0.9	3.7	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|336253369|ref|YP_004596476.1|	-	0.025	15.0	14.2	0.49	10.9	4.0	2.7	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|336253369|ref|YP_004596476.1|	-	3.4	8.8	20.9	0.22	12.6	4.4	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|336253369|ref|YP_004596476.1|	-	7.6	7.5	17.6	0.77	10.6	2.7	2.7	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
HTH_10	PF04967.12	gi|336253370|ref|YP_004596477.1|	-	7.8e-21	73.6	0.1	1.4e-20	72.8	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_5	PF01022.20	gi|336253370|ref|YP_004596477.1|	-	0.0076	16.1	0.0	0.33	10.9	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.19	gi|336253370|ref|YP_004596477.1|	-	0.0083	15.7	0.1	0.072	12.6	0.1	2.1	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|336253370|ref|YP_004596477.1|	-	0.024	14.1	0.3	0.13	11.8	0.0	2.4	3	0	0	3	3	3	0	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|336253370|ref|YP_004596477.1|	-	0.025	14.4	0.0	2.5	8.0	0.0	2.5	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_40	PF14493.6	gi|336253370|ref|YP_004596477.1|	-	0.034	14.6	0.1	0.24	11.9	0.0	2.2	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|336253370|ref|YP_004596477.1|	-	0.11	12.3	0.0	0.44	10.4	0.0	2.0	3	0	0	3	3	3	0	Homeodomain-like	domain
Citrate_synt	PF00285.21	gi|336253371|ref|YP_004596478.1|	-	7.8e-130	433.1	0.0	8.9e-130	432.9	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
DUF1974	PF09317.11	gi|336253371|ref|YP_004596478.1|	-	0.13	11.8	0.4	13	5.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1974)
Glyco_hydro_2	PF00703.21	gi|336253373|ref|YP_004596480.1|	-	0.021	15.5	0.8	1.6	9.5	0.1	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolases	family	2
NPCBM_assoc	PF10633.9	gi|336253373|ref|YP_004596480.1|	-	0.14	12.5	4.4	0.3	11.3	0.2	2.6	2	0	0	2	2	2	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Calycin_like	PF13944.6	gi|336253373|ref|YP_004596480.1|	-	0.44	10.9	2.9	9.3	6.6	0.1	2.3	2	0	0	2	2	2	0	Calycin-like	beta-barrel	domain
DUF4330	PF14221.6	gi|336253373|ref|YP_004596480.1|	-	1.1	9.5	5.0	1.8	8.8	1.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4330)
GGACT	PF06094.12	gi|336253374|ref|YP_004596481.1|	-	8.5e-17	61.9	0.0	1.1e-16	61.6	0.0	1.1	1	0	0	1	1	1	1	Gamma-glutamyl	cyclotransferase,	AIG2-like
AIG2_2	PF13772.6	gi|336253374|ref|YP_004596481.1|	-	3.1e-05	24.3	0.0	5e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	AIG2-like	family
PALP	PF00291.25	gi|336253375|ref|YP_004596482.1|	-	2.3e-84	283.3	7.3	2.8e-84	283.0	7.3	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|336253375|ref|YP_004596482.1|	-	0.0022	17.7	0.0	0.008	15.9	0.0	2.0	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.6	gi|336253375|ref|YP_004596482.1|	-	0.0054	17.3	0.0	0.038	14.6	0.0	2.3	2	0	0	2	2	2	1	ACT	domain
YhfZ_C	PF14503.6	gi|336253375|ref|YP_004596482.1|	-	0.064	12.8	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	YhfZ	C-terminal	domain
FtsA	PF14450.6	gi|336253375|ref|YP_004596482.1|	-	0.082	13.3	0.3	0.18	12.2	0.3	1.6	1	0	0	1	1	1	0	Cell	division	protein	FtsA
Pep_deformylase	PF01327.21	gi|336253375|ref|YP_004596482.1|	-	0.096	12.3	1.4	1.8	8.1	0.1	2.5	1	1	1	2	2	2	0	Polypeptide	deformylase
Ribonuc_L-PSP	PF01042.21	gi|336253376|ref|YP_004596483.1|	-	1.1e-38	132.0	0.0	1.2e-38	131.8	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.6	gi|336253376|ref|YP_004596483.1|	-	0.054	13.6	0.1	0.087	13.0	0.1	1.5	1	1	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
DUF5493	PF17597.2	gi|336253377|ref|YP_004596484.1|	-	0.073	13.3	2.0	0.12	12.6	2.0	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5493)
DUF2721	PF11026.8	gi|336253377|ref|YP_004596484.1|	-	0.17	11.8	3.8	0.24	11.3	3.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
DUF2749	PF10907.8	gi|336253377|ref|YP_004596484.1|	-	1.3	9.3	4.8	0.55	10.4	1.9	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2749)
adh_short_C2	PF13561.6	gi|336253378|ref|YP_004596485.1|	-	1.8e-45	155.3	0.0	2.8e-45	154.7	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336253378|ref|YP_004596485.1|	-	2.3e-36	125.1	0.0	2.9e-36	124.8	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336253378|ref|YP_004596485.1|	-	2.2e-10	40.7	0.1	3e-10	40.3	0.1	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|336253378|ref|YP_004596485.1|	-	0.0074	16.2	0.1	0.01	15.7	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
GDP_Man_Dehyd	PF16363.5	gi|336253378|ref|YP_004596485.1|	-	0.093	12.1	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
THF_DHG_CYH_C	PF02882.19	gi|336253378|ref|YP_004596485.1|	-	0.13	11.5	0.0	3.8	6.8	0.0	2.2	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
ApbA	PF02558.16	gi|336253378|ref|YP_004596485.1|	-	0.19	11.3	0.0	0.3	10.7	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
ThiF	PF00899.21	gi|336253379|ref|YP_004596486.1|	-	2.5e-67	226.8	0.0	3.3e-67	226.4	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|336253379|ref|YP_004596486.1|	-	0.0059	16.9	1.0	0.022	15.0	1.0	1.8	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Shikimate_DH	PF01488.20	gi|336253379|ref|YP_004596486.1|	-	0.035	14.2	0.1	0.24	11.5	0.0	2.0	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
PglD_N	PF17836.1	gi|336253379|ref|YP_004596486.1|	-	0.19	12.4	0.1	0.39	11.4	0.1	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
DZR	PF12773.7	gi|336253380|ref|YP_004596487.1|	-	0.0032	17.4	0.5	0.0032	17.4	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336253380|ref|YP_004596487.1|	-	0.013	14.9	5.8	0.026	13.9	5.5	1.7	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336253380|ref|YP_004596487.1|	-	0.019	15.7	0.4	0.021	15.6	0.4	1.1	1	0	0	1	1	1	0	zinc-ribbon	family
RecR	PF02132.15	gi|336253380|ref|YP_004596487.1|	-	0.027	14.0	0.8	0.04	13.5	0.8	1.2	1	0	0	1	1	1	0	RecR	protein
DUF1610	PF07754.11	gi|336253380|ref|YP_004596487.1|	-	0.14	12.2	3.3	3.7	7.6	0.5	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
OrfB_Zn_ribbon	PF07282.11	gi|336253380|ref|YP_004596487.1|	-	0.26	11.2	3.1	1.3	9.0	3.1	1.9	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|336253380|ref|YP_004596487.1|	-	0.4	10.8	5.7	2.4	8.3	5.7	2.0	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|336253380|ref|YP_004596487.1|	-	0.67	10.1	4.2	0.41	10.8	0.5	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|336253380|ref|YP_004596487.1|	-	3.8	7.4	5.9	7.5	6.5	1.2	2.2	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DZR	PF12773.7	gi|336253381|ref|YP_004596488.1|	-	0.0024	17.9	0.4	0.0032	17.4	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|336253381|ref|YP_004596488.1|	-	0.012	15.7	1.8	0.022	14.9	1.8	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253381|ref|YP_004596488.1|	-	0.013	14.9	0.7	3.1	7.3	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-HYPF	PF07503.12	gi|336253381|ref|YP_004596488.1|	-	0.051	13.4	1.9	0.67	9.8	0.1	2.2	2	0	0	2	2	2	0	HypF	finger
zinc_ribbon_2	PF13240.6	gi|336253381|ref|YP_004596488.1|	-	0.06	13.1	3.8	0.92	9.3	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DCR	PF14047.6	gi|336253381|ref|YP_004596488.1|	-	0.06	13.6	0.5	0.072	13.3	0.5	1.2	1	0	0	1	1	1	0	Dppa2/4	conserved	region
DUF4428	PF14471.6	gi|336253381|ref|YP_004596488.1|	-	0.099	12.6	0.1	0.21	11.5	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
A2L_zn_ribbon	PF08792.10	gi|336253381|ref|YP_004596488.1|	-	0.41	10.4	3.8	4.7	7.1	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
XPA_N	PF01286.18	gi|336253381|ref|YP_004596488.1|	-	0.62	10.2	4.5	4	7.6	0.0	2.1	2	0	0	2	2	2	0	XPA	protein	N-terminal
RecR	PF02132.15	gi|336253381|ref|YP_004596488.1|	-	1.6	8.4	6.0	4.7	6.9	6.0	1.7	1	1	0	1	1	1	0	RecR	protein
UvrD-helicase	PF00580.21	gi|336253382|ref|YP_004596489.1|	-	3.3e-25	89.3	0.2	2.2e-11	43.8	0.0	2.4	2	0	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|336253382|ref|YP_004596489.1|	-	2e-24	86.6	0.0	1.1e-23	84.2	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
UvrD_C	PF13361.6	gi|336253382|ref|YP_004596489.1|	-	5e-14	52.4	0.1	1.5e-08	34.4	0.0	2.3	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|336253382|ref|YP_004596489.1|	-	1.6e-09	37.8	0.3	2.5e-05	24.1	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
UvrD_C_2	PF13538.6	gi|336253382|ref|YP_004596489.1|	-	2.2e-09	37.0	0.3	0.0034	17.2	0.0	2.8	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.18	gi|336253382|ref|YP_004596489.1|	-	2.8e-05	24.0	0.2	4.2	7.0	0.0	4.2	4	1	0	4	4	4	2	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|336253382|ref|YP_004596489.1|	-	0.0011	18.8	0.0	0.0028	17.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Herpes_ori_bp	PF02399.15	gi|336253382|ref|YP_004596489.1|	-	0.0018	16.4	0.0	0.0028	15.8	0.0	1.2	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
DEAD	PF00270.29	gi|336253382|ref|YP_004596489.1|	-	0.0024	17.7	0.1	1.1	9.0	0.0	2.7	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|336253382|ref|YP_004596489.1|	-	0.0039	17.4	0.1	2.1	8.6	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
DUF2075	PF09848.9	gi|336253382|ref|YP_004596489.1|	-	0.015	14.5	0.0	1.5	8.0	0.0	3.0	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.6	gi|336253382|ref|YP_004596489.1|	-	0.12	12.0	1.0	0.41	10.2	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
AAA_17	PF13207.6	gi|336253382|ref|YP_004596489.1|	-	0.26	11.7	1.7	1.9	8.9	0.2	2.8	1	1	1	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|336253382|ref|YP_004596489.1|	-	1.2	9.5	4.2	1.3	9.4	0.6	2.9	3	2	0	3	3	3	0	AAA	ATPase	domain
Peptidase_M24	PF00557.24	gi|336253383|ref|YP_004596490.1|	-	0.0016	18.2	0.1	0.0037	17.0	0.0	1.7	2	0	0	2	2	2	1	Metallopeptidase	family	M24
DUF4131	PF13567.6	gi|336253384|ref|YP_004596491.1|	-	0.005	16.5	0.1	0.0061	16.2	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4131)
Melittin	PF01372.17	gi|336253384|ref|YP_004596491.1|	-	0.11	12.5	0.6	0.27	11.2	0.6	1.7	1	0	0	1	1	1	0	Melittin
Lum_binding	PF00677.17	gi|336253385|ref|YP_004596492.1|	-	4.3e-45	151.6	0.1	5.2e-22	77.6	0.0	2.0	2	0	0	2	2	2	2	Lumazine	binding	domain
DUF5072	PF16807.5	gi|336253385|ref|YP_004596492.1|	-	0.15	12.1	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5072)
ProQ_C	PF17516.2	gi|336253386|ref|YP_004596493.1|	-	0.19	11.2	0.2	0.42	10.1	0.2	1.5	1	0	0	1	1	1	0	ProQ	C-terminal	domain
PrsW-protease	PF13367.6	gi|336253387|ref|YP_004596494.1|	-	1.5e-43	148.6	16.9	1.5e-43	148.6	16.9	2.4	2	1	1	3	3	3	1	PrsW	family	intramembrane	metalloprotease
Cyd_oper_YbgE	PF09600.10	gi|336253387|ref|YP_004596494.1|	-	9.8	6.6	13.3	1.5	9.3	0.6	3.6	2	1	1	3	3	3	0	Cyd	operon	protein	YbgE	(Cyd_oper_YbgE)
DUF1906	PF08924.11	gi|336253388|ref|YP_004596495.1|	-	0.00065	19.9	0.1	0.00069	19.8	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1906)
DUF402	PF04167.13	gi|336253389|ref|YP_004596496.1|	-	6e-17	61.6	2.4	1.5e-16	60.3	2.4	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
Form_Nir_trans	PF01226.17	gi|336253390|ref|YP_004596497.1|	-	3.7e-42	144.3	14.9	4.2e-42	144.1	14.9	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
NUDIX	PF00293.28	gi|336253391|ref|YP_004596498.1|	-	4.5e-12	46.1	0.6	5.4e-12	45.9	0.6	1.1	1	0	0	1	1	1	1	NUDIX	domain
SBF	PF01758.16	gi|336253392|ref|YP_004596499.1|	-	6.5e-37	127.1	16.2	1.1e-36	126.3	16.2	1.4	1	0	0	1	1	1	1	Sodium	Bile	acid	symporter	family
SBF_like	PF13593.6	gi|336253392|ref|YP_004596499.1|	-	6.6e-13	48.7	20.6	8e-13	48.4	20.6	1.1	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
Mem_trans	PF03547.18	gi|336253392|ref|YP_004596499.1|	-	0.067	11.6	8.3	0.13	10.7	8.3	1.5	1	0	0	1	1	1	0	Membrane	transport	protein
DUF3925	PF13063.6	gi|336253392|ref|YP_004596499.1|	-	1.2	9.4	4.0	8.1	6.7	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3925)
DUF3325	PF11804.8	gi|336253394|ref|YP_004596501.1|	-	0.011	15.9	6.9	0.013	15.7	6.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
Polysacc_synt	PF01943.17	gi|336253394|ref|YP_004596501.1|	-	0.021	14.2	0.5	0.024	14.0	0.5	1.0	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Hexapep	PF00132.24	gi|336253395|ref|YP_004596502.1|	-	0.00033	20.3	5.5	1.1	9.1	0.2	3.6	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336253395|ref|YP_004596502.1|	-	0.47	10.2	8.3	2.1	8.2	0.2	3.0	3	2	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
zinc_ribbon_2	PF13240.6	gi|336253396|ref|YP_004596503.1|	-	0.013	15.2	3.6	0.033	13.9	3.6	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253396|ref|YP_004596503.1|	-	0.013	14.9	5.6	0.015	14.7	2.4	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|336253396|ref|YP_004596503.1|	-	0.019	15.0	0.2	0.024	14.7	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.13	gi|336253396|ref|YP_004596503.1|	-	0.037	13.7	0.1	0.074	12.7	0.1	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
CpXC	PF14353.6	gi|336253396|ref|YP_004596503.1|	-	0.069	13.2	0.2	0.087	12.9	0.2	1.2	1	0	0	1	1	1	0	CpXC	protein
HalOD1	PF18545.1	gi|336253397|ref|YP_004596504.1|	-	4.6e-27	94.1	0.1	6.2e-27	93.7	0.1	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
TraB	PF01963.17	gi|336253398|ref|YP_004596505.1|	-	0.035	14.0	0.0	9.8	6.0	0.0	2.1	2	0	0	2	2	2	0	TraB	family
HTH_Tnp_Mu_1	PF02316.16	gi|336253398|ref|YP_004596505.1|	-	0.17	12.1	0.0	0.28	11.4	0.0	1.4	1	0	0	1	1	1	0	Mu	DNA-binding	domain
eRF1_2	PF03464.15	gi|336253400|ref|YP_004596507.1|	-	4.9e-43	146.6	0.0	1e-42	145.6	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|336253400|ref|YP_004596507.1|	-	1.4e-29	102.9	0.3	5.3e-29	101.0	0.1	2.2	2	0	0	2	2	2	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|336253400|ref|YP_004596507.1|	-	9.3e-18	64.8	0.5	2.5e-17	63.4	0.1	1.9	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|336253400|ref|YP_004596507.1|	-	9.3e-16	58.3	0.2	1e-14	55.0	0.0	2.5	2	1	1	3	3	3	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|336253400|ref|YP_004596507.1|	-	1.8e-11	44.2	0.0	2.7e-11	43.6	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
TF_Zn_Ribbon	PF08271.12	gi|336253400|ref|YP_004596507.1|	-	0.00043	19.7	2.1	0.0014	18.1	2.1	2.0	1	0	0	1	1	1	1	TFIIB	zinc-binding
eIF-5_eIF-2B	PF01873.17	gi|336253400|ref|YP_004596507.1|	-	0.021	14.7	0.3	0.081	12.8	0.1	2.0	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
OrfB_Zn_ribbon	PF07282.11	gi|336253400|ref|YP_004596507.1|	-	0.047	13.6	1.5	0.11	12.5	1.5	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|336253400|ref|YP_004596507.1|	-	0.065	13.4	3.5	0.063	13.4	1.4	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-IS66	PF13005.7	gi|336253400|ref|YP_004596507.1|	-	0.2	12.1	4.5	4	7.9	0.2	3.0	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Lar_restr_allev	PF14354.6	gi|336253400|ref|YP_004596507.1|	-	0.21	12.0	0.8	0.45	10.9	0.8	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_2	PF13240.6	gi|336253400|ref|YP_004596507.1|	-	0.58	10.0	3.0	19	5.2	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|336253400|ref|YP_004596507.1|	-	0.62	10.2	3.6	17	5.6	0.1	2.7	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
YhfH	PF14149.6	gi|336253400|ref|YP_004596507.1|	-	0.86	9.6	4.8	2.6	8.1	0.1	2.9	3	0	0	3	3	3	0	YhfH-like	protein
CbiA	PF01656.23	gi|336253401|ref|YP_004596508.1|	-	3.2e-22	78.9	0.1	4.8e-22	78.4	0.1	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|336253401|ref|YP_004596508.1|	-	3.3e-22	79.2	1.5	1.5e-11	44.3	1.0	2.8	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|336253401|ref|YP_004596508.1|	-	8.8e-21	74.6	0.0	1.4e-20	74.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|336253401|ref|YP_004596508.1|	-	9.7e-14	51.4	0.0	1.9e-13	50.5	0.0	1.4	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|336253401|ref|YP_004596508.1|	-	1.4e-12	47.7	0.1	5.4e-12	45.7	0.1	1.7	1	1	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|336253401|ref|YP_004596508.1|	-	5.2e-09	35.8	0.9	1.4e-08	34.4	0.1	2.0	2	1	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|336253401|ref|YP_004596508.1|	-	6.9e-07	28.7	0.8	1.9e-05	24.0	2.0	2.0	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|336253401|ref|YP_004596508.1|	-	3.4e-05	23.8	1.0	0.00082	19.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|336253401|ref|YP_004596508.1|	-	0.00017	20.7	2.9	0.00056	19.0	2.9	1.7	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
VirC1	PF07015.11	gi|336253401|ref|YP_004596508.1|	-	0.0007	19.0	0.4	0.0012	18.2	0.4	1.3	1	0	0	1	1	1	1	VirC1	protein
CLP1_P	PF16575.5	gi|336253401|ref|YP_004596508.1|	-	0.0025	17.7	0.1	0.0041	17.0	0.1	1.3	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_30	PF13604.6	gi|336253401|ref|YP_004596508.1|	-	0.011	15.5	0.3	0.019	14.7	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|336253401|ref|YP_004596508.1|	-	0.036	13.8	0.0	0.058	13.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
FTHFS	PF01268.19	gi|336253401|ref|YP_004596508.1|	-	0.081	11.1	1.3	0.12	10.5	1.3	1.1	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
SRP54	PF00448.22	gi|336253401|ref|YP_004596508.1|	-	0.25	11.0	1.5	0.49	10.0	1.5	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
BSP_II	PF05432.11	gi|336253402|ref|YP_004596509.1|	-	0.28	10.9	10.4	0.35	10.5	10.4	1.1	1	0	0	1	1	1	0	Bone	sialoprotein	II	(BSP-II)
Nop14	PF04147.12	gi|336253402|ref|YP_004596509.1|	-	3.9	5.6	8.5	4.3	5.4	8.5	1.0	1	0	0	1	1	1	0	Nop14-like	family
tRNA-synt_1d	PF00750.19	gi|336253403|ref|YP_004596510.1|	-	1.3e-37	129.6	0.5	1.8e-37	129.1	0.5	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|336253403|ref|YP_004596510.1|	-	9.8e-32	109.6	0.1	6.4e-31	107.0	0.0	2.3	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.16	gi|336253403|ref|YP_004596510.1|	-	1.2e-09	38.6	0.0	3.9e-09	37.0	0.0	1.9	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.18	gi|336253403|ref|YP_004596510.1|	-	0.0099	14.8	0.0	0.094	11.6	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|336253403|ref|YP_004596510.1|	-	0.1	11.3	0.0	1.4	7.6	0.0	2.6	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|336253403|ref|YP_004596510.1|	-	0.13	11.5	0.0	0.25	10.7	0.0	1.5	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(C)	catalytic	domain
PRK	PF00485.18	gi|336253404|ref|YP_004596511.1|	-	1.1e-48	165.6	0.1	1.4e-48	165.3	0.1	1.1	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
dNK	PF01712.19	gi|336253404|ref|YP_004596511.1|	-	2e-06	27.8	0.1	9e-06	25.7	0.1	1.8	1	1	0	1	1	1	1	Deoxynucleoside	kinase
CoaE	PF01121.20	gi|336253404|ref|YP_004596511.1|	-	0.00034	20.3	0.1	0.0094	15.6	0.0	2.1	2	0	0	2	2	2	1	Dephospho-CoA	kinase
Zeta_toxin	PF06414.12	gi|336253404|ref|YP_004596511.1|	-	0.00053	19.3	0.0	0.0011	18.3	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_18	PF13238.6	gi|336253404|ref|YP_004596511.1|	-	0.0007	20.2	0.1	0.0014	19.2	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
CPT	PF07931.12	gi|336253404|ref|YP_004596511.1|	-	0.0017	18.3	0.0	0.0044	16.9	0.0	2.0	2	1	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
AAA_28	PF13521.6	gi|336253404|ref|YP_004596511.1|	-	0.0039	17.4	0.0	0.0074	16.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|336253404|ref|YP_004596511.1|	-	0.0052	15.9	0.1	0.066	12.3	0.0	2.1	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_17	PF13207.6	gi|336253404|ref|YP_004596511.1|	-	0.0052	17.2	0.9	1.7	9.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|336253404|ref|YP_004596511.1|	-	0.018	15.2	0.0	0.031	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|336253404|ref|YP_004596511.1|	-	0.023	15.2	0.0	0.031	14.8	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
Cytidylate_kin	PF02224.18	gi|336253404|ref|YP_004596511.1|	-	0.026	14.3	2.2	0.81	9.4	0.1	2.1	2	0	0	2	2	2	0	Cytidylate	kinase
T3SS_needle_reg	PF09025.10	gi|336253404|ref|YP_004596511.1|	-	0.028	14.4	0.1	0.044	13.8	0.1	1.2	1	0	0	1	1	1	0	YopR,	type	III	needle-polymerisation	regulator
AAA_22	PF13401.6	gi|336253404|ref|YP_004596511.1|	-	0.052	13.8	0.1	0.082	13.2	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|336253404|ref|YP_004596511.1|	-	0.091	11.9	0.4	0.27	10.4	0.3	1.7	2	0	0	2	2	2	0	NB-ARC	domain
Ribosomal_60s	PF00428.19	gi|336253404|ref|YP_004596511.1|	-	0.099	13.2	2.0	0.2	12.3	2.0	1.4	1	0	0	1	1	1	0	60s	Acidic	ribosomal	protein
AAA	PF00004.29	gi|336253404|ref|YP_004596511.1|	-	0.14	12.6	0.0	0.29	11.6	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF348	PF03990.14	gi|336253404|ref|YP_004596511.1|	-	0.73	9.6	5.4	0.19	11.5	1.7	1.8	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
NUDIX	PF00293.28	gi|336253405|ref|YP_004596512.1|	-	2.2e-17	63.3	0.3	2.7e-17	63.1	0.3	1.1	1	0	0	1	1	1	1	NUDIX	domain
Nudix_N_2	PF14803.6	gi|336253405|ref|YP_004596512.1|	-	8.4e-05	22.4	1.3	0.00018	21.3	1.3	1.6	1	0	0	1	1	1	1	Nudix	N-terminal
zf-TFIIB	PF13453.6	gi|336253405|ref|YP_004596512.1|	-	0.00092	18.5	1.3	0.0019	17.5	1.3	1.5	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|336253405|ref|YP_004596512.1|	-	0.0049	16.9	0.8	0.0078	16.2	0.8	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336253405|ref|YP_004596512.1|	-	0.053	13.0	3.7	3.3	7.3	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
YhfH	PF14149.6	gi|336253405|ref|YP_004596512.1|	-	0.082	12.9	0.6	3.5	7.7	0.1	2.2	2	0	0	2	2	2	0	YhfH-like	protein
DUF35_N	PF12172.8	gi|336253405|ref|YP_004596512.1|	-	0.097	12.6	6.3	2.3	8.2	0.9	2.7	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|336253405|ref|YP_004596512.1|	-	0.11	12.1	2.3	0.33	10.5	2.3	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|336253405|ref|YP_004596512.1|	-	0.24	11.2	4.8	1.7	8.5	0.7	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336253405|ref|YP_004596512.1|	-	0.36	11.0	2.8	1.1	9.4	2.2	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336253405|ref|YP_004596512.1|	-	0.45	10.5	2.7	0.37	10.8	1.3	1.7	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|336253405|ref|YP_004596512.1|	-	6.6	6.9	7.5	3.4	7.8	0.8	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PALP	PF00291.25	gi|336253406|ref|YP_004596513.1|	-	8.7e-56	189.5	1.0	1e-55	189.3	1.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Capsid_VP7	PF17071.5	gi|336253406|ref|YP_004596513.1|	-	0.039	13.2	0.0	0.057	12.7	0.0	1.1	1	0	0	1	1	1	0	Outer	capsid	protein	VP7
ADK_lid	PF05191.14	gi|336253406|ref|YP_004596513.1|	-	0.21	11.6	0.9	0.45	10.5	0.9	1.5	1	0	0	1	1	1	0	Adenylate	kinase,	active	site	lid
AstE_AspA	PF04952.14	gi|336253407|ref|YP_004596514.1|	-	1.8e-57	194.7	0.0	2.1e-57	194.5	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
SpoIIM	PF01944.17	gi|336253408|ref|YP_004596515.1|	-	2.3e-29	102.4	9.4	2.3e-29	102.4	9.4	3.4	2	1	1	3	3	3	1	Stage	II	sporulation	protein	M
DUF4349	PF14257.6	gi|336253408|ref|YP_004596515.1|	-	0.89	9.0	0.0	0.89	9.0	0.0	4.4	4	1	1	5	5	5	0	Domain	of	unknown	function	(DUF4349)
Rhodanese	PF00581.20	gi|336253409|ref|YP_004596516.1|	-	3e-14	53.4	0.0	5.8e-14	52.5	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B	PF00753.27	gi|336253409|ref|YP_004596516.1|	-	2.7e-11	43.9	3.6	2.7e-11	43.9	3.6	1.9	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336253409|ref|YP_004596516.1|	-	0.043	13.3	0.6	0.14	11.7	0.5	1.9	1	1	1	2	2	2	0	Beta-lactamase	superfamily	domain
PTS_IIB	PF02302.17	gi|336253409|ref|YP_004596516.1|	-	0.08	13.7	0.0	0.38	11.5	0.0	2.2	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Aldedh	PF00171.22	gi|336253410|ref|YP_004596517.1|	-	8.9e-155	515.7	1.4	1e-154	515.5	1.4	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
DUF3456	PF11938.8	gi|336253410|ref|YP_004596517.1|	-	0.2	12.1	0.1	0.47	11.0	0.1	1.6	1	0	0	1	1	1	0	TLR4	regulator	and	MIR-interacting	MSAP
SnoaL_2	PF12680.7	gi|336253411|ref|YP_004596518.1|	-	8.3e-18	64.9	6.4	9.8e-18	64.7	6.4	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|336253411|ref|YP_004596518.1|	-	8.1e-09	35.9	1.0	1.1e-08	35.5	1.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
SnoaL	PF07366.12	gi|336253411|ref|YP_004596518.1|	-	3e-07	30.3	1.3	7.3e-07	29.0	1.3	1.6	1	1	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_4	PF13577.6	gi|336253411|ref|YP_004596518.1|	-	1.6e-05	25.1	0.8	1.8e-05	24.9	0.8	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_3	PF13474.6	gi|336253411|ref|YP_004596518.1|	-	0.0017	18.6	0.1	0.0025	18.1	0.1	1.3	1	0	0	1	1	1	1	SnoaL-like	domain
Lumazine_bd_2	PF12893.7	gi|336253411|ref|YP_004596518.1|	-	0.016	15.9	0.1	0.021	15.5	0.1	1.3	1	0	0	1	1	1	0	Putative	lumazine-binding
LEH	PF07858.12	gi|336253411|ref|YP_004596518.1|	-	0.021	14.9	0.9	0.039	14.1	0.9	1.4	1	1	0	1	1	1	0	Limonene-1,2-epoxide	hydrolase	catalytic	domain
NTF2	PF02136.20	gi|336253411|ref|YP_004596518.1|	-	0.022	15.3	0.0	0.024	15.2	0.0	1.3	1	0	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
DUF4829	PF16111.5	gi|336253411|ref|YP_004596518.1|	-	0.17	12.7	0.0	0.22	12.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4829)
Rieske	PF00355.26	gi|336253412|ref|YP_004596519.1|	-	1.1e-12	47.7	0.0	2.2e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|336253412|ref|YP_004596519.1|	-	1.9e-12	47.0	0.0	3.8e-12	46.0	0.0	1.5	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Ribo_biogen_C	PF04034.13	gi|336253413|ref|YP_004596520.1|	-	9.3e-43	145.0	0.0	1.1e-42	144.7	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|336253413|ref|YP_004596520.1|	-	2.8e-06	27.1	0.1	5.4e-06	26.1	0.1	1.4	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
Ribosomal_L40e	PF01020.17	gi|336253414|ref|YP_004596521.1|	-	6.3e-09	35.6	5.3	7.4e-09	35.4	5.3	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zinc_ribbon_2	PF13240.6	gi|336253414|ref|YP_004596521.1|	-	0.00034	20.2	1.7	0.00044	19.9	1.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336253414|ref|YP_004596521.1|	-	0.0015	18.5	1.2	0.0016	18.4	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-CHY	PF05495.12	gi|336253414|ref|YP_004596521.1|	-	0.0017	18.8	0.9	0.0018	18.7	0.9	1.1	1	0	0	1	1	1	1	CHY	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|336253414|ref|YP_004596521.1|	-	0.065	12.9	7.0	0.11	12.1	7.0	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Ribosomal_L37e	PF01907.19	gi|336253414|ref|YP_004596521.1|	-	0.096	12.9	4.9	0.13	12.4	4.9	1.3	1	1	0	1	1	1	0	Ribosomal	protein	L37e
HypA	PF01155.19	gi|336253414|ref|YP_004596521.1|	-	0.14	12.2	1.4	0.15	12.1	1.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|336253414|ref|YP_004596521.1|	-	0.33	10.7	3.0	1	9.2	0.4	2.0	1	1	1	2	2	2	0	Rubredoxin	metal	binding	domain
DHHC	PF01529.20	gi|336253414|ref|YP_004596521.1|	-	0.5	10.5	2.0	0.54	10.4	2.0	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Lactamase_B	PF00753.27	gi|336253415|ref|YP_004596522.1|	-	6.7e-10	39.3	10.6	1.2e-07	32.0	10.6	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336253415|ref|YP_004596522.1|	-	0.00019	21.0	4.8	0.0013	18.2	4.8	2.2	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
ACP	PF06857.11	gi|336253415|ref|YP_004596522.1|	-	0.073	13.3	0.1	26	5.2	0.0	2.9	2	1	1	3	3	3	0	Malonate	decarboxylase	delta	subunit	(MdcD)
DUF3168	PF11367.8	gi|336253415|ref|YP_004596522.1|	-	0.099	12.8	0.5	0.21	11.8	0.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3168)
DUF1967	PF09269.11	gi|336253415|ref|YP_004596522.1|	-	0.1	12.6	0.0	0.41	10.6	0.0	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1967)
Lactamase_B_3	PF13483.6	gi|336253415|ref|YP_004596522.1|	-	0.24	11.3	1.8	1.3	8.9	1.8	2.0	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DUF99	PF01949.16	gi|336253417|ref|YP_004596524.1|	-	2.6e-59	199.7	0.3	3e-59	199.5	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
UDG	PF03167.19	gi|336253418|ref|YP_004596525.1|	-	1.7e-36	125.5	0.0	2e-36	125.3	0.0	1.0	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
SnoaL_2	PF12680.7	gi|336253419|ref|YP_004596526.1|	-	2.7e-20	72.9	3.1	3.3e-20	72.6	3.1	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL	PF07366.12	gi|336253419|ref|YP_004596526.1|	-	9.3e-11	41.6	0.4	2.9e-10	40.0	0.4	1.6	1	1	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_4	PF13577.6	gi|336253419|ref|YP_004596526.1|	-	2.5e-08	34.1	0.2	3e-08	33.8	0.2	1.2	1	0	0	1	1	1	1	SnoaL-like	domain
NTF2	PF02136.20	gi|336253419|ref|YP_004596526.1|	-	2.8e-05	24.7	0.0	3.6e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
DUF4440	PF14534.6	gi|336253419|ref|YP_004596526.1|	-	0.0054	17.1	0.6	0.0069	16.8	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
SnoaL_3	PF13474.6	gi|336253419|ref|YP_004596526.1|	-	0.0069	16.6	0.0	0.0098	16.2	0.0	1.4	1	1	0	1	1	1	1	SnoaL-like	domain
LEH	PF07858.12	gi|336253419|ref|YP_004596526.1|	-	0.066	13.3	0.1	0.091	12.9	0.1	1.2	1	0	0	1	1	1	0	Limonene-1,2-epoxide	hydrolase	catalytic	domain
GATase	PF00117.28	gi|336253420|ref|YP_004596527.1|	-	1.5e-23	83.5	0.0	2e-23	83.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|336253420|ref|YP_004596527.1|	-	9.8e-08	31.8	0.0	1.6e-07	31.2	0.0	1.3	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|336253420|ref|YP_004596527.1|	-	1e-06	28.7	0.0	2.5e-06	27.5	0.0	1.6	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.13	gi|336253420|ref|YP_004596527.1|	-	0.00033	20.5	0.5	0.0055	16.5	0.5	2.4	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|336253420|ref|YP_004596527.1|	-	0.0014	18.4	0.0	0.0023	17.8	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_5	PF13507.6	gi|336253420|ref|YP_004596527.1|	-	0.036	13.2	0.0	0.13	11.4	0.0	2.0	2	1	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Cdc6_C	PF09079.11	gi|336253421|ref|YP_004596528.1|	-	6.1e-20	71.0	0.2	2.5e-19	69.0	0.0	2.1	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336253421|ref|YP_004596528.1|	-	1e-13	51.7	0.2	3.6e-13	50.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336253421|ref|YP_004596528.1|	-	1.5e-09	38.5	1.9	2.5e-09	37.7	0.0	2.2	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336253421|ref|YP_004596528.1|	-	2.6e-07	31.1	0.0	8.8e-07	29.4	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|336253421|ref|YP_004596528.1|	-	3.1e-05	23.3	0.0	5.4e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activ_2	PF14532.6	gi|336253421|ref|YP_004596528.1|	-	9.5e-05	22.5	0.2	0.0031	17.6	0.0	2.5	3	0	0	3	3	2	1	Sigma-54	interaction	domain
Sigma54_activat	PF00158.26	gi|336253421|ref|YP_004596528.1|	-	0.00015	21.5	0.0	0.00031	20.5	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|336253421|ref|YP_004596528.1|	-	0.00016	21.7	0.0	0.00051	20.0	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
TniB	PF05621.11	gi|336253421|ref|YP_004596528.1|	-	0.00022	20.7	0.0	0.00043	19.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
DEAD	PF00270.29	gi|336253421|ref|YP_004596528.1|	-	0.0023	17.7	1.5	0.093	12.5	1.5	2.3	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
ATPase_2	PF01637.18	gi|336253421|ref|YP_004596528.1|	-	0.0039	17.1	0.4	0.0086	16.0	0.1	1.7	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_10	PF12846.7	gi|336253421|ref|YP_004596528.1|	-	0.0043	16.0	0.5	0.026	13.4	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
ATPase	PF06745.13	gi|336253421|ref|YP_004596528.1|	-	0.0084	15.5	0.1	0.019	14.3	0.1	1.6	1	1	0	1	1	1	1	KaiC
DUF87	PF01935.17	gi|336253421|ref|YP_004596528.1|	-	0.013	15.6	1.4	0.42	10.7	0.1	2.3	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_25	PF13481.6	gi|336253421|ref|YP_004596528.1|	-	0.014	14.9	0.0	0.033	13.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_2	PF07724.14	gi|336253421|ref|YP_004596528.1|	-	0.02	15.0	0.1	0.041	14.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
IstB_IS21	PF01695.17	gi|336253421|ref|YP_004596528.1|	-	0.025	14.3	0.1	0.1	12.3	0.1	2.0	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
FtsK_SpoIIIE	PF01580.18	gi|336253421|ref|YP_004596528.1|	-	0.027	13.8	0.1	0.26	10.6	0.0	2.2	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_5	PF07728.14	gi|336253421|ref|YP_004596528.1|	-	0.034	14.1	0.8	0.37	10.8	0.8	2.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Zot	PF05707.12	gi|336253421|ref|YP_004596528.1|	-	0.069	12.8	0.0	0.18	11.4	0.0	1.6	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
AAA_assoc_2	PF16193.5	gi|336253421|ref|YP_004596528.1|	-	0.08	13.3	1.7	0.96	9.8	1.6	2.5	1	1	0	1	1	1	0	AAA	C-terminal	domain
RNA_helicase	PF00910.22	gi|336253421|ref|YP_004596528.1|	-	0.085	13.3	0.1	0.51	10.7	0.0	2.2	2	0	0	2	2	2	0	RNA	helicase
E2F_TDP	PF02319.20	gi|336253421|ref|YP_004596528.1|	-	0.092	12.8	0.1	0.34	11.0	0.1	2.0	1	1	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
PhoH	PF02562.16	gi|336253421|ref|YP_004596528.1|	-	0.11	11.9	0.1	11	5.5	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_7	PF12775.7	gi|336253421|ref|YP_004596528.1|	-	0.16	11.5	0.1	0.27	10.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
FixS	PF03597.15	gi|336253422|ref|YP_004596529.1|	-	0.013	15.2	1.3	0.013	15.2	1.3	3.5	4	0	0	4	4	4	0	Cytochrome	oxidase	maturation	protein	cbb3-type
SWIM	PF04434.17	gi|336253423|ref|YP_004596530.1|	-	0.012	15.3	4.4	0.18	11.5	4.4	2.1	1	1	0	1	1	1	0	SWIM	zinc	finger
TRM	PF02005.16	gi|336253424|ref|YP_004596531.1|	-	7.6e-91	305.1	0.0	8.5e-91	304.9	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
PrmA	PF06325.13	gi|336253424|ref|YP_004596531.1|	-	1.9e-05	24.2	0.1	2.9e-05	23.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|336253424|ref|YP_004596531.1|	-	3.6e-05	23.4	0.0	6.7e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|336253424|ref|YP_004596531.1|	-	0.00014	22.5	0.3	0.00036	21.2	0.3	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253424|ref|YP_004596531.1|	-	0.00027	20.8	0.0	0.00043	20.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336253424|ref|YP_004596531.1|	-	0.0041	16.8	0.0	0.0066	16.1	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Zn-ribbon_8	PF09723.10	gi|336253424|ref|YP_004596531.1|	-	0.006	16.7	1.7	0.019	15.1	1.7	1.8	1	0	0	1	1	1	1	Zinc	ribbon	domain
UPF0020	PF01170.18	gi|336253424|ref|YP_004596531.1|	-	0.022	14.5	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_12	PF08242.12	gi|336253424|ref|YP_004596531.1|	-	0.045	14.5	0.1	0.092	13.5	0.1	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336253424|ref|YP_004596531.1|	-	0.08	13.6	0.2	0.22	12.2	0.2	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.16	gi|336253424|ref|YP_004596531.1|	-	0.15	11.8	0.0	0.19	11.5	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Lar_restr_allev	PF14354.6	gi|336253424|ref|YP_004596531.1|	-	0.22	11.9	1.9	3.3	8.1	0.1	3.2	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.7	gi|336253425|ref|YP_004596532.1|	-	0.00084	19.3	0.4	0.67	10.0	0.0	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|336253425|ref|YP_004596532.1|	-	0.016	15.3	2.4	0.85	9.8	0.3	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
CxC4	PF18717.1	gi|336253425|ref|YP_004596532.1|	-	0.11	12.3	0.4	0.18	11.7	0.4	1.4	1	1	0	1	1	1	0	CxC4	like	cysteine	cluster	associated	with	KDZ	transposases
zf-TFIIB	PF13453.6	gi|336253425|ref|YP_004596532.1|	-	0.3	10.5	0.2	0.3	10.5	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-C2H2_3	PF13878.6	gi|336253425|ref|YP_004596532.1|	-	0.35	10.7	2.7	5.9	6.8	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Virul_fac_BrkB	PF03631.15	gi|336253426|ref|YP_004596533.1|	-	2.1e-39	135.7	27.5	2.1e-39	135.7	27.5	2.0	2	0	0	2	2	2	1	Virulence	factor	BrkB
MAD	PF05557.13	gi|336253426|ref|YP_004596533.1|	-	0.016	13.6	1.6	0.022	13.2	1.6	1.1	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
DUF4349	PF14257.6	gi|336253426|ref|YP_004596533.1|	-	0.045	13.2	0.0	0.045	13.2	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4349)
VIT1	PF01988.19	gi|336253426|ref|YP_004596533.1|	-	0.052	13.4	0.0	0.052	13.4	0.0	3.4	3	1	0	3	3	3	0	VIT	family
DUF1690	PF07956.11	gi|336253426|ref|YP_004596533.1|	-	0.25	11.8	1.8	0.39	11.1	1.8	1.2	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
Tmemb_cc2	PF10267.9	gi|336253426|ref|YP_004596533.1|	-	0.99	8.5	3.4	1.4	8.0	3.4	1.1	1	0	0	1	1	1	0	Predicted	transmembrane	and	coiled-coil	2	protein
Atg14	PF10186.9	gi|336253426|ref|YP_004596533.1|	-	1.9	7.5	5.0	2.7	7.0	5.0	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Gln-synt_C	PF00120.24	gi|336253427|ref|YP_004596534.1|	-	4.4e-139	463.3	0.1	5.7e-139	462.9	0.1	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|336253427|ref|YP_004596534.1|	-	3.3e-32	110.1	0.1	6.8e-32	109.1	0.1	1.6	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|336253427|ref|YP_004596534.1|	-	0.00051	19.8	0.1	0.0039	17.0	0.1	2.2	1	1	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
AsnC_trans_reg	PF01037.21	gi|336253428|ref|YP_004596535.1|	-	4.3e-13	49.0	0.0	7.9e-13	48.2	0.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|336253428|ref|YP_004596535.1|	-	1.7e-10	40.3	0.0	3.1e-10	39.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336253428|ref|YP_004596535.1|	-	1.5e-07	31.2	0.1	3.2e-07	30.1	0.1	1.5	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|336253428|ref|YP_004596535.1|	-	6.7e-07	29.0	0.2	1.1e-06	28.3	0.2	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336253428|ref|YP_004596535.1|	-	3.8e-06	26.8	0.0	9.4e-06	25.5	0.0	1.7	2	0	0	2	2	1	1	HTH	domain
HTH_20	PF12840.7	gi|336253428|ref|YP_004596535.1|	-	8.9e-06	25.7	0.1	1.8e-05	24.7	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|336253428|ref|YP_004596535.1|	-	6.2e-05	22.7	0.0	0.00024	20.8	0.0	1.8	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|336253428|ref|YP_004596535.1|	-	0.00066	19.7	0.0	0.0011	19.1	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336253428|ref|YP_004596535.1|	-	0.00072	19.4	0.0	0.0013	18.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|336253428|ref|YP_004596535.1|	-	0.00079	19.3	0.0	0.0013	18.6	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|336253428|ref|YP_004596535.1|	-	0.0017	18.0	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.12	gi|336253428|ref|YP_004596535.1|	-	0.0022	17.7	0.0	0.0044	16.8	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|336253428|ref|YP_004596535.1|	-	0.0088	16.2	0.0	0.018	15.3	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|336253428|ref|YP_004596535.1|	-	0.01	15.8	0.0	0.022	14.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.10	gi|336253428|ref|YP_004596535.1|	-	0.01	15.6	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336253428|ref|YP_004596535.1|	-	0.024	14.5	0.0	0.043	13.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_40	PF14493.6	gi|336253428|ref|YP_004596535.1|	-	0.025	15.0	0.0	0.062	13.8	0.0	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|336253428|ref|YP_004596535.1|	-	0.039	13.4	0.0	0.086	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Mga	PF05043.13	gi|336253428|ref|YP_004596535.1|	-	0.058	14.0	0.0	0.14	12.7	0.0	1.6	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
HTH_50	PF18024.1	gi|336253428|ref|YP_004596535.1|	-	0.087	12.5	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_47	PF16221.5	gi|336253428|ref|YP_004596535.1|	-	0.095	12.3	0.1	0.17	11.5	0.1	1.4	1	0	0	1	1	1	0	winged	helix-turn-helix
HTH_27	PF13463.6	gi|336253428|ref|YP_004596535.1|	-	0.099	13.1	0.0	0.23	12.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.6	gi|336253428|ref|YP_004596535.1|	-	0.1	12.7	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_36	PF13730.6	gi|336253428|ref|YP_004596535.1|	-	0.1	12.6	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|336253428|ref|YP_004596535.1|	-	0.11	12.9	0.0	0.24	11.8	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
DprA_WH	PF17782.1	gi|336253428|ref|YP_004596535.1|	-	0.12	12.5	0.2	0.25	11.5	0.2	1.5	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_23	PF13384.6	gi|336253428|ref|YP_004596535.1|	-	0.14	12.0	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
ABC_membrane	PF00664.23	gi|336253429|ref|YP_004596536.1|	-	7.4e-42	143.9	2.0	9.1e-42	143.6	2.0	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|336253429|ref|YP_004596536.1|	-	7.8e-36	123.6	0.0	1.5e-35	122.7	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|336253429|ref|YP_004596536.1|	-	0.00049	20.4	0.2	0.0046	17.2	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336253429|ref|YP_004596536.1|	-	0.00093	18.7	0.1	0.025	14.0	0.0	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.12	gi|336253429|ref|YP_004596536.1|	-	0.0028	16.9	0.0	0.0078	15.5	0.0	1.7	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.6	gi|336253429|ref|YP_004596536.1|	-	0.0035	17.7	0.6	0.0095	16.3	0.6	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|336253429|ref|YP_004596536.1|	-	0.0081	16.1	0.0	0.019	14.9	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_24	PF13479.6	gi|336253429|ref|YP_004596536.1|	-	0.0093	15.7	0.0	0.018	14.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|336253429|ref|YP_004596536.1|	-	0.01	15.6	3.5	0.014	15.1	1.3	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_21	PF13304.6	gi|336253429|ref|YP_004596536.1|	-	0.011	15.6	0.0	0.044	13.6	0.0	1.7	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_18	PF13238.6	gi|336253429|ref|YP_004596536.1|	-	0.011	16.3	0.0	0.12	12.9	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|336253429|ref|YP_004596536.1|	-	0.017	14.9	0.0	0.042	13.6	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|336253429|ref|YP_004596536.1|	-	0.053	13.9	0.0	0.65	10.4	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|336253429|ref|YP_004596536.1|	-	0.065	13.2	0.1	3	7.7	0.0	2.3	1	1	0	2	2	2	0	NTPase
AAA_33	PF13671.6	gi|336253429|ref|YP_004596536.1|	-	0.13	12.4	0.0	0.48	10.6	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|336253429|ref|YP_004596536.1|	-	0.15	12.6	0.0	0.3	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336253429|ref|YP_004596536.1|	-	0.15	12.2	0.0	0.74	9.9	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_28	PF13521.6	gi|336253429|ref|YP_004596536.1|	-	0.25	11.6	2.2	16	5.7	0.3	2.5	1	1	0	2	2	2	0	AAA	domain
DEAD	PF00270.29	gi|336253429|ref|YP_004596536.1|	-	0.27	11.0	0.6	3.5	7.4	0.6	2.1	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
Na_Ca_ex	PF01699.24	gi|336253430|ref|YP_004596537.1|	-	9.5e-23	80.8	40.1	1.6e-17	63.9	12.8	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Git3	PF11710.8	gi|336253430|ref|YP_004596537.1|	-	0.038	13.8	1.8	0.081	12.7	1.8	1.6	1	0	0	1	1	1	0	G	protein-coupled	glucose	receptor	regulating	Gpa2
DUF4064	PF13273.6	gi|336253431|ref|YP_004596538.1|	-	0.23	11.8	3.0	0.27	11.5	3.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
DUF308	PF03729.13	gi|336253431|ref|YP_004596538.1|	-	0.24	11.7	7.7	0.81	10.1	7.8	1.7	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
DUF3311	PF11755.8	gi|336253431|ref|YP_004596538.1|	-	0.96	9.4	7.4	1.2	9.1	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3311)
NikR_C	PF08753.11	gi|336253432|ref|YP_004596539.1|	-	2.5e-20	72.4	0.6	3.7e-20	71.9	0.2	1.4	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|336253432|ref|YP_004596539.1|	-	0.0026	17.6	0.1	0.0041	17.0	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
NikR_C	PF08753.11	gi|336253433|ref|YP_004596540.1|	-	1.9e-21	76.0	0.4	2.6e-21	75.6	0.4	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|336253433|ref|YP_004596540.1|	-	8.3e-07	28.7	0.1	1.5e-06	27.9	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|336253433|ref|YP_004596540.1|	-	0.0024	18.0	0.0	0.004	17.3	0.0	1.4	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
RHH_8	PF17723.1	gi|336253433|ref|YP_004596540.1|	-	0.13	12.5	0.0	0.26	11.5	0.0	1.6	1	1	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
cobW	PF02492.19	gi|336253434|ref|YP_004596541.1|	-	5.5e-49	166.1	0.0	7e-49	165.8	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.14	gi|336253434|ref|YP_004596541.1|	-	6.7e-25	86.8	0.1	1.6e-24	85.6	0.1	1.7	1	1	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
GTP_EFTU	PF00009.27	gi|336253434|ref|YP_004596541.1|	-	0.001	18.7	0.0	0.37	10.3	0.0	2.1	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|336253434|ref|YP_004596541.1|	-	0.0097	15.8	0.1	1.6	8.6	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
T2SSE	PF00437.20	gi|336253434|ref|YP_004596541.1|	-	0.015	14.4	0.1	0.024	13.7	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Zeta_toxin	PF06414.12	gi|336253434|ref|YP_004596541.1|	-	0.016	14.5	0.0	0.026	13.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
TrwB_AAD_bind	PF10412.9	gi|336253434|ref|YP_004596541.1|	-	0.017	14.1	0.0	0.025	13.5	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_16	PF13191.6	gi|336253434|ref|YP_004596541.1|	-	0.044	14.2	0.0	0.092	13.1	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_28	PF13521.6	gi|336253434|ref|YP_004596541.1|	-	0.067	13.4	0.0	0.21	11.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|336253434|ref|YP_004596541.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|336253434|ref|YP_004596541.1|	-	0.14	12.1	0.0	0.27	11.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ZnuA	PF01297.17	gi|336253435|ref|YP_004596542.1|	-	1.3e-53	182.1	0.0	1.5e-53	181.8	0.0	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
ABC_tran	PF00005.27	gi|336253437|ref|YP_004596544.1|	-	4.4e-32	111.5	0.0	5.9e-32	111.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336253437|ref|YP_004596544.1|	-	9.3e-11	42.1	0.0	3.5e-06	27.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|336253437|ref|YP_004596544.1|	-	0.00016	22.2	0.0	0.00025	21.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336253437|ref|YP_004596544.1|	-	0.00024	20.6	0.0	0.021	14.3	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|336253437|ref|YP_004596544.1|	-	0.00074	19.3	0.0	0.0011	18.8	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336253437|ref|YP_004596544.1|	-	0.00082	19.1	0.0	0.0015	18.2	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|336253437|ref|YP_004596544.1|	-	0.0069	16.6	0.6	0.15	12.3	0.6	2.4	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.6	gi|336253437|ref|YP_004596544.1|	-	0.0081	16.6	0.2	0.018	15.4	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336253437|ref|YP_004596544.1|	-	0.021	15.0	0.2	0.096	12.9	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|336253437|ref|YP_004596544.1|	-	0.035	14.4	0.1	0.16	12.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|336253437|ref|YP_004596544.1|	-	0.062	13.2	0.0	0.16	11.9	0.0	1.6	2	0	0	2	2	2	0	NTPase
cobW	PF02492.19	gi|336253437|ref|YP_004596544.1|	-	0.12	11.9	0.1	0.21	11.2	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Dynamin_N	PF00350.23	gi|336253437|ref|YP_004596544.1|	-	0.15	12.1	0.0	0.23	11.5	0.0	1.3	1	0	0	1	1	1	0	Dynamin	family
RsgA_GTPase	PF03193.16	gi|336253437|ref|YP_004596544.1|	-	0.19	11.6	0.0	0.39	10.6	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
ABC-3	PF00950.17	gi|336253438|ref|YP_004596545.1|	-	2.6e-58	197.5	38.6	3.1e-58	197.3	38.6	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|336253438|ref|YP_004596545.1|	-	6.5e-06	25.4	38.0	6.5e-06	25.4	38.0	1.8	1	1	0	2	2	2	1	FecCD	transport	family
Cpn60_TCP1	PF00118.24	gi|336253439|ref|YP_004596546.1|	-	2.9e-167	557.2	12.9	3.3e-167	557.0	12.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Epimerase	PF01370.21	gi|336253440|ref|YP_004596547.1|	-	3.9e-51	173.9	0.0	4.5e-51	173.6	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253440|ref|YP_004596547.1|	-	2.1e-41	142.4	0.0	1.1e-40	140.1	0.0	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|336253440|ref|YP_004596547.1|	-	5.4e-16	58.6	0.0	2.9e-15	56.2	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|336253440|ref|YP_004596547.1|	-	2.1e-15	57.1	0.3	3.9e-15	56.2	0.1	1.5	2	0	0	2	2	2	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|336253440|ref|YP_004596547.1|	-	6.2e-14	51.8	0.0	7.2e-14	51.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336253440|ref|YP_004596547.1|	-	9.8e-14	51.0	0.0	1.2e-13	50.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|336253440|ref|YP_004596547.1|	-	1.5e-10	40.7	0.1	3.8e-05	23.0	0.0	2.8	1	1	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|336253440|ref|YP_004596547.1|	-	5.8e-07	29.2	0.4	2.7e-05	23.7	0.4	2.6	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|336253440|ref|YP_004596547.1|	-	5.9e-06	26.0	0.1	0.0002	21.0	0.1	2.0	2	0	0	2	2	2	1	NmrA-like	family
NAD_binding_7	PF13241.6	gi|336253440|ref|YP_004596547.1|	-	0.0041	17.5	0.0	0.0087	16.5	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Sacchrp_dh_NADP	PF03435.18	gi|336253440|ref|YP_004596547.1|	-	0.0048	17.1	0.2	0.011	16.0	0.2	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
DFP	PF04127.15	gi|336253440|ref|YP_004596547.1|	-	0.0053	16.6	0.1	0.01	15.7	0.1	1.5	1	0	0	1	1	1	1	DNA	/	pantothenate	metabolism	flavoprotein
KR	PF08659.10	gi|336253440|ref|YP_004596547.1|	-	0.012	15.5	0.0	0.054	13.4	0.0	2.2	3	0	0	3	3	3	0	KR	domain
NAD_binding_2	PF03446.15	gi|336253440|ref|YP_004596547.1|	-	0.018	15.2	0.0	0.095	12.9	0.0	2.1	2	1	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.18	gi|336253440|ref|YP_004596547.1|	-	0.028	14.7	0.1	0.056	13.7	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|336253440|ref|YP_004596547.1|	-	0.039	13.8	0.1	0.065	13.1	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|336253440|ref|YP_004596547.1|	-	0.051	14.1	0.1	0.12	12.9	0.1	1.8	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.20	gi|336253440|ref|YP_004596547.1|	-	0.061	13.4	0.0	0.13	12.3	0.0	1.6	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_3	PF03447.16	gi|336253440|ref|YP_004596547.1|	-	0.061	14.0	0.2	0.34	11.6	0.1	2.0	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
Ldh_1_N	PF00056.23	gi|336253440|ref|YP_004596547.1|	-	0.078	13.1	0.1	0.12	12.5	0.1	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336253440|ref|YP_004596547.1|	-	0.14	11.7	0.1	0.32	10.6	0.0	1.6	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
LPG_synthase_TM	PF03706.13	gi|336253441|ref|YP_004596548.1|	-	2.2e-36	125.9	44.5	2.2e-36	125.9	44.5	1.5	1	1	1	2	2	2	1	Lysylphosphatidylglycerol	synthase	TM	region
RGP	PF03214.13	gi|336253442|ref|YP_004596549.1|	-	7.9e-18	64.7	0.0	1e-17	64.3	0.0	1.2	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
SBP_bac_6	PF13343.6	gi|336253443|ref|YP_004596550.1|	-	5.4e-16	58.7	0.1	7.2e-16	58.3	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336253443|ref|YP_004596550.1|	-	2.2e-07	31.2	7.0	5.4e-07	29.9	7.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|336253443|ref|YP_004596550.1|	-	2.4e-07	30.9	2.7	3.3e-07	30.4	2.7	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|336253443|ref|YP_004596550.1|	-	2.4e-05	24.2	1.4	3.4e-05	23.7	1.4	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|336253444|ref|YP_004596551.1|	-	9.4e-28	97.2	53.4	5.6e-15	55.5	12.2	3.8	2	2	1	3	3	3	3	Binding-protein-dependent	transport	system	inner	membrane	component
PMT_2	PF13231.6	gi|336253445|ref|YP_004596552.1|	-	1.1e-13	51.7	12.5	1.1e-13	51.7	12.5	3.3	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|336253445|ref|YP_004596552.1|	-	0.00075	19.2	6.0	0.00075	19.2	6.0	2.0	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Gluconate_2-dh3	PF13618.6	gi|336253446|ref|YP_004596553.1|	-	3e-08	34.0	0.0	3.9e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
Pentapeptide	PF00805.22	gi|336253447|ref|YP_004596554.1|	-	1.1e-18	66.5	13.1	8.5e-09	34.9	0.3	3.6	1	1	1	3	3	3	3	Pentapeptide	repeats	(8	copies)
Ion_trans_2	PF07885.16	gi|336253447|ref|YP_004596554.1|	-	2.8e-14	52.8	0.2	2.8e-14	52.8	0.2	1.6	2	0	0	2	2	2	1	Ion	channel
Pentapeptide_4	PF13599.6	gi|336253447|ref|YP_004596554.1|	-	1.5e-13	50.7	1.8	2.3e-08	34.0	0.2	2.4	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.6	gi|336253447|ref|YP_004596554.1|	-	4.4e-10	39.5	10.3	0.00095	19.3	0.7	3.3	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Ion_trans	PF00520.31	gi|336253447|ref|YP_004596554.1|	-	0.076	12.2	0.0	0.094	11.9	0.0	1.2	1	0	0	1	1	1	0	Ion	transport	protein
DoxX	PF07681.12	gi|336253448|ref|YP_004596555.1|	-	5.4e-05	23.7	7.4	5.4e-05	23.7	7.4	1.4	2	0	0	2	2	2	1	DoxX
HR_lesion	PF05514.11	gi|336253448|ref|YP_004596555.1|	-	0.016	15.4	0.0	0.029	14.6	0.0	1.4	1	1	0	1	1	1	0	HR-like	lesion-inducing
DoxX_2	PF13564.6	gi|336253448|ref|YP_004596555.1|	-	0.023	14.8	5.5	0.033	14.3	5.5	1.2	1	0	0	1	1	1	0	DoxX-like	family
FA_desaturase	PF00487.24	gi|336253448|ref|YP_004596555.1|	-	0.042	13.7	0.0	0.048	13.5	0.0	1.1	1	0	0	1	1	1	0	Fatty	acid	desaturase
Glycos_transf_2	PF00535.26	gi|336253449|ref|YP_004596556.1|	-	4.1e-20	72.3	0.0	5.2e-20	71.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253449|ref|YP_004596556.1|	-	6.1e-05	23.0	0.1	7.5e-05	22.7	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
GMC_oxred_C	PF05199.13	gi|336253450|ref|YP_004596557.1|	-	2.3e-23	83.3	0.2	8.4e-23	81.5	0.2	2.0	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|336253450|ref|YP_004596557.1|	-	1.8e-14	53.9	0.0	2.9e-14	53.1	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
FAD_binding_2	PF00890.24	gi|336253450|ref|YP_004596557.1|	-	6.4e-09	35.4	0.5	0.0018	17.5	0.2	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|336253450|ref|YP_004596557.1|	-	2.8e-07	30.1	1.6	0.00053	19.3	0.1	2.1	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|336253450|ref|YP_004596557.1|	-	1e-06	28.6	5.8	1.4e-05	24.9	3.8	3.0	3	1	0	3	3	3	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|336253450|ref|YP_004596557.1|	-	6.7e-06	25.1	0.4	0.00072	18.4	0.2	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|336253450|ref|YP_004596557.1|	-	3.4e-05	23.2	0.0	0.0012	18.1	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253450|ref|YP_004596557.1|	-	0.0001	22.5	0.2	0.00047	20.3	0.2	2.2	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|336253450|ref|YP_004596557.1|	-	0.00025	20.2	0.3	0.00035	19.7	0.3	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|336253450|ref|YP_004596557.1|	-	0.0072	16.0	0.0	0.026	14.2	0.0	1.9	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Fer4_7	PF12838.7	gi|336253450|ref|YP_004596557.1|	-	0.026	15.1	2.3	0.065	13.8	2.3	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
TrkA_N	PF02254.18	gi|336253450|ref|YP_004596557.1|	-	0.033	14.4	0.0	0.42	10.9	0.0	2.4	2	0	0	2	2	2	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|336253450|ref|YP_004596557.1|	-	0.041	13.8	0.0	0.074	12.9	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336253450|ref|YP_004596557.1|	-	0.046	14.3	0.1	0.35	11.5	0.0	2.3	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|336253450|ref|YP_004596557.1|	-	0.051	14.1	0.1	0.71	10.5	0.1	2.6	3	0	0	3	3	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336253450|ref|YP_004596557.1|	-	0.058	12.7	0.0	0.12	11.6	0.0	1.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_10	PF13237.6	gi|336253450|ref|YP_004596557.1|	-	0.06	13.5	0.1	0.12	12.5	0.1	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336253450|ref|YP_004596557.1|	-	0.076	12.9	1.0	0.2	11.6	1.0	1.8	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Thi4	PF01946.17	gi|336253450|ref|YP_004596557.1|	-	0.17	11.1	0.0	0.29	10.3	0.0	1.3	1	0	0	1	1	1	0	Thi4	family
Shikimate_DH	PF01488.20	gi|336253450|ref|YP_004596557.1|	-	0.19	11.8	0.0	0.49	10.4	0.0	1.6	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Fer4_21	PF14697.6	gi|336253450|ref|YP_004596557.1|	-	0.2	11.8	0.6	0.38	10.9	0.6	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336253450|ref|YP_004596557.1|	-	0.23	11.0	0.1	0.42	10.2	0.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
SRAP	PF02586.14	gi|336253451|ref|YP_004596558.1|	-	1.8e-67	227.1	0.0	2e-67	226.9	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
PUA	PF01472.20	gi|336253452|ref|YP_004596559.1|	-	1.2e-16	60.4	1.3	1.9e-16	59.8	1.3	1.3	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|336253452|ref|YP_004596559.1|	-	0.016	15.4	0.0	0.024	14.9	0.0	1.2	1	0	0	1	1	1	0	UPF0113	PUA	domain
Inhibitor_I24	PF10465.9	gi|336253452|ref|YP_004596559.1|	-	0.086	12.8	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	PinA	peptidase	inhibitor
ADD_ATRX	PF17981.1	gi|336253453|ref|YP_004596560.1|	-	0.016	15.1	0.3	0.67	9.9	0.1	2.1	2	0	0	2	2	2	0	Cysteine	Rich	ADD	domain
Tnp_zf-ribbon_2	PF13842.6	gi|336253453|ref|YP_004596560.1|	-	0.041	14.7	4.1	2.4	9.0	0.6	2.2	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DUF1930	PF09122.10	gi|336253453|ref|YP_004596560.1|	-	0.053	13.5	0.0	0.084	12.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1930)
DUF3268	PF11672.8	gi|336253453|ref|YP_004596560.1|	-	0.091	13.1	0.4	0.12	12.7	0.4	1.2	1	0	0	1	1	1	0	zinc-finger-containing	domain
Zn-ribbon_8	PF09723.10	gi|336253453|ref|YP_004596560.1|	-	0.17	12.0	3.8	10	6.3	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
ABC2_membrane_2	PF12679.7	gi|336253454|ref|YP_004596561.1|	-	5.7e-38	130.8	13.5	8e-37	127.1	13.5	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336253454|ref|YP_004596561.1|	-	1.9e-09	37.1	4.2	2.6e-09	36.6	4.2	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336253454|ref|YP_004596561.1|	-	9.9e-07	28.4	5.0	1.4e-06	27.9	5.0	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.6	gi|336253454|ref|YP_004596561.1|	-	2.1e-06	27.4	1.6	2.1e-06	27.4	1.6	1.6	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|336253454|ref|YP_004596561.1|	-	0.00035	20.6	4.1	0.00051	20.0	4.1	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Kinocilin	PF15033.6	gi|336253454|ref|YP_004596561.1|	-	0.13	11.9	5.5	0.26	10.9	5.5	1.5	1	0	0	1	1	1	0	Kinocilin	protein
DUF1129	PF06570.11	gi|336253454|ref|YP_004596561.1|	-	0.92	9.0	6.0	2.6	7.5	3.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
MTABC_N	PF16185.5	gi|336253454|ref|YP_004596561.1|	-	1.8	8.0	9.3	2.1	7.8	6.8	2.1	1	1	1	2	2	2	0	Mitochondrial	ABC-transporter	N-terminal	five	TM	region
ABC_tran	PF00005.27	gi|336253455|ref|YP_004596562.1|	-	1.9e-28	99.7	0.0	6.7e-28	97.9	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|336253455|ref|YP_004596562.1|	-	1.4e-12	48.0	0.1	2.8e-08	34.0	0.0	2.4	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336253455|ref|YP_004596562.1|	-	2.9e-06	27.9	0.0	1.1e-05	26.0	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|336253455|ref|YP_004596562.1|	-	0.0011	18.7	0.2	0.0044	16.8	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|336253455|ref|YP_004596562.1|	-	0.0084	15.6	0.0	3.6	7.0	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|336253455|ref|YP_004596562.1|	-	0.016	15.7	0.0	0.025	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336253455|ref|YP_004596562.1|	-	0.024	14.3	0.0	0.047	13.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|336253455|ref|YP_004596562.1|	-	0.031	14.2	0.0	0.05	13.5	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|336253455|ref|YP_004596562.1|	-	0.08	13.3	0.4	0.17	12.3	0.4	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|336253455|ref|YP_004596562.1|	-	0.13	12.0	0.0	12	5.6	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
RNB	PF00773.19	gi|336253456|ref|YP_004596563.1|	-	9e-83	278.3	0.0	1.7e-81	274.1	0.0	2.1	1	1	0	1	1	1	1	RNB	domain
Acetyltransf_1	PF00583.25	gi|336253457|ref|YP_004596564.1|	-	5.1e-11	42.8	0.0	6.6e-11	42.5	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336253457|ref|YP_004596564.1|	-	1.3e-08	34.8	0.0	1.9e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336253457|ref|YP_004596564.1|	-	2.3e-06	27.9	0.0	3e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336253457|ref|YP_004596564.1|	-	0.027	14.5	0.0	0.043	13.8	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
Acetyltransf_1	PF00583.25	gi|336253458|ref|YP_004596565.1|	-	7.9e-13	48.7	0.0	9.4e-13	48.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336253458|ref|YP_004596565.1|	-	4.5e-06	26.6	0.0	6.3e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336253458|ref|YP_004596565.1|	-	5.9e-05	23.4	0.0	9.3e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336253458|ref|YP_004596565.1|	-	0.0025	18.5	0.0	0.0031	18.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336253458|ref|YP_004596565.1|	-	0.012	15.6	0.0	0.028	14.4	0.0	1.6	2	0	0	2	2	2	0	FR47-like	protein
NAT	PF04768.13	gi|336253458|ref|YP_004596565.1|	-	0.058	13.1	0.0	0.13	11.9	0.0	1.4	1	1	0	1	1	1	0	NAT,	N-acetyltransferase,	of	N-acetylglutamate	synthase
Pyr_redox_2	PF07992.14	gi|336253459|ref|YP_004596566.1|	-	1.3e-34	119.8	0.1	1.8e-34	119.3	0.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336253459|ref|YP_004596566.1|	-	1.1e-08	35.5	0.9	2.1e-07	31.4	0.0	2.7	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|336253459|ref|YP_004596566.1|	-	8.5e-08	32.4	0.0	4.1e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
NAD_binding_9	PF13454.6	gi|336253459|ref|YP_004596566.1|	-	0.00017	21.6	3.1	0.069	13.1	0.1	2.7	3	0	0	3	3	3	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|336253459|ref|YP_004596566.1|	-	0.11	11.5	0.0	1.7	7.6	0.0	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Peptidase_M43	PF05572.13	gi|336253460|ref|YP_004596567.1|	-	0.33	10.9	3.2	0.41	10.5	1.8	2.0	2	0	0	2	2	2	0	Pregnancy-associated	plasma	protein-A
PfkB	PF00294.24	gi|336253461|ref|YP_004596568.1|	-	5.9e-50	170.3	0.0	7.2e-50	170.0	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
RTC	PF01137.21	gi|336253462|ref|YP_004596569.1|	-	1.1e-64	217.6	0.0	1.4e-64	217.3	0.0	1.1	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|336253462|ref|YP_004596569.1|	-	2.3e-10	40.9	0.3	3.4e-09	37.2	0.3	2.3	2	0	0	2	2	2	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
SRP_TPR_like	PF17004.5	gi|336253463|ref|YP_004596570.1|	-	0.042	13.9	0.0	0.095	12.7	0.0	1.6	1	0	0	1	1	1	0	Putative	TPR-like	repeat
CBM_17_28	PF03424.14	gi|336253463|ref|YP_004596570.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Carbohydrate	binding	domain	(family	17/28)
tRNA-synt_1	PF00133.22	gi|336253464|ref|YP_004596571.1|	-	2.3e-124	415.9	0.1	4.7e-123	411.5	0.1	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|336253464|ref|YP_004596571.1|	-	8e-35	120.0	0.9	1.2e-34	119.5	0.2	1.7	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|336253464|ref|YP_004596571.1|	-	7.6e-21	74.3	0.5	1.1e-09	37.5	0.0	3.4	3	0	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|336253464|ref|YP_004596571.1|	-	7e-07	28.9	0.0	1.6e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|336253464|ref|YP_004596571.1|	-	4.6e-05	22.9	0.0	0.004	16.5	0.0	2.4	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|336253464|ref|YP_004596571.1|	-	0.00076	18.5	0.0	0.0025	16.8	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
Zn-ribbon_8	PF09723.10	gi|336253464|ref|YP_004596571.1|	-	0.0034	17.5	3.1	0.044	13.9	0.8	2.7	2	0	0	2	2	2	1	Zinc	ribbon	domain
SpecificRecomb	PF10136.9	gi|336253464|ref|YP_004596571.1|	-	0.096	11.0	0.0	0.15	10.3	0.0	1.2	1	0	0	1	1	1	0	Site-specific	recombinase
UPF0547	PF10571.9	gi|336253464|ref|YP_004596571.1|	-	7.6	6.7	8.3	2	8.6	0.4	3.0	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
HalOD1	PF18545.1	gi|336253465|ref|YP_004596572.1|	-	8.5e-17	61.2	0.0	9.7e-17	61.0	0.0	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
RVT_3	PF13456.6	gi|336253466|ref|YP_004596573.1|	-	5.8e-10	39.0	0.0	7.9e-10	38.6	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|336253466|ref|YP_004596573.1|	-	1e-08	35.5	0.0	1.8e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	RNase	H
PAS_4	PF08448.10	gi|336253467|ref|YP_004596574.1|	-	4.3e-31	107.4	7.3	3.6e-14	52.9	0.3	3.9	3	1	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.26	gi|336253467|ref|YP_004596574.1|	-	9.8e-29	100.1	0.0	4.8e-28	97.9	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336253467|ref|YP_004596574.1|	-	3.8e-18	65.6	0.0	2.2e-06	27.8	0.0	4.2	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.25	gi|336253467|ref|YP_004596574.1|	-	2.8e-13	49.9	1.6	8.7e-05	22.5	0.0	5.4	5	1	0	5	5	5	2	PAS	fold
PAS_3	PF08447.12	gi|336253467|ref|YP_004596574.1|	-	8.4e-11	42.0	1.5	0.00021	21.5	0.0	5.4	6	0	0	6	6	6	2	PAS	fold
PAS_8	PF13188.7	gi|336253467|ref|YP_004596574.1|	-	1e-10	41.4	0.5	0.00012	22.0	0.0	4.2	3	1	0	3	3	3	2	PAS	domain
HisKA	PF00512.25	gi|336253467|ref|YP_004596574.1|	-	3.5e-10	39.8	1.4	8.5e-10	38.5	0.1	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|336253467|ref|YP_004596574.1|	-	0.0037	17.2	1.8	0.0044	17.0	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|336253467|ref|YP_004596574.1|	-	0.0046	17.1	0.1	19	5.4	0.0	4.5	4	2	0	4	4	4	0	PAS	fold
HATPase_c_5	PF14501.6	gi|336253467|ref|YP_004596574.1|	-	0.029	14.3	0.0	0.07	13.0	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
HTH_11	PF08279.12	gi|336253467|ref|YP_004596574.1|	-	0.038	13.9	0.0	0.12	12.3	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
Phage_GP20	PF06810.11	gi|336253467|ref|YP_004596574.1|	-	0.2	11.5	1.3	11	5.9	0.2	2.6	2	1	0	2	2	2	0	Phage	minor	structural	protein	GP20
DUF1405	PF07187.11	gi|336253468|ref|YP_004596575.1|	-	2.9e-49	167.1	16.7	4e-49	166.6	16.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
ADC	PF06314.11	gi|336253469|ref|YP_004596576.1|	-	1.5e-15	57.4	0.1	2.6e-15	56.6	0.1	1.3	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
SOR_SNZ	PF01680.17	gi|336253470|ref|YP_004596577.1|	-	3.6e-102	340.5	9.2	4.4e-102	340.2	9.2	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|336253470|ref|YP_004596577.1|	-	1.6e-10	40.7	6.6	3.8e-07	29.7	1.0	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|336253470|ref|YP_004596577.1|	-	4.6e-05	22.7	1.3	0.015	14.4	0.1	2.4	2	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
OMPdecase	PF00215.24	gi|336253470|ref|YP_004596577.1|	-	0.00083	19.0	0.2	0.79	9.3	0.0	2.4	1	1	1	2	2	2	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IGPS	PF00218.21	gi|336253470|ref|YP_004596577.1|	-	0.0055	15.9	0.1	0.15	11.2	0.0	2.4	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
NanE	PF04131.14	gi|336253470|ref|YP_004596577.1|	-	0.014	14.5	1.6	0.36	10.0	0.1	2.8	2	1	1	3	3	3	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
FMN_dh	PF01070.18	gi|336253470|ref|YP_004596577.1|	-	0.015	14.3	0.6	0.13	11.2	0.0	2.2	2	1	0	2	2	2	0	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|336253470|ref|YP_004596577.1|	-	0.055	12.9	0.4	0.59	9.6	0.0	2.6	2	1	0	2	2	2	0	Histidine	biosynthesis	protein
TMP-TENI	PF02581.17	gi|336253470|ref|YP_004596577.1|	-	0.064	12.6	1.2	0.36	10.1	0.1	2.2	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
MttA_Hcf106	PF02416.16	gi|336253470|ref|YP_004596577.1|	-	0.17	11.3	2.5	1.4	8.3	0.1	2.7	3	0	0	3	3	3	0	mttA/Hcf106	family
zf-C2HC5	PF06221.13	gi|336253471|ref|YP_004596578.1|	-	0.00027	20.8	0.5	0.00027	20.8	0.5	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|336253471|ref|YP_004596578.1|	-	0.00028	20.8	0.9	0.00033	20.6	0.9	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|336253471|ref|YP_004596578.1|	-	0.00034	20.1	0.7	0.086	12.4	0.1	2.1	2	0	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|336253471|ref|YP_004596578.1|	-	0.00066	19.3	1.7	0.025	14.3	0.4	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253471|ref|YP_004596578.1|	-	0.00093	18.5	1.6	0.24	10.9	0.4	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336253471|ref|YP_004596578.1|	-	0.0045	17.1	2.5	0.0085	16.2	2.5	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF1272	PF06906.11	gi|336253471|ref|YP_004596578.1|	-	0.0088	16.1	0.8	0.01	15.9	0.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
YhfH	PF14149.6	gi|336253471|ref|YP_004596578.1|	-	0.014	15.3	1.8	0.88	9.6	0.2	2.1	1	1	1	2	2	2	0	YhfH-like	protein
Rubredoxin_2	PF18073.1	gi|336253471|ref|YP_004596578.1|	-	0.016	15.0	2.0	0.036	13.8	2.0	1.6	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|336253471|ref|YP_004596578.1|	-	0.017	15.1	0.3	0.021	14.8	0.3	1.1	1	0	0	1	1	1	0	zinc-ribbons
HypA	PF01155.19	gi|336253471|ref|YP_004596578.1|	-	0.03	14.3	0.8	0.032	14.2	0.8	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_9	PF14369.6	gi|336253471|ref|YP_004596578.1|	-	0.052	13.8	1.4	0.11	12.7	1.3	1.6	1	1	1	2	2	2	0	zinc-ribbon
MCM_OB	PF17207.3	gi|336253471|ref|YP_004596578.1|	-	0.06	13.2	0.2	0.06	13.2	0.2	1.0	1	0	0	1	1	1	0	MCM	OB	domain
OrfB_Zn_ribbon	PF07282.11	gi|336253471|ref|YP_004596578.1|	-	0.11	12.5	0.9	0.13	12.2	0.9	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-CCHC_5	PF14787.6	gi|336253471|ref|YP_004596578.1|	-	0.13	12.0	4.1	5.1	6.9	0.2	2.2	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
Zn_ribbon_SprT	PF17283.2	gi|336253471|ref|YP_004596578.1|	-	0.29	11.1	2.7	1.7	8.6	2.7	1.9	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|336253471|ref|YP_004596578.1|	-	0.74	10.0	3.7	3.7	7.7	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-C2H2_11	PF16622.5	gi|336253471|ref|YP_004596578.1|	-	1.1	9.0	3.5	1.3	8.8	0.4	2.1	1	1	1	2	2	2	0	zinc-finger	C2H2-type
ELFV_dehydrog	PF00208.21	gi|336253472|ref|YP_004596579.1|	-	3.6e-72	243.0	0.1	5.1e-72	242.5	0.1	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|336253472|ref|YP_004596579.1|	-	2.9e-56	188.9	0.0	4.8e-56	188.2	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|336253472|ref|YP_004596579.1|	-	0.0008	18.8	0.0	0.0014	18.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Bac_GDH	PF05088.12	gi|336253472|ref|YP_004596579.1|	-	0.025	12.1	0.1	0.083	10.4	0.0	1.7	2	0	0	2	2	2	0	Bacterial	NAD-glutamate	dehydrogenase
Gp_dh_N	PF00044.24	gi|336253472|ref|YP_004596579.1|	-	0.1	12.9	0.0	0.7	10.3	0.0	2.3	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
ATP-synt_I	PF03899.15	gi|336253473|ref|YP_004596580.1|	-	0.032	14.6	2.6	0.032	14.6	2.6	2.0	2	0	0	2	2	2	0	ATP	synthase	I	chain
DUF2070	PF09843.9	gi|336253473|ref|YP_004596580.1|	-	0.081	11.2	2.5	0.092	11.0	2.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
VirB3	PF05101.13	gi|336253473|ref|YP_004596580.1|	-	0.9	9.8	0.0	0.9	9.8	0.0	2.5	1	1	1	2	2	2	0	Type	IV	secretory	pathway,	VirB3-like	protein
GHMP_kinases_N	PF00288.26	gi|336253474|ref|YP_004596581.1|	-	4e-15	55.8	3.8	7.4e-15	54.9	1.6	2.4	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|336253474|ref|YP_004596581.1|	-	1.3e-07	31.9	0.0	2.9e-07	30.7	0.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
MFS_1	PF07690.16	gi|336253475|ref|YP_004596582.1|	-	2.3e-30	105.7	64.3	1.1e-29	103.5	37.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
LHC	PF00556.20	gi|336253475|ref|YP_004596582.1|	-	0.074	13.3	0.7	0.074	13.3	0.7	3.4	4	0	0	4	4	4	0	Antenna	complex	alpha/beta	subunit
Pyr_redox_2	PF07992.14	gi|336253477|ref|YP_004596584.1|	-	1.7e-47	162.1	0.3	2.2e-47	161.7	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336253477|ref|YP_004596584.1|	-	5.2e-13	48.9	0.0	6.3e-10	38.8	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336253477|ref|YP_004596584.1|	-	2.3e-11	44.1	0.3	1.5e-05	25.4	0.0	3.4	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Rubredoxin_C	PF18267.1	gi|336253477|ref|YP_004596584.1|	-	4.3e-09	36.2	0.0	1.4e-07	31.3	0.0	2.6	2	0	0	2	2	2	1	Rubredoxin	NAD+	reductase	C-terminal	domain
NAD_binding_8	PF13450.6	gi|336253477|ref|YP_004596584.1|	-	0.00069	19.8	0.2	0.22	11.8	0.0	3.3	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|336253477|ref|YP_004596584.1|	-	0.00089	18.1	0.1	0.06	12.0	0.0	3.0	3	1	1	4	4	4	1	HI0933-like	protein
Thi4	PF01946.17	gi|336253477|ref|YP_004596584.1|	-	0.0087	15.3	0.1	0.099	11.9	0.0	2.3	2	0	0	2	2	2	1	Thi4	family
K_oxygenase	PF13434.6	gi|336253477|ref|YP_004596584.1|	-	0.058	12.5	0.0	0.97	8.5	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Reductase_C	PF14759.6	gi|336253477|ref|YP_004596584.1|	-	0.12	13.0	0.0	0.39	11.3	0.0	1.9	1	0	0	1	1	1	0	Reductase	C-terminal
DAO	PF01266.24	gi|336253477|ref|YP_004596584.1|	-	0.22	11.0	4.9	1.7	8.1	0.0	3.1	4	0	0	4	4	4	0	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|336253477|ref|YP_004596584.1|	-	0.34	10.9	4.0	3.7	7.5	0.0	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
NrfD	PF03916.14	gi|336253478|ref|YP_004596585.1|	-	1.9e-20	73.8	21.2	1.9e-20	73.8	21.2	1.8	2	0	0	2	2	2	1	Polysulphide	reductase,	NrfD
DUF996	PF06195.13	gi|336253478|ref|YP_004596585.1|	-	0.18	12.1	0.2	0.18	12.1	0.2	3.9	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF996)
DUF2583	PF10762.9	gi|336253478|ref|YP_004596585.1|	-	3.1	8.3	7.2	1.7	9.1	3.8	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
RHH_1	PF01402.21	gi|336253479|ref|YP_004596586.1|	-	0.015	15.2	0.3	0.028	14.4	0.3	1.4	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Vac_Fusion	PF02346.16	gi|336253479|ref|YP_004596586.1|	-	0.18	11.4	0.1	0.34	10.6	0.0	1.5	2	0	0	2	2	2	0	Chordopoxvirus	multifunctional	envelope	protein	A27
YihI	PF04220.12	gi|336253480|ref|YP_004596587.1|	-	0.013	15.2	0.0	0.015	15.1	0.0	1.1	1	0	0	1	1	1	0	Der	GTPase	activator	(YihI)
CheD	PF03975.13	gi|336253481|ref|YP_004596588.1|	-	1.5e-28	99.0	0.0	2.1e-28	98.6	0.0	1.2	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
Aminotran_5	PF00266.19	gi|336253482|ref|YP_004596589.1|	-	8.1e-54	183.0	0.0	1.4e-53	182.2	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|336253482|ref|YP_004596589.1|	-	0.2	10.2	0.0	0.28	9.7	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Lar_restr_allev	PF14354.6	gi|336253483|ref|YP_004596590.1|	-	0.02	15.2	0.3	0.024	15.0	0.3	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
TMF_TATA_bd	PF12325.8	gi|336253484|ref|YP_004596591.1|	-	0.002	18.3	3.3	0.002	18.3	3.3	2.2	2	0	0	2	2	2	1	TATA	element	modulatory	factor	1	TATA	binding
Med10	PF09748.9	gi|336253484|ref|YP_004596591.1|	-	0.0074	16.2	0.1	0.077	13.0	0.0	2.1	2	0	0	2	2	2	1	Transcription	factor	subunit	Med10	of	Mediator	complex
Spc7	PF08317.11	gi|336253484|ref|YP_004596591.1|	-	0.046	12.6	5.9	0.072	12.0	5.7	1.4	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF948	PF06103.11	gi|336253484|ref|YP_004596591.1|	-	0.059	13.6	1.8	0.34	11.2	0.0	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
HlyD_2	PF12700.7	gi|336253484|ref|YP_004596591.1|	-	0.092	11.5	0.2	0.2	10.4	0.0	1.5	2	0	0	2	2	2	0	HlyD	family	secretion	protein
CLZ	PF16526.5	gi|336253484|ref|YP_004596591.1|	-	0.67	10.3	5.2	4.4	7.7	0.1	2.6	2	1	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Mobilization_B	PF17511.2	gi|336253484|ref|YP_004596591.1|	-	1.6	9.1	5.8	3	8.2	1.6	2.2	1	1	1	2	2	2	0	Mobilization	protein	B
ARGLU	PF15346.6	gi|336253484|ref|YP_004596591.1|	-	2.2	8.1	10.0	7.8	6.4	3.5	2.3	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
DUF3073	PF11273.8	gi|336253484|ref|YP_004596591.1|	-	2.9	8.7	5.4	1.3	9.8	2.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3073)
DUF2203	PF09969.9	gi|336253484|ref|YP_004596591.1|	-	3.2	8.5	5.7	11	6.8	5.7	1.9	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Osmo_CC	PF08946.10	gi|336253484|ref|YP_004596591.1|	-	4.8	7.5	8.2	9	6.6	0.9	2.6	2	1	0	2	2	2	0	Osmosensory	transporter	coiled	coil
DUF3391	PF11871.8	gi|336253484|ref|YP_004596591.1|	-	6.3	7.3	10.7	0.53	10.8	5.2	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3391)
Histone_HNS	PF00816.21	gi|336253484|ref|YP_004596591.1|	-	7.9	7.4	7.6	2e+02	2.9	7.3	2.3	1	1	0	1	1	1	0	H-NS	histone	family
UvrA_inter	PF17760.1	gi|336253485|ref|YP_004596592.1|	-	1.4e-32	112.0	0.9	5.6e-32	110.1	0.0	2.5	3	0	0	3	3	2	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|336253485|ref|YP_004596592.1|	-	2.1e-30	105.3	0.6	5.4e-28	97.5	0.1	3.6	4	0	0	4	4	4	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|336253485|ref|YP_004596592.1|	-	5.5e-22	78.7	0.0	1.2e-11	45.3	0.0	4.2	3	2	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|336253485|ref|YP_004596592.1|	-	1.1e-12	47.9	0.1	0.0094	15.4	0.1	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336253485|ref|YP_004596592.1|	-	1e-08	34.8	0.0	0.0024	17.5	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336253485|ref|YP_004596592.1|	-	1.4e-07	32.0	0.1	0.025	15.0	0.0	3.2	3	1	0	3	3	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336253485|ref|YP_004596592.1|	-	5.6e-06	26.7	0.1	0.12	12.7	0.0	3.3	3	0	0	3	3	2	2	AAA	domain
AAA_21	PF13304.6	gi|336253485|ref|YP_004596592.1|	-	4.8e-05	23.3	8.0	0.29	10.9	0.0	4.4	4	0	0	4	4	4	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|336253485|ref|YP_004596592.1|	-	7.5e-05	22.6	0.1	0.39	10.4	0.0	4.1	4	1	0	4	4	4	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|336253485|ref|YP_004596592.1|	-	0.00016	21.7	0.1	0.19	11.7	0.0	3.5	4	0	0	4	4	3	1	AAA	domain
ATPase	PF06745.13	gi|336253485|ref|YP_004596592.1|	-	0.00018	20.9	0.1	0.11	11.8	0.0	2.8	3	0	0	3	3	3	1	KaiC
RsgA_GTPase	PF03193.16	gi|336253485|ref|YP_004596592.1|	-	0.00018	21.4	0.0	0.53	10.2	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
DnaJ_CXXCXGXG	PF00684.19	gi|336253485|ref|YP_004596592.1|	-	0.00024	21.4	9.9	0.013	15.8	0.8	3.8	4	0	0	4	4	3	1	DnaJ	central	domain
AAA_18	PF13238.6	gi|336253485|ref|YP_004596592.1|	-	0.00025	21.6	0.4	0.79	10.3	0.0	3.6	3	0	0	3	3	3	1	AAA	domain
cobW	PF02492.19	gi|336253485|ref|YP_004596592.1|	-	0.00027	20.6	0.1	0.046	13.3	0.0	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_25	PF13481.6	gi|336253485|ref|YP_004596592.1|	-	0.00087	18.9	0.0	1.4	8.4	0.0	3.2	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|336253485|ref|YP_004596592.1|	-	0.00092	19.8	0.1	0.53	10.8	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
APS_kinase	PF01583.20	gi|336253485|ref|YP_004596592.1|	-	0.001	19.0	0.1	1.1	9.2	0.0	2.7	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_33	PF13671.6	gi|336253485|ref|YP_004596592.1|	-	0.0013	18.9	0.1	1.5	9.0	0.0	3.4	4	1	0	4	4	3	1	AAA	domain
Viral_helicase1	PF01443.18	gi|336253485|ref|YP_004596592.1|	-	0.008	15.9	0.0	0.45	10.2	0.0	2.4	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
NACHT	PF05729.12	gi|336253485|ref|YP_004596592.1|	-	0.014	15.3	0.0	0.79	9.6	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
DUF2075	PF09848.9	gi|336253485|ref|YP_004596592.1|	-	0.022	14.0	0.1	5.8	6.1	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
ATPase_2	PF01637.18	gi|336253485|ref|YP_004596592.1|	-	0.026	14.4	0.0	8.1	6.3	0.0	2.5	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
Zn_Tnp_IS91	PF14319.6	gi|336253485|ref|YP_004596592.1|	-	0.033	14.2	1.9	1.9	8.6	0.0	3.2	3	0	0	3	3	3	0	Transposase	zinc-binding	domain
NB-ARC	PF00931.22	gi|336253485|ref|YP_004596592.1|	-	0.046	12.9	0.0	0.81	8.8	0.0	2.5	2	0	0	2	2	2	0	NB-ARC	domain
AAA_30	PF13604.6	gi|336253485|ref|YP_004596592.1|	-	0.061	13.0	0.4	3.3	7.4	0.0	2.9	4	0	0	4	4	2	0	AAA	domain
Zn-ribbon_8	PF09723.10	gi|336253485|ref|YP_004596592.1|	-	0.082	13.0	15.0	5.6	7.2	1.1	4.6	4	0	0	4	4	4	0	Zinc	ribbon	domain
AAA_24	PF13479.6	gi|336253485|ref|YP_004596592.1|	-	0.095	12.4	1.3	4	7.1	0.0	3.2	4	0	0	4	4	3	0	AAA	domain
RNA_helicase	PF00910.22	gi|336253485|ref|YP_004596592.1|	-	0.1	13.0	0.1	3.7	8.0	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
NMDAR2_C	PF10565.9	gi|336253485|ref|YP_004596592.1|	-	0.17	10.7	0.0	0.27	10.1	0.0	1.2	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
DUF3987	PF13148.6	gi|336253485|ref|YP_004596592.1|	-	0.18	10.8	0.1	5.9	5.8	0.0	3.0	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3987)
NTPase_1	PF03266.15	gi|336253485|ref|YP_004596592.1|	-	0.21	11.5	0.6	1.6	8.6	0.0	2.5	2	0	0	2	2	2	0	NTPase
DZR	PF12773.7	gi|336253485|ref|YP_004596592.1|	-	0.53	10.3	8.3	4.8	7.3	0.4	3.9	4	0	0	4	4	4	0	Double	zinc	ribbon
Anti-TRAP	PF15777.5	gi|336253485|ref|YP_004596592.1|	-	0.79	9.7	9.8	10	6.2	0.0	4.2	4	0	0	4	4	4	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DUF87	PF01935.17	gi|336253485|ref|YP_004596592.1|	-	1	9.4	0.0	1	9.4	0.0	3.0	4	0	0	4	4	3	0	Helicase	HerA,	central	domain
Methyltransf_11	PF08241.12	gi|336253486|ref|YP_004596593.1|	-	1.4e-23	83.4	0.1	2.4e-23	82.6	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336253486|ref|YP_004596593.1|	-	1.3e-21	77.1	0.1	2.4e-21	76.2	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253486|ref|YP_004596593.1|	-	1.3e-21	76.9	0.0	1.7e-21	76.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336253486|ref|YP_004596593.1|	-	1.1e-17	64.4	0.0	1.4e-17	64.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336253486|ref|YP_004596593.1|	-	2e-15	57.3	0.0	3.5e-15	56.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336253486|ref|YP_004596593.1|	-	6.8e-10	38.7	0.0	9.4e-10	38.2	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|336253486|ref|YP_004596593.1|	-	1.8e-07	31.0	0.0	2.5e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|336253486|ref|YP_004596593.1|	-	1.1e-06	28.2	0.0	1e-05	25.0	0.0	1.9	2	0	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_9	PF08003.11	gi|336253486|ref|YP_004596593.1|	-	2e-06	27.0	0.0	2.7e-06	26.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TPMT	PF05724.11	gi|336253486|ref|YP_004596593.1|	-	1e-05	25.3	0.0	1.6e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_32	PF13679.6	gi|336253486|ref|YP_004596593.1|	-	6.3e-05	23.0	0.1	0.00011	22.2	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
DREV	PF05219.12	gi|336253486|ref|YP_004596593.1|	-	0.00023	20.4	0.0	0.00031	19.9	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
NodS	PF05401.11	gi|336253486|ref|YP_004596593.1|	-	0.00068	19.3	0.0	0.00094	18.8	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_4	PF02390.17	gi|336253486|ref|YP_004596593.1|	-	0.0017	17.8	0.0	0.45	10.0	0.0	2.2	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_29	PF03141.16	gi|336253486|ref|YP_004596593.1|	-	0.0027	16.3	0.0	0.0044	15.6	0.0	1.3	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.14	gi|336253486|ref|YP_004596593.1|	-	0.0046	16.5	0.0	0.0072	15.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
CheR	PF01739.18	gi|336253486|ref|YP_004596593.1|	-	0.0092	15.5	0.0	0.56	9.6	0.0	2.4	1	1	1	2	2	2	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_24	PF13578.6	gi|336253486|ref|YP_004596593.1|	-	0.014	16.4	0.1	0.039	15.0	0.1	1.8	2	0	0	2	2	1	0	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|336253486|ref|YP_004596593.1|	-	0.038	13.8	0.0	0.094	12.5	0.0	1.6	1	1	0	1	1	1	0	Hypothetical	methyltransferase
TehB	PF03848.14	gi|336253486|ref|YP_004596593.1|	-	0.049	13.1	0.0	0.066	12.6	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
PCMT	PF01135.19	gi|336253486|ref|YP_004596593.1|	-	0.067	12.9	0.0	0.12	12.2	0.0	1.3	2	0	0	2	2	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|336253486|ref|YP_004596593.1|	-	0.19	11.1	0.0	0.28	10.5	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Sortilin-Vps10	PF15902.5	gi|336253487|ref|YP_004596594.1|	-	2e-14	53.3	0.0	4.8e-06	25.6	0.0	3.9	1	1	2	3	3	3	3	Sortilin,	neurotensin	receptor	3,
BNR	PF02012.20	gi|336253487|ref|YP_004596594.1|	-	1.1e-10	39.8	7.5	0.56	10.4	0.1	6.1	5	0	0	5	5	5	5	BNR/Asp-box	repeat
PSII_BNR	PF14870.6	gi|336253487|ref|YP_004596594.1|	-	0.00012	21.5	0.8	0.097	11.9	0.0	3.3	2	1	1	4	4	4	2	Photosynthesis	system	II	assembly	factor	YCF48
MatE	PF01554.18	gi|336253489|ref|YP_004596596.1|	-	0.035	13.7	3.5	0.047	13.3	2.5	1.6	1	1	1	2	2	2	0	MatE
DUF2157	PF09925.9	gi|336253489|ref|YP_004596596.1|	-	8.5	6.2	11.5	0.37	10.6	0.6	2.3	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
Ribosomal_S24e	PF01282.19	gi|336253490|ref|YP_004596597.1|	-	4.8e-25	87.3	0.2	5.9e-25	87.0	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Ribosomal_S27	PF01599.19	gi|336253491|ref|YP_004596598.1|	-	1e-09	38.4	5.8	1.1e-09	38.3	5.5	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S27a
RNA_POL_M_15KD	PF02150.16	gi|336253491|ref|YP_004596598.1|	-	0.009	15.9	1.3	0.014	15.3	1.3	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.6	gi|336253491|ref|YP_004596598.1|	-	0.063	13.2	5.0	1.8	8.5	0.2	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
Peptidase_M22	PF00814.25	gi|336253492|ref|YP_004596599.1|	-	2.1e-76	257.2	0.0	2.8e-76	256.8	0.0	1.1	1	0	0	1	1	1	1	Glycoprotease	family
Kdo	PF06293.14	gi|336253492|ref|YP_004596599.1|	-	0.0014	18.1	0.1	0.0026	17.2	0.1	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|336253492|ref|YP_004596599.1|	-	0.0029	17.6	10.0	0.013	15.4	10.0	2.1	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|336253492|ref|YP_004596599.1|	-	0.15	11.4	0.0	0.22	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	kinase	domain
DUF2071	PF09844.9	gi|336253493|ref|YP_004596600.1|	-	1.7e-71	240.2	0.2	1.9e-71	240.0	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.11	gi|336253493|ref|YP_004596600.1|	-	0.0049	16.4	0.1	0.0067	16.0	0.1	1.3	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
GFO_IDH_MocA	PF01408.22	gi|336253495|ref|YP_004596602.1|	-	1.2e-24	87.4	0.2	2.4e-24	86.5	0.2	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336253495|ref|YP_004596602.1|	-	1.5e-07	31.5	0.0	2.5e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_2	PF03446.15	gi|336253495|ref|YP_004596602.1|	-	2.1e-05	24.8	0.4	9.3e-05	22.6	0.2	2.2	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|336253495|ref|YP_004596602.1|	-	0.001	18.7	0.3	0.0021	17.7	0.0	1.6	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|336253495|ref|YP_004596602.1|	-	0.001	19.6	0.1	0.0027	18.2	0.1	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|336253495|ref|YP_004596602.1|	-	0.0041	16.5	0.1	0.0091	15.4	0.1	1.5	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|336253495|ref|YP_004596602.1|	-	0.078	12.9	0.1	0.13	12.1	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336253495|ref|YP_004596602.1|	-	0.12	11.9	0.2	0.45	10.1	0.1	2.0	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Ham1p_like	PF01725.16	gi|336253496|ref|YP_004596603.1|	-	2.9e-56	190.4	0.0	3.2e-56	190.2	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
EBV-NA3	PF05009.12	gi|336253497|ref|YP_004596604.1|	-	0.014	15.0	0.6	0.019	14.5	0.6	1.2	1	0	0	1	1	1	0	Epstein-Barr	virus	nuclear	antigen	3	(EBNA-3)
SBP_bac_8	PF13416.6	gi|336253498|ref|YP_004596605.1|	-	2.2e-22	80.2	0.3	2.9e-22	79.8	0.3	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336253498|ref|YP_004596605.1|	-	2.4e-13	50.7	6.0	3.3e-13	50.3	6.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336253498|ref|YP_004596605.1|	-	0.00012	21.7	4.1	0.00027	20.7	4.1	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SnoaL_2	PF12680.7	gi|336253498|ref|YP_004596605.1|	-	0.0004	21.0	1.7	0.033	14.8	0.1	3.2	3	0	0	3	3	3	1	SnoaL-like	domain
MutS_V	PF00488.21	gi|336253499|ref|YP_004596606.1|	-	2.4e-86	288.6	0.1	7.3e-86	287.0	0.0	1.9	2	0	0	2	2	2	1	MutS	domain	V
MutS_III	PF05192.18	gi|336253499|ref|YP_004596606.1|	-	3.4e-36	125.3	5.6	5.9e-36	124.5	5.6	1.4	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|336253499|ref|YP_004596606.1|	-	4.5e-28	97.7	0.0	1.5e-27	96.1	0.0	1.9	2	0	0	2	2	2	1	MutS	domain	I
MutS_IV	PF05190.18	gi|336253499|ref|YP_004596606.1|	-	6.1e-26	90.6	1.9	1.4e-25	89.5	1.9	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|336253499|ref|YP_004596606.1|	-	2.8e-20	73.0	0.0	1.7e-19	70.5	0.0	2.4	3	0	0	3	3	3	1	MutS	domain	II
AAA_23	PF13476.6	gi|336253499|ref|YP_004596606.1|	-	0.0042	17.6	0.4	1.4	9.3	0.0	2.9	3	0	0	3	3	3	1	AAA	domain
AAA_14	PF13173.6	gi|336253499|ref|YP_004596606.1|	-	0.1	12.6	0.0	0.47	10.5	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336253499|ref|YP_004596606.1|	-	0.13	12.0	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
APG6_N	PF17675.1	gi|336253499|ref|YP_004596606.1|	-	0.91	10.1	12.0	0.062	13.8	6.0	2.1	2	0	0	2	2	2	0	Apg6	coiled-coil	region
MCPsignal	PF00015.21	gi|336253500|ref|YP_004596607.1|	-	1.2e-46	158.7	48.4	5.6e-44	150.0	24.7	3.4	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Protoglobin	PF11563.8	gi|336253500|ref|YP_004596607.1|	-	4.4e-09	36.4	0.1	1.6e-08	34.6	0.0	2.1	2	0	0	2	2	1	1	Protoglobin
DUF948	PF06103.11	gi|336253500|ref|YP_004596607.1|	-	4.4e-07	30.1	35.0	0.013	15.7	3.4	5.1	3	1	1	4	4	4	4	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|336253500|ref|YP_004596607.1|	-	6.2e-06	26.3	29.3	0.0064	16.5	1.9	4.4	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|336253500|ref|YP_004596607.1|	-	5.5e-05	23.2	35.0	0.061	13.3	4.3	4.9	2	2	3	5	5	5	4	Laminin	Domain	II
DASH_Dad2	PF08654.10	gi|336253500|ref|YP_004596607.1|	-	0.00021	21.6	21.2	0.63	10.5	4.0	5.2	1	1	3	5	5	5	2	DASH	complex	subunit	Dad2
IFT57	PF10498.9	gi|336253500|ref|YP_004596607.1|	-	0.0042	16.1	3.9	0.0042	16.1	3.9	3.2	1	1	0	2	2	2	1	Intra-flagellar	transport	protein	57
KxDL	PF10241.9	gi|336253500|ref|YP_004596607.1|	-	0.0065	16.7	7.0	14	6.0	0.1	5.0	4	1	1	5	5	5	0	Uncharacterized	conserved	protein
Spc7	PF08317.11	gi|336253500|ref|YP_004596607.1|	-	0.0071	15.3	31.5	0.015	14.2	6.0	3.1	3	0	0	3	3	3	2	Spc7	kinetochore	protein
BLOC1_2	PF10046.9	gi|336253500|ref|YP_004596607.1|	-	0.011	16.0	29.0	0.35	11.2	0.1	5.5	2	2	3	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Syntaxin_2	PF14523.6	gi|336253500|ref|YP_004596607.1|	-	0.015	15.7	9.0	4	7.9	0.2	4.6	1	1	4	5	5	5	0	Syntaxin-like	protein
STAT_alpha	PF01017.20	gi|336253500|ref|YP_004596607.1|	-	0.015	15.2	6.5	1.8	8.5	0.2	3.4	3	0	0	3	3	3	0	STAT	protein,	all-alpha	domain
CorA	PF01544.18	gi|336253500|ref|YP_004596607.1|	-	0.016	14.5	17.3	0.13	11.6	3.1	3.3	3	1	0	3	3	3	0	CorA-like	Mg2+	transporter	protein
DUF745	PF05335.13	gi|336253500|ref|YP_004596607.1|	-	0.028	14.1	26.7	0.091	12.5	4.9	3.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF745)
RmuC	PF02646.16	gi|336253500|ref|YP_004596607.1|	-	0.031	13.4	17.9	3.5	6.7	0.1	4.5	1	1	3	4	4	4	0	RmuC	family
Mod_r	PF07200.13	gi|336253500|ref|YP_004596607.1|	-	0.032	14.3	0.1	0.032	14.3	0.1	4.7	2	1	1	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
COG2	PF06148.11	gi|336253500|ref|YP_004596607.1|	-	0.049	13.7	26.1	1	9.4	2.2	5.5	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RecG_N	PF17190.4	gi|336253500|ref|YP_004596607.1|	-	0.055	14.2	8.8	0.72	10.6	0.1	4.7	3	2	1	5	5	4	0	RecG	N-terminal	helical	domain
Yuri_gagarin	PF15934.5	gi|336253500|ref|YP_004596607.1|	-	0.078	12.8	6.5	0.2	11.5	0.2	2.9	1	1	2	3	3	3	0	Yuri	gagarin
SHOCT	PF09851.9	gi|336253500|ref|YP_004596607.1|	-	0.091	12.5	0.6	0.31	10.8	0.6	1.9	1	0	0	1	1	1	0	Short	C-terminal	domain
DUF4200	PF13863.6	gi|336253500|ref|YP_004596607.1|	-	0.11	12.9	18.8	0.079	13.4	0.9	4.3	2	2	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
DASH_Dam1	PF08653.10	gi|336253500|ref|YP_004596607.1|	-	0.14	12.0	7.8	70	3.3	0.0	6.0	6	1	1	7	7	6	0	DASH	complex	subunit	Dam1
Syntaxin-6_N	PF09177.11	gi|336253500|ref|YP_004596607.1|	-	0.26	11.9	27.9	0.52	10.9	1.6	5.0	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
ISG65-75	PF11727.8	gi|336253500|ref|YP_004596607.1|	-	0.26	10.5	27.1	1.5	8.0	8.4	2.9	1	1	2	3	3	3	0	Invariant	surface	glycoprotein
TMPIT	PF07851.13	gi|336253500|ref|YP_004596607.1|	-	0.29	10.4	11.3	0.78	8.9	1.1	2.8	2	2	0	2	2	2	0	TMPIT-like	protein
Sec5	PF15469.6	gi|336253500|ref|YP_004596607.1|	-	0.3	10.9	5.4	1.4	8.7	3.3	2.8	1	1	0	1	1	1	0	Exocyst	complex	component	Sec5
DUF489	PF04356.12	gi|336253500|ref|YP_004596607.1|	-	0.31	11.0	4.9	5.1	7.1	1.9	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
ATG16	PF08614.11	gi|336253500|ref|YP_004596607.1|	-	0.46	10.7	27.9	0.54	10.5	8.6	3.6	2	1	0	3	3	3	0	Autophagy	protein	16	(ATG16)
Bacillus_HBL	PF05791.11	gi|336253500|ref|YP_004596607.1|	-	0.48	10.2	17.6	3.6	7.4	0.6	4.9	2	1	3	5	5	5	0	Bacillus	haemolytic	enterotoxin	(HBL)
CREPT	PF16566.5	gi|336253500|ref|YP_004596607.1|	-	0.75	10.0	12.8	0.89	9.7	0.2	3.8	1	1	0	3	3	3	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Lipoprotein_20	PF13942.6	gi|336253500|ref|YP_004596607.1|	-	0.76	9.7	5.0	1.5	8.7	0.1	3.0	3	0	0	3	3	3	0	YfhG	lipoprotein
Fib_alpha	PF08702.10	gi|336253500|ref|YP_004596607.1|	-	0.77	9.9	17.4	2.1	8.5	0.5	4.1	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
ApoO	PF09769.9	gi|336253500|ref|YP_004596607.1|	-	0.81	9.7	6.4	14	5.6	0.2	4.0	2	2	2	4	4	4	0	Apolipoprotein	O
CheZ	PF04344.13	gi|336253500|ref|YP_004596607.1|	-	0.83	9.5	26.0	12	5.7	12.7	3.9	1	1	2	3	3	3	0	Chemotaxis	phosphatase,	CheZ
Fmp27_WPPW	PF10359.9	gi|336253500|ref|YP_004596607.1|	-	0.86	8.4	17.7	1	8.2	2.1	3.7	1	1	2	4	4	4	0	RNA	pol	II	promoter	Fmp27	protein	domain
Sec34	PF04136.15	gi|336253500|ref|YP_004596607.1|	-	0.9	9.4	15.5	20	5.0	0.8	5.0	2	2	2	5	5	5	0	Sec34-like	family
HisKA	PF00512.25	gi|336253500|ref|YP_004596607.1|	-	0.93	9.6	15.2	3.4	7.8	0.3	5.7	3	2	0	4	4	4	0	His	Kinase	A	(phospho-acceptor)	domain
FlgN	PF05130.12	gi|336253500|ref|YP_004596607.1|	-	0.94	10.0	20.2	3.8	8.0	3.2	3.6	1	1	3	4	4	4	0	FlgN	protein
Allexi_40kDa	PF05549.11	gi|336253500|ref|YP_004596607.1|	-	0.97	8.9	11.6	0.54	9.7	1.1	3.3	1	1	1	3	3	3	0	Allexivirus	40kDa	protein
Atg14	PF10186.9	gi|336253500|ref|YP_004596607.1|	-	1.7	7.6	5.8	2.6	7.0	0.9	2.3	1	1	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
APG17	PF04108.12	gi|336253500|ref|YP_004596607.1|	-	2	7.4	28.4	0.27	10.3	4.3	3.0	1	1	0	2	2	2	0	Autophagy	protein	Apg17
HMMR_N	PF15905.5	gi|336253500|ref|YP_004596607.1|	-	3.4	7.0	21.3	3.7	6.9	5.1	2.4	2	1	0	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
Prominin	PF05478.11	gi|336253500|ref|YP_004596607.1|	-	3.8	5.3	13.7	1.6	6.6	1.1	2.5	1	1	2	3	3	3	0	Prominin
TPR_MLP1_2	PF07926.12	gi|336253500|ref|YP_004596607.1|	-	4.9	7.2	31.7	3.5	7.7	13.7	3.8	2	2	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
LXG	PF04740.12	gi|336253500|ref|YP_004596607.1|	-	5.9	6.5	24.4	2.5	7.8	2.5	4.3	2	1	3	5	5	5	0	LXG	domain	of	WXG	superfamily
WXG100	PF06013.12	gi|336253500|ref|YP_004596607.1|	-	5.9	7.2	26.9	5.9	7.2	3.3	6.0	1	1	5	7	7	7	0	Proteins	of	100	residues	with	WXG
Nup88	PF10168.9	gi|336253500|ref|YP_004596607.1|	-	6.4	4.5	17.1	1.2	6.9	3.7	2.4	1	1	2	3	3	3	0	Nuclear	pore	component
Cytochrom_B562	PF07361.11	gi|336253500|ref|YP_004596607.1|	-	7.8	7.2	21.3	0.16	12.6	2.3	4.2	3	1	1	4	4	4	0	Cytochrome	b562
AAA_13	PF13166.6	gi|336253500|ref|YP_004596607.1|	-	8.4	4.9	24.9	1.6	7.3	7.2	2.3	1	1	0	2	2	2	0	AAA	domain
Dna2	PF08696.11	gi|336253500|ref|YP_004596607.1|	-	8.7	6.1	9.0	0.94	9.2	0.5	2.8	2	1	0	2	2	2	0	DNA	replication	factor	Dna2
SHE3	PF17078.5	gi|336253500|ref|YP_004596607.1|	-	8.8	6.0	12.9	0.37	10.5	1.2	3.0	1	1	3	4	4	4	0	SWI5-dependent	HO	expression	protein	3
tRNA_bind	PF01588.20	gi|336253501|ref|YP_004596608.1|	-	4.8e-14	52.3	0.0	5.8e-14	52.0	0.0	1.0	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
Bac_luciferase	PF00296.20	gi|336253502|ref|YP_004596609.1|	-	5.1e-61	206.8	4.4	9.8e-61	205.9	4.4	1.4	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
PEP_mutase	PF13714.6	gi|336253502|ref|YP_004596609.1|	-	0.058	12.9	0.1	0.13	11.6	0.0	1.6	2	0	0	2	2	2	0	Phosphoenolpyruvate	phosphomutase
Phos_pyr_kin	PF08543.12	gi|336253503|ref|YP_004596610.1|	-	8.9e-88	293.8	2.8	8.9e-88	293.8	2.8	1.7	2	0	0	2	2	2	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|336253503|ref|YP_004596610.1|	-	4.3e-56	189.1	1.2	8.7e-56	188.1	1.2	1.5	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|336253503|ref|YP_004596610.1|	-	1.2e-10	41.2	1.7	2.3e-10	40.3	1.7	1.4	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.17	gi|336253503|ref|YP_004596610.1|	-	0.00092	18.8	3.4	0.0016	18.0	3.4	1.3	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.15	gi|336253503|ref|YP_004596610.1|	-	0.078	12.4	2.3	1.2	8.5	2.3	2.3	1	1	0	1	1	1	0	Hydroxyethylthiazole	kinase	family
AIRS_C	PF02769.22	gi|336253504|ref|YP_004596611.1|	-	1.4e-24	87.0	1.6	1.9e-24	86.5	1.6	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|336253504|ref|YP_004596611.1|	-	1.5e-08	35.2	1.3	6.7e-08	33.1	0.1	2.2	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
YL1_C	PF08265.11	gi|336253504|ref|YP_004596611.1|	-	0.16	11.8	0.0	0.28	11.0	0.0	1.4	1	0	0	1	1	1	0	YL1	nuclear	protein	C-terminal	domain
MFS_MOT1	PF16983.5	gi|336253505|ref|YP_004596612.1|	-	1.3e-41	141.5	32.0	3.4e-24	85.4	12.5	3.6	4	0	0	4	4	4	2	Molybdate	transporter	of	MFS	superfamily
PorA	PF11271.8	gi|336253505|ref|YP_004596612.1|	-	1.3	8.3	9.6	0.88	8.8	4.2	2.9	2	0	0	2	2	2	0	Porin	PorA
DHDPS	PF00701.22	gi|336253506|ref|YP_004596613.1|	-	3.9e-66	222.7	0.0	4.9e-66	222.4	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
PRA-PH	PF01503.17	gi|336253506|ref|YP_004596613.1|	-	0.19	12.2	1.9	4.3	7.8	0.0	2.7	3	0	0	3	3	3	0	Phosphoribosyl-ATP	pyrophosphohydrolase
MutL_C	PF08676.11	gi|336253507|ref|YP_004596614.1|	-	1.2e-35	122.5	0.0	1.8e-35	121.9	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.19	gi|336253507|ref|YP_004596614.1|	-	5e-33	113.3	0.0	9.2e-33	112.4	0.0	1.4	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|336253507|ref|YP_004596614.1|	-	5e-13	49.0	0.0	1.1e-12	48.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|336253507|ref|YP_004596614.1|	-	1.8e-05	25.2	0.0	3.5e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Macoilin	PF09726.9	gi|336253507|ref|YP_004596614.1|	-	2.5	6.5	5.0	3.7	6.0	5.0	1.2	1	0	0	1	1	1	0	Macoilin	family
SSF	PF00474.17	gi|336253509|ref|YP_004596616.1|	-	1.3e-42	146.1	24.2	1.9e-42	145.5	24.2	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF3311	PF11755.8	gi|336253510|ref|YP_004596617.1|	-	8e-15	54.5	13.6	9.3e-15	54.3	13.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
TRAP-gamma	PF07074.12	gi|336253510|ref|YP_004596617.1|	-	0.075	12.6	0.3	0.093	12.3	0.3	1.1	1	0	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
HTH_20	PF12840.7	gi|336253511|ref|YP_004596618.1|	-	2.3e-15	56.4	0.3	5e-15	55.3	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336253511|ref|YP_004596618.1|	-	2e-05	24.1	0.0	3.6e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336253511|ref|YP_004596618.1|	-	0.00014	21.6	0.0	0.00029	20.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|336253511|ref|YP_004596618.1|	-	0.0006	19.6	0.0	0.00099	18.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
FaeA	PF04703.12	gi|336253511|ref|YP_004596618.1|	-	0.0014	19.0	0.0	0.0026	18.1	0.0	1.3	1	0	0	1	1	1	1	FaeA-like	protein
TrmB	PF01978.19	gi|336253511|ref|YP_004596618.1|	-	0.0048	16.8	0.1	0.014	15.2	0.0	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2513	PF10711.9	gi|336253511|ref|YP_004596618.1|	-	0.052	13.8	0.0	0.083	13.2	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_12	PF08461.10	gi|336253511|ref|YP_004596618.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
ArsR	PF09824.9	gi|336253511|ref|YP_004596618.1|	-	0.2	11.2	0.0	0.3	10.7	0.0	1.2	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
Toprim_4	PF13662.6	gi|336253512|ref|YP_004596619.1|	-	4.5e-12	46.3	0.4	2e-11	44.2	0.3	2.2	1	1	1	2	2	2	1	Toprim	domain
Toprim_2	PF13155.6	gi|336253512|ref|YP_004596619.1|	-	2.3e-06	28.0	0.0	7.3e-06	26.3	0.0	2.0	1	0	0	1	1	1	1	Toprim-like
Toprim	PF01751.22	gi|336253512|ref|YP_004596619.1|	-	0.03	14.5	0.2	0.16	12.2	0.2	2.2	1	1	0	1	1	1	0	Toprim	domain
Trypan_PARP	PF05887.11	gi|336253513|ref|YP_004596620.1|	-	0.15	12.1	6.1	0.22	11.5	6.1	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF92	PF01940.16	gi|336253515|ref|YP_004596622.1|	-	2.8e-50	170.9	16.6	2.8e-50	170.9	16.6	3.1	2	2	0	2	2	2	1	Integral	membrane	protein	DUF92
Prenyltransf	PF01255.19	gi|336253516|ref|YP_004596623.1|	-	9.3e-24	84.2	0.0	2.5e-23	82.8	0.0	1.6	2	0	0	2	2	2	1	Putative	undecaprenyl	diphosphate	synthase
Prenyltransf	PF01255.19	gi|336253518|ref|YP_004596625.1|	-	6.5e-65	218.8	0.0	8.1e-65	218.5	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Nif11	PF07862.11	gi|336253519|ref|YP_004596626.1|	-	0.096	13.0	0.1	0.26	11.6	0.1	1.7	1	0	0	1	1	1	0	Nif11	domain
TFIIB	PF00382.19	gi|336253520|ref|YP_004596627.1|	-	2e-32	111.1	0.9	2.7e-15	56.2	0.0	2.5	3	0	0	3	3	3	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336253520|ref|YP_004596627.1|	-	2e-13	49.6	0.3	3.4e-13	48.9	0.3	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|336253520|ref|YP_004596627.1|	-	0.00031	20.8	0.0	0.0063	16.6	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|336253520|ref|YP_004596627.1|	-	0.0029	17.5	1.6	0.0076	16.1	0.8	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
Cyclin_N	PF00134.23	gi|336253520|ref|YP_004596627.1|	-	0.034	13.9	0.0	0.1	12.3	0.0	1.8	1	1	1	2	2	2	0	Cyclin,	N-terminal	domain
HTH_11	PF08279.12	gi|336253520|ref|YP_004596627.1|	-	0.066	13.2	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
TFIIB_C_1	PF18542.1	gi|336253520|ref|YP_004596627.1|	-	0.14	12.2	0.7	15	5.7	0.1	2.5	2	0	0	2	2	2	0	Transcription	factor	IIB	C-terminal	module	1
zinc_ribbon_9	PF14369.6	gi|336253520|ref|YP_004596627.1|	-	0.21	11.9	0.3	0.21	11.9	0.3	2.0	1	1	1	2	2	2	0	zinc-ribbon
zf_UBZ	PF18439.1	gi|336253520|ref|YP_004596627.1|	-	3.1	7.5	5.0	8.1	6.1	1.3	2.7	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
NAD_binding_7	PF13241.6	gi|336253521|ref|YP_004596628.1|	-	7.6e-24	84.1	0.0	1.5e-23	83.2	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Sirohm_synth_M	PF14824.6	gi|336253521|ref|YP_004596628.1|	-	8.6e-07	28.3	0.0	2.1e-06	27.1	0.0	1.7	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
CysG_dimeriser	PF10414.9	gi|336253521|ref|YP_004596628.1|	-	0.028	14.1	0.6	0.16	11.7	0.0	2.3	2	0	0	2	2	2	0	Sirohaem	synthase	dimerisation	region
Peripla_BP_4	PF13407.6	gi|336253521|ref|YP_004596628.1|	-	0.12	12.0	0.1	0.16	11.5	0.1	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
GlutR_N	PF05201.15	gi|336253522|ref|YP_004596629.1|	-	2.8e-34	118.0	0.0	6.2e-34	116.9	0.0	1.5	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|336253522|ref|YP_004596629.1|	-	3e-34	118.1	0.9	5e-34	117.3	0.2	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|336253522|ref|YP_004596629.1|	-	7.3e-22	77.6	1.6	1.6e-21	76.6	1.6	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.17	gi|336253522|ref|YP_004596629.1|	-	1.3e-06	28.9	0.2	5.8e-06	26.8	0.2	2.2	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|336253522|ref|YP_004596629.1|	-	3.9e-05	23.9	0.4	0.00016	21.8	0.1	2.0	1	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|336253522|ref|YP_004596629.1|	-	0.00014	21.9	0.2	0.00032	20.8	0.2	1.5	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
OCD_Mu_crystall	PF02423.15	gi|336253522|ref|YP_004596629.1|	-	0.00023	20.2	0.6	0.00039	19.4	0.6	1.3	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Sacchrp_dh_NADP	PF03435.18	gi|336253522|ref|YP_004596629.1|	-	0.00026	21.2	1.5	0.0023	18.2	0.2	2.8	3	1	0	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_7	PF13241.6	gi|336253522|ref|YP_004596629.1|	-	0.0003	21.2	2.0	0.00065	20.1	0.3	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Glu_dehyd_C	PF16912.5	gi|336253522|ref|YP_004596629.1|	-	0.00034	20.2	1.0	0.00034	20.2	1.0	2.8	4	0	0	4	4	4	1	Glucose	dehydrogenase	C-terminus
2-Hacid_dh_C	PF02826.19	gi|336253522|ref|YP_004596629.1|	-	0.001	18.5	0.1	0.002	17.5	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.21	gi|336253522|ref|YP_004596629.1|	-	0.016	14.5	0.6	0.036	13.4	0.6	1.5	1	0	0	1	1	1	0	ThiF	family
zf-C4H2	PF10146.9	gi|336253522|ref|YP_004596629.1|	-	0.078	13.3	0.2	0.13	12.5	0.2	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
ApbA	PF02558.16	gi|336253522|ref|YP_004596629.1|	-	0.093	12.4	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|336253522|ref|YP_004596629.1|	-	0.16	12.2	2.8	0.19	12.0	0.7	2.3	2	0	0	2	2	2	0	TrkA-N	domain
SAM_Exu	PF18609.1	gi|336253522|ref|YP_004596629.1|	-	0.3	11.2	1.3	1.3	9.1	1.6	2.0	2	0	0	2	2	1	0	Exuperantia	SAM-like	domain
Pterin_4a	PF01329.19	gi|336253523|ref|YP_004596630.1|	-	8.5e-24	83.5	0.0	1e-23	83.3	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
HAD_2	PF13419.6	gi|336253525|ref|YP_004596632.1|	-	4.3e-10	40.0	0.0	1e-09	38.7	0.0	1.6	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336253525|ref|YP_004596632.1|	-	5.9e-08	33.3	0.1	1.1e-06	29.2	0.1	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336253525|ref|YP_004596632.1|	-	2.9e-05	24.6	0.7	4.4e-05	24.0	0.7	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
DUF86	PF01934.17	gi|336253525|ref|YP_004596632.1|	-	0.015	15.1	0.0	0.024	14.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF86
HTH_10	PF04967.12	gi|336253526|ref|YP_004596633.1|	-	4.4e-18	64.8	0.1	7.3e-18	64.1	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253526|ref|YP_004596633.1|	-	8.4e-07	29.0	4.2	1.3e-06	28.3	4.2	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|336253526|ref|YP_004596633.1|	-	0.0005	19.6	0.0	0.0016	17.9	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336253526|ref|YP_004596633.1|	-	0.00096	19.0	0.1	0.0028	17.5	0.1	1.9	1	0	0	1	1	1	1	MarR	family
HTH_psq	PF05225.16	gi|336253526|ref|YP_004596633.1|	-	0.00098	18.8	0.2	0.0028	17.4	0.2	1.8	1	1	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_AsnC-type	PF13404.6	gi|336253526|ref|YP_004596633.1|	-	0.0011	18.8	0.3	0.0063	16.3	0.2	2.2	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_AraC	PF00165.23	gi|336253526|ref|YP_004596633.1|	-	0.0018	18.3	0.0	0.016	15.3	0.0	2.4	3	0	0	3	3	3	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
GPP34	PF05719.11	gi|336253526|ref|YP_004596633.1|	-	0.0035	17.4	1.4	0.0042	17.2	1.4	1.3	1	1	0	1	1	1	1	Golgi	phosphoprotein	3	(GPP34)
Sigma70_r4	PF04545.16	gi|336253526|ref|YP_004596633.1|	-	0.0098	15.4	0.5	0.023	14.2	0.5	1.6	1	1	0	1	1	1	1	Sigma-70,	region	4
Phage_CI_repr	PF07022.13	gi|336253526|ref|YP_004596633.1|	-	0.02	15.0	0.0	0.081	13.0	0.0	1.9	2	0	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_3	PF01381.22	gi|336253526|ref|YP_004596633.1|	-	0.02	14.9	0.0	0.046	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
Malate_DH	PF12434.8	gi|336253526|ref|YP_004596633.1|	-	0.032	14.3	0.4	0.099	12.7	0.4	1.8	1	0	0	1	1	1	0	Malate	dehydrogenase	enzyme
UPF0122	PF04297.14	gi|336253526|ref|YP_004596633.1|	-	0.04	14.2	0.0	0.064	13.5	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
TetR_N	PF00440.23	gi|336253526|ref|YP_004596633.1|	-	0.04	13.7	0.1	0.11	12.3	0.1	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4_2	PF08281.12	gi|336253526|ref|YP_004596633.1|	-	0.055	13.1	0.4	0.65	9.7	0.4	2.2	1	1	0	1	1	1	0	Sigma-70,	region	4
GntR	PF00392.21	gi|336253526|ref|YP_004596633.1|	-	0.13	12.0	0.0	1.2	8.8	0.1	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_22	PF13309.6	gi|336253526|ref|YP_004596633.1|	-	0.14	12.3	0.0	0.28	11.3	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MoeA_N	PF03453.17	gi|336253527|ref|YP_004596634.1|	-	1.2e-38	132.3	5.0	2.4e-38	131.4	5.0	1.5	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
PBP_like	PF12727.7	gi|336253527|ref|YP_004596634.1|	-	6.8e-24	84.1	0.3	5.3e-23	81.1	0.0	2.4	2	1	0	2	2	2	1	PBP	superfamily	domain
MoCF_biosynth	PF00994.24	gi|336253527|ref|YP_004596634.1|	-	9.8e-24	83.7	0.0	1.7e-23	82.9	0.0	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|336253527|ref|YP_004596634.1|	-	1.9e-16	60.0	0.0	7.7e-16	58.0	0.0	2.1	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.6	gi|336253527|ref|YP_004596634.1|	-	0.071	12.8	0.0	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
Phosphonate-bd	PF12974.7	gi|336253527|ref|YP_004596634.1|	-	0.083	12.5	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
MatE	PF01554.18	gi|336253528|ref|YP_004596635.1|	-	2.3e-49	167.2	20.3	2e-25	89.3	5.3	2.7	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|336253528|ref|YP_004596635.1|	-	3.1e-09	37.0	9.6	3.1e-09	37.0	9.6	4.4	4	2	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336253528|ref|YP_004596635.1|	-	1.3e-08	33.9	2.4	1.3e-08	33.9	2.4	2.1	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
Lumazine_bd_2	PF12893.7	gi|336253529|ref|YP_004596636.1|	-	0.19	12.4	0.0	0.25	12.0	0.0	1.2	1	0	0	1	1	1	0	Putative	lumazine-binding
TrkA_N	PF02254.18	gi|336253530|ref|YP_004596637.1|	-	3.4e-34	117.6	9.4	1e-16	61.2	2.3	2.4	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|336253530|ref|YP_004596637.1|	-	3e-15	55.8	7.1	2.3e-07	30.5	0.6	3.8	4	1	0	4	4	4	2	TrkA-C	domain
Ion_trans_2	PF07885.16	gi|336253530|ref|YP_004596637.1|	-	0.01	15.8	3.4	0.018	15.0	3.4	1.4	1	0	0	1	1	1	0	Ion	channel
MoeA_N	PF03453.17	gi|336253531|ref|YP_004596638.1|	-	8.6e-41	139.3	5.5	1.4e-40	138.6	5.5	1.4	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|336253531|ref|YP_004596638.1|	-	1.8e-24	86.1	0.1	2.9e-24	85.4	0.1	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|336253531|ref|YP_004596638.1|	-	8e-18	64.4	3.1	6.3e-17	61.5	0.0	3.5	3	1	0	3	3	3	1	MoeA	C-terminal	region	(domain	IV)
GIDE	PF12483.8	gi|336253532|ref|YP_004596639.1|	-	4.3e-11	42.5	0.0	2.4e-08	33.6	0.0	3.0	2	1	0	2	2	2	1	E3	Ubiquitin	ligase
IncE	PF17627.2	gi|336253532|ref|YP_004596639.1|	-	0.13	12.2	5.2	2.7	8.0	0.1	2.3	2	0	0	2	2	2	0	Inclusion	membrane	protein	E
HSP20	PF00011.21	gi|336253533|ref|YP_004596640.1|	-	8e-13	48.4	0.0	1.1e-12	48.0	0.0	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|336253533|ref|YP_004596640.1|	-	0.0002	20.8	0.2	0.00036	20.0	0.2	1.5	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|336253533|ref|YP_004596640.1|	-	0.065	13.3	0.6	0.065	13.3	0.6	2.3	2	1	0	2	2	2	0	GvpH
Trypan_PARP	PF05887.11	gi|336253533|ref|YP_004596640.1|	-	0.79	9.7	8.3	1.1	9.3	8.3	1.2	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
ABC1	PF03109.16	gi|336253534|ref|YP_004596641.1|	-	6.8e-27	94.0	0.0	1.8e-17	63.6	0.0	3.0	3	0	0	3	3	3	2	ABC1	family
APH	PF01636.23	gi|336253534|ref|YP_004596641.1|	-	0.00015	21.8	0.1	0.0019	18.2	0.0	2.5	2	1	0	2	2	2	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|336253534|ref|YP_004596641.1|	-	0.019	14.4	0.0	0.03	13.7	0.0	1.3	1	0	0	1	1	1	0	Protein	kinase	domain
MR_MLE_C	PF13378.6	gi|336253536|ref|YP_004596643.1|	-	0.0033	17.0	0.0	0.0075	15.9	0.0	1.6	1	1	0	1	1	1	1	Enolase	C-terminal	domain-like
EFP_N	PF08207.12	gi|336253537|ref|YP_004596644.1|	-	0.0001	22.3	0.0	0.011	15.7	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.20	gi|336253537|ref|YP_004596644.1|	-	0.028	14.4	0.4	0.051	13.6	0.4	1.5	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	OB	domain
Arginase	PF00491.21	gi|336253538|ref|YP_004596645.1|	-	1.8e-54	185.2	0.1	2e-54	185.0	0.1	1.0	1	0	0	1	1	1	1	Arginase	family
FmdA_AmdA	PF03069.15	gi|336253540|ref|YP_004596647.1|	-	4.9e-35	121.1	1.3	1.3e-16	60.5	0.6	2.8	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
NIF3	PF01784.18	gi|336253541|ref|YP_004596648.1|	-	5.2e-52	176.9	0.0	5.9e-52	176.7	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
Glyoxalase_6	PF18029.1	gi|336253541|ref|YP_004596648.1|	-	0.073	13.9	2.1	0.092	13.5	0.3	1.9	2	0	0	2	2	2	0	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|336253541|ref|YP_004596648.1|	-	0.12	12.6	1.0	0.55	10.5	0.1	2.2	2	1	1	3	3	3	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
CDC45	PF02724.14	gi|336253542|ref|YP_004596649.1|	-	0.46	8.7	5.8	0.56	8.4	5.8	1.1	1	0	0	1	1	1	0	CDC45-like	protein
NARP1	PF12569.8	gi|336253542|ref|YP_004596649.1|	-	0.46	9.3	5.5	0.62	8.9	5.5	1.1	1	0	0	1	1	1	0	NMDA	receptor-regulated	protein	1
Zip	PF02535.22	gi|336253542|ref|YP_004596649.1|	-	1.2	8.3	3.6	1.6	7.9	3.6	1.2	1	0	0	1	1	1	0	ZIP	Zinc	transporter
DS	PF01916.17	gi|336253543|ref|YP_004596650.1|	-	2.2e-99	332.4	0.0	2.6e-99	332.1	0.0	1.1	1	0	0	1	1	1	1	Deoxyhypusine	synthase
DHDPS	PF00701.22	gi|336253543|ref|YP_004596650.1|	-	0.14	10.8	0.0	7	5.3	0.0	2.1	2	0	0	2	2	2	0	Dihydrodipicolinate	synthetase	family
PP2C_C	PF07830.13	gi|336253544|ref|YP_004596651.1|	-	0.055	13.9	1.9	0.49	10.9	0.7	2.1	1	1	1	2	2	2	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
DUF4049	PF13258.6	gi|336253544|ref|YP_004596651.1|	-	0.082	12.0	0.0	0.097	11.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4049)
PRA-PH	PF01503.17	gi|336253544|ref|YP_004596651.1|	-	0.16	12.4	3.4	0.17	12.3	2.6	1.6	1	1	0	1	1	1	0	Phosphoribosyl-ATP	pyrophosphohydrolase
Lactamase_B_2	PF12706.7	gi|336253546|ref|YP_004596653.1|	-	3e-18	66.1	0.2	4.2e-18	65.6	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336253546|ref|YP_004596653.1|	-	3e-11	43.5	0.0	1.2e-10	41.5	0.0	2.0	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336253546|ref|YP_004596653.1|	-	0.0012	18.9	7.8	0.0013	18.8	3.2	2.6	1	1	1	2	2	2	1	Metallo-beta-lactamase	superfamily
Pyr_redox_2	PF07992.14	gi|336253547|ref|YP_004596654.1|	-	3.6e-28	98.6	0.2	4.8e-28	98.2	0.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336253547|ref|YP_004596654.1|	-	1.4e-12	47.5	0.0	6.4e-08	32.2	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253547|ref|YP_004596654.1|	-	9.2e-06	25.8	0.2	2.4e-05	24.5	0.2	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336253547|ref|YP_004596654.1|	-	3.4e-05	23.6	6.4	0.00037	20.2	6.4	2.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336253547|ref|YP_004596654.1|	-	3.6e-05	23.0	5.0	4.3e-05	22.8	0.3	2.5	2	1	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|336253547|ref|YP_004596654.1|	-	0.00011	21.5	0.2	0.00018	20.7	0.2	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|336253547|ref|YP_004596654.1|	-	0.00014	20.7	0.0	0.00047	19.0	0.1	1.7	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|336253547|ref|YP_004596654.1|	-	0.00016	21.2	0.5	0.00026	20.5	0.5	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336253547|ref|YP_004596654.1|	-	0.00035	19.9	0.3	0.00071	18.9	0.1	1.6	2	0	0	2	2	2	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|336253547|ref|YP_004596654.1|	-	0.0037	16.6	0.0	0.0062	15.9	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|336253547|ref|YP_004596654.1|	-	0.0044	16.3	0.0	0.0084	15.4	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
Pyr_redox	PF00070.27	gi|336253547|ref|YP_004596654.1|	-	0.015	15.9	0.3	0.051	14.1	0.2	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HAD_2	PF13419.6	gi|336253548|ref|YP_004596655.1|	-	1.8e-19	70.5	0.0	2.4e-19	70.1	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336253548|ref|YP_004596655.1|	-	4.9e-13	49.8	0.6	6.6e-12	46.2	0.6	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336253548|ref|YP_004596655.1|	-	4.2e-09	37.1	1.8	5e-09	36.8	1.8	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336253548|ref|YP_004596655.1|	-	2.4e-07	30.7	0.2	5.5e-07	29.6	0.2	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|336253548|ref|YP_004596655.1|	-	0.041	14.0	0.0	0.24	11.5	0.0	2.0	2	1	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
DUF222	PF02720.17	gi|336253548|ref|YP_004596655.1|	-	0.045	13.2	0.1	0.059	12.8	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF222)
Acid_phosphat_B	PF03767.14	gi|336253548|ref|YP_004596655.1|	-	0.09	12.4	0.0	0.43	10.1	0.0	1.9	2	0	0	2	2	2	0	HAD	superfamily,	subfamily	IIIB	(Acid	phosphatase)
Putative_PNPOx	PF01243.20	gi|336253549|ref|YP_004596656.1|	-	5.2e-16	58.6	0.0	7.1e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|336253549|ref|YP_004596656.1|	-	2.3e-14	53.6	0.2	2.7e-14	53.4	0.2	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|336253549|ref|YP_004596656.1|	-	0.003	17.1	0.0	0.0037	16.9	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
F420H2_quin_red	PF04075.14	gi|336253549|ref|YP_004596656.1|	-	0.03	14.4	0.4	0.063	13.4	0.4	1.7	1	1	0	1	1	1	0	F420H(2)-dependent	quinone	reductase
Glycos_transf_2	PF00535.26	gi|336253550|ref|YP_004596657.1|	-	1.8e-27	96.2	0.0	4.2e-27	95.0	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253550|ref|YP_004596657.1|	-	1.4e-12	48.0	0.0	1.2e-11	44.9	0.0	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|336253550|ref|YP_004596657.1|	-	2.3e-07	30.5	0.0	3.6e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|336253550|ref|YP_004596657.1|	-	3.4e-06	26.7	0.0	2.1e-05	24.2	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|336253550|ref|YP_004596657.1|	-	1.1e-05	25.9	0.4	0.00013	22.4	0.1	2.8	2	1	1	3	3	3	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|336253550|ref|YP_004596657.1|	-	1.3e-05	25.2	0.0	0.00011	22.2	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
SgrT	PF15894.5	gi|336253550|ref|YP_004596657.1|	-	0.022	14.7	0.0	0.055	13.4	0.0	1.6	2	0	0	2	2	2	0	Inhibitor	of	glucose	uptake	transporter	SgrT
HhH-GPD	PF00730.25	gi|336253552|ref|YP_004596659.1|	-	2.6e-14	53.6	0.0	3.3e-14	53.2	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|336253552|ref|YP_004596659.1|	-	6e-07	29.0	0.0	1.1e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|336253552|ref|YP_004596659.1|	-	0.031	14.9	0.0	0.34	11.6	0.0	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
Opy2	PF09463.10	gi|336253552|ref|YP_004596659.1|	-	0.22	11.9	3.9	0.33	11.3	3.9	1.2	1	0	0	1	1	1	0	Opy2	protein
EndIII_4Fe-2S	PF10576.9	gi|336253552|ref|YP_004596659.1|	-	1.9	8.9	5.1	3.4	8.1	5.1	1.5	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
Pectinesterase	PF01095.19	gi|336253553|ref|YP_004596660.1|	-	1.8e-75	253.5	0.0	2.2e-75	253.1	0.0	1.0	1	0	0	1	1	1	1	Pectinesterase
Beta_helix	PF13229.6	gi|336253553|ref|YP_004596660.1|	-	0.022	14.6	0.0	0.033	14.0	0.0	1.3	1	0	0	1	1	1	0	Right	handed	beta	helix	region
DUF2085	PF09858.9	gi|336253554|ref|YP_004596661.1|	-	2.8e-12	46.9	0.3	5.6e-12	46.0	0.3	1.4	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2085)
FUSC_2	PF13515.6	gi|336253554|ref|YP_004596661.1|	-	0.0024	18.0	7.1	0.036	14.2	5.2	2.0	1	1	0	1	1	1	1	Fusaric	acid	resistance	protein-like
ThrE	PF06738.12	gi|336253554|ref|YP_004596661.1|	-	1.9	7.8	7.0	2.5	7.4	7.0	1.1	1	0	0	1	1	1	0	Putative	threonine/serine	exporter
DUF543	PF04418.12	gi|336253554|ref|YP_004596661.1|	-	6.5	6.8	9.1	0.91	9.6	0.3	2.7	2	1	0	3	3	3	0	Domain	of	unknown	function	(DUF543)
TM2	PF05154.16	gi|336253555|ref|YP_004596662.1|	-	5.4e-16	58.7	3.8	7.8e-16	58.1	3.8	1.2	1	0	0	1	1	1	1	TM2	domain
zf-ribbon_3	PF13248.6	gi|336253555|ref|YP_004596662.1|	-	2.7e-12	45.6	11.6	4.1e-06	26.0	2.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|336253555|ref|YP_004596662.1|	-	3.3e-09	36.6	7.5	5.6e-09	35.9	7.4	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336253555|ref|YP_004596662.1|	-	6.8e-07	28.8	11.4	0.0032	17.1	2.2	2.7	2	1	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336253555|ref|YP_004596662.1|	-	3.1e-05	24.6	11.3	0.0048	17.6	1.4	2.2	2	0	0	2	2	2	2	zinc-ribbon	family
YhfH	PF14149.6	gi|336253555|ref|YP_004596662.1|	-	0.00015	21.7	19.6	0.011	15.7	3.0	4.0	2	2	2	4	4	4	2	YhfH-like	protein
DUF2116	PF09889.9	gi|336253555|ref|YP_004596662.1|	-	0.00034	20.5	7.2	0.13	12.2	3.4	2.4	2	0	0	2	2	2	2	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
UPF0547	PF10571.9	gi|336253555|ref|YP_004596662.1|	-	0.00098	19.1	13.4	0.076	13.1	1.9	2.3	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
DUF35_N	PF12172.8	gi|336253555|ref|YP_004596662.1|	-	0.009	15.9	5.9	0.92	9.4	0.3	2.8	2	2	0	2	2	2	2	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|336253555|ref|YP_004596662.1|	-	0.071	13.1	12.1	0.89	9.6	3.1	2.2	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C2HC5	PF06221.13	gi|336253555|ref|YP_004596662.1|	-	0.074	13.0	8.0	1.3	9.1	1.5	2.2	2	0	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-C4H2	PF10146.9	gi|336253555|ref|YP_004596662.1|	-	0.097	13.0	8.0	1.6	9.0	0.2	2.1	1	1	1	2	2	2	0	Zinc	finger-containing	protein
TF_Zn_Ribbon	PF08271.12	gi|336253555|ref|YP_004596662.1|	-	0.33	10.5	12.3	1	9.0	3.9	3.3	3	1	0	3	3	3	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|336253555|ref|YP_004596662.1|	-	0.39	10.7	8.7	3	7.9	1.4	2.9	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
C1_1	PF00130.22	gi|336253555|ref|YP_004596662.1|	-	0.49	10.3	9.7	2.1	8.3	0.5	2.3	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
RecR	PF02132.15	gi|336253555|ref|YP_004596662.1|	-	0.72	9.5	10.6	0.6	9.7	1.0	2.3	2	0	0	2	2	2	0	RecR	protein
Nudix_N_2	PF14803.6	gi|336253555|ref|YP_004596662.1|	-	2.2	8.2	16.5	37	4.4	5.1	4.0	2	2	0	2	2	2	0	Nudix	N-terminal
PHF5	PF03660.14	gi|336253555|ref|YP_004596662.1|	-	2.3	8.5	9.7	8.2	6.7	1.0	2.1	1	1	1	2	2	2	0	PHF5-like	protein
Zn_ribbon_17	PF17120.5	gi|336253555|ref|YP_004596662.1|	-	2.8	7.6	9.0	2.7	7.7	0.5	2.2	2	0	0	2	2	2	0	Zinc-ribbon,	C4HC2	type
zinc-ribbon_6	PF10005.9	gi|336253555|ref|YP_004596662.1|	-	2.8	8.7	7.2	2.5	8.8	1.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|336253555|ref|YP_004596662.1|	-	4.5	7.2	10.0	8.8	6.3	2.0	2.2	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Ribosomal_L32p	PF01783.23	gi|336253555|ref|YP_004596662.1|	-	7.5	6.9	5.7	6.4	7.1	1.1	2.3	2	0	0	2	2	2	0	Ribosomal	L32p	protein	family
DAO	PF01266.24	gi|336253556|ref|YP_004596663.1|	-	1.2e-26	94.2	0.2	1.9e-26	93.5	0.2	1.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Mqo	PF06039.15	gi|336253556|ref|YP_004596663.1|	-	1.4e-24	86.6	0.0	3e-23	82.1	0.0	2.0	1	1	0	1	1	1	1	Malate:quinone	oxidoreductase	(Mqo)
Pyr_redox_2	PF07992.14	gi|336253556|ref|YP_004596663.1|	-	6.8e-08	32.1	0.1	0.00043	19.6	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336253556|ref|YP_004596663.1|	-	0.00012	21.4	0.3	0.0013	18.0	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|336253556|ref|YP_004596663.1|	-	0.00033	20.7	0.1	0.14	12.2	0.0	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|336253556|ref|YP_004596663.1|	-	0.0043	16.4	0.0	0.0077	15.6	0.0	1.5	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
FAD_binding_2	PF00890.24	gi|336253556|ref|YP_004596663.1|	-	0.0045	16.1	0.0	0.0059	15.7	0.0	1.1	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|336253556|ref|YP_004596663.1|	-	0.006	15.3	0.1	0.04	12.6	0.0	1.9	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|336253556|ref|YP_004596663.1|	-	0.012	16.2	0.2	7.6	7.2	0.0	2.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253556|ref|YP_004596663.1|	-	0.024	14.9	0.2	0.11	12.8	0.0	2.2	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Na_Ca_ex	PF01699.24	gi|336253557|ref|YP_004596664.1|	-	2.1e-18	66.7	29.0	7.5e-11	42.2	7.3	2.5	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
Zip	PF02535.22	gi|336253558|ref|YP_004596665.1|	-	9.5e-06	25.1	0.0	2.1e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	ZIP	Zinc	transporter
DUF2391	PF09622.10	gi|336253559|ref|YP_004596666.1|	-	1.1e-06	28.1	1.1	2.2e-06	27.2	1.2	1.4	1	1	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
2HCT	PF03390.15	gi|336253559|ref|YP_004596666.1|	-	0.006	15.3	0.0	0.011	14.4	0.0	1.4	1	0	0	1	1	1	1	2-hydroxycarboxylate	transporter	family
Acetyltransf_1	PF00583.25	gi|336253560|ref|YP_004596667.1|	-	9.4e-17	61.3	0.1	2.1e-16	60.2	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336253560|ref|YP_004596667.1|	-	2.1e-12	47.1	0.1	7.6e-12	45.3	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336253560|ref|YP_004596667.1|	-	1.4e-09	38.2	0.4	9.3e-09	35.6	0.0	2.2	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336253560|ref|YP_004596667.1|	-	3.8e-06	26.8	0.0	7.3e-06	25.9	0.0	1.4	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|336253560|ref|YP_004596667.1|	-	4e-06	27.5	0.2	9.8e-06	26.3	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336253560|ref|YP_004596667.1|	-	5.2e-05	23.4	0.0	0.00019	21.6	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336253560|ref|YP_004596667.1|	-	0.00011	22.2	0.0	0.00025	21.1	0.0	1.6	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|336253560|ref|YP_004596667.1|	-	0.0084	16.2	0.0	0.018	15.1	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Mcm10	PF09332.11	gi|336253560|ref|YP_004596667.1|	-	0.019	14.4	0.1	0.029	13.8	0.1	1.2	1	0	0	1	1	1	0	Mcm10	replication	factor
Acetyltransf_8	PF13523.6	gi|336253560|ref|YP_004596667.1|	-	0.02	14.6	0.0	0.046	13.4	0.0	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
A2L_zn_ribbon	PF08792.10	gi|336253560|ref|YP_004596667.1|	-	0.25	11.1	1.6	8.6	6.2	0.4	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|336253560|ref|YP_004596667.1|	-	0.26	11.0	0.6	0.47	10.2	0.6	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
AsnC_trans_reg	PF01037.21	gi|336253562|ref|YP_004596669.1|	-	3.5e-13	49.3	0.0	6.3e-13	48.5	0.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|336253562|ref|YP_004596669.1|	-	2.8e-11	42.8	0.3	6.8e-11	41.6	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336253562|ref|YP_004596669.1|	-	6.2e-08	32.4	0.3	3.5e-07	30.0	0.1	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336253562|ref|YP_004596669.1|	-	2.6e-07	30.5	0.0	1e-06	28.6	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|336253562|ref|YP_004596669.1|	-	6.6e-06	25.9	0.1	9.7e-06	25.3	0.1	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336253562|ref|YP_004596669.1|	-	1.2e-05	25.3	0.6	2.7e-05	24.1	0.1	1.9	3	0	0	3	3	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|336253562|ref|YP_004596669.1|	-	2.9e-05	23.6	0.1	7.8e-05	22.2	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_DeoR	PF08220.12	gi|336253562|ref|YP_004596669.1|	-	4e-05	23.3	0.1	0.00026	20.7	0.0	2.1	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|336253562|ref|YP_004596669.1|	-	9.4e-05	22.5	0.0	0.00052	20.1	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336253562|ref|YP_004596669.1|	-	0.00019	21.4	0.0	0.00033	20.6	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336253562|ref|YP_004596669.1|	-	0.00039	20.3	0.0	0.00073	19.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336253562|ref|YP_004596669.1|	-	0.00067	19.5	0.0	0.0012	18.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|336253562|ref|YP_004596669.1|	-	0.00086	19.1	0.1	0.002	17.9	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR	PF01047.22	gi|336253562|ref|YP_004596669.1|	-	0.0011	18.9	0.0	0.0039	17.1	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336253562|ref|YP_004596669.1|	-	0.0017	18.1	0.1	0.0038	17.0	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336253562|ref|YP_004596669.1|	-	0.0027	17.8	0.0	0.0061	16.7	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_40	PF14493.6	gi|336253562|ref|YP_004596669.1|	-	0.0029	18.0	0.1	0.006	17.0	0.1	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
E3_UFM1_ligase	PF09743.9	gi|336253562|ref|YP_004596669.1|	-	0.0039	16.8	0.1	0.0066	16.1	0.1	1.6	1	1	0	1	1	1	1	E3	UFM1-protein	ligase	1
HTH_38	PF13936.6	gi|336253562|ref|YP_004596669.1|	-	0.0067	16.2	0.0	0.13	12.0	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|336253562|ref|YP_004596669.1|	-	0.011	15.8	0.0	0.034	14.2	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.6	gi|336253562|ref|YP_004596669.1|	-	0.011	15.5	0.0	0.025	14.4	0.0	1.6	2	0	0	2	2	1	0	Homeodomain-like	domain
GerE	PF00196.19	gi|336253562|ref|YP_004596669.1|	-	0.015	14.8	0.1	0.22	11.1	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Mga	PF05043.13	gi|336253562|ref|YP_004596669.1|	-	0.031	14.9	0.1	0.13	12.9	0.0	1.9	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
HTH_50	PF18024.1	gi|336253562|ref|YP_004596669.1|	-	0.034	13.7	0.0	0.064	12.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|336253562|ref|YP_004596669.1|	-	0.035	13.5	0.0	0.067	12.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_27	PF13463.6	gi|336253562|ref|YP_004596669.1|	-	0.036	14.6	0.1	0.13	12.8	0.1	1.9	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|336253562|ref|YP_004596669.1|	-	0.038	14.3	0.1	0.14	12.5	0.0	2.0	3	0	0	3	3	1	0	Transcriptional	regulator
DUF742	PF05331.11	gi|336253562|ref|YP_004596669.1|	-	0.074	12.9	0.1	0.26	11.1	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF742)
HTH_36	PF13730.6	gi|336253562|ref|YP_004596669.1|	-	0.081	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
GYD	PF08734.11	gi|336253562|ref|YP_004596669.1|	-	0.087	12.8	0.3	0.2	11.6	0.3	1.6	1	1	0	1	1	1	0	GYD	domain
HTH_41	PF14502.6	gi|336253562|ref|YP_004596669.1|	-	0.093	12.4	0.1	0.53	10.0	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|336253562|ref|YP_004596669.1|	-	0.11	12.5	0.0	0.28	11.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_29	PF13551.6	gi|336253562|ref|YP_004596669.1|	-	0.12	12.4	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Sigma70_r4_2	PF08281.12	gi|336253562|ref|YP_004596669.1|	-	0.16	11.7	0.0	0.32	10.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Pribosyltran	PF00156.27	gi|336253563|ref|YP_004596670.1|	-	9e-19	67.5	1.7	1.1e-18	67.2	1.7	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|336253563|ref|YP_004596670.1|	-	0.00014	21.4	0.1	0.00022	20.8	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|336253563|ref|YP_004596670.1|	-	0.0066	16.0	0.3	0.011	15.2	0.3	1.4	1	1	0	1	1	1	1	Phosphoribosyl	transferase
Xan_ur_permease	PF00860.20	gi|336253564|ref|YP_004596671.1|	-	2e-86	290.2	43.2	2.8e-86	289.7	43.2	1.2	1	0	0	1	1	1	1	Permease	family
Per1	PF04080.13	gi|336253564|ref|YP_004596671.1|	-	0.15	11.8	0.2	0.27	11.0	0.2	1.4	1	0	0	1	1	1	0	Per1-like	family
adh_short_C2	PF13561.6	gi|336253565|ref|YP_004596672.1|	-	2.3e-60	204.0	1.7	7.3e-59	199.2	1.7	2.0	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336253565|ref|YP_004596672.1|	-	1.3e-51	174.9	0.4	1.5e-51	174.6	0.4	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336253565|ref|YP_004596672.1|	-	7.8e-14	52.0	0.2	1e-13	51.6	0.2	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336253565|ref|YP_004596672.1|	-	3.9e-07	29.8	0.3	8.2e-07	28.7	0.2	1.5	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336253565|ref|YP_004596672.1|	-	0.00071	18.7	0.1	0.00099	18.2	0.1	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|336253565|ref|YP_004596672.1|	-	0.011	14.8	0.5	0.015	14.4	0.5	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336253565|ref|YP_004596672.1|	-	0.033	13.6	0.0	0.05	13.0	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|336253565|ref|YP_004596672.1|	-	0.038	13.9	1.2	0.054	13.4	1.2	1.4	1	0	0	1	1	1	0	NAD(P)H-binding
GDP_Man_Dehyd	PF16363.5	gi|336253565|ref|YP_004596672.1|	-	0.065	12.6	0.0	0.077	12.4	0.0	1.2	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
NAD_binding_4	PF07993.12	gi|336253565|ref|YP_004596672.1|	-	0.073	12.2	0.0	0.095	11.9	0.0	1.2	1	0	0	1	1	1	0	Male	sterility	protein
Aldedh	PF00171.22	gi|336253566|ref|YP_004596673.1|	-	1e-159	532.0	1.9	1.2e-159	531.8	1.9	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OmdA	PF13376.6	gi|336253566|ref|YP_004596673.1|	-	3	7.9	4.9	0.67	10.0	0.9	2.0	2	0	0	2	2	2	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
DUF1724	PF08350.10	gi|336253567|ref|YP_004596674.1|	-	3.9e-06	26.9	0.0	7.1e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_5	PF01022.20	gi|336253567|ref|YP_004596674.1|	-	6.2e-05	22.8	0.1	0.00081	19.2	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|336253567|ref|YP_004596674.1|	-	0.0001	22.2	0.1	0.00026	20.9	0.1	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336253567|ref|YP_004596674.1|	-	0.00051	19.8	0.4	0.002	17.9	0.0	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336253567|ref|YP_004596674.1|	-	0.00075	19.3	1.6	0.00096	19.0	0.2	1.9	2	0	0	2	2	2	1	MarR	family
Trp_repressor	PF01371.19	gi|336253567|ref|YP_004596674.1|	-	0.0042	17.2	0.1	0.04	14.0	0.0	2.2	2	0	0	2	2	2	1	Trp	repressor	protein
HTH_23	PF13384.6	gi|336253567|ref|YP_004596674.1|	-	0.0096	15.7	0.1	0.03	14.1	0.1	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_45	PF14947.6	gi|336253567|ref|YP_004596674.1|	-	0.026	14.5	0.0	0.044	13.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR	PF01047.22	gi|336253567|ref|YP_004596674.1|	-	0.028	14.3	0.0	0.064	13.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_26	PF13443.6	gi|336253567|ref|YP_004596674.1|	-	0.03	14.7	0.0	0.087	13.3	0.0	1.8	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_7	PF02796.15	gi|336253567|ref|YP_004596674.1|	-	0.049	13.7	0.0	0.14	12.3	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_24	PF13412.6	gi|336253567|ref|YP_004596674.1|	-	0.059	12.9	0.0	0.16	11.6	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
EamA	PF00892.20	gi|336253568|ref|YP_004596675.1|	-	3.2e-33	114.8	38.3	2.6e-19	69.7	13.1	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TMEM234	PF10639.9	gi|336253568|ref|YP_004596675.1|	-	0.16	12.0	4.1	1.1	9.4	1.0	2.4	2	0	0	2	2	2	0	Putative	transmembrane	family	234
PGPGW	PF09656.10	gi|336253568|ref|YP_004596675.1|	-	0.4	10.2	11.0	1.9	8.1	0.1	3.5	3	0	0	3	3	3	0	Putative	transmembrane	protein	(PGPGW)
eRF1_2	PF03464.15	gi|336253569|ref|YP_004596676.1|	-	3.7e-23	82.3	0.0	5.9e-23	81.7	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
acVLRF1	PF18859.1	gi|336253569|ref|YP_004596676.1|	-	9.4e-18	64.8	6.6	9.4e-18	64.8	6.6	2.2	2	1	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
eRF1_3	PF03465.15	gi|336253569|ref|YP_004596676.1|	-	1.9e-16	60.6	0.0	1.3e-15	57.8	0.0	2.2	1	1	0	1	1	1	1	eRF1	domain	3
baeRF_family10	PF18854.1	gi|336253569|ref|YP_004596676.1|	-	3e-15	56.7	0.7	3e-15	56.7	0.7	1.9	1	1	1	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
baeRF_family3	PF18845.1	gi|336253569|ref|YP_004596676.1|	-	0.00022	21.6	2.3	0.00039	20.7	2.3	1.6	1	1	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	3
baeRF_family2	PF18844.1	gi|336253569|ref|YP_004596676.1|	-	0.00038	20.5	7.5	0.00087	19.4	7.5	1.5	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	2
baeRF_family12	PF18856.1	gi|336253569|ref|YP_004596676.1|	-	0.002	18.7	0.3	0.03	14.9	0.1	2.4	2	1	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	12
Metal_resist	PF13801.6	gi|336253569|ref|YP_004596676.1|	-	8.4	6.6	12.5	0.18	12.0	4.9	2.1	3	0	0	3	3	3	0	Heavy-metal	resistance
zinc_ribbon_4	PF13717.6	gi|336253570|ref|YP_004596677.1|	-	0.011	15.7	0.1	0.023	14.6	0.1	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
HTH_40	PF14493.6	gi|336253570|ref|YP_004596677.1|	-	0.13	12.7	0.0	0.31	11.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4147	PF13660.6	gi|336253571|ref|YP_004596678.1|	-	1.1e-79	267.1	2.6	1.1e-79	267.1	2.6	2.2	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|336253571|ref|YP_004596678.1|	-	1.2e-30	105.9	4.8	1.5e-30	105.6	3.2	2.1	2	0	0	2	2	2	1	MOFRL	family
CbiG_N	PF11760.8	gi|336253571|ref|YP_004596678.1|	-	0.016	15.2	0.5	0.052	13.5	0.0	2.2	2	0	0	2	2	2	0	Cobalamin	synthesis	G	N-terminal
MFS_1	PF07690.16	gi|336253572|ref|YP_004596679.1|	-	5.8e-47	160.3	54.6	3.5e-35	121.6	22.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|336253572|ref|YP_004596679.1|	-	0.3	10.3	35.7	0.47	9.7	35.7	1.2	1	0	0	1	1	1	0	Uncharacterised	MFS-type	transporter	YbfB
MFS_1_like	PF12832.7	gi|336253572|ref|YP_004596679.1|	-	0.37	9.6	19.9	2.9	6.6	13.9	3.2	1	1	1	2	2	2	0	MFS_1	like	family
DUF4225	PF13988.6	gi|336253572|ref|YP_004596679.1|	-	2.8	7.5	5.9	0.25	10.9	1.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4225)
PTA_PTB	PF01515.19	gi|336253573|ref|YP_004596680.1|	-	3.7e-95	318.9	0.0	5.3e-95	318.4	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
malic	PF00390.19	gi|336253573|ref|YP_004596680.1|	-	1.2e-28	100.1	0.0	2.4e-26	92.7	0.0	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|336253573|ref|YP_004596680.1|	-	2.7e-21	76.0	1.9	6.1e-21	74.9	1.9	1.6	1	1	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
DUF2171	PF09939.9	gi|336253574|ref|YP_004596681.1|	-	0.025	14.8	1.6	0.11	12.8	1.6	2.0	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
Peptidase_M14	PF00246.24	gi|336253575|ref|YP_004596682.1|	-	3.3e-09	37.0	0.0	7.9e-09	35.7	0.0	1.5	1	1	0	1	1	1	1	Zinc	carboxypeptidase
Acyl-CoA_dh_1	PF00441.24	gi|336253576|ref|YP_004596683.1|	-	4.2e-52	176.3	4.1	6.6e-52	175.7	4.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|336253576|ref|YP_004596683.1|	-	4.1e-33	114.4	0.1	1.1e-32	113.0	0.1	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|336253576|ref|YP_004596683.1|	-	4e-25	87.9	0.0	1e-24	86.5	0.0	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|336253576|ref|YP_004596683.1|	-	9.6e-25	87.4	8.0	1.9e-24	86.4	8.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
DUF743	PF05332.11	gi|336253576|ref|YP_004596683.1|	-	0.022	14.8	0.5	0.039	14.0	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF743)
PDZ_5	PF17817.1	gi|336253576|ref|YP_004596683.1|	-	1.3	9.3	4.1	5.5	7.3	0.1	3.2	3	0	0	3	3	3	0	PDZ	domain
MM_CoA_mutase	PF01642.22	gi|336253577|ref|YP_004596684.1|	-	7e-215	714.4	0.3	8e-215	714.2	0.3	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Met_asp_mut_E	PF06368.11	gi|336253577|ref|YP_004596684.1|	-	0.0039	15.7	0.1	0.0075	14.8	0.1	1.4	1	0	0	1	1	1	1	Methylaspartate	mutase	E	chain	(MutE)
PrkA	PF06798.12	gi|336253577|ref|YP_004596684.1|	-	0.41	10.2	6.8	0.25	10.9	4.6	1.7	2	0	0	2	2	2	0	PrkA	serine	protein	kinase	C-terminal	domain
Abhydrolase_6	PF12697.7	gi|336253578|ref|YP_004596685.1|	-	4e-25	89.7	3.5	4.9e-25	89.4	3.5	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336253578|ref|YP_004596685.1|	-	1.3e-19	70.9	0.0	1.5e-18	67.4	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336253578|ref|YP_004596685.1|	-	1.6e-15	57.0	0.1	6.2e-15	55.1	0.1	1.8	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
UPF0227	PF05728.12	gi|336253578|ref|YP_004596685.1|	-	4.9e-05	23.4	0.0	0.00014	21.8	0.0	1.7	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0227)
Ndr	PF03096.14	gi|336253578|ref|YP_004596685.1|	-	0.00098	17.9	0.0	0.002	16.9	0.0	1.4	2	0	0	2	2	2	1	Ndr	family
Esterase	PF00756.20	gi|336253578|ref|YP_004596685.1|	-	0.021	14.5	0.0	0.028	14.0	0.0	1.4	1	1	0	1	1	1	0	Putative	esterase
Palm_thioest	PF02089.15	gi|336253578|ref|YP_004596685.1|	-	0.025	14.4	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	Palmitoyl	protein	thioesterase
Abhydrolase_5	PF12695.7	gi|336253578|ref|YP_004596685.1|	-	0.058	13.2	0.0	0.22	11.3	0.0	1.9	2	1	1	3	3	3	0	Alpha/beta	hydrolase	family
DUF2920	PF11144.8	gi|336253578|ref|YP_004596685.1|	-	0.072	12.2	0.0	0.087	12.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2920)
PGAP1	PF07819.13	gi|336253578|ref|YP_004596685.1|	-	0.073	12.8	0.1	2	8.1	0.1	2.1	1	1	1	2	2	2	0	PGAP1-like	protein
Ser_hydrolase	PF06821.13	gi|336253578|ref|YP_004596685.1|	-	0.1	12.5	0.0	3.8	7.3	0.0	2.1	2	0	0	2	2	2	0	Serine	hydrolase
Thioesterase	PF00975.20	gi|336253578|ref|YP_004596685.1|	-	0.16	12.1	0.0	0.24	11.5	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
Peptidase_S28	PF05577.12	gi|336253578|ref|YP_004596685.1|	-	0.28	9.9	0.0	0.4	9.4	0.0	1.1	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
adh_short_C2	PF13561.6	gi|336253579|ref|YP_004596686.1|	-	9.8e-48	162.7	0.0	1.4e-47	162.3	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336253579|ref|YP_004596686.1|	-	2.9e-38	131.3	0.0	3.4e-38	131.1	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336253579|ref|YP_004596686.1|	-	3.1e-08	33.7	0.0	5.1e-08	33.0	0.0	1.3	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|336253579|ref|YP_004596686.1|	-	0.016	15.1	0.1	0.031	14.2	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Cupin_2	PF07883.11	gi|336253580|ref|YP_004596687.1|	-	3.9e-16	58.5	0.4	5.4e-16	58.1	0.4	1.2	1	0	0	1	1	1	1	Cupin	domain
CDO_I	PF05995.12	gi|336253580|ref|YP_004596687.1|	-	0.0002	20.7	0.0	0.01	15.1	0.0	2.1	1	1	0	1	1	1	1	Cysteine	dioxygenase	type	I
Cupin_3	PF05899.12	gi|336253580|ref|YP_004596687.1|	-	0.00049	19.7	0.1	0.00068	19.3	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
HutD	PF05962.11	gi|336253580|ref|YP_004596687.1|	-	0.0013	18.8	0.0	0.0016	18.5	0.0	1.2	1	0	0	1	1	1	1	HutD
MannoseP_isomer	PF01050.18	gi|336253580|ref|YP_004596687.1|	-	0.0013	18.6	0.0	0.0015	18.4	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
AraC_binding	PF02311.19	gi|336253580|ref|YP_004596687.1|	-	0.0016	18.4	0.0	0.0021	18.0	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
PCO_ADO	PF07847.12	gi|336253580|ref|YP_004596687.1|	-	0.024	14.1	0.0	0.052	13.0	0.0	1.5	1	1	0	2	2	2	0	PCO_ADO
Auxin_BP	PF02041.16	gi|336253580|ref|YP_004596687.1|	-	0.17	11.5	0.2	0.39	10.4	0.2	1.7	1	1	0	1	1	1	0	Auxin	binding	protein
FAA_hydrolase	PF01557.18	gi|336253581|ref|YP_004596688.1|	-	8.1e-48	163.0	0.0	9.8e-48	162.7	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
PALP	PF00291.25	gi|336253582|ref|YP_004596689.1|	-	1.5e-70	238.0	4.7	1.8e-70	237.7	4.7	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Metallophos_2	PF12850.7	gi|336253583|ref|YP_004596690.1|	-	1.5e-07	31.7	0.6	8.5e-07	29.3	0.5	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336253583|ref|YP_004596690.1|	-	6.5e-07	30.1	0.3	1.6e-05	25.6	0.3	2.2	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|336253583|ref|YP_004596690.1|	-	6.9e-06	25.6	0.0	1.3e-05	24.7	0.0	1.3	1	1	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
zinc-ribbons_6	PF07191.12	gi|336253584|ref|YP_004596691.1|	-	0.00012	22.0	0.7	0.00014	21.8	0.7	1.1	1	0	0	1	1	1	1	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|336253584|ref|YP_004596691.1|	-	0.00061	19.9	3.8	0.00094	19.3	3.8	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|336253584|ref|YP_004596691.1|	-	0.0017	18.4	1.2	0.0021	18.0	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|336253584|ref|YP_004596691.1|	-	0.0029	17.6	1.1	0.0029	17.6	1.1	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1272	PF06906.11	gi|336253584|ref|YP_004596691.1|	-	0.01	15.9	4.6	0.023	14.8	4.6	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
TackOD1	PF18551.1	gi|336253584|ref|YP_004596691.1|	-	0.02	14.6	0.6	0.02	14.5	0.6	1.0	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-P11	PF03854.14	gi|336253584|ref|YP_004596691.1|	-	0.021	14.5	0.4	0.026	14.2	0.4	1.1	1	0	0	1	1	1	0	P-11	zinc	finger
Zn_Tnp_IS91	PF14319.6	gi|336253584|ref|YP_004596691.1|	-	0.051	13.6	1.4	0.059	13.4	1.4	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf_UBZ	PF18439.1	gi|336253584|ref|YP_004596691.1|	-	0.069	12.7	2.4	0.81	9.3	0.2	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_SprT	PF17283.2	gi|336253584|ref|YP_004596691.1|	-	0.074	13.0	2.3	0.15	11.9	2.3	1.6	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|336253584|ref|YP_004596691.1|	-	0.11	12.6	4.7	0.97	9.6	4.7	2.0	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_5	PF13719.6	gi|336253584|ref|YP_004596691.1|	-	0.11	12.2	0.9	2.3	8.0	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|336253584|ref|YP_004596691.1|	-	0.17	11.7	5.5	1	9.2	0.5	2.1	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|336253584|ref|YP_004596691.1|	-	0.18	11.5	4.1	0.37	10.5	4.1	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF983	PF06170.12	gi|336253584|ref|YP_004596691.1|	-	0.36	11.2	0.3	0.36	11.2	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
AP_endonuc_2	PF01261.24	gi|336253586|ref|YP_004596693.1|	-	6.6e-19	68.2	3.2	1e-18	67.6	3.2	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UxuA	PF03786.13	gi|336253586|ref|YP_004596693.1|	-	0.094	11.5	0.0	0.16	10.7	0.0	1.3	1	0	0	1	1	1	0	D-mannonate	dehydratase	(UxuA)
Rubredoxin_2	PF18073.1	gi|336253587|ref|YP_004596694.1|	-	0.0012	18.6	1.8	0.036	13.8	0.2	2.4	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
Lar_restr_allev	PF14354.6	gi|336253587|ref|YP_004596694.1|	-	0.0088	16.4	0.5	0.011	16.1	0.5	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Zn_ribbon_SprT	PF17283.2	gi|336253587|ref|YP_004596694.1|	-	0.12	12.3	5.2	0.28	11.1	1.1	2.4	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
Rubredoxin	PF00301.20	gi|336253587|ref|YP_004596694.1|	-	0.22	11.6	3.7	0.33	11.0	0.4	2.1	2	0	0	2	2	2	0	Rubredoxin
Ogr_Delta	PF04606.12	gi|336253587|ref|YP_004596694.1|	-	1.1	9.4	3.9	0.67	10.0	1.7	1.9	1	1	1	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-MIZ	PF02891.20	gi|336253587|ref|YP_004596694.1|	-	5.9	6.7	7.0	7.8	6.3	1.4	2.2	1	1	1	2	2	2	0	MIZ/SP-RING	zinc	finger
Spermine_synth	PF01564.17	gi|336253588|ref|YP_004596695.1|	-	1.3e-09	37.8	0.0	1.9e-09	37.2	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
MTS	PF05175.14	gi|336253588|ref|YP_004596695.1|	-	0.043	13.4	0.0	0.072	12.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_30	PF05430.11	gi|336253588|ref|YP_004596695.1|	-	0.063	13.2	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
PCMT	PF01135.19	gi|336253588|ref|YP_004596695.1|	-	0.16	11.7	0.0	0.28	10.9	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrgI	PF12666.7	gi|336253588|ref|YP_004596695.1|	-	0.2	12.4	8.0	3.2	8.5	0.8	3.4	3	0	0	3	3	3	0	PrgI	family	protein
Polyketide_cyc2	PF10604.9	gi|336253590|ref|YP_004596697.1|	-	0.00043	20.6	1.1	0.00084	19.6	1.1	1.6	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
CBM60	PF16841.5	gi|336253591|ref|YP_004596698.1|	-	0.016	15.6	0.2	0.51	10.8	0.1	3.1	2	0	0	2	2	2	0	Ca-dependent	carbohydrate-binding	module	xylan-binding
Cytochrom_B559a	PF00284.20	gi|336253592|ref|YP_004596699.1|	-	0.16	11.8	0.1	0.27	11.0	0.1	1.4	1	0	0	1	1	1	0	Lumenal	portion	of	Cytochrome	b559,	alpha	(gene	psbE)	subunit
ArsA_ATPase	PF02374.15	gi|336253593|ref|YP_004596700.1|	-	2.6e-69	233.7	0.0	3e-69	233.5	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|336253593|ref|YP_004596700.1|	-	1.2e-09	38.3	0.0	3.4e-09	36.8	0.0	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|336253593|ref|YP_004596700.1|	-	1.9e-09	37.7	0.0	3.4e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|336253593|ref|YP_004596700.1|	-	2.1e-05	24.1	0.0	0.0013	18.2	0.0	2.2	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_26	PF13500.6	gi|336253593|ref|YP_004596700.1|	-	0.0034	17.2	0.0	0.12	12.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
ATPase	PF06745.13	gi|336253593|ref|YP_004596700.1|	-	0.01	15.2	0.1	0.018	14.4	0.1	1.4	1	1	0	1	1	1	0	KaiC
PhoH	PF02562.16	gi|336253593|ref|YP_004596700.1|	-	0.012	15.1	0.1	0.025	14.0	0.0	1.5	2	0	0	2	2	2	0	PhoH-like	protein
AAA_16	PF13191.6	gi|336253593|ref|YP_004596700.1|	-	0.014	15.8	0.3	0.051	14.0	0.3	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
Fer4_NifH	PF00142.18	gi|336253593|ref|YP_004596700.1|	-	0.021	14.3	0.1	0.051	13.0	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|336253593|ref|YP_004596700.1|	-	0.021	14.4	3.4	0.052	13.1	1.8	2.3	2	1	1	3	3	3	0	AAA	domain
CHAD	PF05235.14	gi|336253593|ref|YP_004596700.1|	-	0.052	13.5	2.7	0.11	12.5	0.5	2.0	2	0	0	2	2	2	0	CHAD	domain
Tir_receptor_N	PF07490.11	gi|336253593|ref|YP_004596700.1|	-	0.061	13.2	0.1	0.097	12.5	0.1	1.3	1	0	0	1	1	1	0	Translocated	intimin	receptor	(Tir)	N-terminus
AAA_33	PF13671.6	gi|336253593|ref|YP_004596700.1|	-	0.073	13.2	0.4	0.38	10.9	0.0	2.4	3	1	0	3	3	3	0	AAA	domain
CBP_BcsQ	PF06564.12	gi|336253593|ref|YP_004596700.1|	-	0.094	12.2	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
NB-ARC	PF00931.22	gi|336253593|ref|YP_004596700.1|	-	0.1	11.8	0.1	0.21	10.7	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Zeta_toxin	PF06414.12	gi|336253593|ref|YP_004596700.1|	-	0.11	11.8	0.3	0.24	10.6	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
AAA_24	PF13479.6	gi|336253593|ref|YP_004596700.1|	-	0.16	11.7	0.1	1.4	8.6	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|336253593|ref|YP_004596700.1|	-	0.18	11.4	0.1	0.47	10.1	0.0	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DUF1611	PF07755.11	gi|336253593|ref|YP_004596700.1|	-	0.36	10.1	2.2	21	4.3	0.2	2.9	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
AAA_18	PF13238.6	gi|336253593|ref|YP_004596700.1|	-	0.72	10.4	4.3	1	9.9	0.5	2.7	1	1	1	3	3	3	0	AAA	domain
CstA	PF02554.14	gi|336253594|ref|YP_004596701.1|	-	1.3e-105	353.4	20.6	1.3e-105	353.4	20.6	1.5	2	0	0	2	2	2	1	Carbon	starvation	protein	CstA
CstA_5TM	PF13722.6	gi|336253594|ref|YP_004596701.1|	-	3.5e-31	108.0	3.7	3.5e-31	108.0	3.7	4.4	5	1	0	5	5	5	1	5TM	C-terminal	transporter	carbon	starvation	CstA
MMR_HSR1_C	PF08438.10	gi|336253597|ref|YP_004596704.1|	-	3.7e-32	111.2	0.0	7.2e-32	110.3	0.0	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|336253597|ref|YP_004596704.1|	-	1e-19	70.7	0.0	1.4e-18	67.0	0.0	2.8	2	2	0	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|336253597|ref|YP_004596704.1|	-	6.6e-08	32.5	0.0	1.5e-07	31.3	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|336253597|ref|YP_004596704.1|	-	2.2e-06	27.3	0.0	0.00039	20.0	0.0	2.6	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|336253597|ref|YP_004596704.1|	-	0.034	13.7	0.0	0.074	12.6	0.0	1.6	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.23	gi|336253597|ref|YP_004596704.1|	-	0.038	14.0	0.1	0.53	10.3	0.0	2.7	3	0	0	3	3	3	0	Dynamin	family
YchF-GTPase_C	PF06071.13	gi|336253597|ref|YP_004596704.1|	-	0.05	13.8	0.0	3.8	7.8	0.0	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF933)
VWA_2	PF13519.6	gi|336253597|ref|YP_004596704.1|	-	0.088	13.5	0.1	6.8	7.4	0.0	2.9	2	1	0	3	3	3	0	von	Willebrand	factor	type	A	domain
Roc	PF08477.13	gi|336253597|ref|YP_004596704.1|	-	0.14	12.4	0.0	2.2	8.5	0.0	2.6	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
RsgA_GTPase	PF03193.16	gi|336253597|ref|YP_004596704.1|	-	0.16	11.8	0.2	8.8	6.2	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
Phage_Mu_Gam	PF07352.12	gi|336253597|ref|YP_004596704.1|	-	0.19	11.6	1.1	0.48	10.3	0.6	1.8	1	1	1	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
DUF2976	PF11190.8	gi|336253598|ref|YP_004596705.1|	-	0.00071	19.3	0.6	0.00092	19.0	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2976)
Cation_ATPase_C	PF00689.21	gi|336253598|ref|YP_004596705.1|	-	0.0033	17.1	1.3	0.0035	17.1	1.3	1.1	1	0	0	1	1	1	1	Cation	transporting	ATPase,	C-terminus
Ferric_reduct	PF01794.19	gi|336253598|ref|YP_004596705.1|	-	0.0097	16.0	0.2	0.013	15.6	0.2	1.3	1	0	0	1	1	1	1	Ferric	reductase	like	transmembrane	component
DUF2417	PF10329.9	gi|336253598|ref|YP_004596705.1|	-	0.1	12.0	0.6	0.13	11.7	0.1	1.4	1	1	0	1	1	1	0	Region	of	unknown	function	(DUF2417)
Phage_holin_3_6	PF07332.11	gi|336253598|ref|YP_004596705.1|	-	0.2	11.7	12.1	0.27	11.3	11.6	1.4	1	1	1	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Aminotran_5	PF00266.19	gi|336253599|ref|YP_004596706.1|	-	7.6e-21	74.5	0.0	9.4e-21	74.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Methyltransf_11	PF08241.12	gi|336253600|ref|YP_004596707.1|	-	8.5e-22	77.6	0.0	1.3e-21	77.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336253600|ref|YP_004596707.1|	-	1.3e-16	61.0	0.0	2.1e-16	60.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336253600|ref|YP_004596707.1|	-	5.3e-16	58.9	0.0	7.1e-16	58.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253600|ref|YP_004596707.1|	-	7.2e-13	48.6	0.0	8.7e-13	48.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336253600|ref|YP_004596707.1|	-	6.7e-12	46.0	0.0	1.1e-11	45.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336253600|ref|YP_004596707.1|	-	6.2e-08	32.3	0.0	8.1e-08	31.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|336253600|ref|YP_004596707.1|	-	0.00011	21.8	0.0	0.00017	21.3	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_29	PF03141.16	gi|336253600|ref|YP_004596707.1|	-	0.16	10.5	0.0	0.21	10.1	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MEDS	PF14417.6	gi|336253602|ref|YP_004596709.1|	-	1.9e-53	180.6	1.3	6.3e-53	178.9	1.3	2.0	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
HATPase_c	PF02518.26	gi|336253602|ref|YP_004596709.1|	-	1.7e-30	105.8	0.0	9.9e-30	103.3	0.0	2.2	1	1	1	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|336253602|ref|YP_004596709.1|	-	1.4e-10	41.6	5.3	0.0019	18.5	0.0	5.0	6	0	0	6	6	6	2	GAF	domain
GAF	PF01590.26	gi|336253602|ref|YP_004596709.1|	-	4e-10	40.4	0.0	0.00013	22.6	0.0	3.4	4	0	0	4	4	4	2	GAF	domain
GAF_3	PF13492.6	gi|336253602|ref|YP_004596709.1|	-	1.6e-09	38.2	0.0	0.0059	17.0	0.0	4.1	3	1	0	3	3	3	3	GAF	domain
HisKA	PF00512.25	gi|336253602|ref|YP_004596709.1|	-	3.5e-09	36.6	0.1	3.5e-09	36.6	0.1	3.6	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|336253602|ref|YP_004596709.1|	-	0.00011	22.0	0.0	0.00026	20.9	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
ATPase	PF06745.13	gi|336253602|ref|YP_004596709.1|	-	0.002	17.5	0.0	0.0039	16.6	0.0	1.5	1	0	0	1	1	1	1	KaiC
HATPase_c_2	PF13581.6	gi|336253602|ref|YP_004596709.1|	-	0.035	14.1	0.0	0.085	12.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336253602|ref|YP_004596709.1|	-	0.17	11.7	0.0	0.38	10.6	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
UPF0158	PF03682.13	gi|336253602|ref|YP_004596709.1|	-	0.23	11.4	4.5	0.3	11.0	0.4	3.0	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0158)
Carb_kinase	PF01256.17	gi|336253603|ref|YP_004596710.1|	-	4.5e-34	118.0	1.8	6e-34	117.6	1.8	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.15	gi|336253603|ref|YP_004596710.1|	-	1.2e-05	24.8	0.9	0.0023	17.4	0.1	2.2	2	0	0	2	2	2	2	Hydroxyethylthiazole	kinase	family
Pribosyltran	PF00156.27	gi|336253604|ref|YP_004596711.1|	-	1.8e-27	95.8	0.5	5.8e-26	90.9	0.5	2.0	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|336253604|ref|YP_004596711.1|	-	0.0079	15.7	0.0	0.011	15.2	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|336253604|ref|YP_004596711.1|	-	0.18	11.3	0.0	0.44	10.0	0.0	1.6	2	0	0	2	2	2	0	Phosphoribosyl	transferase
DUF412	PF04217.13	gi|336253605|ref|YP_004596712.1|	-	0.19	11.6	1.7	0.41	10.5	1.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF412
HHH_5	PF14520.6	gi|336253606|ref|YP_004596713.1|	-	1.4e-11	44.8	0.0	3.7e-11	43.5	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|336253606|ref|YP_004596713.1|	-	3.1e-11	43.2	0.0	8.9e-11	41.7	0.0	1.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
ERCC4	PF02732.15	gi|336253606|ref|YP_004596713.1|	-	1.3e-09	38.4	0.0	1.7e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	ERCC4	domain
HHH	PF00633.23	gi|336253606|ref|YP_004596713.1|	-	2.2e-06	27.3	0.2	0.00011	21.9	0.1	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
APH	PF01636.23	gi|336253607|ref|YP_004596714.1|	-	7.6e-38	130.8	4.1	1.2e-37	130.1	4.1	1.3	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
DUF1679	PF07914.11	gi|336253607|ref|YP_004596714.1|	-	0.00046	19.2	0.0	0.00061	18.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1679)
EcKinase	PF02958.20	gi|336253607|ref|YP_004596714.1|	-	0.0021	17.5	0.0	0.003	16.9	0.0	1.2	1	0	0	1	1	1	1	Ecdysteroid	kinase
Virul_fac_BrkB	PF03631.15	gi|336253608|ref|YP_004596715.1|	-	2.1e-33	116.0	29.2	2.6e-33	115.7	29.2	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
DUF1077	PF06417.12	gi|336253608|ref|YP_004596715.1|	-	0.011	15.8	0.1	0.022	14.7	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1077)
DUF2196	PF09962.9	gi|336253609|ref|YP_004596716.1|	-	3.3e-17	62.2	1.7	3.6e-17	62.1	1.7	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2196)
SNN_linker	PF09050.10	gi|336253609|ref|YP_004596716.1|	-	0.055	13.2	0.2	0.12	12.2	0.2	1.5	1	0	0	1	1	1	0	Stannin	unstructured	linker
Lactamase_B_2	PF12706.7	gi|336253610|ref|YP_004596717.1|	-	4.7e-14	52.4	0.1	6.2e-14	52.0	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336253610|ref|YP_004596717.1|	-	8.9e-13	48.4	0.1	1.1e-12	48.1	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336253610|ref|YP_004596717.1|	-	4.2e-07	30.2	3.0	3.8e-06	27.1	1.6	2.2	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
SelR	PF01641.18	gi|336253611|ref|YP_004596718.1|	-	6.2e-55	184.5	0.2	7.2e-55	184.3	0.2	1.0	1	0	0	1	1	1	1	SelR	domain
HECT_2	PF09814.9	gi|336253611|ref|YP_004596718.1|	-	0.02	13.8	0.0	1.7	7.4	0.0	2.0	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
zinc_ribbon_10	PF10058.9	gi|336253611|ref|YP_004596718.1|	-	0.02	14.6	0.3	1.1	9.1	0.0	2.3	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TF_Zn_Ribbon	PF08271.12	gi|336253611|ref|YP_004596718.1|	-	0.025	14.1	5.1	1.9	8.0	0.2	3.2	3	0	0	3	3	3	0	TFIIB	zinc-binding
Yippee-Mis18	PF03226.14	gi|336253611|ref|YP_004596718.1|	-	0.028	14.6	0.3	0.075	13.2	0.3	1.7	1	1	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
ADD_ATRX	PF17981.1	gi|336253611|ref|YP_004596718.1|	-	0.031	14.1	0.2	3.8	7.5	0.0	2.2	2	0	0	2	2	2	0	Cysteine	Rich	ADD	domain
DUF1610	PF07754.11	gi|336253611|ref|YP_004596718.1|	-	0.062	13.3	0.3	0.062	13.3	0.3	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.6	gi|336253611|ref|YP_004596718.1|	-	0.12	11.8	2.1	12	5.5	0.0	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF2072	PF09845.9	gi|336253611|ref|YP_004596718.1|	-	0.16	12.2	1.7	0.47	10.7	1.6	1.8	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
DZR	PF12773.7	gi|336253611|ref|YP_004596718.1|	-	0.22	11.6	3.8	2.4	8.3	3.8	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|336253611|ref|YP_004596718.1|	-	0.24	11.6	2.4	19	5.5	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336253611|ref|YP_004596718.1|	-	0.26	11.1	3.4	2.3	8.1	0.5	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|336253611|ref|YP_004596718.1|	-	0.31	10.8	5.4	4	7.2	0.1	3.3	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Ribosomal_L37e	PF01907.19	gi|336253611|ref|YP_004596718.1|	-	0.6	10.3	3.4	3.6	7.8	0.3	2.2	2	0	0	2	2	2	0	Ribosomal	protein	L37e
TF_Zn_Ribbon	PF08271.12	gi|336253612|ref|YP_004596719.1|	-	0.0039	16.7	2.5	0.077	12.5	0.3	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
Rubredoxin_2	PF18073.1	gi|336253612|ref|YP_004596719.1|	-	0.0044	16.7	3.4	0.19	11.5	0.3	2.2	2	0	0	2	2	2	2	Rubredoxin	metal	binding	domain
HypA	PF01155.19	gi|336253612|ref|YP_004596719.1|	-	0.0062	16.5	0.2	0.0063	16.5	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PADR1	PF08063.12	gi|336253612|ref|YP_004596719.1|	-	0.011	15.4	0.3	0.21	11.4	0.0	2.0	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
zinc_ribbon_4	PF13717.6	gi|336253612|ref|YP_004596719.1|	-	0.014	15.3	1.6	0.42	10.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
NRDD	PF13597.6	gi|336253612|ref|YP_004596719.1|	-	0.017	14.0	0.3	0.018	13.8	0.3	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-ISL3	PF14690.6	gi|336253612|ref|YP_004596719.1|	-	0.037	14.7	5.0	5.2	7.8	0.2	3.0	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF35_N	PF12172.8	gi|336253612|ref|YP_004596719.1|	-	0.044	13.7	2.7	4	7.4	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DNA_RNApol_7kD	PF03604.13	gi|336253612|ref|YP_004596719.1|	-	0.053	13.2	0.9	0.36	10.5	0.1	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2H2_3	PF13878.6	gi|336253612|ref|YP_004596719.1|	-	0.055	13.3	0.3	6.5	6.7	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-ribbon_3	PF13248.6	gi|336253612|ref|YP_004596719.1|	-	0.065	12.7	2.8	1.3	8.5	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|336253612|ref|YP_004596719.1|	-	0.071	13.0	1.6	2.6	8.0	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-RING_7	PF02591.15	gi|336253612|ref|YP_004596719.1|	-	0.076	13.2	2.5	0.32	11.2	3.0	1.7	1	1	1	2	2	2	0	C4-type	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336253612|ref|YP_004596719.1|	-	0.088	12.9	4.3	0.28	11.3	4.3	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|336253612|ref|YP_004596719.1|	-	0.097	12.4	0.2	0.097	12.4	0.2	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Ribosomal_L32p	PF01783.23	gi|336253612|ref|YP_004596719.1|	-	0.099	12.9	0.2	8.3	6.8	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	L32p	protein	family
UPF0547	PF10571.9	gi|336253612|ref|YP_004596719.1|	-	0.18	11.9	4.1	2.3	8.4	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Saccharop_dh_N	PF04455.12	gi|336253613|ref|YP_004596720.1|	-	2.7e-35	120.7	0.0	6.1e-35	119.6	0.0	1.6	1	0	0	1	1	1	1	LOR/SDH	bifunctional	enzyme	conserved	region
TPP_enzyme_M	PF00205.22	gi|336253613|ref|YP_004596720.1|	-	0.0019	17.9	0.1	0.0071	16.1	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DS	PF01916.17	gi|336253613|ref|YP_004596720.1|	-	0.027	13.7	0.0	0.21	10.8	0.0	2.0	1	1	1	2	2	2	0	Deoxyhypusine	synthase
BAT	PF15915.5	gi|336253614|ref|YP_004596721.1|	-	2.5e-44	150.9	10.8	2.5e-44	150.9	10.8	2.8	3	1	0	3	3	3	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336253614|ref|YP_004596721.1|	-	3e-20	71.7	0.0	6.8e-20	70.6	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_2	PF13185.6	gi|336253614|ref|YP_004596721.1|	-	5.9e-18	65.5	0.8	5.9e-18	65.5	0.8	2.9	3	1	1	4	4	4	1	GAF	domain
GAF_3	PF13492.6	gi|336253614|ref|YP_004596721.1|	-	8e-08	32.7	0.1	5.2e-07	30.1	0.0	2.4	2	0	0	2	2	2	1	GAF	domain
PAS_4	PF08448.10	gi|336253614|ref|YP_004596721.1|	-	1e-07	32.2	0.7	1e-07	32.2	0.7	3.4	1	1	2	3	3	3	1	PAS	fold
GAF	PF01590.26	gi|336253614|ref|YP_004596721.1|	-	1e-07	32.6	0.1	9.5e-07	29.5	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
Sigma70_r4	PF04545.16	gi|336253614|ref|YP_004596721.1|	-	3.8e-05	23.1	0.0	0.00019	20.9	0.0	2.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|336253614|ref|YP_004596721.1|	-	0.00059	19.7	0.0	0.0015	18.4	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
PAS	PF00989.25	gi|336253614|ref|YP_004596721.1|	-	0.0042	17.1	0.2	0.017	15.1	0.0	2.2	2	0	0	2	2	2	1	PAS	fold
UPF0122	PF04297.14	gi|336253614|ref|YP_004596721.1|	-	0.0089	16.3	0.0	0.024	14.9	0.0	1.7	1	0	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DUF134	PF02001.16	gi|336253614|ref|YP_004596721.1|	-	0.02	15.4	0.0	0.059	13.9	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF134
GerE	PF00196.19	gi|336253614|ref|YP_004596721.1|	-	0.025	14.1	0.0	0.25	10.9	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|336253614|ref|YP_004596721.1|	-	0.046	13.4	0.1	0.24	11.1	0.1	2.4	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336253614|ref|YP_004596721.1|	-	0.089	12.4	0.0	0.36	10.4	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
SQS_PSY	PF00494.19	gi|336253615|ref|YP_004596722.1|	-	2.3e-67	227.3	9.0	2.8e-67	227.0	9.0	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
polyprenyl_synt	PF00348.17	gi|336253615|ref|YP_004596722.1|	-	0.093	11.8	0.0	0.41	9.7	0.0	1.9	2	0	0	2	2	2	0	Polyprenyl	synthetase
Caroten_synth	PF04240.12	gi|336253617|ref|YP_004596724.1|	-	1.6e-62	211.1	14.3	2.2e-62	210.7	14.3	1.2	1	0	0	1	1	1	1	Carotenoid	biosynthesis	protein
TMEM238	PF15125.6	gi|336253617|ref|YP_004596724.1|	-	0.063	13.5	0.9	0.063	13.5	0.9	2.3	2	0	0	2	2	2	0	TMEM238	protein	family
UbiA	PF01040.18	gi|336253618|ref|YP_004596725.1|	-	1.3e-27	96.8	17.6	1.8e-27	96.3	17.6	1.3	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Amino_oxidase	PF01593.24	gi|336253619|ref|YP_004596726.1|	-	3.3e-30	105.8	0.0	4.1e-30	105.5	0.0	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253619|ref|YP_004596726.1|	-	1.1e-16	60.8	0.1	2.7e-16	59.5	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336253619|ref|YP_004596726.1|	-	5.2e-12	46.0	9.1	2.2e-10	40.6	9.1	2.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336253619|ref|YP_004596726.1|	-	2.7e-06	26.7	2.5	4.4e-06	26.0	2.1	1.5	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|336253619|ref|YP_004596726.1|	-	3.4e-06	26.5	0.4	2.2e-05	23.8	0.5	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|336253619|ref|YP_004596726.1|	-	5.2e-06	26.1	0.0	1e-05	25.1	0.0	1.5	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|336253619|ref|YP_004596726.1|	-	1e-05	26.0	1.6	0.00014	22.4	0.5	2.9	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|336253619|ref|YP_004596726.1|	-	0.0001	21.7	0.5	0.00018	20.9	0.5	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|336253619|ref|YP_004596726.1|	-	0.00012	20.9	0.1	0.00045	19.0	1.0	1.4	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|336253619|ref|YP_004596726.1|	-	0.00066	19.0	0.7	0.0011	18.3	0.7	1.3	1	0	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|336253619|ref|YP_004596726.1|	-	0.0021	17.4	0.5	0.0031	16.8	0.5	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|336253619|ref|YP_004596726.1|	-	0.0026	17.1	0.0	0.011	15.0	0.1	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|336253619|ref|YP_004596726.1|	-	0.016	14.3	1.7	0.025	13.7	1.7	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
IlvN	PF07991.12	gi|336253619|ref|YP_004596726.1|	-	0.03	13.9	0.1	0.049	13.2	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
MCRA	PF06100.11	gi|336253619|ref|YP_004596726.1|	-	0.039	12.8	0.0	0.05	12.4	0.0	1.1	1	0	0	1	1	1	0	MCRA	family
3HCDH_N	PF02737.18	gi|336253619|ref|YP_004596726.1|	-	0.05	13.5	0.3	0.084	12.7	0.3	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|336253619|ref|YP_004596726.1|	-	0.054	13.9	0.0	0.089	13.2	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|336253619|ref|YP_004596726.1|	-	0.062	13.0	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
UDPG_MGDP_dh_N	PF03721.14	gi|336253619|ref|YP_004596726.1|	-	0.41	10.2	0.7	0.73	9.4	0.7	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Form_Nir_trans	PF01226.17	gi|336253620|ref|YP_004596727.1|	-	4e-45	154.0	14.6	4.9e-45	153.7	14.6	1.1	1	0	0	1	1	1	1	Formate/nitrite	transporter
Usp	PF00582.26	gi|336253620|ref|YP_004596727.1|	-	6.9e-15	55.8	14.6	9.7e-10	39.1	0.3	4.0	3	1	0	3	3	3	2	Universal	stress	protein	family
VAPB_antitox	PF02697.14	gi|336253621|ref|YP_004596728.1|	-	0.0092	16.7	0.2	0.01	16.6	0.2	1.1	1	0	0	1	1	1	1	Putative	antitoxin
eIF-1a	PF01176.19	gi|336253622|ref|YP_004596729.1|	-	3.2e-19	68.5	0.1	3.8e-19	68.3	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
CxxCxxCC	PF03692.15	gi|336253623|ref|YP_004596730.1|	-	2.8e-05	24.7	2.6	5e-05	23.9	2.6	1.5	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
FAA_hydrolase	PF01557.18	gi|336253624|ref|YP_004596731.1|	-	3.3e-49	167.5	0.0	3.9e-49	167.3	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|336253624|ref|YP_004596731.1|	-	0.068	14.1	0.1	0.22	12.5	0.1	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2437)
HTH_39	PF14090.6	gi|336253626|ref|YP_004596733.1|	-	0.0016	18.2	0.4	0.0021	17.7	0.4	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TRM13	PF05206.14	gi|336253626|ref|YP_004596733.1|	-	0.037	13.5	0.1	0.038	13.5	0.1	1.0	1	0	0	1	1	1	0	Methyltransferase	TRM13
Flg_hook	PF02120.16	gi|336253627|ref|YP_004596734.1|	-	0.11	12.4	0.0	0.24	11.3	0.0	1.7	1	1	0	1	1	1	0	Flagellar	hook-length	control	protein	FliK
CbiZ	PF01955.18	gi|336253628|ref|YP_004596735.1|	-	5.6e-39	134.2	1.4	9.1e-39	133.6	1.4	1.3	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
LytR_C	PF13399.6	gi|336253628|ref|YP_004596735.1|	-	0.048	14.6	2.3	0.98	10.4	0.1	2.5	2	1	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
Aminotran_1_2	PF00155.21	gi|336253629|ref|YP_004596736.1|	-	7.7e-41	140.5	0.0	9.5e-41	140.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|336253629|ref|YP_004596736.1|	-	0.0088	14.6	0.0	0.012	14.2	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|336253629|ref|YP_004596736.1|	-	0.037	13.3	0.0	0.061	12.6	0.0	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|336253629|ref|YP_004596736.1|	-	0.067	12.5	0.0	0.23	10.7	0.0	1.9	1	1	0	1	1	1	0	Beta-eliminating	lyase
NTP_transf_3	PF12804.7	gi|336253631|ref|YP_004596738.1|	-	1.1e-18	68.1	2.3	2.1e-18	67.2	2.3	1.5	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|336253631|ref|YP_004596738.1|	-	1.7e-05	24.7	0.0	2.7e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
NTP_transferase	PF00483.23	gi|336253631|ref|YP_004596738.1|	-	0.00024	20.8	0.0	0.00028	20.6	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
CTP_transf_3	PF02348.19	gi|336253631|ref|YP_004596738.1|	-	0.0016	18.4	0.0	0.011	15.7	0.0	1.9	1	1	0	1	1	1	1	Cytidylyltransferase
PSK_trans_fac	PF07704.11	gi|336253631|ref|YP_004596738.1|	-	0.036	14.8	1.7	0.99	10.2	0.7	2.4	2	0	0	2	2	2	0	Rv0623-like	transcription	factor
CobS	PF02654.15	gi|336253632|ref|YP_004596739.1|	-	7.3e-41	140.6	15.8	8.4e-41	140.4	15.8	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
CobD_Cbib	PF03186.13	gi|336253633|ref|YP_004596740.1|	-	2.1e-79	266.6	11.9	2.1e-79	266.6	11.9	1.3	1	1	0	1	1	1	1	CobD/Cbib	protein
Hydrolase	PF00702.26	gi|336253634|ref|YP_004596741.1|	-	1.3e-09	38.7	0.3	4.7e-09	36.8	0.3	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|336253634|ref|YP_004596741.1|	-	1.9e-06	28.1	0.0	2.7e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336253634|ref|YP_004596741.1|	-	1.4e-05	25.1	0.1	2.9e-05	24.0	0.1	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
eIF-5_eIF-2B	PF01873.17	gi|336253635|ref|YP_004596742.1|	-	2.6e-32	111.1	0.0	4.1e-32	110.5	0.0	1.3	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.20	gi|336253635|ref|YP_004596742.1|	-	1e-08	35.0	0.9	1.8e-08	34.2	0.9	1.4	1	0	0	1	1	1	1	TRAM	domain
CBM_4_9	PF02018.17	gi|336253635|ref|YP_004596742.1|	-	0.047	14.0	0.1	0.084	13.1	0.1	1.5	1	0	0	1	1	1	0	Carbohydrate	binding	domain
Lar_restr_allev	PF14354.6	gi|336253635|ref|YP_004596742.1|	-	0.052	13.9	0.5	0.63	10.5	0.5	2.2	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|336253635|ref|YP_004596742.1|	-	0.14	12.3	0.7	0.3	11.2	0.7	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|336253635|ref|YP_004596742.1|	-	0.15	12.0	3.8	0.11	12.4	1.6	1.9	2	0	0	2	2	2	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|336253635|ref|YP_004596742.1|	-	0.16	11.4	0.4	5.6	6.5	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2795	PF11387.8	gi|336253636|ref|YP_004596743.1|	-	0.047	13.9	0.3	1	9.6	0.3	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2795)
Bac_luciferase	PF00296.20	gi|336253637|ref|YP_004596744.1|	-	2.2e-53	181.7	0.1	2.6e-53	181.5	0.1	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DZR	PF12773.7	gi|336253638|ref|YP_004596745.1|	-	7e-11	42.0	31.4	1.8e-07	31.0	8.9	2.2	1	1	2	3	3	3	3	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336253638|ref|YP_004596745.1|	-	1.2e-07	31.2	13.2	0.0007	19.2	5.1	2.7	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336253638|ref|YP_004596745.1|	-	7.3e-07	28.4	11.2	0.0049	16.2	5.1	2.8	2	1	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336253638|ref|YP_004596745.1|	-	3.9e-06	27.5	8.3	0.00034	21.3	1.5	2.3	2	0	0	2	2	2	2	zinc-ribbon	family
RHH_1	PF01402.21	gi|336253638|ref|YP_004596745.1|	-	6.6e-05	22.7	3.4	6.6e-05	22.7	3.4	3.3	3	1	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
zf-NADH-PPase	PF09297.11	gi|336253638|ref|YP_004596745.1|	-	0.00069	19.2	11.3	0.45	10.2	0.1	4.2	4	0	0	4	4	4	2	NADH	pyrophosphatase	zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|336253638|ref|YP_004596745.1|	-	0.0047	16.9	8.2	0.013	15.4	4.1	2.3	1	1	1	2	2	2	1	zinc-ribbons
Nudix_N_2	PF14803.6	gi|336253638|ref|YP_004596745.1|	-	0.034	14.1	12.8	0.26	11.3	1.3	3.9	4	1	0	4	4	3	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|336253638|ref|YP_004596745.1|	-	0.034	13.7	3.3	4.4	7.0	0.1	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
DNA_ligase_ZBD	PF03119.16	gi|336253638|ref|YP_004596745.1|	-	0.038	14.0	2.0	4.1	7.5	0.1	3.1	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C3HC4_3	PF13920.6	gi|336253638|ref|YP_004596745.1|	-	0.22	11.4	5.0	0.52	10.2	0.5	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Cys_rich_KTR	PF14205.6	gi|336253638|ref|YP_004596745.1|	-	0.24	11.2	4.1	5.1	7.0	0.3	2.3	1	1	1	2	2	2	0	Cysteine-rich	KTR
NOB1_Zn_bind	PF08772.11	gi|336253638|ref|YP_004596745.1|	-	0.31	11.2	10.9	5.9	7.1	5.0	2.6	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|336253638|ref|YP_004596745.1|	-	0.33	11.0	8.8	2.1	8.4	2.2	2.4	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
VapB_antitoxin	PF09957.9	gi|336253638|ref|YP_004596745.1|	-	0.35	10.8	6.6	0.2	11.6	2.9	2.4	2	1	0	2	2	2	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
Zn-ribbon_8	PF09723.10	gi|336253638|ref|YP_004596745.1|	-	0.52	10.5	12.5	1.2	9.3	3.5	3.3	2	1	1	3	3	3	0	Zinc	ribbon	domain
Lsr2	PF11774.8	gi|336253638|ref|YP_004596745.1|	-	0.62	10.2	4.6	2.7	8.2	0.2	2.4	2	0	0	2	2	2	0	Lsr2
DUF3797	PF12677.7	gi|336253638|ref|YP_004596745.1|	-	1.1	9.2	3.9	7.6	6.5	0.2	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-C2HC_2	PF13913.6	gi|336253638|ref|YP_004596745.1|	-	2	8.4	5.6	23	5.0	0.3	2.6	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
OrfB_Zn_ribbon	PF07282.11	gi|336253638|ref|YP_004596745.1|	-	2.2	8.3	10.9	1.2	9.1	4.6	2.9	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
Sgf11	PF08209.11	gi|336253638|ref|YP_004596745.1|	-	2.3	7.9	5.9	6.8	6.4	0.3	2.7	2	1	1	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
zf-RING_7	PF02591.15	gi|336253638|ref|YP_004596745.1|	-	3.3	8.0	13.3	2.8	8.2	0.6	3.3	2	1	0	2	2	2	0	C4-type	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336253638|ref|YP_004596745.1|	-	3.7	7.6	9.0	8.3	6.5	0.7	3.3	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
HscB_4_cys	PF18256.1	gi|336253638|ref|YP_004596745.1|	-	4.9	7.1	16.9	1.1	9.2	5.6	2.9	2	1	0	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
Zn_ribbon_SprT	PF17283.2	gi|336253638|ref|YP_004596745.1|	-	5.5	7.0	13.3	15	5.6	0.4	3.7	2	1	1	3	3	3	0	SprT-like	zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|336253638|ref|YP_004596745.1|	-	7.3	6.4	11.1	0.45	10.2	3.0	2.5	2	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ISL3	PF14690.6	gi|336253638|ref|YP_004596745.1|	-	8.5	7.1	12.8	14	6.4	0.7	3.7	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
NRDD	PF13597.6	gi|336253638|ref|YP_004596745.1|	-	9.6	4.8	8.0	7.7	5.2	5.5	1.8	1	1	1	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
RHH_1	PF01402.21	gi|336253639|ref|YP_004596746.1|	-	4.3e-08	32.8	0.1	6e-08	32.3	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|336253639|ref|YP_004596746.1|	-	2.7e-05	24.3	0.0	2.7e-05	24.3	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
CHASE3	PF05227.13	gi|336253639|ref|YP_004596746.1|	-	0.022	14.7	0.8	0.024	14.5	0.8	1.1	1	0	0	1	1	1	0	CHASE3	domain
PSK_trans_fac	PF07704.11	gi|336253639|ref|YP_004596746.1|	-	0.053	14.3	0.3	0.084	13.6	0.3	1.4	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
Tubulin	PF00091.25	gi|336253640|ref|YP_004596747.1|	-	8.4e-38	130.5	3.0	8.4e-38	130.5	3.0	2.2	2	1	0	2	2	2	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|336253640|ref|YP_004596747.1|	-	2e-35	121.0	0.7	2e-35	121.0	0.7	3.0	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
ZT_dimer	PF16916.5	gi|336253640|ref|YP_004596747.1|	-	0.045	13.9	0.0	0.12	12.5	0.0	1.7	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
ThiF	PF00899.21	gi|336253640|ref|YP_004596747.1|	-	0.085	12.2	0.0	0.17	11.2	0.0	1.5	1	0	0	1	1	1	0	ThiF	family
Csm1_B	PF18211.1	gi|336253640|ref|YP_004596747.1|	-	0.13	12.1	0.0	0.48	10.3	0.0	1.9	1	0	0	1	1	1	0	Csm1	subunit	domain	B
zf-ribbon_3	PF13248.6	gi|336253641|ref|YP_004596748.1|	-	3.9e-10	38.8	13.4	0.00064	19.0	3.6	3.3	3	0	0	3	3	3	3	zinc-ribbon	domain
DZR	PF12773.7	gi|336253641|ref|YP_004596748.1|	-	3.1e-09	36.7	7.3	5.1e-07	29.6	2.7	2.3	2	1	0	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336253641|ref|YP_004596748.1|	-	9.6e-08	31.5	13.1	0.049	13.4	5.1	3.3	3	0	0	3	3	3	3	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|336253641|ref|YP_004596748.1|	-	1.8e-06	27.5	7.5	0.064	12.9	0.2	3.7	3	1	0	3	3	3	3	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|336253641|ref|YP_004596748.1|	-	3.2e-06	26.9	10.4	0.098	12.6	0.0	4.3	3	1	0	3	3	3	2	Nudix	N-terminal
DUF35_N	PF12172.8	gi|336253641|ref|YP_004596748.1|	-	7e-05	22.6	10.4	0.24	11.3	1.8	3.3	3	0	0	3	3	3	3	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_15	PF17032.5	gi|336253641|ref|YP_004596748.1|	-	0.019	15.7	11.1	1.8	9.3	8.3	2.6	1	1	1	2	2	2	0	zinc-ribbon	family
zinc-ribbons_6	PF07191.12	gi|336253641|ref|YP_004596748.1|	-	0.035	14.1	8.0	0.47	10.5	0.3	3.1	2	1	1	3	3	3	0	zinc-ribbons
Lar_restr_allev	PF14354.6	gi|336253641|ref|YP_004596748.1|	-	0.07	13.5	9.1	4.3	7.8	0.3	3.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Auto_anti-p27	PF06677.12	gi|336253641|ref|YP_004596748.1|	-	0.073	13.2	11.5	5.4	7.3	0.1	3.4	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
RecR	PF02132.15	gi|336253641|ref|YP_004596748.1|	-	0.11	12.1	10.2	3.9	7.1	0.0	3.3	3	0	0	3	3	3	0	RecR	protein
zf_C2H2_13	PF18508.1	gi|336253641|ref|YP_004596748.1|	-	0.21	11.2	8.3	1.3	8.7	0.1	3.3	2	1	1	3	3	3	0	Zinc	finger	domain
zf-tcix	PF14952.6	gi|336253641|ref|YP_004596748.1|	-	0.34	10.6	10.7	4.9	6.8	0.1	3.2	3	0	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn-ribbon_8	PF09723.10	gi|336253641|ref|YP_004596748.1|	-	0.4	10.8	17.2	1.9	8.7	0.7	4.0	2	2	3	5	5	5	0	Zinc	ribbon	domain
zf-RanBP	PF00641.18	gi|336253641|ref|YP_004596748.1|	-	0.52	9.7	13.4	0.21	10.9	2.8	3.3	3	0	0	3	3	3	0	Zn-finger	in	Ran	binding	protein	and	others
DUF2116	PF09889.9	gi|336253641|ref|YP_004596748.1|	-	0.55	10.3	4.8	32	4.6	0.0	3.2	3	0	0	3	3	3	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Ribosomal_L32p	PF01783.23	gi|336253641|ref|YP_004596748.1|	-	0.6	10.4	7.5	3.5	8.0	0.2	2.9	3	0	0	3	3	3	0	Ribosomal	L32p	protein	family
zf-dskA_traR	PF01258.17	gi|336253641|ref|YP_004596748.1|	-	0.63	10.0	9.0	21	5.2	0.2	4.0	4	0	0	4	4	4	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF2321	PF10083.9	gi|336253641|ref|YP_004596748.1|	-	0.89	9.2	6.1	0.61	9.7	0.5	2.4	1	1	2	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
OrfB_Zn_ribbon	PF07282.11	gi|336253641|ref|YP_004596748.1|	-	0.95	9.4	11.9	4	7.4	3.2	3.1	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
Rpr2	PF04032.16	gi|336253641|ref|YP_004596748.1|	-	1.1	9.6	7.1	20	5.6	3.6	2.9	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-IS66	PF13005.7	gi|336253641|ref|YP_004596748.1|	-	2.4	8.6	11.2	9.7	6.7	0.0	4.1	3	1	1	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
DUF3090	PF11290.8	gi|336253641|ref|YP_004596748.1|	-	3.4	7.4	7.1	3.4	7.5	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3090)
HypA	PF01155.19	gi|336253641|ref|YP_004596748.1|	-	4.4	7.3	9.6	20	5.2	0.7	2.4	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1610	PF07754.11	gi|336253641|ref|YP_004596748.1|	-	5.1	7.1	14.7	0.8	9.7	1.7	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
Zn_ribbon_recom	PF13408.6	gi|336253641|ref|YP_004596748.1|	-	5.2	7.7	8.6	37	4.9	0.2	3.5	2	1	1	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
zf-RING_7	PF02591.15	gi|336253641|ref|YP_004596748.1|	-	9.7	6.5	11.0	8.7	6.6	0.5	3.8	4	0	0	4	4	4	0	C4-type	zinc	ribbon	domain
ATP_bind_3	PF01171.20	gi|336253642|ref|YP_004596749.1|	-	1.8e-12	47.4	0.0	2.6e-12	46.8	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.19	gi|336253642|ref|YP_004596749.1|	-	3.5e-05	23.9	0.0	5.9e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
zn-ribbon_14	PF16503.5	gi|336253642|ref|YP_004596749.1|	-	8.9e-05	21.9	3.3	8.9e-05	21.9	3.3	3.0	4	0	0	4	4	4	1	Zinc-ribbon
NAD_synthase	PF02540.17	gi|336253642|ref|YP_004596749.1|	-	0.0015	17.7	0.0	0.0026	16.9	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
RecR	PF02132.15	gi|336253642|ref|YP_004596749.1|	-	0.037	13.6	2.1	0.037	13.6	2.1	3.2	4	0	0	4	4	4	0	RecR	protein
tRNA_Me_trans	PF03054.16	gi|336253642|ref|YP_004596749.1|	-	0.055	12.3	0.0	0.08	11.7	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
ThiI	PF02568.14	gi|336253642|ref|YP_004596749.1|	-	0.2	11.2	0.0	0.37	10.4	0.0	1.4	1	0	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
zf-ribbon_3	PF13248.6	gi|336253642|ref|YP_004596749.1|	-	1.6	8.3	5.5	15	5.1	0.2	3.0	2	0	0	2	2	2	0	zinc-ribbon	domain
Abhydrolase_6	PF12697.7	gi|336253644|ref|YP_004596751.1|	-	1.1e-05	26.2	5.0	1.4e-05	25.8	5.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.7	gi|336253644|ref|YP_004596751.1|	-	0.0007	19.4	0.0	0.00084	19.1	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
HTH_20	PF12840.7	gi|336253646|ref|YP_004596753.1|	-	0.00025	21.1	3.0	0.00043	20.3	0.6	2.4	2	1	0	2	2	2	1	Helix-turn-helix	domain
Exo_endo_phos	PF03372.23	gi|336253646|ref|YP_004596753.1|	-	0.028	13.9	0.0	0.031	13.8	0.0	1.1	1	0	0	1	1	1	0	Endonuclease/Exonuclease/phosphatase	family
HTH_10	PF04967.12	gi|336253647|ref|YP_004596754.1|	-	1.8e-14	53.3	0.0	2.8e-14	52.6	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253647|ref|YP_004596754.1|	-	2.9e-09	37.0	2.4	4.3e-09	36.4	2.4	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
ABC2_membrane_2	PF12679.7	gi|336253648|ref|YP_004596755.1|	-	5.2e-14	52.2	16.8	1e-13	51.2	16.8	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336253648|ref|YP_004596755.1|	-	1.1e-06	28.1	6.7	1.1e-06	28.1	6.7	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|336253648|ref|YP_004596755.1|	-	3.4e-05	23.5	4.9	3.4e-05	23.5	4.9	1.9	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336253648|ref|YP_004596755.1|	-	0.054	12.9	12.5	0.009	15.5	8.5	1.7	1	1	0	1	1	1	0	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|336253648|ref|YP_004596755.1|	-	2.3	8.2	11.0	1	9.3	8.0	2.0	2	1	0	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|336253649|ref|YP_004596756.1|	-	3.6e-22	79.4	0.0	4.9e-22	78.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336253649|ref|YP_004596756.1|	-	1.6e-13	51.2	1.6	7.7e-10	39.1	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|336253649|ref|YP_004596756.1|	-	0.074	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|336253649|ref|YP_004596756.1|	-	0.24	11.9	0.1	0.45	11.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
Methyltransf_25	PF13649.6	gi|336253650|ref|YP_004596757.1|	-	5.2e-17	62.3	0.5	4.1e-16	59.5	0.1	2.4	2	1	1	3	3	3	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336253650|ref|YP_004596757.1|	-	1.2e-16	61.2	0.1	3.1e-16	59.8	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253650|ref|YP_004596757.1|	-	1.2e-15	57.6	0.0	1.8e-15	57.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336253650|ref|YP_004596757.1|	-	4.7e-11	42.8	0.0	9.1e-11	41.9	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336253650|ref|YP_004596757.1|	-	3.6e-10	40.5	0.1	1.6e-09	38.4	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336253650|ref|YP_004596757.1|	-	1.4e-07	31.1	0.0	2.6e-07	30.2	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|336253650|ref|YP_004596757.1|	-	1.1e-06	28.3	0.0	2.3e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|336253650|ref|YP_004596757.1|	-	3.3e-05	23.5	0.0	6.9e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|336253650|ref|YP_004596757.1|	-	5.3e-05	23.1	0.0	9.9e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_32	PF13679.6	gi|336253650|ref|YP_004596757.1|	-	0.00046	20.2	0.0	0.00087	19.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|336253650|ref|YP_004596757.1|	-	0.0027	17.9	0.0	0.0038	17.3	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
PrmA	PF06325.13	gi|336253650|ref|YP_004596757.1|	-	0.0028	17.1	0.1	0.0041	16.5	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
CMAS	PF02353.20	gi|336253650|ref|YP_004596757.1|	-	0.031	13.6	0.0	0.049	12.9	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_29	PF03141.16	gi|336253650|ref|YP_004596757.1|	-	0.17	10.4	0.1	0.23	10.0	0.1	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
RrnaAD	PF00398.20	gi|336253650|ref|YP_004596757.1|	-	0.27	10.3	0.0	0.89	8.6	0.0	1.7	2	0	0	2	2	2	0	Ribosomal	RNA	adenine	dimethylase
AP_endonuc_2	PF01261.24	gi|336253651|ref|YP_004596758.1|	-	9e-27	93.9	1.6	2.3e-26	92.5	0.6	2.0	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
BPL_LplA_LipB	PF03099.19	gi|336253652|ref|YP_004596759.1|	-	1.3e-05	25.1	0.0	4.9e-05	23.2	0.0	2.0	2	1	0	2	2	2	1	Biotin/lipoate	A/B	protein	ligase	family
Epimerase	PF01370.21	gi|336253654|ref|YP_004596761.1|	-	2.2e-21	76.4	0.1	2.8e-19	69.5	0.1	2.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|336253654|ref|YP_004596761.1|	-	6.4e-11	41.9	0.8	0.00016	20.9	0.0	3.0	2	1	0	2	2	2	2	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|336253654|ref|YP_004596761.1|	-	7.6e-09	35.7	0.1	5.9e-08	32.8	0.1	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
GDP_Man_Dehyd	PF16363.5	gi|336253654|ref|YP_004596761.1|	-	2.9e-08	33.5	0.1	0.0023	17.4	0.1	2.9	2	2	0	2	2	2	2	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|336253654|ref|YP_004596761.1|	-	4.2e-06	26.0	0.0	0.00016	20.8	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.13	gi|336253654|ref|YP_004596761.1|	-	0.00015	21.4	0.0	0.0006	19.4	0.0	2.0	3	0	0	3	3	3	1	NmrA-like	family
Glyco_transf_4	PF13439.6	gi|336253654|ref|YP_004596761.1|	-	0.003	17.6	0.6	0.038	14.0	0.1	2.6	3	1	0	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336253654|ref|YP_004596761.1|	-	0.0079	16.7	2.0	0.051	14.0	0.6	2.6	2	2	1	3	3	3	1	Glycosyl	transferase	4-like	domain
AP_endonuc_2	PF01261.24	gi|336253655|ref|YP_004596762.1|	-	1.9e-18	66.7	1.7	3.6e-18	65.8	1.5	1.6	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UxuA	PF03786.13	gi|336253655|ref|YP_004596762.1|	-	0.00024	20.1	0.0	0.00036	19.5	0.0	1.2	1	0	0	1	1	1	1	D-mannonate	dehydratase	(UxuA)
AvrPtoB_bdg	PF16847.5	gi|336253655|ref|YP_004596762.1|	-	0.027	14.9	0.7	12	6.5	0.0	3.0	2	1	1	3	3	3	0	Avirulence	AvrPtoB,	BAK1-binding	domain
HEAT_2	PF13646.6	gi|336253656|ref|YP_004596763.1|	-	3.5e-20	72.2	16.3	1.8e-10	41.1	3.2	4.1	1	1	3	4	4	4	4	HEAT	repeats
HEAT_EZ	PF13513.6	gi|336253656|ref|YP_004596763.1|	-	1.2e-10	41.6	10.3	0.15	12.6	0.1	5.7	3	2	3	6	6	5	4	HEAT-like	repeat
HEAT	PF02985.22	gi|336253656|ref|YP_004596763.1|	-	4.5e-08	32.7	6.6	0.66	10.4	0.1	5.7	5	0	0	5	5	5	1	HEAT	repeat
Cnd1	PF12717.7	gi|336253656|ref|YP_004596763.1|	-	2.1e-07	31.1	0.0	2.5e-05	24.4	0.0	2.6	1	1	1	3	3	3	1	non-SMC	mitotic	condensation	complex	subunit	1
zinc_ribbon_2	PF13240.6	gi|336253656|ref|YP_004596763.1|	-	2.5e-05	23.8	3.0	4.8e-05	22.9	3.0	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
CLASP_N	PF12348.8	gi|336253656|ref|YP_004596763.1|	-	0.002	17.8	0.0	1.1	8.7	0.0	2.5	2	1	1	3	3	3	2	CLASP	N	terminal
Adaptin_N	PF01602.20	gi|336253656|ref|YP_004596763.1|	-	0.0045	15.6	0.0	0.039	12.5	0.0	2.0	1	1	1	2	2	2	1	Adaptin	N	terminal	region
RTP1_C1	PF10363.9	gi|336253656|ref|YP_004596763.1|	-	0.011	16.0	0.0	0.037	14.2	0.0	2.0	2	1	0	2	2	2	0	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	1
DZR	PF12773.7	gi|336253656|ref|YP_004596763.1|	-	0.012	15.6	0.9	0.024	14.6	0.9	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|336253656|ref|YP_004596763.1|	-	0.21	11.5	1.5	0.4	10.6	1.5	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.6	gi|336253656|ref|YP_004596763.1|	-	0.29	10.6	5.7	0.85	9.1	5.7	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336253656|ref|YP_004596763.1|	-	3.3	7.9	7.9	9.4	6.5	0.8	2.6	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|336253656|ref|YP_004596763.1|	-	8.1	6.8	8.7	11	6.4	1.7	2.8	1	1	1	2	2	2	0	zinc-ribbon
Peripla_BP_2	PF01497.18	gi|336253658|ref|YP_004596765.1|	-	1.3e-16	60.9	0.0	2e-16	60.3	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|336253658|ref|YP_004596765.1|	-	0.0019	18.0	1.3	0.0031	17.3	1.3	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RIO1	PF01163.22	gi|336253659|ref|YP_004596766.1|	-	1.4e-45	155.2	0.2	2e-45	154.7	0.2	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|336253659|ref|YP_004596766.1|	-	3.1e-28	97.8	0.1	6.2e-28	96.9	0.1	1.5	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|336253659|ref|YP_004596766.1|	-	6.6e-05	23.0	1.2	0.011	15.7	1.1	2.9	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|336253659|ref|YP_004596766.1|	-	0.0051	16.2	0.1	0.0088	15.4	0.1	1.4	1	1	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.11	gi|336253659|ref|YP_004596766.1|	-	0.11	12.1	0.0	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Peripla_BP_2	PF01497.18	gi|336253660|ref|YP_004596767.1|	-	2.3e-22	79.8	0.0	3.9e-22	79.0	0.0	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
Ribosomal_L15e	PF00827.17	gi|336253661|ref|YP_004596768.1|	-	9.3e-83	276.6	6.0	1.1e-82	276.4	6.0	1.0	1	0	0	1	1	1	1	Ribosomal	L15
YjbF	PF11102.8	gi|336253661|ref|YP_004596768.1|	-	0.12	12.1	0.3	0.85	9.4	0.3	2.0	1	1	0	1	1	1	0	Group	4	capsule	polysaccharide	lipoprotein	gfcB,	YjbF
Usp	PF00582.26	gi|336253662|ref|YP_004596769.1|	-	2.6e-34	118.7	0.4	3e-34	118.6	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AA_permease_N	PF08403.10	gi|336253662|ref|YP_004596769.1|	-	0.13	11.8	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	Amino	acid	permease	N-terminal
Pribosyltran	PF00156.27	gi|336253663|ref|YP_004596770.1|	-	9.5e-11	41.5	0.2	1.5e-10	40.9	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.22	gi|336253663|ref|YP_004596770.1|	-	0.00075	19.5	0.0	0.0025	17.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix
HTH_IclR	PF09339.10	gi|336253663|ref|YP_004596770.1|	-	0.064	13.1	0.0	0.18	11.6	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF4992	PF16383.5	gi|336253663|ref|YP_004596770.1|	-	0.12	11.9	0.0	16	5.0	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HTH_10	PF04967.12	gi|336253664|ref|YP_004596771.1|	-	7e-15	54.6	0.1	1.1e-14	54.0	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
VWA_3	PF13768.6	gi|336253664|ref|YP_004596771.1|	-	0.019	14.9	0.0	0.069	13.1	0.0	1.7	1	1	1	2	2	2	0	von	Willebrand	factor	type	A	domain
PEMT	PF04191.13	gi|336253665|ref|YP_004596772.1|	-	1.8e-17	63.7	0.2	1.8e-17	63.7	0.2	2.3	3	0	0	3	3	3	1	Phospholipid	methyltransferase
ICMT	PF04140.14	gi|336253665|ref|YP_004596772.1|	-	5e-05	23.6	0.1	0.0001	22.6	0.1	1.4	1	0	0	1	1	1	1	Isoprenylcysteine	carboxyl	methyltransferase	(ICMT)	family
ERG4_ERG24	PF01222.17	gi|336253665|ref|YP_004596772.1|	-	9.2e-05	21.4	0.1	0.00015	20.7	0.1	1.2	1	0	0	1	1	1	1	Ergosterol	biosynthesis	ERG4/ERG24	family
Steroid_dh	PF02544.16	gi|336253665|ref|YP_004596772.1|	-	0.0004	20.4	0.0	0.00055	20.0	0.0	1.3	1	0	0	1	1	1	1	3-oxo-5-alpha-steroid	4-dehydrogenase
DUF1295	PF06966.12	gi|336253665|ref|YP_004596772.1|	-	0.00055	19.5	0.4	0.00069	19.2	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1295)
Zincin_2	PF10103.9	gi|336253665|ref|YP_004596772.1|	-	0.13	11.5	0.1	9.1	5.4	0.0	2.1	2	0	0	2	2	2	0	Zincin-like	metallopeptidase
EzrA	PF06160.12	gi|336253666|ref|YP_004596773.1|	-	0.083	11.1	0.1	0.63	8.2	0.0	2.4	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
Fez1	PF06818.15	gi|336253666|ref|YP_004596773.1|	-	3	8.2	6.7	7.9	6.9	6.0	2.1	1	1	0	1	1	1	0	Fez1
tRNA-synt_2b	PF00587.25	gi|336253667|ref|YP_004596774.1|	-	4.2e-32	111.5	0.0	8.4e-32	110.6	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|336253667|ref|YP_004596774.1|	-	2.8e-16	59.4	0.6	2.8e-16	59.4	0.6	2.4	3	0	0	3	3	3	1	Anticodon	binding	domain
tRNA_SAD	PF07973.14	gi|336253667|ref|YP_004596774.1|	-	1.9e-13	50.3	0.0	3.5e-13	49.4	0.0	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
TGS	PF02824.21	gi|336253667|ref|YP_004596774.1|	-	1.2e-12	47.6	0.1	2.5e-12	46.6	0.1	1.6	1	0	0	1	1	1	1	TGS	domain
HGTP_anticodon2	PF12745.7	gi|336253667|ref|YP_004596774.1|	-	0.089	12.3	0.9	0.16	11.5	0.9	1.3	1	0	0	1	1	1	0	Anticodon	binding	domain	of	tRNAs
tRNA-synt_His	PF13393.6	gi|336253667|ref|YP_004596774.1|	-	0.091	12.0	0.0	0.21	10.8	0.0	1.6	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
HAD_2	PF13419.6	gi|336253668|ref|YP_004596775.1|	-	2.1e-25	89.9	0.0	3.1e-25	89.3	0.0	1.3	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336253668|ref|YP_004596775.1|	-	2.9e-15	57.1	0.1	5.6e-15	56.2	0.1	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336253668|ref|YP_004596775.1|	-	1.6e-12	47.3	0.1	6.4e-12	45.4	0.1	1.9	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|336253668|ref|YP_004596775.1|	-	0.0028	17.8	0.0	0.01	15.9	0.0	1.8	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Acid_PPase	PF12689.7	gi|336253668|ref|YP_004596775.1|	-	0.0041	17.0	0.0	1.5	8.6	0.0	2.2	2	0	0	2	2	2	2	Acid	Phosphatase
HAD	PF12710.7	gi|336253668|ref|YP_004596775.1|	-	0.008	16.6	1.0	0.074	13.4	1.0	2.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Acid_phosphat_B	PF03767.14	gi|336253668|ref|YP_004596775.1|	-	0.018	14.6	0.0	1.4	8.5	0.0	2.2	2	0	0	2	2	2	0	HAD	superfamily,	subfamily	IIIB	(Acid	phosphatase)
Aldolase_II	PF00596.21	gi|336253669|ref|YP_004596776.1|	-	1.7e-42	145.5	0.2	2e-42	145.2	0.2	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
NUDIX	PF00293.28	gi|336253670|ref|YP_004596777.1|	-	1.3e-17	64.0	0.2	1.8e-17	63.6	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
Pribosyltran	PF00156.27	gi|336253671|ref|YP_004596778.1|	-	7e-16	58.1	1.3	1e-15	57.6	1.3	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|336253671|ref|YP_004596778.1|	-	0.00049	19.6	0.0	0.00061	19.3	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|336253671|ref|YP_004596778.1|	-	0.019	14.5	0.2	0.028	13.9	0.2	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
Abhydrolase_3	PF07859.13	gi|336253672|ref|YP_004596779.1|	-	1.3e-75	253.8	0.3	1.7e-75	253.5	0.3	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|336253672|ref|YP_004596779.1|	-	1.1e-07	31.2	0.0	3.6e-07	29.4	0.0	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_6	PF12697.7	gi|336253672|ref|YP_004596779.1|	-	0.0011	19.6	10.0	0.002	18.8	10.0	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|336253672|ref|YP_004596779.1|	-	0.0017	17.9	0.0	0.028	13.9	0.0	2.1	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Say1_Mug180	PF10340.9	gi|336253672|ref|YP_004596779.1|	-	0.011	14.7	0.0	0.016	14.1	0.0	1.1	1	0	0	1	1	1	0	Steryl	acetyl	hydrolase
DLH	PF01738.18	gi|336253672|ref|YP_004596779.1|	-	0.055	13.0	0.0	1.6	8.2	0.0	2.7	3	0	0	3	3	3	0	Dienelactone	hydrolase	family
AXE1	PF05448.12	gi|336253672|ref|YP_004596779.1|	-	0.084	11.5	0.1	0.31	9.7	0.0	1.8	1	1	1	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
Chlorophyllase2	PF12740.7	gi|336253672|ref|YP_004596779.1|	-	0.085	11.7	0.0	0.14	11.0	0.0	1.3	1	0	0	1	1	1	0	Chlorophyllase	enzyme
CarS-like	PF01864.17	gi|336253673|ref|YP_004596780.1|	-	5.5e-47	160.0	0.6	6.7e-47	159.7	0.6	1.0	1	0	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|336253673|ref|YP_004596780.1|	-	1.9e-06	27.8	0.7	1.9e-06	27.8	0.7	1.6	1	1	0	1	1	1	1	Cytidylyltransferase	family
Gly-zipper_YMGG	PF13441.6	gi|336253673|ref|YP_004596780.1|	-	0.31	10.8	7.8	2.6	7.9	0.7	2.4	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
Pro_dh	PF01619.18	gi|336253674|ref|YP_004596781.1|	-	2.1e-24	86.6	0.0	3.7e-24	85.8	0.0	1.4	1	1	0	1	1	1	1	Proline	dehydrogenase
PqqD	PF05402.12	gi|336253674|ref|YP_004596781.1|	-	0.15	12.4	0.7	1.1	9.6	0.0	2.7	3	0	0	3	3	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
DUF502	PF04367.13	gi|336253675|ref|YP_004596782.1|	-	5.4e-19	68.0	0.2	8.7e-19	67.4	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF502)
DoxX	PF07681.12	gi|336253676|ref|YP_004596783.1|	-	1.4e-05	25.6	0.4	2.1e-05	25.0	0.4	1.3	1	0	0	1	1	1	1	DoxX
HR_lesion	PF05514.11	gi|336253676|ref|YP_004596783.1|	-	2.7e-05	24.4	0.0	0.00059	20.0	0.0	2.0	1	1	0	2	2	2	1	HR-like	lesion-inducing
Aminotran_4	PF01063.19	gi|336253677|ref|YP_004596784.1|	-	1.8e-49	168.6	0.0	2.2e-49	168.4	0.0	1.1	1	0	0	1	1	1	1	Amino-transferase	class	IV
HTH_24	PF13412.6	gi|336253678|ref|YP_004596785.1|	-	1.5e-11	43.7	0.0	4.5e-06	26.1	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336253678|ref|YP_004596785.1|	-	3.1e-11	43.2	1.0	1.2e-07	31.7	0.2	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336253678|ref|YP_004596785.1|	-	3.6e-08	33.2	0.8	1.7e-05	24.6	0.2	2.4	2	0	0	2	2	2	2	MarR	family
HTH_5	PF01022.20	gi|336253678|ref|YP_004596785.1|	-	4e-07	29.8	0.0	1.9e-05	24.4	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|336253678|ref|YP_004596785.1|	-	0.00025	20.9	0.0	0.0015	18.4	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|336253678|ref|YP_004596785.1|	-	0.00081	19.8	0.1	0.0033	17.9	0.1	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|336253678|ref|YP_004596785.1|	-	0.0025	17.7	0.0	0.016	15.1	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336253678|ref|YP_004596785.1|	-	0.003	17.3	0.0	0.0072	16.1	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
RusA	PF05866.11	gi|336253678|ref|YP_004596785.1|	-	0.0076	16.8	0.0	1.1	9.9	0.0	2.2	2	0	0	2	2	2	1	Endodeoxyribonuclease	RusA
RP-C	PF03428.13	gi|336253678|ref|YP_004596785.1|	-	0.011	15.4	0.0	0.2	11.3	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
Penicillinase_R	PF03965.16	gi|336253678|ref|YP_004596785.1|	-	0.012	16.0	0.0	1.2	9.5	0.0	2.2	1	1	0	2	2	2	0	Penicillinase	repressor
HTH_30	PF13556.6	gi|336253678|ref|YP_004596785.1|	-	0.015	15.1	0.1	0.041	13.7	0.1	1.8	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_10	PF04967.12	gi|336253678|ref|YP_004596785.1|	-	0.018	14.9	0.0	0.055	13.3	0.0	1.8	2	0	0	2	2	2	0	HTH	DNA	binding	domain
GPP34	PF05719.11	gi|336253678|ref|YP_004596785.1|	-	0.06	13.4	1.0	0.28	11.2	0.2	1.9	1	1	1	2	2	2	0	Golgi	phosphoprotein	3	(GPP34)
HTH_34	PF13601.6	gi|336253678|ref|YP_004596785.1|	-	0.12	12.6	0.0	0.82	9.9	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
BLACT_WH	PF17778.1	gi|336253678|ref|YP_004596785.1|	-	0.14	12.1	0.0	1.1	9.3	0.0	2.2	2	0	0	2	2	2	0	Beta-lactamase	associated	winged	helix	domain
RPA_C	PF08784.11	gi|336253678|ref|YP_004596785.1|	-	0.17	12.5	0.0	0.64	10.7	0.0	1.8	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
7TMR-DISM_7TM	PF07695.11	gi|336253679|ref|YP_004596786.1|	-	0.04	13.8	4.7	0.048	13.6	4.7	1.1	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
ABC2_membrane_4	PF12730.7	gi|336253679|ref|YP_004596786.1|	-	0.063	13.2	3.1	0.08	12.9	3.1	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3481	PF11980.8	gi|336253679|ref|YP_004596786.1|	-	0.079	12.7	4.3	0.27	11.0	2.2	2.3	2	1	1	3	3	3	0	C-terminal	domain	of	neuropilin	glycoprotein
SUR7	PF06687.12	gi|336253679|ref|YP_004596786.1|	-	0.14	11.8	3.4	0.16	11.5	3.4	1.2	1	0	0	1	1	1	0	SUR7/PalI	family
TctB	PF07331.11	gi|336253679|ref|YP_004596786.1|	-	0.17	12.2	5.4	0.25	11.6	5.4	1.3	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF2530	PF10745.9	gi|336253679|ref|YP_004596786.1|	-	0.45	10.8	6.6	0.34	11.2	4.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
DHBP_synthase	PF00926.19	gi|336253680|ref|YP_004596787.1|	-	1.1e-58	197.9	0.1	1.3e-58	197.7	0.1	1.1	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
CTP-dep_RFKase	PF01982.16	gi|336253681|ref|YP_004596788.1|	-	4.1e-48	162.5	0.0	6.2e-48	161.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_20	PF12840.7	gi|336253681|ref|YP_004596788.1|	-	1.4e-07	31.4	1.3	2.4e-07	30.7	1.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336253681|ref|YP_004596788.1|	-	1.6e-05	24.4	0.2	2.7e-05	23.6	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336253681|ref|YP_004596788.1|	-	2.9e-05	23.9	0.5	6e-05	22.9	0.5	1.5	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336253681|ref|YP_004596788.1|	-	9.1e-05	22.2	0.7	9.1e-05	22.2	0.7	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336253681|ref|YP_004596788.1|	-	0.00053	19.9	0.1	0.0011	18.9	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|336253681|ref|YP_004596788.1|	-	0.0011	18.9	0.1	0.0025	17.7	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|336253681|ref|YP_004596788.1|	-	0.0016	18.3	0.1	0.0028	17.6	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
Fe_dep_repress	PF01325.19	gi|336253681|ref|YP_004596788.1|	-	0.0025	18.0	0.0	0.0056	16.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.6	gi|336253681|ref|YP_004596788.1|	-	0.0031	18.0	0.1	0.0049	17.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|336253681|ref|YP_004596788.1|	-	0.011	15.4	0.1	0.02	14.6	0.1	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_1	PF00126.27	gi|336253681|ref|YP_004596788.1|	-	0.017	15.0	0.1	0.037	14.0	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_IclR	PF09339.10	gi|336253681|ref|YP_004596788.1|	-	0.093	12.6	0.9	0.15	11.9	0.9	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|336253681|ref|YP_004596788.1|	-	0.17	11.5	0.4	0.33	10.6	0.4	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF4423	PF14394.6	gi|336253681|ref|YP_004596788.1|	-	0.21	11.3	0.0	0.3	10.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
MarR	PF01047.22	gi|336253683|ref|YP_004596790.1|	-	4.3e-08	33.0	0.0	9.5e-08	31.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336253683|ref|YP_004596790.1|	-	6.1e-07	29.2	0.0	1.1e-06	28.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336253683|ref|YP_004596790.1|	-	7.2e-07	29.0	0.4	4.3e-06	26.5	0.2	2.2	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336253683|ref|YP_004596790.1|	-	1.6e-06	27.6	0.0	2.6e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336253683|ref|YP_004596790.1|	-	2.1e-06	27.5	0.0	4.5e-06	26.4	0.0	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|336253683|ref|YP_004596790.1|	-	1.4e-05	24.8	0.3	8.3e-05	22.3	0.1	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|336253683|ref|YP_004596790.1|	-	2.2e-05	24.0	0.1	4.9e-05	22.9	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
DUF1724	PF08350.10	gi|336253683|ref|YP_004596790.1|	-	0.0005	20.2	0.0	0.00081	19.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_11	PF08279.12	gi|336253683|ref|YP_004596790.1|	-	0.00085	19.2	0.0	0.0019	18.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|336253683|ref|YP_004596790.1|	-	0.0013	18.8	0.3	0.0025	17.8	0.3	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|336253683|ref|YP_004596790.1|	-	0.0019	18.7	0.0	0.0035	17.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|336253683|ref|YP_004596790.1|	-	0.0024	17.8	0.1	0.0046	16.9	0.1	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|336253683|ref|YP_004596790.1|	-	0.0035	17.7	0.0	0.006	16.9	0.0	1.4	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_34	PF13601.6	gi|336253683|ref|YP_004596790.1|	-	0.013	15.6	0.0	0.021	15.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|336253683|ref|YP_004596790.1|	-	0.031	14.5	0.0	0.069	13.4	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Ribosomal_S19e	PF01090.19	gi|336253683|ref|YP_004596790.1|	-	0.07	12.8	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HTH_36	PF13730.6	gi|336253683|ref|YP_004596790.1|	-	0.12	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|336253683|ref|YP_004596790.1|	-	0.12	12.1	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
RepL	PF05732.11	gi|336253683|ref|YP_004596790.1|	-	0.28	10.6	0.0	0.44	9.9	0.0	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_20	PF12840.7	gi|336253684|ref|YP_004596791.1|	-	0.025	14.6	0.7	0.22	11.6	0.7	2.3	1	1	0	1	1	1	0	Helix-turn-helix	domain
Wyosine_form	PF08608.12	gi|336253685|ref|YP_004596792.1|	-	3.4e-20	72.2	0.1	2.3e-19	69.5	0.0	2.3	2	0	0	2	2	2	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|336253685|ref|YP_004596792.1|	-	1e-19	71.5	1.3	3.5e-19	69.8	1.3	1.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
DUF4831	PF16115.5	gi|336253686|ref|YP_004596793.1|	-	0.0041	16.2	0.5	2.3	7.2	0.0	2.6	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4831)
DUF3370	PF11850.8	gi|336253686|ref|YP_004596793.1|	-	0.017	14.1	5.7	1.4	7.7	0.1	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3370)
CXCR4_N	PF12109.8	gi|336253686|ref|YP_004596793.1|	-	1.2	9.4	8.5	33	4.8	0.4	3.5	3	0	0	3	3	3	0	CXCR4	Chemokine	receptor	N	terminal
Phycoerythr_ab	PF02972.14	gi|336253686|ref|YP_004596793.1|	-	1.6	8.6	4.5	30	4.5	0.2	3.0	3	0	0	3	3	3	0	Phycoerythrin,	alpha/beta	chain
HTH_20	PF12840.7	gi|336253687|ref|YP_004596794.1|	-	1e-06	28.7	0.1	3.1e-06	27.2	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|336253687|ref|YP_004596794.1|	-	3.9e-05	23.5	0.0	8e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336253687|ref|YP_004596794.1|	-	0.00013	21.8	0.1	0.00025	20.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|336253687|ref|YP_004596794.1|	-	0.0047	16.6	0.5	0.0088	15.8	0.5	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|336253687|ref|YP_004596794.1|	-	0.0054	16.9	0.0	0.0096	16.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|336253687|ref|YP_004596794.1|	-	0.0054	16.4	0.2	0.013	15.1	0.2	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HxlR	PF01638.17	gi|336253687|ref|YP_004596794.1|	-	0.016	15.0	0.2	0.04	13.8	0.2	1.6	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|336253687|ref|YP_004596794.1|	-	0.03	14.2	0.1	0.056	13.3	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336253687|ref|YP_004596794.1|	-	0.033	14.1	0.3	0.065	13.2	0.3	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_27	PF13463.6	gi|336253687|ref|YP_004596794.1|	-	0.12	12.9	0.1	0.28	11.7	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|336253687|ref|YP_004596794.1|	-	0.17	11.5	0.1	1.3	8.7	0.1	2.2	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Ribosomal_L12_N	PF16320.5	gi|336253687|ref|YP_004596794.1|	-	0.2	11.4	2.1	37	4.1	0.0	3.3	3	0	0	3	3	3	0	Ribosomal	protein	L7/L12	dimerisation	domain
DUF1772	PF08592.11	gi|336253688|ref|YP_004596795.1|	-	0.029	14.7	0.1	0.034	14.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
HIG_1_N	PF04588.13	gi|336253688|ref|YP_004596795.1|	-	2.7	8.3	5.4	0.46	10.8	0.5	2.0	1	1	1	2	2	2	0	Hypoxia	induced	protein	conserved	region
Fe-ADH	PF00465.19	gi|336253689|ref|YP_004596796.1|	-	9.2e-118	393.2	4.8	1e-117	393.0	4.8	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|336253689|ref|YP_004596796.1|	-	2.8e-16	60.0	2.8	5.5e-12	45.9	0.4	2.1	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
Peripla_BP_6	PF13458.6	gi|336253689|ref|YP_004596796.1|	-	0.0025	17.5	0.6	0.0048	16.6	0.6	1.5	1	0	0	1	1	1	1	Periplasmic	binding	protein
Borrelia_P83	PF05262.11	gi|336253689|ref|YP_004596796.1|	-	0.12	10.9	0.0	0.21	10.0	0.0	1.3	1	0	0	1	1	1	0	Borrelia	P83/100	protein
Putative_PNPOx	PF01243.20	gi|336253691|ref|YP_004596798.1|	-	0.006	16.8	0.0	0.0087	16.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Hydrolase_3	PF08282.12	gi|336253692|ref|YP_004596799.1|	-	7.6e-24	84.8	0.0	1.5e-16	60.9	0.1	2.0	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336253692|ref|YP_004596799.1|	-	4.2e-08	33.7	0.4	4.3e-07	30.4	0.1	2.3	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|336253692|ref|YP_004596799.1|	-	8.3e-06	25.5	0.0	0.00016	21.3	0.1	2.0	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.7	gi|336253692|ref|YP_004596799.1|	-	4.9e-05	23.8	4.4	0.036	14.5	0.1	3.2	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
SBP_bac_8	PF13416.6	gi|336253693|ref|YP_004596800.1|	-	8.7e-43	147.1	1.6	1.1e-42	146.8	1.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336253693|ref|YP_004596800.1|	-	1.4e-32	114.0	2.8	1.7e-32	113.7	2.8	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
LGFP	PF08310.11	gi|336253693|ref|YP_004596800.1|	-	0.0061	17.1	0.0	0.022	15.3	0.0	2.0	1	0	0	1	1	1	1	LGFP	repeat
SBP_bac_11	PF13531.6	gi|336253693|ref|YP_004596800.1|	-	0.0069	16.1	0.0	0.09	12.5	0.0	2.6	3	0	0	3	3	3	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|336253693|ref|YP_004596800.1|	-	0.03	13.7	0.0	0.48	9.8	0.0	2.2	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|336253694|ref|YP_004596801.1|	-	3.2e-17	62.9	11.8	3.2e-17	62.9	11.8	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SKG6	PF08693.10	gi|336253694|ref|YP_004596801.1|	-	1	8.8	8.0	0.065	12.7	1.0	2.7	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
BPD_transp_1	PF00528.22	gi|336253695|ref|YP_004596802.1|	-	5.3e-13	49.1	17.7	5.3e-13	49.1	17.7	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DDE_Tnp_IS66_C	PF13817.6	gi|336253695|ref|YP_004596802.1|	-	0.0066	16.6	0.0	0.013	15.7	0.0	1.5	1	0	0	1	1	1	1	IS66	C-terminal	element
UPF0182	PF03699.13	gi|336253695|ref|YP_004596802.1|	-	0.13	10.4	3.8	0.13	10.3	3.8	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0182)
ABC_tran	PF00005.27	gi|336253696|ref|YP_004596803.1|	-	1e-31	110.3	0.0	1.5e-31	109.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336253696|ref|YP_004596803.1|	-	2.1e-11	44.4	0.3	2.4e-10	41.1	0.2	2.8	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|336253696|ref|YP_004596803.1|	-	2.9e-08	33.7	1.6	2e-07	31.1	0.5	2.8	2	1	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|336253696|ref|YP_004596803.1|	-	5.7e-07	29.6	0.0	0.0086	15.9	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|336253696|ref|YP_004596803.1|	-	1.4e-06	28.7	3.2	0.00012	22.5	0.1	3.4	4	0	0	4	4	3	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|336253696|ref|YP_004596803.1|	-	3.2e-05	23.5	0.0	6.3e-05	22.5	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336253696|ref|YP_004596803.1|	-	0.00015	22.2	0.3	0.00039	20.8	0.3	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|336253696|ref|YP_004596803.1|	-	0.00029	20.8	0.0	0.00044	20.2	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|336253696|ref|YP_004596803.1|	-	0.0024	18.2	0.3	0.0045	17.3	0.3	1.6	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336253696|ref|YP_004596803.1|	-	0.028	14.3	0.0	0.052	13.5	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|336253696|ref|YP_004596803.1|	-	0.037	14.5	0.0	0.067	13.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336253696|ref|YP_004596803.1|	-	0.053	13.3	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
CRISPR_Cse2	PF09485.10	gi|336253696|ref|YP_004596803.1|	-	0.055	14.0	0.0	0.099	13.2	0.0	1.4	1	0	0	1	1	1	0	CRISPR-associated	protein	Cse2	(CRISPR_cse2)
MMR_HSR1	PF01926.23	gi|336253696|ref|YP_004596803.1|	-	0.061	13.4	0.0	0.16	12.1	0.0	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_27	PF13514.6	gi|336253696|ref|YP_004596803.1|	-	0.15	11.6	0.0	0.32	10.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336253696|ref|YP_004596803.1|	-	0.17	12.0	0.3	0.42	10.8	0.3	1.8	1	1	0	1	1	1	0	AAA	domain
G-alpha	PF00503.20	gi|336253696|ref|YP_004596803.1|	-	0.29	10.2	0.0	0.36	9.9	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
GDPD	PF03009.17	gi|336253697|ref|YP_004596804.1|	-	1.4e-29	103.6	0.0	6.7e-19	68.6	0.0	2.0	2	0	0	2	2	2	2	Glycerophosphoryl	diester	phosphodiesterase	family
PAP2	PF01569.21	gi|336253698|ref|YP_004596805.1|	-	0.01	15.6	0.5	0.01	15.6	0.5	2.3	2	1	0	2	2	2	0	PAP2	superfamily
RTX	PF02382.15	gi|336253698|ref|YP_004596805.1|	-	0.042	13.5	2.0	0.082	12.6	2.0	1.4	1	0	0	1	1	1	0	N-terminal	domain	in	RTX	protein
FGGY_N	PF00370.21	gi|336253699|ref|YP_004596806.1|	-	1.2e-80	270.6	0.0	1.6e-80	270.2	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|336253699|ref|YP_004596806.1|	-	9.6e-59	198.4	0.3	2.3e-58	197.2	0.2	1.6	2	0	0	2	2	2	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|336253699|ref|YP_004596806.1|	-	0.00037	20.1	0.1	0.0017	17.9	0.0	1.9	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
DAO	PF01266.24	gi|336253700|ref|YP_004596807.1|	-	4.4e-54	184.4	1.7	6.2e-54	183.9	1.7	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|336253700|ref|YP_004596807.1|	-	4.8e-11	42.8	3.6	4.8e-11	42.8	3.6	2.3	2	0	0	2	2	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.14	gi|336253700|ref|YP_004596807.1|	-	1e-07	31.5	0.2	8.7e-07	28.4	0.2	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|336253700|ref|YP_004596807.1|	-	1.9e-07	30.5	3.0	9.1e-07	28.3	2.9	1.9	1	1	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|336253700|ref|YP_004596807.1|	-	2.6e-07	30.2	6.5	3.1e-06	26.7	6.5	2.1	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|336253700|ref|YP_004596807.1|	-	0.00018	22.0	1.4	0.00081	19.9	0.5	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253700|ref|YP_004596807.1|	-	0.0022	18.2	0.3	0.0078	16.4	0.3	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|336253700|ref|YP_004596807.1|	-	0.0059	15.9	0.3	0.01	15.1	0.0	1.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|336253700|ref|YP_004596807.1|	-	0.013	15.4	0.2	0.021	14.7	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|336253700|ref|YP_004596807.1|	-	0.014	14.5	0.9	0.039	13.0	0.2	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|336253700|ref|YP_004596807.1|	-	0.02	14.5	0.2	0.038	13.6	0.2	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DAO_C	PF16901.5	gi|336253700|ref|YP_004596807.1|	-	0.035	14.0	0.0	0.071	13.0	0.0	1.6	1	0	0	1	1	1	0	C-terminal	domain	of	alpha-glycerophosphate	oxidase
FAD_oxidored	PF12831.7	gi|336253700|ref|YP_004596807.1|	-	0.051	12.9	6.1	0.54	9.5	6.2	2.1	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|336253700|ref|YP_004596807.1|	-	0.056	12.5	0.4	0.092	11.8	0.4	1.3	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
YbjQ_1	PF01906.17	gi|336253700|ref|YP_004596807.1|	-	0.062	13.9	0.0	0.16	12.6	0.0	1.6	1	0	0	1	1	1	0	Putative	heavy-metal-binding
DUF3606	PF12244.8	gi|336253700|ref|YP_004596807.1|	-	0.071	13.1	0.0	0.25	11.3	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3606)
Thi4	PF01946.17	gi|336253700|ref|YP_004596807.1|	-	0.072	12.3	0.1	0.16	11.2	0.1	1.5	1	0	0	1	1	1	0	Thi4	family
HI0933_like	PF03486.14	gi|336253700|ref|YP_004596807.1|	-	0.091	11.4	0.5	0.2	10.3	0.2	1.7	2	0	0	2	2	2	0	HI0933-like	protein
NAD_binding_7	PF13241.6	gi|336253700|ref|YP_004596807.1|	-	0.15	12.5	0.0	0.29	11.6	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
FAD_binding_2	PF00890.24	gi|336253701|ref|YP_004596808.1|	-	5.6e-37	127.8	3.1	6.6e-37	127.6	3.1	1.0	1	0	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|336253701|ref|YP_004596808.1|	-	8.9e-08	31.6	0.1	8.9e-08	31.6	0.1	2.1	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.14	gi|336253701|ref|YP_004596808.1|	-	1.7e-06	27.5	0.2	0.0003	20.1	0.0	2.7	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|336253701|ref|YP_004596808.1|	-	2.5e-06	27.1	2.7	4.4e-06	26.3	2.0	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|336253701|ref|YP_004596808.1|	-	1.6e-05	24.7	7.9	0.00011	21.9	7.9	2.1	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336253701|ref|YP_004596808.1|	-	1.9e-05	24.1	0.6	0.00014	21.2	0.6	2.0	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|336253701|ref|YP_004596808.1|	-	2.1e-05	23.4	0.3	2.1e-05	23.4	0.3	2.0	3	0	0	3	3	3	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|336253701|ref|YP_004596808.1|	-	8.5e-05	23.0	0.2	0.0041	17.6	0.3	2.6	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|336253701|ref|YP_004596808.1|	-	0.0006	19.2	1.0	0.0011	18.3	1.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|336253701|ref|YP_004596808.1|	-	0.013	15.4	0.2	0.022	14.6	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.14	gi|336253701|ref|YP_004596808.1|	-	0.077	11.8	0.3	0.077	11.8	0.3	1.4	2	0	0	2	2	2	0	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|336253701|ref|YP_004596808.1|	-	0.11	11.7	0.2	0.24	10.6	0.2	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336253701|ref|YP_004596808.1|	-	0.52	10.6	5.4	0.13	12.5	0.8	2.4	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
CCG	PF02754.16	gi|336253702|ref|YP_004596809.1|	-	7e-23	80.7	0.9	3.7e-11	43.1	0.1	2.7	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|336253702|ref|YP_004596809.1|	-	1.8e-08	34.7	8.1	1.8e-08	34.7	8.1	3.0	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336253702|ref|YP_004596809.1|	-	4.9e-06	27.0	9.0	4.9e-06	27.0	9.0	3.0	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336253702|ref|YP_004596809.1|	-	0.013	15.7	16.7	0.019	15.1	12.9	3.1	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|336253702|ref|YP_004596809.1|	-	0.016	14.2	0.0	0.029	13.3	0.0	1.3	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
Fer4_10	PF13237.6	gi|336253702|ref|YP_004596809.1|	-	0.017	15.2	18.1	0.034	14.2	13.1	3.3	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336253702|ref|YP_004596809.1|	-	0.031	14.9	20.0	0.061	13.9	15.0	3.2	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
DUF3390	PF11870.8	gi|336253702|ref|YP_004596809.1|	-	0.049	14.0	0.1	0.088	13.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3390)
zf-CSL	PF05207.13	gi|336253702|ref|YP_004596809.1|	-	0.063	13.0	12.3	0.2	11.4	0.0	4.1	3	1	0	3	3	2	0	CSL	zinc	finger
Fer4_16	PF13484.6	gi|336253702|ref|YP_004596809.1|	-	0.57	11.1	15.6	0.32	12.0	10.6	3.1	3	1	1	4	4	4	0	4Fe-4S	double	cluster	binding	domain
ETF_QO	PF05187.13	gi|336253702|ref|YP_004596809.1|	-	1.3	9.2	5.0	0.38	10.9	0.3	2.4	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4	PF00037.27	gi|336253702|ref|YP_004596809.1|	-	2.1	8.3	15.2	1.4	8.8	3.3	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336253702|ref|YP_004596809.1|	-	2.6	8.3	13.2	0.75	10.0	0.8	3.0	4	0	0	4	4	3	0	4Fe-4S	dicluster	domain
AAA_16	PF13191.6	gi|336253703|ref|YP_004596810.1|	-	1.6e-09	38.4	0.7	6.2e-09	36.5	0.1	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336253703|ref|YP_004596810.1|	-	2.9e-05	24.4	0.0	8.3e-05	22.9	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
HTH_Crp_2	PF13545.6	gi|336253703|ref|YP_004596810.1|	-	0.0016	18.4	0.1	0.0037	17.2	0.1	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336253703|ref|YP_004596810.1|	-	0.0026	17.5	0.0	0.0084	15.9	0.0	2.0	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|336253703|ref|YP_004596810.1|	-	0.0066	16.3	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
DprA_WH	PF17782.1	gi|336253703|ref|YP_004596810.1|	-	0.0077	16.3	3.5	0.12	12.6	0.5	3.4	2	1	1	3	3	3	1	DprA	winged	helix	domain
HTH_24	PF13412.6	gi|336253703|ref|YP_004596810.1|	-	0.013	15.0	0.0	0.03	13.9	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.12	gi|336253703|ref|YP_004596810.1|	-	0.018	15.4	0.0	0.035	14.5	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
TrmB	PF01978.19	gi|336253703|ref|YP_004596810.1|	-	0.027	14.4	0.0	0.059	13.3	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336253703|ref|YP_004596810.1|	-	0.028	14.3	3.5	0.035	14.0	0.6	2.6	2	0	0	2	2	2	0	MarR	family
Guanylate_kin	PF00625.21	gi|336253703|ref|YP_004596810.1|	-	0.095	12.4	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Guanylate	kinase
TmoB	PF06234.12	gi|336253703|ref|YP_004596810.1|	-	0.15	12.2	2.0	4.4	7.5	0.7	3.0	2	2	0	2	2	2	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
YdjM	PF04307.14	gi|336253706|ref|YP_004596813.1|	-	4.6e-10	39.1	10.0	7.9e-10	38.3	10.0	1.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Rick_17kDa_Anti	PF05433.15	gi|336253706|ref|YP_004596813.1|	-	0.013	15.3	1.1	0.013	15.3	1.1	2.2	3	0	0	3	3	3	0	Glycine	zipper	2TM	domain
DUF4229	PF14012.6	gi|336253706|ref|YP_004596813.1|	-	0.044	13.9	0.1	0.044	13.9	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4229)
tRNA_anti-codon	PF01336.25	gi|336253707|ref|YP_004596814.1|	-	0.11	12.5	0.1	0.18	11.8	0.1	1.4	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
VanZ	PF04892.12	gi|336253708|ref|YP_004596815.1|	-	3.6e-06	27.6	0.2	5.3e-06	27.1	0.2	1.3	1	0	0	1	1	1	1	VanZ	like	family
DUF1072	PF06380.11	gi|336253708|ref|YP_004596815.1|	-	0.15	11.9	2.3	0.54	10.2	0.1	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1072)
Polysacc_deac_1	PF01522.21	gi|336253709|ref|YP_004596816.1|	-	1.4e-22	79.9	0.0	2.5e-22	79.1	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
PIN	PF01850.21	gi|336253710|ref|YP_004596817.1|	-	1.6e-08	35.1	2.1	1.9e-08	34.8	2.1	1.0	1	0	0	1	1	1	1	PIN	domain
SQS_PSY	PF00494.19	gi|336253711|ref|YP_004596818.1|	-	0.031	13.8	0.1	0.036	13.6	0.1	1.1	1	0	0	1	1	1	0	Squalene/phytoene	synthase
Aldo_ket_red	PF00248.21	gi|336253712|ref|YP_004596819.1|	-	6.8e-69	232.3	0.0	8.1e-69	232.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Sigma70_r3	PF04539.16	gi|336253713|ref|YP_004596820.1|	-	0.0031	17.6	0.5	0.0034	17.5	0.5	1.2	1	0	0	1	1	1	1	Sigma-70	region	3
HTH_15	PF12324.8	gi|336253713|ref|YP_004596820.1|	-	0.0076	16.2	0.3	0.0085	16.0	0.3	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_26	PF13443.6	gi|336253713|ref|YP_004596820.1|	-	0.13	12.7	0.0	0.16	12.4	0.0	1.1	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
CBM_4_9	PF02018.17	gi|336253715|ref|YP_004596822.1|	-	0.014	15.7	0.2	0.019	15.2	0.2	1.3	1	0	0	1	1	1	0	Carbohydrate	binding	domain
Glycos_transf_2	PF00535.26	gi|336253717|ref|YP_004596824.1|	-	6.2e-24	84.7	0.2	9.1e-24	84.2	0.2	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253717|ref|YP_004596824.1|	-	5.3e-18	65.8	0.2	1.1e-17	64.8	0.2	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|336253717|ref|YP_004596824.1|	-	2.6e-09	37.0	0.0	3.2e-09	36.7	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|336253717|ref|YP_004596824.1|	-	0.00034	20.6	0.3	0.0016	18.4	0.3	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
PD40	PF07676.12	gi|336253718|ref|YP_004596825.1|	-	0.0022	17.9	1.0	0.76	9.8	0.1	3.7	4	0	0	4	4	4	2	WD40-like	Beta	Propeller	Repeat
Glyco_trans_1_4	PF13692.6	gi|336253719|ref|YP_004596826.1|	-	1.6e-17	64.2	0.0	2.9e-17	63.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|336253719|ref|YP_004596826.1|	-	6.6e-16	58.3	0.0	1e-15	57.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336253719|ref|YP_004596826.1|	-	4.1e-15	56.2	0.0	6.4e-15	55.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336253719|ref|YP_004596826.1|	-	4.3e-06	27.3	0.0	6.6e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|336253719|ref|YP_004596826.1|	-	0.0079	16.2	0.0	0.016	15.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|336253719|ref|YP_004596826.1|	-	0.096	13.1	0.0	0.19	12.2	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Cytochrom_B_C	PF00032.17	gi|336253720|ref|YP_004596827.1|	-	2.5	8.5	16.2	0.15	12.3	5.1	3.4	3	1	0	3	3	3	0	Cytochrome	b(C-terminal)/b6/petD
Glycos_transf_1	PF00534.20	gi|336253721|ref|YP_004596828.1|	-	2.1e-37	128.3	0.0	3.5e-37	127.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336253721|ref|YP_004596828.1|	-	2.5e-30	105.6	0.0	5.2e-30	104.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336253721|ref|YP_004596828.1|	-	3.8e-20	72.6	0.0	6.3e-20	71.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336253721|ref|YP_004596828.1|	-	3.2e-08	34.2	0.0	5.3e-08	33.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336253721|ref|YP_004596828.1|	-	1.6e-07	31.7	0.0	2.9e-07	30.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_5	PF16994.5	gi|336253721|ref|YP_004596828.1|	-	0.0007	19.2	0.1	0.0011	18.6	0.1	1.4	1	0	0	1	1	1	1	Glycosyl-transferase	family	4
Type_ISP_C	PF18135.1	gi|336253721|ref|YP_004596828.1|	-	0.015	14.3	0.0	0.024	13.7	0.0	1.4	1	0	0	1	1	1	0	Type	ISP	C-terminal	specificity	domain
PhdYeFM_antitox	PF02604.19	gi|336253721|ref|YP_004596828.1|	-	0.029	14.2	0.0	0.094	12.5	0.0	1.9	1	0	0	1	1	1	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
DUF3732	PF12532.8	gi|336253721|ref|YP_004596828.1|	-	0.033	13.8	0.2	0.31	10.6	0.0	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3732)
Glyco_trans_4_2	PF13477.6	gi|336253721|ref|YP_004596828.1|	-	0.13	12.3	0.3	0.31	11.1	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
YjeF_N	PF03853.15	gi|336253721|ref|YP_004596828.1|	-	0.19	11.6	0.1	17	5.3	0.0	2.5	2	1	0	2	2	2	0	YjeF-related	protein	N-terminus
Glycos_transf_1	PF00534.20	gi|336253722|ref|YP_004596829.1|	-	1.8e-27	96.0	0.0	3.1e-27	95.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336253722|ref|YP_004596829.1|	-	1.7e-21	77.1	0.0	2.7e-21	76.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336253722|ref|YP_004596829.1|	-	9.5e-10	38.7	0.2	0.00045	20.3	0.0	2.5	3	0	0	3	3	3	2	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336253722|ref|YP_004596829.1|	-	5.1e-06	27.0	0.0	1.1e-05	25.9	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336253722|ref|YP_004596829.1|	-	0.00091	19.6	0.0	0.0017	18.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Polysacc_synt_C	PF14667.6	gi|336253723|ref|YP_004596830.1|	-	8.7e-18	64.8	19.3	8.7e-18	64.8	19.3	3.7	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|336253723|ref|YP_004596830.1|	-	2.2e-13	50.3	22.1	2.2e-13	50.3	22.1	2.6	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|336253723|ref|YP_004596830.1|	-	3.4e-13	49.5	13.5	3.4e-13	49.5	13.5	2.1	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|336253723|ref|YP_004596830.1|	-	5.5e-05	22.0	17.5	5.5e-05	22.0	17.5	2.9	3	1	0	3	3	3	1	Lipid	II	flippase	MurJ
Methyltransf_21	PF05050.12	gi|336253724|ref|YP_004596831.1|	-	1.1e-18	67.9	0.0	8.6e-18	64.9	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|336253724|ref|YP_004596831.1|	-	0.00089	19.1	0.0	0.0015	18.3	0.0	1.3	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_25	PF13649.6	gi|336253724|ref|YP_004596831.1|	-	0.0029	18.3	0.0	0.0081	16.9	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253724|ref|YP_004596831.1|	-	0.016	15.0	0.0	0.025	14.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|336253724|ref|YP_004596831.1|	-	0.047	13.2	0.0	0.092	12.3	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	small	domain
V_cholerae_RfbT	PF05575.11	gi|336253724|ref|YP_004596831.1|	-	0.052	12.8	0.0	0.21	10.8	0.0	1.8	2	0	0	2	2	2	0	Vibrio	cholerae	RfbT	protein
Methyltransf_23	PF13489.6	gi|336253724|ref|YP_004596831.1|	-	0.097	12.5	0.0	0.49	10.2	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|336253724|ref|YP_004596831.1|	-	0.14	11.3	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
DUF1601	PF07671.11	gi|336253724|ref|YP_004596831.1|	-	0.21	11.5	0.1	0.37	10.7	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1601)
Epimerase	PF01370.21	gi|336253726|ref|YP_004596833.1|	-	4.9e-64	216.1	0.1	6.2e-64	215.7	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253726|ref|YP_004596833.1|	-	2.6e-62	211.2	0.0	5e-62	210.2	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|336253726|ref|YP_004596833.1|	-	6.6e-27	94.2	0.0	9.1e-27	93.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|336253726|ref|YP_004596833.1|	-	1.2e-23	83.6	0.1	1.5e-23	83.3	0.1	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|336253726|ref|YP_004596833.1|	-	1.5e-21	76.9	0.3	2.4e-20	72.9	0.3	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336253726|ref|YP_004596833.1|	-	2.2e-16	59.8	0.1	2.6e-13	49.7	0.1	2.4	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253726|ref|YP_004596833.1|	-	1.4e-10	41.3	0.0	2.4e-10	40.6	0.0	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|336253726|ref|YP_004596833.1|	-	0.00017	21.2	0.1	0.00037	20.1	0.0	1.6	2	0	0	2	2	2	1	NmrA-like	family
Methyltransf_31	PF13847.6	gi|336253726|ref|YP_004596833.1|	-	0.0011	18.8	0.0	0.0093	15.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
adh_short	PF00106.25	gi|336253726|ref|YP_004596833.1|	-	0.0048	16.4	0.2	0.017	14.6	0.1	2.1	2	1	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336253726|ref|YP_004596833.1|	-	0.085	12.8	1.7	0.38	10.6	0.4	2.6	2	1	0	2	2	2	0	KR	domain
TrkA_N	PF02254.18	gi|336253726|ref|YP_004596833.1|	-	0.1	12.9	1.1	0.59	10.4	0.2	2.4	2	1	0	2	2	2	0	TrkA-N	domain
Bac_transf	PF02397.16	gi|336253727|ref|YP_004596834.1|	-	2e-59	200.3	0.0	3.2e-59	199.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	sugar	transferase
DUF1970	PF09301.10	gi|336253727|ref|YP_004596834.1|	-	3.4e-12	46.6	0.0	7.7e-12	45.5	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1970)
DUF4330	PF14221.6	gi|336253728|ref|YP_004596835.1|	-	3.8e-22	79.3	14.4	7.4e-12	45.8	4.4	3.9	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4330)
Sugarporin_N	PF11471.8	gi|336253729|ref|YP_004596836.1|	-	0.038	14.0	0.4	0.1	12.6	0.4	1.8	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
BacA	PF02673.18	gi|336253730|ref|YP_004596837.1|	-	6.6e-51	173.5	13.4	8e-51	173.2	13.4	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
DUF3767	PF12597.8	gi|336253730|ref|YP_004596837.1|	-	0.071	12.9	2.4	0.71	9.7	0.1	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3767)
AglB_L1	PF18079.1	gi|336253732|ref|YP_004596839.1|	-	2.7e-05	24.4	2.0	0.00044	20.5	2.0	2.6	1	1	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
Mannosyl_trans4	PF15971.5	gi|336253732|ref|YP_004596839.1|	-	0.00088	19.1	2.7	0.0031	17.4	2.7	1.9	1	0	0	1	1	1	1	DolP-mannose	mannosyltransferase
STT3	PF02516.14	gi|336253732|ref|YP_004596839.1|	-	0.041	12.8	5.1	0.068	12.1	5.1	1.5	1	1	0	1	1	1	0	Oligosaccharyl	transferase	STT3	subunit
PGF-CTERM	PF18204.1	gi|336253733|ref|YP_004596840.1|	-	3.9e-06	26.6	7.9	3.9e-06	26.6	7.9	1.8	2	0	0	2	2	2	1	PGF-CTERM	motif
CARDB	PF07705.11	gi|336253733|ref|YP_004596840.1|	-	0.0013	18.9	0.1	0.0013	18.9	0.1	4.3	6	0	0	6	6	6	1	CARDB
AglB_L1	PF18079.1	gi|336253734|ref|YP_004596841.1|	-	3e-26	91.5	6.2	8.7e-26	90.0	6.2	1.9	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
STT3	PF02516.14	gi|336253734|ref|YP_004596841.1|	-	2.5e-20	72.9	15.4	1.3e-19	70.5	15.4	2.0	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
Transmemb_17	PF09799.9	gi|336253734|ref|YP_004596841.1|	-	0.14	12.8	4.2	0.86	10.2	4.2	2.4	1	0	0	1	1	1	0	Predicted	membrane	protein
Glycos_transf_2	PF00535.26	gi|336253735|ref|YP_004596842.1|	-	3.4e-23	82.3	0.3	4.9e-23	81.8	0.3	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253735|ref|YP_004596842.1|	-	8.2e-14	52.0	0.4	1.3e-13	51.3	0.4	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|336253735|ref|YP_004596842.1|	-	6.2e-07	29.2	2.8	6.6e-07	29.1	0.4	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|336253735|ref|YP_004596842.1|	-	1e-05	25.6	0.0	1.4e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
PDZ_2	PF13180.6	gi|336253735|ref|YP_004596842.1|	-	0.12	12.7	0.8	0.88	9.9	0.1	2.1	1	1	1	2	2	2	0	PDZ	domain
Glyco_trans_1_4	PF13692.6	gi|336253736|ref|YP_004596843.1|	-	1.4e-13	51.4	0.0	3.5e-13	50.2	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|336253736|ref|YP_004596843.1|	-	8.4e-09	35.2	0.0	1.6e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|336253736|ref|YP_004596843.1|	-	0.0042	17.5	3.4	0.0044	17.5	0.5	2.3	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
B12-binding	PF02310.19	gi|336253736|ref|YP_004596843.1|	-	0.0052	16.8	0.1	0.38	10.8	0.0	2.8	2	1	0	2	2	2	1	B12	binding	domain
Glyco_transf_4	PF13439.6	gi|336253736|ref|YP_004596843.1|	-	0.008	16.2	0.1	0.06	13.4	0.0	2.0	1	1	1	2	2	2	1	Glycosyltransferase	Family	4
Sulfatase	PF00884.23	gi|336253737|ref|YP_004596844.1|	-	2.9e-43	148.4	0.7	6.9e-43	147.2	0.3	1.7	2	0	0	2	2	2	1	Sulfatase
DUF4976	PF16347.5	gi|336253737|ref|YP_004596844.1|	-	2.7e-05	24.4	0.5	0.0012	19.1	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4976)
DUF4994	PF16385.5	gi|336253737|ref|YP_004596844.1|	-	0.00056	19.8	0.2	0.05	13.5	0.2	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function
Sulfatase_C	PF14707.6	gi|336253737|ref|YP_004596844.1|	-	0.0064	17.2	0.0	0.016	15.9	0.0	1.7	1	0	0	1	1	1	1	C-terminal	region	of	aryl-sulfatase
Metalloenzyme	PF01676.18	gi|336253737|ref|YP_004596844.1|	-	0.086	12.2	0.1	0.38	10.1	0.1	1.9	2	0	0	2	2	2	0	Metalloenzyme	superfamily
Glycos_transf_2	PF00535.26	gi|336253738|ref|YP_004596845.1|	-	1.3e-33	116.2	0.3	1.9e-33	115.6	0.3	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253738|ref|YP_004596845.1|	-	4e-23	82.5	0.2	6.3e-23	81.9	0.1	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|336253738|ref|YP_004596845.1|	-	5.7e-13	49.0	0.0	7.3e-13	48.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
EGF_CA	PF07645.15	gi|336253738|ref|YP_004596845.1|	-	0.21	11.8	0.0	0.45	10.8	0.0	1.4	1	0	0	1	1	1	0	Calcium-binding	EGF	domain
TPR_14	PF13428.6	gi|336253738|ref|YP_004596845.1|	-	3	8.9	5.4	1.3	10.1	1.5	2.6	3	0	0	3	3	3	0	Tetratricopeptide	repeat
PALP	PF00291.25	gi|336253739|ref|YP_004596846.1|	-	1.4e-61	208.5	0.2	1.6e-61	208.3	0.2	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
CbiG_N	PF11760.8	gi|336253739|ref|YP_004596846.1|	-	0.073	13.1	1.5	0.73	9.9	0.0	2.6	3	0	0	3	3	3	0	Cobalamin	synthesis	G	N-terminal
GATase_7	PF13537.6	gi|336253740|ref|YP_004596847.1|	-	1.2e-08	34.9	0.0	2.5e-08	33.9	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Asn_synthase	PF00733.21	gi|336253740|ref|YP_004596847.1|	-	1.3e-06	28.4	0.7	1.1e-05	25.3	0.7	2.1	1	1	0	1	1	1	1	Asparagine	synthase
GATase_6	PF13522.6	gi|336253740|ref|YP_004596847.1|	-	0.00032	20.9	0.1	0.0034	17.6	0.0	2.2	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
Methyltransf_21	PF05050.12	gi|336253741|ref|YP_004596848.1|	-	1.7e-14	54.2	0.0	2.7e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
V_cholerae_RfbT	PF05575.11	gi|336253741|ref|YP_004596848.1|	-	1.5e-05	24.4	0.0	3.9e-05	23.1	0.0	1.5	1	1	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Polysacc_synt_C	PF14667.6	gi|336253742|ref|YP_004596849.1|	-	1e-16	61.3	14.7	1e-16	61.3	14.7	3.6	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|336253742|ref|YP_004596849.1|	-	2.4e-16	59.8	6.4	2.4e-16	59.8	6.4	1.8	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|336253742|ref|YP_004596849.1|	-	3.7e-15	56.1	21.4	3.7e-15	56.1	21.4	2.4	3	0	0	3	3	3	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|336253742|ref|YP_004596849.1|	-	1.7e-06	27.0	16.7	1.7e-06	27.0	16.7	2.9	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
NTP_transferase	PF00483.23	gi|336253743|ref|YP_004596850.1|	-	4.4e-40	137.8	0.0	5.3e-40	137.6	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336253743|ref|YP_004596850.1|	-	2.4e-14	54.0	0.0	2.9e-14	53.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|336253743|ref|YP_004596850.1|	-	7.2e-07	29.2	0.0	5.4e-06	26.3	0.0	2.0	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|336253743|ref|YP_004596850.1|	-	0.021	14.6	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
TrmB	PF01978.19	gi|336253744|ref|YP_004596851.1|	-	9.5e-20	70.3	0.0	1.8e-19	69.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336253744|ref|YP_004596851.1|	-	0.0033	17.2	0.0	0.0059	16.4	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336253744|ref|YP_004596851.1|	-	0.0051	16.7	0.3	0.038	13.9	0.0	2.4	3	0	0	3	3	3	1	MarR	family
HTH_20	PF12840.7	gi|336253744|ref|YP_004596851.1|	-	0.024	14.7	0.1	0.087	12.9	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|336253744|ref|YP_004596851.1|	-	0.075	13.4	0.0	0.13	12.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_9	PF08221.11	gi|336253744|ref|YP_004596851.1|	-	0.15	12.2	0.0	0.26	11.4	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Epimerase	PF01370.21	gi|336253745|ref|YP_004596852.1|	-	1e-39	136.4	0.0	1.5e-39	135.9	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253745|ref|YP_004596852.1|	-	6.9e-30	104.6	0.0	7.9e-30	104.4	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336253745|ref|YP_004596852.1|	-	2.1e-25	89.4	0.1	2.6e-25	89.1	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336253745|ref|YP_004596852.1|	-	4.4e-21	75.1	0.0	1.1e-20	73.8	0.0	1.7	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336253745|ref|YP_004596852.1|	-	2.1e-16	60.0	0.0	1.3e-15	57.3	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336253745|ref|YP_004596852.1|	-	3.2e-08	33.1	0.0	4.5e-05	22.7	0.0	2.6	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253745|ref|YP_004596852.1|	-	8.2e-08	32.3	0.0	2.3e-07	30.9	0.0	1.9	1	1	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|336253745|ref|YP_004596852.1|	-	9.3e-05	22.1	0.1	0.00065	19.3	0.0	2.2	2	1	0	2	2	2	1	NmrA-like	family
Semialdhyde_dh	PF01118.24	gi|336253745|ref|YP_004596852.1|	-	0.0011	19.3	0.1	0.01	16.3	0.0	2.2	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|336253745|ref|YP_004596852.1|	-	0.0054	16.9	0.2	0.014	15.5	0.0	1.8	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|336253745|ref|YP_004596852.1|	-	0.0077	16.5	0.0	0.021	15.1	0.0	1.7	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Calsequestrin	PF01216.17	gi|336253745|ref|YP_004596852.1|	-	0.012	14.7	0.3	0.018	14.1	0.3	1.2	1	0	0	1	1	1	0	Calsequestrin
Ldh_1_N	PF00056.23	gi|336253745|ref|YP_004596852.1|	-	0.014	15.5	0.0	0.025	14.7	0.0	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|336253746|ref|YP_004596853.1|	-	4.3e-49	167.2	0.0	5.1e-49	166.9	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253746|ref|YP_004596853.1|	-	7.2e-35	120.9	0.0	1.5e-34	119.9	0.0	1.5	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|336253746|ref|YP_004596853.1|	-	5.2e-26	91.3	0.0	6.8e-26	90.9	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|336253746|ref|YP_004596853.1|	-	5e-13	48.8	0.0	6.2e-13	48.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|336253746|ref|YP_004596853.1|	-	1.1e-11	44.4	0.0	1.8e-11	43.7	0.0	1.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336253746|ref|YP_004596853.1|	-	6.2e-11	41.9	0.0	8e-07	28.5	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253746|ref|YP_004596853.1|	-	1.1e-10	41.7	0.0	1.5e-10	41.3	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|336253746|ref|YP_004596853.1|	-	0.0004	20.6	0.0	0.00076	19.7	0.0	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|336253746|ref|YP_004596853.1|	-	0.0011	18.9	0.2	0.0032	17.4	0.2	1.8	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|336253746|ref|YP_004596853.1|	-	0.017	14.5	0.0	0.026	14.0	0.0	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Ldh_1_N	PF00056.23	gi|336253746|ref|YP_004596853.1|	-	0.041	14.0	0.1	0.061	13.4	0.1	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|336253746|ref|YP_004596853.1|	-	0.091	12.3	0.0	1.8	8.1	0.0	2.4	1	1	0	1	1	1	0	NmrA-like	family
Epimerase	PF01370.21	gi|336253747|ref|YP_004596854.1|	-	1.8e-20	73.5	0.1	3.9e-20	72.4	0.1	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253747|ref|YP_004596854.1|	-	4.6e-16	59.1	0.1	2.4e-15	56.8	0.1	2.0	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336253747|ref|YP_004596854.1|	-	0.00012	21.4	0.0	0.021	14.0	0.1	2.9	2	1	0	2	2	2	2	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|336253747|ref|YP_004596854.1|	-	0.00018	20.7	0.0	0.001	18.3	0.0	2.1	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
KR	PF08659.10	gi|336253747|ref|YP_004596854.1|	-	0.016	15.1	0.0	0.025	14.5	0.0	1.3	1	0	0	1	1	1	0	KR	domain
3Beta_HSD	PF01073.19	gi|336253747|ref|YP_004596854.1|	-	0.032	13.3	0.0	0.11	11.5	0.0	1.8	2	1	0	2	2	2	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Glycos_transf_2	PF00535.26	gi|336253749|ref|YP_004596856.1|	-	5.3e-22	78.4	0.0	9e-22	77.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253749|ref|YP_004596856.1|	-	3.9e-14	53.1	0.1	1.5e-13	51.2	0.1	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|336253749|ref|YP_004596856.1|	-	2.4e-07	30.5	0.2	5.9e-06	26.0	0.1	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|336253749|ref|YP_004596856.1|	-	1.9e-05	24.7	0.0	3.2e-05	23.9	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|336253749|ref|YP_004596856.1|	-	0.0024	17.4	0.0	0.0045	16.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Sulfatase	PF00884.23	gi|336253750|ref|YP_004596857.1|	-	2.9e-23	82.7	0.3	7.3e-23	81.4	0.3	1.6	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336253750|ref|YP_004596857.1|	-	1.3e-08	34.8	1.5	1.3e-06	28.3	0.1	2.2	1	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Epimerase	PF01370.21	gi|336253751|ref|YP_004596858.1|	-	6.8e-64	215.6	0.0	8.4e-64	215.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253751|ref|YP_004596858.1|	-	4.6e-62	210.4	0.0	3.4e-61	207.5	0.0	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|336253751|ref|YP_004596858.1|	-	1.3e-30	106.4	0.0	1.6e-30	106.1	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336253751|ref|YP_004596858.1|	-	1.9e-17	63.3	0.0	1.2e-16	60.8	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|336253751|ref|YP_004596858.1|	-	1.1e-13	51.5	0.0	1.5e-13	51.0	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|336253751|ref|YP_004596858.1|	-	9.7e-12	44.6	0.0	1.1e-11	44.3	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|336253751|ref|YP_004596858.1|	-	2.5e-10	40.0	0.1	4.4e-08	32.6	0.1	2.5	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|336253751|ref|YP_004596858.1|	-	1.8e-06	27.7	0.1	3e-06	27.0	0.1	1.3	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|336253751|ref|YP_004596858.1|	-	0.00029	20.3	0.1	0.0005	19.6	0.1	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336253751|ref|YP_004596858.1|	-	0.00041	20.3	1.1	0.0013	18.7	1.1	1.7	1	1	0	1	1	1	1	KR	domain
TrkA_N	PF02254.18	gi|336253751|ref|YP_004596858.1|	-	0.0076	16.5	0.0	0.017	15.4	0.0	1.7	1	0	0	1	1	1	1	TrkA-N	domain
Glycos_transf_1	PF00534.20	gi|336253752|ref|YP_004596859.1|	-	2.5e-30	105.3	0.0	3.7e-30	104.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336253752|ref|YP_004596859.1|	-	1.1e-27	97.1	0.0	2.5e-27	95.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|336253752|ref|YP_004596859.1|	-	9.5e-08	32.3	0.0	2e-07	31.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|336253752|ref|YP_004596859.1|	-	0.016	15.6	1.1	0.027	14.9	0.3	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Sulfatase	PF00884.23	gi|336253753|ref|YP_004596860.1|	-	1e-31	110.5	0.0	1.6e-31	109.9	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336253753|ref|YP_004596860.1|	-	8.2e-15	55.2	1.4	2.9e-14	53.4	1.4	1.9	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|336253753|ref|YP_004596860.1|	-	3.8e-05	22.5	0.0	9.1e-05	21.2	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.18	gi|336253753|ref|YP_004596860.1|	-	0.0011	18.4	0.0	0.0046	16.3	0.0	1.8	2	0	0	2	2	2	1	Metalloenzyme	superfamily
DUF1501	PF07394.12	gi|336253753|ref|YP_004596860.1|	-	0.0053	15.9	0.0	0.0085	15.2	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
DUF3974	PF13120.6	gi|336253753|ref|YP_004596860.1|	-	0.061	13.4	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3974)
Hexapep	PF00132.24	gi|336253754|ref|YP_004596861.1|	-	3.2e-12	45.7	5.1	1.3e-09	37.4	2.0	3.8	4	0	0	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336253754|ref|YP_004596861.1|	-	4.5e-09	35.9	15.6	6e-09	35.5	3.3	3.3	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Mso1_Sec1_bdg	PF14475.6	gi|336253754|ref|YP_004596861.1|	-	0.1	12.2	0.1	0.18	11.4	0.1	1.4	1	0	0	1	1	1	0	Sec1-binding	region	of	Mso1
Capsule_synth	PF05159.14	gi|336253755|ref|YP_004596862.1|	-	8.1e-09	35.3	0.0	1.2e-08	34.8	0.0	1.2	1	0	0	1	1	1	1	Capsule	polysaccharide	biosynthesis	protein
Epimerase_2	PF02350.19	gi|336253755|ref|YP_004596862.1|	-	0.00097	18.1	0.0	0.0016	17.3	0.0	1.3	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
CTP_transf_3	PF02348.19	gi|336253756|ref|YP_004596863.1|	-	2.1e-17	63.8	0.0	2.8e-17	63.4	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
NTP_transf_3	PF12804.7	gi|336253756|ref|YP_004596863.1|	-	2.1e-11	44.4	0.0	3.2e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF2064	PF09837.9	gi|336253756|ref|YP_004596863.1|	-	0.077	12.8	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
FAA_hydrolase	PF01557.18	gi|336253757|ref|YP_004596864.1|	-	1.9e-31	109.5	0.1	2.1e-31	109.3	0.1	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Glyco_trans_1_4	PF13692.6	gi|336253758|ref|YP_004596865.1|	-	0.0096	16.3	0.4	0.02	15.3	0.4	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_tran_28_C	PF04101.16	gi|336253758|ref|YP_004596865.1|	-	0.022	14.7	0.0	0.031	14.3	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	family	28	C-terminal	domain
DUF4778	PF16008.5	gi|336253758|ref|YP_004596865.1|	-	0.19	11.8	0.0	0.24	11.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4778)
Glyco_trans_1_2	PF13524.6	gi|336253758|ref|YP_004596865.1|	-	2.1	8.8	4.2	0.79	10.2	0.3	2.4	2	1	0	2	2	2	0	Glycosyl	transferases	group	1
N_formyltrans_C	PF18216.1	gi|336253759|ref|YP_004596866.1|	-	6.1e-23	80.2	0.4	1.2e-22	79.3	0.4	1.5	1	0	0	1	1	1	1	N-formyltransferase	dimerization	C-terminal	domain
Formyl_trans_N	PF00551.19	gi|336253759|ref|YP_004596866.1|	-	4e-21	75.6	0.0	5.6e-21	75.1	0.0	1.1	1	0	0	1	1	1	1	Formyl	transferase
NeuB	PF03102.14	gi|336253760|ref|YP_004596867.1|	-	1.6e-85	286.4	0.0	1.9e-85	286.2	0.0	1.0	1	0	0	1	1	1	1	NeuB	family
SAF	PF08666.12	gi|336253760|ref|YP_004596867.1|	-	1e-10	42.1	0.1	2.3e-10	40.9	0.1	1.7	1	0	0	1	1	1	1	SAF	domain
DUF3486	PF11985.8	gi|336253760|ref|YP_004596867.1|	-	0.074	13.5	0.4	0.14	12.5	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3486)
DegT_DnrJ_EryC1	PF01041.17	gi|336253761|ref|YP_004596868.1|	-	3e-120	401.8	0.0	3.4e-120	401.7	0.0	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|336253761|ref|YP_004596868.1|	-	2.2e-08	33.7	0.0	1e-07	31.5	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|336253761|ref|YP_004596868.1|	-	1.4e-07	31.1	0.0	3.4e-07	29.8	0.0	1.5	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|336253761|ref|YP_004596868.1|	-	8.3e-07	28.3	0.0	1.3e-06	27.6	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|336253761|ref|YP_004596868.1|	-	3.8e-06	25.7	0.0	5.2e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
OKR_DC_1	PF01276.20	gi|336253761|ref|YP_004596868.1|	-	0.0097	14.7	0.1	0.018	13.8	0.1	1.4	1	1	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
GDP_Man_Dehyd	PF16363.5	gi|336253762|ref|YP_004596869.1|	-	8.2e-59	199.7	0.0	1.3e-58	199.0	0.0	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|336253762|ref|YP_004596869.1|	-	1.8e-54	184.8	0.0	2.1e-54	184.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336253762|ref|YP_004596869.1|	-	4.5e-19	68.5	0.0	6.6e-19	68.0	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|336253762|ref|YP_004596869.1|	-	1.1e-16	60.8	0.0	1.4e-16	60.4	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|336253762|ref|YP_004596869.1|	-	2.7e-13	49.7	0.0	4.9e-09	35.7	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253762|ref|YP_004596869.1|	-	1.7e-10	41.1	0.0	3.9e-10	39.9	0.0	1.6	2	0	0	2	2	2	1	NAD(P)H-binding
Polysacc_synt_2	PF02719.15	gi|336253762|ref|YP_004596869.1|	-	5.3e-10	38.9	0.0	5.5e-09	35.6	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|336253762|ref|YP_004596869.1|	-	4.9e-06	26.1	0.0	8.5e-05	22.1	0.0	2.3	2	0	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|336253762|ref|YP_004596869.1|	-	0.0004	20.0	0.0	0.00071	19.2	0.0	1.4	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|336253762|ref|YP_004596869.1|	-	0.02	14.8	0.2	0.076	12.9	0.0	2.0	2	1	0	2	2	2	0	KR	domain
adh_short_C2	PF13561.6	gi|336253762|ref|YP_004596869.1|	-	0.1	12.1	0.0	0.23	11.0	0.0	1.5	1	1	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
Polysacc_synt_2	PF02719.15	gi|336253763|ref|YP_004596870.1|	-	2.8e-90	302.4	0.0	3.4e-90	302.2	0.0	1.0	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Epimerase	PF01370.21	gi|336253763|ref|YP_004596870.1|	-	2.5e-22	79.5	0.0	2.6e-21	76.2	0.0	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336253763|ref|YP_004596870.1|	-	7.5e-22	77.6	0.0	1.2e-21	76.9	0.0	1.4	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|336253763|ref|YP_004596870.1|	-	1.5e-16	60.7	0.0	3.3e-16	59.6	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336253763|ref|YP_004596870.1|	-	1e-14	54.3	0.0	1.9e-13	50.2	0.0	2.1	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|336253763|ref|YP_004596870.1|	-	1.1e-12	48.3	0.3	2.3e-12	47.2	0.1	1.7	2	0	0	2	2	2	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336253763|ref|YP_004596870.1|	-	7.4e-09	35.2	0.1	2.6e-05	23.5	0.1	3.2	1	1	1	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|336253763|ref|YP_004596870.1|	-	1.2e-08	34.7	0.0	1.8e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|336253763|ref|YP_004596870.1|	-	3.8e-05	23.4	0.0	6.3e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|336253763|ref|YP_004596870.1|	-	7.1e-05	23.1	0.0	0.00014	22.1	0.0	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
adh_short_C2	PF13561.6	gi|336253763|ref|YP_004596870.1|	-	0.0019	17.8	0.0	0.0036	16.9	0.0	1.4	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
TrkA_N	PF02254.18	gi|336253763|ref|YP_004596870.1|	-	0.0033	17.7	0.1	0.011	16.0	0.0	1.9	2	1	0	2	2	2	1	TrkA-N	domain
Methyltransf_25	PF13649.6	gi|336253763|ref|YP_004596870.1|	-	0.0039	17.9	0.0	0.043	14.5	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Ldh_1_N	PF00056.23	gi|336253763|ref|YP_004596870.1|	-	0.015	15.4	0.1	0.027	14.6	0.1	1.5	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336253763|ref|YP_004596870.1|	-	0.14	12.7	0.0	0.46	11.1	0.0	1.9	2	0	0	2	2	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
ABC_tran	PF00005.27	gi|336253764|ref|YP_004596871.1|	-	1.5e-33	116.2	0.0	2.5e-33	115.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|336253764|ref|YP_004596871.1|	-	9.4e-13	48.4	8.5	1.5e-12	47.7	8.5	1.3	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|336253764|ref|YP_004596871.1|	-	4.1e-08	32.9	0.1	2.7e-06	27.0	0.0	2.4	3	0	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|336253764|ref|YP_004596871.1|	-	0.00017	21.5	0.0	0.00035	20.5	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|336253764|ref|YP_004596871.1|	-	0.0012	18.5	0.0	0.0029	17.3	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336253764|ref|YP_004596871.1|	-	0.0055	17.1	0.1	0.016	15.6	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336253764|ref|YP_004596871.1|	-	0.012	15.9	0.1	0.094	13.0	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|336253764|ref|YP_004596871.1|	-	0.054	13.1	1.8	0.27	10.8	0.0	2.9	4	0	0	4	4	4	0	AAA	domain
AAA_23	PF13476.6	gi|336253764|ref|YP_004596871.1|	-	0.07	13.6	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
G-alpha	PF00503.20	gi|336253764|ref|YP_004596871.1|	-	0.071	12.3	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_30	PF13604.6	gi|336253764|ref|YP_004596871.1|	-	0.083	12.6	0.1	0.43	10.3	0.0	2.1	3	0	0	3	3	3	0	AAA	domain
Reticulon	PF02453.17	gi|336253764|ref|YP_004596871.1|	-	0.11	12.5	2.8	0.36	10.8	2.0	2.0	1	1	1	2	2	2	0	Reticulon
MMR_HSR1	PF01926.23	gi|336253764|ref|YP_004596871.1|	-	0.15	12.1	0.0	0.37	10.9	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
SIS	PF01380.22	gi|336253765|ref|YP_004596872.1|	-	2e-37	128.0	0.2	4.5e-20	71.8	0.1	2.4	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|336253765|ref|YP_004596872.1|	-	5.9e-22	78.3	0.0	1.2e-21	77.3	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|336253765|ref|YP_004596872.1|	-	4.6e-19	68.5	0.0	7.5e-19	67.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|336253765|ref|YP_004596872.1|	-	0.078	11.9	0.0	0.23	10.3	0.0	1.7	2	0	0	2	2	2	0	Glutamine	amidotransferases	class-II
NTP_transferase	PF00483.23	gi|336253766|ref|YP_004596873.1|	-	4.2e-45	154.3	0.0	6.1e-45	153.7	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336253766|ref|YP_004596873.1|	-	3.7e-18	66.4	0.1	5.3e-18	65.9	0.1	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|336253766|ref|YP_004596873.1|	-	3.5e-14	51.9	27.6	1.2e-08	34.3	4.3	4.1	2	1	2	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336253766|ref|YP_004596873.1|	-	2.1e-08	33.8	23.9	3.4e-05	23.5	3.5	4.3	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|336253766|ref|YP_004596873.1|	-	8.9e-08	32.1	0.9	8.9e-08	32.1	0.9	1.8	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Fucokinase	PF07959.12	gi|336253766|ref|YP_004596873.1|	-	0.007	15.4	0.0	0.021	13.8	0.1	1.8	2	0	0	2	2	2	1	L-fucokinase
DUF4954	PF16314.5	gi|336253766|ref|YP_004596873.1|	-	0.067	11.3	6.5	0.035	12.3	4.2	1.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4954)
GDP_Man_Dehyd	PF16363.5	gi|336253767|ref|YP_004596874.1|	-	2e-67	228.0	0.0	2.3e-67	227.8	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|336253767|ref|YP_004596874.1|	-	2.1e-61	207.4	0.0	3.3e-61	206.8	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336253767|ref|YP_004596874.1|	-	2e-21	76.2	0.0	2.8e-21	75.7	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|336253767|ref|YP_004596874.1|	-	7.8e-20	71.1	0.0	9.8e-20	70.8	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|336253767|ref|YP_004596874.1|	-	1.1e-15	57.6	0.0	5.1e-15	55.4	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336253767|ref|YP_004596874.1|	-	5.5e-09	35.6	1.2	8.2e-08	31.7	1.2	2.3	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253767|ref|YP_004596874.1|	-	4.3e-07	30.0	0.0	2.9e-06	27.3	0.0	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|336253767|ref|YP_004596874.1|	-	0.0016	18.1	0.0	0.0021	17.6	0.0	1.5	1	1	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|336253767|ref|YP_004596874.1|	-	0.0023	17.9	0.0	0.0059	16.5	0.0	1.7	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|336253767|ref|YP_004596874.1|	-	0.0037	16.7	0.1	0.015	14.8	0.0	2.1	2	1	0	2	2	2	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336253767|ref|YP_004596874.1|	-	0.069	12.7	0.0	1.2	8.6	0.0	2.1	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
NTP_transferase	PF00483.23	gi|336253768|ref|YP_004596875.1|	-	1.2e-42	146.2	0.0	1.4e-42	146.0	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336253768|ref|YP_004596875.1|	-	8.7e-15	55.4	0.0	1e-14	55.2	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|336253768|ref|YP_004596875.1|	-	2.2e-06	27.6	0.0	1.2e-05	25.2	0.0	1.9	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
oligo_HPY	PF08352.12	gi|336253769|ref|YP_004596876.1|	-	0.18	12.4	0.0	0.23	12.0	0.0	1.2	1	0	0	1	1	1	0	Oligopeptide/dipeptide	transporter,	C-terminal	region
Epimerase	PF01370.21	gi|336253770|ref|YP_004596877.1|	-	5.2e-47	160.3	0.3	6.1e-47	160.1	0.3	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336253770|ref|YP_004596877.1|	-	2e-41	142.5	0.2	7.5e-41	140.6	0.2	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336253770|ref|YP_004596877.1|	-	4.3e-12	45.7	0.2	5.8e-12	45.3	0.2	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336253770|ref|YP_004596877.1|	-	5.8e-12	45.2	0.8	1.7e-11	43.7	0.8	1.8	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336253770|ref|YP_004596877.1|	-	3e-09	36.4	0.0	3.6e-06	26.3	0.0	2.2	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336253770|ref|YP_004596877.1|	-	1.8e-08	33.9	0.1	1.5e-05	24.4	0.1	2.5	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336253770|ref|YP_004596877.1|	-	0.0086	16.0	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
KR	PF08659.10	gi|336253770|ref|YP_004596877.1|	-	0.049	13.5	0.0	3	7.7	0.0	2.4	2	0	0	2	2	2	0	KR	domain
adh_short	PF00106.25	gi|336253770|ref|YP_004596877.1|	-	0.089	12.2	0.4	3.1	7.2	0.1	2.6	1	1	1	2	2	2	0	short	chain	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|336253771|ref|YP_004596878.1|	-	4.7e-51	173.0	0.1	8e-51	172.3	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|336253771|ref|YP_004596878.1|	-	1.7e-33	114.7	0.0	2.9e-33	113.9	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|336253771|ref|YP_004596878.1|	-	4.9e-26	91.2	0.0	1.4e-25	89.7	0.0	1.8	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336253771|ref|YP_004596878.1|	-	1.4e-05	25.1	0.0	5.6e-05	23.2	0.0	2.0	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|336253771|ref|YP_004596878.1|	-	2.8e-05	23.8	0.0	9.1e-05	22.1	0.0	1.8	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|336253771|ref|YP_004596878.1|	-	3.9e-05	23.6	0.1	7.6e-05	22.7	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|336253771|ref|YP_004596878.1|	-	0.0004	20.9	1.0	0.0068	16.9	0.3	3.1	3	1	1	4	4	4	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336253771|ref|YP_004596878.1|	-	0.0011	18.2	0.1	0.002	17.4	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|336253771|ref|YP_004596878.1|	-	0.0024	18.4	0.8	0.67	10.6	0.0	3.8	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|336253771|ref|YP_004596878.1|	-	0.015	15.5	5.4	0.049	13.9	0.3	3.3	3	1	0	3	3	3	0	TrkA-N	domain
NAD_binding_8	PF13450.6	gi|336253771|ref|YP_004596878.1|	-	0.034	14.4	0.1	0.11	12.7	0.1	2.0	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Rossmann-like	PF10727.9	gi|336253771|ref|YP_004596878.1|	-	0.045	13.6	0.3	0.13	12.1	0.3	1.9	1	0	0	1	1	1	0	Rossmann-like	domain
ThiS	PF02597.20	gi|336253771|ref|YP_004596878.1|	-	0.053	14.2	0.1	3.7	8.3	0.0	3.4	3	0	0	3	3	3	0	ThiS	family
DUF3320	PF11784.8	gi|336253771|ref|YP_004596878.1|	-	0.054	13.5	0.3	0.17	11.9	0.3	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3320)
2-Hacid_dh_C	PF02826.19	gi|336253771|ref|YP_004596878.1|	-	0.1	12.0	0.1	0.57	9.5	0.0	2.1	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Glycos_transf_2	PF00535.26	gi|336253772|ref|YP_004596879.1|	-	1.6e-18	67.1	0.1	2.3e-18	66.6	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336253772|ref|YP_004596879.1|	-	2.2e-10	40.8	0.0	3.4e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|336253772|ref|YP_004596879.1|	-	0.0034	17.9	0.0	0.0071	16.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
UPF0060	PF02694.15	gi|336253772|ref|YP_004596879.1|	-	0.0064	16.7	1.8	0.011	16.0	1.8	1.3	1	0	0	1	1	1	1	Uncharacterised	BCR,	YnfA/UPF0060	family
CoA_binding_2	PF13380.6	gi|336253772|ref|YP_004596879.1|	-	0.1	13.1	0.0	0.26	11.8	0.0	1.6	1	0	0	1	1	1	0	CoA	binding	domain
CobD_Cbib	PF03186.13	gi|336253772|ref|YP_004596879.1|	-	0.11	11.6	0.0	0.18	11.0	0.0	1.2	1	0	0	1	1	1	0	CobD/Cbib	protein
RHH_1	PF01402.21	gi|336253774|ref|YP_004596881.1|	-	0.00064	19.6	0.1	0.0011	18.8	0.0	1.5	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
PG_binding_2	PF08823.11	gi|336253774|ref|YP_004596881.1|	-	0.083	13.2	0.1	0.19	12.0	0.1	1.6	2	0	0	2	2	2	0	Putative	peptidoglycan	binding	domain
SHOCT	PF09851.9	gi|336253774|ref|YP_004596881.1|	-	0.18	11.6	2.7	0.34	10.7	2.7	1.5	1	1	0	1	1	1	0	Short	C-terminal	domain
Glyoxalase	PF00903.25	gi|336253777|ref|YP_004596884.1|	-	3.7e-10	40.1	0.1	4.1e-06	27.0	0.0	3.0	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|336253777|ref|YP_004596884.1|	-	1.9e-08	35.1	4.6	0.00037	21.3	0.8	2.2	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|336253777|ref|YP_004596884.1|	-	0.014	15.4	0.0	3.3	7.7	0.0	3.4	4	0	0	4	4	4	0	Glyoxalase-like	domain
DUF397	PF04149.12	gi|336253777|ref|YP_004596884.1|	-	0.058	13.5	0.2	37	4.5	0.0	3.5	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF397)
Acetyltransf_10	PF13673.7	gi|336253777|ref|YP_004596884.1|	-	0.17	11.8	0.0	0.35	10.8	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF892	PF05974.12	gi|336253778|ref|YP_004596885.1|	-	3.5e-41	140.9	5.2	4.3e-41	140.6	5.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Ferritin	PF00210.24	gi|336253778|ref|YP_004596885.1|	-	0.0011	19.0	9.1	0.0032	17.4	9.1	1.9	1	1	0	1	1	1	1	Ferritin-like	domain
TraB	PF01963.17	gi|336253778|ref|YP_004596885.1|	-	0.021	14.8	1.7	0.028	14.3	1.7	1.2	1	0	0	1	1	1	0	TraB	family
DUF4142	PF13628.6	gi|336253778|ref|YP_004596885.1|	-	0.034	14.4	4.9	0.12	12.6	0.3	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4142)
Vir_act_alpha_C	PF10400.9	gi|336253778|ref|YP_004596885.1|	-	0.088	13.5	2.4	8.8	7.1	1.0	2.4	2	1	0	2	2	2	0	Virulence	activator	alpha	C-term
Rubrerythrin	PF02915.17	gi|336253778|ref|YP_004596885.1|	-	0.095	13.1	4.8	0.15	12.4	4.5	1.5	1	1	0	1	1	1	0	Rubrerythrin
FKBP_N	PF01346.18	gi|336253778|ref|YP_004596885.1|	-	0.45	11.5	5.3	0.4	11.7	1.2	2.3	1	1	2	3	3	3	0	Domain	amino	terminal	to	FKBP-type	peptidyl-prolyl	isomerase
MerR-DNA-bind	PF09278.11	gi|336253778|ref|YP_004596885.1|	-	0.64	10.6	3.3	0.49	11.0	0.7	2.0	2	0	0	2	2	2	0	MerR,	DNA	binding
CHIP_TPR_N	PF18391.1	gi|336253778|ref|YP_004596885.1|	-	0.81	10.5	6.2	0.14	12.9	1.4	2.0	2	1	0	2	2	2	0	CHIP	N-terminal	tetratricopeptide	repeat	domain
CdiI_2	PF18593.1	gi|336253778|ref|YP_004596885.1|	-	2.2	9.0	8.5	52	4.6	0.2	3.2	1	1	2	3	3	3	0	CdiI	immunity	protein
DUF4337	PF14235.6	gi|336253778|ref|YP_004596885.1|	-	3	7.9	4.9	16	5.6	4.9	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
DUF3188	PF11384.8	gi|336253779|ref|YP_004596886.1|	-	0.043	13.5	0.3	1.6	8.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
DUF2892	PF11127.8	gi|336253779|ref|YP_004596886.1|	-	0.066	13.3	0.7	0.078	13.0	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
DUF4131	PF13567.6	gi|336253779|ref|YP_004596886.1|	-	0.13	11.9	2.5	0.15	11.7	2.5	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Ferritin	PF00210.24	gi|336253781|ref|YP_004596888.1|	-	1.7e-24	86.4	0.5	2e-24	86.2	0.5	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|336253781|ref|YP_004596888.1|	-	1.7e-10	41.5	0.1	1.9e-10	41.3	0.1	1.0	1	0	0	1	1	1	1	Rubrerythrin
DUF4439	PF14530.6	gi|336253781|ref|YP_004596888.1|	-	0.00013	22.6	0.1	0.00021	22.0	0.1	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4439)
DUF892	PF05974.12	gi|336253781|ref|YP_004596888.1|	-	0.00055	20.0	2.0	0.0015	18.6	2.0	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Ferritin_2	PF13668.6	gi|336253781|ref|YP_004596888.1|	-	0.0028	17.8	0.1	0.0038	17.4	0.1	1.3	1	0	0	1	1	1	1	Ferritin-like	domain
Ferritin-like	PF12902.7	gi|336253781|ref|YP_004596888.1|	-	0.0052	16.7	0.0	0.0059	16.5	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like
DUF2383	PF09537.10	gi|336253781|ref|YP_004596888.1|	-	0.0055	17.0	0.8	2.7	8.4	0.1	2.3	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF2383)
GatB_Yqey	PF02637.18	gi|336253781|ref|YP_004596888.1|	-	0.045	13.6	0.3	0.11	12.3	0.2	1.8	1	1	0	1	1	1	0	GatB	domain
T3SSipB	PF16535.5	gi|336253781|ref|YP_004596888.1|	-	0.063	13.7	0.3	0.082	13.4	0.3	1.3	1	0	0	1	1	1	0	Type	III	cell	invasion	protein	SipB
DUF349	PF03993.12	gi|336253781|ref|YP_004596888.1|	-	0.076	13.3	0.4	3.4	8.0	0.0	2.2	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF349)
HMGL-like	PF00682.19	gi|336253782|ref|YP_004596889.1|	-	3.9e-82	275.7	6.6	6.4e-82	275.1	6.6	1.3	1	0	0	1	1	1	1	HMGL-like
AP_endonuc_2	PF01261.24	gi|336253782|ref|YP_004596889.1|	-	0.0074	15.7	0.5	0.027	13.9	0.1	2.2	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
TPP_enzyme_N	PF02776.18	gi|336253783|ref|YP_004596890.1|	-	5.8e-52	175.8	0.6	3.2e-51	173.4	0.2	2.4	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|336253783|ref|YP_004596890.1|	-	5.3e-50	169.2	1.8	1e-49	168.2	0.1	2.4	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|336253783|ref|YP_004596890.1|	-	7.1e-46	155.4	0.1	2.6e-45	153.5	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.16	gi|336253783|ref|YP_004596890.1|	-	0.0018	18.1	0.0	0.0032	17.3	0.0	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
ALS_ss_C	PF10369.9	gi|336253784|ref|YP_004596891.1|	-	5.3e-21	74.6	0.1	9e-21	73.9	0.1	1.4	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.6	gi|336253784|ref|YP_004596891.1|	-	1.8e-14	53.3	0.0	3.1e-14	52.6	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|336253784|ref|YP_004596891.1|	-	6.3e-14	51.5	0.1	1.6e-13	50.2	0.0	1.7	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|336253784|ref|YP_004596891.1|	-	0.0061	17.1	0.0	0.012	16.2	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
SbcD_C	PF12320.8	gi|336253784|ref|YP_004596891.1|	-	0.031	14.6	0.2	0.22	11.8	0.1	2.1	2	0	0	2	2	2	0	Type	5	capsule	protein	repressor	C-terminal	domain
IlvN	PF07991.12	gi|336253785|ref|YP_004596892.1|	-	9.4e-71	236.7	0.0	1.4e-70	236.1	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|336253785|ref|YP_004596892.1|	-	1.9e-63	213.1	0.5	2.6e-63	212.6	0.5	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
2-Hacid_dh_C	PF02826.19	gi|336253785|ref|YP_004596892.1|	-	2.3e-05	23.9	0.0	4.2e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|336253785|ref|YP_004596892.1|	-	5.8e-05	23.3	0.0	0.00011	22.5	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|336253785|ref|YP_004596892.1|	-	0.00011	22.7	0.0	0.00024	21.6	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.16	gi|336253785|ref|YP_004596892.1|	-	0.0028	17.3	0.1	0.0052	16.4	0.1	1.5	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Mur_ligase	PF01225.25	gi|336253785|ref|YP_004596892.1|	-	0.013	15.8	0.1	0.031	14.6	0.1	1.7	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
Aconitase	PF00330.20	gi|336253787|ref|YP_004596894.1|	-	5.7e-146	487.2	0.0	6.4e-146	487.0	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|336253787|ref|YP_004596894.1|	-	0.00054	18.8	0.0	0.001	17.9	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
DUF3944	PF13099.6	gi|336253787|ref|YP_004596894.1|	-	0.11	12.4	0.0	0.29	11.1	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3944)
Aconitase_C	PF00694.19	gi|336253788|ref|YP_004596895.1|	-	1.3e-19	70.9	0.0	2.1e-19	70.2	0.0	1.3	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
HMG-CoA_red	PF00368.18	gi|336253788|ref|YP_004596895.1|	-	0.094	11.7	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	Hydroxymethylglutaryl-coenzyme	A	reductase
VWA_2	PF13519.6	gi|336253789|ref|YP_004596896.1|	-	5.6e-13	49.5	0.0	1.1e-12	48.5	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|336253789|ref|YP_004596896.1|	-	1.4e-12	48.3	0.2	3.2e-12	47.1	0.2	1.6	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|336253789|ref|YP_004596896.1|	-	8.5e-09	35.5	0.4	7.5e-08	32.5	0.0	2.1	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|336253789|ref|YP_004596896.1|	-	0.011	15.1	0.2	0.89	8.9	0.0	2.3	2	0	0	2	2	2	0	VWA	domain	containing	CoxE-like	protein
Peptidase_S8	PF00082.22	gi|336253790|ref|YP_004596897.1|	-	1.8e-35	122.7	5.7	5.2e-35	121.1	5.7	1.8	1	1	0	1	1	1	1	Subtilase	family
CarboxypepD_reg	PF13620.6	gi|336253790|ref|YP_004596897.1|	-	9e-33	112.4	26.5	4.2e-18	65.4	3.8	3.8	3	0	0	3	3	3	3	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|336253790|ref|YP_004596897.1|	-	7.4e-17	61.1	3.7	6.9e-11	42.0	0.3	3.4	1	1	2	3	3	3	2	CarboxypepD_reg-like	domain
PEGA	PF08308.11	gi|336253790|ref|YP_004596897.1|	-	1e-06	28.5	0.3	0.055	13.4	0.1	3.7	4	0	0	4	4	4	2	PEGA	domain
Big_1	PF02369.16	gi|336253790|ref|YP_004596897.1|	-	2.7e-06	27.3	9.5	0.00051	20.0	1.5	4.0	3	0	0	3	3	3	2	Bacterial	Ig-like	domain	(group	1)
bMG3	PF11974.8	gi|336253790|ref|YP_004596897.1|	-	7.1e-05	22.8	2.9	0.0043	17.1	0.2	2.7	2	0	0	2	2	2	1	Bacterial	alpha-2-macroglobulin	MG3	domain
DUF4249	PF14054.6	gi|336253790|ref|YP_004596897.1|	-	0.00027	20.7	7.0	0.064	12.9	0.5	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4249)
MG4	PF17789.1	gi|336253790|ref|YP_004596897.1|	-	0.0004	20.5	0.4	0.026	14.7	0.1	2.8	2	0	0	2	2	2	1	Macroglobulin	domain	MG4
DUF3869	PF12985.7	gi|336253790|ref|YP_004596897.1|	-	0.004	17.5	15.8	0.048	14.0	1.9	4.1	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF3869)
DUF824	PF05688.11	gi|336253790|ref|YP_004596897.1|	-	0.015	15.1	2.7	3.5	7.5	0.1	3.1	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
SdrD_B	PF17210.3	gi|336253790|ref|YP_004596897.1|	-	0.086	13.1	10.4	0.23	11.7	1.4	3.3	1	1	1	3	3	3	0	SdrD	B-like	domain
YtkA	PF13115.6	gi|336253790|ref|YP_004596897.1|	-	1.6	9.4	5.0	8.7	7.0	0.1	3.6	3	2	0	3	3	3	0	YtkA-like
Iso_dh	PF00180.20	gi|336253791|ref|YP_004596898.1|	-	2.6e-89	299.8	0.0	3.2e-89	299.5	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Glyco_hydro_3_C	PF01915.22	gi|336253792|ref|YP_004596899.1|	-	1.2e-58	198.5	0.0	3.2e-58	197.1	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|336253792|ref|YP_004596899.1|	-	5e-52	177.2	0.0	3.8e-51	174.4	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|336253792|ref|YP_004596899.1|	-	1.4e-18	66.7	0.1	2.9e-18	65.7	0.1	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
TP_methylase	PF00590.20	gi|336253793|ref|YP_004596900.1|	-	1.6e-22	80.5	3.1	2e-22	80.2	3.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Ribonuc_L-PSP	PF01042.21	gi|336253794|ref|YP_004596901.1|	-	2.8e-28	98.4	0.1	3.2e-28	98.2	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Rieske	PF00355.26	gi|336253795|ref|YP_004596902.1|	-	4.1e-07	29.8	0.1	5.4e-07	29.5	0.1	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Met_10	PF02475.16	gi|336253796|ref|YP_004596903.1|	-	1.4e-56	191.5	0.0	1.8e-56	191.1	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|336253796|ref|YP_004596903.1|	-	1.3e-13	50.5	0.0	3.5e-13	49.2	0.0	1.7	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
Methyltransf_25	PF13649.6	gi|336253796|ref|YP_004596903.1|	-	6.9e-07	29.9	0.0	2.3e-06	28.2	0.0	1.9	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|336253796|ref|YP_004596903.1|	-	3e-06	26.9	0.0	4.2e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_11	PF08241.12	gi|336253796|ref|YP_004596903.1|	-	2.5e-05	24.8	0.0	6.7e-05	23.5	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253796|ref|YP_004596903.1|	-	0.00014	21.7	0.0	0.00023	21.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|336253796|ref|YP_004596903.1|	-	0.00048	19.6	0.0	0.00073	19.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|336253796|ref|YP_004596903.1|	-	0.0015	18.1	0.0	0.003	17.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|336253796|ref|YP_004596903.1|	-	0.0021	17.9	0.1	0.0071	16.2	0.1	1.7	1	1	1	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336253796|ref|YP_004596903.1|	-	0.0065	16.1	0.0	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
UPF0020	PF01170.18	gi|336253796|ref|YP_004596903.1|	-	0.0093	15.7	0.0	0.016	14.9	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_12	PF08242.12	gi|336253796|ref|YP_004596903.1|	-	0.13	13.1	0.0	0.39	11.5	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
DNA_methylase	PF00145.17	gi|336253796|ref|YP_004596903.1|	-	0.14	11.4	0.0	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Methyltransf_18	PF12847.7	gi|336253796|ref|YP_004596903.1|	-	0.22	11.4	0.0	0.38	10.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
CbiQ	PF02361.16	gi|336253797|ref|YP_004596904.1|	-	3.2e-19	69.4	5.2	4.1e-19	69.1	5.2	1.2	1	0	0	1	1	1	1	Cobalt	transport	protein
ABC_tran	PF00005.27	gi|336253798|ref|YP_004596905.1|	-	5.5e-30	104.7	0.0	7.2e-30	104.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336253798|ref|YP_004596905.1|	-	1.1e-09	38.6	0.1	0.00062	19.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336253798|ref|YP_004596905.1|	-	8.5e-05	22.1	0.0	0.00047	19.7	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336253798|ref|YP_004596905.1|	-	0.00011	22.6	0.2	0.00017	22.0	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336253798|ref|YP_004596905.1|	-	0.00035	20.3	0.1	0.00058	19.5	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|336253798|ref|YP_004596905.1|	-	0.00042	20.5	0.2	0.005	17.0	0.2	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.6	gi|336253798|ref|YP_004596905.1|	-	0.0028	18.2	0.0	0.0038	17.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|336253798|ref|YP_004596905.1|	-	0.0095	15.2	0.0	0.016	14.5	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_25	PF13481.6	gi|336253798|ref|YP_004596905.1|	-	0.012	15.1	2.7	0.055	13.0	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|336253798|ref|YP_004596905.1|	-	0.015	15.1	0.0	0.031	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|336253798|ref|YP_004596905.1|	-	0.026	14.5	0.1	0.044	13.7	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
T2SSE	PF00437.20	gi|336253798|ref|YP_004596905.1|	-	0.027	13.5	0.5	0.079	12.0	0.0	1.9	3	0	0	3	3	3	0	Type	II/IV	secretion	system	protein
cobW	PF02492.19	gi|336253798|ref|YP_004596905.1|	-	0.033	13.8	0.1	0.062	12.9	0.1	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|336253798|ref|YP_004596905.1|	-	0.041	14.2	0.2	0.078	13.2	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|336253798|ref|YP_004596905.1|	-	0.054	13.7	0.1	0.12	12.6	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
AAA_33	PF13671.6	gi|336253798|ref|YP_004596905.1|	-	0.068	13.3	0.4	0.11	12.6	0.4	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|336253798|ref|YP_004596905.1|	-	0.11	12.2	0.0	0.15	11.8	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|336253798|ref|YP_004596905.1|	-	0.14	12.2	0.1	0.4	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|336253798|ref|YP_004596905.1|	-	0.14	11.5	0.0	0.22	10.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF3584	PF12128.8	gi|336253798|ref|YP_004596905.1|	-	0.16	9.4	0.0	0.21	9.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
RsgA_GTPase	PF03193.16	gi|336253798|ref|YP_004596905.1|	-	0.17	11.8	0.0	0.3	11.0	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
TsaE	PF02367.17	gi|336253798|ref|YP_004596905.1|	-	0.2	11.7	0.0	0.33	10.9	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
BioY	PF02632.14	gi|336253799|ref|YP_004596906.1|	-	1.7e-38	131.7	20.3	2.7e-38	131.1	20.3	1.2	1	0	0	1	1	1	1	BioY	family
DUF2269	PF10027.9	gi|336253799|ref|YP_004596906.1|	-	0.013	15.6	0.9	0.013	15.6	0.9	2.3	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
ECF_trnsprt	PF12822.7	gi|336253799|ref|YP_004596906.1|	-	0.035	14.2	24.4	0.058	13.5	24.4	1.3	1	1	0	1	1	1	0	ECF	transporter,	substrate-specific	component
CARDB	PF07705.11	gi|336253800|ref|YP_004596907.1|	-	1.3e-06	28.5	5.4	6.9e-06	26.3	2.5	3.5	2	0	0	2	2	2	1	CARDB
EMP24_GP25L	PF01105.24	gi|336253800|ref|YP_004596907.1|	-	0.00051	20.0	0.2	13	5.6	0.0	4.4	4	0	0	4	4	4	2	emp24/gp25L/p24	family/GOLD
DUF4981	PF16353.5	gi|336253800|ref|YP_004596907.1|	-	0.17	12.4	9.7	3	8.4	0.2	5.2	4	1	1	5	5	5	0	Domain	of	unknown	function(DUF4981)
DUF2536	PF10750.9	gi|336253800|ref|YP_004596907.1|	-	0.18	11.7	1.0	2.3	8.2	0.1	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2536)
VAPB_antitox	PF02697.14	gi|336253802|ref|YP_004596909.1|	-	0.0011	19.6	0.7	0.0011	19.6	0.7	1.0	1	0	0	1	1	1	1	Putative	antitoxin
RHH_1	PF01402.21	gi|336253802|ref|YP_004596909.1|	-	0.029	14.3	3.3	0.1	12.6	1.3	2.0	1	1	1	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Chorion_3	PF05387.11	gi|336253803|ref|YP_004596910.1|	-	0.083	12.5	5.0	0.089	12.4	5.0	1.1	1	0	0	1	1	1	0	Chorion	family	3
Serglycin	PF04360.12	gi|336253803|ref|YP_004596910.1|	-	0.22	11.4	7.4	0.16	11.9	2.0	2.2	1	1	1	2	2	2	0	Serglycin
Tubulin	PF00091.25	gi|336253803|ref|YP_004596910.1|	-	0.44	10.7	4.9	1.5	8.9	1.1	2.1	1	1	1	2	2	2	0	Tubulin/FtsZ	family,	GTPase	domain
Hexapep	PF00132.24	gi|336253804|ref|YP_004596911.1|	-	1.4e-17	62.6	2.6	2.5e-06	27.0	0.3	3.4	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336253804|ref|YP_004596911.1|	-	5e-07	29.4	4.2	6.2e-06	25.9	0.4	3.0	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
Lactamase_B	PF00753.27	gi|336253805|ref|YP_004596912.1|	-	1.2e-11	45.1	13.4	2.8e-11	43.8	10.0	2.8	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336253805|ref|YP_004596912.1|	-	1.4e-05	24.7	1.0	2.7e-05	23.8	1.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|336253805|ref|YP_004596912.1|	-	0.0028	17.1	0.0	0.0059	16.1	0.0	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
OsmC	PF02566.19	gi|336253806|ref|YP_004596913.1|	-	6.2e-11	42.7	0.0	8.1e-11	42.3	0.0	1.2	1	0	0	1	1	1	1	OsmC-like	protein
YdjM	PF04307.14	gi|336253807|ref|YP_004596914.1|	-	1.6e-12	47.1	11.5	2.3e-12	46.6	11.5	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Voltage_CLC	PF00654.20	gi|336253807|ref|YP_004596914.1|	-	0.0048	16.2	3.0	0.006	15.9	3.0	1.2	1	0	0	1	1	1	1	Voltage	gated	chloride	channel
DUF2227	PF09988.9	gi|336253807|ref|YP_004596914.1|	-	0.028	14.3	0.4	0.058	13.3	0.2	1.6	1	1	0	1	1	1	0	Uncharacterized	metal-binding	protein	(DUF2227)
DUF1614	PF07758.11	gi|336253807|ref|YP_004596914.1|	-	0.053	13.5	0.9	0.065	13.2	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1614)
Lactamase_B_3	PF13483.6	gi|336253808|ref|YP_004596915.1|	-	1e-18	67.7	0.9	1.7e-18	67.1	0.9	1.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|336253808|ref|YP_004596915.1|	-	1.1e-14	54.4	1.3	1.6e-14	53.9	1.3	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336253808|ref|YP_004596915.1|	-	2.1e-07	31.2	3.8	2.1e-07	31.2	3.8	1.9	1	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Ribosomal_L12_N	PF16320.5	gi|336253808|ref|YP_004596915.1|	-	0.031	14.0	0.0	0.11	12.2	0.0	1.9	2	0	0	2	2	2	0	Ribosomal	protein	L7/L12	dimerisation	domain
tRNA_anti-codon	PF01336.25	gi|336253809|ref|YP_004596916.1|	-	0.098	12.7	0.1	0.21	11.6	0.1	1.7	1	1	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
Complex1_LYR_2	PF13233.6	gi|336253809|ref|YP_004596916.1|	-	0.11	13.2	0.0	0.12	13.1	0.0	1.1	1	0	0	1	1	1	0	Complex1_LYR-like
tRNA_anti-codon	PF01336.25	gi|336253810|ref|YP_004596917.1|	-	4e-11	42.8	0.1	1.1e-10	41.3	0.1	1.9	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|336253810|ref|YP_004596917.1|	-	1.9e-08	34.5	0.0	5.7e-08	33.0	0.0	1.9	1	0	0	1	1	1	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|336253810|ref|YP_004596917.1|	-	5.8e-05	23.2	0.0	0.00014	22.0	0.0	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1_2	PF13509.6	gi|336253810|ref|YP_004596917.1|	-	0.0092	16.0	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	1	S1	domain
SHOCT	PF09851.9	gi|336253811|ref|YP_004596918.1|	-	2.2e-09	36.8	5.0	4.1e-09	35.9	5.0	1.5	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|336253811|ref|YP_004596918.1|	-	4e-06	26.8	7.2	8.5e-06	25.7	7.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.12	gi|336253811|ref|YP_004596918.1|	-	0.035	14.1	0.9	0.035	14.1	0.9	1.5	2	0	0	2	2	2	0	Gas	vesicle	protein	G
DUF2631	PF10939.8	gi|336253811|ref|YP_004596918.1|	-	0.15	11.9	0.1	0.37	10.7	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2631)
PhaG_MnhG_YufB	PF03334.14	gi|336253812|ref|YP_004596919.1|	-	8.6e-25	86.8	7.1	1.1e-24	86.5	7.1	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
MrpF_PhaF	PF04066.13	gi|336253813|ref|YP_004596920.1|	-	6.7e-18	64.8	8.9	6.7e-18	64.8	8.9	1.9	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF5336	PF17270.2	gi|336253813|ref|YP_004596920.1|	-	0.12	11.9	5.9	0.14	11.8	5.9	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5336)
IncF	PF17626.2	gi|336253813|ref|YP_004596920.1|	-	0.18	12.2	5.2	0.13	12.6	3.5	1.6	1	1	0	1	1	1	0	Inclusion	membrane	protein	F
MNHE	PF01899.16	gi|336253814|ref|YP_004596921.1|	-	2.8e-37	127.7	0.6	3.5e-37	127.4	0.6	1.1	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Proton_antipo_M	PF00361.20	gi|336253815|ref|YP_004596922.1|	-	1.7e-51	175.2	19.0	1.1e-25	90.4	5.0	2.6	2	0	0	2	2	2	2	Proton-conducting	membrane	transporter
NADHdeh_related	PF10125.9	gi|336253815|ref|YP_004596922.1|	-	0.00063	19.2	2.8	0.00063	19.2	2.8	3.0	3	0	0	3	3	3	2	NADH	dehydrogenase	I,	subunit	N	related	protein
Proton_antipo_N	PF00662.20	gi|336253815|ref|YP_004596922.1|	-	0.0042	17.1	0.3	0.014	15.4	0.3	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.24	gi|336253816|ref|YP_004596923.1|	-	3.1e-30	103.9	1.2	3.7e-30	103.6	1.2	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Herpes_glycop	PF01528.16	gi|336253816|ref|YP_004596923.1|	-	0.091	11.6	0.3	0.11	11.3	0.3	1.1	1	0	0	1	1	1	0	Herpesvirus	glycoprotein	M
Phage_holin_2_3	PF16080.5	gi|336253816|ref|YP_004596923.1|	-	0.18	11.5	0.9	8.1	6.3	0.2	2.4	2	0	0	2	2	2	0	Bacteriophage	holin	family	HP1
MnhB	PF04039.13	gi|336253817|ref|YP_004596924.1|	-	1e-35	122.7	7.8	1.3e-35	122.4	7.8	1.1	1	0	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
Proton_antipo_M	PF00361.20	gi|336253818|ref|YP_004596925.1|	-	1.1e-69	234.9	16.0	1.1e-69	234.9	16.0	2.6	3	1	0	3	3	3	1	Proton-conducting	membrane	transporter
DUF4040	PF13244.6	gi|336253818|ref|YP_004596925.1|	-	4e-15	55.7	11.1	4e-15	55.7	11.1	5.4	4	1	1	5	5	5	1	Domain	of	unknown	function	(DUF4040)
Proton_antipo_N	PF00662.20	gi|336253818|ref|YP_004596925.1|	-	4.2e-12	45.9	0.9	4.2e-12	45.9	0.9	2.8	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q3	PF00499.20	gi|336253818|ref|YP_004596925.1|	-	0.0025	17.5	7.5	0.0025	17.5	7.5	5.7	3	2	0	4	4	4	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
Radical_SAM	PF04055.21	gi|336253819|ref|YP_004596926.1|	-	7.9e-27	94.7	0.1	9e-26	91.2	0.0	2.3	2	0	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM_C	PF16199.5	gi|336253819|ref|YP_004596926.1|	-	1.4e-24	85.9	0.0	2.4e-24	85.1	0.0	1.4	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|336253819|ref|YP_004596926.1|	-	2.6e-09	37.4	0.0	6.4e-09	36.1	0.0	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336253819|ref|YP_004596926.1|	-	1.4e-05	25.1	0.2	3e-05	24.0	0.2	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336253819|ref|YP_004596926.1|	-	0.08	13.4	0.1	0.17	12.3	0.1	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Glyco_hydro_43	PF04616.14	gi|336253820|ref|YP_004596927.1|	-	3.9e-09	36.2	0.1	5.8e-09	35.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
HpcH_HpaI	PF03328.14	gi|336253822|ref|YP_004596929.1|	-	5.6e-45	153.2	0.7	6.7e-45	152.9	0.7	1.0	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
LUD_dom	PF02589.15	gi|336253823|ref|YP_004596930.1|	-	6.3e-28	97.8	0.2	7.7e-28	97.5	0.2	1.1	1	0	0	1	1	1	1	LUD	domain
Zip	PF02535.22	gi|336253824|ref|YP_004596931.1|	-	1.1e-16	61.0	3.0	1.1e-16	61.0	3.0	2.1	2	0	0	2	2	2	2	ZIP	Zinc	transporter
FbpA	PF05833.11	gi|336253827|ref|YP_004596934.1|	-	4.8e-82	276.1	0.0	6.6e-82	275.7	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|336253827|ref|YP_004596934.1|	-	1.5e-22	80.3	0.0	2.9e-22	79.4	0.0	1.5	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|336253827|ref|YP_004596934.1|	-	0.00028	21.0	0.0	0.0018	18.5	0.0	2.4	2	1	0	2	2	2	1	NFACT	protein	RNA	binding	domain
DUF2786	PF10979.8	gi|336253827|ref|YP_004596934.1|	-	0.012	15.5	0.1	0.061	13.2	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2786)
LEDGF	PF11467.8	gi|336253827|ref|YP_004596934.1|	-	0.093	12.4	0.7	3	7.5	0.0	2.9	2	1	1	3	3	3	0	Lens	epithelium-derived	growth	factor	(LEDGF)
DUF5590	PF17881.1	gi|336253827|ref|YP_004596934.1|	-	0.16	12.1	0.1	0.67	10.1	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5590)
MFS_1	PF07690.16	gi|336253829|ref|YP_004596936.1|	-	8.3e-40	136.8	76.2	6.9e-31	107.5	45.5	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|336253829|ref|YP_004596936.1|	-	2.4e-05	23.4	22.5	5.1e-05	22.3	12.2	2.2	1	1	1	2	2	2	2	MFS_1	like	family
Colicin	PF01024.19	gi|336253830|ref|YP_004596937.1|	-	0.038	13.9	6.7	0.87	9.5	0.7	2.1	2	0	0	2	2	2	0	Colicin	pore	forming	domain
eRF1_1	PF03463.15	gi|336253831|ref|YP_004596938.1|	-	1.9e-24	86.1	0.1	3.2e-24	85.4	0.1	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|336253831|ref|YP_004596938.1|	-	1.3e-23	83.6	0.5	3.6e-23	82.2	0.0	2.0	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|336253831|ref|YP_004596938.1|	-	1e-08	35.6	0.2	3.2e-07	30.7	0.2	2.3	1	1	0	1	1	1	1	eRF1	domain	2
Tetraspanin	PF00335.20	gi|336253832|ref|YP_004596939.1|	-	0.38	10.4	1.0	0.56	9.9	1.0	1.3	1	0	0	1	1	1	0	Tetraspanin	family
TrmB	PF01978.19	gi|336253833|ref|YP_004596940.1|	-	1.8e-19	69.3	0.0	3.4e-19	68.5	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336253833|ref|YP_004596940.1|	-	0.00052	19.8	0.0	0.00091	19.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
DUF2250	PF10007.9	gi|336253833|ref|YP_004596940.1|	-	0.00059	19.9	0.0	0.0011	19.0	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR_2	PF12802.7	gi|336253833|ref|YP_004596940.1|	-	0.00087	19.1	0.0	0.0021	17.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Penicillinase_R	PF03965.16	gi|336253833|ref|YP_004596940.1|	-	0.013	15.8	0.1	0.038	14.3	0.0	1.8	2	0	0	2	2	2	0	Penicillinase	repressor
HTH_27	PF13463.6	gi|336253833|ref|YP_004596940.1|	-	0.019	15.5	0.0	0.09	13.3	0.0	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.11	gi|336253833|ref|YP_004596940.1|	-	0.036	14.0	0.0	0.18	11.8	0.0	2.1	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
HTH_20	PF12840.7	gi|336253833|ref|YP_004596940.1|	-	0.053	13.6	0.0	0.16	12.1	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|336253833|ref|YP_004596940.1|	-	0.058	13.3	0.1	0.17	11.8	0.0	1.8	2	0	0	2	2	2	0	MarR	family
MMPL	PF03176.15	gi|336253834|ref|YP_004596941.1|	-	8e-29	100.6	44.7	2.1e-17	63.1	18.8	3.7	2	2	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.8	gi|336253834|ref|YP_004596941.1|	-	1.8e-05	24.6	14.9	0.0039	17.0	2.8	2.3	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|336253834|ref|YP_004596941.1|	-	5.4e-05	21.5	32.6	0.00083	17.6	8.8	3.2	3	0	0	3	3	3	2	Patched	family
SecD_SecF	PF02355.16	gi|336253834|ref|YP_004596941.1|	-	0.00082	18.8	8.6	0.00082	18.8	8.6	2.5	2	0	0	2	2	2	1	Protein	export	membrane	protein
ACR_tran	PF00873.19	gi|336253834|ref|YP_004596941.1|	-	0.045	11.4	25.9	0.016	12.9	10.0	2.2	2	0	0	2	2	2	0	AcrB/AcrD/AcrF	family
RseC_MucC	PF04246.12	gi|336253834|ref|YP_004596941.1|	-	0.087	12.8	12.0	1.5	8.8	2.2	3.5	2	1	1	3	3	3	0	Positive	regulator	of	sigma(E),	RseC/MucC
BLOC1_2	PF10046.9	gi|336253834|ref|YP_004596941.1|	-	0.35	11.2	8.4	18	5.7	1.0	3.7	3	0	0	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Formyl_trans_N	PF00551.19	gi|336253835|ref|YP_004596942.1|	-	3.6e-09	36.6	0.0	4.8e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Formyl	transferase
Lactamase_B_2	PF12706.7	gi|336253836|ref|YP_004596943.1|	-	2.2e-15	56.7	0.3	2.7e-15	56.4	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336253836|ref|YP_004596943.1|	-	2.6e-14	53.7	3.0	2.6e-14	53.7	3.0	1.7	1	1	1	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|336253836|ref|YP_004596943.1|	-	0.033	14.1	0.0	0.059	13.3	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|336253836|ref|YP_004596943.1|	-	0.041	13.3	0.0	0.066	12.6	0.0	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
PDEase_II	PF02112.15	gi|336253836|ref|YP_004596943.1|	-	0.3	10.2	0.3	0.44	9.6	0.3	1.2	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
Bac_rhodopsin	PF01036.18	gi|336253837|ref|YP_004596944.1|	-	1.6e-58	197.9	22.4	1.8e-58	197.8	22.4	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
MCPsignal	PF00015.21	gi|336253838|ref|YP_004596945.1|	-	4.3e-40	137.3	59.0	5.7e-39	133.7	26.8	4.2	2	1	2	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Htr2	PF17909.1	gi|336253838|ref|YP_004596945.1|	-	2e-30	104.9	20.3	2e-30	104.9	20.3	4.2	5	1	0	5	5	3	1	Htr2	transmembrane	domain
HAMP	PF00672.25	gi|336253838|ref|YP_004596945.1|	-	1.4e-12	47.8	14.1	6e-10	39.3	0.4	4.6	5	2	0	5	5	3	2	HAMP	domain
NPV_P10	PF05531.12	gi|336253838|ref|YP_004596945.1|	-	0.00078	19.9	20.6	0.12	12.9	4.6	4.5	3	1	1	4	4	4	2	Nucleopolyhedrovirus	P10	protein
DUF1664	PF07889.12	gi|336253838|ref|YP_004596945.1|	-	0.00098	19.2	31.7	0.014	15.4	2.4	5.3	3	2	2	5	5	5	2	Protein	of	unknown	function	(DUF1664)
DUF948	PF06103.11	gi|336253838|ref|YP_004596945.1|	-	0.0018	18.5	41.9	0.0091	16.2	3.6	6.8	4	2	4	8	8	7	2	Bacterial	protein	of	unknown	function	(DUF948)
Syntaxin-6_N	PF09177.11	gi|336253838|ref|YP_004596945.1|	-	0.012	16.1	4.8	0.012	16.1	4.8	4.6	3	2	1	4	4	4	0	Syntaxin	6,	N-terminal
Spc7	PF08317.11	gi|336253838|ref|YP_004596945.1|	-	0.013	14.4	36.2	0.18	10.7	6.4	3.1	2	1	1	3	3	3	0	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|336253838|ref|YP_004596945.1|	-	0.098	12.7	33.4	0.6	10.1	2.2	5.2	3	2	2	5	5	5	0	Laminin	Domain	II
DUF489	PF04356.12	gi|336253838|ref|YP_004596945.1|	-	0.12	12.3	9.2	1.1	9.2	0.6	3.8	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF489)
Atg14	PF10186.9	gi|336253838|ref|YP_004596945.1|	-	0.19	10.8	15.5	0.43	9.6	0.9	3.1	2	1	1	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Sec34	PF04136.15	gi|336253838|ref|YP_004596945.1|	-	0.48	10.3	19.8	4.2	7.3	1.1	5.0	3	2	3	6	6	6	0	Sec34-like	family
ApoO	PF09769.9	gi|336253838|ref|YP_004596945.1|	-	0.52	10.3	7.0	1.8	8.5	0.1	3.6	3	2	1	4	4	4	0	Apolipoprotein	O
Fib_alpha	PF08702.10	gi|336253838|ref|YP_004596945.1|	-	0.65	10.2	18.8	3	8.0	2.6	4.1	3	2	1	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Cytomega_UL84	PF06284.11	gi|336253838|ref|YP_004596945.1|	-	1.1	7.6	7.7	2.2	6.6	7.7	1.4	1	0	0	1	1	1	0	Cytomegalovirus	UL84	protein
YabA	PF06156.13	gi|336253838|ref|YP_004596945.1|	-	1.4	9.6	20.6	0.37	11.5	2.6	4.9	2	1	1	3	3	3	0	Initiation	control	protein	YabA
DUF3584	PF12128.8	gi|336253838|ref|YP_004596945.1|	-	1.9	5.9	43.6	0.081	10.4	23.4	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
COG2	PF06148.11	gi|336253838|ref|YP_004596945.1|	-	3.2	7.8	28.6	4	7.5	0.2	5.7	2	2	4	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4201	PF13870.6	gi|336253838|ref|YP_004596945.1|	-	3.2	7.4	10.4	11	5.7	4.4	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4201)
DUF4200	PF13863.6	gi|336253838|ref|YP_004596945.1|	-	3.8	7.9	33.6	0.42	11.0	11.9	3.6	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4200)
LOH1CR12	PF10158.9	gi|336253838|ref|YP_004596945.1|	-	4.1	7.4	9.9	2.6	8.1	0.5	3.1	2	2	0	2	2	2	0	Tumour	suppressor	protein
Mod_r	PF07200.13	gi|336253838|ref|YP_004596945.1|	-	4.7	7.3	31.9	0.15	12.2	8.6	3.9	1	1	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF5089	PF17002.5	gi|336253838|ref|YP_004596945.1|	-	4.9	7.0	34.9	2.8	7.8	14.1	3.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5089)
DUF883	PF05957.13	gi|336253838|ref|YP_004596945.1|	-	5.2	7.8	40.3	8.4	7.1	7.9	5.9	3	2	1	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF883)
LXG	PF04740.12	gi|336253838|ref|YP_004596945.1|	-	5.4	6.7	29.2	0.99	9.1	7.0	3.5	2	2	1	3	3	3	0	LXG	domain	of	WXG	superfamily
Seryl_tRNA_N	PF02403.22	gi|336253838|ref|YP_004596945.1|	-	5.8	7.2	35.2	4.7	7.5	1.4	5.1	3	2	3	6	6	6	0	Seryl-tRNA	synthetase	N-terminal	domain
RPW8	PF05659.11	gi|336253838|ref|YP_004596945.1|	-	6.5	6.4	9.3	6.1	6.5	0.4	4.0	3	1	0	4	4	4	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
TMPIT	PF07851.13	gi|336253838|ref|YP_004596945.1|	-	7	5.8	21.6	3.9	6.6	2.4	3.7	2	1	2	4	4	4	0	TMPIT-like	protein
CPBP	PF02517.16	gi|336253839|ref|YP_004596946.1|	-	1.9e-10	41.0	8.0	1.9e-10	41.0	8.0	2.1	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Glycophorin_A	PF01102.18	gi|336253839|ref|YP_004596946.1|	-	0.072	13.3	0.6	0.38	11.0	0.1	2.2	3	0	0	3	3	3	0	Glycophorin	A
NDUF_B12	PF08122.12	gi|336253839|ref|YP_004596946.1|	-	0.2	11.8	1.1	8.9	6.4	0.1	3.0	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
DEAD_assoc	PF08494.11	gi|336253840|ref|YP_004596947.1|	-	7.9e-51	172.6	0.6	1.6e-50	171.6	0.6	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|336253840|ref|YP_004596947.1|	-	1.4e-29	103.1	0.0	2e-28	99.3	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|336253840|ref|YP_004596947.1|	-	2.9e-18	66.2	0.1	1.6e-16	60.6	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|336253840|ref|YP_004596947.1|	-	7e-08	32.7	0.0	4.1e-07	30.2	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.6	gi|336253840|ref|YP_004596947.1|	-	0.00028	21.2	0.0	0.0029	17.9	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
SNF2_N	PF00176.23	gi|336253840|ref|YP_004596947.1|	-	0.013	14.3	0.0	0.025	13.3	0.0	1.4	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
AAA_19	PF13245.6	gi|336253840|ref|YP_004596947.1|	-	0.019	15.3	0.0	0.11	12.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
UvrD-helicase	PF00580.21	gi|336253840|ref|YP_004596947.1|	-	0.094	12.2	0.0	3.8	6.9	0.0	2.4	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
YdjM	PF04307.14	gi|336253841|ref|YP_004596948.1|	-	0.02	14.2	2.3	0.044	13.1	2.3	1.6	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
AIRS_C	PF02769.22	gi|336253842|ref|YP_004596949.1|	-	1.8e-27	96.4	2.6	3.3e-27	95.5	2.6	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|336253842|ref|YP_004596949.1|	-	3.8e-16	59.5	0.6	3.8e-16	59.5	0.6	2.0	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
PAP2	PF01569.21	gi|336253845|ref|YP_004596952.1|	-	4e-19	68.7	1.2	4e-19	68.7	1.2	2.1	2	1	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|336253845|ref|YP_004596952.1|	-	3.3e-07	30.2	16.5	1.3e-06	28.2	11.2	3.0	2	1	0	2	2	2	1	PAP2	superfamily
CoA_transf_3	PF02515.17	gi|336253846|ref|YP_004596953.1|	-	2.3e-124	415.3	0.0	2.7e-124	415.0	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
Aldedh	PF00171.22	gi|336253847|ref|YP_004596954.1|	-	1.6e-19	69.8	0.2	1.1e-17	63.7	0.2	2.1	2	0	0	2	2	2	2	Aldehyde	dehydrogenase	family
TctA	PF01970.16	gi|336253848|ref|YP_004596955.1|	-	1.1e-126	422.9	38.8	1.5e-126	422.5	38.8	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
TctB	PF07331.11	gi|336253849|ref|YP_004596956.1|	-	4.1e-15	56.2	4.4	7.1e-15	55.5	4.4	1.4	1	1	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctB	family
TctC	PF03401.14	gi|336253850|ref|YP_004596957.1|	-	5.9e-16	58.3	0.0	8.2e-16	57.9	0.0	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	family	receptor
Phosphonate-bd	PF12974.7	gi|336253850|ref|YP_004596957.1|	-	0.0035	17.0	0.0	0.0071	16.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
UCR_Fe-S_N	PF10399.9	gi|336253850|ref|YP_004596957.1|	-	0.058	12.7	1.2	0.13	11.6	1.2	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Aldo_ket_red	PF00248.21	gi|336253851|ref|YP_004596958.1|	-	6.5e-68	229.1	0.0	7.3e-68	228.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Trimer_CC	PF08954.11	gi|336253851|ref|YP_004596958.1|	-	0.15	11.6	1.0	10	5.8	0.1	2.6	2	0	0	2	2	2	0	Trimerisation	motif
AAA_11	PF13086.6	gi|336253852|ref|YP_004596959.1|	-	4.8e-39	134.7	0.5	1.2e-18	67.8	0.4	2.6	1	1	1	2	2	2	2	AAA	domain
AAA_12	PF13087.6	gi|336253852|ref|YP_004596959.1|	-	1.2e-38	132.7	0.0	1.9e-38	132.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Dna2	PF08696.11	gi|336253852|ref|YP_004596959.1|	-	1.9e-19	70.3	0.0	6.6e-18	65.3	0.0	2.2	1	1	0	1	1	1	1	DNA	replication	factor	Dna2
AAA_30	PF13604.6	gi|336253852|ref|YP_004596959.1|	-	3.1e-17	62.9	0.8	9.6e-17	61.3	0.4	2.1	2	0	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|336253852|ref|YP_004596959.1|	-	5.6e-14	52.7	0.1	3.7e-13	50.0	0.0	2.1	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
AAA_19	PF13245.6	gi|336253852|ref|YP_004596959.1|	-	5.1e-13	49.6	0.1	2.5e-12	47.3	0.2	2.2	2	1	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|336253852|ref|YP_004596959.1|	-	8.3e-07	29.0	0.0	0.0033	17.2	0.0	3.1	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
UvrD-helicase	PF00580.21	gi|336253852|ref|YP_004596959.1|	-	1.1e-05	25.2	0.0	1.8e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
Cas_Cas4	PF01930.17	gi|336253852|ref|YP_004596959.1|	-	5.2e-05	23.4	0.0	0.00032	20.9	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
Helicase_RecD	PF05127.14	gi|336253852|ref|YP_004596959.1|	-	7.2e-05	22.7	0.1	0.00027	20.8	0.0	2.0	2	0	0	2	2	2	1	Helicase
AAA_22	PF13401.6	gi|336253852|ref|YP_004596959.1|	-	0.00047	20.4	0.0	0.0017	18.6	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336253852|ref|YP_004596959.1|	-	0.00088	19.7	0.4	0.00088	19.7	0.4	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
ResIII	PF04851.15	gi|336253852|ref|YP_004596959.1|	-	0.0015	18.6	0.0	0.0032	17.5	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF4350	PF14258.6	gi|336253852|ref|YP_004596959.1|	-	0.0072	16.7	0.1	57	4.2	0.0	4.8	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4350)
PhoH	PF02562.16	gi|336253852|ref|YP_004596959.1|	-	0.0086	15.5	0.1	0.033	13.6	0.1	1.8	1	1	1	2	2	2	1	PhoH-like	protein
AAA	PF00004.29	gi|336253852|ref|YP_004596959.1|	-	0.011	16.2	0.1	0.037	14.5	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|336253852|ref|YP_004596959.1|	-	0.012	15.1	0.0	0.03	13.8	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|336253852|ref|YP_004596959.1|	-	0.021	14.5	0.0	0.042	13.6	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
UvrD_C_2	PF13538.6	gi|336253852|ref|YP_004596959.1|	-	0.029	14.2	0.0	0.058	13.2	0.0	1.5	1	0	0	1	1	1	0	UvrD-like	helicase	C-terminal	domain
T2SSE	PF00437.20	gi|336253852|ref|YP_004596959.1|	-	0.067	12.2	0.0	0.15	11.1	0.0	1.6	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
PDZ_6	PF17820.1	gi|336253852|ref|YP_004596959.1|	-	0.069	13.0	0.0	0.2	11.5	0.0	1.8	1	0	0	1	1	1	0	PDZ	domain
AAA_24	PF13479.6	gi|336253852|ref|YP_004596959.1|	-	0.081	12.6	0.0	0.42	10.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|336253852|ref|YP_004596959.1|	-	0.085	13.4	0.1	4.8	7.7	0.0	3.0	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|336253852|ref|YP_004596959.1|	-	0.09	12.4	0.1	0.36	10.4	0.0	2.1	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|336253852|ref|YP_004596959.1|	-	0.099	12.2	0.8	0.23	11.0	0.0	2.1	2	0	0	2	2	1	0	AAA	domain
DUF2075	PF09848.9	gi|336253852|ref|YP_004596959.1|	-	0.1	11.8	0.0	0.41	9.8	0.0	1.9	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_5	PF07728.14	gi|336253852|ref|YP_004596959.1|	-	0.1	12.6	0.1	0.39	10.7	0.0	2.0	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|336253852|ref|YP_004596959.1|	-	0.13	12.0	0.0	0.29	10.8	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
PIF1	PF05970.14	gi|336253852|ref|YP_004596959.1|	-	0.21	10.7	0.0	4	6.5	0.0	2.1	2	0	0	2	2	2	0	PIF1-like	helicase
SPW	PF03779.14	gi|336253853|ref|YP_004596960.1|	-	2.8e-05	23.6	24.0	0.0003	20.3	6.5	2.5	2	1	0	2	2	2	2	SPW	repeat
NVEALA	PF14055.6	gi|336253853|ref|YP_004596960.1|	-	0.33	11.0	2.4	3.3	7.8	0.0	2.5	3	0	0	3	3	3	0	NVEALA	protein
Phage_holin_5_2	PF16079.5	gi|336253853|ref|YP_004596960.1|	-	0.34	11.3	7.1	0.45	10.9	0.2	2.1	2	0	0	2	2	2	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
FeoB_associated	PF12669.7	gi|336253853|ref|YP_004596960.1|	-	0.71	10.3	0.0	0.71	10.3	0.0	3.0	3	1	1	4	4	4	0	FeoB-associated	Cys-rich	membrane	protein
PGPGW	PF09656.10	gi|336253854|ref|YP_004596961.1|	-	0.0034	16.9	0.5	0.0056	16.2	0.0	1.6	2	0	0	2	2	2	1	Putative	transmembrane	protein	(PGPGW)
HHH_2	PF12826.7	gi|336253855|ref|YP_004596962.1|	-	0.00027	21.0	1.0	0.025	14.6	0.7	2.4	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
COG2	PF06148.11	gi|336253855|ref|YP_004596962.1|	-	0.041	14.0	0.1	0.086	12.9	0.1	1.3	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF5595	PF18077.1	gi|336253855|ref|YP_004596962.1|	-	0.35	11.0	3.6	0.21	11.7	1.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5595)
Peripla_BP_2	PF01497.18	gi|336253856|ref|YP_004596963.1|	-	6.4e-16	58.6	0.0	9.3e-16	58.1	0.0	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
Clenterotox	PF03505.14	gi|336253856|ref|YP_004596963.1|	-	0.091	12.4	0.1	0.15	11.6	0.1	1.2	1	0	0	1	1	1	0	Clostridium	enterotoxin
B12-binding	PF02310.19	gi|336253856|ref|YP_004596963.1|	-	0.12	12.5	0.0	0.84	9.7	0.0	2.1	2	0	0	2	2	2	0	B12	binding	domain
DUF3225	PF11533.8	gi|336253857|ref|YP_004596964.1|	-	6e-05	22.8	0.1	9.6e-05	22.1	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3225)
SnoaL_3	PF13474.6	gi|336253857|ref|YP_004596964.1|	-	0.016	15.4	2.1	0.028	14.7	0.7	2.0	2	1	0	2	2	2	0	SnoaL-like	domain
Zincin_2	PF10103.9	gi|336253859|ref|YP_004596966.1|	-	9.4e-64	215.8	2.9	1.5e-33	116.5	0.7	2.0	1	1	1	2	2	2	2	Zincin-like	metallopeptidase
BLOC1S3	PF15753.5	gi|336253860|ref|YP_004596967.1|	-	0.12	12.5	1.8	0.15	12.2	1.8	1.1	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex	1	subunit	3
LSM	PF01423.22	gi|336253861|ref|YP_004596968.1|	-	4e-19	68.1	0.0	4.6e-19	67.9	0.0	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|336253861|ref|YP_004596968.1|	-	1.5e-07	31.4	0.0	1.9e-07	31.1	0.0	1.1	1	0	0	1	1	1	1	Ataxin	2	SM	domain
Ribosomal_L37e	PF01907.19	gi|336253862|ref|YP_004596969.1|	-	5e-23	81.0	12.1	5.5e-23	80.9	12.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
zinc_ribbon_6	PF14599.6	gi|336253862|ref|YP_004596969.1|	-	0.061	13.3	2.1	0.086	12.9	2.1	1.2	1	0	0	1	1	1	0	Zinc-ribbon
HypA	PF01155.19	gi|336253862|ref|YP_004596969.1|	-	0.064	13.3	2.3	0.07	13.1	2.3	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|336253862|ref|YP_004596969.1|	-	0.068	12.6	2.5	3	7.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336253862|ref|YP_004596969.1|	-	0.099	12.4	5.5	0.58	9.9	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|336253862|ref|YP_004596969.1|	-	0.49	10.3	5.9	1.2	9.0	0.5	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|336253862|ref|YP_004596969.1|	-	0.72	9.8	7.1	1.3	9.0	7.0	1.5	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF4013	PF13197.6	gi|336253863|ref|YP_004596970.1|	-	1.5e-33	116.0	15.5	1.5e-33	116.0	15.5	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4013)
DUF2189	PF09955.9	gi|336253863|ref|YP_004596970.1|	-	0.0042	17.3	11.9	0.0084	16.4	0.3	3.0	2	1	1	3	3	3	2	Predicted	integral	membrane	protein	(DUF2189)
PALP	PF00291.25	gi|336253864|ref|YP_004596971.1|	-	6.4e-64	216.2	1.9	7.5e-64	216.0	1.9	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
TF_Zn_Ribbon	PF08271.12	gi|336253864|ref|YP_004596971.1|	-	0.023	14.2	2.5	0.064	12.8	2.5	1.8	1	0	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|336253864|ref|YP_004596971.1|	-	0.028	14.4	0.3	0.051	13.6	0.3	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|336253864|ref|YP_004596971.1|	-	0.032	14.3	1.7	0.032	14.3	1.7	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|336253864|ref|YP_004596971.1|	-	0.095	12.7	0.2	0.18	11.8	0.2	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-LYAR	PF08790.11	gi|336253864|ref|YP_004596971.1|	-	0.19	11.7	0.8	0.4	10.6	0.1	2.0	2	0	0	2	2	2	0	LYAR-type	C2HC	zinc	finger
PcrB	PF01884.17	gi|336253865|ref|YP_004596972.1|	-	1.2e-53	181.9	0.4	1.4e-53	181.7	0.4	1.0	1	0	0	1	1	1	1	PcrB	family
HTH_10	PF04967.12	gi|336253866|ref|YP_004596973.1|	-	1.6e-15	56.6	0.0	2.6e-15	56.0	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253866|ref|YP_004596973.1|	-	0.0021	17.9	4.8	0.0026	17.6	0.9	2.6	2	1	0	2	2	2	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336253866|ref|YP_004596973.1|	-	0.029	13.9	0.4	0.066	12.7	0.4	1.7	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|336253866|ref|YP_004596973.1|	-	0.034	14.0	0.2	0.079	12.8	0.2	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
UPF0122	PF04297.14	gi|336253866|ref|YP_004596973.1|	-	0.22	11.8	0.0	0.34	11.2	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HalOD1	PF18545.1	gi|336253867|ref|YP_004596974.1|	-	5.9e-24	84.1	0.0	7.1e-24	83.9	0.0	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF1499	PF07386.11	gi|336253867|ref|YP_004596974.1|	-	0.085	13.4	0.0	0.1	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1499)
HTH_10	PF04967.12	gi|336253869|ref|YP_004596976.1|	-	1.8e-15	56.5	0.3	2.9e-15	55.8	0.3	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|336253869|ref|YP_004596976.1|	-	0.00059	19.4	1.5	0.0095	15.6	0.6	2.8	2	1	0	2	2	2	1	Sigma-70,	region	4
LexA_DNA_bind	PF01726.16	gi|336253869|ref|YP_004596976.1|	-	0.011	15.5	0.1	0.032	14.0	0.1	1.8	1	1	0	1	1	1	0	LexA	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|336253869|ref|YP_004596976.1|	-	0.011	15.3	0.1	0.028	13.9	0.1	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336253869|ref|YP_004596976.1|	-	0.016	14.8	0.0	0.03	13.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
GerE	PF00196.19	gi|336253869|ref|YP_004596976.1|	-	0.033	13.7	0.0	0.17	11.5	0.0	2.0	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_5	PF01022.20	gi|336253869|ref|YP_004596976.1|	-	0.051	13.5	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
p450	PF00067.22	gi|336253870|ref|YP_004596977.1|	-	1.9e-95	320.3	0.0	2.3e-95	320.1	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
PIN	PF01850.21	gi|336253872|ref|YP_004596979.1|	-	6.4e-05	23.5	0.2	0.0001	22.8	0.2	1.3	1	0	0	1	1	1	1	PIN	domain
tRNA-synt_2	PF00152.20	gi|336253873|ref|YP_004596980.1|	-	4.8e-85	285.4	0.0	5.7e-85	285.1	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|336253873|ref|YP_004596980.1|	-	5.4e-15	55.1	0.3	1e-14	54.3	0.3	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|336253873|ref|YP_004596980.1|	-	0.0011	18.6	0.1	0.2	11.1	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
BOF	PF04076.13	gi|336253873|ref|YP_004596980.1|	-	0.15	12.2	0.4	0.73	9.9	0.1	2.3	3	0	0	3	3	3	0	Bacterial	OB	fold	(BOF)	protein
Na_H_Exchanger	PF00999.21	gi|336253874|ref|YP_004596981.1|	-	2.6e-38	131.8	26.5	3.3e-38	131.5	26.5	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Acatn	PF13000.7	gi|336253874|ref|YP_004596981.1|	-	0.048	12.2	0.1	0.064	11.7	0.1	1.1	1	0	0	1	1	1	0	Acetyl-coenzyme	A	transporter	1
Usp	PF00582.26	gi|336253875|ref|YP_004596982.1|	-	2e-38	132.1	0.2	2.3e-38	131.9	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|336253875|ref|YP_004596982.1|	-	0.0045	17.0	0.0	0.007	16.4	0.0	1.2	1	0	0	1	1	1	1	DNA	photolyase
GHMP_kinases_N	PF00288.26	gi|336253877|ref|YP_004596984.1|	-	1.9e-11	44.0	2.3	1.1e-10	41.5	1.6	2.2	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
DUF1508	PF07411.12	gi|336253878|ref|YP_004596985.1|	-	7.9e-71	233.7	7.2	2e-10	40.4	0.0	13.4	13	0	0	13	13	13	12	Domain	of	unknown	function	(DUF1508)
FtsQ	PF03799.15	gi|336253878|ref|YP_004596985.1|	-	0.00081	20.2	4.8	3.6	8.4	0.1	5.3	3	2	1	4	4	4	1	Cell	division	protein	FtsQ
Nucleoporin2	PF04096.14	gi|336253878|ref|YP_004596985.1|	-	0.0012	19.0	0.2	13	5.9	0.0	4.2	5	0	0	5	5	4	1	Nucleoporin	autopeptidase
DDE_Tnp_IS240	PF13610.6	gi|336253878|ref|YP_004596985.1|	-	0.0017	18.6	6.6	38	4.5	0.0	6.9	6	1	2	8	8	8	0	DDE	domain
PPC	PF04151.15	gi|336253878|ref|YP_004596985.1|	-	0.048	14.8	0.1	0.33	12.1	0.0	2.5	2	0	0	2	2	1	0	Bacterial	pre-peptidase	C-terminal	domain
LtrA	PF06772.11	gi|336253878|ref|YP_004596985.1|	-	0.087	12.0	2.1	0.13	11.4	2.1	1.2	1	0	0	1	1	1	0	Bacterial	low	temperature	requirement	A	protein	(LtrA)
TolB_like	PF15869.5	gi|336253878|ref|YP_004596985.1|	-	0.25	10.5	0.0	0.46	9.7	0.0	1.3	1	0	0	1	1	1	0	TolB-like	6-blade	propeller-like
DUF2914	PF11141.8	gi|336253878|ref|YP_004596985.1|	-	0.34	10.7	0.0	0.34	10.7	0.0	4.2	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF2914)
DUF2188	PF09954.9	gi|336253878|ref|YP_004596985.1|	-	0.45	10.7	0.0	0.45	10.7	0.0	6.9	6	1	1	7	7	7	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
DMRT-like	PF15791.5	gi|336253878|ref|YP_004596985.1|	-	0.55	10.7	2.5	1.9	9.0	0.3	2.3	2	0	0	2	2	2	0	Doublesex-and	mab-3-related	transcription	factor	C1	and	C2
SPOR	PF05036.13	gi|336253878|ref|YP_004596985.1|	-	1.4	9.3	10.2	38	4.7	0.0	5.7	7	0	0	7	7	6	0	Sporulation	related	domain
DUF615	PF04751.14	gi|336253878|ref|YP_004596985.1|	-	6.6	6.7	6.8	11	6.0	0.1	3.8	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF615)
PPS_PS	PF02006.16	gi|336253879|ref|YP_004596986.1|	-	6.4e-77	257.1	2.5	8.1e-77	256.7	2.5	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
RTT107_BRCT_6	PF16771.5	gi|336253879|ref|YP_004596986.1|	-	0.077	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Regulator	of	Ty1	transposition	protein	107	BRCT	domain
SBF	PF01758.16	gi|336253880|ref|YP_004596987.1|	-	1.2e-34	119.7	6.5	2.3e-34	118.8	6.5	1.4	1	0	0	1	1	1	1	Sodium	Bile	acid	symporter	family
Gly-zipper_YMGG	PF13441.6	gi|336253882|ref|YP_004596989.1|	-	4.8e-05	23.0	21.2	5.7e-05	22.8	21.2	1.1	1	0	0	1	1	1	1	YMGG-like	Gly-zipper
Gly-zipper_Omp	PF13488.6	gi|336253882|ref|YP_004596989.1|	-	0.00031	20.7	18.8	0.00039	20.4	18.8	1.2	1	0	0	1	1	1	1	Glycine	zipper
DUF1269	PF06897.12	gi|336253882|ref|YP_004596989.1|	-	0.048	13.9	8.2	0.055	13.8	8.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1269)
Gly-zipper_OmpA	PF13436.6	gi|336253882|ref|YP_004596989.1|	-	0.093	12.5	27.9	0.45	10.3	27.9	1.8	1	1	0	1	1	1	0	Glycine-zipper	domain
TraT	PF05818.12	gi|336253882|ref|YP_004596989.1|	-	3.7	7.2	7.2	4.3	7.0	7.2	1.0	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
Romo1	PF10247.9	gi|336253882|ref|YP_004596989.1|	-	8.2	6.9	14.9	3.4	8.1	5.0	2.1	1	1	1	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
tRNA-synt_1b	PF00579.25	gi|336253883|ref|YP_004596990.1|	-	4.4e-47	160.8	0.0	5.6e-47	160.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
DUF2156	PF09924.9	gi|336253883|ref|YP_004596990.1|	-	0.077	12.0	0.3	0.15	11.1	0.2	1.5	1	1	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2156)
tRNA-synt_1f	PF01921.18	gi|336253883|ref|YP_004596990.1|	-	0.12	11.3	0.0	13	4.6	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
PHD	PF00628.29	gi|336253884|ref|YP_004596991.1|	-	0.00017	21.4	8.3	0.0014	18.5	8.3	1.9	1	1	0	1	1	1	1	PHD-finger
C1_1	PF00130.22	gi|336253884|ref|YP_004596991.1|	-	0.00087	19.1	6.5	0.0011	18.9	3.9	1.9	1	1	1	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DZR	PF12773.7	gi|336253884|ref|YP_004596991.1|	-	0.0041	17.1	8.1	0.0083	16.1	8.1	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF35_N	PF12172.8	gi|336253884|ref|YP_004596991.1|	-	0.007	16.2	4.3	1.1	9.2	0.1	3.1	3	0	0	3	3	3	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Prok-RING_1	PF14446.6	gi|336253884|ref|YP_004596991.1|	-	0.0076	16.2	8.3	0.023	14.6	8.3	1.7	1	1	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.6	gi|336253884|ref|YP_004596991.1|	-	0.013	15.1	2.8	0.013	15.1	2.8	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|336253884|ref|YP_004596991.1|	-	0.017	15.2	1.4	0.017	15.2	1.4	1.9	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-RING_9	PF13901.6	gi|336253884|ref|YP_004596991.1|	-	0.018	15.0	6.3	0.021	14.8	6.3	1.1	1	0	0	1	1	1	0	Putative	zinc-RING	and/or	ribbon
YhfH	PF14149.6	gi|336253884|ref|YP_004596991.1|	-	0.028	14.4	14.8	0.26	11.3	6.1	2.8	1	1	2	3	3	3	0	YhfH-like	protein
zinc_ribbon_15	PF17032.5	gi|336253884|ref|YP_004596991.1|	-	0.029	15.1	6.5	0.039	14.7	1.8	2.0	2	0	0	2	2	2	0	zinc-ribbon	family
zf_UBZ	PF18439.1	gi|336253884|ref|YP_004596991.1|	-	0.043	13.4	9.1	0.21	11.2	0.2	3.1	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
C1_2	PF03107.16	gi|336253884|ref|YP_004596991.1|	-	0.062	13.6	2.2	0.062	13.6	2.2	2.0	1	1	1	2	2	2	0	C1	domain
Ribosomal_L37e	PF01907.19	gi|336253884|ref|YP_004596991.1|	-	0.07	13.3	7.8	1.9	8.7	0.9	2.2	1	1	1	2	2	2	0	Ribosomal	protein	L37e
RNA_POL_M_15KD	PF02150.16	gi|336253884|ref|YP_004596991.1|	-	0.19	11.6	8.0	0.64	10.0	4.3	2.5	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|336253884|ref|YP_004596991.1|	-	0.29	11.1	9.5	0.99	9.4	2.6	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|336253884|ref|YP_004596991.1|	-	0.31	11.1	10.1	9.9	6.2	10.1	2.0	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
NinF	PF05810.12	gi|336253884|ref|YP_004596991.1|	-	0.47	10.4	5.9	0.099	12.5	2.8	1.5	1	1	0	1	1	1	0	NinF	protein
Cript	PF10235.9	gi|336253884|ref|YP_004596991.1|	-	0.55	10.8	6.5	2.1	9.0	6.5	1.9	1	1	0	1	1	1	0	Microtubule-associated	protein	CRIPT
zf-dskA_traR	PF01258.17	gi|336253884|ref|YP_004596991.1|	-	1.4	8.9	18.3	0.51	10.3	1.2	3.1	2	1	1	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Ribosomal_S27e	PF01667.17	gi|336253884|ref|YP_004596991.1|	-	1.8	8.4	8.5	19	5.1	0.2	2.9	1	1	1	2	2	2	0	Ribosomal	protein	S27
Chordopox_RPO7	PF05864.12	gi|336253884|ref|YP_004596991.1|	-	2	8.7	5.2	9.8	6.5	0.1	2.4	1	1	1	2	2	2	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
ADD_ATRX	PF17981.1	gi|336253884|ref|YP_004596991.1|	-	2.7	7.9	8.2	3.7	7.5	0.1	2.9	1	1	2	3	3	3	0	Cysteine	Rich	ADD	domain
DUF2688	PF10892.8	gi|336253884|ref|YP_004596991.1|	-	5.4	6.6	15.4	3.2	7.3	1.5	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2688)
zf-CCHC	PF00098.23	gi|336253884|ref|YP_004596991.1|	-	5.5	7.2	11.2	13	6.1	0.2	3.3	3	0	0	3	3	3	0	Zinc	knuckle
Zn-ribbon_8	PF09723.10	gi|336253884|ref|YP_004596991.1|	-	5.8	7.1	13.1	1.7	8.9	3.7	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF305	PF03713.13	gi|336253885|ref|YP_004596992.1|	-	1.7e-30	106.1	0.0	2.4e-30	105.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF305)
DUF4142	PF13628.6	gi|336253885|ref|YP_004596992.1|	-	1.8e-10	41.2	0.0	5.3e-10	39.7	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4142)
BPL_LplA_LipB	PF03099.19	gi|336253886|ref|YP_004596993.1|	-	2.1e-15	56.8	0.0	3.1e-15	56.2	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_11	PF08279.12	gi|336253886|ref|YP_004596993.1|	-	8.7e-13	48.0	0.0	1.6e-12	47.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
BPL_C	PF02237.17	gi|336253886|ref|YP_004596993.1|	-	1.4e-12	47.3	0.3	2.5e-12	46.5	0.3	1.5	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
HTH_20	PF12840.7	gi|336253886|ref|YP_004596993.1|	-	1.8e-07	31.1	0.1	3.4e-06	27.0	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336253886|ref|YP_004596993.1|	-	1.7e-06	27.4	0.0	3.4e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336253886|ref|YP_004596993.1|	-	1.3e-05	24.9	0.0	2.2e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336253886|ref|YP_004596993.1|	-	0.00037	20.3	0.1	0.0013	18.6	0.0	2.0	2	0	0	2	2	2	1	MarR	family
Rrf2	PF02082.20	gi|336253886|ref|YP_004596993.1|	-	0.007	16.7	0.0	0.012	15.9	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_AsnC-type	PF13404.6	gi|336253886|ref|YP_004596993.1|	-	0.014	15.2	0.1	0.06	13.2	0.1	2.2	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336253886|ref|YP_004596993.1|	-	0.079	13.2	0.0	0.36	11.0	0.0	2.0	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
NYN	PF01936.18	gi|336253887|ref|YP_004596994.1|	-	0.013	16.0	0.2	0.23	11.9	0.1	2.0	1	1	1	2	2	2	0	NYN	domain
HTH_20	PF12840.7	gi|336253887|ref|YP_004596994.1|	-	0.075	13.1	0.1	1.2	9.3	0.1	2.2	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF2587	PF10759.9	gi|336253887|ref|YP_004596994.1|	-	0.1	12.1	0.1	0.15	11.6	0.1	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2587)
DUF2551	PF10826.8	gi|336253887|ref|YP_004596994.1|	-	0.13	12.5	0.8	0.21	11.9	0.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
HTH_10	PF04967.12	gi|336253888|ref|YP_004596995.1|	-	2.4e-15	56.1	0.0	5e-15	55.0	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253888|ref|YP_004596995.1|	-	4.1e-13	49.5	1.9	6e-13	48.9	1.9	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336253888|ref|YP_004596995.1|	-	0.00016	21.1	0.1	0.00068	19.1	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336253888|ref|YP_004596995.1|	-	0.017	15.0	0.2	0.045	13.6	0.1	1.8	2	0	0	2	2	2	0	MarR	family
HTH_AsnC-type	PF13404.6	gi|336253888|ref|YP_004596995.1|	-	0.02	14.7	0.1	0.042	13.7	0.1	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336253888|ref|YP_004596995.1|	-	0.026	14.2	0.0	0.4	10.4	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
SnoaL_2	PF12680.7	gi|336253888|ref|YP_004596995.1|	-	0.068	13.8	2.4	2.1	9.0	1.1	2.3	1	1	1	2	2	2	0	SnoaL-like	domain
HTH_24	PF13412.6	gi|336253888|ref|YP_004596995.1|	-	0.085	12.4	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Usp	PF00582.26	gi|336253889|ref|YP_004596996.1|	-	5.8e-38	130.6	0.3	6.8e-38	130.3	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Nuc_deoxyrib_tr	PF05014.15	gi|336253890|ref|YP_004596997.1|	-	5.6e-15	55.5	0.0	6.1e-15	55.4	0.0	1.1	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
Glyco_trans_1_4	PF13692.6	gi|336253890|ref|YP_004596997.1|	-	0.0037	17.7	0.0	0.0046	17.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
HD	PF01966.22	gi|336253891|ref|YP_004596998.1|	-	5.2e-11	42.8	2.8	9.9e-11	41.9	2.8	1.4	1	0	0	1	1	1	1	HD	domain
Amidohydro_1	PF01979.20	gi|336253892|ref|YP_004596999.1|	-	6.5e-27	94.7	0.0	1.8e-24	86.8	0.0	2.2	1	1	0	1	1	1	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|336253892|ref|YP_004596999.1|	-	7.8e-06	25.4	0.0	1.1e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.11	gi|336253892|ref|YP_004596999.1|	-	1.9e-05	24.3	2.9	0.00069	19.2	0.5	2.6	1	1	2	3	3	3	2	Amidohydrolase	family
MFS_1	PF07690.16	gi|336253893|ref|YP_004597000.1|	-	1.3e-26	93.3	40.8	1.3e-26	93.3	40.8	1.6	1	1	0	2	2	2	1	Major	Facilitator	Superfamily
MFS_2	PF13347.6	gi|336253893|ref|YP_004597000.1|	-	4.1e-05	22.3	16.2	0.00014	20.5	2.7	2.2	1	1	1	2	2	2	2	MFS/sugar	transport	protein
OATP	PF03137.20	gi|336253893|ref|YP_004597000.1|	-	0.032	12.5	1.5	1.8	6.7	0.5	2.4	2	0	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
COX1	PF00115.20	gi|336253894|ref|YP_004597001.1|	-	3.6e-124	414.9	70.9	3.6e-124	414.9	70.9	2.9	2	1	1	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.18	gi|336253894|ref|YP_004597001.1|	-	6.3e-18	65.5	18.2	6.3e-18	65.5	18.2	2.9	3	0	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
Aminotran_1_2	PF00155.21	gi|336253895|ref|YP_004597002.1|	-	7.6e-66	222.7	0.0	9.4e-66	222.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
FTR	PF01913.18	gi|336253895|ref|YP_004597002.1|	-	0.0016	18.4	0.1	0.004	17.1	0.1	1.7	1	0	0	1	1	1	1	Formylmethanofuran-tetrahydromethanopterin	formyltransferase
Alliinase_C	PF04864.13	gi|336253895|ref|YP_004597002.1|	-	0.0092	14.9	0.0	0.031	13.2	0.0	1.7	1	1	0	1	1	1	1	Allinase
Cys_Met_Meta_PP	PF01053.20	gi|336253895|ref|YP_004597002.1|	-	0.017	13.7	0.0	0.03	12.8	0.0	1.3	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
HTH_38	PF13936.6	gi|336253895|ref|YP_004597002.1|	-	0.18	11.6	0.0	0.37	10.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA_18	PF13238.6	gi|336253896|ref|YP_004597003.1|	-	9.8e-25	87.6	0.3	1.4e-24	87.1	0.3	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|336253896|ref|YP_004597003.1|	-	0.00022	21.5	5.3	0.0016	18.7	5.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|336253896|ref|YP_004597003.1|	-	0.00039	20.6	1.2	0.33	11.1	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|336253896|ref|YP_004597003.1|	-	0.00097	19.4	0.0	0.0025	18.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|336253896|ref|YP_004597003.1|	-	0.0011	19.4	2.1	1.5	9.2	0.4	2.6	1	1	2	3	3	3	2	AAA	domain
NTPase_1	PF03266.15	gi|336253896|ref|YP_004597003.1|	-	0.0071	16.3	0.0	0.016	15.1	0.0	1.6	1	0	0	1	1	1	1	NTPase
AAA_16	PF13191.6	gi|336253896|ref|YP_004597003.1|	-	0.014	15.8	4.9	0.039	14.3	4.9	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|336253896|ref|YP_004597003.1|	-	0.015	14.3	0.0	0.034	13.1	0.0	1.6	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
KTI12	PF08433.10	gi|336253896|ref|YP_004597003.1|	-	0.018	14.5	0.0	0.023	14.1	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_5	PF07728.14	gi|336253896|ref|YP_004597003.1|	-	0.022	14.7	0.0	0.069	13.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|336253896|ref|YP_004597003.1|	-	0.024	14.4	0.0	0.054	13.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|336253896|ref|YP_004597003.1|	-	0.047	13.4	0.7	0.41	10.3	0.1	2.1	2	0	0	2	2	2	0	Thymidylate	kinase
APS_kinase	PF01583.20	gi|336253896|ref|YP_004597003.1|	-	0.061	13.2	0.0	0.095	12.6	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_24	PF13479.6	gi|336253896|ref|YP_004597003.1|	-	0.065	13.0	0.1	0.12	12.1	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|336253896|ref|YP_004597003.1|	-	0.065	13.6	0.0	0.14	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
dNK	PF01712.19	gi|336253896|ref|YP_004597003.1|	-	0.071	12.9	0.1	4.8	7.0	0.1	2.1	1	1	1	2	2	2	0	Deoxynucleoside	kinase
DUF87	PF01935.17	gi|336253896|ref|YP_004597003.1|	-	0.084	13.0	0.0	0.31	11.1	0.0	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
Zeta_toxin	PF06414.12	gi|336253896|ref|YP_004597003.1|	-	0.11	11.8	0.1	0.58	9.4	0.0	2.0	2	1	0	2	2	2	0	Zeta	toxin
CoaE	PF01121.20	gi|336253896|ref|YP_004597003.1|	-	0.16	11.7	1.4	3.2	7.4	0.1	2.4	1	1	1	3	3	3	0	Dephospho-CoA	kinase
ABC_tran	PF00005.27	gi|336253896|ref|YP_004597003.1|	-	0.16	12.5	0.1	0.4	11.2	0.1	2.0	1	1	0	1	1	1	0	ABC	transporter
AAA	PF00004.29	gi|336253896|ref|YP_004597003.1|	-	0.2	12.1	0.9	0.28	11.6	0.2	1.8	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDP-OH_P_transf	PF01066.21	gi|336253897|ref|YP_004597004.1|	-	3.4e-10	40.5	7.5	5.8e-10	39.8	0.7	2.8	3	0	0	3	3	3	2	CDP-alcohol	phosphatidyltransferase
QCR10	PF09796.9	gi|336253897|ref|YP_004597004.1|	-	1.3	9.1	4.6	0.81	9.8	0.8	2.5	2	0	0	2	2	2	0	Ubiquinol-cytochrome-c	reductase	complex	subunit	(QCR10)
HTH_3	PF01381.22	gi|336253898|ref|YP_004597005.1|	-	2.1e-10	40.5	0.3	2.9e-10	40.1	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|336253898|ref|YP_004597005.1|	-	7.9e-09	35.4	0.5	1.3e-08	34.8	0.5	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|336253898|ref|YP_004597005.1|	-	6.2e-08	32.9	0.3	1e-07	32.2	0.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|336253898|ref|YP_004597005.1|	-	3.5e-05	23.6	0.4	5.6e-05	22.9	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
PI3K_1B_p101	PF10486.9	gi|336253898|ref|YP_004597005.1|	-	0.0026	15.6	11.2	0.89	7.2	11.5	2.0	2	0	0	2	2	2	2	Phosphoinositide	3-kinase	gamma	adapter	protein	p101	subunit
HTH_37	PF13744.6	gi|336253898|ref|YP_004597005.1|	-	0.055	13.4	0.0	0.085	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
NOA36	PF06524.12	gi|336253898|ref|YP_004597005.1|	-	0.2	11.0	4.8	0.23	10.7	4.8	1.1	1	0	0	1	1	1	0	NOA36	protein
Macoilin	PF09726.9	gi|336253898|ref|YP_004597005.1|	-	0.92	8.0	8.7	0.97	7.9	8.7	1.1	1	0	0	1	1	1	0	Macoilin	family
Period_C	PF12114.8	gi|336253898|ref|YP_004597005.1|	-	5	6.7	28.4	1.6	8.3	20.5	2.1	2	0	0	2	2	2	0	Period	protein	2/3C-terminal	region
Apt1	PF10351.9	gi|336253898|ref|YP_004597005.1|	-	6.1	5.6	12.3	7.1	5.4	12.3	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
TIM	PF00121.18	gi|336253899|ref|YP_004597006.1|	-	1.1e-08	34.8	0.0	2.6e-08	33.6	0.0	1.6	1	1	1	2	2	2	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|336253899|ref|YP_004597006.1|	-	5.1e-05	22.7	1.9	5.1e-05	22.7	1.9	1.7	1	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|336253899|ref|YP_004597006.1|	-	0.0016	17.6	3.7	0.0016	17.6	3.7	1.8	2	1	0	2	2	2	1	FMN-dependent	dehydrogenase
IGPS	PF00218.21	gi|336253899|ref|YP_004597006.1|	-	0.0034	16.6	0.0	0.0089	15.2	0.0	1.7	1	1	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
Hydrolase_like	PF13242.6	gi|336253899|ref|YP_004597006.1|	-	0.063	13.4	2.8	0.11	12.6	0.4	2.4	2	0	0	2	2	2	0	HAD-hyrolase-like
Glu_synthase	PF01645.17	gi|336253899|ref|YP_004597006.1|	-	0.078	12.1	2.2	0.12	11.5	0.5	1.8	1	1	1	2	2	2	0	Conserved	region	in	glutamate	synthase
NMO	PF03060.15	gi|336253899|ref|YP_004597006.1|	-	0.15	11.4	10.2	0.066	12.6	7.3	1.6	1	1	1	2	2	2	0	Nitronate	monooxygenase
Repressor_Mnt	PF11423.8	gi|336253900|ref|YP_004597007.1|	-	0.073	12.9	1.3	0.28	11.0	0.3	2.2	2	0	0	2	2	2	0	Regulatory	protein	Mnt
TIR_2	PF13676.6	gi|336253901|ref|YP_004597008.1|	-	5.2e-08	33.5	0.0	7.4e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	TIR	domain
Nuc_deoxyrib_tr	PF05014.15	gi|336253901|ref|YP_004597008.1|	-	2.1e-05	24.5	0.0	3e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
DUF1863	PF08937.11	gi|336253901|ref|YP_004597008.1|	-	0.0013	19.1	0.0	0.0019	18.5	0.0	1.2	1	0	0	1	1	1	1	MTH538	TIR-like	domain	(DUF1863)
TIR	PF01582.20	gi|336253901|ref|YP_004597008.1|	-	0.11	12.3	0.0	0.18	11.6	0.0	1.2	1	0	0	1	1	1	0	TIR	domain
DUF4062	PF13271.6	gi|336253901|ref|YP_004597008.1|	-	0.18	12.2	0.0	0.31	11.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4062)
DnaJ	PF00226.31	gi|336253902|ref|YP_004597009.1|	-	6.3e-11	42.2	0.0	1.2e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
Arc_trans_TRASH	PF08394.10	gi|336253902|ref|YP_004597009.1|	-	0.02	15.2	0.1	0.02	15.2	0.1	3.2	4	0	0	4	4	4	0	Archaeal	TRASH	domain
ATPase-cat_bd	PF12156.8	gi|336253902|ref|YP_004597009.1|	-	0.037	14.8	1.5	0.037	14.8	1.5	3.5	2	1	2	4	4	4	0	Putative	metal-binding	domain	of	cation	transport	ATPase
C1_1	PF00130.22	gi|336253902|ref|YP_004597009.1|	-	0.16	11.9	9.4	0.63	10.0	0.0	3.3	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
GPR15L	PF15854.5	gi|336253902|ref|YP_004597009.1|	-	0.59	10.4	0.0	0.59	10.4	0.0	2.3	2	1	0	2	2	2	0	G-protein	coupled	receptor	ligand	15
DUF3054	PF11255.8	gi|336253903|ref|YP_004597010.1|	-	6.1e-24	84.6	10.3	7.5e-24	84.4	10.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
DUF3185	PF11381.8	gi|336253903|ref|YP_004597010.1|	-	0.088	12.8	0.6	0.088	12.8	0.6	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
PetG	PF02529.15	gi|336253904|ref|YP_004597011.1|	-	0.07	13.0	5.5	0.38	10.6	5.5	2.1	1	1	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
OCD_Mu_crystall	PF02423.15	gi|336253905|ref|YP_004597012.1|	-	1.8e-66	224.3	0.2	2.1e-66	224.0	0.2	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
F420_oxidored	PF03807.17	gi|336253905|ref|YP_004597012.1|	-	3.4e-05	24.3	0.0	8.3e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|336253905|ref|YP_004597012.1|	-	0.00018	21.6	0.0	0.00028	20.9	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.15	gi|336253905|ref|YP_004597012.1|	-	0.0062	16.7	0.0	0.01	16.0	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
HTH_10	PF04967.12	gi|336253906|ref|YP_004597013.1|	-	1.8e-17	62.9	0.0	2.4e-17	62.4	0.0	1.2	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Serglycin	PF04360.12	gi|336253906|ref|YP_004597013.1|	-	0.0011	18.9	0.7	0.0016	18.4	0.7	1.3	1	0	0	1	1	1	1	Serglycin
AF-4	PF05110.13	gi|336253906|ref|YP_004597013.1|	-	0.013	13.7	4.1	0.015	13.5	4.1	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
MarR_2	PF12802.7	gi|336253906|ref|YP_004597013.1|	-	0.014	15.3	0.1	0.03	14.2	0.1	1.6	1	0	0	1	1	1	0	MarR	family
HTH_1	PF00126.27	gi|336253906|ref|YP_004597013.1|	-	0.049	13.6	0.4	0.11	12.5	0.4	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4	PF04545.16	gi|336253906|ref|YP_004597013.1|	-	0.05	13.1	0.2	0.11	12.1	0.2	1.6	1	1	0	1	1	1	0	Sigma-70,	region	4
P22_Cro	PF14549.6	gi|336253906|ref|YP_004597013.1|	-	0.11	12.3	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
HTH_11	PF08279.12	gi|336253906|ref|YP_004597013.1|	-	0.14	12.1	0.2	0.24	11.4	0.2	1.3	1	0	0	1	1	1	0	HTH	domain
Cu-oxidase_3	PF07732.15	gi|336253907|ref|YP_004597014.1|	-	2.5e-08	33.9	0.0	5.6e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|336253907|ref|YP_004597014.1|	-	1.1e-06	28.4	0.0	7.7e-06	25.7	0.0	2.4	2	1	0	2	2	2	1	Multicopper	oxidase
TAT_signal	PF10518.9	gi|336253907|ref|YP_004597014.1|	-	0.005	16.6	5.3	0.018	14.9	5.3	2.0	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336253907|ref|YP_004597014.1|	-	0.13	11.6	0.8	0.28	10.5	0.8	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DHHA1	PF02272.19	gi|336253908|ref|YP_004597015.1|	-	2.4e-12	47.5	0.1	4.2e-12	46.7	0.1	1.3	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|336253908|ref|YP_004597015.1|	-	1.4e-10	41.3	0.1	2.3e-10	40.6	0.1	1.3	1	0	0	1	1	1	1	DHH	family
HSP20	PF00011.21	gi|336253909|ref|YP_004597016.1|	-	4.1e-24	84.7	0.1	5.5e-24	84.3	0.1	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|336253909|ref|YP_004597016.1|	-	1.9e-12	46.5	0.0	3e-12	45.9	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
CS	PF04969.16	gi|336253909|ref|YP_004597016.1|	-	0.00057	20.9	0.0	0.0008	20.4	0.0	1.3	1	0	0	1	1	1	1	CS	domain
GvpH	PF05455.11	gi|336253909|ref|YP_004597016.1|	-	0.016	15.3	1.4	5	7.1	0.0	2.8	2	1	1	3	3	3	0	GvpH
DUF2807	PF10988.8	gi|336253909|ref|YP_004597016.1|	-	0.041	13.7	0.2	2.1	8.1	0.0	2.1	1	1	1	2	2	2	0	Putative	auto-transporter	adhesin,	head	GIN	domain
FKBP26_C	PF18046.1	gi|336253909|ref|YP_004597016.1|	-	0.16	12.1	0.0	25	5.1	0.0	2.2	2	0	0	2	2	2	0	FKBP26_C-terminal
DJ-1_PfpI	PF01965.24	gi|336253910|ref|YP_004597017.1|	-	5.5e-14	52.3	0.3	3e-12	46.6	0.3	2.1	1	1	0	1	1	1	1	DJ-1/PfpI	family
ThiJ_like	PF17124.5	gi|336253910|ref|YP_004597017.1|	-	5.3e-09	36.0	0.0	1e-08	35.1	0.0	1.5	1	1	0	1	1	1	1	ThiJ/PfpI	family-like
ThuA	PF06283.11	gi|336253910|ref|YP_004597017.1|	-	0.027	14.7	0.0	0.028	14.7	0.0	1.2	1	0	0	1	1	1	0	Trehalose	utilisation
TFIIB	PF00382.19	gi|336253911|ref|YP_004597018.1|	-	2.7e-05	24.1	0.2	7.2e-05	22.8	0.2	1.6	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
Sigma70_r4	PF04545.16	gi|336253911|ref|YP_004597018.1|	-	0.054	13.0	0.0	9.1	5.9	0.0	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
SPW	PF03779.14	gi|336253913|ref|YP_004597020.1|	-	0.0011	18.5	11.9	0.2	11.2	5.9	2.6	2	2	0	2	2	2	2	SPW	repeat
QueT	PF06177.11	gi|336253913|ref|YP_004597020.1|	-	0.097	13.1	3.1	0.12	12.7	3.1	1.1	1	0	0	1	1	1	0	QueT	transporter
DUF2892	PF11127.8	gi|336253913|ref|YP_004597020.1|	-	4.4	7.4	8.5	2.1	8.4	3.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Usp	PF00582.26	gi|336253914|ref|YP_004597021.1|	-	5.6e-10	39.9	0.5	6.6e-10	39.6	0.5	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.21	gi|336253914|ref|YP_004597021.1|	-	0.0071	16.3	0.0	1.3	8.9	0.0	2.2	2	0	0	2	2	2	2	Electron	transfer	flavoprotein	domain
Na_H_Exchanger	PF00999.21	gi|336253915|ref|YP_004597022.1|	-	3.5e-50	170.9	49.9	4.5e-50	170.5	49.9	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Usp	PF00582.26	gi|336253915|ref|YP_004597022.1|	-	1e-06	29.3	0.9	2e-06	28.4	0.2	1.8	2	0	0	2	2	2	1	Universal	stress	protein	family
AMP-binding	PF00501.28	gi|336253916|ref|YP_004597023.1|	-	1.1e-92	310.8	0.0	1.4e-92	310.5	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336253916|ref|YP_004597023.1|	-	4.1e-19	69.3	0.1	8e-19	68.4	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|336253916|ref|YP_004597023.1|	-	4.2e-14	52.2	2.3	9.8e-14	51.0	2.3	1.7	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
BAT	PF15915.5	gi|336253917|ref|YP_004597024.1|	-	1.1e-45	155.3	7.8	1.1e-45	155.3	7.8	2.9	3	0	0	3	3	3	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336253917|ref|YP_004597024.1|	-	1.4e-19	69.6	0.0	3.7e-19	68.3	0.0	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_9	PF13426.7	gi|336253917|ref|YP_004597024.1|	-	1.1e-12	48.1	0.0	2.7e-12	46.9	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
Phage_integrase	PF00589.22	gi|336253917|ref|YP_004597024.1|	-	2e-11	44.0	0.0	5.6e-11	42.5	0.0	1.7	2	0	0	2	2	2	1	Phage	integrase	family
PAS_4	PF08448.10	gi|336253917|ref|YP_004597024.1|	-	5.6e-10	39.4	1.5	2.6e-09	37.3	0.5	2.8	2	0	0	2	2	1	1	PAS	fold
PAS	PF00989.25	gi|336253917|ref|YP_004597024.1|	-	7.7e-10	38.8	0.0	4e-09	36.5	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
GAF_2	PF13185.6	gi|336253917|ref|YP_004597024.1|	-	4.3e-08	33.5	2.4	1.7e-06	28.4	0.3	3.2	2	1	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|336253917|ref|YP_004597024.1|	-	1.6e-07	31.7	0.0	2.8e-06	27.7	0.0	2.4	2	0	0	2	2	2	1	GAF	domain
PAS_10	PF13596.6	gi|336253917|ref|YP_004597024.1|	-	0.0017	18.9	0.0	0.004	17.7	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|336253917|ref|YP_004597024.1|	-	0.0035	17.6	0.1	0.0095	16.2	0.1	1.8	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.26	gi|336253917|ref|YP_004597024.1|	-	0.0064	17.1	0.0	0.021	15.5	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
HTH_20	PF12840.7	gi|336253917|ref|YP_004597024.1|	-	0.0087	16.1	0.3	0.05	13.7	0.1	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
PAS_8	PF13188.7	gi|336253917|ref|YP_004597024.1|	-	0.0097	15.9	0.0	0.043	13.9	0.0	2.2	1	0	0	1	1	1	1	PAS	domain
Sigma70_r4	PF04545.16	gi|336253917|ref|YP_004597024.1|	-	0.018	14.5	0.0	0.05	13.1	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|336253917|ref|YP_004597024.1|	-	0.021	14.5	0.0	0.065	12.9	0.0	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
Cep57_CLD_2	PF14197.6	gi|336253917|ref|YP_004597024.1|	-	0.049	13.7	0.8	0.13	12.4	0.8	1.6	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
GntR	PF00392.21	gi|336253917|ref|YP_004597024.1|	-	0.07	12.8	0.4	12	5.7	0.0	3.1	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
Ribosomal_L13e	PF01294.18	gi|336253917|ref|YP_004597024.1|	-	0.074	12.9	0.1	0.15	11.9	0.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L13e
HTH_5	PF01022.20	gi|336253917|ref|YP_004597024.1|	-	0.085	12.7	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|336253917|ref|YP_004597024.1|	-	0.27	11.1	2.5	2	8.3	0.0	3.5	3	0	0	3	3	2	0	Homeodomain-like	domain
AMP-binding	PF00501.28	gi|336253918|ref|YP_004597025.1|	-	9.1e-91	304.5	0.1	1.1e-90	304.3	0.1	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336253918|ref|YP_004597025.1|	-	3.8e-22	79.1	2.5	9.3e-22	77.8	2.5	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|336253918|ref|YP_004597025.1|	-	2.1e-14	53.1	2.2	6.4e-14	51.6	2.2	1.9	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
DUF4212	PF13937.6	gi|336253919|ref|YP_004597026.1|	-	8e-22	77.4	0.7	9.9e-22	77.1	0.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4212)
SSF	PF00474.17	gi|336253920|ref|YP_004597027.1|	-	1.2e-51	175.9	31.1	1.8e-51	175.3	31.1	1.3	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Usp	PF00582.26	gi|336253921|ref|YP_004597028.1|	-	7.5e-36	123.7	1.3	8.7e-36	123.5	1.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
MGS	PF02142.22	gi|336253921|ref|YP_004597028.1|	-	0.073	13.3	0.0	0.19	11.9	0.0	1.7	2	0	0	2	2	2	0	MGS-like	domain
CBS	PF00571.28	gi|336253921|ref|YP_004597028.1|	-	0.39	11.2	2.3	11	6.6	0.0	2.6	2	1	1	3	3	3	0	CBS	domain
HalOD1	PF18545.1	gi|336253923|ref|YP_004597030.1|	-	7.3e-22	77.4	0.1	1.1e-21	76.8	0.1	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_10	PF04967.12	gi|336253924|ref|YP_004597031.1|	-	3.5e-15	55.6	0.1	5.3e-15	55.0	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253924|ref|YP_004597031.1|	-	4.8e-09	36.3	0.0	7.6e-09	35.6	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336253924|ref|YP_004597031.1|	-	2.2e-08	33.5	0.1	4.6e-08	32.5	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|336253924|ref|YP_004597031.1|	-	2.5e-05	23.8	0.0	0.00024	20.7	0.0	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336253924|ref|YP_004597031.1|	-	6.9e-05	22.7	1.1	0.00022	21.1	1.1	1.9	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336253924|ref|YP_004597031.1|	-	0.0091	15.5	0.0	0.017	14.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336253924|ref|YP_004597031.1|	-	0.025	14.4	0.1	0.039	13.7	0.1	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.6	gi|336253924|ref|YP_004597031.1|	-	0.036	13.9	0.2	0.071	13.0	0.2	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336253924|ref|YP_004597031.1|	-	0.051	13.6	0.1	0.12	12.4	0.1	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336253924|ref|YP_004597031.1|	-	0.061	13.3	0.0	0.061	13.3	0.0	2.1	3	0	0	3	3	3	0	HTH	domain
DUF2270	PF10028.9	gi|336253926|ref|YP_004597033.1|	-	1e-75	253.4	5.7	1.2e-75	253.2	5.7	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
7TM_GPCR_Str	PF10326.9	gi|336253926|ref|YP_004597033.1|	-	0.12	11.7	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	Serpentine	type	7TM	GPCR	chemoreceptor	Str
DUF485	PF04341.12	gi|336253926|ref|YP_004597033.1|	-	5.5	7.0	6.9	0.74	9.8	0.6	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function,	DUF485
MASE3	PF17159.4	gi|336253926|ref|YP_004597033.1|	-	6.1	6.4	7.9	3.2	7.3	0.7	2.1	2	0	0	2	2	2	0	Membrane-associated	sensor	domain
HalOD1	PF18545.1	gi|336253927|ref|YP_004597034.1|	-	3.9e-22	78.3	0.1	5.4e-22	77.9	0.1	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF2587	PF10759.9	gi|336253928|ref|YP_004597035.1|	-	0.083	12.4	0.1	0.12	11.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2587)
HTH_10	PF04967.12	gi|336253929|ref|YP_004597036.1|	-	8.2e-15	54.3	0.0	1.3e-14	53.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253929|ref|YP_004597036.1|	-	7.5e-13	48.6	3.3	9.6e-13	48.3	3.3	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336253929|ref|YP_004597036.1|	-	1.4e-05	24.5	0.1	2.8e-05	23.5	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|336253929|ref|YP_004597036.1|	-	0.04	13.7	0.1	0.075	12.9	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
ProRS-C_2	PF09181.10	gi|336253930|ref|YP_004597037.1|	-	0.078	13.1	0.1	0.11	12.7	0.1	1.2	1	0	0	1	1	1	0	Prolyl-tRNA	synthetase,	C-terminal
FA_desaturase	PF00487.24	gi|336253931|ref|YP_004597038.1|	-	0.11	12.3	2.2	0.13	12.1	2.2	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
Cupin_2	PF07883.11	gi|336253932|ref|YP_004597039.1|	-	5.9e-17	61.1	0.0	8.8e-17	60.6	0.0	1.3	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|336253932|ref|YP_004597039.1|	-	3.5e-05	23.4	0.0	6.5e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|336253932|ref|YP_004597039.1|	-	0.0083	16.0	0.0	0.012	15.6	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|336253932|ref|YP_004597039.1|	-	0.23	11.1	0.0	0.39	10.3	0.0	1.3	1	1	0	1	1	1	0	Cupin
Trm56	PF01994.16	gi|336253933|ref|YP_004597040.1|	-	4.4e-46	155.7	0.0	6.1e-46	155.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
TAT_signal	PF10518.9	gi|336253934|ref|YP_004597041.1|	-	0.022	14.6	0.7	0.052	13.4	0.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Dyp_perox	PF04261.12	gi|336253935|ref|YP_004597042.1|	-	0.02	13.9	0.0	0.084	11.9	0.0	1.9	1	1	0	1	1	1	0	Dyp-type	peroxidase	family
TAT_signal	PF10518.9	gi|336253935|ref|YP_004597042.1|	-	0.063	13.1	5.6	0.14	12.0	5.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TFIIE_alpha	PF02002.17	gi|336253938|ref|YP_004597045.1|	-	3.3e-19	68.7	0.0	7.3e-19	67.6	0.1	1.6	2	0	0	2	2	2	1	TFIIE	alpha	subunit
Sigma70_r3	PF04539.16	gi|336253938|ref|YP_004597045.1|	-	0.0033	17.5	0.1	0.0074	16.4	0.1	1.7	1	0	0	1	1	1	1	Sigma-70	region	3
Rad50_zn_hook	PF04423.14	gi|336253938|ref|YP_004597045.1|	-	0.0054	16.5	1.0	0.027	14.3	0.1	2.3	2	0	0	2	2	2	1	Rad50	zinc	hook	motif
DNA_ligase_ZBD	PF03119.16	gi|336253938|ref|YP_004597045.1|	-	0.0088	16.0	0.0	0.017	15.1	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|336253938|ref|YP_004597045.1|	-	0.049	13.8	1.8	0.095	12.8	1.8	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|336253938|ref|YP_004597045.1|	-	0.05	13.6	0.3	0.087	12.8	0.3	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf-ribbon_3	PF13248.6	gi|336253938|ref|YP_004597045.1|	-	0.054	12.9	0.1	0.1	12.1	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
HTH_20	PF12840.7	gi|336253938|ref|YP_004597045.1|	-	0.077	13.1	0.5	0.48	10.5	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HypA	PF01155.19	gi|336253938|ref|YP_004597045.1|	-	0.11	12.5	0.1	0.17	12.0	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|336253938|ref|YP_004597045.1|	-	0.12	12.0	0.9	7.5	6.2	0.1	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-Mss51	PF13824.6	gi|336253938|ref|YP_004597045.1|	-	0.22	11.7	2.2	0.76	9.9	1.5	2.3	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TF_Zn_Ribbon	PF08271.12	gi|336253938|ref|YP_004597045.1|	-	0.46	10.0	3.4	2.6	7.6	2.9	2.5	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF2110	PF09883.9	gi|336253939|ref|YP_004597046.1|	-	4e-95	317.6	0.0	4.6e-95	317.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
DUF4307	PF14155.6	gi|336253940|ref|YP_004597047.1|	-	0.002	17.9	0.0	0.57	10.0	0.0	2.9	4	0	0	4	4	4	2	Domain	of	unknown	function	(DUF4307)
CheW	PF01584.19	gi|336253941|ref|YP_004597048.1|	-	4.6e-14	52.2	0.0	5.5e-14	52.0	0.0	1.0	1	0	0	1	1	1	1	CheW-like	domain
Cytomega_US3	PF05963.11	gi|336253941|ref|YP_004597048.1|	-	0.083	12.5	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Cytomegalovirus	US3	protein
CheW	PF01584.19	gi|336253942|ref|YP_004597049.1|	-	1.1e-17	63.9	0.0	1.9e-17	63.2	0.0	1.3	1	0	0	1	1	1	1	CheW-like	domain
Response_reg	PF00072.24	gi|336253943|ref|YP_004597050.1|	-	4.1e-31	107.4	0.1	4.6e-31	107.3	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
B12-binding	PF02310.19	gi|336253943|ref|YP_004597050.1|	-	0.021	14.8	0.0	0.027	14.5	0.0	1.2	1	0	0	1	1	1	0	B12	binding	domain
CheB_methylest	PF01339.17	gi|336253944|ref|YP_004597051.1|	-	6.1e-54	182.3	0.1	1.1e-53	181.5	0.1	1.4	1	0	0	1	1	1	1	CheB	methylesterase
Response_reg	PF00072.24	gi|336253944|ref|YP_004597051.1|	-	2.1e-23	82.6	0.2	4.2e-23	81.7	0.2	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
SRRM_C	PF15230.6	gi|336253944|ref|YP_004597051.1|	-	0.24	12.0	7.3	0.41	11.3	7.3	1.4	1	0	0	1	1	1	0	Serine/arginine	repetitive	matrix	protein	C-terminus
Hpt	PF01627.23	gi|336253945|ref|YP_004597052.1|	-	7e-20	71.1	3.9	2.8e-19	69.2	0.2	3.6	3	0	0	3	3	3	1	Hpt	domain
HATPase_c	PF02518.26	gi|336253945|ref|YP_004597052.1|	-	3.8e-18	66.0	0.1	1.2e-17	64.5	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CheW	PF01584.19	gi|336253945|ref|YP_004597052.1|	-	7.5e-08	32.1	0.6	2.4e-07	30.5	0.6	1.9	1	1	0	1	1	1	1	CheW-like	domain
H-kinase_dim	PF02895.14	gi|336253945|ref|YP_004597052.1|	-	1.7e-07	31.5	5.3	4.8e-07	30.1	5.3	1.9	1	0	0	1	1	1	1	Signal	transducing	histidine	kinase,	homodimeric	domain
P2	PF07194.11	gi|336253945|ref|YP_004597052.1|	-	9.6e-06	25.6	2.1	0.00011	22.2	0.0	3.1	2	0	0	2	2	2	1	P2	response	regulator	binding	domain
HATPase_c_2	PF13581.6	gi|336253945|ref|YP_004597052.1|	-	0.0011	18.9	0.8	0.0011	18.9	0.8	4.1	6	0	0	6	6	6	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336253945|ref|YP_004597052.1|	-	0.004	17.0	0.0	0.015	15.1	0.0	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Serglycin	PF04360.12	gi|336253945|ref|YP_004597052.1|	-	0.19	11.7	3.7	0.63	10.0	3.7	1.9	1	0	0	1	1	1	0	Serglycin
CheC	PF04509.12	gi|336253946|ref|YP_004597053.1|	-	2.3e-13	49.8	0.1	8.9e-13	47.9	0.0	2.0	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.6	gi|336253946|ref|YP_004597053.1|	-	1.4e-06	28.4	0.1	2.7e-06	27.5	0.1	1.5	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
CheC	PF04509.12	gi|336253947|ref|YP_004597054.1|	-	2.7e-19	68.8	0.7	4.9e-13	48.8	0.0	2.5	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|336253947|ref|YP_004597054.1|	-	1.4e-14	54.0	0.9	8.3e-07	29.1	0.2	2.3	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
CheD	PF03975.13	gi|336253948|ref|YP_004597055.1|	-	3.1e-32	110.9	0.0	3.9e-32	110.6	0.0	1.1	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
CheR	PF01739.18	gi|336253949|ref|YP_004597056.1|	-	2e-47	161.2	0.0	2.7e-47	160.8	0.0	1.2	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.15	gi|336253949|ref|YP_004597056.1|	-	7.3e-11	41.6	3.5	1.2e-10	40.9	1.6	2.3	2	0	0	2	2	2	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_12	PF08242.12	gi|336253949|ref|YP_004597056.1|	-	9e-09	36.0	0.1	3.9e-06	27.5	0.1	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336253949|ref|YP_004597056.1|	-	2e-07	31.6	0.1	0.00091	19.9	0.0	3.0	2	2	1	3	3	3	2	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253949|ref|YP_004597056.1|	-	4.8e-06	26.4	0.0	0.00023	21.0	0.0	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336253949|ref|YP_004597056.1|	-	7.4e-06	26.5	0.1	0.0041	17.8	0.1	2.7	1	1	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.11	gi|336253949|ref|YP_004597056.1|	-	0.041	13.5	0.0	0.062	12.9	0.0	1.3	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
TMEM171	PF15471.6	gi|336253951|ref|YP_004597058.1|	-	0.012	14.7	0.0	0.019	14.0	0.0	1.2	1	0	0	1	1	1	0	Transmembrane	protein	family	171
DUF2976	PF11190.8	gi|336253951|ref|YP_004597058.1|	-	0.023	14.5	0.1	0.048	13.5	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2976)
EF-hand_5	PF13202.6	gi|336253952|ref|YP_004597059.1|	-	0.22	11.1	1.2	0.45	10.1	0.1	1.9	2	0	0	2	2	2	0	EF	hand
Nramp	PF01566.18	gi|336253954|ref|YP_004597061.1|	-	0.024	13.6	0.0	0.03	13.3	0.0	1.1	1	0	0	1	1	1	0	Natural	resistance-associated	macrophage	protein
PXT1	PF15214.6	gi|336253954|ref|YP_004597061.1|	-	0.026	14.9	0.1	0.051	13.9	0.1	1.4	1	0	0	1	1	1	0	Peroxisomal	testis-specific	protein	1
DUF1918	PF08940.11	gi|336253954|ref|YP_004597061.1|	-	0.039	13.6	0.0	0.11	12.1	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1918)
DUF1923	PF09083.10	gi|336253955|ref|YP_004597062.1|	-	0.2	11.4	0.0	0.33	10.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1923)
T2SSF	PF00482.23	gi|336253956|ref|YP_004597063.1|	-	9.5e-30	103.1	10.5	2.3e-16	59.9	0.5	3.1	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
MnmE_helical	PF12631.7	gi|336253956|ref|YP_004597063.1|	-	0.087	13.0	0.0	0.2	11.8	0.0	1.6	1	0	0	1	1	1	0	MnmE	helical	domain
Orf78	PF06024.12	gi|336253956|ref|YP_004597063.1|	-	0.3	11.4	1.5	1.9	8.8	0.2	2.5	2	0	0	2	2	2	0	Orf78	(ac78)
PMP1_2	PF08114.11	gi|336253956|ref|YP_004597063.1|	-	0.61	9.9	0.0	0.61	9.9	0.0	3.0	3	0	0	3	3	3	0	ATPase	proteolipid	family
DUF2524	PF10732.9	gi|336253956|ref|YP_004597063.1|	-	0.87	9.9	3.7	0.66	10.3	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2524)
EMP24_GP25L	PF01105.24	gi|336253956|ref|YP_004597063.1|	-	1.6	8.6	3.8	7.7	6.4	0.2	2.3	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
T2SSE	PF00437.20	gi|336253957|ref|YP_004597064.1|	-	8.5e-43	146.4	0.0	1.3e-42	145.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|336253957|ref|YP_004597064.1|	-	0.011	15.5	0.1	0.022	14.5	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
GerPC	PF10737.9	gi|336253957|ref|YP_004597064.1|	-	0.014	15.4	0.5	0.038	14.0	0.5	1.7	1	0	0	1	1	1	0	Spore	germination	protein	GerPC
MttA_Hcf106	PF02416.16	gi|336253958|ref|YP_004597065.1|	-	4.8e-14	51.4	2.4	5.6e-14	51.2	2.4	1.3	1	1	0	1	1	1	1	mttA/Hcf106	family
GP24_25	PF17388.2	gi|336253958|ref|YP_004597065.1|	-	0.098	12.6	0.7	0.12	12.4	0.7	1.2	1	0	0	1	1	1	0	Tail	assembly	gene	products	24	&	25
AhpC-TSA	PF00578.21	gi|336253959|ref|YP_004597066.1|	-	5.2e-31	107.2	0.0	6e-31	106.9	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336253959|ref|YP_004597066.1|	-	2.7e-21	75.8	0.0	3.2e-21	75.6	0.0	1.0	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.12	gi|336253959|ref|YP_004597066.1|	-	0.0012	18.4	0.0	0.0017	18.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
HD	PF01966.22	gi|336253960|ref|YP_004597067.1|	-	1e-08	35.4	3.2	1.8e-08	34.7	3.2	1.4	1	0	0	1	1	1	1	HD	domain
TrmB	PF01978.19	gi|336253961|ref|YP_004597068.1|	-	6.6e-06	25.9	0.1	7.7e-06	25.7	0.1	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336253961|ref|YP_004597068.1|	-	0.004	17.0	0.1	0.0051	16.7	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|336253961|ref|YP_004597068.1|	-	0.0086	15.9	0.2	0.014	15.2	0.2	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|336253961|ref|YP_004597068.1|	-	0.013	15.4	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|336253961|ref|YP_004597068.1|	-	0.022	15.1	0.0	0.028	14.7	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_42	PF06224.12	gi|336253961|ref|YP_004597068.1|	-	0.033	13.8	0.0	0.033	13.7	0.0	1.0	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|336253961|ref|YP_004597068.1|	-	0.12	12.4	0.1	0.36	10.8	0.1	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|336253961|ref|YP_004597068.1|	-	0.14	12.6	0.0	0.16	12.3	0.0	1.1	1	0	0	1	1	1	0	Penicillinase	repressor
DUF1427	PF07235.11	gi|336253962|ref|YP_004597069.1|	-	8e-06	25.7	1.8	9.7e-06	25.5	1.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1427)
DUF5313	PF17240.2	gi|336253963|ref|YP_004597070.1|	-	0.11	13.0	0.7	0.12	12.8	0.7	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5313)
FAD_binding_2	PF00890.24	gi|336253964|ref|YP_004597071.1|	-	1.4e-121	406.5	8.3	2.3e-121	405.8	8.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|336253964|ref|YP_004597071.1|	-	2.8e-37	127.6	0.2	4.6e-37	126.9	0.2	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|336253964|ref|YP_004597071.1|	-	7.5e-09	35.2	5.4	0.0021	17.4	3.0	2.8	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336253964|ref|YP_004597071.1|	-	0.00083	18.2	0.4	0.00083	18.2	0.4	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|336253964|ref|YP_004597071.1|	-	0.0011	18.4	4.1	0.0011	18.4	4.1	2.0	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|336253964|ref|YP_004597071.1|	-	0.0015	17.7	4.4	0.0029	16.8	4.4	1.5	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|336253964|ref|YP_004597071.1|	-	0.0025	17.1	1.1	0.0061	15.9	1.1	1.6	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|336253964|ref|YP_004597071.1|	-	0.0049	16.5	8.7	0.033	13.8	8.0	2.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|336253964|ref|YP_004597071.1|	-	0.0074	15.6	1.9	0.071	12.3	0.4	2.5	2	0	0	2	2	2	1	Thi4	family
Pyr_redox_3	PF13738.6	gi|336253964|ref|YP_004597071.1|	-	0.01	15.1	1.6	0.017	14.4	0.5	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|336253964|ref|YP_004597071.1|	-	0.059	12.7	1.3	0.13	11.5	1.3	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Fer2_3	PF13085.6	gi|336253965|ref|YP_004597072.1|	-	1.2e-33	115.4	0.5	3.6e-33	113.8	0.0	2.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|336253965|ref|YP_004597072.1|	-	4.8e-13	49.4	3.5	1.2e-12	48.0	3.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336253965|ref|YP_004597072.1|	-	4.4e-08	33.1	3.7	1.1e-07	31.8	3.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336253965|ref|YP_004597072.1|	-	1e-06	29.2	1.2	2.8e-06	27.8	0.3	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336253965|ref|YP_004597072.1|	-	3.1e-05	24.4	3.7	7.7e-05	23.2	3.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336253965|ref|YP_004597072.1|	-	0.0011	19.1	6.6	0.0011	19.1	6.6	2.3	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|336253965|ref|YP_004597072.1|	-	0.0092	15.7	7.2	0.58	9.9	0.5	2.7	1	1	1	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.6	gi|336253965|ref|YP_004597072.1|	-	0.023	15.6	11.5	0.063	14.2	7.3	3.0	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|336253965|ref|YP_004597072.1|	-	0.33	11.5	8.7	0.65	10.6	2.4	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336253965|ref|YP_004597072.1|	-	0.83	9.9	9.5	4.1	7.6	0.2	2.7	2	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336253965|ref|YP_004597072.1|	-	0.98	9.3	9.5	3.1	7.8	2.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|336253965|ref|YP_004597072.1|	-	1.8	8.8	7.4	3.1	8.0	2.0	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|336253965|ref|YP_004597072.1|	-	3.6	8.7	11.9	2.1	9.5	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|336253965|ref|YP_004597072.1|	-	5.4	7.8	9.8	22	5.9	0.1	3.8	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.6	gi|336253965|ref|YP_004597072.1|	-	6.3	7.0	10.1	1.2e+02	3.0	10.1	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Sdh_cyt	PF01127.22	gi|336253966|ref|YP_004597073.1|	-	5.2e-10	39.4	6.3	6.5e-10	39.1	6.3	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
DUF4536	PF15055.6	gi|336253966|ref|YP_004597073.1|	-	0.29	11.4	2.7	1	9.7	2.7	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4536)
Sdh_cyt	PF01127.22	gi|336253967|ref|YP_004597074.1|	-	8.8e-23	80.6	3.7	1.1e-22	80.4	3.7	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
AstE_AspA	PF04952.14	gi|336253968|ref|YP_004597075.1|	-	9.4e-67	225.1	0.0	1.2e-66	224.8	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Biotin_lipoyl	PF00364.22	gi|336253968|ref|YP_004597075.1|	-	0.13	12.1	0.0	0.41	10.5	0.0	1.8	1	1	0	1	1	1	0	Biotin-requiring	enzyme
Acetyltransf_1	PF00583.25	gi|336253969|ref|YP_004597076.1|	-	4e-10	40.0	0.0	6.5e-10	39.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336253969|ref|YP_004597076.1|	-	2.2e-09	37.3	0.0	3.2e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336253969|ref|YP_004597076.1|	-	7.1e-09	36.0	0.1	1.5e-08	34.9	0.1	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336253969|ref|YP_004597076.1|	-	9.6e-06	25.7	0.0	2.1e-05	24.6	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336253969|ref|YP_004597076.1|	-	0.00045	20.1	0.0	0.0015	18.5	0.0	1.8	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|336253969|ref|YP_004597076.1|	-	0.0036	17.4	0.0	0.0055	16.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|336253969|ref|YP_004597076.1|	-	0.013	15.6	2.7	0.21	11.7	0.5	2.2	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
AstA	PF04958.12	gi|336253969|ref|YP_004597076.1|	-	0.074	11.6	0.0	1.6	7.2	0.0	2.3	2	1	1	3	3	3	0	Arginine	N-succinyltransferase	beta	subunit
Polysacc_synt	PF01943.17	gi|336253970|ref|YP_004597077.1|	-	5.7e-30	104.6	14.5	5.7e-30	104.6	14.5	2.4	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|336253970|ref|YP_004597077.1|	-	2.1e-24	86.3	2.9	2.1e-24	86.3	2.9	2.2	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|336253970|ref|YP_004597077.1|	-	1.8e-19	70.2	20.1	1.8e-19	70.2	20.1	4.0	3	1	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MatE	PF01554.18	gi|336253970|ref|YP_004597077.1|	-	5.7e-06	26.1	1.0	5.7e-06	26.1	1.0	3.7	3	2	0	3	3	3	2	MatE
Mn_catalase	PF05067.12	gi|336253972|ref|YP_004597079.1|	-	3.5e-80	269.0	0.1	4.2e-80	268.8	0.1	1.0	1	0	0	1	1	1	1	Manganese	containing	catalase
Rubrerythrin	PF02915.17	gi|336253972|ref|YP_004597079.1|	-	0.011	16.1	0.1	0.027	14.9	0.2	1.6	2	0	0	2	2	2	0	Rubrerythrin
Foie-gras_1	PF11817.8	gi|336253972|ref|YP_004597079.1|	-	0.029	14.0	0.1	0.04	13.5	0.1	1.2	1	0	0	1	1	1	0	Foie	gras	liver	health	family	1
Ferritin	PF00210.24	gi|336253972|ref|YP_004597079.1|	-	0.11	12.5	4.2	0.054	13.4	1.3	2.0	2	1	0	2	2	2	0	Ferritin-like	domain
RimK	PF08443.11	gi|336253973|ref|YP_004597080.1|	-	2.1e-22	79.7	0.0	3.6e-22	78.9	0.0	1.4	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
Zn_protease	PF05618.11	gi|336253973|ref|YP_004597080.1|	-	6.6e-10	39.0	0.7	1.6e-07	31.3	0.1	2.3	1	1	1	2	2	2	2	Putative	ATP-dependant	zinc	protease
GSH-S_ATP	PF02955.16	gi|336253973|ref|YP_004597080.1|	-	3.6e-08	33.0	0.0	6.1e-08	32.3	0.0	1.4	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|336253973|ref|YP_004597080.1|	-	3.4e-07	30.4	0.0	1.5e-06	28.4	0.0	2.1	2	0	0	2	2	2	1	ATP-grasp	domain
R2K_3	PF14243.6	gi|336253973|ref|YP_004597080.1|	-	3.5e-05	23.9	1.1	8.4e-05	22.7	1.1	1.6	1	0	0	1	1	1	1	ATP-grasp	domain,	R2K	clade	family	3
gag-asp_proteas	PF13975.6	gi|336253973|ref|YP_004597080.1|	-	0.00063	20.3	0.4	0.0021	18.6	0.2	2.0	2	0	0	2	2	2	1	gag-polyprotein	putative	aspartyl	protease
R2K_2	PF18299.1	gi|336253973|ref|YP_004597080.1|	-	0.0064	16.4	0.2	0.013	15.3	0.2	1.4	1	0	0	1	1	1	1	ATP-grasp	domain,	R2K	clade	family	2
DUF5488	PF17590.2	gi|336253973|ref|YP_004597080.1|	-	0.024	14.4	0.3	0.076	12.8	0.0	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5488)
Asp_protease_2	PF13650.6	gi|336253973|ref|YP_004597080.1|	-	0.046	14.4	2.7	0.066	13.9	0.8	2.3	3	0	0	3	3	3	0	Aspartyl	protease
ATPgrasp_YheCD	PF14398.6	gi|336253973|ref|YP_004597080.1|	-	0.18	11.0	0.0	0.75	9.0	0.0	2.1	1	1	0	1	1	1	0	YheC/D	like	ATP-grasp
PRC	PF05239.16	gi|336253974|ref|YP_004597081.1|	-	9.9e-10	38.4	0.0	1.2e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
Cadherin_4	PF17803.1	gi|336253974|ref|YP_004597081.1|	-	0.1	13.2	0.4	0.19	12.4	0.2	1.5	2	0	0	2	2	2	0	Bacterial	cadherin-like	domain
peroxidase	PF00141.23	gi|336253975|ref|YP_004597082.1|	-	6.9e-88	294.2	0.0	9.1e-50	169.5	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
ChapFlgA	PF13144.6	gi|336253976|ref|YP_004597083.1|	-	0.14	12.2	5.1	3.9	7.6	0.3	2.7	2	0	0	2	2	2	0	Chaperone	for	flagella	basal	body	P-ring	formation
HhH-GPD	PF00730.25	gi|336253977|ref|YP_004597084.1|	-	1.3e-15	57.8	0.0	1.7e-15	57.4	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
DUF2238	PF09997.9	gi|336253978|ref|YP_004597085.1|	-	2.2e-05	24.3	2.1	0.00059	19.7	2.0	2.2	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
SK_channel	PF03530.14	gi|336253979|ref|YP_004597086.1|	-	0.56	10.2	5.8	4.7	7.2	2.7	2.4	2	1	0	2	2	2	0	Calcium-activated	SK	potassium	channel
DUF5357	PF17310.2	gi|336253979|ref|YP_004597086.1|	-	2.3	6.7	7.6	0.22	10.0	2.2	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5357)
YdjM	PF04307.14	gi|336253980|ref|YP_004597087.1|	-	6.8e-06	25.5	19.5	3.3e-05	23.3	14.1	2.9	1	1	1	2	2	2	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|336253980|ref|YP_004597087.1|	-	3.5	7.3	9.7	1.1	8.9	3.7	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4184)
Astro_capsid_p	PF12226.8	gi|336253981|ref|YP_004597088.1|	-	1.2	8.2	9.9	1.4	8.0	9.9	1.1	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
Cwf_Cwc_15	PF04889.12	gi|336253981|ref|YP_004597088.1|	-	7.5	6.2	15.8	8.7	6.0	15.8	1.1	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Acyl-CoA_dh_1	PF00441.24	gi|336253982|ref|YP_004597089.1|	-	4e-52	176.4	3.5	6.7e-52	175.7	3.5	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|336253982|ref|YP_004597089.1|	-	4.1e-36	124.1	0.1	1.3e-35	122.4	0.1	1.9	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|336253982|ref|YP_004597089.1|	-	1.4e-28	99.8	4.6	2.2e-28	99.2	4.6	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|336253982|ref|YP_004597089.1|	-	3.8e-26	91.1	0.0	7.8e-26	90.1	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
HpaB	PF03241.13	gi|336253982|ref|YP_004597089.1|	-	0.035	13.2	0.0	0.059	12.5	0.0	1.3	1	0	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Acetyltransf_CG	PF14542.6	gi|336253982|ref|YP_004597089.1|	-	0.036	14.2	0.7	0.37	11.0	0.2	2.6	2	1	0	3	3	3	0	GCN5-related	N-acetyl-transferase
S-l_SbsC_C	PF18316.1	gi|336253982|ref|YP_004597089.1|	-	0.082	13.4	0.4	20	5.8	0.2	2.7	2	0	0	2	2	2	0	S-layer	protein	SbsC	C-terminal	domain
2OG-FeII_Oxy_2	PF13532.6	gi|336253982|ref|YP_004597089.1|	-	0.17	12.0	0.0	0.4	10.8	0.0	1.5	1	0	0	1	1	1	0	2OG-Fe(II)	oxygenase	superfamily
3HCDH_N	PF02737.18	gi|336253983|ref|YP_004597090.1|	-	1.2e-68	230.6	1.6	1.7e-68	230.0	1.6	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH_1	PF00378.20	gi|336253983|ref|YP_004597090.1|	-	1.9e-61	207.6	0.0	4.2e-61	206.5	0.0	1.5	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH	PF00725.22	gi|336253983|ref|YP_004597090.1|	-	1.6e-50	169.7	1.1	1.9e-31	108.6	0.0	3.7	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|336253983|ref|YP_004597090.1|	-	1e-36	127.2	0.9	1.7e-32	113.3	0.0	3.1	2	1	1	3	3	3	2	Enoyl-CoA	hydratase/isomerase
NAD_Gly3P_dh_N	PF01210.23	gi|336253983|ref|YP_004597090.1|	-	4e-08	33.4	0.1	7.8e-08	32.4	0.1	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.15	gi|336253983|ref|YP_004597090.1|	-	1.7e-07	31.6	0.9	5.8e-07	29.8	0.9	2.0	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|336253983|ref|YP_004597090.1|	-	5.2e-05	23.7	3.3	0.00013	22.5	2.0	2.3	2	1	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|336253983|ref|YP_004597090.1|	-	0.0067	16.0	0.1	0.011	15.3	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
OTCace	PF00185.24	gi|336253983|ref|YP_004597090.1|	-	0.0069	16.5	0.4	0.015	15.4	0.4	1.5	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Pyr_redox_2	PF07992.14	gi|336253983|ref|YP_004597090.1|	-	0.032	13.5	0.1	0.055	12.7	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|336253983|ref|YP_004597090.1|	-	0.063	12.6	3.9	0.55	9.6	1.9	2.7	2	1	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|336253983|ref|YP_004597090.1|	-	0.066	12.5	2.0	0.25	10.6	0.6	2.5	2	1	1	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|336253983|ref|YP_004597090.1|	-	0.073	13.6	0.0	0.14	12.7	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
PALP	PF00291.25	gi|336253983|ref|YP_004597090.1|	-	0.083	12.3	0.2	0.21	11.0	0.2	1.6	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
DUF3645	PF12359.8	gi|336253983|ref|YP_004597090.1|	-	0.086	12.2	0.0	0.23	10.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3645)
DLH	PF01738.18	gi|336253983|ref|YP_004597090.1|	-	0.21	11.1	2.0	5.2	6.5	0.3	2.2	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
IlvN	PF07991.12	gi|336253983|ref|YP_004597090.1|	-	0.3	10.6	5.9	6.8	6.2	5.9	2.2	1	1	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Shikimate_DH	PF01488.20	gi|336253983|ref|YP_004597090.1|	-	0.34	11.0	4.1	36	4.4	3.7	3.0	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
HalX	PF08663.10	gi|336253984|ref|YP_004597091.1|	-	6.6e-24	84.0	4.3	1.6e-23	82.8	4.3	1.7	1	0	0	1	1	1	1	HalX	domain
Response_reg	PF00072.24	gi|336253984|ref|YP_004597091.1|	-	2.5e-21	75.9	1.1	3e-21	75.7	0.1	1.6	2	0	0	2	2	2	1	Response	regulator	receiver	domain
MtrB	PF05440.12	gi|336253984|ref|YP_004597091.1|	-	0.072	13.5	0.3	0.26	11.7	0.0	2.0	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
DUF772	PF05598.11	gi|336253984|ref|YP_004597091.1|	-	0.14	12.2	0.1	0.39	10.8	0.0	1.8	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
SPW	PF03779.14	gi|336253985|ref|YP_004597092.1|	-	2.9e-12	45.9	10.3	1.7e-06	27.5	0.2	2.3	2	0	0	2	2	2	2	SPW	repeat
7TMR-DISM_7TM	PF07695.11	gi|336253985|ref|YP_004597092.1|	-	0.0041	17.0	2.4	0.067	13.1	3.1	1.9	1	1	0	1	1	1	1	7TM	diverse	intracellular	signalling
Cation_efflux	PF01545.21	gi|336253985|ref|YP_004597092.1|	-	0.027	14.2	4.5	0.044	13.5	0.2	2.0	1	1	1	2	2	2	0	Cation	efflux	family
OppC_N	PF12911.7	gi|336253985|ref|YP_004597092.1|	-	3.2	7.8	6.7	1.1	9.3	0.7	2.6	1	1	1	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Acyl-CoA_dh_1	PF00441.24	gi|336253986|ref|YP_004597093.1|	-	4.2e-41	140.7	4.0	8.5e-41	139.7	4.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|336253986|ref|YP_004597093.1|	-	1.3e-27	95.8	0.0	3.7e-27	94.3	0.0	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|336253986|ref|YP_004597093.1|	-	3.2e-24	85.7	0.4	8.5e-24	84.4	0.4	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|336253986|ref|YP_004597093.1|	-	1.1e-16	61.3	6.8	1.9e-16	60.5	6.8	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Mor	PF08765.11	gi|336253986|ref|YP_004597093.1|	-	0.13	12.3	0.0	7.3	6.6	0.0	2.5	2	0	0	2	2	2	0	Mor	transcription	activator	family
HTH_10	PF04967.12	gi|336253987|ref|YP_004597094.1|	-	6e-15	54.8	0.0	9.5e-15	54.1	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336253987|ref|YP_004597094.1|	-	2.3e-12	47.1	2.0	3.2e-12	46.6	2.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336253987|ref|YP_004597094.1|	-	5e-06	25.9	0.1	1.1e-05	24.8	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336253987|ref|YP_004597094.1|	-	0.00026	20.8	0.0	0.00049	19.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336253987|ref|YP_004597094.1|	-	0.00031	20.5	0.1	0.00058	19.6	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336253987|ref|YP_004597094.1|	-	0.0019	17.7	0.0	0.0035	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|336253987|ref|YP_004597094.1|	-	0.01	15.5	0.0	0.11	12.2	0.0	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_50	PF18024.1	gi|336253987|ref|YP_004597094.1|	-	0.086	12.5	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336253987|ref|YP_004597094.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
UPF0122	PF04297.14	gi|336253987|ref|YP_004597094.1|	-	0.21	11.8	0.0	0.36	11.1	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HATPase_c	PF02518.26	gi|336253988|ref|YP_004597095.1|	-	2.7e-28	98.7	0.0	4.8e-28	97.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336253988|ref|YP_004597095.1|	-	7.1e-11	42.0	3.3	4.3e-10	39.5	0.0	3.0	2	1	1	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
TMEM100	PF16311.5	gi|336253988|ref|YP_004597095.1|	-	0.0016	18.1	0.5	0.028	14.0	0.1	2.2	2	0	0	2	2	2	1	Transmembrane	protein	100
HATPase_c_5	PF14501.6	gi|336253988|ref|YP_004597095.1|	-	0.0017	18.3	0.0	0.048	13.6	0.0	2.3	1	1	0	1	1	1	1	GHKL	domain
HisKA_4TM	PF16926.5	gi|336253988|ref|YP_004597095.1|	-	0.003	17.1	6.6	0.0069	16.0	6.6	1.6	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
ZapB	PF06005.12	gi|336253988|ref|YP_004597095.1|	-	0.018	15.5	4.0	0.038	14.4	4.0	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapB
adh_short	PF00106.25	gi|336253988|ref|YP_004597095.1|	-	0.05	13.1	0.1	7.4	6.0	0.1	2.4	2	0	0	2	2	2	0	short	chain	dehydrogenase
KASH_CCD	PF14662.6	gi|336253988|ref|YP_004597095.1|	-	0.066	13.0	2.7	0.11	12.4	2.7	1.2	1	0	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
Cupin_2	PF07883.11	gi|336253990|ref|YP_004597097.1|	-	7.6e-13	48.0	0.2	1e-12	47.5	0.2	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|336253990|ref|YP_004597097.1|	-	8e-06	25.8	0.0	1e-05	25.4	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|336253990|ref|YP_004597097.1|	-	0.0002	21.0	0.1	0.0003	20.4	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
EutQ	PF06249.12	gi|336253990|ref|YP_004597097.1|	-	0.00046	20.0	0.0	0.00056	19.7	0.0	1.2	1	0	0	1	1	1	1	Ethanolamine	utilisation	protein	EutQ
AraC_binding_2	PF14525.6	gi|336253990|ref|YP_004597097.1|	-	0.0034	17.1	0.0	0.004	16.9	0.0	1.1	1	0	0	1	1	1	1	AraC-binding-like	domain
MannoseP_isomer	PF01050.18	gi|336253990|ref|YP_004597097.1|	-	0.0034	17.3	0.0	0.0041	17.0	0.0	1.2	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
KduI	PF04962.12	gi|336253990|ref|YP_004597097.1|	-	0.0071	15.7	0.0	0.0089	15.4	0.0	1.2	1	0	0	1	1	1	1	KduI/IolB	family
CENP-C_C	PF11699.8	gi|336253990|ref|YP_004597097.1|	-	0.022	15.0	0.0	0.03	14.5	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
Cupin_1	PF00190.22	gi|336253990|ref|YP_004597097.1|	-	0.031	13.9	0.0	0.037	13.6	0.0	1.1	1	0	0	1	1	1	0	Cupin
Pirin_C	PF05726.13	gi|336253990|ref|YP_004597097.1|	-	0.063	13.6	0.0	0.087	13.2	0.0	1.2	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
FdtA	PF05523.11	gi|336253990|ref|YP_004597097.1|	-	0.07	12.9	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	WxcM-like,	C-terminal
CTP_synth_N	PF06418.14	gi|336253990|ref|YP_004597097.1|	-	0.079	12.3	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	CTP	synthase	N-terminus
Cupin_6	PF12852.7	gi|336253990|ref|YP_004597097.1|	-	0.091	12.5	0.0	0.15	11.8	0.0	1.3	1	1	0	1	1	1	0	Cupin
NikR_C	PF08753.11	gi|336253991|ref|YP_004597098.1|	-	7.8e-21	74.0	2.2	1.2e-20	73.4	2.2	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|336253991|ref|YP_004597098.1|	-	3.1e-07	30.1	0.0	5e-07	29.4	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_5	PF07878.11	gi|336253991|ref|YP_004597098.1|	-	0.0016	18.3	0.0	0.0029	17.5	0.0	1.3	1	0	0	1	1	1	1	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
HicB_lk_antitox	PF15919.5	gi|336253991|ref|YP_004597098.1|	-	0.022	14.9	0.0	0.041	14.0	0.0	1.5	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF4276	PF14103.6	gi|336253991|ref|YP_004597098.1|	-	0.12	12.6	0.1	0.13	12.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4276)
Creatininase	PF02633.14	gi|336253992|ref|YP_004597099.1|	-	1.2e-65	221.4	1.0	1.3e-65	221.2	1.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
TM_helix	PF05552.12	gi|336253993|ref|YP_004597100.1|	-	2.2e-21	75.6	3.8	9.9e-14	51.1	0.2	3.0	3	0	0	3	3	3	2	Conserved	TM	helix
Bacillus_PapR	PF05968.11	gi|336253993|ref|YP_004597100.1|	-	0.11	12.4	0.3	0.25	11.2	0.3	1.6	1	0	0	1	1	1	0	Bacillus	PapR	protein
PMT_4TMC	PF16192.5	gi|336253993|ref|YP_004597100.1|	-	3.1	7.3	5.9	0.53	9.8	1.6	1.8	2	1	0	2	2	2	0	C-terminal	four	TMM	region	of	protein-O-mannosyltransferase
DUF1467	PF07330.12	gi|336253995|ref|YP_004597102.1|	-	0.065	13.2	0.5	0.14	12.1	0.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1467)
DUF4131	PF13567.6	gi|336253995|ref|YP_004597102.1|	-	7.2	6.2	8.9	48	3.6	4.9	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
PAS_4	PF08448.10	gi|336253996|ref|YP_004597103.1|	-	1.5e-36	125.0	19.8	3.9e-14	52.8	0.1	5.0	6	0	0	6	6	5	4	PAS	fold
PAS	PF00989.25	gi|336253996|ref|YP_004597103.1|	-	1.7e-27	95.7	0.3	1.8e-07	31.2	0.0	5.3	4	1	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.26	gi|336253996|ref|YP_004597103.1|	-	1.1e-26	93.6	0.1	2.2e-26	92.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336253996|ref|YP_004597103.1|	-	1.8e-23	82.8	0.0	1.4e-05	25.3	0.0	4.7	4	0	0	4	4	4	4	PAS	domain
PAS_8	PF13188.7	gi|336253996|ref|YP_004597103.1|	-	3.2e-20	71.7	2.6	4.4e-06	26.6	0.0	5.1	4	0	0	4	4	4	3	PAS	domain
PAS_7	PF12860.7	gi|336253996|ref|YP_004597103.1|	-	3e-14	53.2	0.4	7.2e-06	26.2	0.0	5.4	4	1	0	4	4	4	2	PAS	fold
GAF_2	PF13185.6	gi|336253996|ref|YP_004597103.1|	-	3.1e-13	50.2	0.6	1.5e-12	48.0	0.1	2.5	2	0	0	2	2	2	1	GAF	domain
HisKA	PF00512.25	gi|336253996|ref|YP_004597103.1|	-	1.9e-11	43.8	0.2	1.9e-11	43.8	0.2	2.8	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.6	gi|336253996|ref|YP_004597103.1|	-	2.5e-07	31.1	0.0	6.4e-07	29.8	0.0	1.8	2	0	0	2	2	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|336253996|ref|YP_004597103.1|	-	1.6e-05	24.7	0.0	2.9e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336253996|ref|YP_004597103.1|	-	0.00019	21.4	0.9	0.00045	20.2	0.1	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_3	PF08447.12	gi|336253996|ref|YP_004597103.1|	-	0.0019	18.4	0.4	0.28	11.5	0.1	4.2	5	1	0	5	5	4	1	PAS	fold
PAS_11	PF14598.6	gi|336253996|ref|YP_004597103.1|	-	0.0091	16.1	0.0	0.02	15.0	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.6	gi|336253996|ref|YP_004597103.1|	-	0.032	14.1	0.0	0.066	13.0	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Holin_BhlA	PF10960.8	gi|336253996|ref|YP_004597103.1|	-	0.38	10.8	1.4	2.1	8.4	0.2	2.3	2	0	0	2	2	2	0	BhlA	holin	family
DUF4293	PF14126.6	gi|336253997|ref|YP_004597104.1|	-	0.0059	16.9	0.7	0.0091	16.3	0.6	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4293)
Methyltransf_3	PF01596.17	gi|336253998|ref|YP_004597105.1|	-	2.6e-23	82.3	0.0	3.6e-23	81.9	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|336253998|ref|YP_004597105.1|	-	1.7e-13	51.5	0.0	3e-13	50.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336253998|ref|YP_004597105.1|	-	8.7e-06	25.6	0.0	1.3e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336253998|ref|YP_004597105.1|	-	0.00022	21.9	0.0	0.00037	21.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|336253998|ref|YP_004597105.1|	-	0.00092	18.8	0.0	0.0018	17.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|336253998|ref|YP_004597105.1|	-	0.011	15.5	0.0	0.016	15.0	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_12	PF08242.12	gi|336253998|ref|YP_004597105.1|	-	0.018	15.8	0.0	0.039	14.7	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
DUF938	PF06080.12	gi|336253998|ref|YP_004597105.1|	-	0.14	11.9	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
ROK	PF00480.20	gi|336254000|ref|YP_004597107.1|	-	7.9e-44	150.3	0.0	9.1e-44	150.1	0.0	1.0	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.20	gi|336254000|ref|YP_004597107.1|	-	0.00044	19.8	0.5	0.0055	16.2	0.1	2.1	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
FGGY_N	PF00370.21	gi|336254000|ref|YP_004597107.1|	-	0.029	14.0	0.1	0.1	12.2	0.1	1.8	1	1	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
LVIVD	PF08309.11	gi|336254001|ref|YP_004597108.1|	-	7.4e-18	63.6	0.4	0.00054	19.2	0.0	6.3	6	0	0	6	6	6	5	LVIVD	repeat
Beta_propel	PF09826.9	gi|336254001|ref|YP_004597108.1|	-	2.3e-08	33.4	0.0	0.0019	17.2	0.0	3.9	4	0	0	4	4	4	2	Beta	propeller	domain
SBP56	PF05694.11	gi|336254001|ref|YP_004597108.1|	-	0.007	15.2	0.2	4.9	5.9	0.0	3.8	3	1	0	4	4	4	1	56kDa	selenium	binding	protein	(SBP56)
Putative_PNPOx	PF01243.20	gi|336254002|ref|YP_004597109.1|	-	3.4e-18	65.6	0.0	4.4e-18	65.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|336254002|ref|YP_004597109.1|	-	1.1e-10	41.6	0.2	1.4e-10	41.3	0.2	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|336254002|ref|YP_004597109.1|	-	8.7e-06	25.4	0.0	1e-05	25.2	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
UspB	PF10625.9	gi|336254002|ref|YP_004597109.1|	-	0.058	13.4	0.0	0.084	12.8	0.0	1.2	1	0	0	1	1	1	0	Universal	stress	protein	B	(UspB)
tRNA-synt_1	PF00133.22	gi|336254003|ref|YP_004597110.1|	-	8.9e-60	202.6	0.0	1.2e-40	139.4	0.9	4.6	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|336254003|ref|YP_004597110.1|	-	4.3e-58	195.9	0.0	7.2e-58	195.1	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|336254003|ref|YP_004597110.1|	-	4.2e-30	104.8	0.0	1.6e-21	76.5	0.0	4.5	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|336254003|ref|YP_004597110.1|	-	1.9e-17	63.6	0.0	3.3e-17	62.8	0.0	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.18	gi|336254003|ref|YP_004597110.1|	-	0.00058	18.9	0.0	0.5	9.2	0.0	3.2	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|336254003|ref|YP_004597110.1|	-	0.0023	17.3	0.0	1.2	8.4	0.1	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
PknG_rubred	PF16919.5	gi|336254003|ref|YP_004597110.1|	-	0.0032	17.6	0.7	0.0067	16.6	0.0	1.9	2	0	0	2	2	2	1	Protein	kinase	G	rubredoxin	domain
DZR	PF12773.7	gi|336254003|ref|YP_004597110.1|	-	0.013	15.5	3.3	2.5	8.2	0.5	2.5	2	0	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|336254003|ref|YP_004597110.1|	-	0.016	14.7	10.2	0.83	9.2	0.6	4.1	3	0	0	3	3	3	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|336254003|ref|YP_004597110.1|	-	0.062	13.4	6.9	0.17	12.0	0.3	3.2	3	0	0	3	3	3	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|336254003|ref|YP_004597110.1|	-	0.42	10.7	6.5	0.45	10.6	0.1	3.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|336254003|ref|YP_004597110.1|	-	1.5	8.4	7.3	12	5.4	0.2	3.9	4	0	0	4	4	4	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|336254003|ref|YP_004597110.1|	-	1.8	8.8	8.2	4.2	7.6	0.3	3.2	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
HalOD1	PF18545.1	gi|336254004|ref|YP_004597111.1|	-	5.6e-26	90.6	0.1	7e-26	90.3	0.1	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_31	PF13560.6	gi|336254004|ref|YP_004597111.1|	-	0.099	13.0	0.1	0.19	12.1	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Mago-bind	PF09282.10	gi|336254004|ref|YP_004597111.1|	-	1.6	8.7	5.5	13	5.8	0.1	3.0	3	0	0	3	3	3	0	Mago	binding
DUF420	PF04238.12	gi|336254005|ref|YP_004597112.1|	-	9.1e-38	129.5	12.0	9.1e-38	129.5	12.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
Cytochrom_B561	PF03188.16	gi|336254005|ref|YP_004597112.1|	-	0.004	17.3	1.1	0.004	17.3	1.1	2.2	2	1	0	2	2	2	1	Eukaryotic	cytochrome	b561
TM140	PF14985.6	gi|336254005|ref|YP_004597112.1|	-	0.0079	15.8	1.3	0.0079	15.8	1.3	2.2	2	1	0	2	2	2	1	TM140	protein	family
DUF2306	PF10067.9	gi|336254005|ref|YP_004597112.1|	-	0.012	15.8	14.0	0.022	15.0	2.2	2.3	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2306)
DUF3413	PF11893.8	gi|336254005|ref|YP_004597112.1|	-	0.12	11.6	8.9	0.55	9.4	1.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3413)
DUF1240	PF06836.12	gi|336254005|ref|YP_004597112.1|	-	1.5	9.4	5.2	0.23	12.0	0.5	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1240)
Pyridox_ox_2	PF12900.7	gi|336254006|ref|YP_004597113.1|	-	0.00053	20.0	0.1	0.00074	19.5	0.1	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|336254006|ref|YP_004597113.1|	-	0.00055	20.1	0.0	0.0009	19.4	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
PB1	PF00564.24	gi|336254006|ref|YP_004597113.1|	-	0.082	12.8	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	PB1	domain
ABC2_membrane	PF01061.24	gi|336254007|ref|YP_004597114.1|	-	9.1e-28	97.1	7.1	9.1e-28	97.1	7.1	1.3	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|336254007|ref|YP_004597114.1|	-	3.1e-15	56.1	2.6	3.1e-15	56.1	2.6	2.0	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336254007|ref|YP_004597114.1|	-	4.2e-07	29.5	10.3	4.2e-07	29.5	10.3	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
12TM_1	PF09847.9	gi|336254007|ref|YP_004597114.1|	-	0.0011	18.2	1.1	0.0016	17.6	1.1	1.2	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
OppC_N	PF12911.7	gi|336254007|ref|YP_004597114.1|	-	0.024	14.6	0.2	0.024	14.6	0.2	3.4	3	1	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|336254008|ref|YP_004597115.1|	-	9e-29	100.7	0.0	1.5e-28	100.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336254008|ref|YP_004597115.1|	-	1e-16	61.6	0.0	1.2e-09	38.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|336254008|ref|YP_004597115.1|	-	0.00016	22.2	0.1	0.00024	21.7	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|336254008|ref|YP_004597115.1|	-	0.00016	21.4	0.6	0.0029	17.4	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|336254008|ref|YP_004597115.1|	-	0.00018	21.3	0.0	0.11	12.2	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_28	PF13521.6	gi|336254008|ref|YP_004597115.1|	-	0.00022	21.5	0.0	0.00057	20.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336254008|ref|YP_004597115.1|	-	0.00029	20.5	0.1	0.00051	19.7	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|336254008|ref|YP_004597115.1|	-	0.0066	16.2	0.0	0.13	11.9	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|336254008|ref|YP_004597115.1|	-	0.0077	16.2	0.3	0.017	15.1	0.1	1.6	2	0	0	2	2	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_22	PF13401.6	gi|336254008|ref|YP_004597115.1|	-	0.0096	16.2	0.0	0.017	15.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336254008|ref|YP_004597115.1|	-	0.013	15.4	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_18	PF13238.6	gi|336254008|ref|YP_004597115.1|	-	0.019	15.5	0.1	1.5	9.4	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
AAA_16	PF13191.6	gi|336254008|ref|YP_004597115.1|	-	0.02	15.3	0.3	0.037	14.4	0.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336254008|ref|YP_004597115.1|	-	0.021	15.0	1.0	0.057	13.6	0.2	2.3	2	1	0	2	2	1	0	AAA	domain
cobW	PF02492.19	gi|336254008|ref|YP_004597115.1|	-	0.021	14.4	0.0	0.061	12.9	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
SMC_N	PF02463.19	gi|336254008|ref|YP_004597115.1|	-	0.022	14.2	0.0	0.2	11.0	0.0	2.0	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
MMR_HSR1	PF01926.23	gi|336254008|ref|YP_004597115.1|	-	0.029	14.5	0.0	0.085	12.9	0.0	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.14	gi|336254008|ref|YP_004597115.1|	-	0.029	14.4	0.1	1.1	9.2	0.0	2.5	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_24	PF13479.6	gi|336254008|ref|YP_004597115.1|	-	0.033	13.9	0.0	0.18	11.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|336254008|ref|YP_004597115.1|	-	0.037	14.5	0.0	0.095	13.1	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|336254008|ref|YP_004597115.1|	-	0.057	13.0	0.3	0.23	11.0	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|336254008|ref|YP_004597115.1|	-	0.1	11.4	0.1	0.15	10.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_27	PF13514.6	gi|336254008|ref|YP_004597115.1|	-	0.12	11.9	0.1	0.25	10.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2228	PF10228.9	gi|336254008|ref|YP_004597115.1|	-	0.25	11.0	0.0	0.35	10.6	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2228)
Acetyltransf_9	PF13527.7	gi|336254009|ref|YP_004597116.1|	-	5e-19	68.7	0.0	4.7e-18	65.5	0.0	2.1	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336254009|ref|YP_004597116.1|	-	0.00046	20.4	0.0	0.0085	16.3	0.0	2.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_6	PF13480.7	gi|336254009|ref|YP_004597116.1|	-	0.0006	20.0	2.1	0.018	15.2	0.4	2.7	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336254009|ref|YP_004597116.1|	-	0.073	13.5	0.0	0.22	11.9	0.0	1.8	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336254009|ref|YP_004597116.1|	-	0.1	12.5	0.0	1.1	9.2	0.0	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336254009|ref|YP_004597116.1|	-	0.1	12.6	0.1	0.78	9.8	0.0	2.4	3	0	0	3	3	3	0	FR47-like	protein
Bac_luciferase	PF00296.20	gi|336254010|ref|YP_004597117.1|	-	7.9e-52	176.6	4.3	2.1e-51	175.3	4.3	1.5	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
DUF4142	PF13628.6	gi|336254010|ref|YP_004597117.1|	-	0.0029	17.8	0.2	0.0047	17.2	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4142)
DpnD-PcfM	PF14207.6	gi|336254010|ref|YP_004597117.1|	-	0.24	11.3	0.3	0.24	11.3	0.3	2.0	2	0	0	2	2	2	0	DpnD/PcfM-like	protein
Complex1_51K	PF01512.17	gi|336254011|ref|YP_004597118.1|	-	6.1e-18	65.1	0.0	1e-17	64.4	0.0	1.4	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
RnfC_N	PF13375.6	gi|336254011|ref|YP_004597118.1|	-	7e-07	29.1	0.0	1.2e-06	28.4	0.0	1.4	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
SLBB	PF10531.9	gi|336254011|ref|YP_004597118.1|	-	0.00019	21.2	0.0	0.00046	20.0	0.0	1.7	1	0	0	1	1	1	1	SLBB	domain
HTH_10	PF04967.12	gi|336254012|ref|YP_004597119.1|	-	2.6e-11	43.1	0.0	4e-11	42.5	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|336254012|ref|YP_004597119.1|	-	0.19	11.5	0.0	0.36	10.5	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Raffinose_syn	PF05691.12	gi|336254012|ref|YP_004597119.1|	-	0.27	9.0	0.0	0.49	8.1	0.0	1.4	2	0	0	2	2	2	0	Raffinose	synthase	or	seed	imbibition	protein	Sip1
HTH_31	PF13560.6	gi|336254012|ref|YP_004597119.1|	-	0.27	11.6	3.2	9.4	6.7	0.3	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
Aldo_ket_red	PF00248.21	gi|336254013|ref|YP_004597120.1|	-	3.8e-56	190.5	0.0	4.6e-56	190.2	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HBS1_N	PF08938.10	gi|336254013|ref|YP_004597120.1|	-	0.02	15.2	0.2	0.32	11.3	0.0	2.5	2	0	0	2	2	2	0	HBS1	N-terminus
DUF418	PF04235.12	gi|336254014|ref|YP_004597121.1|	-	1.9e-48	164.5	12.3	1.9e-48	164.5	12.3	1.9	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF418)
Pterin_bind	PF00809.22	gi|336254015|ref|YP_004597122.1|	-	3.1e-79	266.1	1.3	4.5e-79	265.6	1.3	1.2	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|336254015|ref|YP_004597122.1|	-	7.4e-12	45.7	0.0	1.2e-11	45.0	0.0	1.4	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|336254015|ref|YP_004597122.1|	-	2.5e-09	37.3	0.0	9.9e-09	35.3	0.0	2.0	2	0	0	2	2	2	1	Mur	ligase	family,	glutamate	ligase	domain
PEP_mutase	PF13714.6	gi|336254015|ref|YP_004597122.1|	-	0.00076	19.0	5.1	0.043	13.3	0.2	4.1	3	2	0	4	4	4	2	Phosphoenolpyruvate	phosphomutase
CAT_RBD	PF03123.15	gi|336254015|ref|YP_004597122.1|	-	0.08	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	CAT	RNA	binding	domain
DFP	PF04127.15	gi|336254015|ref|YP_004597122.1|	-	0.72	9.6	3.1	15	5.3	0.0	2.9	3	0	0	3	3	3	0	DNA	/	pantothenate	metabolism	flavoprotein
Cupin_2	PF07883.11	gi|336254016|ref|YP_004597123.1|	-	9.1e-10	38.1	0.7	1.4e-09	37.5	0.7	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|336254016|ref|YP_004597123.1|	-	0.0011	18.8	0.0	0.0014	18.5	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|336254016|ref|YP_004597123.1|	-	0.0061	16.2	0.1	0.0087	15.7	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Pirin_C	PF05726.13	gi|336254016|ref|YP_004597123.1|	-	0.16	12.3	0.0	0.24	11.8	0.0	1.2	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
Phage_holin_3_3	PF16083.5	gi|336254017|ref|YP_004597124.1|	-	0.096	12.8	10.6	1.9	8.7	3.7	2.8	2	1	0	2	2	2	0	LydA	holin	phage,	holin	superfamily	III
ABC_tran	PF00005.27	gi|336254018|ref|YP_004597125.1|	-	3.4e-28	98.9	0.0	4.5e-28	98.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336254018|ref|YP_004597125.1|	-	2.3e-12	47.4	0.0	2.9e-08	33.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|336254018|ref|YP_004597125.1|	-	0.0019	18.0	0.0	2.3	7.9	0.0	2.2	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336254018|ref|YP_004597125.1|	-	0.0089	16.4	0.1	0.016	15.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336254018|ref|YP_004597125.1|	-	0.018	15.6	2.0	0.02	15.4	0.3	1.7	1	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|336254018|ref|YP_004597125.1|	-	0.021	14.5	0.7	0.041	13.6	0.7	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336254018|ref|YP_004597125.1|	-	0.088	12.6	0.4	0.15	11.8	0.4	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|336254018|ref|YP_004597125.1|	-	0.088	13.1	0.8	0.43	10.9	0.8	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|336254018|ref|YP_004597125.1|	-	0.094	12.3	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336254018|ref|YP_004597125.1|	-	0.13	12.7	0.0	0.35	11.3	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|336254018|ref|YP_004597125.1|	-	0.16	11.2	0.2	3.7	6.8	0.1	2.1	1	1	0	2	2	2	0	Zeta	toxin
AAA_13	PF13166.6	gi|336254018|ref|YP_004597125.1|	-	0.25	10.0	0.0	0.63	8.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|336254018|ref|YP_004597125.1|	-	0.35	10.5	1.4	0.57	9.8	1.4	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Aldo_ket_red	PF00248.21	gi|336254020|ref|YP_004597127.1|	-	2e-74	250.5	0.0	2.3e-74	250.2	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Terminase_1	PF03354.15	gi|336254020|ref|YP_004597127.1|	-	0.014	13.9	0.0	0.021	13.4	0.0	1.1	1	0	0	1	1	1	0	Phage	Terminase
UbiA	PF01040.18	gi|336254023|ref|YP_004597130.1|	-	1.6e-56	191.5	26.8	1.6e-56	191.5	26.8	3.0	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|336254023|ref|YP_004597130.1|	-	3.8e-08	32.8	14.5	4.8e-06	25.9	7.8	3.6	3	1	1	4	4	4	2	Cytochrome	oxidase	assembly	protein
Hexapep_2	PF14602.6	gi|336254023|ref|YP_004597130.1|	-	0.05	13.4	1.3	0.23	11.3	0.4	2.4	2	0	0	2	2	2	0	Hexapeptide	repeat	of	succinyl-transferase
DUF3267	PF11667.8	gi|336254025|ref|YP_004597132.1|	-	2.3e-25	89.0	1.7	2.3e-25	89.0	1.7	2.5	2	0	0	2	2	2	1	Putative	zincin	peptidase
PadR	PF03551.14	gi|336254026|ref|YP_004597133.1|	-	2.8e-07	30.4	0.0	4.1e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|336254026|ref|YP_004597133.1|	-	0.0015	18.4	0.0	0.0027	17.5	0.0	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|336254026|ref|YP_004597133.1|	-	0.0085	15.8	0.0	0.021	14.6	0.0	1.5	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4364)
HTH_20	PF12840.7	gi|336254026|ref|YP_004597133.1|	-	0.017	15.2	0.0	0.026	14.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Mrr_N	PF14338.6	gi|336254026|ref|YP_004597133.1|	-	0.019	15.1	0.1	0.95	9.6	0.0	2.2	1	1	1	2	2	2	0	Mrr	N-terminal	domain
TrmB	PF01978.19	gi|336254026|ref|YP_004597133.1|	-	0.05	13.5	0.0	0.066	13.1	0.0	1.4	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HicA_toxin	PF07927.12	gi|336254026|ref|YP_004597133.1|	-	0.067	13.2	0.0	0.17	11.9	0.0	1.6	2	0	0	2	2	2	0	HicA	toxin	of	bacterial	toxin-antitoxin,
HTH_34	PF13601.6	gi|336254026|ref|YP_004597133.1|	-	0.15	12.2	0.0	0.3	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Acyl-CoA_dh_1	PF00441.24	gi|336254027|ref|YP_004597134.1|	-	3e-48	163.8	0.7	4.3e-48	163.3	0.7	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|336254027|ref|YP_004597134.1|	-	2.6e-38	131.2	0.1	6.3e-38	129.9	0.0	1.7	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|336254027|ref|YP_004597134.1|	-	1.3e-25	90.2	0.3	2e-25	89.6	0.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|336254027|ref|YP_004597134.1|	-	1.3e-24	86.2	0.0	2.7e-24	85.2	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
AMP-binding	PF00501.28	gi|336254028|ref|YP_004597135.1|	-	3.6e-90	302.6	0.0	4.3e-90	302.3	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336254028|ref|YP_004597135.1|	-	1.6e-23	83.4	0.1	3.1e-23	82.5	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
NAD_binding_10	PF13460.6	gi|336254029|ref|YP_004597136.1|	-	2.8e-47	161.0	0.1	3.4e-47	160.7	0.1	1.1	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|336254029|ref|YP_004597136.1|	-	1.6e-16	60.6	0.0	2.2e-16	60.1	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.21	gi|336254029|ref|YP_004597136.1|	-	4e-10	39.6	0.0	7.2e-10	38.7	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336254029|ref|YP_004597136.1|	-	7.5e-07	28.4	0.0	1e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.18	gi|336254029|ref|YP_004597136.1|	-	0.00023	21.4	0.1	0.0059	16.9	0.0	2.5	2	1	0	2	2	2	1	TrkA-N	domain
KR	PF08659.10	gi|336254029|ref|YP_004597136.1|	-	0.007	16.3	0.0	1.3	8.9	0.0	2.5	1	1	1	2	2	2	2	KR	domain
Polysacc_synt_2	PF02719.15	gi|336254029|ref|YP_004597136.1|	-	0.044	12.9	0.0	0.25	10.5	0.0	2.1	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|336254029|ref|YP_004597136.1|	-	0.14	11.2	0.1	0.23	10.5	0.1	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|336254029|ref|YP_004597136.1|	-	0.16	11.1	0.0	0.22	10.7	0.0	1.2	1	0	0	1	1	1	0	Male	sterility	protein
SQS_PSY	PF00494.19	gi|336254030|ref|YP_004597137.1|	-	6.3e-54	183.2	2.1	7.7e-54	182.9	2.1	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
UPF0149	PF03695.13	gi|336254030|ref|YP_004597137.1|	-	0.0096	16.2	0.7	0.071	13.4	0.0	2.4	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0149)
Myco_19_kDa	PF05481.12	gi|336254031|ref|YP_004597138.1|	-	0.076	13.3	0.6	0.45	10.8	0.1	2.1	2	0	0	2	2	2	0	Mycobacterium	19	kDa	lipoprotein	antigen
Aminotran_1_2	PF00155.21	gi|336254032|ref|YP_004597139.1|	-	6.3e-68	229.6	0.0	7.2e-68	229.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|336254032|ref|YP_004597139.1|	-	2.2e-12	46.6	0.0	7.1e-11	41.7	0.0	2.1	2	0	0	2	2	2	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|336254032|ref|YP_004597139.1|	-	1.5e-08	34.4	0.4	2.5e-08	33.6	0.4	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|336254032|ref|YP_004597139.1|	-	3.4e-05	22.5	0.0	6.5e-05	21.6	0.0	1.5	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
CPT	PF07931.12	gi|336254032|ref|YP_004597139.1|	-	0.0025	17.7	0.2	0.29	10.9	0.1	2.5	1	1	1	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
Beta_elim_lyase	PF01212.21	gi|336254032|ref|YP_004597139.1|	-	0.0045	16.3	0.0	0.0079	15.5	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_MocR	PF12897.7	gi|336254032|ref|YP_004597139.1|	-	0.019	13.8	0.0	0.047	12.5	0.0	1.7	1	1	0	1	1	1	0	Alanine-glyoxylate	amino-transferase
3HCDH_N	PF02737.18	gi|336254033|ref|YP_004597140.1|	-	7.6e-60	201.9	0.0	9.3e-60	201.6	0.0	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|336254033|ref|YP_004597140.1|	-	3.5e-32	110.9	0.0	1.1e-31	109.3	0.0	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|336254033|ref|YP_004597140.1|	-	0.00037	20.7	0.3	0.00081	19.6	0.2	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|336254033|ref|YP_004597140.1|	-	0.00099	19.1	0.0	0.0015	18.5	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.17	gi|336254033|ref|YP_004597140.1|	-	0.0057	17.2	1.8	0.032	14.8	0.7	2.5	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|336254033|ref|YP_004597140.1|	-	0.091	12.1	0.1	0.16	11.3	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336254033|ref|YP_004597140.1|	-	0.11	12.1	0.2	0.55	9.8	0.1	2.0	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lipase_GDSL_3	PF14606.6	gi|336254034|ref|YP_004597141.1|	-	8.7e-25	87.9	0.0	1.1e-24	87.5	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|336254034|ref|YP_004597141.1|	-	4.1e-08	33.8	0.1	6e-08	33.3	0.1	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
GxDLY	PF14607.6	gi|336254034|ref|YP_004597141.1|	-	0.075	12.8	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	N-terminus	of	Esterase_SGNH_hydro-type
HHH_5	PF14520.6	gi|336254035|ref|YP_004597142.1|	-	0.028	15.0	0.1	0.1	13.2	0.1	1.9	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|336254035|ref|YP_004597142.1|	-	0.04	14.1	0.0	0.071	13.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
DNA_pol_lambd_f	PF10391.9	gi|336254035|ref|YP_004597142.1|	-	0.096	12.5	0.0	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
DUF3306	PF11748.8	gi|336254035|ref|YP_004597142.1|	-	0.47	11.3	4.0	0.16	12.8	0.9	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3306)
DeoC	PF01791.9	gi|336254036|ref|YP_004597143.1|	-	1e-41	143.1	0.0	1.2e-41	142.9	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
FBPase	PF00316.20	gi|336254037|ref|YP_004597144.1|	-	5.3e-28	97.8	0.1	8e-28	97.2	0.1	1.2	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
Inositol_P	PF00459.25	gi|336254037|ref|YP_004597144.1|	-	0.0054	16.3	0.0	0.0075	15.8	0.0	1.2	1	0	0	1	1	1	1	Inositol	monophosphatase	family
Carboxyl_trans	PF01039.22	gi|336254040|ref|YP_004597147.1|	-	5.3e-130	434.4	0.0	6.5e-130	434.1	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
Acetyltransf_3	PF13302.7	gi|336254042|ref|YP_004597149.1|	-	1e-17	65.1	0.1	1.3e-17	64.8	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336254042|ref|YP_004597149.1|	-	0.00013	22.2	0.1	0.00018	21.7	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
bPH_2	PF03703.14	gi|336254043|ref|YP_004597150.1|	-	2.7e-13	49.9	0.1	4.1e-13	49.3	0.1	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
bPH_2	PF03703.14	gi|336254044|ref|YP_004597151.1|	-	1.2e-16	60.6	0.0	2.1e-16	59.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
MaoC_dehydratas	PF01575.19	gi|336254045|ref|YP_004597152.1|	-	1.6e-25	89.0	0.1	2.2e-25	88.6	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|336254045|ref|YP_004597152.1|	-	2.9e-05	24.2	0.2	0.00014	22.0	0.2	1.8	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Sm_multidrug_ex	PF06695.11	gi|336254046|ref|YP_004597153.1|	-	5.8e-10	39.8	1.6	9.6e-10	39.1	0.9	1.7	1	1	1	2	2	2	1	Putative	small	multi-drug	export	protein
Aldedh	PF00171.22	gi|336254047|ref|YP_004597154.1|	-	1.1e-141	472.5	0.0	1.2e-141	472.4	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|336254047|ref|YP_004597154.1|	-	0.018	14.1	0.0	0.029	13.4	0.0	1.2	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
ELFV_dehydrog	PF00208.21	gi|336254048|ref|YP_004597155.1|	-	2.6e-70	236.9	0.0	3.7e-70	236.4	0.0	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|336254048|ref|YP_004597155.1|	-	1.2e-54	183.6	0.0	2.2e-54	182.8	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|336254048|ref|YP_004597155.1|	-	0.0079	15.6	0.0	0.014	14.8	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Bac_GDH	PF05088.12	gi|336254048|ref|YP_004597155.1|	-	0.014	12.9	0.0	0.027	12.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
Cdc6_C	PF09079.11	gi|336254049|ref|YP_004597156.1|	-	1.1e-15	57.3	0.1	2.9e-15	56.0	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336254049|ref|YP_004597156.1|	-	1.1e-12	48.4	0.0	2.6e-12	47.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336254049|ref|YP_004597156.1|	-	2e-11	44.6	0.2	6.3e-11	43.0	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|336254049|ref|YP_004597156.1|	-	2.9e-07	30.6	0.0	4.7e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|336254049|ref|YP_004597156.1|	-	4.4e-07	30.4	0.0	1.2e-06	28.9	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|336254049|ref|YP_004597156.1|	-	2.4e-06	27.1	0.0	4.4e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA_5	PF07728.14	gi|336254049|ref|YP_004597156.1|	-	5.6e-06	26.4	0.0	1.5e-05	25.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|336254049|ref|YP_004597156.1|	-	4e-05	22.9	0.0	0.00011	21.5	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|336254049|ref|YP_004597156.1|	-	0.00013	21.7	0.0	0.00029	20.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|336254049|ref|YP_004597156.1|	-	0.0014	18.6	0.0	0.0036	17.3	0.0	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_32	PF13654.6	gi|336254049|ref|YP_004597156.1|	-	0.0022	16.9	1.0	0.15	10.8	0.7	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|336254049|ref|YP_004597156.1|	-	0.0027	17.9	0.0	0.0053	16.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
DUF2791	PF10923.8	gi|336254049|ref|YP_004597156.1|	-	0.0058	15.5	0.0	0.014	14.2	0.0	1.6	1	1	1	2	2	2	1	P-loop	Domain	of	unknown	function	(DUF2791)
NB-ARC	PF00931.22	gi|336254049|ref|YP_004597156.1|	-	0.0069	15.6	0.0	0.011	14.9	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
PhoH	PF02562.16	gi|336254049|ref|YP_004597156.1|	-	0.012	15.1	0.1	0.92	8.9	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_7	PF12775.7	gi|336254049|ref|YP_004597156.1|	-	0.04	13.4	0.0	0.072	12.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DUF2075	PF09848.9	gi|336254049|ref|YP_004597156.1|	-	0.052	12.8	0.0	0.072	12.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.22	gi|336254049|ref|YP_004597156.1|	-	0.081	13.3	0.0	0.26	11.7	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
ABC_tran	PF00005.27	gi|336254049|ref|YP_004597156.1|	-	0.1	13.1	0.1	0.37	11.3	0.1	2.1	1	1	0	1	1	1	0	ABC	transporter
AAA_33	PF13671.6	gi|336254049|ref|YP_004597156.1|	-	1.5	9.0	3.5	20	5.3	0.1	2.9	2	1	1	3	3	3	0	AAA	domain
HpcH_HpaI	PF03328.14	gi|336254050|ref|YP_004597157.1|	-	1.1e-52	178.3	5.4	2.4e-52	177.3	5.4	1.5	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|336254050|ref|YP_004597157.1|	-	1.5e-10	40.8	0.0	5.4e-05	22.5	0.0	2.3	1	1	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
ELFV_dehydrog	PF00208.21	gi|336254051|ref|YP_004597158.1|	-	3.5e-74	249.6	0.4	5e-74	249.1	0.4	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|336254051|ref|YP_004597158.1|	-	3.8e-53	178.8	0.0	6.4e-53	178.1	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
Oxidored_nitro	PF00148.19	gi|336254051|ref|YP_004597158.1|	-	0.0022	16.8	0.1	0.0034	16.2	0.1	1.2	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|336254051|ref|YP_004597158.1|	-	0.0027	17.1	0.1	0.008	15.6	0.1	1.8	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HCV_NS5a_C	PF12941.7	gi|336254051|ref|YP_004597158.1|	-	0.016	15.1	0.3	4.7	7.0	0.0	2.2	2	0	0	2	2	2	0	HCV	NS5a	protein	C-terminal	region
ABC_membrane	PF00664.23	gi|336254052|ref|YP_004597159.1|	-	3.9e-40	138.2	0.8	4.8e-40	137.9	0.8	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|336254052|ref|YP_004597159.1|	-	1.4e-28	100.1	0.0	2.5e-28	99.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|336254052|ref|YP_004597159.1|	-	3.5e-05	23.3	0.0	0.0002	20.9	0.0	1.9	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336254052|ref|YP_004597159.1|	-	0.013	15.2	0.2	0.028	14.2	0.2	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF3584	PF12128.8	gi|336254052|ref|YP_004597159.1|	-	0.015	12.9	0.0	0.023	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
RsgA_GTPase	PF03193.16	gi|336254052|ref|YP_004597159.1|	-	0.043	13.7	0.0	0.13	12.2	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
AAA_18	PF13238.6	gi|336254052|ref|YP_004597159.1|	-	0.052	14.1	0.0	0.14	12.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|336254052|ref|YP_004597159.1|	-	0.11	12.8	1.6	0.71	10.2	1.6	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF2062	PF09835.9	gi|336254053|ref|YP_004597160.1|	-	5.4e-21	75.0	2.4	6.1e-21	74.8	2.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
RIC3	PF15361.6	gi|336254053|ref|YP_004597160.1|	-	0.1	13.0	0.0	0.15	12.5	0.0	1.2	1	0	0	1	1	1	0	Resistance	to	inhibitors	of	cholinesterase	homologue	3
DUF2207	PF09972.9	gi|336254053|ref|YP_004597160.1|	-	0.18	10.5	0.1	0.24	10.1	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Sec61_beta	PF03911.16	gi|336254053|ref|YP_004597160.1|	-	3.2	7.8	5.4	16	5.6	1.0	2.8	3	0	0	3	3	3	0	Sec61beta	family
HupF_HypC	PF01455.18	gi|336254054|ref|YP_004597161.1|	-	0.0064	16.6	0.2	0.014	15.6	0.2	1.6	1	0	0	1	1	1	1	HupF/HypC	family
DNA_pol_B_N	PF18094.1	gi|336254054|ref|YP_004597161.1|	-	0.034	14.7	0.0	0.074	13.6	0.0	1.6	1	0	0	1	1	1	0	DNA	polymerase	beta	N-terminal	domain
Acyl-CoA_dh_1	PF00441.24	gi|336254055|ref|YP_004597162.1|	-	2.2e-47	161.0	0.4	3.2e-47	160.5	0.4	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|336254055|ref|YP_004597162.1|	-	2.6e-38	131.1	0.2	5.8e-38	130.0	0.1	1.7	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|336254055|ref|YP_004597162.1|	-	4.3e-25	87.8	0.0	6.7e-25	87.1	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|336254055|ref|YP_004597162.1|	-	3.1e-15	56.6	0.9	4.9e-15	56.0	0.9	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
RIO1	PF01163.22	gi|336254057|ref|YP_004597164.1|	-	5e-10	39.3	0.0	7.4e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|336254057|ref|YP_004597164.1|	-	8.2e-09	35.7	0.3	0.0025	17.8	0.3	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|336254057|ref|YP_004597164.1|	-	5.5e-06	25.9	0.0	1.1e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|336254057|ref|YP_004597164.1|	-	0.00026	20.4	0.0	0.00036	20.0	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
APH_6_hur	PF04655.14	gi|336254057|ref|YP_004597164.1|	-	0.015	14.7	0.0	0.02	14.3	0.0	1.3	1	0	0	1	1	1	0	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
Kinase-PolyVal	PF18762.1	gi|336254057|ref|YP_004597164.1|	-	0.038	13.9	0.0	0.058	13.4	0.0	1.2	1	0	0	1	1	1	0	Serine/Threonine/Tyrosine	Kinase	found	in	polyvalent	proteins
WaaY	PF06176.11	gi|336254057|ref|YP_004597164.1|	-	0.12	12.0	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Fructosamin_kin	PF03881.14	gi|336254057|ref|YP_004597164.1|	-	0.14	11.3	0.0	3.7	6.6	0.0	2.4	2	1	1	3	3	3	0	Fructosamine	kinase
Aldedh	PF00171.22	gi|336254058|ref|YP_004597165.1|	-	1.3e-143	478.9	0.0	1.5e-143	478.7	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OmdA	PF13376.6	gi|336254058|ref|YP_004597165.1|	-	0.026	14.5	0.9	0.054	13.5	0.9	1.4	1	0	0	1	1	1	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
SPOUT_MTase_2	PF14419.6	gi|336254058|ref|YP_004597165.1|	-	0.034	13.5	0.0	0.15	11.4	0.0	1.9	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
LuxC	PF05893.14	gi|336254058|ref|YP_004597165.1|	-	0.15	11.1	0.0	0.3	10.1	0.0	1.5	1	1	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
CN_hydrolase	PF00795.22	gi|336254059|ref|YP_004597166.1|	-	5.6e-50	170.1	0.0	6.4e-50	169.9	0.0	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
DUF3875	PF12991.7	gi|336254059|ref|YP_004597166.1|	-	0.05	13.6	0.0	2.1	8.4	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3875)
Polyketide_cyc2	PF10604.9	gi|336254060|ref|YP_004597167.1|	-	1.5e-17	64.2	1.7	1.7e-17	64.0	1.7	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.13	gi|336254060|ref|YP_004597167.1|	-	1.7e-06	27.9	0.0	2.2e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc	PF03364.20	gi|336254060|ref|YP_004597167.1|	-	0.00016	21.9	0.2	0.00021	21.5	0.2	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|336254060|ref|YP_004597167.1|	-	0.083	13.1	0.5	0.42	10.8	0.5	2.0	1	1	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
FaeA	PF04703.12	gi|336254061|ref|YP_004597168.1|	-	0.0038	17.6	0.0	0.005	17.2	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
Put_DNA-bind_N	PF06971.13	gi|336254061|ref|YP_004597168.1|	-	0.0076	16.2	0.0	0.013	15.5	0.0	1.3	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
z-alpha	PF02295.17	gi|336254061|ref|YP_004597168.1|	-	0.08	13.0	0.0	0.13	12.3	0.0	1.4	1	1	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
HTH_AsnC-type	PF13404.6	gi|336254061|ref|YP_004597168.1|	-	0.097	12.5	0.1	0.38	10.6	0.1	2.0	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF3767	PF12597.8	gi|336254062|ref|YP_004597169.1|	-	1.6	8.6	3.5	2	8.3	3.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3767)
PhoU	PF01895.19	gi|336254063|ref|YP_004597170.1|	-	3.1e-15	56.4	2.7	2.8e-11	43.7	0.0	2.6	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|336254063|ref|YP_004597170.1|	-	9e-07	28.7	0.0	2e-06	27.6	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
NAD_kinase	PF01513.21	gi|336254064|ref|YP_004597171.1|	-	2.5e-41	141.8	1.7	7.2e-41	140.3	1.7	1.6	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|336254064|ref|YP_004597171.1|	-	4.1e-06	26.4	0.7	1e-05	25.1	0.1	2.0	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
MoCF_biosynth	PF00994.24	gi|336254066|ref|YP_004597173.1|	-	7.2e-38	129.5	0.1	1.2e-37	128.8	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HTH_15	PF12324.8	gi|336254066|ref|YP_004597173.1|	-	0.024	14.6	0.3	0.096	12.6	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_20	PF12840.7	gi|336254067|ref|YP_004597174.1|	-	5.2e-07	29.6	0.1	1.1e-06	28.5	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336254067|ref|YP_004597174.1|	-	0.00022	21.1	0.0	0.00042	20.1	0.0	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|336254067|ref|YP_004597174.1|	-	0.00042	19.8	0.0	0.00097	18.7	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
RP-C	PF03428.13	gi|336254067|ref|YP_004597174.1|	-	0.003	17.2	0.0	0.0055	16.4	0.0	1.4	1	1	0	1	1	1	1	Replication	protein	C	N-terminal	domain
PadR	PF03551.14	gi|336254067|ref|YP_004597174.1|	-	0.066	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
PTPS	PF01242.19	gi|336254068|ref|YP_004597175.1|	-	6.8e-23	81.0	0.0	1e-22	80.4	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
GYD	PF08734.11	gi|336254068|ref|YP_004597175.1|	-	0.12	12.4	0.1	0.19	11.7	0.1	1.4	1	0	0	1	1	1	0	GYD	domain
HHH_7	PF14635.6	gi|336254068|ref|YP_004597175.1|	-	0.13	12.6	0.1	0.19	12.1	0.1	1.2	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Radical_SAM	PF04055.21	gi|336254069|ref|YP_004597176.1|	-	9.1e-27	94.5	0.6	1.7e-26	93.6	0.6	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|336254069|ref|YP_004597176.1|	-	4e-15	56.0	0.0	6.3e-15	55.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|336254069|ref|YP_004597176.1|	-	1.2e-11	45.0	0.0	1.8e-11	44.4	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TP_methylase	PF00590.20	gi|336254069|ref|YP_004597176.1|	-	0.075	13.0	0.1	0.37	10.7	0.0	1.9	2	0	0	2	2	2	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Pho86	PF11124.8	gi|336254069|ref|YP_004597176.1|	-	0.25	10.8	0.0	0.34	10.3	0.0	1.1	1	0	0	1	1	1	0	Inorganic	phosphate	transporter	Pho86
QueC	PF06508.13	gi|336254070|ref|YP_004597177.1|	-	5.9e-74	248.1	0.0	6.8e-74	247.9	0.0	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|336254070|ref|YP_004597177.1|	-	5.3e-07	29.4	0.0	1.4e-06	28.1	0.0	1.7	2	1	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|336254070|ref|YP_004597177.1|	-	0.00016	20.6	0.0	0.00021	20.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|336254070|ref|YP_004597177.1|	-	0.022	13.9	0.0	0.038	13.1	0.0	1.4	1	1	0	1	1	1	0	NAD	synthase
Asn_synthase	PF00733.21	gi|336254070|ref|YP_004597177.1|	-	0.026	14.2	0.2	0.037	13.7	0.2	1.2	1	0	0	1	1	1	0	Asparagine	synthase
ADH_zinc_N	PF00107.26	gi|336254072|ref|YP_004597179.1|	-	1e-22	80.5	0.1	2.3e-22	79.4	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|336254072|ref|YP_004597179.1|	-	1.1e-22	81.5	0.5	2e-22	80.7	0.2	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|336254072|ref|YP_004597179.1|	-	1.4e-06	28.1	0.4	4.3e-06	26.6	0.0	2.0	2	1	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
adh_short	PF00106.25	gi|336254072|ref|YP_004597179.1|	-	0.073	12.5	0.2	0.14	11.6	0.2	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
ADH_N_2	PF16884.5	gi|336254072|ref|YP_004597179.1|	-	0.084	12.8	0.1	0.21	11.5	0.1	1.6	1	1	0	1	1	1	0	N-terminal	domain	of	oxidoreductase
Fe-ADH	PF00465.19	gi|336254074|ref|YP_004597181.1|	-	4.6e-61	206.6	3.4	5.7e-61	206.3	3.4	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|336254074|ref|YP_004597181.1|	-	6.9e-10	39.1	0.3	8e-07	29.0	0.0	2.2	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
AAA_12	PF13087.6	gi|336254075|ref|YP_004597182.1|	-	1.4e-46	158.6	0.0	1.3e-45	155.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|336254075|ref|YP_004597182.1|	-	8.6e-34	117.5	0.3	1.3e-15	58.0	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|336254075|ref|YP_004597182.1|	-	7.5e-15	55.1	0.1	2.1e-14	53.7	0.1	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|336254075|ref|YP_004597182.1|	-	1.5e-09	38.3	0.0	3.4e-09	37.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.18	gi|336254075|ref|YP_004597182.1|	-	1.5e-08	34.7	0.0	0.0005	19.9	0.0	3.2	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
AAA_22	PF13401.6	gi|336254075|ref|YP_004597182.1|	-	0.00028	21.1	0.2	0.03	14.6	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|336254075|ref|YP_004597182.1|	-	0.001	18.8	0.0	0.0027	17.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|336254075|ref|YP_004597182.1|	-	0.0046	16.3	0.0	0.012	14.8	0.0	1.8	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_16	PF13191.6	gi|336254075|ref|YP_004597182.1|	-	0.0059	17.0	0.2	0.069	13.5	0.0	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
ResIII	PF04851.15	gi|336254075|ref|YP_004597182.1|	-	0.0061	16.6	0.0	0.022	14.7	0.0	1.9	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_RecD	PF05127.14	gi|336254075|ref|YP_004597182.1|	-	0.0065	16.3	0.0	0.014	15.2	0.0	1.6	1	0	0	1	1	1	1	Helicase
UvrD-helicase	PF00580.21	gi|336254075|ref|YP_004597182.1|	-	0.015	14.8	0.0	0.032	13.7	0.0	1.5	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
AAA	PF00004.29	gi|336254075|ref|YP_004597182.1|	-	0.022	15.2	2.6	0.2	12.1	0.1	3.1	3	1	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
UvrD_C_2	PF13538.6	gi|336254075|ref|YP_004597182.1|	-	0.034	14.0	0.2	0.22	11.4	0.2	2.3	1	1	0	1	1	1	0	UvrD-like	helicase	C-terminal	domain
PhoH	PF02562.16	gi|336254075|ref|YP_004597182.1|	-	0.2	11.1	0.0	2.5	7.5	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
tRNA_anti-codon	PF01336.25	gi|336254076|ref|YP_004597183.1|	-	0.00015	21.7	8.3	0.13	12.2	0.1	4.3	4	0	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
DUF4777	PF16007.5	gi|336254077|ref|YP_004597184.1|	-	0.14	12.5	0.0	0.44	10.8	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4777)
Metallophos_2	PF12850.7	gi|336254078|ref|YP_004597185.1|	-	1.9e-07	31.4	0.0	3e-07	30.8	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336254078|ref|YP_004597185.1|	-	1e-05	26.1	0.5	7.7e-05	23.3	0.0	2.0	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
Oxidored_molyb	PF00174.19	gi|336254079|ref|YP_004597186.1|	-	1.5e-10	40.9	0.0	5.3e-10	39.2	0.0	1.7	1	1	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
DUF3910	PF13049.6	gi|336254080|ref|YP_004597187.1|	-	0.11	12.8	0.1	0.18	12.1	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3910)
SNF	PF00209.18	gi|336254081|ref|YP_004597188.1|	-	7.2e-57	193.2	35.3	3.9e-31	108.4	18.4	2.0	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
Carboxyl_trans	PF01039.22	gi|336254082|ref|YP_004597189.1|	-	1.3e-197	657.4	0.0	1.4e-197	657.2	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|336254082|ref|YP_004597189.1|	-	4.5e-05	23.1	0.0	0.0001	21.9	0.0	1.5	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
BIV_Env	PF05858.12	gi|336254082|ref|YP_004597189.1|	-	0.39	8.9	1.0	0.52	8.4	1.0	1.1	1	0	0	1	1	1	0	Bovine	immunodeficiency	virus	surface	protein	(SU)
Methyltransf_25	PF13649.6	gi|336254084|ref|YP_004597191.1|	-	1.7e-10	41.5	0.0	5.8e-10	39.7	0.0	1.9	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254084|ref|YP_004597191.1|	-	1.1e-09	38.8	0.1	8.1e-09	36.0	0.0	2.4	3	1	0	3	3	3	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336254084|ref|YP_004597191.1|	-	1.2e-05	26.0	0.0	2.4e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|336254084|ref|YP_004597191.1|	-	7.9e-05	21.8	0.0	0.00011	21.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_2	PF00891.18	gi|336254084|ref|YP_004597191.1|	-	0.019	14.3	0.0	0.023	14.0	0.0	1.1	1	0	0	1	1	1	0	O-methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336254084|ref|YP_004597191.1|	-	0.13	11.8	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
CPSase_L_D2	PF02786.17	gi|336254085|ref|YP_004597192.1|	-	2.7e-72	242.7	0.1	1.2e-71	240.6	0.1	2.0	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|336254085|ref|YP_004597192.1|	-	3e-45	153.3	0.8	7e-45	152.1	0.5	1.8	2	0	0	2	2	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|336254085|ref|YP_004597192.1|	-	1.1e-34	118.7	0.0	2.2e-34	117.8	0.0	1.5	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.22	gi|336254085|ref|YP_004597192.1|	-	7.1e-16	57.8	7.3	2.1e-15	56.3	7.3	1.8	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|336254085|ref|YP_004597192.1|	-	1e-07	31.6	3.4	0.0012	18.7	0.4	2.7	1	1	1	2	2	2	2	Biotin-lipoyl	like
ATP-grasp	PF02222.22	gi|336254085|ref|YP_004597192.1|	-	2.4e-06	27.3	0.0	4.7e-06	26.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|336254085|ref|YP_004597192.1|	-	4.6e-06	26.3	0.0	1.1e-05	25.0	0.0	1.6	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
GARS_A	PF01071.19	gi|336254085|ref|YP_004597192.1|	-	5.4e-05	23.0	0.0	0.00011	22.1	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
HlyD_3	PF13437.6	gi|336254085|ref|YP_004597192.1|	-	0.0089	16.7	1.8	5.1	7.8	0.1	2.8	2	0	0	2	2	2	2	HlyD	family	secretion	protein
HlyD_D23	PF16576.5	gi|336254085|ref|YP_004597192.1|	-	0.029	13.6	0.7	1.6	7.9	0.1	2.4	1	1	1	2	2	2	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
RnfC_N	PF13375.6	gi|336254085|ref|YP_004597192.1|	-	0.035	14.0	0.8	0.12	12.3	0.4	2.1	2	0	0	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
GCV_H	PF01597.19	gi|336254085|ref|YP_004597192.1|	-	0.044	13.7	2.3	0.12	12.2	1.6	2.0	2	0	0	2	2	2	0	Glycine	cleavage	H-protein
Radical_SAM	PF04055.21	gi|336254086|ref|YP_004597193.1|	-	9.8e-21	74.8	0.0	1.5e-20	74.2	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|336254086|ref|YP_004597193.1|	-	2.9e-05	24.4	0.0	4.4e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|336254086|ref|YP_004597193.1|	-	0.00022	21.6	0.0	0.00056	20.4	0.0	1.7	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|336254086|ref|YP_004597193.1|	-	0.0013	18.9	0.0	0.0019	18.3	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TP_methylase	PF00590.20	gi|336254086|ref|YP_004597193.1|	-	0.019	14.9	0.1	0.035	14.0	0.1	1.6	1	1	0	1	1	1	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF1906	PF08924.11	gi|336254086|ref|YP_004597193.1|	-	0.057	13.6	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1906)
PaaB	PF06243.11	gi|336254087|ref|YP_004597194.1|	-	1.5e-08	34.8	0.0	1.9e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
Pilin_N	PF07790.11	gi|336254088|ref|YP_004597195.1|	-	1.2e-17	64.6	0.5	1.9e-17	64.0	0.5	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
DUF4443	PF14544.6	gi|336254089|ref|YP_004597196.1|	-	0.14	12.4	0.1	0.18	12.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4443)
ThiS	PF02597.20	gi|336254090|ref|YP_004597197.1|	-	6.1e-06	26.8	0.1	5.3e-05	23.8	0.1	2.1	1	1	0	1	1	1	1	ThiS	family
Sugarporin_N	PF11471.8	gi|336254091|ref|YP_004597198.1|	-	2	8.5	7.5	0.086	12.8	0.8	2.3	2	0	0	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
DUF4519	PF15012.6	gi|336254093|ref|YP_004597200.1|	-	0.75	10.0	4.0	1.1	9.5	4.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4519)
OppC_N	PF12911.7	gi|336254093|ref|YP_004597200.1|	-	0.85	9.6	3.8	0.94	9.5	3.8	1.1	1	0	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
HD	PF01966.22	gi|336254094|ref|YP_004597201.1|	-	3.6e-12	46.6	1.7	8.6e-12	45.4	1.7	1.7	1	0	0	1	1	1	1	HD	domain
DNA_ligase_A_M	PF01068.21	gi|336254095|ref|YP_004597202.1|	-	3e-46	157.6	0.0	5.8e-46	156.7	0.0	1.5	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|336254095|ref|YP_004597202.1|	-	3.7e-39	134.8	0.0	8e-38	130.5	0.0	2.3	1	1	1	2	2	2	2	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|336254095|ref|YP_004597202.1|	-	6.2e-18	65.2	0.0	1.8e-17	63.7	0.0	1.8	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
mRNA_cap_enzyme	PF01331.19	gi|336254095|ref|YP_004597202.1|	-	0.031	14.1	0.0	4.8	7.0	0.0	2.2	2	0	0	2	2	2	0	mRNA	capping	enzyme,	catalytic	domain
GCS	PF03074.16	gi|336254096|ref|YP_004597203.1|	-	0.1	12.0	0.1	0.92	8.8	0.0	2.1	2	0	0	2	2	2	0	Glutamate-cysteine	ligase
UPF0052	PF01933.18	gi|336254097|ref|YP_004597204.1|	-	1e-45	156.3	0.0	1.3e-45	156.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
Dus	PF01207.17	gi|336254098|ref|YP_004597205.1|	-	8.2e-09	35.0	0.4	5.1e-08	32.4	0.4	1.8	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|336254098|ref|YP_004597205.1|	-	0.0014	18.1	0.0	0.0025	17.3	0.0	1.5	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
Radical_SAM	PF04055.21	gi|336254098|ref|YP_004597205.1|	-	0.0071	16.7	0.2	0.085	13.2	0.1	2.4	1	1	1	2	2	2	1	Radical	SAM	superfamily
NmrA	PF05368.13	gi|336254098|ref|YP_004597205.1|	-	0.01	15.4	0.5	0.075	12.6	0.4	1.9	2	0	0	2	2	2	0	NmrA-like	family
DUF1633	PF07794.11	gi|336254098|ref|YP_004597205.1|	-	0.023	12.9	2.3	0.028	12.6	2.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1633)
IGPS	PF00218.21	gi|336254098|ref|YP_004597205.1|	-	0.17	11.0	0.0	0.52	9.4	0.0	1.9	2	1	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
SpoIIAA-like	PF11964.8	gi|336254099|ref|YP_004597206.1|	-	0.098	13.7	0.1	0.14	13.2	0.1	1.4	1	1	0	1	1	1	0	SpoIIAA-like
SBP_bac_6	PF13343.6	gi|336254099|ref|YP_004597206.1|	-	0.099	12.0	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
DUF3695	PF12494.8	gi|336254100|ref|YP_004597207.1|	-	0.15	12.0	0.5	0.3	11.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3695)
tRNA_anti-codon	PF01336.25	gi|336254102|ref|YP_004597209.1|	-	9.2e-09	35.2	0.1	1.9e-08	34.1	0.1	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DHH	PF01368.20	gi|336254102|ref|YP_004597209.1|	-	0.0021	18.3	0.3	0.0039	17.4	0.3	1.4	1	0	0	1	1	1	1	DHH	family
tRNA_anti_2	PF13742.6	gi|336254102|ref|YP_004597209.1|	-	0.0051	17.0	0.0	0.011	16.0	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|336254102|ref|YP_004597209.1|	-	0.013	15.8	1.5	0.026	14.9	0.1	2.2	2	0	0	2	2	2	0	S1	RNA	binding	domain
Rib_5-P_isom_A	PF06026.14	gi|336254102|ref|YP_004597209.1|	-	0.072	12.7	0.0	0.17	11.5	0.0	1.6	1	0	0	1	1	1	0	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
S1_2	PF13509.6	gi|336254102|ref|YP_004597209.1|	-	0.12	12.5	0.1	0.35	11.0	0.1	1.8	1	0	0	1	1	1	0	S1	domain
Phe_tRNA-synt_N	PF02912.18	gi|336254102|ref|YP_004597209.1|	-	3.6	7.6	5.2	14	5.7	0.1	3.1	3	0	0	3	3	3	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
Usp	PF00582.26	gi|336254103|ref|YP_004597210.1|	-	1.4e-16	61.3	0.7	1.6e-16	61.1	0.7	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
GntP_permease	PF02447.16	gi|336254104|ref|YP_004597211.1|	-	2.4e-95	319.8	33.4	2.8e-95	319.6	33.4	1.0	1	0	0	1	1	1	1	GntP	family	permease
CitMHS	PF03600.16	gi|336254104|ref|YP_004597211.1|	-	1e-14	54.5	38.6	1e-14	54.5	38.6	2.1	1	1	1	2	2	2	1	Citrate	transporter
Na_H_antiport_2	PF13726.6	gi|336254104|ref|YP_004597211.1|	-	0.025	14.7	2.8	0.025	14.7	2.8	3.6	4	1	0	4	4	4	0	Na+-H+	antiporter	family
Pox_A14	PF05767.12	gi|336254104|ref|YP_004597211.1|	-	0.69	10.1	11.4	2.9	8.1	0.0	4.0	4	0	0	4	4	4	0	Poxvirus	virion	envelope	protein	A14
DUF3007	PF11460.8	gi|336254104|ref|YP_004597211.1|	-	1.7	9.0	6.1	0.43	10.9	1.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3007)
Prok-JAB	PF14464.6	gi|336254105|ref|YP_004597212.1|	-	3.1e-09	36.6	0.0	4.4e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.15	gi|336254105|ref|YP_004597212.1|	-	0.02	14.9	0.0	0.034	14.1	0.0	1.4	1	0	0	1	1	1	0	RadC-like	JAB	domain
CTP_transf_like	PF01467.26	gi|336254106|ref|YP_004597213.1|	-	1.9e-17	63.8	0.2	2.2e-17	63.6	0.2	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|336254106|ref|YP_004597213.1|	-	0.08	12.8	0.1	0.15	12.0	0.1	1.5	1	0	0	1	1	1	0	FAD	synthetase
ILVD_EDD	PF00920.21	gi|336254108|ref|YP_004597215.1|	-	6.6e-197	655.2	0.7	7.5e-197	655.0	0.7	1.0	1	0	0	1	1	1	1	Dehydratase	family
DGC	PF08859.11	gi|336254108|ref|YP_004597215.1|	-	0.16	12.1	0.2	1.7	8.8	0.0	2.3	2	0	0	2	2	2	0	DGC	domain
NTP_transf_3	PF12804.7	gi|336254109|ref|YP_004597216.1|	-	1.2e-31	110.2	2.9	1.6e-31	109.8	2.9	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.19	gi|336254109|ref|YP_004597216.1|	-	0.0019	18.2	0.0	0.0088	16.0	0.0	1.9	2	1	1	3	3	3	1	Cytidylyltransferase
CdiA_C_tRNase	PF18664.1	gi|336254109|ref|YP_004597216.1|	-	0.072	13.3	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	CdiA	C-terminal	tRNase	domain
GHMP_kinases_N	PF00288.26	gi|336254111|ref|YP_004597218.1|	-	2.2e-07	31.0	1.1	4.3e-07	30.1	0.4	1.9	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|336254111|ref|YP_004597218.1|	-	1.3e-05	25.5	0.2	2.2e-05	24.7	0.2	1.4	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
ATPase	PF06745.13	gi|336254112|ref|YP_004597219.1|	-	1.6e-06	27.7	0.0	0.0011	18.4	0.1	2.2	2	0	0	2	2	2	2	KaiC
Rad51	PF08423.11	gi|336254112|ref|YP_004597219.1|	-	0.00011	21.5	0.0	0.0076	15.5	0.0	2.3	2	0	0	2	2	2	2	Rad51
AAA_25	PF13481.6	gi|336254112|ref|YP_004597219.1|	-	0.031	13.8	3.0	0.51	9.9	3.0	2.2	1	1	0	1	1	1	0	AAA	domain
Erp_C	PF06780.11	gi|336254113|ref|YP_004597220.1|	-	0.0018	18.3	1.2	0.0032	17.5	1.2	1.4	1	0	0	1	1	1	1	Erp	protein	C-terminus
Syntaxin-6_N	PF09177.11	gi|336254113|ref|YP_004597220.1|	-	0.0029	18.1	1.5	0.019	15.5	1.3	2.4	1	1	1	2	2	2	1	Syntaxin	6,	N-terminal
DUF2746	PF10874.8	gi|336254113|ref|YP_004597220.1|	-	0.0081	16.6	0.9	0.034	14.5	0.2	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2746)
PSD2	PF07624.11	gi|336254113|ref|YP_004597220.1|	-	0.01	15.6	1.8	0.1	12.4	0.3	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1585)
TPR_MLP1_2	PF07926.12	gi|336254113|ref|YP_004597220.1|	-	0.026	14.6	1.4	0.026	14.6	1.4	2.0	2	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
HypA	PF01155.19	gi|336254113|ref|YP_004597220.1|	-	0.035	14.1	0.0	0.067	13.2	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
MAP65_ASE1	PF03999.12	gi|336254113|ref|YP_004597220.1|	-	0.038	12.7	0.5	0.05	12.3	0.5	1.1	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
TackOD1	PF18551.1	gi|336254113|ref|YP_004597220.1|	-	0.042	13.5	0.0	0.066	12.9	0.0	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF713	PF05218.14	gi|336254113|ref|YP_004597220.1|	-	0.05	13.3	0.2	0.08	12.7	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF713)
Zn-ribbon_8	PF09723.10	gi|336254113|ref|YP_004597220.1|	-	0.058	13.5	1.0	0.15	12.2	1.0	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
TolA_bind_tri	PF16331.5	gi|336254113|ref|YP_004597220.1|	-	0.09	12.9	2.9	0.49	10.5	0.4	2.5	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
FlaC_arch	PF05377.11	gi|336254113|ref|YP_004597220.1|	-	0.1	13.0	0.1	4.7	7.7	0.0	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
XPA_N	PF01286.18	gi|336254113|ref|YP_004597220.1|	-	0.12	12.4	0.7	5.6	7.1	0.1	2.5	2	0	0	2	2	2	0	XPA	protein	N-terminal
Spc7	PF08317.11	gi|336254113|ref|YP_004597220.1|	-	0.26	10.2	3.7	0.46	9.3	3.5	1.5	1	1	0	1	1	1	0	Spc7	kinetochore	protein
FUSC	PF04632.12	gi|336254113|ref|YP_004597220.1|	-	0.27	9.7	9.0	0.19	10.2	7.3	1.6	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
PhnA_Zn_Ribbon	PF08274.12	gi|336254113|ref|YP_004597220.1|	-	0.29	11.1	2.8	3.9	7.5	0.4	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Latarcin	PF10279.9	gi|336254113|ref|YP_004597220.1|	-	0.58	10.6	6.3	1.8	9.0	0.2	2.4	2	0	0	2	2	2	0	Latarcin	precursor
DUF4200	PF13863.6	gi|336254113|ref|YP_004597220.1|	-	0.71	10.3	4.4	12	6.4	3.3	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF2205	PF10224.9	gi|336254113|ref|YP_004597220.1|	-	1.4	8.9	3.9	1.5	8.8	0.7	2.4	2	1	1	3	3	3	0	Short	coiled-coil	protein
DinB_2	PF12867.7	gi|336254113|ref|YP_004597220.1|	-	4.2	7.9	9.2	2.7	8.5	0.6	2.6	2	1	1	3	3	2	0	DinB	superfamily
MIF4G_like_2	PF09090.11	gi|336254113|ref|YP_004597220.1|	-	8.3	5.8	8.6	1.3	8.5	3.3	2.2	2	1	0	2	2	2	0	MIF4G	like
TFIIS_C	PF01096.18	gi|336254115|ref|YP_004597222.1|	-	1e-16	60.5	4.0	1e-16	60.5	4.0	3.0	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|336254115|ref|YP_004597222.1|	-	9.3e-08	31.8	8.6	1.1e-07	31.5	1.6	3.0	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|336254115|ref|YP_004597222.1|	-	1.3e-05	24.4	12.5	0.0024	17.2	0.9	3.4	3	0	0	3	3	3	2	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|336254115|ref|YP_004597222.1|	-	3.8e-05	23.5	12.7	0.0026	17.7	3.1	2.6	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|336254115|ref|YP_004597222.1|	-	5.2e-05	23.2	11.1	0.0015	18.5	1.3	2.7	2	1	0	2	2	2	2	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|336254115|ref|YP_004597222.1|	-	0.00039	20.3	12.4	0.0052	16.7	2.2	3.2	3	1	0	3	3	3	2	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.6	gi|336254115|ref|YP_004597222.1|	-	0.0012	18.5	10.0	2.5	8.0	0.1	4.3	4	0	0	4	4	4	1	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336254115|ref|YP_004597222.1|	-	0.0026	17.7	6.5	0.0037	17.2	0.4	2.7	2	1	1	3	3	3	1	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|336254115|ref|YP_004597222.1|	-	0.0031	17.0	16.0	1.5	8.4	0.7	4.3	3	2	0	3	3	3	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|336254115|ref|YP_004597222.1|	-	0.006	16.6	8.8	0.51	10.4	0.8	2.4	1	1	1	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RRN7	PF11781.8	gi|336254115|ref|YP_004597222.1|	-	0.0061	16.2	10.7	0.31	10.8	0.3	4.1	4	0	0	4	4	4	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
ADK_lid	PF05191.14	gi|336254115|ref|YP_004597222.1|	-	0.0097	15.9	12.0	3	7.9	0.3	4.1	4	0	0	4	4	4	1	Adenylate	kinase,	active	site	lid
PhnA_Zn_Ribbon	PF08274.12	gi|336254115|ref|YP_004597222.1|	-	0.022	14.7	10.3	4.4	7.4	0.1	4.1	4	0	0	4	4	4	0	PhnA	Zinc-Ribbon
zinc_ribbon_4	PF13717.6	gi|336254115|ref|YP_004597222.1|	-	0.025	14.5	9.0	0.39	10.7	0.3	3.5	3	1	0	3	3	3	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|336254115|ref|YP_004597222.1|	-	0.03	14.0	6.0	0.37	10.4	1.3	2.2	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
Zn-ribbon_8	PF09723.10	gi|336254115|ref|YP_004597222.1|	-	0.039	14.1	16.4	0.88	9.7	2.9	3.7	2	2	0	3	3	3	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|336254115|ref|YP_004597222.1|	-	0.039	13.9	16.0	0.25	11.3	2.7	4.1	2	2	1	4	4	4	0	Nudix	N-terminal
YhfH	PF14149.6	gi|336254115|ref|YP_004597222.1|	-	0.079	13.0	12.2	18	5.4	0.1	4.2	4	0	0	4	4	4	0	YhfH-like	protein
zf-ACC	PF17848.1	gi|336254115|ref|YP_004597222.1|	-	0.089	12.9	12.9	7.2	6.8	0.3	4.1	3	1	1	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf_UBZ	PF18439.1	gi|336254115|ref|YP_004597222.1|	-	0.091	12.4	14.5	1.1	8.9	0.1	4.1	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
DNA_RNApol_7kD	PF03604.13	gi|336254115|ref|YP_004597222.1|	-	0.11	12.3	12.1	0.39	10.4	0.2	3.7	3	1	1	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Rubredoxin_2	PF18073.1	gi|336254115|ref|YP_004597222.1|	-	0.15	11.8	14.6	8.4	6.2	0.1	4.3	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
zf-piccolo	PF05715.13	gi|336254115|ref|YP_004597222.1|	-	0.22	11.7	9.8	4.8	7.4	0.1	3.7	1	1	2	3	3	3	0	Piccolo	Zn-finger
DUF2318	PF10080.9	gi|336254115|ref|YP_004597222.1|	-	0.28	11.3	9.5	1	9.5	2.1	2.9	1	1	1	3	3	3	0	Predicted	membrane	protein	(DUF2318)
zf-RING_7	PF02591.15	gi|336254115|ref|YP_004597222.1|	-	0.33	11.2	6.0	38	4.6	0.1	4.0	4	0	0	4	4	4	0	C4-type	zinc	ribbon	domain
GATA	PF00320.27	gi|336254115|ref|YP_004597222.1|	-	0.34	10.5	10.6	4.5	7.0	0.2	4.0	3	1	1	4	4	4	0	GATA	zinc	finger
PHD	PF00628.29	gi|336254115|ref|YP_004597222.1|	-	0.67	9.9	11.5	1.6	8.7	1.5	2.5	2	1	0	2	2	2	0	PHD-finger
zinc-ribbons_6	PF07191.12	gi|336254115|ref|YP_004597222.1|	-	0.69	9.9	11.0	0.32	11.0	1.7	2.5	2	1	0	2	2	2	0	zinc-ribbons
A2L_zn_ribbon	PF08792.10	gi|336254115|ref|YP_004597222.1|	-	1	9.1	13.1	16	5.3	2.4	4.1	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-RING_5	PF14634.6	gi|336254115|ref|YP_004597222.1|	-	1.1	9.3	11.0	3	7.9	1.0	3.1	2	1	0	2	2	2	0	zinc-RING	finger	domain
Lar_restr_allev	PF14354.6	gi|336254115|ref|YP_004597222.1|	-	1.5	9.2	14.1	7.8	7.0	2.1	3.5	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
UPF0547	PF10571.9	gi|336254115|ref|YP_004597222.1|	-	2.1	8.5	14.4	1.9	8.6	1.1	3.8	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
C1_1	PF00130.22	gi|336254115|ref|YP_004597222.1|	-	2.2	8.2	9.3	1.1	9.2	1.1	2.8	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DnaJ_CXXCXGXG	PF00684.19	gi|336254115|ref|YP_004597222.1|	-	4.4	7.7	10.7	6.3	7.2	6.1	2.4	1	1	1	2	2	2	0	DnaJ	central	domain
zf-trcl	PF13451.6	gi|336254115|ref|YP_004597222.1|	-	6.1	6.8	16.3	29	4.7	0.1	4.1	3	1	1	4	4	4	0	Probable	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|336254115|ref|YP_004597222.1|	-	7.2	6.4	15.7	3	7.6	3.4	3.8	3	1	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_ribbon_recom	PF13408.6	gi|336254115|ref|YP_004597222.1|	-	9	6.9	12.1	31	5.2	0.2	3.8	3	1	1	4	4	4	0	Recombinase	zinc	beta	ribbon	domain
Fer4_2	PF12797.7	gi|336254115|ref|YP_004597222.1|	-	9.3	6.6	10.2	59	4.1	0.2	4.0	4	0	0	4	4	4	0	4Fe-4S	binding	domain
zinc_ribbon_15	PF17032.5	gi|336254115|ref|YP_004597222.1|	-	9.4	7.1	12.9	38	5.1	7.5	2.9	1	1	1	2	2	2	0	zinc-ribbon	family
Copper-bind	PF00127.20	gi|336254116|ref|YP_004597223.1|	-	7.3e-07	29.6	0.0	1.5e-06	28.6	0.0	1.5	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|336254116|ref|YP_004597223.1|	-	0.008	16.0	2.6	0.014	15.2	2.6	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5518	PF17647.1	gi|336254117|ref|YP_004597224.1|	-	1.6e-17	63.7	35.2	1.8e-17	63.5	35.2	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
DUF4013	PF13197.6	gi|336254117|ref|YP_004597224.1|	-	0.19	11.5	18.8	0.023	14.5	5.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4013)
Rick_17kDa_Anti	PF05433.15	gi|336254117|ref|YP_004597224.1|	-	1.2	9.1	23.6	1.1	9.2	0.7	3.8	4	1	0	4	4	4	0	Glycine	zipper	2TM	domain
IMS	PF00817.20	gi|336254118|ref|YP_004597225.1|	-	6.3e-38	130.1	0.0	1.1e-37	129.4	0.0	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|336254118|ref|YP_004597225.1|	-	1.3e-13	51.7	0.0	1.6e-12	48.2	0.0	2.3	2	1	0	2	2	2	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|336254118|ref|YP_004597225.1|	-	1.5e-05	25.0	0.0	3.5e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.6	gi|336254118|ref|YP_004597225.1|	-	0.0036	17.9	0.0	0.016	15.8	0.0	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|336254118|ref|YP_004597225.1|	-	0.025	14.4	0.0	0.055	13.3	0.0	1.5	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.8	gi|336254118|ref|YP_004597225.1|	-	0.035	14.3	0.0	0.079	13.2	0.0	1.6	1	0	0	1	1	1	0	Pathogenicity	locus
UDG	PF03167.19	gi|336254120|ref|YP_004597227.1|	-	1.3e-10	41.4	0.0	1.7e-10	41.1	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF4918	PF16265.5	gi|336254120|ref|YP_004597227.1|	-	0.085	12.4	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4918)
HTH_10	PF04967.12	gi|336254121|ref|YP_004597228.1|	-	3.9e-16	58.6	0.0	6.2e-16	57.9	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336254121|ref|YP_004597228.1|	-	1.5e-13	50.9	7.3	2.3e-13	50.3	7.3	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336254121|ref|YP_004597228.1|	-	1.3e-07	31.1	0.2	3.2e-07	29.8	0.0	1.7	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336254121|ref|YP_004597228.1|	-	0.0012	18.7	0.3	0.0039	17.0	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336254121|ref|YP_004597228.1|	-	0.0013	18.5	0.4	0.0033	17.2	0.4	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254121|ref|YP_004597228.1|	-	0.0022	17.5	0.1	0.0043	16.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|336254121|ref|YP_004597228.1|	-	0.0075	15.9	0.0	0.018	14.7	0.0	1.6	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_50	PF18024.1	gi|336254121|ref|YP_004597228.1|	-	0.074	12.7	0.0	0.19	11.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdjM	PF04307.14	gi|336254122|ref|YP_004597229.1|	-	6.8e-17	61.3	14.4	3.9e-16	58.8	14.4	1.9	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
hemP	PF10636.9	gi|336254122|ref|YP_004597229.1|	-	0.83	9.5	2.6	7.6	6.4	0.5	2.4	2	0	0	2	2	2	0	Hemin	uptake	protein	hemP
COX15-CtaA	PF02628.15	gi|336254123|ref|YP_004597230.1|	-	1.5e-10	40.7	26.0	6.3e-07	28.8	9.4	3.3	1	1	3	4	4	4	4	Cytochrome	oxidase	assembly	protein
E1-E2_ATPase	PF00122.20	gi|336254123|ref|YP_004597230.1|	-	0.5	9.9	13.0	0.37	10.3	2.3	3.6	1	1	2	4	4	4	0	E1-E2	ATPase
Peptidase_M24	PF00557.24	gi|336254124|ref|YP_004597231.1|	-	2e-11	44.0	2.5	2.8e-11	43.5	2.5	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|336254124|ref|YP_004597231.1|	-	9.4e-06	26.3	0.1	3.4e-05	24.5	0.0	2.0	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
TrmB	PF01978.19	gi|336254125|ref|YP_004597232.1|	-	7.5e-08	32.1	0.1	1.2e-07	31.5	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|336254125|ref|YP_004597232.1|	-	4.1e-06	26.2	0.0	8.5e-06	25.2	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336254125|ref|YP_004597232.1|	-	0.0024	17.9	0.1	0.0047	17.0	0.1	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|336254125|ref|YP_004597232.1|	-	0.0061	16.2	0.1	0.015	14.9	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|336254125|ref|YP_004597232.1|	-	0.01	15.6	0.0	0.016	15.0	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|336254125|ref|YP_004597232.1|	-	0.021	14.7	0.0	0.032	14.1	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_40	PF14493.6	gi|336254125|ref|YP_004597232.1|	-	0.081	13.4	0.0	0.13	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_9	PF08221.11	gi|336254125|ref|YP_004597232.1|	-	0.13	12.3	0.0	0.21	11.7	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Topo-VIb_trans	PF09239.11	gi|336254126|ref|YP_004597233.1|	-	2.2e-62	209.6	0.0	4e-62	208.7	0.0	1.4	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
Top6b_C	PF18000.1	gi|336254126|ref|YP_004597233.1|	-	2.2e-39	134.1	3.9	2.2e-39	134.1	3.9	2.3	3	0	0	3	3	3	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
HATPase_c	PF02518.26	gi|336254126|ref|YP_004597233.1|	-	2e-13	50.8	0.5	7.9e-13	48.9	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|336254126|ref|YP_004597233.1|	-	2.7e-12	46.7	0.0	9.7e-12	44.9	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|336254126|ref|YP_004597233.1|	-	0.02	14.9	2.7	0.11	12.4	0.0	3.3	3	1	0	3	3	3	0	Histidine	kinase-like	ATPase	domain
TP6A_N	PF04406.14	gi|336254127|ref|YP_004597234.1|	-	3.5e-15	55.7	0.1	6.5e-15	54.9	0.1	1.5	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
cpYpsA	PF12694.7	gi|336254127|ref|YP_004597234.1|	-	0.0069	16.2	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	Circularly	permutated	YpsA	SLOG	family
zf_Rg	PF17915.1	gi|336254128|ref|YP_004597235.1|	-	0.058	12.8	0.1	0.082	12.3	0.1	1.3	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
zinc_ribbon_2	PF13240.6	gi|336254129|ref|YP_004597236.1|	-	5.5e-07	29.1	3.3	5.5e-07	29.1	3.3	2.7	3	0	0	3	3	3	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336254129|ref|YP_004597236.1|	-	4.7e-05	22.6	2.6	4.7e-05	22.6	2.6	2.5	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336254129|ref|YP_004597236.1|	-	0.00034	20.6	0.8	0.00034	20.6	0.8	2.7	2	1	0	2	2	2	1	Double	zinc	ribbon
DUF35_N	PF12172.8	gi|336254129|ref|YP_004597236.1|	-	0.00065	19.5	2.6	0.002	18.0	2.6	1.9	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Nudix_N_2	PF14803.6	gi|336254129|ref|YP_004597236.1|	-	0.00085	19.2	10.9	0.34	10.9	0.1	4.4	4	0	0	4	4	4	2	Nudix	N-terminal
zinc_ribbon_15	PF17032.5	gi|336254129|ref|YP_004597236.1|	-	0.0012	19.6	1.5	0.0012	19.6	1.5	2.4	2	1	0	2	2	2	1	zinc-ribbon	family
zf-NADH-PPase	PF09297.11	gi|336254129|ref|YP_004597236.1|	-	0.015	14.9	7.1	1.4	8.7	0.3	3.7	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Apt1	PF10351.9	gi|336254129|ref|YP_004597236.1|	-	0.035	13.0	0.5	0.055	12.3	0.5	1.3	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
DUF2321	PF10083.9	gi|336254129|ref|YP_004597236.1|	-	0.11	12.2	1.4	0.15	11.7	0.1	1.8	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
zinc-ribbons_6	PF07191.12	gi|336254129|ref|YP_004597236.1|	-	0.26	11.3	0.2	0.26	11.3	0.2	2.4	2	1	0	2	2	2	0	zinc-ribbons
Prok-RING_1	PF14446.6	gi|336254129|ref|YP_004597236.1|	-	0.3	11.0	2.4	0.57	10.2	0.6	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
C1_1	PF00130.22	gi|336254129|ref|YP_004597236.1|	-	0.53	10.2	3.7	1.3	9.0	0.2	2.6	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF1272	PF06906.11	gi|336254129|ref|YP_004597236.1|	-	0.57	10.3	5.6	0.5	10.5	1.9	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DHHC	PF01529.20	gi|336254129|ref|YP_004597236.1|	-	1.2	9.3	3.8	1.2	9.2	0.3	2.5	3	0	0	3	3	3	0	DHHC	palmitoyltransferase
C1_2	PF03107.16	gi|336254129|ref|YP_004597236.1|	-	1.5	9.2	6.6	32	4.9	0.8	3.2	3	0	0	3	3	3	0	C1	domain
Zn_ribbon_SprT	PF17283.2	gi|336254129|ref|YP_004597236.1|	-	1.5	8.8	10.1	9.1	6.3	0.1	3.8	3	1	0	3	3	3	0	SprT-like	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|336254129|ref|YP_004597236.1|	-	4.1	7.0	5.8	16	5.1	2.1	3.1	2	1	1	3	3	3	0	TFIIB	zinc-binding
zf-C3HC4_3	PF13920.6	gi|336254129|ref|YP_004597236.1|	-	8.5	6.3	11.5	0.61	10.0	1.4	2.9	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Lactamase_B_3	PF13483.6	gi|336254130|ref|YP_004597237.1|	-	4.3e-32	111.3	0.0	5.8e-32	110.8	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|336254130|ref|YP_004597237.1|	-	9.1e-09	35.1	0.3	1.3e-08	34.7	0.3	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TFIIB	PF00382.19	gi|336254131|ref|YP_004597238.1|	-	2e-38	130.3	0.1	7.6e-20	70.7	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336254131|ref|YP_004597238.1|	-	4.1e-17	61.4	3.3	8.4e-17	60.4	3.3	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|336254131|ref|YP_004597238.1|	-	0.00095	19.2	0.0	0.02	15.0	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|336254131|ref|YP_004597238.1|	-	0.013	15.4	0.9	0.032	14.1	0.9	1.6	2	0	0	2	2	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|336254131|ref|YP_004597238.1|	-	0.02	14.9	0.8	0.034	14.2	0.8	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
YopD	PF05844.12	gi|336254131|ref|YP_004597238.1|	-	0.046	12.7	0.2	0.082	11.9	0.2	1.3	1	0	0	1	1	1	0	YopD	protein
Sigma70_r4	PF04545.16	gi|336254131|ref|YP_004597238.1|	-	0.05	13.1	4.5	0.1	12.2	0.1	3.2	4	0	0	4	4	4	0	Sigma-70,	region	4
Zn-ribbon_8	PF09723.10	gi|336254131|ref|YP_004597238.1|	-	0.19	11.8	6.1	0.99	9.6	1.2	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Auto_anti-p27	PF06677.12	gi|336254131|ref|YP_004597238.1|	-	0.39	10.9	1.2	0.78	9.9	1.2	1.5	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DNA_ligase_ZBD	PF03119.16	gi|336254131|ref|YP_004597238.1|	-	0.43	10.6	2.9	1.4	9.1	2.9	2.0	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf_UBZ	PF18439.1	gi|336254131|ref|YP_004597238.1|	-	0.87	9.2	3.3	8.5	6.1	0.2	2.4	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
A2L_zn_ribbon	PF08792.10	gi|336254131|ref|YP_004597238.1|	-	0.98	9.2	2.4	4.8	7.0	2.4	1.9	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|336254131|ref|YP_004597238.1|	-	1.1	9.6	4.4	0.37	11.2	1.0	2.0	2	0	0	2	2	1	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.6	gi|336254131|ref|YP_004597238.1|	-	1.2	8.6	3.0	12	5.5	3.0	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|336254131|ref|YP_004597238.1|	-	1.8	8.4	3.7	0.49	10.2	0.4	1.7	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
PhnA_Zn_Ribbon	PF08274.12	gi|336254132|ref|YP_004597239.1|	-	0.0025	17.7	3.5	0.21	11.5	0.3	2.1	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
zinc_ribbon_4	PF13717.6	gi|336254132|ref|YP_004597239.1|	-	0.0035	17.2	6.3	0.027	14.4	1.7	1.9	1	1	2	3	3	3	2	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|336254132|ref|YP_004597239.1|	-	0.0042	16.8	0.7	0.71	9.6	0.2	2.2	2	0	0	2	2	2	1	InsA	N-terminal	domain
TF_Zn_Ribbon	PF08271.12	gi|336254132|ref|YP_004597239.1|	-	0.0053	16.2	0.6	0.81	9.3	0.1	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
zinc_ribbon_10	PF10058.9	gi|336254132|ref|YP_004597239.1|	-	0.0061	16.3	0.1	0.0073	16.0	0.1	1.2	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
HypA	PF01155.19	gi|336254132|ref|YP_004597239.1|	-	0.0072	16.3	0.3	0.0077	16.2	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1610	PF07754.11	gi|336254132|ref|YP_004597239.1|	-	0.015	15.2	2.9	1.1	9.3	1.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
NMD3	PF04981.13	gi|336254132|ref|YP_004597239.1|	-	0.025	14.1	0.2	0.025	14.1	0.2	1.0	1	0	0	1	1	1	0	NMD3	family
RNHCP	PF12647.7	gi|336254132|ref|YP_004597239.1|	-	0.026	14.5	0.3	0.031	14.3	0.3	1.2	1	0	0	1	1	1	0	RNHCP	domain
Stc1	PF12898.7	gi|336254132|ref|YP_004597239.1|	-	0.036	14.6	0.4	0.046	14.3	0.4	1.2	1	0	0	1	1	1	0	Stc1	domain
TFIIS_C	PF01096.18	gi|336254132|ref|YP_004597239.1|	-	0.04	13.8	1.8	2.8	7.8	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DZR	PF12773.7	gi|336254132|ref|YP_004597239.1|	-	0.047	13.7	2.2	0.077	13.0	2.2	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|336254132|ref|YP_004597239.1|	-	0.047	13.7	2.0	0.17	11.9	1.8	1.8	1	1	1	2	2	2	0	zinc-ribbons
zf-CHY	PF05495.12	gi|336254132|ref|YP_004597239.1|	-	0.062	13.8	2.5	0.17	12.4	0.3	1.9	1	1	1	2	2	2	0	CHY	zinc	finger
HscB_4_cys	PF18256.1	gi|336254132|ref|YP_004597239.1|	-	0.067	13.0	1.7	0.5	10.2	0.2	2.2	2	0	0	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
CpXC	PF14353.6	gi|336254132|ref|YP_004597239.1|	-	0.081	13.0	0.4	1.2	9.2	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
HalOD2	PF18547.1	gi|336254132|ref|YP_004597239.1|	-	0.2	11.6	2.1	2.9	7.8	2.1	2.1	1	1	0	1	1	1	0	Halobacterial	output	domain	2
Rubredoxin	PF00301.20	gi|336254132|ref|YP_004597239.1|	-	0.27	11.3	4.8	0.38	10.8	0.2	2.1	1	1	1	2	2	2	0	Rubredoxin
zf_Rg	PF17915.1	gi|336254132|ref|YP_004597239.1|	-	0.35	10.3	3.2	17	4.9	1.8	2.4	2	1	0	2	2	2	0	Reverse	gyrase	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|336254132|ref|YP_004597239.1|	-	0.43	10.6	4.8	0.52	10.3	0.6	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
UPF0058	PF01893.16	gi|336254133|ref|YP_004597240.1|	-	5.6e-21	74.6	0.0	5.9e-21	74.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
NinB	PF05772.12	gi|336254133|ref|YP_004597240.1|	-	0.048	13.5	0.0	0.052	13.4	0.0	1.1	1	0	0	1	1	1	0	NinB	protein
DUF555	PF04475.12	gi|336254134|ref|YP_004597241.1|	-	1.3e-37	128.2	0.2	1.8e-37	127.7	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
CNDH2_C	PF16858.5	gi|336254134|ref|YP_004597241.1|	-	0.04	13.8	5.1	0.041	13.8	5.1	1.1	1	0	0	1	1	1	0	Condensin	II	complex	subunit	CAP-H2	or	CNDH2,	C-term
Cwf_Cwc_15	PF04889.12	gi|336254134|ref|YP_004597241.1|	-	0.24	11.1	15.4	0.33	10.6	15.4	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
DUF2076	PF09849.9	gi|336254134|ref|YP_004597241.1|	-	0.38	10.8	5.3	0.45	10.5	5.3	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2076)
SDA1	PF05285.12	gi|336254134|ref|YP_004597241.1|	-	8	5.8	17.3	10	5.5	17.3	1.1	1	0	0	1	1	1	0	SDA1
Nop14	PF04147.12	gi|336254134|ref|YP_004597241.1|	-	8.1	4.5	19.3	9.7	4.3	19.3	1.0	1	0	0	1	1	1	0	Nop14-like	family
HhH-GPD	PF00730.25	gi|336254135|ref|YP_004597242.1|	-	3.7e-15	56.3	0.0	1.2e-14	54.6	0.0	1.8	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
OGG_N	PF07934.12	gi|336254135|ref|YP_004597242.1|	-	1.7e-06	28.1	0.0	6.8e-06	26.2	0.0	1.8	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
AlkA_N	PF06029.11	gi|336254135|ref|YP_004597242.1|	-	0.038	14.3	0.1	0.14	12.5	0.1	1.9	2	0	0	2	2	2	0	AlkA	N-terminal	domain
DUF3784	PF12650.7	gi|336254136|ref|YP_004597243.1|	-	2.3e-05	24.5	0.1	3.1e-05	24.1	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3784)
FUSC_2	PF13515.6	gi|336254137|ref|YP_004597244.1|	-	0.0069	16.5	4.3	0.0088	16.2	4.3	1.0	1	0	0	1	1	1	1	Fusaric	acid	resistance	protein-like
Acylphosphatase	PF00708.18	gi|336254139|ref|YP_004597246.1|	-	1.3e-25	89.6	0.1	1.5e-25	89.4	0.1	1.0	1	0	0	1	1	1	1	Acylphosphatase
Acyl_transf_1	PF00698.21	gi|336254139|ref|YP_004597246.1|	-	0.068	12.7	0.1	0.079	12.5	0.1	1.0	1	0	0	1	1	1	0	Acyl	transferase	domain
Carb_kinase	PF01256.17	gi|336254141|ref|YP_004597248.1|	-	1.2e-41	142.8	1.9	1.9e-41	142.1	1.9	1.3	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|336254141|ref|YP_004597248.1|	-	1.3e-39	135.8	0.7	2.6e-39	134.9	0.7	1.5	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|336254141|ref|YP_004597248.1|	-	5.7e-08	32.4	0.1	1e-07	31.6	0.1	1.5	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.12	gi|336254141|ref|YP_004597248.1|	-	8.4e-08	31.9	0.1	2.1e-07	30.6	0.2	1.6	2	0	0	2	2	2	1	Phosphomethylpyrimidine	kinase
MoaC	PF01967.21	gi|336254142|ref|YP_004597249.1|	-	1.4e-48	164.4	0.4	1.7e-48	164.2	0.4	1.0	1	0	0	1	1	1	1	MoaC	family
NMO	PF03060.15	gi|336254143|ref|YP_004597250.1|	-	2.6e-64	217.7	3.1	5.5e-63	213.3	3.1	2.0	1	1	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|336254143|ref|YP_004597250.1|	-	5e-09	35.6	8.8	5e-09	35.6	8.8	1.5	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|336254143|ref|YP_004597250.1|	-	6.8e-09	35.2	6.6	6e-08	32.1	6.6	2.1	1	1	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
His_biosynth	PF00977.21	gi|336254143|ref|YP_004597250.1|	-	0.013	14.9	0.6	0.028	13.9	0.6	1.5	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|336254143|ref|YP_004597250.1|	-	0.078	12.2	0.9	0.13	11.4	0.9	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
Glu_synthase	PF01645.17	gi|336254143|ref|YP_004597250.1|	-	0.13	11.4	2.8	0.23	10.6	2.8	1.5	1	1	0	1	1	1	0	Conserved	region	in	glutamate	synthase
Lar_restr_allev	PF14354.6	gi|336254144|ref|YP_004597251.1|	-	0.00052	20.3	5.0	0.003	17.9	0.2	2.8	2	1	0	2	2	2	1	Restriction	alleviation	protein	Lar
HTH_20	PF12840.7	gi|336254144|ref|YP_004597251.1|	-	0.0043	17.1	0.0	0.0093	16.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Elf1	PF05129.13	gi|336254144|ref|YP_004597251.1|	-	0.0068	16.4	0.1	1.7	8.7	0.0	2.4	2	0	0	2	2	2	2	Transcription	elongation	factor	Elf1	like
Zn_Tnp_IS1595	PF12760.7	gi|336254144|ref|YP_004597251.1|	-	3.2	7.8	5.0	17	5.5	0.5	2.7	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
DUF1272	PF06906.11	gi|336254144|ref|YP_004597251.1|	-	5.5	7.2	9.5	1.5	8.9	0.2	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1272)
CpXC	PF14353.6	gi|336254144|ref|YP_004597251.1|	-	6.7	6.8	5.6	3.2	7.8	0.9	2.7	2	1	1	3	3	3	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|336254144|ref|YP_004597251.1|	-	7.4	6.8	10.9	12	6.1	0.0	3.6	3	1	0	3	3	3	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|336254144|ref|YP_004597251.1|	-	7.6	6.0	7.7	7	6.1	1.5	2.7	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-Mss51	PF13824.6	gi|336254144|ref|YP_004597251.1|	-	8.9	6.5	7.4	5.6	7.2	0.2	3.0	3	0	0	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Proteasome	PF00227.26	gi|336254145|ref|YP_004597252.1|	-	3.7e-53	179.9	0.0	4.5e-53	179.6	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|336254145|ref|YP_004597252.1|	-	3.5e-12	45.8	0.1	5.6e-12	45.1	0.1	1.3	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
Proteasome	PF00227.26	gi|336254146|ref|YP_004597253.1|	-	1.8e-41	141.8	0.4	2.1e-41	141.5	0.4	1.1	1	0	0	1	1	1	1	Proteasome	subunit
YvrJ	PF12841.7	gi|336254147|ref|YP_004597254.1|	-	0.066	12.8	0.3	0.17	11.5	0.3	1.6	1	0	0	1	1	1	0	YvrJ	protein	family
TatC	PF00902.18	gi|336254147|ref|YP_004597254.1|	-	0.11	12.3	0.9	0.11	12.3	0.9	2.0	2	0	0	2	2	2	0	Sec-independent	protein	translocase	protein	(TatC)
DUF2207	PF09972.9	gi|336254147|ref|YP_004597254.1|	-	2.9	6.6	5.6	2	7.1	0.2	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
adh_short_C2	PF13561.6	gi|336254148|ref|YP_004597255.1|	-	7.2e-65	218.8	2.2	8.1e-65	218.6	2.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336254148|ref|YP_004597255.1|	-	1.1e-57	194.6	0.8	1.3e-57	194.4	0.8	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336254148|ref|YP_004597255.1|	-	1.2e-21	77.4	0.2	1.6e-21	77.1	0.2	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336254148|ref|YP_004597255.1|	-	0.0038	16.7	0.1	0.0057	16.1	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Sacchrp_dh_NADP	PF03435.18	gi|336254148|ref|YP_004597255.1|	-	0.022	15.0	0.0	0.042	14.1	0.0	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Abhydrolase_1	PF00561.20	gi|336254149|ref|YP_004597256.1|	-	1.4e-24	87.2	0.0	2e-24	86.6	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
PhaC_N	PF07167.13	gi|336254149|ref|YP_004597256.1|	-	4.7e-14	52.4	0.1	7.7e-14	51.7	0.1	1.3	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
HHH_5	PF14520.6	gi|336254149|ref|YP_004597256.1|	-	2.8e-11	43.9	0.0	7.5e-11	42.5	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Hydrolase_4	PF12146.8	gi|336254149|ref|YP_004597256.1|	-	9.7e-09	34.8	0.0	7.4e-05	22.1	0.0	2.5	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DUF3141	PF11339.8	gi|336254149|ref|YP_004597256.1|	-	7.8e-07	27.9	0.0	4.5e-06	25.4	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3141)
DLH	PF01738.18	gi|336254149|ref|YP_004597256.1|	-	1.3e-05	24.8	0.0	0.0028	17.2	0.0	2.5	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
DUF4332	PF14229.6	gi|336254149|ref|YP_004597256.1|	-	9.4e-05	22.6	0.5	0.001	19.3	0.5	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
PHB_depo_C	PF06850.11	gi|336254149|ref|YP_004597256.1|	-	0.00018	21.0	0.1	0.00051	19.6	0.0	1.8	2	0	0	2	2	2	1	PHB	de-polymerase	C-terminus
Abhydrolase_6	PF12697.7	gi|336254149|ref|YP_004597256.1|	-	0.00074	20.2	0.1	0.0015	19.2	0.1	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Cdd1	PF11731.8	gi|336254149|ref|YP_004597256.1|	-	0.002	18.3	0.0	0.0044	17.2	0.0	1.6	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|336254149|ref|YP_004597256.1|	-	0.0025	17.6	0.0	0.0059	16.4	0.0	1.6	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
Homez	PF11569.8	gi|336254149|ref|YP_004597256.1|	-	0.071	12.6	0.2	0.49	9.9	0.0	2.2	2	0	0	2	2	2	0	Homeodomain	leucine-zipper	encoding,	Homez
FSH1	PF03959.13	gi|336254149|ref|YP_004597256.1|	-	0.076	12.7	0.0	8	6.0	0.0	2.3	2	0	0	2	2	2	0	Serine	hydrolase	(FSH1)
HHH	PF00633.23	gi|336254149|ref|YP_004597256.1|	-	0.16	11.9	0.3	0.82	9.7	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
PHA_synth_III_E	PF09712.10	gi|336254150|ref|YP_004597257.1|	-	1.1e-06	28.0	12.0	1.6e-05	24.2	0.3	2.1	1	1	1	2	2	2	2	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
XFP	PF03894.15	gi|336254150|ref|YP_004597257.1|	-	0.0064	16.2	0.3	0.012	15.4	0.3	1.4	1	0	0	1	1	1	1	D-xylulose	5-phosphate/D-fructose	6-phosphate	phosphoketolase
BAR_3	PF16746.5	gi|336254150|ref|YP_004597257.1|	-	0.028	14.2	0.3	0.06	13.0	0.2	1.7	1	1	0	1	1	1	0	BAR	domain	of	APPL	family
Mt_ATP-synt_D	PF05873.12	gi|336254150|ref|YP_004597257.1|	-	0.031	14.1	1.9	0.061	13.2	1.7	1.7	1	1	0	1	1	1	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
Phasin	PF05597.11	gi|336254150|ref|YP_004597257.1|	-	0.048	13.7	6.8	0.23	11.4	3.9	2.4	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
COG2	PF06148.11	gi|336254150|ref|YP_004597257.1|	-	0.065	13.3	5.2	3.2	7.8	0.2	2.8	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Hs1pro-1_C	PF07014.12	gi|336254150|ref|YP_004597257.1|	-	0.079	12.4	0.6	0.15	11.5	0.6	1.8	1	1	0	1	1	1	0	Hs1pro-1	protein	C-terminus
QIL1	PF15884.5	gi|336254150|ref|YP_004597257.1|	-	0.1	13.2	0.3	23	5.7	0.1	2.4	2	0	0	2	2	2	0	MICOS	complex	subunit	MIC13,	QIL1
5_nucleotid_C	PF02872.18	gi|336254150|ref|YP_004597257.1|	-	0.1	12.8	0.1	0.28	11.4	0.0	1.6	1	1	0	2	2	2	0	5'-nucleotidase,	C-terminal	domain
Mating_N	PF12731.7	gi|336254150|ref|YP_004597257.1|	-	0.13	12.4	3.6	0.27	11.4	1.0	2.6	2	2	1	3	3	3	0	Mating-type	protein	beta	1
DUF948	PF06103.11	gi|336254150|ref|YP_004597257.1|	-	0.2	11.9	4.4	12	6.3	0.6	3.1	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF5344	PF17279.2	gi|336254150|ref|YP_004597257.1|	-	0.36	11.4	6.5	10	6.8	0.2	3.3	2	2	1	3	3	3	0	Family	of	unknown	function	(DUF5344)
Laminin_II	PF06009.12	gi|336254150|ref|YP_004597257.1|	-	0.92	9.5	5.0	4	7.4	0.7	2.4	1	1	2	3	3	3	0	Laminin	Domain	II
Phasin_2	PF09361.10	gi|336254150|ref|YP_004597257.1|	-	1.5	9.1	10.8	2.5	8.4	1.6	3.0	1	1	0	2	2	2	0	Phasin	protein
DUF4795	PF16043.5	gi|336254151|ref|YP_004597258.1|	-	0.0024	17.5	0.5	0.0038	16.8	0.5	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4795)
ApoLp-III	PF07464.11	gi|336254151|ref|YP_004597258.1|	-	0.0026	17.8	3.6	0.0066	16.6	1.1	2.0	1	1	1	2	2	2	2	Apolipophorin-III	precursor	(apoLp-III)
ADH_zinc_N_2	PF13602.6	gi|336254151|ref|YP_004597258.1|	-	0.0062	17.6	2.1	0.067	14.3	0.2	2.1	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
DUF148	PF02520.17	gi|336254151|ref|YP_004597258.1|	-	0.011	15.8	3.1	2.2	8.4	3.4	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF148
YkyA	PF10368.9	gi|336254151|ref|YP_004597258.1|	-	0.012	15.3	6.7	0.093	12.4	6.7	2.3	1	1	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
Apolipoprotein	PF01442.18	gi|336254151|ref|YP_004597258.1|	-	0.017	15.0	10.4	0.089	12.7	10.5	1.9	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Phasin_2	PF09361.10	gi|336254151|ref|YP_004597258.1|	-	0.026	14.8	16.3	1.5	9.2	2.0	3.0	1	1	0	2	2	2	0	Phasin	protein
DUF1664	PF07889.12	gi|336254151|ref|YP_004597258.1|	-	0.041	13.9	1.3	0.18	11.8	1.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
BMFP	PF04380.13	gi|336254151|ref|YP_004597258.1|	-	0.073	13.6	5.4	4.3	7.9	0.1	3.3	3	0	0	3	3	3	0	Membrane	fusogenic	activity
DUF885	PF05960.11	gi|336254151|ref|YP_004597258.1|	-	0.12	12.0	5.7	0.14	11.8	5.7	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
DUF2959	PF11172.8	gi|336254151|ref|YP_004597258.1|	-	0.15	12.2	9.1	0.34	11.0	5.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2959)
CorA	PF01544.18	gi|336254151|ref|YP_004597258.1|	-	0.19	11.0	1.2	0.25	10.6	1.2	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF5344	PF17279.2	gi|336254151|ref|YP_004597258.1|	-	0.2	12.3	4.9	0.3	11.7	1.7	2.6	2	2	1	3	3	3	0	Family	of	unknown	function	(DUF5344)
CAP_N	PF01213.19	gi|336254151|ref|YP_004597258.1|	-	0.46	9.9	6.6	1.1	8.7	6.6	1.7	1	1	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
Cdh1_DBD_1	PF18196.1	gi|336254151|ref|YP_004597258.1|	-	0.52	10.6	4.1	6	7.2	0.9	2.6	1	1	2	3	3	3	0	Chromodomain	helicase	DNA-binding	domain	1
Phasin	PF05597.11	gi|336254151|ref|YP_004597258.1|	-	1	9.3	7.5	17	5.4	1.4	2.8	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
TBCC_N	PF16752.5	gi|336254151|ref|YP_004597258.1|	-	1.8	9.0	7.2	0.96	9.9	1.4	2.3	1	1	0	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
MazE_antitoxin	PF04014.18	gi|336254152|ref|YP_004597259.1|	-	0.049	13.6	0.7	0.073	13.0	0.7	1.2	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
MaoC_dehydratas	PF01575.19	gi|336254153|ref|YP_004597260.1|	-	3.2e-23	81.6	0.0	8.8e-23	80.2	0.0	1.6	2	0	0	2	2	2	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|336254153|ref|YP_004597260.1|	-	1.6e-07	31.5	0.0	6.2e-07	29.6	0.0	2.0	1	1	1	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|336254153|ref|YP_004597260.1|	-	0.0014	18.9	0.1	0.0071	16.7	0.0	2.3	3	0	0	3	3	3	1	Thioesterase	superfamily
4HBT_2	PF13279.6	gi|336254153|ref|YP_004597260.1|	-	0.005	17.3	0.0	0.011	16.3	0.0	1.4	1	1	0	1	1	1	1	Thioesterase-like	superfamily
PGM_PMM_I	PF02878.16	gi|336254154|ref|YP_004597261.1|	-	1e-31	109.5	0.1	6.3e-31	106.9	0.0	2.1	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|336254154|ref|YP_004597261.1|	-	3.5e-17	62.9	0.1	9.4e-17	61.5	0.1	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|336254154|ref|YP_004597261.1|	-	1e-10	41.6	0.0	4.2e-10	39.6	0.0	2.1	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|336254154|ref|YP_004597261.1|	-	0.00038	20.6	0.1	0.001	19.3	0.1	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Bmp	PF02608.14	gi|336254155|ref|YP_004597262.1|	-	5.2e-58	196.4	5.8	7.6e-58	195.9	5.8	1.2	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Peripla_BP_4	PF13407.6	gi|336254155|ref|YP_004597262.1|	-	1.6e-05	24.6	9.4	4.5e-05	23.2	9.4	1.7	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|336254155|ref|YP_004597262.1|	-	0.14	12.1	2.8	0.31	11.0	2.8	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|336254156|ref|YP_004597263.1|	-	1.2e-47	161.9	0.0	1.4e-30	106.6	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|336254156|ref|YP_004597263.1|	-	1.8e-09	37.8	0.0	0.00017	21.5	0.0	2.3	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|336254156|ref|YP_004597263.1|	-	0.00026	20.7	0.1	0.027	14.2	0.0	2.7	3	0	0	3	3	3	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|336254156|ref|YP_004597263.1|	-	0.0015	18.3	0.2	0.011	15.5	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336254156|ref|YP_004597263.1|	-	0.0089	15.9	0.0	0.08	12.8	0.0	2.4	3	0	0	3	3	3	1	RsgA	GTPase
AAA_22	PF13401.6	gi|336254156|ref|YP_004597263.1|	-	0.0097	16.2	0.1	3.2	8.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|336254156|ref|YP_004597263.1|	-	0.011	15.2	0.1	4.1	6.8	0.0	2.7	3	0	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|336254156|ref|YP_004597263.1|	-	0.017	15.6	0.0	0.032	14.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|336254156|ref|YP_004597263.1|	-	0.021	14.5	0.0	1.1	8.9	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336254156|ref|YP_004597263.1|	-	0.034	14.5	0.0	0.12	12.8	0.0	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|336254156|ref|YP_004597263.1|	-	0.048	13.8	0.0	0.17	12.0	0.0	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_27	PF13514.6	gi|336254156|ref|YP_004597263.1|	-	0.096	12.3	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DLIC	PF05783.11	gi|336254156|ref|YP_004597263.1|	-	0.13	11.1	1.9	0.16	10.8	0.0	2.0	3	0	0	3	3	3	0	Dynein	light	intermediate	chain	(DLIC)
BPD_transp_2	PF02653.16	gi|336254157|ref|YP_004597264.1|	-	6.7e-45	153.3	30.4	6.7e-45	153.3	30.4	2.0	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF1269	PF06897.12	gi|336254157|ref|YP_004597264.1|	-	8.9	6.7	12.1	0.19	12.0	4.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
BPD_transp_2	PF02653.16	gi|336254158|ref|YP_004597265.1|	-	9.5e-34	116.8	31.7	9.5e-34	116.8	31.7	1.5	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
dCMP_cyt_deam_1	PF00383.23	gi|336254159|ref|YP_004597266.1|	-	4.5e-17	61.8	0.2	5.6e-17	61.5	0.2	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|336254159|ref|YP_004597266.1|	-	4.8e-11	43.0	1.3	6.4e-11	42.6	1.3	1.2	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
HTH_10	PF04967.12	gi|336254159|ref|YP_004597266.1|	-	0.12	12.1	0.0	0.26	11.1	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF488	PF04343.13	gi|336254160|ref|YP_004597267.1|	-	1.6e-09	38.4	0.7	4e-09	37.1	0.7	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF488
PNP_UDP_1	PF01048.20	gi|336254161|ref|YP_004597268.1|	-	6.3e-47	159.8	1.9	7.7e-47	159.5	1.9	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DAO_C	PF16901.5	gi|336254161|ref|YP_004597268.1|	-	0.0037	17.1	0.1	0.0064	16.4	0.1	1.4	1	0	0	1	1	1	1	C-terminal	domain	of	alpha-glycerophosphate	oxidase
MS_channel	PF00924.18	gi|336254162|ref|YP_004597269.1|	-	7.5e-17	61.6	0.8	7.5e-17	61.6	0.8	1.7	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|336254162|ref|YP_004597269.1|	-	2.4e-07	30.6	15.1	3.9e-07	29.9	0.1	3.2	3	0	0	3	3	3	2	Conserved	TM	helix
DisA_N	PF02457.16	gi|336254163|ref|YP_004597270.1|	-	6.6e-21	74.1	0.0	1e-20	73.5	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
PK_C	PF02887.16	gi|336254163|ref|YP_004597270.1|	-	0.061	13.6	0.0	0.37	11.0	0.0	2.3	1	1	1	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
Abhydrolase_6	PF12697.7	gi|336254164|ref|YP_004597271.1|	-	4.9e-23	82.9	6.4	5.9e-23	82.6	6.4	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336254164|ref|YP_004597271.1|	-	8.8e-19	68.1	0.0	1.6e-14	54.2	0.1	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336254164|ref|YP_004597271.1|	-	4.8e-12	45.7	0.1	6.2e-11	42.0	0.1	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|336254164|ref|YP_004597271.1|	-	0.21	10.2	0.0	7.4	5.2	0.0	2.0	2	0	0	2	2	2	0	Ndr	family
Xan_ur_permease	PF00860.20	gi|336254165|ref|YP_004597272.1|	-	2.5e-79	266.8	37.5	5.2e-79	265.7	37.5	1.5	1	1	0	1	1	1	1	Permease	family
AAA_lid_2	PF17863.1	gi|336254166|ref|YP_004597273.1|	-	1.1e-20	73.2	3.7	2.9e-20	71.9	0.3	3.0	2	0	0	2	2	2	1	AAA	lid	domain
VWA_2	PF13519.6	gi|336254166|ref|YP_004597273.1|	-	1.1e-12	48.5	0.0	2.2e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Mg_chelatase	PF01078.21	gi|336254166|ref|YP_004597273.1|	-	7.9e-12	45.0	0.0	4.2e-09	36.1	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
VWA	PF00092.28	gi|336254166|ref|YP_004597273.1|	-	1.6e-10	41.5	0.0	2.6e-10	40.8	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
AAA_5	PF07728.14	gi|336254166|ref|YP_004597273.1|	-	1.3e-07	31.7	0.0	5.9e-05	23.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
VWA_CoxE	PF05762.14	gi|336254166|ref|YP_004597273.1|	-	2.8e-06	26.9	6.8	4.8e-06	26.1	6.8	1.3	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
MCM	PF00493.23	gi|336254166|ref|YP_004597273.1|	-	1.2e-05	24.5	0.0	8.9e-05	21.7	0.0	2.2	2	1	0	2	2	2	1	MCM	P-loop	domain
adh_short_C2	PF13561.6	gi|336254166|ref|YP_004597273.1|	-	0.01	15.4	0.9	0.02	14.5	0.9	1.5	1	0	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
VWA_3	PF13768.6	gi|336254166|ref|YP_004597273.1|	-	0.018	15.0	0.1	0.035	14.1	0.1	1.4	1	0	0	1	1	1	0	von	Willebrand	factor	type	A	domain
Sigma54_activat	PF00158.26	gi|336254166|ref|YP_004597273.1|	-	0.019	14.6	0.0	0.23	11.1	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_16	PF13191.6	gi|336254166|ref|YP_004597273.1|	-	0.31	11.4	6.1	1.2	9.5	0.2	3.4	3	1	0	3	3	3	0	AAA	ATPase	domain
CobN-Mg_chel	PF02514.16	gi|336254167|ref|YP_004597274.1|	-	0	1251.4	0.0	0	1251.1	0.0	1.0	1	0	0	1	1	1	1	CobN/Magnesium	Chelatase
LexA_DNA_bind	PF01726.16	gi|336254167|ref|YP_004597274.1|	-	0.0057	16.4	0.0	0.016	14.9	0.0	1.7	1	0	0	1	1	1	1	LexA	DNA	binding	domain
CbiC	PF02570.15	gi|336254168|ref|YP_004597275.1|	-	1.4e-51	175.0	1.2	1.7e-51	174.7	1.2	1.1	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
DUF3531	PF12049.8	gi|336254168|ref|YP_004597275.1|	-	0.19	11.6	0.0	0.32	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3531)
TP_methylase	PF00590.20	gi|336254169|ref|YP_004597276.1|	-	1.2e-36	126.7	0.7	1.4e-36	126.5	0.7	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Methyltransf_11	PF08241.12	gi|336254170|ref|YP_004597277.1|	-	2.5e-26	92.2	0.0	4e-26	91.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336254170|ref|YP_004597277.1|	-	5.3e-25	88.0	0.0	1e-24	87.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254170|ref|YP_004597277.1|	-	3.5e-23	82.1	0.0	4.7e-23	81.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254170|ref|YP_004597277.1|	-	8.1e-20	71.3	0.0	1.1e-19	70.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336254170|ref|YP_004597277.1|	-	1.7e-18	66.9	0.0	2.6e-18	66.2	0.0	1.3	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336254170|ref|YP_004597277.1|	-	1.8e-14	54.2	0.0	3e-14	53.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|336254170|ref|YP_004597277.1|	-	3.6e-07	29.9	0.0	5.5e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
TehB	PF03848.14	gi|336254170|ref|YP_004597277.1|	-	2.5e-05	23.8	0.0	3.4e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_32	PF13679.6	gi|336254170|ref|YP_004597277.1|	-	6.5e-05	23.0	0.0	0.00017	21.6	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
MetW	PF07021.12	gi|336254170|ref|YP_004597277.1|	-	9.2e-05	22.1	0.0	0.00013	21.7	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
TPMT	PF05724.11	gi|336254170|ref|YP_004597277.1|	-	0.00029	20.6	0.0	0.00069	19.3	0.0	1.6	2	0	0	2	2	2	1	Thiopurine	S-methyltransferase	(TPMT)
DREV	PF05219.12	gi|336254170|ref|YP_004597277.1|	-	0.00049	19.3	0.0	0.0006	19.0	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
NodS	PF05401.11	gi|336254170|ref|YP_004597277.1|	-	0.00062	19.4	0.0	0.00081	19.1	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_2	PF00891.18	gi|336254170|ref|YP_004597277.1|	-	0.00065	19.1	0.0	0.00088	18.6	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
AdoMet_MTase	PF07757.13	gi|336254170|ref|YP_004597277.1|	-	0.0011	19.3	0.0	0.0017	18.7	0.0	1.3	1	0	0	1	1	1	1	Predicted	AdoMet-dependent	methyltransferase
GidB	PF02527.15	gi|336254170|ref|YP_004597277.1|	-	0.0013	18.1	0.0	0.0027	17.0	0.0	1.4	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
PrmA	PF06325.13	gi|336254170|ref|YP_004597277.1|	-	0.0013	18.2	0.0	0.0018	17.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|336254170|ref|YP_004597277.1|	-	0.0019	18.0	0.0	0.0031	17.3	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|336254170|ref|YP_004597277.1|	-	0.0028	17.0	0.0	0.0035	16.7	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|336254170|ref|YP_004597277.1|	-	0.0053	16.7	0.0	0.01	15.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.16	gi|336254170|ref|YP_004597277.1|	-	0.056	12.0	0.0	0.12	10.9	0.0	1.6	1	1	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
ADH_zinc_N	PF00107.26	gi|336254170|ref|YP_004597277.1|	-	0.19	11.7	0.0	0.39	10.7	0.0	1.5	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
DUF1802	PF08819.11	gi|336254172|ref|YP_004597279.1|	-	5e-40	137.2	0.0	5.7e-40	137.0	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1802)
GATase_3	PF07685.14	gi|336254173|ref|YP_004597280.1|	-	1.2e-31	109.8	0.0	1.6e-31	109.5	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|336254173|ref|YP_004597280.1|	-	2.2e-11	43.9	0.0	3.7e-11	43.2	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|336254173|ref|YP_004597280.1|	-	6.5e-11	42.4	0.0	1.9e-06	27.9	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
CTP_synth_N	PF06418.14	gi|336254173|ref|YP_004597280.1|	-	0.0023	17.3	0.1	0.0044	16.4	0.1	1.4	1	0	0	1	1	1	1	CTP	synthase	N-terminus
SNO	PF01174.19	gi|336254173|ref|YP_004597280.1|	-	0.0097	15.8	0.0	0.021	14.6	0.0	1.5	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Methyltransf_25	PF13649.6	gi|336254174|ref|YP_004597281.1|	-	0.0005	20.7	0.1	0.00081	20.1	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336254174|ref|YP_004597281.1|	-	0.0024	17.5	0.0	0.0037	16.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.12	gi|336254174|ref|YP_004597281.1|	-	0.0031	18.1	0.1	0.0093	16.6	0.1	1.7	1	1	1	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336254174|ref|YP_004597281.1|	-	0.0077	16.0	0.0	0.013	15.2	0.0	1.3	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GATase_3	PF07685.14	gi|336254174|ref|YP_004597281.1|	-	0.022	14.3	0.0	0.037	13.6	0.0	1.4	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
MTS	PF05175.14	gi|336254174|ref|YP_004597281.1|	-	0.027	14.0	0.1	0.058	12.9	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	small	domain
DOT1	PF08123.13	gi|336254174|ref|YP_004597281.1|	-	0.086	12.4	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
CMAS	PF02353.20	gi|336254174|ref|YP_004597281.1|	-	0.089	12.1	0.0	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_31	PF13847.6	gi|336254174|ref|YP_004597281.1|	-	0.1	12.4	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|336254174|ref|YP_004597281.1|	-	0.17	11.6	0.0	0.24	11.1	0.0	1.2	1	0	0	1	1	1	0	Lysine	methyltransferase
TP_methylase	PF00590.20	gi|336254175|ref|YP_004597282.1|	-	1.8e-36	126.1	1.1	3.1e-36	125.3	1.1	1.4	1	1	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|336254176|ref|YP_004597283.1|	-	1.3e-38	133.1	0.2	1.8e-38	132.7	0.2	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Radical_SAM	PF04055.21	gi|336254176|ref|YP_004597283.1|	-	0.00068	20.0	0.1	0.0016	18.8	0.1	1.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
RraB	PF06877.11	gi|336254176|ref|YP_004597283.1|	-	0.01	16.5	0.0	0.036	14.8	0.0	1.9	2	0	0	2	2	2	0	Regulator	of	ribonuclease	activity	B
CbiA	PF01656.23	gi|336254177|ref|YP_004597284.1|	-	2.3e-10	40.6	0.0	5.3e-10	39.5	0.0	1.6	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|336254177|ref|YP_004597284.1|	-	8.6e-08	32.2	0.1	9.9e-06	25.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|336254177|ref|YP_004597284.1|	-	1.8e-07	30.9	0.0	1e-06	28.4	0.0	2.0	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_25	PF13481.6	gi|336254177|ref|YP_004597284.1|	-	1.4e-06	28.1	2.9	0.00063	19.4	0.0	3.4	3	1	1	4	4	4	2	AAA	domain
AAA_31	PF13614.6	gi|336254177|ref|YP_004597284.1|	-	5.7e-05	23.1	0.0	0.0042	17.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AP_endonuc_2	PF01261.24	gi|336254177|ref|YP_004597284.1|	-	9e-05	22.0	0.0	0.14	11.6	0.0	2.4	2	1	0	2	2	2	2	Xylose	isomerase-like	TIM	barrel
MipZ	PF09140.11	gi|336254177|ref|YP_004597284.1|	-	0.00011	21.6	0.0	0.00029	20.2	0.0	1.6	2	0	0	2	2	2	1	ATPase	MipZ
Acetyltransf_6	PF13480.7	gi|336254177|ref|YP_004597284.1|	-	0.011	15.8	2.2	0.021	15.0	1.1	2.0	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
TPP_enzyme_M	PF00205.22	gi|336254177|ref|YP_004597284.1|	-	0.037	13.8	0.0	0.092	12.5	0.0	1.6	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	central	domain
CBP_BcsQ	PF06564.12	gi|336254177|ref|YP_004597284.1|	-	0.046	13.2	0.0	0.65	9.4	0.0	2.2	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
RcpC	PF16976.5	gi|336254178|ref|YP_004597285.1|	-	0.05	13.6	0.8	0.11	12.6	0.1	2.0	2	0	0	2	2	2	0	Flp	pilus	assembly	protein	RcpC/CpaB
5TM-5TMR_LYT	PF07694.12	gi|336254178|ref|YP_004597285.1|	-	1.3	8.5	6.0	2.1	7.8	6.0	1.2	1	0	0	1	1	1	0	5TMR	of	5TMR-LYT
TrkA_C	PF02080.21	gi|336254179|ref|YP_004597286.1|	-	0.019	14.8	0.0	0.039	13.8	0.0	1.6	1	0	0	1	1	1	0	TrkA-C	domain
ParA	PF10609.9	gi|336254181|ref|YP_004597288.1|	-	7.5e-10	38.7	2.3	3.8e-05	23.3	0.3	2.4	2	1	1	3	3	3	2	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|336254181|ref|YP_004597288.1|	-	2.4e-09	37.3	0.0	3.1e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|336254181|ref|YP_004597288.1|	-	8.6e-08	32.3	0.0	0.0021	18.0	0.2	2.1	2	0	0	2	2	2	2	AAA	domain
Fer4_NifH	PF00142.18	gi|336254181|ref|YP_004597288.1|	-	1.5e-06	27.9	0.1	0.0085	15.6	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|336254181|ref|YP_004597288.1|	-	1.6e-06	27.7	2.9	5.8e-05	22.7	0.2	2.7	2	1	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|336254181|ref|YP_004597288.1|	-	0.0001	21.7	0.3	0.06	12.6	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
AAA_33	PF13671.6	gi|336254181|ref|YP_004597288.1|	-	0.00021	21.5	0.8	0.002	18.3	0.8	2.3	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|336254181|ref|YP_004597288.1|	-	0.12	11.5	0.6	0.21	10.7	0.6	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
Aldo_ket_red	PF00248.21	gi|336254182|ref|YP_004597289.1|	-	4.2e-72	242.8	0.0	4.7e-72	242.7	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
TENA_THI-4	PF03070.16	gi|336254183|ref|YP_004597290.1|	-	1.5e-50	172.0	1.1	1.7e-50	171.8	1.1	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Haem_oxygenas_2	PF14518.6	gi|336254183|ref|YP_004597290.1|	-	0.019	14.8	1.4	0.032	14.0	1.4	1.5	1	1	0	1	1	1	0	Iron-containing	redox	enzyme
CBS	PF00571.28	gi|336254185|ref|YP_004597292.1|	-	1.5e-23	83.0	3.1	3e-11	43.6	0.4	2.1	2	0	0	2	2	2	2	CBS	domain
His_biosynth	PF00977.21	gi|336254185|ref|YP_004597292.1|	-	0.11	12.0	0.0	1.5	8.2	0.0	2.0	1	1	1	2	2	2	0	Histidine	biosynthesis	protein
MFS_1	PF07690.16	gi|336254186|ref|YP_004597293.1|	-	1e-22	80.6	59.5	1.8e-17	63.3	40.8	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Molybdopterin	PF00384.22	gi|336254187|ref|YP_004597294.1|	-	4.5e-80	269.7	0.0	5.6e-80	269.4	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|336254187|ref|YP_004597294.1|	-	2.8e-28	98.1	0.1	5.5e-28	97.2	0.1	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.6	gi|336254187|ref|YP_004597294.1|	-	8.6e-24	83.4	0.2	2.1e-23	82.2	0.2	1.7	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|336254187|ref|YP_004597294.1|	-	2.1e-12	46.4	1.8	2.1e-12	46.4	1.8	2.2	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdop_Fe4S4	PF04879.16	gi|336254187|ref|YP_004597294.1|	-	1.4e-11	44.2	0.3	1.4e-11	44.2	0.3	2.3	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_6	PF12837.7	gi|336254187|ref|YP_004597294.1|	-	3.8e-10	39.4	20.2	4.9e-07	29.5	1.0	3.4	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336254187|ref|YP_004597294.1|	-	4.4e-09	36.3	8.3	4.4e-09	36.3	8.3	3.2	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336254187|ref|YP_004597294.1|	-	1.2e-08	35.3	9.9	1.2e-08	35.3	9.9	4.0	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336254187|ref|YP_004597294.1|	-	4.6e-08	32.6	12.9	8.9e-07	28.5	1.4	3.7	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|336254187|ref|YP_004597294.1|	-	4.2e-07	30.0	6.2	4.2e-07	30.0	6.2	4.0	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336254187|ref|YP_004597294.1|	-	3.1e-05	24.0	22.5	0.00029	20.9	14.1	4.2	3	2	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336254187|ref|YP_004597294.1|	-	7.3e-05	23.1	8.6	7.3e-05	23.1	8.6	3.5	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|336254187|ref|YP_004597294.1|	-	0.0001	23.0	12.0	0.015	16.1	0.6	4.3	4	0	0	4	4	3	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|336254187|ref|YP_004597294.1|	-	0.00032	21.2	8.5	0.082	13.5	0.4	3.1	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_16	PF13484.6	gi|336254187|ref|YP_004597294.1|	-	0.00058	20.7	0.3	0.00058	20.7	0.3	4.1	5	0	0	5	5	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|336254187|ref|YP_004597294.1|	-	0.0019	18.2	15.4	0.0032	17.5	4.5	4.4	5	0	0	5	5	4	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|336254187|ref|YP_004597294.1|	-	0.0042	17.9	8.4	0.098	13.5	0.8	3.3	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|336254187|ref|YP_004597294.1|	-	0.017	15.3	14.0	0.023	14.9	0.8	3.0	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Complex1_51K	PF01512.17	gi|336254188|ref|YP_004597295.1|	-	9.9e-19	67.7	0.0	1.8e-18	66.9	0.0	1.4	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
NADH_4Fe-4S	PF10589.9	gi|336254188|ref|YP_004597295.1|	-	3.2e-18	65.6	1.1	3.2e-18	65.6	1.1	1.7	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Glyco_tranf_2_3	PF13641.6	gi|336254188|ref|YP_004597295.1|	-	0.025	14.5	0.9	0.14	12.0	0.5	2.4	2	0	0	2	2	2	0	Glycosyltransferase	like	family	2
RTP1_C2	PF10304.9	gi|336254188|ref|YP_004597295.1|	-	0.034	13.8	0.4	0.088	12.5	0.4	1.8	1	0	0	1	1	1	0	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	2
acVLRF1	PF18859.1	gi|336254188|ref|YP_004597295.1|	-	0.31	11.3	6.0	0.8	10.0	0.1	3.5	3	0	0	3	3	3	0	Actinobacteria/chloroflexi	VLRF1	release	factor
PMSR	PF01625.21	gi|336254189|ref|YP_004597296.1|	-	4.4e-66	221.8	1.3	5.1e-66	221.6	1.3	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
DUF4298	PF14131.6	gi|336254189|ref|YP_004597296.1|	-	0.084	12.8	0.4	0.14	12.2	0.4	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4298)
HMA	PF00403.26	gi|336254189|ref|YP_004597296.1|	-	0.13	12.8	0.0	1.2	9.6	0.0	2.4	3	0	0	3	3	3	0	Heavy-metal-associated	domain
RibD_C	PF01872.17	gi|336254190|ref|YP_004597297.1|	-	3e-55	187.2	0.2	3.3e-55	187.0	0.2	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
EamA	PF00892.20	gi|336254192|ref|YP_004597299.1|	-	2.3e-27	95.9	29.9	9.8e-15	54.9	11.8	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|336254192|ref|YP_004597299.1|	-	0.1	11.9	9.9	0.046	13.1	1.8	2.3	1	1	1	3	3	3	0	Triose-phosphate	Transporter	family
NosL	PF05573.12	gi|336254193|ref|YP_004597300.1|	-	2.4e-13	50.5	0.0	3.4e-13	50.1	0.0	1.2	1	0	0	1	1	1	1	NosL
TAT_signal	PF10518.9	gi|336254193|ref|YP_004597300.1|	-	0.062	13.2	3.8	0.11	12.4	3.8	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Polyketide_cyc	PF03364.20	gi|336254194|ref|YP_004597301.1|	-	3e-07	30.7	0.1	4.3e-07	30.2	0.1	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.9	gi|336254194|ref|YP_004597301.1|	-	0.00016	22.0	1.5	0.00017	21.9	1.5	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
PhoU	PF01895.19	gi|336254195|ref|YP_004597302.1|	-	3.5e-20	72.3	9.1	1.8e-17	63.6	1.8	2.5	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|336254195|ref|YP_004597302.1|	-	4.4e-09	36.1	0.0	1.3e-08	34.6	0.0	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
CorA	PF01544.18	gi|336254196|ref|YP_004597303.1|	-	4.6e-05	22.9	1.6	4.6e-05	22.9	1.6	1.8	2	0	0	2	2	2	1	CorA-like	Mg2+	transporter	protein
BLOC1_2	PF10046.9	gi|336254196|ref|YP_004597303.1|	-	0.00063	20.0	0.2	0.22	11.8	0.1	2.8	2	1	0	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Spectrin	PF00435.21	gi|336254196|ref|YP_004597303.1|	-	0.0029	18.1	0.8	1.2	9.6	0.1	3.2	1	1	3	4	4	4	1	Spectrin	repeat
Laminin_II	PF06009.12	gi|336254196|ref|YP_004597303.1|	-	0.0067	16.4	0.1	1.9	8.5	0.1	2.3	2	0	0	2	2	2	2	Laminin	Domain	II
Snapin_Pallidin	PF14712.6	gi|336254196|ref|YP_004597303.1|	-	0.009	16.4	0.0	1.4	9.4	0.0	3.3	3	1	0	3	3	3	1	Snapin/Pallidin
NPV_P10	PF05531.12	gi|336254196|ref|YP_004597303.1|	-	0.045	14.2	0.2	14	6.3	0.5	3.8	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF1664	PF07889.12	gi|336254196|ref|YP_004597303.1|	-	0.096	12.7	0.0	3.3	7.8	0.0	2.9	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1664)
KASH_CCD	PF14662.6	gi|336254196|ref|YP_004597303.1|	-	0.17	11.7	0.0	0.35	10.7	0.0	1.6	1	0	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
ATG16	PF08614.11	gi|336254196|ref|YP_004597303.1|	-	0.87	9.8	7.1	0.28	11.4	0.6	2.8	2	2	0	2	2	2	0	Autophagy	protein	16	(ATG16)
Rbsn	PF11464.8	gi|336254196|ref|YP_004597303.1|	-	1.2	8.9	3.4	1	9.1	0.5	2.4	2	0	0	2	2	2	0	Rabenosyn	Rab	binding	domain
PhoU	PF01895.19	gi|336254197|ref|YP_004597304.1|	-	8.2e-39	132.0	10.3	3.8e-22	78.5	0.7	2.1	2	0	0	2	2	2	2	PhoU	domain
Kre28	PF17097.5	gi|336254197|ref|YP_004597304.1|	-	0.083	11.8	0.3	5.2	5.9	0.0	2.1	2	0	0	2	2	2	0	Spindle	pole	body	component
HSCB_C	PF07743.13	gi|336254197|ref|YP_004597304.1|	-	1.2	9.7	5.4	0.63	10.6	0.7	2.4	2	0	0	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
ABC_tran	PF00005.27	gi|336254198|ref|YP_004597305.1|	-	1.5e-31	109.7	0.0	2.5e-31	109.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336254198|ref|YP_004597305.1|	-	1e-11	45.2	0.0	8.2e-05	22.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336254198|ref|YP_004597305.1|	-	2.3e-08	33.8	0.0	1.3e-06	28.0	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|336254198|ref|YP_004597305.1|	-	1.8e-05	24.6	0.0	9.3e-05	22.3	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336254198|ref|YP_004597305.1|	-	0.00016	22.0	0.0	0.00047	20.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336254198|ref|YP_004597305.1|	-	0.00016	22.1	0.2	0.00051	20.5	0.2	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|336254198|ref|YP_004597305.1|	-	0.00019	21.4	0.0	0.00044	20.2	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|336254198|ref|YP_004597305.1|	-	0.00046	19.9	0.0	0.00096	18.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|336254198|ref|YP_004597305.1|	-	0.00075	19.1	0.1	0.022	14.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|336254198|ref|YP_004597305.1|	-	0.0017	18.9	0.0	0.0038	17.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|336254198|ref|YP_004597305.1|	-	0.0027	17.7	0.0	0.0044	17.0	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
DeoRC	PF00455.22	gi|336254198|ref|YP_004597305.1|	-	0.011	15.7	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
AAA_30	PF13604.6	gi|336254198|ref|YP_004597305.1|	-	0.014	15.2	0.0	0.36	10.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|336254198|ref|YP_004597305.1|	-	0.035	14.3	0.0	0.097	12.8	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|336254198|ref|YP_004597305.1|	-	0.046	14.3	0.2	0.17	12.5	0.0	2.1	3	0	0	3	3	2	0	AAA	domain
NB-ARC	PF00931.22	gi|336254198|ref|YP_004597305.1|	-	0.059	12.5	0.0	0.077	12.2	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Adeno_IVa2	PF02456.15	gi|336254198|ref|YP_004597305.1|	-	0.071	11.9	0.0	1.6	7.4	0.0	2.1	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.22	gi|336254199|ref|YP_004597306.1|	-	4.5e-19	68.9	15.4	4.5e-19	68.9	15.4	4.8	1	1	4	5	5	5	1	Binding-protein-dependent	transport	system	inner	membrane	component
TNFR_16_TM	PF18422.1	gi|336254199|ref|YP_004597306.1|	-	5.6	7.0	5.4	25	4.9	5.4	2.2	1	0	0	1	1	1	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
BPD_transp_1	PF00528.22	gi|336254200|ref|YP_004597307.1|	-	1.4e-17	64.0	11.6	1.4e-17	64.0	11.6	2.7	1	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2048	PF09752.9	gi|336254200|ref|YP_004597307.1|	-	0.039	13.0	0.1	0.06	12.4	0.1	1.2	1	0	0	1	1	1	0	Abhydrolase	domain	containing	18
Abhydrolase_6	PF12697.7	gi|336254200|ref|YP_004597307.1|	-	0.25	11.9	6.9	0.35	11.5	6.2	1.8	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
YlaC	PF10777.9	gi|336254200|ref|YP_004597307.1|	-	1	9.2	3.9	0.92	9.3	0.1	2.5	3	0	0	3	3	3	0	Inner	membrane	protein	YlaC
PBP_like_2	PF12849.7	gi|336254201|ref|YP_004597308.1|	-	7.9e-22	78.2	0.6	7.9e-22	78.2	0.6	1.8	2	1	0	2	2	2	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|336254201|ref|YP_004597308.1|	-	1.1e-11	44.2	0.1	1.8e-11	43.6	0.1	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
Hydrolase	PF00702.26	gi|336254201|ref|YP_004597308.1|	-	0.03	14.6	0.1	0.067	13.5	0.0	1.6	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
TAT_signal	PF10518.9	gi|336254201|ref|YP_004597308.1|	-	0.083	12.8	3.1	0.16	11.8	3.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Metallophos	PF00149.28	gi|336254202|ref|YP_004597309.1|	-	2.7e-18	67.2	0.2	3.6e-18	66.8	0.2	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|336254202|ref|YP_004597309.1|	-	1.2e-10	41.8	0.6	3.8e-10	40.2	0.6	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
zf-Di19	PF05605.12	gi|336254203|ref|YP_004597310.1|	-	0.023	15.0	0.1	0.034	14.4	0.1	1.2	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_2	PF12756.7	gi|336254203|ref|YP_004597310.1|	-	0.089	13.1	0.1	0.11	12.8	0.1	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
YlqD	PF11068.8	gi|336254204|ref|YP_004597311.1|	-	0.016	15.6	4.9	0.016	15.6	4.9	2.4	2	1	1	3	3	3	0	YlqD	protein
LuxC	PF05893.14	gi|336254204|ref|YP_004597311.1|	-	0.039	13.0	0.7	0.054	12.5	0.7	1.1	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
DUF3584	PF12128.8	gi|336254204|ref|YP_004597311.1|	-	0.04	11.4	10.0	0.0079	13.8	6.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Exonuc_VII_L	PF02601.15	gi|336254204|ref|YP_004597311.1|	-	0.086	12.4	5.2	0.033	13.7	2.6	1.6	2	0	0	2	2	2	0	Exonuclease	VII,	large	subunit
Laminin_II	PF06009.12	gi|336254204|ref|YP_004597311.1|	-	0.11	12.6	2.3	0.25	11.3	2.3	1.6	1	0	0	1	1	1	0	Laminin	Domain	II
YkyA	PF10368.9	gi|336254204|ref|YP_004597311.1|	-	0.16	11.6	2.0	0.39	10.4	2.0	1.7	1	1	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
Baculo_PEP_C	PF04513.12	gi|336254204|ref|YP_004597311.1|	-	1	9.4	3.8	5.9	6.9	0.3	2.6	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4407	PF14362.6	gi|336254204|ref|YP_004597311.1|	-	1.7	7.9	13.1	13	5.0	0.1	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
HTH_24	PF13412.6	gi|336254206|ref|YP_004597313.1|	-	7.1e-14	51.1	0.0	1.3e-13	50.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|336254206|ref|YP_004597313.1|	-	7.7e-12	45.0	0.0	1.3e-11	44.3	0.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|336254206|ref|YP_004597313.1|	-	1.2e-09	37.9	0.0	2.1e-09	37.0	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336254206|ref|YP_004597313.1|	-	5.6e-08	32.5	0.0	1e-07	31.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336254206|ref|YP_004597313.1|	-	9.6e-08	31.9	0.2	3.1e-07	30.2	0.0	2.0	2	1	0	2	2	1	1	HTH	domain
HTH_36	PF13730.6	gi|336254206|ref|YP_004597313.1|	-	4.1e-07	29.9	0.0	7.5e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|336254206|ref|YP_004597313.1|	-	1e-06	28.3	0.0	2.3e-06	27.2	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336254206|ref|YP_004597313.1|	-	5.6e-06	26.5	0.1	1.6e-05	25.0	0.1	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|336254206|ref|YP_004597313.1|	-	7.7e-06	25.5	0.0	1.7e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|336254206|ref|YP_004597313.1|	-	8.3e-06	25.6	0.0	1.7e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336254206|ref|YP_004597313.1|	-	9.5e-06	25.4	0.0	0.00012	21.9	0.0	2.2	2	0	0	2	2	2	1	MarR	family
FaeA	PF04703.12	gi|336254206|ref|YP_004597313.1|	-	1.3e-05	25.5	0.0	2.1e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	FaeA-like	protein
LacI	PF00356.21	gi|336254206|ref|YP_004597313.1|	-	4e-05	23.3	0.0	0.00066	19.4	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	lacI	family
MarR	PF01047.22	gi|336254206|ref|YP_004597313.1|	-	4.2e-05	23.4	0.0	9.6e-05	22.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|336254206|ref|YP_004597313.1|	-	4.4e-05	23.4	0.0	8e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254206|ref|YP_004597313.1|	-	6.1e-05	23.0	0.0	0.00013	21.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|336254206|ref|YP_004597313.1|	-	7.5e-05	22.8	0.0	0.00017	21.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336254206|ref|YP_004597313.1|	-	8.9e-05	22.4	0.0	0.00016	21.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
Rrf2	PF02082.20	gi|336254206|ref|YP_004597313.1|	-	0.00012	22.4	0.1	0.00062	20.1	0.0	2.0	1	1	1	2	2	2	1	Transcriptional	regulator
TrmB	PF01978.19	gi|336254206|ref|YP_004597313.1|	-	0.00018	21.3	0.1	0.00033	20.5	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|336254206|ref|YP_004597313.1|	-	0.00048	19.7	0.1	0.0012	18.4	0.0	1.7	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.12	gi|336254206|ref|YP_004597313.1|	-	0.0019	18.0	0.1	0.0049	16.6	0.0	1.7	2	0	0	2	2	1	1	HTH	DNA	binding	domain
HTH_47	PF16221.5	gi|336254206|ref|YP_004597313.1|	-	0.0026	17.3	0.0	0.005	16.4	0.0	1.5	1	0	0	1	1	1	1	winged	helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|336254206|ref|YP_004597313.1|	-	0.0031	17.1	0.0	0.0064	16.1	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF1670	PF07900.11	gi|336254206|ref|YP_004597313.1|	-	0.0053	16.1	0.1	0.0071	15.7	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1670)
HTH_Mga	PF08280.11	gi|336254206|ref|YP_004597313.1|	-	0.0056	16.7	0.0	0.012	15.6	0.0	1.6	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
TetR_N	PF00440.23	gi|336254206|ref|YP_004597313.1|	-	0.0071	16.1	0.1	0.013	15.2	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TFIIE_alpha	PF02002.17	gi|336254206|ref|YP_004597313.1|	-	0.008	16.0	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_Tnp_ISL3	PF13542.6	gi|336254206|ref|YP_004597313.1|	-	0.015	14.7	0.0	0.022	14.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_3	PF01381.22	gi|336254206|ref|YP_004597313.1|	-	0.017	15.2	0.0	0.039	14.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
HTH_6	PF01418.17	gi|336254206|ref|YP_004597313.1|	-	0.025	14.5	0.0	0.046	13.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_1	PF00126.27	gi|336254206|ref|YP_004597313.1|	-	0.027	14.4	0.0	0.05	13.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_45	PF14947.6	gi|336254206|ref|YP_004597313.1|	-	0.034	14.1	0.0	0.068	13.2	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix
DUF4110	PF13422.6	gi|336254206|ref|YP_004597313.1|	-	0.038	14.0	0.0	0.065	13.3	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4110)
HTH_27	PF13463.6	gi|336254206|ref|YP_004597313.1|	-	0.053	14.0	0.0	0.14	12.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_40	PF14493.6	gi|336254206|ref|YP_004597313.1|	-	0.064	13.7	0.0	0.14	12.6	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|336254206|ref|YP_004597313.1|	-	0.076	13.4	0.0	0.13	12.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF3659	PF12396.8	gi|336254206|ref|YP_004597313.1|	-	0.076	12.9	0.2	10	6.1	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
HTH_17	PF12728.7	gi|336254206|ref|YP_004597313.1|	-	0.1	12.8	0.0	0.17	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|336254206|ref|YP_004597313.1|	-	0.1	12.1	0.0	0.23	11.0	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
AbiEi_4	PF13338.6	gi|336254206|ref|YP_004597313.1|	-	0.12	12.6	0.0	0.23	11.7	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
TnsD	PF15978.5	gi|336254206|ref|YP_004597313.1|	-	0.12	11.3	0.0	0.14	11.1	0.0	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
RPA_C	PF08784.11	gi|336254206|ref|YP_004597313.1|	-	0.12	13.0	0.0	0.25	12.0	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_30	PF13556.6	gi|336254206|ref|YP_004597313.1|	-	0.13	12.1	0.0	0.25	11.2	0.0	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
MerR	PF00376.23	gi|336254206|ref|YP_004597313.1|	-	0.13	12.0	0.0	0.3	10.9	0.0	1.6	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_32	PF13565.6	gi|336254206|ref|YP_004597313.1|	-	0.14	12.8	0.1	0.46	11.1	0.1	1.9	1	1	1	2	2	2	0	Homeodomain-like	domain
Tetraspanin	PF00335.20	gi|336254207|ref|YP_004597314.1|	-	0.0033	17.2	1.2	0.0039	16.9	1.2	1.0	1	0	0	1	1	1	1	Tetraspanin	family
DZR	PF12773.7	gi|336254208|ref|YP_004597315.1|	-	5e-10	39.2	16.1	9.6e-10	38.3	10.5	3.0	3	0	0	3	3	3	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336254208|ref|YP_004597315.1|	-	1.3e-09	37.4	19.5	2.1e-06	27.2	2.7	3.4	3	0	0	3	3	3	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336254208|ref|YP_004597315.1|	-	6.5e-08	31.7	27.1	2.7e-05	23.4	3.4	3.9	4	0	0	4	4	4	2	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336254208|ref|YP_004597315.1|	-	0.00038	21.2	15.9	0.018	15.8	0.5	3.3	3	1	0	3	3	3	2	zinc-ribbon	family
UPF0547	PF10571.9	gi|336254208|ref|YP_004597315.1|	-	0.003	17.6	5.2	0.003	17.6	5.2	3.2	4	0	0	4	4	3	1	Uncharacterised	protein	family	UPF0547
DUF35_N	PF12172.8	gi|336254208|ref|YP_004597315.1|	-	0.0037	17.1	17.0	0.029	14.3	3.5	3.2	3	0	0	3	3	3	2	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
RseC_MucC	PF04246.12	gi|336254208|ref|YP_004597315.1|	-	0.0067	16.4	0.7	0.0067	16.4	0.7	2.2	2	0	0	2	2	2	1	Positive	regulator	of	sigma(E),	RseC/MucC
Phage_holin_2_4	PF16082.5	gi|336254208|ref|YP_004597315.1|	-	0.022	14.5	2.3	0.022	14.5	0.4	2.1	2	0	0	2	2	2	0	Bacteriophage	holin	family,	superfamily	II-like
Nudix_N_2	PF14803.6	gi|336254208|ref|YP_004597315.1|	-	0.031	14.2	15.9	1.6	8.7	0.2	5.4	5	0	0	5	5	5	0	Nudix	N-terminal
NinG	PF05766.12	gi|336254208|ref|YP_004597315.1|	-	0.061	13.3	0.1	0.25	11.3	0.0	1.9	2	0	0	2	2	2	0	Bacteriophage	Lambda	NinG	protein
Phage_holin_2_3	PF16080.5	gi|336254208|ref|YP_004597315.1|	-	0.45	10.3	3.7	1.6	8.5	3.7	1.9	1	1	0	1	1	1	0	Bacteriophage	holin	family	HP1
Prok-RING_1	PF14446.6	gi|336254208|ref|YP_004597315.1|	-	0.69	9.9	13.5	0.28	11.1	1.7	3.5	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
Mut7-C	PF01927.16	gi|336254208|ref|YP_004597315.1|	-	0.81	9.8	0.0	0.81	9.8	0.0	2.1	2	0	0	2	2	2	0	Mut7-C	RNAse	domain
zinc-ribbon_6	PF10005.9	gi|336254208|ref|YP_004597315.1|	-	2.3	8.9	9.1	2.6	8.8	0.1	3.0	2	1	1	3	3	3	0	zinc-ribbon	domain
IBR	PF01485.21	gi|336254208|ref|YP_004597315.1|	-	3.2	8.0	11.4	1.3	9.3	6.0	2.8	3	1	0	3	3	3	0	IBR	domain,	a	half	RING-finger	domain
DUF1272	PF06906.11	gi|336254208|ref|YP_004597315.1|	-	4.5	7.4	12.0	6	7.0	8.5	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
PHF5	PF03660.14	gi|336254208|ref|YP_004597315.1|	-	4.8	7.4	12.0	8.6	6.6	2.4	3.0	2	1	0	2	2	2	0	PHF5-like	protein
C1_1	PF00130.22	gi|336254208|ref|YP_004597315.1|	-	5.1	7.1	10.8	29	4.6	3.8	3.7	2	2	1	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HypA	PF01155.19	gi|336254208|ref|YP_004597315.1|	-	6.4	6.8	12.7	2.5	8.1	2.2	3.1	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TPP_enzyme_C	PF02775.21	gi|336254209|ref|YP_004597316.1|	-	1.1e-31	109.6	0.1	1.7e-31	109.1	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|336254209|ref|YP_004597316.1|	-	0.0079	16.3	2.0	0.025	14.7	2.0	1.9	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
DUF2487	PF10673.9	gi|336254209|ref|YP_004597316.1|	-	0.071	13.1	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2487)
POR_N	PF01855.19	gi|336254210|ref|YP_004597317.1|	-	5.7e-50	170.2	0.0	1e-49	169.3	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|336254210|ref|YP_004597317.1|	-	6.6e-47	159.8	0.0	1.4e-46	158.8	0.0	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|336254210|ref|YP_004597317.1|	-	6.4e-12	45.7	0.0	1.2e-11	44.8	0.0	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_N	PF02776.18	gi|336254210|ref|YP_004597317.1|	-	0.00086	19.0	0.0	0.0017	18.0	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.20	gi|336254210|ref|YP_004597317.1|	-	0.0044	16.9	0.0	0.011	15.6	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
DUF1664	PF07889.12	gi|336254210|ref|YP_004597317.1|	-	0.14	12.2	0.1	1.3	9.1	0.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Usp	PF00582.26	gi|336254210|ref|YP_004597317.1|	-	0.17	12.4	0.2	0.84	10.1	0.0	2.3	2	0	0	2	2	2	0	Universal	stress	protein	family
OsmC	PF02566.19	gi|336254211|ref|YP_004597318.1|	-	1.1e-16	61.1	0.0	1.8e-16	60.4	0.0	1.3	1	0	0	1	1	1	1	OsmC-like	protein
Biotin_lipoyl	PF00364.22	gi|336254211|ref|YP_004597318.1|	-	8.5e-08	31.9	0.0	1.9e-07	30.8	0.0	1.6	2	0	0	2	2	2	1	Biotin-requiring	enzyme
HlyD_3	PF13437.6	gi|336254211|ref|YP_004597318.1|	-	0.014	16.0	0.3	0.12	13.1	0.1	2.4	2	1	1	3	3	3	0	HlyD	family	secretion	protein
Biotin_lipoyl_2	PF13533.6	gi|336254211|ref|YP_004597318.1|	-	0.049	13.5	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	Biotin-lipoyl	like
PHP	PF02811.19	gi|336254212|ref|YP_004597319.1|	-	2.1e-05	24.9	0.0	2.5e-05	24.6	0.0	1.3	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|336254212|ref|YP_004597319.1|	-	0.003	17.3	0.0	0.11	12.3	0.0	2.6	2	0	0	2	2	2	1	PHP-associated
Chorismate_synt	PF01264.21	gi|336254213|ref|YP_004597320.1|	-	1.2e-122	408.7	0.0	1.4e-122	408.5	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
HIT	PF01230.23	gi|336254214|ref|YP_004597321.1|	-	1.4e-17	64.2	0.0	1.7e-17	63.9	0.0	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|336254214|ref|YP_004597321.1|	-	3.6e-09	37.1	0.0	4.7e-09	36.7	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|336254214|ref|YP_004597321.1|	-	0.0006	19.7	0.0	0.00077	19.3	0.0	1.2	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
Phosphodiest	PF01663.22	gi|336254215|ref|YP_004597322.1|	-	2.4e-32	112.9	1.0	7e-32	111.4	1.0	1.6	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.12	gi|336254215|ref|YP_004597322.1|	-	1.8e-05	24.9	0.0	0.014	15.5	0.1	2.2	2	0	0	2	2	2	2	PglZ	domain
Sulfatase	PF00884.23	gi|336254215|ref|YP_004597322.1|	-	0.00011	21.8	0.3	0.38	10.1	0.0	2.2	2	0	0	2	2	2	2	Sulfatase
Alk_phosphatase	PF00245.20	gi|336254215|ref|YP_004597322.1|	-	0.0083	15.1	2.2	0.013	14.4	2.2	1.2	1	0	0	1	1	1	1	Alkaline	phosphatase
2_5_RNA_ligase2	PF13563.6	gi|336254215|ref|YP_004597322.1|	-	0.011	15.7	0.3	0.022	14.7	0.3	1.5	1	0	0	1	1	1	0	2'-5'	RNA	ligase	superfamily
Metalloenzyme	PF01676.18	gi|336254215|ref|YP_004597322.1|	-	0.073	12.4	0.3	0.2	11.0	0.2	1.7	2	0	0	2	2	2	0	Metalloenzyme	superfamily
YqjK	PF13997.6	gi|336254215|ref|YP_004597322.1|	-	0.2	11.9	0.5	0.43	10.9	0.5	1.5	1	0	0	1	1	1	0	YqjK-like	protein
EPSP_synthase	PF00275.20	gi|336254216|ref|YP_004597323.1|	-	9.5e-112	373.7	0.0	1.2e-111	373.5	0.0	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Cu_amine_oxidN1	PF07833.11	gi|336254216|ref|YP_004597323.1|	-	0.038	14.5	0.1	0.17	12.4	0.1	2.1	1	1	0	1	1	1	0	Copper	amine	oxidase	N-terminal	domain
DUF389	PF04087.14	gi|336254217|ref|YP_004597324.1|	-	2.1e-31	108.9	20.8	2.1e-31	108.9	20.8	2.3	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
CPP1-like	PF11833.8	gi|336254217|ref|YP_004597324.1|	-	2	8.1	13.1	0.18	11.5	1.6	2.8	1	1	2	3	3	3	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF2092	PF09865.9	gi|336254218|ref|YP_004597325.1|	-	0.038	13.3	0.0	0.79	9.0	0.0	2.6	2	1	1	3	3	3	0	Predicted	periplasmic	protein	(DUF2092)
LolA_like	PF17131.4	gi|336254218|ref|YP_004597325.1|	-	0.098	12.4	0.0	0.5	10.1	0.0	1.9	1	1	0	1	1	1	0	Outer	membrane	lipoprotein-sorting	protein
Peptidase_M24	PF00557.24	gi|336254219|ref|YP_004597326.1|	-	1.9e-51	174.7	0.4	2.6e-51	174.3	0.4	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|336254219|ref|YP_004597326.1|	-	3.9e-08	34.0	0.0	7.5e-08	33.1	0.0	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Trypsin_2	PF13365.6	gi|336254220|ref|YP_004597327.1|	-	2.4e-27	96.7	4.0	4.6e-27	95.8	4.0	1.5	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|336254220|ref|YP_004597327.1|	-	5.7e-15	55.4	0.2	1.3e-14	54.3	0.2	1.6	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|336254220|ref|YP_004597327.1|	-	4.9e-12	46.1	0.4	2e-11	44.2	0.4	1.8	1	1	0	1	1	1	1	Trypsin
PDZ_6	PF17820.1	gi|336254220|ref|YP_004597327.1|	-	0.0049	16.7	0.9	0.01	15.7	0.0	2.0	2	0	0	2	2	2	1	PDZ	domain
TAT_signal	PF10518.9	gi|336254220|ref|YP_004597327.1|	-	0.03	14.2	1.2	0.086	12.7	1.2	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Amino_oxidase	PF01593.24	gi|336254221|ref|YP_004597328.1|	-	8.8e-17	61.5	0.8	1.4e-08	34.5	0.1	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|336254221|ref|YP_004597328.1|	-	1.2e-15	57.4	0.2	3e-15	56.2	0.2	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336254221|ref|YP_004597328.1|	-	0.00019	21.2	7.9	0.00032	20.4	5.5	2.1	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|336254221|ref|YP_004597328.1|	-	0.034	13.4	0.4	0.061	12.5	0.4	1.4	1	0	0	1	1	1	0	Thi4	family
Pyr_redox_2	PF07992.14	gi|336254221|ref|YP_004597328.1|	-	0.054	12.7	2.2	0.82	8.8	0.9	2.5	2	1	1	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF2285	PF10074.9	gi|336254221|ref|YP_004597328.1|	-	0.11	13.1	3.5	15	6.3	0.0	3.0	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2285)
Pyr_redox	PF00070.27	gi|336254221|ref|YP_004597328.1|	-	0.13	12.9	0.5	11	6.7	0.2	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|336254221|ref|YP_004597328.1|	-	0.15	12.0	0.5	1.1	9.3	0.5	2.1	1	1	0	1	1	1	0	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|336254221|ref|YP_004597328.1|	-	0.2	10.7	9.0	0.65	9.0	1.9	2.8	2	1	0	3	3	3	0	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|336254221|ref|YP_004597328.1|	-	0.23	10.2	0.9	0.4	9.5	0.9	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
HTH_20	PF12840.7	gi|336254222|ref|YP_004597329.1|	-	0.11	12.6	1.8	1.7	8.7	1.8	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254223|ref|YP_004597330.1|	-	1.5e-13	50.1	0.1	2.8e-13	49.2	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336254223|ref|YP_004597330.1|	-	4.5e-12	45.6	1.5	1.2e-11	44.3	1.5	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336254223|ref|YP_004597330.1|	-	2.3e-08	33.8	0.1	6.1e-08	32.5	0.0	1.7	2	0	0	2	2	1	1	HTH	domain
MarR_2	PF12802.7	gi|336254223|ref|YP_004597330.1|	-	4.2e-06	26.6	0.0	9.6e-06	25.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336254223|ref|YP_004597330.1|	-	5e-06	26.5	1.2	1.5e-05	25.0	0.0	2.3	3	1	0	3	3	2	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|336254223|ref|YP_004597330.1|	-	1.3e-05	24.8	2.5	0.00018	21.1	0.1	2.6	3	0	0	3	3	3	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336254223|ref|YP_004597330.1|	-	4e-05	23.7	0.0	8.1e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_30	PF13556.6	gi|336254223|ref|YP_004597330.1|	-	0.00023	20.9	0.1	0.00055	19.7	0.1	1.6	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_28	PF13518.6	gi|336254223|ref|YP_004597330.1|	-	0.00034	20.7	0.0	0.0007	19.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254223|ref|YP_004597330.1|	-	0.00061	19.6	0.0	0.0021	17.9	0.0	1.8	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|336254223|ref|YP_004597330.1|	-	0.00091	19.0	0.1	0.0022	17.7	0.0	1.7	2	0	0	2	2	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|336254223|ref|YP_004597330.1|	-	0.0012	18.7	0.0	0.0031	17.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_10	PF04967.12	gi|336254223|ref|YP_004597330.1|	-	0.0019	17.9	0.1	0.0043	16.8	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_23	PF13384.6	gi|336254223|ref|YP_004597330.1|	-	0.0027	17.4	0.1	0.0085	15.9	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|336254223|ref|YP_004597330.1|	-	0.003	17.5	0.0	0.0056	16.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
Sigma70_r4_2	PF08281.12	gi|336254223|ref|YP_004597330.1|	-	0.0051	16.4	0.1	0.014	15.0	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
AsnC_trans_reg	PF01037.21	gi|336254223|ref|YP_004597330.1|	-	0.01	15.7	0.2	0.02	14.9	0.2	1.4	1	0	0	1	1	1	0	Lrp/AsnC	ligand	binding	domain
Sigma70_r3	PF04539.16	gi|336254223|ref|YP_004597330.1|	-	0.012	15.7	0.2	0.079	13.1	0.0	2.2	2	0	0	2	2	2	0	Sigma-70	region	3
GntR	PF00392.21	gi|336254223|ref|YP_004597330.1|	-	0.019	14.6	1.2	0.046	13.4	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Tnp_ISL3	PF13542.6	gi|336254223|ref|YP_004597330.1|	-	0.019	14.3	0.0	0.041	13.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_8	PF02954.19	gi|336254223|ref|YP_004597330.1|	-	0.022	14.5	0.0	0.064	13.1	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_Mga	PF08280.11	gi|336254223|ref|YP_004597330.1|	-	0.029	14.4	0.0	0.067	13.2	0.0	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_1	PF00126.27	gi|336254223|ref|YP_004597330.1|	-	0.034	14.1	0.0	0.089	12.8	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_38	PF13936.6	gi|336254223|ref|YP_004597330.1|	-	0.044	13.5	0.0	0.11	12.3	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336254223|ref|YP_004597330.1|	-	0.045	13.7	0.2	0.1	12.6	0.0	1.7	2	0	0	2	2	1	0	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|336254223|ref|YP_004597330.1|	-	0.05	14.0	0.0	0.13	12.6	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_17	PF12728.7	gi|336254223|ref|YP_004597330.1|	-	0.07	13.3	0.1	0.27	11.4	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|336254223|ref|YP_004597330.1|	-	0.075	12.8	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	MerR	family	regulatory	protein
PaaX	PF07848.12	gi|336254223|ref|YP_004597330.1|	-	0.076	13.2	0.0	0.14	12.4	0.0	1.4	1	0	0	1	1	1	0	PaaX-like	protein
LexA_DNA_bind	PF01726.16	gi|336254223|ref|YP_004597330.1|	-	0.08	12.7	0.1	0.37	10.6	0.0	2.0	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_3	PF01381.22	gi|336254223|ref|YP_004597330.1|	-	0.12	12.5	0.0	0.25	11.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
HTH_36	PF13730.6	gi|336254223|ref|YP_004597330.1|	-	0.21	11.6	0.0	0.37	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Acetyltransf_1	PF00583.25	gi|336254224|ref|YP_004597331.1|	-	4e-14	52.9	0.1	7.1e-14	52.1	0.1	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|336254224|ref|YP_004597331.1|	-	1.6e-08	34.8	0.0	2.9e-08	34.0	0.0	1.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336254224|ref|YP_004597331.1|	-	1.1e-07	32.1	0.0	2.6e-07	31.0	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336254224|ref|YP_004597331.1|	-	3e-05	24.0	0.0	6.3e-05	22.9	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336254224|ref|YP_004597331.1|	-	4.8e-05	23.4	0.1	0.0017	18.4	0.0	2.4	1	1	1	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.7	gi|336254224|ref|YP_004597331.1|	-	0.00028	21.5	0.1	0.00049	20.8	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|336254224|ref|YP_004597331.1|	-	0.004	17.3	0.7	0.0098	16.0	0.7	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336254224|ref|YP_004597331.1|	-	0.018	15.1	0.0	0.054	13.6	0.0	1.9	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|336254224|ref|YP_004597331.1|	-	0.15	11.8	1.1	0.42	10.4	0.6	1.9	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain,	PanZ
PDH	PF02153.17	gi|336254225|ref|YP_004597332.1|	-	6.3e-11	41.8	0.7	1.3e-09	37.5	0.7	2.1	1	1	0	1	1	1	1	Prephenate	dehydrogenase
F420_oxidored	PF03807.17	gi|336254225|ref|YP_004597332.1|	-	7.8e-05	23.2	5.2	0.00027	21.5	0.3	2.7	3	0	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|336254225|ref|YP_004597332.1|	-	0.02	15.7	2.5	0.02	15.7	0.3	2.2	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Methyltransf_12	PF08242.12	gi|336254226|ref|YP_004597333.1|	-	3e-11	43.9	0.0	6.9e-11	42.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254226|ref|YP_004597333.1|	-	1.1e-09	38.4	0.0	1.8e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Rsm22	PF09243.10	gi|336254226|ref|YP_004597333.1|	-	6.2e-05	22.4	0.0	0.0001	21.7	0.0	1.2	1	0	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
Methyltransf_11	PF08241.12	gi|336254226|ref|YP_004597333.1|	-	6.7e-05	23.5	0.1	0.00043	20.9	0.0	2.4	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336254226|ref|YP_004597333.1|	-	0.00026	21.6	0.0	0.00098	19.8	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254226|ref|YP_004597333.1|	-	0.0012	18.7	0.0	0.017	14.9	0.0	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
PBP_like_2	PF12849.7	gi|336254227|ref|YP_004597334.1|	-	1.2e-07	31.7	0.1	2.2e-07	30.8	0.0	1.4	1	1	0	1	1	1	1	PBP	superfamily	domain
SurE	PF01975.17	gi|336254228|ref|YP_004597335.1|	-	2.9e-48	164.2	0.1	3.6e-48	163.9	0.1	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
Rdx	PF10262.9	gi|336254229|ref|YP_004597336.1|	-	1.7e-18	66.5	0.0	2e-18	66.3	0.0	1.0	1	0	0	1	1	1	1	Rdx	family
EAP30	PF04157.16	gi|336254230|ref|YP_004597337.1|	-	0.0037	16.6	0.2	0.0046	16.3	0.2	1.2	1	0	0	1	1	1	1	EAP30/Vps36	family
DUF1328	PF07043.13	gi|336254231|ref|YP_004597338.1|	-	1.3e-13	50.9	20.1	1.5e-13	50.7	20.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1328)
Nop14	PF04147.12	gi|336254232|ref|YP_004597339.1|	-	5.4	5.1	17.5	5.5	5.1	17.5	1.0	1	0	0	1	1	1	0	Nop14-like	family
TAT_signal	PF10518.9	gi|336254233|ref|YP_004597340.1|	-	0.00018	21.2	0.2	0.00027	20.6	0.2	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336254233|ref|YP_004597340.1|	-	0.0066	15.8	0.7	0.015	14.6	0.7	1.6	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Ribosomal_S13_N	PF08069.12	gi|336254234|ref|YP_004597341.1|	-	1.5e-21	76.2	0.0	2.4e-21	75.5	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|336254234|ref|YP_004597341.1|	-	3.1e-15	56.1	0.4	4.7e-15	55.6	0.4	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S15
DUF1465	PF07323.12	gi|336254234|ref|YP_004597341.1|	-	0.074	12.9	0.3	0.13	12.1	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1465)
NLBH	PF05211.12	gi|336254236|ref|YP_004597343.1|	-	0.0097	15.5	0.3	0.011	15.4	0.3	1.0	1	0	0	1	1	1	1	Neuraminyllactose-binding	hemagglutinin	precursor	(NLBH)
DUF4604	PF15377.6	gi|336254236|ref|YP_004597343.1|	-	0.17	12.3	2.4	0.27	11.7	2.4	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4604)
Ribosomal_S3Ae	PF01015.18	gi|336254237|ref|YP_004597344.1|	-	2.7e-60	203.4	0.2	3.3e-60	203.1	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
FlaG	PF03646.15	gi|336254237|ref|YP_004597344.1|	-	0.24	11.6	0.1	0.24	11.6	0.1	2.4	3	0	0	3	3	3	0	FlaG	protein
Acetyltransf_1	PF00583.25	gi|336254238|ref|YP_004597345.1|	-	2.6e-07	30.9	0.0	3.4e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336254238|ref|YP_004597345.1|	-	3.5e-07	30.2	0.0	4.3e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336254238|ref|YP_004597345.1|	-	8.2e-07	29.4	0.0	1.1e-06	29.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336254238|ref|YP_004597345.1|	-	0.039	14.1	0.0	0.053	13.7	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
TruD	PF01142.18	gi|336254239|ref|YP_004597346.1|	-	1e-166	554.9	0.0	1.2e-166	554.7	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
EcoEI_R_C	PF08463.10	gi|336254239|ref|YP_004597346.1|	-	0.15	12.2	0.0	0.28	11.3	0.0	1.4	1	0	0	1	1	1	0	EcoEI	R	protein	C-terminal
Spore_III_AB	PF09548.10	gi|336254239|ref|YP_004597346.1|	-	0.17	12.0	0.6	0.59	10.2	0.3	1.8	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
PTH2	PF01981.16	gi|336254240|ref|YP_004597347.1|	-	1e-40	138.7	0.0	1.1e-40	138.6	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
DCD	PF06559.11	gi|336254242|ref|YP_004597349.1|	-	1.3e-16	60.3	0.0	3.5e-14	52.4	0.0	2.1	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
dUTPase	PF00692.19	gi|336254242|ref|YP_004597349.1|	-	1.7e-13	50.3	0.0	2.5e-13	49.8	0.0	1.2	1	0	0	1	1	1	1	dUTPase
ThiP_synth	PF10120.9	gi|336254244|ref|YP_004597351.1|	-	1.2e-53	181.2	0.2	1.7e-53	180.6	0.2	1.3	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|336254244|ref|YP_004597351.1|	-	1.2e-07	31.6	0.0	2.8e-07	30.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
Sigma70_r4	PF04545.16	gi|336254244|ref|YP_004597351.1|	-	0.0001	21.7	0.1	0.00026	20.4	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_31	PF13560.6	gi|336254244|ref|YP_004597351.1|	-	0.00014	22.1	2.0	0.00029	21.1	0.4	2.4	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|336254244|ref|YP_004597351.1|	-	0.00034	20.5	0.0	0.00069	19.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254244|ref|YP_004597351.1|	-	0.00046	19.7	0.0	0.0015	18.1	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|336254244|ref|YP_004597351.1|	-	0.00055	19.6	0.1	0.0014	18.3	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|336254244|ref|YP_004597351.1|	-	0.00076	19.2	0.0	0.0021	17.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|336254244|ref|YP_004597351.1|	-	0.0011	18.8	0.3	0.0056	16.5	0.0	2.3	2	0	0	2	2	2	1	MarR	family
YdaS_antitoxin	PF15943.5	gi|336254244|ref|YP_004597351.1|	-	0.014	15.2	0.0	0.037	13.9	0.0	1.8	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
P22_Cro	PF14549.6	gi|336254244|ref|YP_004597351.1|	-	0.017	15.0	0.0	0.05	13.5	0.0	1.8	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
HTH_19	PF12844.7	gi|336254244|ref|YP_004597351.1|	-	0.037	14.1	0.0	0.078	13.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336254244|ref|YP_004597351.1|	-	0.039	13.7	0.7	0.48	10.3	0.0	2.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_17	PF12728.7	gi|336254244|ref|YP_004597351.1|	-	0.046	13.9	0.0	0.13	12.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|336254244|ref|YP_004597351.1|	-	0.056	13.9	0.0	0.11	12.9	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_28	PF13518.6	gi|336254244|ref|YP_004597351.1|	-	0.063	13.4	1.8	0.3	11.2	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254244|ref|YP_004597351.1|	-	0.069	13.0	2.0	0.074	12.9	0.1	2.1	3	0	0	3	3	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.6	gi|336254244|ref|YP_004597351.1|	-	0.11	12.2	0.0	0.27	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HNF-1_N	PF04814.13	gi|336254244|ref|YP_004597351.1|	-	0.15	12.7	0.1	0.5	11.0	0.0	1.8	2	0	0	2	2	2	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
HTH_7	PF02796.15	gi|336254244|ref|YP_004597351.1|	-	0.15	12.2	0.0	0.35	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Methyltransf_11	PF08241.12	gi|336254245|ref|YP_004597352.1|	-	2.6e-10	40.8	0.0	9.3e-07	29.4	0.0	2.3	1	1	0	2	2	2	2	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254245|ref|YP_004597352.1|	-	4.3e-10	39.7	0.0	5.3e-10	39.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336254245|ref|YP_004597352.1|	-	2.6e-09	37.7	0.0	7.5e-09	36.2	0.0	1.8	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254245|ref|YP_004597352.1|	-	1.9e-08	34.3	0.0	3.5e-08	33.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336254245|ref|YP_004597352.1|	-	1.6e-07	32.0	0.0	3.1e-07	31.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336254245|ref|YP_004597352.1|	-	2e-05	24.5	0.0	3e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FtsJ	PF01728.19	gi|336254245|ref|YP_004597352.1|	-	0.00012	22.3	0.0	0.00018	21.6	0.0	1.3	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Ubie_methyltran	PF01209.18	gi|336254245|ref|YP_004597352.1|	-	0.0016	17.8	0.0	0.0024	17.3	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
GCD14	PF08704.10	gi|336254245|ref|YP_004597352.1|	-	0.08	12.6	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_4	PF02390.17	gi|336254245|ref|YP_004597352.1|	-	0.13	11.7	0.0	0.2	11.1	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
Fibrillarin	PF01269.17	gi|336254245|ref|YP_004597352.1|	-	0.17	11.0	0.0	0.26	10.4	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
4HBT	PF03061.22	gi|336254246|ref|YP_004597353.1|	-	2.7e-14	53.3	0.1	4.1e-14	52.7	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|336254246|ref|YP_004597353.1|	-	2.9e-14	53.0	0.1	1.7e-06	27.5	0.0	2.0	1	1	1	2	2	2	2	Acyl-ACP	thioesterase
4HBT_2	PF13279.6	gi|336254246|ref|YP_004597353.1|	-	3.1e-13	50.3	0.0	3.9e-13	50.0	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT_3	PF13622.6	gi|336254246|ref|YP_004597353.1|	-	0.097	12.9	0.0	0.11	12.7	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
Abhydrolase_1	PF00561.20	gi|336254247|ref|YP_004597354.1|	-	5.7e-31	108.1	0.1	7e-29	101.2	0.1	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336254247|ref|YP_004597354.1|	-	3.3e-19	69.1	0.1	7.1e-18	64.7	0.1	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|336254247|ref|YP_004597354.1|	-	3e-18	67.2	0.5	3.7e-18	67.0	0.5	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S15	PF02129.18	gi|336254247|ref|YP_004597354.1|	-	0.0069	16.0	0.2	0.064	12.8	0.2	2.1	1	1	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_4	PF08386.10	gi|336254247|ref|YP_004597354.1|	-	0.022	14.9	0.0	0.037	14.1	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
FSH1	PF03959.13	gi|336254247|ref|YP_004597354.1|	-	0.051	13.2	0.0	2	8.0	0.0	2.7	2	1	0	2	2	2	0	Serine	hydrolase	(FSH1)
DUF1057	PF06342.12	gi|336254247|ref|YP_004597354.1|	-	0.098	11.7	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
DLH	PF01738.18	gi|336254247|ref|YP_004597354.1|	-	0.18	11.3	0.0	2.9	7.4	0.0	2.1	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Abhydrolase_2	PF02230.16	gi|336254247|ref|YP_004597354.1|	-	0.2	11.5	0.1	1.3	8.8	0.0	2.2	3	0	0	3	3	3	0	Phospholipase/Carboxylesterase
DUF5059	PF16502.5	gi|336254249|ref|YP_004597356.1|	-	5.8e-89	299.5	55.8	5.2e-66	223.7	37.3	2.4	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF5059)
Copper-bind	PF00127.20	gi|336254249|ref|YP_004597356.1|	-	1.2e-09	38.5	0.0	3e-09	37.2	0.0	1.7	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|336254249|ref|YP_004597356.1|	-	0.071	13.2	0.1	0.37	10.9	0.1	2.0	1	1	0	1	1	1	0	Cupredoxin-like	domain
AAA	PF00004.29	gi|336254250|ref|YP_004597357.1|	-	1.3e-79	265.1	0.0	6.3e-39	133.4	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|336254250|ref|YP_004597357.1|	-	8.6e-11	41.8	0.0	0.00049	19.9	0.0	2.6	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_lid_3	PF17862.1	gi|336254250|ref|YP_004597357.1|	-	5.4e-10	38.9	3.7	0.00041	20.1	0.2	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
AAA_5	PF07728.14	gi|336254250|ref|YP_004597357.1|	-	1.1e-09	38.4	0.0	0.00038	20.5	0.0	3.2	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.14	gi|336254250|ref|YP_004597357.1|	-	9.9e-09	35.5	0.0	0.00094	19.3	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.6	gi|336254250|ref|YP_004597357.1|	-	1e-08	35.5	0.0	0.0052	16.9	0.0	3.7	3	1	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|336254250|ref|YP_004597357.1|	-	1.2e-08	35.6	11.8	0.0033	17.8	0.7	5.3	4	2	0	4	4	3	2	AAA	ATPase	domain
AAA_18	PF13238.6	gi|336254250|ref|YP_004597357.1|	-	7.7e-08	33.0	0.0	0.011	16.3	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|336254250|ref|YP_004597357.1|	-	1.8e-07	31.5	0.7	0.055	13.8	0.0	3.7	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|336254250|ref|YP_004597357.1|	-	2.5e-07	30.8	0.0	0.035	14.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|336254250|ref|YP_004597357.1|	-	2.7e-07	30.5	0.4	0.026	14.3	0.2	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|336254250|ref|YP_004597357.1|	-	1.8e-06	28.3	0.0	0.081	13.3	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
NACHT	PF05729.12	gi|336254250|ref|YP_004597357.1|	-	1.4e-05	25.1	0.6	2.9	7.8	0.0	4.3	2	2	2	4	4	4	1	NACHT	domain
Viral_helicase1	PF01443.18	gi|336254250|ref|YP_004597357.1|	-	5e-05	23.2	0.0	0.088	12.5	0.0	2.2	2	0	0	2	2	2	2	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.6	gi|336254250|ref|YP_004597357.1|	-	5.7e-05	23.0	0.1	0.18	11.6	0.0	2.5	3	0	0	3	3	2	2	AAA	domain
AAA_28	PF13521.6	gi|336254250|ref|YP_004597357.1|	-	7.6e-05	23.0	0.5	1.9	8.7	0.0	4.2	3	1	1	4	4	3	2	AAA	domain
AAA_17	PF13207.6	gi|336254250|ref|YP_004597357.1|	-	9.1e-05	22.9	0.2	0.79	10.2	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|336254250|ref|YP_004597357.1|	-	0.0001	21.7	0.4	0.38	10.1	0.0	2.8	3	0	0	3	3	2	2	Magnesium	chelatase,	subunit	ChlI
Rad17	PF03215.15	gi|336254250|ref|YP_004597357.1|	-	0.00013	21.9	0.0	0.48	10.3	0.0	2.3	2	0	0	2	2	2	2	Rad17	P-loop	domain
TIP49	PF06068.13	gi|336254250|ref|YP_004597357.1|	-	0.00029	20.2	0.0	0.58	9.3	0.0	2.2	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_3	PF07726.11	gi|336254250|ref|YP_004597357.1|	-	0.00073	19.4	0.0	0.8	9.6	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|336254250|ref|YP_004597357.1|	-	0.00078	18.8	0.1	1.2	8.4	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
AAA_24	PF13479.6	gi|336254250|ref|YP_004597357.1|	-	0.0011	18.8	0.0	0.81	9.4	0.0	3.1	3	0	0	3	3	3	1	AAA	domain
ABC_tran	PF00005.27	gi|336254250|ref|YP_004597357.1|	-	0.0014	19.2	0.0	2.5	8.6	0.0	2.7	2	1	0	2	2	2	1	ABC	transporter
SKI	PF01202.22	gi|336254250|ref|YP_004597357.1|	-	0.0033	17.6	0.0	3	7.9	0.0	2.7	2	0	0	2	2	2	1	Shikimate	kinase
Hydin_ADK	PF17213.3	gi|336254250|ref|YP_004597357.1|	-	0.0049	17.2	0.2	2.2	8.5	0.0	2.4	2	0	0	2	2	2	1	Hydin	Adenylate	kinase-like	domain
TsaE	PF02367.17	gi|336254250|ref|YP_004597357.1|	-	0.0052	16.8	0.0	3	7.9	0.0	2.4	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Cytidylate_kin	PF02224.18	gi|336254250|ref|YP_004597357.1|	-	0.008	15.9	0.2	3.6	7.3	0.0	2.6	3	0	0	3	3	2	1	Cytidylate	kinase
AAA_7	PF12775.7	gi|336254250|ref|YP_004597357.1|	-	0.01	15.4	0.0	4.5	6.7	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|336254250|ref|YP_004597357.1|	-	0.01	15.4	6.3	3.1	7.3	0.1	4.4	2	2	1	4	4	4	0	AAA	domain
Sigma54_activ_2	PF14532.6	gi|336254250|ref|YP_004597357.1|	-	0.011	15.8	0.0	3	8.0	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Bac_DnaA	PF00308.18	gi|336254250|ref|YP_004597357.1|	-	0.013	15.3	0.0	13	5.5	0.0	3.3	3	1	0	3	3	3	0	Bacterial	dnaA	protein
Cytidylate_kin2	PF13189.6	gi|336254250|ref|YP_004597357.1|	-	0.015	15.5	0.0	2.2	8.3	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Sigma54_activat	PF00158.26	gi|336254250|ref|YP_004597357.1|	-	0.017	14.8	0.1	28	4.4	0.0	3.7	4	0	0	4	4	4	0	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|336254250|ref|YP_004597357.1|	-	0.029	14.7	0.3	18	5.7	0.0	2.9	3	0	0	3	3	2	0	AAA	domain
ATPase_2	PF01637.18	gi|336254250|ref|YP_004597357.1|	-	0.037	14.0	0.0	9.1	6.1	0.1	3.1	2	1	1	3	3	3	0	ATPase	domain	predominantly	from	Archaea
GLTSCR1	PF15249.6	gi|336254250|ref|YP_004597357.1|	-	0.062	13.7	0.8	0.43	11.0	0.0	2.5	3	0	0	3	3	2	0	Conserved	region	of	unknown	function	on	GLTSCR	protein
SMC_N	PF02463.19	gi|336254250|ref|YP_004597357.1|	-	0.12	11.8	0.6	38	3.6	0.0	3.7	4	0	0	4	4	4	0	RecF/RecN/SMC	N	terminal	domain
ATPase	PF06745.13	gi|336254250|ref|YP_004597357.1|	-	0.22	10.8	0.1	34	3.7	0.0	2.8	3	0	0	3	3	3	0	KaiC
Adeno_IVa2	PF02456.15	gi|336254250|ref|YP_004597357.1|	-	0.26	10.0	0.1	3.6	6.3	0.0	2.1	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
Parvo_NS1	PF01057.17	gi|336254250|ref|YP_004597357.1|	-	0.27	10.3	0.1	9.4	5.2	0.1	2.1	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
PhoH	PF02562.16	gi|336254250|ref|YP_004597357.1|	-	0.67	9.4	1.8	22	4.4	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
Thi4	PF01946.17	gi|336254251|ref|YP_004597358.1|	-	2.2e-60	203.8	0.3	1.8e-48	164.8	0.2	2.2	2	0	0	2	2	2	2	Thi4	family
FAD_oxidored	PF12831.7	gi|336254251|ref|YP_004597358.1|	-	2.9e-11	43.4	0.2	4.5e-11	42.7	0.2	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336254251|ref|YP_004597358.1|	-	5e-11	42.3	0.2	7.7e-08	31.8	0.2	2.3	1	1	1	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|336254251|ref|YP_004597358.1|	-	3.4e-10	40.1	0.4	1.2e-05	25.0	0.2	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336254251|ref|YP_004597358.1|	-	1.5e-09	37.6	0.0	3.1e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|336254251|ref|YP_004597358.1|	-	2.3e-08	34.2	0.1	4.8e-08	33.1	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|336254251|ref|YP_004597358.1|	-	3.2e-08	33.2	0.1	7.5e-08	31.9	0.0	1.7	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336254251|ref|YP_004597358.1|	-	5.2e-07	28.7	0.0	7.2e-07	28.3	0.0	1.2	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|336254251|ref|YP_004597358.1|	-	4.3e-05	22.9	0.0	8.7e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336254251|ref|YP_004597358.1|	-	0.0002	20.5	0.1	0.0096	15.0	0.0	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|336254251|ref|YP_004597358.1|	-	0.0002	21.8	0.7	0.00054	20.5	0.2	2.0	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|336254251|ref|YP_004597358.1|	-	0.00029	19.8	0.1	0.075	11.9	0.1	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Shikimate_DH	PF01488.20	gi|336254251|ref|YP_004597358.1|	-	0.0007	19.7	0.0	0.06	13.4	0.0	2.3	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Amino_oxidase	PF01593.24	gi|336254251|ref|YP_004597358.1|	-	0.00077	18.9	0.0	0.0028	17.0	0.0	1.8	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.22	gi|336254251|ref|YP_004597358.1|	-	0.0012	18.0	0.1	0.0021	17.2	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|336254251|ref|YP_004597358.1|	-	0.0016	18.8	0.0	0.0038	17.7	0.0	1.7	1	1	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|336254251|ref|YP_004597358.1|	-	0.0022	18.0	0.2	0.0067	16.4	0.1	1.8	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Glu_dehyd_C	PF16912.5	gi|336254251|ref|YP_004597358.1|	-	0.0033	16.9	0.1	0.75	9.2	0.1	2.5	2	0	0	2	2	2	1	Glucose	dehydrogenase	C-terminus
TrkA_N	PF02254.18	gi|336254251|ref|YP_004597358.1|	-	0.025	14.9	0.3	0.056	13.7	0.1	1.8	2	0	0	2	2	2	0	TrkA-N	domain
NMO	PF03060.15	gi|336254251|ref|YP_004597358.1|	-	0.13	11.6	1.7	0.19	11.1	0.5	1.8	2	0	0	2	2	2	0	Nitronate	monooxygenase
Copper-bind	PF00127.20	gi|336254253|ref|YP_004597360.1|	-	3.6e-14	53.0	0.1	7.8e-14	51.9	0.1	1.5	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|336254253|ref|YP_004597360.1|	-	0.00092	19.3	0.0	0.39	10.9	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
ERO1	PF04137.15	gi|336254253|ref|YP_004597360.1|	-	0.25	10.5	0.0	0.29	10.3	0.0	1.0	1	0	0	1	1	1	0	Endoplasmic	Reticulum	Oxidoreductin	1	(ERO1)
CDP-OH_P_transf	PF01066.21	gi|336254254|ref|YP_004597361.1|	-	1.2e-10	42.0	3.6	1.2e-10	42.0	3.6	2.8	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
HEAT_2	PF13646.6	gi|336254255|ref|YP_004597362.1|	-	2.9e-20	72.4	7.7	3.3e-13	49.8	5.3	3.6	1	1	2	3	3	3	3	HEAT	repeats
HEAT_PBS	PF03130.16	gi|336254255|ref|YP_004597362.1|	-	2.2e-17	61.9	7.8	4.4e-06	26.9	0.3	6.0	5	0	0	5	5	5	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|336254255|ref|YP_004597362.1|	-	1.8e-06	27.7	0.2	0.062	13.6	0.1	3.3	3	0	0	3	3	3	2	HEAT	repeat
HEAT_EZ	PF13513.6	gi|336254255|ref|YP_004597362.1|	-	7.6e-06	26.3	3.7	0.011	16.2	0.1	3.4	2	1	1	3	3	3	2	HEAT-like	repeat
HsbA	PF12296.8	gi|336254255|ref|YP_004597362.1|	-	0.0017	18.7	0.0	3.1	8.2	0.0	3.3	3	0	0	3	3	3	2	Hydrophobic	surface	binding	protein	A
AATF-Che1	PF13339.6	gi|336254255|ref|YP_004597362.1|	-	0.0044	17.7	3.3	0.01	16.5	3.3	1.6	1	0	0	1	1	1	1	Apoptosis	antagonizing	transcription	factor
Arm	PF00514.23	gi|336254255|ref|YP_004597362.1|	-	0.019	15.0	0.0	1.7	8.8	0.0	3.1	1	1	2	3	3	3	0	Armadillo/beta-catenin-like	repeat
LPP	PF04728.13	gi|336254255|ref|YP_004597362.1|	-	0.049	14.0	3.3	2.6	8.5	1.0	3.3	2	1	0	2	2	2	0	Lipoprotein	leucine-zipper
FlxA	PF14282.6	gi|336254255|ref|YP_004597362.1|	-	0.087	12.8	2.2	0.27	11.2	1.7	2.0	1	1	1	2	2	2	0	FlxA-like	protein
NPV_P10	PF05531.12	gi|336254255|ref|YP_004597362.1|	-	0.13	12.8	0.5	0.13	12.8	0.5	3.3	4	0	0	4	4	4	0	Nucleopolyhedrovirus	P10	protein
Cytochrom_B562	PF07361.11	gi|336254255|ref|YP_004597362.1|	-	0.13	12.9	0.7	9.4	7.0	0.2	2.9	2	1	1	3	3	3	0	Cytochrome	b562
FlaG	PF03646.15	gi|336254255|ref|YP_004597362.1|	-	1.9	8.7	9.2	7.3	6.8	1.8	2.7	2	0	0	2	2	2	0	FlaG	protein
Lactamase_B_3	PF13483.6	gi|336254256|ref|YP_004597363.1|	-	2.8e-28	98.8	0.1	4.5e-28	98.2	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|336254256|ref|YP_004597363.1|	-	4.3e-09	36.2	0.3	5.6e-09	35.8	0.3	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
PLDc_2	PF13091.6	gi|336254257|ref|YP_004597364.1|	-	5.7e-40	136.3	0.0	7.9e-23	80.8	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.22	gi|336254257|ref|YP_004597364.1|	-	1.9e-08	34.1	0.1	7.6e-06	25.9	0.1	2.6	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
Regulator_TrmB	PF11495.8	gi|336254257|ref|YP_004597364.1|	-	4.3e-06	26.1	0.1	0.073	12.2	0.1	2.4	2	0	0	2	2	2	2	Archaeal	transcriptional	regulator	TrmB
FAM83	PF07894.12	gi|336254257|ref|YP_004597364.1|	-	0.015	14.9	0.0	0.21	11.1	0.0	2.1	2	0	0	2	2	2	0	FAM83	A-H
Fe_dep_repress	PF01325.19	gi|336254258|ref|YP_004597365.1|	-	2.6e-17	62.8	0.1	5.7e-17	61.7	0.1	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|336254258|ref|YP_004597365.1|	-	1.5e-13	50.6	0.9	3.2e-13	49.6	0.5	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_Crp_2	PF13545.6	gi|336254258|ref|YP_004597365.1|	-	0.00012	22.0	0.0	0.00018	21.4	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|336254258|ref|YP_004597365.1|	-	0.00014	21.7	0.0	0.00023	21.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336254258|ref|YP_004597365.1|	-	0.00017	21.4	0.0	0.00035	20.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336254258|ref|YP_004597365.1|	-	0.00031	20.7	0.0	0.00073	19.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336254258|ref|YP_004597365.1|	-	0.00035	20.4	0.0	0.00058	19.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|336254258|ref|YP_004597365.1|	-	0.00088	18.8	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|336254258|ref|YP_004597365.1|	-	0.0011	19.4	0.0	0.0021	18.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|336254258|ref|YP_004597365.1|	-	0.0037	17.6	0.0	0.0057	17.0	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_12	PF08461.10	gi|336254258|ref|YP_004597365.1|	-	0.0054	16.6	0.2	0.011	15.6	0.2	1.6	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_5	PF01022.20	gi|336254258|ref|YP_004597365.1|	-	0.018	14.9	0.0	0.15	11.9	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|336254258|ref|YP_004597365.1|	-	0.019	14.6	0.0	0.052	13.2	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DS	PF01916.17	gi|336254258|ref|YP_004597365.1|	-	0.072	12.3	0.1	0.084	12.1	0.1	1.1	1	0	0	1	1	1	0	Deoxyhypusine	synthase
Rio2_N	PF09202.11	gi|336254258|ref|YP_004597365.1|	-	0.1	12.8	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_11	PF08279.12	gi|336254258|ref|YP_004597365.1|	-	0.11	12.5	0.0	0.23	11.4	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
DUF4423	PF14394.6	gi|336254258|ref|YP_004597365.1|	-	0.11	12.2	0.0	0.18	11.5	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
YkyA	PF10368.9	gi|336254259|ref|YP_004597366.1|	-	0.0022	17.7	7.8	0.0034	17.1	7.1	1.7	1	1	1	2	2	2	2	Putative	cell-wall	binding	lipoprotein
DUF4226	PF10774.9	gi|336254259|ref|YP_004597366.1|	-	0.1	12.9	5.0	0.25	11.6	2.2	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4226)
hnRNP_Q_AcD	PF18360.1	gi|336254259|ref|YP_004597366.1|	-	0.21	11.6	1.3	1.2	9.2	0.2	2.6	2	1	1	3	3	3	0	Heterogeneous	nuclear	ribonucleoprotein	Q	acidic	domain
FUSC	PF04632.12	gi|336254259|ref|YP_004597366.1|	-	0.33	9.4	1.5	0.34	9.4	1.5	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF1690	PF07956.11	gi|336254259|ref|YP_004597366.1|	-	0.41	11.1	4.7	1.3	9.4	1.6	2.2	2	0	0	2	2	2	0	Protein	of	Unknown	function	(DUF1690)
Cdh1_DBD_1	PF18196.1	gi|336254259|ref|YP_004597366.1|	-	1.9	8.8	6.1	4	7.8	0.8	2.1	1	1	1	2	2	2	0	Chromodomain	helicase	DNA-binding	domain	1
UPF0051	PF01458.17	gi|336254260|ref|YP_004597367.1|	-	2.4e-63	213.7	2.0	3e-63	213.4	2.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|336254261|ref|YP_004597368.1|	-	1e-70	237.9	0.4	1.4e-70	237.4	0.4	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
ABC_tran	PF00005.27	gi|336254262|ref|YP_004597369.1|	-	1.3e-15	58.1	0.1	5.1e-15	56.2	0.1	1.8	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|336254262|ref|YP_004597369.1|	-	4.1e-06	26.4	0.3	0.029	13.8	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|336254262|ref|YP_004597369.1|	-	0.00017	22.0	0.1	0.17	12.3	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_21	PF13304.6	gi|336254262|ref|YP_004597369.1|	-	0.0002	21.3	0.5	0.16	11.7	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_5	PF07728.14	gi|336254262|ref|YP_004597369.1|	-	0.0028	17.7	0.6	2.3	8.2	0.0	2.6	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|336254262|ref|YP_004597369.1|	-	0.0035	17.0	0.0	0.0066	16.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|336254262|ref|YP_004597369.1|	-	0.039	14.2	0.1	0.92	9.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|336254262|ref|YP_004597369.1|	-	0.065	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|336254262|ref|YP_004597369.1|	-	0.092	12.9	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|336254262|ref|YP_004597369.1|	-	0.13	12.8	0.4	0.39	11.3	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
Sortase	PF04203.13	gi|336254262|ref|YP_004597369.1|	-	0.13	12.0	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	Sortase	domain
AAA_15	PF13175.6	gi|336254262|ref|YP_004597369.1|	-	0.15	11.7	1.2	0.51	10.0	0.0	1.9	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336254262|ref|YP_004597369.1|	-	0.16	12.5	6.2	0.33	11.4	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
DNA_pol_B	PF00136.21	gi|336254263|ref|YP_004597370.1|	-	9.7e-48	163.0	0.0	1.7e-47	162.2	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|336254263|ref|YP_004597370.1|	-	1e-28	100.5	0.0	1.8e-28	99.7	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_2	PF03175.13	gi|336254263|ref|YP_004597370.1|	-	0.0079	15.1	0.0	0.088	11.6	0.0	2.1	2	0	0	2	2	2	1	DNA	polymerase	type	B,	organellar	and	viral
DUF4131	PF13567.6	gi|336254265|ref|YP_004597372.1|	-	0.057	13.1	0.0	0.077	12.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
AAA_23	PF13476.6	gi|336254267|ref|YP_004597374.1|	-	2.9e-22	80.2	5.4	2.9e-22	80.2	5.4	7.5	1	1	2	3	3	1	1	AAA	domain
AAA_15	PF13175.6	gi|336254267|ref|YP_004597374.1|	-	2e-17	64.0	0.0	3.6e-11	43.4	0.0	3.5	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_13	PF13166.6	gi|336254267|ref|YP_004597374.1|	-	2.3e-12	46.4	63.0	4.7e-08	32.2	4.3	5.1	2	1	3	5	5	5	4	AAA	domain
SMC_N	PF02463.19	gi|336254267|ref|YP_004597374.1|	-	2.4e-10	40.3	52.7	4.7e-09	36.0	52.7	2.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Spc7	PF08317.11	gi|336254267|ref|YP_004597374.1|	-	1.5e-08	33.9	111.1	0.0029	16.6	0.8	6.0	2	2	4	6	6	6	6	Spc7	kinetochore	protein
Atg14	PF10186.9	gi|336254267|ref|YP_004597374.1|	-	1.5e-06	27.5	73.3	0.00023	20.4	10.6	5.2	2	2	3	5	5	5	3	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_21	PF13304.6	gi|336254267|ref|YP_004597374.1|	-	1.7e-06	28.1	3.9	0.0019	18.0	5.6	4.2	2	1	2	4	4	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|336254267|ref|YP_004597374.1|	-	1.3e-05	24.9	0.0	2.5e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Laminin_II	PF06009.12	gi|336254267|ref|YP_004597374.1|	-	0.00017	21.7	58.6	0.0051	16.8	5.0	6.6	2	2	2	6	6	6	3	Laminin	Domain	II
ABC_ATPase	PF09818.9	gi|336254267|ref|YP_004597374.1|	-	0.0002	20.3	0.6	0.056	12.2	0.1	2.6	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_27	PF13514.6	gi|336254267|ref|YP_004597374.1|	-	0.00024	20.8	0.0	0.00024	20.8	0.0	6.2	4	2	4	8	8	8	1	AAA	domain
APG6_N	PF17675.1	gi|336254267|ref|YP_004597374.1|	-	0.00067	20.2	24.4	0.00067	20.2	24.4	8.7	1	1	6	7	7	5	1	Apg6	coiled-coil	region
CENP-F_leu_zip	PF10473.9	gi|336254267|ref|YP_004597374.1|	-	0.0064	16.5	6.4	0.0064	16.5	6.4	6.8	2	2	4	6	6	6	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
zf-C4H2	PF10146.9	gi|336254267|ref|YP_004597374.1|	-	0.0064	16.8	1.4	0.0064	16.8	1.4	6.6	3	2	4	7	7	6	1	Zinc	finger-containing	protein
Laminin_I	PF06008.14	gi|336254267|ref|YP_004597374.1|	-	0.007	16.1	12.0	0.007	16.1	12.0	7.1	2	2	3	6	6	6	4	Laminin	Domain	I
DUF1664	PF07889.12	gi|336254267|ref|YP_004597374.1|	-	0.014	15.4	50.9	0.027	14.5	2.3	7.0	2	2	5	7	7	7	0	Protein	of	unknown	function	(DUF1664)
DUF3584	PF12128.8	gi|336254267|ref|YP_004597374.1|	-	0.018	12.6	112.0	0.041	11.4	24.3	4.5	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF3584)
Exonuc_VII_L	PF02601.15	gi|336254267|ref|YP_004597374.1|	-	0.02	14.5	52.6	0.031	13.9	6.1	4.4	1	1	2	3	3	2	0	Exonuclease	VII,	large	subunit
Viral_helicase1	PF01443.18	gi|336254267|ref|YP_004597374.1|	-	0.025	14.3	0.3	0.16	11.6	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
TPR_MLP1_2	PF07926.12	gi|336254267|ref|YP_004597374.1|	-	0.04	14.0	113.7	0.062	13.4	11.6	7.5	1	1	6	8	8	8	0	TPR/MLP1/MLP2-like	protein
FliJ	PF02050.16	gi|336254267|ref|YP_004597374.1|	-	0.048	13.9	0.5	0.048	13.9	0.5	7.8	2	2	7	9	9	8	0	Flagellar	FliJ	protein
AAA_33	PF13671.6	gi|336254267|ref|YP_004597374.1|	-	0.11	12.7	0.0	0.11	12.7	0.0	4.3	5	1	0	5	5	3	0	AAA	domain
FIVAR	PF07554.13	gi|336254267|ref|YP_004597374.1|	-	0.12	13.2	5.7	11	6.8	0.1	3.9	4	0	0	4	4	3	0	FIVAR	domain
MukB	PF04310.12	gi|336254267|ref|YP_004597374.1|	-	0.14	12.0	0.0	0.14	12.0	0.0	3.1	4	1	1	5	5	4	0	MukB	N-terminal
NACHT	PF05729.12	gi|336254267|ref|YP_004597374.1|	-	0.14	12.1	0.0	0.14	12.1	0.0	2.2	2	0	0	2	2	2	0	NACHT	domain
CEP63	PF17045.5	gi|336254267|ref|YP_004597374.1|	-	0.68	9.8	97.3	0.011	15.7	19.7	4.5	2	2	3	5	5	5	0	Centrosomal	protein	of	63	kDa
RepA_C	PF04796.12	gi|336254267|ref|YP_004597374.1|	-	1.4	8.9	6.4	0.17	11.9	0.4	2.4	2	1	0	2	2	2	0	Plasmid	encoded	RepA	protein
DUF4407	PF14362.6	gi|336254267|ref|YP_004597374.1|	-	2.7	7.3	94.5	1.1	8.6	16.1	4.7	1	1	4	5	5	4	0	Domain	of	unknown	function	(DUF4407)
YhzD	PF14120.6	gi|336254267|ref|YP_004597374.1|	-	3.6	7.8	0.0	3.6	7.8	0.0	5.1	6	0	0	6	6	3	0	YhzD-like	protein
GAS	PF13851.6	gi|336254267|ref|YP_004597374.1|	-	8	5.8	95.6	0.64	9.3	4.9	6.1	2	2	4	6	6	6	0	Growth-arrest	specific	micro-tubule	binding
FapA	PF03961.13	gi|336254267|ref|YP_004597374.1|	-	9.3	4.7	66.0	0.13	10.8	0.8	5.9	1	1	3	5	5	5	0	Flagellar	Assembly	Protein	A
Metallophos	PF00149.28	gi|336254268|ref|YP_004597375.1|	-	9.4e-12	45.9	0.2	1.5e-11	45.2	0.2	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|336254268|ref|YP_004597375.1|	-	2.4e-11	44.1	0.1	4.7e-11	43.2	0.1	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Response_reg	PF00072.24	gi|336254268|ref|YP_004597375.1|	-	0.012	15.8	0.0	0.026	14.7	0.0	1.5	1	0	0	1	1	1	0	Response	regulator	receiver	domain
HTH_24	PF13412.6	gi|336254269|ref|YP_004597376.1|	-	2e-06	27.3	0.0	2.8e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336254269|ref|YP_004597376.1|	-	0.00058	19.7	0.0	0.00076	19.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|336254269|ref|YP_004597376.1|	-	0.0011	18.6	0.0	0.0016	18.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.17	gi|336254269|ref|YP_004597376.1|	-	0.002	18.0	0.1	0.0027	17.5	0.1	1.3	1	1	0	1	1	1	1	TFIIE	alpha	subunit
Sigma70_r4_2	PF08281.12	gi|336254269|ref|YP_004597376.1|	-	0.004	16.8	0.0	0.0066	16.1	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_28	PF13518.6	gi|336254269|ref|YP_004597376.1|	-	0.012	15.7	0.0	0.021	15.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336254269|ref|YP_004597376.1|	-	0.016	15.2	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|336254269|ref|YP_004597376.1|	-	0.079	12.9	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
RepL	PF05732.11	gi|336254269|ref|YP_004597376.1|	-	0.099	12.1	0.0	0.13	11.7	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_23	PF13384.6	gi|336254269|ref|YP_004597376.1|	-	0.099	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Rrf2	PF02082.20	gi|336254269|ref|YP_004597376.1|	-	0.11	12.8	0.0	0.15	12.5	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_12	PF08461.10	gi|336254269|ref|YP_004597376.1|	-	0.12	12.4	0.1	0.36	10.8	0.1	2.0	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Sigma70_r4	PF04545.16	gi|336254269|ref|YP_004597376.1|	-	0.14	11.7	0.1	0.39	10.3	0.1	1.8	1	1	1	2	2	2	0	Sigma-70,	region	4
AAA	PF00004.29	gi|336254270|ref|YP_004597377.1|	-	5.7e-45	153.0	1.8	7.6e-45	152.6	0.1	2.1	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|336254270|ref|YP_004597377.1|	-	1e-14	54.0	2.2	3.2e-14	52.4	2.2	1.9	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|336254270|ref|YP_004597377.1|	-	4.8e-09	36.6	0.0	1.7e-08	34.7	0.0	2.0	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|336254270|ref|YP_004597377.1|	-	6.4e-07	29.3	0.0	1.6e-06	27.9	0.0	1.6	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|336254270|ref|YP_004597377.1|	-	4e-06	27.1	0.3	0.00085	19.6	0.0	2.8	1	1	1	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|336254270|ref|YP_004597377.1|	-	5.6e-06	26.4	1.9	1.9e-05	24.6	0.3	2.6	2	1	0	2	2	1	1	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.6	gi|336254270|ref|YP_004597377.1|	-	1.6e-05	25.4	3.6	0.017	15.6	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|336254270|ref|YP_004597377.1|	-	4e-05	24.1	6.6	0.00035	21.0	0.0	3.4	3	2	1	4	4	3	1	AAA	ATPase	domain
GrpE	PF01025.19	gi|336254270|ref|YP_004597377.1|	-	9.1e-05	22.2	8.3	9.1e-05	22.2	8.3	2.2	3	0	0	3	3	1	1	GrpE
AAA_18	PF13238.6	gi|336254270|ref|YP_004597377.1|	-	0.00026	21.5	0.5	0.0092	16.5	0.0	3.0	2	1	0	3	3	2	1	AAA	domain
Prot_ATP_ID_OB	PF16450.5	gi|336254270|ref|YP_004597377.1|	-	0.00032	20.6	0.8	0.0007	19.5	0.2	2.0	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	C-terminal	domain
DUF815	PF05673.13	gi|336254270|ref|YP_004597377.1|	-	0.00051	19.3	0.0	0.0011	18.2	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TIP49	PF06068.13	gi|336254270|ref|YP_004597377.1|	-	0.00084	18.6	1.0	0.0026	17.0	0.0	2.2	2	0	0	2	2	2	1	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|336254270|ref|YP_004597377.1|	-	0.0014	18.0	0.2	0.0046	16.4	0.1	1.8	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_14	PF13173.6	gi|336254270|ref|YP_004597377.1|	-	0.0015	18.5	0.4	0.0098	15.9	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|336254270|ref|YP_004597377.1|	-	0.0016	18.2	0.1	0.045	13.5	0.0	2.6	2	1	0	2	2	2	1	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|336254270|ref|YP_004597377.1|	-	0.0034	17.8	0.0	0.0096	16.3	0.0	1.9	1	0	0	1	1	1	1	RNA	helicase
IstB_IS21	PF01695.17	gi|336254270|ref|YP_004597377.1|	-	0.0035	17.1	0.0	0.0097	15.6	0.0	1.8	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|336254270|ref|YP_004597377.1|	-	0.0067	16.6	1.2	0.023	14.9	0.0	2.4	2	2	0	3	3	1	1	AAA	domain
AAA_24	PF13479.6	gi|336254270|ref|YP_004597377.1|	-	0.0078	16.0	0.1	0.0078	16.0	0.1	2.9	3	2	0	3	3	3	1	AAA	domain
NACHT	PF05729.12	gi|336254270|ref|YP_004597377.1|	-	0.011	15.7	0.1	0.12	12.3	0.0	2.4	1	1	0	2	2	2	0	NACHT	domain
TsaE	PF02367.17	gi|336254270|ref|YP_004597377.1|	-	0.011	15.7	0.0	0.024	14.7	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_3	PF07726.11	gi|336254270|ref|YP_004597377.1|	-	0.013	15.4	0.2	0.059	13.2	0.0	2.3	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Atg14	PF10186.9	gi|336254270|ref|YP_004597377.1|	-	0.014	14.5	1.4	0.021	13.9	1.4	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_7	PF12775.7	gi|336254270|ref|YP_004597377.1|	-	0.017	14.6	1.0	0.03	13.8	0.0	2.0	2	1	0	2	2	1	0	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|336254270|ref|YP_004597377.1|	-	0.018	15.3	0.0	0.018	15.3	0.0	2.7	3	0	0	3	3	2	0	AAA	domain
Fmp27_WPPW	PF10359.9	gi|336254270|ref|YP_004597377.1|	-	0.019	13.8	6.2	0.042	12.7	6.2	1.6	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
TniB	PF05621.11	gi|336254270|ref|YP_004597377.1|	-	0.024	14.0	0.0	1.7	8.0	0.0	2.6	1	1	0	2	2	2	0	Bacterial	TniB	protein
Parvo_NS1	PF01057.17	gi|336254270|ref|YP_004597377.1|	-	0.027	13.6	0.0	0.059	12.4	0.0	1.5	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
NB-ARC	PF00931.22	gi|336254270|ref|YP_004597377.1|	-	0.034	13.3	0.0	0.12	11.5	0.0	2.1	1	1	0	1	1	1	0	NB-ARC	domain
Fungal_TACC	PF12709.7	gi|336254270|ref|YP_004597377.1|	-	0.039	14.4	4.7	0.13	12.8	4.7	1.9	1	0	0	1	1	1	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
SHE3	PF17078.5	gi|336254270|ref|YP_004597377.1|	-	0.041	13.6	9.0	0.079	12.7	9.0	1.4	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
CPT	PF07931.12	gi|336254270|ref|YP_004597377.1|	-	0.045	13.6	0.0	0.11	12.3	0.0	1.8	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
DUF2334	PF10096.9	gi|336254270|ref|YP_004597377.1|	-	0.059	13.0	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
bZIP_1	PF00170.21	gi|336254270|ref|YP_004597377.1|	-	0.085	13.0	13.7	0.19	11.8	2.9	2.8	1	1	1	2	2	2	0	bZIP	transcription	factor
ADIP	PF11559.8	gi|336254270|ref|YP_004597377.1|	-	0.09	12.9	8.6	0.28	11.3	8.6	1.7	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
AAA_25	PF13481.6	gi|336254270|ref|YP_004597377.1|	-	0.09	12.3	9.7	0.22	11.1	0.1	3.6	3	1	1	4	4	3	0	AAA	domain
ATPase	PF06745.13	gi|336254270|ref|YP_004597377.1|	-	0.1	11.9	9.7	0.34	10.2	0.0	3.7	3	1	0	4	4	3	0	KaiC
Sigma54_activ_2	PF14532.6	gi|336254270|ref|YP_004597377.1|	-	0.12	12.5	0.1	0.73	9.9	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Occludin_ELL	PF07303.13	gi|336254270|ref|YP_004597377.1|	-	0.16	12.7	2.9	2.9	8.6	3.1	2.6	2	0	0	2	2	2	0	Occludin	homology	domain
CLZ	PF16526.5	gi|336254270|ref|YP_004597377.1|	-	0.21	11.9	6.6	1.2	9.5	6.6	2.4	1	0	0	1	1	1	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
NTPase_1	PF03266.15	gi|336254270|ref|YP_004597377.1|	-	0.24	11.3	4.6	1.9	8.4	0.0	3.5	3	1	1	4	4	4	0	NTPase
ATPase_2	PF01637.18	gi|336254270|ref|YP_004597377.1|	-	0.25	11.2	5.1	0.73	9.7	0.0	3.3	3	1	2	5	5	5	0	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|336254270|ref|YP_004597377.1|	-	0.29	11.7	4.9	0.35	11.4	0.0	2.7	2	1	0	2	2	1	0	ABC	transporter
GAS	PF13851.6	gi|336254270|ref|YP_004597377.1|	-	0.39	10.1	14.5	0.96	8.8	14.5	1.8	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4241	PF14025.6	gi|336254270|ref|YP_004597377.1|	-	0.49	10.7	2.6	2.1	8.6	0.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4241)
Cep57_CLD_2	PF14197.6	gi|336254270|ref|YP_004597377.1|	-	0.57	10.3	11.9	1.6	8.9	11.9	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
VSG_B	PF13206.6	gi|336254270|ref|YP_004597377.1|	-	0.73	9.0	5.6	0.19	10.9	0.3	2.2	2	0	0	2	2	2	0	Trypanosomal	VSG	domain
AAA_11	PF13086.6	gi|336254270|ref|YP_004597377.1|	-	1.1	8.9	9.5	0.43	10.3	0.1	2.5	1	1	1	2	2	2	0	AAA	domain
Swi5	PF07061.11	gi|336254270|ref|YP_004597377.1|	-	1.9	8.7	7.1	6.6	6.9	6.1	2.6	1	1	0	1	1	1	0	Swi5
APG6_N	PF17675.1	gi|336254270|ref|YP_004597377.1|	-	1.9	9.0	15.8	0.72	10.4	12.2	2.1	2	0	0	2	2	1	0	Apg6	coiled-coil	region
SlyX	PF04102.12	gi|336254270|ref|YP_004597377.1|	-	2.1	9.0	9.8	8.7	7.1	8.2	2.8	2	1	0	2	2	1	0	SlyX
DUF4407	PF14362.6	gi|336254270|ref|YP_004597377.1|	-	2.3	7.5	8.0	0.78	9.0	4.8	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Mgr1	PF08602.10	gi|336254270|ref|YP_004597377.1|	-	2.4	6.9	5.7	1.2	7.8	3.6	1.6	2	0	0	2	2	2	0	Mgr1-like,	i-AAA	protease	complex	subunit
YabA	PF06156.13	gi|336254270|ref|YP_004597377.1|	-	3.2	8.4	10.0	61	4.3	8.8	2.9	3	1	0	3	3	2	0	Initiation	control	protein	YabA
FlaC_arch	PF05377.11	gi|336254270|ref|YP_004597377.1|	-	3.5	8.1	8.7	42	4.7	0.1	3.4	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF3987	PF13148.6	gi|336254270|ref|YP_004597377.1|	-	7.7	5.4	10.1	2.2	7.2	5.5	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3987)
MAP17	PF15807.5	gi|336254271|ref|YP_004597378.1|	-	0.43	10.8	1.6	0.46	10.7	1.6	1.2	1	0	0	1	1	1	0	Membrane-associated	protein	117	kDa,	PDZK1-interacting	protein	1
DUF3742	PF12553.8	gi|336254271|ref|YP_004597378.1|	-	0.47	10.6	2.4	0.46	10.6	2.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
GATase	PF00117.28	gi|336254272|ref|YP_004597379.1|	-	1.9e-35	122.4	0.0	2.3e-35	122.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|336254272|ref|YP_004597379.1|	-	9.1e-14	51.7	2.8	2.4e-06	27.5	0.0	2.9	2	1	0	3	3	3	2	Peptidase	C26
GATase_3	PF07685.14	gi|336254272|ref|YP_004597379.1|	-	0.037	13.6	0.4	0.084	12.5	0.4	1.8	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF3194	PF11419.8	gi|336254273|ref|YP_004597380.1|	-	3.7e-05	24.0	0.4	5.6e-05	23.4	0.4	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
Prefoldin_2	PF01920.20	gi|336254274|ref|YP_004597381.1|	-	9.3e-27	93.1	18.4	1e-26	92.9	18.4	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
FlaC_arch	PF05377.11	gi|336254274|ref|YP_004597381.1|	-	0.00025	21.3	4.4	0.00025	21.3	4.4	2.6	2	1	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
DUF5082	PF16888.5	gi|336254274|ref|YP_004597381.1|	-	0.00033	20.9	11.2	0.00043	20.5	11.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5082)
ALIX_LYPXL_bnd	PF13949.6	gi|336254274|ref|YP_004597381.1|	-	0.00053	19.4	6.5	0.00063	19.1	6.5	1.0	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
Prefoldin	PF02996.17	gi|336254274|ref|YP_004597381.1|	-	0.00068	19.5	16.6	0.032	14.1	16.6	2.6	1	1	0	1	1	1	1	Prefoldin	subunit
CLZ	PF16526.5	gi|336254274|ref|YP_004597381.1|	-	0.00079	19.7	3.8	0.00079	19.7	3.8	2.5	2	1	1	3	3	3	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Laminin_II	PF06009.12	gi|336254274|ref|YP_004597381.1|	-	0.0038	17.2	9.4	0.0051	16.8	9.4	1.2	1	0	0	1	1	1	1	Laminin	Domain	II
DHR10	PF18595.1	gi|336254274|ref|YP_004597381.1|	-	0.0074	16.3	6.4	0.0074	16.3	6.4	2.1	1	1	1	2	2	2	1	Designed	helical	repeat	protein	10	domain
XhlA	PF10779.9	gi|336254274|ref|YP_004597381.1|	-	0.01	16.0	1.6	0.01	16.0	1.6	2.3	2	0	0	2	2	2	0	Haemolysin	XhlA
CENP-F_leu_zip	PF10473.9	gi|336254274|ref|YP_004597381.1|	-	0.018	15.1	7.4	0.018	15.1	7.4	2.2	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3584	PF12128.8	gi|336254274|ref|YP_004597381.1|	-	0.018	12.6	8.3	0.023	12.2	8.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF2379	PF09543.10	gi|336254274|ref|YP_004597381.1|	-	0.022	15.0	2.1	0.022	15.0	2.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2379)
DUF5344	PF17279.2	gi|336254274|ref|YP_004597381.1|	-	0.027	15.1	10.4	0.2	12.2	1.9	2.7	1	1	2	3	3	3	0	Family	of	unknown	function	(DUF5344)
PAF-AH_p_II	PF03403.13	gi|336254274|ref|YP_004597381.1|	-	0.027	13.0	0.7	0.034	12.6	0.7	1.1	1	0	0	1	1	1	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
DUF4988	PF16378.5	gi|336254274|ref|YP_004597381.1|	-	0.028	14.1	0.8	0.028	14.1	0.8	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function
ERM	PF00769.19	gi|336254274|ref|YP_004597381.1|	-	0.046	13.5	15.6	0.068	13.0	15.6	1.2	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Cep57_CLD	PF14073.6	gi|336254274|ref|YP_004597381.1|	-	0.054	13.5	15.4	0.28	11.2	4.8	2.1	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	Cep57
WXG100	PF06013.12	gi|336254274|ref|YP_004597381.1|	-	0.079	13.2	7.2	3.1	8.1	0.1	2.8	2	1	1	3	3	3	0	Proteins	of	100	residues	with	WXG
BRI3BP	PF14965.6	gi|336254274|ref|YP_004597381.1|	-	0.11	12.0	0.1	0.22	11.0	0.1	1.5	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
HMMR_N	PF15905.5	gi|336254274|ref|YP_004597381.1|	-	0.15	11.5	14.3	0.19	11.1	14.3	1.1	1	0	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
BRE1	PF08647.11	gi|336254274|ref|YP_004597381.1|	-	0.19	11.8	15.0	0.86	9.7	4.7	2.1	1	1	1	2	2	2	0	BRE1	E3	ubiquitin	ligase
SASP	PF00269.20	gi|336254274|ref|YP_004597381.1|	-	0.25	11.4	3.4	0.57	10.3	3.4	1.9	1	1	0	1	1	1	0	Small,	acid-soluble	spore	proteins,	alpha/beta	type
Fijivirus_P9-2	PF06837.11	gi|336254274|ref|YP_004597381.1|	-	0.26	10.7	0.4	0.33	10.4	0.4	1.1	1	0	0	1	1	1	0	Fijivirus	P9-2	protein
HemX	PF04375.14	gi|336254274|ref|YP_004597381.1|	-	0.32	10.2	16.4	0.23	10.7	1.7	2.0	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Sec34	PF04136.15	gi|336254274|ref|YP_004597381.1|	-	0.33	10.8	11.9	0.095	12.6	1.8	2.1	1	1	1	2	2	2	0	Sec34-like	family
TPR_MLP1_2	PF07926.12	gi|336254274|ref|YP_004597381.1|	-	0.36	10.9	20.7	1.3	9.1	7.0	2.1	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
TraF_2	PF13729.6	gi|336254274|ref|YP_004597381.1|	-	0.36	10.1	10.8	0.045	13.1	1.2	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
FapA	PF03961.13	gi|336254274|ref|YP_004597381.1|	-	0.61	8.6	6.0	0.88	8.1	6.0	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
FUSC	PF04632.12	gi|336254274|ref|YP_004597381.1|	-	0.63	8.5	2.1	0.78	8.2	2.1	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF724	PF05266.14	gi|336254274|ref|YP_004597381.1|	-	0.63	9.8	10.6	0.83	9.5	10.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Exonuc_VII_L	PF02601.15	gi|336254274|ref|YP_004597381.1|	-	0.64	9.5	4.4	0.8	9.2	4.4	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
EzrA	PF06160.12	gi|336254274|ref|YP_004597381.1|	-	0.83	7.7	16.3	1.1	7.3	16.3	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
DUF3450	PF11932.8	gi|336254274|ref|YP_004597381.1|	-	1	8.6	20.6	0.23	10.7	5.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
NPV_P10	PF05531.12	gi|336254274|ref|YP_004597381.1|	-	1.4	9.5	9.9	0.81	10.2	1.1	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Prominin	PF05478.11	gi|336254274|ref|YP_004597381.1|	-	1.7	6.5	5.9	2.1	6.2	5.9	1.1	1	0	0	1	1	1	0	Prominin
Spc24	PF08286.11	gi|336254274|ref|YP_004597381.1|	-	1.8	8.8	18.7	1	9.6	4.3	2.2	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
DUF1664	PF07889.12	gi|336254274|ref|YP_004597381.1|	-	2.2	8.4	9.8	1.3	9.1	1.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|336254274|ref|YP_004597381.1|	-	2.6	6.8	19.3	1.9	7.3	6.6	2.0	1	1	0	2	2	2	0	Spc7	kinetochore	protein
DUF4164	PF13747.6	gi|336254274|ref|YP_004597381.1|	-	2.6	8.4	16.1	0.3	11.4	2.8	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Syntaxin-6_N	PF09177.11	gi|336254274|ref|YP_004597381.1|	-	2.6	8.6	14.0	5.7	7.5	2.8	2.4	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF4140	PF13600.6	gi|336254274|ref|YP_004597381.1|	-	2.8	8.4	18.3	9.4e+02	0.3	18.3	2.2	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
Snapin_Pallidin	PF14712.6	gi|336254274|ref|YP_004597381.1|	-	3.2	8.2	13.3	2.4	8.6	2.9	2.2	2	0	0	2	2	2	0	Snapin/Pallidin
Seryl_tRNA_N	PF02403.22	gi|336254274|ref|YP_004597381.1|	-	3.7	7.8	15.0	1.1	9.5	1.6	2.2	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Med21	PF11221.8	gi|336254274|ref|YP_004597381.1|	-	4	7.7	17.0	1.7	8.9	5.1	2.1	2	0	0	2	2	2	0	Subunit	21	of	Mediator	complex
Fzo_mitofusin	PF04799.13	gi|336254274|ref|YP_004597381.1|	-	4	7.0	11.7	6.8	6.2	2.7	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
DUF572	PF04502.13	gi|336254274|ref|YP_004597381.1|	-	4.5	6.8	10.6	7.2	6.1	10.6	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
V-SNARE	PF05008.15	gi|336254274|ref|YP_004597381.1|	-	4.6	7.7	13.6	5	7.6	3.1	2.3	2	0	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
DUF2508	PF10704.9	gi|336254275|ref|YP_004597382.1|	-	0.082	13.1	1.2	0.14	12.4	1.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2508)
PAP2_3	PF14378.6	gi|336254276|ref|YP_004597383.1|	-	2.1e-18	66.7	15.6	2.1e-18	66.7	15.6	1.8	2	0	0	2	2	2	1	PAP2	superfamily
PAP2	PF01569.21	gi|336254276|ref|YP_004597383.1|	-	2.5e-12	46.7	5.8	2.5e-12	46.7	5.8	2.7	2	1	1	3	3	3	1	PAP2	superfamily
NADH_dh_m_C1	PF15088.6	gi|336254276|ref|YP_004597383.1|	-	0.086	12.5	0.1	0.18	11.5	0.1	1.5	1	0	0	1	1	1	0	NADH	dehydrogenase	[ubiquinone]	1	subunit	C1,	mitochondrial
DUF423	PF04241.15	gi|336254276|ref|YP_004597383.1|	-	1	9.6	8.4	1	9.6	0.1	3.0	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF423)
YfhO	PF09586.10	gi|336254276|ref|YP_004597383.1|	-	1.1	7.4	12.3	0.26	9.5	6.5	1.9	1	1	1	2	2	2	0	Bacterial	membrane	protein	YfhO
Pox_A14	PF05767.12	gi|336254276|ref|YP_004597383.1|	-	5	7.3	11.8	0.35	11.0	1.1	3.1	2	2	1	3	3	3	0	Poxvirus	virion	envelope	protein	A14
SBP_bac_5	PF00496.22	gi|336254277|ref|YP_004597384.1|	-	5.4e-46	157.3	0.0	4e-41	141.2	0.0	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Rpr2	PF04032.16	gi|336254278|ref|YP_004597385.1|	-	6.3e-13	48.8	0.0	7.7e-13	48.6	0.0	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF1771	PF08590.10	gi|336254278|ref|YP_004597385.1|	-	0.038	14.4	0.6	0.056	13.8	0.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1771)
zf-RING_7	PF02591.15	gi|336254278|ref|YP_004597385.1|	-	0.057	13.6	2.4	0.9	9.8	0.4	2.5	1	1	1	2	2	2	0	C4-type	zinc	ribbon	domain
CRS1_YhbY	PF01985.21	gi|336254279|ref|YP_004597386.1|	-	1.2e-14	54.2	0.0	1.4e-14	54.0	0.0	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
MS_channel	PF00924.18	gi|336254280|ref|YP_004597387.1|	-	1.7e-47	161.7	0.1	1.7e-47	161.7	0.1	1.5	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
HAS-barrel	PF09378.10	gi|336254280|ref|YP_004597387.1|	-	0.068	13.3	0.5	0.35	11.1	0.1	2.3	3	0	0	3	3	3	0	HAS	barrel	domain
DUF2092	PF09865.9	gi|336254281|ref|YP_004597388.1|	-	1.3e-07	31.2	0.0	5.6e-07	29.1	0.0	2.0	1	1	0	1	1	1	1	Predicted	periplasmic	protein	(DUF2092)
LolA_like	PF17131.4	gi|336254281|ref|YP_004597388.1|	-	2.9e-06	27.2	1.1	3.6e-05	23.6	1.1	2.5	1	1	0	1	1	1	1	Outer	membrane	lipoprotein-sorting	protein
MucB_RseB	PF03888.14	gi|336254281|ref|YP_004597388.1|	-	0.0001	21.9	0.1	0.00084	18.9	0.0	2.1	2	0	0	2	2	2	1	MucB/RseB	N-terminal	domain
EamA	PF00892.20	gi|336254282|ref|YP_004597389.1|	-	1.6e-41	141.7	35.2	6.1e-23	81.5	11.0	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|336254282|ref|YP_004597389.1|	-	0.12	11.7	5.3	0.22	10.9	5.3	1.6	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
DUF2270	PF10028.9	gi|336254283|ref|YP_004597390.1|	-	1.6e-69	233.2	2.2	1.9e-69	232.9	2.2	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
PRT_C	PF08372.10	gi|336254283|ref|YP_004597390.1|	-	0.03	14.1	0.4	0.058	13.1	0.1	1.7	2	0	0	2	2	2	0	Plant	phosphoribosyltransferase	C-terminal
Acyl_transf_3	PF01757.22	gi|336254283|ref|YP_004597390.1|	-	0.033	13.3	1.9	0.048	12.7	0.1	1.9	2	0	0	2	2	2	0	Acyltransferase	family
Peripla_BP_2	PF01497.18	gi|336254284|ref|YP_004597391.1|	-	1.9e-15	57.1	0.0	2.6e-15	56.7	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|336254284|ref|YP_004597391.1|	-	0.93	9.4	4.5	1.5	8.8	4.5	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SNF	PF00209.18	gi|336254285|ref|YP_004597392.1|	-	1.4e-50	172.5	21.7	2.1e-25	89.4	7.9	2.1	1	1	1	2	2	2	2	Sodium:neurotransmitter	symporter	family
HTH_IclR	PF09339.10	gi|336254286|ref|YP_004597393.1|	-	0.00046	19.9	0.0	0.0046	16.7	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254286|ref|YP_004597393.1|	-	0.00064	19.6	0.0	0.0015	18.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336254286|ref|YP_004597393.1|	-	0.022	14.6	0.0	0.04	13.8	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Pro-kuma_activ	PF09286.11	gi|336254286|ref|YP_004597393.1|	-	0.053	13.8	0.0	0.081	13.2	0.0	1.2	1	0	0	1	1	1	0	Pro-kumamolisin,	activation	domain
HTH_45	PF14947.6	gi|336254286|ref|YP_004597393.1|	-	0.08	12.9	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|336254286|ref|YP_004597393.1|	-	0.084	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|336254286|ref|YP_004597393.1|	-	0.099	12.7	0.1	0.23	11.5	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HemN_C	PF06969.16	gi|336254286|ref|YP_004597393.1|	-	0.12	12.5	0.2	0.52	10.4	0.1	2.0	2	0	0	2	2	2	0	HemN	C-terminal	domain
Methyltransf_31	PF13847.6	gi|336254287|ref|YP_004597394.1|	-	4.6e-16	59.0	0.0	6.1e-16	58.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336254287|ref|YP_004597394.1|	-	3.6e-12	46.8	0.3	5.7e-12	46.2	0.3	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336254287|ref|YP_004597394.1|	-	1.8e-11	44.7	0.0	3.3e-11	43.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254287|ref|YP_004597394.1|	-	2.7e-10	40.3	0.0	4.1e-10	39.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254287|ref|YP_004597394.1|	-	1.3e-09	38.6	0.1	2e-09	38.0	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|336254287|ref|YP_004597394.1|	-	5.5e-07	29.3	0.0	8.8e-07	28.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|336254287|ref|YP_004597394.1|	-	1.1e-06	28.7	0.0	5e-06	26.5	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|336254287|ref|YP_004597394.1|	-	1.3e-05	24.7	0.0	2e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_2	PF00891.18	gi|336254287|ref|YP_004597394.1|	-	5.9e-05	22.4	0.1	8.8e-05	21.9	0.1	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
CMAS	PF02353.20	gi|336254287|ref|YP_004597394.1|	-	8e-05	22.1	0.0	0.00011	21.6	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
GCD14	PF08704.10	gi|336254287|ref|YP_004597394.1|	-	8.5e-05	22.3	0.1	0.00012	21.8	0.1	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
PrmA	PF06325.13	gi|336254287|ref|YP_004597394.1|	-	0.00038	19.9	0.1	0.00056	19.4	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.6	gi|336254287|ref|YP_004597394.1|	-	0.00077	20.5	0.9	0.0021	19.0	0.7	1.8	2	0	0	2	2	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336254287|ref|YP_004597394.1|	-	0.0012	18.7	0.0	0.0019	18.0	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.18	gi|336254287|ref|YP_004597394.1|	-	0.0018	17.6	0.0	0.003	16.9	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_32	PF13679.6	gi|336254287|ref|YP_004597394.1|	-	0.003	17.6	0.0	0.0042	17.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|336254287|ref|YP_004597394.1|	-	0.005	16.0	0.0	0.0078	15.4	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
UPF0020	PF01170.18	gi|336254287|ref|YP_004597394.1|	-	0.0079	15.9	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MarR_2	PF12802.7	gi|336254287|ref|YP_004597394.1|	-	0.019	14.9	0.0	0.13	12.2	0.0	2.1	2	0	0	2	2	2	0	MarR	family
HTH_20	PF12840.7	gi|336254287|ref|YP_004597394.1|	-	0.099	12.7	0.1	0.38	10.8	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HAP1_N	PF04849.13	gi|336254288|ref|YP_004597395.1|	-	0.00069	18.9	2.4	0.00083	18.7	2.4	1.1	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
DUF1465	PF07323.12	gi|336254288|ref|YP_004597395.1|	-	0.0013	18.6	1.5	0.0021	17.9	0.3	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1465)
AAA_13	PF13166.6	gi|336254288|ref|YP_004597395.1|	-	0.0054	15.4	2.9	0.0057	15.4	2.9	1.1	1	0	0	1	1	1	1	AAA	domain
BLOC1_2	PF10046.9	gi|336254288|ref|YP_004597395.1|	-	0.0084	16.4	0.9	0.011	16.0	0.9	1.2	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Arfaptin	PF06456.13	gi|336254288|ref|YP_004597395.1|	-	0.011	15.3	0.1	0.012	15.1	0.1	1.1	1	0	0	1	1	1	0	Arfaptin-like	domain
DUF1664	PF07889.12	gi|336254288|ref|YP_004597395.1|	-	0.021	14.9	0.8	0.03	14.4	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
GIT_CC	PF16559.5	gi|336254288|ref|YP_004597395.1|	-	0.038	13.9	0.1	0.062	13.2	0.1	1.3	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
DUF4988	PF16378.5	gi|336254288|ref|YP_004597395.1|	-	0.048	13.3	1.0	0.075	12.7	0.8	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function
PspB	PF06667.12	gi|336254288|ref|YP_004597395.1|	-	0.064	13.3	0.3	0.16	12.0	0.3	1.7	1	0	0	1	1	1	0	Phage	shock	protein	B
DUF16	PF01519.16	gi|336254288|ref|YP_004597395.1|	-	0.076	13.5	2.1	0.1	13.1	2.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
NPV_P10	PF05531.12	gi|336254288|ref|YP_004597395.1|	-	0.084	13.3	0.7	0.11	13.0	0.7	1.4	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Herpes_UL6	PF01763.16	gi|336254288|ref|YP_004597395.1|	-	0.091	11.3	0.5	0.095	11.2	0.5	1.0	1	0	0	1	1	1	0	Herpesvirus	UL6	like
Tho2	PF11262.8	gi|336254288|ref|YP_004597395.1|	-	0.091	11.9	0.5	0.1	11.8	0.5	1.1	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
CCDC85	PF10226.9	gi|336254288|ref|YP_004597395.1|	-	0.16	11.7	4.8	0.28	10.8	4.8	1.5	1	1	0	1	1	1	0	CCDC85	family
Spc24	PF08286.11	gi|336254288|ref|YP_004597395.1|	-	0.21	11.8	5.2	0.32	11.2	5.2	1.4	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
YabA	PF06156.13	gi|336254288|ref|YP_004597395.1|	-	0.28	11.8	2.0	0.33	11.6	2.0	1.4	1	1	0	1	1	1	0	Initiation	control	protein	YabA
DivIC	PF04977.15	gi|336254288|ref|YP_004597395.1|	-	0.3	10.9	6.1	0.046	13.5	2.2	1.7	2	0	0	2	2	2	0	Septum	formation	initiator
SlyX	PF04102.12	gi|336254288|ref|YP_004597395.1|	-	2.1	9.0	10.2	1.8	9.2	6.2	2.4	1	1	1	2	2	2	0	SlyX
PALP	PF00291.25	gi|336254289|ref|YP_004597396.1|	-	1.2e-61	208.7	1.6	1.4e-61	208.5	1.6	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
CoA_binding_2	PF13380.6	gi|336254291|ref|YP_004597398.1|	-	1.9e-38	131.5	0.3	2.3e-38	131.3	0.3	1.1	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|336254291|ref|YP_004597398.1|	-	7.3e-08	33.0	0.0	1.2e-07	32.4	0.0	1.3	1	0	0	1	1	1	1	CoA	binding	domain
TusA	PF01206.17	gi|336254291|ref|YP_004597398.1|	-	0.081	12.8	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	Sulfurtransferase	TusA
ATPase	PF06745.13	gi|336254292|ref|YP_004597399.1|	-	8.3e-09	35.1	0.0	1.2e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	KaiC
DUF835	PF05763.12	gi|336254292|ref|YP_004597399.1|	-	1.2e-06	28.3	0.0	1.8e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
PAXNEB	PF05625.11	gi|336254292|ref|YP_004597399.1|	-	0.0094	15.1	0.0	0.0098	15.1	0.0	1.1	1	0	0	1	1	1	1	PAXNEB	protein
DUF1477	PF07346.11	gi|336254292|ref|YP_004597399.1|	-	0.035	14.3	0.1	0.079	13.2	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1477)
IstB_IS21	PF01695.17	gi|336254292|ref|YP_004597399.1|	-	0.1	12.3	0.0	0.27	10.9	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
UbiA	PF01040.18	gi|336254293|ref|YP_004597400.1|	-	1.4e-46	158.8	18.2	1.6e-46	158.6	18.2	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
HTH_IclR	PF09339.10	gi|336254295|ref|YP_004597402.1|	-	3.5e-06	26.7	0.0	5.4e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254295|ref|YP_004597402.1|	-	1.6e-05	24.8	0.0	3e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254295|ref|YP_004597402.1|	-	0.0018	17.8	0.3	0.0039	16.7	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336254295|ref|YP_004597402.1|	-	0.0027	17.5	0.1	0.0071	16.1	0.1	1.7	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|336254295|ref|YP_004597402.1|	-	0.0036	17.2	0.5	0.0068	16.3	0.1	1.6	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|336254295|ref|YP_004597402.1|	-	0.013	15.4	0.0	0.021	14.7	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336254295|ref|YP_004597402.1|	-	0.017	15.0	0.1	0.025	14.5	0.1	1.2	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.6	gi|336254295|ref|YP_004597402.1|	-	0.023	14.8	0.1	0.052	13.7	0.1	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|336254295|ref|YP_004597402.1|	-	0.041	14.1	0.0	0.073	13.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
FUR	PF01475.19	gi|336254295|ref|YP_004597402.1|	-	0.044	13.9	0.0	0.061	13.5	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_29	PF13551.6	gi|336254295|ref|YP_004597402.1|	-	0.052	13.6	0.0	0.085	12.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_5	PF01022.20	gi|336254295|ref|YP_004597402.1|	-	0.066	13.1	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|336254295|ref|YP_004597402.1|	-	0.075	13.0	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336254295|ref|YP_004597402.1|	-	0.095	13.2	0.0	0.2	12.1	0.0	1.6	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
TetR_N	PF00440.23	gi|336254295|ref|YP_004597402.1|	-	0.1	12.4	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
UPF0122	PF04297.14	gi|336254295|ref|YP_004597402.1|	-	0.12	12.6	0.0	0.21	11.8	0.0	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HATPase_c_3	PF13589.6	gi|336254297|ref|YP_004597404.1|	-	9.9e-18	64.3	0.0	1.9e-17	63.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|336254297|ref|YP_004597404.1|	-	0.00035	21.1	0.0	0.00094	19.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PaRep2b	PF07775.11	gi|336254297|ref|YP_004597404.1|	-	0.001	17.6	0.0	0.0017	16.9	0.0	1.2	1	0	0	1	1	1	1	PaRep2b	protein
Phage_integrase	PF00589.22	gi|336254302|ref|YP_004597409.1|	-	3.5e-08	33.4	0.0	6.7e-08	32.5	0.0	1.4	1	1	0	1	1	1	1	Phage	integrase	family
Mrr_cat	PF04471.12	gi|336254303|ref|YP_004597410.1|	-	2.6e-06	27.4	0.2	1.3e-05	25.2	0.1	2.1	2	0	0	2	2	2	1	Restriction	endonuclease
HTH_9	PF08221.11	gi|336254303|ref|YP_004597410.1|	-	0.11	12.6	0.0	0.56	10.3	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
N6_N4_Mtase	PF01555.18	gi|336254304|ref|YP_004597411.1|	-	7.9e-35	120.6	0.0	1e-34	120.3	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Transglut_core2	PF13369.6	gi|336254304|ref|YP_004597411.1|	-	0.13	11.8	0.0	0.23	11.0	0.0	1.3	1	0	0	1	1	1	0	Transglutaminase-like	superfamily
PapJ	PF14855.6	gi|336254305|ref|YP_004597412.1|	-	0.029	14.0	0.1	0.41	10.3	0.0	2.0	1	1	1	2	2	2	0	Pilus-assembly	fibrillin	subunit,	chaperone
HTH_IclR	PF09339.10	gi|336254305|ref|YP_004597412.1|	-	0.08	12.8	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254307|ref|YP_004597414.1|	-	5.8e-07	29.0	0.0	3.4e-06	26.5	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336254307|ref|YP_004597414.1|	-	5.5e-06	26.0	0.1	2e-05	24.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|336254307|ref|YP_004597414.1|	-	1.1e-05	25.4	0.0	3.2e-05	23.8	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|336254307|ref|YP_004597414.1|	-	0.0013	18.8	0.0	0.003	17.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254307|ref|YP_004597414.1|	-	0.0016	18.3	0.0	0.0057	16.5	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_45	PF14947.6	gi|336254307|ref|YP_004597414.1|	-	0.0039	17.1	0.0	0.0083	16.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|336254307|ref|YP_004597414.1|	-	0.014	15.4	0.0	0.028	14.4	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.7	gi|336254307|ref|YP_004597414.1|	-	0.054	13.6	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336254307|ref|YP_004597414.1|	-	0.11	12.3	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FaeA	PF04703.12	gi|336254307|ref|YP_004597414.1|	-	0.13	12.7	0.1	0.59	10.5	0.0	2.1	2	0	0	2	2	2	0	FaeA-like	protein
Phage_integrase	PF00589.22	gi|336254308|ref|YP_004597415.1|	-	7.2e-07	29.2	0.0	2.9e-06	27.2	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|336254308|ref|YP_004597415.1|	-	0.066	13.7	2.6	40	4.8	0.0	3.9	4	1	1	5	5	5	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|336254308|ref|YP_004597415.1|	-	0.082	13.2	0.3	2.6	8.4	0.0	3.0	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|336254309|ref|YP_004597416.1|	-	3.7e-06	26.8	0.1	4.6e-05	23.3	0.1	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|336254309|ref|YP_004597416.1|	-	6.3e-06	26.4	0.3	2.6e-05	24.4	0.1	2.2	1	1	1	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|336254309|ref|YP_004597416.1|	-	3.1e-05	24.3	0.1	0.00067	20.1	0.1	2.5	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|336254309|ref|YP_004597416.1|	-	0.00014	22.1	0.0	0.00035	20.8	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Usp	PF00582.26	gi|336254312|ref|YP_004597419.1|	-	1.4e-34	119.6	2.7	1.5e-34	119.5	2.7	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|336254312|ref|YP_004597419.1|	-	0.0081	15.6	0.3	0.0099	15.3	0.3	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PTS_IIB	PF02302.17	gi|336254312|ref|YP_004597419.1|	-	0.051	14.3	0.1	0.12	13.0	0.0	1.8	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Nop14	PF04147.12	gi|336254314|ref|YP_004597421.1|	-	8.4	4.5	13.4	13	3.8	13.4	1.3	1	0	0	1	1	1	0	Nop14-like	family
BUD22	PF09073.10	gi|336254316|ref|YP_004597423.1|	-	2.4	7.4	50.8	3.4	6.9	50.8	1.3	1	0	0	1	1	1	0	BUD22
Lin-8	PF03353.15	gi|336254316|ref|YP_004597423.1|	-	2.7	7.5	19.5	2.9	7.3	19.5	1.2	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
PQQ_2	PF13360.6	gi|336254318|ref|YP_004597425.1|	-	5.6e-13	49.0	8.6	2.6e-07	30.5	1.2	2.6	1	1	1	2	2	2	2	PQQ-like	domain
PQQ	PF01011.21	gi|336254318|ref|YP_004597425.1|	-	7.6e-09	35.1	6.2	7.4e-05	22.5	0.1	4.7	5	0	0	5	5	5	2	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|336254318|ref|YP_004597425.1|	-	1e-06	29.0	21.2	0.04	14.4	0.1	7.3	8	0	0	8	8	8	3	PQQ-like	domain
DUF3209	PF11483.8	gi|336254319|ref|YP_004597426.1|	-	1.5e-55	187.0	2.7	1.6e-55	186.8	2.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3209)
IcmF-related	PF06761.12	gi|336254319|ref|YP_004597426.1|	-	0.028	13.9	0.0	0.033	13.7	0.0	1.0	1	0	0	1	1	1	0	Intracellular	multiplication	and	human	macrophage-killing
CbiX	PF01903.17	gi|336254320|ref|YP_004597427.1|	-	6.3e-42	142.3	0.0	1.2e-19	70.6	0.1	2.6	3	0	0	3	3	3	2	CbiX
2Fe-2S_thioredx	PF01257.19	gi|336254320|ref|YP_004597427.1|	-	2.4e-08	33.9	0.1	4.3e-08	33.1	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
CbiK	PF06180.11	gi|336254320|ref|YP_004597427.1|	-	0.00014	21.3	0.0	0.19	11.0	0.0	2.1	2	0	0	2	2	2	2	Cobalt	chelatase	(CbiK)
Suc_Fer-like	PF06999.12	gi|336254320|ref|YP_004597427.1|	-	0.00076	19.4	0.0	0.0019	18.1	0.0	1.7	1	1	0	2	2	2	1	Sucrase/ferredoxin-like
ETF_alpha	PF00766.19	gi|336254320|ref|YP_004597427.1|	-	0.16	12.0	0.0	10	6.2	0.0	2.9	2	1	1	3	3	3	0	Electron	transfer	flavoprotein	FAD-binding	domain
DUF1636	PF07845.11	gi|336254320|ref|YP_004597427.1|	-	0.18	12.2	0.5	8.1	6.9	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1636)
Castor1_N	PF18700.1	gi|336254321|ref|YP_004597428.1|	-	0.27	11.1	0.7	0.46	10.4	0.7	1.3	1	0	0	1	1	1	0	Cytosolic	arginine	sensor	for	mTORC1	subunit	1	N-terminal	domain
Fer4_15	PF13459.6	gi|336254322|ref|YP_004597429.1|	-	5.8e-18	65.4	8.9	7.3e-18	65.1	8.9	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|336254322|ref|YP_004597429.1|	-	0.0019	18.7	5.9	0.0037	17.8	5.9	1.6	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_19	PF06902.11	gi|336254322|ref|YP_004597429.1|	-	0.0086	16.1	0.2	1.8	8.7	0.1	2.1	1	1	1	2	2	2	2	Divergent	4Fe-4S	mono-cluster
Fer4_6	PF12837.7	gi|336254322|ref|YP_004597429.1|	-	1.4	9.1	7.2	8	6.7	0.1	3.5	4	0	0	4	4	4	0	4Fe-4S	binding	domain
TP_methylase	PF00590.20	gi|336254323|ref|YP_004597430.1|	-	1.6e-39	136.1	0.2	1.9e-39	135.8	0.2	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Macoilin	PF09726.9	gi|336254323|ref|YP_004597430.1|	-	0.14	10.7	7.7	0.17	10.5	7.7	1.1	1	0	0	1	1	1	0	Macoilin	family
SPX	PF03105.19	gi|336254323|ref|YP_004597430.1|	-	0.67	9.8	5.6	0.74	9.7	5.6	1.1	1	0	0	1	1	1	0	SPX	domain
Apt1	PF10351.9	gi|336254323|ref|YP_004597430.1|	-	0.87	8.4	9.7	1	8.1	9.7	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
TP_methylase	PF00590.20	gi|336254324|ref|YP_004597431.1|	-	8.8e-45	153.3	0.3	1.1e-44	153.0	0.3	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiG_N	PF11760.8	gi|336254325|ref|YP_004597432.1|	-	4.1e-27	94.0	0.0	1.4e-26	92.3	0.0	2.0	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|336254325|ref|YP_004597432.1|	-	1.1e-22	80.8	0.1	2.6e-22	79.5	0.0	1.7	2	0	0	2	2	2	1	Cobalamin	synthesis	G	C-terminus
AIRS	PF00586.24	gi|336254325|ref|YP_004597432.1|	-	0.00084	20.0	1.4	0.0026	18.4	1.4	1.9	1	1	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
PQQ_2	PF13360.6	gi|336254326|ref|YP_004597433.1|	-	1.6e-65	221.0	15.3	2.3e-41	141.9	1.7	3.5	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|336254326|ref|YP_004597433.1|	-	1.7e-58	193.7	44.8	5e-12	45.9	0.4	9.4	10	0	0	10	10	10	8	PQQ-like	domain
PQQ	PF01011.21	gi|336254326|ref|YP_004597433.1|	-	5.4e-42	139.8	14.9	2.9e-09	36.4	0.0	8.5	8	0	0	8	8	8	7	PQQ	enzyme	repeat
Me-amine-dh_H	PF06433.11	gi|336254326|ref|YP_004597433.1|	-	0.023	13.5	0.1	2	7.2	0.0	3.0	2	1	0	3	3	3	0	Methylamine	dehydrogenase	heavy	chain	(MADH)
DUF4905	PF16248.5	gi|336254326|ref|YP_004597433.1|	-	0.057	13.3	0.1	13	5.7	0.0	3.6	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4905)
PGF-CTERM	PF18204.1	gi|336254326|ref|YP_004597433.1|	-	0.095	12.7	0.4	0.18	11.8	0.4	1.5	1	0	0	1	1	1	0	PGF-CTERM	motif
Glyco_hyd_101C	PF17451.2	gi|336254326|ref|YP_004597433.1|	-	4.6	7.6	6.9	64	3.9	0.3	4.6	4	1	1	6	6	6	0	Glycosyl	hydrolase	101	beta	sandwich	domain
Wtap	PF17098.5	gi|336254327|ref|YP_004597434.1|	-	0.74	9.7	4.0	13	5.7	0.0	2.6	2	0	0	2	2	2	0	WTAP/Mum2p	family
RNase_II_C_S1	PF18614.1	gi|336254329|ref|YP_004597436.1|	-	0.32	11.0	5.8	0.16	11.9	0.7	2.4	2	1	1	3	3	3	0	RNase	II-type	exonuclease	C-terminal	S1	domain
CHD5	PF04420.14	gi|336254331|ref|YP_004597438.1|	-	0.21	11.5	0.3	0.4	10.5	0.3	1.5	1	0	0	1	1	1	0	CHD5-like	protein
Phage_holin_2_2	PF10746.9	gi|336254331|ref|YP_004597438.1|	-	1.1	8.9	3.6	0.58	9.9	0.5	2.1	2	0	0	2	2	2	0	Phage	holin	T7	family,	holin	superfamily	II
LapA_dom	PF06305.11	gi|336254331|ref|YP_004597438.1|	-	1.2	9.1	0.0	1.2	9.1	0.0	3.3	3	0	0	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
T2SSF	PF00482.23	gi|336254331|ref|YP_004597438.1|	-	2.1	8.3	20.5	0.055	13.4	2.5	3.9	4	1	1	5	5	5	0	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|336254332|ref|YP_004597439.1|	-	5e-35	120.9	0.0	8.3e-35	120.2	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|336254332|ref|YP_004597439.1|	-	0.0003	21.3	0.0	0.00054	20.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_16	PF13191.6	gi|336254332|ref|YP_004597439.1|	-	0.0049	17.3	0.5	0.032	14.6	0.1	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336254332|ref|YP_004597439.1|	-	0.0088	15.8	0.1	0.024	14.4	0.1	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|336254332|ref|YP_004597439.1|	-	0.024	14.2	0.2	0.12	11.9	0.1	2.3	3	0	0	3	3	3	0	AAA	domain
cobW	PF02492.19	gi|336254332|ref|YP_004597439.1|	-	0.039	13.5	0.0	0.072	12.7	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|336254332|ref|YP_004597439.1|	-	0.059	12.7	0.0	0.11	11.7	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
TrwB_AAD_bind	PF10412.9	gi|336254332|ref|YP_004597439.1|	-	0.07	12.0	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_14	PF13173.6	gi|336254332|ref|YP_004597439.1|	-	0.087	12.9	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF1449	PF07290.11	gi|336254333|ref|YP_004597440.1|	-	0.046	13.3	0.0	0.064	12.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1449)
SecE	PF00584.20	gi|336254333|ref|YP_004597440.1|	-	0.22	11.4	0.4	0.43	10.5	0.4	1.5	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Dynamitin	PF04912.14	gi|336254334|ref|YP_004597441.1|	-	0.0012	18.3	2.4	0.17	11.1	0.1	2.2	1	1	1	2	2	2	2	Dynamitin
BLOC1_2	PF10046.9	gi|336254334|ref|YP_004597441.1|	-	0.0014	18.9	1.2	0.076	13.3	0.1	2.4	1	1	1	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ABC_tran_CTD	PF16326.5	gi|336254334|ref|YP_004597441.1|	-	0.003	17.8	1.5	0.051	13.8	0.7	2.5	1	1	1	2	2	2	2	ABC	transporter	C-terminal	domain
Lebercilin	PF15619.6	gi|336254334|ref|YP_004597441.1|	-	0.004	16.8	0.3	0.006	16.3	0.3	1.3	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Tropomyosin_1	PF12718.7	gi|336254334|ref|YP_004597441.1|	-	0.0049	17.0	2.4	0.0076	16.4	1.7	1.6	1	1	0	1	1	1	1	Tropomyosin	like
Cep57_CLD_2	PF14197.6	gi|336254334|ref|YP_004597441.1|	-	0.007	16.4	4.9	0.022	14.9	3.1	2.2	2	1	0	2	2	2	1	Centrosome	localisation	domain	of	PPC89
XhlA	PF10779.9	gi|336254334|ref|YP_004597441.1|	-	0.0076	16.4	5.9	0.25	11.6	0.3	3.2	2	1	1	3	3	3	1	Haemolysin	XhlA
FPP	PF05911.11	gi|336254334|ref|YP_004597441.1|	-	0.0081	14.4	0.0	0.01	14.1	0.0	1.1	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
FlaC_arch	PF05377.11	gi|336254334|ref|YP_004597441.1|	-	0.009	16.4	0.3	9.7	6.7	0.0	3.1	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
HSBP1	PF06825.12	gi|336254334|ref|YP_004597441.1|	-	0.01	15.7	0.9	4.7	7.2	0.0	2.8	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
TMF_TATA_bd	PF12325.8	gi|336254334|ref|YP_004597441.1|	-	0.011	15.9	1.4	3	8.1	0.4	2.2	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DHR10	PF18595.1	gi|336254334|ref|YP_004597441.1|	-	0.017	15.1	3.7	0.025	14.6	3.7	1.3	1	0	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
DUF745	PF05335.13	gi|336254334|ref|YP_004597441.1|	-	0.018	14.8	0.5	0.029	14.1	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
Syntaxin-6_N	PF09177.11	gi|336254334|ref|YP_004597441.1|	-	0.019	15.5	1.0	0.047	14.2	1.1	1.6	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Trimer_CC	PF08954.11	gi|336254334|ref|YP_004597441.1|	-	0.02	14.4	10.6	0.87	9.2	1.0	3.5	3	0	0	3	3	3	0	Trimerisation	motif
Spectrin	PF00435.21	gi|336254334|ref|YP_004597441.1|	-	0.027	15.0	0.7	0.076	13.5	0.7	1.7	1	1	0	1	1	1	0	Spectrin	repeat
DUF3450	PF11932.8	gi|336254334|ref|YP_004597441.1|	-	0.028	13.8	0.3	0.11	11.8	0.2	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
DUF1664	PF07889.12	gi|336254334|ref|YP_004597441.1|	-	0.029	14.4	0.5	0.063	13.3	0.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
TolA_bind_tri	PF16331.5	gi|336254334|ref|YP_004597441.1|	-	0.037	14.1	2.5	6.4	6.9	0.5	2.6	1	1	2	3	3	3	0	TolA	binding	protein	trimerisation
DASH_Spc19	PF08287.11	gi|336254334|ref|YP_004597441.1|	-	0.041	13.8	0.4	1.6	8.6	0.0	2.2	1	1	1	2	2	2	0	Spc19
Myosin_tail_1	PF01576.19	gi|336254334|ref|YP_004597441.1|	-	0.043	11.6	2.8	0.079	10.8	2.8	1.3	1	1	0	1	1	1	0	Myosin	tail
PspA_IM30	PF04012.12	gi|336254334|ref|YP_004597441.1|	-	0.047	13.3	6.2	0.42	10.1	0.4	2.2	1	1	1	2	2	2	0	PspA/IM30	family
MutS_III	PF05192.18	gi|336254334|ref|YP_004597441.1|	-	0.055	13.7	0.1	0.055	13.7	0.1	1.2	1	0	0	1	1	1	0	MutS	domain	III
ERM	PF00769.19	gi|336254334|ref|YP_004597441.1|	-	0.056	13.3	0.1	0.059	13.2	0.1	1.1	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Lzipper-MIP1	PF14389.6	gi|336254334|ref|YP_004597441.1|	-	0.06	13.7	1.7	0.15	12.3	0.9	2.2	1	1	1	2	2	2	0	Leucine-zipper	of	ternary	complex	factor	MIP1
NPV_P10	PF05531.12	gi|336254334|ref|YP_004597441.1|	-	0.061	13.8	3.1	1.2	9.7	0.6	2.8	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.11	gi|336254334|ref|YP_004597441.1|	-	0.07	12.0	0.7	0.099	11.5	0.7	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
SlyX	PF04102.12	gi|336254334|ref|YP_004597441.1|	-	0.074	13.7	4.8	1.9	9.2	1.7	3.1	1	1	1	2	2	2	0	SlyX
Prefoldin_2	PF01920.20	gi|336254334|ref|YP_004597441.1|	-	0.076	13.0	0.5	6.9	6.7	0.3	2.5	1	1	1	2	2	2	0	Prefoldin	subunit
TMF_DNA_bd	PF12329.8	gi|336254334|ref|YP_004597441.1|	-	0.083	12.9	1.5	1.7	8.7	0.1	2.6	2	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
Baculo_PEP_C	PF04513.12	gi|336254334|ref|YP_004597441.1|	-	0.1	12.6	0.1	0.42	10.7	0.1	1.7	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DivIC	PF04977.15	gi|336254334|ref|YP_004597441.1|	-	0.11	12.3	2.0	9.4	6.1	0.1	2.3	1	1	1	2	2	2	0	Septum	formation	initiator
Golgin_A5	PF09787.9	gi|336254334|ref|YP_004597441.1|	-	0.13	11.7	0.6	0.16	11.4	0.6	1.1	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
DUF1515	PF07439.11	gi|336254334|ref|YP_004597441.1|	-	0.13	12.3	1.1	0.35	10.9	0.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
DUF3138	PF11336.8	gi|336254334|ref|YP_004597441.1|	-	0.13	10.8	0.0	0.13	10.8	0.0	1.4	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3138)
Fez1	PF06818.15	gi|336254334|ref|YP_004597441.1|	-	0.14	12.5	0.1	0.17	12.3	0.1	1.2	1	0	0	1	1	1	0	Fez1
Phage_GP20	PF06810.11	gi|336254334|ref|YP_004597441.1|	-	0.15	11.9	0.2	0.34	10.7	0.1	1.6	1	1	0	1	1	1	0	Phage	minor	structural	protein	GP20
TRAF_BIRC3_bd	PF16673.5	gi|336254334|ref|YP_004597441.1|	-	0.16	11.8	2.6	0.22	11.3	1.3	1.9	2	0	0	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
Vir_act_alpha_C	PF10400.9	gi|336254334|ref|YP_004597441.1|	-	0.17	12.6	3.1	3.7	8.3	0.4	2.4	1	1	1	2	2	2	0	Virulence	activator	alpha	C-term
Streptin-Immun	PF11083.8	gi|336254334|ref|YP_004597441.1|	-	0.19	12.1	0.4	0.31	11.5	0.4	1.3	1	0	0	1	1	1	0	Lantibiotic	streptin	immunity	protein
DUF4407	PF14362.6	gi|336254334|ref|YP_004597441.1|	-	0.2	11.0	1.6	0.35	10.2	1.5	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF2730	PF10805.8	gi|336254334|ref|YP_004597441.1|	-	0.27	11.3	0.8	2.6	8.2	0.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
Tropomyosin	PF00261.20	gi|336254334|ref|YP_004597441.1|	-	0.33	10.3	9.5	4.6	6.5	9.3	2.3	1	1	0	1	1	1	0	Tropomyosin
ATG16	PF08614.11	gi|336254334|ref|YP_004597441.1|	-	0.37	11.0	3.9	1.3	9.2	4.0	1.8	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
CLZ	PF16526.5	gi|336254334|ref|YP_004597441.1|	-	0.38	11.1	6.6	7	7.1	0.1	2.9	2	1	1	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
MRF_C1	PF13887.6	gi|336254334|ref|YP_004597441.1|	-	0.49	9.6	4.7	27	4.0	0.1	3.4	3	0	0	3	3	3	0	Myelin	gene	regulatory	factor	-C-terminal	domain	1
FUSC	PF04632.12	gi|336254334|ref|YP_004597441.1|	-	0.69	8.4	2.7	0.9	8.0	2.7	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
HalX	PF08663.10	gi|336254334|ref|YP_004597441.1|	-	1.9	8.8	17.2	3.1	8.2	1.5	3.3	1	1	2	3	3	3	0	HalX	domain
CENP-Q	PF13094.6	gi|336254334|ref|YP_004597441.1|	-	5.1	7.3	6.5	58	3.8	6.4	2.3	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF87	PF01935.17	gi|336254335|ref|YP_004597442.1|	-	4.1e-06	27.1	0.0	2.1e-05	24.8	0.0	2.0	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|336254335|ref|YP_004597442.1|	-	6.4e-05	21.7	0.3	0.032	12.8	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_16	PF13191.6	gi|336254335|ref|YP_004597442.1|	-	0.0022	18.4	3.2	0.0097	16.3	0.3	2.4	1	1	1	2	2	2	1	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.9	gi|336254335|ref|YP_004597442.1|	-	0.0038	16.2	0.0	0.3	9.9	0.0	2.1	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.29	gi|336254335|ref|YP_004597442.1|	-	0.0049	17.3	0.0	4.4	7.7	0.1	2.7	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|336254335|ref|YP_004597442.1|	-	0.011	16.1	0.1	5	7.4	0.0	2.7	2	1	0	3	3	3	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|336254335|ref|YP_004597442.1|	-	0.02	14.3	0.4	4.5	6.6	0.1	2.5	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
Zot	PF05707.12	gi|336254335|ref|YP_004597442.1|	-	0.03	14.0	0.0	0.94	9.1	0.0	2.4	2	1	1	3	3	3	0	Zonular	occludens	toxin	(Zot)
Zeta_toxin	PF06414.12	gi|336254335|ref|YP_004597442.1|	-	0.079	12.2	0.0	0.17	11.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
YtkA	PF13115.6	gi|336254336|ref|YP_004597443.1|	-	0.014	16.0	2.5	0.032	14.8	2.5	1.7	1	1	0	1	1	1	0	YtkA-like
CarboxypepD_reg	PF13620.6	gi|336254336|ref|YP_004597443.1|	-	0.12	12.6	2.7	0.13	12.5	1.0	1.9	3	0	0	3	3	3	0	Carboxypeptidase	regulatory-like	domain
DUF4604	PF15377.6	gi|336254336|ref|YP_004597443.1|	-	1.1	9.7	5.2	0.54	10.7	3.4	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4604)
ABC2_membrane_3	PF12698.7	gi|336254337|ref|YP_004597444.1|	-	6.2e-11	42.0	0.0	9.6e-11	41.4	0.0	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336254337|ref|YP_004597444.1|	-	1.5e-06	27.7	7.6	1.9e-06	27.4	7.2	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336254337|ref|YP_004597444.1|	-	1.8e-05	24.3	7.7	1.8e-05	24.3	7.7	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|336254337|ref|YP_004597444.1|	-	8.8e-05	22.5	4.0	8.8e-05	22.5	4.0	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336254338|ref|YP_004597445.1|	-	2.4e-06	27.0	3.9	2.4e-06	27.0	3.9	2.6	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336254338|ref|YP_004597445.1|	-	2.8	7.0	29.2	0.011	14.9	17.0	2.2	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|336254339|ref|YP_004597446.1|	-	5.7e-29	101.4	0.0	1.6e-28	99.9	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|336254339|ref|YP_004597446.1|	-	2.2e-14	54.0	0.0	8.6e-09	35.6	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336254339|ref|YP_004597446.1|	-	2.6e-12	47.3	0.2	4.8e-12	46.4	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|336254339|ref|YP_004597446.1|	-	0.00021	21.1	0.4	0.001	18.8	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|336254339|ref|YP_004597446.1|	-	0.0069	16.9	0.5	0.029	14.9	0.1	2.0	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|336254339|ref|YP_004597446.1|	-	0.014	15.6	0.0	0.049	13.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|336254339|ref|YP_004597446.1|	-	0.016	15.0	0.0	0.78	9.4	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
SMC_N	PF02463.19	gi|336254339|ref|YP_004597446.1|	-	0.016	14.7	0.0	4.2	6.8	0.0	2.3	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_24	PF13479.6	gi|336254339|ref|YP_004597446.1|	-	0.019	14.7	1.2	0.61	9.8	0.1	2.8	3	0	0	3	3	3	0	AAA	domain
SRP54	PF00448.22	gi|336254339|ref|YP_004597446.1|	-	0.026	14.1	0.5	0.053	13.2	0.5	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_13	PF13166.6	gi|336254339|ref|YP_004597446.1|	-	0.073	11.7	0.1	8.3	4.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|336254339|ref|YP_004597446.1|	-	0.1	12.4	0.1	0.19	11.5	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|336254339|ref|YP_004597446.1|	-	0.14	11.8	0.0	0.3	10.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336254339|ref|YP_004597446.1|	-	0.19	12.1	0.8	0.91	10.0	0.8	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|336254339|ref|YP_004597446.1|	-	0.37	11.0	4.2	0.53	10.5	0.4	2.7	2	1	1	3	3	3	0	AAA	domain
HxlR	PF01638.17	gi|336254340|ref|YP_004597447.1|	-	2.6e-20	72.0	0.0	3.2e-20	71.8	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|336254340|ref|YP_004597447.1|	-	2.4e-06	27.6	0.0	3.3e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_27	PF13463.6	gi|336254340|ref|YP_004597447.1|	-	3.9e-05	24.1	0.0	5.5e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|336254340|ref|YP_004597447.1|	-	0.00041	20.1	0.0	0.00054	19.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|336254340|ref|YP_004597447.1|	-	0.002	18.1	0.0	0.0031	17.5	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR	PF01047.22	gi|336254340|ref|YP_004597447.1|	-	0.0089	15.9	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336254340|ref|YP_004597447.1|	-	0.013	15.4	0.0	0.019	14.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|336254340|ref|YP_004597447.1|	-	0.015	15.3	0.1	0.022	14.8	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Trp_repressor	PF01371.19	gi|336254340|ref|YP_004597447.1|	-	0.023	14.8	0.0	0.034	14.3	0.0	1.2	1	0	0	1	1	1	0	Trp	repressor	protein
HTH_45	PF14947.6	gi|336254340|ref|YP_004597447.1|	-	0.034	14.1	0.0	0.049	13.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
TrmB	PF01978.19	gi|336254340|ref|YP_004597447.1|	-	0.042	13.7	0.0	0.057	13.3	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
OGFr_N	PF04664.13	gi|336254340|ref|YP_004597447.1|	-	0.11	12.0	0.0	0.15	11.6	0.0	1.1	1	0	0	1	1	1	0	Opioid	growth	factor	receptor	(OGFr)	conserved	region
Replic_Relax	PF13814.6	gi|336254340|ref|YP_004597447.1|	-	0.12	12.4	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
DUF4364	PF14277.6	gi|336254340|ref|YP_004597447.1|	-	0.24	11.1	0.0	0.33	10.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
UPF0179	PF03684.13	gi|336254341|ref|YP_004597448.1|	-	1.7e-48	164.1	0.0	1.9e-48	163.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.6	gi|336254341|ref|YP_004597448.1|	-	0.012	15.9	0.2	0.021	15.0	0.0	1.5	2	0	0	2	2	2	0	Transposase	DDE	domain
MelC1	PF06236.11	gi|336254341|ref|YP_004597448.1|	-	0.015	15.4	0.0	0.024	14.7	0.0	1.4	1	0	0	1	1	1	0	Tyrosinase	co-factor	MelC1
DUF2188	PF09954.9	gi|336254342|ref|YP_004597449.1|	-	0.11	12.7	0.3	0.19	11.9	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
PrkA	PF06798.12	gi|336254343|ref|YP_004597450.1|	-	9.7e-72	241.7	8.2	9.7e-72	241.7	8.2	1.9	2	0	0	2	2	2	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.11	gi|336254343|ref|YP_004597450.1|	-	3.1e-63	213.9	0.0	4.8e-63	213.2	0.0	1.3	1	0	0	1	1	1	1	PrkA	AAA	domain
RasGAP_C	PF03836.15	gi|336254343|ref|YP_004597450.1|	-	0.057	13.6	0.7	9.1	6.4	0.1	2.7	2	0	0	2	2	2	0	RasGAP	C-terminus
AAA_18	PF13238.6	gi|336254343|ref|YP_004597450.1|	-	0.19	12.2	1.1	1.5	9.4	0.0	2.8	2	1	0	2	2	2	0	AAA	domain
PrkA	PF06798.12	gi|336254344|ref|YP_004597451.1|	-	6.5e-54	183.3	1.0	6.5e-54	183.3	1.0	2.6	3	0	0	3	3	3	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.11	gi|336254344|ref|YP_004597451.1|	-	1e-13	51.0	0.0	1.9e-10	40.2	0.0	3.2	2	1	0	2	2	2	2	PrkA	AAA	domain
DUF444	PF04285.12	gi|336254345|ref|YP_004597452.1|	-	1.4e-128	429.6	0.1	1.6e-128	429.4	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF444)
Tautomerase_2	PF14552.6	gi|336254345|ref|YP_004597452.1|	-	0.15	12.2	0.3	2.4	8.3	0.1	2.7	3	0	0	3	3	3	0	Tautomerase	enzyme
SpoVR	PF04293.13	gi|336254346|ref|YP_004597453.1|	-	8.5e-92	308.0	4.8	3.3e-77	259.9	0.9	2.2	2	0	0	2	2	2	2	SpoVR	like	protein
SOAR	PF16533.5	gi|336254346|ref|YP_004597453.1|	-	0.098	12.6	0.0	0.44	10.5	0.0	2.1	1	0	0	1	1	1	0	STIM1	Orai1-activating	region
HEAT_2	PF13646.6	gi|336254347|ref|YP_004597454.1|	-	1e-10	41.9	16.1	1.1e-06	29.0	6.5	2.4	2	1	0	2	2	2	2	HEAT	repeats
HEAT	PF02985.22	gi|336254347|ref|YP_004597454.1|	-	2.1e-06	27.5	13.5	0.084	13.2	0.2	4.8	5	0	0	5	5	5	3	HEAT	repeat
HEAT_EZ	PF13513.6	gi|336254347|ref|YP_004597454.1|	-	3.2e-06	27.5	15.1	2.8e-05	24.5	2.5	4.2	3	1	1	4	4	4	2	HEAT-like	repeat
Arm	PF00514.23	gi|336254347|ref|YP_004597454.1|	-	4.3e-06	26.6	3.1	0.34	11.0	0.2	3.4	3	0	0	3	3	3	2	Armadillo/beta-catenin-like	repeat
IFRD	PF05004.13	gi|336254347|ref|YP_004597454.1|	-	0.049	12.7	3.1	2.8	7.0	0.9	2.9	1	1	0	2	2	2	0	Interferon-related	developmental	regulator	(IFRD)
MMS19_N	PF14500.6	gi|336254347|ref|YP_004597454.1|	-	0.05	13.2	0.1	8.6	5.8	0.0	2.6	2	1	1	3	3	3	0	Dos2-interacting	transcription	regulator	of	RNA-Pol-II
Cnd1	PF12717.7	gi|336254347|ref|YP_004597454.1|	-	0.21	11.6	0.3	6.4	6.8	0.1	2.6	1	1	1	2	2	2	0	non-SMC	mitotic	condensation	complex	subunit	1
UPF0047	PF01894.17	gi|336254348|ref|YP_004597455.1|	-	4.7e-36	123.4	0.0	5.7e-36	123.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
GDPD	PF03009.17	gi|336254349|ref|YP_004597456.1|	-	1.6e-26	93.6	0.1	4.7e-25	88.8	0.1	2.0	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
Response_reg	PF00072.24	gi|336254350|ref|YP_004597457.1|	-	1.1e-21	77.0	0.0	1.3e-21	76.8	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
adh_short_C2	PF13561.6	gi|336254351|ref|YP_004597458.1|	-	7.6e-40	136.9	0.0	1.5e-39	135.9	0.0	1.4	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336254351|ref|YP_004597458.1|	-	4.9e-37	127.3	0.0	5.8e-37	127.0	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|336254351|ref|YP_004597458.1|	-	6e-08	32.4	0.0	2.4e-07	30.5	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|336254351|ref|YP_004597458.1|	-	3.1e-05	24.0	0.0	4.7e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	KR	domain
GDP_Man_Dehyd	PF16363.5	gi|336254351|ref|YP_004597458.1|	-	0.0025	17.3	0.0	0.0037	16.7	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336254351|ref|YP_004597458.1|	-	0.009	15.1	0.1	0.011	14.8	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|336254351|ref|YP_004597458.1|	-	0.019	14.8	0.1	0.038	13.9	0.1	1.5	1	0	0	1	1	1	0	NAD(P)H-binding
3Beta_HSD	PF01073.19	gi|336254351|ref|YP_004597458.1|	-	0.091	11.7	0.0	0.13	11.2	0.0	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
LAT	PF15234.6	gi|336254352|ref|YP_004597459.1|	-	0.0083	15.9	1.5	0.011	15.5	1.5	1.1	1	0	0	1	1	1	1	Linker	for	activation	of	T-cells
HTH_32	PF13565.6	gi|336254352|ref|YP_004597459.1|	-	0.021	15.4	0.1	0.045	14.4	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
TrmB	PF01978.19	gi|336254353|ref|YP_004597460.1|	-	1.9e-06	27.7	0.5	2.6e-06	27.2	0.5	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|336254353|ref|YP_004597460.1|	-	0.053	14.0	0.1	0.067	13.7	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Gln-synt_C	PF00120.24	gi|336254354|ref|YP_004597461.1|	-	2.1e-140	467.7	0.0	2.7e-140	467.3	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|336254354|ref|YP_004597461.1|	-	3.6e-32	109.9	0.0	8.6e-32	108.7	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|336254354|ref|YP_004597461.1|	-	3.9e-05	23.4	0.1	0.0003	20.6	0.1	2.2	1	1	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
Terminase_GpA	PF05876.12	gi|336254355|ref|YP_004597462.1|	-	0.0013	17.4	0.4	0.0013	17.4	0.4	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zinc_ribbon_10	PF10058.9	gi|336254355|ref|YP_004597462.1|	-	0.0049	16.6	0.1	0.009	15.7	0.1	1.4	1	1	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF2197	PF09963.9	gi|336254355|ref|YP_004597462.1|	-	0.035	14.4	4.4	0.31	11.3	3.9	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
Thioredoxin	PF00085.20	gi|336254356|ref|YP_004597463.1|	-	1.2e-10	41.3	0.0	1.5e-10	41.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
TraF	PF13728.6	gi|336254356|ref|YP_004597463.1|	-	3.9e-05	23.6	0.0	0.00029	20.8	0.0	1.9	1	1	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_2	PF13098.6	gi|336254356|ref|YP_004597463.1|	-	0.00086	19.7	0.0	0.049	14.1	0.0	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|336254356|ref|YP_004597463.1|	-	0.011	15.8	0.0	0.015	15.3	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin	domain
HyaE	PF07449.11	gi|336254356|ref|YP_004597463.1|	-	0.048	13.6	0.0	0.081	12.9	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Phosducin	PF02114.16	gi|336254356|ref|YP_004597463.1|	-	0.065	12.2	0.0	0.074	12.0	0.0	1.1	1	0	0	1	1	1	0	Phosducin
Mrr_N	PF14338.6	gi|336254357|ref|YP_004597464.1|	-	0.0021	18.2	0.0	0.0043	17.1	0.0	1.5	2	0	0	2	2	2	1	Mrr	N-terminal	domain
HTH_20	PF12840.7	gi|336254357|ref|YP_004597464.1|	-	0.0071	16.4	0.0	0.01	15.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
PGF-CTERM	PF18204.1	gi|336254360|ref|YP_004597467.1|	-	0.0011	18.9	3.0	0.0027	17.6	3.0	1.7	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF4091	PF13320.6	gi|336254360|ref|YP_004597467.1|	-	0.16	12.1	1.7	0.75	10.0	0.3	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4091)
SDA1	PF05285.12	gi|336254360|ref|YP_004597467.1|	-	9.1	5.6	11.9	13	5.1	11.9	1.1	1	0	0	1	1	1	0	SDA1
DEAD_assoc	PF08494.11	gi|336254362|ref|YP_004597469.1|	-	8.7e-37	126.8	0.4	2.8e-36	125.1	0.1	2.1	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.29	gi|336254362|ref|YP_004597469.1|	-	2.4e-29	102.3	0.0	5.7e-29	101.1	0.0	1.6	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|336254362|ref|YP_004597469.1|	-	1.9e-22	79.7	0.0	2.3e-21	76.2	0.1	2.5	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|336254362|ref|YP_004597469.1|	-	3.7e-07	30.3	0.0	7.7e-07	29.3	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.6	gi|336254362|ref|YP_004597469.1|	-	6e-05	22.7	1.7	0.00028	20.5	0.1	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|336254362|ref|YP_004597469.1|	-	0.00047	20.5	0.0	0.0041	17.5	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
UvrD-helicase	PF00580.21	gi|336254362|ref|YP_004597469.1|	-	0.0064	16.1	0.0	0.011	15.2	0.0	1.3	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
SNF2_N	PF00176.23	gi|336254362|ref|YP_004597469.1|	-	0.042	12.6	0.0	0.15	10.7	0.0	1.8	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
HypA	PF01155.19	gi|336254362|ref|YP_004597469.1|	-	0.06	13.4	0.5	0.3	11.1	0.2	2.2	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
AAA_22	PF13401.6	gi|336254362|ref|YP_004597469.1|	-	0.078	13.2	0.3	0.96	9.7	0.3	2.6	1	1	0	1	1	1	0	AAA	domain
Zn-ribbon_8	PF09723.10	gi|336254362|ref|YP_004597469.1|	-	0.15	12.2	0.5	0.39	10.9	0.5	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF116	PF01976.17	gi|336254362|ref|YP_004597469.1|	-	0.19	11.2	0.2	0.37	10.3	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF116
HATPase_c	PF02518.26	gi|336254363|ref|YP_004597470.1|	-	2.6e-28	98.8	0.0	2.6e-27	95.6	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|336254363|ref|YP_004597470.1|	-	9.9e-25	86.7	0.0	1.3e-14	54.1	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|336254363|ref|YP_004597470.1|	-	6.6e-22	77.7	0.0	5.6e-10	39.4	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|336254363|ref|YP_004597470.1|	-	8.1e-17	61.5	0.0	5.6e-13	49.1	0.0	3.0	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|336254363|ref|YP_004597470.1|	-	1.5e-15	56.7	0.0	7.4e-09	35.4	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
GAF_2	PF13185.6	gi|336254363|ref|YP_004597470.1|	-	1.7e-14	54.3	0.4	7.4e-14	52.2	0.4	2.2	1	0	0	1	1	1	1	GAF	domain
PAS_3	PF08447.12	gi|336254363|ref|YP_004597470.1|	-	2.4e-11	43.8	0.0	6.7e-06	26.3	0.0	4.0	3	1	0	3	3	3	2	PAS	fold
HisKA	PF00512.25	gi|336254363|ref|YP_004597470.1|	-	2.1e-10	40.5	0.1	2.1e-10	40.5	0.1	2.7	2	1	1	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|336254363|ref|YP_004597470.1|	-	7.3e-10	39.6	0.1	1.5e-09	38.5	0.1	1.6	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336254363|ref|YP_004597470.1|	-	8.7e-10	39.0	0.0	2e-09	37.9	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|336254363|ref|YP_004597470.1|	-	0.00021	21.1	0.0	0.00039	20.3	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|336254363|ref|YP_004597470.1|	-	0.0014	18.4	0.0	0.0028	17.5	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|336254363|ref|YP_004597470.1|	-	0.0027	17.7	0.0	0.0059	16.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
ApoLp-III	PF07464.11	gi|336254363|ref|YP_004597470.1|	-	0.074	13.1	0.3	11	6.1	0.0	2.3	2	0	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
GlnD_UR_UTase	PF08335.11	gi|336254363|ref|YP_004597470.1|	-	0.24	11.5	1.2	0.43	10.7	1.2	1.4	1	0	0	1	1	1	0	GlnD	PII-uridylyltransferase
bZIP_2	PF07716.15	gi|336254363|ref|YP_004597470.1|	-	9.5	6.4	6.9	13	6.0	2.3	2.3	2	0	0	2	2	2	0	Basic	region	leucine	zipper
Response_reg	PF00072.24	gi|336254364|ref|YP_004597471.1|	-	1.9e-13	50.6	0.0	2.2e-13	50.3	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.15	gi|336254364|ref|YP_004597471.1|	-	0.015	15.5	0.1	0.022	15.0	0.1	1.3	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Methyltransf_25	PF13649.6	gi|336254364|ref|YP_004597471.1|	-	0.022	15.4	0.1	0.032	14.9	0.1	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
PS_Dcarbxylase	PF02666.15	gi|336254365|ref|YP_004597472.1|	-	2.7e-20	72.8	0.4	3.4e-17	62.7	0.4	2.8	1	1	0	1	1	1	1	Phosphatidylserine	decarboxylase
Peptidase_M23	PF01551.22	gi|336254365|ref|YP_004597472.1|	-	0.044	14.0	0.4	60	3.9	0.0	3.8	3	1	1	4	4	4	0	Peptidase	family	M23
RnfC_N	PF13375.6	gi|336254365|ref|YP_004597472.1|	-	0.06	13.3	0.2	15	5.7	0.0	2.8	2	1	0	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
Catalase	PF00199.19	gi|336254366|ref|YP_004597473.1|	-	6.2e-172	572.0	0.3	8.1e-172	571.6	0.3	1.1	1	0	0	1	1	1	1	Catalase
Catalase-rel	PF06628.12	gi|336254366|ref|YP_004597473.1|	-	1.3e-22	79.8	0.3	2.8e-22	78.7	0.3	1.6	1	0	0	1	1	1	1	Catalase-related	immune-responsive
Catalase_C	PF18011.1	gi|336254366|ref|YP_004597473.1|	-	1.6e-21	76.6	0.2	2.5e-21	75.9	0.2	1.3	1	0	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
DJ-1_PfpI	PF01965.24	gi|336254366|ref|YP_004597473.1|	-	3.4e-10	40.0	0.6	6.3e-10	39.1	0.6	1.4	1	0	0	1	1	1	1	DJ-1/PfpI	family
BAT	PF15915.5	gi|336254368|ref|YP_004597475.1|	-	3.5e-23	82.2	0.4	7.5e-23	81.1	0.1	1.6	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336254368|ref|YP_004597475.1|	-	8.8e-18	63.9	0.1	1.9e-17	62.8	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_AraC	PF00165.23	gi|336254368|ref|YP_004597475.1|	-	0.00054	20.0	0.1	0.0029	17.7	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
TetR_N	PF00440.23	gi|336254368|ref|YP_004597475.1|	-	0.0019	17.9	0.0	0.0047	16.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
MarR_2	PF12802.7	gi|336254368|ref|YP_004597475.1|	-	0.0032	17.3	0.1	0.0067	16.3	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_3	PF01381.22	gi|336254368|ref|YP_004597475.1|	-	0.0042	17.1	0.0	0.0088	16.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_Crp_2	PF13545.6	gi|336254368|ref|YP_004597475.1|	-	0.0045	16.9	0.0	0.0095	15.9	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254368|ref|YP_004597475.1|	-	0.006	16.1	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Phage_CI_repr	PF07022.13	gi|336254368|ref|YP_004597475.1|	-	0.017	15.2	0.0	0.037	14.1	0.0	1.5	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254368|ref|YP_004597475.1|	-	0.021	14.9	0.0	0.044	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|336254368|ref|YP_004597475.1|	-	0.025	14.4	0.0	0.22	11.3	0.0	2.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|336254368|ref|YP_004597475.1|	-	0.026	14.3	0.0	0.063	13.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.6	gi|336254368|ref|YP_004597475.1|	-	0.03	14.1	0.1	0.055	13.3	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_psq	PF05225.16	gi|336254368|ref|YP_004597475.1|	-	0.038	13.7	0.1	0.11	12.3	0.1	1.8	1	1	0	1	1	1	0	helix-turn-helix,	Psq	domain
Sigma70_r4	PF04545.16	gi|336254368|ref|YP_004597475.1|	-	0.042	13.4	0.1	0.11	12.1	0.1	1.7	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|336254368|ref|YP_004597475.1|	-	0.087	12.8	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_17	PF12728.7	gi|336254368|ref|YP_004597475.1|	-	0.13	12.5	0.0	0.29	11.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA	PF00004.29	gi|336254369|ref|YP_004597476.1|	-	6.2e-95	314.6	0.0	1.6e-46	158.0	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|336254369|ref|YP_004597476.1|	-	3e-26	90.9	3.5	7.3e-13	48.1	1.8	2.8	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|336254369|ref|YP_004597476.1|	-	9.3e-23	80.2	1.0	5.2e-22	77.8	0.6	2.5	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|336254369|ref|YP_004597476.1|	-	1.2e-15	57.6	0.0	3.6e-07	30.1	0.0	3.5	4	0	0	4	4	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|336254369|ref|YP_004597476.1|	-	2.1e-14	54.2	0.8	1.3e-05	25.6	0.1	4.0	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|336254369|ref|YP_004597476.1|	-	6.1e-14	52.5	0.0	5.7e-07	29.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.6	gi|336254369|ref|YP_004597476.1|	-	1.2e-13	51.4	0.0	6.3e-07	29.6	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|336254369|ref|YP_004597476.1|	-	2.7e-12	46.8	0.5	6.7e-05	22.9	0.0	3.8	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|336254369|ref|YP_004597476.1|	-	8.3e-10	39.1	0.1	0.0037	17.5	0.0	3.4	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|336254369|ref|YP_004597476.1|	-	8e-09	35.6	0.0	0.0031	17.6	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|336254369|ref|YP_004597476.1|	-	1.8e-08	34.0	0.0	0.0025	17.1	0.0	2.3	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_18	PF13238.6	gi|336254369|ref|YP_004597476.1|	-	5.5e-08	33.4	0.0	0.012	16.1	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
CDC48_2	PF02933.17	gi|336254369|ref|YP_004597476.1|	-	8.1e-08	31.9	0.3	8.1e-08	31.9	0.3	2.0	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_28	PF13521.6	gi|336254369|ref|YP_004597476.1|	-	1.4e-07	31.9	1.2	0.016	15.5	0.0	3.5	3	0	0	3	3	2	2	AAA	domain
AAA_3	PF07726.11	gi|336254369|ref|YP_004597476.1|	-	3.1e-07	30.3	0.0	0.025	14.4	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|336254369|ref|YP_004597476.1|	-	6.2e-07	29.8	0.0	0.02	15.3	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.17	gi|336254369|ref|YP_004597476.1|	-	8.8e-07	28.8	0.0	0.033	13.9	0.0	2.6	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|336254369|ref|YP_004597476.1|	-	1.5e-06	27.7	0.3	0.062	12.7	0.2	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
ABC_tran	PF00005.27	gi|336254369|ref|YP_004597476.1|	-	1.6e-06	28.6	0.0	0.044	14.3	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
TsaE	PF02367.17	gi|336254369|ref|YP_004597476.1|	-	2.5e-06	27.5	0.0	0.11	12.6	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Zeta_toxin	PF06414.12	gi|336254369|ref|YP_004597476.1|	-	1.4e-05	24.5	0.0	0.032	13.5	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
Sigma54_activat	PF00158.26	gi|336254369|ref|YP_004597476.1|	-	1.6e-05	24.7	0.0	0.31	10.7	0.0	2.9	3	0	0	3	3	2	2	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|336254369|ref|YP_004597476.1|	-	3.7e-05	23.6	0.0	0.26	11.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|336254369|ref|YP_004597476.1|	-	4.2e-05	23.1	0.0	0.076	12.5	0.0	2.3	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|336254369|ref|YP_004597476.1|	-	4.8e-05	23.2	0.0	0.3	10.8	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_19	PF13245.6	gi|336254369|ref|YP_004597476.1|	-	0.0001	22.7	0.0	0.07	13.5	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|336254369|ref|YP_004597476.1|	-	0.00012	21.9	0.1	0.76	9.5	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
DUF815	PF05673.13	gi|336254369|ref|YP_004597476.1|	-	0.00015	21.0	0.0	0.29	10.3	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Parvo_NS1	PF01057.17	gi|336254369|ref|YP_004597476.1|	-	0.00018	20.7	0.0	0.19	10.8	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF2075	PF09848.9	gi|336254369|ref|YP_004597476.1|	-	0.0002	20.8	0.0	0.42	9.8	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|336254369|ref|YP_004597476.1|	-	0.0002	21.3	0.3	0.7	9.8	0.1	3.6	4	0	0	4	4	3	1	NACHT	domain
PhoH	PF02562.16	gi|336254369|ref|YP_004597476.1|	-	0.00021	20.8	0.0	0.79	9.1	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
Sigma54_activ_2	PF14532.6	gi|336254369|ref|YP_004597476.1|	-	0.00029	21.0	0.0	1.2	9.3	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|336254369|ref|YP_004597476.1|	-	0.00057	19.1	0.0	0.44	9.7	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
ATPase	PF06745.13	gi|336254369|ref|YP_004597476.1|	-	0.0012	18.3	0.0	1.7	7.9	0.0	2.8	2	0	0	2	2	2	2	KaiC
DEAD	PF00270.29	gi|336254369|ref|YP_004597476.1|	-	0.0018	18.1	0.4	11	5.8	0.0	3.9	2	2	2	4	4	4	0	DEAD/DEAH	box	helicase
AAA_17	PF13207.6	gi|336254369|ref|YP_004597476.1|	-	0.0034	17.8	0.0	2.1	8.8	0.0	3.6	3	1	0	3	3	2	1	AAA	domain
AAA_25	PF13481.6	gi|336254369|ref|YP_004597476.1|	-	0.0034	17.0	9.3	1.7	8.2	0.1	4.5	4	1	0	5	5	4	2	AAA	domain
SKI	PF01202.22	gi|336254369|ref|YP_004597476.1|	-	0.0091	16.1	0.0	1.3	9.1	0.0	2.6	2	0	0	2	2	2	1	Shikimate	kinase
ATPase_2	PF01637.18	gi|336254369|ref|YP_004597476.1|	-	0.0094	15.9	0.0	4.5	7.1	0.0	3.4	2	2	1	3	3	3	0	ATPase	domain	predominantly	from	Archaea
AFG1_ATPase	PF03969.16	gi|336254369|ref|YP_004597476.1|	-	0.015	14.2	0.0	1.3	7.9	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
TniB	PF05621.11	gi|336254369|ref|YP_004597476.1|	-	0.016	14.6	0.0	12	5.2	0.0	3.5	3	1	1	4	4	4	0	Bacterial	TniB	protein
CPT	PF07931.12	gi|336254369|ref|YP_004597476.1|	-	0.019	14.8	0.1	6.1	6.7	0.0	3.4	4	0	0	4	4	3	0	Chloramphenicol	phosphotransferase-like	protein
Cytidylate_kin	PF02224.18	gi|336254369|ref|YP_004597476.1|	-	0.024	14.4	0.0	8.6	6.0	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase
NTPase_1	PF03266.15	gi|336254369|ref|YP_004597476.1|	-	0.049	13.5	0.0	8.6	6.2	0.0	2.7	2	1	0	2	2	2	0	NTPase
Viral_helicase1	PF01443.18	gi|336254369|ref|YP_004597476.1|	-	0.059	13.1	0.0	5.8	6.6	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Torsin	PF06309.11	gi|336254369|ref|YP_004597476.1|	-	0.074	13.1	0.0	6.4	6.9	0.0	2.4	2	0	0	2	2	2	0	Torsin
Zot	PF05707.12	gi|336254369|ref|YP_004597476.1|	-	0.075	12.7	0.0	6.5	6.4	0.0	2.9	2	1	1	3	3	3	0	Zonular	occludens	toxin	(Zot)
Hydin_ADK	PF17213.3	gi|336254369|ref|YP_004597476.1|	-	0.082	13.2	0.0	4.7	7.4	0.0	2.5	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
Rad17	PF03215.15	gi|336254369|ref|YP_004597476.1|	-	0.084	12.8	0.0	6.7	6.6	0.0	2.2	2	0	0	2	2	2	0	Rad17	P-loop	domain
ResIII	PF04851.15	gi|336254369|ref|YP_004597476.1|	-	0.14	12.2	0.0	25	4.8	0.0	2.7	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
zf-C2H2_3	PF13878.6	gi|336254370|ref|YP_004597477.1|	-	0.029	14.2	3.7	0.051	13.4	3.7	1.5	1	1	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
GHMP_kinases_N	PF00288.26	gi|336254373|ref|YP_004597480.1|	-	2.1e-11	43.9	1.7	2.1e-11	43.9	1.7	1.9	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|336254373|ref|YP_004597480.1|	-	0.0014	18.9	0.0	0.0038	17.6	0.0	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
CM_2	PF01817.21	gi|336254374|ref|YP_004597481.1|	-	2.3e-16	59.9	4.5	2.8e-16	59.6	4.5	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
GPS2_interact	PF15784.5	gi|336254374|ref|YP_004597481.1|	-	0.02	15.3	0.9	0.035	14.5	0.9	1.4	1	0	0	1	1	1	0	G-protein	pathway	suppressor	2-interacting	domain
tRNA_synt_1c_R2	PF04557.15	gi|336254374|ref|YP_004597481.1|	-	0.044	14.7	0.3	0.075	14.0	0.3	1.3	1	0	0	1	1	1	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	2
HxlR	PF01638.17	gi|336254375|ref|YP_004597482.1|	-	2.7e-14	52.8	0.0	3.1e-14	52.6	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_20	PF12840.7	gi|336254375|ref|YP_004597482.1|	-	3.3e-06	27.0	0.1	5.1e-06	26.5	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|336254375|ref|YP_004597482.1|	-	4.7e-06	26.4	0.0	7.9e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336254375|ref|YP_004597482.1|	-	2.4e-05	24.1	0.0	3.5e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|336254375|ref|YP_004597482.1|	-	0.00011	22.0	0.1	0.00018	21.2	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254375|ref|YP_004597482.1|	-	0.00015	21.3	0.0	0.00022	20.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336254375|ref|YP_004597482.1|	-	0.06	13.2	0.0	0.085	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MAGSP	PF03082.14	gi|336254375|ref|YP_004597482.1|	-	0.061	12.9	0.0	0.077	12.6	0.0	1.1	1	0	0	1	1	1	0	Male	accessory	gland	secretory	protein
HTH_11	PF08279.12	gi|336254375|ref|YP_004597482.1|	-	0.096	12.7	0.1	0.15	12.0	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_DeoR	PF08220.12	gi|336254375|ref|YP_004597482.1|	-	0.12	12.2	0.1	0.19	11.5	0.1	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|336254375|ref|YP_004597482.1|	-	0.12	12.6	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|336254375|ref|YP_004597482.1|	-	0.16	11.9	0.0	0.25	11.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
F420_oxidored	PF03807.17	gi|336254376|ref|YP_004597483.1|	-	8.2e-17	61.6	0.1	1.8e-16	60.5	0.1	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
HTH_10	PF04967.12	gi|336254376|ref|YP_004597483.1|	-	2.3e-11	43.3	0.1	5.2e-11	42.2	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
NAD_binding_2	PF03446.15	gi|336254376|ref|YP_004597483.1|	-	0.00062	20.0	0.0	0.0013	18.9	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
HTH_5	PF01022.20	gi|336254376|ref|YP_004597483.1|	-	0.0011	18.8	0.1	0.016	15.0	0.1	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_3	PF01381.22	gi|336254376|ref|YP_004597483.1|	-	0.0053	16.8	0.1	0.11	12.6	0.1	2.4	1	1	0	1	1	1	1	Helix-turn-helix
IlvN	PF07991.12	gi|336254376|ref|YP_004597483.1|	-	0.0074	15.9	0.1	0.012	15.2	0.1	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
HTH_20	PF12840.7	gi|336254376|ref|YP_004597483.1|	-	0.011	15.8	0.1	0.039	14.0	0.1	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
3HCDH_N	PF02737.18	gi|336254376|ref|YP_004597483.1|	-	0.025	14.5	0.1	0.052	13.4	0.1	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|336254376|ref|YP_004597483.1|	-	0.036	14.1	0.0	0.063	13.3	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Sigma70_r3	PF04539.16	gi|336254376|ref|YP_004597483.1|	-	0.038	14.1	0.5	0.089	12.9	0.1	1.8	2	0	0	2	2	2	0	Sigma-70	region	3
Sigma70_r4	PF04545.16	gi|336254376|ref|YP_004597483.1|	-	0.046	13.3	0.1	0.11	12.1	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336254376|ref|YP_004597483.1|	-	0.073	13.0	0.1	0.7	9.8	0.1	2.5	1	1	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|336254376|ref|YP_004597483.1|	-	0.12	12.3	0.0	0.39	10.7	0.0	1.9	2	0	0	2	2	2	0	HTH	domain
HTH_24	PF13412.6	gi|336254376|ref|YP_004597483.1|	-	0.17	11.5	0.0	0.32	10.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Mga	PF05043.13	gi|336254376|ref|YP_004597483.1|	-	0.17	12.5	0.0	1.5	9.5	0.1	2.2	3	0	0	3	3	3	0	Mga	helix-turn-helix	domain
NAD_binding_7	PF13241.6	gi|336254376|ref|YP_004597483.1|	-	0.2	12.1	0.2	0.78	10.2	0.2	2.0	1	1	0	1	1	1	0	Putative	NAD(P)-binding
PIN	PF01850.21	gi|336254377|ref|YP_004597484.1|	-	1.3e-13	51.6	0.1	1.4e-13	51.4	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|336254378|ref|YP_004597485.1|	-	3e-20	72.8	3.9	4.1e-20	72.3	3.9	1.2	1	0	0	1	1	1	1	Putative	antitoxin
TraY	PF05509.11	gi|336254378|ref|YP_004597485.1|	-	0.099	12.7	1.0	11	6.1	0.2	2.3	2	0	0	2	2	2	0	TraY	domain
RHH_1	PF01402.21	gi|336254378|ref|YP_004597485.1|	-	4	7.5	10.4	0.27	11.2	0.5	2.9	3	1	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Trypsin_2	PF13365.6	gi|336254379|ref|YP_004597486.1|	-	6.8e-17	62.8	1.9	1.1e-16	62.0	1.9	1.4	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|336254379|ref|YP_004597486.1|	-	8.1e-06	25.8	0.4	0.0013	18.6	0.1	2.2	2	0	0	2	2	2	2	Trypsin
Peptidase_S46	PF10459.9	gi|336254379|ref|YP_004597486.1|	-	0.0048	15.6	0.5	0.28	9.8	0.2	2.3	2	1	1	3	3	3	2	Peptidase	S46
Peptidase_S29	PF02907.15	gi|336254379|ref|YP_004597486.1|	-	0.024	14.4	0.1	0.16	11.7	0.0	2.0	2	0	0	2	2	2	0	Hepatitis	C	virus	NS3	protease
Peptidase_S32	PF05579.13	gi|336254379|ref|YP_004597486.1|	-	0.024	13.8	4.5	1	8.5	0.3	2.2	2	0	0	2	2	2	0	Equine	arteritis	virus	serine	endopeptidase	S32
DUF1059	PF06348.11	gi|336254381|ref|YP_004597488.1|	-	0.0012	19.1	1.1	0.0016	18.6	1.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
MmoB_DmpM	PF02406.17	gi|336254381|ref|YP_004597488.1|	-	0.01	16.0	0.1	0.014	15.6	0.1	1.3	1	0	0	1	1	1	0	MmoB/DmpM	family
DUF5055	PF16478.5	gi|336254381|ref|YP_004597488.1|	-	0.054	13.7	0.1	0.068	13.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5055)
MarR_2	PF12802.7	gi|336254382|ref|YP_004597489.1|	-	2.3e-07	30.6	0.7	7.2e-07	29.0	0.4	2.0	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336254382|ref|YP_004597489.1|	-	1.2e-05	25.0	0.7	2.3e-05	24.1	0.1	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254382|ref|YP_004597489.1|	-	0.00011	22.0	0.0	0.00021	21.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|336254382|ref|YP_004597489.1|	-	0.00017	21.5	0.2	0.00031	20.6	0.2	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|336254382|ref|YP_004597489.1|	-	0.00018	21.6	0.2	0.002	18.2	0.1	2.2	2	0	0	2	2	2	1	DprA	winged	helix	domain
MarR	PF01047.22	gi|336254382|ref|YP_004597489.1|	-	0.00095	19.1	0.1	0.002	18.0	0.1	1.6	1	1	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336254382|ref|YP_004597489.1|	-	0.001	19.1	1.5	0.0044	17.0	0.4	2.5	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|336254382|ref|YP_004597489.1|	-	0.0034	17.8	0.0	0.007	16.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1724	PF08350.10	gi|336254382|ref|YP_004597489.1|	-	0.0038	17.3	0.0	0.0061	16.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_24	PF13412.6	gi|336254382|ref|YP_004597489.1|	-	0.021	14.4	0.1	0.021	14.4	0.1	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Trp_repressor	PF01371.19	gi|336254382|ref|YP_004597489.1|	-	0.035	14.2	0.2	0.065	13.4	0.2	1.3	1	0	0	1	1	1	0	Trp	repressor	protein
HTH_Tnp_ISL3	PF13542.6	gi|336254382|ref|YP_004597489.1|	-	0.059	12.8	0.4	0.15	11.5	0.4	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.6	gi|336254382|ref|YP_004597489.1|	-	0.13	12.1	1.2	0.39	10.6	1.2	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF4928	PF16280.5	gi|336254382|ref|YP_004597489.1|	-	0.16	11.2	0.0	0.28	10.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4928)
HTH_34	PF13601.6	gi|336254382|ref|YP_004597489.1|	-	0.19	11.9	0.0	0.32	11.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
UPF0561	PF10573.9	gi|336254384|ref|YP_004597491.1|	-	0.039	14.1	0.2	0.074	13.2	0.2	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0561
Usp	PF00582.26	gi|336254385|ref|YP_004597492.1|	-	1.7e-14	54.5	1.5	2e-14	54.3	1.5	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF4271	PF14093.6	gi|336254386|ref|YP_004597493.1|	-	0.0013	18.7	3.4	0.0015	18.5	3.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
Glucos_trans_II	PF14264.6	gi|336254386|ref|YP_004597493.1|	-	0.011	15.1	4.1	0.013	14.9	4.1	1.2	1	0	0	1	1	1	0	Glucosyl	transferase	GtrII
DUF5353	PF17304.2	gi|336254386|ref|YP_004597493.1|	-	0.083	12.6	0.1	0.17	11.6	0.1	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5353)
OppC_N	PF12911.7	gi|336254386|ref|YP_004597493.1|	-	0.21	11.6	1.6	0.3	11.1	0.2	1.9	1	1	1	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
YpmT	PF17431.2	gi|336254386|ref|YP_004597493.1|	-	2.1	8.4	4.6	5.3	7.2	0.1	2.3	2	1	0	2	2	2	0	Uncharacterized	YmpT-like
HTH_20	PF12840.7	gi|336254387|ref|YP_004597494.1|	-	1.1e-07	31.8	0.9	1.7e-07	31.2	0.9	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254387|ref|YP_004597494.1|	-	0.00031	20.5	0.1	0.00043	20.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
FUR	PF01475.19	gi|336254387|ref|YP_004597494.1|	-	0.001	19.2	0.0	0.0012	18.9	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_IclR	PF09339.10	gi|336254387|ref|YP_004597494.1|	-	0.0033	17.2	0.1	0.0053	16.5	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254387|ref|YP_004597494.1|	-	0.0094	15.5	0.0	0.017	14.7	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|336254387|ref|YP_004597494.1|	-	0.011	15.6	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|336254387|ref|YP_004597494.1|	-	0.025	14.5	0.0	0.042	13.8	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
PadR	PF03551.14	gi|336254387|ref|YP_004597494.1|	-	0.03	14.3	0.0	0.043	13.8	0.0	1.4	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.20	gi|336254387|ref|YP_004597494.1|	-	0.049	13.5	0.0	0.077	12.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|336254387|ref|YP_004597494.1|	-	0.053	13.4	0.0	0.091	12.6	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
YdjM	PF04307.14	gi|336254388|ref|YP_004597495.1|	-	2.5e-11	43.2	1.6	3.5e-11	42.7	1.6	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF2334	PF10096.9	gi|336254389|ref|YP_004597496.1|	-	0.0057	16.3	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Prenyltrans	PF00432.21	gi|336254389|ref|YP_004597496.1|	-	0.016	14.9	1.2	0.056	13.2	0.1	2.2	2	0	0	2	2	2	0	Prenyltransferase	and	squalene	oxidase	repeat
DUF2254	PF10011.9	gi|336254391|ref|YP_004597498.1|	-	3.1	6.5	5.6	0.8	8.5	2.5	1.5	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2254)
DUF354	PF04007.12	gi|336254392|ref|YP_004597499.1|	-	8.9e-08	31.6	0.0	3.3e-07	29.7	0.0	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Glyco_transf_4	PF13439.6	gi|336254392|ref|YP_004597499.1|	-	1.3e-05	25.3	0.4	2.3e-05	24.5	0.4	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336254392|ref|YP_004597499.1|	-	0.0042	17.5	0.8	0.0042	17.5	0.8	2.3	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_28	PF03033.20	gi|336254392|ref|YP_004597499.1|	-	0.095	12.7	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
Paralemmin	PF03285.15	gi|336254392|ref|YP_004597499.1|	-	0.2	11.2	0.0	0.28	10.7	0.0	1.1	1	0	0	1	1	1	0	Paralemmin
Glyco_hydro_76	PF03663.14	gi|336254393|ref|YP_004597500.1|	-	1.5e-07	31.3	0.0	4.9e-05	23.0	0.0	2.3	2	0	0	2	2	2	2	Glycosyl	hydrolase	family	76
Pec_lyase	PF09492.10	gi|336254393|ref|YP_004597500.1|	-	0.00028	20.3	0.1	0.0069	15.8	0.0	2.3	1	1	1	2	2	2	1	Pectic	acid	lyase
Glyco_hydro_88	PF07470.13	gi|336254393|ref|YP_004597500.1|	-	0.00061	19.0	0.4	0.0015	17.7	0.4	1.8	1	1	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
LANC_like	PF05147.13	gi|336254393|ref|YP_004597500.1|	-	0.022	13.4	0.1	4.7	5.7	0.0	2.8	2	1	0	2	2	2	0	Lanthionine	synthetase	C-like	protein
Glycos_transf_1	PF00534.20	gi|336254394|ref|YP_004597501.1|	-	2.5e-31	108.5	0.0	3.5e-31	108.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336254394|ref|YP_004597501.1|	-	3.6e-26	92.2	0.0	5.8e-26	91.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336254394|ref|YP_004597501.1|	-	1.3e-07	31.8	0.1	3.7e-07	30.3	0.1	1.8	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336254394|ref|YP_004597501.1|	-	4.9e-07	30.3	1.4	4.9e-07	30.3	1.4	2.3	2	1	0	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336254394|ref|YP_004597501.1|	-	2.1e-06	28.0	0.0	4.2e-06	27.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Acetyltransf_6	PF13480.7	gi|336254395|ref|YP_004597502.1|	-	5.4e-21	75.2	0.0	1.1e-20	74.3	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Beta_helix	PF13229.6	gi|336254396|ref|YP_004597503.1|	-	0.19	11.5	9.7	1.3	8.9	9.7	2.1	1	1	0	1	1	1	0	Right	handed	beta	helix	region
Polysacc_synt	PF01943.17	gi|336254397|ref|YP_004597504.1|	-	2.1e-28	99.5	12.8	2.1e-28	99.5	12.8	2.6	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|336254397|ref|YP_004597504.1|	-	4.5e-19	68.8	21.1	1.8e-15	56.9	0.1	3.1	2	1	1	3	3	3	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|336254397|ref|YP_004597504.1|	-	1.2e-18	67.6	17.8	1.2e-18	67.6	17.8	3.6	2	1	1	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
MatE	PF01554.18	gi|336254397|ref|YP_004597504.1|	-	1.1e-08	34.9	1.4	1.1e-08	34.9	1.4	4.0	3	1	1	4	4	4	1	MatE
MurJ	PF03023.14	gi|336254397|ref|YP_004597504.1|	-	0.027	13.1	28.4	0.034	12.7	7.0	3.6	2	1	1	3	3	3	0	Lipid	II	flippase	MurJ
DUF2206	PF09971.9	gi|336254398|ref|YP_004597505.1|	-	3.1	6.5	12.3	11	4.6	12.3	1.9	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2206)
DUF1616	PF07760.11	gi|336254399|ref|YP_004597506.1|	-	1.6e-83	280.5	4.2	1.9e-83	280.3	4.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
SQAPI	PF16845.5	gi|336254399|ref|YP_004597506.1|	-	0.0011	19.2	0.1	0.0027	18.0	0.1	1.6	1	0	0	1	1	1	1	Aspartic	acid	proteinase	inhibitor
Acetyltransf_6	PF13480.7	gi|336254400|ref|YP_004597507.1|	-	1.2e-20	74.1	0.0	3.1e-20	72.8	0.0	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FemAB	PF02388.16	gi|336254400|ref|YP_004597507.1|	-	0.0013	17.8	0.0	1.1	8.1	0.0	2.2	2	0	0	2	2	2	2	FemAB	family
RDD	PF06271.12	gi|336254401|ref|YP_004597508.1|	-	1e-23	84.1	1.6	1.1e-23	84.0	1.6	1.0	1	0	0	1	1	1	1	RDD	family
Pex2_Pex12	PF04757.14	gi|336254401|ref|YP_004597508.1|	-	0.25	10.9	0.0	0.4	10.2	0.0	1.4	1	0	0	1	1	1	0	Pex2	/	Pex12	amino	terminal	region
DUF2628	PF10947.8	gi|336254401|ref|YP_004597508.1|	-	2.4	8.6	5.0	0.54	10.6	1.9	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
Phosphodiest	PF01663.22	gi|336254402|ref|YP_004597509.1|	-	3.8e-37	128.7	0.0	3.4e-35	122.3	0.0	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Zip	PF02535.22	gi|336254403|ref|YP_004597510.1|	-	1.9e-13	50.3	20.1	2.4e-12	46.7	8.6	3.2	1	1	0	2	2	2	2	ZIP	Zinc	transporter
Phage_int_SAM_1	PF02899.17	gi|336254404|ref|YP_004597511.1|	-	2e-05	24.8	0.1	7.5e-05	23.0	0.1	2.0	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|336254404|ref|YP_004597511.1|	-	0.011	16.1	0.0	0.068	13.6	0.0	2.0	1	1	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DUF5333	PF17267.2	gi|336254404|ref|YP_004597511.1|	-	0.084	13.1	0.0	0.19	11.9	0.0	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5333)
Phage_int_SAM_5	PF13102.6	gi|336254404|ref|YP_004597511.1|	-	0.099	13.0	0.0	0.34	11.3	0.0	1.8	1	1	0	1	1	1	0	Phage	integrase	SAM-like	domain
Proton_antipo_M	PF00361.20	gi|336254405|ref|YP_004597512.1|	-	8.3e-33	113.8	14.6	8.3e-33	113.8	14.6	2.2	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|336254406|ref|YP_004597513.1|	-	2.1e-52	178.2	18.5	9.8e-52	176.0	18.5	2.0	1	1	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|336254406|ref|YP_004597513.1|	-	1e-05	25.5	0.2	3.1e-05	23.9	0.2	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_M	PF00361.20	gi|336254407|ref|YP_004597514.1|	-	4.7e-58	196.7	15.2	4.7e-58	196.7	15.2	1.9	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
NADHdeh_related	PF10125.9	gi|336254407|ref|YP_004597514.1|	-	3.9e-05	23.1	5.8	3.9e-05	23.1	5.8	3.1	3	1	0	3	3	3	2	NADH	dehydrogenase	I,	subunit	N	related	protein
Oxidored_q2	PF00420.24	gi|336254408|ref|YP_004597515.1|	-	1.3e-28	98.6	4.8	1.7e-28	98.3	4.8	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Phage_holin_3_6	PF07332.11	gi|336254408|ref|YP_004597515.1|	-	0.0099	15.9	2.6	0.0099	15.9	2.6	2.0	1	1	1	2	2	2	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
UNC-50	PF05216.13	gi|336254408|ref|YP_004597515.1|	-	0.38	10.3	5.1	0.49	9.9	5.1	1.2	1	0	0	1	1	1	0	UNC-50	family
Saf_2TM	PF18303.1	gi|336254408|ref|YP_004597515.1|	-	4	7.0	6.5	3.6	7.2	3.5	2.1	1	1	1	2	2	2	0	SAVED-fused	2TM	effector	domain
MnhB	PF04039.13	gi|336254409|ref|YP_004597516.1|	-	7.8e-21	74.7	14.3	1e-20	74.3	14.3	1.1	1	0	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF998	PF06197.13	gi|336254409|ref|YP_004597516.1|	-	1	9.0	12.7	6.2	6.4	12.7	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
DUF4040	PF13244.6	gi|336254410|ref|YP_004597517.1|	-	1e-18	67.2	14.3	1e-18	67.2	14.3	2.8	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4040)
Virul_fac_BrkB	PF03631.15	gi|336254410|ref|YP_004597517.1|	-	1.4	8.5	14.1	0.35	10.4	9.2	2.1	1	1	1	2	2	2	0	Virulence	factor	BrkB
PhaG_MnhG_YufB	PF03334.14	gi|336254411|ref|YP_004597518.1|	-	2.4e-24	85.4	9.7	3e-24	85.0	9.7	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
Amastin	PF07344.11	gi|336254411|ref|YP_004597518.1|	-	0.065	13.1	0.9	0.085	12.7	0.7	1.3	1	1	0	1	1	1	0	Amastin	surface	glycoprotein
SAYSvFN	PF10260.9	gi|336254411|ref|YP_004597518.1|	-	3.2	7.7	5.5	18	5.3	0.7	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	domain	(SAYSvFN)
MrpF_PhaF	PF04066.13	gi|336254412|ref|YP_004597519.1|	-	1.8e-18	66.6	5.5	1.8e-18	66.6	5.5	2.0	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
MNHE	PF01899.16	gi|336254413|ref|YP_004597520.1|	-	7.2e-34	116.6	2.5	1.1e-33	116.1	2.5	1.3	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
CbtB	PF09489.10	gi|336254414|ref|YP_004597521.1|	-	2.3e-16	59.6	4.0	2.6e-16	59.4	4.0	1.1	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtB)
CbtA	PF09490.10	gi|336254415|ref|YP_004597522.1|	-	1.2e-48	166.1	29.6	1.3e-48	165.9	29.6	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
DUF4064	PF13273.6	gi|336254415|ref|YP_004597522.1|	-	0.017	15.3	0.2	0.017	15.3	0.2	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4064)
Thiolase_N	PF00108.23	gi|336254416|ref|YP_004597523.1|	-	1.9e-76	256.9	0.0	3.1e-76	256.2	0.0	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|336254416|ref|YP_004597523.1|	-	1.9e-27	95.3	0.0	3.3e-27	94.6	0.0	1.4	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|336254416|ref|YP_004597523.1|	-	5.1e-05	23.0	0.3	0.00053	19.6	0.1	2.4	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III_C	PF08541.10	gi|336254416|ref|YP_004597523.1|	-	0.082	13.1	0.1	1	9.6	0.0	2.3	2	1	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF4689	PF15755.5	gi|336254417|ref|YP_004597524.1|	-	0.089	12.4	0.3	0.14	11.7	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4689)
DHO_dh	PF01180.21	gi|336254418|ref|YP_004597525.1|	-	9.5e-86	287.6	0.0	1.1e-85	287.4	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|336254418|ref|YP_004597525.1|	-	0.018	14.4	0.0	0.03	13.7	0.0	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
AP_endonuc_2	PF01261.24	gi|336254418|ref|YP_004597525.1|	-	0.027	13.9	0.0	0.062	12.7	0.0	1.7	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
zf-AN1	PF01428.16	gi|336254419|ref|YP_004597526.1|	-	2.2e-12	46.9	5.3	2.6e-12	46.7	5.3	1.1	1	0	0	1	1	1	1	AN1-like	Zinc	finger
Transp_Tc5_C	PF04236.15	gi|336254419|ref|YP_004597526.1|	-	0.072	13.5	1.8	0.091	13.1	1.8	1.2	1	0	0	1	1	1	0	Tc5	transposase	C-terminal	domain
Amidohydro_1	PF01979.20	gi|336254420|ref|YP_004597527.1|	-	4e-22	79.0	0.0	5.6e-22	78.5	0.0	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|336254420|ref|YP_004597527.1|	-	7.4e-19	68.6	0.8	6.5e-09	35.8	0.0	3.2	3	1	0	3	3	3	2	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|336254420|ref|YP_004597527.1|	-	0.024	15.0	0.3	0.4	11.0	0.2	2.4	2	0	0	2	2	2	0	Urease	alpha-subunit,	N-terminal	domain
Epimerase	PF01370.21	gi|336254421|ref|YP_004597528.1|	-	2.4e-57	194.2	0.0	2.9e-57	193.9	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336254421|ref|YP_004597528.1|	-	4.9e-54	184.0	0.0	1.3e-53	182.6	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|336254421|ref|YP_004597528.1|	-	3.5e-19	69.1	0.0	4.2e-18	65.5	0.0	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|336254421|ref|YP_004597528.1|	-	4.8e-19	68.4	0.0	1.2e-18	67.1	0.0	1.6	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|336254421|ref|YP_004597528.1|	-	8.4e-13	48.1	0.0	1e-12	47.7	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|336254421|ref|YP_004597528.1|	-	6.5e-09	35.3	0.3	1.7e-05	24.2	0.0	2.5	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|336254421|ref|YP_004597528.1|	-	1e-06	28.8	0.8	2.6e-06	27.5	0.0	1.9	2	0	0	2	2	2	1	NAD(P)H-binding
NmrA	PF05368.13	gi|336254421|ref|YP_004597528.1|	-	0.002	17.7	0.0	0.004	16.7	0.0	1.5	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|336254421|ref|YP_004597528.1|	-	0.017	15.0	0.4	0.41	10.5	0.4	2.4	1	1	0	1	1	1	0	KR	domain
TrkA_N	PF02254.18	gi|336254421|ref|YP_004597528.1|	-	0.025	14.8	0.0	0.1	12.9	0.0	2.0	1	1	1	2	2	2	0	TrkA-N	domain
HTH_IclR	PF09339.10	gi|336254423|ref|YP_004597530.1|	-	7.4e-05	22.5	0.0	0.00014	21.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254423|ref|YP_004597530.1|	-	0.0006	19.3	0.1	0.00095	18.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336254423|ref|YP_004597530.1|	-	0.0074	16.2	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|336254423|ref|YP_004597530.1|	-	0.0092	15.9	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|336254423|ref|YP_004597530.1|	-	0.063	13.3	0.1	0.12	12.4	0.1	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
BRCT_2	PF16589.5	gi|336254423|ref|YP_004597530.1|	-	0.097	13.1	0.0	0.14	12.6	0.0	1.3	1	0	0	1	1	1	0	BRCT	domain,	a	BRCA1	C-terminus	domain
TrmB	PF01978.19	gi|336254423|ref|YP_004597530.1|	-	0.17	11.8	0.1	0.44	10.5	0.0	1.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Big_3_5	PF16640.5	gi|336254424|ref|YP_004597531.1|	-	0.001	19.2	1.2	0.001	19.2	1.2	5.0	4	1	1	5	5	5	1	Bacterial	Ig-like	domain	(group	3)
Fn3-like	PF14310.6	gi|336254424|ref|YP_004597531.1|	-	0.006	16.7	0.1	0.11	12.6	0.0	2.7	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
Transglut_C	PF00927.22	gi|336254424|ref|YP_004597531.1|	-	0.064	13.4	0.0	0.19	11.9	0.0	1.8	1	0	0	1	1	1	0	Transglutaminase	family,	C-terminal	ig	like	domain
Glutenin_hmw	PF03157.13	gi|336254424|ref|YP_004597531.1|	-	0.076	11.4	63.2	0.0064	15.0	45.2	2.4	2	0	0	2	2	2	0	High	molecular	weight	glutenin	subunit
HTH_20	PF12840.7	gi|336254425|ref|YP_004597532.1|	-	0.038	14.0	0.0	0.19	11.8	0.0	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
zf-DNL	PF05180.12	gi|336254426|ref|YP_004597533.1|	-	0.0033	17.3	0.4	0.0037	17.2	0.4	1.1	1	0	0	1	1	1	1	DNL	zinc	finger
DUF3268	PF11672.8	gi|336254426|ref|YP_004597533.1|	-	0.0088	16.4	0.4	0.01	16.1	0.4	1.0	1	0	0	1	1	1	1	zinc-finger-containing	domain
HypA	PF01155.19	gi|336254426|ref|YP_004597533.1|	-	0.013	15.5	0.4	0.015	15.3	0.4	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|336254426|ref|YP_004597533.1|	-	0.018	15.2	1.0	0.03	14.4	1.0	1.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF35_N	PF12172.8	gi|336254426|ref|YP_004597533.1|	-	0.27	11.2	0.8	0.27	11.2	0.8	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-LITAF-like	PF10601.9	gi|336254426|ref|YP_004597533.1|	-	0.3	11.4	3.3	3.6	7.9	0.1	2.1	1	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
HTH_20	PF12840.7	gi|336254428|ref|YP_004597535.1|	-	2.8e-06	27.3	0.1	5e-06	26.5	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254428|ref|YP_004597535.1|	-	0.0015	18.0	0.1	0.0027	17.2	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|336254428|ref|YP_004597535.1|	-	0.0026	17.6	0.1	0.0039	17.0	0.1	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|336254428|ref|YP_004597535.1|	-	0.0032	17.4	0.1	0.0058	16.5	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|336254428|ref|YP_004597535.1|	-	0.0036	17.2	0.0	0.0069	16.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|336254428|ref|YP_004597535.1|	-	0.0079	16.7	0.1	0.013	16.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|336254428|ref|YP_004597535.1|	-	0.019	14.8	0.0	0.03	14.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|336254428|ref|YP_004597535.1|	-	0.025	14.4	0.0	0.04	13.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|336254428|ref|YP_004597535.1|	-	0.036	13.9	0.0	0.066	13.1	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
PadR	PF03551.14	gi|336254429|ref|YP_004597536.1|	-	3.2e-14	52.6	0.3	3.7e-14	52.4	0.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336254429|ref|YP_004597536.1|	-	0.0042	17.0	0.1	0.0058	16.6	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|336254429|ref|YP_004597536.1|	-	0.012	16.0	0.0	0.015	15.7	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4358	PF14270.6	gi|336254429|ref|YP_004597536.1|	-	0.03	14.6	0.0	0.054	13.8	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
B-block_TFIIIC	PF04182.12	gi|336254429|ref|YP_004597536.1|	-	0.069	13.3	0.0	0.088	13.0	0.0	1.1	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_34	PF13601.6	gi|336254429|ref|YP_004597536.1|	-	0.074	13.2	0.0	0.086	13.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|336254429|ref|YP_004597536.1|	-	0.083	12.7	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|336254429|ref|YP_004597536.1|	-	0.096	12.4	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF1616	PF07760.11	gi|336254430|ref|YP_004597537.1|	-	5.4e-85	285.3	1.3	6.2e-85	285.1	1.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4981	PF16353.5	gi|336254430|ref|YP_004597537.1|	-	0.073	13.6	0.9	1.1	9.7	0.1	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function(DUF4981)
DUF3040	PF11239.8	gi|336254431|ref|YP_004597538.1|	-	0.013	15.8	1.9	0.018	15.3	0.8	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
SLATT_1	PF18181.1	gi|336254431|ref|YP_004597538.1|	-	0.25	11.3	2.7	0.16	11.9	0.9	1.6	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
Hexapep	PF00132.24	gi|336254432|ref|YP_004597539.1|	-	4.6e-28	95.9	14.7	2.6e-09	36.4	0.2	5.2	5	0	0	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336254432|ref|YP_004597539.1|	-	8e-18	63.9	12.7	1.8e-07	30.8	0.5	4.8	4	1	1	5	5	5	5	Hexapeptide	repeat	of	succinyl-transferase
DegT_DnrJ_EryC1	PF01041.17	gi|336254433|ref|YP_004597540.1|	-	1.7e-127	425.7	0.0	1.9e-127	425.5	0.0	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|336254433|ref|YP_004597540.1|	-	1.7e-08	34.1	0.0	2.5e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|336254433|ref|YP_004597540.1|	-	6e-05	22.5	0.0	0.00015	21.1	0.0	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|336254433|ref|YP_004597540.1|	-	0.00032	19.8	0.0	0.00049	19.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|336254433|ref|YP_004597540.1|	-	0.015	13.9	0.0	0.024	13.2	0.0	1.3	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
GFO_IDH_MocA	PF01408.22	gi|336254434|ref|YP_004597541.1|	-	1.2e-26	93.9	0.2	2.3e-26	93.0	0.2	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.19	gi|336254434|ref|YP_004597541.1|	-	4e-07	29.6	0.0	8.1e-07	28.6	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336254434|ref|YP_004597541.1|	-	2.9e-06	27.7	0.0	7.2e-06	26.5	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|336254434|ref|YP_004597541.1|	-	4.9e-05	23.6	0.4	0.0005	20.3	0.1	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|336254434|ref|YP_004597541.1|	-	7e-05	22.5	0.0	0.00015	21.4	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Semialdhyde_dh	PF01118.24	gi|336254434|ref|YP_004597541.1|	-	0.001	19.5	0.1	0.0022	18.4	0.1	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|336254434|ref|YP_004597541.1|	-	0.01	16.0	0.4	0.01	16.0	0.4	1.7	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
DUF5340	PF17275.2	gi|336254434|ref|YP_004597541.1|	-	0.033	14.3	0.3	0.26	11.4	0.1	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5340)
Sacchrp_dh_NADP	PF03435.18	gi|336254434|ref|YP_004597541.1|	-	0.056	13.7	1.3	0.26	11.5	1.3	2.2	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336254435|ref|YP_004597542.1|	-	3.9e-41	140.7	0.1	6.5e-41	140.0	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh_C	PF03720.15	gi|336254435|ref|YP_004597542.1|	-	4e-20	72.2	0.1	1.8e-19	70.1	0.0	2.1	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|336254435|ref|YP_004597542.1|	-	3.1e-18	65.8	0.0	5.9e-18	64.9	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
NAD_binding_2	PF03446.15	gi|336254435|ref|YP_004597542.1|	-	8.4e-07	29.3	0.1	2.7e-06	27.6	0.1	1.9	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.18	gi|336254435|ref|YP_004597542.1|	-	0.00059	20.1	0.7	0.0038	17.5	0.7	2.5	1	0	0	1	1	1	1	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336254435|ref|YP_004597542.1|	-	0.00067	19.7	0.1	0.0034	17.4	0.0	2.1	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.18	gi|336254435|ref|YP_004597542.1|	-	0.011	15.6	0.2	0.02	14.8	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Glycos_transf_2	PF00535.26	gi|336254436|ref|YP_004597543.1|	-	4.1e-19	69.0	0.0	7.2e-19	68.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336254436|ref|YP_004597543.1|	-	6.3e-05	23.0	0.2	0.0002	21.3	0.2	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
zf-ribbon_3	PF13248.6	gi|336254437|ref|YP_004597544.1|	-	6.1e-06	25.4	4.4	1e-05	24.8	4.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336254437|ref|YP_004597544.1|	-	3.2e-05	23.5	3.6	4.5e-05	23.0	3.6	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336254437|ref|YP_004597544.1|	-	5.8e-05	23.0	0.7	6.6e-05	22.9	0.7	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|336254437|ref|YP_004597544.1|	-	0.00024	21.8	0.2	0.00025	21.8	0.2	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
HypA	PF01155.19	gi|336254437|ref|YP_004597544.1|	-	0.00058	19.9	0.6	0.00073	19.5	0.6	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|336254437|ref|YP_004597544.1|	-	0.0037	17.1	0.4	2.7	7.9	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
Zn-ribbon_8	PF09723.10	gi|336254437|ref|YP_004597544.1|	-	0.019	15.1	4.7	0.062	13.4	4.7	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|336254437|ref|YP_004597544.1|	-	0.029	14.5	1.7	0.048	13.7	1.7	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
TackOD1	PF18551.1	gi|336254437|ref|YP_004597544.1|	-	0.043	13.5	0.2	0.053	13.2	0.2	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
TF_Zn_Ribbon	PF08271.12	gi|336254437|ref|YP_004597544.1|	-	0.046	13.2	2.7	0.81	9.2	0.1	2.3	1	1	1	2	2	2	0	TFIIB	zinc-binding
RNA_POL_M_15KD	PF02150.16	gi|336254437|ref|YP_004597544.1|	-	0.072	13.0	1.6	0.33	10.8	0.1	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
NRDD	PF13597.6	gi|336254437|ref|YP_004597544.1|	-	0.076	11.8	1.1	0.092	11.5	1.1	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
OrfB_Zn_ribbon	PF07282.11	gi|336254437|ref|YP_004597544.1|	-	0.097	12.6	4.2	0.28	11.1	4.0	1.7	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|336254437|ref|YP_004597544.1|	-	0.099	12.6	2.0	0.92	9.5	0.0	2.2	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|336254437|ref|YP_004597544.1|	-	0.12	12.1	3.2	1.3	8.8	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Prim_Zn_Ribbon	PF08273.12	gi|336254437|ref|YP_004597544.1|	-	0.32	11.3	5.7	1.9	8.9	0.8	2.4	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF35_N	PF12172.8	gi|336254437|ref|YP_004597544.1|	-	0.42	10.5	5.0	2.2	8.2	5.0	1.9	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin_2	PF18073.1	gi|336254437|ref|YP_004597544.1|	-	2.3	8.0	6.1	10	5.9	6.1	1.9	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-ISL3	PF14690.6	gi|336254437|ref|YP_004597544.1|	-	2.8	8.7	5.1	8.8	7.1	0.3	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Glyco_trans_1_4	PF13692.6	gi|336254438|ref|YP_004597545.1|	-	4e-11	43.5	0.0	7.6e-11	42.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|336254438|ref|YP_004597545.1|	-	1.7e-10	40.7	0.0	2.8e-10	40.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336254438|ref|YP_004597545.1|	-	2.3e-08	34.2	0.0	5.8e-08	32.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336254438|ref|YP_004597545.1|	-	2.8e-08	34.4	0.3	7.5e-08	33.0	0.1	1.8	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|336254438|ref|YP_004597545.1|	-	0.00046	20.2	0.0	0.00098	19.2	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|336254438|ref|YP_004597545.1|	-	0.0038	17.6	0.0	0.0077	16.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF1129	PF06570.11	gi|336254440|ref|YP_004597547.1|	-	0.017	14.6	0.2	0.021	14.3	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
ADH_N	PF08240.12	gi|336254441|ref|YP_004597548.1|	-	1.1e-28	99.3	0.1	2.5e-28	98.1	0.1	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336254441|ref|YP_004597548.1|	-	7.2e-20	71.3	0.1	8.2e-15	54.9	0.0	2.3	2	0	0	2	2	2	2	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.6	gi|336254441|ref|YP_004597548.1|	-	9e-10	38.3	0.4	2e-09	37.2	0.4	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
AlaDh_PNT_C	PF01262.21	gi|336254441|ref|YP_004597548.1|	-	0.04	13.2	0.0	0.063	12.6	0.0	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Methyltransf_25	PF13649.6	gi|336254441|ref|YP_004597548.1|	-	0.059	14.1	0.1	0.16	12.7	0.1	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254441|ref|YP_004597548.1|	-	0.12	13.0	0.0	0.94	10.2	0.0	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
Epimerase	PF01370.21	gi|336254442|ref|YP_004597549.1|	-	1.2e-32	113.3	0.0	2e-32	112.6	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336254442|ref|YP_004597549.1|	-	3.7e-24	85.2	0.0	4.9e-24	84.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|336254442|ref|YP_004597549.1|	-	4.8e-22	78.8	0.0	9.3e-22	77.8	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|336254442|ref|YP_004597549.1|	-	2.6e-19	69.8	0.0	3.7e-19	69.3	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336254442|ref|YP_004597549.1|	-	3.2e-18	65.8	0.0	3.7e-11	42.7	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|336254442|ref|YP_004597549.1|	-	8.7e-11	41.4	0.0	1.3e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|336254442|ref|YP_004597549.1|	-	1.7e-08	34.3	0.0	3.3e-08	33.4	0.0	1.5	2	0	0	2	2	2	1	NmrA-like	family
Polysacc_synt_2	PF02719.15	gi|336254442|ref|YP_004597549.1|	-	4.1e-07	29.4	0.0	8.8e-07	28.3	0.0	1.5	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|336254442|ref|YP_004597549.1|	-	1.5e-05	24.6	0.0	0.00017	21.1	0.0	2.3	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336254442|ref|YP_004597549.1|	-	0.098	12.6	0.0	0.23	11.4	0.0	1.5	1	1	0	1	1	1	0	KR	domain
TrkA_N	PF02254.18	gi|336254442|ref|YP_004597549.1|	-	0.13	12.6	0.0	0.39	11.0	0.0	1.7	2	0	0	2	2	2	0	TrkA-N	domain
DUF362	PF04015.12	gi|336254443|ref|YP_004597550.1|	-	2e-06	28.2	0.0	3.3e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
GFO_IDH_MocA	PF01408.22	gi|336254444|ref|YP_004597551.1|	-	2.2e-23	83.4	0.4	4.3e-23	82.4	0.4	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336254444|ref|YP_004597551.1|	-	1.6e-08	34.6	0.0	5.6e-08	32.8	0.0	1.9	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Sacchrp_dh_NADP	PF03435.18	gi|336254444|ref|YP_004597551.1|	-	0.0018	18.5	0.1	0.0051	17.1	0.1	1.8	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336254444|ref|YP_004597551.1|	-	0.007	15.7	0.2	0.051	12.9	0.0	2.2	1	1	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
CoA_binding	PF02629.19	gi|336254444|ref|YP_004597551.1|	-	0.011	16.4	0.1	0.029	15.1	0.1	1.7	1	0	0	1	1	1	0	CoA	binding	domain
ADH_zinc_N	PF00107.26	gi|336254444|ref|YP_004597551.1|	-	0.024	14.6	0.6	0.056	13.4	0.5	1.7	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Gp_dh_N	PF00044.24	gi|336254444|ref|YP_004597551.1|	-	0.11	12.9	0.0	0.18	12.2	0.0	1.4	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|336254444|ref|YP_004597551.1|	-	0.12	12.8	0.1	0.21	12.0	0.1	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
CoA_binding_2	PF13380.6	gi|336254444|ref|YP_004597551.1|	-	0.14	12.7	0.5	0.29	11.6	0.5	1.5	1	0	0	1	1	1	0	CoA	binding	domain
NAD_binding_3	PF03447.16	gi|336254444|ref|YP_004597551.1|	-	0.16	12.6	1.4	0.32	11.7	1.4	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
Polysacc_deac_1	PF01522.21	gi|336254445|ref|YP_004597552.1|	-	2e-06	27.7	0.0	4e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Phosphodiest	PF01663.22	gi|336254446|ref|YP_004597553.1|	-	4.2e-48	164.7	0.6	2e-46	159.2	0.6	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
OppC_N	PF12911.7	gi|336254448|ref|YP_004597555.1|	-	0.11	12.5	0.0	0.11	12.5	0.0	4.5	5	0	0	5	5	5	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
CoA_transf_3	PF02515.17	gi|336254449|ref|YP_004597556.1|	-	1.5e-124	415.9	0.0	1.7e-124	415.7	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
Acetyltransf_9	PF13527.7	gi|336254450|ref|YP_004597557.1|	-	1e-20	74.1	0.0	3.1e-19	69.3	0.0	2.4	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336254450|ref|YP_004597557.1|	-	0.0059	16.8	0.0	0.32	11.3	0.0	2.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
SPDY	PF03771.16	gi|336254450|ref|YP_004597557.1|	-	0.27	11.2	3.1	0.19	11.7	0.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF317)
TAT_signal	PF10518.9	gi|336254451|ref|YP_004597558.1|	-	0.21	11.5	4.4	0.41	10.6	4.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.9	gi|336254452|ref|YP_004597559.1|	-	0.055	13.3	6.7	0.12	12.2	6.7	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MRP-S35	PF10246.9	gi|336254452|ref|YP_004597559.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Mitochondrial	ribosomal	protein	MRP-S35
DUF4957	PF16318.5	gi|336254452|ref|YP_004597559.1|	-	0.23	11.4	0.4	0.52	10.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4957)
TFIIB	PF00382.19	gi|336254453|ref|YP_004597560.1|	-	2.6e-36	123.5	0.1	9.1e-18	64.1	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336254453|ref|YP_004597560.1|	-	1.1e-16	60.0	3.4	2.2e-16	59.1	3.4	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_N	PF00134.23	gi|336254453|ref|YP_004597560.1|	-	0.0055	16.5	0.0	0.012	15.4	0.0	1.6	1	0	0	1	1	1	1	Cyclin,	N-terminal	domain
Ribosomal_S27e	PF01667.17	gi|336254453|ref|YP_004597560.1|	-	0.016	14.9	0.2	0.034	13.9	0.2	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
A2L_zn_ribbon	PF08792.10	gi|336254453|ref|YP_004597560.1|	-	0.065	13.0	0.6	0.21	11.3	0.6	1.9	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|336254453|ref|YP_004597560.1|	-	0.11	11.9	0.5	4.7	6.8	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
HIP1_clath_bdg	PF16515.5	gi|336254453|ref|YP_004597560.1|	-	0.16	12.6	0.7	41	4.9	0.1	2.9	3	0	0	3	3	3	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DZR	PF12773.7	gi|336254453|ref|YP_004597560.1|	-	0.18	11.8	1.0	0.59	10.2	1.0	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
GATA	PF00320.27	gi|336254453|ref|YP_004597560.1|	-	1.4	8.6	4.2	9	6.0	1.0	2.9	2	1	1	3	3	3	0	GATA	zinc	finger
HUN	PF08729.10	gi|336254454|ref|YP_004597561.1|	-	0.023	14.7	1.7	0.028	14.4	1.7	1.1	1	0	0	1	1	1	0	HPC2	and	ubinuclein	domain
TAT_signal	PF10518.9	gi|336254455|ref|YP_004597562.1|	-	0.067	13.1	1.1	0.14	12.1	1.1	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Colicin_E5	PF12106.8	gi|336254455|ref|YP_004597562.1|	-	0.11	12.8	0.1	0.17	12.2	0.1	1.2	1	0	0	1	1	1	0	Colicin	E5	ribonuclease	domain
ERCC3_RAD25_C	PF16203.5	gi|336254456|ref|YP_004597563.1|	-	2.1e-25	89.4	0.0	3.4e-25	88.7	0.0	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|336254456|ref|YP_004597563.1|	-	3.6e-13	49.9	0.0	8.3e-13	48.7	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|336254456|ref|YP_004597563.1|	-	2.7e-12	47.0	0.0	1.7e-11	44.5	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|336254456|ref|YP_004597563.1|	-	3.1e-12	45.9	0.0	3.9e-12	45.6	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
DEAD	PF00270.29	gi|336254456|ref|YP_004597563.1|	-	7.7e-07	29.0	0.0	7.5e-06	25.8	0.0	2.3	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_33	PF13671.6	gi|336254456|ref|YP_004597563.1|	-	0.0024	18.1	0.8	0.052	13.7	0.0	3.3	4	0	0	4	4	4	1	AAA	domain
MarR_2	PF12802.7	gi|336254456|ref|YP_004597563.1|	-	0.0029	17.5	1.1	0.0077	16.1	0.5	2.1	2	0	0	2	2	2	1	MarR	family
AAA_30	PF13604.6	gi|336254456|ref|YP_004597563.1|	-	0.0079	15.9	0.0	0.054	13.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|336254456|ref|YP_004597563.1|	-	0.012	15.2	0.4	0.17	11.4	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
AAA	PF00004.29	gi|336254456|ref|YP_004597563.1|	-	0.14	12.6	0.0	0.31	11.5	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4283	PF14111.6	gi|336254456|ref|YP_004597563.1|	-	0.17	11.4	0.0	0.3	10.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4283)
DUF87	PF01935.17	gi|336254458|ref|YP_004597565.1|	-	1.2e-10	41.9	0.0	1.2e-10	41.9	0.0	2.7	2	1	0	2	2	1	1	Helicase	HerA,	central	domain
SlyX	PF04102.12	gi|336254458|ref|YP_004597565.1|	-	1.4e-06	28.8	19.8	4.7e-06	27.1	6.3	2.9	2	0	0	2	2	2	1	SlyX
DUF853	PF05872.12	gi|336254458|ref|YP_004597565.1|	-	5.8e-06	25.2	0.1	0.00055	18.7	0.0	2.4	2	1	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
TMF_DNA_bd	PF12329.8	gi|336254458|ref|YP_004597565.1|	-	0.00078	19.4	4.7	0.00078	19.4	4.7	3.0	3	0	0	3	3	2	1	TATA	element	modulatory	factor	1	DNA	binding
FlaC_arch	PF05377.11	gi|336254458|ref|YP_004597565.1|	-	0.00088	19.6	12.4	0.049	14.0	0.5	3.0	3	0	0	3	3	2	2	Flagella	accessory	protein	C	(FlaC)
CbiA	PF01656.23	gi|336254458|ref|YP_004597565.1|	-	0.0015	18.6	0.0	0.0029	17.7	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
APS_kinase	PF01583.20	gi|336254458|ref|YP_004597565.1|	-	0.0032	17.4	0.1	0.011	15.7	0.0	1.9	2	0	0	2	2	1	1	Adenylylsulphate	kinase
Fib_alpha	PF08702.10	gi|336254458|ref|YP_004597565.1|	-	0.0067	16.6	5.2	0.014	15.6	4.4	1.9	1	1	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
AAA_16	PF13191.6	gi|336254458|ref|YP_004597565.1|	-	0.0077	16.6	0.0	0.0077	16.6	0.0	2.9	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336254458|ref|YP_004597565.1|	-	0.013	16.0	0.0	0.082	13.3	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_13	PF13166.6	gi|336254458|ref|YP_004597565.1|	-	0.014	14.0	7.8	0.028	13.1	7.8	1.4	1	0	0	1	1	1	0	AAA	domain
Wtap	PF17098.5	gi|336254458|ref|YP_004597565.1|	-	0.016	15.1	15.5	0.051	13.5	14.9	2.0	1	1	0	1	1	1	0	WTAP/Mum2p	family
DUF4795	PF16043.5	gi|336254458|ref|YP_004597565.1|	-	0.022	14.4	6.4	0.67	9.5	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
Med9	PF07544.13	gi|336254458|ref|YP_004597565.1|	-	0.039	14.0	11.8	0.37	10.9	0.9	3.0	3	0	0	3	3	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
KxDL	PF10241.9	gi|336254458|ref|YP_004597565.1|	-	0.043	14.1	6.0	2.7	8.3	0.6	2.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
AAA_10	PF12846.7	gi|336254458|ref|YP_004597565.1|	-	0.048	12.6	2.1	0.45	9.4	0.0	2.8	2	1	1	3	3	3	0	AAA-like	domain
AAA_31	PF13614.6	gi|336254458|ref|YP_004597565.1|	-	0.072	13.0	0.4	0.17	11.8	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
ATPase_2	PF01637.18	gi|336254458|ref|YP_004597565.1|	-	0.073	13.0	0.6	12	5.8	0.0	2.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
Phage_GP20	PF06810.11	gi|336254458|ref|YP_004597565.1|	-	0.14	11.9	13.3	0.067	13.0	2.5	3.0	3	0	0	3	3	3	0	Phage	minor	structural	protein	GP20
CLP1_P	PF16575.5	gi|336254458|ref|YP_004597565.1|	-	0.19	11.5	0.0	1	9.1	0.0	2.2	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
BRE1	PF08647.11	gi|336254458|ref|YP_004597565.1|	-	0.23	11.6	11.4	1.4	9.0	0.5	2.7	2	0	0	2	2	2	0	BRE1	E3	ubiquitin	ligase
AAA_18	PF13238.6	gi|336254458|ref|YP_004597565.1|	-	0.25	11.9	0.0	0.25	11.9	0.0	2.7	2	1	0	2	2	1	0	AAA	domain
DUF4407	PF14362.6	gi|336254458|ref|YP_004597565.1|	-	0.29	10.4	18.1	0.013	14.9	12.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
AAA_22	PF13401.6	gi|336254458|ref|YP_004597565.1|	-	0.3	11.4	1.5	0.45	10.8	0.0	2.0	3	0	0	3	3	1	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|336254458|ref|YP_004597565.1|	-	0.32	10.1	0.0	0.32	10.1	0.0	2.0	2	1	0	2	2	2	0	Anion-transporting	ATPase
DUF16	PF01519.16	gi|336254458|ref|YP_004597565.1|	-	0.39	11.2	10.9	0.99	9.9	0.8	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
Baculo_PEP_C	PF04513.12	gi|336254458|ref|YP_004597565.1|	-	0.52	10.3	2.2	7.4	6.6	0.1	2.5	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ABC_tran_CTD	PF16326.5	gi|336254458|ref|YP_004597565.1|	-	0.55	10.5	30.7	0.96	9.7	8.5	3.2	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
TMPIT	PF07851.13	gi|336254458|ref|YP_004597565.1|	-	0.87	8.8	3.1	16	4.7	0.1	2.1	2	0	0	2	2	2	0	TMPIT-like	protein
DUF1664	PF07889.12	gi|336254458|ref|YP_004597565.1|	-	0.99	9.4	11.6	3.5	7.7	2.1	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF2570	PF10828.8	gi|336254458|ref|YP_004597565.1|	-	1	9.2	4.3	0.34	10.8	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2570)
Ead_Ea22	PF13935.6	gi|336254458|ref|YP_004597565.1|	-	1.1	10.0	20.4	77	3.9	15.1	3.2	2	1	0	2	2	2	0	Ead/Ea22-like	protein
SHE3	PF17078.5	gi|336254458|ref|YP_004597565.1|	-	1.1	9.0	18.3	0.17	11.6	5.4	2.4	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
Prefoldin_2	PF01920.20	gi|336254458|ref|YP_004597565.1|	-	1.4	8.9	22.7	1.9	8.5	8.7	3.2	2	1	1	3	3	3	0	Prefoldin	subunit
CENP-F_leu_zip	PF10473.9	gi|336254458|ref|YP_004597565.1|	-	1.6	8.7	27.3	60	3.6	27.3	2.5	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4094	PF13334.6	gi|336254458|ref|YP_004597565.1|	-	1.8	9.1	3.4	27	5.3	0.2	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4094)
MscS_porin	PF12795.7	gi|336254458|ref|YP_004597565.1|	-	1.9	8.0	25.9	0.03	13.9	18.2	1.7	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
TSNAXIP1_N	PF15739.5	gi|336254458|ref|YP_004597565.1|	-	2	8.9	9.8	3.4	8.1	1.0	3.6	3	0	0	3	3	3	0	Translin-associated	factor	X-interacting	N-terminus
ADIP	PF11559.8	gi|336254458|ref|YP_004597565.1|	-	3.1	7.9	20.6	4.2	7.4	6.9	2.7	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
COG2	PF06148.11	gi|336254458|ref|YP_004597565.1|	-	3.2	7.9	11.3	6.1	6.9	1.6	2.7	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
YabA	PF06156.13	gi|336254458|ref|YP_004597565.1|	-	3.2	8.4	10.7	0.14	12.8	0.4	2.7	3	0	0	3	3	2	0	Initiation	control	protein	YabA
DUF4446	PF14584.6	gi|336254458|ref|YP_004597565.1|	-	3.7	7.5	6.2	4.8	7.2	0.8	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
CorA	PF01544.18	gi|336254458|ref|YP_004597565.1|	-	5.4	6.2	11.7	7.8	5.7	4.7	2.4	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
V_ATPase_I	PF01496.19	gi|336254458|ref|YP_004597565.1|	-	6	4.7	10.9	9	4.1	1.1	2.0	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Prefoldin	PF02996.17	gi|336254458|ref|YP_004597565.1|	-	6.5	6.7	14.5	8.6	6.3	3.4	3.2	2	1	1	3	3	3	0	Prefoldin	subunit
PilO	PF04350.13	gi|336254458|ref|YP_004597565.1|	-	6.7	6.9	7.6	57	3.9	1.1	3.2	2	1	0	3	3	3	0	Pilus	assembly	protein,	PilO
Exonuc_VII_L	PF02601.15	gi|336254458|ref|YP_004597565.1|	-	6.8	6.2	9.7	0.31	10.6	4.0	1.6	2	0	0	2	2	1	0	Exonuclease	VII,	large	subunit
RasGAP_C	PF03836.15	gi|336254458|ref|YP_004597565.1|	-	7.2	6.8	9.3	1.3	9.2	1.8	2.4	2	0	0	2	2	2	0	RasGAP	C-terminus
KLRAQ	PF10205.9	gi|336254458|ref|YP_004597565.1|	-	7.3	6.9	9.9	14	6.0	1.9	2.6	2	0	0	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
HPP	PF04982.13	gi|336254459|ref|YP_004597566.1|	-	0.0017	18.6	0.4	0.0017	18.6	0.4	1.0	1	0	0	1	1	1	1	HPP	family
DegT_DnrJ_EryC1	PF01041.17	gi|336254460|ref|YP_004597567.1|	-	5.7e-15	55.5	0.0	4.5e-12	46.0	0.0	2.1	2	0	0	2	2	2	2	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|336254460|ref|YP_004597567.1|	-	0.00032	20.0	0.0	0.00058	19.1	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Phosphodiest	PF01663.22	gi|336254461|ref|YP_004597568.1|	-	2.6e-37	129.2	0.0	9.9e-36	124.1	0.0	2.0	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Acetyltransf_6	PF13480.7	gi|336254462|ref|YP_004597569.1|	-	3.1e-19	69.5	1.3	4.3e-19	69.1	0.1	1.9	3	0	0	3	3	3	1	Acetyltransferase	(GNAT)	domain
FemAB	PF02388.16	gi|336254462|ref|YP_004597569.1|	-	5.1e-06	25.6	0.0	0.00058	18.9	0.0	2.1	2	0	0	2	2	2	2	FemAB	family
bPH_2	PF03703.14	gi|336254463|ref|YP_004597570.1|	-	0.003	17.7	0.3	0.0059	16.8	0.3	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
MarR	PF01047.22	gi|336254464|ref|YP_004597571.1|	-	0.00025	20.9	0.0	0.00034	20.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336254464|ref|YP_004597571.1|	-	0.00049	19.9	0.1	0.00065	19.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336254464|ref|YP_004597571.1|	-	0.0022	17.5	0.0	0.0034	16.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|336254464|ref|YP_004597571.1|	-	0.0065	16.3	0.0	0.0079	16.0	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_Crp_2	PF13545.6	gi|336254464|ref|YP_004597571.1|	-	0.011	15.7	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254464|ref|YP_004597571.1|	-	0.013	15.6	0.0	0.02	15.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|336254464|ref|YP_004597571.1|	-	0.026	14.5	0.0	0.49	10.4	0.0	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336254464|ref|YP_004597571.1|	-	0.042	13.7	0.1	0.058	13.3	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|336254464|ref|YP_004597571.1|	-	0.09	12.9	0.0	0.17	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2582	PF10771.9	gi|336254464|ref|YP_004597571.1|	-	0.12	12.6	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	domain	(DUF2582)
RecA	PF00154.21	gi|336254464|ref|YP_004597571.1|	-	0.16	11.4	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
PGM_PMM_I	PF02878.16	gi|336254465|ref|YP_004597572.1|	-	2.3e-33	114.8	0.0	5.9e-33	113.5	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.16	gi|336254465|ref|YP_004597572.1|	-	8.3e-22	77.5	0.0	1.6e-21	76.7	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.16	gi|336254465|ref|YP_004597572.1|	-	2.9e-21	76.0	2.1	8.3e-21	74.6	0.2	2.5	3	0	0	3	3	3	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|336254465|ref|YP_004597572.1|	-	2.6e-14	53.1	1.1	1e-13	51.2	1.1	2.0	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Asp_protease_2	PF13650.6	gi|336254465|ref|YP_004597572.1|	-	0.089	13.4	0.0	0.26	12.0	0.0	1.8	1	0	0	1	1	1	0	Aspartyl	protease
CinA_KH	PF18146.1	gi|336254465|ref|YP_004597572.1|	-	0.093	12.9	0.3	0.31	11.2	0.3	1.9	1	0	0	1	1	1	0	Damage-inducible	protein	CinA	KH	domain
UPF0146	PF03686.13	gi|336254465|ref|YP_004597572.1|	-	1.4	8.8	5.6	32	4.4	0.0	3.7	3	1	1	4	4	4	0	Uncharacterised	protein	family	(UPF0146)
DUF1610	PF07754.11	gi|336254466|ref|YP_004597573.1|	-	0.0092	15.9	1.6	0.34	10.9	0.1	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
Zn-ribbon_8	PF09723.10	gi|336254466|ref|YP_004597573.1|	-	0.018	15.1	2.7	0.073	13.2	2.4	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
Vps36-NZF-N	PF16988.5	gi|336254466|ref|YP_004597573.1|	-	0.034	13.5	0.9	0.043	13.2	0.1	1.6	1	1	1	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
RecR	PF02132.15	gi|336254466|ref|YP_004597573.1|	-	0.038	13.5	1.1	0.3	10.7	0.0	2.1	2	0	0	2	2	2	0	RecR	protein
DUF3268	PF11672.8	gi|336254466|ref|YP_004597573.1|	-	0.05	13.9	0.2	0.063	13.6	0.2	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
FdhE	PF04216.12	gi|336254466|ref|YP_004597573.1|	-	0.054	13.4	0.2	0.059	13.2	0.2	1.0	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
zinc_ribbon_9	PF14369.6	gi|336254466|ref|YP_004597573.1|	-	0.075	13.3	1.3	5.8	7.3	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon
Zn_ribbon_SprT	PF17283.2	gi|336254466|ref|YP_004597573.1|	-	0.085	12.8	5.1	0.35	10.8	0.4	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|336254466|ref|YP_004597573.1|	-	0.093	12.8	2.6	0.19	11.8	2.6	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-LITAF-like	PF10601.9	gi|336254466|ref|YP_004597573.1|	-	0.11	12.8	3.6	0.7	10.2	0.2	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336254466|ref|YP_004597573.1|	-	0.12	12.1	2.6	1.4	8.8	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336254466|ref|YP_004597573.1|	-	0.14	11.7	2.7	0.57	9.7	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
NTP_transferase	PF00483.23	gi|336254467|ref|YP_004597574.1|	-	3.2e-37	128.4	0.0	8.3e-37	127.1	0.0	1.6	2	0	0	2	2	2	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336254467|ref|YP_004597574.1|	-	3.8e-16	59.9	0.4	5.5e-16	59.3	0.4	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|336254467|ref|YP_004597574.1|	-	2.2e-12	46.2	9.8	0.00037	20.1	0.4	4.6	5	1	1	6	6	6	3	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|336254467|ref|YP_004597574.1|	-	0.0017	18.2	0.0	0.0024	17.6	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|336254467|ref|YP_004597574.1|	-	0.0028	17.4	4.8	0.35	10.7	0.3	3.7	3	1	1	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Bactofilin	PF04519.13	gi|336254467|ref|YP_004597574.1|	-	0.04	14.2	1.5	0.085	13.2	1.5	1.5	1	0	0	1	1	1	0	Polymer-forming	cytoskeletal
Fucokinase	PF07959.12	gi|336254467|ref|YP_004597574.1|	-	0.041	12.8	0.0	0.1	11.5	0.0	1.5	1	1	1	2	2	2	0	L-fucokinase
DUF4954	PF16314.5	gi|336254467|ref|YP_004597574.1|	-	0.26	9.4	0.1	0.37	8.9	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
SIS	PF01380.22	gi|336254468|ref|YP_004597575.1|	-	3e-51	172.7	0.1	1.1e-24	86.8	0.6	2.6	3	0	0	3	3	3	2	SIS	domain
GATase_6	PF13522.6	gi|336254468|ref|YP_004597575.1|	-	4.8e-22	78.6	0.2	1.6e-21	76.9	0.1	1.9	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|336254468|ref|YP_004597575.1|	-	4e-18	65.5	0.0	8e-18	64.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.21	gi|336254468|ref|YP_004597575.1|	-	0.012	14.4	0.0	0.029	13.1	0.0	1.6	1	1	1	2	2	2	0	Glutamine	amidotransferases	class-II
GATase_4	PF13230.6	gi|336254468|ref|YP_004597575.1|	-	0.014	14.3	0.0	0.023	13.6	0.0	1.2	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
SIS_2	PF13580.6	gi|336254468|ref|YP_004597575.1|	-	0.028	14.4	0.1	2.6	8.0	0.0	2.4	2	0	0	2	2	2	0	SIS	domain
Na_H_Exchanger	PF00999.21	gi|336254469|ref|YP_004597576.1|	-	1.1e-45	156.1	50.8	1.5e-45	155.7	50.8	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Usp	PF00582.26	gi|336254469|ref|YP_004597576.1|	-	1.7e-13	51.3	2.5	1.7e-13	51.3	2.5	2.4	2	0	0	2	2	2	1	Universal	stress	protein	family
HTH_10	PF04967.12	gi|336254471|ref|YP_004597578.1|	-	8.2e-19	67.2	0.0	1.4e-18	66.4	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336254471|ref|YP_004597578.1|	-	1e-12	48.2	6.0	1e-12	48.2	6.0	2.4	1	1	1	2	2	2	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336254471|ref|YP_004597578.1|	-	2.7e-07	30.0	0.1	8.4e-07	28.4	0.1	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336254471|ref|YP_004597578.1|	-	7.7e-07	28.6	0.0	4.4e-06	26.1	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336254471|ref|YP_004597578.1|	-	2.5e-06	27.3	0.0	6.9e-06	25.9	0.0	1.8	1	0	0	1	1	1	1	MarR	family
HTH_3	PF01381.22	gi|336254471|ref|YP_004597578.1|	-	3.2e-05	23.9	0.0	9.2e-05	22.4	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
HTH_AsnC-type	PF13404.6	gi|336254471|ref|YP_004597578.1|	-	0.00035	20.3	0.2	0.001	18.9	0.2	1.8	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336254471|ref|YP_004597578.1|	-	0.00037	20.1	0.2	0.0016	18.1	0.2	2.0	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_31	PF13560.6	gi|336254471|ref|YP_004597578.1|	-	0.00038	20.8	1.0	0.012	15.9	0.1	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
Phage_CI_repr	PF07022.13	gi|336254471|ref|YP_004597578.1|	-	0.00089	19.3	0.0	0.002	18.2	0.0	1.5	1	0	0	1	1	1	1	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336254471|ref|YP_004597578.1|	-	0.0033	17.3	0.0	0.0064	16.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.6	gi|336254471|ref|YP_004597578.1|	-	0.0037	17.2	0.0	0.011	15.7	0.0	1.8	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|336254471|ref|YP_004597578.1|	-	0.004	16.9	0.0	0.01	15.6	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_50	PF18024.1	gi|336254471|ref|YP_004597578.1|	-	0.017	14.7	0.0	0.035	13.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|336254471|ref|YP_004597578.1|	-	0.022	14.6	0.0	0.042	13.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
P22_Cro	PF14549.6	gi|336254471|ref|YP_004597578.1|	-	0.038	13.8	0.0	0.081	12.8	0.0	1.5	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
YdaS_antitoxin	PF15943.5	gi|336254471|ref|YP_004597578.1|	-	0.038	13.8	0.0	0.08	12.8	0.0	1.4	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
Sigma70_ECF	PF07638.11	gi|336254471|ref|YP_004597578.1|	-	0.041	13.8	0.0	0.064	13.1	0.0	1.3	1	0	0	1	1	1	0	ECF	sigma	factor
Fe_dep_repress	PF01325.19	gi|336254471|ref|YP_004597578.1|	-	0.043	14.0	0.0	0.089	13.0	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_37	PF13744.6	gi|336254471|ref|YP_004597578.1|	-	0.048	13.6	0.0	0.095	12.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
KORA	PF16509.5	gi|336254471|ref|YP_004597578.1|	-	0.048	13.9	0.0	0.13	12.6	0.0	1.7	1	0	0	1	1	1	0	TrfB	plasmid	transcriptional	repressor
HTH_5	PF01022.20	gi|336254471|ref|YP_004597578.1|	-	0.048	13.5	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_1	PF00126.27	gi|336254471|ref|YP_004597578.1|	-	0.082	12.9	0.0	0.3	11.1	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_36	PF13730.6	gi|336254471|ref|YP_004597578.1|	-	0.12	12.4	0.0	0.28	11.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|336254471|ref|YP_004597578.1|	-	0.12	12.2	0.3	0.38	10.6	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
UPF0122	PF04297.14	gi|336254471|ref|YP_004597578.1|	-	0.12	12.6	0.0	0.22	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
LacI	PF00356.21	gi|336254471|ref|YP_004597578.1|	-	0.13	12.0	0.0	0.38	10.6	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HTH_22	PF13309.6	gi|336254471|ref|YP_004597578.1|	-	0.15	12.2	0.0	0.31	11.1	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_19	PF12844.7	gi|336254471|ref|YP_004597578.1|	-	0.2	11.7	0.0	0.74	9.9	0.0	2.0	2	0	0	2	2	1	0	Helix-turn-helix	domain
BAT	PF15915.5	gi|336254472|ref|YP_004597579.1|	-	3.3e-45	153.8	12.6	3.3e-45	153.8	12.6	5.9	6	1	0	6	6	6	1	GAF	and	HTH_10	associated	domain
PAS_4	PF08448.10	gi|336254472|ref|YP_004597579.1|	-	3.2e-20	72.4	10.2	3.7e-07	30.4	0.2	4.6	3	0	0	3	3	3	3	PAS	fold
HTH_10	PF04967.12	gi|336254472|ref|YP_004597579.1|	-	1.6e-17	63.0	0.0	5e-17	61.5	0.0	1.9	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.25	gi|336254472|ref|YP_004597579.1|	-	1.5e-13	50.7	0.0	1.7e-10	40.9	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|336254472|ref|YP_004597579.1|	-	2.1e-12	47.2	0.0	2.4e-06	27.7	0.0	3.6	3	1	0	3	3	3	2	PAS	domain
PAS_8	PF13188.7	gi|336254472|ref|YP_004597579.1|	-	3.3e-12	46.1	0.3	0.00062	19.7	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.12	gi|336254472|ref|YP_004597579.1|	-	1e-11	45.0	0.0	3.7e-10	39.9	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
GAF_2	PF13185.6	gi|336254472|ref|YP_004597579.1|	-	1.1e-11	45.2	16.6	6.9e-10	39.4	0.9	3.9	3	1	1	4	4	4	2	GAF	domain
GAF_3	PF13492.6	gi|336254472|ref|YP_004597579.1|	-	6.1e-07	29.8	3.6	0.0073	16.7	0.1	3.4	2	2	0	2	2	2	2	GAF	domain
GAF	PF01590.26	gi|336254472|ref|YP_004597579.1|	-	0.00011	22.8	0.2	0.001	19.7	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
Sigma70_ECF	PF07638.11	gi|336254472|ref|YP_004597579.1|	-	0.0048	16.8	0.0	0.017	15.0	0.0	2.0	1	0	0	1	1	1	1	ECF	sigma	factor
Sigma70_r4	PF04545.16	gi|336254472|ref|YP_004597579.1|	-	0.013	15.0	0.0	0.061	12.9	0.0	2.3	1	0	0	1	1	1	0	Sigma-70,	region	4
PAS_11	PF14598.6	gi|336254472|ref|YP_004597579.1|	-	0.028	14.5	0.0	0.056	13.6	0.0	1.4	1	0	0	1	1	1	0	PAS	domain
Response_reg	PF00072.24	gi|336254472|ref|YP_004597579.1|	-	0.038	14.2	0.2	0.1	12.8	0.0	1.8	2	0	0	2	2	1	0	Response	regulator	receiver	domain
Stealth_CR3	PF17102.5	gi|336254472|ref|YP_004597579.1|	-	0.078	12.9	0.1	12	5.9	0.0	3.0	2	0	0	2	2	2	0	Stealth	protein	CR3,	conserved	region	3
HTH_5	PF01022.20	gi|336254472|ref|YP_004597579.1|	-	0.13	12.2	0.0	0.32	10.9	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Usp	PF00582.26	gi|336254473|ref|YP_004597580.1|	-	1.7e-33	116.1	5.3	2e-33	115.9	5.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.16	gi|336254473|ref|YP_004597580.1|	-	0.019	15.7	0.2	0.027	15.2	0.2	1.5	1	1	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
ProQ	PF04352.13	gi|336254473|ref|YP_004597580.1|	-	0.044	13.7	0.3	0.06	13.2	0.3	1.4	1	0	0	1	1	1	0	ProQ/FINO	family
DsbD	PF02683.15	gi|336254475|ref|YP_004597582.1|	-	4.1e-08	33.4	15.4	5.7e-08	32.9	15.4	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Redoxin	PF08534.10	gi|336254476|ref|YP_004597583.1|	-	5.8e-13	48.8	0.0	7.3e-13	48.5	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.21	gi|336254476|ref|YP_004597583.1|	-	1.8e-11	44.1	0.0	2.4e-11	43.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin	PF00085.20	gi|336254476|ref|YP_004597583.1|	-	2.1e-06	27.6	0.0	1.2e-05	25.2	0.0	1.9	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|336254476|ref|YP_004597583.1|	-	7.8e-06	26.1	0.0	1.5e-05	25.2	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_7	PF13899.6	gi|336254476|ref|YP_004597583.1|	-	0.019	15.1	0.0	0.029	14.6	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like
TAT_signal	PF10518.9	gi|336254476|ref|YP_004597583.1|	-	1.6	8.7	5.0	2.8	7.9	5.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SCO1-SenC	PF02630.14	gi|336254477|ref|YP_004597584.1|	-	1.6e-16	60.4	0.1	6.1e-15	55.3	0.0	2.1	2	0	0	2	2	2	1	SCO1/SenC
AhpC-TSA	PF00578.21	gi|336254477|ref|YP_004597584.1|	-	0.0011	18.8	0.0	0.0016	18.3	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336254477|ref|YP_004597584.1|	-	0.0032	17.2	0.0	0.0046	16.7	0.0	1.2	1	0	0	1	1	1	1	Redoxin
TAT_signal	PF10518.9	gi|336254477|ref|YP_004597584.1|	-	0.075	12.9	0.1	0.15	11.9	0.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
zf-ribbon_3	PF13248.6	gi|336254478|ref|YP_004597585.1|	-	0.0011	18.3	3.4	0.048	13.1	0.6	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336254478|ref|YP_004597585.1|	-	0.012	15.8	3.4	1.7	8.9	0.6	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-LITAF-like	PF10601.9	gi|336254478|ref|YP_004597585.1|	-	0.016	15.5	1.0	3.5	7.9	0.4	2.0	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
UPF0547	PF10571.9	gi|336254478|ref|YP_004597585.1|	-	0.046	13.8	6.1	0.062	13.4	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
E7	PF00527.18	gi|336254478|ref|YP_004597585.1|	-	0.11	12.7	2.2	2	8.7	0.1	2.0	1	1	1	2	2	2	0	E7	protein,	Early	protein
CpXC	PF14353.6	gi|336254478|ref|YP_004597585.1|	-	0.14	12.2	1.5	11	6.0	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
Sgf11	PF08209.11	gi|336254478|ref|YP_004597585.1|	-	0.15	11.6	4.2	2.3	7.9	0.1	2.3	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Peptidase_M24	PF00557.24	gi|336254479|ref|YP_004597586.1|	-	2.3e-57	194.1	1.2	5.2e-57	192.9	1.2	1.6	1	1	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|336254479|ref|YP_004597586.1|	-	2.2e-22	80.1	0.0	5e-22	79.0	0.0	1.6	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Glyco_transf_20	PF00982.21	gi|336254480|ref|YP_004597587.1|	-	1.7e-117	393.0	0.0	2e-117	392.8	0.0	1.0	1	0	0	1	1	1	1	Glycosyltransferase	family	20
Glyco_trans_1_4	PF13692.6	gi|336254480|ref|YP_004597587.1|	-	0.0012	19.2	0.0	0.0026	18.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|336254480|ref|YP_004597587.1|	-	0.0041	16.7	0.0	0.019	14.5	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Trehalose_PPase	PF02358.16	gi|336254481|ref|YP_004597588.1|	-	1.5e-38	132.2	0.0	1.9e-38	131.9	0.0	1.1	1	0	0	1	1	1	1	Trehalose-phosphatase
HTH_24	PF13412.6	gi|336254482|ref|YP_004597589.1|	-	3.6e-08	32.8	0.0	5.4e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336254482|ref|YP_004597589.1|	-	6e-05	22.8	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|336254482|ref|YP_004597589.1|	-	0.0011	18.8	0.0	0.0018	18.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2250	PF10007.9	gi|336254482|ref|YP_004597589.1|	-	0.002	18.2	0.0	0.0033	17.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_20	PF12840.7	gi|336254482|ref|YP_004597589.1|	-	0.0073	16.3	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254482|ref|YP_004597589.1|	-	0.0076	16.1	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336254482|ref|YP_004597589.1|	-	0.032	14.1	0.0	0.048	13.5	0.0	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|336254482|ref|YP_004597589.1|	-	0.095	12.9	0.0	0.25	11.5	0.0	1.7	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.22	gi|336254482|ref|YP_004597589.1|	-	0.15	12.0	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
RelB_N	PF18506.1	gi|336254482|ref|YP_004597589.1|	-	1.1	9.2	3.9	6.3	6.7	0.1	2.6	3	0	0	3	3	3	0	RelB	Antitoxin	alpha	helical	domain
Peptidase_M10	PF00413.24	gi|336254483|ref|YP_004597590.1|	-	0.00019	21.3	0.0	0.00024	21.0	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Astacin	PF01400.24	gi|336254483|ref|YP_004597590.1|	-	0.00098	18.8	0.0	0.0014	18.2	0.0	1.2	1	0	0	1	1	1	1	Astacin	(Peptidase	family	M12A)
Peptidase_M66	PF10462.9	gi|336254483|ref|YP_004597590.1|	-	0.0041	16.1	0.0	0.0056	15.7	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M66
Reprolysin_5	PF13688.6	gi|336254483|ref|YP_004597590.1|	-	0.0052	17.0	0.0	0.008	16.3	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
DUF4953	PF16313.5	gi|336254483|ref|YP_004597590.1|	-	0.0075	15.5	1.3	0.012	14.9	1.3	1.2	1	0	0	1	1	1	1	Met-zincin
Peptidase_M43	PF05572.13	gi|336254483|ref|YP_004597590.1|	-	0.0083	16.0	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	Pregnancy-associated	plasma	protein-A
Reprolysin_3	PF13582.6	gi|336254483|ref|YP_004597590.1|	-	0.012	16.1	0.1	0.017	15.6	0.1	1.5	1	1	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.6	gi|336254483|ref|YP_004597590.1|	-	0.029	14.0	0.0	0.047	13.3	0.0	1.2	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.6	gi|336254483|ref|YP_004597590.1|	-	0.032	14.1	0.1	0.062	13.2	0.1	1.5	1	1	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Metallopep	PF12044.8	gi|336254483|ref|YP_004597590.1|	-	0.071	11.7	0.3	0.097	11.3	0.3	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Peptidase_M57	PF12388.8	gi|336254483|ref|YP_004597590.1|	-	0.19	11.3	1.3	0.31	10.6	1.3	1.2	1	0	0	1	1	1	0	Dual-action	HEIGH	metallo-peptidase
AF-4	PF05110.13	gi|336254486|ref|YP_004597593.1|	-	0.26	9.3	0.3	0.26	9.3	0.3	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
PALP	PF00291.25	gi|336254488|ref|YP_004597595.1|	-	3.1e-64	217.2	0.2	4.1e-64	216.8	0.2	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.26	gi|336254488|ref|YP_004597595.1|	-	0.005	16.8	0.2	0.011	15.8	0.2	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
Thioredoxin	PF00085.20	gi|336254489|ref|YP_004597596.1|	-	1.7e-07	31.2	0.0	2.1e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_9	PF14595.6	gi|336254489|ref|YP_004597596.1|	-	0.00085	19.1	0.0	0.0015	18.3	0.0	1.3	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|336254489|ref|YP_004597596.1|	-	0.022	14.8	0.0	0.035	14.2	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin	domain
Thioredoxin_7	PF13899.6	gi|336254489|ref|YP_004597596.1|	-	0.046	13.9	0.0	0.062	13.5	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like
Thioredoxin_8	PF13905.6	gi|336254489|ref|YP_004597596.1|	-	0.048	14.0	0.0	3.7	7.9	0.0	2.2	1	1	1	2	2	2	0	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|336254489|ref|YP_004597596.1|	-	0.086	13.3	0.1	0.37	11.2	0.1	1.9	1	1	0	1	1	1	0	Thioredoxin-like	domain
AhpC-TSA	PF00578.21	gi|336254489|ref|YP_004597596.1|	-	0.12	12.3	0.0	0.32	10.9	0.0	1.8	1	1	0	1	1	1	0	AhpC/TSA	family
Metallophos_2	PF12850.7	gi|336254490|ref|YP_004597597.1|	-	2.7e-11	43.9	0.0	0.00026	21.2	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|336254490|ref|YP_004597597.1|	-	1.2e-09	39.0	0.2	4.8e-08	33.7	0.1	2.1	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Thioredox_DsbH	PF03190.15	gi|336254491|ref|YP_004597598.1|	-	1.5e-73	246.1	0.0	2.6e-73	245.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|336254491|ref|YP_004597598.1|	-	9.4e-11	41.7	0.0	2e-10	40.7	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.11	gi|336254491|ref|YP_004597598.1|	-	3.6e-08	33.0	0.2	0.0033	16.7	0.0	3.1	2	1	1	3	3	3	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Glyco_hydro_88	PF07470.13	gi|336254491|ref|YP_004597598.1|	-	0.00013	21.2	0.3	0.0018	17.4	0.0	2.6	3	1	0	3	3	3	1	Glycosyl	Hydrolase	Family	88
Glyco_hydro_76	PF03663.14	gi|336254491|ref|YP_004597598.1|	-	0.0085	15.6	0.1	0.2	11.2	0.0	2.5	2	1	1	3	3	3	1	Glycosyl	hydrolase	family	76
C5-epim_C	PF06662.13	gi|336254491|ref|YP_004597598.1|	-	0.02	14.4	0.1	1.6	8.2	0.0	2.9	3	0	0	3	3	3	0	D-glucuronyl	C5-epimerase	C-terminus
RNA_GG_bind	PF10258.9	gi|336254491|ref|YP_004597598.1|	-	0.11	12.6	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	PHAX	RNA-binding	domain
cwf21	PF08312.12	gi|336254491|ref|YP_004597598.1|	-	2	8.6	7.1	0.99	9.6	0.9	3.4	4	0	0	4	4	4	0	cwf21	domain
Fructosamin_kin	PF03881.14	gi|336254492|ref|YP_004597599.1|	-	4.1e-54	183.7	0.0	5.5e-54	183.3	0.0	1.0	1	0	0	1	1	1	1	Fructosamine	kinase
APH	PF01636.23	gi|336254492|ref|YP_004597599.1|	-	3.9e-16	59.7	5.6	5e-16	59.3	5.6	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
EcKinase	PF02958.20	gi|336254492|ref|YP_004597599.1|	-	0.11	11.8	0.0	0.19	11.0	0.0	1.4	1	0	0	1	1	1	0	Ecdysteroid	kinase
RIO1	PF01163.22	gi|336254492|ref|YP_004597599.1|	-	0.14	11.7	0.0	4.4	6.9	0.0	2.1	2	0	0	2	2	2	0	RIO1	family
DHFR_1	PF00186.19	gi|336254493|ref|YP_004597600.1|	-	7.2e-49	165.6	0.0	8.5e-49	165.3	0.0	1.1	1	0	0	1	1	1	1	Dihydrofolate	reductase
ArAE_2	PF10334.9	gi|336254493|ref|YP_004597600.1|	-	0.25	11.2	0.0	0.34	10.7	0.0	1.1	1	0	0	1	1	1	0	Aromatic	acid	exporter	family	member	2
Thymidylat_synt	PF00303.19	gi|336254494|ref|YP_004597601.1|	-	1.4e-95	319.4	0.0	1.8e-95	319.1	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase
RNase_H_2	PF13482.6	gi|336254495|ref|YP_004597602.1|	-	2.7e-38	131.6	0.0	3.6e-38	131.2	0.0	1.2	1	0	0	1	1	1	1	RNase_H	superfamily
HHH_5	PF14520.6	gi|336254495|ref|YP_004597602.1|	-	1.6e-10	41.4	0.0	3.9e-10	40.2	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|336254495|ref|YP_004597602.1|	-	0.00018	21.2	0.2	0.014	15.2	0.0	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|336254495|ref|YP_004597602.1|	-	0.02	14.7	0.0	0.072	12.9	0.0	1.9	1	1	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
SnoaL_2	PF12680.7	gi|336254495|ref|YP_004597602.1|	-	0.023	15.3	8.5	0.11	13.1	2.7	3.5	2	1	1	3	3	3	0	SnoaL-like	domain
HHH_2	PF12826.7	gi|336254495|ref|YP_004597602.1|	-	0.067	13.3	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
DEAD	PF00270.29	gi|336254496|ref|YP_004597603.1|	-	1.7e-20	73.5	0.0	2.2e-19	69.9	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.10	gi|336254496|ref|YP_004597603.1|	-	7.6e-15	55.4	0.2	7.2e-14	52.3	0.2	2.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.31	gi|336254496|ref|YP_004597603.1|	-	7.9e-11	42.3	0.0	4.1e-10	40.0	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|336254496|ref|YP_004597603.1|	-	7.5e-09	35.8	0.0	1.1e-08	35.2	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Methyltransf_24	PF13578.6	gi|336254496|ref|YP_004597603.1|	-	0.1	13.6	3.8	0.16	13.0	0.1	3.1	3	1	0	3	3	3	0	Methyltransferase	domain
TPR_10	PF13374.6	gi|336254496|ref|YP_004597603.1|	-	0.16	11.8	0.8	0.57	10.1	0.8	2.0	1	0	0	1	1	1	0	Tetratricopeptide	repeat
DUF2304	PF10066.9	gi|336254497|ref|YP_004597604.1|	-	0.036	14.3	1.7	0.047	13.9	1.7	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2304)
EutH	PF04346.12	gi|336254498|ref|YP_004597605.1|	-	0.022	13.9	1.3	0.032	13.4	1.3	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein,	EutH
Peptidase_U4	PF03419.13	gi|336254498|ref|YP_004597605.1|	-	0.28	10.4	4.3	0.33	10.2	4.3	1.2	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
TraQ	PF09679.10	gi|336254498|ref|YP_004597605.1|	-	0.53	10.2	0.0	0.53	10.2	0.0	2.6	2	1	1	3	3	3	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
DUF2238	PF09997.9	gi|336254499|ref|YP_004597606.1|	-	0.024	14.4	4.6	0.26	11.1	4.6	2.1	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2238)
DUF4233	PF14017.6	gi|336254499|ref|YP_004597606.1|	-	0.098	13.0	17.7	0.052	13.9	4.8	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4233)
MitoNEET_N	PF10660.9	gi|336254499|ref|YP_004597606.1|	-	0.43	10.6	2.4	0.45	10.6	0.1	2.3	2	1	0	2	2	2	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
DUF983	PF06170.12	gi|336254499|ref|YP_004597606.1|	-	1.8	9.0	6.1	18	5.8	0.4	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
TAT_signal	PF10518.9	gi|336254500|ref|YP_004597607.1|	-	0.0032	17.2	8.2	0.0056	16.5	8.2	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336254500|ref|YP_004597607.1|	-	0.0055	16.0	1.3	0.011	15.0	1.3	1.5	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
GARS_A	PF01071.19	gi|336254501|ref|YP_004597608.1|	-	8.7e-54	182.3	0.2	1.6e-53	181.4	0.0	1.5	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|336254501|ref|YP_004597608.1|	-	6.5e-22	78.1	0.1	1.3e-21	77.1	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|336254501|ref|YP_004597608.1|	-	2.5e-13	50.1	0.1	5.9e-13	48.9	0.1	1.7	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_3	PF02655.14	gi|336254501|ref|YP_004597608.1|	-	2.2e-05	24.5	0.0	4.1e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|336254501|ref|YP_004597608.1|	-	0.01	15.1	0.0	0.03	13.6	0.0	1.7	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
CPSase_L_D2	PF02786.17	gi|336254501|ref|YP_004597608.1|	-	0.011	15.3	0.0	0.02	14.4	0.0	1.4	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.6	gi|336254501|ref|YP_004597608.1|	-	0.55	9.8	2.1	0.63	9.6	0.1	2.2	3	0	0	3	3	3	0	ATP-grasp	domain
DUF2939	PF11159.8	gi|336254502|ref|YP_004597609.1|	-	0.036	14.5	1.2	0.34	11.3	0.5	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2939)
Aminotran_3	PF00202.21	gi|336254503|ref|YP_004597610.1|	-	1.4e-72	244.6	0.0	1.9e-71	240.8	0.0	1.9	1	1	0	1	1	1	1	Aminotransferase	class-III
DUF4010	PF13194.6	gi|336254504|ref|YP_004597611.1|	-	4.5e-50	170.3	32.6	4.5e-50	170.3	32.6	2.4	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|336254504|ref|YP_004597611.1|	-	3.8e-24	85.4	12.7	3.8e-24	85.4	12.7	3.8	2	1	1	3	3	3	1	MgtC	family
zf-NADH-PPase	PF09297.11	gi|336254505|ref|YP_004597612.1|	-	0.0013	18.3	0.3	0.91	9.2	0.2	2.3	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
UPF0547	PF10571.9	gi|336254505|ref|YP_004597612.1|	-	0.017	15.2	0.3	0.041	14.0	0.3	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.7	gi|336254505|ref|YP_004597612.1|	-	0.023	14.7	0.2	0.04	13.9	0.2	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|336254505|ref|YP_004597612.1|	-	0.05	14.3	0.8	0.05	14.3	0.8	1.8	1	1	1	2	2	2	0	zinc-ribbon	family
S_4TM	PF18159.1	gi|336254505|ref|YP_004597612.1|	-	0.06	12.6	0.3	0.069	12.4	0.3	1.0	1	0	0	1	1	1	0	SMODS-associating	4TM	effector	domain
A2L_zn_ribbon	PF08792.10	gi|336254505|ref|YP_004597612.1|	-	0.11	12.2	1.7	0.94	9.3	0.2	2.1	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
PadR	PF03551.14	gi|336254506|ref|YP_004597613.1|	-	1.4e-18	66.6	1.9	1.7e-18	66.4	1.9	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|336254506|ref|YP_004597613.1|	-	0.0044	16.8	0.0	0.0065	16.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|336254506|ref|YP_004597613.1|	-	0.0072	16.3	0.0	0.011	15.8	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|336254506|ref|YP_004597613.1|	-	0.0084	16.6	0.2	0.011	16.3	0.2	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|336254506|ref|YP_004597613.1|	-	0.02	14.8	0.5	2.1	8.3	0.1	2.6	3	0	0	3	3	3	0	MarR	family
DUF4364	PF14277.6	gi|336254506|ref|YP_004597613.1|	-	0.1	12.4	0.0	0.17	11.6	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF2172	PF09940.9	gi|336254507|ref|YP_004597614.1|	-	0.012	16.0	0.1	0.013	15.9	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2172)
NMT	PF01233.19	gi|336254507|ref|YP_004597614.1|	-	0.1	12.4	0.3	0.11	12.4	0.3	1.0	1	0	0	1	1	1	0	Myristoyl-CoA:protein	N-myristoyltransferase,	N-terminal	domain
CarboxypepD_reg	PF13620.6	gi|336254508|ref|YP_004597615.1|	-	2.3e-10	40.6	1.5	4.3e-05	23.7	0.1	2.6	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.16	gi|336254508|ref|YP_004597615.1|	-	8.8e-07	28.8	2.5	2.4e-05	24.2	0.6	3.0	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
CarbopepD_reg_2	PF13715.6	gi|336254508|ref|YP_004597615.1|	-	3.2e-06	27.0	0.6	0.057	13.4	0.1	2.8	2	1	0	2	2	2	2	CarboxypepD_reg-like	domain
Invasin_D3	PF09134.10	gi|336254508|ref|YP_004597615.1|	-	0.00017	21.8	8.8	0.00038	20.7	1.4	2.7	1	1	1	2	2	2	1	Invasin,	domain	3
DUF824	PF05688.11	gi|336254508|ref|YP_004597615.1|	-	0.0046	16.7	0.1	0.0092	15.8	0.1	1.5	1	0	0	1	1	1	1	Salmonella	repeat	of	unknown	function	(DUF824)
MG4	PF17789.1	gi|336254508|ref|YP_004597615.1|	-	0.0077	16.4	0.3	0.037	14.2	0.1	2.2	2	0	0	2	2	2	1	Macroglobulin	domain	MG4
Y_Y_Y	PF07495.13	gi|336254508|ref|YP_004597615.1|	-	0.013	15.4	0.0	0.12	12.3	0.0	2.4	2	0	0	2	2	2	0	Y_Y_Y	domain
DUF2606	PF10794.9	gi|336254508|ref|YP_004597615.1|	-	0.022	14.5	2.5	1	9.1	0.9	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2606)
Dioxygenase_C	PF00775.21	gi|336254508|ref|YP_004597615.1|	-	0.15	11.5	2.9	0.18	11.3	1.5	1.7	2	0	0	2	2	2	0	Dioxygenase
UPF0560	PF10577.9	gi|336254508|ref|YP_004597615.1|	-	2.1	6.8	15.2	3	6.3	15.2	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0560
HypA	PF01155.19	gi|336254509|ref|YP_004597616.1|	-	0.0024	17.9	0.2	0.012	15.6	0.2	2.1	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|336254509|ref|YP_004597616.1|	-	0.018	14.6	1.5	0.046	13.2	1.5	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|336254509|ref|YP_004597616.1|	-	0.019	15.0	0.2	0.034	14.2	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2072	PF09845.9	gi|336254509|ref|YP_004597616.1|	-	0.09	13.0	0.1	0.19	12.0	0.1	1.5	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
DUF1451	PF07295.11	gi|336254509|ref|YP_004597616.1|	-	0.091	12.8	0.4	0.3	11.1	0.4	1.9	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-IS66	PF13005.7	gi|336254509|ref|YP_004597616.1|	-	0.16	12.4	1.8	3.4	8.2	0.1	2.7	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_Tnp_IS91	PF14319.6	gi|336254509|ref|YP_004597616.1|	-	0.17	12.0	0.2	0.35	10.9	0.2	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Zn-ribbon_8	PF09723.10	gi|336254509|ref|YP_004597616.1|	-	0.25	11.5	1.5	0.69	10.1	1.5	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|336254509|ref|YP_004597616.1|	-	1.9	8.6	4.7	1.3	9.2	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS1595	PF12760.7	gi|336254509|ref|YP_004597616.1|	-	1.9	8.5	5.6	8.3	6.5	0.1	2.7	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
THF_DHG_CYH_C	PF02882.19	gi|336254510|ref|YP_004597617.1|	-	1.8e-67	225.7	1.1	2.4e-67	225.2	1.1	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|336254510|ref|YP_004597617.1|	-	2.3e-36	124.6	0.0	3.5e-36	124.0	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
AlaDh_PNT_C	PF01262.21	gi|336254510|ref|YP_004597617.1|	-	0.027	13.8	0.6	0.042	13.1	0.6	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Osteopontin	PF00865.18	gi|336254511|ref|YP_004597618.1|	-	0.47	9.9	3.8	0.71	9.3	3.8	1.2	1	0	0	1	1	1	0	Osteopontin
Methyltransf_25	PF13649.6	gi|336254512|ref|YP_004597619.1|	-	0.0015	19.2	0.1	0.0026	18.4	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254512|ref|YP_004597619.1|	-	0.023	14.5	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254512|ref|YP_004597619.1|	-	0.037	14.7	0.0	0.062	14.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
SHMT	PF00464.19	gi|336254513|ref|YP_004597620.1|	-	1.1e-155	518.2	0.0	1.3e-155	518.0	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.21	gi|336254513|ref|YP_004597620.1|	-	8.1e-09	35.2	0.1	0.0021	17.4	0.1	2.1	2	0	0	2	2	2	2	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|336254513|ref|YP_004597620.1|	-	3.4e-08	33.1	0.0	1.2e-07	31.3	0.0	1.7	1	1	1	2	2	2	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|336254513|ref|YP_004597620.1|	-	0.021	14.2	0.1	0.028	13.7	0.1	1.2	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
RNase_P_p30	PF01876.16	gi|336254516|ref|YP_004597623.1|	-	4e-35	121.2	0.0	4.9e-35	120.9	0.0	1.0	1	0	0	1	1	1	1	RNase	P	subunit	p30
Methyltransf_25	PF13649.6	gi|336254517|ref|YP_004597624.1|	-	1.2e-17	64.3	0.0	2.5e-17	63.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254517|ref|YP_004597624.1|	-	1.2e-13	51.5	0.1	7e-13	49.0	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254517|ref|YP_004597624.1|	-	1.8e-13	50.6	0.0	2.7e-13	50.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336254517|ref|YP_004597624.1|	-	1.5e-10	41.7	0.0	2.6e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336254517|ref|YP_004597624.1|	-	2.1e-10	40.4	0.0	3.6e-10	39.6	0.0	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|336254517|ref|YP_004597624.1|	-	1.4e-07	31.5	0.0	6e-07	29.4	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|336254517|ref|YP_004597624.1|	-	2.8e-06	27.0	0.0	3.8e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|336254517|ref|YP_004597624.1|	-	0.0066	15.9	0.0	0.0092	15.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.20	gi|336254517|ref|YP_004597624.1|	-	0.0086	15.2	0.0	0.01	14.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_18	PF12847.7	gi|336254517|ref|YP_004597624.1|	-	0.0093	15.9	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.12	gi|336254517|ref|YP_004597624.1|	-	0.0098	15.0	0.0	0.014	14.5	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_32	PF13679.6	gi|336254517|ref|YP_004597624.1|	-	0.013	15.5	0.0	0.018	15.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|336254517|ref|YP_004597624.1|	-	0.023	14.0	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
PCMT	PF01135.19	gi|336254517|ref|YP_004597624.1|	-	0.065	13.0	0.0	0.089	12.5	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
tRNA_U5-meth_tr	PF05958.11	gi|336254517|ref|YP_004597624.1|	-	0.086	11.8	0.0	0.2	10.6	0.0	1.4	1	1	1	2	2	2	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_4	PF02390.17	gi|336254517|ref|YP_004597624.1|	-	0.16	11.4	0.0	0.25	10.8	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
RNase_P_Rpp14	PF01900.19	gi|336254518|ref|YP_004597625.1|	-	7.3e-19	67.9	0.0	9.8e-19	67.5	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
Proteasome	PF00227.26	gi|336254519|ref|YP_004597626.1|	-	9.5e-56	188.3	0.0	1.2e-55	188.0	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|336254519|ref|YP_004597626.1|	-	8.9e-14	50.9	0.1	1.5e-13	50.1	0.1	1.4	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
SBDS	PF01172.18	gi|336254520|ref|YP_004597627.1|	-	1.7e-20	72.9	0.0	2.8e-20	72.2	0.0	1.4	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|336254520|ref|YP_004597627.1|	-	1.2e-18	67.2	0.0	3.3e-18	65.8	0.0	1.7	2	0	0	2	2	2	1	SBDS	protein	C-terminal	domain
RCDG1	PF15725.5	gi|336254520|ref|YP_004597627.1|	-	0.042	14.3	0.1	0.11	12.9	0.1	1.8	1	0	0	1	1	1	0	Renal	cancer	differentiation	gene	1	protein
YbjN	PF10722.9	gi|336254520|ref|YP_004597627.1|	-	0.049	13.7	0.2	0.82	9.7	0.0	2.2	2	0	0	2	2	2	0	Putative	bacterial	sensory	transduction	regulator
FUN14	PF04930.15	gi|336254521|ref|YP_004597628.1|	-	2.6e-16	59.8	5.7	3.6e-16	59.4	5.7	1.2	1	0	0	1	1	1	1	FUN14	family
GTP-bdg_N	PF13167.6	gi|336254522|ref|YP_004597629.1|	-	6.3e-23	81.3	0.0	1.6e-22	80.0	0.0	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|336254522|ref|YP_004597629.1|	-	2.3e-18	66.3	0.0	5.2e-18	65.2	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|336254522|ref|YP_004597629.1|	-	1.7e-16	60.6	7.9	3.5e-16	59.6	7.9	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
GTP_EFTU	PF00009.27	gi|336254522|ref|YP_004597629.1|	-	1e-10	41.5	0.2	3.2e-10	39.9	0.2	1.8	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|336254522|ref|YP_004597629.1|	-	2e-08	34.3	0.1	0.0011	18.9	0.1	2.4	2	0	0	2	2	2	2	RsgA	GTPase
MMR_HSR1_Xtn	PF16897.5	gi|336254522|ref|YP_004597629.1|	-	4.9e-06	26.5	0.1	9.8e-06	25.5	0.1	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
cobW	PF02492.19	gi|336254522|ref|YP_004597629.1|	-	9.9e-06	25.3	0.4	0.0019	17.8	0.1	2.4	1	1	1	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
FeoB_N	PF02421.18	gi|336254522|ref|YP_004597629.1|	-	0.00013	21.5	0.2	0.099	12.2	0.1	2.6	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
Arf	PF00025.21	gi|336254522|ref|YP_004597629.1|	-	0.0033	16.9	0.2	1.1	8.6	0.1	2.5	2	0	0	2	2	2	2	ADP-ribosylation	factor	family
MnmE_helical	PF12631.7	gi|336254522|ref|YP_004597629.1|	-	0.0082	16.3	0.1	0.014	15.6	0.1	1.3	1	0	0	1	1	1	1	MnmE	helical	domain
DUF2046	PF09755.9	gi|336254522|ref|YP_004597629.1|	-	0.0097	15.2	1.2	0.06	12.6	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	H4	(DUF2046)
AAA_16	PF13191.6	gi|336254522|ref|YP_004597629.1|	-	0.017	15.5	3.0	0.018	15.4	0.7	2.2	1	1	1	2	2	2	0	AAA	ATPase	domain
Roc	PF08477.13	gi|336254522|ref|YP_004597629.1|	-	0.034	14.4	0.1	10	6.4	0.0	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_14	PF13173.6	gi|336254522|ref|YP_004597629.1|	-	0.04	14.0	0.0	0.12	12.4	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
AAA_18	PF13238.6	gi|336254522|ref|YP_004597629.1|	-	0.046	14.3	0.0	0.38	11.3	0.0	2.5	1	1	1	2	2	2	0	AAA	domain
DUF2408	PF10303.9	gi|336254522|ref|YP_004597629.1|	-	0.048	14.2	0.8	4.3	7.9	0.2	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2408)
ABC_tran	PF00005.27	gi|336254522|ref|YP_004597629.1|	-	0.05	14.1	0.0	0.13	12.7	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
NOG1	PF06858.14	gi|336254522|ref|YP_004597629.1|	-	0.05	13.4	0.2	0.16	11.8	0.2	1.9	1	0	0	1	1	1	0	Nucleolar	GTP-binding	protein	1	(NOG1)
AAA_25	PF13481.6	gi|336254522|ref|YP_004597629.1|	-	0.054	13.1	1.1	1.5	8.4	0.3	3.0	2	1	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|336254522|ref|YP_004597629.1|	-	0.11	13.0	1.8	17	5.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Thiolase_N	PF00108.23	gi|336254523|ref|YP_004597630.1|	-	2.5e-56	190.9	0.0	3.3e-56	190.5	0.0	1.1	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|336254523|ref|YP_004597630.1|	-	1.2e-07	31.4	0.1	4.2e-07	29.7	0.1	1.8	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|336254523|ref|YP_004597630.1|	-	0.0072	16.3	0.1	13	5.8	0.0	3.3	3	0	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|336254523|ref|YP_004597630.1|	-	0.17	11.4	4.1	0.58	9.7	0.8	2.4	1	1	2	3	3	3	0	Beta-ketoacyl	synthase,	N-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|336254524|ref|YP_004597631.1|	-	5.3e-06	26.3	0.9	7.7e-06	25.8	0.9	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF3268	PF11672.8	gi|336254525|ref|YP_004597632.1|	-	0.03	14.6	0.0	0.046	14.1	0.0	1.3	1	0	0	1	1	1	0	zinc-finger-containing	domain
APG17	PF04108.12	gi|336254526|ref|YP_004597633.1|	-	0.0047	16.1	0.1	0.029	13.5	0.0	1.9	1	1	1	2	2	2	2	Autophagy	protein	Apg17
COMP	PF11598.8	gi|336254526|ref|YP_004597633.1|	-	0.78	10.3	2.8	1.8	9.1	0.9	2.3	2	0	0	2	2	2	0	Cartilage	oligomeric	matrix	protein
Cnn_1N	PF07989.11	gi|336254526|ref|YP_004597633.1|	-	0.89	9.8	6.9	8	6.7	0.4	3.3	3	1	0	3	3	3	0	Centrosomin	N-terminal	motif	1
DUF4148	PF13663.6	gi|336254526|ref|YP_004597633.1|	-	8.2	6.7	7.2	7.7	6.8	0.4	3.3	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4148)
RNase_H_2	PF13482.6	gi|336254528|ref|YP_004597635.1|	-	2e-34	119.0	0.0	2.5e-34	118.6	0.0	1.1	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.20	gi|336254528|ref|YP_004597635.1|	-	0.017	14.8	0.0	0.022	14.5	0.0	1.3	1	1	0	1	1	1	0	3'-5'	exonuclease
4HBT_2	PF13279.6	gi|336254529|ref|YP_004597636.1|	-	2e-16	60.6	0.0	2.5e-16	60.3	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.22	gi|336254529|ref|YP_004597636.1|	-	9.8e-14	51.5	0.1	1.3e-13	51.1	0.1	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|336254529|ref|YP_004597636.1|	-	2.2e-09	37.0	0.0	4.3e-09	36.0	0.0	1.5	1	1	0	1	1	1	1	Acyl-ACP	thioesterase
3-alpha	PF03475.14	gi|336254529|ref|YP_004597636.1|	-	0.072	13.0	1.4	0.22	11.4	0.1	2.1	2	0	0	2	2	2	0	3-alpha	domain
HalOD1	PF18545.1	gi|336254530|ref|YP_004597637.1|	-	1.1e-30	105.7	1.5	1.3e-30	105.5	1.5	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
baeRF_family5	PF18846.1	gi|336254531|ref|YP_004597638.1|	-	0.17	12.1	0.0	0.31	11.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	5
Acetyltransf_1	PF00583.25	gi|336254533|ref|YP_004597640.1|	-	1.5e-20	73.6	0.1	1.9e-20	73.2	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336254533|ref|YP_004597640.1|	-	9.5e-14	51.4	0.0	1.5e-13	50.8	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336254533|ref|YP_004597640.1|	-	2.8e-12	46.9	0.0	3.6e-12	46.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336254533|ref|YP_004597640.1|	-	1.1e-09	38.1	0.0	1.8e-09	37.4	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|336254533|ref|YP_004597640.1|	-	1.3e-08	35.6	0.1	1.6e-08	35.4	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336254533|ref|YP_004597640.1|	-	2.1e-07	31.1	0.1	4.1e-07	30.1	0.1	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336254533|ref|YP_004597640.1|	-	4.6e-06	26.7	0.0	1e-05	25.5	0.0	1.6	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.6	gi|336254533|ref|YP_004597640.1|	-	4.8e-05	23.1	0.2	6.4e-05	22.7	0.2	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|336254533|ref|YP_004597640.1|	-	0.0018	18.2	0.0	0.0038	17.2	0.0	1.5	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
PanZ	PF12568.8	gi|336254533|ref|YP_004597640.1|	-	0.0024	17.6	0.1	0.0054	16.4	0.0	1.6	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_4	PF13420.7	gi|336254533|ref|YP_004597640.1|	-	0.027	14.6	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
ZNRF_3_ecto	PF18212.1	gi|336254533|ref|YP_004597640.1|	-	0.048	13.7	0.0	0.081	12.9	0.0	1.4	1	0	0	1	1	1	0	ZNRF-3	Ectodomain
Acetyltransf_15	PF17013.5	gi|336254533|ref|YP_004597640.1|	-	0.15	11.5	0.0	0.46	9.9	0.0	1.8	1	1	0	1	1	1	0	Putative	acetyl-transferase
Acetyltransf_6	PF13480.7	gi|336254533|ref|YP_004597640.1|	-	0.16	12.1	9.0	0.037	14.2	4.3	2.0	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
CBS	PF00571.28	gi|336254534|ref|YP_004597641.1|	-	1.8e-22	79.5	7.2	3.2e-14	53.1	1.2	2.2	2	0	0	2	2	2	2	CBS	domain
zf-RRN7	PF11781.8	gi|336254534|ref|YP_004597641.1|	-	0.012	15.3	0.8	0.019	14.6	0.8	1.4	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
OrfB_Zn_ribbon	PF07282.11	gi|336254534|ref|YP_004597641.1|	-	0.036	14.0	1.3	0.062	13.2	0.3	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|336254534|ref|YP_004597641.1|	-	0.062	13.4	1.0	0.12	12.5	1.0	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
Thi4	PF01946.17	gi|336254534|ref|YP_004597641.1|	-	0.089	12.0	0.2	0.21	10.8	0.1	1.5	1	1	0	1	1	1	0	Thi4	family
Desulfoferrod_N	PF06397.12	gi|336254534|ref|YP_004597641.1|	-	0.12	12.1	1.0	0.22	11.2	1.0	1.3	1	0	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
TF_Zn_Ribbon	PF08271.12	gi|336254534|ref|YP_004597641.1|	-	0.46	10.0	7.2	1.6	8.3	3.6	3.0	2	1	1	3	3	3	0	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.12	gi|336254534|ref|YP_004597641.1|	-	0.47	10.4	2.8	1.3	9.0	2.8	1.7	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
GCH_III	PF05165.12	gi|336254535|ref|YP_004597642.1|	-	3e-94	314.9	0.2	3.8e-94	314.6	0.2	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	III
GGDEF_2	PF17853.1	gi|336254535|ref|YP_004597642.1|	-	1.2e-10	41.7	0.1	2.7e-05	24.4	0.0	2.1	2	0	0	2	2	2	2	GGDEF-like	domain
mCpol	PF18182.1	gi|336254535|ref|YP_004597642.1|	-	0.002	18.5	0.0	0.036	14.4	0.0	2.1	2	0	0	2	2	2	1	minimal	CRISPR	polymerase	domain
HOCHOB	PF17943.1	gi|336254536|ref|YP_004597643.1|	-	0.071	13.8	0.0	0.092	13.5	0.0	1.1	1	0	0	1	1	1	0	Homeobox-cysteine	loop-homeobox
RNA_pol_Rpb2_5	PF04567.17	gi|336254536|ref|YP_004597643.1|	-	0.11	13.0	0.7	0.11	13.0	0.7	1.9	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	5
G_glu_transpept	PF01019.21	gi|336254537|ref|YP_004597644.1|	-	7.7e-141	470.3	0.0	9.1e-141	470.1	0.0	1.1	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
UCR_Fe-S_N	PF10399.9	gi|336254537|ref|YP_004597644.1|	-	0.072	12.5	2.4	0.18	11.2	2.4	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
CoA_transf_3	PF02515.17	gi|336254539|ref|YP_004597646.1|	-	3.4e-125	418.0	0.0	3.8e-125	417.8	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
DUF3850	PF12961.7	gi|336254539|ref|YP_004597646.1|	-	0.081	13.0	0.7	0.19	11.8	0.1	1.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3850)
MPTase-PolyVal	PF18818.1	gi|336254539|ref|YP_004597646.1|	-	0.18	11.9	0.1	0.3	11.1	0.1	1.3	1	0	0	1	1	1	0	Metallopeptidase	superfamily	domain
B12-binding	PF02310.19	gi|336254540|ref|YP_004597647.1|	-	2.4e-17	63.1	1.4	3e-17	62.8	1.4	1.1	1	0	0	1	1	1	1	B12	binding	domain
ADH_zinc_N	PF00107.26	gi|336254540|ref|YP_004597647.1|	-	0.011	15.6	0.2	0.25	11.3	0.0	2.1	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Met_asp_mut_E	PF06368.11	gi|336254541|ref|YP_004597648.1|	-	1.5e-206	686.1	0.0	1.7e-206	685.9	0.0	1.0	1	0	0	1	1	1	1	Methylaspartate	mutase	E	chain	(MutE)
MAAL_C	PF07476.11	gi|336254542|ref|YP_004597649.1|	-	1.2e-114	381.7	0.0	1.7e-114	381.1	0.0	1.2	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
MAAL_N	PF05034.13	gi|336254542|ref|YP_004597649.1|	-	4.6e-69	231.1	0.4	8.1e-69	230.3	0.4	1.4	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	N-terminus
MR_MLE_C	PF13378.6	gi|336254542|ref|YP_004597649.1|	-	4.6e-13	49.2	0.1	7.9e-13	48.5	0.1	1.4	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
ASL_C2	PF14698.6	gi|336254542|ref|YP_004597649.1|	-	0.026	15.3	0.6	0.4	11.5	0.3	2.8	2	0	0	2	2	2	0	Argininosuccinate	lyase	C-terminal
DUF2514	PF10721.9	gi|336254542|ref|YP_004597649.1|	-	4.7	7.2	9.1	1.5	8.9	1.8	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2514)
MaoC_dehydratas	PF01575.19	gi|336254543|ref|YP_004597650.1|	-	5e-08	32.5	0.0	5.3e-05	22.8	0.0	2.3	2	0	0	2	2	2	2	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|336254543|ref|YP_004597650.1|	-	4.5e-06	26.8	0.0	0.022	14.9	0.0	2.5	2	0	0	2	2	2	2	N-terminal	half	of	MaoC	dehydratase
HpcH_HpaI	PF03328.14	gi|336254544|ref|YP_004597651.1|	-	3.6e-15	55.7	0.0	1.4e-14	53.8	0.0	2.0	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
Malate_synthase	PF01274.22	gi|336254544|ref|YP_004597651.1|	-	0.058	11.6	0.0	0.63	8.2	0.0	2.1	2	1	1	3	3	3	0	Malate	synthase
OsmC	PF02566.19	gi|336254545|ref|YP_004597652.1|	-	1.7e-17	63.7	0.0	3.8e-17	62.6	0.0	1.5	2	0	0	2	2	2	1	OsmC-like	protein
CARM1	PF11531.8	gi|336254545|ref|YP_004597652.1|	-	0.1	12.8	0.1	0.21	11.8	0.1	1.5	1	0	0	1	1	1	0	Coactivator-associated	arginine	methyltransferase	1	N	terminal
DUF21	PF01595.20	gi|336254546|ref|YP_004597653.1|	-	6e-47	159.6	1.5	7.8e-47	159.2	1.5	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|336254546|ref|YP_004597653.1|	-	4.3e-21	74.7	1.1	1.5e-20	73.0	1.1	2.0	1	0	0	1	1	1	1	Transporter	associated	domain
CBS	PF00571.28	gi|336254546|ref|YP_004597653.1|	-	3.6e-16	59.3	5.4	1.1e-08	35.3	1.0	2.7	2	0	0	2	2	2	2	CBS	domain
DUF2064	PF09837.9	gi|336254547|ref|YP_004597654.1|	-	0.00013	21.8	0.0	0.00028	20.7	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
Abhydrolase_6	PF12697.7	gi|336254549|ref|YP_004597656.1|	-	3.2e-23	83.5	7.2	3.7e-23	83.3	7.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336254549|ref|YP_004597656.1|	-	3.4e-23	82.6	0.0	1.4e-20	74.1	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336254549|ref|YP_004597656.1|	-	4.6e-19	68.6	0.1	7.6e-19	67.9	0.1	1.4	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Ser_hydrolase	PF06821.13	gi|336254549|ref|YP_004597656.1|	-	0.031	14.1	0.1	0.07	13.0	0.0	1.6	2	0	0	2	2	2	0	Serine	hydrolase
Abhydro_lipase	PF04083.16	gi|336254549|ref|YP_004597656.1|	-	0.079	12.5	0.0	0.2	11.2	0.0	1.7	1	0	0	1	1	1	0	Partial	alpha/beta-hydrolase	lipase	region
Thioesterase	PF00975.20	gi|336254549|ref|YP_004597656.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	Thioesterase	domain
Peptidase_S9	PF00326.21	gi|336254549|ref|YP_004597656.1|	-	0.14	11.6	0.0	0.6	9.5	0.0	2.0	1	1	1	2	2	2	0	Prolyl	oligopeptidase	family
Esterase	PF00756.20	gi|336254549|ref|YP_004597656.1|	-	0.15	11.7	0.2	0.39	10.3	0.1	1.7	1	1	0	1	1	1	0	Putative	esterase
UDG	PF03167.19	gi|336254550|ref|YP_004597657.1|	-	2.7e-18	66.4	0.0	3.6e-18	66.0	0.0	1.2	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
ParA	PF10609.9	gi|336254552|ref|YP_004597659.1|	-	1.3e-100	335.9	0.0	1.6e-100	335.7	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
FeS_assembly_P	PF01883.19	gi|336254552|ref|YP_004597659.1|	-	1.1e-15	57.5	1.5	2.1e-15	56.7	0.8	1.9	2	0	0	2	2	2	1	Iron-sulfur	cluster	assembly	protein
CbiA	PF01656.23	gi|336254552|ref|YP_004597659.1|	-	6.2e-15	55.4	0.0	4.7e-14	52.5	0.0	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|336254552|ref|YP_004597659.1|	-	2.4e-10	40.6	0.2	9.3e-09	35.4	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|336254552|ref|YP_004597659.1|	-	6e-08	32.3	0.0	8.2e-08	31.9	0.0	1.2	1	0	0	1	1	1	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|336254552|ref|YP_004597659.1|	-	3.1e-06	26.8	0.0	0.01	15.3	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|336254552|ref|YP_004597659.1|	-	0.00015	21.2	0.0	0.00025	20.4	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|336254552|ref|YP_004597659.1|	-	0.00023	20.4	3.6	0.00058	19.1	1.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_25	PF13481.6	gi|336254552|ref|YP_004597659.1|	-	0.0058	16.2	0.0	0.013	15.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF1610	PF07754.11	gi|336254552|ref|YP_004597659.1|	-	0.017	15.1	0.1	0.063	13.2	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
CBP_BcsQ	PF06564.12	gi|336254552|ref|YP_004597659.1|	-	0.041	13.4	0.8	0.26	10.7	0.3	2.0	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
AAA_26	PF13500.6	gi|336254552|ref|YP_004597659.1|	-	0.05	13.4	0.0	4	7.2	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
CLP1_P	PF16575.5	gi|336254552|ref|YP_004597659.1|	-	0.11	12.2	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
APS_kinase	PF01583.20	gi|336254552|ref|YP_004597659.1|	-	0.15	11.9	0.0	0.41	10.5	0.0	1.7	2	0	0	2	2	2	0	Adenylylsulphate	kinase
zf-Mss51	PF13824.6	gi|336254553|ref|YP_004597660.1|	-	0.044	13.9	0.0	0.42	10.7	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.6	gi|336254553|ref|YP_004597660.1|	-	0.045	13.2	0.1	0.12	11.8	0.1	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|336254553|ref|YP_004597660.1|	-	0.055	13.4	0.3	0.17	11.8	0.1	2.0	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_10	PF10058.9	gi|336254553|ref|YP_004597660.1|	-	0.071	12.9	0.1	0.22	11.3	0.0	1.8	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Acetone_carb_G	PF08882.11	gi|336254553|ref|YP_004597660.1|	-	0.16	12.2	0.2	2.4	8.3	0.1	2.1	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
IF-2B	PF01008.17	gi|336254555|ref|YP_004597662.1|	-	1.1e-48	165.9	0.7	1.3e-48	165.7	0.7	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
ApoLp-III	PF07464.11	gi|336254555|ref|YP_004597662.1|	-	0.047	13.8	2.4	0.068	13.3	1.9	1.5	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
MerR-DNA-bind	PF09278.11	gi|336254555|ref|YP_004597662.1|	-	0.46	11.1	2.2	2.8	8.5	0.5	2.3	2	0	0	2	2	2	0	MerR,	DNA	binding
ThuA	PF06283.11	gi|336254556|ref|YP_004597663.1|	-	3e-32	112.6	0.1	3.6e-32	112.3	0.1	1.0	1	0	0	1	1	1	1	Trehalose	utilisation
GFO_IDH_MocA	PF01408.22	gi|336254557|ref|YP_004597664.1|	-	1.7e-28	99.8	0.9	3.8e-28	98.7	0.3	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336254557|ref|YP_004597664.1|	-	2.5e-08	33.9	0.0	4.8e-08	33.0	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_2	PF03446.15	gi|336254557|ref|YP_004597664.1|	-	0.00044	20.5	0.1	0.00099	19.3	0.1	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|336254557|ref|YP_004597664.1|	-	0.0017	18.9	0.0	0.0036	17.8	0.0	1.6	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_3	PF03447.16	gi|336254557|ref|YP_004597664.1|	-	0.0027	18.3	0.5	0.0046	17.6	0.5	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336254557|ref|YP_004597664.1|	-	0.0028	17.0	0.0	0.0057	16.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336254557|ref|YP_004597664.1|	-	0.021	14.4	0.1	0.041	13.4	0.1	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|336254557|ref|YP_004597664.1|	-	0.094	13.0	0.1	0.29	11.4	0.1	1.8	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
CoA_binding	PF02629.19	gi|336254557|ref|YP_004597664.1|	-	0.095	13.4	0.2	0.36	11.5	0.1	2.0	2	0	0	2	2	2	0	CoA	binding	domain
Proteasome	PF00227.26	gi|336254558|ref|YP_004597665.1|	-	1.1e-44	152.2	0.1	1.3e-44	152.0	0.1	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Ost4	PF10215.9	gi|336254559|ref|YP_004597666.1|	-	0.046	13.5	0.5	0.081	12.8	0.5	1.4	1	0	0	1	1	1	0	Oligosaccaryltransferase
DUF555	PF04475.12	gi|336254560|ref|YP_004597667.1|	-	5.9e-47	158.1	0.1	7e-47	157.9	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
CBS	PF00571.28	gi|336254561|ref|YP_004597668.1|	-	3.3e-22	78.7	0.1	7.2e-11	42.4	0.0	2.3	2	0	0	2	2	2	2	CBS	domain
HTH_31	PF13560.6	gi|336254561|ref|YP_004597668.1|	-	6.3e-12	45.7	2.5	1.2e-11	44.8	2.5	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|336254561|ref|YP_004597668.1|	-	8.3e-12	45.0	0.3	2e-11	43.8	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|336254561|ref|YP_004597668.1|	-	1.6e-07	31.3	0.0	3e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|336254561|ref|YP_004597668.1|	-	7.3e-05	22.6	1.1	0.00036	20.3	0.1	2.5	2	1	1	3	3	3	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|336254561|ref|YP_004597668.1|	-	0.0001	22.2	0.1	0.00031	20.6	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Pou	PF00157.17	gi|336254561|ref|YP_004597668.1|	-	0.0037	17.2	0.1	0.012	15.5	0.0	2.0	2	1	0	2	2	2	1	Pou	domain	-	N-terminal	to	homeobox	domain
HTH_26	PF13443.6	gi|336254561|ref|YP_004597668.1|	-	0.0046	17.4	0.1	0.01	16.3	0.0	1.7	2	0	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.6	gi|336254561|ref|YP_004597668.1|	-	0.053	13.1	0.2	1.2	8.8	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.16	gi|336254561|ref|YP_004597668.1|	-	0.099	12.2	0.1	1.3	8.6	0.1	2.7	3	0	0	3	3	3	0	Sigma-70,	region	4
DUF3618	PF12277.8	gi|336254561|ref|YP_004597668.1|	-	0.27	11.5	3.0	0.28	11.5	0.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
HTH_20	PF12840.7	gi|336254562|ref|YP_004597669.1|	-	2.3e-10	40.4	0.2	3.4e-10	39.8	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|336254562|ref|YP_004597669.1|	-	2e-06	27.6	0.0	2.8e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336254562|ref|YP_004597669.1|	-	0.013	15.2	0.0	0.023	14.5	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254562|ref|YP_004597669.1|	-	0.013	15.3	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|336254562|ref|YP_004597669.1|	-	0.036	14.4	0.0	0.058	13.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_5	PF01022.20	gi|336254562|ref|YP_004597669.1|	-	0.044	13.7	0.0	0.065	13.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF742	PF05331.11	gi|336254562|ref|YP_004597669.1|	-	0.082	12.7	0.1	0.12	12.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
CobA_CobO_BtuR	PF02572.15	gi|336254563|ref|YP_004597670.1|	-	5.6e-52	176.5	0.0	6.8e-52	176.2	0.0	1.1	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
CbiA	PF01656.23	gi|336254563|ref|YP_004597670.1|	-	0.06	13.4	0.0	0.077	13.1	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ABC_tran	PF00005.27	gi|336254564|ref|YP_004597671.1|	-	2.5e-23	83.1	0.0	4.6e-23	82.3	0.0	1.4	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336254564|ref|YP_004597671.1|	-	7.6e-11	42.4	0.1	4.1e-05	23.5	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|336254564|ref|YP_004597671.1|	-	0.00025	21.6	0.1	0.00039	21.0	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|336254564|ref|YP_004597671.1|	-	0.0016	18.2	0.0	1	9.0	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336254564|ref|YP_004597671.1|	-	0.0088	15.8	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|336254564|ref|YP_004597671.1|	-	0.023	14.4	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|336254564|ref|YP_004597671.1|	-	0.026	14.4	0.0	0.044	13.6	0.0	1.3	1	0	0	1	1	1	0	MukB	N-terminal
MeaB	PF03308.16	gi|336254564|ref|YP_004597671.1|	-	0.031	13.3	0.1	0.046	12.7	0.1	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
RsgA_GTPase	PF03193.16	gi|336254564|ref|YP_004597671.1|	-	0.034	14.0	0.0	0.38	10.6	0.0	2.1	2	0	0	2	2	2	0	RsgA	GTPase
AAA_27	PF13514.6	gi|336254564|ref|YP_004597671.1|	-	0.059	12.9	0.0	0.098	12.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|336254564|ref|YP_004597671.1|	-	0.066	11.9	0.1	6.4	5.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|336254564|ref|YP_004597671.1|	-	0.073	13.4	0.0	0.13	12.6	0.0	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336254564|ref|YP_004597671.1|	-	0.074	13.2	0.0	0.24	11.6	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|336254564|ref|YP_004597671.1|	-	0.091	12.2	0.0	8.2	5.8	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|336254564|ref|YP_004597671.1|	-	0.11	12.1	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_28	PF13521.6	gi|336254564|ref|YP_004597671.1|	-	0.15	12.3	0.1	0.48	10.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Sigma_M_inh	PF17453.2	gi|336254565|ref|YP_004597672.1|	-	0.76	10.3	6.1	0.23	11.9	1.9	2.3	2	0	0	2	2	2	0	Sigma-M	inhibitor
Iron_transport	PF10634.9	gi|336254566|ref|YP_004597673.1|	-	5.3e-06	26.7	0.0	1.8e-05	25.0	0.0	1.8	2	0	0	2	2	2	1	Fe2+	transport	protein
DUF2243	PF10002.9	gi|336254567|ref|YP_004597674.1|	-	8.2e-41	139.4	11.4	9.4e-41	139.2	11.4	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2243)
Peptidase_A8	PF01252.18	gi|336254567|ref|YP_004597674.1|	-	0.39	11.0	4.6	0.23	11.7	2.9	1.5	1	1	0	1	1	1	0	Signal	peptidase	(SPase)	II
GATase_3	PF07685.14	gi|336254568|ref|YP_004597675.1|	-	1.1e-38	132.8	0.0	2.1e-38	131.9	0.0	1.5	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|336254568|ref|YP_004597675.1|	-	3.1e-22	79.0	0.0	5.1e-22	78.3	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|336254568|ref|YP_004597675.1|	-	1.4e-18	67.4	0.0	9.5e-18	64.7	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
RHH_1	PF01402.21	gi|336254569|ref|YP_004597676.1|	-	0.08	12.9	0.0	0.18	11.8	0.0	1.6	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
MTH865	PF07747.11	gi|336254570|ref|YP_004597677.1|	-	2.3e-31	107.4	0.1	2.6e-31	107.2	0.1	1.0	1	0	0	1	1	1	1	MTH865-like	family
BAT	PF15915.5	gi|336254571|ref|YP_004597678.1|	-	4.4e-44	150.1	8.3	4.4e-44	150.1	8.3	3.8	4	1	1	5	5	4	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336254571|ref|YP_004597678.1|	-	1.1e-18	66.7	0.0	5.4e-18	64.5	0.0	2.2	2	0	0	2	2	2	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|336254571|ref|YP_004597678.1|	-	4.4e-14	52.7	0.7	4.4e-14	52.7	0.7	3.7	4	0	0	4	4	4	1	PAS	fold
GAF_2	PF13185.6	gi|336254571|ref|YP_004597678.1|	-	4.1e-13	49.8	1.0	4.1e-13	49.8	1.0	3.0	3	1	0	4	4	4	1	GAF	domain
H_kinase_N	PF12282.8	gi|336254571|ref|YP_004597678.1|	-	9.2e-05	22.4	0.8	0.0031	17.5	0.1	2.8	2	0	0	2	2	2	1	Signal	transduction	histidine	kinase
GAF	PF01590.26	gi|336254571|ref|YP_004597678.1|	-	0.00017	22.3	0.0	0.00058	20.5	0.0	2.1	1	1	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336254571|ref|YP_004597678.1|	-	0.00021	21.7	0.1	0.0005	20.4	0.1	1.6	1	0	0	1	1	1	1	GAF	domain
PAS_9	PF13426.7	gi|336254571|ref|YP_004597678.1|	-	0.00084	19.6	0.0	0.0027	17.9	0.0	2.0	1	0	0	1	1	1	1	PAS	domain
Sigma70_r4	PF04545.16	gi|336254571|ref|YP_004597678.1|	-	0.0015	18.0	0.0	0.0082	15.6	0.0	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|336254571|ref|YP_004597678.1|	-	0.0017	18.0	0.0	0.006	16.2	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
Autoind_bind	PF03472.15	gi|336254571|ref|YP_004597678.1|	-	0.066	12.7	0.0	0.19	11.2	0.0	1.8	1	0	0	1	1	1	0	Autoinducer	binding	domain
HTH_5	PF01022.20	gi|336254571|ref|YP_004597678.1|	-	0.15	11.9	0.3	0.95	9.4	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
ThiI	PF02568.14	gi|336254572|ref|YP_004597679.1|	-	2e-43	148.3	0.0	3e-43	147.7	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|336254572|ref|YP_004597679.1|	-	6.4e-17	62.0	0.0	1.3e-16	61.0	0.0	1.5	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.13	gi|336254572|ref|YP_004597679.1|	-	2.3e-05	24.0	0.0	0.23	10.9	0.0	2.5	2	1	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|336254572|ref|YP_004597679.1|	-	0.00058	18.8	0.0	0.00081	18.3	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|336254572|ref|YP_004597679.1|	-	0.049	13.4	0.1	0.59	9.9	0.1	2.3	1	1	0	1	1	1	0	PP-loop	family
MFS_1	PF07690.16	gi|336254573|ref|YP_004597680.1|	-	6e-44	150.4	54.4	3.1e-26	92.1	27.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|336254573|ref|YP_004597680.1|	-	0.0019	17.1	19.5	0.022	13.7	0.1	3.3	1	1	2	3	3	3	3	MFS_1	like	family
OATP	PF03137.20	gi|336254573|ref|YP_004597680.1|	-	0.0027	16.1	2.2	0.003	15.9	0.7	1.7	1	1	1	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
AdoMet_Synthase	PF01941.19	gi|336254574|ref|YP_004597681.1|	-	2.1e-173	576.7	6.9	2.4e-173	576.5	6.9	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
S-AdoMet_synt_N	PF00438.20	gi|336254574|ref|YP_004597681.1|	-	0.0055	17.4	1.0	0.015	16.0	0.0	2.3	3	0	0	3	3	3	1	S-adenosylmethionine	synthetase,	N-terminal	domain
DUF961	PF06125.11	gi|336254574|ref|YP_004597681.1|	-	0.011	16.0	0.3	0.34	11.3	0.1	2.4	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF961)
Asp23	PF03780.13	gi|336254574|ref|YP_004597681.1|	-	0.73	10.3	7.1	4.7	7.7	1.8	3.4	2	1	0	2	2	2	0	Asp23	family,	cell	envelope-related	function
CYTH	PF01928.21	gi|336254575|ref|YP_004597682.1|	-	3e-34	118.5	8.4	1.2e-33	116.5	8.4	1.8	1	1	0	1	1	1	1	CYTH	domain
FKBP_C	PF00254.28	gi|336254576|ref|YP_004597683.1|	-	1.6e-07	31.5	0.3	4.4e-07	30.1	0.2	1.8	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
ScdA_N	PF04405.14	gi|336254576|ref|YP_004597683.1|	-	0.06	13.0	0.2	0.16	11.7	0.2	1.7	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
ATPase	PF06745.13	gi|336254577|ref|YP_004597684.1|	-	3.5e-07	29.8	0.0	0.0004	19.8	0.0	2.2	2	1	0	2	2	2	2	KaiC
OTCace_N	PF02729.21	gi|336254578|ref|YP_004597685.1|	-	1.6e-45	154.8	0.0	7.6e-45	152.6	0.0	2.0	2	1	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|336254578|ref|YP_004597685.1|	-	1.8e-31	109.4	0.0	2.4e-31	108.9	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
DUF2586	PF10758.9	gi|336254578|ref|YP_004597685.1|	-	0.2	10.8	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2586)
PyrI	PF01948.18	gi|336254579|ref|YP_004597686.1|	-	6.4e-33	112.9	0.5	8.1e-33	112.5	0.5	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|336254579|ref|YP_004597686.1|	-	5.4e-12	45.4	0.2	1.1e-11	44.5	0.2	1.5	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
HTH_10	PF04967.12	gi|336254584|ref|YP_004597691.1|	-	2.6e-18	65.6	0.1	4.4e-18	64.8	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336254584|ref|YP_004597691.1|	-	7.7e-12	45.3	0.8	1.3e-11	44.6	0.8	1.5	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|336254584|ref|YP_004597691.1|	-	0.00032	20.5	0.3	0.0012	18.6	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336254584|ref|YP_004597691.1|	-	0.0013	18.3	0.0	0.0024	17.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336254584|ref|YP_004597691.1|	-	0.021	14.6	0.1	0.045	13.6	0.1	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Phage_CI_repr	PF07022.13	gi|336254584|ref|YP_004597691.1|	-	0.026	14.6	0.0	0.079	13.1	0.0	1.8	2	0	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
UPF0122	PF04297.14	gi|336254584|ref|YP_004597691.1|	-	0.033	14.4	0.0	0.055	13.7	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_psq	PF05225.16	gi|336254584|ref|YP_004597691.1|	-	0.035	13.8	0.0	0.087	12.6	0.0	1.7	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
Sigma70_r4	PF04545.16	gi|336254584|ref|YP_004597691.1|	-	0.036	13.6	0.1	0.069	12.7	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
BPD_transp_1	PF00528.22	gi|336254585|ref|YP_004597692.1|	-	6.4e-16	58.6	13.7	6.4e-16	58.6	13.7	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_11	PF13531.6	gi|336254586|ref|YP_004597693.1|	-	1.5e-28	100.1	0.2	2.1e-28	99.6	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336254586|ref|YP_004597693.1|	-	1.6e-05	25.0	0.0	0.00035	20.6	0.0	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
MobB	PF03205.14	gi|336254587|ref|YP_004597694.1|	-	5.5e-23	81.3	0.0	1.9e-17	63.4	0.0	2.1	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.6	gi|336254587|ref|YP_004597694.1|	-	0.00014	22.3	0.1	0.0044	17.4	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
GTP_EFTU	PF00009.27	gi|336254587|ref|YP_004597694.1|	-	0.00065	19.3	0.0	0.0012	18.4	0.0	1.5	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
SRPRB	PF09439.10	gi|336254587|ref|YP_004597694.1|	-	0.0045	16.5	0.0	0.0066	15.9	0.0	1.3	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
cobW	PF02492.19	gi|336254587|ref|YP_004597694.1|	-	0.0049	16.5	0.0	0.021	14.4	0.0	1.8	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_18	PF13238.6	gi|336254587|ref|YP_004597694.1|	-	0.005	17.4	0.0	0.025	15.1	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|336254587|ref|YP_004597694.1|	-	0.0098	15.6	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|336254587|ref|YP_004597694.1|	-	0.036	14.0	0.0	0.098	12.6	0.0	1.7	2	1	0	2	2	2	0	RsgA	GTPase
AAA_33	PF13671.6	gi|336254587|ref|YP_004597694.1|	-	0.045	13.9	0.0	0.11	12.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|336254587|ref|YP_004597694.1|	-	0.091	13.0	0.0	0.15	12.4	0.0	1.5	1	1	1	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|336254587|ref|YP_004597694.1|	-	0.1	12.3	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336254587|ref|YP_004597694.1|	-	0.1	12.3	0.0	0.21	11.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|336254587|ref|YP_004597694.1|	-	0.1	12.7	0.0	0.24	11.5	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|336254587|ref|YP_004597694.1|	-	0.11	12.7	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
T2SSE	PF00437.20	gi|336254587|ref|YP_004597694.1|	-	0.12	11.4	0.0	0.17	10.9	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|336254587|ref|YP_004597694.1|	-	0.13	12.2	0.0	0.26	11.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
TniB	PF05621.11	gi|336254587|ref|YP_004597694.1|	-	0.14	11.6	0.0	0.18	11.2	0.0	1.2	1	0	0	1	1	1	0	Bacterial	TniB	protein
AAA_14	PF13173.6	gi|336254587|ref|YP_004597694.1|	-	0.14	12.2	0.0	0.25	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|336254587|ref|YP_004597694.1|	-	0.17	11.8	0.0	0.29	11.0	0.0	1.4	2	0	0	2	2	1	0	ATPase	domain	predominantly	from	Archaea
AAA_5	PF07728.14	gi|336254587|ref|YP_004597694.1|	-	0.17	11.9	0.0	0.26	11.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|336254587|ref|YP_004597694.1|	-	0.17	12.3	0.0	0.24	11.8	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
PRK	PF00485.18	gi|336254587|ref|YP_004597694.1|	-	0.17	11.6	0.0	0.26	11.0	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Nitrate_red_del	PF02613.15	gi|336254588|ref|YP_004597695.1|	-	5.9e-20	71.7	0.2	1.4e-19	70.4	0.3	1.6	1	1	1	2	2	2	1	Nitrate	reductase	delta	subunit
Fer4_11	PF13247.6	gi|336254589|ref|YP_004597696.1|	-	6.9e-32	109.6	7.0	6.9e-32	109.6	7.0	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336254589|ref|YP_004597696.1|	-	2e-07	31.5	18.3	8.6e-05	23.1	7.0	3.5	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336254589|ref|YP_004597696.1|	-	1.5e-05	25.0	21.2	0.0018	18.3	7.4	3.3	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336254589|ref|YP_004597696.1|	-	1.5e-05	25.0	16.7	0.016	15.4	5.1	3.4	2	1	2	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336254589|ref|YP_004597696.1|	-	0.00041	20.3	23.4	0.013	15.6	1.2	4.6	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|336254589|ref|YP_004597696.1|	-	0.00066	19.4	18.9	0.036	13.9	0.9	4.7	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336254589|ref|YP_004597696.1|	-	0.00098	19.2	20.2	0.019	15.1	0.7	3.3	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|336254589|ref|YP_004597696.1|	-	0.0014	19.1	8.4	0.061	13.9	0.2	3.7	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_6	PF12837.7	gi|336254589|ref|YP_004597696.1|	-	0.0076	16.3	25.4	0.27	11.4	0.7	4.6	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336254589|ref|YP_004597696.1|	-	0.31	12.0	16.5	4.9	8.2	0.7	3.7	3	0	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|336254589|ref|YP_004597696.1|	-	0.4	11.2	0.0	0.4	11.2	0.0	3.9	3	2	0	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336254589|ref|YP_004597696.1|	-	0.55	10.8	19.4	0.75	10.4	0.1	3.9	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|336254589|ref|YP_004597696.1|	-	1.8	8.8	9.3	31	4.8	0.0	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_19	PF06902.11	gi|336254589|ref|YP_004597696.1|	-	2	8.6	8.4	0.056	13.5	1.3	2.1	2	0	0	2	2	1	0	Divergent	4Fe-4S	mono-cluster
Molybdopterin	PF00384.22	gi|336254590|ref|YP_004597697.1|	-	1.9e-34	119.4	0.1	4e-30	105.1	0.0	2.2	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|336254590|ref|YP_004597697.1|	-	0.00016	21.7	0.3	0.00087	19.3	0.0	2.4	3	0	0	3	3	3	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|336254590|ref|YP_004597697.1|	-	0.0062	16.5	0.1	0.017	15.1	0.1	1.8	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
ParA	PF10609.9	gi|336254591|ref|YP_004597698.1|	-	4.1e-51	173.8	0.0	5.3e-51	173.4	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|336254591|ref|YP_004597698.1|	-	5.5e-11	42.6	0.0	9.9e-11	41.8	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|336254591|ref|YP_004597698.1|	-	6.7e-07	29.4	1.0	1.9e-06	27.9	0.4	1.8	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|336254591|ref|YP_004597698.1|	-	0.00036	19.9	0.3	0.00057	19.2	0.3	1.2	1	0	0	1	1	1	1	ATPase	MipZ
VirC1	PF07015.11	gi|336254591|ref|YP_004597698.1|	-	0.0025	17.1	0.1	0.0064	15.8	0.1	1.6	2	0	0	2	2	2	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|336254591|ref|YP_004597698.1|	-	0.0029	16.9	0.8	0.0044	16.2	0.8	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
FeS_assembly_P	PF01883.19	gi|336254591|ref|YP_004597698.1|	-	0.0054	16.9	1.4	0.0054	16.9	1.4	2.9	3	0	0	3	3	3	1	Iron-sulfur	cluster	assembly	protein
CBP_BcsQ	PF06564.12	gi|336254591|ref|YP_004597698.1|	-	0.0063	16.0	0.4	0.013	15.0	0.2	1.5	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
LpxK	PF02606.14	gi|336254591|ref|YP_004597698.1|	-	0.012	14.7	0.2	0.018	14.2	0.2	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_26	PF13500.6	gi|336254591|ref|YP_004597698.1|	-	0.024	14.4	0.3	0.21	11.4	0.2	2.2	2	0	0	2	2	2	0	AAA	domain
Polyketide_cyc2	PF10604.9	gi|336254592|ref|YP_004597699.1|	-	0.015	15.6	0.9	0.02	15.2	0.9	1.2	1	0	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
UbiA	PF01040.18	gi|336254593|ref|YP_004597700.1|	-	6.9e-29	100.9	19.8	9.6e-29	100.4	19.8	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF3742	PF12553.8	gi|336254593|ref|YP_004597700.1|	-	0.42	10.7	6.1	3.7	7.7	0.8	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3742)
HTH_20	PF12840.7	gi|336254594|ref|YP_004597701.1|	-	7.4e-05	22.7	4.2	0.00012	22.1	2.3	2.3	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254594|ref|YP_004597701.1|	-	0.075	12.9	0.1	12	5.9	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
YyzF	PF14116.6	gi|336254594|ref|YP_004597701.1|	-	7.1	6.7	6.0	1.3	9.1	1.2	2.2	2	0	0	2	2	2	0	YyzF-like	protein
HalOD1	PF18545.1	gi|336254595|ref|YP_004597702.1|	-	1.8e-18	66.5	0.2	2.5e-18	66.1	0.2	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
NQRA	PF05896.11	gi|336254596|ref|YP_004597703.1|	-	0.13	11.7	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
TrkA_N	PF02254.18	gi|336254597|ref|YP_004597704.1|	-	1.2e-20	73.9	1.8	2.2e-20	73.1	0.8	2.0	2	0	0	2	2	1	1	TrkA-N	domain
DHH	PF01368.20	gi|336254597|ref|YP_004597704.1|	-	1.2e-13	51.1	2.9	3.8e-12	46.3	1.2	2.4	2	0	0	2	2	2	1	DHH	family
F420_oxidored	PF03807.17	gi|336254597|ref|YP_004597704.1|	-	2.2e-09	37.8	0.3	8.2e-09	35.9	0.1	2.1	2	0	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|336254597|ref|YP_004597704.1|	-	3.8e-08	33.6	0.1	1.5e-07	31.8	0.1	2.1	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|336254597|ref|YP_004597704.1|	-	4.3e-07	29.7	0.0	1.2e-06	28.2	0.0	1.8	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
DHHA1	PF02272.19	gi|336254597|ref|YP_004597704.1|	-	1e-05	26.0	0.2	5e-05	23.7	0.0	2.2	2	1	0	2	2	2	1	DHHA1	domain
NAD_binding_2	PF03446.15	gi|336254597|ref|YP_004597704.1|	-	4.5e-05	23.7	0.0	9.4e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_7	PF13241.6	gi|336254597|ref|YP_004597704.1|	-	6.2e-05	23.4	0.2	0.00022	21.6	0.2	2.0	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|336254597|ref|YP_004597704.1|	-	6.2e-05	23.1	0.0	0.00018	21.6	0.0	1.7	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_10	PF13460.6	gi|336254597|ref|YP_004597704.1|	-	0.0001	22.2	1.7	0.0001	22.2	1.7	1.8	2	1	0	2	2	2	1	NAD(P)H-binding
UDPG_MGDP_dh_N	PF03721.14	gi|336254597|ref|YP_004597704.1|	-	0.00014	21.5	0.0	0.00036	20.2	0.0	1.7	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
IlvN	PF07991.12	gi|336254597|ref|YP_004597704.1|	-	0.00015	21.4	0.2	0.0003	20.4	0.2	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Epimerase	PF01370.21	gi|336254597|ref|YP_004597704.1|	-	0.0002	20.9	0.2	0.00047	19.7	0.1	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FAD_binding_3	PF01494.19	gi|336254597|ref|YP_004597704.1|	-	0.00052	19.4	0.0	0.0012	18.2	0.0	1.5	1	0	0	1	1	1	1	FAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336254597|ref|YP_004597704.1|	-	0.0025	17.2	0.0	0.0072	15.7	0.0	1.7	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|336254597|ref|YP_004597704.1|	-	0.0058	16.5	0.0	0.014	15.3	0.0	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336254597|ref|YP_004597704.1|	-	0.0063	16.5	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
AlaDh_PNT_C	PF01262.21	gi|336254597|ref|YP_004597704.1|	-	0.0075	15.6	0.2	0.02	14.2	0.2	1.7	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
adh_short	PF00106.25	gi|336254597|ref|YP_004597704.1|	-	0.01	15.3	1.0	0.034	13.6	0.1	2.4	3	1	1	4	4	4	0	short	chain	dehydrogenase
XdhC_C	PF13478.6	gi|336254597|ref|YP_004597704.1|	-	0.03	14.8	0.4	0.11	13.0	0.0	2.2	2	1	0	2	2	2	0	XdhC	Rossmann	domain
adh_short_C2	PF13561.6	gi|336254597|ref|YP_004597704.1|	-	0.034	13.7	5.0	0.041	13.4	0.4	2.9	3	0	0	3	3	3	0	Enoyl-(Acyl	carrier	protein)	reductase
DAO	PF01266.24	gi|336254597|ref|YP_004597704.1|	-	0.04	13.5	0.7	0.089	12.3	0.1	1.8	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|336254597|ref|YP_004597704.1|	-	0.15	12.3	0.0	0.39	11.0	0.0	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
UPF0126	PF03458.13	gi|336254598|ref|YP_004597705.1|	-	4.3e-33	113.0	25.9	1.3e-18	66.6	8.3	2.6	2	1	0	2	2	2	2	UPF0126	domain
PRC	PF05239.16	gi|336254599|ref|YP_004597706.1|	-	4.8e-11	42.6	1.9	6.3e-11	42.2	1.9	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
RcnB	PF11776.8	gi|336254599|ref|YP_004597706.1|	-	0.014	15.5	0.4	0.026	14.6	0.4	1.4	1	0	0	1	1	1	0	Nickel/cobalt	transporter	regulator
AAA_26	PF13500.6	gi|336254600|ref|YP_004597707.1|	-	7.4e-37	127.1	0.0	1.3e-36	126.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DRTGG	PF07085.12	gi|336254600|ref|YP_004597707.1|	-	3.7e-29	100.6	0.1	1.3e-28	98.8	0.0	1.9	2	0	0	2	2	2	1	DRTGG	domain
CbiA	PF01656.23	gi|336254600|ref|YP_004597707.1|	-	0.00091	19.3	0.0	0.003	17.6	0.0	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ATP-grasp_5	PF13549.6	gi|336254601|ref|YP_004597708.1|	-	6.6e-74	248.1	0.1	1.5e-73	246.9	0.1	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|336254601|ref|YP_004597708.1|	-	3.4e-54	182.4	1.2	2.2e-52	176.5	0.1	2.7	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|336254601|ref|YP_004597708.1|	-	2.1e-24	86.2	0.8	2.7e-23	82.7	0.1	3.1	3	0	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|336254601|ref|YP_004597708.1|	-	3.3e-12	46.9	0.1	1.3e-11	45.0	0.1	2.1	1	0	0	1	1	1	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|336254601|ref|YP_004597708.1|	-	0.0002	21.0	0.0	0.00045	19.8	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
Lipase_GDSL_2	PF13472.6	gi|336254601|ref|YP_004597708.1|	-	0.045	14.2	0.3	17	5.7	0.0	3.9	2	2	0	4	4	4	0	GDSL-like	Lipase/Acylhydrolase	family
HRDC	PF00570.23	gi|336254601|ref|YP_004597708.1|	-	0.065	13.2	0.0	0.17	11.9	0.0	1.7	1	0	0	1	1	1	0	HRDC	domain
ABC-3	PF00950.17	gi|336254602|ref|YP_004597709.1|	-	7.4e-56	189.5	33.4	7.4e-56	189.5	33.4	1.5	2	0	0	2	2	2	1	ABC	3	transport	family
FecCD	PF01032.18	gi|336254602|ref|YP_004597709.1|	-	5.3e-06	25.6	33.4	5.3e-06	25.6	33.4	1.9	1	1	0	2	2	2	1	FecCD	transport	family
DUF2407_C	PF13373.6	gi|336254602|ref|YP_004597709.1|	-	5.1	7.3	5.7	0.85	9.8	0.9	2.1	2	0	0	2	2	2	0	DUF2407	C-terminal	domain
ABC_tran	PF00005.27	gi|336254603|ref|YP_004597710.1|	-	4.2e-31	108.3	0.0	5.7e-31	107.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336254603|ref|YP_004597710.1|	-	1.1e-12	48.5	0.2	1.2e-05	25.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336254603|ref|YP_004597710.1|	-	0.00025	20.6	0.1	0.15	11.5	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336254603|ref|YP_004597710.1|	-	0.00044	20.7	0.5	0.00093	19.6	0.5	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336254603|ref|YP_004597710.1|	-	0.00082	19.7	0.5	0.0084	16.4	0.5	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336254603|ref|YP_004597710.1|	-	0.0011	18.7	0.2	0.0021	17.8	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Peripla_BP_4	PF13407.6	gi|336254603|ref|YP_004597710.1|	-	0.0034	17.0	0.0	0.0056	16.3	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
AAA_23	PF13476.6	gi|336254603|ref|YP_004597710.1|	-	0.0038	17.7	0.0	0.0054	17.3	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|336254603|ref|YP_004597710.1|	-	0.005	16.6	0.0	0.017	14.9	0.0	1.6	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336254603|ref|YP_004597710.1|	-	0.011	16.0	0.1	0.051	13.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|336254603|ref|YP_004597710.1|	-	0.03	14.2	0.1	0.098	12.6	0.0	1.8	2	0	0	2	2	2	0	NTPase
MobB	PF03205.14	gi|336254603|ref|YP_004597710.1|	-	0.053	13.4	0.0	0.28	11.1	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.21	gi|336254603|ref|YP_004597710.1|	-	0.055	12.8	0.0	0.1	12.0	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
SbcCD_C	PF13558.6	gi|336254603|ref|YP_004597710.1|	-	0.085	13.1	2.0	0.62	10.3	0.4	2.5	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.14	gi|336254603|ref|YP_004597710.1|	-	0.086	12.8	0.1	0.21	11.6	0.1	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
cobW	PF02492.19	gi|336254603|ref|YP_004597710.1|	-	0.15	11.6	0.7	0.29	10.7	0.2	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.29	gi|336254603|ref|YP_004597710.1|	-	0.16	12.4	0.0	0.95	9.9	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|336254603|ref|YP_004597710.1|	-	0.25	10.9	5.8	2.8	7.5	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
ZnuA	PF01297.17	gi|336254604|ref|YP_004597711.1|	-	1.1e-41	143.0	4.9	1.4e-41	142.7	4.9	1.1	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
TAT_signal	PF10518.9	gi|336254604|ref|YP_004597711.1|	-	0.048	13.5	3.2	0.1	12.5	3.2	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Zip	PF02535.22	gi|336254604|ref|YP_004597711.1|	-	0.15	11.3	15.7	0.21	10.8	15.7	1.1	1	0	0	1	1	1	0	ZIP	Zinc	transporter
SAPS	PF04499.15	gi|336254604|ref|YP_004597711.1|	-	0.17	10.6	5.1	0.25	10.1	5.1	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
BUD22	PF09073.10	gi|336254604|ref|YP_004597711.1|	-	1	8.6	14.7	1.4	8.2	14.7	1.1	1	0	0	1	1	1	0	BUD22
CDC45	PF02724.14	gi|336254604|ref|YP_004597711.1|	-	1.4	7.1	15.1	1.7	6.8	15.1	1.1	1	0	0	1	1	1	0	CDC45-like	protein
SDA1	PF05285.12	gi|336254604|ref|YP_004597711.1|	-	2.3	7.6	22.2	3.1	7.1	22.2	1.1	1	0	0	1	1	1	0	SDA1
Virul_fac_BrkB	PF03631.15	gi|336254605|ref|YP_004597712.1|	-	2.2e-45	155.3	25.1	2.7e-45	155.0	25.1	1.1	1	0	0	1	1	1	1	Virulence	factor	BrkB
CENP-F_leu_zip	PF10473.9	gi|336254605|ref|YP_004597712.1|	-	4.6e-06	26.7	4.7	7.4e-06	26.0	4.7	1.2	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ERM	PF00769.19	gi|336254605|ref|YP_004597712.1|	-	0.00013	21.8	8.0	0.0002	21.2	8.0	1.1	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
ZapB	PF06005.12	gi|336254605|ref|YP_004597712.1|	-	0.00016	22.0	7.1	0.00016	22.0	7.1	2.2	1	1	1	2	2	2	1	Cell	division	protein	ZapB
Filament	PF00038.21	gi|336254605|ref|YP_004597712.1|	-	0.00078	19.1	6.3	0.001	18.7	6.3	1.1	1	0	0	1	1	1	1	Intermediate	filament	protein
bZIP_1	PF00170.21	gi|336254605|ref|YP_004597712.1|	-	0.00094	19.2	5.7	0.0016	18.5	5.7	1.4	1	0	0	1	1	1	1	bZIP	transcription	factor
YabA	PF06156.13	gi|336254605|ref|YP_004597712.1|	-	0.002	18.7	3.1	0.0041	17.7	2.8	1.7	1	1	1	2	2	2	1	Initiation	control	protein	YabA
Enkurin	PF13864.6	gi|336254605|ref|YP_004597712.1|	-	0.0052	17.2	0.9	0.0052	17.2	0.9	2.1	1	1	1	2	2	2	1	Calmodulin-binding
ADIP	PF11559.8	gi|336254605|ref|YP_004597712.1|	-	0.016	15.3	8.6	0.023	14.8	8.6	1.2	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Rootletin	PF15035.6	gi|336254605|ref|YP_004597712.1|	-	0.019	15.0	8.7	0.027	14.5	8.7	1.1	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
TSC22	PF01166.18	gi|336254605|ref|YP_004597712.1|	-	0.029	14.7	2.4	0.055	13.8	2.4	1.4	1	0	0	1	1	1	0	TSC-22/dip/bun	family
EzrA	PF06160.12	gi|336254605|ref|YP_004597712.1|	-	0.041	12.1	1.3	0.055	11.6	1.3	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
GAS	PF13851.6	gi|336254605|ref|YP_004597712.1|	-	0.086	12.2	7.9	0.25	10.7	7.9	1.6	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
JIP_LZII	PF16471.5	gi|336254605|ref|YP_004597712.1|	-	0.093	12.9	0.4	0.093	12.9	0.4	2.3	1	1	1	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
FlaC_arch	PF05377.11	gi|336254605|ref|YP_004597712.1|	-	0.11	12.8	0.5	0.81	10.1	0.3	2.1	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF2053	PF09767.9	gi|336254605|ref|YP_004597712.1|	-	0.13	12.4	0.8	0.28	11.3	0.1	1.7	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2053)
Cnn_1N	PF07989.11	gi|336254605|ref|YP_004597712.1|	-	0.16	12.2	6.3	0.59	10.3	5.0	2.0	1	1	1	2	2	2	0	Centrosomin	N-terminal	motif	1
KASH_CCD	PF14662.6	gi|336254605|ref|YP_004597712.1|	-	0.16	11.8	6.3	0.11	12.3	3.0	1.9	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
DUF1664	PF07889.12	gi|336254605|ref|YP_004597712.1|	-	0.17	12.0	0.4	0.33	11.0	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Fungal_TACC	PF12709.7	gi|336254605|ref|YP_004597712.1|	-	0.22	12.0	3.1	2.8	8.4	0.6	2.2	2	0	0	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
Perilipin	PF03036.16	gi|336254605|ref|YP_004597712.1|	-	0.24	10.4	1.0	0.34	9.9	1.0	1.1	1	0	0	1	1	1	0	Perilipin	family
CortBP2	PF09727.9	gi|336254605|ref|YP_004597712.1|	-	0.86	9.5	12.9	2.5	7.9	12.9	1.6	1	1	0	1	1	1	0	Cortactin-binding	protein-2
HALZ	PF02183.18	gi|336254605|ref|YP_004597712.1|	-	0.92	9.8	4.7	0.46	10.7	1.0	2.1	2	0	0	2	2	2	0	Homeobox	associated	leucine	zipper
UPF0242	PF06785.11	gi|336254605|ref|YP_004597712.1|	-	1.1	9.3	7.4	4	7.5	7.5	2.0	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
TPR_MLP1_2	PF07926.12	gi|336254605|ref|YP_004597712.1|	-	1.6	8.8	11.0	1	9.4	7.1	2.0	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
APG6_N	PF17675.1	gi|336254605|ref|YP_004597712.1|	-	1.8	9.1	17.2	1.4	9.4	14.2	1.9	1	1	1	2	2	2	0	Apg6	coiled-coil	region
CENP-H	PF05837.12	gi|336254605|ref|YP_004597712.1|	-	2.9	8.3	7.8	4.2	7.8	5.9	1.7	1	1	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DivIC	PF04977.15	gi|336254605|ref|YP_004597712.1|	-	3.9	7.3	13.1	1.7	8.5	4.2	2.7	2	1	1	3	3	2	0	Septum	formation	initiator
Cep57_CLD_2	PF14197.6	gi|336254605|ref|YP_004597712.1|	-	5.8	7.1	16.2	8.4	6.6	5.5	2.5	1	1	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
PRKG1_interact	PF15898.5	gi|336254605|ref|YP_004597712.1|	-	6.9	7.6	11.3	10	7.1	2.0	2.2	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
Atg14	PF10186.9	gi|336254605|ref|YP_004597712.1|	-	9.1	5.3	7.3	13	4.7	7.3	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
betaPIX_CC	PF16523.5	gi|336254605|ref|YP_004597712.1|	-	9.5	6.1	8.1	16	5.4	0.6	2.7	2	1	1	3	3	2	0	betaPIX	coiled	coil
Ferritin	PF00210.24	gi|336254606|ref|YP_004597713.1|	-	1.2e-32	112.8	3.0	1.6e-32	112.4	3.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.10	gi|336254606|ref|YP_004597713.1|	-	0.0068	16.7	0.5	3.2	8.2	0.0	2.7	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF2383)
Macro	PF01661.21	gi|336254608|ref|YP_004597715.1|	-	4.6e-29	100.9	0.0	6.8e-29	100.3	0.0	1.3	1	0	0	1	1	1	1	Macro	domain
CytB6-F_Fe-S	PF08802.10	gi|336254609|ref|YP_004597716.1|	-	0.061	13.4	0.2	0.11	12.5	0.2	1.4	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	Fe-S	subunit
TAT_signal	PF10518.9	gi|336254609|ref|YP_004597716.1|	-	0.067	13.1	0.9	0.067	13.1	0.9	1.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
AIRS_C	PF02769.22	gi|336254610|ref|YP_004597717.1|	-	6e-22	78.4	0.2	1.3e-21	77.4	0.0	1.6	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|336254610|ref|YP_004597717.1|	-	2.5e-13	50.5	0.8	4.8e-13	49.6	0.8	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
YdjM	PF04307.14	gi|336254611|ref|YP_004597718.1|	-	6e-06	25.7	20.0	4.3e-05	22.9	16.2	2.7	2	1	0	2	2	2	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Acetyltransf_1	PF00583.25	gi|336254612|ref|YP_004597719.1|	-	1.1e-12	48.2	0.0	1.4e-12	47.9	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336254612|ref|YP_004597719.1|	-	5e-09	36.5	0.0	7.9e-09	35.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336254612|ref|YP_004597719.1|	-	2.5e-07	31.4	0.0	3.5e-07	31.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336254612|ref|YP_004597719.1|	-	3.6e-06	26.9	0.0	1.2e-05	25.2	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336254612|ref|YP_004597719.1|	-	6.1e-06	26.1	0.0	1e-05	25.4	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|336254612|ref|YP_004597719.1|	-	0.00034	20.7	0.0	0.00047	20.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|336254612|ref|YP_004597719.1|	-	0.0035	16.9	0.0	0.0042	16.6	0.0	1.3	1	1	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_CG	PF14542.6	gi|336254612|ref|YP_004597719.1|	-	0.0052	16.9	0.0	0.0096	16.0	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_4	PF13420.7	gi|336254612|ref|YP_004597719.1|	-	0.0076	16.4	0.0	0.011	15.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Big_3_4	PF13754.6	gi|336254612|ref|YP_004597719.1|	-	0.19	11.5	0.0	0.29	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function
CDP-OH_P_transf	PF01066.21	gi|336254613|ref|YP_004597720.1|	-	1.7e-06	28.7	1.4	1.7e-06	28.7	1.4	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Ketoacyl-synt_C	PF02801.22	gi|336254613|ref|YP_004597720.1|	-	0.16	12.0	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Beta-ketoacyl	synthase,	C-terminal	domain
PHP_C	PF13263.6	gi|336254614|ref|YP_004597721.1|	-	2.1e-15	56.2	1.4	4.4e-15	55.2	1.4	1.6	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.19	gi|336254614|ref|YP_004597721.1|	-	1e-07	32.4	0.0	1.9e-07	31.6	0.0	1.5	1	1	0	1	1	1	1	PHP	domain
Peptidase_M50	PF02163.22	gi|336254615|ref|YP_004597722.1|	-	5e-06	26.0	15.8	0.0032	16.8	0.8	3.2	1	1	1	2	2	2	2	Peptidase	family	M50
DUF3021	PF11457.8	gi|336254615|ref|YP_004597722.1|	-	0.93	9.8	6.6	0.87	9.9	5.5	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
TraB	PF01963.17	gi|336254616|ref|YP_004597723.1|	-	3.6e-27	95.9	0.0	1.5e-16	61.1	0.0	2.1	2	0	0	2	2	2	2	TraB	family
RRM_4	PF10598.9	gi|336254616|ref|YP_004597723.1|	-	0.031	14.6	0.5	0.086	13.2	0.5	1.7	1	0	0	1	1	1	0	RNA	recognition	motif	of	the	spliceosomal	PrP8
PAP2	PF01569.21	gi|336254616|ref|YP_004597723.1|	-	0.6	9.9	0.0	0.6	9.9	0.0	3.1	3	1	0	3	3	3	0	PAP2	superfamily
4HBT	PF03061.22	gi|336254617|ref|YP_004597724.1|	-	2.9e-15	56.4	0.3	4.1e-15	55.9	0.3	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
Peptidase_S66	PF02016.15	gi|336254618|ref|YP_004597725.1|	-	1e-25	90.2	0.0	1.4e-25	89.7	0.0	1.2	1	0	0	1	1	1	1	LD-carboxypeptidase	N-terminal	domain
Peptidase_S66C	PF17676.1	gi|336254618|ref|YP_004597725.1|	-	3.4e-24	85.7	0.0	5.3e-24	85.1	0.0	1.3	1	0	0	1	1	1	1	LD-carboxypeptidase	C-terminal	domain
Gly-zipper_YMGG	PF13441.6	gi|336254619|ref|YP_004597726.1|	-	3.2e-07	30.0	15.1	4.3e-07	29.6	15.1	1.2	1	0	0	1	1	1	1	YMGG-like	Gly-zipper
Rick_17kDa_Anti	PF05433.15	gi|336254619|ref|YP_004597726.1|	-	5.6e-06	26.1	15.0	8.1e-06	25.6	15.0	1.3	1	0	0	1	1	1	1	Glycine	zipper	2TM	domain
Gly-zipper_Omp	PF13488.6	gi|336254619|ref|YP_004597726.1|	-	0.0012	18.8	33.9	0.011	15.7	6.1	2.0	1	1	1	2	2	2	2	Glycine	zipper
DUF456	PF04306.13	gi|336254619|ref|YP_004597726.1|	-	0.0064	16.8	1.1	0.0067	16.7	1.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
DUF3482	PF11981.8	gi|336254619|ref|YP_004597726.1|	-	0.066	12.6	7.5	0.075	12.4	7.5	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
TraT	PF05818.12	gi|336254619|ref|YP_004597726.1|	-	0.095	12.4	3.6	0.1	12.3	3.6	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
ATP-synt_E	PF05680.12	gi|336254619|ref|YP_004597726.1|	-	0.14	12.5	0.2	0.14	12.5	0.2	1.5	2	0	0	2	2	2	0	ATP	synthase	E	chain
Gly-zipper_OmpA	PF13436.6	gi|336254619|ref|YP_004597726.1|	-	1.4	8.8	20.4	1.5	8.6	19.1	1.7	1	1	0	1	1	1	0	Glycine-zipper	domain
Bacteriocin_IIc	PF10439.9	gi|336254619|ref|YP_004597726.1|	-	1.7	8.8	11.2	2.6	8.2	11.2	1.3	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Hydrolase_6	PF13344.6	gi|336254620|ref|YP_004597727.1|	-	1.3e-24	86.2	0.0	4.5e-24	84.5	0.0	1.9	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336254620|ref|YP_004597727.1|	-	2.9e-21	75.3	0.7	9.3e-21	73.7	0.5	2.0	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|336254620|ref|YP_004597727.1|	-	1.6e-07	31.9	1.3	1.8e-06	28.4	1.3	2.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|336254620|ref|YP_004597727.1|	-	5.7e-05	23.3	0.1	0.00051	20.2	0.0	2.2	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|336254620|ref|YP_004597727.1|	-	0.0073	15.9	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.12	gi|336254620|ref|YP_004597727.1|	-	0.027	14.2	0.0	0.059	13.1	0.0	1.5	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
SHOCT	PF09851.9	gi|336254621|ref|YP_004597728.1|	-	9e-09	34.8	0.3	1.5e-08	34.1	0.3	1.4	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|336254621|ref|YP_004597728.1|	-	0.0014	18.7	7.5	0.0078	16.3	7.3	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Ric8	PF10165.9	gi|336254621|ref|YP_004597728.1|	-	0.03	13.4	0.0	0.036	13.1	0.0	1.0	1	0	0	1	1	1	0	Guanine	nucleotide	exchange	factor	synembryn
GvpG	PF05120.12	gi|336254621|ref|YP_004597728.1|	-	0.058	13.4	1.5	0.097	12.7	1.4	1.5	1	1	0	1	1	1	0	Gas	vesicle	protein	G
Peptidase_M48	PF01435.18	gi|336254621|ref|YP_004597728.1|	-	0.11	12.3	0.1	0.14	11.9	0.1	1.2	1	0	0	1	1	1	0	Peptidase	family	M48
tRNA_anti-like	PF12869.7	gi|336254621|ref|YP_004597728.1|	-	0.16	11.6	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	tRNA_anti-like
Peptidase_C57	PF03290.13	gi|336254622|ref|YP_004597729.1|	-	0.14	10.8	0.0	0.19	10.4	0.0	1.1	1	0	0	1	1	1	0	Vaccinia	virus	I7	processing	peptidase
Zn-ribbon_8	PF09723.10	gi|336254623|ref|YP_004597730.1|	-	0.005	16.9	5.1	0.011	15.9	5.1	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|336254623|ref|YP_004597730.1|	-	0.0059	16.6	0.8	0.0059	16.6	0.8	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|336254623|ref|YP_004597730.1|	-	0.014	15.2	1.6	0.13	12.1	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
UPF0547	PF10571.9	gi|336254623|ref|YP_004597730.1|	-	0.024	14.7	3.9	2.1	8.5	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
A2L_zn_ribbon	PF08792.10	gi|336254623|ref|YP_004597730.1|	-	0.088	12.5	4.4	2.8	7.8	0.5	2.1	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
NRDD	PF13597.6	gi|336254623|ref|YP_004597730.1|	-	0.23	10.2	0.8	0.21	10.4	0.8	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Rubredoxin_2	PF18073.1	gi|336254623|ref|YP_004597730.1|	-	0.53	10.1	5.9	5.3	6.8	5.9	2.0	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-Di19	PF05605.12	gi|336254624|ref|YP_004597731.1|	-	0.021	15.1	0.1	0.029	14.7	0.1	1.3	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|336254624|ref|YP_004597731.1|	-	0.074	13.0	0.3	0.12	12.3	0.1	1.5	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
MFS_1	PF07690.16	gi|336254625|ref|YP_004597732.1|	-	8.5e-38	130.2	58.2	2.9e-34	118.6	46.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
LacY_symp	PF01306.19	gi|336254625|ref|YP_004597732.1|	-	1.2e-06	27.5	12.6	0.0012	17.7	0.4	3.5	2	1	1	3	3	3	3	LacY	proton/sugar	symporter
MFS_2	PF13347.6	gi|336254625|ref|YP_004597732.1|	-	0.83	8.1	32.1	1.7	7.1	26.1	2.4	1	1	1	2	2	2	0	MFS/sugar	transport	protein
PEPCK_ATP	PF01293.20	gi|336254626|ref|YP_004597733.1|	-	1.3e-59	202.1	0.0	2.6e-59	201.1	0.0	1.5	1	1	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
PBP1_TM	PF14812.6	gi|336254627|ref|YP_004597734.1|	-	0.044	14.2	0.3	0.049	14.0	0.3	1.1	1	0	0	1	1	1	0	Transmembrane	domain	of	transglycosylase	PBP1	at	N-terminal
DUF2505	PF10698.9	gi|336254627|ref|YP_004597734.1|	-	0.049	13.7	0.1	0.052	13.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2505)
DCAF15_WD40	PF14939.6	gi|336254627|ref|YP_004597734.1|	-	0.18	11.5	0.0	0.2	11.3	0.0	1.0	1	0	0	1	1	1	0	DDB1-and	CUL4-substrate	receptor	15,	WD	repeat
CutA1	PF03091.15	gi|336254628|ref|YP_004597735.1|	-	3.4e-29	100.6	0.0	3.8e-29	100.5	0.0	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
Ribosomal_L11	PF00298.19	gi|336254629|ref|YP_004597736.1|	-	1.8e-21	76.4	0.0	2.7e-21	75.8	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.14	gi|336254629|ref|YP_004597736.1|	-	3.9e-17	61.9	0.1	6e-17	61.2	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L1	PF00687.21	gi|336254631|ref|YP_004597738.1|	-	9.6e-41	139.8	0.0	1.2e-40	139.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|336254632|ref|YP_004597739.1|	-	1.3e-23	83.0	0.0	2.3e-23	82.2	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|336254632|ref|YP_004597739.1|	-	1.9e-16	59.8	0.0	3.8e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Cwf_Cwc_15	PF04889.12	gi|336254632|ref|YP_004597739.1|	-	0.58	9.9	9.6	0.86	9.3	9.6	1.3	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
RNA_pol_3_Rpc31	PF11705.8	gi|336254632|ref|YP_004597739.1|	-	0.69	10.1	13.0	1.3	9.3	13.0	1.5	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
PPP4R2	PF09184.11	gi|336254632|ref|YP_004597739.1|	-	1.5	8.4	5.4	2.2	7.8	5.4	1.2	1	0	0	1	1	1	0	PPP4R2
Ribosomal_60s	PF00428.19	gi|336254633|ref|YP_004597740.1|	-	2.5e-16	60.0	17.1	3.3e-16	59.7	17.1	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
RRN3	PF05327.11	gi|336254633|ref|YP_004597740.1|	-	0.0076	14.8	2.6	0.0089	14.6	2.6	1.0	1	0	0	1	1	1	1	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
Cwf_Cwc_15	PF04889.12	gi|336254633|ref|YP_004597740.1|	-	2.4	7.8	6.9	3	7.5	6.9	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
NOA36	PF06524.12	gi|336254633|ref|YP_004597740.1|	-	4	6.7	8.6	4.6	6.5	8.6	1.1	1	0	0	1	1	1	0	NOA36	protein
Sigma70_ner	PF04546.13	gi|336254633|ref|YP_004597740.1|	-	5.7	6.8	9.5	7.3	6.4	9.5	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
DUF2457	PF10446.9	gi|336254633|ref|YP_004597740.1|	-	6.5	5.8	9.4	6.8	5.7	9.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Trypan_PARP	PF05887.11	gi|336254634|ref|YP_004597741.1|	-	0.032	14.2	4.9	0.065	13.2	4.9	1.5	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
SLAC1	PF03595.17	gi|336254634|ref|YP_004597741.1|	-	0.063	12.5	11.1	0.15	11.3	11.2	1.7	1	1	0	1	1	1	0	Voltage-dependent	anion	channel
DUF2070	PF09843.9	gi|336254634|ref|YP_004597741.1|	-	0.14	10.4	3.3	0.19	10.0	3.3	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
BCD	PF15461.6	gi|336254635|ref|YP_004597742.1|	-	5.3e-83	278.6	19.6	7e-83	278.2	19.6	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
Patatin	PF01734.22	gi|336254635|ref|YP_004597742.1|	-	0.002	18.3	1.7	0.0032	17.7	1.7	1.5	1	0	0	1	1	1	1	Patatin-like	phospholipase
TctA	PF01970.16	gi|336254636|ref|YP_004597743.1|	-	1.7e-64	218.1	45.6	2e-64	217.8	45.6	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
BtpA	PF03437.15	gi|336254637|ref|YP_004597744.1|	-	3.3e-83	279.0	4.7	3.8e-83	278.8	4.7	1.0	1	0	0	1	1	1	1	BtpA	family
4HFCP_synth	PF04476.13	gi|336254637|ref|YP_004597744.1|	-	0.0026	17.5	0.6	0.018	14.8	0.0	2.0	1	1	0	2	2	2	1	4-HFC-P	synthase
TGT	PF01702.18	gi|336254637|ref|YP_004597744.1|	-	0.0077	15.4	0.1	0.017	14.3	0.1	1.4	1	1	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
PcrB	PF01884.17	gi|336254637|ref|YP_004597744.1|	-	0.012	15.1	5.6	0.088	12.2	1.3	2.6	2	1	1	3	3	3	0	PcrB	family
Trp_syntA	PF00290.20	gi|336254637|ref|YP_004597744.1|	-	0.023	13.6	1.2	0.037	12.9	1.2	1.4	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
Asparaginase_C	PF17763.1	gi|336254637|ref|YP_004597744.1|	-	0.12	12.6	3.3	1.2	9.4	0.3	2.8	2	2	1	3	3	3	0	Glutaminase/Asparaginase	C-terminal	domain
Oxidored_FMN	PF00724.20	gi|336254638|ref|YP_004597745.1|	-	7.4e-65	219.5	0.0	9.9e-65	219.0	0.0	1.2	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Dus	PF01207.17	gi|336254638|ref|YP_004597745.1|	-	0.077	12.1	0.0	0.14	11.2	0.0	1.5	1	1	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
AhpC-TSA	PF00578.21	gi|336254639|ref|YP_004597746.1|	-	1.2e-16	60.8	0.0	1.5e-16	60.4	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336254639|ref|YP_004597746.1|	-	1.5e-13	50.7	0.0	1.8e-13	50.4	0.0	1.1	1	0	0	1	1	1	1	Redoxin
TatD_DNase	PF01026.21	gi|336254639|ref|YP_004597746.1|	-	0.0034	16.8	0.0	0.0044	16.4	0.0	1.1	1	0	0	1	1	1	1	TatD	related	DNase
TraF	PF13728.6	gi|336254639|ref|YP_004597746.1|	-	0.0047	16.8	0.0	0.025	14.4	0.0	1.9	1	1	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_2	PF13098.6	gi|336254639|ref|YP_004597746.1|	-	0.0079	16.6	0.0	0.013	15.9	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|336254639|ref|YP_004597746.1|	-	0.026	14.8	0.0	0.038	14.3	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like
T4_deiodinase	PF00837.17	gi|336254639|ref|YP_004597746.1|	-	0.064	12.5	0.0	0.083	12.2	0.0	1.2	1	0	0	1	1	1	0	Iodothyronine	deiodinase
SeqA_N	PF17206.3	gi|336254640|ref|YP_004597747.1|	-	0.39	10.1	0.2	0.39	10.1	0.2	2.4	3	0	0	3	3	3	0	SeqA	protein	N-terminal	domain
SAPS	PF04499.15	gi|336254640|ref|YP_004597747.1|	-	0.64	8.7	7.5	0.74	8.5	7.5	1.1	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
DUF4407	PF14362.6	gi|336254640|ref|YP_004597747.1|	-	0.66	9.3	3.7	0.83	8.9	3.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
RRN3	PF05327.11	gi|336254640|ref|YP_004597747.1|	-	2.2	6.7	11.4	2.3	6.7	11.4	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
Nop14	PF04147.12	gi|336254640|ref|YP_004597747.1|	-	2.8	6.0	19.0	3	6.0	19.0	1.0	1	0	0	1	1	1	0	Nop14-like	family
AsnC_trans_reg	PF01037.21	gi|336254641|ref|YP_004597748.1|	-	1.4e-12	47.4	0.7	2.5e-12	46.6	0.1	1.7	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|336254641|ref|YP_004597748.1|	-	1.2e-06	28.0	0.1	3.9e-06	26.3	0.1	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|336254641|ref|YP_004597748.1|	-	1.5e-05	25.3	0.1	0.00049	20.5	0.2	2.4	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|336254641|ref|YP_004597748.1|	-	3.9e-05	23.4	0.9	7.8e-05	22.4	0.3	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254641|ref|YP_004597748.1|	-	0.0021	17.9	1.1	0.0027	17.6	0.1	1.7	2	0	0	2	2	2	1	MarR	family
FeoC	PF09012.10	gi|336254641|ref|YP_004597748.1|	-	0.014	15.4	0.0	0.025	14.7	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|336254641|ref|YP_004597748.1|	-	0.015	15.3	0.1	0.033	14.2	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|336254641|ref|YP_004597748.1|	-	0.03	14.4	0.4	0.053	13.7	0.4	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
TrmB	PF01978.19	gi|336254641|ref|YP_004597748.1|	-	0.037	13.9	0.4	0.066	13.1	0.4	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|336254641|ref|YP_004597748.1|	-	0.057	13.8	0.0	0.13	12.6	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
She9_MDM33	PF05546.11	gi|336254641|ref|YP_004597748.1|	-	0.089	12.6	0.3	0.29	10.9	0.1	2.0	1	1	1	2	2	2	0	She9	/	Mdm33	family
HTH_54	PF18607.1	gi|336254641|ref|YP_004597748.1|	-	0.13	12.3	0.1	0.78	9.8	0.0	2.0	2	0	0	2	2	2	0	ParA	helix	turn	helix	domain
Aminotran_1_2	PF00155.21	gi|336254642|ref|YP_004597749.1|	-	7.2e-69	232.7	0.0	8.2e-69	232.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|336254642|ref|YP_004597749.1|	-	5.5e-07	29.1	0.0	1.3e-06	27.9	0.0	1.5	2	0	0	2	2	2	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|336254642|ref|YP_004597749.1|	-	4.2e-05	22.7	0.0	7.5e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|336254642|ref|YP_004597749.1|	-	0.017	14.4	0.0	0.034	13.5	0.0	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OKR_DC_1	PF01276.20	gi|336254642|ref|YP_004597749.1|	-	0.076	11.7	0.0	0.11	11.2	0.0	1.1	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
Acetyltransf_17	PF17668.1	gi|336254643|ref|YP_004597750.1|	-	1.2e-23	84.1	0.4	3.3e-23	82.7	0.4	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
SCP2_2	PF13530.6	gi|336254643|ref|YP_004597750.1|	-	1.9e-23	82.9	0.0	2.9e-23	82.2	0.0	1.3	1	0	0	1	1	1	1	Sterol	carrier	protein	domain
Acetyltransf_9	PF13527.7	gi|336254643|ref|YP_004597750.1|	-	3.9e-22	78.7	0.0	7.8e-22	77.7	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336254643|ref|YP_004597750.1|	-	0.0052	17.0	0.0	2.2	8.5	0.0	2.4	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	family
DJ-1_PfpI	PF01965.24	gi|336254644|ref|YP_004597751.1|	-	2.6e-47	160.7	0.5	2.9e-47	160.5	0.5	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
Catalase_C	PF18011.1	gi|336254644|ref|YP_004597751.1|	-	4.2e-06	26.5	0.5	2.3e-05	24.1	0.5	1.9	1	1	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
ThiJ_like	PF17124.5	gi|336254644|ref|YP_004597751.1|	-	0.021	14.5	0.0	0.036	13.7	0.0	1.4	1	1	0	1	1	1	0	ThiJ/PfpI	family-like
GATase_3	PF07685.14	gi|336254644|ref|YP_004597751.1|	-	0.023	14.3	0.0	0.033	13.8	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
PAS_4	PF08448.10	gi|336254645|ref|YP_004597752.1|	-	3e-25	88.6	9.5	2e-14	53.8	0.2	3.2	3	0	0	3	3	3	2	PAS	fold
PAS	PF00989.25	gi|336254645|ref|YP_004597752.1|	-	1e-17	64.1	0.2	3.4e-09	36.7	0.1	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|336254645|ref|YP_004597752.1|	-	3.5e-15	56.1	0.0	5.5e-09	36.2	0.1	2.7	2	0	0	2	2	2	2	PAS	domain
GAF_2	PF13185.6	gi|336254645|ref|YP_004597752.1|	-	6.3e-13	49.2	1.3	1.1e-12	48.4	0.3	2.0	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.7	gi|336254645|ref|YP_004597752.1|	-	2.6e-12	46.4	0.5	5e-07	29.6	0.2	2.9	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.6	gi|336254645|ref|YP_004597752.1|	-	5.8e-06	26.7	0.0	1.5e-05	25.3	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
HATPase_c	PF02518.26	gi|336254645|ref|YP_004597752.1|	-	0.00022	21.7	0.0	0.00046	20.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.7	gi|336254645|ref|YP_004597752.1|	-	0.066	13.4	3.6	1.7	8.8	0.1	3.8	3	1	0	3	3	3	0	PAS	fold
HEXIM	PF15313.6	gi|336254645|ref|YP_004597752.1|	-	0.07	13.3	0.5	0.26	11.5	0.0	2.1	2	0	0	2	2	2	0	Hexamethylene	bis-acetamide-inducible	protein
HalX	PF08663.10	gi|336254646|ref|YP_004597753.1|	-	1.2e-16	60.7	8.7	2.8e-16	59.6	8.7	1.6	1	0	0	1	1	1	1	HalX	domain
AIRS_C	PF02769.22	gi|336254647|ref|YP_004597754.1|	-	4.3e-41	140.6	9.6	1.8e-32	112.7	1.6	2.6	3	0	0	3	3	3	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|336254647|ref|YP_004597754.1|	-	2.4e-39	133.9	9.0	1.5e-22	80.1	0.1	3.0	3	0	0	3	3	3	2	AIR	synthase	related	protein,	N-terminal	domain
FGAR-AT_linker	PF18072.1	gi|336254647|ref|YP_004597754.1|	-	4.3e-07	30.4	0.1	1.1e-06	29.0	0.1	1.8	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
GHMP_kinases_C	PF08544.13	gi|336254647|ref|YP_004597754.1|	-	0.35	11.3	2.2	1.3	9.4	0.0	2.5	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
DUF2975	PF11188.8	gi|336254648|ref|YP_004597755.1|	-	0.008	16.1	4.8	0.008	16.1	4.8	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2975)
BofA	PF07441.11	gi|336254648|ref|YP_004597755.1|	-	0.014	15.5	0.8	0.014	15.5	0.8	2.3	1	1	1	2	2	2	0	SigmaK-factor	processing	regulatory	protein	BofA
MFS_1	PF07690.16	gi|336254649|ref|YP_004597756.1|	-	2.9e-14	52.8	55.0	2.8e-08	33.1	29.5	2.4	1	1	2	3	3	3	3	Major	Facilitator	Superfamily
SH3_12	PF18129.1	gi|336254649|ref|YP_004597756.1|	-	0.16	12.1	0.4	7.8	6.7	0.1	2.4	2	0	0	2	2	2	0	Xrn1	SH3-like	domain
HTH_20	PF12840.7	gi|336254650|ref|YP_004597757.1|	-	9.1e-12	44.9	0.9	1.8e-11	43.9	0.9	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254650|ref|YP_004597757.1|	-	1.1e-08	34.8	0.4	2.1e-08	33.9	0.3	1.6	1	1	1	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|336254650|ref|YP_004597757.1|	-	0.0013	18.3	0.1	0.0029	17.2	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
DUF4423	PF14394.6	gi|336254650|ref|YP_004597757.1|	-	0.0019	17.9	0.0	0.0035	17.1	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|336254650|ref|YP_004597757.1|	-	0.004	17.0	0.0	0.0086	15.9	0.0	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336254650|ref|YP_004597757.1|	-	0.0074	16.2	0.3	0.023	14.6	0.3	1.9	1	1	0	1	1	1	1	MarR	family
RP-C	PF03428.13	gi|336254650|ref|YP_004597757.1|	-	0.013	15.2	0.9	0.052	13.2	0.7	2.0	1	1	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Nnf1	PF03980.14	gi|336254650|ref|YP_004597757.1|	-	1.1	9.7	5.0	4	7.9	3.2	2.3	1	1	1	2	2	2	0	Nnf1
LMWPc	PF01451.21	gi|336254651|ref|YP_004597758.1|	-	1.2e-28	100.3	0.1	1.6e-28	99.8	0.1	1.2	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
DUF2526	PF10735.9	gi|336254651|ref|YP_004597758.1|	-	0.17	12.1	0.2	0.17	12.1	0.2	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2526)
PHP_C	PF13263.6	gi|336254652|ref|YP_004597759.1|	-	1.2e-22	79.4	1.3	2.6e-22	78.3	1.3	1.6	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.19	gi|336254652|ref|YP_004597759.1|	-	2.3e-08	34.5	0.1	3.2e-08	34.0	0.1	1.5	1	1	0	1	1	1	1	PHP	domain
Glyco_tranf_2_4	PF13704.6	gi|336254652|ref|YP_004597759.1|	-	0.14	12.7	0.1	0.33	11.5	0.1	1.9	1	1	0	1	1	1	0	Glycosyl	transferase	family	2
Asn_synthase	PF00733.21	gi|336254653|ref|YP_004597760.1|	-	1.1e-33	117.4	6.8	1.1e-21	77.9	1.4	2.1	1	1	1	2	2	2	2	Asparagine	synthase
tRNA_Me_trans	PF03054.16	gi|336254653|ref|YP_004597760.1|	-	0.037	12.8	0.0	0.051	12.4	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|336254653|ref|YP_004597760.1|	-	0.059	12.5	0.0	0.12	11.5	0.0	1.5	1	0	0	1	1	1	0	NAD	synthase
SIMPL	PF04402.14	gi|336254653|ref|YP_004597760.1|	-	0.32	11.4	1.7	1.1	9.6	1.6	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF541)
Cupin_2	PF07883.11	gi|336254654|ref|YP_004597761.1|	-	5.2e-10	38.9	2.3	7.8e-10	38.3	2.3	1.2	1	0	0	1	1	1	1	Cupin	domain
PCO_ADO	PF07847.12	gi|336254654|ref|YP_004597761.1|	-	0.0093	15.4	0.0	0.0094	15.4	0.0	1.1	1	0	0	1	1	1	1	PCO_ADO
Cupin_1	PF00190.22	gi|336254654|ref|YP_004597761.1|	-	0.012	15.3	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	0	Cupin
DMSP_lyase	PF16867.5	gi|336254654|ref|YP_004597761.1|	-	0.016	14.9	0.1	0.02	14.6	0.1	1.1	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
Cupin_3	PF05899.12	gi|336254654|ref|YP_004597761.1|	-	0.03	14.0	0.2	0.047	13.4	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
ParA	PF10609.9	gi|336254655|ref|YP_004597762.1|	-	7e-90	300.8	0.1	8.8e-90	300.4	0.1	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|336254655|ref|YP_004597762.1|	-	1.1e-12	48.1	0.0	1.9e-12	47.3	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|336254655|ref|YP_004597762.1|	-	3.2e-11	43.5	0.2	3.9e-08	33.4	0.3	2.2	2	0	0	2	2	2	2	AAA	domain
ArsA_ATPase	PF02374.15	gi|336254655|ref|YP_004597762.1|	-	7.4e-07	28.6	2.6	0.00029	20.1	0.7	2.9	2	1	1	3	3	3	2	Anion-transporting	ATPase
FeS_assembly_P	PF01883.19	gi|336254655|ref|YP_004597762.1|	-	1.7e-06	28.1	0.3	8e-06	25.9	0.1	2.1	2	0	0	2	2	2	1	Iron-sulfur	cluster	assembly	protein
MipZ	PF09140.11	gi|336254655|ref|YP_004597762.1|	-	0.00012	21.5	0.3	0.00022	20.6	0.2	1.5	2	0	0	2	2	2	1	ATPase	MipZ
AAA_26	PF13500.6	gi|336254655|ref|YP_004597762.1|	-	0.00056	19.8	0.1	0.68	9.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
VirC1	PF07015.11	gi|336254655|ref|YP_004597762.1|	-	0.0016	17.8	0.0	0.0031	16.9	0.0	1.4	1	0	0	1	1	1	1	VirC1	protein
CBP_BcsQ	PF06564.12	gi|336254655|ref|YP_004597762.1|	-	0.0079	15.7	0.4	0.6	9.5	0.8	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|336254655|ref|YP_004597762.1|	-	0.032	13.9	0.2	0.051	13.2	0.2	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.18	gi|336254655|ref|YP_004597762.1|	-	0.034	13.6	0.1	0.088	12.2	0.2	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
DUF1490	PF07371.12	gi|336254655|ref|YP_004597762.1|	-	0.049	13.7	0.8	0.15	12.2	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1490)
NB-ARC	PF00931.22	gi|336254655|ref|YP_004597762.1|	-	0.087	12.0	0.1	0.23	10.6	0.1	1.6	2	0	0	2	2	2	0	NB-ARC	domain
APS_kinase	PF01583.20	gi|336254655|ref|YP_004597762.1|	-	0.097	12.6	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NTPase_1	PF03266.15	gi|336254655|ref|YP_004597762.1|	-	0.15	11.9	0.2	0.37	10.7	0.2	1.6	1	0	0	1	1	1	0	NTPase
Ubie_methyltran	PF01209.18	gi|336254655|ref|YP_004597762.1|	-	0.16	11.3	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Bax1-I	PF01027.20	gi|336254656|ref|YP_004597763.1|	-	0.07	12.9	7.0	0.083	12.7	7.0	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
DUF997	PF06196.12	gi|336254656|ref|YP_004597763.1|	-	0.9	9.6	6.2	0.17	11.9	1.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
Bax1-I	PF01027.20	gi|336254657|ref|YP_004597764.1|	-	0.032	14.1	9.4	0.037	13.9	9.4	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
DUF996	PF06195.13	gi|336254657|ref|YP_004597764.1|	-	0.081	13.2	5.1	0.091	13.0	5.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF996)
Lig_chan	PF00060.26	gi|336254657|ref|YP_004597764.1|	-	3.3	7.5	5.1	2.9	7.7	0.2	2.1	2	0	0	2	2	2	0	Ligand-gated	ion	channel
Ost5	PF05251.12	gi|336254657|ref|YP_004597764.1|	-	8.5	6.7	10.2	0.16	12.2	3.2	1.7	2	0	0	2	2	2	0	Oligosaccharyltransferase	subunit	5
NrfD	PF03916.14	gi|336254658|ref|YP_004597765.1|	-	3.5e-19	69.6	17.7	3.5e-19	69.6	17.7	1.7	1	1	1	2	2	2	2	Polysulphide	reductase,	NrfD
Ferredoxin_N	PF16947.5	gi|336254659|ref|YP_004597766.1|	-	1.8e-36	124.0	6.4	1.8e-36	124.0	6.4	2.7	2	0	0	2	2	2	1	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
Fer4_7	PF12838.7	gi|336254659|ref|YP_004597766.1|	-	3.9e-14	53.0	23.0	1.1e-05	25.9	1.6	4.2	3	1	1	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336254659|ref|YP_004597766.1|	-	1.3e-12	47.7	17.6	3.2e-08	33.5	0.3	3.6	2	2	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|336254659|ref|YP_004597766.1|	-	2.5e-11	43.6	6.0	2.5e-11	43.6	6.0	2.9	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336254659|ref|YP_004597766.1|	-	1.7e-07	30.7	34.1	0.00013	21.7	3.5	5.0	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|336254659|ref|YP_004597766.1|	-	6e-07	29.5	26.7	0.00054	20.1	8.3	3.7	2	2	3	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336254659|ref|YP_004597766.1|	-	1.1e-06	28.5	37.0	0.0015	18.5	2.9	4.8	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|336254659|ref|YP_004597766.1|	-	1.2e-05	25.1	10.1	0.00034	20.5	1.9	4.6	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|336254659|ref|YP_004597766.1|	-	0.00024	21.5	23.8	0.053	14.0	8.4	3.5	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|336254659|ref|YP_004597766.1|	-	0.0012	19.7	40.7	0.17	12.9	2.2	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336254659|ref|YP_004597766.1|	-	0.0062	17.5	25.9	1	10.4	0.0	4.8	3	1	0	4	4	4	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|336254659|ref|YP_004597766.1|	-	0.019	15.4	30.3	0.16	12.6	3.3	4.4	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336254659|ref|YP_004597766.1|	-	0.022	14.9	21.9	0.33	11.1	8.6	3.7	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336254659|ref|YP_004597766.1|	-	0.024	15.2	26.1	0.84	10.2	7.5	4.1	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
SHOCT	PF09851.9	gi|336254659|ref|YP_004597766.1|	-	0.094	12.5	0.7	1.3	8.8	0.1	3.0	2	0	0	2	2	2	0	Short	C-terminal	domain
Fer4_15	PF13459.6	gi|336254659|ref|YP_004597766.1|	-	4.9	8.0	22.1	0.38	11.5	0.4	4.7	5	1	0	5	5	4	0	4Fe-4S	single	cluster	domain
Cupin_2	PF07883.11	gi|336254660|ref|YP_004597767.1|	-	1.7e-08	34.0	0.2	2.3e-08	33.6	0.2	1.3	1	0	0	1	1	1	1	Cupin	domain
Pirin_C_2	PF17954.1	gi|336254660|ref|YP_004597767.1|	-	0.023	14.9	0.0	0.032	14.4	0.0	1.2	1	0	0	1	1	1	0	Quercetinase	C-terminal	cupin	domain
Cupin_3	PF05899.12	gi|336254660|ref|YP_004597767.1|	-	0.026	14.2	0.0	0.06	13.0	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
DUF2917	PF11142.8	gi|336254660|ref|YP_004597767.1|	-	0.028	13.8	0.0	0.05	13.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2917)
CENP-C_C	PF11699.8	gi|336254660|ref|YP_004597767.1|	-	0.045	14.0	0.0	0.063	13.5	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
HutD	PF05962.11	gi|336254660|ref|YP_004597767.1|	-	0.095	12.7	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	HutD
Pirin_C	PF05726.13	gi|336254660|ref|YP_004597767.1|	-	0.12	12.7	0.0	0.17	12.3	0.0	1.2	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
HTH_10	PF04967.12	gi|336254661|ref|YP_004597768.1|	-	3.1e-19	68.5	0.4	7.6e-19	67.3	0.0	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|336254661|ref|YP_004597768.1|	-	0.00016	21.8	0.0	0.085	13.0	0.1	2.2	2	0	0	2	2	2	2	Helix-turn-helix	of	insertion	element	transposase
BAT	PF15915.5	gi|336254661|ref|YP_004597768.1|	-	0.0014	18.5	0.8	0.0034	17.3	0.2	1.9	1	1	0	2	2	2	1	GAF	and	HTH_10	associated	domain
PuR_N	PF09182.10	gi|336254661|ref|YP_004597768.1|	-	0.005	16.7	0.0	0.011	15.6	0.0	1.6	1	0	0	1	1	1	1	Bacterial	purine	repressor,	N-terminal
NYD-SP28	PF14772.6	gi|336254661|ref|YP_004597768.1|	-	0.0061	16.6	0.1	0.013	15.6	0.1	1.5	1	1	0	1	1	1	1	Sperm	tail
HTH_IclR	PF09339.10	gi|336254661|ref|YP_004597768.1|	-	0.0082	15.9	0.3	0.069	13.0	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254661|ref|YP_004597768.1|	-	0.0091	15.5	0.3	0.02	14.4	0.0	1.8	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336254661|ref|YP_004597768.1|	-	0.012	15.5	0.1	0.037	13.9	0.0	1.9	2	0	0	2	2	1	0	MarR	family
HTH_Tnp_Tc3_2	PF01498.18	gi|336254661|ref|YP_004597768.1|	-	0.022	15.0	0.1	19	5.6	0.0	3.4	4	0	0	4	4	4	0	Transposase
Fe_dep_repress	PF01325.19	gi|336254661|ref|YP_004597768.1|	-	0.027	14.7	0.0	0.059	13.6	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
UPF0122	PF04297.14	gi|336254661|ref|YP_004597768.1|	-	0.058	13.6	0.0	0.11	12.7	0.0	1.5	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_20	PF12840.7	gi|336254661|ref|YP_004597768.1|	-	0.073	13.1	0.5	0.22	11.6	0.2	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
Phage_CI_repr	PF07022.13	gi|336254661|ref|YP_004597768.1|	-	0.079	13.1	0.0	0.19	11.8	0.0	1.6	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
MarR	PF01047.22	gi|336254661|ref|YP_004597768.1|	-	0.1	12.5	0.0	0.25	11.3	0.0	1.7	1	0	0	1	1	1	0	MarR	family
HTH_35	PF13693.6	gi|336254661|ref|YP_004597768.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PilN	PF05137.13	gi|336254661|ref|YP_004597768.1|	-	0.12	12.5	0.2	5.1	7.3	0.0	2.6	2	2	0	2	2	2	0	Fimbrial	assembly	protein	(PilN)
DUF2249	PF10006.9	gi|336254662|ref|YP_004597769.1|	-	4.6e-19	68.1	0.1	5.2e-19	67.9	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|336254662|ref|YP_004597769.1|	-	0.00037	20.3	0.0	0.00051	19.8	0.0	1.4	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|336254663|ref|YP_004597770.1|	-	4.7e-26	90.5	0.9	5.1e-26	90.3	0.9	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DUF2249	PF10006.9	gi|336254664|ref|YP_004597771.1|	-	1.7e-13	50.2	0.2	2.1e-13	49.9	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|336254664|ref|YP_004597771.1|	-	0.0052	16.6	0.0	0.0077	16.0	0.0	1.3	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Abhydrolase_1	PF00561.20	gi|336254665|ref|YP_004597772.1|	-	6.2e-25	88.3	0.1	2e-24	86.7	0.1	1.7	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|336254665|ref|YP_004597772.1|	-	3e-20	73.8	12.2	3.8e-20	73.4	12.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|336254665|ref|YP_004597772.1|	-	1.2e-12	47.7	0.1	9.2e-12	44.7	0.1	1.9	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Thioesterase	PF00975.20	gi|336254665|ref|YP_004597772.1|	-	0.089	12.9	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
Cu-oxidase_3	PF07732.15	gi|336254666|ref|YP_004597773.1|	-	9.9e-10	38.5	0.0	2.3e-09	37.3	0.0	1.6	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|336254666|ref|YP_004597773.1|	-	1.4e-06	28.0	0.0	5.1e-06	26.3	0.0	2.0	2	1	0	2	2	2	1	Multicopper	oxidase
TAT_signal	PF10518.9	gi|336254666|ref|YP_004597773.1|	-	0.0046	16.7	0.2	0.011	15.5	0.2	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Copper-bind	PF00127.20	gi|336254666|ref|YP_004597773.1|	-	0.015	15.7	0.2	0.054	14.0	0.0	2.0	2	0	0	2	2	2	0	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|336254666|ref|YP_004597773.1|	-	0.09	12.9	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Cupredoxin-like	domain
VATC	PF18716.1	gi|336254667|ref|YP_004597774.1|	-	9.1e-05	22.2	1.2	0.00013	21.7	1.2	1.3	1	1	0	1	1	1	1	Vms1-associating	treble	clef	domain
TFIIB	PF00382.19	gi|336254668|ref|YP_004597775.1|	-	3.8e-40	135.8	0.0	7.7e-19	67.5	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336254668|ref|YP_004597775.1|	-	1.1e-15	56.8	2.6	2.3e-15	55.8	2.6	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|336254668|ref|YP_004597775.1|	-	0.015	15.3	0.5	0.026	14.6	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|336254668|ref|YP_004597775.1|	-	0.03	14.2	1.7	0.056	13.4	1.3	1.7	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Sigma70_r4	PF04545.16	gi|336254668|ref|YP_004597775.1|	-	0.058	12.9	6.0	0.11	12.1	0.0	3.8	4	0	0	4	4	4	0	Sigma-70,	region	4
YopD	PF05844.12	gi|336254668|ref|YP_004597775.1|	-	0.1	11.6	0.2	0.19	10.7	0.2	1.3	1	0	0	1	1	1	0	YopD	protein
zf-IS66	PF13005.7	gi|336254668|ref|YP_004597775.1|	-	0.61	10.5	3.7	4.5	7.8	0.2	2.8	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Zn-ribbon_8	PF09723.10	gi|336254668|ref|YP_004597775.1|	-	1.2	9.3	5.6	2.7	8.2	0.9	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|336254668|ref|YP_004597775.1|	-	1.2	8.7	3.7	10	5.7	3.6	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|336254668|ref|YP_004597775.1|	-	1.2	9.2	4.0	3.6	7.7	4.0	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Glu-tRNAGln	PF02686.15	gi|336254669|ref|YP_004597776.1|	-	3.5e-16	59.2	4.7	3.5e-16	59.2	4.7	1.4	2	0	0	2	2	2	1	Glu-tRNAGln	amidotransferase	C	subunit
Ferritin	PF00210.24	gi|336254669|ref|YP_004597776.1|	-	0.048	13.6	0.7	0.062	13.2	0.7	1.2	1	1	0	1	1	1	0	Ferritin-like	domain
Amidase	PF01425.21	gi|336254670|ref|YP_004597777.1|	-	1.4e-146	489.1	0.3	1.6e-146	488.8	0.3	1.0	1	0	0	1	1	1	1	Amidase
MarR	PF01047.22	gi|336254672|ref|YP_004597779.1|	-	6.7e-05	22.7	0.0	9.7e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336254672|ref|YP_004597779.1|	-	0.00013	21.8	0.0	0.00021	21.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336254672|ref|YP_004597779.1|	-	0.00084	19.2	0.0	0.0011	18.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|336254672|ref|YP_004597779.1|	-	0.0012	19.0	0.0	0.0016	18.5	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|336254672|ref|YP_004597779.1|	-	0.0055	17.2	0.0	0.0073	16.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|336254672|ref|YP_004597779.1|	-	0.15	11.9	0.0	0.2	11.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_24	PF13412.6	gi|336254672|ref|YP_004597779.1|	-	0.16	11.6	0.0	0.27	10.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TANGO2	PF05742.12	gi|336254673|ref|YP_004597780.1|	-	2.3e-24	86.8	0.0	7.2e-24	85.2	0.0	1.7	1	1	0	1	1	1	1	Transport	and	Golgi	organisation	2
AMP-binding	PF00501.28	gi|336254674|ref|YP_004597781.1|	-	1.9e-88	296.9	0.0	2.3e-88	296.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336254674|ref|YP_004597781.1|	-	9.6e-17	61.7	2.2	9.1e-16	58.6	0.6	2.4	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
MR_MLE_C	PF13378.6	gi|336254675|ref|YP_004597782.1|	-	9.7e-37	126.7	8.4	9.7e-37	126.7	8.4	1.7	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336254675|ref|YP_004597782.1|	-	1.2e-07	32.0	0.0	1.1e-06	28.9	0.0	2.4	1	1	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
UbiA	PF01040.18	gi|336254676|ref|YP_004597783.1|	-	3e-40	138.1	18.0	3e-40	138.1	18.0	1.2	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
Iron_transport	PF10634.9	gi|336254677|ref|YP_004597784.1|	-	0.00072	19.8	0.0	0.0034	17.6	0.0	2.0	2	0	0	2	2	2	1	Fe2+	transport	protein
TAT_signal	PF10518.9	gi|336254677|ref|YP_004597784.1|	-	0.16	11.9	2.4	0.28	11.1	2.4	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.9	gi|336254678|ref|YP_004597785.1|	-	0.15	12.0	0.1	0.15	12.0	0.1	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ECH_1	PF00378.20	gi|336254679|ref|YP_004597786.1|	-	3.8e-55	186.9	0.0	4.6e-55	186.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|336254679|ref|YP_004597786.1|	-	7.1e-14	52.0	0.0	9.8e-14	51.6	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
Beta_helix	PF13229.6	gi|336254680|ref|YP_004597787.1|	-	3e-25	88.9	5.9	2.5e-24	85.9	2.6	2.5	2	1	0	2	2	2	2	Right	handed	beta	helix	region
TAT_signal	PF10518.9	gi|336254680|ref|YP_004597787.1|	-	8.1	6.5	11.7	0.055	13.3	2.7	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EamA	PF00892.20	gi|336254682|ref|YP_004597789.1|	-	8.1e-26	90.8	22.1	1.9e-14	54.0	10.8	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|336254682|ref|YP_004597789.1|	-	0.082	12.2	8.0	0.53	9.6	1.4	2.4	2	1	0	2	2	2	0	Triose-phosphate	Transporter	family
TMEM234	PF10639.9	gi|336254682|ref|YP_004597789.1|	-	0.1	12.6	0.6	0.1	12.6	0.6	3.6	3	1	0	3	3	3	0	Putative	transmembrane	family	234
TPP_enzyme_N	PF02776.18	gi|336254683|ref|YP_004597790.1|	-	3e-36	124.6	0.1	1.2e-35	122.7	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|336254683|ref|YP_004597790.1|	-	5.9e-09	35.9	0.0	1.3e-08	34.8	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|336254683|ref|YP_004597790.1|	-	0.00012	21.8	0.0	0.00026	20.7	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_M_2	PF16582.5	gi|336254683|ref|YP_004597790.1|	-	0.00065	19.5	0.0	0.0013	18.5	0.0	1.4	1	1	0	1	1	1	1	Middle	domain	of	thiamine	pyrophosphate
Chorismate_bind	PF00425.18	gi|336254684|ref|YP_004597791.1|	-	1.5e-74	250.8	0.0	2.2e-74	250.3	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Oxidored_molyb	PF00174.19	gi|336254685|ref|YP_004597792.1|	-	6.2e-38	130.1	0.0	7.7e-38	129.8	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
RHH_1	PF01402.21	gi|336254687|ref|YP_004597794.1|	-	0.0034	17.3	0.1	0.0045	16.9	0.1	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IclR	PF01614.18	gi|336254687|ref|YP_004597794.1|	-	0.015	15.1	0.0	0.019	14.8	0.0	1.1	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
YjbE	PF11106.8	gi|336254688|ref|YP_004597795.1|	-	0.045	14.0	3.4	0.065	13.5	3.4	1.4	1	1	0	1	1	1	0	Exopolysaccharide	production	protein	YjbE
TAT_signal	PF10518.9	gi|336254690|ref|YP_004597797.1|	-	0.028	14.3	3.9	0.069	13.0	3.9	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336254690|ref|YP_004597797.1|	-	0.029	13.7	0.3	0.11	11.9	0.3	1.9	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DUF4407	PF14362.6	gi|336254690|ref|YP_004597797.1|	-	0.24	10.7	5.4	0.11	11.9	1.8	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
His_biosynth	PF00977.21	gi|336254691|ref|YP_004597798.1|	-	3.3e-80	268.8	0.1	3.8e-80	268.6	0.1	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|336254691|ref|YP_004597798.1|	-	9.9e-08	31.4	0.0	6.2e-07	28.8	0.0	1.9	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|336254691|ref|YP_004597798.1|	-	7.3e-06	25.6	1.2	0.00021	20.8	0.1	2.1	2	0	0	2	2	2	1	Nitronate	monooxygenase
G3P_antiterm	PF04309.12	gi|336254691|ref|YP_004597798.1|	-	9.8e-05	21.8	0.0	0.0002	20.8	0.0	1.5	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
ThiG	PF05690.14	gi|336254691|ref|YP_004597798.1|	-	0.00028	20.3	0.1	0.0094	15.3	0.0	2.2	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|336254691|ref|YP_004597798.1|	-	0.00059	19.1	0.1	0.0014	17.9	0.0	1.5	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.17	gi|336254691|ref|YP_004597798.1|	-	0.011	15.1	0.2	0.12	11.7	0.0	2.1	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
PcrB	PF01884.17	gi|336254691|ref|YP_004597798.1|	-	0.013	15.0	0.1	0.022	14.2	0.1	1.4	1	0	0	1	1	1	0	PcrB	family
IMPDH	PF00478.25	gi|336254691|ref|YP_004597798.1|	-	0.022	13.7	0.0	0.034	13.1	0.0	1.2	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.17	gi|336254691|ref|YP_004597798.1|	-	0.031	13.4	0.1	0.048	12.8	0.1	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
FMN_dh	PF01070.18	gi|336254691|ref|YP_004597798.1|	-	0.043	12.8	0.2	0.094	11.7	0.2	1.5	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
zinc_ribbon_2	PF13240.6	gi|336254692|ref|YP_004597799.1|	-	3.3e-08	33.0	18.3	0.00036	20.1	5.0	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|336254692|ref|YP_004597799.1|	-	0.00028	21.0	2.7	0.31	11.2	0.2	2.5	2	1	0	2	2	2	2	Nin	one	binding	(NOB1)	Zn-ribbon	like
ARL6IP6	PF15062.6	gi|336254692|ref|YP_004597799.1|	-	0.028	14.5	0.4	0.045	13.9	0.4	1.3	1	0	0	1	1	1	0	Haemopoietic	lineage	transmembrane	helix
DUF3797	PF12677.7	gi|336254692|ref|YP_004597799.1|	-	0.059	13.3	0.2	0.059	13.3	0.2	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3797)
DZR	PF12773.7	gi|336254692|ref|YP_004597799.1|	-	0.1	12.6	13.3	0.37	10.8	2.6	2.2	1	1	1	2	2	2	0	Double	zinc	ribbon
HypA	PF01155.19	gi|336254692|ref|YP_004597799.1|	-	0.22	11.6	6.9	1.5	8.9	0.5	2.3	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Cytochrom_c3_2	PF14537.6	gi|336254692|ref|YP_004597799.1|	-	1.1	9.7	5.4	26	5.4	0.1	2.3	2	0	0	2	2	2	0	Cytochrome	c3
zf-RING_7	PF02591.15	gi|336254692|ref|YP_004597799.1|	-	1.6	9.0	5.1	1.8	8.8	0.2	2.9	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|336254692|ref|YP_004597799.1|	-	1.8	8.5	8.9	27	4.8	0.1	4.1	3	1	1	4	4	4	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|336254692|ref|YP_004597799.1|	-	1.9	8.7	12.9	3.5	7.8	2.3	2.9	2	2	0	2	2	2	0	Zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|336254692|ref|YP_004597799.1|	-	2.7	8.0	13.0	0.79	9.7	4.7	2.7	2	1	0	2	2	2	0	SprT-like	zinc	ribbon	domain
HalOD2	PF18547.1	gi|336254692|ref|YP_004597799.1|	-	3.6	7.6	16.4	0.26	11.2	1.1	3.3	2	2	2	4	4	4	0	Halobacterial	output	domain	2
zf-ribbon_3	PF13248.6	gi|336254692|ref|YP_004597799.1|	-	4.9	6.7	18.3	4.2	6.9	0.3	3.7	3	1	0	3	3	3	0	zinc-ribbon	domain
RNA_pol_L_2	PF13656.6	gi|336254693|ref|YP_004597800.1|	-	1.1e-17	63.6	0.0	1.3e-17	63.4	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|336254693|ref|YP_004597800.1|	-	1.7e-07	30.5	0.0	3.4e-07	29.6	0.0	1.5	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Rhomboid	PF01694.22	gi|336254694|ref|YP_004597801.1|	-	6.9e-09	35.9	17.0	7.4e-06	26.0	7.6	2.8	3	0	0	3	3	3	2	Rhomboid	family
DUF4131	PF13567.6	gi|336254694|ref|YP_004597801.1|	-	4.3	6.9	20.5	1	9.0	0.9	4.2	4	1	1	5	5	5	0	Domain	of	unknown	function	(DUF4131)
ABC_tran	PF00005.27	gi|336254695|ref|YP_004597802.1|	-	1.2e-33	116.5	0.0	1.6e-33	116.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.6	gi|336254695|ref|YP_004597802.1|	-	9.9e-07	28.4	0.1	1.7e-06	27.6	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|336254695|ref|YP_004597802.1|	-	9.7e-06	25.2	0.0	0.00017	21.1	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336254695|ref|YP_004597802.1|	-	0.00047	20.6	0.2	0.00074	19.9	0.2	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|336254695|ref|YP_004597802.1|	-	0.00053	19.9	0.1	1.1	9.0	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
NTPase_1	PF03266.15	gi|336254695|ref|YP_004597802.1|	-	0.0053	16.7	0.3	0.46	10.4	0.1	2.2	2	0	0	2	2	2	1	NTPase
AAA_22	PF13401.6	gi|336254695|ref|YP_004597802.1|	-	0.012	15.9	0.1	0.12	12.6	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|336254695|ref|YP_004597802.1|	-	0.013	15.3	1.9	0.11	12.2	1.9	2.1	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|336254695|ref|YP_004597802.1|	-	0.018	14.4	0.0	0.027	13.8	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_23	PF13476.6	gi|336254695|ref|YP_004597802.1|	-	0.025	15.1	0.0	0.036	14.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|336254695|ref|YP_004597802.1|	-	0.036	13.0	0.3	0.059	12.4	0.3	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA	PF00004.29	gi|336254695|ref|YP_004597802.1|	-	0.05	14.0	0.0	0.12	12.8	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|336254695|ref|YP_004597802.1|	-	0.18	11.6	0.0	0.25	11.0	0.0	1.2	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Rad17	PF03215.15	gi|336254695|ref|YP_004597802.1|	-	0.25	11.2	0.0	0.34	10.8	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|336254695|ref|YP_004597802.1|	-	0.29	11.3	1.9	1.4	9.0	1.4	2.2	1	1	0	1	1	1	0	AAA	domain
FtsX	PF02687.21	gi|336254696|ref|YP_004597803.1|	-	0.00023	21.6	3.4	0.00023	21.6	3.4	2.8	3	0	0	3	3	3	1	FtsX-like	permease	family
EutK_C	PF16365.5	gi|336254696|ref|YP_004597803.1|	-	2.8	8.1	5.9	2.3	8.3	0.2	3.3	2	1	1	3	3	3	0	Ethanolamine	utilization	protein	EutK	C-terminus
MacB_PCD	PF12704.7	gi|336254697|ref|YP_004597804.1|	-	2.5e-17	63.9	4.0	2.5e-17	63.9	4.0	2.1	2	1	1	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|336254697|ref|YP_004597804.1|	-	9.5e-10	38.8	1.1	9.5e-10	38.8	1.1	2.7	3	0	0	3	3	3	1	FtsX-like	permease	family
LptF_LptG	PF03739.14	gi|336254697|ref|YP_004597804.1|	-	0.011	14.6	0.8	0.011	14.6	0.8	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	export	system	permease	LptF/LptG
MTS	PF05175.14	gi|336254698|ref|YP_004597805.1|	-	6.4e-13	48.6	0.0	9.5e-13	48.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|336254698|ref|YP_004597805.1|	-	1e-11	44.8	0.2	1.4e-11	44.4	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|336254698|ref|YP_004597805.1|	-	7.2e-10	39.4	0.0	1.3e-09	38.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254698|ref|YP_004597805.1|	-	4.5e-09	36.3	0.0	6.9e-09	35.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254698|ref|YP_004597805.1|	-	7.4e-07	29.7	0.0	1.4e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|336254698|ref|YP_004597805.1|	-	7.7e-07	29.0	0.1	2.8e-06	27.2	0.1	1.9	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.15	gi|336254698|ref|YP_004597805.1|	-	0.00048	19.8	0.0	0.00061	19.5	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Met_10	PF02475.16	gi|336254698|ref|YP_004597805.1|	-	0.00057	19.7	0.0	0.00086	19.1	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_32	PF13679.6	gi|336254698|ref|YP_004597805.1|	-	0.00082	19.4	0.0	0.001	19.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|336254698|ref|YP_004597805.1|	-	0.0014	18.2	0.0	0.0017	18.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Ubie_methyltran	PF01209.18	gi|336254698|ref|YP_004597805.1|	-	0.0015	17.9	0.0	0.0035	16.7	0.0	1.5	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336254698|ref|YP_004597805.1|	-	0.0022	18.7	0.0	0.0043	17.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|336254698|ref|YP_004597805.1|	-	0.0043	16.3	0.0	0.006	15.9	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_3	PF01596.17	gi|336254698|ref|YP_004597805.1|	-	0.0059	15.8	0.0	0.0077	15.4	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_23	PF13489.6	gi|336254698|ref|YP_004597805.1|	-	0.0074	16.1	0.0	0.0078	16.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336254698|ref|YP_004597805.1|	-	0.026	14.3	0.0	0.035	13.9	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CbiA	PF01656.23	gi|336254698|ref|YP_004597805.1|	-	0.048	13.7	0.0	0.065	13.3	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Methyltransf_4	PF02390.17	gi|336254698|ref|YP_004597805.1|	-	0.14	11.6	0.0	0.28	10.6	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|336254698|ref|YP_004597805.1|	-	0.15	11.7	0.0	0.2	11.3	0.0	1.1	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
AP_endonuc_2	PF01261.24	gi|336254699|ref|YP_004597806.1|	-	0.031	13.7	0.1	0.039	13.4	0.1	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
zf-TFIIB	PF13453.6	gi|336254700|ref|YP_004597807.1|	-	5.9e-05	22.3	2.9	8.9e-05	21.7	2.9	1.3	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
zf-FPG_IleRS	PF06827.14	gi|336254700|ref|YP_004597807.1|	-	9.5e-05	22.2	0.7	0.00014	21.6	0.7	1.3	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
DUF4776	PF16003.5	gi|336254700|ref|YP_004597807.1|	-	0.01	14.9	0.5	0.011	14.8	0.5	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4776)
UPF0547	PF10571.9	gi|336254700|ref|YP_004597807.1|	-	0.017	15.2	2.1	0.62	10.2	0.1	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TRAF6_Z2	PF18048.1	gi|336254700|ref|YP_004597807.1|	-	0.041	14.0	2.9	1.3	9.2	0.4	2.2	2	0	0	2	2	2	0	TNF	receptor-associated	factor	6	zinc	finger	2
Zn-ribbon_8	PF09723.10	gi|336254700|ref|YP_004597807.1|	-	0.059	13.5	2.0	0.13	12.4	2.0	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Anti-TRAP	PF15777.5	gi|336254700|ref|YP_004597807.1|	-	0.077	13.0	0.7	0.13	12.2	0.7	1.3	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Zn_Tnp_IS1	PF03811.13	gi|336254700|ref|YP_004597807.1|	-	0.33	10.7	6.2	1.8	8.4	0.8	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Zn_Tnp_IS1595	PF12760.7	gi|336254700|ref|YP_004597807.1|	-	0.33	10.9	4.2	1.9	8.5	0.1	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336254700|ref|YP_004597807.1|	-	0.4	10.2	3.5	4.2	6.9	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Actin	PF00022.19	gi|336254701|ref|YP_004597808.1|	-	0.00075	18.2	0.0	0.32	9.5	0.0	2.2	2	0	0	2	2	2	2	Actin
FtsA	PF14450.6	gi|336254701|ref|YP_004597808.1|	-	0.021	15.2	0.0	0.1	13.0	0.0	1.9	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Aegerolysin	PF06355.13	gi|336254702|ref|YP_004597809.1|	-	0.073	13.2	0.2	0.14	12.2	0.2	1.4	1	0	0	1	1	1	0	Aegerolysin
DUF417	PF04224.12	gi|336254702|ref|YP_004597809.1|	-	0.077	12.6	0.4	0.13	11.8	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
Diphthamide_syn	PF01866.17	gi|336254703|ref|YP_004597810.1|	-	1.8e-78	264.1	0.0	2.3e-78	263.7	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
GTP-bdg_N	PF13167.6	gi|336254703|ref|YP_004597810.1|	-	0.067	13.9	0.0	2.5	8.8	0.0	2.4	1	1	0	2	2	2	0	GTP-binding	GTPase	N-terminal
CCB1	PF12046.8	gi|336254703|ref|YP_004597810.1|	-	0.25	10.7	0.0	0.41	10.0	0.0	1.2	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
HTH_20	PF12840.7	gi|336254704|ref|YP_004597811.1|	-	0.047	13.8	10.0	8.6	6.5	2.5	4.3	3	1	1	4	4	4	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254704|ref|YP_004597811.1|	-	0.73	9.8	4.2	8.9	6.3	0.2	2.9	4	0	0	4	4	4	0	Bacterial	regulatory	protein,	arsR	family
Lactamase_B_2	PF12706.7	gi|336254705|ref|YP_004597812.1|	-	3.6e-17	62.6	0.5	4.8e-17	62.1	0.5	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336254705|ref|YP_004597812.1|	-	9.8e-11	41.8	0.0	1.5e-10	41.2	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336254705|ref|YP_004597812.1|	-	0.0058	16.7	9.6	0.026	14.6	9.6	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Laminin_II	PF06009.12	gi|336254706|ref|YP_004597813.1|	-	1.3e-07	31.7	7.5	0.0009	19.3	2.4	2.5	1	1	1	2	2	2	2	Laminin	Domain	II
EzrA	PF06160.12	gi|336254706|ref|YP_004597813.1|	-	2.4e-07	29.3	6.2	3.6e-07	28.8	6.2	1.3	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
Lebercilin	PF15619.6	gi|336254706|ref|YP_004597813.1|	-	7e-07	29.1	0.7	3.8e-06	26.7	0.5	2.1	1	1	1	2	2	2	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
AAA_13	PF13166.6	gi|336254706|ref|YP_004597813.1|	-	2.6e-06	26.4	2.3	2.6e-06	26.4	2.3	1.4	2	0	0	2	2	1	1	AAA	domain
GAS	PF13851.6	gi|336254706|ref|YP_004597813.1|	-	4e-06	26.3	1.4	5.8e-05	22.5	0.1	2.5	2	1	0	2	2	1	1	Growth-arrest	specific	micro-tubule	binding
DUF1664	PF07889.12	gi|336254706|ref|YP_004597813.1|	-	6.7e-06	26.2	12.1	0.0026	17.8	2.1	3.4	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.12	gi|336254706|ref|YP_004597813.1|	-	1.1e-05	25.8	22.0	0.0027	18.2	6.2	4.2	1	1	2	3	3	3	2	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.11	gi|336254706|ref|YP_004597813.1|	-	1.2e-05	24.4	13.2	0.00077	18.4	6.9	3.1	1	1	1	2	2	2	2	Spc7	kinetochore	protein
CENP-F_leu_zip	PF10473.9	gi|336254706|ref|YP_004597813.1|	-	1.5e-05	25.1	20.4	2.7e-05	24.2	3.7	2.8	2	1	1	3	3	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TMF_TATA_bd	PF12325.8	gi|336254706|ref|YP_004597813.1|	-	2.9e-05	24.3	12.3	0.00067	19.9	0.1	3.4	1	1	2	3	3	3	1	TATA	element	modulatory	factor	1	TATA	binding
Baculo_PEP_C	PF04513.12	gi|336254706|ref|YP_004597813.1|	-	4.9e-05	23.4	7.4	0.003	17.6	2.5	2.5	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FlaC_arch	PF05377.11	gi|336254706|ref|YP_004597813.1|	-	7e-05	23.1	17.3	0.034	14.6	1.0	4.8	2	1	3	5	5	4	2	Flagella	accessory	protein	C	(FlaC)
XhlA	PF10779.9	gi|336254706|ref|YP_004597813.1|	-	9.1e-05	22.6	17.9	0.0037	17.4	2.3	4.0	2	1	1	4	4	3	2	Haemolysin	XhlA
Mod_r	PF07200.13	gi|336254706|ref|YP_004597813.1|	-	0.0001	22.5	1.5	0.2	11.7	0.1	3.3	1	1	1	2	2	2	1	Modifier	of	rudimentary	(Mod(r))	protein
MscS_porin	PF12795.7	gi|336254706|ref|YP_004597813.1|	-	0.00011	21.9	7.6	0.064	12.8	0.1	3.7	3	1	1	4	4	3	2	Mechanosensitive	ion	channel	porin	domain
ADIP	PF11559.8	gi|336254706|ref|YP_004597813.1|	-	0.0004	20.5	0.3	0.14	12.3	0.0	2.5	1	1	1	2	2	2	1	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|336254706|ref|YP_004597813.1|	-	0.00058	19.8	9.6	0.0034	17.3	3.8	3.4	1	1	2	3	3	3	1	Prefoldin	subunit
HsbA	PF12296.8	gi|336254706|ref|YP_004597813.1|	-	0.00066	20.1	1.2	0.00066	20.1	1.2	2.1	2	0	0	2	2	1	1	Hydrophobic	surface	binding	protein	A
DUF2730	PF10805.8	gi|336254706|ref|YP_004597813.1|	-	0.00069	19.7	13.1	0.068	13.3	1.2	3.3	2	1	2	4	4	3	3	Protein	of	unknown	function	(DUF2730)
Sec34	PF04136.15	gi|336254706|ref|YP_004597813.1|	-	0.0014	18.5	8.5	0.095	12.6	0.3	3.0	2	1	2	4	4	3	3	Sec34-like	family
DUF724	PF05266.14	gi|336254706|ref|YP_004597813.1|	-	0.0021	17.9	1.5	0.13	12.1	0.3	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF724)
BLOC1_2	PF10046.9	gi|336254706|ref|YP_004597813.1|	-	0.0023	18.2	12.8	0.23	11.8	0.9	3.8	2	1	0	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HMMR_N	PF15905.5	gi|336254706|ref|YP_004597813.1|	-	0.0028	17.2	7.5	0.03	13.8	7.4	2.2	1	1	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
DUF3450	PF11932.8	gi|336254706|ref|YP_004597813.1|	-	0.0028	17.0	9.5	0.07	12.4	0.9	3.3	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF3450)
APG6_N	PF17675.1	gi|336254706|ref|YP_004597813.1|	-	0.0039	17.7	11.9	0.014	16.0	2.4	3.9	2	1	2	4	4	4	2	Apg6	coiled-coil	region
Prefoldin	PF02996.17	gi|336254706|ref|YP_004597813.1|	-	0.0054	16.6	7.1	2.7	7.9	0.2	4.2	2	1	1	4	4	4	0	Prefoldin	subunit
DUF948	PF06103.11	gi|336254706|ref|YP_004597813.1|	-	0.0075	16.5	14.9	0.011	16.0	5.0	3.2	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
UPF0242	PF06785.11	gi|336254706|ref|YP_004597813.1|	-	0.0076	16.4	8.9	0.03	14.4	1.7	2.4	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DegS	PF05384.11	gi|336254706|ref|YP_004597813.1|	-	0.0079	15.7	5.0	0.13	11.7	0.3	2.6	2	0	0	2	2	2	1	Sensor	protein	DegS
FH2	PF02181.23	gi|336254706|ref|YP_004597813.1|	-	0.009	15.2	5.7	0.026	13.7	0.7	2.4	1	1	1	2	2	2	1	Formin	Homology	2	Domain
DUF4618	PF15397.6	gi|336254706|ref|YP_004597813.1|	-	0.0099	15.3	1.1	0.17	11.3	1.9	2.4	2	1	0	2	2	1	1	Domain	of	unknown	function	(DUF4618)
Spectrin	PF00435.21	gi|336254706|ref|YP_004597813.1|	-	0.01	16.3	2.5	0.01	16.3	2.5	3.9	2	1	3	5	5	4	0	Spectrin	repeat
SHE3	PF17078.5	gi|336254706|ref|YP_004597813.1|	-	0.011	15.4	2.7	0.019	14.7	2.7	1.3	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
COG6	PF06419.11	gi|336254706|ref|YP_004597813.1|	-	0.013	13.8	3.6	0.78	7.9	0.3	2.4	1	1	0	2	2	2	0	Conserved	oligomeric	complex	COG6
TPR_MLP1_2	PF07926.12	gi|336254706|ref|YP_004597813.1|	-	0.013	15.6	1.3	0.013	15.6	1.3	3.5	2	1	2	4	4	3	0	TPR/MLP1/MLP2-like	protein
COG2	PF06148.11	gi|336254706|ref|YP_004597813.1|	-	0.014	15.5	8.9	1.5	8.9	2.4	3.3	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RmuC	PF02646.16	gi|336254706|ref|YP_004597813.1|	-	0.014	14.5	0.6	1.8	7.6	0.1	2.7	1	1	1	2	2	2	0	RmuC	family
Leu_zip	PF15294.6	gi|336254706|ref|YP_004597813.1|	-	0.015	14.9	6.9	0.044	13.3	1.1	2.4	1	1	1	2	2	2	0	Leucine	zipper
DUF16	PF01519.16	gi|336254706|ref|YP_004597813.1|	-	0.016	15.7	6.6	0.64	10.5	0.6	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
YabA	PF06156.13	gi|336254706|ref|YP_004597813.1|	-	0.017	15.7	1.7	6.9	7.4	0.2	3.1	1	1	1	2	2	2	0	Initiation	control	protein	YabA
TMPIT	PF07851.13	gi|336254706|ref|YP_004597813.1|	-	0.018	14.3	0.6	0.83	8.8	0.1	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
TBCC_N	PF16752.5	gi|336254706|ref|YP_004597813.1|	-	0.018	15.4	9.3	0.077	13.4	0.8	3.3	2	1	2	4	4	3	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF4795	PF16043.5	gi|336254706|ref|YP_004597813.1|	-	0.019	14.6	15.2	0.033	13.8	14.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
DUF4349	PF14257.6	gi|336254706|ref|YP_004597813.1|	-	0.02	14.4	22.2	0.045	13.2	1.2	3.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4349)
Cob_adeno_trans	PF01923.18	gi|336254706|ref|YP_004597813.1|	-	0.023	14.8	6.1	0.17	12.0	1.0	2.7	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
Atg14	PF10186.9	gi|336254706|ref|YP_004597813.1|	-	0.029	13.5	0.0	3	6.8	0.0	2.1	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fib_alpha	PF08702.10	gi|336254706|ref|YP_004597813.1|	-	0.031	14.4	2.8	0.49	10.6	0.7	2.5	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
Filament	PF00038.21	gi|336254706|ref|YP_004597813.1|	-	0.034	13.7	11.5	0.93	9.0	5.8	2.5	1	1	0	1	1	1	0	Intermediate	filament	protein
Laminin_I	PF06008.14	gi|336254706|ref|YP_004597813.1|	-	0.04	13.6	3.6	0.26	11.0	0.2	2.3	1	1	1	2	2	2	0	Laminin	Domain	I
Nsp1_C	PF05064.13	gi|336254706|ref|YP_004597813.1|	-	0.047	13.5	9.4	0.78	9.6	2.4	2.7	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
PI3K_P85_iSH2	PF16454.5	gi|336254706|ref|YP_004597813.1|	-	0.05	13.2	1.0	6.5	6.3	1.0	2.7	1	1	0	1	1	1	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
SKA1	PF07160.12	gi|336254706|ref|YP_004597813.1|	-	0.055	13.3	7.0	2.4	7.9	0.1	3.4	2	1	1	3	3	2	0	Spindle	and	kinetochore-associated	protein	1
CREPT	PF16566.5	gi|336254706|ref|YP_004597813.1|	-	0.056	13.6	0.9	0.44	10.7	0.2	2.3	1	1	2	3	3	3	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
SYCE1	PF15233.6	gi|336254706|ref|YP_004597813.1|	-	0.059	13.4	0.3	0.13	12.3	0.3	1.6	1	0	0	1	1	1	0	Synaptonemal	complex	central	element	protein	1
DUF5082	PF16888.5	gi|336254706|ref|YP_004597813.1|	-	0.071	13.4	6.3	0.64	10.3	6.3	2.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5082)
DUF4201	PF13870.6	gi|336254706|ref|YP_004597813.1|	-	0.075	12.8	1.5	0.67	9.7	0.2	2.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4201)
DUF3552	PF12072.8	gi|336254706|ref|YP_004597813.1|	-	0.077	12.4	6.4	0.77	9.1	0.8	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Prominin	PF05478.11	gi|336254706|ref|YP_004597813.1|	-	0.082	10.8	0.7	0.13	10.2	0.7	1.2	1	0	0	1	1	1	0	Prominin
HOOK	PF05622.12	gi|336254706|ref|YP_004597813.1|	-	0.09	10.9	12.7	0.29	9.2	12.8	1.7	1	1	0	1	1	1	0	HOOK	protein
CCDC-167	PF15188.6	gi|336254706|ref|YP_004597813.1|	-	0.11	12.8	13.7	2.8	8.3	0.6	3.9	2	1	3	5	5	4	0	Coiled-coil	domain-containing	protein	167
CENP-H	PF05837.12	gi|336254706|ref|YP_004597813.1|	-	0.12	12.8	1.9	7.4	7.0	0.1	3.1	2	1	0	2	2	2	0	Centromere	protein	H	(CENP-H)
MCPsignal	PF00015.21	gi|336254706|ref|YP_004597813.1|	-	0.15	11.8	8.6	1.5	8.6	3.7	2.6	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Fzo_mitofusin	PF04799.13	gi|336254706|ref|YP_004597813.1|	-	0.16	11.6	3.5	0.41	10.2	0.2	2.7	1	1	1	3	3	3	0	fzo-like	conserved	region
ZapB	PF06005.12	gi|336254706|ref|YP_004597813.1|	-	0.19	12.2	1.6	12	6.4	0.1	3.7	1	1	1	2	2	2	0	Cell	division	protein	ZapB
Golgin_A5	PF09787.9	gi|336254706|ref|YP_004597813.1|	-	0.23	10.9	12.8	0.43	10.0	3.6	2.3	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
Rx_N	PF18052.1	gi|336254706|ref|YP_004597813.1|	-	0.24	11.7	16.9	0.032	14.5	2.0	4.0	2	1	1	3	3	3	0	Rx	N-terminal	domain
Snapin_Pallidin	PF14712.6	gi|336254706|ref|YP_004597813.1|	-	0.25	11.8	1.2	20	5.7	0.1	3.0	2	1	1	3	3	2	0	Snapin/Pallidin
TMF_DNA_bd	PF12329.8	gi|336254706|ref|YP_004597813.1|	-	0.26	11.3	5.4	34	4.5	0.2	4.1	1	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
YscO-like	PF16789.5	gi|336254706|ref|YP_004597813.1|	-	0.28	11.2	6.4	0.29	11.1	0.7	2.4	1	1	1	2	2	2	0	YscO-like	protein
V_ATPase_I	PF01496.19	gi|336254706|ref|YP_004597813.1|	-	0.3	9.0	3.4	1.8	6.4	2.4	2.2	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Tropomyosin_1	PF12718.7	gi|336254706|ref|YP_004597813.1|	-	0.3	11.2	28.9	0.036	14.2	7.3	4.0	2	1	2	4	4	3	0	Tropomyosin	like
Swi5	PF07061.11	gi|336254706|ref|YP_004597813.1|	-	0.39	10.8	4.3	3.3	7.9	0.0	3.7	3	1	1	4	4	3	0	Swi5
CLZ	PF16526.5	gi|336254706|ref|YP_004597813.1|	-	0.42	11.0	7.7	22	5.5	0.1	4.7	1	1	4	5	5	5	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
CdvA	PF18822.1	gi|336254706|ref|YP_004597813.1|	-	0.45	10.3	6.1	7.2	6.5	0.6	4.0	1	1	1	3	3	3	0	CdvA-like	coiled-coil	domain
Cluap1	PF10234.9	gi|336254706|ref|YP_004597813.1|	-	0.61	9.4	6.0	2.7	7.3	5.5	2.2	1	1	0	1	1	1	0	Clusterin-associated	protein-1
LXG	PF04740.12	gi|336254706|ref|YP_004597813.1|	-	0.62	9.7	11.4	7.9	6.1	11.0	2.6	1	1	1	2	2	1	0	LXG	domain	of	WXG	superfamily
Cauli_AT	PF03233.13	gi|336254706|ref|YP_004597813.1|	-	0.63	10.0	1.7	98	2.8	1.5	3.3	2	1	1	3	3	2	0	Aphid	transmission	protein
Phage_HK97_TLTM	PF06120.11	gi|336254706|ref|YP_004597813.1|	-	0.63	9.2	3.7	4.2	6.5	3.8	2.2	1	1	1	2	2	2	0	Tail	length	tape	measure	protein
Zw10	PF06248.13	gi|336254706|ref|YP_004597813.1|	-	0.64	8.5	7.3	1.5	7.3	7.3	1.6	1	1	0	1	1	1	0	Centromere/kinetochore	Zw10
Sec2p	PF06428.11	gi|336254706|ref|YP_004597813.1|	-	0.68	9.9	6.9	10	6.2	0.5	3.0	2	0	0	2	2	2	0	GDP/GTP	exchange	factor	Sec2p
PspA_IM30	PF04012.12	gi|336254706|ref|YP_004597813.1|	-	0.68	9.5	10.9	0.37	10.3	0.6	3.3	2	1	1	3	3	2	0	PspA/IM30	family
Cnn_1N	PF07989.11	gi|336254706|ref|YP_004597813.1|	-	0.75	10.0	7.1	7.5	6.8	0.2	3.6	2	1	0	2	2	2	0	Centrosomin	N-terminal	motif	1
Phage_GP20	PF06810.11	gi|336254706|ref|YP_004597813.1|	-	0.89	9.3	19.4	0.43	10.4	3.2	3.3	2	1	1	3	3	2	0	Phage	minor	structural	protein	GP20
Sec3_C	PF09763.9	gi|336254706|ref|YP_004597813.1|	-	1	7.7	12.2	0.085	11.2	2.6	2.3	1	1	1	2	2	2	0	Exocyst	complex	component	Sec3
Phage_tail_NK	PF16532.5	gi|336254706|ref|YP_004597813.1|	-	1.1	8.9	8.9	0.13	11.9	0.6	2.7	2	1	1	3	3	2	0	Sf6-type	phage	tail	needle	knob	or	tip	of	some	Caudovirales
AIP3	PF03915.13	gi|336254706|ref|YP_004597813.1|	-	1.1	8.3	17.3	7.5	5.5	16.9	2.3	1	1	0	1	1	1	0	Actin	interacting	protein	3
THOC7	PF05615.13	gi|336254706|ref|YP_004597813.1|	-	1.2	9.4	6.4	1.7	8.9	1.9	2.7	1	1	1	2	2	2	0	Tho	complex	subunit	7
MIP-T3_C	PF17749.1	gi|336254706|ref|YP_004597813.1|	-	1.2	9.1	7.6	5	7.1	4.0	2.8	1	1	1	2	2	2	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
Not3	PF04065.15	gi|336254706|ref|YP_004597813.1|	-	1.5	8.2	6.7	5.5	6.4	4.6	2.4	1	1	1	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
CAMP_factor	PF07373.11	gi|336254706|ref|YP_004597813.1|	-	2	7.9	6.9	0.11	12.0	1.4	1.8	2	0	0	2	2	1	0	CAMP	factor	(Cfa)
MtrB	PF05440.12	gi|336254706|ref|YP_004597813.1|	-	2.5	8.6	7.4	31	5.1	2.3	3.5	2	1	2	4	4	2	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
Fez1	PF06818.15	gi|336254706|ref|YP_004597813.1|	-	2.6	8.5	14.0	0.26	11.7	6.0	2.9	1	1	1	2	2	1	0	Fez1
Seryl_tRNA_N	PF02403.22	gi|336254706|ref|YP_004597813.1|	-	2.7	8.3	12.5	3.2	8.0	0.5	3.6	2	1	2	4	4	3	0	Seryl-tRNA	synthetase	N-terminal	domain
CC2-LZ	PF16516.5	gi|336254706|ref|YP_004597813.1|	-	3.1	8.2	11.8	9.5	6.7	0.4	4.0	2	1	2	4	4	4	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
LPP	PF04728.13	gi|336254706|ref|YP_004597813.1|	-	3.6	8.1	26.5	0.14	12.5	1.5	5.1	3	1	4	7	7	4	0	Lipoprotein	leucine-zipper
DivIC	PF04977.15	gi|336254706|ref|YP_004597813.1|	-	4	7.3	13.6	0.68	9.7	0.1	4.5	2	1	4	6	6	5	0	Septum	formation	initiator
CorA	PF01544.18	gi|336254706|ref|YP_004597813.1|	-	5.1	6.3	14.0	1.9	7.7	4.5	2.5	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Bacillus_HBL	PF05791.11	gi|336254706|ref|YP_004597813.1|	-	5.4	6.8	5.7	4.6	7.0	1.4	2.3	1	1	2	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
Csm1_N	PF18504.1	gi|336254706|ref|YP_004597813.1|	-	5.7	7.4	10.2	16	5.9	0.7	3.9	2	1	1	4	4	3	0	Csm1	N-terminal	domain
DASH_Dad2	PF08654.10	gi|336254706|ref|YP_004597813.1|	-	5.9	7.4	12.7	2.8	8.4	0.1	4.5	2	1	3	5	5	4	0	DASH	complex	subunit	Dad2
Syntaxin-6_N	PF09177.11	gi|336254706|ref|YP_004597813.1|	-	7.6	7.2	17.3	4.3e+02	1.5	0.4	3.8	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
JIP_LZII	PF16471.5	gi|336254706|ref|YP_004597813.1|	-	8.1	6.7	16.8	15	5.8	0.4	4.3	2	1	1	4	4	3	0	JNK-interacting	protein	leucine	zipper	II
HisG	PF01634.18	gi|336254707|ref|YP_004597814.1|	-	0.077	13.0	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	ATP	phosphoribosyltransferase
Lambda_CIII	PF02061.16	gi|336254707|ref|YP_004597814.1|	-	0.096	12.8	0.3	0.3	11.2	0.1	1.9	2	0	0	2	2	2	0	Lambda	Phage	CIII
HTH_20	PF12840.7	gi|336254709|ref|YP_004597816.1|	-	1.3e-11	44.4	0.1	2.5e-11	43.5	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254709|ref|YP_004597816.1|	-	7.7e-10	38.5	0.0	1.3e-09	37.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336254709|ref|YP_004597816.1|	-	3.9e-05	23.5	0.0	5.9e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336254709|ref|YP_004597816.1|	-	0.00016	21.5	0.0	0.00025	20.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336254709|ref|YP_004597816.1|	-	0.00091	19.1	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336254709|ref|YP_004597816.1|	-	0.0029	17.1	0.0	0.0059	16.2	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|336254709|ref|YP_004597816.1|	-	0.0031	17.3	0.1	0.0061	16.3	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_12	PF08461.10	gi|336254709|ref|YP_004597816.1|	-	0.015	15.3	0.5	0.026	14.5	0.1	1.6	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
Replic_Relax	PF13814.6	gi|336254709|ref|YP_004597816.1|	-	0.036	14.1	0.0	0.049	13.7	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
TFIIE_alpha	PF02002.17	gi|336254709|ref|YP_004597816.1|	-	0.04	13.8	0.0	0.055	13.3	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
BBP2_2	PF10082.9	gi|336254709|ref|YP_004597816.1|	-	0.044	12.6	0.0	0.053	12.4	0.0	1.1	1	0	0	1	1	1	0	Putative	beta-barrel	porin	2
HTH_27	PF13463.6	gi|336254709|ref|YP_004597816.1|	-	0.058	13.9	0.0	0.11	13.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|336254709|ref|YP_004597816.1|	-	0.13	12.5	0.0	0.17	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Phage_integrase	PF00589.22	gi|336254710|ref|YP_004597817.1|	-	8.2e-16	58.3	0.0	1.6e-15	57.3	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|336254710|ref|YP_004597817.1|	-	1.7e-08	34.6	0.7	4.3e-08	33.3	0.7	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|336254710|ref|YP_004597817.1|	-	1.7e-05	25.2	0.6	4.2e-05	23.9	0.6	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integr_3	PF16795.5	gi|336254710|ref|YP_004597817.1|	-	0.043	13.7	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	Archaeal	phage	integrase
SF3A3	PF16837.5	gi|336254710|ref|YP_004597817.1|	-	0.065	13.8	1.3	2.6	8.6	1.3	2.4	1	1	0	1	1	1	0	Pre-mRNA-splicing	factor	SF3A3,	of	SF3a	complex,	Prp9
Hydantoinase_B	PF02538.14	gi|336254711|ref|YP_004597818.1|	-	0.01	14.3	0.2	0.01	14.3	0.2	1.1	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
DUF2064	PF09837.9	gi|336254711|ref|YP_004597818.1|	-	0.019	14.8	1.1	0.076	12.8	1.1	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
zf-C2HC_2	PF13913.6	gi|336254712|ref|YP_004597819.1|	-	0.0015	18.4	2.9	0.072	13.0	0.1	2.4	2	0	0	2	2	2	1	zinc-finger	of	a	C2HC-type
zf-C2H2	PF00096.26	gi|336254712|ref|YP_004597819.1|	-	0.0042	17.5	7.8	0.11	12.9	0.3	3.2	3	0	0	3	3	3	1	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.6	gi|336254712|ref|YP_004597819.1|	-	0.0092	16.0	9.2	0.48	10.5	0.1	2.8	3	0	0	3	3	3	2	C2H2-type	zinc	finger
HNH_5	PF14279.6	gi|336254712|ref|YP_004597819.1|	-	0.027	14.3	3.4	0.66	9.9	0.7	2.3	2	0	0	2	2	2	0	HNH	endonuclease
zf-C2H2_jaz	PF12171.8	gi|336254712|ref|YP_004597819.1|	-	0.064	13.6	3.7	0.86	10.0	0.5	2.5	2	1	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
FYVE	PF01363.21	gi|336254712|ref|YP_004597819.1|	-	0.07	13.3	3.4	0.088	13.0	3.4	1.3	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_4	PF13894.6	gi|336254712|ref|YP_004597819.1|	-	0.088	13.7	7.8	1	10.4	1.1	2.9	3	0	0	3	3	3	0	C2H2-type	zinc	finger
DZR	PF12773.7	gi|336254712|ref|YP_004597819.1|	-	0.11	12.5	7.1	1	9.4	7.1	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|336254712|ref|YP_004597819.1|	-	0.14	11.7	6.0	0.63	9.7	0.2	2.7	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
Elf1	PF05129.13	gi|336254712|ref|YP_004597819.1|	-	0.19	11.8	4.5	2.2	8.4	3.8	2.1	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-HIT	PF04438.16	gi|336254712|ref|YP_004597819.1|	-	0.24	11.3	4.0	9.2	6.2	0.2	3.1	3	0	0	3	3	3	0	HIT	zinc	finger
Rhodanese_C	PF12368.8	gi|336254712|ref|YP_004597819.1|	-	0.31	11.5	7.2	10	6.6	7.9	2.1	1	1	1	2	2	2	0	Rhodanase	C-terminal
zf-H2C2_2	PF13465.6	gi|336254712|ref|YP_004597819.1|	-	0.62	10.6	4.3	32	5.2	0.1	3.2	3	0	0	3	3	3	0	Zinc-finger	double	domain
DUF983	PF06170.12	gi|336254712|ref|YP_004597819.1|	-	1.5	9.3	3.0	9.4	6.7	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
C1_2	PF03107.16	gi|336254712|ref|YP_004597819.1|	-	1.5	9.2	9.3	0.12	12.7	2.9	2.0	1	1	1	2	2	2	0	C1	domain
Lyase_1	PF00206.20	gi|336254713|ref|YP_004597820.1|	-	1.2e-110	369.8	0.3	1.7e-110	369.3	0.3	1.2	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.9	gi|336254713|ref|YP_004597820.1|	-	9.8e-23	80.3	2.8	1.3e-22	80.0	0.5	2.4	2	0	0	2	2	2	1	Fumarase	C	C-terminus
SBP_bac_8	PF13416.6	gi|336254714|ref|YP_004597821.1|	-	2.2e-20	73.6	2.2	2.9e-20	73.2	2.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336254714|ref|YP_004597821.1|	-	0.008	16.0	7.9	0.019	14.8	7.9	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|336254715|ref|YP_004597822.1|	-	8.4e-20	71.3	17.4	8.4e-20	71.3	17.4	2.3	1	1	1	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336254716|ref|YP_004597823.1|	-	2.7e-15	56.6	15.8	5.2e-15	55.7	15.8	1.5	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336254717|ref|YP_004597824.1|	-	3e-33	115.2	0.0	5.1e-33	114.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336254717|ref|YP_004597824.1|	-	9.6e-10	39.2	0.0	4.2e-09	37.1	0.0	2.2	1	0	0	1	1	1	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|336254717|ref|YP_004597824.1|	-	7.1e-07	29.3	0.9	2.4e-05	24.4	0.5	3.0	2	1	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|336254717|ref|YP_004597824.1|	-	7.1e-07	29.3	0.0	0.013	15.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336254717|ref|YP_004597824.1|	-	0.00015	21.3	0.3	0.003	17.0	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|336254717|ref|YP_004597824.1|	-	0.0011	18.9	0.0	0.0018	18.2	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|336254717|ref|YP_004597824.1|	-	0.0012	19.2	0.0	0.0036	17.6	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336254717|ref|YP_004597824.1|	-	0.0013	18.6	0.0	0.0029	17.5	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
CysA_C_terminal	PF17850.1	gi|336254717|ref|YP_004597824.1|	-	0.0018	18.8	1.8	0.0069	16.9	0.2	2.9	3	0	0	3	3	2	1	CysA	C-terminal	regulatory	domain
AAA_15	PF13175.6	gi|336254717|ref|YP_004597824.1|	-	0.0035	17.1	0.0	0.009	15.8	0.0	1.6	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336254717|ref|YP_004597824.1|	-	0.0038	17.6	0.5	0.01	16.2	0.5	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
TOBE	PF03459.17	gi|336254717|ref|YP_004597824.1|	-	0.011	16.0	1.3	0.14	12.5	0.4	2.9	2	1	0	2	2	1	0	TOBE	domain
AAA_29	PF13555.6	gi|336254717|ref|YP_004597824.1|	-	0.015	15.0	0.0	0.036	13.8	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|336254717|ref|YP_004597824.1|	-	0.019	15.4	0.0	0.14	12.6	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|336254717|ref|YP_004597824.1|	-	0.032	14.8	0.1	0.12	12.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|336254717|ref|YP_004597824.1|	-	0.049	13.3	0.2	0.21	11.3	0.2	1.9	1	1	0	1	1	1	0	Cytidylate	kinase
MIT_C	PF16565.5	gi|336254717|ref|YP_004597824.1|	-	0.055	13.5	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Phospholipase	D-like	domain	at	C-terminus	of	MIT
AAA_25	PF13481.6	gi|336254717|ref|YP_004597824.1|	-	0.063	12.8	0.1	0.69	9.4	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|336254717|ref|YP_004597824.1|	-	0.063	12.7	0.0	3.5	7.0	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
AAA_33	PF13671.6	gi|336254717|ref|YP_004597824.1|	-	0.16	12.1	0.2	0.33	11.1	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
DUF4013	PF13197.6	gi|336254718|ref|YP_004597825.1|	-	1.6e-07	31.4	12.8	1.6e-07	31.4	12.8	2.4	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4013)
bPH_2	PF03703.14	gi|336254719|ref|YP_004597826.1|	-	1.2e-51	172.8	3.3	1.1e-20	73.6	0.3	3.3	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.11	gi|336254719|ref|YP_004597826.1|	-	4.6e-06	26.6	0.0	0.0096	16.0	0.0	3.1	3	0	0	3	3	3	2	Bacterial	PH	domain
bPH_3	PF14470.6	gi|336254719|ref|YP_004597826.1|	-	0.0078	16.5	0.0	4.3	7.8	0.0	2.3	2	0	0	2	2	2	2	Bacterial	PH	domain
bPH_5	PF10882.8	gi|336254719|ref|YP_004597826.1|	-	0.014	15.5	0.0	2.9	8.0	0.0	2.6	3	0	0	3	3	3	0	Bacterial	PH	domain
NuDC	PF16273.5	gi|336254719|ref|YP_004597826.1|	-	0.36	11.4	2.9	0.73	10.4	2.9	1.4	1	0	0	1	1	1	0	Nuclear	distribution	C	domain
Trypan_PARP	PF05887.11	gi|336254719|ref|YP_004597826.1|	-	1.3	9.0	7.7	2.6	8.0	7.7	1.5	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
bPH_2	PF03703.14	gi|336254720|ref|YP_004597827.1|	-	4.4e-14	52.4	0.0	6.4e-14	51.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
Mntp	PF02659.15	gi|336254720|ref|YP_004597827.1|	-	0.041	13.6	2.7	0.057	13.2	2.1	1.5	1	1	1	2	2	2	0	Putative	manganese	efflux	pump
Phage_r1t_holin	PF16945.5	gi|336254720|ref|YP_004597827.1|	-	0.9	9.8	8.9	7	6.9	6.2	2.3	2	0	0	2	2	2	0	Putative	lactococcus	lactis	phage	r1t	holin
BolA	PF01722.18	gi|336254721|ref|YP_004597828.1|	-	2.3e-19	69.5	0.3	2.7e-19	69.2	0.3	1.1	1	0	0	1	1	1	1	BolA-like	protein
NifU	PF01106.17	gi|336254722|ref|YP_004597829.1|	-	1.2e-10	41.3	0.0	1.6e-10	41.0	0.0	1.3	1	0	0	1	1	1	1	NifU-like	domain
PSK_trans_fac	PF07704.11	gi|336254723|ref|YP_004597830.1|	-	1	10.2	5.1	4.2	8.2	0.1	2.9	3	0	0	3	3	3	0	Rv0623-like	transcription	factor
MEDS	PF14417.6	gi|336254724|ref|YP_004597831.1|	-	1.8e-52	177.4	1.3	5.6e-52	175.8	0.1	2.4	2	1	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
HATPase_c	PF02518.26	gi|336254724|ref|YP_004597831.1|	-	3.7e-26	91.8	0.0	5.8e-26	91.2	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336254724|ref|YP_004597831.1|	-	5.6e-11	42.3	2.5	1.1e-10	41.4	0.2	2.6	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
ATPase	PF06745.13	gi|336254724|ref|YP_004597831.1|	-	6.5e-05	22.4	0.0	0.00013	21.4	0.0	1.4	1	0	0	1	1	1	1	KaiC
GAF_2	PF13185.6	gi|336254724|ref|YP_004597831.1|	-	0.0002	21.6	0.1	0.00083	19.7	0.1	2.1	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336254724|ref|YP_004597831.1|	-	0.0038	17.6	0.0	0.029	14.7	0.0	2.3	1	1	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|336254724|ref|YP_004597831.1|	-	0.0072	16.2	0.0	0.017	15.0	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
GAF	PF01590.26	gi|336254724|ref|YP_004597831.1|	-	0.011	16.3	0.0	0.044	14.4	0.0	2.1	1	1	0	1	1	1	0	GAF	domain
PEP-utilisers_N	PF05524.13	gi|336254724|ref|YP_004597831.1|	-	0.12	12.6	0.9	35	4.6	0.5	3.0	2	0	0	2	2	2	0	PEP-utilising	enzyme,	N-terminal
PAS_4	PF08448.10	gi|336254725|ref|YP_004597832.1|	-	2.3e-56	188.8	18.1	6.8e-13	48.8	0.3	5.6	5	0	0	5	5	5	5	PAS	fold
PAS_9	PF13426.7	gi|336254725|ref|YP_004597832.1|	-	4.3e-45	152.2	0.0	3.2e-14	53.1	0.0	5.4	5	0	0	5	5	5	5	PAS	domain
PAS	PF00989.25	gi|336254725|ref|YP_004597832.1|	-	6.9e-41	138.8	1.5	5.2e-14	52.2	0.0	5.8	5	1	1	6	6	6	5	PAS	fold
HATPase_c	PF02518.26	gi|336254725|ref|YP_004597832.1|	-	5.2e-27	94.6	0.0	1.5e-26	93.1	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|336254725|ref|YP_004597832.1|	-	4.3e-23	80.8	9.8	9.5e-08	31.9	0.1	5.6	5	0	0	5	5	5	3	PAS	domain
PAS_3	PF08447.12	gi|336254725|ref|YP_004597832.1|	-	2.5e-17	62.9	1.7	2.6e-06	27.6	0.1	5.8	6	0	0	6	6	6	3	PAS	fold
PAS_7	PF12860.7	gi|336254725|ref|YP_004597832.1|	-	2.8e-12	46.8	1.6	0.0023	18.1	0.0	6.0	5	1	0	5	5	5	3	PAS	fold
HisKA	PF00512.25	gi|336254725|ref|YP_004597832.1|	-	1.5e-10	40.9	2.1	3.6e-10	39.7	0.1	2.8	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|336254725|ref|YP_004597832.1|	-	0.00075	19.4	0.0	0.0014	18.5	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
PAS_10	PF13596.6	gi|336254725|ref|YP_004597832.1|	-	0.0015	19.1	0.0	2.4	8.8	0.0	4.0	4	1	0	4	4	4	1	PAS	domain
HATPase_c_2	PF13581.6	gi|336254725|ref|YP_004597832.1|	-	0.0065	16.4	0.0	0.026	14.5	0.1	2.0	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
ApoLp-III	PF07464.11	gi|336254725|ref|YP_004597832.1|	-	0.0082	16.2	0.7	0.48	10.5	0.0	2.4	2	0	0	2	2	2	1	Apolipophorin-III	precursor	(apoLp-III)
Wtap	PF17098.5	gi|336254725|ref|YP_004597832.1|	-	0.13	12.1	2.6	12	5.8	0.8	2.9	3	0	0	3	3	3	0	WTAP/Mum2p	family
MLTR_LBD	PF17765.1	gi|336254725|ref|YP_004597832.1|	-	0.21	11.7	3.6	1.9	8.6	0.0	3.5	4	0	0	4	4	4	0	MmyB-like	transcription	regulator	ligand	binding	domain
bZIP_2	PF07716.15	gi|336254725|ref|YP_004597832.1|	-	6.6	6.9	8.0	4.1	7.5	4.0	2.5	2	0	0	2	2	2	0	Basic	region	leucine	zipper
tRNA-synt_1e	PF01406.19	gi|336254726|ref|YP_004597833.1|	-	4.5e-107	357.9	0.1	1.1e-105	353.3	0.1	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DALR_2	PF09190.11	gi|336254726|ref|YP_004597833.1|	-	8.5e-16	58.2	1.6	7.7e-15	55.1	0.4	2.4	1	1	1	2	2	2	1	DALR	domain
tRNA-synt_1g	PF09334.11	gi|336254726|ref|YP_004597833.1|	-	3e-11	42.7	0.0	0.00013	20.9	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.18	gi|336254726|ref|YP_004597833.1|	-	7.8e-10	38.2	0.0	7.5e-06	25.1	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.22	gi|336254726|ref|YP_004597833.1|	-	0.00061	18.2	0.0	0.004	15.5	0.0	2.2	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1d	PF00750.19	gi|336254726|ref|YP_004597833.1|	-	0.0015	17.5	0.1	0.017	14.1	0.0	2.5	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(R)
FTO_CTD	PF12934.7	gi|336254726|ref|YP_004597833.1|	-	0.024	14.4	0.0	0.044	13.6	0.0	1.4	1	0	0	1	1	1	0	FTO	C-terminal	domain
UVR	PF02151.19	gi|336254726|ref|YP_004597833.1|	-	0.028	14.2	0.4	0.028	14.2	0.4	2.1	2	0	0	2	2	2	0	UvrB/uvrC	motif
tRNA-synt_1c	PF00749.21	gi|336254726|ref|YP_004597833.1|	-	0.057	12.3	0.0	0.15	10.9	0.0	1.7	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
SPP	PF06550.11	gi|336254727|ref|YP_004597834.1|	-	6.4e-89	298.2	15.4	8.1e-89	297.8	15.4	1.0	1	0	0	1	1	1	1	Signal-peptide	peptidase,	presenilin	aspartyl	protease
Peptidase_A22B	PF04258.13	gi|336254727|ref|YP_004597834.1|	-	3e-05	23.7	9.9	0.0014	18.3	5.1	2.6	2	1	0	2	2	2	2	Signal	peptide	peptidase
Presenilin	PF01080.17	gi|336254727|ref|YP_004597834.1|	-	0.00014	20.7	8.8	0.11	11.2	7.2	2.3	2	0	0	2	2	2	2	Presenilin
DUF1700	PF08006.11	gi|336254727|ref|YP_004597834.1|	-	0.082	12.4	2.8	2.4	7.7	1.6	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1700)
Gar1	PF04410.14	gi|336254728|ref|YP_004597835.1|	-	5.3e-05	23.0	0.0	5.6e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
SRP19	PF01922.17	gi|336254729|ref|YP_004597836.1|	-	3.1e-25	89.0	0.0	3.6e-25	88.7	0.0	1.1	1	0	0	1	1	1	1	SRP19	protein
HMA	PF00403.26	gi|336254729|ref|YP_004597836.1|	-	0.12	12.9	0.1	19	5.8	0.0	2.2	2	0	0	2	2	2	0	Heavy-metal-associated	domain
Peripla_BP_2	PF01497.18	gi|336254730|ref|YP_004597837.1|	-	1.7e-23	83.4	3.4	1.7e-23	83.4	3.4	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
PGF-CTERM	PF18204.1	gi|336254730|ref|YP_004597837.1|	-	0.0032	17.4	5.4	0.0073	16.2	5.4	1.7	1	0	0	1	1	1	1	PGF-CTERM	motif
Pilin_N	PF07790.11	gi|336254730|ref|YP_004597837.1|	-	0.076	13.9	0.1	0.26	12.2	0.1	1.9	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
DUF2457	PF10446.9	gi|336254730|ref|YP_004597837.1|	-	0.95	8.5	13.4	1.7	7.7	13.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
PT-VENN	PF04829.13	gi|336254730|ref|YP_004597837.1|	-	2.1	8.5	8.8	1.5	8.9	5.3	2.4	2	0	0	2	2	2	0	Pre-toxin	domain	with	VENN	motif
FecCD	PF01032.18	gi|336254731|ref|YP_004597838.1|	-	2e-94	316.1	30.9	2.5e-94	315.8	30.9	1.0	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|336254731|ref|YP_004597838.1|	-	0.00029	20.4	17.2	0.00061	19.4	17.2	1.7	1	1	0	1	1	1	1	ABC	3	transport	family
DUF3482	PF11981.8	gi|336254731|ref|YP_004597838.1|	-	5.3	6.4	5.1	11	5.3	5.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
ABC_tran	PF00005.27	gi|336254732|ref|YP_004597839.1|	-	6.2e-35	120.7	0.0	1.2e-34	119.8	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336254732|ref|YP_004597839.1|	-	2.5e-08	34.1	0.7	4e-05	23.6	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336254732|ref|YP_004597839.1|	-	0.00018	21.1	0.1	0.026	14.0	0.1	2.3	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|336254732|ref|YP_004597839.1|	-	0.00022	21.8	0.0	0.0003	21.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336254732|ref|YP_004597839.1|	-	0.0007	20.0	1.5	0.0013	19.1	0.5	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
Zeta_toxin	PF06414.12	gi|336254732|ref|YP_004597839.1|	-	0.0019	17.5	0.0	0.0045	16.3	0.0	1.7	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.29	gi|336254732|ref|YP_004597839.1|	-	0.004	17.6	0.0	0.012	16.0	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|336254732|ref|YP_004597839.1|	-	0.0056	16.4	0.1	0.012	15.4	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|336254732|ref|YP_004597839.1|	-	0.0061	16.3	0.0	0.017	14.9	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|336254732|ref|YP_004597839.1|	-	0.015	15.6	0.1	0.051	13.9	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|336254732|ref|YP_004597839.1|	-	0.023	14.4	0.0	0.26	10.9	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.19	gi|336254732|ref|YP_004597839.1|	-	0.034	13.7	0.3	0.11	12.1	0.1	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
RsgA_GTPase	PF03193.16	gi|336254732|ref|YP_004597839.1|	-	0.039	13.9	0.0	0.12	12.3	0.0	1.9	2	0	0	2	2	2	0	RsgA	GTPase
NTPase_1	PF03266.15	gi|336254732|ref|YP_004597839.1|	-	0.05	13.5	0.0	0.15	11.9	0.0	1.8	2	0	0	2	2	2	0	NTPase
AAA_33	PF13671.6	gi|336254732|ref|YP_004597839.1|	-	0.068	13.3	1.2	0.53	10.4	1.2	2.6	1	1	0	1	1	1	0	AAA	domain
DUF3584	PF12128.8	gi|336254732|ref|YP_004597839.1|	-	0.069	10.7	0.1	0.092	10.3	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
NACHT	PF05729.12	gi|336254732|ref|YP_004597839.1|	-	0.086	12.8	0.0	0.23	11.4	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
TsaE	PF02367.17	gi|336254732|ref|YP_004597839.1|	-	0.091	12.8	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MMR_HSR1	PF01926.23	gi|336254732|ref|YP_004597839.1|	-	0.11	12.6	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_27	PF13514.6	gi|336254732|ref|YP_004597839.1|	-	0.12	12.0	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|336254732|ref|YP_004597839.1|	-	0.12	11.6	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_5	PF07728.14	gi|336254732|ref|YP_004597839.1|	-	0.14	12.2	0.0	0.41	10.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_24	PF13479.6	gi|336254732|ref|YP_004597839.1|	-	0.2	11.4	0.0	0.39	10.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|336254732|ref|YP_004597839.1|	-	0.22	11.3	0.2	0.8	9.5	0.1	1.9	2	0	0	2	2	2	0	MukB	N-terminal
Peripla_BP_2	PF01497.18	gi|336254733|ref|YP_004597840.1|	-	2.9e-16	59.8	0.0	6.1e-16	58.7	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|336254733|ref|YP_004597840.1|	-	0.17	11.8	0.0	0.28	11.1	0.0	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3558	PF12079.8	gi|336254733|ref|YP_004597840.1|	-	0.32	11.0	2.1	0.51	10.3	2.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3558)
GatB_N	PF02934.15	gi|336254734|ref|YP_004597841.1|	-	1.2e-64	218.4	0.0	1.9e-64	217.7	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|336254734|ref|YP_004597841.1|	-	1.6e-24	86.5	0.0	3.2e-24	85.5	0.0	1.5	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.14	gi|336254734|ref|YP_004597841.1|	-	7.9e-16	58.1	0.0	1.5e-15	57.2	0.0	1.5	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.10	gi|336254734|ref|YP_004597841.1|	-	0.00067	19.8	0.3	0.0018	18.4	0.3	1.7	1	0	0	1	1	1	1	Yqey-like	protein
PsbQ	PF05757.11	gi|336254735|ref|YP_004597842.1|	-	0.0071	16.1	0.0	0.0084	15.9	0.0	1.1	1	0	0	1	1	1	1	Oxygen	evolving	enhancer	protein	3	(PsbQ)
TAT_signal	PF10518.9	gi|336254735|ref|YP_004597842.1|	-	0.055	13.3	0.2	0.1	12.5	0.2	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Big_9	PF17963.1	gi|336254735|ref|YP_004597842.1|	-	0.082	13.7	2.3	0.71	10.6	0.4	2.1	1	1	1	2	2	2	0	Bacterial	Ig	domain
DUF5429	PF17494.2	gi|336254735|ref|YP_004597842.1|	-	0.16	12.0	0.1	0.23	11.5	0.1	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5429)
AsnC_trans_reg	PF01037.21	gi|336254736|ref|YP_004597843.1|	-	3.1e-11	43.1	0.5	5.3e-11	42.3	0.5	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|336254736|ref|YP_004597843.1|	-	4e-07	29.5	0.3	1.1e-06	28.0	0.3	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|336254736|ref|YP_004597843.1|	-	3.5e-06	26.7	0.0	6.8e-06	25.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254736|ref|YP_004597843.1|	-	0.00011	22.2	0.0	0.00043	20.3	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336254736|ref|YP_004597843.1|	-	0.00036	20.3	0.0	0.00062	19.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|336254736|ref|YP_004597843.1|	-	0.0017	18.2	0.2	0.004	17.0	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336254736|ref|YP_004597843.1|	-	0.023	14.6	0.0	0.064	13.2	0.0	1.8	2	0	0	2	2	2	0	MarR	family
B-block_TFIIIC	PF04182.12	gi|336254736|ref|YP_004597843.1|	-	0.082	13.1	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|336254736|ref|YP_004597843.1|	-	0.083	13.4	0.1	0.25	11.9	0.1	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|336254736|ref|YP_004597843.1|	-	0.096	12.5	0.0	0.26	11.2	0.0	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|336254736|ref|YP_004597843.1|	-	0.11	12.3	0.0	0.62	9.9	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
Nfu_N	PF08712.11	gi|336254736|ref|YP_004597843.1|	-	0.12	12.5	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Scaffold	protein	Nfu/NifU	N	terminal
EamA	PF00892.20	gi|336254737|ref|YP_004597844.1|	-	1.2e-37	129.1	35.2	3.5e-19	69.3	10.4	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
Amj	PF10997.8	gi|336254737|ref|YP_004597844.1|	-	0.0088	15.4	2.8	0.014	14.8	2.3	1.6	1	1	0	1	1	1	1	Alternate	to	MurJ
MFS_1	PF07690.16	gi|336254738|ref|YP_004597845.1|	-	1e-24	87.1	67.8	2.3e-15	56.4	32.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|336254738|ref|YP_004597845.1|	-	0.019	13.8	14.3	0.041	12.8	13.7	1.9	1	1	0	1	1	1	0	MFS_1	like	family
SpoU_methylase	PF00588.19	gi|336254740|ref|YP_004597847.1|	-	1.6e-28	99.7	0.0	2.1e-28	99.3	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Cdc6_C	PF09079.11	gi|336254741|ref|YP_004597848.1|	-	2.5e-19	69.1	0.1	5.1e-19	68.0	0.1	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336254741|ref|YP_004597848.1|	-	3.2e-13	50.1	0.0	1.1e-12	48.4	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336254741|ref|YP_004597848.1|	-	1.9e-07	31.6	0.1	1.9e-07	31.6	0.1	2.6	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336254741|ref|YP_004597848.1|	-	5.4e-05	23.6	0.0	0.00019	21.8	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|336254741|ref|YP_004597848.1|	-	0.00025	21.1	0.3	0.0024	17.9	0.3	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|336254741|ref|YP_004597848.1|	-	0.00072	19.3	0.2	0.0023	17.7	0.0	1.9	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_32	PF13654.6	gi|336254741|ref|YP_004597848.1|	-	0.00092	18.1	0.6	0.21	10.4	0.5	2.4	2	0	0	2	2	2	2	AAA	domain
DUF815	PF05673.13	gi|336254741|ref|YP_004597848.1|	-	0.0015	17.8	0.0	0.0032	16.6	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
PhoH	PF02562.16	gi|336254741|ref|YP_004597848.1|	-	0.0034	16.9	0.0	0.13	11.7	0.0	2.3	2	0	0	2	2	2	1	PhoH-like	protein
ATP-synt_ab	PF00006.25	gi|336254741|ref|YP_004597848.1|	-	0.0038	16.9	0.0	0.0063	16.2	0.0	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
TniB	PF05621.11	gi|336254741|ref|YP_004597848.1|	-	0.005	16.3	0.0	0.024	14.1	0.0	2.0	2	0	0	2	2	2	1	Bacterial	TniB	protein
PIF1	PF05970.14	gi|336254741|ref|YP_004597848.1|	-	0.0056	15.9	0.1	0.026	13.7	0.0	2.0	2	0	0	2	2	2	1	PIF1-like	helicase
NB-ARC	PF00931.22	gi|336254741|ref|YP_004597848.1|	-	0.0096	15.1	0.0	0.018	14.3	0.0	1.5	1	0	0	1	1	1	1	NB-ARC	domain
DUF87	PF01935.17	gi|336254741|ref|YP_004597848.1|	-	0.016	15.3	2.4	0.072	13.2	0.0	2.4	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_assoc_2	PF16193.5	gi|336254741|ref|YP_004597848.1|	-	0.034	14.5	1.5	0.1	13.0	0.7	2.1	1	1	1	2	2	2	0	AAA	C-terminal	domain
PCP_red	PF08369.10	gi|336254741|ref|YP_004597848.1|	-	0.045	14.0	0.5	0.14	12.4	0.2	2.0	2	0	0	2	2	1	0	Proto-chlorophyllide	reductase	57	kD	subunit
IstB_IS21	PF01695.17	gi|336254741|ref|YP_004597848.1|	-	0.06	13.1	0.1	1.1	9.0	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DEAD	PF00270.29	gi|336254741|ref|YP_004597848.1|	-	0.067	13.0	0.7	2.6	7.8	0.1	2.5	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
Arf	PF00025.21	gi|336254741|ref|YP_004597848.1|	-	0.082	12.4	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
ResIII	PF04851.15	gi|336254741|ref|YP_004597848.1|	-	0.098	12.7	0.1	0.24	11.4	0.0	1.8	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.7	gi|336254741|ref|YP_004597848.1|	-	0.13	11.8	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|336254741|ref|YP_004597848.1|	-	0.18	12.2	0.0	0.67	10.4	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
Pterin_bind	PF00809.22	gi|336254742|ref|YP_004597849.1|	-	7.3e-41	140.4	0.0	1e-40	140.0	0.0	1.2	1	0	0	1	1	1	1	Pterin	binding	enzyme
MAF_flag10	PF01973.18	gi|336254743|ref|YP_004597850.1|	-	2.9e-21	75.9	0.0	3.6e-21	75.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TrkA_N	PF02254.18	gi|336254743|ref|YP_004597850.1|	-	0.015	15.6	0.1	0.054	13.8	0.0	1.9	1	1	1	2	2	2	0	TrkA-N	domain
Polysacc_deac_1	PF01522.21	gi|336254743|ref|YP_004597850.1|	-	0.14	12.1	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	Polysaccharide	deacetylase
zinc_ribbon_15	PF17032.5	gi|336254744|ref|YP_004597851.1|	-	0.00091	19.9	0.5	0.0011	19.7	0.5	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|336254744|ref|YP_004597851.1|	-	0.0079	15.9	5.7	0.011	15.5	5.7	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
NRDD	PF13597.6	gi|336254744|ref|YP_004597851.1|	-	0.086	11.6	1.2	0.076	11.8	1.2	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
HypA	PF01155.19	gi|336254744|ref|YP_004597851.1|	-	0.13	12.2	4.8	0.14	12.2	4.8	1.2	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RRN7	PF11781.8	gi|336254744|ref|YP_004597851.1|	-	0.46	10.2	6.6	0.72	9.6	0.8	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|336254744|ref|YP_004597851.1|	-	0.52	10.5	7.1	2.5	8.3	7.2	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
Bac_luciferase	PF00296.20	gi|336254745|ref|YP_004597852.1|	-	3.5e-79	266.5	8.6	4.5e-79	266.1	8.6	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Tubulin	PF00091.25	gi|336254747|ref|YP_004597854.1|	-	8.6e-27	94.6	0.0	1.6e-26	93.8	0.0	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|336254747|ref|YP_004597854.1|	-	0.023	13.9	0.2	0.053	12.7	0.2	1.5	1	1	0	1	1	1	0	Tubulin	like
DivIVA	PF05103.13	gi|336254747|ref|YP_004597854.1|	-	0.14	12.2	0.2	0.39	10.8	0.2	1.7	1	0	0	1	1	1	0	DivIVA	protein
SBP_bac_5	PF00496.22	gi|336254748|ref|YP_004597855.1|	-	3.9e-38	131.4	0.0	1.1e-34	120.0	0.0	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
PAP2_3	PF14378.6	gi|336254749|ref|YP_004597856.1|	-	8.2e-21	74.6	9.9	8.2e-21	74.6	9.9	1.8	2	1	0	2	2	2	1	PAP2	superfamily
PAP2	PF01569.21	gi|336254749|ref|YP_004597856.1|	-	1.1e-11	44.7	5.1	1.1e-11	44.7	5.1	2.3	2	1	1	3	3	3	1	PAP2	superfamily
Nucleos_tra2_N	PF01773.20	gi|336254749|ref|YP_004597856.1|	-	0.14	12.7	4.7	0.12	13.0	1.2	2.5	2	0	0	2	2	2	0	Na+	dependent	nucleoside	transporter	N-terminus
PAP2_C	PF14360.6	gi|336254749|ref|YP_004597856.1|	-	1.2	9.7	8.1	0.12	12.9	2.5	2.3	2	1	0	2	2	2	0	PAP2	superfamily	C-terminal
DUF2070	PF09843.9	gi|336254749|ref|YP_004597856.1|	-	2.8	6.1	16.7	0.84	7.9	7.5	2.0	1	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2070)
FAD_binding_7	PF03441.14	gi|336254750|ref|YP_004597857.1|	-	4.2e-75	251.7	1.7	5.7e-75	251.2	1.7	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|336254750|ref|YP_004597857.1|	-	1.9e-40	138.6	0.6	1.5e-39	135.7	0.1	2.2	2	0	0	2	2	2	1	DNA	photolyase
HalOD1	PF18545.1	gi|336254751|ref|YP_004597858.1|	-	2.2e-22	79.1	0.8	2.8e-22	78.7	0.8	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
CarboxypepD_reg	PF13620.6	gi|336254752|ref|YP_004597859.1|	-	3.3e-07	30.5	0.2	4.4e-07	30.1	0.2	1.2	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DUF4198	PF10670.9	gi|336254752|ref|YP_004597859.1|	-	0.00024	21.6	0.0	0.0003	21.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4198)
Big_1	PF02369.16	gi|336254752|ref|YP_004597859.1|	-	0.013	15.5	0.0	0.076	13.0	0.0	2.2	1	1	0	1	1	1	0	Bacterial	Ig-like	domain	(group	1)
MG4	PF17789.1	gi|336254752|ref|YP_004597859.1|	-	0.094	12.9	0.0	0.12	12.5	0.0	1.1	1	0	0	1	1	1	0	Macroglobulin	domain	MG4
GFO_IDH_MocA	PF01408.22	gi|336254753|ref|YP_004597860.1|	-	1e-23	84.4	0.0	1.6e-23	83.8	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336254753|ref|YP_004597860.1|	-	1.7e-10	40.9	0.0	3.5e-10	39.9	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
2-Hacid_dh_C	PF02826.19	gi|336254753|ref|YP_004597860.1|	-	6.5e-05	22.4	0.0	0.00011	21.6	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336254753|ref|YP_004597860.1|	-	0.00014	22.4	0.0	0.00037	21.0	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
CoA_binding	PF02629.19	gi|336254753|ref|YP_004597860.1|	-	0.0014	19.3	0.0	0.0027	18.3	0.0	1.5	1	0	0	1	1	1	1	CoA	binding	domain
IlvN	PF07991.12	gi|336254753|ref|YP_004597860.1|	-	0.01	15.4	0.0	0.017	14.7	0.0	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|336254753|ref|YP_004597860.1|	-	0.011	15.9	0.0	0.027	14.7	0.0	1.6	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ox_reductase_C	PF08635.10	gi|336254753|ref|YP_004597860.1|	-	0.099	12.3	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Putative	oxidoreductase	C	terminal	domain
ABC_tran	PF00005.27	gi|336254754|ref|YP_004597861.1|	-	3.2e-33	115.1	0.0	5.7e-33	114.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336254754|ref|YP_004597861.1|	-	1.7e-13	51.1	0.0	4.9e-13	49.7	0.0	1.8	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336254754|ref|YP_004597861.1|	-	1.4e-06	28.3	0.0	0.025	14.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|336254754|ref|YP_004597861.1|	-	1e-05	26.0	0.6	5.6e-05	23.6	0.2	2.5	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|336254754|ref|YP_004597861.1|	-	8.2e-05	22.1	0.1	0.00037	20.0	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE_2	PF08402.10	gi|336254754|ref|YP_004597861.1|	-	0.00014	22.0	0.1	0.0035	17.5	0.1	2.8	1	1	0	1	1	1	1	TOBE	domain
Rad17	PF03215.15	gi|336254754|ref|YP_004597861.1|	-	0.0038	17.2	0.0	0.0056	16.6	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
RsgA_GTPase	PF03193.16	gi|336254754|ref|YP_004597861.1|	-	0.004	17.1	0.2	0.015	15.2	0.0	1.8	2	0	0	2	2	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|336254754|ref|YP_004597861.1|	-	0.0049	17.2	0.0	0.013	15.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336254754|ref|YP_004597861.1|	-	0.0055	17.1	0.0	0.015	15.7	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|336254754|ref|YP_004597861.1|	-	0.0084	15.8	0.0	0.025	14.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|336254754|ref|YP_004597861.1|	-	0.01	15.6	0.0	1.5	8.5	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
TOBE	PF03459.17	gi|336254754|ref|YP_004597861.1|	-	0.01	16.1	0.0	5.7	7.3	0.0	3.2	2	1	0	2	2	2	0	TOBE	domain
AAA_29	PF13555.6	gi|336254754|ref|YP_004597861.1|	-	0.011	15.4	0.0	0.025	14.3	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|336254754|ref|YP_004597861.1|	-	0.013	14.8	0.1	0.033	13.5	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
AAA_33	PF13671.6	gi|336254754|ref|YP_004597861.1|	-	0.035	14.3	0.4	0.098	12.8	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|336254754|ref|YP_004597861.1|	-	0.036	14.1	0.1	0.097	12.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|336254754|ref|YP_004597861.1|	-	0.047	14.1	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA	PF00004.29	gi|336254754|ref|YP_004597861.1|	-	0.068	13.6	0.5	0.16	12.4	0.5	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|336254754|ref|YP_004597861.1|	-	0.13	12.8	0.0	0.27	11.8	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|336254754|ref|YP_004597861.1|	-	0.27	10.8	2.7	0.91	9.1	0.3	2.7	2	1	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.22	gi|336254755|ref|YP_004597862.1|	-	5.3e-11	42.6	20.9	5.3e-11	42.6	20.9	2.5	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336254756|ref|YP_004597863.1|	-	5.7e-16	58.8	21.4	5.7e-16	58.8	21.4	2.9	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ThiW	PF09512.10	gi|336254756|ref|YP_004597863.1|	-	0.2	11.7	12.1	0.087	12.9	5.5	2.5	2	0	0	2	2	2	0	Thiamine-precursor	transporter	protein	(ThiW)
TraP	PF07296.11	gi|336254756|ref|YP_004597863.1|	-	0.3	10.2	3.1	1.3	8.2	0.3	2.2	2	0	0	2	2	2	0	TraP	protein
SBP_bac_8	PF13416.6	gi|336254757|ref|YP_004597864.1|	-	4.4e-19	69.4	0.2	6.7e-19	68.8	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336254757|ref|YP_004597864.1|	-	4.9e-10	39.9	0.6	1.7e-09	38.1	0.6	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Regulator_TrmB	PF11495.8	gi|336254758|ref|YP_004597865.1|	-	1e-66	224.5	0.7	1.4e-66	224.0	0.4	1.4	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|336254758|ref|YP_004597865.1|	-	1.2e-20	73.1	0.0	3.1e-20	71.8	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336254758|ref|YP_004597865.1|	-	1.5e-06	27.9	0.1	5.7e-06	26.1	0.1	1.9	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336254758|ref|YP_004597865.1|	-	5.8e-06	26.3	0.3	4e-05	23.6	0.1	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336254758|ref|YP_004597865.1|	-	5.2e-05	23.0	0.2	0.00019	21.2	0.1	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336254758|ref|YP_004597865.1|	-	0.00026	20.5	0.1	0.0055	16.2	0.0	2.7	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336254758|ref|YP_004597865.1|	-	0.00053	19.8	0.0	0.0037	17.1	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_CodY	PF08222.11	gi|336254758|ref|YP_004597865.1|	-	0.0022	17.5	0.0	0.0076	15.8	0.0	2.0	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
Rrf2	PF02082.20	gi|336254758|ref|YP_004597865.1|	-	0.0057	17.0	0.0	0.012	15.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
DUF2250	PF10007.9	gi|336254758|ref|YP_004597865.1|	-	0.031	14.4	0.0	0.13	12.4	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR	PF01047.22	gi|336254758|ref|YP_004597865.1|	-	0.062	13.2	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|336254758|ref|YP_004597865.1|	-	0.075	13.0	0.0	0.18	11.8	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_9	PF08221.11	gi|336254758|ref|YP_004597865.1|	-	0.11	12.6	0.0	0.26	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_37	PF13744.6	gi|336254758|ref|YP_004597865.1|	-	0.13	12.3	0.0	0.4	10.7	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336254758|ref|YP_004597865.1|	-	0.18	11.9	0.4	9.7	6.3	0.0	3.4	3	1	1	4	4	4	0	Winged	helix-turn	helix
MS_channel	PF00924.18	gi|336254759|ref|YP_004597866.1|	-	3.3e-35	121.5	0.4	4.6e-35	121.0	0.4	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|336254759|ref|YP_004597866.1|	-	0.00082	19.3	2.8	0.00082	19.3	2.8	2.0	3	0	0	3	3	3	1	Conserved	TM	helix
EI24	PF07264.11	gi|336254759|ref|YP_004597866.1|	-	0.0036	17.6	1.3	0.01	16.1	1.2	1.7	1	1	1	2	2	2	1	Etoposide-induced	protein	2.4	(EI24)
DUF3611	PF12263.8	gi|336254759|ref|YP_004597866.1|	-	0.068	13.1	5.8	0.11	12.4	5.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3611)
IncE	PF17627.2	gi|336254759|ref|YP_004597866.1|	-	0.29	11.1	3.3	0.48	10.4	3.3	1.3	1	0	0	1	1	1	0	Inclusion	membrane	protein	E
Usp	PF00582.26	gi|336254760|ref|YP_004597867.1|	-	8.4e-32	110.6	1.4	9.4e-32	110.5	1.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.26	gi|336254761|ref|YP_004597868.1|	-	1.5e-10	41.7	1.4	6.3e-09	36.5	1.4	2.1	1	1	0	1	1	1	1	Universal	stress	protein	family
DUF1803	PF08820.10	gi|336254761|ref|YP_004597868.1|	-	0.12	12.4	0.1	0.31	11.1	0.1	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1803)
zf-FPG_IleRS	PF06827.14	gi|336254762|ref|YP_004597869.1|	-	0.14	12.1	3.7	1.9	8.4	0.5	2.3	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
CLIP1_ZNF	PF16641.5	gi|336254762|ref|YP_004597869.1|	-	0.16	11.9	1.0	0.16	11.9	1.0	1.9	2	0	0	2	2	2	0	CLIP1	zinc	knuckle
Aminotran_5	PF00266.19	gi|336254764|ref|YP_004597871.1|	-	1.9e-33	116.0	0.0	2.4e-33	115.6	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|336254764|ref|YP_004597871.1|	-	0.00069	18.3	0.0	0.00098	17.7	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|336254764|ref|YP_004597871.1|	-	0.00092	18.6	0.2	0.0015	17.9	0.2	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
YdjM	PF04307.14	gi|336254765|ref|YP_004597872.1|	-	9.1e-15	54.4	22.8	9.1e-15	54.4	22.8	2.9	1	1	0	2	2	2	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF2238	PF09997.9	gi|336254766|ref|YP_004597873.1|	-	0.26	11.1	5.9	0.25	11.1	4.7	1.7	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2238)
DUF5336	PF17270.2	gi|336254766|ref|YP_004597873.1|	-	1.5	8.5	19.9	3	7.5	19.9	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5336)
DUF2070	PF09843.9	gi|336254766|ref|YP_004597873.1|	-	2.8	6.1	10.7	3.4	5.8	10.7	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF2238	PF09997.9	gi|336254767|ref|YP_004597874.1|	-	0.00059	19.6	1.9	0.0011	18.8	1.9	1.6	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
Dodecin	PF07311.12	gi|336254768|ref|YP_004597875.1|	-	6.3e-22	77.6	0.1	6.8e-22	77.5	0.1	1.0	1	0	0	1	1	1	1	Dodecin
Fe-S_biosyn	PF01521.20	gi|336254769|ref|YP_004597876.1|	-	1.5e-18	67.0	0.0	1.8e-18	66.8	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
MCPsignal	PF00015.21	gi|336254771|ref|YP_004597878.1|	-	1.7e-45	155.0	54.4	1.9e-41	141.8	26.2	3.7	1	1	3	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS	PF00989.25	gi|336254771|ref|YP_004597878.1|	-	4.9e-13	49.1	0.1	1.7e-12	47.3	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|336254771|ref|YP_004597878.1|	-	1.9e-11	44.1	0.4	6.9e-11	42.3	0.0	2.2	2	1	1	3	3	1	1	PAS	domain
DUF948	PF06103.11	gi|336254771|ref|YP_004597878.1|	-	2.1e-07	31.1	36.9	0.00066	19.9	4.4	5.4	2	2	2	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|336254771|ref|YP_004597878.1|	-	2e-06	27.8	37.9	0.0002	21.4	4.1	4.7	3	2	2	5	5	4	3	Laminin	Domain	II
PAS_4	PF08448.10	gi|336254771|ref|YP_004597878.1|	-	3.1e-06	27.4	2.6	3.9e-05	23.9	2.6	3.0	1	1	0	1	1	1	1	PAS	fold
DUF1664	PF07889.12	gi|336254771|ref|YP_004597878.1|	-	5.1e-06	26.5	27.8	0.0003	20.8	3.8	4.9	2	2	3	5	5	5	3	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|336254771|ref|YP_004597878.1|	-	5.5e-06	26.6	31.0	0.45	10.8	2.0	5.3	2	2	2	5	5	5	3	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PAS_8	PF13188.7	gi|336254771|ref|YP_004597878.1|	-	3.2e-05	23.8	0.0	0.00014	21.8	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
MLTR_LBD	PF17765.1	gi|336254771|ref|YP_004597878.1|	-	0.0021	18.2	0.3	0.0021	18.2	0.3	3.3	3	1	1	4	4	2	1	MmyB-like	transcription	regulator	ligand	binding	domain
ING	PF12998.7	gi|336254771|ref|YP_004597878.1|	-	0.0026	18.3	7.3	0.26	11.9	0.9	3.3	1	1	1	2	2	2	1	Inhibitor	of	growth	proteins	N-terminal	histone-binding
AAA_13	PF13166.6	gi|336254771|ref|YP_004597878.1|	-	0.0027	16.4	30.7	0.008	14.9	13.6	2.1	1	1	0	2	2	2	2	AAA	domain
YkyA	PF10368.9	gi|336254771|ref|YP_004597878.1|	-	0.0028	17.4	33.5	0.021	14.5	13.1	3.2	1	1	2	3	3	3	2	Putative	cell-wall	binding	lipoprotein
Spc7	PF08317.11	gi|336254771|ref|YP_004597878.1|	-	0.0067	15.3	10.9	0.0067	15.3	10.9	3.1	1	1	2	3	3	3	2	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.11	gi|336254771|ref|YP_004597878.1|	-	0.0096	16.5	26.9	0.2	12.2	5.2	4.6	2	2	2	4	4	4	2	Syntaxin	6,	N-terminal
Seryl_tRNA_N	PF02403.22	gi|336254771|ref|YP_004597878.1|	-	0.012	15.8	25.6	0.4	10.9	3.2	4.4	2	2	2	4	4	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Bacillus_HBL	PF05791.11	gi|336254771|ref|YP_004597878.1|	-	0.024	14.5	0.5	0.024	14.5	0.5	3.3	3	1	0	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
T3SSipB	PF16535.5	gi|336254771|ref|YP_004597878.1|	-	0.024	15.1	31.5	0.2	12.1	13.1	2.8	2	0	0	2	2	2	0	Type	III	cell	invasion	protein	SipB
Fib_alpha	PF08702.10	gi|336254771|ref|YP_004597878.1|	-	0.027	14.6	21.8	0.47	10.6	2.8	4.7	2	2	4	6	6	6	0	Fibrinogen	alpha/beta	chain	family
Med30	PF11315.8	gi|336254771|ref|YP_004597878.1|	-	0.053	13.7	9.2	0.094	12.9	2.0	3.2	2	1	1	3	3	3	0	Mediator	complex	subunit	30
PAS_3	PF08447.12	gi|336254771|ref|YP_004597878.1|	-	0.091	13.1	0.2	2.8	8.3	0.2	2.6	1	1	0	1	1	1	0	PAS	fold
Mod_r	PF07200.13	gi|336254771|ref|YP_004597878.1|	-	0.092	12.8	19.0	2.4	8.2	4.3	3.5	2	2	1	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
KxDL	PF10241.9	gi|336254771|ref|YP_004597878.1|	-	0.097	13.0	2.4	17	5.8	0.1	3.5	2	1	1	3	3	2	0	Uncharacterized	conserved	protein
FH2	PF02181.23	gi|336254771|ref|YP_004597878.1|	-	0.11	11.5	10.4	3.7	6.6	0.7	3.4	3	1	0	3	3	3	0	Formin	Homology	2	Domain
Sec34	PF04136.15	gi|336254771|ref|YP_004597878.1|	-	0.18	11.7	17.0	12	5.8	0.1	4.5	2	2	4	6	6	6	0	Sec34-like	family
Syntaxin_2	PF14523.6	gi|336254771|ref|YP_004597878.1|	-	0.21	12.0	12.1	4.1	7.8	1.3	4.4	2	2	1	3	3	3	0	Syntaxin-like	protein
ApoLp-III	PF07464.11	gi|336254771|ref|YP_004597878.1|	-	0.22	11.6	31.7	1.6	8.8	11.8	4.3	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
PAS_7	PF12860.7	gi|336254771|ref|YP_004597878.1|	-	0.23	11.6	7.1	0.49	10.6	0.1	4.0	3	2	1	4	4	4	0	PAS	fold
FlgN	PF05130.12	gi|336254771|ref|YP_004597878.1|	-	0.32	11.5	27.2	0.7	10.4	8.7	4.0	1	1	3	4	4	4	0	FlgN	protein
Not3	PF04065.15	gi|336254771|ref|YP_004597878.1|	-	0.43	10.0	24.6	1.3	8.4	7.6	3.1	1	1	2	3	3	3	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
Nup88	PF10168.9	gi|336254771|ref|YP_004597878.1|	-	0.51	8.1	16.8	0.034	12.0	4.9	2.2	2	0	0	2	2	2	0	Nuclear	pore	component
Sec5	PF15469.6	gi|336254771|ref|YP_004597878.1|	-	0.54	10.0	7.8	0.4	10.5	4.9	2.2	1	1	1	2	2	2	0	Exocyst	complex	component	Sec5
PhaP_Bmeg	PF09602.10	gi|336254771|ref|YP_004597878.1|	-	0.64	9.9	16.1	0.12	12.3	3.0	3.3	1	1	2	3	3	3	0	Polyhydroxyalkanoic	acid	inclusion	protein	(PhaP_Bmeg)
Nmad5	PF18757.1	gi|336254771|ref|YP_004597878.1|	-	0.81	9.9	18.9	0.73	10.0	0.6	3.7	1	1	3	4	4	4	0	Nucleotide	modification	associated	domain	5
DUF3450	PF11932.8	gi|336254771|ref|YP_004597878.1|	-	0.88	8.8	33.3	1	8.6	2.8	3.9	1	1	4	5	5	5	0	Protein	of	unknown	function	(DUF3450)
Tup_N	PF08581.10	gi|336254771|ref|YP_004597878.1|	-	0.9	9.9	8.8	2.1	8.7	0.2	3.3	2	1	1	3	3	3	0	Tup	N-terminal
DUF3584	PF12128.8	gi|336254771|ref|YP_004597878.1|	-	1.1	6.7	39.4	1.3	6.4	17.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
DUF745	PF05335.13	gi|336254771|ref|YP_004597878.1|	-	1.1	8.9	36.5	0.65	9.7	10.7	3.5	2	1	1	4	4	4	0	Protein	of	unknown	function	(DUF745)
UPF0242	PF06785.11	gi|336254771|ref|YP_004597878.1|	-	1.2	9.3	25.4	1.8	8.6	1.7	3.9	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|336254771|ref|YP_004597878.1|	-	1.5	9.4	24.9	17	6.0	7.4	5.0	2	2	1	3	3	3	0	Protein	of	unknown	function	DUF16
TMPIT	PF07851.13	gi|336254771|ref|YP_004597878.1|	-	1.5	8.0	15.2	8.5	5.5	2.9	3.1	1	1	1	2	2	2	0	TMPIT-like	protein
CREPT	PF16566.5	gi|336254771|ref|YP_004597878.1|	-	1.8	8.7	16.4	0.57	10.4	3.7	3.0	2	1	0	3	3	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Herpes_U30	PF04523.13	gi|336254771|ref|YP_004597878.1|	-	2	6.2	9.6	0.64	7.8	0.7	2.2	1	1	0	2	2	2	0	Herpes	virus	tegument	protein	U30
AIP3	PF03915.13	gi|336254771|ref|YP_004597878.1|	-	2.2	7.3	24.9	2.3	7.2	9.3	2.5	1	1	1	2	2	2	0	Actin	interacting	protein	3
DASH_Dam1	PF08653.10	gi|336254771|ref|YP_004597878.1|	-	2.4	8.0	7.7	25	4.8	0.3	4.5	5	1	0	5	5	4	0	DASH	complex	subunit	Dam1
Kre28	PF17097.5	gi|336254771|ref|YP_004597878.1|	-	2.5	7.0	29.2	2.3	7.1	10.1	3.2	1	1	2	3	3	3	0	Spindle	pole	body	component
CorA	PF01544.18	gi|336254771|ref|YP_004597878.1|	-	2.5	7.3	25.6	0.9	8.8	6.0	3.1	1	1	2	3	3	3	0	CorA-like	Mg2+	transporter	protein
DUF4795	PF16043.5	gi|336254771|ref|YP_004597878.1|	-	2.7	7.5	25.9	1	8.9	6.6	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
Spectrin	PF00435.21	gi|336254771|ref|YP_004597878.1|	-	3.2	8.3	27.9	2.4	8.7	7.2	5.2	1	1	5	6	6	6	0	Spectrin	repeat
Gp-FAR-1	PF05823.12	gi|336254771|ref|YP_004597878.1|	-	3.4	8.0	7.5	5.1	7.4	1.0	2.8	1	1	1	2	2	2	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
BORCS7	PF16088.5	gi|336254771|ref|YP_004597878.1|	-	3.8	7.8	11.8	0.96	9.7	3.4	2.9	2	1	0	2	2	2	0	BLOC-1-related	complex	sub-unit	7
Goodbye	PF17109.5	gi|336254771|ref|YP_004597878.1|	-	4	7.9	10.4	16	6.0	1.2	3.9	2	2	0	2	2	2	0	fungal	STAND	N-terminal	Goodbye	domain
FUSC	PF04632.12	gi|336254771|ref|YP_004597878.1|	-	4	5.9	25.7	3.2	6.2	21.4	2.5	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Hormone_1	PF00103.20	gi|336254771|ref|YP_004597878.1|	-	5.5	6.7	8.7	8.7	6.0	0.2	3.3	3	0	0	3	3	3	0	Somatotropin	hormone	family
IFT20	PF14931.6	gi|336254771|ref|YP_004597878.1|	-	5.9	7.1	18.2	1.1	9.5	3.2	4.6	2	2	2	4	4	4	0	Intraflagellar	transport	complex	B,	subunit	20
APG17	PF04108.12	gi|336254771|ref|YP_004597878.1|	-	6.5	5.8	38.2	1.1	8.4	10.4	3.6	1	1	2	3	3	3	0	Autophagy	protein	Apg17
Laminin_I	PF06008.14	gi|336254771|ref|YP_004597878.1|	-	7.3	6.2	32.9	4.7	6.8	9.2	3.6	2	2	1	3	3	3	0	Laminin	Domain	I
Prominin	PF05478.11	gi|336254771|ref|YP_004597878.1|	-	8.3	4.2	13.7	11	3.8	8.7	2.1	1	1	1	2	2	2	0	Prominin
LUC7	PF03194.15	gi|336254771|ref|YP_004597878.1|	-	8.7	5.9	27.3	0.18	11.4	5.7	3.4	2	1	1	3	3	3	0	LUC7	N_terminus
Histidinol_dh	PF00815.20	gi|336254772|ref|YP_004597879.1|	-	1.3e-157	525.0	7.3	1.6e-157	524.8	7.3	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
GGDEF_2	PF17853.1	gi|336254772|ref|YP_004597879.1|	-	3.7	7.8	8.2	0.84	9.9	2.0	3.0	3	1	0	3	3	3	0	GGDEF-like	domain
DUF4233	PF14017.6	gi|336254773|ref|YP_004597880.1|	-	0.0064	16.8	3.5	0.0072	16.6	3.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4233)
Trp_oprn_chp	PF09534.10	gi|336254773|ref|YP_004597880.1|	-	0.49	10.2	7.6	0.53	10.1	7.6	1.2	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4032	PF13224.6	gi|336254776|ref|YP_004597883.1|	-	0.0048	16.8	0.2	0.0062	16.4	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4032)
DUF892	PF05974.12	gi|336254777|ref|YP_004597884.1|	-	7.1e-45	152.9	11.4	8e-45	152.7	11.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Ferritin	PF00210.24	gi|336254777|ref|YP_004597884.1|	-	0.00092	19.2	13.3	0.0023	17.9	13.2	1.7	1	1	0	1	1	1	1	Ferritin-like	domain
Vir_act_alpha_C	PF10400.9	gi|336254777|ref|YP_004597884.1|	-	0.13	13.0	8.1	2.1	9.1	0.6	3.1	2	1	0	2	2	2	0	Virulence	activator	alpha	C-term
DUF2383	PF09537.10	gi|336254777|ref|YP_004597884.1|	-	0.21	12.0	4.8	0.92	9.9	0.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
FlgN	PF05130.12	gi|336254777|ref|YP_004597884.1|	-	0.28	11.7	6.6	3.8	8.0	0.5	2.4	2	1	0	2	2	2	0	FlgN	protein
Acetyltransf_1	PF00583.25	gi|336254779|ref|YP_004597886.1|	-	2.1e-18	66.7	0.0	2.6e-18	66.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336254779|ref|YP_004597886.1|	-	3.2e-12	46.5	0.0	3.5e-12	46.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336254779|ref|YP_004597886.1|	-	6.2e-12	45.8	0.0	9.2e-12	45.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336254779|ref|YP_004597886.1|	-	2.4e-08	34.1	0.0	5.4e-08	33.0	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336254779|ref|YP_004597886.1|	-	5.8e-08	32.6	0.0	1.6e-07	31.2	0.0	1.8	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_8	PF13523.6	gi|336254779|ref|YP_004597886.1|	-	0.0022	17.7	0.0	0.0034	17.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336254779|ref|YP_004597886.1|	-	0.011	16.4	0.0	0.016	15.9	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|336254779|ref|YP_004597886.1|	-	0.14	11.7	0.0	0.15	11.6	0.0	1.1	1	0	0	1	1	1	0	GNAT	acetyltransferase
Acetyltransf_4	PF13420.7	gi|336254779|ref|YP_004597886.1|	-	0.18	11.9	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
zf-C2H2_9	PF16293.5	gi|336254780|ref|YP_004597887.1|	-	0.0025	17.6	0.1	0.0048	16.7	0.1	1.4	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
PSK_trans_fac	PF07704.11	gi|336254780|ref|YP_004597887.1|	-	1.2	9.9	5.6	0.45	11.3	2.2	2.0	2	1	0	2	2	2	0	Rv0623-like	transcription	factor
Reductase_C	PF14759.6	gi|336254781|ref|YP_004597888.1|	-	0.1	13.2	1.5	0.19	12.3	0.4	1.8	2	0	0	2	2	2	0	Reductase	C-terminal
NUDIX	PF00293.28	gi|336254782|ref|YP_004597889.1|	-	1.5e-15	57.4	1.5	2.7e-15	56.6	1.5	1.4	1	0	0	1	1	1	1	NUDIX	domain
Rhodanese	PF00581.20	gi|336254783|ref|YP_004597890.1|	-	3.9e-12	46.6	0.0	4.7e-12	46.4	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
SUI1	PF01253.22	gi|336254784|ref|YP_004597891.1|	-	3.9e-22	78.6	0.0	4.7e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|336254784|ref|YP_004597891.1|	-	0.0022	18.3	0.0	0.0028	17.9	0.0	1.4	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.15	gi|336254784|ref|YP_004597891.1|	-	0.0081	15.9	0.4	0.01	15.6	0.4	1.1	1	0	0	1	1	1	1	DTW	domain
Transglut_core	PF01841.19	gi|336254785|ref|YP_004597892.1|	-	1.6e-28	99.4	0.0	3.6e-28	98.2	0.0	1.6	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF4129	PF13559.6	gi|336254785|ref|YP_004597892.1|	-	6.5e-09	35.9	8.1	6.5e-09	35.9	8.1	2.9	3	0	0	3	3	2	1	Domain	of	unknown	function	(DUF4129)
Transglut_core3	PF13471.6	gi|336254785|ref|YP_004597892.1|	-	3.3e-05	23.8	0.2	0.00034	20.5	0.0	2.4	2	0	0	2	2	2	1	Transglutaminase-like	superfamily
DUF3488	PF11992.8	gi|336254785|ref|YP_004597892.1|	-	0.0002	20.4	0.0	0.0002	20.4	0.0	2.8	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF3488)
SPX	PF03105.19	gi|336254785|ref|YP_004597892.1|	-	0.37	10.7	7.7	0.6	10.0	7.7	1.3	1	0	0	1	1	1	0	SPX	domain
Apt1	PF10351.9	gi|336254785|ref|YP_004597892.1|	-	0.45	9.3	3.7	0.62	8.8	3.7	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
SOG2	PF10428.9	gi|336254785|ref|YP_004597892.1|	-	0.89	8.7	4.1	1.5	7.9	4.1	1.3	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
CDC45	PF02724.14	gi|336254785|ref|YP_004597892.1|	-	0.93	7.7	5.6	1.3	7.2	5.6	1.1	1	0	0	1	1	1	0	CDC45-like	protein
Presenilin	PF01080.17	gi|336254785|ref|YP_004597892.1|	-	1.5	7.5	3.8	2.5	6.8	3.8	1.3	1	0	0	1	1	1	0	Presenilin
Trypan_PARP	PF05887.11	gi|336254785|ref|YP_004597892.1|	-	5.9	6.9	14.3	17	5.4	14.3	1.8	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
7tm_3	PF00003.22	gi|336254785|ref|YP_004597892.1|	-	7.3	6.3	7.9	4.3	7.0	5.8	1.7	2	1	0	2	2	2	0	7	transmembrane	sweet-taste	receptor	of	3	GCPR
DUF58	PF01882.18	gi|336254786|ref|YP_004597893.1|	-	6.5e-16	58.4	1.3	4.8e-15	55.6	0.3	2.6	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
AAA_3	PF07726.11	gi|336254787|ref|YP_004597894.1|	-	1.1e-60	203.3	0.1	2.3e-60	202.2	0.1	1.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|336254787|ref|YP_004597894.1|	-	4.9e-18	64.7	3.9	1.4e-17	63.3	3.9	1.8	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|336254787|ref|YP_004597894.1|	-	7.2e-14	52.0	0.0	1.3e-13	51.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|336254787|ref|YP_004597894.1|	-	3.7e-06	27.4	0.0	8.1e-06	26.3	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|336254787|ref|YP_004597894.1|	-	4.1e-05	23.4	0.0	0.0012	18.6	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|336254787|ref|YP_004597894.1|	-	0.00026	20.8	0.0	0.0022	17.8	0.0	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|336254787|ref|YP_004597894.1|	-	0.00034	19.8	0.0	0.00083	18.5	0.0	1.6	1	1	0	1	1	1	1	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|336254787|ref|YP_004597894.1|	-	0.002	17.6	0.0	0.029	13.8	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
MCM_lid	PF17855.1	gi|336254787|ref|YP_004597894.1|	-	0.27	11.7	1.1	0.46	10.9	1.1	1.5	1	0	0	1	1	1	0	MCM	AAA-lid	domain
CSD	PF00313.22	gi|336254788|ref|YP_004597895.1|	-	1.8e-21	75.7	0.3	2e-21	75.6	0.3	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|336254788|ref|YP_004597895.1|	-	0.0086	16.0	0.7	0.011	15.7	0.7	1.4	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.11	gi|336254788|ref|YP_004597895.1|	-	0.017	14.8	1.5	0.026	14.2	1.5	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.8	gi|336254788|ref|YP_004597895.1|	-	0.044	13.7	0.0	0.057	13.4	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
Zn-ribbon_8	PF09723.10	gi|336254789|ref|YP_004597896.1|	-	0.0095	16.0	3.3	0.018	15.2	3.3	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336254789|ref|YP_004597896.1|	-	0.059	13.3	2.7	0.5	10.4	2.7	2.1	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
zf_UBZ	PF18439.1	gi|336254789|ref|YP_004597896.1|	-	0.087	12.4	3.9	2.9	7.6	0.2	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|336254789|ref|YP_004597896.1|	-	0.12	12.4	4.0	0.27	11.3	0.3	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|336254789|ref|YP_004597896.1|	-	0.13	12.2	0.7	0.25	11.3	0.7	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|336254789|ref|YP_004597896.1|	-	0.18	11.3	5.0	3.8	7.1	0.2	2.6	1	1	1	2	2	2	0	TFIIB	zinc-binding
Rubredoxin_2	PF18073.1	gi|336254789|ref|YP_004597896.1|	-	0.22	11.3	5.8	4.1	7.2	1.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Bac_luciferase	PF00296.20	gi|336254791|ref|YP_004597898.1|	-	5e-63	213.4	11.9	6.6e-63	213.0	11.9	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
VitK2_biosynth	PF02621.14	gi|336254791|ref|YP_004597898.1|	-	0.1	12.1	0.0	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	Menaquinone	biosynthesis
Methyltransf_25	PF13649.6	gi|336254792|ref|YP_004597899.1|	-	4e-23	81.9	0.1	6.9e-23	81.2	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336254792|ref|YP_004597899.1|	-	2.5e-21	76.1	0.1	4e-21	75.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254792|ref|YP_004597899.1|	-	2.8e-17	62.9	0.0	3.7e-17	62.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336254792|ref|YP_004597899.1|	-	8.3e-15	54.8	0.0	7.5e-14	51.6	0.0	2.0	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336254792|ref|YP_004597899.1|	-	2.8e-14	53.6	0.0	4.7e-14	52.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254792|ref|YP_004597899.1|	-	5e-12	46.0	0.0	6.5e-12	45.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.16	gi|336254792|ref|YP_004597899.1|	-	1e-06	27.7	0.0	1.3e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MetW	PF07021.12	gi|336254792|ref|YP_004597899.1|	-	0.00021	21.0	0.0	0.00031	20.4	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|336254792|ref|YP_004597899.1|	-	0.0076	15.6	0.0	0.0098	15.2	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_32	PF13679.6	gi|336254792|ref|YP_004597899.1|	-	0.023	14.7	0.0	0.032	14.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|336254792|ref|YP_004597899.1|	-	0.024	14.5	0.2	0.068	13.0	0.2	1.6	1	1	0	1	1	1	0	Hypothetical	methyltransferase
MTS	PF05175.14	gi|336254792|ref|YP_004597899.1|	-	0.026	14.1	0.1	0.041	13.4	0.1	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
zf-NADH-PPase	PF09297.11	gi|336254792|ref|YP_004597899.1|	-	0.04	13.6	0.6	0.37	10.5	0.6	2.4	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336254792|ref|YP_004597899.1|	-	0.08	13.1	0.0	0.22	11.7	0.0	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
Thump_like	PF18096.1	gi|336254792|ref|YP_004597899.1|	-	0.093	12.7	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	THUMP	domain-like
F420_ligase	PF01996.16	gi|336254793|ref|YP_004597900.1|	-	1.6e-61	207.7	0.0	2e-61	207.5	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Hydantoinase_B	PF02538.14	gi|336254794|ref|YP_004597901.1|	-	1.7e-209	696.5	5.7	1.9e-209	696.4	5.7	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|336254795|ref|YP_004597902.1|	-	1.1e-99	333.4	11.7	1.4e-99	333.0	5.3	2.5	3	0	0	3	3	3	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|336254795|ref|YP_004597902.1|	-	1.7e-50	171.2	2.6	4.1e-50	170.0	0.1	2.5	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
IF-2B	PF01008.17	gi|336254796|ref|YP_004597903.1|	-	1.6e-47	162.1	0.2	2.1e-47	161.7	0.2	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
NUDIX	PF00293.28	gi|336254796|ref|YP_004597903.1|	-	2e-09	37.6	0.2	4.7e-09	36.4	0.2	1.6	1	0	0	1	1	1	1	NUDIX	domain
Titin_Z	PF09042.11	gi|336254796|ref|YP_004597903.1|	-	2.3	8.2	8.3	0.15	12.0	1.6	2.6	2	1	0	2	2	2	0	Titin	Z
2-Hacid_dh_C	PF02826.19	gi|336254797|ref|YP_004597904.1|	-	2.1e-53	180.3	0.0	2.6e-53	180.0	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|336254797|ref|YP_004597904.1|	-	3.8e-06	26.6	0.0	5.3e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|336254797|ref|YP_004597904.1|	-	1.3e-05	25.4	0.0	2.1e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox	PF00070.27	gi|336254797|ref|YP_004597904.1|	-	6.6e-05	23.4	0.5	0.0029	18.1	0.2	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.21	gi|336254797|ref|YP_004597904.1|	-	7.9e-05	22.8	0.1	0.00073	19.6	0.0	2.1	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336254797|ref|YP_004597904.1|	-	0.013	16.1	0.0	0.029	15.0	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.18	gi|336254797|ref|YP_004597904.1|	-	0.041	13.8	1.7	0.096	12.6	1.7	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336254797|ref|YP_004597904.1|	-	0.045	13.7	2.6	5.6	6.9	0.4	2.5	2	1	1	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
XdhC_C	PF13478.6	gi|336254797|ref|YP_004597904.1|	-	0.05	14.1	0.2	1.1	9.8	0.0	2.3	2	0	0	2	2	2	0	XdhC	Rossmann	domain
DpaA_N	PF16924.5	gi|336254797|ref|YP_004597904.1|	-	0.12	12.5	0.0	0.27	11.3	0.0	1.6	2	0	0	2	2	2	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
IlvN	PF07991.12	gi|336254797|ref|YP_004597904.1|	-	0.13	11.8	0.0	0.2	11.2	0.0	1.2	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Acetyltransf_10	PF13673.7	gi|336254798|ref|YP_004597905.1|	-	1.6e-14	53.9	0.0	2.4e-14	53.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|336254798|ref|YP_004597905.1|	-	1.1e-12	48.2	0.0	1.4e-12	47.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336254798|ref|YP_004597905.1|	-	4.6e-10	39.8	0.0	7.4e-10	39.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336254798|ref|YP_004597905.1|	-	7.3e-06	25.9	0.0	1.6e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|336254798|ref|YP_004597905.1|	-	5e-05	23.4	0.0	0.0003	20.9	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336254798|ref|YP_004597905.1|	-	0.00093	19.4	0.0	0.0038	17.4	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
NUDIX	PF00293.28	gi|336254799|ref|YP_004597906.1|	-	6.3e-11	42.4	0.1	1e-10	41.8	0.1	1.4	1	1	0	1	1	1	1	NUDIX	domain
GrpB	PF04229.14	gi|336254800|ref|YP_004597907.1|	-	4.2e-50	170.0	0.2	4.9e-50	169.8	0.2	1.0	1	0	0	1	1	1	1	GrpB	protein
TPR_14	PF13428.6	gi|336254800|ref|YP_004597907.1|	-	0.13	13.2	1.2	2.1	9.4	0.2	2.9	1	1	1	2	2	2	0	Tetratricopeptide	repeat
DGC	PF08859.11	gi|336254801|ref|YP_004597908.1|	-	5.2e-33	113.3	0.4	6e-33	113.1	0.4	1.0	1	0	0	1	1	1	1	DGC	domain
MMR_HSR1	PF01926.23	gi|336254802|ref|YP_004597909.1|	-	9.7e-20	70.8	0.0	1.6e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|336254802|ref|YP_004597909.1|	-	1.2e-13	50.9	0.2	2.5e-12	46.6	0.2	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|336254802|ref|YP_004597909.1|	-	8.6e-07	28.7	0.3	2.5e-05	23.9	0.3	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|336254802|ref|YP_004597909.1|	-	7.1e-05	22.8	0.2	0.049	13.5	0.1	2.5	2	1	0	2	2	2	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|336254802|ref|YP_004597909.1|	-	0.00081	19.5	0.0	0.033	14.3	0.0	2.2	1	1	1	2	2	2	1	Dynamin	family
ATP_bind_1	PF03029.17	gi|336254802|ref|YP_004597909.1|	-	0.00083	19.2	1.1	0.055	13.2	0.1	2.5	2	1	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Roc	PF08477.13	gi|336254802|ref|YP_004597909.1|	-	0.0019	18.4	0.1	0.013	15.7	0.0	2.1	2	1	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
RBD-FIP	PF09457.10	gi|336254802|ref|YP_004597909.1|	-	0.0026	17.6	0.3	0.0059	16.5	0.3	1.5	1	0	0	1	1	1	1	FIP	domain
ABC_tran	PF00005.27	gi|336254802|ref|YP_004597909.1|	-	0.0031	18.0	0.0	0.0041	17.6	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter
AIG1	PF04548.16	gi|336254802|ref|YP_004597909.1|	-	0.0047	16.3	0.0	0.0071	15.7	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
MeaB	PF03308.16	gi|336254802|ref|YP_004597909.1|	-	0.012	14.6	0.3	2.4	7.1	0.0	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_18	PF13238.6	gi|336254802|ref|YP_004597909.1|	-	0.016	15.8	0.0	0.032	14.8	0.0	1.6	1	1	1	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|336254802|ref|YP_004597909.1|	-	0.044	14.1	0.3	0.61	10.4	0.2	2.7	1	1	1	2	2	2	0	AAA	domain
Ras	PF00071.22	gi|336254802|ref|YP_004597909.1|	-	0.044	13.4	0.0	0.12	11.9	0.0	1.7	2	0	0	2	2	2	0	Ras	family
Arf	PF00025.21	gi|336254802|ref|YP_004597909.1|	-	0.064	12.7	0.0	3.4	7.1	0.0	2.3	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
AAA_24	PF13479.6	gi|336254802|ref|YP_004597909.1|	-	0.15	11.8	0.0	0.49	10.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|336254802|ref|YP_004597909.1|	-	0.15	11.8	0.0	0.29	10.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF389	PF04087.14	gi|336254803|ref|YP_004597910.1|	-	1.3e-34	119.2	17.9	1.3e-34	119.2	17.9	2.3	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
HPP	PF04982.13	gi|336254803|ref|YP_004597910.1|	-	2	8.6	22.8	1.6	9.0	1.6	2.5	1	1	1	2	2	2	0	HPP	family
DUF4536	PF15055.6	gi|336254804|ref|YP_004597911.1|	-	0.6	10.4	5.6	0.47	10.7	3.5	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4536)
NOG1_N	PF17835.1	gi|336254805|ref|YP_004597912.1|	-	2.3e-44	151.2	0.2	3.2e-44	150.7	0.2	1.2	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
NOG1	PF06858.14	gi|336254805|ref|YP_004597912.1|	-	7.2e-22	76.9	0.0	1.5e-21	75.9	0.0	1.6	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.23	gi|336254805|ref|YP_004597912.1|	-	1.2e-18	67.2	0.0	2.2e-18	66.4	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|336254805|ref|YP_004597912.1|	-	3.1e-09	36.5	0.0	5.6e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|336254805|ref|YP_004597912.1|	-	0.0034	17.4	0.0	0.0085	16.1	0.0	1.6	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
Dynamin_N	PF00350.23	gi|336254805|ref|YP_004597912.1|	-	0.0065	16.5	1.5	3.8	7.6	0.0	3.0	2	1	1	3	3	3	2	Dynamin	family
RsgA_GTPase	PF03193.16	gi|336254805|ref|YP_004597912.1|	-	0.0066	16.4	0.0	0.022	14.7	0.0	1.8	1	1	0	1	1	1	1	RsgA	GTPase
APP_E2	PF12925.7	gi|336254805|ref|YP_004597912.1|	-	0.01	15.6	0.1	0.017	14.9	0.1	1.3	1	0	0	1	1	1	0	E2	domain	of	amyloid	precursor	protein
AIG1	PF04548.16	gi|336254805|ref|YP_004597912.1|	-	0.022	14.1	0.0	0.043	13.1	0.0	1.5	1	0	0	1	1	1	0	AIG1	family
DUF5518	PF17647.1	gi|336254806|ref|YP_004597913.1|	-	1.8e-16	60.4	49.3	2e-16	60.2	49.3	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Ldr_toxin	PF13940.6	gi|336254806|ref|YP_004597913.1|	-	0.65	10.1	5.3	0.43	10.7	1.5	2.5	1	1	1	2	2	2	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
DUF326	PF03860.16	gi|336254807|ref|YP_004597914.1|	-	1.4e-09	37.6	47.5	0.00015	21.6	5.2	4.7	4	1	0	4	4	4	4	Domain	of	Unknown	Function	(DUF326)
Helicase_IV_N	PF12462.8	gi|336254807|ref|YP_004597914.1|	-	0.18	11.7	0.3	0.29	11.1	0.0	1.5	2	0	0	2	2	2	0	DNA	helicase	IV	/	RNA	helicase	N	terminal
PRA-PH	PF01503.17	gi|336254808|ref|YP_004597915.1|	-	1.3e-17	64.0	2.5	1.5e-17	63.8	2.5	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.17	gi|336254808|ref|YP_004597915.1|	-	0.0001	22.4	3.8	0.00015	21.9	3.8	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
DUF3839	PF12943.7	gi|336254808|ref|YP_004597915.1|	-	0.076	12.4	0.1	0.076	12.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3839)
DNase-RNase	PF02577.14	gi|336254809|ref|YP_004597916.1|	-	4.6e-38	129.8	0.0	5.1e-38	129.6	0.0	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
SNO	PF01174.19	gi|336254810|ref|YP_004597917.1|	-	1.6e-44	152.1	0.0	2.9e-44	151.2	0.0	1.4	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|336254810|ref|YP_004597917.1|	-	3e-09	36.7	0.0	6.2e-09	35.7	0.0	1.5	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|336254810|ref|YP_004597917.1|	-	0.00056	19.6	0.0	0.00081	19.1	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.24	gi|336254810|ref|YP_004597917.1|	-	0.00062	19.6	0.1	0.00094	19.0	0.1	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
BPL_N	PF09825.9	gi|336254810|ref|YP_004597917.1|	-	0.0071	15.5	0.0	0.041	13.0	0.0	1.9	2	0	0	2	2	2	1	Biotin-protein	ligase,	N	terminal
GATase	PF00117.28	gi|336254810|ref|YP_004597917.1|	-	0.026	14.3	0.0	5.5	6.7	0.0	2.1	2	0	0	2	2	2	0	Glutamine	amidotransferase	class-I
Sec61_beta	PF03911.16	gi|336254811|ref|YP_004597918.1|	-	3.1e-17	62.3	0.1	4.2e-17	61.9	0.1	1.2	1	0	0	1	1	1	1	Sec61beta	family
Thioredoxin	PF00085.20	gi|336254812|ref|YP_004597919.1|	-	5.7e-22	77.6	0.0	6.6e-22	77.5	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336254812|ref|YP_004597919.1|	-	4.3e-08	33.6	0.3	6.4e-07	29.8	0.3	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|336254812|ref|YP_004597919.1|	-	3.1e-06	27.4	0.0	0.0046	17.2	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
TraF	PF13728.6	gi|336254812|ref|YP_004597919.1|	-	4.2e-05	23.5	0.0	4.2e-05	23.5	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|336254812|ref|YP_004597919.1|	-	0.0001	22.3	0.0	0.00012	22.1	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|336254812|ref|YP_004597919.1|	-	0.00014	21.6	0.0	0.00016	21.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DUF836	PF05768.14	gi|336254812|ref|YP_004597919.1|	-	0.00016	22.0	0.1	0.00021	21.6	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Redoxin	PF08534.10	gi|336254812|ref|YP_004597919.1|	-	0.0012	18.5	0.3	0.095	12.4	0.1	2.0	1	1	1	2	2	2	2	Redoxin
Thioredoxin_5	PF13743.6	gi|336254812|ref|YP_004597919.1|	-	0.0013	18.4	0.0	0.0014	18.4	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
KaiB	PF07689.12	gi|336254812|ref|YP_004597919.1|	-	0.0017	18.0	0.0	0.0021	17.8	0.0	1.2	1	0	0	1	1	1	1	KaiB	domain
DSBA	PF01323.20	gi|336254812|ref|YP_004597919.1|	-	0.0024	17.7	0.1	0.027	14.2	0.0	1.9	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
AhpC-TSA	PF00578.21	gi|336254812|ref|YP_004597919.1|	-	0.003	17.5	0.1	0.0058	16.5	0.1	1.4	1	1	0	1	1	1	1	AhpC/TSA	family
Glutaredoxin	PF00462.24	gi|336254812|ref|YP_004597919.1|	-	0.0098	16.1	0.1	0.024	14.8	0.0	1.7	1	1	1	2	2	2	1	Glutaredoxin
HyaE	PF07449.11	gi|336254812|ref|YP_004597919.1|	-	0.077	13.0	0.0	0.098	12.6	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
F420_oxidored	PF03807.17	gi|336254813|ref|YP_004597920.1|	-	4.9e-17	62.3	0.0	8.3e-17	61.6	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|336254813|ref|YP_004597920.1|	-	0.0018	18.5	0.0	0.0038	17.4	0.0	1.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|336254813|ref|YP_004597920.1|	-	0.0032	17.9	0.1	0.0047	17.4	0.1	1.5	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|336254813|ref|YP_004597920.1|	-	0.0032	17.1	0.0	0.0049	16.5	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
PDH	PF02153.17	gi|336254813|ref|YP_004597920.1|	-	0.033	13.2	0.1	0.057	12.4	0.1	1.3	1	0	0	1	1	1	0	Prephenate	dehydrogenase
CoA_binding	PF02629.19	gi|336254813|ref|YP_004597920.1|	-	0.034	14.8	0.0	0.12	13.1	0.0	2.0	2	0	0	2	2	2	0	CoA	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336254813|ref|YP_004597920.1|	-	0.064	13.2	0.0	0.13	12.2	0.0	1.5	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CARDB	PF07705.11	gi|336254814|ref|YP_004597921.1|	-	1e-05	25.7	0.0	0.027	14.7	0.0	2.6	2	0	0	2	2	2	2	CARDB
DUF11	PF01345.18	gi|336254814|ref|YP_004597921.1|	-	0.00059	20.1	1.2	1.8	8.9	0.1	3.4	3	0	0	3	3	3	2	Domain	of	unknown	function	DUF11
DUF4352	PF11611.8	gi|336254814|ref|YP_004597921.1|	-	0.0043	17.3	0.0	6.5	7.1	0.0	3.1	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4352)
DUF3052	PF11253.8	gi|336254815|ref|YP_004597922.1|	-	0.03	14.2	0.7	0.041	13.8	0.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3052)
dCache_1	PF02743.18	gi|336254815|ref|YP_004597922.1|	-	0.083	12.7	0.3	0.096	12.5	0.3	1.0	1	0	0	1	1	1	0	Cache	domain
Nup192	PF11894.8	gi|336254815|ref|YP_004597922.1|	-	0.28	8.3	0.2	0.33	8.0	0.2	1.0	1	0	0	1	1	1	0	Nuclear	pore	complex	scaffold,	nucleoporins	186/192/205
DUF4404	PF14357.6	gi|336254815|ref|YP_004597922.1|	-	0.68	10.6	4.5	1	10.0	4.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
GDPD	PF03009.17	gi|336254816|ref|YP_004597923.1|	-	1.8e-24	86.9	0.0	2.9e-24	86.2	0.0	1.3	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.6	gi|336254816|ref|YP_004597923.1|	-	0.016	15.6	0.5	0.037	14.5	0.5	1.6	1	0	0	1	1	1	0	Glycerophosphoryl	diester	phosphodiesterase	family
Response_reg	PF00072.24	gi|336254817|ref|YP_004597924.1|	-	3.6e-18	65.7	0.0	4.4e-18	65.5	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Hydrolase	PF00702.26	gi|336254818|ref|YP_004597925.1|	-	6.1e-11	43.0	0.7	2e-10	41.3	0.7	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|336254818|ref|YP_004597925.1|	-	1.1e-08	35.4	0.0	3.8e-07	30.4	0.0	2.2	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336254818|ref|YP_004597925.1|	-	6.6e-07	29.3	0.1	2.1e-06	27.7	0.1	1.9	1	1	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|336254818|ref|YP_004597925.1|	-	5.3e-05	23.7	4.3	0.00018	22.0	0.9	2.2	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
NIF	PF03031.18	gi|336254818|ref|YP_004597925.1|	-	0.015	15.0	0.0	0.46	10.3	0.0	2.2	2	0	0	2	2	2	0	NLI	interacting	factor-like	phosphatase
HD_3	PF13023.6	gi|336254819|ref|YP_004597926.1|	-	0.00042	20.3	0.0	0.00052	20.0	0.0	1.2	1	0	0	1	1	1	1	HD	domain
HD_2	PF12917.7	gi|336254819|ref|YP_004597926.1|	-	0.00083	19.2	0.0	0.0012	18.6	0.0	1.3	1	0	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.22	gi|336254819|ref|YP_004597926.1|	-	0.01	16.0	0.1	0.014	15.7	0.1	1.4	1	0	0	1	1	1	0	HD	domain
UPF0146	PF03686.13	gi|336254820|ref|YP_004597927.1|	-	1.4e-29	102.6	0.2	1.6e-29	102.4	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
Nucleotid_trans	PF03407.16	gi|336254820|ref|YP_004597927.1|	-	0.039	13.9	0.0	4	7.4	0.0	2.0	2	0	0	2	2	2	0	Nucleotide-diphospho-sugar	transferase
HEM4	PF02602.15	gi|336254820|ref|YP_004597927.1|	-	0.067	12.5	0.1	0.07	12.5	0.1	1.2	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
Peptidase_M54	PF07998.11	gi|336254821|ref|YP_004597928.1|	-	6.6e-22	78.5	0.0	7.9e-22	78.2	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M54
Reprolysin_4	PF13583.6	gi|336254821|ref|YP_004597928.1|	-	3.2e-06	26.9	0.0	4e-06	26.6	0.0	1.0	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.6	gi|336254821|ref|YP_004597928.1|	-	0.00018	21.5	0.0	0.00024	21.1	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.24	gi|336254821|ref|YP_004597928.1|	-	0.00038	20.3	0.0	0.00042	20.2	0.0	1.3	1	0	0	1	1	1	1	Matrixin
Reprolysin_5	PF13688.6	gi|336254821|ref|YP_004597928.1|	-	0.0011	19.2	0.0	0.0012	19.0	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Reprolysin_3	PF13582.6	gi|336254821|ref|YP_004597928.1|	-	0.0012	19.3	0.0	0.0016	19.0	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M66	PF10462.9	gi|336254821|ref|YP_004597928.1|	-	0.0056	15.7	0.0	0.0075	15.3	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M66
DUF4953	PF16313.5	gi|336254821|ref|YP_004597928.1|	-	0.012	14.9	0.0	0.018	14.3	0.0	1.2	1	0	0	1	1	1	0	Met-zincin
Zincin_1	PF06262.11	gi|336254821|ref|YP_004597928.1|	-	0.081	13.0	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	Zincin-like	metallopeptidase
Methyltransf_11	PF08241.12	gi|336254822|ref|YP_004597929.1|	-	1.5e-12	48.0	0.1	3.1e-12	47.0	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336254822|ref|YP_004597929.1|	-	6.6e-08	33.1	0.1	3.1e-07	31.0	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336254822|ref|YP_004597929.1|	-	4.1e-07	30.0	0.0	7.7e-07	29.1	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336254822|ref|YP_004597929.1|	-	9e-05	23.2	0.0	0.00025	21.7	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336254822|ref|YP_004597929.1|	-	0.0034	17.2	0.0	0.0058	16.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336254822|ref|YP_004597929.1|	-	0.004	16.5	0.0	0.0077	15.6	0.0	1.5	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|336254822|ref|YP_004597929.1|	-	0.0046	16.8	0.0	0.0065	16.4	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
PASTA	PF03793.19	gi|336254822|ref|YP_004597929.1|	-	0.067	13.1	0.0	0.73	9.7	0.0	2.2	2	0	0	2	2	2	0	PASTA	domain
N6_N4_Mtase	PF01555.18	gi|336254822|ref|YP_004597929.1|	-	0.084	12.6	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	DNA	methylase
ABC_tran	PF00005.27	gi|336254823|ref|YP_004597930.1|	-	6.7e-42	143.3	0.0	1.7e-21	77.2	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|336254823|ref|YP_004597930.1|	-	5.5e-13	48.9	8.6	8.9e-05	22.0	1.0	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|336254823|ref|YP_004597930.1|	-	3.8e-12	45.8	1.4	7.6e-12	44.9	1.4	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_21	PF13304.6	gi|336254823|ref|YP_004597930.1|	-	4.6e-12	46.3	0.4	0.083	12.7	0.0	4.2	4	0	0	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|336254823|ref|YP_004597930.1|	-	1.2e-07	32.3	0.6	0.0098	16.3	0.0	3.3	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336254823|ref|YP_004597930.1|	-	2.8e-06	27.7	0.2	0.0073	16.6	0.0	3.0	2	2	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|336254823|ref|YP_004597930.1|	-	3.4e-06	27.7	1.7	0.066	13.7	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA	PF00004.29	gi|336254823|ref|YP_004597930.1|	-	1.1e-05	25.8	0.0	0.03	14.8	0.0	2.8	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|336254823|ref|YP_004597930.1|	-	5.9e-05	22.9	0.0	0.069	12.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Rad17	PF03215.15	gi|336254823|ref|YP_004597930.1|	-	6.1e-05	23.0	0.0	0.16	11.9	0.0	2.8	2	1	1	3	3	3	2	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|336254823|ref|YP_004597930.1|	-	9.4e-05	22.8	0.0	0.61	10.5	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_33	PF13671.6	gi|336254823|ref|YP_004597930.1|	-	0.00018	21.7	0.0	0.39	10.9	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|336254823|ref|YP_004597930.1|	-	0.00038	20.4	0.0	0.73	9.7	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
AAA_14	PF13173.6	gi|336254823|ref|YP_004597930.1|	-	0.00048	20.2	0.1	2.6	8.1	0.0	3.6	3	1	0	3	3	3	1	AAA	domain
Fer4	PF00037.27	gi|336254823|ref|YP_004597930.1|	-	0.00057	19.6	1.6	0.00057	19.6	1.6	2.7	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|336254823|ref|YP_004597930.1|	-	0.0017	18.3	12.2	0.0086	16.1	2.1	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_29	PF13555.6	gi|336254823|ref|YP_004597930.1|	-	0.0019	17.9	0.4	1.5	8.6	0.1	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|336254823|ref|YP_004597930.1|	-	0.0024	17.7	0.8	0.63	9.7	0.2	2.6	2	1	0	3	3	3	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|336254823|ref|YP_004597930.1|	-	0.0025	17.7	0.0	3	7.7	0.0	2.7	2	0	0	2	2	2	1	NACHT	domain
RuvB_N	PF05496.12	gi|336254823|ref|YP_004597930.1|	-	0.0032	17.2	0.2	1.8	8.3	0.1	3.0	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_18	PF13238.6	gi|336254823|ref|YP_004597930.1|	-	0.0046	17.5	0.0	3.2	8.3	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|336254823|ref|YP_004597930.1|	-	0.012	14.9	0.0	0.9	8.7	0.0	2.4	2	0	0	2	2	2	0	NB-ARC	domain
AAA_25	PF13481.6	gi|336254823|ref|YP_004597930.1|	-	0.02	14.5	0.7	13	5.3	0.0	3.5	3	0	0	3	3	3	0	AAA	domain
AAA_28	PF13521.6	gi|336254823|ref|YP_004597930.1|	-	0.023	15.0	0.2	5	7.3	0.0	3.3	3	0	0	3	3	3	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336254823|ref|YP_004597930.1|	-	0.043	13.9	0.5	0.93	9.6	0.1	2.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Fer4_7	PF12838.7	gi|336254823|ref|YP_004597930.1|	-	0.045	14.3	11.1	0.099	13.2	11.1	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_5	PF07728.14	gi|336254823|ref|YP_004597930.1|	-	0.049	13.6	0.1	11	6.0	0.0	2.9	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
DUF87	PF01935.17	gi|336254823|ref|YP_004597930.1|	-	0.051	13.7	0.5	18	5.3	0.0	3.3	3	1	0	3	3	3	0	Helicase	HerA,	central	domain
SRP54	PF00448.22	gi|336254823|ref|YP_004597930.1|	-	0.081	12.6	0.2	5.8	6.5	0.0	2.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|336254823|ref|YP_004597930.1|	-	0.1	12.3	0.2	8.3	6.1	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
NTPase_1	PF03266.15	gi|336254823|ref|YP_004597930.1|	-	0.12	12.2	3.1	14	5.6	0.0	3.3	4	0	0	4	4	4	0	NTPase
CLP1_P	PF16575.5	gi|336254823|ref|YP_004597930.1|	-	0.14	12.0	0.0	6.2	6.6	0.0	2.5	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
Fer4_10	PF13237.6	gi|336254823|ref|YP_004597930.1|	-	0.21	11.7	12.2	0.56	10.4	1.6	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
IstB_IS21	PF01695.17	gi|336254823|ref|YP_004597930.1|	-	0.25	11.0	0.6	2.8	7.6	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Fer4_21	PF14697.6	gi|336254823|ref|YP_004597930.1|	-	0.63	10.2	8.6	1.1	9.4	8.6	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336254823|ref|YP_004597930.1|	-	1.2	9.3	11.1	2.6	8.3	11.1	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336254823|ref|YP_004597930.1|	-	1.4	9.1	11.0	0.13	12.4	1.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|336254823|ref|YP_004597930.1|	-	4.5	8.1	7.1	21	5.9	7.1	2.3	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF2070	PF09843.9	gi|336254824|ref|YP_004597931.1|	-	0.024	12.9	0.5	0.028	12.7	0.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
AMP-binding	PF00501.28	gi|336254825|ref|YP_004597932.1|	-	6.2e-99	331.5	0.2	7.2e-99	331.2	0.2	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336254825|ref|YP_004597932.1|	-	2e-19	70.3	0.1	4.6e-19	69.2	0.1	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
HTH_24	PF13412.6	gi|336254826|ref|YP_004597933.1|	-	2.9e-06	26.7	0.0	4.1e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336254826|ref|YP_004597933.1|	-	0.00074	19.4	0.0	0.00085	19.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|336254826|ref|YP_004597933.1|	-	0.00087	19.2	0.0	0.0013	18.7	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
GntR	PF00392.21	gi|336254826|ref|YP_004597933.1|	-	0.0011	18.6	0.1	0.0019	17.8	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|336254826|ref|YP_004597933.1|	-	0.0018	18.1	0.0	0.0024	17.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336254826|ref|YP_004597933.1|	-	0.0025	17.7	0.1	0.0033	17.3	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|336254826|ref|YP_004597933.1|	-	0.0032	17.9	0.0	0.0045	17.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|336254826|ref|YP_004597933.1|	-	0.016	15.0	0.1	0.02	14.8	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_28	PF13518.6	gi|336254826|ref|YP_004597933.1|	-	0.019	15.1	0.0	0.041	14.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|336254826|ref|YP_004597933.1|	-	0.024	14.6	0.0	0.63	10.0	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|336254826|ref|YP_004597933.1|	-	0.024	14.4	0.0	0.054	13.3	0.0	1.5	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254826|ref|YP_004597933.1|	-	0.026	14.6	0.0	0.04	14.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_12	PF08461.10	gi|336254826|ref|YP_004597933.1|	-	0.035	14.1	0.1	0.09	12.7	0.1	1.7	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
PaaX	PF07848.12	gi|336254826|ref|YP_004597933.1|	-	0.037	14.2	0.0	0.054	13.7	0.0	1.2	1	0	0	1	1	1	0	PaaX-like	protein
HTH_5	PF01022.20	gi|336254826|ref|YP_004597933.1|	-	0.047	13.6	0.0	0.065	13.1	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Replic_Relax	PF13814.6	gi|336254826|ref|YP_004597933.1|	-	0.18	11.8	0.0	0.21	11.6	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
Sulf_transp	PF04143.14	gi|336254827|ref|YP_004597934.1|	-	0.0027	17.3	3.3	0.0034	17.0	3.3	1.0	1	0	0	1	1	1	1	Sulphur	transport
Babuvirus_MP	PF07234.11	gi|336254827|ref|YP_004597934.1|	-	0.014	15.6	0.2	0.026	14.7	0.2	1.4	1	0	0	1	1	1	0	Movement	and	RNA	silencing	protein
DUF3093	PF11292.8	gi|336254827|ref|YP_004597934.1|	-	0.29	11.4	4.6	0.14	12.4	0.5	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3093)
DUF805	PF05656.14	gi|336254827|ref|YP_004597934.1|	-	6.4	7.2	8.0	30	5.1	5.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF805)
NAD_synthase	PF02540.17	gi|336254828|ref|YP_004597935.1|	-	3e-72	242.7	0.0	3.5e-72	242.4	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|336254828|ref|YP_004597935.1|	-	1.3e-06	27.5	0.0	0.001	18.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
QueC	PF06508.13	gi|336254828|ref|YP_004597935.1|	-	0.00024	20.6	0.0	0.00079	19.0	0.0	1.7	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|336254828|ref|YP_004597935.1|	-	0.042	13.5	0.0	0.065	12.9	0.0	1.2	1	0	0	1	1	1	0	Asparagine	synthase
PAPS_reduct	PF01507.19	gi|336254828|ref|YP_004597935.1|	-	0.15	12.1	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
T2SSE	PF00437.20	gi|336254829|ref|YP_004597936.1|	-	8.2e-12	44.7	0.0	1.4e-11	44.0	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|336254829|ref|YP_004597936.1|	-	0.00036	21.0	0.0	0.00094	19.6	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
KH_1	PF00013.29	gi|336254829|ref|YP_004597936.1|	-	0.00048	19.9	0.1	0.0016	18.2	0.1	1.9	1	0	0	1	1	1	1	KH	domain
Thymidylate_kin	PF02223.17	gi|336254829|ref|YP_004597936.1|	-	0.00082	19.1	0.0	0.0019	17.9	0.0	1.6	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_25	PF13481.6	gi|336254829|ref|YP_004597936.1|	-	0.0049	16.5	0.1	0.016	14.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|336254829|ref|YP_004597936.1|	-	0.0074	16.5	0.0	0.075	13.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
KH_2	PF07650.17	gi|336254829|ref|YP_004597936.1|	-	0.0085	15.9	1.3	0.027	14.3	1.3	1.8	1	0	0	1	1	1	1	KH	domain
NTPase_1	PF03266.15	gi|336254829|ref|YP_004597936.1|	-	0.012	15.5	0.0	0.033	14.1	0.0	1.7	1	0	0	1	1	1	0	NTPase
AAA_18	PF13238.6	gi|336254829|ref|YP_004597936.1|	-	0.013	16.1	0.7	0.026	15.1	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
AAA_29	PF13555.6	gi|336254829|ref|YP_004597936.1|	-	0.014	15.1	0.0	0.038	13.7	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
KH_5	PF13184.6	gi|336254829|ref|YP_004597936.1|	-	0.016	15.3	0.2	0.043	13.9	0.2	1.7	1	0	0	1	1	1	0	NusA-like	KH	domain
ATPase	PF06745.13	gi|336254829|ref|YP_004597936.1|	-	0.022	14.1	0.0	0.079	12.3	0.0	1.8	2	0	0	2	2	2	0	KaiC
AAA_7	PF12775.7	gi|336254829|ref|YP_004597936.1|	-	0.025	14.1	0.0	0.042	13.4	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|336254829|ref|YP_004597936.1|	-	0.026	14.2	0.0	0.06	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|336254829|ref|YP_004597936.1|	-	0.03	14.3	0.0	0.067	13.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|336254829|ref|YP_004597936.1|	-	0.03	13.6	0.0	0.065	12.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_28	PF13521.6	gi|336254829|ref|YP_004597936.1|	-	0.034	14.4	0.0	0.34	11.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|336254829|ref|YP_004597936.1|	-	0.037	13.7	0.0	0.066	12.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA	PF00004.29	gi|336254829|ref|YP_004597936.1|	-	0.055	13.9	0.0	0.12	12.7	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|336254829|ref|YP_004597936.1|	-	0.063	13.2	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
Viral_helicase1	PF01443.18	gi|336254829|ref|YP_004597936.1|	-	0.078	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
KTI12	PF08433.10	gi|336254829|ref|YP_004597936.1|	-	0.079	12.4	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Sigma54_activat	PF00158.26	gi|336254829|ref|YP_004597936.1|	-	0.083	12.6	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_17	PF13207.6	gi|336254829|ref|YP_004597936.1|	-	0.1	13.1	0.3	2.5	8.6	0.0	3.2	3	1	1	4	4	4	0	AAA	domain
TsaE	PF02367.17	gi|336254829|ref|YP_004597936.1|	-	0.11	12.6	0.0	0.22	11.5	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ZT_dimer	PF16916.5	gi|336254829|ref|YP_004597936.1|	-	0.11	12.6	0.0	0.47	10.6	0.0	2.1	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
ABC_tran	PF00005.27	gi|336254829|ref|YP_004597936.1|	-	0.14	12.7	0.0	0.31	11.6	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
ATP_bind_1	PF03029.17	gi|336254829|ref|YP_004597936.1|	-	0.16	11.7	0.0	0.27	11.0	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.22	gi|336254829|ref|YP_004597936.1|	-	0.22	11.9	0.0	0.44	11.0	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|336254829|ref|YP_004597936.1|	-	0.22	10.7	0.0	0.4	9.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
HTH_20	PF12840.7	gi|336254830|ref|YP_004597937.1|	-	0.00048	20.1	1.3	0.0055	16.7	0.5	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336254830|ref|YP_004597937.1|	-	0.0015	18.4	0.0	0.0033	17.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|336254830|ref|YP_004597937.1|	-	0.0029	17.4	0.1	0.0047	16.8	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|336254830|ref|YP_004597937.1|	-	0.037	13.6	0.0	0.072	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|336254830|ref|YP_004597937.1|	-	0.06	13.3	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_DeoR	PF08220.12	gi|336254830|ref|YP_004597937.1|	-	0.066	13.0	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF1724	PF08350.10	gi|336254830|ref|YP_004597937.1|	-	0.12	12.5	0.1	2.1	8.6	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1724)
RP-C	PF03428.13	gi|336254830|ref|YP_004597937.1|	-	0.15	11.7	0.0	0.29	10.8	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Dimerisation2	PF16864.5	gi|336254830|ref|YP_004597937.1|	-	0.18	11.8	0.0	0.29	11.2	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
TrmB	PF01978.19	gi|336254830|ref|YP_004597937.1|	-	0.2	11.6	0.0	0.46	10.4	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Peptidase_M20	PF01546.28	gi|336254831|ref|YP_004597938.1|	-	1.6e-27	96.5	4.9	2.1e-27	96.2	4.9	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336254831|ref|YP_004597938.1|	-	1.4e-14	53.9	0.5	1.2e-13	50.9	0.1	2.2	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
TFIIS_C	PF01096.18	gi|336254832|ref|YP_004597939.1|	-	8.2e-05	22.4	3.3	0.019	14.8	0.5	2.3	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
HypA	PF01155.19	gi|336254832|ref|YP_004597939.1|	-	0.00022	21.2	0.7	0.00027	21.0	0.7	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF35_N	PF12172.8	gi|336254832|ref|YP_004597939.1|	-	0.00062	19.6	1.8	0.00098	19.0	1.8	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TackOD1	PF18551.1	gi|336254832|ref|YP_004597939.1|	-	0.001	18.8	0.2	0.0012	18.5	0.2	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
Zn-ribbon_8	PF09723.10	gi|336254832|ref|YP_004597939.1|	-	0.0011	19.0	4.6	0.0028	17.7	4.6	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
YhfH	PF14149.6	gi|336254832|ref|YP_004597939.1|	-	0.0019	18.1	3.2	1.4	9.0	0.1	3.1	2	1	1	3	3	3	1	YhfH-like	protein
Nop10p	PF04135.12	gi|336254832|ref|YP_004597939.1|	-	0.0022	18.0	0.4	0.0036	17.3	0.4	1.3	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
DZR	PF12773.7	gi|336254832|ref|YP_004597939.1|	-	0.0051	16.8	1.7	0.0072	16.3	1.7	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|336254832|ref|YP_004597939.1|	-	0.013	15.9	2.5	0.54	10.7	0.1	2.3	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DNA_ligase_ZBD	PF03119.16	gi|336254832|ref|YP_004597939.1|	-	0.014	15.4	3.8	0.018	15.1	0.2	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C3HC4_3	PF13920.6	gi|336254832|ref|YP_004597939.1|	-	0.017	15.0	0.6	0.024	14.5	0.6	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
TF_Zn_Ribbon	PF08271.12	gi|336254832|ref|YP_004597939.1|	-	0.027	14.0	1.6	5.7	6.5	0.2	2.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
zinc-ribbons_6	PF07191.12	gi|336254832|ref|YP_004597939.1|	-	0.028	14.4	1.5	0.036	14.0	1.5	1.2	1	0	0	1	1	1	0	zinc-ribbons
zf-ribbon_3	PF13248.6	gi|336254832|ref|YP_004597939.1|	-	0.028	13.8	1.3	1.3	8.5	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|336254832|ref|YP_004597939.1|	-	0.028	14.7	0.6	9.6	6.6	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon
Rubredoxin_2	PF18073.1	gi|336254832|ref|YP_004597939.1|	-	0.041	13.6	2.9	0.064	13.0	2.9	1.3	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
Nudix_N_2	PF14803.6	gi|336254832|ref|YP_004597939.1|	-	0.059	13.3	1.4	5	7.1	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
GFA	PF04828.14	gi|336254832|ref|YP_004597939.1|	-	0.069	13.5	1.6	0.74	10.2	1.6	2.0	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-C3HC4_2	PF13923.6	gi|336254832|ref|YP_004597939.1|	-	0.071	13.0	1.4	0.1	12.5	1.4	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
RE_MamI	PF09567.10	gi|336254832|ref|YP_004597939.1|	-	0.094	12.3	0.2	0.1	12.2	0.2	1.2	1	0	0	1	1	1	0	MamI	restriction	endonuclease
Ogr_Delta	PF04606.12	gi|336254832|ref|YP_004597939.1|	-	0.099	12.6	1.9	2.4	8.2	0.2	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf_UBZ	PF18439.1	gi|336254832|ref|YP_004597939.1|	-	0.24	11.0	2.7	0.61	9.7	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-Mss51	PF13824.6	gi|336254832|ref|YP_004597939.1|	-	0.34	11.0	3.4	2.4	8.3	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
OrfB_Zn_ribbon	PF07282.11	gi|336254832|ref|YP_004597939.1|	-	0.45	10.5	3.4	9.9	6.2	0.5	2.2	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn_ribbon_SprT	PF17283.2	gi|336254832|ref|YP_004597939.1|	-	0.72	9.8	3.7	1.9	8.5	0.8	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-C2H2	PF00096.26	gi|336254832|ref|YP_004597939.1|	-	4.8	7.8	4.5	1.1	9.9	0.5	1.9	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
Yip1	PF04893.17	gi|336254833|ref|YP_004597940.1|	-	1.9	8.2	28.3	2.2	8.0	28.3	1.1	1	0	0	1	1	1	0	Yip1	domain
Peptidase_M32	PF02074.15	gi|336254834|ref|YP_004597941.1|	-	1.6e-180	601.1	0.0	1.8e-180	600.9	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
DsrC	PF04358.13	gi|336254834|ref|YP_004597941.1|	-	0.19	12.2	0.2	0.75	10.3	0.1	2.0	2	0	0	2	2	2	0	DsrC	like	protein
adh_short	PF00106.25	gi|336254836|ref|YP_004597943.1|	-	4.6e-52	176.3	0.1	6.1e-52	175.9	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336254836|ref|YP_004597943.1|	-	1.7e-41	142.4	0.4	2.2e-41	142.0	0.4	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|336254836|ref|YP_004597943.1|	-	1.3e-12	48.0	0.0	2e-12	47.4	0.0	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336254836|ref|YP_004597943.1|	-	0.0006	19.4	0.1	0.0014	18.1	0.1	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ADH_zinc_N	PF00107.26	gi|336254836|ref|YP_004597943.1|	-	0.00072	19.5	0.3	0.0029	17.6	0.2	2.1	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
Polysacc_synt_2	PF02719.15	gi|336254836|ref|YP_004597943.1|	-	0.0069	15.6	0.0	0.012	14.8	0.0	1.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
FeS	PF04060.13	gi|336254836|ref|YP_004597943.1|	-	0.44	10.2	1.2	0.95	9.2	1.2	1.5	1	0	0	1	1	1	0	Putative	Fe-S	cluster
CSD	PF00313.22	gi|336254838|ref|YP_004597945.1|	-	2.7e-19	68.8	0.4	2.9e-19	68.7	0.4	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|336254838|ref|YP_004597945.1|	-	0.0052	16.5	1.7	0.007	16.0	1.7	1.3	1	0	0	1	1	1	1	Ribonuclease	B	OB	domain
S1-like	PF14444.6	gi|336254838|ref|YP_004597945.1|	-	0.066	13.2	0.2	0.096	12.6	0.2	1.3	1	1	0	1	1	1	0	S1-like
Peptidase_M10_C	PF08548.11	gi|336254838|ref|YP_004597945.1|	-	0.067	13.1	0.3	0.074	12.9	0.3	1.1	1	0	0	1	1	1	0	Peptidase	M10	serralysin	C	terminal
Rho_RNA_bind	PF07497.12	gi|336254838|ref|YP_004597945.1|	-	0.081	12.8	0.0	0.092	12.6	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
Peripla_BP_2	PF01497.18	gi|336254839|ref|YP_004597946.1|	-	1.2e-22	80.7	0.6	1.6e-22	80.3	0.6	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
DUF883	PF05957.13	gi|336254839|ref|YP_004597946.1|	-	0.059	14.0	0.5	0.12	13.0	0.5	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF2070	PF09843.9	gi|336254839|ref|YP_004597946.1|	-	0.34	9.2	0.3	0.46	8.7	0.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Prok-JAB	PF14464.6	gi|336254840|ref|YP_004597947.1|	-	3.2e-20	72.0	0.1	5.1e-20	71.4	0.1	1.3	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.21	gi|336254840|ref|YP_004597947.1|	-	2e-06	27.8	0.0	2.9e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
ZapB	PF06005.12	gi|336254842|ref|YP_004597949.1|	-	0.048	14.1	1.7	8.3	6.9	0.0	2.1	2	0	0	2	2	2	0	Cell	division	protein	ZapB
Sulfatase	PF00884.23	gi|336254843|ref|YP_004597950.1|	-	2.1e-47	162.0	0.1	2.9e-47	161.5	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
DUF4976	PF16347.5	gi|336254843|ref|YP_004597950.1|	-	3.4e-12	46.5	0.0	6e-12	45.7	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
Phosphodiest	PF01663.22	gi|336254843|ref|YP_004597950.1|	-	4.1e-10	39.8	0.3	0.00011	21.9	0.0	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|336254843|ref|YP_004597950.1|	-	0.01	14.5	0.1	0.015	14.0	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|336254843|ref|YP_004597950.1|	-	0.16	11.0	1.2	0.63	9.0	0.4	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1501)
DoxX	PF07681.12	gi|336254845|ref|YP_004597952.1|	-	2e-07	31.5	10.6	2e-07	31.5	10.6	1.6	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.13	gi|336254845|ref|YP_004597952.1|	-	8.4e-06	25.8	7.9	4.8e-05	23.3	7.9	1.9	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
tRNA-synt_His	PF13393.6	gi|336254846|ref|YP_004597953.1|	-	3.2e-53	181.0	0.1	3.9e-53	180.7	0.1	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|336254846|ref|YP_004597953.1|	-	1.1e-13	51.2	1.1	2e-13	50.3	0.2	1.8	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|336254846|ref|YP_004597953.1|	-	1e-08	35.4	0.0	1.3e-08	35.1	0.0	1.3	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
tRNA-synt_2d	PF01409.20	gi|336254846|ref|YP_004597953.1|	-	0.0031	17.0	0.0	0.006	16.1	0.0	1.4	1	1	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
Asn_synthase	PF00733.21	gi|336254847|ref|YP_004597954.1|	-	0.0014	18.3	0.1	0.0018	18.0	0.1	1.2	1	0	0	1	1	1	1	Asparagine	synthase
dsDNA_bind	PF01984.20	gi|336254848|ref|YP_004597955.1|	-	2.1e-26	92.4	14.2	2.4e-26	92.2	14.2	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
PCI	PF01399.27	gi|336254848|ref|YP_004597955.1|	-	0.011	16.2	0.1	0.02	15.4	0.1	1.8	1	1	0	1	1	1	0	PCI	domain
T3SSipB	PF16535.5	gi|336254848|ref|YP_004597955.1|	-	0.12	12.8	10.3	0.057	13.9	7.6	1.6	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
VAPB_antitox	PF02697.14	gi|336254848|ref|YP_004597955.1|	-	2.3	9.1	6.5	71	4.3	0.4	3.0	3	0	0	3	3	3	0	Putative	antitoxin
Ribosomal_S19e	PF01090.19	gi|336254849|ref|YP_004597956.1|	-	3.1e-46	156.5	0.0	3.6e-46	156.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.21	gi|336254849|ref|YP_004597956.1|	-	0.016	14.8	0.2	0.094	12.4	0.1	2.3	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|336254849|ref|YP_004597956.1|	-	0.036	14.4	0.0	0.33	11.3	0.0	2.1	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_12	PF08461.10	gi|336254849|ref|YP_004597956.1|	-	0.13	12.2	1.0	0.67	9.9	0.1	2.4	3	0	0	3	3	3	0	Ribonuclease	R	winged-helix	domain
AIRS	PF00586.24	gi|336254850|ref|YP_004597957.1|	-	4.4e-19	68.9	1.9	1e-18	67.7	1.9	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|336254850|ref|YP_004597957.1|	-	3.8e-16	59.6	0.7	9.9e-16	58.3	0.1	1.8	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
Peptidase_M50	PF02163.22	gi|336254851|ref|YP_004597958.1|	-	2.1e-13	50.1	10.1	6.4e-07	28.9	0.3	2.3	1	1	1	2	2	2	2	Peptidase	family	M50
MoaE	PF02391.17	gi|336254854|ref|YP_004597961.1|	-	1.9e-24	86.1	0.4	3.7e-24	85.2	0.4	1.5	1	0	0	1	1	1	1	MoaE	protein
DUF3906	PF13046.6	gi|336254854|ref|YP_004597961.1|	-	0.035	14.2	0.1	0.072	13.2	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3906)
PGA_cap	PF09587.10	gi|336254855|ref|YP_004597962.1|	-	2.8e-65	220.3	0.0	3.3e-65	220.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
Glyco_transf_4	PF13439.6	gi|336254855|ref|YP_004597962.1|	-	0.013	15.5	0.0	0.032	14.2	0.0	1.7	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
AA_kinase	PF00696.28	gi|336254856|ref|YP_004597963.1|	-	1.4e-26	93.5	5.2	3.2e-26	92.4	5.2	1.5	1	1	0	1	1	1	1	Amino	acid	kinase	family
DUF2844	PF11005.8	gi|336254856|ref|YP_004597963.1|	-	0.015	15.4	0.0	0.083	12.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2844)
tRNA-synt_1f	PF01921.18	gi|336254857|ref|YP_004597964.1|	-	1.1e-99	333.8	0.0	1.5e-99	333.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|336254857|ref|YP_004597964.1|	-	9.4e-09	34.5	0.0	6.4e-07	28.4	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|336254857|ref|YP_004597964.1|	-	0.0011	18.3	0.0	0.013	14.8	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1b	PF00579.25	gi|336254857|ref|YP_004597964.1|	-	0.04	13.2	0.0	4.8	6.4	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(W	and	Y)
Peptidase_M50	PF02163.22	gi|336254858|ref|YP_004597965.1|	-	1.7e-22	79.9	0.0	5.3e-22	78.3	0.0	1.8	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|336254858|ref|YP_004597965.1|	-	4.8e-22	78.1	2.9	2.3e-07	31.0	0.1	3.3	1	1	2	3	3	3	3	PDZ	domain
PDZ_6	PF17820.1	gi|336254858|ref|YP_004597965.1|	-	5.6e-13	48.5	10.3	2.3e-08	33.8	0.6	3.1	4	0	0	4	4	4	2	PDZ	domain
PDZ	PF00595.24	gi|336254858|ref|YP_004597965.1|	-	5e-10	39.6	1.6	3.9e-06	27.1	0.2	2.5	1	1	0	2	2	2	2	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|336254858|ref|YP_004597965.1|	-	2.1e-08	34.0	3.8	0.0024	17.8	0.2	3.4	2	1	1	3	3	3	3	Tricorn	protease	PDZ	domain
GRASP55_65	PF04495.14	gi|336254858|ref|YP_004597965.1|	-	0.0048	17.2	0.0	0.44	10.9	0.0	2.5	1	1	0	2	2	2	1	GRASP55/65	PDZ-like	domain
Arteri_nsp7a	PF16749.5	gi|336254858|ref|YP_004597965.1|	-	0.036	14.3	0.3	0.12	12.6	0.1	1.9	2	0	0	2	2	2	0	Arterivirus	nonstructural	protein	7	alpha
PadR	PF03551.14	gi|336254859|ref|YP_004597966.1|	-	1.5e-24	85.7	0.3	2.4e-24	85.1	0.3	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|336254859|ref|YP_004597966.1|	-	0.0086	16.7	0.1	0.013	16.1	0.1	1.3	1	0	0	1	1	1	1	Replication	terminator	protein
CDT1	PF08839.11	gi|336254859|ref|YP_004597966.1|	-	0.054	13.8	0.0	0.095	13.0	0.0	1.3	1	1	0	1	1	1	0	DNA	replication	factor	CDT1	like
TrmB	PF01978.19	gi|336254859|ref|YP_004597966.1|	-	0.062	13.2	0.0	0.22	11.5	0.0	2.0	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF505	PF04458.12	gi|336254859|ref|YP_004597966.1|	-	0.15	10.4	0.3	0.19	10.0	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
Chlor_dismutase	PF06778.12	gi|336254860|ref|YP_004597967.1|	-	4.1e-64	215.8	0.0	7.1e-64	215.0	0.0	1.4	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.16	gi|336254860|ref|YP_004597967.1|	-	2.8e-07	30.6	0.2	2.8e-07	30.6	0.2	4.0	4	0	0	4	4	4	1	Antibiotic	biosynthesis	monooxygenase
DUF5493	PF17597.2	gi|336254861|ref|YP_004597968.1|	-	0.088	13.1	1.1	0.1	12.9	1.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5493)
DUF2933	PF11666.8	gi|336254861|ref|YP_004597968.1|	-	0.35	10.9	3.8	0.65	10.1	0.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2933)
DUF5611	PF18446.1	gi|336254862|ref|YP_004597969.1|	-	1.2e-30	106.4	0.1	1.4e-30	106.2	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5611)
zinc_ribbon_9	PF14369.6	gi|336254863|ref|YP_004597970.1|	-	3.1	8.2	6.3	2.4	8.5	2.7	2.7	2	1	1	3	3	3	0	zinc-ribbon
GntR	PF00392.21	gi|336254864|ref|YP_004597971.1|	-	0.019	14.6	0.0	0.033	13.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
FANCI_S1-cap	PF14674.6	gi|336254864|ref|YP_004597971.1|	-	0.15	12.2	0.1	0.24	11.5	0.1	1.3	1	0	0	1	1	1	0	FANCI	solenoid	1	cap
DUF2122	PF09895.9	gi|336254864|ref|YP_004597971.1|	-	0.22	11.9	1.2	0.62	10.5	0.2	1.9	1	1	0	2	2	2	0	RecB-family	nuclease	(DUF2122)
GCV_T	PF01571.21	gi|336254865|ref|YP_004597972.1|	-	6.9e-40	137.0	0.0	9.3e-40	136.6	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|336254865|ref|YP_004597972.1|	-	4.3e-14	52.2	0.0	9.1e-14	51.1	0.0	1.6	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
DUF389	PF04087.14	gi|336254867|ref|YP_004597974.1|	-	1.5e-31	109.4	17.6	1.5e-31	109.4	17.6	1.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
Bacteriocin_IIc	PF10439.9	gi|336254868|ref|YP_004597975.1|	-	0.0019	18.3	6.7	0.0026	17.9	6.7	1.2	1	0	0	1	1	1	1	Bacteriocin	class	II	with	double-glycine	leader	peptide
DUF3482	PF11981.8	gi|336254868|ref|YP_004597975.1|	-	0.091	12.1	4.0	0.097	12.0	4.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Romo1	PF10247.9	gi|336254868|ref|YP_004597975.1|	-	2.1	8.8	6.4	3.9	7.9	2.1	2.1	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
FAD_binding_4	PF01565.23	gi|336254869|ref|YP_004597976.1|	-	1.5e-34	118.7	4.0	2.1e-34	118.2	4.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
BBE	PF08031.12	gi|336254869|ref|YP_004597976.1|	-	5.1e-10	39.3	0.0	9.9e-10	38.4	0.0	1.5	1	0	0	1	1	1	1	Berberine	and	berberine	like
FAD_binding_3	PF01494.19	gi|336254870|ref|YP_004597977.1|	-	1.4e-10	41.0	5.3	2.2e-08	33.8	1.9	2.8	2	1	0	2	2	2	2	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|336254870|ref|YP_004597977.1|	-	1.2e-07	31.2	0.2	0.0018	17.4	0.0	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|336254870|ref|YP_004597977.1|	-	1.5e-05	24.4	0.7	0.00031	20.1	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336254870|ref|YP_004597977.1|	-	0.00046	19.9	7.3	0.0012	18.5	0.5	2.8	1	1	1	3	3	3	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|336254870|ref|YP_004597977.1|	-	0.0024	17.3	0.5	0.0033	16.9	0.5	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336254870|ref|YP_004597977.1|	-	0.0097	15.0	1.1	0.031	13.4	0.2	2.0	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|336254870|ref|YP_004597977.1|	-	0.026	13.2	0.1	0.12	11.1	0.0	1.8	2	0	0	2	2	2	0	HI0933-like	protein
Trp_halogenase	PF04820.14	gi|336254870|ref|YP_004597977.1|	-	0.043	12.6	0.5	0.26	10.1	0.1	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|336254870|ref|YP_004597977.1|	-	0.049	12.9	0.3	0.68	9.1	0.1	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336254870|ref|YP_004597977.1|	-	0.075	13.3	1.1	1.2	9.4	0.3	3.0	3	1	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
DUF359	PF04019.12	gi|336254872|ref|YP_004597979.1|	-	2.3e-41	140.4	0.2	3.1e-41	139.9	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
DUF2939	PF11159.8	gi|336254872|ref|YP_004597979.1|	-	0.011	16.2	0.1	0.024	15.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2939)
Spt4	PF06093.13	gi|336254873|ref|YP_004597980.1|	-	1e-13	51.1	0.1	1.3e-13	50.9	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.7	gi|336254873|ref|YP_004597980.1|	-	0.0019	18.2	0.7	0.0024	17.9	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RRN7	PF11781.8	gi|336254873|ref|YP_004597980.1|	-	0.061	13.0	3.9	2.2	8.0	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
SHS2_Rpb7-N	PF03876.17	gi|336254874|ref|YP_004597981.1|	-	2.5e-15	56.6	0.0	4e-15	55.9	0.0	1.3	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.23	gi|336254874|ref|YP_004597981.1|	-	6.4e-12	45.7	0.2	1.3e-11	44.6	0.2	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
RNA_pol_Rbc25	PF08292.12	gi|336254874|ref|YP_004597981.1|	-	0.068	13.4	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	Rpc25
PIN_9	PF18477.1	gi|336254875|ref|YP_004597982.1|	-	1.2e-38	131.9	0.5	1.4e-38	131.7	0.5	1.0	1	0	0	1	1	1	1	PIN	like	domain
DUF188	PF02639.14	gi|336254875|ref|YP_004597982.1|	-	2.3e-07	30.5	0.1	3.2e-07	30.1	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
PIN_3	PF13470.6	gi|336254875|ref|YP_004597982.1|	-	0.019	15.7	0.9	0.042	14.6	0.9	1.6	1	1	0	1	1	1	0	PIN	domain
PIN	PF01850.21	gi|336254875|ref|YP_004597982.1|	-	0.082	13.4	0.1	0.28	11.7	0.1	1.7	1	1	1	2	2	2	0	PIN	domain
GTP_EFTU	PF00009.27	gi|336254876|ref|YP_004597983.1|	-	5.5e-30	104.3	0.9	3.7e-29	101.7	0.9	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|336254876|ref|YP_004597983.1|	-	1.8e-29	101.8	0.0	3.7e-29	100.8	0.0	1.5	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|336254876|ref|YP_004597983.1|	-	3e-08	34.0	1.2	3e-08	34.0	1.2	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
RsgA_GTPase	PF03193.16	gi|336254876|ref|YP_004597983.1|	-	7.3e-05	22.7	0.2	0.0067	16.3	0.0	2.2	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|336254876|ref|YP_004597983.1|	-	0.00012	22.1	0.0	0.00023	21.2	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.9	gi|336254876|ref|YP_004597983.1|	-	0.043	13.5	0.1	0.25	11.1	0.0	2.1	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
FeoB_N	PF02421.18	gi|336254876|ref|YP_004597983.1|	-	0.071	12.6	0.5	4.2	6.9	0.0	2.5	1	1	1	2	2	2	0	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|336254876|ref|YP_004597983.1|	-	0.1	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
SRPRB	PF09439.10	gi|336254876|ref|YP_004597983.1|	-	0.12	11.7	0.0	7.5	5.9	0.0	2.2	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
DUF2171	PF09939.9	gi|336254878|ref|YP_004597985.1|	-	2.9e-05	24.3	1.2	0.00011	22.5	1.2	1.8	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
PRC	PF05239.16	gi|336254878|ref|YP_004597985.1|	-	0.045	13.8	0.8	0.077	13.1	0.8	1.6	1	1	0	1	1	1	0	PRC-barrel	domain
Lactamase_B_2	PF12706.7	gi|336254879|ref|YP_004597986.1|	-	5.9e-22	78.2	0.3	7.6e-22	77.8	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|336254879|ref|YP_004597986.1|	-	0.00023	21.2	4.0	0.00037	20.6	4.0	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Mur_ligase_M	PF08245.12	gi|336254879|ref|YP_004597986.1|	-	0.14	12.1	0.0	0.23	11.4	0.0	1.2	1	0	0	1	1	1	0	Mur	ligase	middle	domain
NTP_transf_2	PF01909.23	gi|336254880|ref|YP_004597987.1|	-	0.13	12.5	0.1	0.16	12.3	0.1	1.2	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
AAA	PF00004.29	gi|336254882|ref|YP_004597989.1|	-	1.7e-38	132.0	0.0	4e-38	130.8	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|336254882|ref|YP_004597989.1|	-	9.6e-10	38.1	0.1	2.8e-09	36.6	0.1	1.8	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_5	PF07728.14	gi|336254882|ref|YP_004597989.1|	-	3.8e-05	23.7	0.0	0.00015	21.8	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|336254882|ref|YP_004597989.1|	-	0.00016	22.2	0.3	0.0055	17.2	0.0	2.8	3	0	0	3	3	2	1	AAA	domain
AAA_22	PF13401.6	gi|336254882|ref|YP_004597989.1|	-	0.00026	21.3	1.4	0.13	12.5	0.4	3.2	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336254882|ref|YP_004597989.1|	-	0.00039	20.9	1.1	0.012	15.9	0.7	3.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_7	PF12775.7	gi|336254882|ref|YP_004597989.1|	-	0.00042	19.9	0.0	0.0011	18.5	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_2	PF07724.14	gi|336254882|ref|YP_004597989.1|	-	0.00049	20.2	0.6	0.0015	18.7	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|336254882|ref|YP_004597989.1|	-	0.00098	18.9	0.0	0.0019	17.9	0.0	1.6	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_28	PF13521.6	gi|336254882|ref|YP_004597989.1|	-	0.0016	18.7	0.0	0.0061	16.8	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|336254882|ref|YP_004597989.1|	-	0.003	17.2	0.0	0.026	14.1	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|336254882|ref|YP_004597989.1|	-	0.0041	17.3	0.4	0.023	14.8	0.0	2.5	2	2	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|336254882|ref|YP_004597989.1|	-	0.012	14.8	0.0	0.025	13.8	0.0	1.5	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_17	PF13207.6	gi|336254882|ref|YP_004597989.1|	-	0.013	15.9	0.2	0.055	13.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|336254882|ref|YP_004597989.1|	-	0.014	15.1	0.1	0.073	12.8	0.0	2.3	1	1	2	3	3	3	0	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|336254882|ref|YP_004597989.1|	-	0.022	14.0	0.1	0.041	13.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_11	PF13086.6	gi|336254882|ref|YP_004597989.1|	-	0.025	14.3	0.0	0.047	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|336254882|ref|YP_004597989.1|	-	0.051	14.0	0.0	0.097	13.1	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Mg_chelatase	PF01078.21	gi|336254882|ref|YP_004597989.1|	-	0.052	12.9	0.0	0.095	12.1	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
T2SSE	PF00437.20	gi|336254882|ref|YP_004597989.1|	-	0.055	12.5	0.0	0.14	11.2	0.0	1.6	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TniB	PF05621.11	gi|336254882|ref|YP_004597989.1|	-	0.06	12.8	0.0	6.4	6.1	0.0	2.4	1	1	0	2	2	2	0	Bacterial	TniB	protein
AAA_3	PF07726.11	gi|336254882|ref|YP_004597989.1|	-	0.061	13.2	0.3	0.14	12.0	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|336254882|ref|YP_004597989.1|	-	0.066	13.7	0.0	0.31	11.6	0.0	2.2	2	1	0	2	2	2	0	ABC	transporter
MMR_HSR1	PF01926.23	gi|336254882|ref|YP_004597989.1|	-	0.1	12.7	0.0	0.24	11.5	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ResIII	PF04851.15	gi|336254882|ref|YP_004597989.1|	-	0.12	12.4	0.0	0.22	11.5	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Usp	PF00582.26	gi|336254883|ref|YP_004597990.1|	-	9.7e-14	52.1	0.0	2.6e-12	47.4	0.0	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
DAGK_cat	PF00781.24	gi|336254883|ref|YP_004597990.1|	-	0.041	13.5	0.1	0.11	12.2	0.0	1.6	1	1	1	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
SBP_bac_5	PF00496.22	gi|336254883|ref|YP_004597990.1|	-	0.049	12.6	0.0	0.055	12.4	0.0	1.0	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
FMN_red	PF03358.15	gi|336254883|ref|YP_004597990.1|	-	0.051	13.3	0.0	0.074	12.8	0.0	1.3	1	0	0	1	1	1	0	NADPH-dependent	FMN	reductase
Z1	PF10593.9	gi|336254883|ref|YP_004597990.1|	-	0.074	12.5	0.0	0.092	12.2	0.0	1.1	1	0	0	1	1	1	0	Z1	domain
Acetyltransf_1	PF00583.25	gi|336254884|ref|YP_004597991.1|	-	1.9e-19	70.0	0.0	2.5e-19	69.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336254884|ref|YP_004597991.1|	-	1.2e-12	47.9	0.0	2e-12	47.2	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336254884|ref|YP_004597991.1|	-	6.2e-12	45.8	0.0	9.1e-12	45.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336254884|ref|YP_004597991.1|	-	4.2e-08	34.0	0.0	5e-08	33.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336254884|ref|YP_004597991.1|	-	5.5e-06	26.3	0.0	8.3e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|336254884|ref|YP_004597991.1|	-	0.00017	21.7	0.0	0.00042	20.4	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336254884|ref|YP_004597991.1|	-	0.00031	20.9	0.0	0.00042	20.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|336254884|ref|YP_004597991.1|	-	0.1	12.6	0.0	0.43	10.6	0.0	1.9	1	1	1	2	2	2	0	ESCO1/2	acetyl-transferase
Usp	PF00582.26	gi|336254885|ref|YP_004597992.1|	-	1.5e-11	45.0	2.9	4e-11	43.6	2.9	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.26	gi|336254886|ref|YP_004597993.1|	-	3.7e-35	121.5	6.6	4.6e-35	121.2	6.6	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DrsE	PF02635.15	gi|336254887|ref|YP_004597994.1|	-	0.0075	16.6	0.0	0.017	15.5	0.0	1.6	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DHH	PF01368.20	gi|336254887|ref|YP_004597994.1|	-	0.0096	16.1	0.9	0.019	15.2	0.9	1.5	1	0	0	1	1	1	1	DHH	family
Glyco_hydro_57	PF03065.15	gi|336254887|ref|YP_004597994.1|	-	0.014	14.6	0.0	0.02	14.1	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
PGM_PMM_II	PF02879.16	gi|336254887|ref|YP_004597994.1|	-	0.015	15.9	0.6	0.083	13.5	0.1	2.5	3	0	0	3	3	3	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
DHHA1	PF02272.19	gi|336254887|ref|YP_004597994.1|	-	0.021	15.2	0.3	0.077	13.4	0.1	2.2	2	1	0	2	2	2	0	DHHA1	domain
PrpR_N	PF06506.11	gi|336254887|ref|YP_004597994.1|	-	0.058	13.0	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	Propionate	catabolism	activator
CoA_binding_2	PF13380.6	gi|336254887|ref|YP_004597994.1|	-	0.42	11.1	2.1	0.93	10.0	0.5	2.6	2	1	0	2	2	2	0	CoA	binding	domain
TFIIB	PF00382.19	gi|336254888|ref|YP_004597995.1|	-	4.6e-43	145.1	2.2	8.6e-23	80.2	0.3	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336254888|ref|YP_004597995.1|	-	4e-16	58.2	2.7	7.1e-16	57.4	2.7	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|336254888|ref|YP_004597995.1|	-	0.003	17.2	0.7	0.0083	15.8	0.7	1.8	1	1	0	1	1	1	1	A2L	zinc	ribbon	domain
Cyclin_N	PF00134.23	gi|336254888|ref|YP_004597995.1|	-	0.0064	16.2	0.0	0.016	14.9	0.0	1.7	1	0	0	1	1	1	1	Cyclin,	N-terminal	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336254888|ref|YP_004597995.1|	-	0.02	14.8	2.9	0.041	13.9	2.9	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
Zn_Tnp_IS1595	PF12760.7	gi|336254888|ref|YP_004597995.1|	-	0.027	14.4	0.1	0.064	13.2	0.1	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Sigma70_r4	PF04545.16	gi|336254888|ref|YP_004597995.1|	-	0.036	13.6	2.2	0.22	11.1	0.1	3.1	3	1	0	3	3	3	0	Sigma-70,	region	4
Ribosomal_S27e	PF01667.17	gi|336254888|ref|YP_004597995.1|	-	0.059	13.1	0.4	0.12	12.1	0.4	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
DUF2318	PF10080.9	gi|336254888|ref|YP_004597995.1|	-	0.1	12.7	0.3	0.23	11.6	0.3	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Zn-ribbon_8	PF09723.10	gi|336254888|ref|YP_004597995.1|	-	0.15	12.2	3.0	1.9	8.7	0.6	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
eIF-6	PF01912.18	gi|336254888|ref|YP_004597995.1|	-	0.15	11.4	0.1	0.27	10.6	0.1	1.3	1	0	0	1	1	1	0	eIF-6	family
zf-ribbon_3	PF13248.6	gi|336254888|ref|YP_004597995.1|	-	0.31	10.5	1.5	1	8.8	1.5	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|336254888|ref|YP_004597995.1|	-	4.9	6.9	9.5	1.8	8.3	0.0	3.1	2	1	1	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF202	PF02656.15	gi|336254889|ref|YP_004597996.1|	-	0.0027	18.1	5.0	0.0027	18.1	5.0	4.2	2	2	1	3	3	3	1	Domain	of	unknown	function	(DUF202)
Herpes_LMP1	PF05297.11	gi|336254889|ref|YP_004597996.1|	-	1.4	8.1	5.6	0.45	9.7	2.5	1.8	2	0	0	2	2	2	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DPM3	PF08285.11	gi|336254889|ref|YP_004597996.1|	-	2.4	8.4	4.9	91	3.4	2.2	3.3	2	1	0	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
MCPsignal	PF00015.21	gi|336254891|ref|YP_004597998.1|	-	9.9e-47	158.9	49.7	4.1e-44	150.4	25.2	4.0	1	1	3	4	4	4	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|336254891|ref|YP_004597998.1|	-	1.5e-05	25.1	33.1	0.045	14.0	3.5	4.8	2	2	2	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|336254891|ref|YP_004597998.1|	-	0.00015	21.8	36.6	0.0055	16.7	6.6	5.1	2	2	3	5	5	5	3	Laminin	Domain	II
DUF812	PF05667.11	gi|336254891|ref|YP_004597998.1|	-	0.0013	17.7	35.1	0.0069	15.3	7.4	3.4	3	1	1	4	4	4	3	Protein	of	unknown	function	(DUF812)
DUF1664	PF07889.12	gi|336254891|ref|YP_004597998.1|	-	0.0031	17.5	31.8	0.017	15.1	1.6	5.1	3	2	3	6	6	5	2	Protein	of	unknown	function	(DUF1664)
CorA	PF01544.18	gi|336254891|ref|YP_004597998.1|	-	0.0081	15.5	25.2	0.052	12.9	4.3	3.4	2	1	1	3	3	3	3	CorA-like	Mg2+	transporter	protein
Mod_r	PF07200.13	gi|336254891|ref|YP_004597998.1|	-	0.024	14.7	0.8	0.024	14.7	0.8	3.6	2	2	1	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
Fib_alpha	PF08702.10	gi|336254891|ref|YP_004597998.1|	-	0.03	14.5	19.7	0.24	11.6	0.5	4.3	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
DASH_Dad2	PF08654.10	gi|336254891|ref|YP_004597998.1|	-	0.046	14.1	21.5	0.11	13.0	3.5	4.4	1	1	2	3	3	3	0	DASH	complex	subunit	Dad2
ING	PF12998.7	gi|336254891|ref|YP_004597998.1|	-	0.22	12.1	9.1	0.73	10.5	0.5	3.6	1	1	3	4	4	4	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
DUF3450	PF11932.8	gi|336254891|ref|YP_004597998.1|	-	0.3	10.3	39.3	0.37	10.0	10.1	3.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
BLOC1_2	PF10046.9	gi|336254891|ref|YP_004597998.1|	-	0.5	10.7	33.5	0.4	11.0	0.7	5.1	2	2	2	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Sec34	PF04136.15	gi|336254891|ref|YP_004597998.1|	-	0.6	10.0	16.7	8.1	6.3	3.2	4.7	2	2	3	5	5	5	0	Sec34-like	family
Syntaxin-6_N	PF09177.11	gi|336254891|ref|YP_004597998.1|	-	0.71	10.5	31.8	3.3	8.3	2.8	5.1	2	2	2	5	5	5	0	Syntaxin	6,	N-terminal
DASH_Duo1	PF08651.10	gi|336254891|ref|YP_004597998.1|	-	0.79	9.5	10.2	8.5	6.2	0.1	4.4	5	0	0	5	5	3	0	DASH	complex	subunit	Duo1
ATG16	PF08614.11	gi|336254891|ref|YP_004597998.1|	-	0.95	9.6	41.6	0.31	11.2	11.3	4.1	2	1	2	4	4	4	0	Autophagy	protein	16	(ATG16)
Spc7	PF08317.11	gi|336254891|ref|YP_004597998.1|	-	0.95	8.3	39.9	2.2	7.1	15.9	3.5	2	1	1	4	4	4	0	Spc7	kinetochore	protein
Syntaxin_2	PF14523.6	gi|336254891|ref|YP_004597998.1|	-	0.99	9.8	8.4	21	5.6	0.3	4.3	1	1	2	3	3	3	0	Syntaxin-like	protein
MscS_porin	PF12795.7	gi|336254891|ref|YP_004597998.1|	-	1.4	8.4	36.1	0.033	13.7	18.2	3.5	1	1	2	3	3	3	0	Mechanosensitive	ion	channel	porin	domain
HOOK	PF05622.12	gi|336254891|ref|YP_004597998.1|	-	1.4	6.9	30.3	0.52	8.4	9.5	2.7	1	1	1	2	2	2	0	HOOK	protein
FlaC_arch	PF05377.11	gi|336254891|ref|YP_004597998.1|	-	1.5	9.3	29.7	0.66	10.4	1.5	6.3	3	2	1	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
GAS	PF13851.6	gi|336254891|ref|YP_004597998.1|	-	1.6	8.0	20.6	1	8.7	10.4	3.2	1	1	2	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
Dynactin_p22	PF07426.11	gi|336254891|ref|YP_004597998.1|	-	2.4	8.0	12.5	2.9	7.7	7.7	2.5	2	1	0	2	2	2	0	Dynactin	subunit	p22
Prominin	PF05478.11	gi|336254891|ref|YP_004597998.1|	-	2.4	6.0	13.3	0.79	7.6	9.0	2.0	1	1	1	2	2	2	0	Prominin
DUF745	PF05335.13	gi|336254891|ref|YP_004597998.1|	-	2.6	7.8	38.1	0.31	10.7	3.8	4.5	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF745)
DUF3037	PF11236.8	gi|336254891|ref|YP_004597998.1|	-	2.6	8.5	14.0	0.99	9.8	0.7	4.0	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3037)
TMPIT	PF07851.13	gi|336254891|ref|YP_004597998.1|	-	3.1	7.0	17.4	0.46	9.7	1.2	3.2	2	1	1	3	3	3	0	TMPIT-like	protein
RecG_N	PF17190.4	gi|336254891|ref|YP_004597998.1|	-	3.2	8.6	8.6	56	4.5	0.1	4.8	3	2	1	5	5	5	0	RecG	N-terminal	helical	domain
Goodbye	PF17109.5	gi|336254891|ref|YP_004597998.1|	-	3.6	8.1	14.0	17	5.9	0.5	4.2	2	2	3	5	5	5	0	fungal	STAND	N-terminal	Goodbye	domain
Lebercilin	PF15619.6	gi|336254891|ref|YP_004597998.1|	-	4.3	6.9	21.4	0.35	10.5	11.0	2.6	2	1	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
FH2	PF02181.23	gi|336254891|ref|YP_004597998.1|	-	5.5	6.0	19.2	0.38	9.8	3.5	3.6	1	1	3	4	4	4	0	Formin	Homology	2	Domain
Spectrin	PF00435.21	gi|336254891|ref|YP_004597998.1|	-	5.5	7.5	24.2	0.96	10.0	2.7	4.5	1	1	2	4	4	4	0	Spectrin	repeat
LXG	PF04740.12	gi|336254891|ref|YP_004597998.1|	-	6.1	6.5	29.9	4.5	6.9	5.1	4.3	2	2	1	3	3	3	0	LXG	domain	of	WXG	superfamily
AAA_13	PF13166.6	gi|336254891|ref|YP_004597998.1|	-	6.9	5.2	32.5	1.4	7.5	16.6	2.4	1	1	1	2	2	2	0	AAA	domain
IFT57	PF10498.9	gi|336254891|ref|YP_004597998.1|	-	7.8	5.3	26.4	2	7.3	4.8	2.6	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
TPR_MLP1_2	PF07926.12	gi|336254891|ref|YP_004597998.1|	-	9.1	6.4	42.1	2.3	8.3	9.5	3.8	2	1	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
DUF677	PF05055.12	gi|336254891|ref|YP_004597998.1|	-	9.2	5.0	26.1	0.034	13.0	6.5	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF677)
DUF4200	PF13863.6	gi|336254891|ref|YP_004597998.1|	-	9.5	6.6	25.1	0.19	12.2	7.2	4.1	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF4200)
CheW	PF01584.19	gi|336254892|ref|YP_004597999.1|	-	1.8e-25	89.2	0.1	2.1e-25	89.0	0.1	1.0	1	0	0	1	1	1	1	CheW-like	domain
MCPsignal	PF00015.21	gi|336254893|ref|YP_004598000.1|	-	7.2e-40	136.6	19.6	7.2e-40	136.6	19.6	3.7	1	1	1	3	3	3	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS	PF00989.25	gi|336254893|ref|YP_004598000.1|	-	1.2e-12	47.9	0.0	3.7e-12	46.2	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|336254893|ref|YP_004598000.1|	-	6.6e-12	45.6	1.8	1.4e-10	41.4	1.8	3.1	1	1	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|336254893|ref|YP_004598000.1|	-	2.1e-08	34.3	0.1	1.6e-07	31.6	0.0	2.5	3	0	0	3	3	2	1	PAS	domain
PAS_8	PF13188.7	gi|336254893|ref|YP_004598000.1|	-	2.7e-06	27.3	0.1	3e-05	23.9	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
DUF948	PF06103.11	gi|336254893|ref|YP_004598000.1|	-	1.4e-05	25.2	36.2	9.2e-05	22.6	4.7	5.0	2	2	2	4	4	4	1	Bacterial	protein	of	unknown	function	(DUF948)
EzrA	PF06160.12	gi|336254893|ref|YP_004598000.1|	-	7.3e-05	21.1	18.1	0.0008	17.7	10.6	2.3	2	0	0	2	2	2	2	Septation	ring	formation	regulator,	EzrA
Mod_r	PF07200.13	gi|336254893|ref|YP_004598000.1|	-	0.00044	20.4	13.7	0.23	11.5	0.0	3.3	2	2	1	3	3	3	1	Modifier	of	rudimentary	(Mod(r))	protein
DUF3450	PF11932.8	gi|336254893|ref|YP_004598000.1|	-	0.00048	19.5	22.0	0.0016	17.8	10.0	3.4	1	1	1	3	3	3	2	Protein	of	unknown	function	(DUF3450)
DUF745	PF05335.13	gi|336254893|ref|YP_004598000.1|	-	0.0016	18.2	30.9	0.25	11.0	4.5	3.3	1	1	1	3	3	3	3	Protein	of	unknown	function	(DUF745)
YkyA	PF10368.9	gi|336254893|ref|YP_004598000.1|	-	0.0026	17.4	25.5	0.008	15.9	9.8	3.7	1	1	1	3	3	3	2	Putative	cell-wall	binding	lipoprotein
DUF1664	PF07889.12	gi|336254893|ref|YP_004598000.1|	-	0.0027	17.8	25.4	0.22	11.6	4.9	4.3	2	2	2	4	4	4	2	Protein	of	unknown	function	(DUF1664)
PilJ	PF13675.6	gi|336254893|ref|YP_004598000.1|	-	0.0053	16.8	18.4	3.7	7.6	2.0	5.3	3	2	2	5	5	5	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
MLTR_LBD	PF17765.1	gi|336254893|ref|YP_004598000.1|	-	0.0086	16.2	0.0	0.0086	16.2	0.0	3.6	4	1	0	4	4	3	1	MmyB-like	transcription	regulator	ligand	binding	domain
Baculo_PEP_C	PF04513.12	gi|336254893|ref|YP_004598000.1|	-	0.01	15.9	18.9	0.044	13.8	5.5	3.5	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Spc7	PF08317.11	gi|336254893|ref|YP_004598000.1|	-	0.013	14.4	29.5	0.13	11.1	16.1	3.1	1	1	2	3	3	3	0	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|336254893|ref|YP_004598000.1|	-	0.014	15.4	30.9	0.021	14.8	4.3	4.7	2	2	1	4	4	4	0	Laminin	Domain	II
HAMP	PF00672.25	gi|336254893|ref|YP_004598000.1|	-	0.016	15.6	1.1	0.016	15.6	1.1	4.8	4	2	0	4	4	3	0	HAMP	domain
SesA	PF17107.5	gi|336254893|ref|YP_004598000.1|	-	0.017	15.3	4.8	0.017	15.3	4.8	3.7	1	1	3	4	4	4	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
DUF4047	PF13256.6	gi|336254893|ref|YP_004598000.1|	-	0.021	15.0	2.9	0.049	13.8	2.4	1.9	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4047)
Seryl_tRNA_N	PF02403.22	gi|336254893|ref|YP_004598000.1|	-	0.024	14.8	19.9	0.082	13.1	0.6	4.4	2	2	1	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2009	PF09418.10	gi|336254893|ref|YP_004598000.1|	-	0.031	13.4	2.6	0.045	12.8	2.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2009)
RecG_N	PF17190.4	gi|336254893|ref|YP_004598000.1|	-	0.062	14.0	3.1	73	4.2	0.0	4.7	3	2	3	6	6	6	0	RecG	N-terminal	helical	domain
ATG16	PF08614.11	gi|336254893|ref|YP_004598000.1|	-	0.069	13.4	20.5	0.058	13.6	11.8	2.6	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
IFT57	PF10498.9	gi|336254893|ref|YP_004598000.1|	-	0.075	12.0	15.6	0.43	9.5	13.2	2.4	1	1	3	4	4	4	0	Intra-flagellar	transport	protein	57
DUF489	PF04356.12	gi|336254893|ref|YP_004598000.1|	-	0.093	12.7	6.2	0.042	13.9	3.5	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
RmuC	PF02646.16	gi|336254893|ref|YP_004598000.1|	-	0.11	11.6	14.6	0.9	8.6	2.3	4.3	1	1	3	5	5	5	0	RmuC	family
CdvA	PF18822.1	gi|336254893|ref|YP_004598000.1|	-	0.12	12.2	17.8	2.2	8.1	0.4	4.6	1	1	3	4	4	4	0	CdvA-like	coiled-coil	domain
Fib_alpha	PF08702.10	gi|336254893|ref|YP_004598000.1|	-	0.14	12.3	16.0	0.23	11.7	6.5	4.0	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
DUF677	PF05055.12	gi|336254893|ref|YP_004598000.1|	-	0.16	10.8	18.5	0.17	10.7	3.4	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF677)
TMPIT	PF07851.13	gi|336254893|ref|YP_004598000.1|	-	0.2	10.9	11.8	1.1	8.4	5.6	3.1	2	1	1	3	3	3	0	TMPIT-like	protein
Syntaxin-6_N	PF09177.11	gi|336254893|ref|YP_004598000.1|	-	0.21	12.2	25.1	0.29	11.7	0.2	4.5	2	2	1	3	3	3	0	Syntaxin	6,	N-terminal
COG2	PF06148.11	gi|336254893|ref|YP_004598000.1|	-	0.26	11.4	20.6	0.32	11.1	0.6	4.6	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Gp-FAR-1	PF05823.12	gi|336254893|ref|YP_004598000.1|	-	0.27	11.6	2.5	1.9	8.9	0.7	2.7	1	1	0	2	2	2	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
ApoLp-III	PF07464.11	gi|336254893|ref|YP_004598000.1|	-	0.28	11.3	25.6	0.44	10.6	2.1	4.1	1	1	3	4	4	4	0	Apolipophorin-III	precursor	(apoLp-III)
WXG100	PF06013.12	gi|336254893|ref|YP_004598000.1|	-	0.3	11.3	27.4	0.39	11.0	3.5	6.7	1	1	5	7	7	7	0	Proteins	of	100	residues	with	WXG
AAA_13	PF13166.6	gi|336254893|ref|YP_004598000.1|	-	0.37	9.4	22.6	1.2	7.7	17.6	2.2	1	1	1	2	2	2	0	AAA	domain
T7SS_ESX_EspC	PF10824.8	gi|336254893|ref|YP_004598000.1|	-	0.52	10.8	39.7	0.1	13.1	0.7	6.0	4	2	1	6	6	5	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
MCC-bdg_PDZ	PF10506.9	gi|336254893|ref|YP_004598000.1|	-	0.6	10.2	4.1	1.6	8.8	0.1	3.3	2	1	1	3	3	3	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Ferritin	PF00210.24	gi|336254893|ref|YP_004598000.1|	-	0.62	10.0	18.9	0.25	11.3	4.8	3.7	1	1	2	3	3	3	0	Ferritin-like	domain
P4Ha_N	PF08336.11	gi|336254893|ref|YP_004598000.1|	-	0.86	9.6	10.0	41	4.2	0.0	3.6	2	2	1	3	3	3	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
Mobilization_B	PF17511.2	gi|336254893|ref|YP_004598000.1|	-	0.9	9.9	26.1	0.093	13.1	2.9	4.5	3	1	2	5	5	4	0	Mobilization	protein	B
APG17	PF04108.12	gi|336254893|ref|YP_004598000.1|	-	1	8.4	25.6	0.098	11.8	4.7	3.3	1	1	2	3	3	2	0	Autophagy	protein	Apg17
BLOC1_2	PF10046.9	gi|336254893|ref|YP_004598000.1|	-	1.2	9.5	22.4	2.3	8.6	4.9	4.5	3	1	1	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
T3SSipB	PF16535.5	gi|336254893|ref|YP_004598000.1|	-	1.6	9.2	32.1	5.6	7.4	9.3	3.7	1	1	1	3	3	3	0	Type	III	cell	invasion	protein	SipB
DUF16	PF01519.16	gi|336254893|ref|YP_004598000.1|	-	1.7	9.2	20.6	2	8.9	0.9	4.5	1	1	3	4	4	4	0	Protein	of	unknown	function	DUF16
Prominin	PF05478.11	gi|336254893|ref|YP_004598000.1|	-	1.7	6.5	9.3	4.4	5.1	8.2	2.0	1	1	0	1	1	1	0	Prominin
Goodbye	PF17109.5	gi|336254893|ref|YP_004598000.1|	-	1.8	9.1	10.2	1	9.8	1.2	3.5	2	2	1	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
DUF4795	PF16043.5	gi|336254893|ref|YP_004598000.1|	-	1.9	8.0	22.1	1.7	8.2	12.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
TMP_2	PF06791.13	gi|336254893|ref|YP_004598000.1|	-	2.1	8.0	21.0	2.2	7.9	8.0	3.2	1	1	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
TPR_MLP1_2	PF07926.12	gi|336254893|ref|YP_004598000.1|	-	2.4	8.2	31.1	1.6	8.8	4.9	3.3	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
COG5	PF10392.9	gi|336254893|ref|YP_004598000.1|	-	2.5	8.3	6.7	6	7.1	1.5	3.3	2	2	2	4	4	4	0	Golgi	transport	complex	subunit	5
Nmad5	PF18757.1	gi|336254893|ref|YP_004598000.1|	-	2.9	8.0	11.8	0.31	11.2	4.6	2.8	1	1	1	3	3	3	0	Nucleotide	modification	associated	domain	5
DinB	PF05163.12	gi|336254893|ref|YP_004598000.1|	-	3.6	7.5	9.8	4.4	7.2	0.2	2.7	2	1	0	2	2	2	0	DinB	family
FUSC	PF04632.12	gi|336254893|ref|YP_004598000.1|	-	3.9	5.9	21.3	1.9	6.9	5.2	2.2	1	1	0	2	2	2	0	Fusaric	acid	resistance	protein	family
UPF0242	PF06785.11	gi|336254893|ref|YP_004598000.1|	-	4.2	7.4	17.2	6.4	6.8	11.3	2.7	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4200	PF13863.6	gi|336254893|ref|YP_004598000.1|	-	4.2	7.8	13.3	1.5	9.2	7.3	3.0	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4200)
HMMR_N	PF15905.5	gi|336254893|ref|YP_004598000.1|	-	4.5	6.7	19.2	1.2	8.5	12.0	2.6	1	1	0	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
Atg14	PF10186.9	gi|336254893|ref|YP_004598000.1|	-	5.1	6.1	7.5	19	4.2	7.5	1.9	1	1	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Syntaxin_2	PF14523.6	gi|336254893|ref|YP_004598000.1|	-	5.2	7.5	15.7	7	7.1	2.2	4.5	2	2	2	5	5	5	0	Syntaxin-like	protein
DUF2203	PF09969.9	gi|336254893|ref|YP_004598000.1|	-	7.5	7.3	26.7	9.9	6.9	2.2	4.5	2	2	2	4	4	4	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4665	PF15679.5	gi|336254893|ref|YP_004598000.1|	-	7.6	7.2	5.9	7.6	7.2	1.8	2.9	3	1	1	4	4	3	0	Domain	of	unknown	function	(DUF4665)
CorA	PF01544.18	gi|336254893|ref|YP_004598000.1|	-	8.7	5.6	24.1	1.7	7.9	1.2	3.7	1	1	2	3	3	3	0	CorA-like	Mg2+	transporter	protein
CREPT	PF16566.5	gi|336254893|ref|YP_004598000.1|	-	9.7	6.4	11.8	3.1	8.0	3.7	3.2	1	1	2	3	3	3	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
CheW	PF01584.19	gi|336254894|ref|YP_004598001.1|	-	3.1e-23	82.0	0.2	4.7e-23	81.4	0.2	1.3	1	0	0	1	1	1	1	CheW-like	domain
AAA_31	PF13614.6	gi|336254895|ref|YP_004598002.1|	-	3.4e-39	134.6	0.0	4.9e-39	134.1	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|336254895|ref|YP_004598002.1|	-	1.3e-21	77.0	0.0	7.6e-16	58.3	0.0	2.2	2	0	0	2	2	2	2	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|336254895|ref|YP_004598002.1|	-	7.8e-10	38.6	0.1	1.7e-09	37.5	0.1	1.8	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|336254895|ref|YP_004598002.1|	-	3.6e-09	36.3	0.5	1.4e-05	24.5	0.1	2.3	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|336254895|ref|YP_004598002.1|	-	4.4e-07	29.6	0.1	1.3e-06	28.1	0.0	1.7	2	1	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|336254895|ref|YP_004598002.1|	-	4.6e-07	29.3	0.1	1.5e-06	27.7	0.1	1.8	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|336254895|ref|YP_004598002.1|	-	1.4e-05	24.7	0.0	9.6e-05	22.0	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ATP_bind_1	PF03029.17	gi|336254895|ref|YP_004598002.1|	-	8.1e-05	22.5	0.2	0.083	12.7	0.0	2.3	2	1	0	2	2	2	2	Conserved	hypothetical	ATP	binding	protein
CLP1_P	PF16575.5	gi|336254895|ref|YP_004598002.1|	-	0.0014	18.4	0.0	0.0033	17.2	0.0	1.5	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
YcaO	PF02624.16	gi|336254895|ref|YP_004598002.1|	-	0.0026	17.1	0.1	0.037	13.3	0.0	2.2	1	1	1	2	2	2	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Thymidylate_kin	PF02223.17	gi|336254895|ref|YP_004598002.1|	-	0.033	13.9	0.2	2	8.1	0.0	2.2	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_24	PF13479.6	gi|336254895|ref|YP_004598002.1|	-	0.05	13.3	0.0	1.1	9.0	0.0	2.4	1	1	1	2	2	2	0	AAA	domain
VirC1	PF07015.11	gi|336254895|ref|YP_004598002.1|	-	0.053	12.8	0.1	0.19	11.0	0.0	1.8	2	0	0	2	2	2	0	VirC1	protein
AAA_25	PF13481.6	gi|336254895|ref|YP_004598002.1|	-	0.063	12.8	0.4	0.73	9.4	0.4	2.3	1	1	0	1	1	1	0	AAA	domain
LpxK	PF02606.14	gi|336254895|ref|YP_004598002.1|	-	0.12	11.5	0.1	0.44	9.6	0.1	1.8	2	0	0	2	2	2	0	Tetraacyldisaccharide-1-P	4'-kinase
SRP54	PF00448.22	gi|336254895|ref|YP_004598002.1|	-	0.13	11.9	0.1	0.49	10.0	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MeaB	PF03308.16	gi|336254895|ref|YP_004598002.1|	-	0.14	11.1	0.1	0.25	10.3	0.1	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CheB_methylest	PF01339.17	gi|336254897|ref|YP_004598004.1|	-	2.7e-52	176.9	0.4	4.9e-52	176.1	0.4	1.4	1	0	0	1	1	1	1	CheB	methylesterase
Response_reg	PF00072.24	gi|336254897|ref|YP_004598004.1|	-	8.3e-23	80.7	0.2	2e-22	79.4	0.2	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF2023	PF09633.10	gi|336254897|ref|YP_004598004.1|	-	0.021	14.9	0.0	1.3	9.2	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2023)
CheW	PF01584.19	gi|336254898|ref|YP_004598005.1|	-	1.1e-19	70.5	0.7	2.8e-19	69.1	0.7	1.8	1	0	0	1	1	1	1	CheW-like	domain
HATPase_c	PF02518.26	gi|336254898|ref|YP_004598005.1|	-	4.7e-19	69.0	0.3	4.7e-19	69.0	0.3	2.5	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Hpt	PF01627.23	gi|336254898|ref|YP_004598005.1|	-	2e-18	66.4	1.0	2.6e-17	62.8	0.0	2.7	2	0	0	2	2	2	1	Hpt	domain
H-kinase_dim	PF02895.14	gi|336254898|ref|YP_004598005.1|	-	9.2e-08	32.4	3.4	2.7e-07	30.9	3.4	1.9	1	0	0	1	1	1	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c_3	PF13589.6	gi|336254898|ref|YP_004598005.1|	-	0.0024	17.7	0.4	0.0069	16.2	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
P2	PF07194.11	gi|336254898|ref|YP_004598005.1|	-	0.003	17.6	0.1	0.024	14.7	0.0	2.7	2	0	0	2	2	2	1	P2	response	regulator	binding	domain
HATPase_c_2	PF13581.6	gi|336254898|ref|YP_004598005.1|	-	0.06	13.3	2.2	0.15	12.0	0.1	2.8	2	1	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
DUF4530	PF15039.6	gi|336254898|ref|YP_004598005.1|	-	7.7	6.7	6.4	0.75	10.0	0.8	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4530)
Sigma70_ner	PF04546.13	gi|336254898|ref|YP_004598005.1|	-	9.6	6.0	21.2	0.1	12.4	2.2	3.1	3	0	0	3	3	3	0	Sigma-70,	non-essential	region
Response_reg	PF00072.24	gi|336254899|ref|YP_004598006.1|	-	3.4e-29	101.3	1.2	3.8e-29	101.1	1.2	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CheC	PF04509.12	gi|336254900|ref|YP_004598007.1|	-	9.1e-21	73.5	0.4	2.4e-09	36.9	0.0	3.5	3	0	0	3	3	3	2	CheC-like	family
CheX	PF13690.6	gi|336254900|ref|YP_004598007.1|	-	3.3e-15	56.0	0.1	1.1e-06	28.7	0.0	2.4	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
CheF-arch	PF04283.12	gi|336254901|ref|YP_004598008.1|	-	1e-67	228.1	1.9	2.5e-67	226.8	0.9	1.9	2	1	1	3	3	3	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
HTH_45	PF14947.6	gi|336254901|ref|YP_004598008.1|	-	0.054	13.5	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
T2SSE	PF00437.20	gi|336254902|ref|YP_004598009.1|	-	1.7e-42	145.4	0.0	2.5e-42	144.8	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|336254902|ref|YP_004598009.1|	-	2.8e-05	24.6	0.1	0.0011	19.3	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|336254902|ref|YP_004598009.1|	-	0.00081	19.2	0.1	0.59	9.8	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|336254902|ref|YP_004598009.1|	-	0.0056	17.2	0.0	0.041	14.4	0.0	2.3	2	1	0	2	2	2	1	ABC	transporter
AAA_7	PF12775.7	gi|336254902|ref|YP_004598009.1|	-	0.0094	15.5	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_29	PF13555.6	gi|336254902|ref|YP_004598009.1|	-	0.016	15.0	0.0	0.033	13.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Dynamin_N	PF00350.23	gi|336254902|ref|YP_004598009.1|	-	0.032	14.3	0.0	0.077	13.1	0.0	1.6	1	0	0	1	1	1	0	Dynamin	family
AAA_22	PF13401.6	gi|336254902|ref|YP_004598009.1|	-	0.068	13.4	0.0	0.19	12.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AIG1	PF04548.16	gi|336254902|ref|YP_004598009.1|	-	0.085	12.2	0.0	0.24	10.7	0.0	1.8	1	0	0	1	1	1	0	AIG1	family
Microtub_bd	PF16796.5	gi|336254902|ref|YP_004598009.1|	-	0.14	12.1	0.0	0.39	10.6	0.0	1.7	1	1	0	1	1	1	0	Microtubule	binding
AAA_23	PF13476.6	gi|336254902|ref|YP_004598009.1|	-	0.51	10.8	2.1	3.3	8.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|336254903|ref|YP_004598010.1|	-	1.9e-15	56.8	0.2	2.9e-15	56.2	0.2	1.2	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|336254903|ref|YP_004598010.1|	-	8e-05	22.3	0.1	0.00021	20.9	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|336254903|ref|YP_004598010.1|	-	0.00018	20.9	0.8	0.0012	18.2	0.8	2.0	1	1	0	1	1	1	1	Rad51
TsaE	PF02367.17	gi|336254903|ref|YP_004598010.1|	-	0.0008	19.4	0.1	0.0071	16.3	0.0	2.1	1	1	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|336254903|ref|YP_004598010.1|	-	0.0014	18.6	0.2	0.0097	15.8	0.2	2.1	1	1	0	1	1	1	1	NACHT	domain
PAXNEB	PF05625.11	gi|336254903|ref|YP_004598010.1|	-	0.0064	15.7	0.0	1.9	7.6	0.0	2.1	2	0	0	2	2	2	2	PAXNEB	protein
TIP49	PF06068.13	gi|336254903|ref|YP_004598010.1|	-	0.011	14.9	0.0	2	7.5	0.0	2.2	2	0	0	2	2	2	0	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|336254903|ref|YP_004598010.1|	-	0.016	15.5	0.1	0.032	14.5	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|336254903|ref|YP_004598010.1|	-	0.043	13.4	0.1	0.49	10.0	0.1	2.2	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
IstB_IS21	PF01695.17	gi|336254903|ref|YP_004598010.1|	-	0.049	13.4	0.1	0.13	12.0	0.0	1.5	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|336254903|ref|YP_004598010.1|	-	0.061	13.7	0.1	0.12	12.8	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
APS_kinase	PF01583.20	gi|336254903|ref|YP_004598010.1|	-	0.069	13.1	0.2	0.23	11.3	0.0	1.9	2	0	0	2	2	2	0	Adenylylsulphate	kinase
AAA	PF00004.29	gi|336254903|ref|YP_004598010.1|	-	0.074	13.5	0.3	0.19	12.1	0.3	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MipZ	PF09140.11	gi|336254903|ref|YP_004598010.1|	-	0.094	12.0	0.0	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|336254903|ref|YP_004598010.1|	-	0.11	11.6	0.0	0.16	11.1	0.0	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
FF	PF01846.19	gi|336254903|ref|YP_004598010.1|	-	0.17	12.1	0.1	0.36	11.0	0.1	1.5	1	0	0	1	1	1	0	FF	domain
Arch_fla_DE	PF04659.13	gi|336254904|ref|YP_004598011.1|	-	1.4e-24	85.7	0.0	2.8e-24	84.8	0.0	1.5	1	0	0	1	1	1	1	Archaeal	flagella	protein
FlaC_arch	PF05377.11	gi|336254904|ref|YP_004598011.1|	-	1.2e-20	73.7	4.9	2.1e-20	72.8	4.9	1.5	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
Sec34	PF04136.15	gi|336254904|ref|YP_004598011.1|	-	0.0022	17.9	0.0	0.0035	17.2	0.0	1.2	1	0	0	1	1	1	1	Sec34-like	family
Dynactin_p22	PF07426.11	gi|336254904|ref|YP_004598011.1|	-	0.021	14.7	0.5	0.033	14.1	0.5	1.2	1	0	0	1	1	1	0	Dynactin	subunit	p22
CcmH	PF03918.14	gi|336254904|ref|YP_004598011.1|	-	0.046	13.0	0.0	0.081	12.2	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	C	biogenesis	protein
CENP-F_leu_zip	PF10473.9	gi|336254904|ref|YP_004598011.1|	-	0.059	13.4	0.8	0.1	12.6	0.8	1.3	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ZapB	PF06005.12	gi|336254904|ref|YP_004598011.1|	-	0.078	13.4	1.5	0.14	12.7	1.5	1.3	1	0	0	1	1	1	0	Cell	division	protein	ZapB
Fmp27_WPPW	PF10359.9	gi|336254904|ref|YP_004598011.1|	-	0.1	11.5	0.0	0.17	10.7	0.0	1.3	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
XhlA	PF10779.9	gi|336254904|ref|YP_004598011.1|	-	0.18	12.0	2.6	0.53	10.5	2.6	1.8	1	0	0	1	1	1	0	Haemolysin	XhlA
LPP	PF04728.13	gi|336254904|ref|YP_004598011.1|	-	0.52	10.8	3.1	0.59	10.6	0.4	2.6	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
bZIP_1	PF00170.21	gi|336254904|ref|YP_004598011.1|	-	0.72	10.0	1.4	1.6	8.9	0.5	1.7	1	1	1	2	2	2	0	bZIP	transcription	factor
T2SSF	PF00482.23	gi|336254907|ref|YP_004598014.1|	-	1.8e-16	60.2	2.4	4.6e-12	46.0	0.7	3.6	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
DUF599	PF04654.12	gi|336254907|ref|YP_004598014.1|	-	0.0013	18.2	2.8	0.0049	16.3	2.8	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF599
AAA_32	PF13654.6	gi|336254907|ref|YP_004598014.1|	-	0.048	12.5	0.2	0.074	11.8	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
Arch_fla_DE	PF04659.13	gi|336254908|ref|YP_004598015.1|	-	1.9e-27	95.0	0.0	3.5e-27	94.1	0.0	1.5	1	0	0	1	1	1	1	Archaeal	flagella	protein
FlaC_arch	PF05377.11	gi|336254908|ref|YP_004598015.1|	-	3.1e-20	72.3	1.4	6.6e-20	71.3	1.4	1.6	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
Fmp27_WPPW	PF10359.9	gi|336254908|ref|YP_004598015.1|	-	0.056	12.3	0.0	0.081	11.8	0.0	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
bZIP_1	PF00170.21	gi|336254908|ref|YP_004598015.1|	-	0.062	13.4	0.1	0.11	12.6	0.1	1.3	1	0	0	1	1	1	0	bZIP	transcription	factor
Prefoldin	PF02996.17	gi|336254908|ref|YP_004598015.1|	-	0.13	12.2	2.2	0.63	10.0	0.1	2.2	2	0	0	2	2	2	0	Prefoldin	subunit
DUF812	PF05667.11	gi|336254908|ref|YP_004598015.1|	-	0.21	10.4	0.2	0.32	9.8	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
XhlA	PF10779.9	gi|336254908|ref|YP_004598015.1|	-	10	6.4	6.6	0.6	10.4	1.0	1.9	2	0	0	2	2	2	0	Haemolysin	XhlA
Arch_flagellin	PF01917.16	gi|336254909|ref|YP_004598016.1|	-	3.5e-13	50.1	11.7	4.1e-13	49.8	11.7	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
F420H2_quin_red	PF04075.14	gi|336254909|ref|YP_004598016.1|	-	0.027	14.6	0.2	0.032	14.3	0.2	1.3	1	0	0	1	1	1	0	F420H(2)-dependent	quinone	reductase
Arch_flagellin	PF01917.16	gi|336254910|ref|YP_004598017.1|	-	6.3e-09	36.2	9.9	7.6e-09	36.0	9.9	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|336254911|ref|YP_004598018.1|	-	2.7e-42	144.7	7.2	3.1e-42	144.5	7.2	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|336254912|ref|YP_004598019.1|	-	3.6e-43	147.6	12.7	4.2e-43	147.4	12.7	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF296	PF03479.15	gi|336254912|ref|YP_004598019.1|	-	0.067	13.6	0.4	0.15	12.4	0.4	1.7	1	1	0	1	1	1	0	Plants	and	Prokaryotes	Conserved	(PCC)	domain
Pilin_N	PF07790.11	gi|336254912|ref|YP_004598019.1|	-	2.5	9.1	9.3	0.35	11.8	3.0	2.6	2	1	1	3	3	3	0	Archaeal	Type	IV	pilin,	N-terminal
DUF2197	PF09963.9	gi|336254913|ref|YP_004598020.1|	-	0.0024	18.1	0.4	0.003	17.8	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
zinc_ribbon_12	PF11331.8	gi|336254913|ref|YP_004598020.1|	-	0.015	15.1	0.1	1.5	8.7	0.0	2.1	2	0	0	2	2	2	0	Probable	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|336254913|ref|YP_004598020.1|	-	0.051	13.2	1.1	0.52	9.9	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
CheF-arch	PF04283.12	gi|336254914|ref|YP_004598021.1|	-	8.9e-71	238.1	2.7	1.2e-70	237.7	2.7	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
Vps36_ESCRT-II	PF11605.8	gi|336254914|ref|YP_004598021.1|	-	0.016	15.4	0.0	0.049	13.8	0.0	1.8	1	0	0	1	1	1	0	Vacuolar	protein	sorting	protein	36	Vps36
DUF903	PF06004.12	gi|336254914|ref|YP_004598021.1|	-	0.027	14.4	2.4	0.55	10.2	0.0	3.8	4	0	0	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF903)
bPH_4	PF06713.11	gi|336254914|ref|YP_004598021.1|	-	0.051	13.7	0.1	0.13	12.3	0.1	1.8	1	0	0	1	1	1	0	Bacterial	PH	domain
HEAT_2	PF13646.6	gi|336254915|ref|YP_004598022.1|	-	4.9e-54	180.7	27.0	3.9e-15	56.0	0.5	5.6	2	1	4	6	6	6	6	HEAT	repeats
HEAT	PF02985.22	gi|336254915|ref|YP_004598022.1|	-	1.4e-24	84.1	10.7	0.0032	17.6	0.0	9.6	10	0	0	10	10	10	6	HEAT	repeat
HEAT_EZ	PF13513.6	gi|336254915|ref|YP_004598022.1|	-	2.3e-21	75.9	17.3	0.00057	20.3	0.0	7.5	7	1	1	8	8	8	6	HEAT-like	repeat
HEAT_PBS	PF03130.16	gi|336254915|ref|YP_004598022.1|	-	5e-21	73.2	28.7	0.0023	18.4	0.8	10.3	10	0	0	10	10	10	6	PBS	lyase	HEAT-like	repeat
Arm	PF00514.23	gi|336254915|ref|YP_004598022.1|	-	1.6e-15	56.5	2.7	0.00058	19.8	0.0	7.8	7	2	3	10	10	10	3	Armadillo/beta-catenin-like	repeat
Adaptin_N	PF01602.20	gi|336254915|ref|YP_004598022.1|	-	1.3e-08	33.9	0.0	0.00015	20.5	0.1	4.2	3	1	1	4	4	4	2	Adaptin	N	terminal	region
Cnd1	PF12717.7	gi|336254915|ref|YP_004598022.1|	-	1.2e-07	31.9	4.6	0.09	12.8	0.0	5.3	1	1	4	6	6	6	2	non-SMC	mitotic	condensation	complex	subunit	1
RasGEF_N_2	PF14663.6	gi|336254915|ref|YP_004598022.1|	-	0.00045	20.6	0.4	5.4	7.5	0.0	4.5	3	1	1	5	5	5	1	Rapamycin-insensitive	companion	of	mTOR	RasGEF_N	domain
DUF3458_C	PF17432.2	gi|336254915|ref|YP_004598022.1|	-	0.014	14.8	0.6	0.014	14.8	0.6	1.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3458_C)	ARM	repeats
CLASP_N	PF12348.8	gi|336254915|ref|YP_004598022.1|	-	0.096	12.2	0.1	25	4.3	0.0	3.2	3	0	0	3	3	3	0	CLASP	N	terminal
ALF	PF03752.13	gi|336254915|ref|YP_004598022.1|	-	2.4	8.2	12.1	2.3	8.2	1.9	4.2	4	0	0	4	4	4	0	Short	repeats	of	unknown	function
HTH_31	PF13560.6	gi|336254915|ref|YP_004598022.1|	-	5	7.6	7.6	8.2	6.9	0.1	3.7	3	1	1	4	4	4	0	Helix-turn-helix	domain
IMUP	PF15761.5	gi|336254916|ref|YP_004598023.1|	-	0.11	13.1	5.1	0.18	12.5	5.1	1.4	1	0	0	1	1	1	0	Immortalisation	up-regulated	protein
CARDB	PF07705.11	gi|336254917|ref|YP_004598024.1|	-	1.5e-07	31.6	18.7	0.00094	19.4	1.0	5.4	3	2	3	6	6	6	4	CARDB
YacG	PF03884.14	gi|336254918|ref|YP_004598025.1|	-	0.92	9.3	3.3	14	5.5	3.3	2.2	1	1	0	1	1	1	0	DNA	gyrase	inhibitor	YacG
PadR	PF03551.14	gi|336254919|ref|YP_004598026.1|	-	1.1e-08	34.9	0.1	2.1e-08	34.0	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|336254919|ref|YP_004598026.1|	-	0.11	13.2	0.1	0.23	12.1	0.1	1.6	2	0	0	2	2	2	0	Replication	terminator	protein
DUF3708	PF12501.8	gi|336254919|ref|YP_004598026.1|	-	0.2	11.4	0.6	0.31	10.8	0.6	1.6	1	1	0	1	1	1	0	Phosphate	ATP-binding	cassette	transporter
Ribosomal_S6e	PF01092.19	gi|336254921|ref|YP_004598028.1|	-	1.7e-41	141.1	0.0	1.9e-41	140.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
TetR_C_6	PF13977.6	gi|336254923|ref|YP_004598030.1|	-	6e-14	52.3	3.4	6e-14	52.3	3.4	1.8	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|336254923|ref|YP_004598030.1|	-	5.1e-10	39.0	0.0	1.4e-09	37.6	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|336254923|ref|YP_004598030.1|	-	4e-06	27.0	5.9	4e-06	27.0	5.9	2.2	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|336254923|ref|YP_004598030.1|	-	1.1e-05	25.7	0.3	2.9e-05	24.3	0.3	1.9	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|336254923|ref|YP_004598030.1|	-	5.9e-05	23.1	0.1	0.00013	22.0	0.1	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|336254923|ref|YP_004598030.1|	-	0.00017	21.6	0.0	0.00044	20.3	0.0	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_5	PF08360.11	gi|336254923|ref|YP_004598030.1|	-	0.00035	20.7	0.0	0.00057	20.1	0.0	1.3	1	0	0	1	1	1	1	QacR-like	protein,	C-terminal	region
TetR_C_11	PF16859.5	gi|336254923|ref|YP_004598030.1|	-	0.0075	16.6	1.6	0.0075	16.6	1.6	3.1	2	1	0	3	3	3	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|336254923|ref|YP_004598030.1|	-	0.067	13.2	0.3	0.16	12.0	0.3	1.6	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_13	PF16925.5	gi|336254923|ref|YP_004598030.1|	-	0.091	12.7	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|336254923|ref|YP_004598030.1|	-	0.091	13.4	0.0	0.18	12.4	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|336254923|ref|YP_004598030.1|	-	0.13	12.4	0.0	0.25	11.5	0.0	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TM2	PF05154.16	gi|336254925|ref|YP_004598032.1|	-	0.039	14.3	1.3	0.039	14.3	1.3	1.6	2	0	0	2	2	2	0	TM2	domain
SHOCT	PF09851.9	gi|336254926|ref|YP_004598033.1|	-	2.6e-06	27.0	0.2	4.1e-06	26.4	0.2	1.4	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|336254926|ref|YP_004598033.1|	-	0.0089	16.1	0.3	0.018	15.1	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
CCB1	PF12046.8	gi|336254926|ref|YP_004598033.1|	-	0.024	14.0	1.5	0.059	12.7	0.0	1.9	1	1	1	2	2	2	0	Cofactor	assembly	of	complex	C	subunit	B
DUF4834	PF16118.5	gi|336254926|ref|YP_004598033.1|	-	0.057	14.4	1.8	1.3	10.0	1.8	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
DUF4083	PF13314.6	gi|336254926|ref|YP_004598033.1|	-	0.065	13.2	5.9	0.24	11.4	0.1	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4083)
FtsH_ext	PF06480.15	gi|336254926|ref|YP_004598033.1|	-	0.066	13.6	0.1	0.16	12.3	0.1	1.8	1	1	0	1	1	1	0	FtsH	Extracellular
GvpG	PF05120.12	gi|336254926|ref|YP_004598033.1|	-	0.067	13.2	0.2	0.1	12.6	0.2	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Halogen_Hydrol	PF10112.9	gi|336254926|ref|YP_004598033.1|	-	0.15	12.0	0.0	0.18	11.8	0.0	1.2	1	0	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
DUF2207	PF09972.9	gi|336254926|ref|YP_004598033.1|	-	0.21	10.3	0.0	0.21	10.3	0.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Trp_oprn_chp	PF09534.10	gi|336254926|ref|YP_004598033.1|	-	0.3	10.9	3.0	0.46	10.3	1.3	1.8	1	1	1	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
IncF	PF17626.2	gi|336254926|ref|YP_004598033.1|	-	0.72	10.2	7.1	1	9.7	7.1	1.2	1	0	0	1	1	1	0	Inclusion	membrane	protein	F
Phage_holin_3_6	PF07332.11	gi|336254926|ref|YP_004598033.1|	-	0.75	9.9	10.6	1	9.4	10.6	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Beta-Casp	PF10996.8	gi|336254927|ref|YP_004598034.1|	-	6.9e-13	48.9	0.0	1.4e-12	47.9	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|336254927|ref|YP_004598034.1|	-	8.7e-11	41.6	0.0	3.5e-10	39.7	0.0	1.9	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|336254927|ref|YP_004598034.1|	-	2.8e-09	37.3	9.1	3.4e-09	37.0	7.2	2.0	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336254927|ref|YP_004598034.1|	-	1.5e-07	31.2	1.0	5e-07	29.4	0.3	2.0	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|336254927|ref|YP_004598034.1|	-	0.0011	18.4	0.0	0.002	17.6	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336254927|ref|YP_004598034.1|	-	0.028	14.3	0.0	0.093	12.6	0.0	1.8	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DAO	PF01266.24	gi|336254930|ref|YP_004598037.1|	-	2.7e-43	148.9	2.4	3e-43	148.8	2.4	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|336254930|ref|YP_004598037.1|	-	0.00025	20.5	0.0	0.00038	19.9	0.0	1.2	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
HI0933_like	PF03486.14	gi|336254930|ref|YP_004598037.1|	-	0.0039	15.9	0.2	0.014	14.1	0.0	1.8	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|336254930|ref|YP_004598037.1|	-	0.05	12.8	0.0	0.81	8.9	0.0	2.5	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|336254930|ref|YP_004598037.1|	-	0.18	11.0	0.3	0.45	9.7	0.3	1.6	2	0	0	2	2	2	0	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|336254930|ref|YP_004598037.1|	-	0.19	10.9	0.0	0.37	10.0	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|336254930|ref|YP_004598037.1|	-	0.21	11.6	0.1	0.21	11.6	0.1	3.0	3	0	0	3	3	3	0	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|336254930|ref|YP_004598037.1|	-	1.4	9.2	5.1	1.3	9.3	0.6	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
DUF5305	PF17231.2	gi|336254931|ref|YP_004598038.1|	-	2.3e-51	174.3	0.0	7.8e-51	172.6	0.0	1.8	2	0	0	2	2	2	1	Family	of	unknown	function	(DUF5305)
Peptidase_S24	PF00717.23	gi|336254932|ref|YP_004598039.1|	-	2.8e-07	30.4	0.0	7.3e-07	29.1	0.0	1.7	1	1	0	1	1	1	1	Peptidase	S24-like
DUF1102	PF06510.11	gi|336254935|ref|YP_004598042.1|	-	0.00016	21.9	1.5	0.00023	21.4	1.5	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1102)
Cupin_3	PF05899.12	gi|336254935|ref|YP_004598042.1|	-	0.07	12.8	1.7	0.41	10.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF861)
DUF4906	PF16249.5	gi|336254936|ref|YP_004598043.1|	-	0.051	13.4	2.6	0.052	13.4	0.3	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4906)
ASH	PF15780.5	gi|336254936|ref|YP_004598043.1|	-	0.065	13.4	1.1	0.11	12.7	1.1	1.4	1	0	0	1	1	1	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
POC3_POC4	PF10448.9	gi|336254936|ref|YP_004598043.1|	-	0.89	9.6	5.6	0.82	9.7	0.3	2.3	1	1	0	2	2	2	0	20S	proteasome	chaperone	assembly	proteins	3	and	4
SLAIN	PF15301.6	gi|336254936|ref|YP_004598043.1|	-	1.1	8.5	2.8	1.2	8.3	2.8	1.1	1	0	0	1	1	1	0	SLAIN	motif-containing	family
Gp5_C	PF06715.12	gi|336254936|ref|YP_004598043.1|	-	7.2	7.0	14.4	18	5.7	5.5	3.7	4	0	0	4	4	4	0	Gp5	C-terminal	repeat	(3	copies)
HTH_20	PF12840.7	gi|336254937|ref|YP_004598044.1|	-	0.13	12.4	0.2	0.42	10.7	0.2	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
Bac_luciferase	PF00296.20	gi|336254939|ref|YP_004598046.1|	-	1.4e-43	149.5	6.3	1.8e-43	149.2	6.3	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Radical_SAM	PF04055.21	gi|336254939|ref|YP_004598046.1|	-	0.0049	17.3	0.1	4.2	7.7	0.0	2.3	1	1	0	2	2	2	2	Radical	SAM	superfamily
TetR_C_16	PF17920.1	gi|336254939|ref|YP_004598046.1|	-	0.096	12.9	0.1	0.28	11.4	0.0	1.8	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
Peptidase_M42	PF05343.14	gi|336254940|ref|YP_004598047.1|	-	4.4e-80	268.8	0.1	5.1e-80	268.6	0.1	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M18	PF02127.15	gi|336254940|ref|YP_004598047.1|	-	0.12	11.1	0.0	4.6	5.9	0.0	2.1	1	1	0	2	2	2	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
Aconitase	PF00330.20	gi|336254941|ref|YP_004598048.1|	-	1.3e-108	364.0	0.2	7.4e-107	358.2	0.2	2.2	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|336254941|ref|YP_004598048.1|	-	4e-20	72.5	0.0	8e-20	71.5	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.13	gi|336254941|ref|YP_004598048.1|	-	0.0023	16.7	0.0	0.0035	16.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
dUTPase	PF00692.19	gi|336254942|ref|YP_004598049.1|	-	1.1e-11	44.6	0.0	1.6e-11	44.0	0.0	1.3	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|336254942|ref|YP_004598049.1|	-	0.0069	15.2	0.0	0.0086	14.9	0.0	1.3	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
YdjM	PF04307.14	gi|336254943|ref|YP_004598050.1|	-	0.25	10.6	21.1	9.6	5.5	20.9	2.6	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
CopD	PF05425.13	gi|336254944|ref|YP_004598051.1|	-	4e-05	24.0	8.5	4e-05	24.0	8.5	1.9	2	0	0	2	2	2	1	Copper	resistance	protein	D
IncD	PF17628.2	gi|336254944|ref|YP_004598051.1|	-	0.66	9.8	7.5	0.13	12.1	2.9	2.1	1	1	2	3	3	3	0	Inclusion	membrane	protein	D
NAD_binding_2	PF03446.15	gi|336254946|ref|YP_004598053.1|	-	2.1e-38	132.0	0.0	3e-38	131.5	0.0	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.19	gi|336254946|ref|YP_004598053.1|	-	4.3e-24	85.4	0.0	6.4e-24	84.8	0.0	1.3	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.17	gi|336254946|ref|YP_004598053.1|	-	3e-06	27.7	0.0	4.6e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_11	PF14833.6	gi|336254946|ref|YP_004598053.1|	-	2.4e-05	24.5	0.1	0.0049	17.1	0.0	3.1	2	1	1	3	3	3	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
3HCDH_N	PF02737.18	gi|336254946|ref|YP_004598053.1|	-	0.00028	20.8	0.1	0.00038	20.4	0.1	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|336254946|ref|YP_004598053.1|	-	0.00037	20.7	0.2	0.00074	19.8	0.0	1.6	2	0	0	2	2	2	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.19	gi|336254946|ref|YP_004598053.1|	-	0.00096	18.5	0.0	0.0013	18.1	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336254946|ref|YP_004598053.1|	-	0.022	14.3	0.0	0.061	12.9	0.1	1.7	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DapB_N	PF01113.20	gi|336254946|ref|YP_004598053.1|	-	0.34	11.0	1.2	0.83	9.8	1.2	1.7	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Cdc6_C	PF09079.11	gi|336254947|ref|YP_004598054.1|	-	3.3e-21	75.0	0.6	1.3e-20	73.1	0.1	2.4	3	0	0	3	3	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336254947|ref|YP_004598054.1|	-	1.2e-11	45.1	0.0	2.7e-11	43.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336254947|ref|YP_004598054.1|	-	8e-10	39.4	0.0	2.7e-08	34.4	0.0	2.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336254947|ref|YP_004598054.1|	-	1.1e-06	29.1	0.0	3e-06	27.7	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|336254947|ref|YP_004598054.1|	-	0.00082	18.8	0.0	0.0014	18.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|336254947|ref|YP_004598054.1|	-	0.00091	19.2	0.0	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|336254947|ref|YP_004598054.1|	-	0.0019	18.2	0.0	0.0036	17.2	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_5	PF07728.14	gi|336254947|ref|YP_004598054.1|	-	0.0059	16.6	0.0	0.041	13.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|336254947|ref|YP_004598054.1|	-	0.012	14.8	0.0	0.02	14.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|336254947|ref|YP_004598054.1|	-	0.015	14.5	0.0	0.1	11.8	0.0	2.2	3	0	0	3	3	3	0	NB-ARC	domain
AAA_18	PF13238.6	gi|336254947|ref|YP_004598054.1|	-	0.019	15.5	0.2	0.32	11.5	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|336254947|ref|YP_004598054.1|	-	0.044	13.4	0.1	0.47	10.0	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|336254947|ref|YP_004598054.1|	-	0.048	14.1	0.0	0.094	13.1	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
KAP_NTPase	PF07693.14	gi|336254947|ref|YP_004598054.1|	-	0.048	12.9	0.0	1.4	8.0	0.0	2.2	1	1	1	2	2	2	0	KAP	family	P-loop	domain
TrwB_AAD_bind	PF10412.9	gi|336254947|ref|YP_004598054.1|	-	0.05	12.5	0.0	0.2	10.5	0.0	1.8	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_7	PF12775.7	gi|336254947|ref|YP_004598054.1|	-	0.071	12.6	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_2	PF07724.14	gi|336254947|ref|YP_004598054.1|	-	0.094	12.8	0.0	0.24	11.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_32	PF13654.6	gi|336254947|ref|YP_004598054.1|	-	0.095	11.5	0.1	7	5.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|336254947|ref|YP_004598054.1|	-	0.14	12.1	0.0	0.35	10.9	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_24	PF13479.6	gi|336254947|ref|YP_004598054.1|	-	0.15	11.7	0.1	0.32	10.7	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|336254947|ref|YP_004598054.1|	-	0.16	11.9	0.0	0.7	9.8	0.0	2.0	2	0	0	2	2	2	0	RsgA	GTPase
HNH_2	PF13391.6	gi|336254948|ref|YP_004598055.1|	-	4.4e-10	39.5	0.1	9.7e-10	38.4	0.1	1.6	1	0	0	1	1	1	1	HNH	endonuclease
AAA_assoc_C	PF09821.9	gi|336254948|ref|YP_004598055.1|	-	0.00098	19.6	0.0	0.082	13.4	0.0	2.5	2	0	0	2	2	2	1	C-terminal	AAA-associated	domain
HemN_C	PF06969.16	gi|336254948|ref|YP_004598055.1|	-	0.0016	18.5	0.4	0.011	15.8	0.1	2.3	2	0	0	2	2	2	1	HemN	C-terminal	domain
Mrr_N	PF14338.6	gi|336254948|ref|YP_004598055.1|	-	0.037	14.2	0.1	21	5.3	0.0	3.4	3	0	0	3	3	3	0	Mrr	N-terminal	domain
DUF4423	PF14394.6	gi|336254948|ref|YP_004598055.1|	-	0.075	12.7	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HNH	PF01844.23	gi|336254948|ref|YP_004598055.1|	-	0.085	13.0	0.2	0.16	12.2	0.2	1.4	1	0	0	1	1	1	0	HNH	endonuclease
HTH_45	PF14947.6	gi|336254948|ref|YP_004598055.1|	-	0.16	12.0	0.0	3.8	7.6	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix
FokI_C	PF02980.16	gi|336254948|ref|YP_004598055.1|	-	0.19	11.8	0.0	0.43	10.6	0.0	1.6	2	0	0	2	2	2	0	Restriction	endonuclease	FokI,	catalytic	domain
VRR_NUC	PF08774.11	gi|336254949|ref|YP_004598056.1|	-	0.17	11.9	0.0	0.48	10.5	0.0	1.7	2	0	0	2	2	2	0	VRR-NUC	domain
Cuticle_1	PF08140.11	gi|336254950|ref|YP_004598057.1|	-	0.11	12.5	0.0	7.8	6.6	0.0	2.3	2	0	0	2	2	2	0	Crustacean	cuticle	protein	repeat
DUF4225	PF13988.6	gi|336254951|ref|YP_004598058.1|	-	0.05	13.1	2.4	0.057	13.0	2.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
DUF393	PF04134.12	gi|336254952|ref|YP_004598059.1|	-	1.5e-10	42.4	0.1	1.8e-10	42.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
LMF1	PF06762.14	gi|336254954|ref|YP_004598061.1|	-	2.4e-126	422.4	15.3	4.5e-67	227.1	0.3	2.7	2	1	1	3	3	3	2	Lipase	maturation	factor
Nrap_D5	PF17406.2	gi|336254954|ref|YP_004598061.1|	-	0.01	15.6	0.3	0.018	14.8	0.3	1.3	1	0	0	1	1	1	0	Nrap	protein	PAP/OAS1-like	domain	5
HpcH_HpaI	PF03328.14	gi|336254955|ref|YP_004598062.1|	-	5.2e-28	97.7	0.0	6.9e-28	97.3	0.0	1.1	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
Sulfatase	PF00884.23	gi|336254958|ref|YP_004598065.1|	-	1.5e-44	152.6	0.0	1.9e-44	152.3	0.0	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336254958|ref|YP_004598065.1|	-	2.2e-17	63.7	3.5	5.2e-17	62.5	0.8	2.4	2	1	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF1501	PF07394.12	gi|336254958|ref|YP_004598065.1|	-	0.0015	17.7	0.0	0.0041	16.2	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1501)
Phosphoesterase	PF04185.14	gi|336254958|ref|YP_004598065.1|	-	0.032	13.4	0.2	0.17	11.1	0.1	1.9	2	0	0	2	2	2	0	Phosphoesterase	family
DUF4994	PF16385.5	gi|336254958|ref|YP_004598065.1|	-	0.061	13.3	0.0	0.2	11.6	0.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function
DUF229	PF02995.17	gi|336254958|ref|YP_004598065.1|	-	0.3	9.6	0.0	0.37	9.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
Sulfatase	PF00884.23	gi|336254959|ref|YP_004598066.1|	-	3.3e-47	161.4	0.0	4.3e-47	161.0	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336254959|ref|YP_004598066.1|	-	1.2e-08	34.9	0.3	0.0038	16.9	0.2	2.4	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF4976	PF16347.5	gi|336254959|ref|YP_004598066.1|	-	7.8e-07	29.3	1.1	0.025	14.8	0.4	2.4	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4976)
DUF1501	PF07394.12	gi|336254959|ref|YP_004598066.1|	-	0.0017	17.5	0.7	0.003	16.7	0.3	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1501)
Sulfatase_C	PF14707.6	gi|336254959|ref|YP_004598066.1|	-	0.015	16.0	0.0	0.037	14.7	0.0	1.6	1	0	0	1	1	1	0	C-terminal	region	of	aryl-sulfatase
DUF4994	PF16385.5	gi|336254959|ref|YP_004598066.1|	-	0.019	14.8	0.6	0.67	9.9	0.6	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function
DUF229	PF02995.17	gi|336254959|ref|YP_004598066.1|	-	0.23	10.0	0.0	0.32	9.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
IU_nuc_hydro	PF01156.19	gi|336254961|ref|YP_004598068.1|	-	1.4e-78	264.5	0.7	1.7e-78	264.3	0.7	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
CMD	PF02627.20	gi|336254962|ref|YP_004598069.1|	-	3.6e-13	49.4	0.2	5.1e-13	48.9	0.2	1.2	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
PseudoU_synth_1	PF01416.20	gi|336254963|ref|YP_004598070.1|	-	7.5e-15	55.3	0.0	4.4e-11	43.2	0.0	2.4	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
DUF4212	PF13937.6	gi|336254964|ref|YP_004598071.1|	-	0.068	13.6	0.3	0.068	13.6	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4212)
DUF4397	PF14344.6	gi|336254965|ref|YP_004598072.1|	-	1.7e-32	112.7	2.0	1.5e-18	67.7	0.3	3.5	3	0	0	3	3	3	3	Domain	of	unknown	function	(DUF4397)
TAT_signal	PF10518.9	gi|336254965|ref|YP_004598072.1|	-	0.037	13.9	0.3	0.067	13.1	0.3	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PadR	PF03551.14	gi|336254966|ref|YP_004598073.1|	-	2.1e-13	50.1	0.2	2.4e-13	49.8	0.2	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|336254966|ref|YP_004598073.1|	-	9.6e-05	22.8	0.0	0.00012	22.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|336254966|ref|YP_004598073.1|	-	0.00015	21.7	0.0	0.0019	18.1	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|336254966|ref|YP_004598073.1|	-	0.0045	16.8	0.0	0.0048	16.7	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.11	gi|336254966|ref|YP_004598073.1|	-	0.0047	16.7	0.0	0.007	16.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_34	PF13601.6	gi|336254966|ref|YP_004598073.1|	-	0.0086	16.2	0.0	0.012	15.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF505	PF04458.12	gi|336254966|ref|YP_004598073.1|	-	0.0086	14.5	0.0	0.0096	14.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
Replic_Relax	PF13814.6	gi|336254966|ref|YP_004598073.1|	-	0.012	15.6	0.1	0.015	15.4	0.1	1.1	1	0	0	1	1	1	0	Replication-relaxation
HxlR	PF01638.17	gi|336254966|ref|YP_004598073.1|	-	0.027	14.3	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Penicillinase_R	PF03965.16	gi|336254966|ref|YP_004598073.1|	-	0.071	13.5	0.0	0.071	13.5	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
NUDIX	PF00293.28	gi|336254967|ref|YP_004598074.1|	-	4.4e-11	43.0	0.5	6e-11	42.5	0.5	1.2	1	0	0	1	1	1	1	NUDIX	domain
Pentapeptide_4	PF13599.6	gi|336254968|ref|YP_004598075.1|	-	0.0042	17.2	0.2	0.024	14.8	0.0	2.3	2	1	0	2	2	2	1	Pentapeptide	repeats	(9	copies)
DUF5629	PF18629.1	gi|336254968|ref|YP_004598075.1|	-	0.39	11.3	4.8	3.8	8.1	0.1	3.0	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5629)
TGT	PF01702.18	gi|336254970|ref|YP_004598077.1|	-	3e-78	263.4	0.0	4.4e-78	262.9	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
TGT_C1	PF14809.6	gi|336254970|ref|YP_004598077.1|	-	0.0006	20.1	0.2	0.049	14.0	0.0	2.5	2	0	0	2	2	2	1	C1	domain	of	tRNA-guanine	transglycosylase	dimerisation
HalOD1	PF18545.1	gi|336254971|ref|YP_004598078.1|	-	1.7e-24	85.9	0.0	2.6e-24	85.3	0.0	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_24	PF13412.6	gi|336254972|ref|YP_004598079.1|	-	3.9e-14	51.9	0.1	1.6e-13	50.0	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336254972|ref|YP_004598079.1|	-	1e-13	50.9	3.2	1.5e-13	50.4	2.0	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336254972|ref|YP_004598079.1|	-	2.8e-07	30.5	0.1	1.3e-06	28.4	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336254972|ref|YP_004598079.1|	-	4.2e-06	26.6	0.0	7.9e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|336254972|ref|YP_004598079.1|	-	2.3e-05	24.2	0.1	0.00037	20.3	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_28	PF13518.6	gi|336254972|ref|YP_004598079.1|	-	4.6e-05	23.5	0.1	0.00011	22.3	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|336254972|ref|YP_004598079.1|	-	4.7e-05	22.8	0.3	0.00013	21.5	0.3	1.7	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336254972|ref|YP_004598079.1|	-	0.00031	21.2	0.2	0.0011	19.5	0.1	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|336254972|ref|YP_004598079.1|	-	0.0007	19.5	0.0	0.0038	17.2	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|336254972|ref|YP_004598079.1|	-	0.001	18.8	0.1	0.0019	18.0	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_10	PF04967.12	gi|336254972|ref|YP_004598079.1|	-	0.0026	17.5	0.1	0.0047	16.7	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|336254972|ref|YP_004598079.1|	-	0.0037	16.7	0.2	0.0081	15.6	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_DeoR	PF08220.12	gi|336254972|ref|YP_004598079.1|	-	0.0081	15.9	0.1	0.018	14.7	0.1	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_30	PF13556.6	gi|336254972|ref|YP_004598079.1|	-	0.0098	15.7	0.2	0.032	14.0	0.2	1.9	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR	PF01047.22	gi|336254972|ref|YP_004598079.1|	-	0.012	15.6	0.0	0.037	13.9	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Sigma70_r4_2	PF08281.12	gi|336254972|ref|YP_004598079.1|	-	0.012	15.3	0.1	0.031	14.0	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Rrf2	PF02082.20	gi|336254972|ref|YP_004598079.1|	-	0.018	15.4	0.0	0.062	13.7	0.0	1.8	2	0	0	2	2	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|336254972|ref|YP_004598079.1|	-	0.023	14.9	0.0	0.066	13.4	0.0	1.7	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.6	gi|336254972|ref|YP_004598079.1|	-	0.023	14.6	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TxDE	PF18711.1	gi|336254972|ref|YP_004598079.1|	-	0.03	14.4	0.0	5.5	7.2	0.0	2.3	2	0	0	2	2	2	0	Toxoflavin-degrading	enzyme
GntR	PF00392.21	gi|336254972|ref|YP_004598079.1|	-	0.033	13.8	1.9	0.057	13.1	0.1	2.2	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|336254972|ref|YP_004598079.1|	-	0.04	13.8	0.0	0.072	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PaaX	PF07848.12	gi|336254972|ref|YP_004598079.1|	-	0.05	13.8	0.1	0.9	9.8	0.1	2.2	2	0	0	2	2	2	0	PaaX-like	protein
TrmB	PF01978.19	gi|336254972|ref|YP_004598079.1|	-	0.05	13.5	0.0	0.13	12.1	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Nkap_C	PF06047.11	gi|336254972|ref|YP_004598079.1|	-	0.053	13.6	0.1	0.98	9.6	0.0	2.1	1	1	0	2	2	2	0	NF-kappa-B-activating	protein	C-terminal	domain
HTH_47	PF16221.5	gi|336254972|ref|YP_004598079.1|	-	0.074	12.6	0.1	1.3	8.6	0.0	2.2	2	0	0	2	2	2	0	winged	helix-turn-helix
LexA_DNA_bind	PF01726.16	gi|336254972|ref|YP_004598079.1|	-	0.098	12.4	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|336254972|ref|YP_004598079.1|	-	0.11	12.3	0.1	0.26	11.1	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Get5_C	PF18514.1	gi|336254972|ref|YP_004598079.1|	-	0.13	12.0	0.2	5	6.9	0.0	2.9	3	0	0	3	3	3	0	Get5	C-terminal	domain
DDRGK	PF09756.9	gi|336254972|ref|YP_004598079.1|	-	0.17	11.4	0.0	0.29	10.7	0.0	1.3	1	0	0	1	1	1	0	DDRGK	domain
HemY_N	PF07219.13	gi|336254973|ref|YP_004598080.1|	-	0.046	13.9	1.5	0.069	13.3	1.5	1.2	1	0	0	1	1	1	0	HemY	protein	N-terminus
NfeD	PF01957.18	gi|336254973|ref|YP_004598080.1|	-	0.092	13.1	2.6	0.82	10.1	2.6	2.1	1	1	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF5591	PF17884.1	gi|336254974|ref|YP_004598081.1|	-	2.6e-60	202.8	0.6	3.8e-60	202.2	0.6	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT_C2	PF14810.6	gi|336254974|ref|YP_004598081.1|	-	1.2e-22	79.8	0.0	3.7e-22	78.2	0.0	1.9	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
TGT	PF01702.18	gi|336254974|ref|YP_004598081.1|	-	1.8e-13	50.4	0.1	5e-13	48.9	0.1	1.8	2	1	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.20	gi|336254974|ref|YP_004598081.1|	-	2.6e-12	46.5	0.8	7.4e-12	45.1	0.6	1.8	2	0	0	2	2	2	1	PUA	domain
PRP21_like_P	PF12230.8	gi|336254975|ref|YP_004598082.1|	-	0.16	11.8	0.0	0.17	11.8	0.0	1.1	1	0	0	1	1	1	0	Pre-mRNA	splicing	factor	PRP21	like	protein
Fe_dep_repress	PF01325.19	gi|336254976|ref|YP_004598083.1|	-	2.8e-13	49.9	0.1	7.1e-13	48.6	0.0	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|336254976|ref|YP_004598083.1|	-	6.4e-07	29.2	0.0	1.4e-06	28.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Fe_dep_repr_C	PF02742.15	gi|336254976|ref|YP_004598083.1|	-	9.1e-05	22.5	0.2	0.00014	21.8	0.2	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_IclR	PF09339.10	gi|336254976|ref|YP_004598083.1|	-	0.0012	18.6	0.1	0.0028	17.4	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|336254976|ref|YP_004598083.1|	-	0.0026	17.6	0.0	0.0048	16.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_12	PF08461.10	gi|336254976|ref|YP_004598083.1|	-	0.012	15.6	0.6	0.2	11.6	0.1	2.5	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_27	PF13463.6	gi|336254976|ref|YP_004598083.1|	-	0.023	15.2	0.0	0.043	14.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|336254976|ref|YP_004598083.1|	-	0.033	14.1	0.2	0.16	11.9	0.0	2.3	2	2	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|336254976|ref|YP_004598083.1|	-	0.034	13.7	0.0	0.078	12.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|336254976|ref|YP_004598083.1|	-	0.047	13.7	0.0	1.1	9.3	0.0	2.2	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|336254976|ref|YP_004598083.1|	-	0.058	13.2	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Ferritin	PF00210.24	gi|336254977|ref|YP_004598084.1|	-	5.9e-34	117.0	8.5	7e-34	116.8	8.5	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
CorA	PF01544.18	gi|336254977|ref|YP_004598084.1|	-	0.088	12.1	2.6	0.1	11.9	2.0	1.3	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF1451	PF07295.11	gi|336254977|ref|YP_004598084.1|	-	0.094	12.7	7.4	0.096	12.7	1.3	2.5	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
Osmo_CC	PF08946.10	gi|336254977|ref|YP_004598084.1|	-	0.34	11.2	8.7	0.34	11.2	0.1	3.1	3	0	0	3	3	3	0	Osmosensory	transporter	coiled	coil
DUF308	PF03729.13	gi|336254978|ref|YP_004598085.1|	-	1.3e-17	63.9	36.6	4.9e-08	33.2	8.9	3.1	1	1	2	3	3	3	3	Short	repeat	of	unknown	function	(DUF308)
DUF4538	PF15061.6	gi|336254978|ref|YP_004598085.1|	-	0.14	11.9	8.5	1	9.2	0.2	3.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4538)
DUF2070	PF09843.9	gi|336254978|ref|YP_004598085.1|	-	7.5	4.7	8.6	1.7	6.8	5.5	1.4	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Bac_luciferase	PF00296.20	gi|336254979|ref|YP_004598086.1|	-	4.5e-40	138.0	5.5	6e-40	137.6	5.4	1.3	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
EF-1_beta_acid	PF10587.9	gi|336254979|ref|YP_004598086.1|	-	4.3	7.9	5.3	10	6.7	5.3	1.6	1	0	0	1	1	1	0	Eukaryotic	elongation	factor	1	beta	central	acidic	region
BAT	PF15915.5	gi|336254980|ref|YP_004598087.1|	-	6.1e-38	130.1	11.4	6.1e-38	130.1	11.4	2.7	3	0	0	3	3	3	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|336254980|ref|YP_004598087.1|	-	1.2e-21	77.5	0.9	2.9e-21	76.2	0.2	2.1	2	0	0	2	2	2	1	GAF	domain
HTH_10	PF04967.12	gi|336254980|ref|YP_004598087.1|	-	9.3e-21	73.4	0.0	2.4e-20	72.1	0.0	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Response_reg	PF00072.24	gi|336254980|ref|YP_004598087.1|	-	1.7e-17	63.6	0.2	3.7e-16	59.3	0.2	2.8	2	1	0	2	2	2	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|336254980|ref|YP_004598087.1|	-	6.8e-10	39.7	0.0	1.7e-09	38.4	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336254980|ref|YP_004598087.1|	-	2.4e-05	24.7	0.0	0.00012	22.5	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
Sigma70_r4_2	PF08281.12	gi|336254980|ref|YP_004598087.1|	-	0.001	18.7	0.1	0.024	14.3	0.0	3.0	2	1	0	2	2	2	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|336254980|ref|YP_004598087.1|	-	0.0066	16.0	0.0	0.015	14.8	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GerE	PF00196.19	gi|336254980|ref|YP_004598087.1|	-	0.076	12.6	0.0	0.16	11.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Response_reg	PF00072.24	gi|336254981|ref|YP_004598088.1|	-	3.4e-22	78.7	0.0	4e-22	78.5	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|336254982|ref|YP_004598089.1|	-	1.4e-72	240.9	30.2	2.5e-13	50.2	0.8	7.6	8	0	0	8	8	8	6	PAS	fold
PAS	PF00989.25	gi|336254982|ref|YP_004598089.1|	-	1.4e-58	195.8	0.6	5.5e-13	48.9	0.0	7.0	7	0	0	7	7	7	5	PAS	fold
PAS_9	PF13426.7	gi|336254982|ref|YP_004598089.1|	-	4.6e-49	165.0	0.0	2e-11	44.0	0.0	7.5	7	0	0	7	7	7	6	PAS	domain
PAS_8	PF13188.7	gi|336254982|ref|YP_004598089.1|	-	6.6e-34	115.4	7.4	8.7e-10	38.4	0.0	7.0	6	0	0	6	6	6	5	PAS	domain
HATPase_c	PF02518.26	gi|336254982|ref|YP_004598089.1|	-	5.4e-27	94.5	0.1	6.5e-26	91.0	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336254982|ref|YP_004598089.1|	-	2.5e-21	75.8	1.4	0.00041	20.6	0.0	6.6	7	0	0	7	7	6	5	PAS	fold
PAS_7	PF12860.7	gi|336254982|ref|YP_004598089.1|	-	1.8e-19	70.0	6.1	3.2e-06	27.3	0.0	8.9	7	2	0	7	7	7	3	PAS	fold
GAF_3	PF13492.6	gi|336254982|ref|YP_004598089.1|	-	3.8e-17	62.8	0.0	1.5e-06	28.6	0.1	3.9	4	0	0	4	4	3	2	GAF	domain
GAF_2	PF13185.6	gi|336254982|ref|YP_004598089.1|	-	5.3e-12	46.2	10.6	3.2e-09	37.2	1.2	4.9	4	1	0	4	4	4	2	GAF	domain
GAF	PF01590.26	gi|336254982|ref|YP_004598089.1|	-	1.5e-10	41.8	0.5	7.8e-05	23.3	0.2	3.4	3	0	0	3	3	3	2	GAF	domain
HisKA	PF00512.25	gi|336254982|ref|YP_004598089.1|	-	8.7e-10	38.5	0.1	8.7e-10	38.5	0.1	4.0	3	1	1	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
sCache_like	PF16736.5	gi|336254982|ref|YP_004598089.1|	-	0.00031	20.8	0.6	1.4	9.0	0.0	3.5	4	0	0	4	4	4	2	Single	Cache-like
HATPase_c_5	PF14501.6	gi|336254982|ref|YP_004598089.1|	-	0.00059	19.7	0.0	0.0014	18.5	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|336254982|ref|YP_004598089.1|	-	0.015	15.2	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GCN5L1	PF06320.13	gi|336254982|ref|YP_004598089.1|	-	0.076	13.2	0.2	0.47	10.6	0.1	2.4	2	0	0	2	2	1	0	GCN5-like	protein	1	(GCN5L1)
Peripla_BP_6	PF13458.6	gi|336254983|ref|YP_004598090.1|	-	9.6e-29	101.1	10.5	1.2e-28	100.7	10.5	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|336254983|ref|YP_004598090.1|	-	4.1e-19	68.9	0.0	5.4e-19	68.5	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
MCPsignal	PF00015.21	gi|336254984|ref|YP_004598091.1|	-	1.4e-37	129.2	25.2	1.4e-37	129.2	25.2	4.7	1	1	3	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|336254984|ref|YP_004598091.1|	-	2.1e-13	50.4	1.6	2.1e-13	50.4	1.6	5.2	6	0	0	6	6	5	2	HAMP	domain
dCache_1	PF02743.18	gi|336254984|ref|YP_004598091.1|	-	4.5e-09	36.5	0.3	4.5e-09	36.5	0.3	3.9	3	2	0	3	3	2	1	Cache	domain
DUF948	PF06103.11	gi|336254984|ref|YP_004598091.1|	-	2.7e-06	27.5	53.3	0.00018	21.7	3.4	7.4	4	3	3	7	7	7	3	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|336254984|ref|YP_004598091.1|	-	0.082	12.9	49.4	0.98	9.4	8.0	5.7	2	2	3	5	5	5	0	Laminin	Domain	II
DUF3584	PF12128.8	gi|336254984|ref|YP_004598091.1|	-	0.11	9.9	56.2	0.21	9.0	30.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Retrotrans_gag	PF03732.17	gi|336254984|ref|YP_004598091.1|	-	0.17	12.2	1.2	6.4	7.1	0.1	3.5	3	0	0	3	3	2	0	Retrotransposon	gag	protein
Fez1	PF06818.15	gi|336254984|ref|YP_004598091.1|	-	0.21	12.0	45.9	0.41	11.1	10.4	3.6	2	1	1	3	3	3	0	Fez1
DUF1664	PF07889.12	gi|336254984|ref|YP_004598091.1|	-	0.22	11.6	39.5	0.071	13.2	2.9	6.5	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|336254984|ref|YP_004598091.1|	-	0.47	10.8	34.2	0.081	13.2	4.0	6.0	3	2	1	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
MbeD_MobD	PF04899.12	gi|336254984|ref|YP_004598091.1|	-	0.77	9.9	5.2	13	5.9	0.3	3.3	2	0	0	2	2	2	0	MbeD/MobD	like
Syntaxin_2	PF14523.6	gi|336254984|ref|YP_004598091.1|	-	0.92	9.9	12.7	16	6.0	2.1	5.0	2	1	3	5	5	5	0	Syntaxin-like	protein
MAD	PF05557.13	gi|336254984|ref|YP_004598091.1|	-	1.7	6.9	43.1	0.047	12.1	10.7	2.4	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
DUF1759	PF03564.15	gi|336254984|ref|YP_004598091.1|	-	3.1	7.7	13.8	5.2	7.0	0.6	4.8	2	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1759)
DUF2203	PF09969.9	gi|336254984|ref|YP_004598091.1|	-	3.5	8.4	45.7	0.26	12.0	2.0	5.8	4	2	2	6	6	5	0	Uncharacterized	conserved	protein	(DUF2203)
Baculo_PEP_C	PF04513.12	gi|336254984|ref|YP_004598091.1|	-	3.5	7.6	28.3	0.085	12.9	4.9	4.9	3	2	1	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
STAT_alpha	PF01017.20	gi|336254984|ref|YP_004598091.1|	-	5.6	6.8	12.1	3.4	7.6	4.1	3.8	1	1	2	3	3	3	0	STAT	protein,	all-alpha	domain
NPV_P10	PF05531.12	gi|336254984|ref|YP_004598091.1|	-	7.4	7.1	25.4	13	6.3	4.0	5.8	3	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Mce4_CUP1	PF11887.8	gi|336254984|ref|YP_004598091.1|	-	7.6	5.9	14.1	0.44	9.9	2.9	3.0	2	1	0	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
AIP3	PF03915.13	gi|336254984|ref|YP_004598091.1|	-	8	5.4	37.5	1.8	7.6	8.0	3.3	1	1	2	3	3	3	0	Actin	interacting	protein	3
LMBR1	PF04791.16	gi|336254984|ref|YP_004598091.1|	-	9.5	5.0	21.6	0.092	11.6	7.4	2.4	1	1	1	2	2	2	0	LMBR1-like	membrane	protein
DHR10	PF18595.1	gi|336254985|ref|YP_004598092.1|	-	0.014	15.4	0.7	0.014	15.4	0.7	1.8	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
GPW_gp25	PF04965.14	gi|336254985|ref|YP_004598092.1|	-	0.032	14.0	0.5	4.5	7.1	0.0	2.4	1	1	1	2	2	2	0	Gene	25-like	lysozyme
FUSC	PF04632.12	gi|336254985|ref|YP_004598092.1|	-	1.5	7.3	3.8	1.8	7.0	3.8	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Putative_PNPOx	PF01243.20	gi|336254986|ref|YP_004598093.1|	-	2.1e-17	63.1	0.0	2.6e-17	62.8	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|336254986|ref|YP_004598093.1|	-	2.8e-06	27.4	0.0	3.8e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|336254986|ref|YP_004598093.1|	-	4.4e-05	23.1	0.0	4.8e-05	23.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Aldolase	PF01081.19	gi|336254987|ref|YP_004598094.1|	-	1.5e-44	151.8	2.0	1.8e-44	151.5	2.0	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
PEP_hydrolase	PF09370.10	gi|336254987|ref|YP_004598094.1|	-	0.01	15.1	0.8	0.056	12.6	0.1	2.1	1	1	1	2	2	2	0	Phosphoenolpyruvate	hydrolase-like
Ribul_P_3_epim	PF00834.19	gi|336254987|ref|YP_004598094.1|	-	5.8	6.2	6.5	2.8	7.3	0.4	3.0	1	1	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
PfkB	PF00294.24	gi|336254988|ref|YP_004598095.1|	-	1.5e-51	175.5	0.2	1.8e-51	175.2	0.2	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
MR_MLE_C	PF13378.6	gi|336254989|ref|YP_004598096.1|	-	2.9e-66	223.2	0.3	3.9e-66	222.8	0.3	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336254989|ref|YP_004598096.1|	-	1e-25	90.2	0.0	1.9e-25	89.4	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Glyco_hydro_4C	PF11975.8	gi|336254990|ref|YP_004598097.1|	-	1.1e-65	221.6	0.0	2.3e-65	220.6	0.0	1.5	2	0	0	2	2	2	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Glyco_hydro_4	PF02056.16	gi|336254990|ref|YP_004598097.1|	-	1.3e-63	213.8	0.0	2.2e-63	213.1	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Ldh_1_N	PF00056.23	gi|336254990|ref|YP_004598097.1|	-	0.051	13.7	0.1	6.8	6.8	0.0	2.6	3	0	0	3	3	3	0	lactate/malate	dehydrogenase,	NAD	binding	domain
OTCace	PF00185.24	gi|336254990|ref|YP_004598097.1|	-	0.16	12.1	0.0	0.36	10.9	0.0	1.5	1	0	0	1	1	1	0	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Methyltrn_RNA_2	PF04013.12	gi|336254992|ref|YP_004598099.1|	-	1.6e-54	184.6	0.0	1.8e-54	184.5	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
YdjM	PF04307.14	gi|336254993|ref|YP_004598100.1|	-	4.8e-13	48.8	4.1	5.6e-13	48.6	4.1	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Prok-RING_1	PF14446.6	gi|336254994|ref|YP_004598101.1|	-	1.6e-07	31.1	0.9	2.4e-07	30.6	0.9	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.6	gi|336254994|ref|YP_004598101.1|	-	5.5e-05	22.4	2.4	0.092	12.2	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336254994|ref|YP_004598101.1|	-	0.002	18.2	9.0	0.065	13.4	3.8	2.1	1	1	1	2	2	2	2	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336254994|ref|YP_004598101.1|	-	0.0025	17.5	2.2	0.4	10.5	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|336254994|ref|YP_004598101.1|	-	0.004	17.5	1.0	0.0055	17.0	1.0	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.12	gi|336254994|ref|YP_004598101.1|	-	0.004	16.6	2.8	0.0057	16.1	2.8	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|336254994|ref|YP_004598101.1|	-	0.0051	16.8	1.4	0.038	14.0	1.7	1.7	1	1	1	2	2	2	2	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|336254994|ref|YP_004598101.1|	-	0.0078	16.1	2.6	0.044	13.7	2.6	2.0	1	1	1	2	2	2	1	Nudix	N-terminal
A2L_zn_ribbon	PF08792.10	gi|336254994|ref|YP_004598101.1|	-	0.011	15.4	1.6	0.041	13.6	1.6	1.8	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336254994|ref|YP_004598101.1|	-	0.013	15.5	2.2	0.066	13.2	2.2	1.9	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
OrfB_Zn_ribbon	PF07282.11	gi|336254994|ref|YP_004598101.1|	-	0.013	15.4	0.2	0.018	14.9	0.2	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|336254994|ref|YP_004598101.1|	-	0.026	14.6	3.3	0.86	9.7	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf_Rg	PF17915.1	gi|336254994|ref|YP_004598101.1|	-	0.028	13.8	1.6	0.04	13.3	1.6	1.4	1	1	0	1	1	1	0	Reverse	gyrase	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|336254994|ref|YP_004598101.1|	-	0.031	14.3	0.5	0.031	14.3	0.5	2.7	2	1	1	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|336254994|ref|YP_004598101.1|	-	0.041	13.9	1.9	0.11	12.5	1.6	1.7	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|336254994|ref|YP_004598101.1|	-	0.052	13.8	0.5	4	7.8	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon
zf-IS66	PF13005.7	gi|336254994|ref|YP_004598101.1|	-	0.058	13.8	1.9	0.98	9.9	0.2	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
HypA	PF01155.19	gi|336254994|ref|YP_004598101.1|	-	0.061	13.3	0.3	0.067	13.2	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Auto_anti-p27	PF06677.12	gi|336254994|ref|YP_004598101.1|	-	0.07	13.3	1.7	0.16	12.1	1.4	1.7	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-NADH-PPase	PF09297.11	gi|336254994|ref|YP_004598101.1|	-	0.072	12.8	3.1	3.4	7.4	0.3	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|336254994|ref|YP_004598101.1|	-	0.12	12.2	2.1	0.23	11.3	0.1	2.0	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
FlhC	PF05280.11	gi|336254994|ref|YP_004598101.1|	-	0.2	11.4	0.1	0.24	11.1	0.1	1.1	1	0	0	1	1	1	0	Flagellar	transcriptional	activator	(FlhC)
DUF1272	PF06906.11	gi|336254994|ref|YP_004598101.1|	-	0.27	11.3	0.3	0.27	11.3	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DUF2752	PF10825.8	gi|336254994|ref|YP_004598101.1|	-	0.39	10.8	1.8	3.7	7.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2752)
zf-tcix	PF14952.6	gi|336254994|ref|YP_004598101.1|	-	0.83	9.3	4.8	4.2	7.1	0.4	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
YhfH	PF14149.6	gi|336254994|ref|YP_004598101.1|	-	3.1	7.9	5.9	9.1	6.4	0.5	2.2	1	1	1	2	2	2	0	YhfH-like	protein
PsbL	PF02419.17	gi|336254995|ref|YP_004598102.1|	-	0.14	12.2	2.2	0.3	11.1	2.2	1.5	1	0	0	1	1	1	0	PsbL	protein
Trypsin_2	PF13365.6	gi|336254997|ref|YP_004598104.1|	-	1.5e-28	100.6	2.7	2.3e-28	100.0	2.7	1.3	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|336254997|ref|YP_004598104.1|	-	1.7e-13	50.9	0.2	1.3e-12	48.0	0.2	1.9	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.6	gi|336254997|ref|YP_004598104.1|	-	1.3e-08	35.0	0.0	2.6e-08	34.0	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain
PDZ	PF00595.24	gi|336254997|ref|YP_004598104.1|	-	0.00012	22.4	0.0	0.042	14.2	0.0	2.6	2	0	0	2	2	2	2	PDZ	domain
PDZ_6	PF17820.1	gi|336254997|ref|YP_004598104.1|	-	0.0011	18.7	0.1	0.2	11.5	0.0	2.9	2	0	0	2	2	2	1	PDZ	domain
Peptidase_S32	PF05579.13	gi|336254997|ref|YP_004598104.1|	-	0.027	13.7	0.8	0.91	8.6	0.2	2.1	2	0	0	2	2	2	0	Equine	arteritis	virus	serine	endopeptidase	S32
Tricorn_PDZ	PF14685.6	gi|336254997|ref|YP_004598104.1|	-	0.088	12.8	0.0	0.63	10.0	0.0	2.3	2	0	0	2	2	2	0	Tricorn	protease	PDZ	domain
THUMP	PF02926.17	gi|336254998|ref|YP_004598105.1|	-	1e-08	35.4	0.0	5.5e-08	33.0	0.0	2.0	2	0	0	2	2	2	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.19	gi|336254998|ref|YP_004598105.1|	-	0.0016	18.7	2.1	0.0016	18.7	2.1	2.5	3	0	0	3	3	3	1	DnaJ	central	domain
SpaA	PF17802.1	gi|336254998|ref|YP_004598105.1|	-	0.091	13.1	0.0	0.56	10.6	0.0	2.3	1	1	0	1	1	1	0	Prealbumin-like	fold	domain
Anti-TRAP	PF15777.5	gi|336254998|ref|YP_004598105.1|	-	0.48	10.4	7.2	0.082	12.9	1.9	2.4	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Peptidase_S9	PF00326.21	gi|336254999|ref|YP_004598106.1|	-	9.1e-48	162.5	0.0	1.3e-47	162.0	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|336254999|ref|YP_004598106.1|	-	1e-09	38.4	0.3	1e-05	25.3	0.5	2.3	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|336254999|ref|YP_004598106.1|	-	9.5e-09	35.1	0.0	1.7e-08	34.3	0.0	1.3	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|336254999|ref|YP_004598106.1|	-	2.4e-08	33.5	0.2	0.00027	20.3	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|336254999|ref|YP_004598106.1|	-	0.00012	21.8	0.4	0.45	10.1	0.0	2.3	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
FSH1	PF03959.13	gi|336254999|ref|YP_004598106.1|	-	0.00062	19.5	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Peptidase_S9_N	PF02897.15	gi|336254999|ref|YP_004598106.1|	-	0.0022	16.9	0.0	0.028	13.2	0.0	2.1	2	0	0	2	2	2	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
Gmad1	PF10647.9	gi|336254999|ref|YP_004598106.1|	-	0.0023	17.7	10.3	0.45	10.2	1.4	4.2	3	2	0	3	3	3	2	Lipoprotein	LpqB	beta-propeller	domain
Esterase_phd	PF10503.9	gi|336254999|ref|YP_004598106.1|	-	0.0055	16.2	0.0	0.012	15.1	0.0	1.5	1	0	0	1	1	1	1	Esterase	PHB	depolymerase
ANAPC4_WD40	PF12894.7	gi|336254999|ref|YP_004598106.1|	-	0.15	12.3	0.0	28	5.1	0.0	3.8	4	1	0	4	4	4	0	Anaphase-promoting	complex	subunit	4	WD40	domain
AF-4	PF05110.13	gi|336254999|ref|YP_004598106.1|	-	8.3	4.3	14.1	11	3.9	14.1	1.1	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
RNase_HII	PF01351.18	gi|336255000|ref|YP_004598107.1|	-	2e-35	122.4	0.0	5.3e-35	121.1	0.0	1.6	1	1	0	1	1	1	1	Ribonuclease	HII
SecD_SecF	PF02355.16	gi|336255001|ref|YP_004598108.1|	-	3e-13	49.6	3.3	3e-13	49.6	3.3	1.7	2	0	0	2	2	2	1	Protein	export	membrane	protein
MMPL	PF03176.15	gi|336255001|ref|YP_004598108.1|	-	0.0055	15.7	11.2	0.012	14.6	11.2	1.4	1	0	0	1	1	1	1	MMPL	family
Sterol-sensing	PF12349.8	gi|336255001|ref|YP_004598108.1|	-	0.01	15.7	1.4	0.018	14.8	1.4	1.3	1	0	0	1	1	1	0	Sterol-sensing	domain	of	SREBP	cleavage-activation
SecD_SecF	PF02355.16	gi|336255002|ref|YP_004598109.1|	-	4.9e-29	101.1	12.3	7.7e-29	100.4	12.3	1.3	1	0	0	1	1	1	1	Protein	export	membrane	protein
Sec_GG	PF07549.14	gi|336255002|ref|YP_004598109.1|	-	0.00022	20.6	0.0	0.00066	19.1	0.0	1.9	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
ACR_tran	PF00873.19	gi|336255002|ref|YP_004598109.1|	-	0.0027	15.5	7.7	0.0034	15.1	7.7	1.2	1	0	0	1	1	1	1	AcrB/AcrD/AcrF	family
Patched	PF02460.18	gi|336255002|ref|YP_004598109.1|	-	0.2	9.7	12.4	0.42	8.6	12.4	1.5	1	1	0	1	1	1	0	Patched	family
PGI	PF00342.19	gi|336255005|ref|YP_004598112.1|	-	3.4e-29	101.8	0.0	5.2e-25	88.0	0.0	2.1	2	0	0	2	2	2	2	Phosphoglucose	isomerase
CPBP	PF02517.16	gi|336255006|ref|YP_004598113.1|	-	8.9e-14	51.6	1.4	8.9e-14	51.6	1.4	3.0	3	1	0	3	3	3	1	CPBP	intramembrane	metalloprotease
PIN_6	PF17146.4	gi|336255007|ref|YP_004598114.1|	-	2.1e-13	50.6	0.1	6e-13	49.1	0.1	1.6	2	0	0	2	2	2	1	PIN	domain	of	ribonuclease
PIN_5	PF08745.11	gi|336255007|ref|YP_004598114.1|	-	0.0021	17.5	0.8	0.0034	16.8	0.4	1.6	1	1	1	2	2	2	1	PINc	domain	ribonuclease
Zn-ribbon_8	PF09723.10	gi|336255007|ref|YP_004598114.1|	-	0.0022	18.1	3.0	0.006	16.7	3.0	1.7	1	0	0	1	1	1	1	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|336255007|ref|YP_004598114.1|	-	0.0027	17.7	1.5	0.037	14.0	0.2	2.5	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HypA	PF01155.19	gi|336255007|ref|YP_004598114.1|	-	0.0051	16.8	1.9	0.0072	16.3	1.9	1.5	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C3HC4_3	PF13920.6	gi|336255007|ref|YP_004598114.1|	-	0.0054	16.6	1.3	0.008	16.0	1.3	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
DUF4411	PF14367.6	gi|336255007|ref|YP_004598114.1|	-	0.0076	16.2	0.1	0.071	13.0	0.0	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4411)
zinc-ribbons_6	PF07191.12	gi|336255007|ref|YP_004598114.1|	-	0.0077	16.2	0.7	0.012	15.5	0.7	1.3	1	0	0	1	1	1	1	zinc-ribbons
Prok-RING_4	PF14447.6	gi|336255007|ref|YP_004598114.1|	-	0.0093	15.8	0.5	0.036	13.9	1.1	1.6	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
zf-C3HC4_2	PF13923.6	gi|336255007|ref|YP_004598114.1|	-	0.012	15.4	2.2	0.021	14.6	2.2	1.4	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.7	gi|336255007|ref|YP_004598114.1|	-	0.013	15.5	0.3	0.02	14.9	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF3663	PF12404.8	gi|336255007|ref|YP_004598114.1|	-	0.017	15.1	0.0	0.047	13.7	0.0	1.8	1	0	0	1	1	1	0	Peptidase
Rad50_zn_hook	PF04423.14	gi|336255007|ref|YP_004598114.1|	-	0.021	14.7	2.0	0.27	11.1	1.1	2.4	1	1	1	2	2	2	0	Rad50	zinc	hook	motif
zinc_ribbon_15	PF17032.5	gi|336255007|ref|YP_004598114.1|	-	0.024	15.4	0.1	0.035	14.9	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
zf-RING_5	PF14634.6	gi|336255007|ref|YP_004598114.1|	-	0.04	13.9	0.6	0.06	13.3	0.6	1.3	1	0	0	1	1	1	0	zinc-RING	finger	domain
DUF2710	PF10921.8	gi|336255007|ref|YP_004598114.1|	-	0.047	14.1	0.5	0.18	12.3	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2710)
C1_2	PF03107.16	gi|336255007|ref|YP_004598114.1|	-	0.048	14.0	0.1	0.093	13.1	0.1	1.5	1	0	0	1	1	1	0	C1	domain
NOB1_Zn_bind	PF08772.11	gi|336255007|ref|YP_004598114.1|	-	0.054	13.6	0.4	0.11	12.7	0.4	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Ribosomal_L37e	PF01907.19	gi|336255007|ref|YP_004598114.1|	-	0.057	13.6	0.6	0.092	12.9	0.6	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L37e
Prok-RING_1	PF14446.6	gi|336255007|ref|YP_004598114.1|	-	0.11	12.4	3.2	0.24	11.3	3.2	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Zn_ribbon_SprT	PF17283.2	gi|336255007|ref|YP_004598114.1|	-	0.21	11.5	3.8	3.1	7.8	3.8	2.2	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-C2HC_2	PF13913.6	gi|336255007|ref|YP_004598114.1|	-	0.31	11.0	0.4	0.31	11.0	0.4	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
PRC	PF05239.16	gi|336255008|ref|YP_004598115.1|	-	6.3e-11	42.2	0.1	7.6e-11	42.0	0.1	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
RalF_SCD	PF18248.1	gi|336255008|ref|YP_004598115.1|	-	0.19	11.7	0.0	0.24	11.4	0.0	1.1	1	0	0	1	1	1	0	RalF	C-terminal	Sec-7	capping	domain
GTP_EFTU	PF00009.27	gi|336255009|ref|YP_004598116.1|	-	4.2e-31	108.0	0.0	3.9e-30	104.9	0.0	2.4	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.6	gi|336255009|ref|YP_004598116.1|	-	5.7e-25	87.0	2.6	1.3e-24	85.9	0.1	2.7	3	0	0	3	3	3	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.8	gi|336255009|ref|YP_004598116.1|	-	3.2e-23	81.8	1.2	9.1e-23	80.4	0.5	2.2	2	0	0	2	2	2	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|336255009|ref|YP_004598116.1|	-	6.6e-14	52.1	8.0	7.8e-10	39.0	0.1	3.1	3	0	0	3	3	3	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|336255009|ref|YP_004598116.1|	-	2e-08	34.3	0.0	7.3e-08	32.5	0.0	2.0	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.23	gi|336255009|ref|YP_004598116.1|	-	0.0018	18.3	0.1	0.22	11.5	0.0	2.6	2	0	0	2	2	2	1	Dynamin	family
ATP_bind_1	PF03029.17	gi|336255009|ref|YP_004598116.1|	-	0.009	15.8	0.0	0.034	13.9	0.0	2.0	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Roc	PF08477.13	gi|336255009|ref|YP_004598116.1|	-	0.09	13.0	0.0	0.39	10.9	0.0	2.1	2	1	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Delta_lysin	PF05372.11	gi|336255009|ref|YP_004598116.1|	-	0.25	10.7	0.9	0.91	8.9	0.9	2.0	1	0	0	1	1	1	0	Delta	lysin	family
DUF4133	PF13571.6	gi|336255010|ref|YP_004598117.1|	-	0.037	14.4	1.5	0.045	14.1	1.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4133)
SPC12	PF06645.13	gi|336255010|ref|YP_004598117.1|	-	0.068	13.3	0.6	0.088	12.9	0.6	1.2	1	0	0	1	1	1	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
DUF4191	PF13829.6	gi|336255010|ref|YP_004598117.1|	-	0.61	9.4	2.3	0.63	9.3	2.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Cyclophil_like	PF04126.13	gi|336255011|ref|YP_004598118.1|	-	5.4e-27	94.0	0.0	5.8e-27	93.9	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin-like
Cyclophil_like2	PF18050.1	gi|336255011|ref|YP_004598118.1|	-	0.012	15.6	0.0	0.017	15.1	0.0	1.2	1	0	0	1	1	1	0	Cyclophilin-like	family
DUF3830	PF12903.7	gi|336255011|ref|YP_004598118.1|	-	0.079	12.7	0.1	0.11	12.1	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3830)
bPH_6	PF10756.9	gi|336255012|ref|YP_004598119.1|	-	0.002	18.2	0.3	0.0063	16.6	0.3	1.9	1	0	0	1	1	1	1	Bacterial	PH	domain
CTP_synth_N	PF06418.14	gi|336255014|ref|YP_004598121.1|	-	1.4e-125	417.9	0.2	1.8e-125	417.6	0.2	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|336255014|ref|YP_004598121.1|	-	3.2e-54	183.6	0.0	5.5e-54	182.8	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|336255014|ref|YP_004598121.1|	-	3.3e-07	30.3	0.0	7.8e-06	25.8	0.0	2.3	1	1	0	1	1	1	1	Peptidase	C26
CbiA	PF01656.23	gi|336255014|ref|YP_004598121.1|	-	0.0019	18.2	0.0	0.0032	17.5	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase_3	PF07685.14	gi|336255014|ref|YP_004598121.1|	-	0.067	12.8	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
GMP_synt_C	PF00958.22	gi|336255015|ref|YP_004598122.1|	-	7.8e-29	99.6	0.4	5.8e-28	96.8	0.2	2.1	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|336255015|ref|YP_004598122.1|	-	1.5e-08	34.1	0.0	3.8e-05	22.9	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|336255015|ref|YP_004598122.1|	-	3e-05	23.0	0.0	0.0017	17.2	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
PAPS_reduct	PF01507.19	gi|336255015|ref|YP_004598122.1|	-	0.0036	17.4	0.0	0.0066	16.5	0.0	1.5	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
QueC	PF06508.13	gi|336255015|ref|YP_004598122.1|	-	0.011	15.3	0.0	0.034	13.7	0.0	1.8	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|336255015|ref|YP_004598122.1|	-	0.021	14.4	0.0	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.21	gi|336255015|ref|YP_004598122.1|	-	0.029	14.1	0.0	0.051	13.2	0.0	1.5	1	0	0	1	1	1	0	Asparagine	synthase
5-FTHF_cyc-lig	PF01812.20	gi|336255017|ref|YP_004598124.1|	-	2.2e-29	102.7	0.0	2.6e-29	102.4	0.0	1.1	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
MoCF_biosynth	PF00994.24	gi|336255018|ref|YP_004598125.1|	-	4.7e-22	78.2	0.3	6.5e-22	77.7	0.3	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
ADH_zinc_N	PF00107.26	gi|336255019|ref|YP_004598126.1|	-	1.5e-34	118.7	0.0	3e-34	117.8	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|336255019|ref|YP_004598126.1|	-	1.2e-26	92.7	0.1	2.1e-26	91.9	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|336255019|ref|YP_004598126.1|	-	4.3e-21	76.4	0.0	7.1e-21	75.7	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|336255019|ref|YP_004598126.1|	-	0.0084	15.4	0.3	0.0084	15.4	0.3	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Semialdhyde_dh	PF01118.24	gi|336255019|ref|YP_004598126.1|	-	0.0087	16.5	0.1	0.017	15.5	0.1	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.25	gi|336255019|ref|YP_004598126.1|	-	0.021	14.3	0.3	0.037	13.5	0.3	1.5	1	1	0	1	1	1	0	short	chain	dehydrogenase
NADH_4Fe-4S	PF10589.9	gi|336255019|ref|YP_004598126.1|	-	0.2	11.7	0.5	0.38	10.9	0.5	1.4	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
NUDIX	PF00293.28	gi|336255021|ref|YP_004598128.1|	-	3.8e-16	59.3	0.7	5.1e-16	58.9	0.7	1.2	1	0	0	1	1	1	1	NUDIX	domain
DAGK_cat	PF00781.24	gi|336255022|ref|YP_004598129.1|	-	1.9e-22	79.2	0.7	4.5e-22	78.0	0.6	1.7	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
PHP_C	PF13263.6	gi|336255023|ref|YP_004598130.1|	-	7.3e-18	64.1	0.4	2.3e-17	62.5	0.0	2.1	2	0	0	2	2	2	1	PHP-associated
RraA-like	PF03737.15	gi|336255023|ref|YP_004598130.1|	-	0.088	13.0	0.0	3	8.0	0.0	2.4	2	1	1	3	3	3	0	Aldolase/RraA
HTH_AsnC-type	PF13404.6	gi|336255024|ref|YP_004598131.1|	-	1.3e-19	69.7	2.1	1.2e-17	63.4	1.1	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336255024|ref|YP_004598131.1|	-	7.9e-16	57.4	0.1	5.8e-15	54.6	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|336255024|ref|YP_004598131.1|	-	4.9e-11	42.4	0.6	4.9e-11	42.4	0.6	1.6	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
Sigma70_r4_2	PF08281.12	gi|336255024|ref|YP_004598131.1|	-	4.1e-05	23.2	0.0	0.00011	21.8	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|336255024|ref|YP_004598131.1|	-	0.00027	20.4	0.0	0.00051	19.5	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_20	PF12840.7	gi|336255024|ref|YP_004598131.1|	-	0.0004	20.4	0.0	0.00073	19.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255024|ref|YP_004598131.1|	-	0.0043	17.0	0.1	0.011	15.6	0.0	1.7	1	1	0	1	1	1	1	HTH	domain
NapD	PF03927.13	gi|336255024|ref|YP_004598131.1|	-	0.0044	17.0	0.5	0.0098	15.9	0.5	1.5	1	0	0	1	1	1	1	NapD	protein
HTH_IclR	PF09339.10	gi|336255024|ref|YP_004598131.1|	-	0.0051	16.6	0.0	0.0081	15.9	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|336255024|ref|YP_004598131.1|	-	0.0054	16.1	0.1	0.012	15.0	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
GerE	PF00196.19	gi|336255024|ref|YP_004598131.1|	-	0.0066	16.0	0.0	0.026	14.1	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
MarR_2	PF12802.7	gi|336255024|ref|YP_004598131.1|	-	0.0067	16.3	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|336255024|ref|YP_004598131.1|	-	0.015	15.1	0.1	0.026	14.3	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_38	PF13936.6	gi|336255024|ref|YP_004598131.1|	-	0.022	14.5	0.1	0.033	14.0	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|336255024|ref|YP_004598131.1|	-	0.022	14.4	0.0	0.048	13.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_DeoR	PF08220.12	gi|336255024|ref|YP_004598131.1|	-	0.023	14.4	0.2	0.12	12.1	0.1	2.1	1	1	1	2	2	2	0	DeoR-like	helix-turn-helix	domain
GYD	PF08734.11	gi|336255024|ref|YP_004598131.1|	-	0.025	14.5	1.1	0.093	12.7	0.3	2.1	1	1	0	2	2	2	0	GYD	domain
MarR	PF01047.22	gi|336255024|ref|YP_004598131.1|	-	0.027	14.4	0.0	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF746	PF05344.11	gi|336255024|ref|YP_004598131.1|	-	0.054	13.3	0.1	0.37	10.6	0.0	2.1	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
HTH_Mga	PF08280.11	gi|336255024|ref|YP_004598131.1|	-	0.084	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
CPSase_sm_chain	PF00988.22	gi|336255025|ref|YP_004598132.1|	-	8.3e-36	122.6	0.1	1.6e-34	118.5	0.0	2.4	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|336255025|ref|YP_004598132.1|	-	9.9e-36	123.3	0.0	1.8e-35	122.4	0.0	1.4	2	0	0	2	2	2	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|336255025|ref|YP_004598132.1|	-	1.3e-06	28.3	0.2	0.0024	17.7	0.0	2.2	1	1	1	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|336255025|ref|YP_004598132.1|	-	5.5e-06	26.3	0.1	9.2e-06	25.6	0.1	1.5	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF5518	PF17647.1	gi|336255026|ref|YP_004598133.1|	-	7.4e-22	77.7	13.8	8.5e-22	77.5	13.8	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Pyr_redox_2	PF07992.14	gi|336255027|ref|YP_004598134.1|	-	6.1e-07	29.0	0.5	2.6e-05	23.6	0.1	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|336255027|ref|YP_004598134.1|	-	8.5e-06	25.2	2.2	0.00079	18.8	0.2	2.5	2	1	1	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336255027|ref|YP_004598134.1|	-	0.00018	21.0	1.2	0.0014	18.1	0.8	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|336255027|ref|YP_004598134.1|	-	0.00027	20.2	0.8	0.00036	19.7	0.1	1.5	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|336255027|ref|YP_004598134.1|	-	0.00052	19.2	3.5	0.0017	17.6	0.4	2.4	2	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|336255027|ref|YP_004598134.1|	-	0.00065	19.9	0.0	0.0016	18.6	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|336255027|ref|YP_004598134.1|	-	0.0021	16.9	0.1	0.006	15.3	0.1	1.7	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|336255027|ref|YP_004598134.1|	-	0.0023	17.3	0.1	0.044	13.0	0.0	2.4	2	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336255027|ref|YP_004598134.1|	-	0.0048	16.0	0.2	0.11	11.5	0.2	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|336255027|ref|YP_004598134.1|	-	0.019	15.5	0.0	0.05	14.2	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|336255027|ref|YP_004598134.1|	-	0.023	14.0	0.0	0.035	13.4	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NUDIX	PF00293.28	gi|336255027|ref|YP_004598134.1|	-	0.054	13.5	0.7	0.098	12.7	0.7	1.4	1	0	0	1	1	1	0	NUDIX	domain
Trp_halogenase	PF04820.14	gi|336255027|ref|YP_004598134.1|	-	0.09	11.6	2.0	0.34	9.7	0.0	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
DAO	PF01266.24	gi|336255027|ref|YP_004598134.1|	-	0.13	11.8	10.5	0.1	12.2	0.5	3.3	2	1	1	4	4	4	0	FAD	dependent	oxidoreductase
ACAS_N	PF16177.5	gi|336255027|ref|YP_004598134.1|	-	0.22	11.4	0.9	0.4	10.6	0.9	1.4	1	0	0	1	1	1	0	Acetyl-coenzyme	A	synthetase	N-terminus
Peripla_BP_2	PF01497.18	gi|336255028|ref|YP_004598135.1|	-	4.3e-20	72.3	0.0	5.9e-20	71.9	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|336255028|ref|YP_004598135.1|	-	0.012	15.4	1.2	0.024	14.5	1.2	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SIMPL	PF04402.14	gi|336255029|ref|YP_004598136.1|	-	3.4e-37	128.8	4.1	4.3e-37	128.5	4.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
TAT_signal	PF10518.9	gi|336255029|ref|YP_004598136.1|	-	0.00048	19.9	4.5	0.0012	18.6	4.5	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
OsmC	PF02566.19	gi|336255029|ref|YP_004598136.1|	-	0.063	13.8	2.1	0.45	11.0	0.1	2.4	2	1	0	2	2	2	0	OsmC-like	protein
PALP	PF00291.25	gi|336255030|ref|YP_004598137.1|	-	1.3e-56	192.1	6.3	1.5e-56	191.9	6.3	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
AICARFT_IMPCHas	PF01808.18	gi|336255031|ref|YP_004598138.1|	-	3.4e-86	289.3	0.0	4.5e-86	289.0	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.19	gi|336255031|ref|YP_004598138.1|	-	1.5e-35	122.5	0.0	2.9e-34	118.4	0.0	2.4	1	1	0	1	1	1	1	Formyl	transferase
CoA_binding_2	PF13380.6	gi|336255031|ref|YP_004598138.1|	-	0.0087	16.5	0.2	1.4	9.4	0.0	3.1	3	0	0	3	3	3	1	CoA	binding	domain
Toxin_25	PF08095.11	gi|336255031|ref|YP_004598138.1|	-	0.14	12.1	0.2	0.36	10.8	0.2	1.7	1	0	0	1	1	1	0	Hefutoxin	family
Lyase_1	PF00206.20	gi|336255032|ref|YP_004598139.1|	-	3.2e-51	174.6	0.0	4.2e-51	174.2	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.11	gi|336255032|ref|YP_004598139.1|	-	6.2e-42	142.3	0.0	1.1e-41	141.6	0.0	1.4	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
DUF3944	PF13099.6	gi|336255032|ref|YP_004598139.1|	-	0.2	11.6	1.5	25	4.9	0.0	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3944)
EamA	PF00892.20	gi|336255033|ref|YP_004598140.1|	-	4.2e-10	39.9	15.4	4.6e-10	39.8	15.4	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
Sugar_transport	PF06800.12	gi|336255033|ref|YP_004598140.1|	-	0.0045	16.4	2.7	0.0056	16.0	2.5	1.4	1	1	0	1	1	1	1	Sugar	transport	protein
Mg_trans_NIPA	PF05653.14	gi|336255033|ref|YP_004598140.1|	-	0.058	12.5	3.2	0.069	12.3	2.6	1.3	1	1	0	1	1	1	0	Magnesium	transporter	NIPA
Chloroplast_duf	PF14476.6	gi|336255033|ref|YP_004598140.1|	-	5.1	6.0	5.1	2	7.3	0.4	1.9	2	0	0	2	2	2	0	Petal	formation-expressed
EamA	PF00892.20	gi|336255034|ref|YP_004598141.1|	-	3.2e-08	33.8	13.5	5.2e-08	33.1	13.5	1.3	1	1	0	1	1	1	1	EamA-like	transporter	family
Sugar_transport	PF06800.12	gi|336255034|ref|YP_004598141.1|	-	0.00087	18.7	4.1	0.0011	18.4	4.1	1.1	1	0	0	1	1	1	1	Sugar	transport	protein
Multi_Drug_Res	PF00893.19	gi|336255034|ref|YP_004598141.1|	-	0.23	12.1	9.3	0.51	11.0	3.1	2.2	1	1	1	2	2	2	0	Small	Multidrug	Resistance	protein
7TMR-DISM_7TM	PF07695.11	gi|336255034|ref|YP_004598141.1|	-	1	9.2	14.6	2.7	7.8	3.3	2.0	1	1	1	2	2	2	0	7TM	diverse	intracellular	signalling
Peptidase_M20	PF01546.28	gi|336255035|ref|YP_004598142.1|	-	1.4e-24	86.9	0.0	4.1e-24	85.5	0.0	1.8	2	1	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336255035|ref|YP_004598142.1|	-	8.9e-18	64.2	0.0	1.6e-17	63.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Orn_Arg_deC_N	PF02784.16	gi|336255036|ref|YP_004598143.1|	-	4.3e-41	140.9	0.0	5.3e-41	140.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|336255036|ref|YP_004598143.1|	-	9.1e-21	73.9	0.0	1e-20	73.7	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Ala_racemase_N	PF01168.20	gi|336255036|ref|YP_004598143.1|	-	2.1e-07	30.8	0.0	3.4e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	Alanine	racemase,	N-terminal	domain
THDPS_N_2	PF14805.6	gi|336255038|ref|YP_004598145.1|	-	1.5e-24	86.0	1.5	2.4e-24	85.3	1.5	1.3	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.24	gi|336255038|ref|YP_004598145.1|	-	2e-12	46.3	5.8	6e-05	22.6	0.4	3.4	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336255038|ref|YP_004598145.1|	-	4.5e-07	29.5	11.0	4e-06	26.5	1.0	3.2	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
DapB_C	PF05173.14	gi|336255039|ref|YP_004598146.1|	-	1.2e-36	125.4	0.0	1.6e-36	124.9	0.0	1.2	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.20	gi|336255039|ref|YP_004598146.1|	-	2.5e-30	105.1	0.0	7.5e-30	103.6	0.0	1.7	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|336255039|ref|YP_004598146.1|	-	1.9e-06	28.1	0.3	1.6e-05	25.2	0.1	2.5	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_3	PF03447.16	gi|336255039|ref|YP_004598146.1|	-	5e-05	23.9	0.1	9.8e-05	23.0	0.1	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|336255039|ref|YP_004598146.1|	-	0.00048	20.9	0.0	0.00086	20.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Semialdhyde_dh	PF01118.24	gi|336255039|ref|YP_004598146.1|	-	0.00086	19.7	0.0	0.0014	19.1	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|336255039|ref|YP_004598146.1|	-	0.00089	18.8	0.1	0.0033	16.9	0.0	1.9	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
CoA_binding	PF02629.19	gi|336255039|ref|YP_004598146.1|	-	0.0011	19.7	0.1	0.0025	18.4	0.1	1.6	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding_2	PF13380.6	gi|336255039|ref|YP_004598146.1|	-	0.0025	18.3	0.1	0.0045	17.5	0.1	1.5	1	0	0	1	1	1	1	CoA	binding	domain
RmlD_sub_bind	PF04321.17	gi|336255039|ref|YP_004598146.1|	-	0.0036	16.5	0.0	0.0074	15.4	0.0	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|336255039|ref|YP_004598146.1|	-	0.004	16.7	0.0	0.0085	15.7	0.0	1.6	1	0	0	1	1	1	1	NmrA-like	family
ADH_zinc_N	PF00107.26	gi|336255039|ref|YP_004598146.1|	-	0.0083	16.1	0.2	0.015	15.3	0.2	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.6	gi|336255039|ref|YP_004598146.1|	-	0.022	14.7	0.9	0.044	13.7	0.3	1.9	1	1	1	2	2	2	0	NAD(P)H-binding
Gp_dh_N	PF00044.24	gi|336255039|ref|YP_004598146.1|	-	0.14	12.5	0.4	0.46	10.8	0.0	2.0	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DHDPS	PF00701.22	gi|336255040|ref|YP_004598147.1|	-	1.1e-93	313.2	0.0	1.2e-93	313.0	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ThiG	PF05690.14	gi|336255040|ref|YP_004598147.1|	-	0.019	14.3	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
Peptidase_M48	PF01435.18	gi|336255041|ref|YP_004598148.1|	-	2.8e-37	128.4	0.0	3.4e-37	128.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|336255041|ref|YP_004598148.1|	-	2.2e-07	30.4	0.1	2.1e-06	27.2	0.0	2.1	2	0	0	2	2	2	1	BlaR1	peptidase	M56
MFS_2	PF13347.6	gi|336255041|ref|YP_004598148.1|	-	0.0028	16.3	0.1	0.0028	16.3	0.1	2.0	2	0	0	2	2	2	1	MFS/sugar	transport	protein
SprT-like	PF10263.9	gi|336255041|ref|YP_004598148.1|	-	0.012	15.5	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
DUF2207	PF09972.9	gi|336255041|ref|YP_004598148.1|	-	0.23	10.2	3.9	2	7.1	0.2	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
RhodobacterPufX	PF11511.8	gi|336255041|ref|YP_004598148.1|	-	0.25	11.0	5.6	1.3	8.6	1.8	2.6	2	0	0	2	2	2	0	Intrinsic	membrane	protein	PufX
Orai-1	PF07856.12	gi|336255041|ref|YP_004598148.1|	-	0.35	10.5	5.5	1.3	8.7	0.6	2.2	2	0	0	2	2	2	0	Mediator	of	CRAC	channel	activity
LptF_LptG	PF03739.14	gi|336255041|ref|YP_004598148.1|	-	3.4	6.4	7.0	3.6	6.3	2.6	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	export	system	permease	LptF/LptG
NYN	PF01936.18	gi|336255042|ref|YP_004598149.1|	-	1e-38	133.1	0.3	1.2e-38	132.9	0.3	1.0	1	0	0	1	1	1	1	NYN	domain
TGT_C2	PF14810.6	gi|336255044|ref|YP_004598151.1|	-	1.6e-25	89.0	0.1	3.3e-25	88.0	0.1	1.5	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|336255044|ref|YP_004598151.1|	-	1.2e-18	66.8	0.3	1.9e-18	66.2	0.3	1.3	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|336255044|ref|YP_004598151.1|	-	0.012	15.9	0.0	0.021	15.1	0.0	1.5	1	1	0	1	1	1	0	UPF0113	PUA	domain
DUF1700	PF08006.11	gi|336255045|ref|YP_004598152.1|	-	0.37	10.3	2.4	0.42	10.1	2.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
NAC	PF01849.18	gi|336255046|ref|YP_004598153.1|	-	1.2e-16	60.4	0.1	1.7e-16	59.9	0.1	1.2	1	0	0	1	1	1	1	NAC	domain
UBA_4	PF14555.6	gi|336255046|ref|YP_004598153.1|	-	0.0034	17.2	0.6	0.0077	16.0	0.6	1.5	1	0	0	1	1	1	1	UBA-like	domain
CUE	PF02845.16	gi|336255046|ref|YP_004598153.1|	-	0.02	14.6	0.1	0.02	14.6	0.1	2.0	2	0	0	2	2	2	0	CUE	domain
TFIID_30kDa	PF03540.13	gi|336255046|ref|YP_004598153.1|	-	0.093	12.7	0.0	1	9.3	0.0	2.3	2	1	0	2	2	2	0	Transcription	initiation	factor	TFIID	23-30kDa	subunit
LptC	PF06835.13	gi|336255046|ref|YP_004598153.1|	-	0.19	11.3	0.0	0.43	10.1	0.0	1.5	2	0	0	2	2	2	0	Lipopolysaccharide-assembly,	LptC-related
GCD14	PF08704.10	gi|336255047|ref|YP_004598154.1|	-	6.6e-18	65.3	0.1	2e-14	53.9	0.0	2.1	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|336255047|ref|YP_004598154.1|	-	3.2e-09	36.8	0.0	4.1e-09	36.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336255047|ref|YP_004598154.1|	-	1.9e-08	34.9	0.6	3.9e-08	33.9	0.6	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336255047|ref|YP_004598154.1|	-	1.4e-07	32.0	0.4	2.5e-07	31.2	0.4	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|336255047|ref|YP_004598154.1|	-	2.3e-07	30.5	0.5	2.9e-07	30.2	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.6	gi|336255047|ref|YP_004598154.1|	-	1.8e-06	28.9	0.4	4e-06	27.8	0.4	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|336255047|ref|YP_004598154.1|	-	2.1e-06	27.4	0.2	4.9e-06	26.2	0.2	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|336255047|ref|YP_004598154.1|	-	3.2e-05	23.8	0.1	4.1e-05	23.4	0.1	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_23	PF13489.6	gi|336255047|ref|YP_004598154.1|	-	7e-05	22.7	0.0	0.00013	21.9	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|336255047|ref|YP_004598154.1|	-	0.00015	21.0	0.0	0.00019	20.7	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
RrnaAD	PF00398.20	gi|336255047|ref|YP_004598154.1|	-	0.00034	19.8	0.0	0.00045	19.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Cons_hypoth95	PF03602.15	gi|336255047|ref|YP_004598154.1|	-	0.00067	19.3	0.0	0.00089	18.9	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_12	PF08242.12	gi|336255047|ref|YP_004598154.1|	-	0.0014	19.3	0.2	0.0029	18.3	0.2	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|336255047|ref|YP_004598154.1|	-	0.0023	17.5	0.0	0.0032	17.0	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
ADH_zinc_N	PF00107.26	gi|336255047|ref|YP_004598154.1|	-	0.005	16.8	0.5	0.0071	16.3	0.5	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|336255047|ref|YP_004598154.1|	-	0.0052	17.8	1.2	0.02	16.0	0.2	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
MetW	PF07021.12	gi|336255047|ref|YP_004598154.1|	-	0.0097	15.5	0.2	0.015	14.9	0.2	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Met_10	PF02475.16	gi|336255047|ref|YP_004598154.1|	-	0.014	15.2	0.0	0.02	14.7	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
CMAS	PF02353.20	gi|336255047|ref|YP_004598154.1|	-	0.02	14.2	0.0	0.025	13.9	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|336255047|ref|YP_004598154.1|	-	0.025	14.5	0.1	0.041	13.8	0.1	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
TFIIS_C	PF01096.18	gi|336255048|ref|YP_004598155.1|	-	2.8e-19	68.7	5.0	2.8e-19	68.7	5.0	3.0	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|336255048|ref|YP_004598155.1|	-	1.9e-08	34.0	1.3	1.9e-08	34.0	1.3	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|336255048|ref|YP_004598155.1|	-	2.8e-06	27.2	4.3	0.0015	18.4	0.3	2.4	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|336255048|ref|YP_004598155.1|	-	2.2e-05	23.8	7.2	0.001	18.6	0.3	3.5	3	1	0	3	3	3	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|336255048|ref|YP_004598155.1|	-	0.00019	21.4	9.3	0.011	15.8	0.5	2.8	2	1	0	2	2	2	2	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336255048|ref|YP_004598155.1|	-	0.00034	19.9	10.3	0.16	11.5	2.6	3.3	3	1	0	3	3	3	2	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|336255048|ref|YP_004598155.1|	-	0.00049	20.0	10.6	0.027	14.4	0.8	2.6	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336255048|ref|YP_004598155.1|	-	0.00091	19.1	1.2	0.00091	19.1	1.2	3.2	3	0	0	3	3	3	1	PhnA	Zinc-Ribbon
FdhE	PF04216.12	gi|336255048|ref|YP_004598155.1|	-	0.0034	17.3	1.5	0.0049	16.8	0.1	1.8	2	0	0	2	2	2	1	Protein	involved	in	formate	dehydrogenase	formation
DUF3797	PF12677.7	gi|336255048|ref|YP_004598155.1|	-	0.063	13.2	0.2	0.063	13.2	0.2	2.6	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF3797)
Ribosomal_L37ae	PF01780.19	gi|336255048|ref|YP_004598155.1|	-	0.066	13.3	0.3	0.066	13.3	0.3	2.6	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
HalOD2	PF18547.1	gi|336255048|ref|YP_004598155.1|	-	0.091	12.7	12.3	0.18	11.7	0.2	3.9	3	1	1	4	4	4	0	Halobacterial	output	domain	2
ArfGap	PF01412.18	gi|336255048|ref|YP_004598155.1|	-	0.1	12.7	0.3	0.1	12.7	0.3	2.1	2	1	0	2	2	2	0	Putative	GTPase	activating	protein	for	Arf
Nudix_N_2	PF14803.6	gi|336255048|ref|YP_004598155.1|	-	0.1	12.5	12.4	2.3	8.2	3.0	3.8	3	1	0	3	3	3	0	Nudix	N-terminal
DUF3268	PF11672.8	gi|336255048|ref|YP_004598155.1|	-	0.12	12.7	0.6	0.12	12.7	0.6	2.1	2	1	0	2	2	2	0	zinc-finger-containing	domain
TackOD1	PF18551.1	gi|336255048|ref|YP_004598155.1|	-	0.14	11.8	6.3	2.5	7.8	6.3	2.5	1	1	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-UBP	PF02148.19	gi|336255048|ref|YP_004598155.1|	-	0.18	12.2	4.6	1.8	8.9	0.3	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zf-RRN7	PF11781.8	gi|336255048|ref|YP_004598155.1|	-	0.22	11.2	12.8	8.9	6.1	0.1	4.1	3	1	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DUF2387	PF09526.10	gi|336255048|ref|YP_004598155.1|	-	0.26	11.5	7.6	3.9	7.7	2.6	2.4	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zinc-ribbons_6	PF07191.12	gi|336255048|ref|YP_004598155.1|	-	0.31	11.0	9.2	2.9	8.0	0.4	2.7	2	1	0	2	2	2	0	zinc-ribbons
zf-IS66	PF13005.7	gi|336255048|ref|YP_004598155.1|	-	0.43	11.0	6.9	9.2	6.8	0.0	3.9	4	0	0	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
HypA	PF01155.19	gi|336255048|ref|YP_004598155.1|	-	0.49	10.4	10.1	94	3.1	0.3	3.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|336255048|ref|YP_004598155.1|	-	0.61	10.3	12.1	1.1	9.5	0.2	3.9	3	1	0	3	3	3	0	Zinc	ribbon	domain
zf-RRPl_C4	PF17026.5	gi|336255048|ref|YP_004598155.1|	-	0.65	10.1	4.9	3.3	7.8	4.9	1.9	1	1	0	1	1	1	0	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
zinc_ribbon_2	PF13240.6	gi|336255048|ref|YP_004598155.1|	-	0.74	9.6	15.4	0.79	9.5	0.2	3.9	3	1	0	4	4	4	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|336255048|ref|YP_004598155.1|	-	1.3	9.2	15.2	4.2	7.5	0.3	4.1	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
Prok-RING_1	PF14446.6	gi|336255048|ref|YP_004598155.1|	-	1.4	8.9	8.8	1.5	8.8	0.7	3.0	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
zf-RING_7	PF02591.15	gi|336255048|ref|YP_004598155.1|	-	2.1	8.6	13.9	5.7	7.2	1.1	4.0	4	1	0	4	4	4	0	C4-type	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|336255048|ref|YP_004598155.1|	-	2.4	8.0	17.6	6.8	6.5	1.7	4.0	3	1	1	4	4	4	0	Rubredoxin	metal	binding	domain
A2L_zn_ribbon	PF08792.10	gi|336255048|ref|YP_004598155.1|	-	2.4	7.9	12.9	28	4.6	0.7	4.1	3	1	1	4	4	4	0	A2L	zinc	ribbon	domain
Ribosomal_S27	PF01599.19	gi|336255048|ref|YP_004598155.1|	-	2.5	8.4	7.3	5.1	7.3	3.0	2.5	2	0	0	2	2	2	0	Ribosomal	protein	S27a
zf_UBZ	PF18439.1	gi|336255048|ref|YP_004598155.1|	-	2.8	7.6	12.1	1.3	8.7	0.1	3.8	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-RING_5	PF14634.6	gi|336255048|ref|YP_004598155.1|	-	4.8	7.2	8.8	3.2	7.8	1.2	2.8	2	2	1	3	3	3	0	zinc-RING	finger	domain
Zn_ribbon_recom	PF13408.6	gi|336255048|ref|YP_004598155.1|	-	5	7.7	10.3	39	4.9	0.1	3.6	3	1	0	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
Rdx	PF10262.9	gi|336255048|ref|YP_004598155.1|	-	5.3	7.3	5.5	39	4.5	0.0	3.3	3	1	1	4	4	4	0	Rdx	family
DNA_RNApol_7kD	PF03604.13	gi|336255048|ref|YP_004598155.1|	-	7.8	6.3	11.7	38	4.1	0.1	3.9	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_15	PF17032.5	gi|336255048|ref|YP_004598155.1|	-	9	7.1	11.3	2.8e+03	-0.8	11.3	3.1	1	1	0	1	1	1	0	zinc-ribbon	family
Zn_ribbon_SprT	PF17283.2	gi|336255048|ref|YP_004598155.1|	-	9.4	6.2	8.1	14	5.7	0.5	3.0	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
FliD_N	PF02465.18	gi|336255049|ref|YP_004598156.1|	-	0.11	13.2	0.0	0.38	11.5	0.0	1.9	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
ABC_tran_CTD	PF16326.5	gi|336255049|ref|YP_004598156.1|	-	8.5	6.7	13.9	1.5	9.1	0.8	4.2	4	1	1	5	5	5	0	ABC	transporter	C-terminal	domain
MFS_1	PF07690.16	gi|336255051|ref|YP_004598158.1|	-	3.7e-48	164.2	52.1	4e-25	88.5	25.9	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|336255051|ref|YP_004598158.1|	-	3.9e-10	39.2	27.5	3.8e-08	32.6	4.5	3.1	1	1	1	3	3	3	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|336255051|ref|YP_004598158.1|	-	1.4e-06	27.5	10.7	6.3e-06	25.3	10.7	2.0	1	1	0	1	1	1	1	MFS_1	like	family
ALMT	PF11744.8	gi|336255051|ref|YP_004598158.1|	-	0.015	14.1	0.0	0.024	13.5	0.0	1.2	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
PqqD	PF05402.12	gi|336255052|ref|YP_004598159.1|	-	0.02	15.2	0.1	0.059	13.7	0.1	1.9	1	0	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HTH_32	PF13565.6	gi|336255052|ref|YP_004598159.1|	-	0.021	15.5	0.3	6.3	7.5	0.0	2.4	2	1	0	2	2	2	0	Homeodomain-like	domain
Abhydrolase_6	PF12697.7	gi|336255053|ref|YP_004598160.1|	-	1.3e-26	94.6	4.5	1.8e-26	94.1	4.5	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336255053|ref|YP_004598160.1|	-	2e-12	47.3	0.0	2.2e-10	40.7	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336255053|ref|YP_004598160.1|	-	5.4e-09	35.7	0.0	8.9e-09	35.0	0.0	1.4	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
DUF4198	PF10670.9	gi|336255053|ref|YP_004598160.1|	-	0.029	14.8	0.0	0.04	14.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4198)
CBM_35	PF16990.5	gi|336255054|ref|YP_004598161.1|	-	0.0075	16.5	0.0	0.0093	16.2	0.0	1.2	1	0	0	1	1	1	1	Carbohydrate	binding	module	(family	35)
HEAT_2	PF13646.6	gi|336255055|ref|YP_004598162.1|	-	1.3e-05	25.4	1.4	0.00044	20.6	0.8	3.0	2	1	0	2	2	2	1	HEAT	repeats
HEAT_EZ	PF13513.6	gi|336255055|ref|YP_004598162.1|	-	0.04	14.4	0.3	0.13	12.8	0.0	1.9	2	0	0	2	2	2	0	HEAT-like	repeat
MeaB	PF03308.16	gi|336255056|ref|YP_004598163.1|	-	4e-88	294.9	4.2	5e-88	294.6	4.2	1.1	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|336255056|ref|YP_004598163.1|	-	9.2e-07	28.6	1.3	9.4e-06	25.3	1.3	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.22	gi|336255056|ref|YP_004598163.1|	-	1.7e-05	24.5	0.3	5.9e-05	22.8	0.3	1.8	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.17	gi|336255056|ref|YP_004598163.1|	-	6e-05	22.9	0.0	0.00018	21.4	0.0	1.7	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.6	gi|336255056|ref|YP_004598163.1|	-	9.4e-05	22.2	0.0	0.00025	20.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|336255056|ref|YP_004598163.1|	-	0.00013	22.0	0.1	0.00036	20.5	0.1	1.8	1	0	0	1	1	1	1	NTPase
GTP_EFTU	PF00009.27	gi|336255056|ref|YP_004598163.1|	-	0.0002	20.9	0.0	0.45	10.0	0.0	2.3	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
ABC_tran	PF00005.27	gi|336255056|ref|YP_004598163.1|	-	0.00043	20.8	0.1	0.00083	19.9	0.1	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_16	PF13191.6	gi|336255056|ref|YP_004598163.1|	-	0.00053	20.4	0.4	0.0032	17.9	0.1	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336255056|ref|YP_004598163.1|	-	0.0019	18.5	0.0	0.0077	16.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|336255056|ref|YP_004598163.1|	-	0.002	18.7	0.3	0.012	16.1	0.1	2.3	3	0	0	3	3	3	1	AAA	domain
AAA_29	PF13555.6	gi|336255056|ref|YP_004598163.1|	-	0.0035	17.0	0.1	0.0079	15.9	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|336255056|ref|YP_004598163.1|	-	0.0055	16.0	0.0	0.015	14.6	0.0	1.7	1	0	0	1	1	1	1	Zeta	toxin
MobB	PF03205.14	gi|336255056|ref|YP_004598163.1|	-	0.0087	16.0	0.1	0.031	14.2	0.1	2.1	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.6	gi|336255056|ref|YP_004598163.1|	-	0.011	15.9	0.2	0.22	11.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|336255056|ref|YP_004598163.1|	-	0.012	14.6	0.0	0.035	13.0	0.0	1.7	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_28	PF13521.6	gi|336255056|ref|YP_004598163.1|	-	0.013	15.7	1.5	0.019	15.2	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
KAP_NTPase	PF07693.14	gi|336255056|ref|YP_004598163.1|	-	0.016	14.5	0.0	0.026	13.8	0.0	1.3	1	0	0	1	1	1	0	KAP	family	P-loop	domain
MMR_HSR1	PF01926.23	gi|336255056|ref|YP_004598163.1|	-	0.026	14.6	0.3	0.059	13.5	0.1	2.0	2	1	0	2	2	1	0	50S	ribosome-binding	GTPase
PRK	PF00485.18	gi|336255056|ref|YP_004598163.1|	-	0.036	13.8	0.1	0.077	12.7	0.1	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
KTI12	PF08433.10	gi|336255056|ref|YP_004598163.1|	-	0.043	13.3	0.0	0.074	12.5	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
RsgA_GTPase	PF03193.16	gi|336255056|ref|YP_004598163.1|	-	0.048	13.6	0.1	0.12	12.3	0.0	1.8	2	0	0	2	2	1	0	RsgA	GTPase
NACHT	PF05729.12	gi|336255056|ref|YP_004598163.1|	-	0.065	13.2	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.22	gi|336255056|ref|YP_004598163.1|	-	0.082	12.1	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Ploopntkinase3	PF18751.1	gi|336255056|ref|YP_004598163.1|	-	0.083	12.8	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
AAA_17	PF13207.6	gi|336255056|ref|YP_004598163.1|	-	0.084	13.3	0.0	0.084	13.3	0.0	2.3	3	0	0	3	3	1	0	AAA	domain
AAA_19	PF13245.6	gi|336255056|ref|YP_004598163.1|	-	0.088	13.1	0.1	0.3	11.4	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
CbiA	PF01656.23	gi|336255056|ref|YP_004598163.1|	-	0.097	12.7	0.0	0.18	11.8	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|336255056|ref|YP_004598163.1|	-	0.19	11.1	1.9	0.74	9.2	0.2	2.1	2	0	0	2	2	2	0	NUBPL	iron-transfer	P-loop	NTPase
DUF815	PF05673.13	gi|336255056|ref|YP_004598163.1|	-	0.2	10.8	0.0	0.33	10.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Rnk_N	PF14760.6	gi|336255056|ref|YP_004598163.1|	-	6	7.4	9.1	6.7	7.3	1.6	3.2	2	1	0	2	2	2	0	Rnk	N-terminus
B12-binding	PF02310.19	gi|336255057|ref|YP_004598164.1|	-	3.3e-23	82.0	0.9	3.8e-23	81.8	0.9	1.0	1	0	0	1	1	1	1	B12	binding	domain
Staph_haemo	PF05480.11	gi|336255057|ref|YP_004598164.1|	-	0.0074	16.0	0.2	0.33	10.8	0.0	2.4	2	0	0	2	2	2	1	Staphylococcus	haemolytic	protein
DUF1611_N	PF17396.2	gi|336255057|ref|YP_004598164.1|	-	0.028	14.6	0.2	1	9.6	0.1	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
BcrAD_BadFG	PF01869.20	gi|336255057|ref|YP_004598164.1|	-	0.096	12.2	0.0	0.15	11.5	0.0	1.3	1	1	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
Peripla_BP_6	PF13458.6	gi|336255057|ref|YP_004598164.1|	-	0.11	12.2	0.0	0.21	11.2	0.0	1.5	1	1	0	1	1	1	0	Periplasmic	binding	protein
HD	PF01966.22	gi|336255058|ref|YP_004598165.1|	-	1.2e-15	57.8	1.0	2.1e-15	57.0	1.0	1.4	1	0	0	1	1	1	1	HD	domain
HD_4	PF13328.6	gi|336255058|ref|YP_004598165.1|	-	0.017	14.9	0.1	0.037	13.8	0.1	1.5	1	0	0	1	1	1	0	HD	domain
TraI_2	PF07514.11	gi|336255058|ref|YP_004598165.1|	-	0.041	12.8	0.1	1.4	7.7	0.1	2.3	2	1	0	2	2	2	0	Putative	helicase
LysE	PF01810.18	gi|336255059|ref|YP_004598166.1|	-	1.1e-23	83.7	3.1	1.1e-23	83.7	3.1	2.1	1	1	1	2	2	2	2	LysE	type	translocator
MFS_1	PF07690.16	gi|336255060|ref|YP_004598167.1|	-	1.2e-27	96.8	67.4	4.1e-16	58.9	41.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|336255060|ref|YP_004598167.1|	-	1.6e-07	31.0	44.0	2e-07	30.6	44.0	1.0	1	0	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
Methyltransf_25	PF13649.6	gi|336255061|ref|YP_004598168.1|	-	2.7e-15	56.8	0.1	4.6e-15	56.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336255061|ref|YP_004598168.1|	-	1.7e-12	47.8	0.1	2.9e-12	47.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336255061|ref|YP_004598168.1|	-	6.9e-11	41.9	0.0	9e-11	41.5	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|336255061|ref|YP_004598168.1|	-	7.2e-11	42.2	0.0	9.4e-11	41.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336255061|ref|YP_004598168.1|	-	2.3e-09	37.2	0.0	2.9e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336255061|ref|YP_004598168.1|	-	3.8e-09	37.2	0.1	6.1e-09	36.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|336255061|ref|YP_004598168.1|	-	5.3e-09	35.8	0.0	6.9e-09	35.4	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_15	PF09445.10	gi|336255061|ref|YP_004598168.1|	-	3.5e-05	23.4	0.0	3.5e-05	23.4	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|336255061|ref|YP_004598168.1|	-	5.6e-05	22.8	0.0	8.9e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
TPMT	PF05724.11	gi|336255061|ref|YP_004598168.1|	-	0.00068	19.4	0.0	0.00088	19.0	0.0	1.2	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
NodS	PF05401.11	gi|336255061|ref|YP_004598168.1|	-	0.0012	18.6	0.0	0.0016	18.1	0.0	1.3	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
CMAS	PF02353.20	gi|336255061|ref|YP_004598168.1|	-	0.0016	17.8	0.0	0.0023	17.3	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|336255061|ref|YP_004598168.1|	-	0.045	13.7	0.0	0.062	13.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
DUF938	PF06080.12	gi|336255061|ref|YP_004598168.1|	-	0.048	13.4	0.0	0.076	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_24	PF13578.6	gi|336255061|ref|YP_004598168.1|	-	0.06	14.4	0.2	0.12	13.4	0.2	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
3HCDH_N	PF02737.18	gi|336255061|ref|YP_004598168.1|	-	0.066	13.1	0.1	0.12	12.2	0.0	1.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UPF0020	PF01170.18	gi|336255061|ref|YP_004598168.1|	-	0.067	12.9	0.0	0.096	12.4	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
PCMT	PF01135.19	gi|336255061|ref|YP_004598168.1|	-	0.086	12.6	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
AhpC-TSA	PF00578.21	gi|336255062|ref|YP_004598169.1|	-	2.9e-05	24.0	0.0	3.9e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.6	gi|336255062|ref|YP_004598169.1|	-	0.00047	20.4	0.0	0.00065	20.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
Redoxin	PF08534.10	gi|336255062|ref|YP_004598169.1|	-	0.0011	18.7	0.0	0.0014	18.4	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin	PF00085.20	gi|336255062|ref|YP_004598169.1|	-	0.0023	17.9	0.0	0.013	15.4	0.0	1.9	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336255062|ref|YP_004598169.1|	-	0.066	13.7	0.0	0.089	13.2	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
Topoisom_bac	PF01131.20	gi|336255063|ref|YP_004598170.1|	-	2.2e-123	412.3	0.0	2.7e-123	412.0	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.19	gi|336255063|ref|YP_004598170.1|	-	7.8e-20	70.4	14.4	2.4e-13	49.6	1.0	3.6	4	0	0	4	4	4	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.22	gi|336255063|ref|YP_004598170.1|	-	1.3e-16	60.7	0.1	2.6e-16	59.7	0.1	1.5	1	0	0	1	1	1	1	Toprim	domain
HHH_5	PF14520.6	gi|336255063|ref|YP_004598170.1|	-	1.4e-08	35.2	2.1	1.8e-08	34.9	0.2	2.3	2	0	0	2	2	1	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|336255063|ref|YP_004598170.1|	-	0.028	14.7	0.0	0.079	13.2	0.0	1.8	1	0	0	1	1	1	0	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|336255063|ref|YP_004598170.1|	-	0.042	13.7	0.0	0.16	11.9	0.0	2.0	2	0	0	2	2	2	0	Fingers	domain	of	DNA	polymerase	lambda
DUF4332	PF14229.6	gi|336255063|ref|YP_004598170.1|	-	0.17	12.2	0.0	0.38	11.0	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
zinc_ribbon_2	PF13240.6	gi|336255063|ref|YP_004598170.1|	-	0.23	11.2	3.1	18	5.2	0.1	2.9	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|336255063|ref|YP_004598170.1|	-	0.72	9.6	2.2	30	4.4	0.2	2.7	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|336255063|ref|YP_004598170.1|	-	1.4	8.5	8.9	0.81	9.2	0.1	3.9	3	1	0	3	3	3	0	TFIIB	zinc-binding
Ogr_Delta	PF04606.12	gi|336255063|ref|YP_004598170.1|	-	5.6	7.0	6.3	2.3	8.2	0.0	3.1	3	0	0	3	3	3	0	Ogr/Delta-like	zinc	finger
Glyco_hydro_97	PF10566.9	gi|336255065|ref|YP_004598172.1|	-	5.5e-90	301.5	0.0	8.2e-90	300.9	0.0	1.2	1	0	0	1	1	1	1	Glycoside	hydrolase	97
GH97_N	PF14508.6	gi|336255065|ref|YP_004598172.1|	-	9.1e-62	208.6	0.0	2.1e-61	207.4	0.0	1.6	2	0	0	2	2	2	1	Glycosyl-hydrolase	97	N-terminal
Glucodextran_C	PF09985.9	gi|336255065|ref|YP_004598172.1|	-	3.1e-56	190.4	0.0	8.2e-56	189.0	0.0	1.7	1	0	0	1	1	1	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
GH97_C	PF14509.6	gi|336255065|ref|YP_004598172.1|	-	5.9e-30	103.4	0.0	1.5e-29	102.0	0.0	1.8	1	0	0	1	1	1	1	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
CBM_35	PF16990.5	gi|336255065|ref|YP_004598172.1|	-	0.022	15.0	0.0	0.079	13.2	0.0	1.8	1	1	0	1	1	1	0	Carbohydrate	binding	module	(family	35)
Polysacc_synt_3	PF13440.6	gi|336255066|ref|YP_004598173.1|	-	9.1e-28	97.3	16.8	1.9e-27	96.2	16.8	1.5	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|336255066|ref|YP_004598173.1|	-	2.3e-24	86.2	41.0	9.5e-24	84.2	25.0	2.0	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|336255066|ref|YP_004598173.1|	-	1.4e-11	44.6	11.5	1.4e-11	44.6	11.5	4.4	2	2	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF3426	PF11906.8	gi|336255067|ref|YP_004598174.1|	-	0.00021	21.5	0.0	0.00039	20.6	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3426)
DUF2393	PF09624.10	gi|336255067|ref|YP_004598174.1|	-	0.066	13.2	0.0	0.08	12.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2393)
DUF2103	PF09876.9	gi|336255068|ref|YP_004598175.1|	-	1.6e-39	133.8	0.2	2.9e-39	133.0	0.2	1.4	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
Ribosomal_L37ae	PF01780.19	gi|336255070|ref|YP_004598177.1|	-	2.1e-22	79.0	0.1	2.5e-22	78.8	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
DNA_RNApol_7kD	PF03604.13	gi|336255071|ref|YP_004598178.1|	-	1.9e-10	40.2	6.8	2.3e-10	39.9	6.8	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|336255071|ref|YP_004598178.1|	-	5.9e-05	22.3	0.2	0.0044	16.4	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.19	gi|336255071|ref|YP_004598178.1|	-	0.00072	19.6	0.5	0.00074	19.5	0.5	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|336255071|ref|YP_004598178.1|	-	0.00094	18.7	1.7	0.21	11.2	0.4	2.1	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|336255071|ref|YP_004598178.1|	-	0.0036	17.3	4.6	0.077	13.0	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-CHCC	PF10276.9	gi|336255071|ref|YP_004598178.1|	-	0.0037	17.3	0.5	0.0065	16.5	0.5	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
zinc_ribbon_2	PF13240.6	gi|336255071|ref|YP_004598178.1|	-	0.0057	16.3	2.2	0.17	11.6	0.3	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336255071|ref|YP_004598178.1|	-	0.0067	16.4	1.1	0.014	15.4	1.1	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.10	gi|336255071|ref|YP_004598178.1|	-	0.0078	15.9	1.0	0.7	9.7	2.3	2.1	1	1	1	2	2	2	2	A2L	zinc	ribbon	domain
YacG	PF03884.14	gi|336255071|ref|YP_004598178.1|	-	0.012	15.3	0.2	0.33	10.7	0.0	2.0	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
RNHCP	PF12647.7	gi|336255071|ref|YP_004598178.1|	-	0.014	15.4	0.3	0.015	15.3	0.3	1.1	1	0	0	1	1	1	0	RNHCP	domain
Sgf11	PF08209.11	gi|336255071|ref|YP_004598178.1|	-	0.017	14.7	2.2	0.84	9.2	0.3	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Cys_rich_CPXG	PF14255.6	gi|336255071|ref|YP_004598178.1|	-	0.023	14.6	0.2	0.092	12.7	0.0	2.0	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Lar_restr_allev	PF14354.6	gi|336255071|ref|YP_004598178.1|	-	0.03	14.7	0.7	0.081	13.3	0.0	1.8	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zinc-ribbons_6	PF07191.12	gi|336255071|ref|YP_004598178.1|	-	0.036	14.0	0.8	0.056	13.4	0.8	1.3	1	1	0	1	1	1	0	zinc-ribbons
Anti-TRAP	PF15777.5	gi|336255071|ref|YP_004598178.1|	-	0.043	13.8	0.1	0.049	13.6	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DUF951	PF06107.11	gi|336255071|ref|YP_004598178.1|	-	0.051	13.5	0.5	3	7.8	0.1	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
zf-Di19	PF05605.12	gi|336255071|ref|YP_004598178.1|	-	0.059	13.7	0.1	0.48	10.8	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zinc_ribbon_13	PF09855.9	gi|336255071|ref|YP_004598178.1|	-	0.06	13.5	0.7	0.15	12.2	0.1	1.8	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
DUF3268	PF11672.8	gi|336255071|ref|YP_004598178.1|	-	0.092	13.1	1.1	0.39	11.1	0.1	1.9	1	1	1	2	2	2	0	zinc-finger-containing	domain
OrfB_Zn_ribbon	PF07282.11	gi|336255071|ref|YP_004598178.1|	-	0.12	12.4	3.3	0.19	11.7	2.9	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|336255071|ref|YP_004598178.1|	-	0.12	11.9	3.4	0.81	9.3	3.9	1.8	1	1	1	2	2	2	0	TFIIB	zinc-binding
CpXC	PF14353.6	gi|336255071|ref|YP_004598178.1|	-	0.17	12.0	1.2	0.43	10.6	0.2	1.8	1	1	1	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|336255071|ref|YP_004598178.1|	-	0.22	11.7	4.2	0.52	10.5	4.2	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|336255071|ref|YP_004598178.1|	-	0.4	10.6	5.7	17	5.4	5.7	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Thioredoxin_4	PF13462.6	gi|336255071|ref|YP_004598178.1|	-	0.58	10.3	1.8	0.68	10.1	0.0	1.8	1	1	1	2	2	2	0	Thioredoxin
Pcc1	PF09341.10	gi|336255072|ref|YP_004598179.1|	-	2.9e-11	43.3	0.7	3.2e-11	43.2	0.7	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Beta-lactamase	PF00144.24	gi|336255073|ref|YP_004598180.1|	-	2.4e-68	230.8	0.5	3.1e-68	230.4	0.5	1.1	1	0	0	1	1	1	1	Beta-lactamase
Pab87_oct	PF13969.6	gi|336255073|ref|YP_004598180.1|	-	9.6e-08	32.0	0.0	2e-07	31.0	0.0	1.5	1	0	0	1	1	1	1	Pab87	octamerisation	domain
MDMPI_N	PF11716.8	gi|336255073|ref|YP_004598180.1|	-	9.6	6.9	10.2	6.5	7.4	1.6	3.3	2	1	1	3	3	3	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
VEGFR-2_TMD	PF17988.1	gi|336255076|ref|YP_004598183.1|	-	0.35	10.3	4.6	0.87	9.1	4.6	1.7	1	0	0	1	1	1	0	VEGFR-2	Transmembrane	domain
DUF2797	PF10977.8	gi|336255077|ref|YP_004598184.1|	-	1.2e-30	107.2	8.9	1.1e-28	100.8	8.9	2.2	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2797)
SoxG	PF04268.12	gi|336255077|ref|YP_004598184.1|	-	0.064	13.4	0.0	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	Sarcosine	oxidase,	gamma	subunit	family
BsuPI	PF12690.7	gi|336255078|ref|YP_004598185.1|	-	3.8e-33	113.5	0.1	4.2e-33	113.4	0.1	1.1	1	0	0	1	1	1	1	Intracellular	proteinase	inhibitor
CPT_N	PF16484.5	gi|336255078|ref|YP_004598185.1|	-	0.029	14.4	0.1	0.055	13.5	0.1	1.5	1	0	0	1	1	1	0	Carnitine	O-palmitoyltransferase	N-terminus
DUF11	PF01345.18	gi|336255078|ref|YP_004598185.1|	-	0.036	14.4	0.0	0.052	13.9	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
DUF4232	PF14016.6	gi|336255078|ref|YP_004598185.1|	-	0.055	13.6	0.1	0.086	13.0	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4232)
Glyco_hydr_116N	PF12215.8	gi|336255078|ref|YP_004598185.1|	-	0.084	12.3	0.0	0.09	12.2	0.0	1.1	1	0	0	1	1	1	0	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
DUF5067	PF16729.5	gi|336255078|ref|YP_004598185.1|	-	0.2	11.6	0.0	0.24	11.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5067)
CbiX	PF01903.17	gi|336255081|ref|YP_004598188.1|	-	3.7e-44	149.4	0.6	6.8e-22	77.8	0.1	2.2	2	0	0	2	2	2	2	CbiX
CbiK	PF06180.11	gi|336255081|ref|YP_004598188.1|	-	3.1e-08	33.3	0.1	0.00019	20.8	0.2	2.1	1	1	0	2	2	2	2	Cobalt	chelatase	(CbiK)
LTV	PF04180.14	gi|336255081|ref|YP_004598188.1|	-	0.011	15.5	0.5	0.13	12.0	0.0	2.0	1	1	1	2	2	2	0	Low	temperature	viability	protein
DR2241	PF18069.1	gi|336255082|ref|YP_004598189.1|	-	7.4e-46	154.6	0.4	7.4e-46	154.6	0.4	2.3	2	0	0	2	2	2	1	DR2241	stabilising	domain
Fer4_23	PF18009.1	gi|336255082|ref|YP_004598189.1|	-	3.3e-31	107.6	0.4	6.6e-31	106.6	0.4	1.5	1	0	0	1	1	1	1	4Fe-4S	iron-sulfur	cluster	binding	domain
Trm112p	PF03966.16	gi|336255084|ref|YP_004598191.1|	-	2.2e-09	37.8	1.0	4.8e-09	36.7	1.0	1.6	1	1	0	1	1	1	1	Trm112p-like	protein
DUF1451	PF07295.11	gi|336255084|ref|YP_004598191.1|	-	0.012	15.6	0.1	0.014	15.4	0.1	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Adenylsucc_synt	PF00709.21	gi|336255085|ref|YP_004598192.1|	-	2.5e-154	514.2	0.1	2.9e-154	514.0	0.1	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
HTH_12	PF08461.10	gi|336255086|ref|YP_004598193.1|	-	0.009	15.9	0.1	0.017	15.1	0.0	1.6	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_24	PF13412.6	gi|336255086|ref|YP_004598193.1|	-	0.012	15.2	0.4	0.021	14.4	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336255086|ref|YP_004598193.1|	-	0.026	14.4	0.1	0.056	13.3	0.1	1.5	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|336255086|ref|YP_004598193.1|	-	0.029	14.3	0.3	0.044	13.7	0.1	1.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF977	PF06163.11	gi|336255086|ref|YP_004598193.1|	-	0.031	14.2	0.0	0.035	14.1	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
Phage_rep_org_N	PF09681.10	gi|336255086|ref|YP_004598193.1|	-	0.049	13.6	0.0	0.092	12.7	0.0	1.5	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF3450	PF11932.8	gi|336255087|ref|YP_004598194.1|	-	6.9e-05	22.3	4.0	0.00014	21.2	4.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
DUF3552	PF12072.8	gi|336255087|ref|YP_004598194.1|	-	0.00052	19.5	9.3	0.00098	18.6	9.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3552)
CENP-Q	PF13094.6	gi|336255087|ref|YP_004598194.1|	-	0.0011	19.2	2.1	0.0033	17.6	2.1	1.8	1	0	0	1	1	1	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
HMMR_N	PF15905.5	gi|336255087|ref|YP_004598194.1|	-	0.0014	18.2	7.6	0.0023	17.4	7.6	1.2	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
FlxA	PF14282.6	gi|336255087|ref|YP_004598194.1|	-	0.0019	18.1	3.1	0.0019	18.1	3.1	2.3	2	1	1	3	3	1	1	FlxA-like	protein
DUF812	PF05667.11	gi|336255087|ref|YP_004598194.1|	-	0.0021	17.0	9.0	0.0029	16.6	9.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
Tektin	PF03148.14	gi|336255087|ref|YP_004598194.1|	-	0.0032	16.3	3.1	0.0032	16.3	3.1	1.8	2	0	0	2	2	2	1	Tektin	family
Spc29	PF17082.5	gi|336255087|ref|YP_004598194.1|	-	0.0033	17.3	0.0	0.006	16.5	0.0	1.3	1	0	0	1	1	1	1	Spindle	Pole	Component	29
Fmp27_WPPW	PF10359.9	gi|336255087|ref|YP_004598194.1|	-	0.0034	16.3	0.5	0.0054	15.6	0.5	1.2	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
CENP-F_leu_zip	PF10473.9	gi|336255087|ref|YP_004598194.1|	-	0.0043	17.1	11.2	0.0081	16.2	11.2	1.4	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Pox_A_type_inc	PF04508.12	gi|336255087|ref|YP_004598194.1|	-	0.0065	16.3	0.6	0.0065	16.3	0.6	2.5	2	0	0	2	2	1	1	Viral	A-type	inclusion	protein	repeat
Rootletin	PF15035.6	gi|336255087|ref|YP_004598194.1|	-	0.0073	16.4	6.8	0.013	15.5	6.8	1.4	1	0	0	1	1	1	1	Ciliary	rootlet	component,	centrosome	cohesion
DUF1664	PF07889.12	gi|336255087|ref|YP_004598194.1|	-	0.0086	16.1	2.1	0.017	15.2	2.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
Cep57_CLD_2	PF14197.6	gi|336255087|ref|YP_004598194.1|	-	0.0097	16.0	15.1	0.02	15.0	15.1	1.5	1	0	0	1	1	1	1	Centrosome	localisation	domain	of	PPC89
TMF_TATA_bd	PF12325.8	gi|336255087|ref|YP_004598194.1|	-	0.01	16.1	10.1	0.02	15.1	10.1	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
FapA	PF03961.13	gi|336255087|ref|YP_004598194.1|	-	0.014	14.0	0.2	0.02	13.5	0.2	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Atg14	PF10186.9	gi|336255087|ref|YP_004598194.1|	-	0.014	14.5	7.6	0.027	13.5	7.6	1.4	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_23	PF13476.6	gi|336255087|ref|YP_004598194.1|	-	0.016	15.7	1.9	0.026	15.0	1.9	1.4	1	0	0	1	1	1	0	AAA	domain
DUF4094	PF13334.6	gi|336255087|ref|YP_004598194.1|	-	0.017	15.5	2.7	0.035	14.5	2.7	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
bZIP_1	PF00170.21	gi|336255087|ref|YP_004598194.1|	-	0.019	15.1	10.3	0.19	11.8	4.9	2.4	1	1	1	2	2	2	0	bZIP	transcription	factor
ZapB	PF06005.12	gi|336255087|ref|YP_004598194.1|	-	0.02	15.4	13.5	0.02	15.4	13.5	2.2	2	1	0	2	2	1	0	Cell	division	protein	ZapB
BLOC1_2	PF10046.9	gi|336255087|ref|YP_004598194.1|	-	0.023	15.0	6.5	0.059	13.7	6.5	1.7	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Syntaxin-6_N	PF09177.11	gi|336255087|ref|YP_004598194.1|	-	0.024	15.2	1.5	0.78	10.3	1.8	2.6	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
Tropomyosin_1	PF12718.7	gi|336255087|ref|YP_004598194.1|	-	0.028	14.6	10.4	0.072	13.3	10.4	1.6	1	0	0	1	1	1	0	Tropomyosin	like
DUF2884	PF11101.8	gi|336255087|ref|YP_004598194.1|	-	0.03	13.8	0.7	0.05	13.1	0.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2884)
Syntaxin_2	PF14523.6	gi|336255087|ref|YP_004598194.1|	-	0.032	14.6	1.3	0.059	13.8	1.3	1.3	1	0	0	1	1	1	0	Syntaxin-like	protein
ABC_tran_CTD	PF16326.5	gi|336255087|ref|YP_004598194.1|	-	0.04	14.2	14.9	0.4	11.0	14.8	2.6	1	1	0	1	1	1	0	ABC	transporter	C-terminal	domain
Herpes_UL25	PF01499.16	gi|336255087|ref|YP_004598194.1|	-	0.044	12.3	2.2	0.084	11.4	2.2	1.4	1	0	0	1	1	1	0	Herpesvirus	UL25	family
FAM76	PF16046.5	gi|336255087|ref|YP_004598194.1|	-	0.054	12.8	4.4	0.081	12.3	4.4	1.1	1	0	0	1	1	1	0	FAM76	protein
CENP-H	PF05837.12	gi|336255087|ref|YP_004598194.1|	-	0.072	13.5	9.8	0.16	12.4	9.8	1.5	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
TMF_DNA_bd	PF12329.8	gi|336255087|ref|YP_004598194.1|	-	0.081	12.9	13.9	0.23	11.5	13.9	1.7	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
HOOK	PF05622.12	gi|336255087|ref|YP_004598194.1|	-	0.09	10.9	6.5	0.13	10.4	6.5	1.1	1	0	0	1	1	1	0	HOOK	protein
TMPIT	PF07851.13	gi|336255087|ref|YP_004598194.1|	-	0.091	12.0	0.5	0.13	11.5	0.5	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
DUF2968	PF11180.8	gi|336255087|ref|YP_004598194.1|	-	0.11	12.2	9.9	0.19	11.3	9.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Spc7	PF08317.11	gi|336255087|ref|YP_004598194.1|	-	0.11	11.3	8.3	0.19	10.6	8.3	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
PspA_IM30	PF04012.12	gi|336255087|ref|YP_004598194.1|	-	0.12	12.0	9.3	0.043	13.4	4.1	2.5	2	0	0	2	2	2	0	PspA/IM30	family
YabA	PF06156.13	gi|336255087|ref|YP_004598194.1|	-	0.12	13.1	5.1	0.69	10.6	4.9	2.2	2	0	0	2	2	1	0	Initiation	control	protein	YabA
HemX	PF04375.14	gi|336255087|ref|YP_004598194.1|	-	0.12	11.6	2.7	0.22	10.8	2.7	1.3	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Macoilin	PF09726.9	gi|336255087|ref|YP_004598194.1|	-	0.17	10.4	10.2	0.24	9.9	10.2	1.1	1	0	0	1	1	1	0	Macoilin	family
V_ATPase_I	PF01496.19	gi|336255087|ref|YP_004598194.1|	-	0.18	9.7	0.1	0.29	9.0	0.1	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Prefoldin_2	PF01920.20	gi|336255087|ref|YP_004598194.1|	-	0.22	11.5	12.7	1.5	8.8	6.6	2.4	1	1	1	2	2	2	0	Prefoldin	subunit
ADIP	PF11559.8	gi|336255087|ref|YP_004598194.1|	-	0.23	11.5	11.9	0.84	9.7	11.9	1.8	1	1	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
DUF16	PF01519.16	gi|336255087|ref|YP_004598194.1|	-	0.24	11.9	2.9	0.49	10.9	2.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
Nup54	PF13874.6	gi|336255087|ref|YP_004598194.1|	-	0.25	11.5	3.7	0.49	10.5	3.7	1.4	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
Laminin_II	PF06009.12	gi|336255087|ref|YP_004598194.1|	-	0.39	10.7	4.4	1	9.4	4.4	1.6	1	0	0	1	1	1	0	Laminin	Domain	II
GAS	PF13851.6	gi|336255087|ref|YP_004598194.1|	-	0.41	10.0	8.1	0.91	8.8	8.1	1.5	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF724	PF05266.14	gi|336255087|ref|YP_004598194.1|	-	0.42	10.4	4.4	0.82	9.5	4.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Tmemb_cc2	PF10267.9	gi|336255087|ref|YP_004598194.1|	-	0.42	9.7	9.5	0.67	9.0	9.5	1.3	1	0	0	1	1	1	0	Predicted	transmembrane	and	coiled-coil	2	protein
DUF4795	PF16043.5	gi|336255087|ref|YP_004598194.1|	-	0.44	10.1	4.4	0.75	9.4	4.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Mod_r	PF07200.13	gi|336255087|ref|YP_004598194.1|	-	0.45	10.6	7.6	0.89	9.6	7.6	1.4	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
JIP_LZII	PF16471.5	gi|336255087|ref|YP_004598194.1|	-	0.51	10.5	10.7	2	8.7	10.7	1.9	1	1	0	1	1	1	0	JNK-interacting	protein	leucine	zipper	II
DUF3375	PF11855.8	gi|336255087|ref|YP_004598194.1|	-	0.58	9.0	15.5	1.6	7.6	15.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3375)
Nsp1_C	PF05064.13	gi|336255087|ref|YP_004598194.1|	-	0.65	9.8	3.9	1.4	8.7	3.9	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
CtIP_N	PF10482.9	gi|336255087|ref|YP_004598194.1|	-	0.71	9.9	6.6	1.6	8.8	6.6	1.5	1	0	0	1	1	1	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
UPF0242	PF06785.11	gi|336255087|ref|YP_004598194.1|	-	0.82	9.7	6.9	1.5	8.9	6.9	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
EzrA	PF06160.12	gi|336255087|ref|YP_004598194.1|	-	0.85	7.7	7.2	1.2	7.2	7.2	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
DUF3287	PF11690.8	gi|336255087|ref|YP_004598194.1|	-	0.91	9.3	2.5	1.4	8.6	2.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3287)
SHE3	PF17078.5	gi|336255087|ref|YP_004598194.1|	-	1.1	8.9	7.0	2	8.1	7.0	1.3	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
Sec34	PF04136.15	gi|336255087|ref|YP_004598194.1|	-	1.2	9.0	3.5	2.1	8.2	3.5	1.3	1	0	0	1	1	1	0	Sec34-like	family
DivIC	PF04977.15	gi|336255087|ref|YP_004598194.1|	-	1.2	8.9	13.7	0.59	9.9	5.2	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
JAKMIP_CC3	PF16034.5	gi|336255087|ref|YP_004598194.1|	-	1.3	8.9	11.9	0.041	13.8	4.7	2.1	2	0	0	2	2	1	0	JAKMIP	CC3	domain
HSBP1	PF06825.12	gi|336255087|ref|YP_004598194.1|	-	1.6	8.7	5.5	2.6	8.0	0.5	2.5	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
Cnn_1N	PF07989.11	gi|336255087|ref|YP_004598194.1|	-	1.7	8.8	8.3	3.9	7.7	8.3	1.6	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
Shugoshin_N	PF07558.11	gi|336255087|ref|YP_004598194.1|	-	2.6	8.0	5.3	3.4	7.6	0.4	2.3	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
DUF3584	PF12128.8	gi|336255087|ref|YP_004598194.1|	-	2.7	5.4	12.6	3.7	4.9	12.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
APG6_N	PF17675.1	gi|336255087|ref|YP_004598194.1|	-	2.8	8.5	16.6	0.032	14.7	8.7	1.8	2	0	0	2	2	1	0	Apg6	coiled-coil	region
ERM	PF00769.19	gi|336255087|ref|YP_004598194.1|	-	3.7	7.3	17.2	0.19	11.5	11.5	1.6	2	0	0	2	2	1	0	Ezrin/radixin/moesin	family
Prefoldin	PF02996.17	gi|336255087|ref|YP_004598194.1|	-	3.7	7.5	7.8	4.2	7.3	4.1	2.2	1	1	1	2	2	2	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|336255087|ref|YP_004598194.1|	-	3.8	7.7	14.7	2	8.6	4.6	2.5	1	1	1	2	2	2	0	Basic	region	leucine	zipper
FemAB	PF02388.16	gi|336255087|ref|YP_004598194.1|	-	4.6	6.0	4.7	6.6	5.5	4.7	1.1	1	0	0	1	1	1	0	FemAB	family
FUSC	PF04632.12	gi|336255087|ref|YP_004598194.1|	-	4.8	5.6	4.5	7.2	5.0	4.5	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
AAA_13	PF13166.6	gi|336255087|ref|YP_004598194.1|	-	6.4	5.3	5.9	9.8	4.7	5.9	1.1	1	0	0	1	1	1	0	AAA	domain
UPF0449	PF15136.6	gi|336255087|ref|YP_004598194.1|	-	6.6	7.3	8.4	1.8	9.1	4.7	2.0	2	0	0	2	2	1	0	Uncharacterised	protein	family	UPF0449
DUF4337	PF14235.6	gi|336255087|ref|YP_004598194.1|	-	6.6	6.8	7.3	3.4	7.8	3.6	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4337)
DUF2312	PF10073.9	gi|336255087|ref|YP_004598194.1|	-	7.8	6.2	11.6	0.55	9.9	3.6	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
SlyX	PF04102.12	gi|336255087|ref|YP_004598194.1|	-	8.3	7.1	8.7	37	5.0	6.7	2.8	1	1	1	2	2	2	0	SlyX
Swi5	PF07061.11	gi|336255087|ref|YP_004598194.1|	-	9.2	6.4	6.4	14	5.8	0.8	2.4	1	1	1	2	2	2	0	Swi5
UPF0058	PF01893.16	gi|336255088|ref|YP_004598195.1|	-	1.2e-34	118.5	1.0	1.3e-34	118.3	1.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
Ada3	PF10198.9	gi|336255088|ref|YP_004598195.1|	-	0.01	16.0	0.0	0.011	15.9	0.0	1.1	1	0	0	1	1	1	0	Histone	acetyltransferases	subunit	3
DUF998	PF06197.13	gi|336255089|ref|YP_004598196.1|	-	6.6e-14	51.9	37.4	8.6e-14	51.6	36.6	1.5	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF998)
Frag1	PF10277.9	gi|336255089|ref|YP_004598196.1|	-	0.027	14.0	0.5	0.065	12.8	0.5	1.8	1	1	0	1	1	1	0	Frag1/DRAM/Sfk1	family
ABC_tran	PF00005.27	gi|336255090|ref|YP_004598197.1|	-	7.7e-33	113.9	0.0	1.3e-32	113.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|336255090|ref|YP_004598197.1|	-	4.1e-09	36.5	0.7	4.1e-09	36.5	0.7	2.2	3	0	0	3	3	3	1	TOBE	domain
AAA_21	PF13304.6	gi|336255090|ref|YP_004598197.1|	-	8e-05	22.6	0.2	0.33	10.7	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|336255090|ref|YP_004598197.1|	-	0.00093	19.6	0.1	0.0021	18.5	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|336255090|ref|YP_004598197.1|	-	0.001	19.0	0.0	0.0016	18.4	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|336255090|ref|YP_004598197.1|	-	0.0018	18.5	0.0	0.004	17.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|336255090|ref|YP_004598197.1|	-	0.0081	16.4	0.6	0.026	14.8	0.6	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|336255090|ref|YP_004598197.1|	-	0.014	15.8	0.1	0.061	13.8	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.6	gi|336255090|ref|YP_004598197.1|	-	0.072	13.3	0.4	0.41	10.9	0.4	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
RsgA_GTPase	PF03193.16	gi|336255090|ref|YP_004598197.1|	-	0.073	13.0	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
T2SSE	PF00437.20	gi|336255092|ref|YP_004598199.1|	-	4.1e-50	170.4	0.0	5.9e-50	169.8	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
HEM4	PF02602.15	gi|336255092|ref|YP_004598199.1|	-	0.006	15.9	0.1	0.051	12.9	0.0	2.3	2	0	0	2	2	2	1	Uroporphyrinogen-III	synthase	HemD
AAA_29	PF13555.6	gi|336255092|ref|YP_004598199.1|	-	0.048	13.4	0.0	0.097	12.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|336255092|ref|YP_004598199.1|	-	0.13	11.8	0.0	0.23	11.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
T2SSF	PF00482.23	gi|336255093|ref|YP_004598200.1|	-	1.5e-37	128.4	15.3	2.4e-21	76.0	2.5	3.4	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2207	PF09972.9	gi|336255093|ref|YP_004598200.1|	-	0.00034	19.5	3.3	0.3	9.8	0.0	3.2	3	0	0	3	3	3	3	Predicted	membrane	protein	(DUF2207)
DUF4064	PF13273.6	gi|336255093|ref|YP_004598200.1|	-	0.18	12.1	12.9	1.7	8.9	0.2	4.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF4064)
Methyltransf_11	PF08241.12	gi|336255094|ref|YP_004598201.1|	-	4.8e-20	72.0	0.1	8.1e-20	71.3	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336255094|ref|YP_004598201.1|	-	2.4e-19	69.8	0.1	6e-19	68.6	0.1	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336255094|ref|YP_004598201.1|	-	1.3e-12	47.8	0.0	1.8e-12	47.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336255094|ref|YP_004598201.1|	-	3.8e-09	37.2	0.0	7.1e-09	36.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336255094|ref|YP_004598201.1|	-	7.2e-06	25.5	0.0	9.4e-06	25.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|336255094|ref|YP_004598201.1|	-	0.00034	20.5	0.0	0.00051	19.9	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|336255094|ref|YP_004598201.1|	-	0.0021	17.9	0.2	0.0073	16.2	0.2	1.7	1	1	0	1	1	1	1	Hypothetical	methyltransferase
NodS	PF05401.11	gi|336255094|ref|YP_004598201.1|	-	0.059	13.0	0.0	0.081	12.5	0.0	1.1	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
PSII_BNR	PF14870.6	gi|336255095|ref|YP_004598202.1|	-	0.0015	17.9	10.3	0.04	13.2	0.5	3.7	1	1	3	4	4	4	4	Photosynthesis	system	II	assembly	factor	YCF48
DUF4314	PF14192.6	gi|336255095|ref|YP_004598202.1|	-	0.14	12.1	0.8	0.52	10.3	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4314)
PAS_4	PF08448.10	gi|336255097|ref|YP_004598204.1|	-	1.2e-38	131.7	9.9	1.5e-12	47.7	0.3	3.9	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.26	gi|336255097|ref|YP_004598204.1|	-	5.2e-29	101.0	0.0	1.5e-27	96.3	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336255097|ref|YP_004598204.1|	-	3.8e-18	65.7	0.0	9.5e-08	32.2	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
GAF_2	PF13185.6	gi|336255097|ref|YP_004598204.1|	-	2.3e-12	47.4	3.0	5e-12	46.3	1.5	2.4	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|336255097|ref|YP_004598204.1|	-	2.4e-11	44.4	0.1	6.3e-11	43.0	0.1	1.8	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336255097|ref|YP_004598204.1|	-	4.7e-10	39.9	0.0	8.2e-10	39.1	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.25	gi|336255097|ref|YP_004598204.1|	-	1.9e-09	37.4	1.5	3.2e-08	33.5	0.1	3.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|336255097|ref|YP_004598204.1|	-	1.8e-05	24.7	0.1	0.19	11.8	0.0	4.0	3	1	1	4	4	4	2	PAS	fold
HATPase_c_5	PF14501.6	gi|336255097|ref|YP_004598204.1|	-	4.2e-05	23.4	0.0	0.00011	22.1	0.0	1.7	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336255097|ref|YP_004598204.1|	-	0.00013	21.9	0.5	0.0004	20.4	0.1	2.0	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_3	PF08447.12	gi|336255097|ref|YP_004598204.1|	-	0.011	16.0	2.0	1.5	9.1	0.0	4.1	5	0	0	5	5	5	0	PAS	fold
HATPase_c_3	PF13589.6	gi|336255097|ref|YP_004598204.1|	-	0.026	14.3	0.0	0.058	13.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Acetyltransf_1	PF00583.25	gi|336255100|ref|YP_004598207.1|	-	8.9e-08	32.4	0.0	1.8e-07	31.4	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336255100|ref|YP_004598207.1|	-	0.013	15.4	0.0	0.021	14.8	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336255100|ref|YP_004598207.1|	-	0.03	14.5	0.0	0.055	13.6	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_7	PF13508.7	gi|336255100|ref|YP_004598207.1|	-	0.17	12.4	0.0	0.27	11.7	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PQQ_2	PF13360.6	gi|336255102|ref|YP_004598209.1|	-	2.3e-20	73.2	11.0	3.4e-10	39.9	4.6	2.9	1	1	0	2	2	2	2	PQQ-like	domain
PQQ	PF01011.21	gi|336255102|ref|YP_004598209.1|	-	3.1e-07	30.0	7.2	1.6	8.8	0.1	6.2	6	0	0	6	6	6	4	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|336255102|ref|YP_004598209.1|	-	0.00039	20.8	29.4	0.08	13.5	0.4	7.8	8	1	0	8	8	8	2	PQQ-like	domain
XPG_I	PF00867.18	gi|336255103|ref|YP_004598210.1|	-	9.2e-22	77.2	0.0	1.8e-21	76.3	0.0	1.5	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|336255103|ref|YP_004598210.1|	-	1.3e-10	41.6	0.0	2.3e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|336255103|ref|YP_004598210.1|	-	4.1e-05	24.1	0.0	0.00011	22.7	0.0	1.8	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
5_3_exonuc_N	PF02739.16	gi|336255103|ref|YP_004598210.1|	-	0.0086	16.0	0.0	0.032	14.1	0.0	1.9	2	0	0	2	2	2	1	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
Chorismate_synt	PF01264.21	gi|336255103|ref|YP_004598210.1|	-	0.19	10.4	1.0	0.24	10.1	0.2	1.5	2	0	0	2	2	2	0	Chorismate	synthase
SlyX	PF04102.12	gi|336255103|ref|YP_004598210.1|	-	2.7	8.7	6.0	2	9.1	0.2	2.7	2	1	1	3	3	3	0	SlyX
ADH_zinc_N	PF00107.26	gi|336255104|ref|YP_004598211.1|	-	9.3e-25	87.1	0.1	1.9e-24	86.1	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|336255104|ref|YP_004598211.1|	-	1.5e-14	55.1	0.0	4.5e-14	53.6	0.0	1.8	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|336255104|ref|YP_004598211.1|	-	3.7e-10	39.6	0.0	1.7e-09	37.5	0.0	2.0	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
AlaDh_PNT_C	PF01262.21	gi|336255104|ref|YP_004598211.1|	-	0.012	14.9	0.1	0.023	14.0	0.1	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UBA	PF00627.31	gi|336255104|ref|YP_004598211.1|	-	0.093	12.7	0.3	0.3	11.0	0.1	2.0	2	0	0	2	2	2	0	UBA/TS-N	domain
Pyr_redox_2	PF07992.14	gi|336255105|ref|YP_004598212.1|	-	1.5e-30	106.5	0.3	1.9e-30	106.1	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336255105|ref|YP_004598212.1|	-	3.9e-12	46.6	1.0	8.6e-09	35.8	0.1	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|336255105|ref|YP_004598212.1|	-	8.9e-05	22.8	0.2	0.0011	19.3	0.0	2.4	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
DAO	PF01266.24	gi|336255105|ref|YP_004598212.1|	-	0.00056	19.6	7.7	0.73	9.4	0.1	3.6	2	1	2	4	4	4	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|336255105|ref|YP_004598212.1|	-	0.00061	19.8	4.1	4.4	7.3	0.2	4.0	2	2	2	4	4	4	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|336255105|ref|YP_004598212.1|	-	0.0093	16.2	0.2	1.9	8.8	0.0	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
TrkA_N	PF02254.18	gi|336255105|ref|YP_004598212.1|	-	0.072	13.4	0.3	0.62	10.3	0.1	2.3	2	0	0	2	2	2	0	TrkA-N	domain
PapC_C	PF13953.6	gi|336255105|ref|YP_004598212.1|	-	0.091	12.6	0.0	0.31	10.9	0.0	2.0	1	0	0	1	1	1	0	PapC	C-terminal	domain
Thi4	PF01946.17	gi|336255105|ref|YP_004598212.1|	-	0.11	11.7	0.2	2.2	7.5	0.0	2.2	2	0	0	2	2	2	0	Thi4	family
Complex1_49kDa	PF00346.19	gi|336255107|ref|YP_004598214.1|	-	4.3e-84	281.8	0.1	1e-82	277.3	0.1	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|336255107|ref|YP_004598214.1|	-	5.9e-36	123.8	0.1	1.1e-35	122.8	0.1	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Autoind_bind	PF03472.15	gi|336255107|ref|YP_004598214.1|	-	0.045	13.2	0.0	0.094	12.2	0.0	1.6	1	0	0	1	1	1	0	Autoinducer	binding	domain
PALP	PF00291.25	gi|336255108|ref|YP_004598215.1|	-	3.9e-45	154.5	0.8	4.7e-45	154.3	0.8	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Ni_hydr_CYTB	PF01292.20	gi|336255111|ref|YP_004598218.1|	-	3.2e-19	69.2	14.4	3.2e-19	69.2	14.4	2.0	2	1	0	2	2	2	1	Prokaryotic	cytochrome	b561
PepSY_TM	PF03929.16	gi|336255111|ref|YP_004598218.1|	-	0.0056	16.4	2.1	0.0056	16.4	2.1	3.1	3	0	0	3	3	3	1	PepSY-associated	TM	region
DUF2371	PF10177.9	gi|336255111|ref|YP_004598218.1|	-	0.07	13.3	0.0	0.26	11.4	0.0	1.9	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
DctQ	PF04290.12	gi|336255111|ref|YP_004598218.1|	-	0.074	13.0	0.2	0.074	13.0	0.2	3.2	3	0	0	3	3	3	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
SIT	PF15330.6	gi|336255111|ref|YP_004598218.1|	-	0.31	11.5	1.8	28	5.2	0.0	2.4	2	0	0	2	2	2	0	SHP2-interacting	transmembrane	adaptor	protein,	SIT
COX14	PF14880.6	gi|336255111|ref|YP_004598218.1|	-	8.2	6.4	8.5	5.4	6.9	0.2	3.4	3	0	0	3	3	3	0	Cytochrome	oxidase	c	assembly
DUF4227	PF14004.6	gi|336255111|ref|YP_004598218.1|	-	9	6.4	9.0	9.9	6.2	0.9	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4227)
Fer4_11	PF13247.6	gi|336255113|ref|YP_004598220.1|	-	2.5e-16	59.6	12.1	2.5e-16	59.6	12.1	2.1	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336255113|ref|YP_004598220.1|	-	1.8e-15	57.2	24.9	1.8e-07	31.6	7.3	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336255113|ref|YP_004598220.1|	-	4.3e-13	49.2	24.0	5e-06	26.6	8.3	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336255113|ref|YP_004598220.1|	-	6.2e-11	41.6	31.9	8.2e-06	25.4	1.0	5.3	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|336255113|ref|YP_004598220.1|	-	3.7e-08	33.4	30.6	3.7e-05	23.7	9.7	3.2	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|336255113|ref|YP_004598220.1|	-	2.4e-07	30.7	31.7	0.056	14.0	2.3	4.4	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|336255113|ref|YP_004598220.1|	-	2.5e-07	30.4	32.8	0.0024	17.9	0.8	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336255113|ref|YP_004598220.1|	-	4.2e-07	30.8	20.1	0.088	13.8	0.7	4.6	3	1	1	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|336255113|ref|YP_004598220.1|	-	6.7e-07	29.1	38.0	0.00086	19.3	1.2	5.1	4	2	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336255113|ref|YP_004598220.1|	-	8.6e-07	29.0	26.4	1.3e-05	25.2	7.8	3.5	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336255113|ref|YP_004598220.1|	-	4.8e-06	26.9	21.6	0.00052	20.4	4.5	2.8	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|336255113|ref|YP_004598220.1|	-	0.00027	21.7	41.8	0.049	14.6	5.1	4.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336255113|ref|YP_004598220.1|	-	0.0053	17.3	28.2	0.059	13.9	0.5	4.5	2	2	3	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|336255113|ref|YP_004598220.1|	-	0.039	14.5	0.4	0.039	14.5	0.4	3.9	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|336255113|ref|YP_004598220.1|	-	0.78	10.5	16.2	4.9	8.0	0.3	3.7	2	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|336255113|ref|YP_004598220.1|	-	3	8.1	22.7	3.9	7.7	2.1	3.5	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.22	gi|336255114|ref|YP_004598221.1|	-	7.4e-52	176.7	2.0	1.2e-51	176.0	2.0	1.4	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|336255114|ref|YP_004598221.1|	-	1.8e-19	69.8	0.1	1.1e-18	67.3	0.1	2.3	2	0	0	2	2	2	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|336255114|ref|YP_004598221.1|	-	1.1e-12	47.8	0.2	2e-12	46.9	0.2	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|336255114|ref|YP_004598221.1|	-	0.0034	17.2	1.9	0.0071	16.1	1.9	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Rieske_3	PF18465.1	gi|336255114|ref|YP_004598221.1|	-	0.8	10.0	5.8	1.3	9.3	0.7	3.3	2	2	1	3	3	3	0	Rieske	3Fe-4S
FlpD	PF02662.16	gi|336255115|ref|YP_004598222.1|	-	8.2e-26	90.4	0.0	3.8e-25	88.3	0.0	2.2	2	0	0	2	2	2	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Fer4_7	PF12838.7	gi|336255115|ref|YP_004598222.1|	-	2.5e-17	63.2	25.1	1.4e-07	32.0	9.3	5.6	5	0	0	5	5	5	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336255115|ref|YP_004598222.1|	-	1.9e-14	52.8	42.9	5.8e-06	25.9	1.1	7.3	7	0	0	7	7	7	5	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336255115|ref|YP_004598222.1|	-	2.9e-12	47.3	25.8	0.0013	19.6	0.5	6.7	6	0	0	6	6	6	3	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|336255115|ref|YP_004598222.1|	-	1.7e-11	44.1	33.2	2.6e-06	27.5	9.0	5.0	5	0	0	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|336255115|ref|YP_004598222.1|	-	2.1e-07	30.9	34.5	4.1e-05	23.6	6.4	5.3	3	2	1	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336255115|ref|YP_004598222.1|	-	3.3e-07	30.7	25.7	0.078	13.4	1.6	5.8	4	1	0	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336255115|ref|YP_004598222.1|	-	3.9e-07	30.1	41.0	4.4e-06	26.7	10.0	4.8	3	2	2	5	5	5	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336255115|ref|YP_004598222.1|	-	4.9e-07	29.5	51.2	1.9e-05	24.5	0.8	7.0	7	0	0	7	7	6	4	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336255115|ref|YP_004598222.1|	-	2.2e-06	28.1	25.9	0.035	14.7	0.1	6.0	4	1	2	6	6	6	4	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336255115|ref|YP_004598222.1|	-	0.00016	21.6	2.7	0.00016	21.6	2.7	6.8	7	0	0	7	7	6	4	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336255115|ref|YP_004598222.1|	-	0.0057	17.1	3.5	0.0057	17.1	3.5	6.4	7	0	0	7	7	6	3	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336255115|ref|YP_004598222.1|	-	0.022	15.0	25.9	0.027	14.7	1.4	4.4	4	1	0	4	4	4	0	4Fe-4S	dicluster	domain
Nitrate_red_del	PF02613.15	gi|336255116|ref|YP_004598223.1|	-	5.6e-27	94.4	0.1	1e-26	93.6	0.1	1.4	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Phage_holin_3_6	PF07332.11	gi|336255119|ref|YP_004598226.1|	-	0.057	13.5	4.3	0.076	13.1	4.3	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DPM3	PF08285.11	gi|336255119|ref|YP_004598226.1|	-	0.15	12.3	1.5	0.22	11.8	1.5	1.2	1	0	0	1	1	1	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
OppC_N	PF12911.7	gi|336255119|ref|YP_004598226.1|	-	0.41	10.6	9.4	0.76	9.8	0.3	2.2	1	1	1	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
AFOR_C	PF01314.18	gi|336255121|ref|YP_004598228.1|	-	3.5e-99	332.4	0.0	4.9e-99	331.9	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|336255121|ref|YP_004598228.1|	-	3.6e-64	216.3	0.1	5e-64	215.8	0.1	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Glyco_transf_4	PF13439.6	gi|336255122|ref|YP_004598229.1|	-	5.2e-19	68.9	1.3	8.4e-19	68.2	0.3	1.8	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336255122|ref|YP_004598229.1|	-	3.4e-17	63.3	5.4	3.4e-17	63.3	5.4	2.7	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|336255122|ref|YP_004598229.1|	-	1.3e-11	44.3	0.0	2e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336255122|ref|YP_004598229.1|	-	1.1e-10	42.1	0.0	5.8e-10	39.7	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|336255122|ref|YP_004598229.1|	-	0.00059	19.9	0.0	0.0016	18.5	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Tctex-1	PF03645.13	gi|336255122|ref|YP_004598229.1|	-	0.16	12.2	0.0	0.28	11.4	0.0	1.3	1	0	0	1	1	1	0	Tctex-1	family
Peptidase_S9	PF00326.21	gi|336255124|ref|YP_004598231.1|	-	2e-45	154.9	0.0	3.2e-45	154.2	0.0	1.4	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|336255124|ref|YP_004598231.1|	-	4.9e-13	49.1	0.1	1.4e-12	47.7	0.1	1.6	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.18	gi|336255124|ref|YP_004598231.1|	-	2.2e-11	43.9	0.0	1.8e-08	34.3	0.1	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_1	PF00561.20	gi|336255124|ref|YP_004598231.1|	-	6.6e-11	42.3	0.1	2.2e-05	24.2	0.1	2.2	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336255124|ref|YP_004598231.1|	-	2.2e-08	33.6	0.2	0.00085	18.7	0.1	2.5	2	1	1	3	3	3	2	Serine	aminopeptidase,	S33
PD40	PF07676.12	gi|336255124|ref|YP_004598231.1|	-	2.9e-06	27.0	5.5	0.0059	16.5	0.0	5.5	5	0	0	5	5	5	1	WD40-like	Beta	Propeller	Repeat
Peptidase_S9_N	PF02897.15	gi|336255124|ref|YP_004598231.1|	-	0.00014	20.8	0.0	0.00023	20.1	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
AXE1	PF05448.12	gi|336255124|ref|YP_004598231.1|	-	0.00027	19.7	0.0	0.0097	14.6	0.0	2.1	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_3	PF07859.13	gi|336255124|ref|YP_004598231.1|	-	0.00091	19.1	0.0	0.032	14.1	0.0	2.2	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
BAAT_C	PF08840.11	gi|336255124|ref|YP_004598231.1|	-	0.00096	19.1	0.0	0.016	15.2	0.0	2.1	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
PepSY_2	PF13670.6	gi|336255124|ref|YP_004598231.1|	-	0.0017	18.3	0.1	0.22	11.5	0.0	2.6	2	0	0	2	2	2	1	Peptidase	propeptide	and	YPEB	domain
Abhydrolase_2	PF02230.16	gi|336255124|ref|YP_004598231.1|	-	0.012	15.5	0.0	3.6	7.3	0.0	2.2	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Esterase	PF00756.20	gi|336255124|ref|YP_004598231.1|	-	0.042	13.5	0.0	0.19	11.3	0.0	2.1	2	0	0	2	2	2	0	Putative	esterase
Abhydrolase_4	PF08386.10	gi|336255124|ref|YP_004598231.1|	-	0.046	13.8	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	TAP-like	protein
DUF829	PF05705.14	gi|336255124|ref|YP_004598231.1|	-	0.22	11.4	0.0	0.39	10.6	0.0	1.3	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF829)
ABC_tran	PF00005.27	gi|336255125|ref|YP_004598232.1|	-	1.9e-27	96.4	0.0	3.2e-27	95.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336255125|ref|YP_004598232.1|	-	1.5e-11	44.6	0.0	7.5e-08	32.5	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|336255125|ref|YP_004598232.1|	-	0.0014	18.4	0.0	0.003	17.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255125|ref|YP_004598232.1|	-	0.012	15.5	0.0	0.021	14.7	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|336255125|ref|YP_004598232.1|	-	0.014	15.9	0.0	0.025	15.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|336255125|ref|YP_004598232.1|	-	0.035	14.5	0.0	0.097	13.1	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336255125|ref|YP_004598232.1|	-	0.082	12.7	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|336255125|ref|YP_004598232.1|	-	0.18	11.4	0.0	1.2	8.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|336255126|ref|YP_004598233.1|	-	2.8e-40	138.4	14.5	2.5e-39	135.3	14.5	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|336255126|ref|YP_004598233.1|	-	1.2e-11	44.9	3.6	1.2e-11	44.9	3.6	1.4	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|336255126|ref|YP_004598233.1|	-	1.3e-10	41.2	6.1	3.9e-10	39.6	6.2	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336255126|ref|YP_004598233.1|	-	8e-09	35.0	12.0	8e-09	35.0	12.0	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336255126|ref|YP_004598233.1|	-	1.3e-05	24.7	13.6	2.3e-05	23.9	13.6	1.4	1	0	0	1	1	1	1	ABC-2	type	transporter
DUF872	PF05915.12	gi|336255126|ref|YP_004598233.1|	-	0.22	11.7	2.7	0.52	10.5	2.7	1.6	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF4293	PF14126.6	gi|336255126|ref|YP_004598233.1|	-	0.97	9.7	4.1	2	8.6	0.3	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4293)
Nitrate_red_del	PF02613.15	gi|336255130|ref|YP_004598237.1|	-	2e-28	99.1	0.1	2.7e-28	98.7	0.1	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
FlpD	PF02662.16	gi|336255131|ref|YP_004598238.1|	-	5.2e-25	87.8	0.0	1.6e-24	86.2	0.0	1.9	1	0	0	1	1	1	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Fer4	PF00037.27	gi|336255131|ref|YP_004598238.1|	-	3.1e-13	48.9	51.2	1.3e-05	24.7	2.4	7.7	8	0	0	8	8	8	6	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|336255131|ref|YP_004598238.1|	-	3.5e-13	49.9	44.0	2e-07	31.5	11.6	6.5	5	3	3	8	8	7	6	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|336255131|ref|YP_004598238.1|	-	7.1e-12	46.1	30.2	0.0003	21.6	0.3	7.4	8	0	0	8	8	7	4	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|336255131|ref|YP_004598238.1|	-	2.7e-11	43.5	42.0	3.6e-06	27.0	10.4	5.5	7	0	0	7	7	6	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|336255131|ref|YP_004598238.1|	-	6.5e-09	35.8	32.3	0.00022	21.3	8.0	5.3	4	1	1	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336255131|ref|YP_004598238.1|	-	3.6e-07	30.5	21.8	0.0053	17.2	0.4	5.9	5	0	0	5	5	5	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336255131|ref|YP_004598238.1|	-	4.1e-07	30.0	45.0	2e-05	24.6	11.3	5.2	5	1	0	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336255131|ref|YP_004598238.1|	-	2.2e-06	27.5	11.6	1.2e-05	25.2	2.2	7.9	8	0	0	8	8	7	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|336255131|ref|YP_004598238.1|	-	0.00056	19.8	3.3	0.00056	19.8	3.3	7.7	9	0	0	9	9	8	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336255131|ref|YP_004598238.1|	-	0.0044	17.5	33.6	0.016	15.7	0.3	5.9	5	1	1	6	6	6	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|336255131|ref|YP_004598238.1|	-	0.0044	17.4	4.7	0.0044	17.4	4.7	6.4	8	0	0	8	8	4	3	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336255131|ref|YP_004598238.1|	-	0.014	15.6	21.3	0.11	12.7	3.8	4.4	5	0	0	5	5	4	0	4Fe-4S	dicluster	domain
YidD	PF01809.18	gi|336255131|ref|YP_004598238.1|	-	0.067	13.1	0.6	0.33	10.8	0.3	2.1	2	0	0	2	2	2	0	Putative	membrane	protein	insertion	efficiency	factor
Fer4_11	PF13247.6	gi|336255131|ref|YP_004598238.1|	-	0.38	10.9	19.2	0.34	11.1	1.8	3.7	4	0	0	4	4	3	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.22	gi|336255132|ref|YP_004598239.1|	-	1.7e-48	165.7	2.7	8.7e-48	163.3	2.7	1.9	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|336255132|ref|YP_004598239.1|	-	2.9e-16	59.5	0.0	8.5e-16	58.0	0.0	1.8	2	0	0	2	2	2	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|336255132|ref|YP_004598239.1|	-	2.2e-10	40.4	0.2	4.5e-10	39.4	0.2	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|336255132|ref|YP_004598239.1|	-	0.069	13.0	1.9	0.17	11.8	1.9	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Rieske_3	PF18465.1	gi|336255132|ref|YP_004598239.1|	-	0.083	13.2	1.3	0.9	9.8	0.2	2.8	2	0	0	2	2	2	0	Rieske	3Fe-4S
Prothymosin	PF03247.14	gi|336255132|ref|YP_004598239.1|	-	0.44	11.0	13.9	1.8	9.1	13.9	2.0	1	0	0	1	1	1	0	Prothymosin/parathymosin	family
Fer4_11	PF13247.6	gi|336255133|ref|YP_004598240.1|	-	2.4e-18	66.1	11.4	2.4e-18	66.1	11.4	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336255133|ref|YP_004598240.1|	-	1.6e-15	57.4	22.1	9.4e-08	32.5	6.5	2.4	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336255133|ref|YP_004598240.1|	-	7.4e-13	48.4	55.2	3.1e-06	27.3	8.8	3.2	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336255133|ref|YP_004598240.1|	-	1.6e-08	34.0	40.4	2.8e-05	23.7	1.6	5.5	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|336255133|ref|YP_004598240.1|	-	4e-08	33.3	26.1	5.5e-06	26.4	8.2	3.7	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336255133|ref|YP_004598240.1|	-	8.3e-08	32.0	39.0	0.00036	20.5	1.1	5.4	4	2	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|336255133|ref|YP_004598240.1|	-	7.6e-07	29.2	30.1	0.00077	19.5	9.0	3.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336255133|ref|YP_004598240.1|	-	7.7e-07	28.8	33.2	0.0038	17.2	1.1	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336255133|ref|YP_004598240.1|	-	9e-06	26.5	22.2	0.017	16.0	1.0	4.6	3	1	0	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|336255133|ref|YP_004598240.1|	-	1.6e-05	25.2	22.0	0.00097	19.5	6.0	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|336255133|ref|YP_004598240.1|	-	0.00026	21.3	31.2	0.048	14.2	2.2	4.5	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|336255133|ref|YP_004598240.1|	-	0.007	17.2	41.9	0.056	14.4	5.9	4.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336255133|ref|YP_004598240.1|	-	0.058	13.9	27.8	0.069	13.7	8.5	4.0	1	1	4	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|336255133|ref|YP_004598240.1|	-	0.13	12.8	0.5	0.13	12.8	0.5	4.5	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|336255133|ref|YP_004598240.1|	-	2	8.7	20.3	7.3	6.8	1.7	3.3	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|336255133|ref|YP_004598240.1|	-	3.6	8.4	22.5	3.8	8.3	0.5	4.3	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
SPX	PF03105.19	gi|336255134|ref|YP_004598241.1|	-	0.011	15.6	1.4	0.012	15.5	1.4	1.3	1	0	0	1	1	1	0	SPX	domain
Ni_hydr_CYTB	PF01292.20	gi|336255135|ref|YP_004598242.1|	-	9.9e-20	70.9	16.0	2e-19	69.9	11.9	2.0	2	0	0	2	2	2	1	Prokaryotic	cytochrome	b561
DUF3094	PF11293.8	gi|336255135|ref|YP_004598242.1|	-	0.03	14.0	0.0	0.094	12.5	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3094)
PepSY_TM	PF03929.16	gi|336255135|ref|YP_004598242.1|	-	3.7	7.1	20.8	97	2.5	18.0	3.5	3	1	0	3	3	3	0	PepSY-associated	TM	region
Metal_resist	PF13801.6	gi|336255136|ref|YP_004598243.1|	-	2.7	8.2	4.4	1.8	8.8	2.8	1.5	1	1	1	2	2	2	0	Heavy-metal	resistance
YjbE	PF11106.8	gi|336255136|ref|YP_004598243.1|	-	4.4	7.6	9.1	0.18	12.0	3.5	1.5	2	0	0	2	2	2	0	Exopolysaccharide	production	protein	YjbE
Fe-ADH_2	PF13685.6	gi|336255137|ref|YP_004598244.1|	-	2.5e-61	207.6	2.0	3.1e-61	207.3	2.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|336255137|ref|YP_004598244.1|	-	2.2e-21	76.1	6.2	7.1e-21	74.4	6.2	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|336255137|ref|YP_004598244.1|	-	1.4e-07	30.9	0.1	3.8e-07	29.5	0.1	1.6	1	1	0	1	1	1	1	3-dehydroquinate	synthase
adh_short_C2	PF13561.6	gi|336255138|ref|YP_004598245.1|	-	5.4e-63	212.7	2.2	6.5e-63	212.4	2.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336255138|ref|YP_004598245.1|	-	7.6e-49	165.8	0.6	1e-48	165.4	0.6	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336255138|ref|YP_004598245.1|	-	3e-15	56.6	0.7	4e-15	56.2	0.7	1.1	1	0	0	1	1	1	1	KR	domain
2-Hacid_dh_C	PF02826.19	gi|336255138|ref|YP_004598245.1|	-	0.0067	15.8	0.1	0.01	15.2	0.1	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336255138|ref|YP_004598245.1|	-	0.0072	16.9	2.3	0.049	14.2	1.3	2.6	1	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|336255138|ref|YP_004598245.1|	-	0.025	14.8	0.2	0.039	14.2	0.2	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
NmrA	PF05368.13	gi|336255138|ref|YP_004598245.1|	-	0.027	14.0	0.7	0.038	13.6	0.7	1.2	1	0	0	1	1	1	0	NmrA-like	family
RmlD_sub_bind	PF04321.17	gi|336255138|ref|YP_004598245.1|	-	0.071	12.2	0.2	0.1	11.7	0.2	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Pam16	PF03656.13	gi|336255138|ref|YP_004598245.1|	-	0.11	12.5	1.4	3.4	7.7	0.3	2.3	2	0	0	2	2	2	0	Pam16
THF_DHG_CYH_C	PF02882.19	gi|336255138|ref|YP_004598245.1|	-	0.14	11.5	0.1	0.73	9.1	0.0	1.9	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3HCDH_N	PF02737.18	gi|336255138|ref|YP_004598245.1|	-	0.15	12.0	0.5	0.25	11.2	0.5	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
MatE	PF01554.18	gi|336255139|ref|YP_004598246.1|	-	3.3e-44	150.4	25.4	4.7e-25	88.1	7.4	2.7	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|336255139|ref|YP_004598246.1|	-	2.3e-10	40.7	4.6	2.3e-10	40.7	4.6	4.3	4	1	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336255139|ref|YP_004598246.1|	-	2.7e-10	39.4	6.9	1.5e-08	33.7	2.0	2.8	2	1	0	2	2	2	2	Lipid	II	flippase	MurJ
Regulator_TrmB	PF11495.8	gi|336255140|ref|YP_004598247.1|	-	0.11	11.6	0.2	0.49	9.5	0.1	1.8	2	0	0	2	2	2	0	Archaeal	transcriptional	regulator	TrmB
MR_MLE_C	PF13378.6	gi|336255141|ref|YP_004598248.1|	-	1e-60	205.1	1.4	1.4e-60	204.6	1.4	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336255141|ref|YP_004598248.1|	-	5.5e-16	58.8	0.0	1e-15	58.0	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Aldedh	PF00171.22	gi|336255142|ref|YP_004598249.1|	-	5.7e-164	546.0	2.1	6.5e-164	545.8	2.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
FAA_hydrolase	PF01557.18	gi|336255143|ref|YP_004598250.1|	-	9.1e-24	84.3	0.1	2.1e-22	79.9	0.1	2.4	1	1	1	2	2	2	1	Fumarylacetoacetate	(FAA)	hydrolase	family
SBP_bac_5	PF00496.22	gi|336255144|ref|YP_004598251.1|	-	3.2e-25	88.9	1.4	2.2e-24	86.1	1.4	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336255144|ref|YP_004598251.1|	-	1.2	9.1	7.0	1.8	8.5	7.0	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
GFO_IDH_MocA	PF01408.22	gi|336255145|ref|YP_004598252.1|	-	4.4e-20	72.7	0.3	9.9e-20	71.6	0.3	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336255145|ref|YP_004598252.1|	-	0.00011	22.2	0.0	0.00028	20.9	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.24	gi|336255145|ref|YP_004598252.1|	-	0.006	17.0	0.1	0.012	16.1	0.1	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|336255145|ref|YP_004598252.1|	-	0.16	12.1	0.1	0.4	10.7	0.0	1.7	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
ABC_tran	PF00005.27	gi|336255146|ref|YP_004598253.1|	-	1.8e-23	83.5	0.0	2.6e-23	83.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336255146|ref|YP_004598253.1|	-	6.3e-18	65.1	0.1	1.2e-17	64.1	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336255146|ref|YP_004598253.1|	-	3.2e-09	37.0	0.2	5.8e-07	29.6	0.2	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336255146|ref|YP_004598253.1|	-	1.4e-05	24.6	0.3	0.032	13.7	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336255146|ref|YP_004598253.1|	-	0.00013	22.3	0.2	0.29	11.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|336255146|ref|YP_004598253.1|	-	0.00093	18.9	0.1	0.002	17.8	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336255146|ref|YP_004598253.1|	-	0.026	14.9	0.0	0.058	13.8	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
TniB	PF05621.11	gi|336255146|ref|YP_004598253.1|	-	0.032	13.7	0.1	1.1	8.6	0.0	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_25	PF13481.6	gi|336255146|ref|YP_004598253.1|	-	0.033	13.8	0.0	0.22	11.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|336255146|ref|YP_004598253.1|	-	0.049	13.4	0.0	0.56	9.9	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF87	PF01935.17	gi|336255146|ref|YP_004598253.1|	-	0.073	13.2	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
NACHT	PF05729.12	gi|336255146|ref|YP_004598253.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
ATPase	PF06745.13	gi|336255146|ref|YP_004598253.1|	-	0.23	10.8	0.0	1.7	7.9	0.0	2.0	2	0	0	2	2	2	0	KaiC
ABC_tran	PF00005.27	gi|336255147|ref|YP_004598254.1|	-	3.8e-28	98.7	0.0	5.5e-28	98.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336255147|ref|YP_004598254.1|	-	1.1e-15	57.9	0.5	2.2e-15	56.9	0.5	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336255147|ref|YP_004598254.1|	-	7.4e-05	22.7	2.0	0.072	12.9	0.2	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336255147|ref|YP_004598254.1|	-	0.00036	20.8	0.2	0.0019	18.5	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336255147|ref|YP_004598254.1|	-	0.017	14.9	0.2	0.034	13.9	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255147|ref|YP_004598254.1|	-	0.084	12.8	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_24	PF13479.6	gi|336255147|ref|YP_004598254.1|	-	0.11	12.3	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|336255147|ref|YP_004598254.1|	-	0.11	12.5	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NB-ARC	PF00931.22	gi|336255147|ref|YP_004598254.1|	-	0.12	11.5	0.0	0.18	11.0	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Sensor	PF13796.6	gi|336255149|ref|YP_004598256.1|	-	0.088	12.8	6.9	0.11	12.5	6.9	1.1	1	0	0	1	1	1	0	Putative	sensor
DUF3561	PF12084.8	gi|336255149|ref|YP_004598256.1|	-	0.3	11.1	8.0	3.7	7.6	3.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3561)
DUF2207	PF09972.9	gi|336255149|ref|YP_004598256.1|	-	0.35	9.6	5.8	0.4	9.4	5.8	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Glyco_hydro_67M	PF07488.12	gi|336255150|ref|YP_004598257.1|	-	4.9e-134	446.5	0.0	6.1e-134	446.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	middle	domain
Glyco_hydro_67C	PF07477.12	gi|336255150|ref|YP_004598257.1|	-	1.2e-83	280.1	0.0	1.8e-83	279.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	C-terminus
Glyco_hydro_67N	PF03648.14	gi|336255150|ref|YP_004598257.1|	-	1.1e-26	93.5	0.0	1.7e-26	92.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	N-terminus
DUF4838	PF16126.5	gi|336255150|ref|YP_004598257.1|	-	0.19	11.1	0.0	0.31	10.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4838)
Glyco_hydro_10	PF00331.20	gi|336255151|ref|YP_004598258.1|	-	2.2e-35	122.3	0.7	2.2e-35	122.3	0.7	1.5	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	10
CarboxypepD_reg	PF13620.6	gi|336255151|ref|YP_004598258.1|	-	0.00052	20.2	1.1	0.62	10.4	0.4	2.5	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
Big_3	PF07523.12	gi|336255151|ref|YP_004598258.1|	-	0.0018	18.5	3.8	0.13	12.6	0.9	2.8	2	0	0	2	2	2	2	Bacterial	Ig-like	domain	(group	3)
Invasin_D3	PF09134.10	gi|336255151|ref|YP_004598258.1|	-	0.0099	16.2	1.6	0.3	11.4	0.0	2.6	2	0	0	2	2	2	1	Invasin,	domain	3
Big_1	PF02369.16	gi|336255151|ref|YP_004598258.1|	-	0.15	12.1	0.0	0.15	12.1	0.0	3.0	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	1)
bMG6	PF17962.1	gi|336255151|ref|YP_004598258.1|	-	0.17	12.1	0.1	0.17	12.1	0.1	2.7	3	0	0	3	3	3	0	Bacterial	macroglobulin	domain	6
TipAS	PF07739.13	gi|336255151|ref|YP_004598258.1|	-	4.8	7.8	7.3	1.8	9.1	0.3	2.8	3	0	0	3	3	3	0	TipAS	antibiotic-recognition	domain
Cytomega_UL20A	PF05984.12	gi|336255151|ref|YP_004598258.1|	-	5.8	7.3	9.9	5.2	7.4	7.2	2.4	2	0	0	2	2	2	0	Cytomegalovirus	UL20A	protein
Glyco_hydro_10	PF00331.20	gi|336255152|ref|YP_004598259.1|	-	1.3e-99	333.3	0.0	1.5e-99	333.2	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase	PF00150.18	gi|336255152|ref|YP_004598259.1|	-	0.0023	17.4	0.6	0.17	11.3	0.4	2.4	2	1	0	2	2	2	1	Cellulase	(glycosyl	hydrolase	family	5)
AP_endonuc_2	PF01261.24	gi|336255152|ref|YP_004598259.1|	-	0.0051	16.3	0.0	0.013	14.9	0.0	1.7	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Choline_sulf_C	PF12411.8	gi|336255152|ref|YP_004598259.1|	-	0.064	13.1	0.4	0.16	11.8	0.4	1.7	1	0	0	1	1	1	0	Choline	sulfatase	enzyme	C	terminal
LapA_dom	PF06305.11	gi|336255153|ref|YP_004598260.1|	-	0.0044	16.8	0.1	0.016	15.0	0.0	1.8	2	0	0	2	2	2	1	Lipopolysaccharide	assembly	protein	A	domain
DUF202	PF02656.15	gi|336255153|ref|YP_004598260.1|	-	0.22	12.0	2.6	0.56	10.7	2.6	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Bac_luciferase	PF00296.20	gi|336255154|ref|YP_004598261.1|	-	4.5e-66	223.4	5.5	5.4e-66	223.1	5.5	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Radical_SAM	PF04055.21	gi|336255154|ref|YP_004598261.1|	-	0.12	12.8	1.2	0.74	10.2	0.7	2.4	2	2	0	2	2	2	0	Radical	SAM	superfamily
UxaC	PF02614.14	gi|336255155|ref|YP_004598262.1|	-	2.4e-146	488.2	0.0	2.8e-146	488.1	0.0	1.0	1	0	0	1	1	1	1	Glucuronate	isomerase
Glyco_hydro_11	PF00457.17	gi|336255156|ref|YP_004598263.1|	-	7.2e-76	253.8	13.6	7.2e-76	253.8	13.6	2.3	2	1	0	2	2	2	1	Glycosyl	hydrolases	family	11
RicinB_lectin_2	PF14200.6	gi|336255156|ref|YP_004598263.1|	-	2.4e-39	133.9	21.5	3.9e-25	88.4	6.3	3.9	3	2	0	4	4	4	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.22	gi|336255156|ref|YP_004598263.1|	-	3.5e-20	72.5	2.1	9.5e-14	51.7	0.1	2.5	1	1	1	2	2	2	2	Ricin-type	beta-trefoil	lectin	domain
TAT_signal	PF10518.9	gi|336255156|ref|YP_004598263.1|	-	0.091	12.6	0.2	0.091	12.6	0.2	1.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyco_hydro_3	PF00933.21	gi|336255157|ref|YP_004598264.1|	-	6.1e-78	262.4	0.0	8.2e-78	262.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336255157|ref|YP_004598264.1|	-	8.5e-54	182.6	0.2	1.9e-53	181.4	0.2	1.6	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336255157|ref|YP_004598264.1|	-	4.4e-18	65.1	0.0	1.9e-17	63.1	0.0	2.2	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
BPD_transp_1	PF00528.22	gi|336255158|ref|YP_004598265.1|	-	1.9e-54	184.2	33.4	1e-30	106.9	10.1	3.3	2	1	1	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336255158|ref|YP_004598265.1|	-	0.0048	16.8	2.6	0.31	11.1	0.1	3.9	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
TPR_19	PF14559.6	gi|336255158|ref|YP_004598265.1|	-	0.024	15.1	0.0	0.079	13.5	0.0	1.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Gp37	PF09646.10	gi|336255158|ref|YP_004598265.1|	-	0.11	12.3	0.1	0.19	11.6	0.1	1.4	1	0	0	1	1	1	0	Gp37	protein
Glyco_hydro_4	PF02056.16	gi|336255159|ref|YP_004598266.1|	-	5.5e-42	143.4	0.0	8.1e-42	142.8	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|336255159|ref|YP_004598266.1|	-	2.7e-41	142.0	0.0	3.9e-41	141.4	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
UDPG_MGDP_dh_C	PF03720.15	gi|336255159|ref|YP_004598266.1|	-	0.0084	16.5	0.1	0.03	14.8	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Ribonuc_red_sm	PF00268.21	gi|336255159|ref|YP_004598266.1|	-	0.021	14.3	0.1	5.2	6.4	0.0	2.2	2	0	0	2	2	2	0	Ribonucleotide	reductase,	small	chain
Ldh_1_N	PF00056.23	gi|336255159|ref|YP_004598266.1|	-	0.044	13.9	0.0	0.78	9.8	0.0	2.5	3	0	0	3	3	3	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Usp	PF00582.26	gi|336255160|ref|YP_004598267.1|	-	1e-12	48.8	0.3	2.9e-12	47.3	0.3	1.6	1	1	0	1	1	1	1	Universal	stress	protein	family
DUF1464	PF07318.12	gi|336255160|ref|YP_004598267.1|	-	0.015	14.5	0.0	0.015	14.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1464)
BPD_transp_1	PF00528.22	gi|336255161|ref|YP_004598268.1|	-	1e-21	77.5	17.8	1e-21	77.5	17.8	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2208	PF09973.9	gi|336255161|ref|YP_004598268.1|	-	1.3	8.6	5.8	1.9	8.0	0.0	2.9	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2208)
BPD_transp_1	PF00528.22	gi|336255162|ref|YP_004598269.1|	-	1.1e-17	64.3	19.1	1.1e-17	64.3	19.1	2.5	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|336255163|ref|YP_004598270.1|	-	4.8e-23	82.4	7.5	4.8e-23	82.4	7.5	1.5	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336255163|ref|YP_004598270.1|	-	8.9e-19	68.6	5.3	1.6e-18	67.8	5.3	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336255163|ref|YP_004598270.1|	-	0.0001	22.0	2.2	0.0002	21.1	2.2	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cpn60_TCP1	PF00118.24	gi|336255165|ref|YP_004598272.1|	-	8.9e-89	298.3	0.0	1e-88	298.2	0.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
PT-VENN	PF04829.13	gi|336255166|ref|YP_004598273.1|	-	0.067	13.3	1.1	0.067	13.3	1.1	2.1	3	0	0	3	3	3	0	Pre-toxin	domain	with	VENN	motif
ABC_tran	PF00005.27	gi|336255167|ref|YP_004598274.1|	-	2.2e-30	105.9	0.0	5.4e-30	104.7	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
OB_MalK	PF17912.1	gi|336255167|ref|YP_004598274.1|	-	8.7e-10	39.3	0.1	3.1e-09	37.5	0.1	2.0	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336255167|ref|YP_004598274.1|	-	4.2e-08	33.4	0.3	0.0063	16.4	0.0	2.9	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|336255167|ref|YP_004598274.1|	-	5e-06	26.6	0.5	9.6e-05	22.5	0.5	2.7	1	1	0	1	1	1	1	TOBE	domain
AAA_22	PF13401.6	gi|336255167|ref|YP_004598274.1|	-	0.00077	19.7	0.1	0.002	18.4	0.0	1.8	1	1	1	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|336255167|ref|YP_004598274.1|	-	0.00081	18.9	0.1	0.62	9.5	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336255167|ref|YP_004598274.1|	-	0.00089	19.0	0.0	0.0022	17.7	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
CysA_C_terminal	PF17850.1	gi|336255167|ref|YP_004598274.1|	-	0.0016	19.0	0.3	0.088	13.4	0.1	2.7	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
AAA_16	PF13191.6	gi|336255167|ref|YP_004598274.1|	-	0.0019	18.6	0.3	0.0053	17.2	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|336255167|ref|YP_004598274.1|	-	0.0033	17.3	0.0	0.0064	16.4	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_33	PF13671.6	gi|336255167|ref|YP_004598274.1|	-	0.028	14.6	0.2	0.12	12.6	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|336255167|ref|YP_004598274.1|	-	0.031	14.0	0.2	2	8.0	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|336255167|ref|YP_004598274.1|	-	0.06	13.1	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|336255167|ref|YP_004598274.1|	-	0.075	12.8	0.1	0.64	9.7	0.0	2.1	2	0	0	2	2	2	0	Cytidylate	kinase
AAA_25	PF13481.6	gi|336255167|ref|YP_004598274.1|	-	0.11	12.1	0.1	0.55	9.8	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|336255167|ref|YP_004598274.1|	-	0.12	12.8	0.1	0.41	11.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|336255167|ref|YP_004598274.1|	-	0.25	10.5	0.4	0.45	9.7	0.0	1.5	2	0	0	2	2	2	0	NB-ARC	domain
AP_endonuc_2	PF01261.24	gi|336255168|ref|YP_004598275.1|	-	3.4e-34	118.2	0.7	4.5e-34	117.7	0.7	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.12	gi|336255168|ref|YP_004598275.1|	-	2.3e-20	72.1	0.1	4.9e-20	71.0	0.1	1.6	1	0	0	1	1	1	1	AP	endonuclease	family	2	C	terminus
GFO_IDH_MocA	PF01408.22	gi|336255169|ref|YP_004598276.1|	-	1.3e-18	68.0	0.3	2.3e-18	67.1	0.1	1.5	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336255169|ref|YP_004598276.1|	-	3.8e-05	23.7	0.0	6.9e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
IlvN	PF07991.12	gi|336255169|ref|YP_004598276.1|	-	0.025	14.1	0.0	0.041	13.4	0.0	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Aldedh	PF00171.22	gi|336255170|ref|YP_004598277.1|	-	6.5e-164	545.8	4.4	7.3e-164	545.6	4.4	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
SBP_bac_5	PF00496.22	gi|336255171|ref|YP_004598278.1|	-	1.9e-21	76.4	6.4	2.4e-20	72.9	6.4	2.2	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Baseplate	PF16774.5	gi|336255171|ref|YP_004598278.1|	-	0.061	13.2	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Baseplate	protein
FAA_hydrolase	PF01557.18	gi|336255172|ref|YP_004598279.1|	-	2e-23	83.2	0.1	3e-22	79.4	0.1	2.1	1	1	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
IclR	PF01614.18	gi|336255173|ref|YP_004598280.1|	-	6.7e-39	132.7	0.0	9.9e-39	132.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336255173|ref|YP_004598280.1|	-	9.9e-13	47.7	0.0	3.2e-12	46.0	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336255173|ref|YP_004598280.1|	-	1.3e-05	24.7	0.0	2.3e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|336255173|ref|YP_004598280.1|	-	3.9e-05	23.5	0.0	6.8e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|336255173|ref|YP_004598280.1|	-	0.00012	22.5	0.0	0.00027	21.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|336255173|ref|YP_004598280.1|	-	0.0016	18.3	0.0	0.0029	17.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|336255173|ref|YP_004598280.1|	-	0.0033	17.5	0.0	0.007	16.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|336255173|ref|YP_004598280.1|	-	0.0042	17.0	0.1	0.011	15.6	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|336255173|ref|YP_004598280.1|	-	0.0052	16.6	0.0	0.017	15.0	0.0	1.8	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336255173|ref|YP_004598280.1|	-	0.011	15.6	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.19	gi|336255173|ref|YP_004598280.1|	-	0.012	15.8	0.0	0.039	14.1	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
LexA_DNA_bind	PF01726.16	gi|336255173|ref|YP_004598280.1|	-	0.067	13.0	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_40	PF14493.6	gi|336255173|ref|YP_004598280.1|	-	0.075	13.5	0.2	0.2	12.2	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255173|ref|YP_004598280.1|	-	0.084	12.8	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
UPF0122	PF04297.14	gi|336255173|ref|YP_004598280.1|	-	0.098	12.9	0.0	0.25	11.6	0.0	1.6	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_10	PF04967.12	gi|336255173|ref|YP_004598280.1|	-	0.1	12.4	0.0	0.25	11.2	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Peripla_BP_4	PF13407.6	gi|336255174|ref|YP_004598281.1|	-	1.4e-44	152.6	3.1	1.8e-44	152.3	3.1	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
Peripla_BP_1	PF00532.21	gi|336255174|ref|YP_004598281.1|	-	8.2e-09	35.3	0.1	1.1e-08	34.9	0.1	1.1	1	0	0	1	1	1	1	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
TAT_signal	PF10518.9	gi|336255174|ref|YP_004598281.1|	-	0.026	14.3	0.1	0.054	13.4	0.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|336255175|ref|YP_004598282.1|	-	4e-34	118.1	0.0	6.1e-34	117.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336255175|ref|YP_004598282.1|	-	2.8e-11	43.8	0.2	5.5e-06	26.4	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336255175|ref|YP_004598282.1|	-	1.6e-05	24.4	0.1	0.0018	17.7	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.9	gi|336255175|ref|YP_004598282.1|	-	0.00025	20.0	2.5	0.039	12.7	0.5	3.0	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_29	PF13555.6	gi|336255175|ref|YP_004598282.1|	-	0.00066	19.4	0.0	0.0015	18.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255175|ref|YP_004598282.1|	-	0.0012	18.8	0.0	0.0021	18.0	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|336255175|ref|YP_004598282.1|	-	0.0017	18.9	0.0	0.0033	18.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|336255175|ref|YP_004598282.1|	-	0.0017	18.1	0.0	0.0044	16.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|336255175|ref|YP_004598282.1|	-	0.0048	17.2	0.3	0.051	13.8	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|336255175|ref|YP_004598282.1|	-	0.006	16.3	0.0	0.016	15.0	0.0	1.6	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336255175|ref|YP_004598282.1|	-	0.0066	16.9	0.1	1.2	9.6	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|336255175|ref|YP_004598282.1|	-	0.0094	16.0	0.1	0.022	14.7	0.1	1.6	1	1	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
TniB	PF05621.11	gi|336255175|ref|YP_004598282.1|	-	0.018	14.4	0.1	2.2	7.7	0.1	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_10	PF12846.7	gi|336255175|ref|YP_004598282.1|	-	0.027	13.4	0.3	1.1	8.1	0.0	2.2	2	0	0	2	2	2	0	AAA-like	domain
MMR_HSR1	PF01926.23	gi|336255175|ref|YP_004598282.1|	-	0.029	14.5	0.0	0.094	12.8	0.0	1.9	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|336255175|ref|YP_004598282.1|	-	0.03	13.9	0.3	0.83	9.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.23	gi|336255175|ref|YP_004598282.1|	-	0.039	14.0	0.0	0.068	13.2	0.0	1.4	1	0	0	1	1	1	0	Dynamin	family
Zeta_toxin	PF06414.12	gi|336255175|ref|YP_004598282.1|	-	0.044	13.1	0.0	0.087	12.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_24	PF13479.6	gi|336255175|ref|YP_004598282.1|	-	0.069	12.9	0.0	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
BPD_transp_2	PF02653.16	gi|336255176|ref|YP_004598283.1|	-	5.4e-49	166.7	39.1	7.7e-49	166.3	39.1	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF1467	PF07330.12	gi|336255176|ref|YP_004598283.1|	-	0.067	13.1	2.8	0.077	12.9	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1467)
SGL	PF08450.12	gi|336255177|ref|YP_004598284.1|	-	3.6e-72	242.9	0.0	4.4e-72	242.6	0.0	1.1	1	0	0	1	1	1	1	SMP-30/Gluconolactonase/LRE-like	region
Arylesterase	PF01731.20	gi|336255177|ref|YP_004598284.1|	-	0.21	11.8	0.0	0.41	10.9	0.0	1.4	1	0	0	1	1	1	0	Arylesterase
Epimerase	PF01370.21	gi|336255178|ref|YP_004598285.1|	-	1.7e-34	119.3	0.2	1.4e-18	67.2	0.0	2.1	1	1	1	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|336255178|ref|YP_004598285.1|	-	2.4e-11	43.1	0.0	1.7e-09	37.1	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|336255178|ref|YP_004598285.1|	-	3.4e-10	39.8	0.1	4.5e-05	23.0	0.0	2.2	1	1	1	2	2	2	2	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|336255178|ref|YP_004598285.1|	-	7.5e-10	39.0	0.0	1.3e-09	38.2	0.0	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336255178|ref|YP_004598285.1|	-	1.7e-07	30.7	0.0	0.0013	17.9	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|336255178|ref|YP_004598285.1|	-	9e-07	28.3	0.1	0.027	13.6	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
TrkA_N	PF02254.18	gi|336255178|ref|YP_004598285.1|	-	0.016	15.5	0.0	0.033	14.5	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NmrA	PF05368.13	gi|336255178|ref|YP_004598285.1|	-	0.057	13.0	0.0	0.12	11.9	0.0	1.5	2	0	0	2	2	2	0	NmrA-like	family
adh_short	PF00106.25	gi|336255178|ref|YP_004598285.1|	-	0.07	12.6	0.0	0.15	11.5	0.0	1.6	1	0	0	1	1	1	0	short	chain	dehydrogenase
ATPase	PF06745.13	gi|336255179|ref|YP_004598286.1|	-	2.4e-16	59.8	0.0	4.7e-16	58.8	0.0	1.4	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|336255179|ref|YP_004598286.1|	-	0.0044	16.6	0.5	0.018	14.7	0.5	1.9	1	1	0	1	1	1	1	AAA	domain
zf-FCS	PF06467.14	gi|336255179|ref|YP_004598286.1|	-	0.049	13.6	1.8	0.15	12.1	1.8	1.8	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Elong_Iki1	PF10483.9	gi|336255179|ref|YP_004598286.1|	-	0.22	11.0	0.0	0.37	10.3	0.0	1.3	1	1	0	1	1	1	0	Elongator	subunit	Iki1
DUF123	PF01986.16	gi|336255181|ref|YP_004598288.1|	-	0.00012	22.5	0.9	0.00024	21.5	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF123
GATase_2	PF00310.21	gi|336255182|ref|YP_004598289.1|	-	8.9e-157	522.1	0.0	1.2e-156	521.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Glu_synthase	PF01645.17	gi|336255182|ref|YP_004598289.1|	-	1.9e-151	504.4	0.1	6.7e-150	499.3	0.0	2.1	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|336255182|ref|YP_004598289.1|	-	2.4e-116	388.1	0.0	4.5e-116	387.2	0.0	1.5	1	0	0	1	1	1	1	Glutamate	synthase	central	domain
GXGXG	PF01493.19	gi|336255182|ref|YP_004598289.1|	-	1.6e-80	269.2	6.2	2.7e-80	268.5	6.2	1.4	1	0	0	1	1	1	1	GXGXG	motif
NMO	PF03060.15	gi|336255182|ref|YP_004598289.1|	-	9.5e-05	21.9	0.9	0.00018	21.0	0.9	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|336255182|ref|YP_004598289.1|	-	0.0046	16.0	2.9	0.0046	16.0	2.9	2.5	3	0	0	3	3	3	1	FMN-dependent	dehydrogenase
tRNA-synt_2b	PF00587.25	gi|336255183|ref|YP_004598290.1|	-	2.6e-23	82.9	0.0	5e-23	82.0	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
ProRS-C_1	PF09180.11	gi|336255183|ref|YP_004598290.1|	-	2.3e-21	75.7	0.7	5.4e-21	74.6	0.7	1.7	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
HGTP_anticodon	PF03129.20	gi|336255183|ref|YP_004598290.1|	-	1.4e-20	73.2	0.2	2.9e-20	72.2	0.2	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
TIR_2	PF13676.6	gi|336255183|ref|YP_004598290.1|	-	0.15	12.7	0.1	4.6	7.9	0.0	2.8	3	0	0	3	3	3	0	TIR	domain
NUDIX	PF00293.28	gi|336255184|ref|YP_004598291.1|	-	3.5e-16	59.4	2.7	4.9e-16	59.0	2.7	1.2	1	0	0	1	1	1	1	NUDIX	domain
UvrD-helicase	PF00580.21	gi|336255185|ref|YP_004598292.1|	-	2.8e-49	168.4	0.0	8.6e-49	166.7	0.0	1.8	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|336255185|ref|YP_004598292.1|	-	3.5e-28	99.0	0.0	1.3e-13	51.1	0.0	3.0	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|336255185|ref|YP_004598292.1|	-	1.9e-26	93.2	0.0	1.2e-25	90.5	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|336255185|ref|YP_004598292.1|	-	1.9e-18	67.3	1.8	5.1e-18	65.9	0.0	2.7	3	0	0	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|336255185|ref|YP_004598292.1|	-	9.7e-09	34.9	0.2	0.00032	20.5	0.0	3.3	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_12	PF13087.6	gi|336255185|ref|YP_004598292.1|	-	3.3e-07	30.1	0.0	0.00025	20.7	0.0	2.8	3	0	0	3	3	3	2	AAA	domain
AAA_30	PF13604.6	gi|336255185|ref|YP_004598292.1|	-	0.00029	20.6	0.0	0.00083	19.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.18	gi|336255185|ref|YP_004598292.1|	-	0.0021	17.9	0.1	0.066	12.9	0.0	2.8	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
PDDEXK_1	PF12705.7	gi|336255186|ref|YP_004598293.1|	-	7.1e-06	26.1	0.1	0.0026	17.7	0.0	2.3	2	0	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
CobT	PF06213.12	gi|336255186|ref|YP_004598293.1|	-	0.018	14.4	0.9	0.031	13.7	0.9	1.3	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
HlyD_D4	PF16572.5	gi|336255187|ref|YP_004598294.1|	-	0.072	13.0	3.5	5.7	6.9	0.1	4.0	3	0	0	3	3	3	0	Long	alpha	hairpin	domain	of	cation	efflux	system	protein,	CusB
CBS	PF00571.28	gi|336255188|ref|YP_004598295.1|	-	2e-27	95.4	3.9	1.1e-15	57.8	0.2	2.1	2	0	0	2	2	2	2	CBS	domain
HTH_33	PF13592.6	gi|336255190|ref|YP_004598297.1|	-	0.0043	16.7	0.1	0.057	13.1	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn	helix
DSBA	PF01323.20	gi|336255191|ref|YP_004598298.1|	-	2.1e-32	112.5	0.0	2.3e-32	112.3	0.0	1.0	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_4	PF13462.6	gi|336255191|ref|YP_004598298.1|	-	8.1e-13	48.9	0.1	1e-10	42.0	0.0	2.2	2	1	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336255191|ref|YP_004598298.1|	-	0.0024	18.3	0.4	0.062	13.8	0.1	2.3	2	1	0	2	2	2	1	Thioredoxin-like	domain
zinc_ribbon_4	PF13717.6	gi|336255193|ref|YP_004598300.1|	-	0.00035	20.4	1.4	0.13	12.2	0.0	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336255193|ref|YP_004598300.1|	-	0.0026	17.8	0.3	0.24	11.5	0.0	2.1	2	0	0	2	2	2	1	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|336255193|ref|YP_004598300.1|	-	0.0032	17.5	5.1	0.022	14.8	0.8	2.1	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
TFIIS_C	PF01096.18	gi|336255193|ref|YP_004598300.1|	-	0.0064	16.3	1.9	0.049	13.5	0.1	2.0	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
DUF4379	PF14311.6	gi|336255193|ref|YP_004598300.1|	-	0.0069	16.7	0.5	0.031	14.7	0.0	1.9	2	0	0	2	2	2	1	Probable	Zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336255193|ref|YP_004598300.1|	-	0.0093	15.3	2.8	0.17	11.3	0.5	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336255193|ref|YP_004598300.1|	-	0.01	15.8	6.2	0.021	14.8	1.9	2.1	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
DUF1610	PF07754.11	gi|336255193|ref|YP_004598300.1|	-	0.012	15.6	1.7	0.012	15.6	1.7	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS1595	PF12760.7	gi|336255193|ref|YP_004598300.1|	-	0.019	14.9	0.3	0.37	10.8	0.0	2.0	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|336255193|ref|YP_004598300.1|	-	0.024	15.1	1.3	0.85	10.2	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zinc_ribbon_5	PF13719.6	gi|336255193|ref|YP_004598300.1|	-	0.026	14.3	2.5	0.43	10.4	0.5	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336255193|ref|YP_004598300.1|	-	0.033	13.9	3.8	0.087	12.6	0.1	2.4	2	1	0	2	2	2	0	zinc-ribbon	domain
zf_Rg	PF17915.1	gi|336255193|ref|YP_004598300.1|	-	0.033	13.6	0.5	0.49	9.8	0.1	2.1	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zf-Mss51	PF13824.6	gi|336255193|ref|YP_004598300.1|	-	0.04	14.0	2.4	0.081	13.0	2.4	1.6	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
IBR	PF01485.21	gi|336255193|ref|YP_004598300.1|	-	0.042	14.1	0.1	0.047	13.9	0.1	1.1	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Sgf11	PF08209.11	gi|336255193|ref|YP_004598300.1|	-	0.044	13.4	0.9	0.19	11.3	0.1	2.0	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF1272	PF06906.11	gi|336255193|ref|YP_004598300.1|	-	0.045	13.8	0.5	1.9	8.6	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DpnI	PF06044.12	gi|336255193|ref|YP_004598300.1|	-	0.057	13.1	0.1	0.066	12.8	0.1	1.0	1	0	0	1	1	1	0	Dam-replacing	family
zf-RING_7	PF02591.15	gi|336255193|ref|YP_004598300.1|	-	0.073	13.3	2.3	3.1	8.1	0.1	2.1	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
CpXC	PF14353.6	gi|336255193|ref|YP_004598300.1|	-	0.093	12.8	2.1	0.3	11.1	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
DUF35_N	PF12172.8	gi|336255193|ref|YP_004598300.1|	-	0.1	12.5	2.7	2.9	7.8	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin	PF00301.20	gi|336255193|ref|YP_004598300.1|	-	0.13	12.3	2.9	1.9	8.6	0.3	2.1	2	0	0	2	2	2	0	Rubredoxin
HypA	PF01155.19	gi|336255193|ref|YP_004598300.1|	-	0.18	11.9	0.5	0.3	11.1	0.5	1.5	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Elf1	PF05129.13	gi|336255193|ref|YP_004598300.1|	-	0.18	11.9	1.1	0.27	11.3	0.1	1.8	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
OrfB_Zn_ribbon	PF07282.11	gi|336255193|ref|YP_004598300.1|	-	0.23	11.4	1.2	0.43	10.5	1.2	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.11	gi|336255193|ref|YP_004598300.1|	-	0.37	10.5	4.7	1.7	8.4	0.5	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|336255193|ref|YP_004598300.1|	-	1.2	8.9	6.3	2.7	7.8	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Apolipoprotein	PF01442.18	gi|336255195|ref|YP_004598302.1|	-	4.4e-06	26.7	3.2	1.1e-05	25.4	3.1	1.7	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
DUF883	PF05957.13	gi|336255195|ref|YP_004598302.1|	-	0.025	15.1	3.3	0.89	10.2	0.8	2.4	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Chlorosome_CsmC	PF11098.8	gi|336255195|ref|YP_004598302.1|	-	0.031	14.3	3.5	0.19	11.7	1.0	2.1	2	0	0	2	2	2	0	Chlorosome	envelope	protein	C
YtxH	PF12732.7	gi|336255195|ref|YP_004598302.1|	-	0.11	13.0	16.7	0.64	10.6	4.2	3.1	1	1	1	2	2	2	0	YtxH-like	protein
SseC	PF04888.12	gi|336255195|ref|YP_004598302.1|	-	0.74	9.3	6.3	0.9	9.1	6.3	1.4	1	1	0	1	1	1	0	Secretion	system	effector	C	(SseC)	like	family
ATP-synt_B	PF00430.18	gi|336255195|ref|YP_004598302.1|	-	3.7	7.6	6.5	0.46	10.6	1.9	1.7	2	0	0	2	2	2	0	ATP	synthase	B/B'	CF(0)
HTH_10	PF04967.12	gi|336255196|ref|YP_004598303.1|	-	2.5e-16	59.2	0.0	3.7e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336255196|ref|YP_004598303.1|	-	1e-08	35.2	0.0	1.6e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|336255196|ref|YP_004598303.1|	-	1.1e-08	34.4	0.0	2.5e-08	33.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|336255196|ref|YP_004598303.1|	-	3.1e-05	23.6	0.0	0.00011	21.9	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336255196|ref|YP_004598303.1|	-	0.00023	21.0	0.9	0.00069	19.5	0.9	1.9	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336255196|ref|YP_004598303.1|	-	0.00057	19.4	0.0	0.0011	18.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336255196|ref|YP_004598303.1|	-	0.025	14.4	0.1	0.044	13.6	0.1	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|336255196|ref|YP_004598303.1|	-	0.026	14.5	0.5	0.059	13.3	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
HTH_AsnC-type	PF13404.6	gi|336255196|ref|YP_004598303.1|	-	0.026	14.3	0.1	0.055	13.3	0.1	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
AgrD	PF05931.11	gi|336255196|ref|YP_004598303.1|	-	0.037	14.1	0.1	1.3	9.1	0.0	2.4	2	0	0	2	2	2	0	Staphylococcal	AgrD	protein
GerE	PF00196.19	gi|336255196|ref|YP_004598303.1|	-	0.042	13.4	0.0	0.07	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Peptidase_M48	PF01435.18	gi|336255198|ref|YP_004598305.1|	-	1e-22	80.9	0.0	4.8e-22	78.7	0.0	1.9	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|336255198|ref|YP_004598305.1|	-	8.7e-05	21.9	0.0	0.00015	21.1	0.0	1.5	1	0	0	1	1	1	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|336255198|ref|YP_004598305.1|	-	0.0014	18.4	0.0	0.0021	17.9	0.0	1.2	1	0	0	1	1	1	1	SprT-like	family
DUF2268	PF10026.9	gi|336255198|ref|YP_004598305.1|	-	0.077	12.6	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
Rhomboid	PF01694.22	gi|336255199|ref|YP_004598306.1|	-	1.2e-24	87.0	16.5	1.2e-24	87.0	16.5	1.8	2	0	0	2	2	2	1	Rhomboid	family
DUF1751	PF08551.10	gi|336255199|ref|YP_004598306.1|	-	0.0018	18.8	10.4	0.0021	18.6	0.9	2.5	2	1	1	3	3	3	2	Eukaryotic	integral	membrane	protein	(DUF1751)
Ribosomal_S10	PF00338.22	gi|336255200|ref|YP_004598307.1|	-	1.3e-25	89.4	0.0	1.5e-25	89.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|336255201|ref|YP_004598308.1|	-	4.3e-57	192.8	0.0	5.1e-57	192.6	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|336255201|ref|YP_004598308.1|	-	3.1e-37	127.3	0.0	7.8e-37	126.0	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|336255201|ref|YP_004598308.1|	-	5e-15	55.7	3.8	1.5e-14	54.1	1.2	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|336255201|ref|YP_004598308.1|	-	3.7e-07	30.2	0.1	2.8e-06	27.4	0.1	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|336255201|ref|YP_004598308.1|	-	0.0009	19.2	1.2	0.068	13.1	0.2	2.3	1	1	1	2	2	2	1	RsgA	GTPase
Gtr1_RagA	PF04670.12	gi|336255201|ref|YP_004598308.1|	-	0.0026	17.1	0.1	0.068	12.5	0.0	2.2	2	0	0	2	2	2	1	Gtr1/RagA	G	protein	conserved	region
Dynamin_N	PF00350.23	gi|336255201|ref|YP_004598308.1|	-	0.0073	16.4	0.0	1.4	8.9	0.0	2.4	1	1	0	1	1	1	1	Dynamin	family
SRPRB	PF09439.10	gi|336255201|ref|YP_004598308.1|	-	0.011	15.2	0.0	0.41	10.1	0.0	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
GTP_EFTU_D4	PF14578.6	gi|336255201|ref|YP_004598308.1|	-	0.016	15.1	0.6	0.057	13.3	0.6	1.9	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
FeoB_N	PF02421.18	gi|336255201|ref|YP_004598308.1|	-	0.018	14.6	0.1	0.33	10.5	0.1	2.5	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Septin	PF00735.18	gi|336255201|ref|YP_004598308.1|	-	0.12	11.7	0.0	0.28	10.4	0.0	1.5	1	1	0	1	1	1	0	Septin
Homoserine_dh	PF00742.19	gi|336255202|ref|YP_004598309.1|	-	1.2e-48	165.3	0.1	1.9e-48	164.6	0.1	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase
ELFV_dehydrog	PF00208.21	gi|336255202|ref|YP_004598309.1|	-	5.7e-08	32.8	0.1	1.1e-07	31.9	0.1	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_3	PF03447.16	gi|336255202|ref|YP_004598309.1|	-	5.2e-07	30.3	0.1	1.2e-06	29.2	0.1	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|336255202|ref|YP_004598309.1|	-	0.0032	17.4	0.0	0.005	16.8	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336255202|ref|YP_004598309.1|	-	0.004	16.5	0.0	0.0063	15.9	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PglD_N	PF17836.1	gi|336255202|ref|YP_004598309.1|	-	0.0081	16.8	0.0	0.017	15.8	0.0	1.7	1	0	0	1	1	1	1	PglD	N-terminal	domain
XdhC_C	PF13478.6	gi|336255202|ref|YP_004598309.1|	-	0.0083	16.6	0.1	0.017	15.7	0.1	1.6	1	0	0	1	1	1	1	XdhC	Rossmann	domain
F420_oxidored	PF03807.17	gi|336255202|ref|YP_004598309.1|	-	0.009	16.6	0.1	0.058	14.0	0.0	2.3	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.16	gi|336255202|ref|YP_004598309.1|	-	0.01	15.5	0.0	0.015	14.9	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.22	gi|336255202|ref|YP_004598309.1|	-	0.021	15.6	0.0	0.04	14.8	0.0	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TrkA_N	PF02254.18	gi|336255202|ref|YP_004598309.1|	-	0.072	13.3	0.1	0.67	10.2	0.0	2.4	2	0	0	2	2	2	0	TrkA-N	domain
ACT	PF01842.25	gi|336255203|ref|YP_004598310.1|	-	2.9e-06	27.0	0.5	0.00095	18.9	0.0	3.1	2	1	1	3	3	3	2	ACT	domain
Arg_repressor	PF01316.21	gi|336255203|ref|YP_004598310.1|	-	0.12	12.1	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	Arginine	repressor,	DNA	binding	domain
Sigma70_r1_1	PF03979.14	gi|336255203|ref|YP_004598310.1|	-	0.22	11.6	0.0	0.22	11.6	0.0	2.1	2	0	0	2	2	2	0	Sigma-70	factor,	region	1.1
NifU	PF01106.17	gi|336255204|ref|YP_004598311.1|	-	3.9e-09	36.5	0.3	6.8e-09	35.8	0.3	1.4	1	1	0	1	1	1	1	NifU-like	domain
DAGK_prokar	PF01219.19	gi|336255206|ref|YP_004598313.1|	-	0.085	12.7	1.9	0.14	12.0	1.9	1.4	1	0	0	1	1	1	0	Prokaryotic	diacylglycerol	kinase
EI24	PF07264.11	gi|336255206|ref|YP_004598313.1|	-	0.22	11.8	12.2	0.98	9.6	12.5	1.9	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
DUF948	PF06103.11	gi|336255206|ref|YP_004598313.1|	-	1.1	9.6	4.2	6.1	7.2	3.7	2.4	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DMRL_synthase	PF00885.19	gi|336255207|ref|YP_004598314.1|	-	6.6e-30	103.8	1.4	8.2e-30	103.5	1.4	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Rubredoxin_C	PF18267.1	gi|336255207|ref|YP_004598314.1|	-	0.19	11.6	0.1	0.31	11.0	0.1	1.3	1	0	0	1	1	1	0	Rubredoxin	NAD+	reductase	C-terminal	domain
Cadherin_4	PF17803.1	gi|336255207|ref|YP_004598314.1|	-	0.32	11.7	7.0	2	9.1	7.0	2.2	1	1	0	1	1	1	0	Bacterial	cadherin-like	domain
Aminotran_1_2	PF00155.21	gi|336255208|ref|YP_004598315.1|	-	6.7e-65	219.6	0.0	7.6e-65	219.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|336255208|ref|YP_004598315.1|	-	0.00013	20.6	0.0	0.00021	19.9	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|336255208|ref|YP_004598315.1|	-	0.00095	18.2	0.1	0.0035	16.4	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|336255208|ref|YP_004598315.1|	-	0.0075	15.6	0.2	0.013	14.8	0.2	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_MocR	PF12897.7	gi|336255208|ref|YP_004598315.1|	-	0.017	13.9	0.1	0.023	13.5	0.1	1.2	1	0	0	1	1	1	0	Alanine-glyoxylate	amino-transferase
Aminotran_3	PF00202.21	gi|336255208|ref|YP_004598315.1|	-	0.11	11.1	0.0	0.2	10.3	0.0	1.4	1	1	0	1	1	1	0	Aminotransferase	class-III
Beta_elim_lyase	PF01212.21	gi|336255208|ref|YP_004598315.1|	-	0.13	11.5	0.1	0.32	10.2	0.0	1.6	2	0	0	2	2	2	0	Beta-eliminating	lyase
Cucumopine_C	PF18631.1	gi|336255208|ref|YP_004598315.1|	-	0.13	12.2	0.1	0.41	10.6	0.1	1.8	1	1	0	1	1	1	0	Cucumopine	synthase	C-terminal	helical	bundle	domain
DZR	PF12773.7	gi|336255209|ref|YP_004598316.1|	-	0.00099	19.1	21.4	0.048	13.7	4.2	4.3	1	1	2	3	3	3	1	Double	zinc	ribbon
zf-C2H2_6	PF13912.6	gi|336255209|ref|YP_004598316.1|	-	0.013	15.5	0.9	0.013	15.5	0.9	4.2	4	0	0	4	4	4	0	C2H2-type	zinc	finger
FYVE	PF01363.21	gi|336255209|ref|YP_004598316.1|	-	0.019	15.1	1.2	0.019	15.1	1.2	4.4	3	2	0	3	3	3	0	FYVE	zinc	finger
C1_1	PF00130.22	gi|336255209|ref|YP_004598316.1|	-	0.028	14.3	18.5	0.049	13.5	0.3	5.0	4	1	1	5	5	5	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-MYND	PF01753.18	gi|336255209|ref|YP_004598316.1|	-	0.057	13.5	10.7	0.61	10.2	0.1	4.5	2	1	1	3	3	3	0	MYND	finger
Zn-ribbon_8	PF09723.10	gi|336255209|ref|YP_004598316.1|	-	0.063	13.4	24.2	0.22	11.7	0.5	5.6	4	1	0	5	5	5	0	Zinc	ribbon	domain
Opiods_neuropep	PF01160.18	gi|336255209|ref|YP_004598316.1|	-	0.12	12.4	6.2	0.3	11.2	0.3	3.0	3	0	0	3	3	3	0	Vertebrate	endogenous	opioids	neuropeptide
OrfB_Zn_ribbon	PF07282.11	gi|336255209|ref|YP_004598316.1|	-	0.23	11.4	24.0	2.1	8.4	0.8	5.2	5	0	0	5	5	5	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|336255209|ref|YP_004598316.1|	-	1.1	9.3	20.5	15	5.7	5.1	4.4	3	1	1	4	4	4	0	zinc-ribbons
Kp4	PF09044.10	gi|336255209|ref|YP_004598316.1|	-	1.6	8.8	6.4	12	6.0	0.2	3.5	3	1	1	4	4	4	0	Kp4
FYVE_2	PF02318.16	gi|336255209|ref|YP_004598316.1|	-	2	8.7	8.2	0.17	12.1	0.5	2.7	2	1	2	4	4	3	0	FYVE-type	zinc	finger
HypA	PF01155.19	gi|336255209|ref|YP_004598316.1|	-	2	8.4	18.7	1.4	8.9	0.6	4.2	2	2	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
FpoO	PF10621.9	gi|336255209|ref|YP_004598316.1|	-	2.3	8.6	7.5	9.1	6.6	0.1	2.9	1	1	1	2	2	2	0	F420H2	dehydrogenase	subunit	FpoO
zf-ribbon_3	PF13248.6	gi|336255209|ref|YP_004598316.1|	-	2.5	7.6	27.9	3.4	7.2	0.3	6.3	6	1	0	6	6	6	0	zinc-ribbon	domain
zf-Di19	PF05605.12	gi|336255209|ref|YP_004598316.1|	-	3.3	8.1	11.0	0.08	13.2	1.8	2.9	3	0	0	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_jaz	PF12171.8	gi|336255209|ref|YP_004598316.1|	-	3.8	7.9	0.0	3.8	7.9	0.0	3.2	3	0	0	3	3	2	0	Zinc-finger	double-stranded	RNA-binding
Nudix_N_2	PF14803.6	gi|336255209|ref|YP_004598316.1|	-	6.9	6.7	25.1	0.51	10.3	1.5	6.5	6	1	0	6	6	6	0	Nudix	N-terminal
IMPDH	PF00478.25	gi|336255210|ref|YP_004598317.1|	-	2.2e-122	408.4	4.8	2.6e-122	408.1	4.8	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.15	gi|336255210|ref|YP_004598317.1|	-	8.2e-09	35.3	11.4	0.00015	21.3	8.5	2.5	1	1	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|336255210|ref|YP_004598317.1|	-	4.6e-07	29.2	10.4	1.5e-06	27.5	10.4	1.8	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|336255210|ref|YP_004598317.1|	-	2.6e-06	27.1	1.2	0.00029	20.4	0.1	2.3	2	0	0	2	2	2	2	Histidine	biosynthesis	protein
Glu_synthase	PF01645.17	gi|336255210|ref|YP_004598317.1|	-	0.00065	18.9	2.5	0.00065	18.9	2.5	2.1	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.21	gi|336255210|ref|YP_004598317.1|	-	0.0095	15.2	0.7	0.016	14.4	0.7	1.3	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.17	gi|336255210|ref|YP_004598317.1|	-	0.021	14.2	5.4	0.037	13.4	5.1	1.5	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase
Aldolase	PF01081.19	gi|336255210|ref|YP_004598317.1|	-	0.077	12.4	4.4	0.15	11.5	0.9	2.4	1	1	2	3	3	3	0	KDPG	and	KHG	aldolase
ATP-grasp	PF02222.22	gi|336255211|ref|YP_004598318.1|	-	3.9e-52	176.3	0.0	6.2e-52	175.6	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|336255211|ref|YP_004598318.1|	-	7.6e-20	70.4	0.1	1.8e-19	69.2	0.1	1.6	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|336255211|ref|YP_004598318.1|	-	2.2e-08	33.9	0.1	2.9e-07	30.2	0.1	2.4	2	1	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|336255211|ref|YP_004598318.1|	-	6.1e-08	32.9	0.0	9.2e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
2-Hacid_dh_C	PF02826.19	gi|336255211|ref|YP_004598318.1|	-	3.4e-06	26.5	0.0	6.4e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
CPSase_L_D2	PF02786.17	gi|336255211|ref|YP_004598318.1|	-	0.00046	19.7	0.1	0.00074	19.1	0.1	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
XdhC_C	PF13478.6	gi|336255211|ref|YP_004598318.1|	-	0.0012	19.3	0.2	0.004	17.6	0.0	1.9	2	0	0	2	2	2	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|336255211|ref|YP_004598318.1|	-	0.0018	18.2	0.2	0.0042	17.0	0.0	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ATP-grasp_5	PF13549.6	gi|336255211|ref|YP_004598318.1|	-	0.014	14.8	0.0	0.039	13.4	0.0	1.8	2	0	0	2	2	2	0	ATP-grasp	domain
Pyr_redox	PF00070.27	gi|336255211|ref|YP_004598318.1|	-	0.023	15.2	0.5	0.14	12.8	0.0	2.7	3	0	0	3	3	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
PALP	PF00291.25	gi|336255211|ref|YP_004598318.1|	-	0.036	13.5	0.1	0.22	10.9	0.0	2.2	2	1	0	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
GARS_A	PF01071.19	gi|336255211|ref|YP_004598318.1|	-	0.04	13.7	0.0	0.066	13.0	0.0	1.4	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
NAD_binding_2	PF03446.15	gi|336255211|ref|YP_004598318.1|	-	0.16	12.1	0.0	0.54	10.4	0.0	1.9	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
RRM_1	PF00076.22	gi|336255211|ref|YP_004598318.1|	-	0.18	11.7	0.1	5.3	6.9	0.0	2.6	1	1	1	2	2	2	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
AIRC	PF00731.20	gi|336255212|ref|YP_004598319.1|	-	1.5e-48	164.2	0.0	1.8e-48	163.9	0.0	1.1	1	0	0	1	1	1	1	AIR	carboxylase
Oxidored_q4	PF00507.19	gi|336255213|ref|YP_004598320.1|	-	3.4e-31	107.3	0.4	4.1e-31	107.1	0.4	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
TrbC	PF04956.13	gi|336255213|ref|YP_004598320.1|	-	0.041	14.1	3.2	0.35	11.1	0.2	2.3	2	0	0	2	2	2	0	TrbC/VIRB2	family
Oxidored_q6	PF01058.22	gi|336255214|ref|YP_004598321.1|	-	3.9e-21	75.3	0.1	5.6e-21	74.7	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_49kDa	PF00346.19	gi|336255215|ref|YP_004598322.1|	-	1.9e-87	292.8	0.2	4.6e-86	288.3	0.2	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|336255215|ref|YP_004598322.1|	-	1.6e-33	115.9	0.2	3e-33	115.1	0.2	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|336255215|ref|YP_004598322.1|	-	0.045	12.6	0.0	2.8	6.7	0.0	2.4	3	0	0	3	3	3	0	Nickel-dependent	hydrogenase
NADHdh	PF00146.21	gi|336255216|ref|YP_004598323.1|	-	2.7e-94	315.8	12.7	3.3e-94	315.6	12.7	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.27	gi|336255217|ref|YP_004598324.1|	-	1.5e-12	46.7	8.9	1.9e-06	27.5	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|336255217|ref|YP_004598324.1|	-	8e-12	45.6	10.6	1.2e-11	44.9	10.6	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|336255217|ref|YP_004598324.1|	-	1.6e-10	41.7	3.2	1.8e-05	25.6	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|336255217|ref|YP_004598324.1|	-	3.3e-09	36.8	22.8	4.7e-07	29.9	12.2	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|336255217|ref|YP_004598324.1|	-	4.3e-09	36.4	8.0	6.8e-09	35.7	8.0	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336255217|ref|YP_004598324.1|	-	5.6e-06	26.4	10.7	4.7e-05	23.4	11.9	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336255217|ref|YP_004598324.1|	-	6.6e-06	26.0	12.8	0.0053	16.8	1.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|336255217|ref|YP_004598324.1|	-	1.5e-05	25.4	12.7	0.0057	17.2	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336255217|ref|YP_004598324.1|	-	5.1e-05	23.6	11.1	0.00084	19.7	12.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336255217|ref|YP_004598324.1|	-	0.00011	22.1	12.8	0.0044	17.0	1.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336255217|ref|YP_004598324.1|	-	0.00036	20.8	14.3	0.0034	17.8	3.8	2.3	1	1	1	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|336255217|ref|YP_004598324.1|	-	0.001	19.8	15.2	0.018	16.0	3.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336255217|ref|YP_004598324.1|	-	0.0018	18.4	9.7	0.09	13.0	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|336255217|ref|YP_004598324.1|	-	0.0029	18.4	4.2	0.73	10.7	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|336255217|ref|YP_004598324.1|	-	0.07	13.3	7.7	0.22	11.7	7.7	1.7	1	1	0	1	1	1	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
TNFR_c6	PF00020.18	gi|336255217|ref|YP_004598324.1|	-	0.16	12.4	7.5	2.5	8.6	1.2	2.5	2	0	0	2	2	2	0	TNFR/NGFR	cysteine-rich	region
Fer4_13	PF13370.6	gi|336255217|ref|YP_004598324.1|	-	1.1	9.8	13.1	2.2	8.9	3.2	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Oxidored_q3	PF00499.20	gi|336255218|ref|YP_004598325.1|	-	4.4e-21	75.1	3.0	5.8e-21	74.7	3.0	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|336255218|ref|YP_004598325.1|	-	0.009	16.1	12.5	0.012	15.7	12.5	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
DUF2339	PF10101.9	gi|336255218|ref|YP_004598325.1|	-	0.014	14.0	6.3	0.015	13.9	6.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
DUF2530	PF10745.9	gi|336255218|ref|YP_004598325.1|	-	0.052	13.8	3.5	0.067	13.4	3.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2530)
DUF4191	PF13829.6	gi|336255218|ref|YP_004598325.1|	-	0.19	11.0	4.2	0.22	10.8	4.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Oxidored_q2	PF00420.24	gi|336255220|ref|YP_004598327.1|	-	6e-23	80.5	9.0	7.3e-23	80.2	9.0	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
NicO	PF03824.16	gi|336255220|ref|YP_004598327.1|	-	0.032	13.6	4.7	0.034	13.5	4.7	1.1	1	0	0	1	1	1	0	High-affinity	nickel-transport	protein
PEP-CTERM	PF07589.11	gi|336255220|ref|YP_004598327.1|	-	0.18	11.9	0.5	0.18	11.9	0.5	3.3	2	1	0	2	2	2	0	PEP-CTERM	motif
Proton_antipo_M	PF00361.20	gi|336255221|ref|YP_004598328.1|	-	1.7e-75	253.9	19.8	4.4e-75	252.6	19.8	1.7	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|336255221|ref|YP_004598328.1|	-	3.9e-15	55.6	3.6	4.8e-15	55.4	0.1	3.0	3	0	0	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NADH5_C	PF06455.11	gi|336255221|ref|YP_004598328.1|	-	0.0015	18.2	2.1	0.002	17.8	0.0	2.3	2	0	0	2	2	2	1	NADH	dehydrogenase	subunit	5	C-terminus
DUF5310	PF17237.2	gi|336255221|ref|YP_004598328.1|	-	0.0075	16.1	0.1	0.039	13.8	0.1	2.3	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5310)
Proton_antipo_C	PF01010.19	gi|336255221|ref|YP_004598328.1|	-	0.013	15.2	0.0	0.032	13.9	0.0	1.6	1	1	0	1	1	1	0	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
Proton_antipo_M	PF00361.20	gi|336255222|ref|YP_004598329.1|	-	9.3e-75	251.5	26.7	9.3e-75	251.5	26.7	1.8	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Oxidored_q5_N	PF01059.17	gi|336255222|ref|YP_004598329.1|	-	1.9e-05	24.7	0.2	1.9e-05	24.7	0.2	3.4	4	1	0	5	5	5	1	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Proton_antipo_N	PF00662.20	gi|336255222|ref|YP_004598329.1|	-	0.014	15.4	0.2	0.069	13.2	0.2	2.3	1	0	0	1	1	1	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_M	PF00361.20	gi|336255223|ref|YP_004598330.1|	-	5.3e-69	232.6	21.5	5.3e-69	232.6	21.5	1.8	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|336255223|ref|YP_004598330.1|	-	2.7e-05	24.2	4.5	0.00013	21.9	4.5	2.3	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
TrkA_N	PF02254.18	gi|336255224|ref|YP_004598331.1|	-	3.1e-14	53.2	0.0	1e-13	51.6	0.0	1.9	1	0	0	1	1	1	1	TrkA-N	domain
DHHA1	PF02272.19	gi|336255224|ref|YP_004598331.1|	-	6.6e-14	52.5	1.0	3.3e-13	50.2	0.3	2.5	4	0	0	4	4	4	1	DHHA1	domain
DHH	PF01368.20	gi|336255224|ref|YP_004598331.1|	-	1.4e-12	47.7	0.0	2.9e-12	46.7	0.0	1.6	1	0	0	1	1	1	1	DHH	family
Sacchrp_dh_NADP	PF03435.18	gi|336255224|ref|YP_004598331.1|	-	0.0012	19.0	0.0	0.003	17.8	0.0	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|336255224|ref|YP_004598331.1|	-	0.012	15.5	0.4	0.012	15.5	0.4	2.8	2	1	1	3	3	3	0	NAD(P)H-binding
ApbA	PF02558.16	gi|336255224|ref|YP_004598331.1|	-	0.083	12.5	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DRTGG	PF07085.12	gi|336255224|ref|YP_004598331.1|	-	0.1	12.4	0.0	0.28	11.0	0.0	1.8	1	1	0	1	1	1	0	DRTGG	domain
NTP_transf_3	PF12804.7	gi|336255224|ref|YP_004598331.1|	-	2.4	8.5	5.9	87	3.4	1.7	3.8	2	2	0	2	2	2	0	MobA-like	NTP	transferase	domain
Zn_Tnp_IS1595	PF12760.7	gi|336255225|ref|YP_004598332.1|	-	0.0032	17.4	1.3	0.0043	17.0	1.3	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|336255225|ref|YP_004598332.1|	-	0.011	16.1	0.7	0.012	16.0	0.7	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|336255225|ref|YP_004598332.1|	-	0.04	14.0	3.0	0.57	10.4	0.2	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF35_N	PF12172.8	gi|336255225|ref|YP_004598332.1|	-	0.066	13.1	0.7	0.066	13.1	0.7	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|336255225|ref|YP_004598332.1|	-	0.077	13.0	1.5	2.4	8.2	0.1	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1	PF03811.13	gi|336255225|ref|YP_004598332.1|	-	0.077	12.7	3.0	0.27	11.0	3.0	1.8	1	1	0	1	1	1	0	InsA	N-terminal	domain
eIF-5_eIF-2B	PF01873.17	gi|336255225|ref|YP_004598332.1|	-	0.086	12.7	0.2	0.1	12.5	0.2	1.0	1	0	0	1	1	1	0	Domain	found	in	IF2B/IF5
zf-Dof	PF02701.15	gi|336255225|ref|YP_004598332.1|	-	0.18	11.9	4.8	1.1	9.5	4.8	1.9	1	1	0	1	1	1	0	Dof	domain,	zinc	finger
TFIIS_C	PF01096.18	gi|336255225|ref|YP_004598332.1|	-	0.18	11.6	4.3	5.8	6.9	1.3	2.2	1	1	1	2	2	2	0	Transcription	factor	S-II	(TFIIS)
CBS	PF00571.28	gi|336255226|ref|YP_004598333.1|	-	5.1e-26	90.9	2.2	4.4e-12	46.3	0.1	2.7	2	0	0	2	2	2	2	CBS	domain
ParBc	PF02195.18	gi|336255226|ref|YP_004598333.1|	-	3.3e-10	40.1	0.1	9.1e-10	38.7	0.1	1.8	1	1	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|336255226|ref|YP_004598333.1|	-	0.014	15.5	0.0	0.11	12.6	0.0	2.0	1	1	0	1	1	1	0	Putative	ParB-like	nuclease
Dehyd-heme_bind	PF09098.10	gi|336255226|ref|YP_004598333.1|	-	0.068	12.8	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Quinohemoprotein	amine	dehydrogenase	A,	alpha	subunit,	haem	binding
AMP-binding	PF00501.28	gi|336255227|ref|YP_004598334.1|	-	1.3e-90	304.1	0.1	1.5e-90	303.8	0.1	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336255227|ref|YP_004598334.1|	-	1.4e-24	86.8	0.6	3.1e-24	85.7	0.6	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|336255227|ref|YP_004598334.1|	-	3.7e-12	46.0	3.8	3.7e-12	46.0	3.8	2.1	2	0	0	2	2	2	1	Acetyl-coenzyme	A	synthetase	N-terminus
HalOD1	PF18545.1	gi|336255228|ref|YP_004598335.1|	-	0.051	13.8	1.0	4	7.8	0.0	3.9	3	1	2	5	5	5	0	Halobacterial	output	domain	1
polyprenyl_synt	PF00348.17	gi|336255229|ref|YP_004598336.1|	-	7.7e-57	192.3	0.0	9.2e-57	192.0	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Peptidase_M28	PF04389.17	gi|336255230|ref|YP_004598337.1|	-	1.1e-35	123.1	0.3	1.5e-35	122.7	0.3	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|336255230|ref|YP_004598337.1|	-	5.1e-15	55.3	0.0	1.2e-14	54.0	0.0	1.7	1	0	0	1	1	1	1	PA	domain
Peptidase_M42	PF05343.14	gi|336255230|ref|YP_004598337.1|	-	1.1e-05	24.6	0.8	1.9e-05	23.8	0.8	1.3	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|336255230|ref|YP_004598337.1|	-	0.0002	21.1	0.1	0.00032	20.5	0.1	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
IgG_binding_B	PF01378.17	gi|336255230|ref|YP_004598337.1|	-	0.1	12.6	0.1	13	6.0	0.0	2.7	2	0	0	2	2	2	0	B	domain
NAD_kinase	PF01513.21	gi|336255231|ref|YP_004598338.1|	-	6.1e-19	68.3	1.0	7.7e-19	68.0	1.0	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
HhH-GPD	PF00730.25	gi|336255233|ref|YP_004598340.1|	-	6.7e-22	78.0	0.0	1.6e-21	76.7	0.0	1.6	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|336255233|ref|YP_004598340.1|	-	9.9e-10	37.8	0.0	2.4e-09	36.6	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.9	gi|336255233|ref|YP_004598340.1|	-	1.8e-06	28.1	6.5	3.1e-06	27.3	6.5	1.4	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.6	gi|336255233|ref|YP_004598340.1|	-	0.008	16.8	0.4	0.02	15.5	0.0	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
LPD29	PF18847.1	gi|336255233|ref|YP_004598340.1|	-	0.013	16.4	0.0	0.021	15.7	0.0	1.4	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	29
5_3_exonuc	PF01367.20	gi|336255233|ref|YP_004598340.1|	-	0.024	15.2	0.0	0.053	14.1	0.0	1.5	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF2400	PF09674.10	gi|336255233|ref|YP_004598340.1|	-	0.19	11.7	0.0	0.57	10.1	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2400)
MDD_C	PF18376.1	gi|336255234|ref|YP_004598341.1|	-	1.5e-06	28.1	0.1	2.4e-06	27.4	0.1	1.2	1	0	0	1	1	1	1	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
GHMP_kinases_N	PF00288.26	gi|336255234|ref|YP_004598341.1|	-	9.2e-06	25.8	5.3	3.7e-05	23.9	5.5	1.9	1	1	1	2	2	2	1	GHMP	kinases	N	terminal	domain
TarH	PF02203.15	gi|336255234|ref|YP_004598341.1|	-	0.01	15.8	1.2	0.01	15.8	1.2	1.8	2	0	0	2	2	2	0	Tar	ligand	binding	domain	homologue
CPSase_L_D2	PF02786.17	gi|336255236|ref|YP_004598343.1|	-	7.2e-93	309.9	0.0	5.2e-57	192.8	0.0	2.7	2	1	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|336255236|ref|YP_004598343.1|	-	5.2e-24	84.9	0.1	1.4e-23	83.5	0.1	1.8	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATPgrasp_Ter	PF15632.6	gi|336255236|ref|YP_004598343.1|	-	1.3e-11	44.3	0.0	0.00022	21.0	0.0	2.7	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.22	gi|336255236|ref|YP_004598343.1|	-	1.2e-09	38.0	0.1	0.00011	21.8	0.0	2.7	3	0	0	3	3	3	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|336255236|ref|YP_004598343.1|	-	7.6e-09	35.4	0.0	1.2e-05	24.9	0.0	2.5	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|336255236|ref|YP_004598343.1|	-	4.9e-07	29.9	0.0	0.012	15.6	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
HDV_ag	PF01517.18	gi|336255236|ref|YP_004598343.1|	-	0.012	15.4	0.1	0.025	14.4	0.1	1.4	1	0	0	1	1	1	0	Hepatitis	delta	virus	delta	antigen
GFO_IDH_MocA	PF01408.22	gi|336255236|ref|YP_004598343.1|	-	0.13	13.1	0.7	28	5.6	0.1	3.3	3	0	0	3	3	3	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
B12-binding	PF02310.19	gi|336255236|ref|YP_004598343.1|	-	5.2	7.1	6.1	7.4	6.6	0.0	4.0	4	1	1	5	5	5	0	B12	binding	domain
Methyltransf_11	PF08241.12	gi|336255239|ref|YP_004598346.1|	-	8.8e-11	42.3	0.0	1.5e-10	41.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336255239|ref|YP_004598346.1|	-	2.4e-09	37.8	0.1	6.6e-09	36.4	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336255239|ref|YP_004598346.1|	-	8.4e-05	22.5	0.0	0.00012	21.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336255239|ref|YP_004598346.1|	-	0.00012	22.7	0.1	0.00026	21.7	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|336255239|ref|YP_004598346.1|	-	0.048	14.7	0.3	0.098	13.7	0.3	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336255239|ref|YP_004598346.1|	-	0.12	12.0	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Aldo_ket_red	PF00248.21	gi|336255240|ref|YP_004598347.1|	-	2.3e-22	79.6	0.0	2.7e-22	79.3	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
EF-hand_10	PF14788.6	gi|336255242|ref|YP_004598349.1|	-	0.021	14.7	0.7	1.3	9.0	0.1	2.3	2	0	0	2	2	2	0	EF	hand
Chordopox_A13L	PF05961.11	gi|336255242|ref|YP_004598349.1|	-	0.14	12.4	0.0	0.19	12.0	0.0	1.2	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
PYRIN	PF02758.16	gi|336255242|ref|YP_004598349.1|	-	0.16	12.2	0.0	0.2	11.8	0.0	1.2	1	0	0	1	1	1	0	PAAD/DAPIN/Pyrin	domain
Exosortase_EpsH	PF09721.10	gi|336255243|ref|YP_004598350.1|	-	9e-15	54.9	13.8	9e-15	54.9	13.8	1.5	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
DUF5336	PF17270.2	gi|336255243|ref|YP_004598350.1|	-	0.011	15.3	0.6	0.011	15.3	0.6	2.7	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5336)
BACON	PF13004.7	gi|336255243|ref|YP_004598350.1|	-	0.014	15.4	0.0	0.044	13.8	0.0	1.8	2	0	0	2	2	2	0	Putative	binding	domain,	N-terminal
Metallophos	PF00149.28	gi|336255244|ref|YP_004598351.1|	-	2.6e-06	28.1	0.2	6.6e-06	26.8	0.2	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|336255244|ref|YP_004598351.1|	-	1.5e-05	25.2	0.2	2.2e-05	24.7	0.2	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Aldolase	PF01081.19	gi|336255244|ref|YP_004598351.1|	-	0.18	11.2	0.0	0.35	10.3	0.0	1.4	1	0	0	1	1	1	0	KDPG	and	KHG	aldolase
Amino_oxidase	PF01593.24	gi|336255245|ref|YP_004598352.1|	-	4.6e-47	161.3	1.4	5.5e-47	161.1	1.4	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|336255245|ref|YP_004598352.1|	-	3e-15	56.2	0.4	9.9e-15	54.5	0.4	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336255245|ref|YP_004598352.1|	-	2.9e-09	37.0	12.3	4.8e-08	33.0	12.2	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336255245|ref|YP_004598352.1|	-	1.1e-07	31.5	2.2	1.4e-05	24.5	1.8	2.3	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|336255245|ref|YP_004598352.1|	-	2.6e-06	26.8	3.8	1.7e-05	24.1	2.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|336255245|ref|YP_004598352.1|	-	4.6e-06	26.1	3.0	0.0001	21.7	0.5	2.6	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336255245|ref|YP_004598352.1|	-	7.7e-06	24.9	0.0	0.00034	19.4	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|336255245|ref|YP_004598352.1|	-	0.00043	20.8	0.9	0.0097	16.5	1.7	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|336255245|ref|YP_004598352.1|	-	0.0029	18.2	0.5	0.0076	16.8	0.5	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Thi4	PF01946.17	gi|336255245|ref|YP_004598352.1|	-	0.0037	16.5	0.2	0.0072	15.6	0.2	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.6	gi|336255245|ref|YP_004598352.1|	-	0.0055	16.7	3.3	0.12	12.4	0.4	2.6	2	0	0	2	2	2	1	FAD-NAD(P)-binding
NAD_binding_7	PF13241.6	gi|336255245|ref|YP_004598352.1|	-	0.0058	17.1	0.3	0.13	12.7	0.0	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.7	gi|336255245|ref|YP_004598352.1|	-	0.0095	15.3	4.0	0.019	14.3	4.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|336255245|ref|YP_004598352.1|	-	0.011	15.0	0.3	0.021	14.1	0.3	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.14	gi|336255245|ref|YP_004598352.1|	-	0.14	10.9	1.0	0.28	10.0	1.0	1.4	1	0	0	1	1	1	0	Tryptophan	halogenase
FMO-like	PF00743.19	gi|336255245|ref|YP_004598352.1|	-	0.23	9.8	0.0	0.35	9.2	0.0	1.2	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
GIDA	PF01134.22	gi|336255245|ref|YP_004598352.1|	-	0.24	10.4	4.2	0.077	12.1	1.2	1.6	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|336255245|ref|YP_004598352.1|	-	0.35	10.1	0.6	0.72	9.0	0.1	1.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336255245|ref|YP_004598352.1|	-	0.77	8.7	3.5	0.88	8.5	0.3	2.1	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Gluconate_2-dh3	PF13618.6	gi|336255246|ref|YP_004598353.1|	-	8.9e-44	149.0	0.1	8.9e-44	149.0	0.1	1.5	2	0	0	2	2	2	1	Gluconate	2-dehydrogenase	subunit	3
GMC_oxred_C	PF05199.13	gi|336255247|ref|YP_004598354.1|	-	1.6e-18	67.6	0.0	2.8e-18	66.8	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|336255247|ref|YP_004598354.1|	-	1.6e-09	37.6	0.0	2.4e-07	30.4	0.0	2.2	2	0	0	2	2	2	2	GMC	oxidoreductase
NAD_binding_8	PF13450.6	gi|336255247|ref|YP_004598354.1|	-	0.11	12.7	0.1	0.38	11.0	0.1	1.9	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|336255247|ref|YP_004598354.1|	-	0.15	11.2	0.0	0.25	10.5	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|336255247|ref|YP_004598354.1|	-	0.22	10.7	0.1	0.46	9.7	0.1	1.5	1	0	0	1	1	1	0	Thi4	family
DUF1382	PF07131.11	gi|336255249|ref|YP_004598356.1|	-	0.4	10.7	1.5	0.54	10.3	1.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1382)
ExoD	PF06055.12	gi|336255249|ref|YP_004598356.1|	-	0.6	9.5	7.5	0.63	9.4	7.5	1.0	1	0	0	1	1	1	0	Exopolysaccharide	synthesis,	ExoD
DUF3953	PF13129.6	gi|336255249|ref|YP_004598356.1|	-	2.7	7.8	8.3	6.3	6.7	2.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3953)
Gram_pos_anchor	PF00746.21	gi|336255249|ref|YP_004598356.1|	-	4.3	7.4	7.5	1.5	8.8	1.8	2.0	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
Lactamase_B	PF00753.27	gi|336255250|ref|YP_004598357.1|	-	4.9e-23	82.2	10.6	5.9e-23	81.9	10.6	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336255250|ref|YP_004598357.1|	-	1.7e-06	27.7	0.7	2.5e-06	27.1	0.7	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DsbD	PF02683.15	gi|336255251|ref|YP_004598358.1|	-	2.7e-11	43.8	12.3	3.5e-11	43.4	12.3	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.6	gi|336255251|ref|YP_004598358.1|	-	0.38	10.7	17.8	3.4	7.5	17.7	2.3	1	1	0	1	1	1	0	Cytochrome	C	biogenesis	protein	transmembrane	region
LMBR1	PF04791.16	gi|336255251|ref|YP_004598358.1|	-	1.9	7.3	5.1	0.4	9.5	1.4	1.6	2	0	0	2	2	2	0	LMBR1-like	membrane	protein
Redoxin	PF08534.10	gi|336255252|ref|YP_004598359.1|	-	0.00036	20.3	0.0	0.00047	19.9	0.0	1.2	1	0	0	1	1	1	1	Redoxin
TAT_signal	PF10518.9	gi|336255252|ref|YP_004598359.1|	-	0.35	10.8	2.7	0.74	9.8	2.7	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Lactamase_B	PF00753.27	gi|336255253|ref|YP_004598360.1|	-	6.4e-25	88.3	7.8	6.4e-25	88.3	7.8	2.3	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336255253|ref|YP_004598360.1|	-	4.1e-06	26.5	1.9	7.2e-06	25.6	0.5	2.1	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336255253|ref|YP_004598360.1|	-	0.14	12.0	0.1	0.48	10.3	0.0	2.1	2	0	0	2	2	2	0	Beta-lactamase	superfamily	domain
GatB_N	PF02934.15	gi|336255255|ref|YP_004598362.1|	-	3.5e-99	331.6	0.0	5.5e-99	331.0	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|336255255|ref|YP_004598362.1|	-	1.4e-41	141.8	0.3	2.3e-41	141.1	0.0	1.5	2	0	0	2	2	2	1	GatB	domain
DUF3046	PF11248.8	gi|336255255|ref|YP_004598362.1|	-	0.052	13.9	0.1	0.33	11.4	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3046)
TAT_signal	PF10518.9	gi|336255256|ref|YP_004598363.1|	-	0.033	14.1	1.2	0.051	13.4	1.2	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SDF	PF00375.18	gi|336255257|ref|YP_004598364.1|	-	9.6e-113	377.1	36.0	1.1e-112	377.0	36.0	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
DUF1358	PF07096.11	gi|336255257|ref|YP_004598364.1|	-	0.034	14.1	0.9	0.11	12.5	0.9	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1358)
BPD_transp_1	PF00528.22	gi|336255258|ref|YP_004598365.1|	-	5.3e-15	55.6	10.9	7.7e-15	55.1	10.9	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3104	PF11302.8	gi|336255258|ref|YP_004598365.1|	-	0.19	11.4	1.4	0.85	9.4	0.1	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3104)
BPD_transp_1	PF00528.22	gi|336255259|ref|YP_004598366.1|	-	6.2e-17	61.9	10.6	1.2e-16	61.0	10.6	1.5	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
Rossmann-like	PF10727.9	gi|336255259|ref|YP_004598366.1|	-	0.048	13.5	0.5	0.13	12.2	0.5	1.7	1	0	0	1	1	1	0	Rossmann-like	domain
MotA_ExbB	PF01618.16	gi|336255259|ref|YP_004598366.1|	-	0.19	11.5	3.6	0.21	11.3	0.2	2.4	2	0	0	2	2	2	0	MotA/TolQ/ExbB	proton	channel	family
ThiF	PF00899.21	gi|336255259|ref|YP_004598366.1|	-	0.46	9.8	2.8	0.51	9.7	1.5	1.7	1	1	1	2	2	2	0	ThiF	family
ABC_tran	PF00005.27	gi|336255260|ref|YP_004598367.1|	-	5.7e-37	127.3	0.0	7.5e-37	126.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336255260|ref|YP_004598367.1|	-	1.5e-07	31.6	0.0	0.003	17.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336255260|ref|YP_004598367.1|	-	0.00046	20.5	0.1	0.0057	16.9	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336255260|ref|YP_004598367.1|	-	0.0012	18.5	0.0	0.0023	17.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|336255260|ref|YP_004598367.1|	-	0.0019	18.4	0.0	0.0079	16.4	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255260|ref|YP_004598367.1|	-	0.0024	17.8	0.1	0.0098	15.8	0.0	1.8	2	0	0	2	2	2	1	RsgA	GTPase
Mg_chelatase	PF01078.21	gi|336255260|ref|YP_004598367.1|	-	0.0062	15.9	0.0	0.01	15.2	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|336255260|ref|YP_004598367.1|	-	0.0071	16.7	0.1	0.022	15.2	0.1	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|336255260|ref|YP_004598367.1|	-	0.017	14.8	0.1	0.053	13.2	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|336255260|ref|YP_004598367.1|	-	0.022	15.0	0.1	0.37	11.1	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MMR_HSR1	PF01926.23	gi|336255260|ref|YP_004598367.1|	-	0.032	14.3	0.0	0.65	10.1	0.0	2.3	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA	PF00004.29	gi|336255260|ref|YP_004598367.1|	-	0.06	13.8	0.0	3.7	8.0	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|336255260|ref|YP_004598367.1|	-	0.15	11.5	0.1	16	4.9	0.0	2.1	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|336255260|ref|YP_004598367.1|	-	0.17	12.4	0.0	0.3	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Phosphonate-bd	PF12974.7	gi|336255261|ref|YP_004598368.1|	-	3.5e-50	170.9	0.0	4.6e-50	170.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_11	PF13531.6	gi|336255261|ref|YP_004598368.1|	-	0.019	14.7	0.0	0.034	13.9	0.0	1.5	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
OpuAC	PF04069.12	gi|336255261|ref|YP_004598368.1|	-	0.026	14.1	0.0	0.12	11.9	0.0	1.9	1	1	0	2	2	2	0	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
PT-VENN	PF04829.13	gi|336255261|ref|YP_004598368.1|	-	8	6.6	7.0	11	6.2	1.1	2.8	3	0	0	3	3	3	0	Pre-toxin	domain	with	VENN	motif
AMP-binding	PF00501.28	gi|336255262|ref|YP_004598369.1|	-	1.7e-76	257.5	0.0	2.4e-76	257.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|336255262|ref|YP_004598369.1|	-	2.7e-24	85.9	0.2	5.9e-24	84.9	0.2	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|336255262|ref|YP_004598369.1|	-	4.7e-10	39.2	0.0	4.7e-10	39.2	0.0	3.8	4	0	0	4	4	4	1	Acetyl-coenzyme	A	synthetase	N-terminus
SlyX	PF04102.12	gi|336255263|ref|YP_004598370.1|	-	0.00016	22.2	3.9	0.00025	21.6	3.9	1.6	1	1	0	1	1	1	1	SlyX
Tropomyosin	PF00261.20	gi|336255263|ref|YP_004598370.1|	-	0.00025	20.5	1.1	0.00025	20.5	1.1	2.0	2	0	0	2	2	2	1	Tropomyosin
Lebercilin	PF15619.6	gi|336255263|ref|YP_004598370.1|	-	0.0057	16.3	0.6	0.0068	16.1	0.6	1.1	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
IFT57	PF10498.9	gi|336255263|ref|YP_004598370.1|	-	0.0076	15.3	0.1	0.0079	15.2	0.1	1.1	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
Striatin	PF08232.12	gi|336255263|ref|YP_004598370.1|	-	0.026	15.1	1.4	0.031	14.9	1.4	1.1	1	0	0	1	1	1	0	Striatin	family
Herpes_UL6	PF01763.16	gi|336255263|ref|YP_004598370.1|	-	0.034	12.7	0.2	0.036	12.6	0.2	1.0	1	0	0	1	1	1	0	Herpesvirus	UL6	like
DUF4407	PF14362.6	gi|336255263|ref|YP_004598370.1|	-	0.05	13.0	4.9	0.057	12.8	4.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TMF_DNA_bd	PF12329.8	gi|336255263|ref|YP_004598370.1|	-	0.098	12.7	1.3	0.18	11.8	1.3	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
IFP_35_N	PF07334.13	gi|336255263|ref|YP_004598370.1|	-	0.12	12.4	0.1	0.2	11.8	0.1	1.5	1	0	0	1	1	1	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
MscS_porin	PF12795.7	gi|336255263|ref|YP_004598370.1|	-	0.14	11.7	6.0	0.17	11.4	0.8	1.9	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
bZIP_1	PF00170.21	gi|336255263|ref|YP_004598370.1|	-	0.14	12.3	0.8	0.2	11.8	0.8	1.2	1	0	0	1	1	1	0	bZIP	transcription	factor
SKA1	PF07160.12	gi|336255263|ref|YP_004598370.1|	-	0.16	11.8	0.6	0.21	11.4	0.6	1.2	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
PspB	PF06667.12	gi|336255263|ref|YP_004598370.1|	-	0.18	11.9	1.2	0.48	10.5	1.2	1.7	1	1	0	1	1	1	0	Phage	shock	protein	B
FlaC_arch	PF05377.11	gi|336255263|ref|YP_004598370.1|	-	0.18	12.2	1.0	0.32	11.4	1.0	1.3	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
Spc7	PF08317.11	gi|336255263|ref|YP_004598370.1|	-	0.25	10.2	2.8	0.32	9.8	2.8	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
CCDC53	PF10152.9	gi|336255263|ref|YP_004598370.1|	-	0.59	10.5	5.2	0.8	10.1	5.2	1.1	1	0	0	1	1	1	0	Subunit	CCDC53	of	WASH	complex
LPP	PF04728.13	gi|336255263|ref|YP_004598370.1|	-	1.2	9.6	0.1	1.2	9.6	0.1	2.4	2	1	0	2	2	1	0	Lipoprotein	leucine-zipper
DUF4140	PF13600.6	gi|336255263|ref|YP_004598370.1|	-	3.9	8.0	10.1	0.64	10.5	0.9	2.1	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
ABC_tran_CTD	PF16326.5	gi|336255263|ref|YP_004598370.1|	-	5.6	7.3	10.1	2.6e+02	2.0	10.1	2.4	1	1	0	1	1	1	0	ABC	transporter	C-terminal	domain
SMC_N	PF02463.19	gi|336255264|ref|YP_004598371.1|	-	6.9e-41	140.1	85.0	7.6e-40	136.7	85.0	2.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|336255264|ref|YP_004598371.1|	-	1e-30	106.4	0.0	2.9e-30	105.0	0.0	1.9	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_23	PF13476.6	gi|336255264|ref|YP_004598371.1|	-	2.2e-13	51.1	24.4	2.2e-13	51.1	24.4	9.3	2	2	1	3	3	1	1	AAA	domain
AAA_21	PF13304.6	gi|336255264|ref|YP_004598371.1|	-	2.1e-12	47.5	0.1	1.1e-06	28.7	0.0	5.7	4	2	2	6	6	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|336255264|ref|YP_004598371.1|	-	6.5e-09	35.0	115.6	0.011	14.4	29.4	6.1	3	2	3	6	6	6	5	AAA	domain
AAA_15	PF13175.6	gi|336255264|ref|YP_004598371.1|	-	1.6e-08	34.7	17.2	1.6e-08	34.7	17.2	5.2	2	2	1	4	4	2	2	AAA	ATPase	domain
Atg14	PF10186.9	gi|336255264|ref|YP_004598371.1|	-	4.1e-08	32.7	99.8	0.0077	15.4	16.4	7.3	2	2	5	7	7	7	5	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF3584	PF12128.8	gi|336255264|ref|YP_004598371.1|	-	4.5e-08	31.2	66.4	2.9e-07	28.5	53.5	4.1	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF3584)
Spc7	PF08317.11	gi|336255264|ref|YP_004598371.1|	-	6.6e-08	31.8	158.3	0.011	14.7	29.1	9.0	2	2	5	8	8	8	5	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|336255264|ref|YP_004598371.1|	-	1.9e-06	27.5	0.4	8.7e-06	25.4	0.0	2.1	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF1664	PF07889.12	gi|336255264|ref|YP_004598371.1|	-	3.2e-06	27.2	87.7	0.00077	19.5	5.2	10.1	3	2	6	11	11	11	7	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.12	gi|336255264|ref|YP_004598371.1|	-	7.5e-05	23.1	55.6	0.014	15.9	2.9	10.5	5	2	5	11	11	9	3	Nucleopolyhedrovirus	P10	protein
EzrA	PF06160.12	gi|336255264|ref|YP_004598371.1|	-	0.0001	20.6	19.8	0.0001	20.6	19.8	5.2	2	2	3	5	5	5	2	Septation	ring	formation	regulator,	EzrA
ZapB	PF06005.12	gi|336255264|ref|YP_004598371.1|	-	0.00025	21.4	6.4	0.00025	21.4	6.4	13.2	4	3	6	10	10	7	2	Cell	division	protein	ZapB
TMPIT	PF07851.13	gi|336255264|ref|YP_004598371.1|	-	0.00038	19.8	5.0	0.00038	19.8	5.0	7.9	2	2	6	8	8	8	3	TMPIT-like	protein
DUF4407	PF14362.6	gi|336255264|ref|YP_004598371.1|	-	0.00081	18.8	105.9	0.015	14.6	16.3	6.2	2	2	3	5	5	5	2	Domain	of	unknown	function	(DUF4407)
GAS	PF13851.6	gi|336255264|ref|YP_004598371.1|	-	0.00089	18.7	20.1	0.00089	18.7	20.1	8.5	3	2	4	8	8	8	4	Growth-arrest	specific	micro-tubule	binding
CENP-F_leu_zip	PF10473.9	gi|336255264|ref|YP_004598371.1|	-	0.00091	19.3	178.1	0.04	13.9	24.1	9.1	2	2	7	9	9	9	4	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3450	PF11932.8	gi|336255264|ref|YP_004598371.1|	-	0.0012	18.2	8.1	0.0012	18.2	8.1	9.6	3	2	7	10	10	9	1	Protein	of	unknown	function	(DUF3450)
Laminin_II	PF06009.12	gi|336255264|ref|YP_004598371.1|	-	0.0028	17.7	5.0	0.0028	17.7	5.0	9.1	5	2	5	11	11	10	3	Laminin	Domain	II
ATG16	PF08614.11	gi|336255264|ref|YP_004598371.1|	-	0.0029	17.9	25.7	0.0029	17.9	25.7	9.1	2	2	5	8	8	8	3	Autophagy	protein	16	(ATG16)
UPF0242	PF06785.11	gi|336255264|ref|YP_004598371.1|	-	0.0043	17.2	159.1	0.26	11.4	28.6	7.6	3	2	4	7	7	7	4	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF724	PF05266.14	gi|336255264|ref|YP_004598371.1|	-	0.0059	16.5	18.3	0.0059	16.5	18.3	7.8	3	2	5	8	8	8	3	Protein	of	unknown	function	(DUF724)
TolA_bind_tri	PF16331.5	gi|336255264|ref|YP_004598371.1|	-	0.0094	16.0	2.8	0.0094	16.0	2.8	9.8	6	4	4	11	11	9	1	TolA	binding	protein	trimerisation
Baculo_PEP_C	PF04513.12	gi|336255264|ref|YP_004598371.1|	-	0.034	14.2	34.5	0.64	10.0	4.1	7.2	4	2	3	7	7	7	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
APG6_N	PF17675.1	gi|336255264|ref|YP_004598371.1|	-	0.062	13.8	193.7	0.44	11.1	25.2	9.3	3	2	5	8	8	8	0	Apg6	coiled-coil	region
T3SSipB	PF16535.5	gi|336255264|ref|YP_004598371.1|	-	0.066	13.7	79.5	0.69	10.4	5.6	9.8	3	2	7	10	10	10	0	Type	III	cell	invasion	protein	SipB
DUF5082	PF16888.5	gi|336255264|ref|YP_004598371.1|	-	0.087	13.1	112.4	2.6	8.4	6.4	10.1	4	2	1	6	6	6	0	Domain	of	unknown	function	(DUF5082)
Fib_alpha	PF08702.10	gi|336255264|ref|YP_004598371.1|	-	0.098	12.8	83.4	0.41	10.8	10.3	7.7	3	2	4	7	7	7	0	Fibrinogen	alpha/beta	chain	family
Fez1	PF06818.15	gi|336255264|ref|YP_004598371.1|	-	0.26	11.7	142.2	0.018	15.5	16.1	7.5	2	2	3	5	5	4	0	Fez1
MscS_porin	PF12795.7	gi|336255264|ref|YP_004598371.1|	-	0.69	9.4	118.1	0.015	14.9	22.1	6.5	3	2	2	6	6	5	0	Mechanosensitive	ion	channel	porin	domain
DUF745	PF05335.13	gi|336255264|ref|YP_004598371.1|	-	0.83	9.3	76.3	0.016	15.0	13.7	6.6	5	3	1	6	6	6	0	Protein	of	unknown	function	(DUF745)
LPP	PF04728.13	gi|336255264|ref|YP_004598371.1|	-	0.88	10.0	54.9	8.8	6.8	0.4	11.6	8	4	3	11	11	10	0	Lipoprotein	leucine-zipper
Prominin	PF05478.11	gi|336255264|ref|YP_004598371.1|	-	0.92	7.4	58.9	0.0067	14.5	3.4	4.7	2	2	2	4	4	4	0	Prominin
TPR_MLP1_2	PF07926.12	gi|336255264|ref|YP_004598371.1|	-	5.2	7.1	153.3	0.034	14.2	15.2	9.6	3	2	6	9	9	9	0	TPR/MLP1/MLP2-like	protein
SMC_ScpA	PF02616.14	gi|336255265|ref|YP_004598372.1|	-	1e-13	51.7	0.0	7.1e-09	35.9	0.0	2.3	2	0	0	2	2	2	2	Segregation	and	condensation	protein	ScpA
Rad21_Rec8	PF04824.16	gi|336255265|ref|YP_004598372.1|	-	0.17	11.2	0.0	0.31	10.4	0.0	1.3	1	0	0	1	1	1	0	Conserved	region	of	Rad21	/	Rec8	like	protein
DUF4131	PF13567.6	gi|336255266|ref|YP_004598373.1|	-	0.029	14.0	1.7	0.046	13.4	1.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
zinc_ribbon_15	PF17032.5	gi|336255266|ref|YP_004598373.1|	-	0.13	13.0	0.0	0.27	12.0	0.0	1.6	2	0	0	2	2	2	0	zinc-ribbon	family
UPF0370	PF13980.6	gi|336255266|ref|YP_004598373.1|	-	0.42	10.7	1.2	0.75	9.9	1.2	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0370)
MCPsignal	PF00015.21	gi|336255267|ref|YP_004598374.1|	-	6e-38	130.3	56.2	2.1e-35	122.1	26.7	3.3	1	1	2	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS	PF00989.25	gi|336255267|ref|YP_004598374.1|	-	2.6e-13	49.9	0.0	1.1e-12	48.0	0.0	2.1	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|336255267|ref|YP_004598374.1|	-	3e-12	46.8	0.5	3e-12	46.8	0.5	2.2	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|336255267|ref|YP_004598374.1|	-	1.2e-10	41.6	0.1	5.9e-10	39.3	0.0	2.3	2	1	1	3	3	2	1	PAS	domain
PAS_8	PF13188.7	gi|336255267|ref|YP_004598374.1|	-	4e-05	23.5	0.0	0.00026	20.9	0.0	2.5	1	1	0	1	1	1	1	PAS	domain
DUF948	PF06103.11	gi|336255267|ref|YP_004598374.1|	-	0.0021	18.3	40.6	0.28	11.4	5.4	5.5	1	1	2	3	3	2	2	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|336255267|ref|YP_004598374.1|	-	0.0031	17.5	36.6	0.097	12.7	6.6	4.3	1	1	2	4	4	4	3	Laminin	Domain	II
DUF1664	PF07889.12	gi|336255267|ref|YP_004598374.1|	-	0.011	15.8	35.4	1.6	8.8	4.9	4.5	1	1	4	5	5	5	0	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.12	gi|336255267|ref|YP_004598374.1|	-	0.028	14.9	1.9	0.028	14.9	1.9	5.5	2	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
SesA	PF17107.5	gi|336255267|ref|YP_004598374.1|	-	0.034	14.3	22.2	0.047	13.9	2.0	3.7	1	1	2	3	3	3	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
GAS	PF13851.6	gi|336255267|ref|YP_004598374.1|	-	0.047	13.0	16.6	0.27	10.6	6.9	2.2	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
BLOC1_2	PF10046.9	gi|336255267|ref|YP_004598374.1|	-	0.055	13.8	27.4	2.2	8.7	1.7	5.0	1	1	4	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
KxDL	PF10241.9	gi|336255267|ref|YP_004598374.1|	-	0.072	13.4	12.7	0.62	10.4	0.7	4.6	1	1	3	6	6	6	0	Uncharacterized	conserved	protein
Prominin	PF05478.11	gi|336255267|ref|YP_004598374.1|	-	0.1	10.6	20.1	0.29	9.0	12.6	2.0	1	1	1	2	2	2	0	Prominin
TMPIT	PF07851.13	gi|336255267|ref|YP_004598374.1|	-	0.12	11.6	17.6	0.081	12.2	0.7	3.2	1	1	3	4	4	4	0	TMPIT-like	protein
Fib_alpha	PF08702.10	gi|336255267|ref|YP_004598374.1|	-	0.56	10.4	24.0	0.39	10.9	5.7	4.0	1	1	3	4	4	4	0	Fibrinogen	alpha/beta	chain	family
CdvA	PF18822.1	gi|336255267|ref|YP_004598374.1|	-	0.66	9.8	18.4	1	9.2	5.3	3.9	2	2	0	3	3	3	0	CdvA-like	coiled-coil	domain
PHP_C	PF13263.6	gi|336255267|ref|YP_004598374.1|	-	0.98	9.2	7.6	0.58	10.0	0.3	3.7	3	0	0	3	3	3	0	PHP-associated
T3SSipB	PF16535.5	gi|336255267|ref|YP_004598374.1|	-	0.99	9.9	33.8	2.5	8.6	1.6	3.2	1	1	2	3	3	3	0	Type	III	cell	invasion	protein	SipB
Vip3A_N	PF12495.8	gi|336255267|ref|YP_004598374.1|	-	1.1	9.1	8.4	0.71	9.7	0.2	3.1	1	1	3	4	4	4	0	Vegetative	insecticide	protein	3A	N	terminal
DUF4559	PF15112.6	gi|336255267|ref|YP_004598374.1|	-	1.3	8.6	25.2	2.3	7.8	10.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4559)
DUF883	PF05957.13	gi|336255267|ref|YP_004598374.1|	-	1.4	9.6	35.2	0.19	12.4	6.7	4.7	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
Dor1	PF04124.12	gi|336255267|ref|YP_004598374.1|	-	1.8	7.2	21.2	0.41	9.3	10.3	2.9	2	2	0	2	2	2	0	Dor1-like	family
Spc7	PF08317.11	gi|336255267|ref|YP_004598374.1|	-	3.3	6.5	35.5	1	8.2	11.7	3.1	1	1	2	3	3	3	0	Spc7	kinetochore	protein
FUSC	PF04632.12	gi|336255267|ref|YP_004598374.1|	-	3.4	6.1	18.1	1.9	6.9	7.4	2.2	1	1	0	2	2	2	0	Fusaric	acid	resistance	protein	family
ING	PF12998.7	gi|336255267|ref|YP_004598374.1|	-	4.7	7.9	12.4	15	6.2	1.4	3.8	1	1	2	3	3	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
ApoO	PF09769.9	gi|336255267|ref|YP_004598374.1|	-	5.2	7.1	13.0	1.4	8.9	0.4	3.8	2	2	1	4	4	4	0	Apolipoprotein	O
YkyA	PF10368.9	gi|336255267|ref|YP_004598374.1|	-	5.2	6.7	34.6	2.7	7.6	11.8	3.5	1	1	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
Laminin_I	PF06008.14	gi|336255267|ref|YP_004598374.1|	-	5.5	6.6	37.0	2.6	7.7	14.4	3.8	1	1	3	4	4	4	0	Laminin	Domain	I
APG17	PF04108.12	gi|336255267|ref|YP_004598374.1|	-	6.3	5.8	30.0	4.6	6.3	4.3	3.5	1	1	2	3	3	3	0	Autophagy	protein	Apg17
Rx_N	PF18052.1	gi|336255267|ref|YP_004598374.1|	-	6.6	7.1	27.0	0.47	10.8	5.8	5.1	1	1	3	5	5	5	0	Rx	N-terminal	domain
Spectrin	PF00435.21	gi|336255267|ref|YP_004598374.1|	-	6.6	7.3	25.4	1.2	9.6	2.1	4.5	1	1	4	5	5	5	0	Spectrin	repeat
Syntaxin-6_N	PF09177.11	gi|336255267|ref|YP_004598374.1|	-	8.3	7.0	30.0	1.3	9.6	3.4	4.3	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
AIP3	PF03915.13	gi|336255267|ref|YP_004598374.1|	-	9.2	5.2	32.6	10	5.1	10.7	2.7	1	1	1	2	2	2	0	Actin	interacting	protein	3
DUF745	PF05335.13	gi|336255267|ref|YP_004598374.1|	-	9.4	5.9	37.9	1.5	8.6	7.1	4.0	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF745)
PNP_UDP_1	PF01048.20	gi|336255268|ref|YP_004598375.1|	-	1.3e-45	155.5	0.2	1.5e-45	155.3	0.2	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
MatE	PF01554.18	gi|336255269|ref|YP_004598376.1|	-	1.1e-54	184.4	35.6	4e-30	104.6	8.7	2.8	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|336255269|ref|YP_004598376.1|	-	6.4e-12	45.7	21.2	6.3e-11	42.5	4.4	4.4	4	2	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336255269|ref|YP_004598376.1|	-	8.9e-06	24.6	8.0	8.9e-06	24.6	8.0	2.4	1	1	1	2	2	2	1	Lipid	II	flippase	MurJ
DUF4191	PF13829.6	gi|336255269|ref|YP_004598376.1|	-	1.3	8.3	6.8	0.18	11.1	2.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4191)
DUF2070	PF09843.9	gi|336255269|ref|YP_004598376.1|	-	1.5	7.0	20.4	0.058	11.7	10.2	2.4	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2070)
Hydrolase	PF00702.26	gi|336255270|ref|YP_004598377.1|	-	1.2e-36	127.0	1.3	1.2e-36	127.0	1.3	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.20	gi|336255270|ref|YP_004598377.1|	-	1.1e-35	122.8	4.0	1.1e-35	122.8	4.0	2.3	2	0	0	2	2	2	1	E1-E2	ATPase
HMA	PF00403.26	gi|336255270|ref|YP_004598377.1|	-	2.1e-09	37.7	0.0	1e-08	35.5	0.0	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Rad50_zn_hook	PF04423.14	gi|336255270|ref|YP_004598377.1|	-	0.018	14.9	0.2	0.031	14.1	0.2	1.3	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
HAD	PF12710.7	gi|336255270|ref|YP_004598377.1|	-	0.036	14.5	0.8	0.31	11.4	0.0	2.9	2	1	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|336255270|ref|YP_004598377.1|	-	0.055	13.2	0.0	0.28	10.9	0.1	1.9	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Pribosyltran	PF00156.27	gi|336255271|ref|YP_004598378.1|	-	1.6e-17	63.5	0.0	2.2e-17	63.0	0.0	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|336255271|ref|YP_004598378.1|	-	0.0024	17.3	0.0	0.0033	16.9	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Trypsin_2	PF13365.6	gi|336255272|ref|YP_004598379.1|	-	0.019	15.9	2.5	0.068	14.1	2.5	2.0	1	1	0	1	1	1	0	Trypsin-like	peptidase	domain
Peptidase_S32	PF05579.13	gi|336255272|ref|YP_004598379.1|	-	0.023	13.9	0.1	0.052	12.7	0.1	1.5	2	0	0	2	2	2	0	Equine	arteritis	virus	serine	endopeptidase	S32
Trypsin	PF00089.26	gi|336255272|ref|YP_004598379.1|	-	0.037	13.8	0.0	0.062	13.1	0.0	1.3	1	0	0	1	1	1	0	Trypsin
ThiC_Rad_SAM	PF01964.18	gi|336255273|ref|YP_004598380.1|	-	3.9e-193	641.9	0.1	4.5e-193	641.7	0.1	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
zinc_ribbon_2	PF13240.6	gi|336255273|ref|YP_004598380.1|	-	0.15	11.8	0.2	0.3	10.9	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
HTH_10	PF04967.12	gi|336255274|ref|YP_004598381.1|	-	1.3e-15	56.9	0.6	2.4e-15	56.1	0.6	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
CPBP	PF02517.16	gi|336255275|ref|YP_004598382.1|	-	1.1e-10	41.8	12.4	2.6e-10	40.5	12.4	1.9	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
PhzC-PhzF	PF02567.16	gi|336255276|ref|YP_004598383.1|	-	2.1e-67	227.5	0.0	2.4e-67	227.3	0.0	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
Pro_racemase	PF05544.11	gi|336255276|ref|YP_004598383.1|	-	0.00049	19.3	0.0	0.00073	18.7	0.0	1.2	1	0	0	1	1	1	1	Proline	racemase
PPDK_N	PF01326.19	gi|336255277|ref|YP_004598384.1|	-	8.3e-108	360.5	0.0	1.3e-107	359.9	0.0	1.3	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|336255277|ref|YP_004598384.1|	-	3.7e-82	275.7	0.1	5.8e-82	275.1	0.1	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|336255277|ref|YP_004598384.1|	-	1.4e-27	95.2	2.7	3.6e-27	93.9	2.7	1.8	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
RdRP	PF05183.12	gi|336255277|ref|YP_004598384.1|	-	0.0025	16.5	0.0	0.032	12.9	0.0	2.1	2	0	0	2	2	2	1	RNA	dependent	RNA	polymerase
Epimerase_2	PF02350.19	gi|336255277|ref|YP_004598384.1|	-	0.044	12.6	0.1	0.17	10.7	0.1	2.0	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
UBM	PF14377.6	gi|336255277|ref|YP_004598384.1|	-	0.06	12.8	0.8	0.18	11.3	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin	binding	region
Glyoxalase	PF00903.25	gi|336255278|ref|YP_004598385.1|	-	4.5e-16	59.2	0.4	3.5e-08	33.7	0.0	2.4	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|336255278|ref|YP_004598385.1|	-	3.4e-08	34.2	6.6	0.00067	20.4	0.2	2.4	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|336255278|ref|YP_004598385.1|	-	0.0067	16.6	7.3	1.3	9.1	0.1	3.4	2	2	1	3	3	3	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|336255278|ref|YP_004598385.1|	-	0.014	15.7	0.1	6.3	7.1	0.0	3.3	2	2	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
CppA_C	PF14507.6	gi|336255278|ref|YP_004598385.1|	-	0.091	13.5	0.0	0.25	12.1	0.0	1.8	2	1	0	2	2	2	0	CppA	C-terminal
Glyco_tranf_2_3	PF13641.6	gi|336255279|ref|YP_004598386.1|	-	2.8e-22	79.7	1.1	4.2e-22	79.2	1.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|336255279|ref|YP_004598386.1|	-	1.7e-18	67.0	0.0	2.2e-18	66.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|336255279|ref|YP_004598386.1|	-	1.3e-14	54.6	0.8	2.7e-14	53.6	0.8	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|336255279|ref|YP_004598386.1|	-	5.1e-11	42.3	0.0	7.9e-11	41.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Pyridoxal_deC	PF00282.19	gi|336255280|ref|YP_004598387.1|	-	1.1e-26	93.5	0.0	5.4e-26	91.2	0.0	1.9	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|336255280|ref|YP_004598387.1|	-	5.4e-12	45.4	0.0	6.9e-12	45.0	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
SHMT	PF00464.19	gi|336255280|ref|YP_004598387.1|	-	0.0047	15.6	0.0	0.0094	14.6	0.0	1.4	1	1	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.21	gi|336255280|ref|YP_004598387.1|	-	0.01	15.2	0.0	0.017	14.4	0.0	1.4	1	1	0	1	1	1	0	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|336255280|ref|YP_004598387.1|	-	0.013	14.9	0.1	0.019	14.3	0.1	1.2	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
TIR_2	PF13676.6	gi|336255280|ref|YP_004598387.1|	-	0.19	12.4	0.0	0.33	11.6	0.0	1.4	1	0	0	1	1	1	0	TIR	domain
SepSecS	PF05889.13	gi|336255280|ref|YP_004598387.1|	-	0.24	10.0	0.0	0.35	9.5	0.0	1.1	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
CoA_binding_3	PF13727.6	gi|336255281|ref|YP_004598388.1|	-	2.1	8.3	6.4	1.3	9.0	5.1	1.4	1	1	0	1	1	1	0	CoA-binding	domain
tRNA-synt_1g	PF09334.11	gi|336255282|ref|YP_004598389.1|	-	1.6e-147	491.4	0.0	2e-147	491.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.20	gi|336255282|ref|YP_004598389.1|	-	1.2e-20	73.4	0.1	2.1e-20	72.6	0.1	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.22	gi|336255282|ref|YP_004598389.1|	-	1.3e-14	53.4	0.8	5.4e-08	31.6	0.2	3.0	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1e	PF01406.19	gi|336255282|ref|YP_004598389.1|	-	1e-09	38.2	0.0	9.5e-07	28.4	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Anticodon_1	PF08264.13	gi|336255282|ref|YP_004598389.1|	-	2.3e-07	30.9	0.0	4.2e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.18	gi|336255282|ref|YP_004598389.1|	-	0.00091	18.2	0.1	0.43	9.4	0.0	3.1	2	1	1	3	3	3	1	tRNA	synthetases	class	I	(K)
Borrelia_P83	PF05262.11	gi|336255282|ref|YP_004598389.1|	-	4.8	5.6	7.3	4.4	5.7	3.1	2.1	2	0	0	2	2	2	0	Borrelia	P83/100	protein
Pes-10	PF07149.11	gi|336255282|ref|YP_004598389.1|	-	8.6	5.3	13.3	13	4.7	13.3	1.2	1	0	0	1	1	1	0	Pes-10
Beta-lactamase	PF00144.24	gi|336255283|ref|YP_004598390.1|	-	4.4e-64	216.8	0.9	7.8e-64	216.0	0.9	1.3	1	0	0	1	1	1	1	Beta-lactamase
Beta-lactamase2	PF13354.6	gi|336255283|ref|YP_004598390.1|	-	0.0039	16.8	0.0	0.98	9.0	0.0	2.3	2	0	0	2	2	2	2	Beta-lactamase	enzyme	family
Chloroa_b-bind	PF00504.21	gi|336255283|ref|YP_004598390.1|	-	0.15	12.5	1.5	12	6.4	0.2	3.0	2	1	1	3	3	3	0	Chlorophyll	A-B	binding	protein
GYD	PF08734.11	gi|336255284|ref|YP_004598391.1|	-	1.9e-17	63.0	0.1	2.1e-17	62.9	0.1	1.0	1	0	0	1	1	1	1	GYD	domain
PK	PF00224.21	gi|336255285|ref|YP_004598392.1|	-	1.6e-117	392.3	3.6	2.1e-117	391.9	3.6	1.2	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|336255285|ref|YP_004598392.1|	-	3.4e-30	104.7	0.6	8.1e-30	103.4	0.6	1.7	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.23	gi|336255285|ref|YP_004598392.1|	-	5.6e-12	45.2	0.6	4.5e-11	42.3	0.1	2.8	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.14	gi|336255285|ref|YP_004598392.1|	-	0.00042	19.5	1.7	0.00042	19.5	1.7	2.2	1	1	1	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
DUF4645	PF15488.6	gi|336255286|ref|YP_004598393.1|	-	0.096	12.1	0.1	0.11	12.0	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4645)
Diphthami_syn_2	PF01902.17	gi|336255287|ref|YP_004598394.1|	-	2.1e-58	197.4	0.1	5e-58	196.2	0.1	1.5	1	1	0	1	1	1	1	Diphthamide	synthase
DUF373	PF04123.13	gi|336255288|ref|YP_004598395.1|	-	1.8e-112	376.1	12.4	2.3e-112	375.8	12.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Trypan_PARP	PF05887.11	gi|336255288|ref|YP_004598395.1|	-	0.0018	18.2	8.0	0.0018	18.2	8.0	1.9	2	0	0	2	2	2	1	Procyclic	acidic	repetitive	protein	(PARP)
Peptidase_S49	PF01343.18	gi|336255289|ref|YP_004598396.1|	-	2.2e-39	134.9	0.0	5.7e-39	133.5	0.0	1.6	2	0	0	2	2	2	1	Peptidase	family	S49
SDH_sah	PF01972.16	gi|336255289|ref|YP_004598396.1|	-	0.028	13.4	0.0	0.041	12.9	0.0	1.2	1	0	0	1	1	1	0	Serine	dehydrogenase	proteinase
DUF3742	PF12553.8	gi|336255289|ref|YP_004598396.1|	-	8	6.6	6.6	14	5.8	6.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
T3SSipB	PF16535.5	gi|336255290|ref|YP_004598397.1|	-	0.0068	16.9	12.2	0.0068	16.9	12.2	3.2	1	1	2	3	3	3	1	Type	III	cell	invasion	protein	SipB
DUF1771	PF08590.10	gi|336255290|ref|YP_004598397.1|	-	0.96	9.9	38.0	0.33	11.4	6.3	5.1	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF1771)
YtxH	PF12732.7	gi|336255290|ref|YP_004598397.1|	-	1.8	9.1	35.8	23	5.6	4.0	5.2	1	1	1	2	2	2	0	YtxH-like	protein
Laminin_II	PF06009.12	gi|336255290|ref|YP_004598397.1|	-	8.6	6.4	34.5	1.2	9.1	10.7	3.6	1	1	4	5	5	5	0	Laminin	Domain	II
Tubulin	PF00091.25	gi|336255291|ref|YP_004598398.1|	-	1.3e-25	90.7	0.1	2.4e-25	89.9	0.1	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|336255291|ref|YP_004598398.1|	-	2.3e-07	30.3	0.4	1e-06	28.2	0.2	2.0	2	1	0	2	2	2	1	Tubulin	like
GFO_IDH_MocA	PF01408.22	gi|336255292|ref|YP_004598399.1|	-	2.2e-16	60.8	0.0	3.7e-16	60.0	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336255292|ref|YP_004598399.1|	-	1.1e-11	44.8	0.1	2.8e-11	43.5	0.1	1.7	1	1	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
ox_reductase_C	PF08635.10	gi|336255292|ref|YP_004598399.1|	-	0.13	12.0	0.0	0.33	10.6	0.0	1.7	1	1	0	1	1	1	0	Putative	oxidoreductase	C	terminal	domain
Usp	PF00582.26	gi|336255294|ref|YP_004598401.1|	-	7.8e-30	104.2	1.8	7.8e-30	104.2	1.8	1.6	2	0	0	2	2	2	1	Universal	stress	protein	family
TPR_14	PF13428.6	gi|336255294|ref|YP_004598401.1|	-	0.2	12.6	0.6	0.2	12.6	0.6	1.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Zn-ribbon_8	PF09723.10	gi|336255295|ref|YP_004598402.1|	-	3.8e-06	26.9	1.4	4.6e-06	26.6	1.4	1.1	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|336255295|ref|YP_004598402.1|	-	0.00075	19.5	0.1	0.00084	19.3	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-dskA_traR	PF01258.17	gi|336255295|ref|YP_004598402.1|	-	0.0029	17.5	2.0	0.016	15.1	0.1	2.1	2	0	0	2	2	2	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|336255295|ref|YP_004598402.1|	-	0.012	15.6	4.7	0.5	10.4	0.3	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_4	PF14447.6	gi|336255295|ref|YP_004598402.1|	-	0.018	14.9	1.7	0.77	9.7	1.9	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-LITAF-like	PF10601.9	gi|336255295|ref|YP_004598402.1|	-	0.022	15.0	0.2	2.9	8.2	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-Di19	PF05605.12	gi|336255295|ref|YP_004598402.1|	-	0.023	15.0	0.6	1.6	9.1	0.0	2.1	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zinc_ribbon_9	PF14369.6	gi|336255295|ref|YP_004598402.1|	-	0.042	14.1	0.9	0.071	13.4	0.9	1.4	1	0	0	1	1	1	0	zinc-ribbon
Zn_Tnp_IS1595	PF12760.7	gi|336255295|ref|YP_004598402.1|	-	0.051	13.6	3.5	3.5	7.7	0.4	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336255295|ref|YP_004598402.1|	-	0.064	12.7	1.6	2.5	7.6	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
YacG	PF03884.14	gi|336255295|ref|YP_004598402.1|	-	0.12	12.1	1.8	4.4	7.1	2.7	2.0	1	1	1	2	2	2	0	DNA	gyrase	inhibitor	YacG
TF_Zn_Ribbon	PF08271.12	gi|336255295|ref|YP_004598402.1|	-	0.12	11.9	2.3	0.44	10.1	2.4	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
DiS_P_DiS	PF06750.13	gi|336255295|ref|YP_004598402.1|	-	0.15	12.2	0.4	2.8	8.1	0.1	2.0	1	1	1	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
zf-ACC	PF17848.1	gi|336255295|ref|YP_004598402.1|	-	0.15	12.1	0.7	6	7.0	0.0	2.3	2	1	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-H2C2_2	PF13465.6	gi|336255295|ref|YP_004598402.1|	-	0.26	11.8	1.5	10	6.7	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-Mss51	PF13824.6	gi|336255295|ref|YP_004598402.1|	-	0.41	10.8	2.8	8.7	6.5	0.2	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Lar_restr_allev	PF14354.6	gi|336255295|ref|YP_004598402.1|	-	0.71	10.3	4.1	3.2	8.2	0.8	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Glyoxalase	PF00903.25	gi|336255296|ref|YP_004598403.1|	-	2.6e-16	60.0	0.6	2.9e-16	59.8	0.6	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|336255296|ref|YP_004598403.1|	-	1.7e-13	50.8	0.2	9.8e-09	35.5	0.1	1.8	1	1	1	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.7	gi|336255296|ref|YP_004598403.1|	-	2.4e-07	30.7	0.0	3.3e-07	30.3	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|336255296|ref|YP_004598403.1|	-	1.2e-06	29.2	0.2	1.6e-06	28.9	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|336255296|ref|YP_004598403.1|	-	1.1e-05	25.6	0.9	0.04	14.0	0.3	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Usp	PF00582.26	gi|336255297|ref|YP_004598404.1|	-	5.4e-17	62.6	1.1	6.9e-17	62.3	1.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
adh_short_C2	PF13561.6	gi|336255298|ref|YP_004598405.1|	-	1.1e-43	149.5	0.0	3.2e-43	148.0	0.0	1.6	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336255298|ref|YP_004598405.1|	-	1.2e-41	142.4	0.0	1.4e-41	142.1	0.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336255298|ref|YP_004598405.1|	-	3.2e-07	30.4	0.1	4.5e-07	29.9	0.1	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336255298|ref|YP_004598405.1|	-	0.016	14.6	0.3	0.057	12.9	0.1	1.9	1	1	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.15	gi|336255298|ref|YP_004598405.1|	-	0.11	11.5	0.0	0.14	11.3	0.0	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
THF_DHG_CYH_C	PF02882.19	gi|336255298|ref|YP_004598405.1|	-	0.15	11.4	0.3	0.28	10.5	0.1	1.6	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
BAT	PF15915.5	gi|336255299|ref|YP_004598406.1|	-	1.9e-24	86.3	1.2	1.9e-24	86.3	1.2	1.4	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336255299|ref|YP_004598406.1|	-	4.2e-13	48.9	0.0	8.3e-13	47.9	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_3	PF01381.22	gi|336255299|ref|YP_004598406.1|	-	0.016	15.3	0.0	0.028	14.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
Lig_C	PF18330.1	gi|336255299|ref|YP_004598406.1|	-	0.022	14.7	0.1	0.29	11.2	0.1	2.6	2	1	0	2	2	2	0	Ligase	Pab1020	C-terminal	region
HTH_24	PF13412.6	gi|336255299|ref|YP_004598406.1|	-	0.034	13.7	0.0	0.066	12.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
SatD	PF16264.5	gi|336255299|ref|YP_004598406.1|	-	0.05	13.2	0.1	0.12	12.0	0.0	1.6	2	0	0	2	2	2	0	SatD	family	(SatD)
Birna_RdRp	PF04197.12	gi|336255299|ref|YP_004598406.1|	-	0.06	11.7	0.0	0.2	10.0	0.0	1.7	2	0	0	2	2	2	0	Birnavirus	RNA	dependent	RNA	polymerase	(VP1)
MarR_2	PF12802.7	gi|336255299|ref|YP_004598406.1|	-	0.066	13.1	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DAO	PF01266.24	gi|336255301|ref|YP_004598408.1|	-	1.8e-56	192.3	7.7	2.1e-56	192.0	7.7	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|336255301|ref|YP_004598408.1|	-	2.2e-09	37.0	3.9	5.9e-09	35.6	3.9	1.6	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|336255301|ref|YP_004598408.1|	-	2.3e-07	30.4	0.4	0.00072	18.9	0.1	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|336255301|ref|YP_004598408.1|	-	2.3e-05	23.7	7.6	3.6e-05	23.1	7.6	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336255301|ref|YP_004598408.1|	-	0.0002	20.9	12.3	0.0015	18.0	12.3	2.2	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|336255301|ref|YP_004598408.1|	-	0.0024	18.1	2.1	0.008	16.4	1.8	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|336255301|ref|YP_004598408.1|	-	0.013	14.6	4.9	0.37	9.8	0.2	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
3HCDH_N	PF02737.18	gi|336255301|ref|YP_004598408.1|	-	0.016	15.1	0.8	0.025	14.5	0.1	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.14	gi|336255301|ref|YP_004598408.1|	-	0.018	13.8	2.0	0.19	10.4	1.2	2.0	2	0	0	2	2	2	0	HI0933-like	protein
Thi4	PF01946.17	gi|336255301|ref|YP_004598408.1|	-	0.021	14.1	0.4	0.021	14.1	0.4	2.2	2	1	0	2	2	2	0	Thi4	family
ApbA	PF02558.16	gi|336255301|ref|YP_004598408.1|	-	0.079	12.6	0.2	0.13	11.9	0.2	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_7	PF13241.6	gi|336255301|ref|YP_004598408.1|	-	0.096	13.1	0.0	0.35	11.3	0.0	1.9	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox	PF00070.27	gi|336255301|ref|YP_004598408.1|	-	0.11	13.1	0.3	0.64	10.6	0.5	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|336255301|ref|YP_004598408.1|	-	0.24	10.4	0.5	0.43	9.6	0.5	1.4	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|336255302|ref|YP_004598409.1|	-	9.9e-09	34.9	0.1	8.3e-08	31.9	0.1	2.2	1	1	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|336255302|ref|YP_004598409.1|	-	3.4e-08	32.9	0.0	1.6e-07	30.7	0.0	1.8	2	0	0	2	2	2	1	Lycopene	cyclase	protein
DAO	PF01266.24	gi|336255302|ref|YP_004598409.1|	-	4.2e-08	33.2	0.1	0.00035	20.2	0.0	2.4	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|336255302|ref|YP_004598409.1|	-	3.1e-07	29.6	0.0	0.005	15.7	0.0	2.6	3	0	0	3	3	3	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|336255302|ref|YP_004598409.1|	-	7.6e-06	25.4	0.0	1.4e-05	24.5	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|336255302|ref|YP_004598409.1|	-	2.4e-05	23.9	1.9	0.00035	20.0	1.9	2.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336255302|ref|YP_004598409.1|	-	8.2e-05	21.9	0.0	0.00026	20.2	0.0	1.8	1	1	1	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|336255302|ref|YP_004598409.1|	-	0.00016	21.0	0.1	0.00083	18.7	0.0	2.0	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.22	gi|336255302|ref|YP_004598409.1|	-	0.00044	19.5	0.0	0.25	10.4	0.0	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|336255302|ref|YP_004598409.1|	-	0.00056	18.7	0.0	0.0021	16.9	0.0	1.8	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|336255302|ref|YP_004598409.1|	-	0.0013	18.9	0.0	0.0041	17.3	0.0	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|336255302|ref|YP_004598409.1|	-	0.02	14.2	0.0	0.029	13.6	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|336255302|ref|YP_004598409.1|	-	0.16	12.2	0.0	0.33	11.2	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
XdhC_C	PF13478.6	gi|336255302|ref|YP_004598409.1|	-	0.18	12.3	0.2	0.8	10.2	0.0	2.1	3	0	0	3	3	2	0	XdhC	Rossmann	domain
HTH_24	PF13412.6	gi|336255303|ref|YP_004598410.1|	-	3.8e-11	42.4	0.0	7.1e-11	41.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336255303|ref|YP_004598410.1|	-	1.4e-10	40.9	1.3	6.2e-10	38.8	0.2	2.5	3	0	0	3	3	3	1	MarR	family
MarR	PF01047.22	gi|336255303|ref|YP_004598410.1|	-	2.7e-08	33.6	0.0	6.5e-08	32.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|336255303|ref|YP_004598410.1|	-	1.9e-06	27.7	0.1	4.3e-06	26.6	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336255303|ref|YP_004598410.1|	-	4.6e-06	27.0	0.1	1.4e-05	25.5	0.1	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|336255303|ref|YP_004598410.1|	-	1.6e-05	24.6	0.0	3.3e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336255303|ref|YP_004598410.1|	-	2.5e-05	24.1	0.0	4.1e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336255303|ref|YP_004598410.1|	-	3.2e-05	23.8	0.0	5.3e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_45	PF14947.6	gi|336255303|ref|YP_004598410.1|	-	9.2e-05	22.4	0.0	0.00014	21.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|336255303|ref|YP_004598410.1|	-	0.00012	22.1	0.1	0.00034	20.6	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Mnd1	PF03962.15	gi|336255303|ref|YP_004598410.1|	-	0.00014	22.0	0.1	0.00049	20.3	0.0	1.9	2	0	0	2	2	1	1	Mnd1	HTH	domain
TrmB	PF01978.19	gi|336255303|ref|YP_004598410.1|	-	0.00015	21.6	0.1	0.00028	20.7	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|336255303|ref|YP_004598410.1|	-	0.00023	21.3	0.1	0.00061	19.9	0.1	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_13	PF11972.8	gi|336255303|ref|YP_004598410.1|	-	0.00025	21.0	0.1	0.00058	19.9	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|336255303|ref|YP_004598410.1|	-	0.00097	19.4	0.0	0.0032	17.8	0.0	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
GntR	PF00392.21	gi|336255303|ref|YP_004598410.1|	-	0.0022	17.6	0.1	0.0067	16.0	0.2	1.8	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	gntR	family
HemN_C	PF06969.16	gi|336255303|ref|YP_004598410.1|	-	0.0026	17.8	0.0	0.011	15.8	0.0	1.9	2	0	0	2	2	2	1	HemN	C-terminal	domain
SMC_ScpB	PF04079.16	gi|336255303|ref|YP_004598410.1|	-	0.0046	16.6	0.2	0.0089	15.7	0.2	1.4	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_12	PF08461.10	gi|336255303|ref|YP_004598410.1|	-	0.0051	16.7	0.0	0.012	15.6	0.0	1.6	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_23	PF13384.6	gi|336255303|ref|YP_004598410.1|	-	0.0085	15.9	0.1	0.02	14.7	0.1	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
DUF4423	PF14394.6	gi|336255303|ref|YP_004598410.1|	-	0.018	14.8	0.0	0.027	14.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_1	PF00126.27	gi|336255303|ref|YP_004598410.1|	-	0.021	14.7	0.1	0.058	13.4	0.1	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TetR_C_7	PF14246.6	gi|336255303|ref|YP_004598410.1|	-	0.027	14.5	0.0	0.06	13.4	0.0	1.6	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
AbiEi_4	PF13338.6	gi|336255303|ref|YP_004598410.1|	-	0.031	14.4	0.1	0.09	12.9	0.1	1.9	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
DUF4364	PF14277.6	gi|336255303|ref|YP_004598410.1|	-	0.05	13.3	0.0	0.072	12.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
NMD3	PF04981.13	gi|336255303|ref|YP_004598410.1|	-	0.078	12.4	0.1	0.15	11.5	0.0	1.5	2	0	0	2	2	2	0	NMD3	family
LacI	PF00356.21	gi|336255303|ref|YP_004598410.1|	-	0.078	12.8	0.0	0.42	10.4	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
HTH_10	PF04967.12	gi|336255303|ref|YP_004598410.1|	-	0.081	12.7	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_28	PF13518.6	gi|336255303|ref|YP_004598410.1|	-	0.082	13.1	0.1	0.19	11.9	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|336255303|ref|YP_004598410.1|	-	0.087	12.7	0.1	0.2	11.5	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Rio2_N	PF09202.11	gi|336255303|ref|YP_004598410.1|	-	0.12	12.6	0.0	0.21	11.8	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
Mrr_N	PF14338.6	gi|336255303|ref|YP_004598410.1|	-	0.13	12.4	0.0	0.44	10.7	0.0	1.7	1	1	1	2	2	2	0	Mrr	N-terminal	domain
LexA_DNA_bind	PF01726.16	gi|336255303|ref|YP_004598410.1|	-	0.15	11.9	0.0	0.41	10.5	0.0	1.7	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_3	PF01381.22	gi|336255303|ref|YP_004598410.1|	-	0.16	12.1	0.1	0.31	11.1	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix
PAC2	PF09754.9	gi|336255304|ref|YP_004598411.1|	-	3.4e-52	177.6	0.2	3.9e-52	177.3	0.2	1.0	1	0	0	1	1	1	1	PAC2	family
Nop10p	PF04135.12	gi|336255305|ref|YP_004598412.1|	-	1.2e-23	82.9	0.9	1.3e-23	82.7	0.9	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
LisH_2	PF16045.5	gi|336255305|ref|YP_004598412.1|	-	0.13	11.4	0.0	0.2	10.7	0.0	1.2	1	0	0	1	1	1	0	LisH
EIF_2_alpha	PF07541.12	gi|336255306|ref|YP_004598413.1|	-	3.4e-23	81.9	0.0	5.7e-23	81.2	0.0	1.4	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|336255306|ref|YP_004598413.1|	-	4.5e-11	42.9	1.3	9e-11	42.0	1.3	1.5	1	0	0	1	1	1	1	S1	RNA	binding	domain
DUF2073	PF09846.9	gi|336255306|ref|YP_004598413.1|	-	0.011	15.6	0.0	0.024	14.5	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
Ribosomal_S27e	PF01667.17	gi|336255307|ref|YP_004598414.1|	-	6.5e-22	77.0	0.7	6.9e-22	76.9	0.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.10	gi|336255307|ref|YP_004598414.1|	-	8.5e-05	22.6	1.1	0.00012	22.2	1.1	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|336255307|ref|YP_004598414.1|	-	0.025	14.6	0.9	0.03	14.4	0.9	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|336255307|ref|YP_004598414.1|	-	0.027	14.0	1.6	0.041	13.4	1.6	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-C2H2_3	PF13878.6	gi|336255307|ref|YP_004598414.1|	-	0.055	13.3	1.0	3.3	7.6	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
eIF-5_eIF-2B	PF01873.17	gi|336255307|ref|YP_004598414.1|	-	0.1	12.5	1.9	0.13	12.1	1.9	1.1	1	0	0	1	1	1	0	Domain	found	in	IF2B/IF5
zinc_ribbon_6	PF14599.6	gi|336255307|ref|YP_004598414.1|	-	0.12	12.4	1.9	0.22	11.6	1.9	1.5	1	1	0	1	1	1	0	Zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|336255307|ref|YP_004598414.1|	-	0.33	10.9	3.8	13	5.9	0.3	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
Ribosomal_L44	PF00935.19	gi|336255308|ref|YP_004598415.1|	-	1.3e-26	92.9	2.5	1.6e-26	92.6	2.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.6	gi|336255308|ref|YP_004598415.1|	-	1.5e-05	24.2	0.6	0.019	14.3	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336255308|ref|YP_004598415.1|	-	0.0098	16.0	1.8	2.4	8.3	0.2	2.4	2	0	0	2	2	2	2	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336255308|ref|YP_004598415.1|	-	0.015	15.2	2.1	3.1	7.9	0.2	2.3	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|336255308|ref|YP_004598415.1|	-	0.021	14.5	1.5	0.78	9.5	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn_ribbon_SprT	PF17283.2	gi|336255308|ref|YP_004598415.1|	-	0.022	14.6	5.7	0.64	10.0	0.6	2.4	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Terminase_GpA	PF05876.12	gi|336255308|ref|YP_004598415.1|	-	0.029	12.9	1.6	0.042	12.4	1.6	1.3	1	1	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zinc_ribbon_2	PF13240.6	gi|336255308|ref|YP_004598415.1|	-	0.064	13.0	4.1	2.3	8.1	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|336255308|ref|YP_004598415.1|	-	0.094	13.0	2.4	1.1	9.6	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|336255308|ref|YP_004598415.1|	-	0.15	12.0	1.9	12	5.9	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|336255308|ref|YP_004598415.1|	-	0.47	10.5	4.8	1.6	8.9	4.8	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-Mss51	PF13824.6	gi|336255308|ref|YP_004598415.1|	-	0.49	10.5	7.6	0.87	9.7	7.6	1.5	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Rubredoxin_2	PF18073.1	gi|336255308|ref|YP_004598415.1|	-	0.87	9.4	7.0	0.68	9.7	0.6	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
GtrA	PF04138.14	gi|336255310|ref|YP_004598417.1|	-	3.7e-22	78.8	10.1	4.3e-22	78.6	10.1	1.0	1	0	0	1	1	1	1	GtrA-like	protein
SPT_ssu-like	PF11779.8	gi|336255312|ref|YP_004598419.1|	-	0.12	12.0	1.9	1.9	8.2	0.3	2.3	2	0	0	2	2	2	0	Small	subunit	of	serine	palmitoyltransferase-like
RSRP	PF17069.5	gi|336255312|ref|YP_004598419.1|	-	0.63	9.6	13.9	0.86	9.1	13.9	1.1	1	0	0	1	1	1	0	Arginine/Serine-Rich	protein	1
AF-4	PF05110.13	gi|336255312|ref|YP_004598419.1|	-	1.5	6.8	7.2	1.7	6.6	7.2	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
DUF2721	PF11026.8	gi|336255312|ref|YP_004598419.1|	-	5.3	6.9	7.6	0.19	11.7	1.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
ABC_tran	PF00005.27	gi|336255313|ref|YP_004598420.1|	-	3.4e-33	115.0	0.0	5.8e-33	114.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336255313|ref|YP_004598420.1|	-	4.9e-15	55.8	0.5	9.7e-15	54.8	0.5	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336255313|ref|YP_004598420.1|	-	4.7e-06	26.6	0.4	0.0052	16.6	0.2	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336255313|ref|YP_004598420.1|	-	2e-05	24.9	0.1	0.00032	21.0	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|336255313|ref|YP_004598420.1|	-	0.0016	18.0	0.0	0.0075	15.7	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336255313|ref|YP_004598420.1|	-	0.0047	17.3	0.7	0.011	16.2	0.4	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336255313|ref|YP_004598420.1|	-	0.018	15.5	0.0	0.081	13.4	0.0	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|336255313|ref|YP_004598420.1|	-	0.019	14.5	1.0	1.1	8.8	1.0	2.6	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|336255313|ref|YP_004598420.1|	-	0.032	14.2	0.9	0.78	9.7	0.1	2.8	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.25	gi|336255313|ref|YP_004598420.1|	-	0.036	13.7	0.0	0.036	13.7	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_13	PF13166.6	gi|336255313|ref|YP_004598420.1|	-	0.082	11.5	0.1	2.4	6.7	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.9	gi|336255313|ref|YP_004598420.1|	-	0.17	11.7	0.3	0.62	9.8	0.1	1.9	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|336255313|ref|YP_004598420.1|	-	0.19	11.6	0.0	0.33	10.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|336255313|ref|YP_004598420.1|	-	0.23	11.3	0.1	0.48	10.2	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|336255314|ref|YP_004598421.1|	-	5.9e-28	98.1	0.0	2.2e-15	57.4	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336255314|ref|YP_004598421.1|	-	2.1e-19	69.8	0.1	4.8e-19	68.6	0.1	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336255314|ref|YP_004598421.1|	-	3e-06	27.3	0.0	3.1e-05	23.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336255314|ref|YP_004598421.1|	-	0.0018	17.7	0.1	0.3	10.5	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336255314|ref|YP_004598421.1|	-	0.022	15.1	0.0	0.057	13.8	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336255314|ref|YP_004598421.1|	-	0.027	14.8	0.1	0.61	10.4	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|336255314|ref|YP_004598421.1|	-	0.06	13.1	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF87	PF01935.17	gi|336255314|ref|YP_004598421.1|	-	0.1	12.7	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
Sigma54_activat	PF00158.26	gi|336255314|ref|YP_004598421.1|	-	0.18	11.5	0.1	0.66	9.7	0.0	1.8	2	0	0	2	2	2	0	Sigma-54	interaction	domain
BPD_transp_1	PF00528.22	gi|336255315|ref|YP_004598422.1|	-	4e-22	78.8	6.5	4e-22	78.8	6.5	3.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336255315|ref|YP_004598422.1|	-	0.059	13.3	0.0	0.059	13.3	0.0	3.9	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Abhydrolase_9_N	PF15420.6	gi|336255315|ref|YP_004598422.1|	-	5.3	7.0	23.6	0.63	10.0	1.2	4.3	4	1	1	5	5	5	0	Alpha/beta-hydrolase	family	N-terminus
BPD_transp_1	PF00528.22	gi|336255316|ref|YP_004598423.1|	-	6.9e-35	120.5	12.6	6.9e-35	120.5	12.6	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|336255317|ref|YP_004598424.1|	-	5e-71	239.7	0.6	7e-71	239.2	0.6	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Pribosyltran	PF00156.27	gi|336255318|ref|YP_004598425.1|	-	3.1e-17	62.6	3.6	4.4e-17	62.1	3.6	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|336255318|ref|YP_004598425.1|	-	0.00014	21.4	0.3	0.00016	21.2	0.3	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Reticulon	PF02453.17	gi|336255319|ref|YP_004598426.1|	-	0.015	15.3	0.2	0.021	14.8	0.2	1.2	1	0	0	1	1	1	0	Reticulon
MHYT	PF03707.16	gi|336255319|ref|YP_004598426.1|	-	2.3	8.5	5.5	3.1	8.0	0.4	2.2	1	1	1	2	2	2	0	Bacterial	signalling	protein	N	terminal	repeat
DFP	PF04127.15	gi|336255320|ref|YP_004598427.1|	-	1.5e-51	174.9	2.3	2.4e-50	171.0	0.6	2.2	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|336255320|ref|YP_004598427.1|	-	3.4e-35	121.1	0.2	4.9e-35	120.6	0.2	1.3	1	0	0	1	1	1	1	Flavoprotein
PALP	PF00291.25	gi|336255320|ref|YP_004598427.1|	-	0.026	13.9	7.6	0.095	12.1	2.7	2.5	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
3HCDH_N	PF02737.18	gi|336255320|ref|YP_004598427.1|	-	0.063	13.1	0.2	0.15	12.0	0.2	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short_C2	PF13561.6	gi|336255320|ref|YP_004598427.1|	-	0.34	10.4	6.3	0.67	9.5	1.7	3.1	3	1	0	3	3	3	0	Enoyl-(Acyl	carrier	protein)	reductase
Acetyltransf_1	PF00583.25	gi|336255321|ref|YP_004598428.1|	-	4.3e-18	65.7	0.1	5.3e-18	65.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|336255321|ref|YP_004598428.1|	-	5.5e-12	45.7	0.0	2e-11	43.9	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336255321|ref|YP_004598428.1|	-	9.3e-11	42.0	0.0	1.4e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336255321|ref|YP_004598428.1|	-	8.3e-07	28.9	0.0	1.2e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|336255321|ref|YP_004598428.1|	-	0.0002	22.0	0.0	0.00026	21.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336255321|ref|YP_004598428.1|	-	0.00055	20.0	0.0	0.0011	19.0	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.6	gi|336255321|ref|YP_004598428.1|	-	0.00073	19.2	0.0	0.0014	18.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FGase	PF05013.12	gi|336255321|ref|YP_004598428.1|	-	0.0027	17.9	0.1	0.0038	17.5	0.1	1.4	1	1	0	1	1	1	1	N-formylglutamate	amidohydrolase
Acetyltransf_9	PF13527.7	gi|336255321|ref|YP_004598428.1|	-	0.016	15.3	0.0	0.041	14.0	0.0	1.6	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336255321|ref|YP_004598428.1|	-	0.02	15.0	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|336255321|ref|YP_004598428.1|	-	0.19	11.7	0.0	0.37	10.8	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
N6_N4_Mtase	PF01555.18	gi|336255322|ref|YP_004598429.1|	-	2.4e-18	66.7	0.0	3.8e-09	36.6	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
Met_10	PF02475.16	gi|336255322|ref|YP_004598429.1|	-	0.0045	16.8	0.0	0.0092	15.7	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
Pyr_redox_2	PF07992.14	gi|336255323|ref|YP_004598430.1|	-	1.2e-12	47.6	3.6	5.9e-06	25.7	0.1	2.1	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|336255323|ref|YP_004598430.1|	-	2e-05	23.9	9.6	0.00031	20.0	4.2	2.2	1	1	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336255323|ref|YP_004598430.1|	-	0.00016	21.2	5.2	0.00016	21.1	3.8	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|336255323|ref|YP_004598430.1|	-	0.00019	21.2	10.4	0.087	12.4	4.4	2.6	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|336255323|ref|YP_004598430.1|	-	0.00031	19.9	0.4	0.00046	19.4	0.4	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|336255323|ref|YP_004598430.1|	-	0.002	17.4	0.8	0.0034	16.7	0.8	1.4	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|336255323|ref|YP_004598430.1|	-	0.0042	17.3	1.3	0.0065	16.7	0.3	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|336255323|ref|YP_004598430.1|	-	0.0067	15.2	0.1	0.044	12.5	0.6	1.8	2	0	0	2	2	2	1	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|336255323|ref|YP_004598430.1|	-	0.012	14.7	0.8	0.088	11.8	0.3	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|336255323|ref|YP_004598430.1|	-	0.023	13.9	0.2	0.15	11.2	0.3	2.0	1	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|336255323|ref|YP_004598430.1|	-	0.051	12.9	0.1	0.083	12.2	0.1	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Peptidase_M48	PF01435.18	gi|336255324|ref|YP_004598431.1|	-	1.6e-19	70.4	0.0	2.7e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
DUF2268	PF10026.9	gi|336255324|ref|YP_004598431.1|	-	0.12	11.9	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
Peptidase_M43	PF05572.13	gi|336255324|ref|YP_004598431.1|	-	0.19	11.6	0.0	0.32	10.9	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
DUF805	PF05656.14	gi|336255324|ref|YP_004598431.1|	-	3.8	8.0	5.6	9.8	6.6	5.6	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
Polyketide_cyc2	PF10604.9	gi|336255325|ref|YP_004598432.1|	-	1.9e-09	37.9	0.6	2.6e-09	37.5	0.6	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|336255325|ref|YP_004598432.1|	-	1.9e-05	24.8	0.1	3.7e-05	23.9	0.1	1.5	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
TrkA_N	PF02254.18	gi|336255326|ref|YP_004598433.1|	-	2.9e-50	169.4	10.1	3.3e-26	91.8	2.3	2.8	3	0	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|336255326|ref|YP_004598433.1|	-	1.3e-26	92.2	12.8	1.6e-14	53.4	0.2	3.6	3	0	0	3	3	3	2	TrkA-C	domain
Shikimate_DH	PF01488.20	gi|336255326|ref|YP_004598433.1|	-	1.2e-11	44.8	0.6	9.5e-06	25.7	0.4	2.5	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|336255326|ref|YP_004598433.1|	-	1.2e-10	41.7	3.7	4.1e-05	24.0	1.3	2.8	3	0	0	3	3	2	2	Putative	NAD(P)-binding
NAD_binding_10	PF13460.6	gi|336255326|ref|YP_004598433.1|	-	5.4e-10	39.4	6.0	0.00014	21.9	1.0	2.7	3	0	0	3	3	3	2	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|336255326|ref|YP_004598433.1|	-	8.3e-08	32.6	2.7	0.00018	21.8	0.9	2.8	2	1	1	3	3	3	2	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|336255326|ref|YP_004598433.1|	-	5.6e-06	26.3	0.1	0.0042	17.0	0.2	2.4	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|336255326|ref|YP_004598433.1|	-	7.5e-06	25.4	0.4	0.0025	17.1	0.2	3.0	3	0	0	3	3	3	1	FAD	binding	domain
F420_oxidored	PF03807.17	gi|336255326|ref|YP_004598433.1|	-	1.1e-05	25.9	1.6	0.02	15.5	0.2	3.1	3	1	0	3	3	2	2	NADP	oxidoreductase	coenzyme	F420-dependent
Castor_Poll_mid	PF06241.12	gi|336255326|ref|YP_004598433.1|	-	1.2e-05	25.2	0.0	0.0022	18.0	0.0	2.8	2	0	0	2	2	2	1	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
adh_short	PF00106.25	gi|336255326|ref|YP_004598433.1|	-	0.0002	20.9	0.4	0.093	12.2	0.0	2.5	2	0	0	2	2	2	2	short	chain	dehydrogenase
DAO	PF01266.24	gi|336255326|ref|YP_004598433.1|	-	0.00023	20.8	5.3	0.0019	17.8	1.7	2.7	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
ADH_zinc_N	PF00107.26	gi|336255326|ref|YP_004598433.1|	-	0.00028	20.8	1.3	0.0037	17.2	0.0	3.1	3	1	0	3	3	2	1	Zinc-binding	dehydrogenase
Pyr_redox_2	PF07992.14	gi|336255326|ref|YP_004598433.1|	-	0.00059	19.2	5.6	0.0065	15.7	5.6	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|336255326|ref|YP_004598433.1|	-	0.001	18.7	0.2	0.0094	15.5	0.3	2.5	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|336255326|ref|YP_004598433.1|	-	0.0014	18.9	0.1	0.16	12.1	0.1	2.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.16	gi|336255326|ref|YP_004598433.1|	-	0.0033	17.1	0.2	0.012	15.3	0.1	2.0	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.23	gi|336255326|ref|YP_004598433.1|	-	0.006	16.6	0.0	0.34	10.9	0.0	2.5	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ThiF	PF00899.21	gi|336255326|ref|YP_004598433.1|	-	0.051	12.9	1.6	0.28	10.5	0.3	2.5	2	1	1	3	3	3	0	ThiF	family
2-Hacid_dh_C	PF02826.19	gi|336255326|ref|YP_004598433.1|	-	0.051	12.9	0.1	5.1	6.4	0.1	2.5	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|336255326|ref|YP_004598433.1|	-	0.086	13.7	1.7	13	6.6	0.2	3.4	2	1	1	3	3	3	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
HAS-barrel	PF09378.10	gi|336255326|ref|YP_004598433.1|	-	0.11	12.6	1.7	1.7	8.9	0.1	2.9	2	0	0	2	2	2	0	HAS	barrel	domain
YflT	PF11181.8	gi|336255326|ref|YP_004598433.1|	-	0.22	12.0	2.6	2.4	8.7	0.1	3.1	3	1	1	4	4	3	0	Heat	induced	stress	protein	YflT
AdoHcyase_NAD	PF00670.21	gi|336255326|ref|YP_004598433.1|	-	0.36	10.9	2.4	2.4	8.2	1.7	2.7	3	0	0	3	3	3	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|336255326|ref|YP_004598433.1|	-	0.4	11.3	7.8	5.1	7.7	0.6	3.6	4	0	0	4	4	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
Peptidase_M42	PF05343.14	gi|336255327|ref|YP_004598434.1|	-	1.9e-89	299.5	0.3	2.3e-89	299.3	0.3	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M28	PF04389.17	gi|336255327|ref|YP_004598434.1|	-	8.2e-10	38.7	0.4	2.8e-06	27.2	0.1	2.2	2	0	0	2	2	2	2	Peptidase	family	M28
Peptidase_M20	PF01546.28	gi|336255327|ref|YP_004598434.1|	-	9.4e-10	38.5	0.5	1.8e-09	37.6	0.5	1.5	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.15	gi|336255327|ref|YP_004598434.1|	-	0.00056	18.8	0.0	0.66	8.7	0.0	2.1	1	1	0	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
Thiolase_N	PF00108.23	gi|336255328|ref|YP_004598435.1|	-	1.2e-26	93.6	0.4	1.3e-22	80.4	0.1	2.3	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.26	gi|336255328|ref|YP_004598435.1|	-	3.2e-10	40.0	8.8	3.2e-10	40.0	1.9	3.1	4	1	1	5	5	5	1	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|336255328|ref|YP_004598435.1|	-	2.3e-09	36.9	0.4	5.7e-09	35.7	0.4	1.7	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.10	gi|336255328|ref|YP_004598435.1|	-	0.003	17.4	0.7	1.2	9.0	0.2	2.7	2	0	0	2	2	2	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ketoacyl-synt_C	PF02801.22	gi|336255328|ref|YP_004598435.1|	-	0.16	12.0	5.5	0.78	9.8	1.6	3.4	3	1	0	3	3	3	0	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|336255329|ref|YP_004598436.1|	-	2.2e-12	46.8	1.4	3.2e-12	46.3	1.4	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|336255329|ref|YP_004598436.1|	-	5.7e-06	26.1	0.8	9.6e-06	25.4	0.8	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|336255329|ref|YP_004598436.1|	-	0.036	13.6	0.2	0.069	12.7	0.2	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
MafB19-deam	PF14437.6	gi|336255330|ref|YP_004598437.1|	-	5.2e-16	58.7	0.0	6.1e-16	58.4	0.0	1.1	1	0	0	1	1	1	1	MafB19-like	deaminase
dCMP_cyt_deam_1	PF00383.23	gi|336255330|ref|YP_004598437.1|	-	2.3e-15	56.3	0.0	2.9e-15	56.0	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
SNAD4	PF18750.1	gi|336255330|ref|YP_004598437.1|	-	1.8e-05	24.8	0.0	2.7e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Secreted	Novel	AID/APOBEC-like	Deaminase	4
NAD2	PF18782.1	gi|336255330|ref|YP_004598437.1|	-	0.00032	20.8	0.0	0.00046	20.3	0.0	1.2	1	0	0	1	1	1	1	Novel	AID	APOBEC	clade	2
NAD1	PF18778.1	gi|336255330|ref|YP_004598437.1|	-	0.00075	19.6	0.0	0.0011	19.2	0.0	1.1	1	0	0	1	1	1	1	Novel	AID	APOBEC	clade	1
APOBEC2	PF18772.1	gi|336255330|ref|YP_004598437.1|	-	0.0014	18.7	0.0	0.0021	18.1	0.0	1.2	1	0	0	1	1	1	1	APOBEC2
APOBEC_N	PF08210.11	gi|336255330|ref|YP_004598437.1|	-	0.01	15.7	0.0	0.011	15.6	0.0	1.2	1	0	0	1	1	1	0	APOBEC-like	N-terminal	domain
OTT_1508_deam	PF14441.6	gi|336255330|ref|YP_004598437.1|	-	0.018	15.0	0.0	0.033	14.2	0.0	1.5	1	0	0	1	1	1	0	OTT_1508-like	deaminase
Bd3614-deam	PF14439.6	gi|336255330|ref|YP_004598437.1|	-	0.03	14.4	0.1	0.046	13.8	0.1	1.4	1	0	0	1	1	1	0	Bd3614-like	deaminase
RDD	PF06271.12	gi|336255332|ref|YP_004598439.1|	-	2.3e-20	73.2	7.1	2.9e-20	72.9	7.1	1.1	1	0	0	1	1	1	1	RDD	family
DUF418	PF04235.12	gi|336255332|ref|YP_004598439.1|	-	0.44	10.5	5.7	0.34	10.8	4.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF418)
Peptidase_M48_N	PF16491.5	gi|336255332|ref|YP_004598439.1|	-	2.5	7.9	6.4	1.7	8.5	2.9	1.9	2	0	0	2	2	2	0	CAAX	prenyl	protease	N-terminal,	five	membrane	helices
NUDIX	PF00293.28	gi|336255333|ref|YP_004598440.1|	-	5.2e-19	68.6	1.0	6.4e-19	68.3	1.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
AAA_17	PF13207.6	gi|336255333|ref|YP_004598440.1|	-	0.028	14.8	0.1	0.042	14.3	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
Ribosomal_S10	PF00338.22	gi|336255334|ref|YP_004598441.1|	-	3.2e-13	49.7	0.0	3.6e-13	49.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
Peptidase_M20	PF01546.28	gi|336255335|ref|YP_004598442.1|	-	4.8e-25	88.5	6.0	6.9e-25	88.0	6.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336255335|ref|YP_004598442.1|	-	5.7e-13	48.7	0.5	1.6e-12	47.3	0.3	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M48	PF01435.18	gi|336255336|ref|YP_004598443.1|	-	1.9e-25	89.8	0.1	3.3e-25	89.0	0.1	1.4	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|336255336|ref|YP_004598443.1|	-	0.0013	18.0	0.0	0.0025	17.1	0.0	1.5	1	0	0	1	1	1	1	BlaR1	peptidase	M56
BSP	PF04450.12	gi|336255336|ref|YP_004598443.1|	-	0.047	13.5	0.0	0.08	12.7	0.0	1.4	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
SprT-like	PF10263.9	gi|336255336|ref|YP_004598443.1|	-	0.062	13.2	0.0	0.098	12.5	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
DUF4781	PF16013.5	gi|336255336|ref|YP_004598443.1|	-	0.2	10.5	2.6	0.38	9.5	2.6	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
Herpes_UL6	PF01763.16	gi|336255336|ref|YP_004598443.1|	-	0.26	9.7	0.1	0.41	9.1	0.1	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
FAD_binding_2	PF00890.24	gi|336255337|ref|YP_004598444.1|	-	6.7e-12	45.2	2.9	1.2e-07	31.2	0.3	2.7	3	0	0	3	3	3	2	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|336255337|ref|YP_004598444.1|	-	4.1e-11	42.4	0.6	7e-07	28.4	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_binding_3	PF01494.19	gi|336255337|ref|YP_004598444.1|	-	2.1e-09	37.1	2.1	2.2e-08	33.7	2.1	2.2	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|336255337|ref|YP_004598444.1|	-	2.7e-09	37.1	9.0	0.00024	20.8	1.0	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|336255337|ref|YP_004598444.1|	-	7.9e-09	35.4	10.2	3e-05	23.6	1.4	2.9	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336255337|ref|YP_004598444.1|	-	1.1e-08	34.7	0.1	1.1e-08	34.7	0.1	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|336255337|ref|YP_004598444.1|	-	6.2e-08	32.1	4.4	2.2e-07	30.3	4.3	1.9	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|336255337|ref|YP_004598444.1|	-	3.3e-07	30.5	4.1	2.2e-06	27.8	0.5	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|336255337|ref|YP_004598444.1|	-	9.4e-06	25.0	2.1	2.8e-05	23.5	0.5	2.1	2	0	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|336255337|ref|YP_004598444.1|	-	1.5e-05	24.2	4.0	0.0051	15.9	0.2	2.4	3	0	0	3	3	3	2	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|336255337|ref|YP_004598444.1|	-	2.7e-05	23.1	2.0	6.6e-05	21.8	0.3	2.0	2	0	0	2	2	2	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|336255337|ref|YP_004598444.1|	-	3.4e-05	23.2	0.3	3.4e-05	23.2	0.3	1.8	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|336255337|ref|YP_004598444.1|	-	0.00075	20.0	6.7	0.0027	18.2	0.4	2.7	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|336255337|ref|YP_004598444.1|	-	0.0027	17.6	0.0	0.0053	16.7	0.0	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Amino_oxidase	PF01593.24	gi|336255337|ref|YP_004598444.1|	-	0.0039	16.5	3.7	0.01	15.1	1.4	2.5	2	1	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
ApbA	PF02558.16	gi|336255337|ref|YP_004598444.1|	-	0.0094	15.6	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.20	gi|336255337|ref|YP_004598444.1|	-	0.021	14.9	0.0	0.1	12.6	0.0	2.1	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|336255337|ref|YP_004598444.1|	-	0.022	14.1	0.1	0.79	9.0	0.0	2.3	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
GMC_oxred_N	PF00732.19	gi|336255337|ref|YP_004598444.1|	-	0.026	13.9	0.1	1.2	8.4	0.0	2.1	2	0	0	2	2	2	0	GMC	oxidoreductase
Ferredoxin_N	PF16947.5	gi|336255337|ref|YP_004598444.1|	-	0.031	14.4	1.4	0.3	11.2	0.4	2.7	2	0	0	2	2	2	0	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
Pyr_redox_3	PF13738.6	gi|336255337|ref|YP_004598444.1|	-	0.042	13.1	1.4	0.1	11.8	0.5	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ThiF	PF00899.21	gi|336255337|ref|YP_004598444.1|	-	0.073	12.4	0.3	0.13	11.6	0.3	1.3	1	0	0	1	1	1	0	ThiF	family
Fer2	PF00111.27	gi|336255338|ref|YP_004598445.1|	-	4e-11	42.7	4.9	5.4e-11	42.3	4.9	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|336255338|ref|YP_004598445.1|	-	0.012	15.6	0.3	0.014	15.4	0.3	1.1	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Lactamase_B	PF00753.27	gi|336255339|ref|YP_004598446.1|	-	2e-17	63.9	3.3	4.1e-17	62.8	3.3	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|336255339|ref|YP_004598446.1|	-	9.4e-09	35.8	0.0	2.8e-08	34.2	0.0	1.9	2	0	0	2	2	2	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|336255339|ref|YP_004598446.1|	-	0.00033	20.2	1.9	0.00067	19.2	0.7	2.1	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Rubrerythrin	PF02915.17	gi|336255340|ref|YP_004598447.1|	-	0.013	15.9	0.3	0.033	14.6	0.3	1.6	1	0	0	1	1	1	0	Rubrerythrin
COQ7	PF03232.13	gi|336255340|ref|YP_004598447.1|	-	0.078	12.7	0.3	0.84	9.4	0.1	2.3	2	1	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Tubulin	PF00091.25	gi|336255341|ref|YP_004598448.1|	-	1.8e-41	142.5	0.5	2.7e-41	141.9	0.5	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|336255341|ref|YP_004598448.1|	-	2.2e-36	124.0	4.2	2.8e-36	123.7	2.3	2.2	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
NAD_binding_10	PF13460.6	gi|336255341|ref|YP_004598448.1|	-	0.0058	16.5	2.7	0.0071	16.3	0.2	2.2	3	0	0	3	3	3	1	NAD(P)H-binding
Tubulin_2	PF13809.6	gi|336255341|ref|YP_004598448.1|	-	0.025	13.8	7.8	0.081	12.1	2.1	2.6	1	1	1	2	2	2	0	Tubulin	like
tRNA_deacylase	PF04414.12	gi|336255342|ref|YP_004598449.1|	-	2.5e-61	206.8	0.0	3.7e-61	206.2	0.0	1.2	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
DUF2201	PF09967.9	gi|336255342|ref|YP_004598449.1|	-	0.052	13.7	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	VWA-like	domain	(DUF2201)
BAT	PF15915.5	gi|336255343|ref|YP_004598450.1|	-	1.7e-43	148.2	7.3	1.7e-43	148.2	7.3	2.8	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
PAS_4	PF08448.10	gi|336255343|ref|YP_004598450.1|	-	1.3e-41	141.3	12.3	1.2e-17	64.1	0.1	5.2	5	0	0	5	5	5	3	PAS	fold
PAS_9	PF13426.7	gi|336255343|ref|YP_004598450.1|	-	1.1e-37	128.4	0.0	2e-12	47.2	0.0	3.5	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|336255343|ref|YP_004598450.1|	-	1.1e-34	118.8	0.0	1.9e-11	44.0	0.0	3.4	3	0	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|336255343|ref|YP_004598450.1|	-	2.9e-30	104.4	0.1	2.7e-11	43.6	0.0	3.6	3	0	0	3	3	3	3	PAS	fold
HTH_10	PF04967.12	gi|336255343|ref|YP_004598450.1|	-	9.8e-17	60.5	0.1	2.4e-16	59.2	0.1	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_8	PF13188.7	gi|336255343|ref|YP_004598450.1|	-	2.7e-11	43.2	2.5	6.6e-05	22.8	0.0	3.7	3	0	0	3	3	3	2	PAS	domain
GAF_2	PF13185.6	gi|336255343|ref|YP_004598450.1|	-	1.8e-09	38.0	2.7	1.8e-09	38.0	2.7	2.6	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|336255343|ref|YP_004598450.1|	-	1.6e-06	28.8	0.0	5.7e-06	27.0	0.0	2.1	1	0	0	1	1	1	1	GAF	domain
PAS_7	PF12860.7	gi|336255343|ref|YP_004598450.1|	-	2.3e-05	24.5	0.0	0.54	10.4	0.0	3.9	3	0	0	3	3	3	2	PAS	fold
GAF_3	PF13492.6	gi|336255343|ref|YP_004598450.1|	-	0.00011	22.6	0.0	0.0004	20.7	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
PAS_11	PF14598.6	gi|336255343|ref|YP_004598450.1|	-	0.0051	16.9	0.0	2.3	8.4	0.0	3.2	3	0	0	3	3	3	1	PAS	domain
MEKHLA	PF08670.11	gi|336255343|ref|YP_004598450.1|	-	0.0062	16.5	0.0	0.87	9.5	0.0	2.7	3	0	0	3	3	2	1	MEKHLA	domain
SCP2_2	PF13530.6	gi|336255343|ref|YP_004598450.1|	-	0.013	15.9	0.0	0.056	13.8	0.0	2.2	2	0	0	2	2	1	0	Sterol	carrier	protein	domain
HTH_20	PF12840.7	gi|336255343|ref|YP_004598450.1|	-	0.018	15.1	0.0	0.11	12.6	0.0	2.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
CodY	PF06018.14	gi|336255343|ref|YP_004598450.1|	-	0.081	12.4	0.0	0.45	10.0	0.0	2.1	2	0	0	2	2	2	0	CodY	GAF-like	domain
SpoVT_C	PF15714.5	gi|336255343|ref|YP_004598450.1|	-	0.087	12.9	0.0	0.9	9.6	0.0	2.6	3	0	0	3	3	3	0	Stage	V	sporulation	protein	T	C-terminal,	transcription	factor
HTH_30	PF13556.6	gi|336255343|ref|YP_004598450.1|	-	0.1	12.4	0.3	2.5	7.9	0.1	2.8	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|336255343|ref|YP_004598450.1|	-	0.13	11.8	1.0	0.59	9.7	0.0	2.7	2	1	0	2	2	2	0	Sigma-70,	region	4
Na_Ca_ex	PF01699.24	gi|336255345|ref|YP_004598452.1|	-	6.3e-45	152.8	42.3	3.5e-25	88.7	16.6	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Shikimate_dh_N	PF08501.11	gi|336255346|ref|YP_004598453.1|	-	3.9e-27	94.3	0.0	9.2e-27	93.1	0.0	1.6	2	0	0	2	2	1	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.20	gi|336255346|ref|YP_004598453.1|	-	1.9e-12	47.4	0.0	3.1e-12	46.7	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
SDH_C	PF18317.1	gi|336255346|ref|YP_004598453.1|	-	5.2e-12	45.3	1.0	1.2e-11	44.2	1.0	1.7	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|336255346|ref|YP_004598453.1|	-	8.7e-06	25.2	0.0	1.6e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336255346|ref|YP_004598453.1|	-	0.00016	21.3	0.1	0.00027	20.6	0.1	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|336255346|ref|YP_004598453.1|	-	0.00017	22.1	0.1	0.0003	21.3	0.1	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
adh_short	PF00106.25	gi|336255346|ref|YP_004598453.1|	-	0.0013	18.3	0.7	0.003	17.0	0.3	1.6	1	1	1	2	2	2	1	short	chain	dehydrogenase
NAD_binding_2	PF03446.15	gi|336255346|ref|YP_004598453.1|	-	0.0021	18.3	0.1	0.0036	17.5	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|336255346|ref|YP_004598453.1|	-	0.006	15.9	0.0	0.12	11.7	0.0	2.2	1	1	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|336255346|ref|YP_004598453.1|	-	0.01	16.1	0.6	0.037	14.3	0.6	2.0	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Pyr_redox_3	PF13738.6	gi|336255346|ref|YP_004598453.1|	-	0.014	14.7	0.0	0.018	14.3	0.0	1.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|336255346|ref|YP_004598453.1|	-	0.016	14.9	0.1	0.024	14.3	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|336255346|ref|YP_004598453.1|	-	0.017	15.0	0.2	0.025	14.5	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|336255346|ref|YP_004598453.1|	-	0.025	15.0	0.0	0.041	14.3	0.0	1.3	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ThiF	PF00899.21	gi|336255346|ref|YP_004598453.1|	-	0.03	13.7	0.7	0.059	12.7	0.4	1.6	2	0	0	2	2	2	0	ThiF	family
AlaDh_PNT_C	PF01262.21	gi|336255346|ref|YP_004598453.1|	-	0.033	13.5	0.3	0.052	12.8	0.3	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|336255346|ref|YP_004598453.1|	-	0.034	13.4	0.1	0.045	13.0	0.1	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.21	gi|336255346|ref|YP_004598453.1|	-	0.036	14.1	0.0	0.06	13.4	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336255346|ref|YP_004598453.1|	-	0.14	12.1	0.2	0.31	11.0	0.2	1.6	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GIDA	PF01134.22	gi|336255346|ref|YP_004598453.1|	-	0.32	10.0	1.3	0.65	9.0	0.8	1.6	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
HHH_5	PF14520.6	gi|336255347|ref|YP_004598454.1|	-	2.5e-11	44.0	0.2	4.8e-11	43.1	0.2	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|336255347|ref|YP_004598454.1|	-	2.6e-05	24.5	0.0	7.8e-05	22.9	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
DNA_pol_lambd_f	PF10391.9	gi|336255347|ref|YP_004598454.1|	-	0.0018	18.1	0.0	0.0028	17.4	0.0	1.2	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.8	gi|336255347|ref|YP_004598454.1|	-	0.0034	17.6	0.0	0.0051	17.0	0.0	1.2	1	0	0	1	1	1	1	Pathogenicity	locus
Trypan_PARP	PF05887.11	gi|336255347|ref|YP_004598454.1|	-	0.0041	17.1	38.1	0.0041	17.1	38.1	2.6	1	1	1	2	2	2	1	Procyclic	acidic	repetitive	protein	(PARP)
Mitofilin	PF09731.9	gi|336255347|ref|YP_004598454.1|	-	8.4	5.1	27.5	9.3	5.0	27.5	1.0	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
Chorismate_bind	PF00425.18	gi|336255348|ref|YP_004598455.1|	-	2.5e-102	341.9	0.0	3.5e-102	341.4	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|336255348|ref|YP_004598455.1|	-	3.1e-09	37.2	0.0	1.1e-08	35.4	0.0	1.9	3	0	0	3	3	3	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|336255349|ref|YP_004598456.1|	-	7.1e-40	136.8	0.1	4.7e-39	134.1	0.1	1.8	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|336255349|ref|YP_004598456.1|	-	1.2e-09	38.3	0.3	2.7e-09	37.1	0.2	1.6	1	1	0	1	1	1	1	Peptidase	C26
Peripla_BP_2	PF01497.18	gi|336255349|ref|YP_004598456.1|	-	0.12	12.0	0.1	0.17	11.4	0.1	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
Aminotran_4	PF01063.19	gi|336255350|ref|YP_004598457.1|	-	6.2e-51	173.4	0.0	7.2e-51	173.2	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
N6-adenineMlase	PF10237.9	gi|336255351|ref|YP_004598458.1|	-	3.9e-06	26.8	0.0	6.1e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Probable	N6-adenine	methyltransferase
Sacchrp_dh_NADP	PF03435.18	gi|336255352|ref|YP_004598459.1|	-	3e-12	46.9	0.0	6.4e-12	45.9	0.0	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|336255352|ref|YP_004598459.1|	-	1.5e-05	25.0	0.2	1.5e-05	25.0	0.2	1.9	2	0	0	2	2	2	1	NAD(P)H-binding
Rieske	PF00355.26	gi|336255353|ref|YP_004598460.1|	-	5.9e-05	22.9	0.0	7.2e-05	22.7	0.0	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
HTH_20	PF12840.7	gi|336255354|ref|YP_004598461.1|	-	0.034	14.2	3.0	2	8.6	1.8	2.9	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|336255355|ref|YP_004598462.1|	-	3e-07	30.4	0.4	5.5e-07	29.6	0.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336255355|ref|YP_004598462.1|	-	0.0035	17.2	0.0	0.0054	16.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336255355|ref|YP_004598462.1|	-	0.005	16.7	0.3	0.0078	16.1	0.3	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336255355|ref|YP_004598462.1|	-	0.052	13.1	0.0	0.13	11.9	0.0	1.7	1	1	1	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DprA_WH	PF17782.1	gi|336255355|ref|YP_004598462.1|	-	0.059	13.5	0.8	0.1	12.7	0.8	1.4	1	0	0	1	1	1	0	DprA	winged	helix	domain
Sigma70_r3	PF04539.16	gi|336255355|ref|YP_004598462.1|	-	0.088	12.9	0.1	0.13	12.4	0.1	1.2	1	0	0	1	1	1	0	Sigma-70	region	3
FYDLN_acid	PF09538.10	gi|336255355|ref|YP_004598462.1|	-	0.44	11.3	2.7	0.41	11.3	0.9	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zf-trcl	PF13451.6	gi|336255355|ref|YP_004598462.1|	-	0.87	9.5	7.2	0.25	11.3	1.0	2.2	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|336255355|ref|YP_004598462.1|	-	1.4	8.7	4.1	9.1	6.1	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
NTP_transferase	PF00483.23	gi|336255356|ref|YP_004598463.1|	-	2e-38	132.4	0.0	2.6e-38	132.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336255356|ref|YP_004598463.1|	-	1e-12	48.7	0.0	1e-12	48.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|336255356|ref|YP_004598463.1|	-	0.0051	16.5	1.9	0.13	12.0	0.0	3.1	4	0	0	4	4	4	1	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|336255356|ref|YP_004598463.1|	-	0.025	14.3	0.0	0.042	13.6	0.0	1.4	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Response_reg	PF00072.24	gi|336255357|ref|YP_004598464.1|	-	6.3e-20	71.4	0.0	1.4e-19	70.3	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|336255357|ref|YP_004598464.1|	-	5.6e-19	68.7	0.1	1.1e-18	67.8	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|336255357|ref|YP_004598464.1|	-	4.4e-18	65.9	12.9	4.9e-09	36.6	0.3	4.1	5	1	1	6	6	6	2	GAF	domain
GAF_3	PF13492.6	gi|336255357|ref|YP_004598464.1|	-	1.8e-11	44.5	0.0	2.2e-06	28.1	0.0	2.7	2	0	0	2	2	2	2	GAF	domain
HisKA	PF00512.25	gi|336255357|ref|YP_004598464.1|	-	1.7e-09	37.6	0.3	1.7e-09	37.6	0.3	3.1	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|336255357|ref|YP_004598464.1|	-	3.7e-09	36.8	1.0	2e-08	34.5	0.1	2.8	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.25	gi|336255357|ref|YP_004598464.1|	-	1.8e-08	34.4	0.0	4.3e-08	33.1	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|336255357|ref|YP_004598464.1|	-	7.6e-08	32.6	0.0	2.1e-07	31.1	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|336255357|ref|YP_004598464.1|	-	2.7e-06	27.3	0.0	1.6e-05	24.8	0.0	2.4	2	0	0	2	2	1	1	PAS	domain
CCB2_CCB4	PF11152.8	gi|336255357|ref|YP_004598464.1|	-	0.00029	20.2	0.0	0.0041	16.5	0.0	2.2	2	0	0	2	2	2	1	Cofactor	assembly	of	complex	C	subunit	B,	CCB2/CCB4
PAS_3	PF08447.12	gi|336255357|ref|YP_004598464.1|	-	0.0003	21.0	0.1	0.0017	18.6	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.6	gi|336255357|ref|YP_004598464.1|	-	0.0012	18.8	0.1	0.0036	17.3	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Synaptobrevin	PF00957.21	gi|336255357|ref|YP_004598464.1|	-	0.027	14.2	1.7	2.5	7.9	0.2	2.4	2	0	0	2	2	2	0	Synaptobrevin
PAS_7	PF12860.7	gi|336255357|ref|YP_004598464.1|	-	0.081	13.1	0.0	0.46	10.6	0.0	2.3	2	0	0	2	2	2	0	PAS	fold
HATPase_c_3	PF13589.6	gi|336255357|ref|YP_004598464.1|	-	0.086	12.7	0.1	0.42	10.4	0.0	2.0	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ThiS	PF02597.20	gi|336255358|ref|YP_004598465.1|	-	1.1e-10	42.0	0.0	1.2e-10	41.9	0.0	1.0	1	0	0	1	1	1	1	ThiS	family
LUD_dom	PF02589.15	gi|336255359|ref|YP_004598466.1|	-	3.7e-46	157.3	0.1	5.6e-46	156.6	0.1	1.3	1	0	0	1	1	1	1	LUD	domain
Fer4_8	PF13183.6	gi|336255359|ref|YP_004598466.1|	-	1.6e-08	34.8	4.9	3.7e-08	33.7	4.9	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336255359|ref|YP_004598466.1|	-	4.9e-07	29.8	3.9	0.0011	19.0	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336255359|ref|YP_004598466.1|	-	5.3e-07	29.7	1.6	1.5e-06	28.3	1.7	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|336255359|ref|YP_004598466.1|	-	6.1e-07	29.9	3.7	1.1e-06	29.1	3.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336255359|ref|YP_004598466.1|	-	2.1e-05	25.0	6.7	5.3e-05	23.7	6.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|336255359|ref|YP_004598466.1|	-	5.7e-05	23.2	6.6	0.00028	21.0	6.6	2.0	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336255359|ref|YP_004598466.1|	-	0.00039	20.1	13.0	0.0012	18.6	2.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|336255359|ref|YP_004598466.1|	-	0.015	15.3	2.3	0.015	15.3	2.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336255359|ref|YP_004598466.1|	-	0.034	14.6	13.4	0.085	13.4	3.0	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|336255359|ref|YP_004598466.1|	-	0.046	13.8	14.6	0.16	12.2	3.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|336255359|ref|YP_004598466.1|	-	0.046	13.5	0.3	0.046	13.5	0.3	2.2	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_22	PF17179.4	gi|336255359|ref|YP_004598466.1|	-	0.1	13.4	8.1	0.081	13.8	1.1	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|336255359|ref|YP_004598466.1|	-	0.13	12.5	10.1	0.098	12.9	1.5	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|336255359|ref|YP_004598466.1|	-	0.22	12.5	17.5	0.072	14.1	5.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336255359|ref|YP_004598466.1|	-	9.8	7.2	15.5	4.5	8.3	4.0	2.5	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
LUD_dom	PF02589.15	gi|336255360|ref|YP_004598467.1|	-	6.9e-14	52.0	0.0	9.5e-14	51.5	0.0	1.3	1	1	0	1	1	1	1	LUD	domain
IclR	PF01614.18	gi|336255361|ref|YP_004598468.1|	-	3.8e-40	136.7	0.0	5.6e-40	136.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336255361|ref|YP_004598468.1|	-	3.5e-10	39.5	1.5	3.7e-09	36.3	0.4	2.6	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336255361|ref|YP_004598468.1|	-	2.8e-06	27.1	0.0	7.5e-06	25.7	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|336255361|ref|YP_004598468.1|	-	3.2e-06	27.1	0.8	7.8e-06	25.9	0.2	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336255361|ref|YP_004598468.1|	-	7.8e-05	22.2	0.0	0.00017	21.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336255361|ref|YP_004598468.1|	-	0.00012	21.9	0.1	0.00049	19.9	0.0	2.0	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|336255361|ref|YP_004598468.1|	-	0.00018	21.3	0.1	0.00084	19.2	0.0	2.1	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336255361|ref|YP_004598468.1|	-	0.0007	19.4	0.0	0.013	15.4	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF742	PF05331.11	gi|336255361|ref|YP_004598468.1|	-	0.0039	17.0	0.0	0.0091	15.8	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
HTH_27	PF13463.6	gi|336255361|ref|YP_004598468.1|	-	0.0079	16.7	0.0	0.022	15.3	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|336255361|ref|YP_004598468.1|	-	0.015	15.1	0.0	1.9	8.4	0.0	2.6	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|336255361|ref|YP_004598468.1|	-	0.024	14.6	0.1	0.3	11.1	0.0	2.6	2	1	0	2	2	2	0	HTH	domain
Fe_dep_repress	PF01325.19	gi|336255361|ref|YP_004598468.1|	-	0.027	14.7	0.0	0.069	13.4	0.0	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|336255361|ref|YP_004598468.1|	-	0.029	14.0	0.0	0.082	12.6	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_40	PF14493.6	gi|336255361|ref|YP_004598468.1|	-	0.042	14.3	0.3	0.11	13.0	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|336255361|ref|YP_004598468.1|	-	0.059	13.2	0.2	0.18	11.7	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_34	PF13601.6	gi|336255361|ref|YP_004598468.1|	-	0.06	13.5	0.0	0.27	11.5	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Usp	PF00582.26	gi|336255362|ref|YP_004598469.1|	-	1.6e-21	77.3	0.9	1.8e-21	77.2	0.9	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
tify	PF06200.14	gi|336255362|ref|YP_004598469.1|	-	0.16	11.3	0.0	0.37	10.1	0.0	1.5	1	0	0	1	1	1	0	tify	domain
Glyco_hydro_2_N	PF02837.18	gi|336255363|ref|YP_004598470.1|	-	5.8e-18	65.4	0.1	2e-17	63.6	0.1	1.9	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|336255363|ref|YP_004598470.1|	-	1.2e-14	54.9	2.0	5.6e-14	52.7	0.0	2.7	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_C	PF02836.17	gi|336255363|ref|YP_004598470.1|	-	1.3e-12	47.5	0.0	1.6e-11	43.9	0.0	2.2	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
BetaGal_dom4_5	PF13364.6	gi|336255363|ref|YP_004598470.1|	-	0.0031	18.1	0.0	0.0081	16.7	0.0	1.7	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
Cadherin-like	PF12733.7	gi|336255363|ref|YP_004598470.1|	-	0.024	15.1	9.8	0.16	12.5	0.1	3.3	3	0	0	3	3	3	0	Cadherin-like	beta	sandwich	domain
CIDE-N	PF02017.15	gi|336255363|ref|YP_004598470.1|	-	0.034	14.2	0.5	0.16	12.0	0.1	2.2	2	0	0	2	2	2	0	CIDE-N	domain
ABC_tran	PF00005.27	gi|336255364|ref|YP_004598471.1|	-	8.6e-32	110.5	0.0	1.4e-31	109.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|336255364|ref|YP_004598471.1|	-	2.6e-14	53.1	0.1	6.9e-14	51.8	0.1	1.8	1	0	0	1	1	1	1	TOBE	domain
OB_MalK	PF17912.1	gi|336255364|ref|YP_004598471.1|	-	3.3e-11	43.8	0.0	1.6e-10	41.7	0.0	2.3	2	0	0	2	2	1	1	MalK	OB	fold	domain
TOBE	PF03459.17	gi|336255364|ref|YP_004598471.1|	-	2.6e-07	30.8	0.1	7.4e-07	29.4	0.1	1.8	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|336255364|ref|YP_004598471.1|	-	2.1e-06	27.7	0.4	0.0023	17.8	0.1	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|336255364|ref|YP_004598471.1|	-	0.00036	20.5	0.0	0.00074	19.5	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
Cytidylate_kin	PF02224.18	gi|336255364|ref|YP_004598471.1|	-	0.00042	20.1	0.4	0.11	12.3	0.1	2.3	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_22	PF13401.6	gi|336255364|ref|YP_004598471.1|	-	0.00055	20.2	0.2	0.0021	18.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|336255364|ref|YP_004598471.1|	-	0.00068	19.3	0.0	0.0016	18.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|336255364|ref|YP_004598471.1|	-	0.00072	19.1	0.6	0.0064	16.0	0.6	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|336255364|ref|YP_004598471.1|	-	0.0014	18.4	0.5	0.1	12.3	0.0	2.1	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336255364|ref|YP_004598471.1|	-	0.0017	18.7	0.1	0.0035	17.7	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
CysA_C_terminal	PF17850.1	gi|336255364|ref|YP_004598471.1|	-	0.003	18.1	0.2	0.06	13.9	0.0	3.0	3	0	0	3	3	3	1	CysA	C-terminal	regulatory	domain
AAA_23	PF13476.6	gi|336255364|ref|YP_004598471.1|	-	0.0047	17.5	0.1	0.013	16.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|336255364|ref|YP_004598471.1|	-	0.025	15.1	0.1	0.062	13.8	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|336255364|ref|YP_004598471.1|	-	0.03	13.9	0.3	0.39	10.3	0.0	2.7	3	1	1	4	4	4	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336255364|ref|YP_004598471.1|	-	0.046	13.8	0.1	0.16	12.0	0.1	2.0	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.6	gi|336255364|ref|YP_004598471.1|	-	0.052	13.3	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|336255364|ref|YP_004598471.1|	-	0.058	13.5	0.1	0.18	12.0	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
NB-ARC	PF00931.22	gi|336255364|ref|YP_004598471.1|	-	0.077	12.2	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.12	gi|336255364|ref|YP_004598471.1|	-	0.081	12.8	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ATPase_2	PF01637.18	gi|336255364|ref|YP_004598471.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
DUF624	PF04854.14	gi|336255365|ref|YP_004598472.1|	-	6.8e-05	22.9	0.1	6.8e-05	22.9	0.1	2.6	2	1	1	3	3	3	1	Protein	of	unknown	function,	DUF624
Cg6151-P	PF10233.9	gi|336255365|ref|YP_004598472.1|	-	0.27	11.6	7.6	0.64	10.3	6.0	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	CG6151-P
BPD_transp_1	PF00528.22	gi|336255366|ref|YP_004598473.1|	-	3e-17	63.0	17.9	3e-17	63.0	17.9	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3341	PF11821.8	gi|336255366|ref|YP_004598473.1|	-	0.19	11.3	4.9	0.56	9.8	1.7	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3341)
BPD_transp_1	PF00528.22	gi|336255367|ref|YP_004598474.1|	-	3.8e-18	65.9	19.5	3.8e-18	65.9	19.5	2.1	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|336255368|ref|YP_004598475.1|	-	1.2e-19	71.2	0.0	2e-19	70.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336255368|ref|YP_004598475.1|	-	4.6e-16	59.7	0.0	8e-16	58.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336255368|ref|YP_004598475.1|	-	0.083	12.8	2.1	0.14	12.0	2.1	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
adh_short_C2	PF13561.6	gi|336255369|ref|YP_004598476.1|	-	3e-63	213.5	1.4	3.7e-63	213.2	1.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336255369|ref|YP_004598476.1|	-	1.6e-47	161.5	0.4	2.1e-47	161.1	0.4	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336255369|ref|YP_004598476.1|	-	1.9e-19	70.3	0.9	2.5e-19	69.9	0.9	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336255369|ref|YP_004598476.1|	-	0.0028	17.2	0.2	0.0041	16.6	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ADH_zinc_N	PF00107.26	gi|336255369|ref|YP_004598476.1|	-	0.011	15.7	0.5	0.02	14.8	0.5	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Dak1_2	PF13684.6	gi|336255369|ref|YP_004598476.1|	-	0.016	14.3	0.3	0.03	13.4	0.3	1.5	1	1	1	2	2	2	0	Dihydroxyacetone	kinase	family
THF_DHG_CYH_C	PF02882.19	gi|336255369|ref|YP_004598476.1|	-	0.022	14.1	0.9	0.11	11.8	0.9	2.1	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NmrA	PF05368.13	gi|336255369|ref|YP_004598476.1|	-	0.036	13.6	1.1	0.054	13.0	1.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
2-Hacid_dh_C	PF02826.19	gi|336255369|ref|YP_004598476.1|	-	0.094	12.1	0.2	0.24	10.8	0.2	1.7	1	1	1	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|336255370|ref|YP_004598477.1|	-	1e-17	65.0	0.2	4.3e-17	63.0	0.0	2.0	2	1	1	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336255370|ref|YP_004598477.1|	-	0.021	14.8	0.0	0.062	13.3	0.0	1.8	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.24	gi|336255370|ref|YP_004598477.1|	-	0.021	15.3	0.0	0.055	13.9	0.0	1.7	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Acetyltransf_1	PF00583.25	gi|336255371|ref|YP_004598478.1|	-	9.1e-14	51.7	0.0	1.3e-13	51.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336255371|ref|YP_004598478.1|	-	4.6e-10	39.8	0.0	6.9e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336255371|ref|YP_004598478.1|	-	3.8e-08	33.3	0.0	5.5e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336255371|ref|YP_004598478.1|	-	8.8e-07	29.7	0.0	1.1e-06	29.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|336255371|ref|YP_004598478.1|	-	2.7e-05	24.3	0.0	0.025	14.7	0.0	2.1	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336255371|ref|YP_004598478.1|	-	0.00017	21.8	0.0	0.00024	21.3	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336255371|ref|YP_004598478.1|	-	0.045	13.7	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
Cation_efflux	PF01545.21	gi|336255372|ref|YP_004598479.1|	-	4.9e-37	127.6	15.0	5.9e-37	127.3	15.0	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|336255372|ref|YP_004598479.1|	-	0.0099	16.0	0.3	0.016	15.3	0.3	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
BAT	PF15915.5	gi|336255372|ref|YP_004598479.1|	-	0.093	12.6	5.8	0.15	11.9	5.8	1.3	1	0	0	1	1	1	0	GAF	and	HTH_10	associated	domain
PadR	PF03551.14	gi|336255373|ref|YP_004598480.1|	-	1.9e-17	63.0	0.7	2.4e-17	62.7	0.7	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|336255373|ref|YP_004598480.1|	-	0.011	16.2	0.0	0.014	15.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|336255373|ref|YP_004598480.1|	-	0.019	14.9	0.2	0.18	11.7	0.1	2.4	2	1	0	2	2	2	0	MarR	family
HTH_45	PF14947.6	gi|336255373|ref|YP_004598480.1|	-	0.019	15.0	0.0	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|336255373|ref|YP_004598480.1|	-	0.019	14.8	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
SprT-like	PF10263.9	gi|336255374|ref|YP_004598481.1|	-	6.4e-14	51.8	0.0	8.5e-14	51.4	0.0	1.3	1	0	0	1	1	1	1	SprT-like	family
DBD_Tnp_Mut	PF03108.15	gi|336255374|ref|YP_004598481.1|	-	0.027	14.5	1.6	0.065	13.2	1.6	1.6	1	0	0	1	1	1	0	MuDR	family	transposase
Zn_ribbon_SprT	PF17283.2	gi|336255374|ref|YP_004598481.1|	-	0.035	14.0	0.4	0.035	14.0	0.4	1.9	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
BSP	PF04450.12	gi|336255374|ref|YP_004598481.1|	-	0.036	13.9	0.0	0.044	13.6	0.0	1.3	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
Zn-ribbon_8	PF09723.10	gi|336255374|ref|YP_004598481.1|	-	0.35	11.0	1.9	1.6	8.9	0.3	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
DsbB	PF02600.16	gi|336255376|ref|YP_004598483.1|	-	0.016	15.7	0.2	0.017	15.6	0.2	1.0	1	0	0	1	1	1	0	Disulfide	bond	formation	protein	DsbB
HAD_2	PF13419.6	gi|336255377|ref|YP_004598484.1|	-	2.5e-21	76.5	0.0	3.4e-21	76.1	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336255377|ref|YP_004598484.1|	-	8.6e-13	49.1	0.1	2.2e-11	44.5	0.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336255377|ref|YP_004598484.1|	-	1.5e-09	37.7	0.1	3.3e-09	36.7	0.1	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|336255377|ref|YP_004598484.1|	-	9.4e-08	32.7	0.3	1.2e-07	32.3	0.3	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|336255377|ref|YP_004598484.1|	-	0.007	16.0	0.0	0.035	13.7	0.0	1.9	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_6	PF13344.6	gi|336255377|ref|YP_004598484.1|	-	0.017	15.2	0.0	0.033	14.3	0.0	1.4	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
NIF	PF03031.18	gi|336255377|ref|YP_004598484.1|	-	0.024	14.4	0.0	0.1	12.4	0.0	1.9	1	1	0	1	1	1	0	NLI	interacting	factor-like	phosphatase
DHQS	PF01959.16	gi|336255378|ref|YP_004598485.1|	-	8.3e-142	472.2	3.9	1.1e-141	471.8	3.9	1.2	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
QRPTase_C	PF01729.19	gi|336255378|ref|YP_004598485.1|	-	0.0002	21.2	2.3	0.041	13.6	0.2	2.6	2	0	0	2	2	2	2	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Hint	PF01079.20	gi|336255378|ref|YP_004598485.1|	-	0.0012	18.4	0.0	0.0072	15.9	0.0	2.2	2	0	0	2	2	2	1	Hint	module
TNT	PF14021.6	gi|336255378|ref|YP_004598485.1|	-	0.043	14.4	0.0	0.1	13.1	0.0	1.6	1	0	0	1	1	1	0	Tuberculosis	necrotizing	toxin
Hint_2	PF13403.6	gi|336255378|ref|YP_004598485.1|	-	0.12	12.7	3.0	13	6.1	0.1	3.2	2	1	0	3	3	3	0	Hint	domain
DZR	PF12773.7	gi|336255379|ref|YP_004598486.1|	-	4.2e-05	23.5	1.1	6e-05	23.0	1.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336255379|ref|YP_004598486.1|	-	0.00034	20.2	0.7	0.00049	19.7	0.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336255379|ref|YP_004598486.1|	-	0.00078	18.8	0.4	0.0013	18.1	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
UPF0547	PF10571.9	gi|336255379|ref|YP_004598486.1|	-	0.0021	18.1	0.3	0.0041	17.2	0.3	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zinc_ribbon_9	PF14369.6	gi|336255379|ref|YP_004598486.1|	-	0.0081	16.4	3.2	1.6	9.0	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon
zinc_ribbon_15	PF17032.5	gi|336255379|ref|YP_004598486.1|	-	0.024	15.4	0.0	0.029	15.1	0.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
Nudix_N_2	PF14803.6	gi|336255379|ref|YP_004598486.1|	-	0.037	13.9	0.4	3.6	7.6	0.1	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
YhfH	PF14149.6	gi|336255379|ref|YP_004598486.1|	-	0.31	11.0	2.1	0.51	10.4	2.1	1.3	1	0	0	1	1	1	0	YhfH-like	protein
SafA	PF17073.5	gi|336255379|ref|YP_004598486.1|	-	0.34	10.9	1.3	2	8.4	0.2	2.1	2	0	0	2	2	2	0	Two-component-system	connector	protein
zf_Rg	PF17915.1	gi|336255380|ref|YP_004598487.1|	-	0.1	12.0	0.0	0.2	11.1	0.0	1.4	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
DUF1272	PF06906.11	gi|336255380|ref|YP_004598487.1|	-	0.13	12.4	0.2	1.8	8.7	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DHquinase_I	PF01487.15	gi|336255381|ref|YP_004598488.1|	-	9.1e-46	156.9	0.1	1.1e-45	156.7	0.1	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
DUF5615	PF18480.1	gi|336255381|ref|YP_004598488.1|	-	0.14	12.0	0.2	0.34	10.7	0.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
TFIIB	PF00382.19	gi|336255382|ref|YP_004598489.1|	-	1.3e-39	134.1	0.6	4.6e-20	71.4	0.0	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336255382|ref|YP_004598489.1|	-	7e-16	57.5	12.8	9.7e-16	57.0	5.9	2.1	1	1	1	2	2	2	2	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|336255382|ref|YP_004598489.1|	-	0.0014	18.3	0.7	0.0027	17.4	0.7	1.5	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Sigma70_r4	PF04545.16	gi|336255382|ref|YP_004598489.1|	-	0.0067	15.9	0.0	0.57	9.7	0.0	3.5	3	0	0	3	3	3	1	Sigma-70,	region	4
Anti-TRAP	PF15777.5	gi|336255382|ref|YP_004598489.1|	-	0.13	12.2	0.5	0.25	11.3	0.5	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HTH_Tnp_ISL3	PF13542.6	gi|336255382|ref|YP_004598489.1|	-	0.26	10.7	1.4	0.64	9.5	0.3	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Trm112p	PF03966.16	gi|336255382|ref|YP_004598489.1|	-	2.4	8.8	5.2	8.8	7.0	3.2	2.7	2	1	0	2	2	2	0	Trm112p-like	protein
NTPase_I-T	PF01931.18	gi|336255383|ref|YP_004598490.1|	-	1.4e-50	171.2	0.0	1.6e-50	171.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
LexA_DNA_bind	PF01726.16	gi|336255384|ref|YP_004598491.1|	-	0.015	15.0	0.0	0.023	14.5	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HAD_2	PF13419.6	gi|336255385|ref|YP_004598492.1|	-	1e-06	28.9	0.0	4.5e-06	26.9	0.0	1.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336255385|ref|YP_004598492.1|	-	6.5e-06	26.6	0.0	0.00071	19.9	0.0	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|336255385|ref|YP_004598492.1|	-	0.03	14.4	0.0	0.5	10.5	0.0	2.2	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
HTH_20	PF12840.7	gi|336255386|ref|YP_004598493.1|	-	7.6e-10	38.7	0.3	0.0001	22.3	0.1	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336255386|ref|YP_004598493.1|	-	1.8e-09	37.3	0.0	2.4e-06	27.3	0.0	2.2	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336255386|ref|YP_004598493.1|	-	2.8e-09	36.7	0.5	1.1e-07	31.6	0.1	2.5	2	1	0	2	2	2	1	MarR	family
HTH_34	PF13601.6	gi|336255386|ref|YP_004598493.1|	-	1.3e-08	34.9	0.0	0.0042	17.2	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|336255386|ref|YP_004598493.1|	-	3.4e-08	33.3	0.0	0.00013	21.8	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_24	PF13412.6	gi|336255386|ref|YP_004598493.1|	-	7.6e-08	31.8	0.0	1.5e-06	27.6	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|336255386|ref|YP_004598493.1|	-	8.5e-06	25.6	0.0	0.00098	19.0	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|336255386|ref|YP_004598493.1|	-	8.9e-05	22.4	0.3	0.00031	20.7	0.0	2.0	3	0	0	3	3	2	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336255386|ref|YP_004598493.1|	-	0.00012	22.2	0.0	0.00024	21.2	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|336255386|ref|YP_004598493.1|	-	0.00024	20.8	0.8	0.0017	18.1	0.2	2.6	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255386|ref|YP_004598493.1|	-	0.00036	20.4	0.0	0.00065	19.6	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
DUF4423	PF14394.6	gi|336255386|ref|YP_004598493.1|	-	0.00055	19.7	0.0	1.2	8.8	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.9	gi|336255386|ref|YP_004598493.1|	-	0.019	15.1	0.0	0.25	11.5	0.0	2.3	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_36	PF13730.6	gi|336255386|ref|YP_004598493.1|	-	0.022	14.7	0.0	0.049	13.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|336255386|ref|YP_004598493.1|	-	0.024	14.3	0.0	0.081	12.6	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_AsnC-type	PF13404.6	gi|336255386|ref|YP_004598493.1|	-	0.034	14.0	0.0	0.11	12.4	0.0	2.0	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336255386|ref|YP_004598493.1|	-	0.063	13.8	0.1	0.3	11.6	0.0	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_10	PF04967.12	gi|336255386|ref|YP_004598493.1|	-	0.081	12.7	0.1	0.8	9.5	0.0	2.3	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Crp	PF00325.20	gi|336255386|ref|YP_004598493.1|	-	0.19	11.4	1.8	9.6	6.0	0.0	3.2	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	crp	family
Band_7	PF01145.25	gi|336255387|ref|YP_004598494.1|	-	1.2e-37	129.7	4.0	1.2e-37	129.7	4.0	2.0	2	0	0	2	2	2	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|336255387|ref|YP_004598494.1|	-	0.001	18.8	0.2	0.0021	17.8	0.2	1.5	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
NfeD	PF01957.18	gi|336255388|ref|YP_004598495.1|	-	1.7e-05	25.1	0.1	4.2e-05	23.8	0.0	1.8	1	1	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
Gamma_PGA_hydro	PF05908.11	gi|336255389|ref|YP_004598496.1|	-	1.2e-16	60.7	0.0	1.5e-16	60.3	0.0	1.0	1	0	0	1	1	1	1	Poly-gamma-glutamate	hydrolase
DeoC	PF01791.9	gi|336255390|ref|YP_004598497.1|	-	1.9e-45	155.4	0.1	2.2e-45	155.1	0.1	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.24	gi|336255390|ref|YP_004598497.1|	-	2.6e-05	23.8	0.0	3.8e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PucR	PF07905.11	gi|336255390|ref|YP_004598497.1|	-	0.027	14.8	0.1	0.38	11.0	0.0	2.4	1	1	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
OMPdecase	PF00215.24	gi|336255390|ref|YP_004598497.1|	-	0.046	13.3	0.3	0.098	12.2	0.3	1.7	1	1	0	1	1	1	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
URO-D	PF01208.17	gi|336255390|ref|YP_004598497.1|	-	0.097	11.8	0.0	0.37	9.9	0.0	1.8	1	1	1	2	2	2	0	Uroporphyrinogen	decarboxylase	(URO-D)
Trp_syntA	PF00290.20	gi|336255391|ref|YP_004598498.1|	-	1.3e-87	293.0	0.1	1.4e-87	292.8	0.1	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|336255391|ref|YP_004598498.1|	-	0.00038	20.0	0.1	0.00077	19.0	0.1	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PucR	PF07905.11	gi|336255391|ref|YP_004598498.1|	-	0.0006	20.1	0.1	0.0086	16.4	0.0	2.5	3	0	0	3	3	3	1	Purine	catabolism	regulatory	protein-like	family
PcrB	PF01884.17	gi|336255391|ref|YP_004598498.1|	-	0.002	17.6	0.6	0.088	12.3	0.2	2.2	2	0	0	2	2	2	1	PcrB	family
ThiG	PF05690.14	gi|336255391|ref|YP_004598498.1|	-	0.028	13.7	0.3	0.045	13.0	0.3	1.3	1	0	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
PALP	PF00291.25	gi|336255392|ref|YP_004598499.1|	-	3.1e-38	131.9	0.9	5.1e-38	131.2	0.9	1.3	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
IGPS	PF00218.21	gi|336255393|ref|YP_004598500.1|	-	2.3e-70	236.7	0.0	2.7e-70	236.5	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
QRPTase_C	PF01729.19	gi|336255393|ref|YP_004598500.1|	-	1.3e-06	28.3	0.2	6.1e-06	26.1	0.0	2.1	3	0	0	3	3	3	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NanE	PF04131.14	gi|336255393|ref|YP_004598500.1|	-	1.6e-05	24.2	0.1	8.5e-05	21.8	0.0	2.0	1	1	1	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
FMN_dh	PF01070.18	gi|336255393|ref|YP_004598500.1|	-	3.2e-05	23.1	0.3	5.8e-05	22.3	0.3	1.4	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|336255393|ref|YP_004598500.1|	-	7.4e-05	22.3	0.0	0.0012	18.4	0.0	2.4	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|336255393|ref|YP_004598500.1|	-	0.0056	16.0	1.3	0.034	13.4	0.2	2.2	1	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Trp_syntA	PF00290.20	gi|336255393|ref|YP_004598500.1|	-	0.017	14.0	0.2	0.033	13.0	0.0	1.5	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
PDZ	PF00595.24	gi|336255393|ref|YP_004598500.1|	-	0.14	12.5	0.1	0.4	11.1	0.0	1.8	2	0	0	2	2	2	0	PDZ	domain
DNA_binding_1	PF01035.20	gi|336255394|ref|YP_004598501.1|	-	5.2e-07	29.7	0.0	8.2e-07	29.1	0.0	1.3	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
COX1	PF00115.20	gi|336255395|ref|YP_004598502.1|	-	1.9e-60	204.9	39.6	1.9e-60	204.9	39.6	1.5	2	0	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Amidohydro_2	PF04909.14	gi|336255397|ref|YP_004598504.1|	-	1.1e-08	35.3	0.7	1.5e-08	34.8	0.7	1.3	1	1	0	1	1	1	1	Amidohydrolase
Cpn60_TCP1	PF00118.24	gi|336255398|ref|YP_004598505.1|	-	1.7e-147	492.0	15.8	1.9e-147	491.9	15.8	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Cas_Csa5	PF09702.10	gi|336255398|ref|YP_004598505.1|	-	0.11	12.7	0.8	11	6.3	0.0	3.3	3	0	0	3	3	3	0	CRISPR-associated	protein	(Cas_Csa5)
HalOD1	PF18545.1	gi|336255399|ref|YP_004598506.1|	-	2.2e-23	82.3	0.0	3e-23	81.9	0.0	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
SAM_adeno_trans	PF01887.16	gi|336255400|ref|YP_004598507.1|	-	6.7e-76	254.8	0.0	7.8e-76	254.6	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
CTP_transf_like	PF01467.26	gi|336255401|ref|YP_004598508.1|	-	9.9e-16	58.2	0.0	4.2e-15	56.2	0.0	1.9	1	1	0	1	1	1	1	Cytidylyltransferase-like
Citrate_ly_lig	PF08218.11	gi|336255401|ref|YP_004598508.1|	-	0.0014	18.4	0.0	0.0081	15.9	0.0	2.0	1	1	1	2	2	2	1	Citrate	lyase	ligase	C-terminal	domain
HIGH_NTase1	PF05636.11	gi|336255401|ref|YP_004598508.1|	-	0.15	11.2	0.0	0.25	10.5	0.0	1.3	1	0	0	1	1	1	0	HIGH	Nucleotidyl	Transferase
Lon_C	PF05362.13	gi|336255402|ref|YP_004598509.1|	-	1.2e-34	119.7	3.8	1.8e-34	119.1	3.8	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.6	gi|336255402|ref|YP_004598509.1|	-	9.6e-31	107.1	0.0	9.7e-24	84.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|336255402|ref|YP_004598509.1|	-	2.3e-17	63.1	0.1	4.9e-10	39.1	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|336255402|ref|YP_004598509.1|	-	4.3e-15	55.8	0.0	7e-09	35.6	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ChlI	PF13541.6	gi|336255402|ref|YP_004598509.1|	-	3.1e-10	39.9	0.6	7.8e-10	38.6	0.6	1.7	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA_5	PF07728.14	gi|336255402|ref|YP_004598509.1|	-	4.4e-10	39.7	0.0	0.0012	18.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|336255402|ref|YP_004598509.1|	-	1.4e-06	28.8	0.0	0.037	14.5	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|336255402|ref|YP_004598509.1|	-	1.8e-06	27.8	0.0	0.0019	18.0	0.0	2.5	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|336255402|ref|YP_004598509.1|	-	2.4e-06	26.8	0.1	0.061	12.4	0.0	2.4	2	0	0	2	2	2	2	MCM	P-loop	domain
TIP49	PF06068.13	gi|336255402|ref|YP_004598509.1|	-	6.3e-05	22.3	0.1	0.014	14.6	0.0	2.3	2	0	0	2	2	2	1	TIP49	P-loop	domain
AAA_3	PF07726.11	gi|336255402|ref|YP_004598509.1|	-	8.2e-05	22.5	0.1	0.13	12.1	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.6	gi|336255402|ref|YP_004598509.1|	-	0.00016	21.8	0.0	0.24	11.5	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|336255402|ref|YP_004598509.1|	-	0.00024	21.5	0.0	0.43	10.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|336255402|ref|YP_004598509.1|	-	0.00038	20.0	0.0	0.0012	18.4	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_22	PF13401.6	gi|336255402|ref|YP_004598509.1|	-	0.00049	20.4	0.0	0.0055	17.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|336255402|ref|YP_004598509.1|	-	0.0015	18.3	0.0	0.12	12.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_PrkA	PF08298.11	gi|336255402|ref|YP_004598509.1|	-	0.0087	15.0	0.0	0.21	10.4	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
PhoH	PF02562.16	gi|336255402|ref|YP_004598509.1|	-	0.0094	15.4	0.0	0.026	14.0	0.0	1.7	2	0	0	2	2	2	1	PhoH-like	protein
AAA_33	PF13671.6	gi|336255402|ref|YP_004598509.1|	-	0.014	15.5	0.0	0.05	13.8	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
DUF815	PF05673.13	gi|336255402|ref|YP_004598509.1|	-	0.015	14.5	0.0	0.03	13.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_2	PF07724.14	gi|336255402|ref|YP_004598509.1|	-	0.028	14.6	0.0	5.3	7.1	0.0	2.6	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
IstB_IS21	PF01695.17	gi|336255402|ref|YP_004598509.1|	-	0.032	14.0	0.0	0.072	12.8	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|336255402|ref|YP_004598509.1|	-	0.034	14.7	0.0	0.11	13.0	0.0	1.8	2	0	0	2	2	1	0	ABC	transporter
AgrB	PF04647.15	gi|336255402|ref|YP_004598509.1|	-	0.037	13.3	0.3	0.057	12.7	0.3	1.2	1	0	0	1	1	1	0	Accessory	gene	regulator	B
NACHT	PF05729.12	gi|336255402|ref|YP_004598509.1|	-	0.041	13.8	0.0	0.077	12.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
MCM_lid	PF17855.1	gi|336255402|ref|YP_004598509.1|	-	0.042	14.3	0.1	0.2	12.1	0.0	2.1	1	1	1	2	2	2	0	MCM	AAA-lid	domain
AAA_10	PF12846.7	gi|336255402|ref|YP_004598509.1|	-	0.065	12.1	0.1	0.17	10.8	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
TrwB_AAD_bind	PF10412.9	gi|336255402|ref|YP_004598509.1|	-	0.068	12.1	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CPBP	PF02517.16	gi|336255403|ref|YP_004598510.1|	-	6.1e-11	42.5	11.7	6.1e-11	42.5	11.7	2.3	2	0	0	2	2	2	1	CPBP	intramembrane	metalloprotease
DUF3742	PF12553.8	gi|336255403|ref|YP_004598510.1|	-	2.4	8.3	0.0	2.4	8.3	0.0	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3742)
ABC2_membrane_5	PF13346.6	gi|336255404|ref|YP_004598511.1|	-	0.02	14.4	5.7	0.024	14.2	5.7	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
IspA	PF04279.15	gi|336255404|ref|YP_004598511.1|	-	0.046	13.9	1.8	0.059	13.5	1.5	1.3	1	1	0	1	1	1	0	Intracellular	septation	protein	A
Glycos_transf_2	PF00535.26	gi|336255405|ref|YP_004598512.1|	-	2e-15	57.0	0.2	3.2e-15	56.3	0.2	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336255405|ref|YP_004598512.1|	-	3.3e-09	37.0	2.6	1.5e-07	31.5	2.6	2.2	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|336255405|ref|YP_004598512.1|	-	2.4e-05	23.9	0.0	6.6e-05	22.5	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Methyltransf_25	PF13649.6	gi|336255406|ref|YP_004598513.1|	-	8.2e-24	84.1	0.1	1.8e-23	83.1	0.1	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336255406|ref|YP_004598513.1|	-	1.4e-23	83.4	0.0	2.3e-23	82.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336255406|ref|YP_004598513.1|	-	8.3e-18	64.6	0.0	1.2e-17	64.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336255406|ref|YP_004598513.1|	-	1.1e-14	54.9	0.0	3.5e-14	53.4	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336255406|ref|YP_004598513.1|	-	1.8e-14	53.6	0.0	2.5e-14	53.2	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|336255406|ref|YP_004598513.1|	-	3.5e-14	53.0	0.0	4.7e-14	52.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|336255406|ref|YP_004598513.1|	-	3e-06	27.0	0.0	4.6e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
UPF0020	PF01170.18	gi|336255406|ref|YP_004598513.1|	-	4.5e-05	23.2	0.0	0.00013	21.7	0.0	1.8	2	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_9	PF08003.11	gi|336255406|ref|YP_004598513.1|	-	0.00013	21.1	0.0	0.00017	20.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MTS	PF05175.14	gi|336255406|ref|YP_004598513.1|	-	0.00062	19.4	0.0	0.00092	18.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.20	gi|336255406|ref|YP_004598513.1|	-	0.0019	17.3	0.0	0.0024	17.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_4	PF02390.17	gi|336255406|ref|YP_004598513.1|	-	0.0019	17.7	0.0	0.0029	17.1	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
CMAS	PF02353.20	gi|336255406|ref|YP_004598513.1|	-	0.0025	17.2	0.0	0.0055	16.0	0.0	1.5	1	1	1	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
TPMT	PF05724.11	gi|336255406|ref|YP_004598513.1|	-	0.0036	17.0	0.0	0.0058	16.3	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_20	PF12147.8	gi|336255406|ref|YP_004598513.1|	-	0.012	14.8	0.0	0.016	14.3	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
TehB	PF03848.14	gi|336255406|ref|YP_004598513.1|	-	0.013	15.0	0.0	0.018	14.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
NodS	PF05401.11	gi|336255406|ref|YP_004598513.1|	-	0.015	15.0	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_32	PF13679.6	gi|336255406|ref|YP_004598513.1|	-	0.024	14.7	0.0	0.033	14.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
tRNA_U5-meth_tr	PF05958.11	gi|336255406|ref|YP_004598513.1|	-	0.041	12.9	0.1	0.098	11.6	0.0	1.5	1	1	1	2	2	2	0	tRNA	(Uracil-5-)-methyltransferase
DUF938	PF06080.12	gi|336255406|ref|YP_004598513.1|	-	0.044	13.6	0.0	0.09	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_15	PF09445.10	gi|336255406|ref|YP_004598513.1|	-	0.066	12.8	0.0	0.088	12.4	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
PCMT	PF01135.19	gi|336255406|ref|YP_004598513.1|	-	0.096	12.4	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
HTH_24	PF13412.6	gi|336255407|ref|YP_004598514.1|	-	0.00016	21.2	0.0	0.00025	20.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|336255407|ref|YP_004598514.1|	-	0.00099	18.7	0.3	0.0025	17.4	0.1	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|336255407|ref|YP_004598514.1|	-	0.0013	18.6	0.1	0.0018	18.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336255407|ref|YP_004598514.1|	-	0.0015	18.5	0.4	0.0036	17.3	0.4	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|336255407|ref|YP_004598514.1|	-	0.019	14.8	0.1	0.033	14.1	0.0	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
HTH_12	PF08461.10	gi|336255407|ref|YP_004598514.1|	-	0.024	14.6	0.8	0.34	10.9	0.1	2.6	1	1	1	2	2	2	0	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.19	gi|336255407|ref|YP_004598514.1|	-	0.076	12.9	0.1	0.11	12.4	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_tail_APC	PF16778.5	gi|336255407|ref|YP_004598514.1|	-	0.084	12.8	0.8	0.19	11.7	0.1	1.8	2	0	0	2	2	2	0	Phage	tail	assembly	chaperone	protein
Lactamase_B	PF00753.27	gi|336255408|ref|YP_004598515.1|	-	8e-17	61.9	3.7	1.2e-16	61.4	3.7	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336255408|ref|YP_004598515.1|	-	0.00018	21.1	0.3	0.00035	20.1	0.3	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
BLACT_WH	PF17778.1	gi|336255408|ref|YP_004598515.1|	-	0.0015	18.5	1.0	0.0029	17.5	0.2	1.9	2	0	0	2	2	2	1	Beta-lactamase	associated	winged	helix	domain
FAD_binding_4	PF01565.23	gi|336255408|ref|YP_004598515.1|	-	0.062	13.0	0.1	0.12	12.1	0.1	1.4	1	0	0	1	1	1	0	FAD	binding	domain
Lactamase_B_3	PF13483.6	gi|336255408|ref|YP_004598515.1|	-	0.11	12.3	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
CxxCxxCC	PF03692.15	gi|336255409|ref|YP_004598516.1|	-	2.3e-13	50.6	0.0	8.3e-13	48.8	0.0	1.9	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
Glucosamine_iso	PF01182.20	gi|336255409|ref|YP_004598516.1|	-	0.029	14.2	0.9	0.11	12.4	0.0	2.0	2	0	0	2	2	2	0	Glucosamine-6-phosphate	isomerases/6-phosphogluconolactonase
SPW	PF03779.14	gi|336255410|ref|YP_004598517.1|	-	0.0049	16.4	7.7	0.0049	16.4	7.7	2.8	2	2	1	3	3	3	1	SPW	repeat
TM2	PF05154.16	gi|336255410|ref|YP_004598517.1|	-	0.041	14.2	0.3	0.041	14.2	0.3	2.5	3	0	0	3	3	3	0	TM2	domain
PcrB	PF01884.17	gi|336255411|ref|YP_004598518.1|	-	1.9e-33	115.8	0.5	4.6e-33	114.6	0.5	1.5	1	1	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|336255411|ref|YP_004598518.1|	-	0.00013	21.5	0.0	0.00023	20.7	0.0	1.4	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|336255411|ref|YP_004598518.1|	-	0.036	13.1	0.0	0.055	12.6	0.0	1.2	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
OKR_DC_1_N	PF03709.15	gi|336255411|ref|YP_004598518.1|	-	0.093	13.0	0.0	3.1	8.1	0.0	2.3	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
TRAM	PF01938.20	gi|336255412|ref|YP_004598519.1|	-	6.4e-15	54.9	4.2	7.4e-15	54.7	3.4	1.5	2	0	0	2	2	2	1	TRAM	domain
Radical_SAM	PF04055.21	gi|336255413|ref|YP_004598520.1|	-	2.4e-12	47.5	0.0	2.2e-11	44.4	0.0	2.6	2	1	0	2	2	2	1	Radical	SAM	superfamily
HHH	PF00633.23	gi|336255413|ref|YP_004598520.1|	-	0.00013	21.6	0.0	0.00041	20.1	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|336255413|ref|YP_004598520.1|	-	0.00027	21.1	0.0	0.00058	20.1	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|336255413|ref|YP_004598520.1|	-	0.0053	17.3	0.0	0.014	16.0	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
PsbU	PF06514.11	gi|336255413|ref|YP_004598520.1|	-	0.021	14.8	0.0	0.057	13.4	0.0	1.7	1	0	0	1	1	1	0	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
HHH_2	PF12826.7	gi|336255413|ref|YP_004598520.1|	-	0.051	13.7	0.0	0.16	12.1	0.0	1.8	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HSP20	PF00011.21	gi|336255415|ref|YP_004598522.1|	-	7.6e-05	22.8	0.0	0.00012	22.1	0.0	1.4	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|336255415|ref|YP_004598522.1|	-	0.12	12.0	0.0	0.34	10.5	0.0	1.8	1	0	0	1	1	1	0	HSP20-like	domain	found	in	ArsA
DAO	PF01266.24	gi|336255416|ref|YP_004598523.1|	-	3.9e-58	197.7	10.1	4.5e-58	197.5	10.1	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|336255416|ref|YP_004598523.1|	-	6e-09	35.5	2.0	0.00068	19.0	0.4	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336255416|ref|YP_004598523.1|	-	1.2e-07	31.8	3.3	1.2e-07	31.8	3.3	2.2	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
ApbA	PF02558.16	gi|336255416|ref|YP_004598523.1|	-	5.6e-06	26.1	1.0	1.1e-05	25.2	1.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_2	PF00890.24	gi|336255416|ref|YP_004598523.1|	-	3.8e-05	23.0	1.7	3.8e-05	23.0	1.7	1.8	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336255416|ref|YP_004598523.1|	-	3.9e-05	23.2	3.9	6.1e-05	22.6	3.9	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|336255416|ref|YP_004598523.1|	-	0.00017	21.5	0.7	0.00034	20.5	0.7	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|336255416|ref|YP_004598523.1|	-	0.001	19.6	0.7	0.0028	18.2	0.7	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|336255416|ref|YP_004598523.1|	-	0.0036	16.4	2.1	0.0043	16.2	1.2	1.5	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|336255416|ref|YP_004598523.1|	-	0.0037	16.0	1.1	0.0073	15.0	0.8	1.6	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|336255416|ref|YP_004598523.1|	-	0.0052	16.1	0.3	0.0099	15.2	0.3	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|336255416|ref|YP_004598523.1|	-	0.0055	17.1	0.0	0.011	16.2	0.0	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
ThiF	PF00899.21	gi|336255416|ref|YP_004598523.1|	-	0.0074	15.7	0.3	0.013	14.8	0.3	1.3	1	0	0	1	1	1	1	ThiF	family
Thi4	PF01946.17	gi|336255416|ref|YP_004598523.1|	-	0.0093	15.2	1.1	0.02	14.2	1.1	1.5	1	0	0	1	1	1	1	Thi4	family
2-Hacid_dh_C	PF02826.19	gi|336255416|ref|YP_004598523.1|	-	0.02	14.3	0.2	0.035	13.5	0.2	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|336255416|ref|YP_004598523.1|	-	0.031	13.5	1.2	0.031	13.5	1.2	2.0	2	0	0	2	2	2	0	FAD	binding	domain
Hydant_A_N	PF05378.13	gi|336255416|ref|YP_004598523.1|	-	0.069	12.9	0.2	0.14	11.8	0.1	1.5	2	0	0	2	2	1	0	Hydantoinase/oxoprolinase	N-terminal	region
NAD_binding_9	PF13454.6	gi|336255416|ref|YP_004598523.1|	-	0.069	13.1	2.3	5	7.1	0.3	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|336255416|ref|YP_004598523.1|	-	0.069	12.4	2.2	1.9	7.7	0.3	2.4	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_binding_2	PF03446.15	gi|336255416|ref|YP_004598523.1|	-	0.1	12.7	0.3	0.23	11.6	0.1	1.7	2	0	0	2	2	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|336255416|ref|YP_004598523.1|	-	0.14	11.7	0.1	0.21	11.1	0.1	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NUDIX	PF00293.28	gi|336255418|ref|YP_004598525.1|	-	7.8e-14	51.8	0.1	1.1e-13	51.4	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
DUF3943	PF13084.6	gi|336255418|ref|YP_004598525.1|	-	0.15	12.0	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3943)
PUB_1	PF18486.1	gi|336255419|ref|YP_004598526.1|	-	0.0093	15.8	2.1	0.018	14.9	0.2	2.1	2	0	0	2	2	2	1	PNGase/UBA-	or	UBX-containing	domain
HupF_HypC	PF01455.18	gi|336255420|ref|YP_004598527.1|	-	0.16	12.1	0.1	0.81	9.9	0.0	2.1	2	0	0	2	2	2	0	HupF/HypC	family
PhnA_Zn_Ribbon	PF08274.12	gi|336255421|ref|YP_004598528.1|	-	0.0015	18.5	1.3	0.025	14.5	0.1	2.2	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
DZR	PF12773.7	gi|336255421|ref|YP_004598528.1|	-	0.0079	16.2	0.3	0.011	15.8	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|336255421|ref|YP_004598528.1|	-	0.026	14.5	1.2	0.095	12.7	1.2	1.7	1	1	0	1	1	1	0	zinc-ribbons
zinc_ribbon_9	PF14369.6	gi|336255421|ref|YP_004598528.1|	-	0.047	13.9	1.9	0.078	13.3	1.9	1.4	1	1	0	1	1	1	0	zinc-ribbon
Nudix_N_2	PF14803.6	gi|336255421|ref|YP_004598528.1|	-	0.14	12.1	2.9	0.4	10.7	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
PfkB	PF00294.24	gi|336255422|ref|YP_004598529.1|	-	1.7e-15	57.1	4.6	1.2e-12	47.8	2.4	2.1	2	0	0	2	2	2	2	pfkB	family	carbohydrate	kinase
DHHA1	PF02272.19	gi|336255423|ref|YP_004598530.1|	-	7.2e-11	42.7	0.1	1.3e-10	41.8	0.1	1.3	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|336255423|ref|YP_004598530.1|	-	5.2e-10	39.5	0.0	8.4e-10	38.8	0.0	1.3	1	0	0	1	1	1	1	DHH	family
Epimerase	PF01370.21	gi|336255424|ref|YP_004598531.1|	-	7.4e-17	61.6	0.0	1.1e-16	61.1	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|336255424|ref|YP_004598531.1|	-	6.3e-15	55.5	0.0	8.6e-15	55.1	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
3Beta_HSD	PF01073.19	gi|336255424|ref|YP_004598531.1|	-	3.1e-08	33.0	0.0	2.4e-07	30.1	0.0	2.0	1	1	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.18	gi|336255424|ref|YP_004598531.1|	-	3.5e-08	33.7	0.7	8e-08	32.5	0.4	1.7	2	0	0	2	2	2	1	TrkA-N	domain
GDP_Man_Dehyd	PF16363.5	gi|336255424|ref|YP_004598531.1|	-	1.4e-07	31.3	0.0	4.8e-07	29.5	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
ApbA	PF02558.16	gi|336255424|ref|YP_004598531.1|	-	6.5e-06	25.9	0.1	1.2e-05	25.0	0.1	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
UDPG_MGDP_dh_N	PF03721.14	gi|336255424|ref|YP_004598531.1|	-	4.5e-05	23.1	0.0	7.3e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336255424|ref|YP_004598531.1|	-	6.2e-05	23.5	0.1	0.00013	22.5	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|336255424|ref|YP_004598531.1|	-	0.00028	21.4	0.2	0.00071	20.1	0.2	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DUF1731	PF08338.11	gi|336255424|ref|YP_004598531.1|	-	0.00037	20.3	0.0	0.00078	19.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1731)
NAD_binding_2	PF03446.15	gi|336255424|ref|YP_004598531.1|	-	0.0063	16.7	0.0	0.013	15.7	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|336255424|ref|YP_004598531.1|	-	0.0096	16.7	0.1	0.025	15.4	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
RmlD_sub_bind	PF04321.17	gi|336255424|ref|YP_004598531.1|	-	0.016	14.3	0.2	0.083	12.0	0.1	2.0	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
Pyr_redox_2	PF07992.14	gi|336255424|ref|YP_004598531.1|	-	0.03	13.6	0.2	0.043	13.0	0.2	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|336255424|ref|YP_004598531.1|	-	0.031	14.2	0.3	0.1	12.4	0.1	1.9	1	1	1	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.25	gi|336255424|ref|YP_004598531.1|	-	0.053	13.0	0.3	0.15	11.5	0.1	1.7	1	1	1	2	2	2	0	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|336255424|ref|YP_004598531.1|	-	0.18	11.1	0.0	0.32	10.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Methyltransf_18	PF12847.7	gi|336255425|ref|YP_004598532.1|	-	0.1	12.6	0.1	0.15	12.0	0.1	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
HTH_18	PF12833.7	gi|336255426|ref|YP_004598533.1|	-	0.15	12.3	1.5	0.78	10.0	0.3	2.0	1	1	1	2	2	2	0	Helix-turn-helix	domain
GFO_IDH_MocA	PF01408.22	gi|336255427|ref|YP_004598534.1|	-	3.2e-25	89.3	0.1	5.1e-25	88.6	0.1	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336255427|ref|YP_004598534.1|	-	3.9e-10	39.7	0.0	9.8e-10	38.5	0.0	1.7	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
2-Hacid_dh_C	PF02826.19	gi|336255427|ref|YP_004598534.1|	-	9.2e-05	21.9	0.0	0.00015	21.1	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|336255427|ref|YP_004598534.1|	-	0.00012	22.3	0.0	0.001	19.3	0.0	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|336255427|ref|YP_004598534.1|	-	0.00023	21.7	0.0	0.00045	20.7	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
CoA_binding	PF02629.19	gi|336255427|ref|YP_004598534.1|	-	0.0028	18.3	0.0	0.0078	16.9	0.0	1.7	2	0	0	2	2	2	1	CoA	binding	domain
IlvN	PF07991.12	gi|336255427|ref|YP_004598534.1|	-	0.0033	17.0	0.0	0.006	16.2	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_3	PF03447.16	gi|336255427|ref|YP_004598534.1|	-	0.0091	16.6	0.1	0.015	15.9	0.1	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Oxidored_q3	PF00499.20	gi|336255428|ref|YP_004598535.1|	-	0.018	14.8	0.0	0.02	14.6	0.0	1.1	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
ABC_tran	PF00005.27	gi|336255429|ref|YP_004598536.1|	-	1.4e-33	116.3	0.0	2.4e-33	115.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336255429|ref|YP_004598536.1|	-	3.9e-12	46.8	0.1	1.2e-11	45.2	0.1	1.9	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336255429|ref|YP_004598536.1|	-	7.7e-07	29.2	0.0	0.013	15.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336255429|ref|YP_004598536.1|	-	1.4e-06	27.9	0.2	8.9e-06	25.3	0.2	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
CysA_C_terminal	PF17850.1	gi|336255429|ref|YP_004598536.1|	-	2e-05	25.0	0.3	0.001	19.6	0.1	2.8	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
TOBE_2	PF08402.10	gi|336255429|ref|YP_004598536.1|	-	6.8e-05	23.0	0.2	0.0042	17.2	0.1	2.8	1	1	0	1	1	1	1	TOBE	domain
AAA_15	PF13175.6	gi|336255429|ref|YP_004598536.1|	-	0.00055	19.8	0.0	0.2	11.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336255429|ref|YP_004598536.1|	-	0.0032	17.2	0.2	0.029	14.1	0.0	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255429|ref|YP_004598536.1|	-	0.0038	17.1	0.1	0.019	14.9	0.0	1.9	2	0	0	2	2	2	1	RsgA	GTPase
Rad17	PF03215.15	gi|336255429|ref|YP_004598536.1|	-	0.012	15.5	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
TOBE	PF03459.17	gi|336255429|ref|YP_004598536.1|	-	0.017	15.4	0.1	0.55	10.6	0.0	2.9	2	1	0	2	2	2	0	TOBE	domain
AAA_16	PF13191.6	gi|336255429|ref|YP_004598536.1|	-	0.02	15.3	0.0	0.054	13.9	0.0	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336255429|ref|YP_004598536.1|	-	0.026	14.8	0.4	0.068	13.5	0.4	1.8	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336255429|ref|YP_004598536.1|	-	0.058	13.8	0.4	0.16	12.4	0.4	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|336255429|ref|YP_004598536.1|	-	0.078	13.4	0.0	0.19	12.1	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_33	PF13671.6	gi|336255429|ref|YP_004598536.1|	-	0.14	12.3	1.3	0.44	10.7	1.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|336255429|ref|YP_004598536.1|	-	0.17	11.4	0.0	0.31	10.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
BPD_transp_1	PF00528.22	gi|336255430|ref|YP_004598537.1|	-	1.5e-11	44.4	19.0	1.5e-11	44.4	19.0	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2207	PF09972.9	gi|336255430|ref|YP_004598537.1|	-	2.4	6.8	8.9	9.9	4.8	4.7	2.8	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2207)
BPD_transp_1	PF00528.22	gi|336255431|ref|YP_004598538.1|	-	5.6e-15	55.6	15.0	5.6e-15	55.6	15.0	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2157	PF09925.9	gi|336255431|ref|YP_004598538.1|	-	5.2	6.9	9.8	0.62	9.8	2.0	2.8	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
SBP_bac_1	PF01547.25	gi|336255432|ref|YP_004598539.1|	-	1.2e-24	87.8	0.8	2.1e-24	87.1	0.8	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|336255432|ref|YP_004598539.1|	-	6e-20	72.2	0.9	9.4e-20	71.6	0.9	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336255432|ref|YP_004598539.1|	-	5.2e-06	26.1	1.2	5.2e-06	26.1	1.2	2.1	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyco_hydro_18	PF00704.28	gi|336255432|ref|YP_004598539.1|	-	0.0044	16.8	0.0	0.011	15.5	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	18
Regulator_TrmB	PF11495.8	gi|336255433|ref|YP_004598540.1|	-	2.3e-67	226.6	0.1	2.9e-67	226.3	0.1	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|336255433|ref|YP_004598540.1|	-	6.5e-16	58.0	0.0	1.4e-15	56.9	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336255433|ref|YP_004598540.1|	-	0.00011	22.0	1.4	0.0025	17.6	0.0	3.0	3	0	0	3	3	3	1	MarR	family
T2SSM	PF04612.12	gi|336255433|ref|YP_004598540.1|	-	0.0054	16.8	0.7	0.0096	16.0	0.7	1.3	1	0	0	1	1	1	1	Type	II	secretion	system	(T2SS),	protein	M
HTH_IclR	PF09339.10	gi|336255433|ref|YP_004598540.1|	-	0.014	15.2	0.1	0.058	13.2	0.0	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|336255433|ref|YP_004598540.1|	-	0.015	15.3	0.0	0.037	14.0	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|336255433|ref|YP_004598540.1|	-	0.034	14.6	0.1	0.32	11.5	0.0	2.6	2	1	1	3	3	3	0	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|336255433|ref|YP_004598540.1|	-	0.058	13.3	0.0	0.16	11.9	0.0	1.9	1	0	0	1	1	1	0	MarR	family
DUF4159	PF13709.6	gi|336255433|ref|YP_004598540.1|	-	0.16	11.4	0.0	0.25	10.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4159)
Latarcin	PF10279.9	gi|336255433|ref|YP_004598540.1|	-	0.16	12.4	0.2	0.37	11.2	0.2	1.6	1	0	0	1	1	1	0	Latarcin	precursor
ABC_tran_CTD	PF16326.5	gi|336255433|ref|YP_004598540.1|	-	6.3	7.1	7.6	0.33	11.2	0.5	2.4	3	0	0	3	3	3	0	ABC	transporter	C-terminal	domain
TerY_C	PF15616.6	gi|336255434|ref|YP_004598541.1|	-	0.0094	16.1	1.9	0.017	15.2	1.9	1.3	1	0	0	1	1	1	1	TerY-C	metal	binding	domain
zf-NADH-PPase	PF09297.11	gi|336255434|ref|YP_004598541.1|	-	0.062	13.0	2.2	6.6	6.5	0.1	2.6	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336255434|ref|YP_004598541.1|	-	0.3	11.1	2.9	7.9	6.5	0.4	2.4	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336255434|ref|YP_004598541.1|	-	0.4	10.9	4.7	5.3	7.2	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336255434|ref|YP_004598541.1|	-	0.57	10.2	2.9	2.9	7.9	2.9	2.0	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.6	gi|336255434|ref|YP_004598541.1|	-	0.62	9.5	6.2	0.31	10.5	1.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|336255434|ref|YP_004598541.1|	-	0.84	9.9	3.6	25	5.2	0.0	2.5	2	0	0	2	2	2	0	zinc-ribbon
Rubredoxin	PF00301.20	gi|336255434|ref|YP_004598541.1|	-	3.9	7.6	6.4	3.7	7.7	0.1	3.2	3	0	0	3	3	3	0	Rubredoxin
GPDPase_memb	PF10110.9	gi|336255435|ref|YP_004598542.1|	-	1.5e-05	24.0	0.1	1.5e-05	24.0	0.1	2.1	1	1	1	2	2	2	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF975	PF06161.11	gi|336255435|ref|YP_004598542.1|	-	0.0032	17.3	4.5	0.0061	16.4	4.2	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF975)
UPF0259	PF06790.11	gi|336255435|ref|YP_004598542.1|	-	0.0082	15.9	4.2	0.0082	15.9	4.2	1.9	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0259)
DUF4271	PF14093.6	gi|336255435|ref|YP_004598542.1|	-	0.089	12.7	5.5	0.16	11.9	5.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4271)
YpmT	PF17431.2	gi|336255435|ref|YP_004598542.1|	-	0.17	11.9	0.3	0.17	11.9	0.3	1.9	2	0	0	2	2	2	0	Uncharacterized	YmpT-like
Osw5	PF17062.5	gi|336255435|ref|YP_004598542.1|	-	0.44	10.7	11.1	1.2	9.3	11.1	1.7	1	0	0	1	1	1	0	Outer	spore	wall	5
Sec62	PF03839.16	gi|336255435|ref|YP_004598542.1|	-	3.5	7.1	6.0	0.56	9.7	2.2	1.6	2	0	0	2	2	2	0	Translocation	protein	Sec62
PfkB	PF00294.24	gi|336255436|ref|YP_004598543.1|	-	3.7e-64	216.9	0.0	4.2e-64	216.7	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
SCFA_trans	PF02667.14	gi|336255437|ref|YP_004598544.1|	-	1.1e-37	130.2	14.3	1.3e-37	129.9	14.3	1.1	1	0	0	1	1	1	1	Short	chain	fatty	acid	transporter
SCFA_trans	PF02667.14	gi|336255438|ref|YP_004598545.1|	-	7.2e-111	371.4	21.1	8.8e-111	371.1	21.1	1.1	1	0	0	1	1	1	1	Short	chain	fatty	acid	transporter
DUF1648	PF07853.11	gi|336255438|ref|YP_004598545.1|	-	0.0018	17.9	0.3	0.014	15.0	0.3	2.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1648)
Glyco_hydro_3	PF00933.21	gi|336255439|ref|YP_004598546.1|	-	2.3e-64	217.8	0.0	3e-64	217.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336255439|ref|YP_004598546.1|	-	1e-37	130.1	0.0	2.9e-37	128.6	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336255439|ref|YP_004598546.1|	-	8.6e-16	57.8	1.8	2.8e-15	56.2	0.2	2.3	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
TAT_signal	PF10518.9	gi|336255439|ref|YP_004598546.1|	-	0.00018	21.2	6.0	0.00044	20.0	6.0	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CAT	PF00302.18	gi|336255440|ref|YP_004598547.1|	-	0.17	11.8	0.0	0.24	11.3	0.0	1.2	1	0	0	1	1	1	0	Chloramphenicol	acetyltransferase
FliT	PF05400.13	gi|336255440|ref|YP_004598547.1|	-	3.7	8.4	8.1	1.5	9.7	2.3	2.6	3	0	0	3	3	3	0	Flagellar	protein	FliT
Nitroreductase	PF00881.24	gi|336255441|ref|YP_004598548.1|	-	2.1e-21	76.7	0.5	1.5e-11	44.6	0.0	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|336255441|ref|YP_004598548.1|	-	5.2e-06	26.2	0.0	0.0002	21.0	0.0	2.1	2	0	0	2	2	2	2	Putative	TM	nitroreductase
Meth_synt_2	PF01717.18	gi|336255442|ref|YP_004598549.1|	-	1.3e-58	198.8	0.0	2e-58	198.2	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|336255442|ref|YP_004598549.1|	-	7.2e-14	52.0	0.0	1.1e-13	51.4	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|336255442|ref|YP_004598549.1|	-	7.3e-05	22.1	0.0	0.00011	21.4	0.0	1.3	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
YbaB_DNA_bd	PF02575.16	gi|336255442|ref|YP_004598549.1|	-	0.12	12.6	0.0	0.85	9.9	0.0	2.4	2	1	0	2	2	2	0	YbaB/EbfC	DNA-binding	family
Meth_synt_1	PF08267.12	gi|336255443|ref|YP_004598550.1|	-	1.2e-14	54.6	0.0	7.1e-14	52.0	0.0	1.8	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|336255443|ref|YP_004598550.1|	-	3.6e-11	42.9	0.0	5.1e-11	42.4	0.0	1.1	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
GntP_permease	PF02447.16	gi|336255444|ref|YP_004598551.1|	-	2.4e-92	309.9	25.0	2.8e-92	309.7	25.0	1.0	1	0	0	1	1	1	1	GntP	family	permease
CitMHS	PF03600.16	gi|336255444|ref|YP_004598551.1|	-	9.1e-17	61.2	26.4	9.1e-17	61.2	26.4	2.1	2	1	0	2	2	2	1	Citrate	transporter
Methyltransf_25	PF13649.6	gi|336255445|ref|YP_004598552.1|	-	5.6e-08	33.4	0.0	2.3e-07	31.4	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336255445|ref|YP_004598552.1|	-	8.3e-08	32.8	0.0	1.2e-06	29.1	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|336255445|ref|YP_004598552.1|	-	8.4e-06	25.4	0.0	2.9e-05	23.7	0.0	1.9	2	1	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|336255445|ref|YP_004598552.1|	-	0.00013	22.6	0.0	0.0018	18.9	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336255445|ref|YP_004598552.1|	-	0.00015	21.6	0.0	0.00023	21.0	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336255445|ref|YP_004598552.1|	-	0.0022	17.9	0.0	0.016	15.0	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|336255445|ref|YP_004598552.1|	-	0.046	13.1	0.0	0.069	12.5	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.6	gi|336255445|ref|YP_004598552.1|	-	0.054	13.5	0.0	0.075	13.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0146	PF03686.13	gi|336255445|ref|YP_004598552.1|	-	0.16	11.8	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
MS_channel	PF00924.18	gi|336255446|ref|YP_004598553.1|	-	1.5e-46	158.6	0.1	2.3e-46	157.9	0.1	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
MIG-14_Wnt-bd	PF06664.12	gi|336255446|ref|YP_004598553.1|	-	0.15	11.2	1.0	0.83	8.8	1.7	1.7	2	0	0	2	2	2	0	Wnt-binding	factor	required	for	Wnt	secretion
PAP2	PF01569.21	gi|336255446|ref|YP_004598553.1|	-	9.1	6.1	6.5	1.2	8.9	0.7	2.2	1	1	1	2	2	2	0	PAP2	superfamily
RrnaAD	PF00398.20	gi|336255447|ref|YP_004598554.1|	-	3e-49	167.5	0.0	3.8e-49	167.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|336255447|ref|YP_004598554.1|	-	0.0014	19.3	0.1	0.0037	17.9	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
NodS	PF05401.11	gi|336255447|ref|YP_004598554.1|	-	0.018	14.6	0.0	0.04	13.5	0.0	1.5	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_12	PF08242.12	gi|336255447|ref|YP_004598554.1|	-	0.02	15.7	0.2	0.053	14.3	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
Glyco_hydro_4C	PF11975.8	gi|336255447|ref|YP_004598554.1|	-	0.02	15.0	0.0	0.029	14.4	0.0	1.3	1	0	0	1	1	1	0	Family	4	glycosyl	hydrolase	C-terminal	domain
Methyltransf_11	PF08241.12	gi|336255447|ref|YP_004598554.1|	-	0.035	14.8	0.1	0.084	13.5	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Spermine_synth	PF01564.17	gi|336255447|ref|YP_004598554.1|	-	0.092	12.1	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Spermine/spermidine	synthase	domain
Usp	PF00582.26	gi|336255448|ref|YP_004598555.1|	-	1.3e-22	80.9	1.0	1.8e-22	80.4	1.0	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|336255448|ref|YP_004598555.1|	-	0.031	13.7	0.7	0.14	11.6	0.7	1.8	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
TOBE	PF03459.17	gi|336255448|ref|YP_004598555.1|	-	0.56	10.5	3.4	1.2	9.5	0.5	2.2	2	0	0	2	2	2	0	TOBE	domain
DUF655	PF04919.12	gi|336255449|ref|YP_004598556.1|	-	7e-63	211.8	0.3	8.1e-63	211.6	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_3	PF12836.7	gi|336255449|ref|YP_004598556.1|	-	0.00074	19.7	0.0	0.0013	18.9	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_6	PF14579.6	gi|336255449|ref|YP_004598556.1|	-	0.0038	17.5	0.0	0.007	16.6	0.0	1.5	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|336255449|ref|YP_004598556.1|	-	0.25	12.0	0.9	2	9.1	0.4	2.5	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
RNA_pol_Rpb4	PF03874.16	gi|336255450|ref|YP_004598557.1|	-	1.3e-11	44.8	1.4	1.7e-11	44.5	1.4	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
Arg_decarbox_C	PF17944.1	gi|336255450|ref|YP_004598557.1|	-	0.024	15.2	1.1	3.8	8.1	0.3	2.5	2	0	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
DUF1507	PF07408.11	gi|336255450|ref|YP_004598557.1|	-	0.025	14.4	0.1	0.16	11.8	0.0	2.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1507)
RNA_pol_Rpb1_6	PF04992.14	gi|336255450|ref|YP_004598557.1|	-	0.032	14.1	0.6	0.043	13.6	0.6	1.5	1	1	0	1	1	1	0	RNA	polymerase	Rpb1,	domain	6
CRR7	PF12095.8	gi|336255450|ref|YP_004598557.1|	-	0.037	14.5	4.5	0.77	10.2	0.4	2.2	1	1	1	2	2	2	0	Protein	CHLORORESPIRATORY	REDUCTION	7
DUF3106	PF11304.8	gi|336255450|ref|YP_004598557.1|	-	0.048	14.1	0.1	0.61	10.6	0.1	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3106)
Cas9_a	PF18470.1	gi|336255450|ref|YP_004598557.1|	-	0.073	12.6	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	Cas9	alpha-helical	lobe	domain
Ribosomal_L21e	PF01157.18	gi|336255451|ref|YP_004598558.1|	-	2.1e-33	114.2	0.2	2.3e-33	114.0	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
Myosin_N	PF02736.19	gi|336255451|ref|YP_004598558.1|	-	0.24	11.2	1.3	0.81	9.6	0.6	1.9	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
Cys_Met_Meta_PP	PF01053.20	gi|336255453|ref|YP_004598560.1|	-	5.5e-153	509.0	0.0	6.2e-153	508.8	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Met_gamma_lyase	PF06838.11	gi|336255453|ref|YP_004598560.1|	-	6.9e-05	21.5	0.0	0.0001	21.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	gamma-lyase
Aminotran_5	PF00266.19	gi|336255453|ref|YP_004598560.1|	-	0.00015	20.9	0.0	0.00023	20.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|336255453|ref|YP_004598560.1|	-	0.0074	15.6	0.1	0.021	14.2	0.0	1.5	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
BRK	PF07533.16	gi|336255453|ref|YP_004598560.1|	-	0.03	14.0	0.1	0.97	9.1	0.0	2.5	2	0	0	2	2	2	0	BRK	domain
Lactamase_B	PF00753.27	gi|336255454|ref|YP_004598561.1|	-	1.2e-19	71.1	10.2	1.6e-19	70.7	10.2	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336255454|ref|YP_004598561.1|	-	0.0015	18.0	0.6	0.0015	18.0	0.6	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lig_C	PF18330.1	gi|336255455|ref|YP_004598562.1|	-	3.8e-42	143.2	0.3	6e-42	142.6	0.3	1.3	1	0	0	1	1	1	1	Ligase	Pab1020	C-terminal	region
RNA_ligase	PF09414.10	gi|336255455|ref|YP_004598562.1|	-	1.9e-14	54.3	0.0	3.3e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_A_M	PF01068.21	gi|336255455|ref|YP_004598562.1|	-	0.0064	16.2	0.0	2.8	7.6	0.0	2.4	1	1	0	2	2	2	2	ATP	dependent	DNA	ligase	domain
PIN_5	PF08745.11	gi|336255457|ref|YP_004598564.1|	-	5.2e-81	271.0	0.5	5.9e-81	270.8	0.5	1.0	1	0	0	1	1	1	1	PINc	domain	ribonuclease
CorA	PF01544.18	gi|336255457|ref|YP_004598564.1|	-	0.018	14.3	0.4	0.029	13.7	0.4	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
MEDS	PF14417.6	gi|336255457|ref|YP_004598564.1|	-	0.03	14.2	0.1	0.044	13.6	0.1	1.3	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
VAPB_antitox	PF02697.14	gi|336255457|ref|YP_004598564.1|	-	0.14	12.9	2.2	3.6	8.4	0.0	3.2	3	1	1	4	4	4	0	Putative	antitoxin
MFS_1	PF07690.16	gi|336255458|ref|YP_004598565.1|	-	1.2e-44	152.7	47.8	6.7e-41	140.4	44.9	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|336255458|ref|YP_004598565.1|	-	3.9e-06	26.0	34.9	0.00052	19.0	7.7	3.3	2	1	1	3	3	3	3	Sugar	(and	other)	transporter
LacY_symp	PF01306.19	gi|336255458|ref|YP_004598565.1|	-	1.7	7.4	11.7	0.0082	15.0	2.1	2.0	2	1	1	3	3	3	0	LacY	proton/sugar	symporter
MFS_1_like	PF12832.7	gi|336255458|ref|YP_004598565.1|	-	4.2	6.1	18.4	0.99	8.2	0.2	3.2	2	1	0	3	3	3	0	MFS_1	like	family
EF1_GNE	PF00736.19	gi|336255459|ref|YP_004598566.1|	-	6e-19	68.0	0.0	6.5e-19	67.9	0.0	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF3073	PF11273.8	gi|336255459|ref|YP_004598566.1|	-	0.19	12.5	0.0	0.26	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3073)
DUF1610	PF07754.11	gi|336255460|ref|YP_004598567.1|	-	2.3e-07	30.7	10.6	8.9e-07	28.8	4.3	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
C1_2	PF03107.16	gi|336255460|ref|YP_004598567.1|	-	0.00041	20.6	11.1	0.019	15.2	0.7	2.2	1	1	1	2	2	2	2	C1	domain
zf-Mss51	PF13824.6	gi|336255460|ref|YP_004598567.1|	-	0.0058	16.7	11.3	0.62	10.2	2.4	2.8	1	1	1	2	2	2	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ACC	PF17848.1	gi|336255460|ref|YP_004598567.1|	-	0.0061	16.6	0.4	0.0061	16.6	0.4	3.8	3	1	1	4	4	4	1	Acetyl-coA	carboxylase	zinc	finger	domain
Rhodanese_C	PF12368.8	gi|336255460|ref|YP_004598567.1|	-	0.007	16.7	9.1	0.0077	16.6	9.1	1.1	1	0	0	1	1	1	1	Rhodanase	C-terminal
DZR	PF12773.7	gi|336255460|ref|YP_004598567.1|	-	0.012	15.6	14.6	0.059	13.4	2.2	2.2	1	1	1	2	2	2	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|336255460|ref|YP_004598567.1|	-	0.015	15.2	6.6	0.015	15.2	6.6	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|336255460|ref|YP_004598567.1|	-	0.017	14.5	14.9	2.9	7.4	0.1	3.8	3	1	0	3	3	3	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|336255460|ref|YP_004598567.1|	-	0.018	14.7	11.3	0.33	10.7	1.0	3.1	2	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-CHY	PF05495.12	gi|336255460|ref|YP_004598567.1|	-	0.024	15.1	11.0	0.076	13.5	7.2	2.0	1	1	1	2	2	2	0	CHY	zinc	finger
C1_1	PF00130.22	gi|336255460|ref|YP_004598567.1|	-	0.028	14.3	9.6	0.87	9.5	6.4	2.4	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HscB_4_cys	PF18256.1	gi|336255460|ref|YP_004598567.1|	-	0.05	13.4	1.4	0.05	13.4	1.4	2.9	2	1	1	3	3	3	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
HypA	PF01155.19	gi|336255460|ref|YP_004598567.1|	-	0.05	13.6	11.6	0.095	12.7	1.0	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|336255460|ref|YP_004598567.1|	-	0.072	13.1	11.6	0.73	9.9	11.6	2.0	1	1	0	1	1	1	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|336255460|ref|YP_004598567.1|	-	0.086	13.0	18.8	2.9	8.1	0.6	3.8	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-MYND	PF01753.18	gi|336255460|ref|YP_004598567.1|	-	0.11	12.7	10.3	1.4	9.1	0.5	2.2	2	1	0	2	2	2	0	MYND	finger
zf_UBZ	PF18439.1	gi|336255460|ref|YP_004598567.1|	-	0.14	11.8	16.0	0.27	10.8	0.5	3.9	2	1	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS91	PF14319.6	gi|336255460|ref|YP_004598567.1|	-	0.17	12.0	9.8	0.29	11.2	9.8	1.5	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
NMDAR2_C	PF10565.9	gi|336255460|ref|YP_004598567.1|	-	0.17	10.7	6.0	0.18	10.6	6.0	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
zf-UBP	PF02148.19	gi|336255460|ref|YP_004598567.1|	-	0.17	12.2	1.2	0.17	12.2	1.2	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
PolC_DP2	PF03833.13	gi|336255460|ref|YP_004598567.1|	-	0.18	9.7	7.5	0.19	9.5	7.5	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
Rubredoxin_2	PF18073.1	gi|336255460|ref|YP_004598567.1|	-	0.27	11.0	17.6	2	8.2	0.1	3.9	3	1	0	3	3	3	0	Rubredoxin	metal	binding	domain
Zn_ribbon_SprT	PF17283.2	gi|336255460|ref|YP_004598567.1|	-	0.39	10.7	18.2	8	6.5	0.2	4.0	3	1	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zf-C2HC5	PF06221.13	gi|336255460|ref|YP_004598567.1|	-	0.39	10.7	10.4	0.29	11.1	5.4	2.1	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-C2H2_11	PF16622.5	gi|336255460|ref|YP_004598567.1|	-	0.42	10.4	9.6	6.4	6.6	0.1	3.8	4	0	0	4	4	4	0	zinc-finger	C2H2-type
UPF0547	PF10571.9	gi|336255460|ref|YP_004598567.1|	-	0.62	10.2	17.1	1.4	9.0	0.2	3.5	3	1	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|336255460|ref|YP_004598567.1|	-	0.64	9.8	16.4	2.4	8.0	4.3	3.8	2	2	0	2	2	2	0	zinc-ribbon	domain
zf-AN1	PF01428.16	gi|336255460|ref|YP_004598567.1|	-	0.67	10.2	11.4	3.3	8.0	1.5	2.6	1	1	1	3	3	3	0	AN1-like	Zinc	finger
Sgf11	PF08209.11	gi|336255460|ref|YP_004598567.1|	-	0.7	9.5	16.3	0.34	10.5	1.4	3.9	1	1	3	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
NMD3	PF04981.13	gi|336255460|ref|YP_004598567.1|	-	0.76	9.2	9.3	0.89	9.0	9.3	1.0	1	0	0	1	1	1	0	NMD3	family
zf-UBR	PF02207.20	gi|336255460|ref|YP_004598567.1|	-	0.84	9.9	11.7	16	5.7	11.7	2.4	1	1	0	1	1	1	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
DUF2752	PF10825.8	gi|336255460|ref|YP_004598567.1|	-	0.92	9.6	5.5	22	5.2	0.4	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2752)
YhfH	PF14149.6	gi|336255460|ref|YP_004598567.1|	-	1.3	9.1	16.2	25	5.0	0.1	3.4	1	1	2	3	3	3	0	YhfH-like	protein
zinc_ribbon_10	PF10058.9	gi|336255460|ref|YP_004598567.1|	-	1.4	8.8	14.3	9.2	6.1	0.6	3.6	1	1	3	4	4	4	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-C2H2	PF00096.26	gi|336255460|ref|YP_004598567.1|	-	1.6	9.3	15.2	3.5	8.3	0.7	3.7	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
DUF2387	PF09526.10	gi|336255460|ref|YP_004598567.1|	-	1.7	8.8	11.0	2.4	8.4	0.2	2.4	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
NRDD	PF13597.6	gi|336255460|ref|YP_004598567.1|	-	2	7.1	10.3	1.6	7.4	0.6	2.0	1	1	1	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-HIT	PF04438.16	gi|336255460|ref|YP_004598567.1|	-	2.2	8.2	17.7	6.8	6.7	3.0	3.5	1	1	2	3	3	3	0	HIT	zinc	finger
zf-C2H2_6	PF13912.6	gi|336255460|ref|YP_004598567.1|	-	2.5	8.2	7.7	5.5	7.1	0.1	3.2	3	0	0	3	3	3	0	C2H2-type	zinc	finger
A2L_zn_ribbon	PF08792.10	gi|336255460|ref|YP_004598567.1|	-	5.2	6.9	15.2	4.9	7.0	4.0	3.8	1	1	2	3	3	3	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336255460|ref|YP_004598567.1|	-	7.4	6.6	20.9	21	5.2	4.7	3.6	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF1451	PF07295.11	gi|336255460|ref|YP_004598567.1|	-	7.7	6.5	8.9	11	6.0	6.0	2.0	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
Anti-TRAP	PF15777.5	gi|336255460|ref|YP_004598567.1|	-	9.8	6.2	12.7	6	6.9	6.1	2.5	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Nre_N	PF04894.12	gi|336255461|ref|YP_004598568.1|	-	2.3e-95	319.5	0.0	2.8e-95	319.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|336255461|ref|YP_004598568.1|	-	7.2e-41	138.5	0.1	1.3e-40	137.7	0.1	1.4	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
CSD	PF00313.22	gi|336255462|ref|YP_004598569.1|	-	6.8e-20	70.7	0.2	7.4e-20	70.6	0.2	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|336255462|ref|YP_004598569.1|	-	0.034	13.8	3.0	0.05	13.3	3.0	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
S1-like	PF14444.6	gi|336255462|ref|YP_004598569.1|	-	0.12	12.3	1.1	0.16	11.9	1.1	1.5	1	1	0	1	1	1	0	S1-like
Na_H_antiporter	PF03553.14	gi|336255464|ref|YP_004598571.1|	-	1.6e-62	211.5	37.4	1.4e-55	188.7	18.0	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Phage_holin_3_3	PF16083.5	gi|336255464|ref|YP_004598571.1|	-	0.15	12.2	0.1	0.15	12.2	0.1	5.0	3	1	1	4	4	4	0	LydA	holin	phage,	holin	superfamily	III
DUF302	PF03625.14	gi|336255465|ref|YP_004598572.1|	-	2.6e-17	62.4	0.0	4.4e-17	61.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
CPBP	PF02517.16	gi|336255466|ref|YP_004598573.1|	-	1.5e-06	28.5	0.4	3.3e-06	27.4	0.4	1.8	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
Virul_fac_BrkB	PF03631.15	gi|336255468|ref|YP_004598575.1|	-	0.0034	17.1	11.2	0.0083	15.8	11.3	1.6	1	1	0	1	1	1	1	Virulence	factor	BrkB
YdjM	PF04307.14	gi|336255469|ref|YP_004598576.1|	-	3.8e-11	42.6	4.2	3.8e-10	39.3	4.2	2.0	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|336255469|ref|YP_004598576.1|	-	0.14	12.2	0.4	0.32	11.0	0.4	1.5	1	1	0	1	1	1	0	Zinc	dependent	phospholipase	C
PQQ_2	PF13360.6	gi|336255470|ref|YP_004598577.1|	-	5.8e-33	114.4	15.1	5.3e-20	72.0	5.0	4.0	1	1	3	4	4	4	4	PQQ-like	domain
PQQ	PF01011.21	gi|336255470|ref|YP_004598577.1|	-	1.3e-23	81.7	9.5	0.00073	19.4	0.1	7.6	7	1	0	7	7	7	7	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|336255470|ref|YP_004598577.1|	-	3.3e-15	56.0	26.3	3.1e-05	24.3	0.1	7.9	7	1	0	7	7	7	6	PQQ-like	domain
CinA	PF02464.17	gi|336255471|ref|YP_004598578.1|	-	1e-55	187.6	1.6	1.3e-55	187.3	1.6	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
Sensor	PF13796.6	gi|336255472|ref|YP_004598579.1|	-	4.4e-33	114.6	21.4	5.3e-33	114.4	21.4	1.1	1	0	0	1	1	1	1	Putative	sensor
Aminotran_1_2	PF00155.21	gi|336255473|ref|YP_004598580.1|	-	3e-58	197.8	0.0	3.5e-58	197.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|336255473|ref|YP_004598580.1|	-	5.5e-08	32.2	0.0	1.1e-07	31.1	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|336255473|ref|YP_004598580.1|	-	7.7e-07	28.7	0.0	1.2e-06	28.1	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|336255473|ref|YP_004598580.1|	-	8.4e-06	25.3	0.0	1.4e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Alliinase_C	PF04864.13	gi|336255473|ref|YP_004598580.1|	-	5.6e-05	22.2	0.0	8.1e-05	21.7	0.0	1.2	1	0	0	1	1	1	1	Allinase
Cys_Met_Meta_PP	PF01053.20	gi|336255473|ref|YP_004598580.1|	-	0.00041	19.0	0.0	0.00051	18.7	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_MocR	PF12897.7	gi|336255473|ref|YP_004598580.1|	-	0.0023	16.8	0.4	0.049	12.4	0.2	2.4	2	1	0	2	2	2	1	Alanine-glyoxylate	amino-transferase
Aminotran_3	PF00202.21	gi|336255473|ref|YP_004598580.1|	-	0.015	14.0	0.0	0.06	12.0	0.0	1.8	2	0	0	2	2	2	0	Aminotransferase	class-III
PALP	PF00291.25	gi|336255473|ref|YP_004598580.1|	-	0.076	12.4	0.3	11	5.4	0.0	2.4	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
HRDC	PF00570.23	gi|336255473|ref|YP_004598580.1|	-	0.083	12.9	0.1	4.8	7.3	0.0	3.1	3	0	0	3	3	3	0	HRDC	domain
ArsA_ATPase	PF02374.15	gi|336255474|ref|YP_004598581.1|	-	3.9e-78	262.7	0.0	3.1e-51	174.4	0.0	2.6	2	1	0	2	2	2	2	Anion-transporting	ATPase
CbiA	PF01656.23	gi|336255474|ref|YP_004598581.1|	-	2e-07	31.1	0.0	3.7e-07	30.3	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|336255474|ref|YP_004598581.1|	-	0.0001	22.2	0.0	0.00018	21.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|336255474|ref|YP_004598581.1|	-	0.003	17.1	1.0	0.026	14.0	0.2	2.1	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|336255474|ref|YP_004598581.1|	-	0.017	14.6	0.0	0.029	13.9	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_25	PF13481.6	gi|336255474|ref|YP_004598581.1|	-	0.029	13.9	1.2	0.15	11.6	0.2	2.4	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|336255474|ref|YP_004598581.1|	-	0.11	12.0	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
Fer4_NifH	PF00142.18	gi|336255474|ref|YP_004598581.1|	-	0.13	11.7	0.0	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SRP54	PF00448.22	gi|336255474|ref|YP_004598581.1|	-	0.14	11.8	0.1	0.62	9.7	0.2	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|336255474|ref|YP_004598581.1|	-	0.15	11.3	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
Usp	PF00582.26	gi|336255475|ref|YP_004598582.1|	-	4.6e-21	75.8	4.0	5.2e-21	75.6	4.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Ribosomal_L14	PF00238.19	gi|336255475|ref|YP_004598582.1|	-	0.056	13.5	0.1	0.084	13.0	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L14p/L23e
MFS_1	PF07690.16	gi|336255476|ref|YP_004598583.1|	-	6e-38	130.7	54.7	6.9e-34	117.3	43.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Tautomerase	PF01361.21	gi|336255477|ref|YP_004598584.1|	-	5.9e-07	29.3	0.0	0.024	14.6	0.0	2.1	2	0	0	2	2	2	2	Tautomerase	enzyme
Tautomerase_2	PF14552.6	gi|336255477|ref|YP_004598584.1|	-	0.00098	19.2	0.0	0.018	15.1	0.0	2.0	1	1	1	2	2	2	1	Tautomerase	enzyme
Tautomerase_3	PF14832.6	gi|336255477|ref|YP_004598584.1|	-	0.029	14.6	0.0	0.074	13.3	0.0	1.6	1	1	0	2	2	2	0	Putative	oxalocrotonate	tautomerase	enzyme
MatE	PF01554.18	gi|336255478|ref|YP_004598585.1|	-	3.9e-58	195.7	32.2	1.5e-32	112.5	12.7	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|336255478|ref|YP_004598585.1|	-	3.6e-06	27.1	20.8	0.00013	22.0	8.6	5.2	4	3	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336255478|ref|YP_004598585.1|	-	1.6e-05	23.7	24.0	0.0045	15.7	24.0	3.3	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
DUF4191	PF13829.6	gi|336255478|ref|YP_004598585.1|	-	9.3	5.5	13.0	0.075	12.4	1.3	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4191)
Na_sulph_symp	PF00939.19	gi|336255479|ref|YP_004598586.1|	-	1.4e-87	294.7	33.5	1.8e-87	294.4	33.5	1.0	1	0	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.16	gi|336255479|ref|YP_004598586.1|	-	4e-41	141.2	33.7	4e-41	141.2	33.7	2.1	1	1	1	2	2	2	1	Citrate	transporter
NhaB	PF06450.12	gi|336255479|ref|YP_004598586.1|	-	4.8e-05	22.4	2.1	4.8e-05	22.4	2.1	1.9	2	1	0	2	2	2	1	Bacterial	Na+/H+	antiporter	B	(NhaB)
DUF5337	PF17272.2	gi|336255479|ref|YP_004598586.1|	-	0.1	12.4	0.0	0.1	12.4	0.0	3.9	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5337)
HTH_IclR	PF09339.10	gi|336255480|ref|YP_004598587.1|	-	2.7e-06	27.1	0.4	4.9e-06	26.3	0.4	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|336255480|ref|YP_004598587.1|	-	6.4e-06	26.4	0.1	8.5e-06	26.0	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
MarR	PF01047.22	gi|336255480|ref|YP_004598587.1|	-	6.6e-06	26.0	0.1	9.6e-06	25.4	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336255480|ref|YP_004598587.1|	-	1.9e-05	24.1	0.0	2.9e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336255480|ref|YP_004598587.1|	-	2.6e-05	24.0	0.3	3.3e-05	23.7	0.3	1.2	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|336255480|ref|YP_004598587.1|	-	0.00047	20.1	0.1	0.00056	19.8	0.1	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255480|ref|YP_004598587.1|	-	0.00098	19.0	0.0	0.0013	18.6	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
DUF802	PF05650.11	gi|336255480|ref|YP_004598587.1|	-	0.005	17.3	1.6	0.0084	16.5	1.6	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF802)
HTH_DeoR	PF08220.12	gi|336255480|ref|YP_004598587.1|	-	0.0053	16.5	0.2	0.011	15.5	0.1	1.6	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336255480|ref|YP_004598587.1|	-	0.0099	16.1	0.0	0.023	14.9	0.0	1.6	1	1	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|336255480|ref|YP_004598587.1|	-	0.012	15.4	0.3	0.022	14.6	0.3	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336255480|ref|YP_004598587.1|	-	0.015	15.3	0.1	0.021	14.9	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|336255480|ref|YP_004598587.1|	-	0.019	15.1	0.0	0.04	14.1	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|336255480|ref|YP_004598587.1|	-	0.051	13.2	0.0	0.076	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.6	gi|336255480|ref|YP_004598587.1|	-	0.063	13.1	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336255480|ref|YP_004598587.1|	-	0.13	12.2	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
adh_short	PF00106.25	gi|336255481|ref|YP_004598588.1|	-	9.2e-53	178.6	0.0	1.1e-52	178.3	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|336255481|ref|YP_004598588.1|	-	2.6e-44	151.5	0.0	3.8e-44	151.0	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|336255481|ref|YP_004598588.1|	-	1.1e-13	51.6	0.0	1.4e-13	51.2	0.0	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|336255481|ref|YP_004598588.1|	-	2.2e-12	47.3	0.2	3.9e-12	46.4	0.2	1.5	1	1	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|336255481|ref|YP_004598588.1|	-	4.3e-08	32.9	0.0	9.5e-08	31.8	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|336255481|ref|YP_004598588.1|	-	3.4e-06	26.4	0.1	7.3e-06	25.3	0.1	1.5	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|336255481|ref|YP_004598588.1|	-	0.00052	19.6	0.7	0.00096	18.8	0.1	1.7	2	0	0	2	2	2	1	NmrA-like	family
DUF1776	PF08643.10	gi|336255481|ref|YP_004598588.1|	-	0.001	18.5	0.0	0.0015	18.0	0.0	1.2	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
TrkA_N	PF02254.18	gi|336255481|ref|YP_004598588.1|	-	0.0042	17.3	0.3	0.01	16.1	0.1	1.7	2	0	0	2	2	2	1	TrkA-N	domain
DUF5114	PF17141.4	gi|336255481|ref|YP_004598588.1|	-	0.069	13.7	0.5	0.55	10.8	0.0	2.5	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF5114)
Eno-Rase_NADH_b	PF12242.8	gi|336255481|ref|YP_004598588.1|	-	0.074	12.8	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
2-Hacid_dh_C	PF02826.19	gi|336255481|ref|YP_004598588.1|	-	0.13	11.6	0.0	0.52	9.6	0.0	1.9	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
MatE	PF01554.18	gi|336255482|ref|YP_004598589.1|	-	9.3e-44	148.9	26.0	1.1e-24	87.0	7.5	2.6	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|336255482|ref|YP_004598589.1|	-	0.00018	21.6	7.2	0.00018	21.6	7.2	3.7	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Endonuclease_5	PF04493.14	gi|336255483|ref|YP_004598590.1|	-	4.3e-56	189.7	0.0	5.8e-56	189.3	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
DUF99	PF01949.16	gi|336255483|ref|YP_004598590.1|	-	0.04	13.3	0.2	0.3	10.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF99
Rhomboid	PF01694.22	gi|336255484|ref|YP_004598591.1|	-	1.9e-26	92.9	16.2	3e-26	92.2	16.2	1.3	1	0	0	1	1	1	1	Rhomboid	family
zf-AN1	PF01428.16	gi|336255484|ref|YP_004598591.1|	-	2e-12	47.0	8.2	2.9e-12	46.5	8.2	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.10	gi|336255484|ref|YP_004598591.1|	-	4.9e-05	23.8	0.1	0.0001	22.8	0.1	1.4	1	0	0	1	1	1	1	Eukaryotic	integral	membrane	protein	(DUF1751)
FYVE	PF01363.21	gi|336255484|ref|YP_004598591.1|	-	0.042	14.0	1.0	0.058	13.5	1.0	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-HIT	PF04438.16	gi|336255484|ref|YP_004598591.1|	-	0.23	11.4	4.3	0.32	10.9	4.3	1.2	1	0	0	1	1	1	0	HIT	zinc	finger
DNA_pol_B_thumb	PF14791.6	gi|336255486|ref|YP_004598593.1|	-	9.1e-24	83.4	0.0	2.8e-23	81.8	0.0	1.9	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.6	gi|336255486|ref|YP_004598593.1|	-	2.5e-22	79.0	5.4	2.2e-17	63.2	0.2	3.8	2	1	1	3	3	3	3	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|336255486|ref|YP_004598593.1|	-	3.6e-20	72.3	4.9	1.1e-13	51.6	0.2	3.2	2	1	2	4	4	3	3	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|336255486|ref|YP_004598593.1|	-	3.2e-08	33.0	1.3	0.0019	18.0	0.1	3.5	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
PHP	PF02811.19	gi|336255486|ref|YP_004598593.1|	-	4.2e-08	33.7	0.0	7.3e-08	32.9	0.0	1.5	1	0	0	1	1	1	1	PHP	domain
HHH_2	PF12826.7	gi|336255486|ref|YP_004598593.1|	-	7.1e-08	32.4	2.8	0.0038	17.3	0.0	3.3	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|336255486|ref|YP_004598593.1|	-	1.7e-07	31.0	0.4	6.1e-06	26.0	0.0	3.2	4	0	0	4	4	4	1	Fingers	domain	of	DNA	polymerase	lambda
DNA_pol_B_palm	PF14792.6	gi|336255486|ref|YP_004598593.1|	-	3.4e-05	24.0	0.2	9.7e-05	22.6	0.0	1.8	2	0	0	2	2	1	1	DNA	polymerase	beta	palm
HHH_3	PF12836.7	gi|336255486|ref|YP_004598593.1|	-	3.4e-05	24.0	0.1	0.16	12.3	0.0	3.6	3	1	0	3	3	3	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.8	gi|336255486|ref|YP_004598593.1|	-	0.0018	18.5	0.5	4.1	7.9	0.1	3.3	4	0	0	4	4	3	2	IMS	family	HHH	motif
Cdd1	PF11731.8	gi|336255486|ref|YP_004598593.1|	-	0.002	18.3	0.1	0.091	13.0	0.0	2.5	1	1	1	2	2	2	1	Pathogenicity	locus
5_3_exonuc	PF01367.20	gi|336255486|ref|YP_004598593.1|	-	0.015	15.8	1.0	0.33	11.6	0.1	2.9	1	1	1	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
Ribosomal_S13	PF00416.22	gi|336255486|ref|YP_004598593.1|	-	0.018	15.4	2.5	3.2	8.2	0.0	4.1	3	1	2	5	5	5	0	Ribosomal	protein	S13/S18
RNA_pol_A_CTD	PF03118.15	gi|336255486|ref|YP_004598593.1|	-	0.17	11.7	0.1	0.41	10.4	0.1	1.7	1	0	0	1	1	1	0	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
Mut7-C	PF01927.16	gi|336255487|ref|YP_004598594.1|	-	2.6e-37	128.1	0.1	2.9e-37	128.0	0.1	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|336255487|ref|YP_004598594.1|	-	0.0058	16.3	0.0	0.0096	15.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
DUF4379	PF14311.6	gi|336255487|ref|YP_004598594.1|	-	0.0089	16.4	0.9	0.015	15.7	0.9	1.4	1	0	0	1	1	1	1	Probable	Zinc-ribbon	domain
DZR	PF12773.7	gi|336255487|ref|YP_004598594.1|	-	0.012	15.6	0.2	0.028	14.5	0.2	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|336255487|ref|YP_004598594.1|	-	0.11	12.4	0.3	13	5.7	0.0	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
PHP_C	PF13263.6	gi|336255489|ref|YP_004598596.1|	-	3.1e-16	58.9	0.1	6.1e-16	57.9	0.1	1.5	1	0	0	1	1	1	1	PHP-associated
CTP-dep_RFKase	PF01982.16	gi|336255489|ref|YP_004598596.1|	-	0.21	11.7	0.0	0.36	10.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF120
zf-C2H2	PF00096.26	gi|336255490|ref|YP_004598597.1|	-	0.003	17.9	0.0	3.2	8.4	0.0	2.3	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|336255490|ref|YP_004598597.1|	-	0.1	13.5	0.1	16	6.7	0.0	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
RepB_primase	PF16793.5	gi|336255490|ref|YP_004598597.1|	-	0.12	12.5	0.0	0.14	12.3	0.0	1.1	1	0	0	1	1	1	0	RepB	DNA-primase	from	phage	plasmid
Spt5-NGN	PF03439.13	gi|336255491|ref|YP_004598598.1|	-	1.1e-23	82.9	0.1	1.8e-23	82.3	0.1	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|336255491|ref|YP_004598598.1|	-	6.6e-08	32.3	0.8	1.3e-07	31.3	0.3	1.8	2	0	0	2	2	2	1	KOW	motif
Glyco_hydro_65C	PF03633.15	gi|336255491|ref|YP_004598598.1|	-	0.097	12.6	0.2	0.19	11.7	0.2	1.5	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
DbpA	PF03880.15	gi|336255491|ref|YP_004598598.1|	-	0.13	12.2	0.1	0.31	11.1	0.1	1.6	1	0	0	1	1	1	0	DbpA	RNA	binding	domain
SecE	PF00584.20	gi|336255492|ref|YP_004598599.1|	-	5.9e-05	22.9	0.3	6.8e-05	22.7	0.3	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Bac_luciferase	PF00296.20	gi|336255494|ref|YP_004598601.1|	-	3.3e-52	177.9	1.6	4.6e-52	177.4	1.6	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Trypsin_2	PF13365.6	gi|336255495|ref|YP_004598602.1|	-	1.3e-32	113.7	1.8	2.9e-32	112.6	1.8	1.6	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|336255495|ref|YP_004598602.1|	-	1.7e-18	66.7	0.1	3.8e-18	65.6	0.1	1.6	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|336255495|ref|YP_004598602.1|	-	8.3e-15	55.2	0.2	1.4e-14	54.4	0.2	1.3	1	0	0	1	1	1	1	Trypsin
PDZ_6	PF17820.1	gi|336255495|ref|YP_004598602.1|	-	7.9e-06	25.6	2.2	7.4e-05	22.5	2.2	2.4	1	1	0	1	1	1	1	PDZ	domain
PDZ	PF00595.24	gi|336255495|ref|YP_004598602.1|	-	4.6e-05	23.7	0.1	0.00015	22.0	0.1	1.9	1	1	0	1	1	1	1	PDZ	domain
Peptidase_S46	PF10459.9	gi|336255495|ref|YP_004598602.1|	-	0.00044	19.1	0.4	0.00044	19.1	0.4	1.5	2	0	0	2	2	2	1	Peptidase	S46
Tricorn_PDZ	PF14685.6	gi|336255495|ref|YP_004598602.1|	-	0.0008	19.3	0.2	0.0052	16.7	0.1	2.3	2	0	0	2	2	2	1	Tricorn	protease	PDZ	domain
Peptidase_S7	PF00949.21	gi|336255495|ref|YP_004598602.1|	-	0.088	12.6	0.2	0.16	11.8	0.2	1.4	1	0	0	1	1	1	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
TAT_signal	PF10518.9	gi|336255495|ref|YP_004598602.1|	-	0.3	11.0	3.8	0.69	9.8	3.8	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MR_MLE_C	PF13378.6	gi|336255496|ref|YP_004598603.1|	-	8.2e-57	192.3	0.8	1.1e-56	191.8	0.8	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336255496|ref|YP_004598603.1|	-	3e-14	53.2	0.0	6.1e-14	52.2	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Amidohydro_2	PF04909.14	gi|336255496|ref|YP_004598603.1|	-	0.067	13.0	1.6	0.098	12.4	0.4	1.8	3	0	0	3	3	3	0	Amidohydrolase
Glu_dehyd_C	PF16912.5	gi|336255497|ref|YP_004598604.1|	-	5.4e-99	329.9	0.0	7.3e-99	329.5	0.0	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|336255497|ref|YP_004598604.1|	-	9.2e-11	41.6	0.0	1.5e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336255497|ref|YP_004598604.1|	-	0.00015	21.8	0.0	0.00025	21.1	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_2	PF16884.5	gi|336255497|ref|YP_004598604.1|	-	0.00021	21.1	0.1	0.00049	20.0	0.1	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
Aldolase	PF01081.19	gi|336255498|ref|YP_004598605.1|	-	1.3e-45	155.2	1.1	1.5e-45	155.0	1.1	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
DHO_dh	PF01180.21	gi|336255498|ref|YP_004598605.1|	-	0.01	15.1	5.2	0.16	11.1	0.8	2.9	1	1	2	3	3	3	0	Dihydroorotate	dehydrogenase
PALB2_WD40	PF16756.5	gi|336255498|ref|YP_004598605.1|	-	0.14	11.1	0.0	0.18	10.7	0.0	1.2	1	0	0	1	1	1	0	Partner	and	localizer	of	BRCA2	WD40	domain
IMPDH	PF00478.25	gi|336255498|ref|YP_004598605.1|	-	0.18	10.8	8.3	0.041	12.9	2.0	2.4	2	1	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Regulator_TrmB	PF11495.8	gi|336255499|ref|YP_004598606.1|	-	1.7e-56	191.0	0.1	2.3e-56	190.6	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|336255499|ref|YP_004598606.1|	-	1.2e-16	60.3	0.3	4e-16	58.7	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|336255499|ref|YP_004598606.1|	-	0.0062	16.9	0.0	0.051	13.9	0.0	2.2	2	0	0	2	2	2	1	Transcriptional	regulator
MarR_2	PF12802.7	gi|336255499|ref|YP_004598606.1|	-	0.0087	15.9	0.1	0.047	13.6	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|336255499|ref|YP_004598606.1|	-	0.013	15.4	0.5	4.5	7.3	0.1	2.6	2	1	1	3	3	3	0	HTH	domain
HTH_IclR	PF09339.10	gi|336255499|ref|YP_004598606.1|	-	0.016	15.0	0.0	1.2	9.0	0.0	2.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|336255499|ref|YP_004598606.1|	-	0.024	14.5	0.0	0.049	13.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Glyco_hydro_15	PF00723.21	gi|336255500|ref|YP_004598607.1|	-	0.0015	17.4	0.2	0.24	10.1	0.3	3.1	2	1	1	4	4	4	2	Glycosyl	hydrolases	family	15
Laminin_G_3	PF13385.6	gi|336255500|ref|YP_004598607.1|	-	0.056	13.6	1.0	0.17	12.0	0.3	2.0	1	1	1	2	2	2	0	Concanavalin	A-like	lectin/glucanases	superfamily
HisKA	PF00512.25	gi|336255500|ref|YP_004598607.1|	-	3.3	7.8	5.2	3.9	7.6	0.5	2.8	3	0	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
Alpha-amylase	PF00128.24	gi|336255501|ref|YP_004598608.1|	-	2.6e-83	280.4	0.0	4.2e-83	279.7	0.0	1.3	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Alpha-amylase_N	PF02903.14	gi|336255501|ref|YP_004598608.1|	-	3.1e-33	114.5	0.0	5.3e-33	113.7	0.0	1.4	1	0	0	1	1	1	1	Alpha	amylase,	N-terminal	ig-like	domain
DUF3459	PF11941.8	gi|336255501|ref|YP_004598608.1|	-	1.2e-06	28.8	0.5	3.5e-06	27.2	0.5	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
Malt_amylase_C	PF16657.5	gi|336255501|ref|YP_004598608.1|	-	0.11	12.6	0.0	0.27	11.4	0.0	1.7	1	0	0	1	1	1	0	Maltogenic	Amylase,	C-terminal	domain
hDGE_amylase	PF14701.6	gi|336255501|ref|YP_004598608.1|	-	0.15	11.1	0.0	0.22	10.6	0.0	1.1	1	0	0	1	1	1	0	Glycogen	debranching	enzyme,	glucanotransferase	domain
ABC_tran	PF00005.27	gi|336255502|ref|YP_004598609.1|	-	1.1e-31	110.1	0.0	1.9e-31	109.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|336255502|ref|YP_004598609.1|	-	1.7e-11	44.1	0.2	6.9e-11	42.2	0.1	2.2	2	0	0	2	2	1	1	TOBE	domain
OB_MalK	PF17912.1	gi|336255502|ref|YP_004598609.1|	-	1.2e-08	35.6	0.0	4.5e-08	33.8	0.0	2.1	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336255502|ref|YP_004598609.1|	-	2.2e-06	27.7	0.0	0.027	14.3	0.1	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|336255502|ref|YP_004598609.1|	-	4.1e-06	27.0	0.0	8.9e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	TOBE	domain
AAA_16	PF13191.6	gi|336255502|ref|YP_004598609.1|	-	0.00034	21.0	0.0	0.00053	20.4	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|336255502|ref|YP_004598609.1|	-	0.00044	19.8	0.2	0.0024	17.4	0.2	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336255502|ref|YP_004598609.1|	-	0.0022	18.3	0.2	0.004	17.4	0.2	1.5	1	1	0	1	1	1	1	AAA	domain
G-alpha	PF00503.20	gi|336255502|ref|YP_004598609.1|	-	0.0072	15.5	0.0	0.015	14.5	0.0	1.5	1	1	0	1	1	1	1	G-protein	alpha	subunit
Rad17	PF03215.15	gi|336255502|ref|YP_004598609.1|	-	0.012	15.6	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA	PF00004.29	gi|336255502|ref|YP_004598609.1|	-	0.018	15.5	0.0	0.044	14.2	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|336255502|ref|YP_004598609.1|	-	0.022	14.7	0.0	0.088	12.7	0.0	2.0	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|336255502|ref|YP_004598609.1|	-	0.027	14.5	0.0	0.072	13.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|336255502|ref|YP_004598609.1|	-	0.028	14.1	0.0	0.054	13.2	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|336255502|ref|YP_004598609.1|	-	0.045	14.1	0.0	0.46	10.9	0.0	2.6	3	0	0	3	3	3	0	RNA	helicase
AAA_18	PF13238.6	gi|336255502|ref|YP_004598609.1|	-	0.054	14.1	0.0	0.13	12.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|336255502|ref|YP_004598609.1|	-	0.066	13.4	0.3	0.18	12.0	0.2	1.8	1	1	1	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|336255502|ref|YP_004598609.1|	-	0.07	12.4	0.1	0.2	10.9	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
AAA_25	PF13481.6	gi|336255502|ref|YP_004598609.1|	-	0.071	12.7	1.7	0.59	9.7	0.3	2.9	2	1	1	3	3	3	0	AAA	domain
AAA_30	PF13604.6	gi|336255502|ref|YP_004598609.1|	-	0.071	12.8	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|336255502|ref|YP_004598609.1|	-	0.093	13.2	0.0	0.2	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255502|ref|YP_004598609.1|	-	0.1	12.5	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
SRP54	PF00448.22	gi|336255502|ref|YP_004598609.1|	-	0.17	11.5	0.2	0.86	9.2	0.0	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
SBP_bac_8	PF13416.6	gi|336255504|ref|YP_004598611.1|	-	2.4e-39	135.9	0.9	3e-39	135.6	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336255504|ref|YP_004598611.1|	-	8.5e-26	91.6	4.2	1.1e-25	91.3	4.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
ApoLp-III	PF07464.11	gi|336255504|ref|YP_004598611.1|	-	0.0017	18.5	0.2	0.043	13.9	0.0	2.2	2	0	0	2	2	2	1	Apolipophorin-III	precursor	(apoLp-III)
TAT_signal	PF10518.9	gi|336255504|ref|YP_004598611.1|	-	0.0034	17.2	0.1	0.0059	16.4	0.1	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_6	PF13343.6	gi|336255504|ref|YP_004598611.1|	-	0.013	14.9	0.1	0.066	12.6	0.1	2.1	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|336255505|ref|YP_004598612.1|	-	3.3e-14	53.0	20.2	3.3e-14	53.0	20.2	2.5	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336255506|ref|YP_004598613.1|	-	1.5e-14	54.2	11.9	1.5e-14	54.2	11.9	2.5	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
MR_MLE_C	PF13378.6	gi|336255507|ref|YP_004598614.1|	-	4.2e-57	193.2	0.9	5.7e-57	192.8	0.9	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336255507|ref|YP_004598614.1|	-	3.9e-13	49.7	0.0	7.8e-13	48.7	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
tRNA_SAD	PF07973.14	gi|336255508|ref|YP_004598615.1|	-	3.5e-10	39.8	0.2	6.7e-10	38.9	0.2	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.19	gi|336255508|ref|YP_004598615.1|	-	3.4e-08	32.5	0.0	4.6e-08	32.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
HTH_31	PF13560.6	gi|336255509|ref|YP_004598616.1|	-	0.00024	21.4	1.1	0.00048	20.4	1.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|336255509|ref|YP_004598616.1|	-	0.00027	21.0	0.1	0.0004	20.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_25	PF13413.6	gi|336255509|ref|YP_004598616.1|	-	0.003	17.4	0.4	0.0054	16.6	0.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn-ribbon_8	PF09723.10	gi|336255509|ref|YP_004598616.1|	-	0.0086	16.2	1.0	0.016	15.3	1.0	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
HTH_19	PF12844.7	gi|336255509|ref|YP_004598616.1|	-	0.015	15.3	0.0	0.027	14.5	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336255509|ref|YP_004598616.1|	-	0.03	14.3	1.5	0.077	13.0	1.5	1.6	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
DUF4685	PF15737.5	gi|336255509|ref|YP_004598616.1|	-	0.076	13.5	0.9	0.11	12.9	0.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4685)
DUF1451	PF07295.11	gi|336255509|ref|YP_004598616.1|	-	0.28	11.2	1.3	0.31	11.1	0.4	1.5	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
DUF420	PF04238.12	gi|336255510|ref|YP_004598617.1|	-	5.1e-37	127.1	5.8	5.1e-37	127.1	5.8	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.9	gi|336255510|ref|YP_004598617.1|	-	0.00015	22.0	2.3	0.00015	22.0	2.3	2.4	2	1	0	2	2	2	1	Predicted	membrane	protein	(DUF2306)
DUF3413	PF11893.8	gi|336255510|ref|YP_004598617.1|	-	0.014	14.6	6.8	0.26	10.4	2.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3413)
DUF1240	PF06836.12	gi|336255510|ref|YP_004598617.1|	-	0.066	13.7	0.8	0.066	13.7	0.8	2.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1240)
DUF5389	PF17364.2	gi|336255510|ref|YP_004598617.1|	-	0.12	12.4	2.1	0.43	10.7	0.6	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5389)
DUF3397	PF11877.8	gi|336255510|ref|YP_004598617.1|	-	0.18	12.0	13.1	0.7	10.1	1.0	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3397)
Amastin	PF07344.11	gi|336255510|ref|YP_004598617.1|	-	1.9	8.3	7.1	0.16	11.8	0.5	2.0	2	0	0	2	2	2	0	Amastin	surface	glycoprotein
Tad	PF13400.6	gi|336255511|ref|YP_004598618.1|	-	0.033	14.5	2.0	0.038	14.3	2.0	1.1	1	0	0	1	1	1	0	Putative	Flp	pilus-assembly	TadE/G-like
FixH	PF05751.11	gi|336255511|ref|YP_004598618.1|	-	0.31	11.0	1.3	0.31	11.1	1.3	1.0	1	0	0	1	1	1	0	FixH
OppC_N	PF12911.7	gi|336255511|ref|YP_004598618.1|	-	0.45	10.5	5.0	0.57	10.2	5.0	1.2	1	0	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
GATase_6	PF13522.6	gi|336255512|ref|YP_004598619.1|	-	3.4e-19	69.4	0.0	6.9e-19	68.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|336255512|ref|YP_004598619.1|	-	1e-18	67.4	0.0	2.6e-18	66.1	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|336255512|ref|YP_004598619.1|	-	8.4e-09	35.1	0.1	1.6e-08	34.2	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.6	gi|336255512|ref|YP_004598619.1|	-	0.0019	17.2	0.0	0.0039	16.1	0.0	1.5	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Na_sulph_symp	PF00939.19	gi|336255513|ref|YP_004598620.1|	-	2e-33	116.2	16.3	2.7e-33	115.8	16.3	1.0	1	0	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.16	gi|336255513|ref|YP_004598620.1|	-	1.7e-17	63.6	20.7	1.7e-17	63.6	20.7	1.8	2	0	0	2	2	2	1	Citrate	transporter
MutS_V	PF00488.21	gi|336255514|ref|YP_004598621.1|	-	1.6e-07	31.6	0.0	2.8e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
AAA_21	PF13304.6	gi|336255514|ref|YP_004598621.1|	-	0.0067	16.3	0.1	0.029	14.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_28	PF13521.6	gi|336255514|ref|YP_004598621.1|	-	0.015	15.5	1.2	0.045	14.0	0.0	2.4	2	1	1	3	3	3	0	AAA	domain
HHH_5	PF14520.6	gi|336255514|ref|YP_004598621.1|	-	0.19	12.4	1.7	2.7	8.7	0.1	3.0	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
AAA_14	PF13173.6	gi|336255514|ref|YP_004598621.1|	-	0.19	11.8	0.0	0.34	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|336255514|ref|YP_004598621.1|	-	0.28	11.6	0.0	0.52	10.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
HAD_2	PF13419.6	gi|336255516|ref|YP_004598623.1|	-	2.7e-14	53.6	0.0	3.3e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336255516|ref|YP_004598623.1|	-	5.3e-08	32.8	0.1	1.1e-07	31.8	0.1	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|336255516|ref|YP_004598623.1|	-	7.4e-07	29.7	1.4	9.1e-06	26.1	1.4	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336255516|ref|YP_004598623.1|	-	0.00019	21.9	0.3	0.00025	21.5	0.3	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
DUF3375	PF11855.8	gi|336255516|ref|YP_004598623.1|	-	0.0005	19.1	0.5	0.00068	18.7	0.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3375)
Polyketide_cyc2	PF10604.9	gi|336255517|ref|YP_004598624.1|	-	1.1e-11	45.2	0.7	1.3e-11	45.0	0.7	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|336255517|ref|YP_004598624.1|	-	1.1e-05	25.6	0.2	1.3e-05	25.4	0.2	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|336255517|ref|YP_004598624.1|	-	9.1e-05	22.7	0.0	0.0001	22.5	0.0	1.2	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
COX7C	PF02935.16	gi|336255518|ref|YP_004598625.1|	-	2.3	8.5	12.0	41	4.5	0.0	3.9	4	0	0	4	4	4	0	Cytochrome	c	oxidase	subunit	VIIc
Acetyltransf_6	PF13480.7	gi|336255519|ref|YP_004598626.1|	-	1.5e-11	44.6	2.7	1.5e-11	44.6	2.7	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FemAB	PF02388.16	gi|336255519|ref|YP_004598626.1|	-	8.5e-08	31.5	0.5	1.3e-06	27.6	0.1	2.0	2	0	0	2	2	2	1	FemAB	family
FemAB_like	PF04339.12	gi|336255519|ref|YP_004598626.1|	-	4.8e-07	29.2	0.0	0.0029	16.8	0.0	2.1	2	0	0	2	2	2	2	Peptidogalycan	biosysnthesis/recognition
ADH_zinc_N	PF00107.26	gi|336255520|ref|YP_004598627.1|	-	1.2e-26	93.2	0.3	2.1e-26	92.4	0.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|336255520|ref|YP_004598627.1|	-	4.4e-21	74.8	0.8	7.5e-21	74.1	0.1	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|336255520|ref|YP_004598627.1|	-	1e-18	68.7	0.1	1.9e-18	67.8	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NADH_4Fe-4S	PF10589.9	gi|336255520|ref|YP_004598627.1|	-	0.00081	19.4	0.1	0.002	18.1	0.1	1.7	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Epimerase	PF01370.21	gi|336255521|ref|YP_004598628.1|	-	2.3e-16	60.0	0.0	3.4e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|336255521|ref|YP_004598628.1|	-	1e-09	37.9	0.2	1.6e-09	37.3	0.2	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|336255521|ref|YP_004598628.1|	-	5e-08	32.4	0.0	1.1e-07	31.3	0.0	1.6	2	0	0	2	2	2	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|336255521|ref|YP_004598628.1|	-	7.8e-08	31.8	0.3	8.9e-05	21.8	0.3	3.0	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|336255521|ref|YP_004598628.1|	-	2.3e-07	30.1	0.0	4.6e-07	29.1	0.0	1.4	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|336255521|ref|YP_004598628.1|	-	1.2e-06	28.6	0.5	6.1e-06	26.2	0.4	2.1	1	1	1	2	2	2	1	NAD(P)H-binding
DapB_N	PF01113.20	gi|336255521|ref|YP_004598628.1|	-	0.0021	18.1	0.0	0.0042	17.2	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
GDP_Man_Dehyd	PF16363.5	gi|336255521|ref|YP_004598628.1|	-	0.0037	16.7	0.0	0.009	15.4	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
KR	PF08659.10	gi|336255521|ref|YP_004598628.1|	-	0.15	12.0	0.0	13	5.7	0.0	2.3	1	1	1	2	2	2	0	KR	domain
HemY_N	PF07219.13	gi|336255522|ref|YP_004598629.1|	-	0.0086	16.3	0.0	0.011	15.9	0.0	1.2	1	0	0	1	1	1	1	HemY	protein	N-terminus
Mit_KHE1	PF10173.9	gi|336255522|ref|YP_004598629.1|	-	3.1	7.8	4.2	4.4	7.4	4.2	1.2	1	0	0	1	1	1	0	Mitochondrial	K+-H+	exchange-related
GST_N_2	PF13409.6	gi|336255523|ref|YP_004598630.1|	-	3.1e-22	78.7	0.0	6.3e-22	77.7	0.0	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.6	gi|336255523|ref|YP_004598630.1|	-	1.3e-11	44.3	0.4	3.1e-11	43.1	0.4	1.6	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.25	gi|336255523|ref|YP_004598630.1|	-	2.4e-06	27.7	0.0	4.6e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.6	gi|336255523|ref|YP_004598630.1|	-	1.4e-05	25.4	0.0	0.29	11.6	0.0	2.6	2	0	0	2	2	2	2	Glutathione	S-transferase,	N-terminal	domain
GST_C_6	PF17171.4	gi|336255523|ref|YP_004598630.1|	-	9.6e-05	22.1	0.2	0.00018	21.2	0.2	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_3	PF14497.6	gi|336255523|ref|YP_004598630.1|	-	0.00021	21.4	0.0	0.00039	20.6	0.0	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
SANT_DAMP1_like	PF16282.5	gi|336255523|ref|YP_004598630.1|	-	0.0054	16.9	0.3	0.016	15.4	0.3	1.8	1	0	0	1	1	1	1	SANT/Myb-like	domain	of	DAMP1
Na_H_antiporter	PF03553.14	gi|336255524|ref|YP_004598631.1|	-	5.9e-30	104.5	42.0	5.1e-17	62.1	24.0	2.3	2	1	0	2	2	2	2	Na+/H+	antiporter	family
DUF1028	PF06267.12	gi|336255524|ref|YP_004598631.1|	-	0.42	10.4	3.0	0.2	11.4	0.6	1.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF1028)
TRAM	PF01938.20	gi|336255525|ref|YP_004598632.1|	-	3.2e-06	27.0	0.2	4.3e-06	26.6	0.2	1.2	1	0	0	1	1	1	1	TRAM	domain
N6_N4_Mtase	PF01555.18	gi|336255526|ref|YP_004598633.1|	-	3.1e-11	43.5	0.0	1.5e-07	31.4	0.0	2.2	2	0	0	2	2	2	2	DNA	methylase
UPF0020	PF01170.18	gi|336255526|ref|YP_004598633.1|	-	0.1	12.3	0.3	2.1	8.0	0.3	2.2	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
TrkA_N	PF02254.18	gi|336255527|ref|YP_004598634.1|	-	4.2e-26	91.5	1.2	4.6e-26	91.4	0.2	1.5	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|336255527|ref|YP_004598634.1|	-	1.3e-14	53.7	0.1	2.7e-14	52.7	0.1	1.6	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336255527|ref|YP_004598634.1|	-	8.5e-06	25.5	0.0	1.4e-05	24.7	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|336255527|ref|YP_004598634.1|	-	2.4e-05	24.7	0.0	4.9e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Sacchrp_dh_NADP	PF03435.18	gi|336255527|ref|YP_004598634.1|	-	0.00018	21.8	0.1	0.00026	21.2	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|336255527|ref|YP_004598634.1|	-	0.0016	18.4	0.0	0.0025	17.7	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|336255527|ref|YP_004598634.1|	-	0.0017	18.0	0.0	0.014	15.0	0.0	2.1	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_2	PF03446.15	gi|336255527|ref|YP_004598634.1|	-	0.0023	18.1	0.2	0.013	15.7	0.0	2.2	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|336255527|ref|YP_004598634.1|	-	0.0029	17.2	0.0	0.0049	16.5	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|336255527|ref|YP_004598634.1|	-	0.0043	16.4	0.0	0.0069	15.8	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|336255527|ref|YP_004598634.1|	-	0.025	14.0	0.1	0.036	13.5	0.1	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
AdoHcyase_NAD	PF00670.21	gi|336255527|ref|YP_004598634.1|	-	0.08	13.0	0.1	0.12	12.4	0.1	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336255527|ref|YP_004598634.1|	-	0.11	13.1	0.1	0.29	11.7	0.0	1.8	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Xan_ur_permease	PF00860.20	gi|336255528|ref|YP_004598635.1|	-	1.1e-37	129.7	45.7	1.7e-37	129.1	45.7	1.3	1	1	0	1	1	1	1	Permease	family
Doppel	PF11466.8	gi|336255528|ref|YP_004598635.1|	-	0.047	13.3	0.1	0.28	10.9	0.1	2.4	1	0	0	1	1	1	0	Prion-like	protein	Doppel
Vma12	PF11712.8	gi|336255528|ref|YP_004598635.1|	-	0.14	12.2	9.3	0.074	13.1	3.6	2.8	2	0	0	2	2	2	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
GST_N_3	PF13417.6	gi|336255529|ref|YP_004598636.1|	-	2.2e-15	56.8	0.0	2.4e-15	56.7	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|336255529|ref|YP_004598636.1|	-	1.5e-13	50.7	0.0	2e-13	50.3	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|336255529|ref|YP_004598636.1|	-	6.5e-11	42.4	0.0	7.4e-11	42.2	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|336255529|ref|YP_004598636.1|	-	0.00081	19.8	0.1	0.001	19.5	0.1	1.3	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
GST_N	PF02798.20	gi|336255529|ref|YP_004598636.1|	-	0.0048	17.2	0.0	0.0075	16.6	0.0	1.4	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Thioredoxin_2	PF13098.6	gi|336255529|ref|YP_004598636.1|	-	0.024	15.1	0.0	0.029	14.8	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
MFS_1	PF07690.16	gi|336255530|ref|YP_004598637.1|	-	2.3e-44	151.8	76.2	4.7e-33	114.6	48.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|336255530|ref|YP_004598637.1|	-	2.1e-09	36.8	9.9	2.1e-09	36.8	9.9	2.1	1	1	1	2	2	2	2	MFS_1	like	family
HTH_3	PF01381.22	gi|336255531|ref|YP_004598638.1|	-	6e-07	29.4	0.0	1.1e-06	28.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|336255531|ref|YP_004598638.1|	-	3.1e-05	24.2	0.1	0.00015	22.1	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255531|ref|YP_004598638.1|	-	0.00058	19.7	0.0	0.0014	18.5	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_19	PF12844.7	gi|336255531|ref|YP_004598638.1|	-	0.00089	19.2	0.0	0.0017	18.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|336255531|ref|YP_004598638.1|	-	0.0063	16.3	0.4	0.013	15.4	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|336255531|ref|YP_004598638.1|	-	0.03	14.1	0.0	0.075	12.9	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|336255531|ref|YP_004598638.1|	-	0.033	13.7	0.0	0.079	12.5	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_AraC	PF00165.23	gi|336255531|ref|YP_004598638.1|	-	0.05	13.7	0.0	0.1	12.7	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_8	PF02954.19	gi|336255531|ref|YP_004598638.1|	-	0.085	12.6	0.0	0.26	11.1	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_10	PF04967.12	gi|336255531|ref|YP_004598638.1|	-	0.12	12.2	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF1743	PF08489.11	gi|336255532|ref|YP_004598639.1|	-	3.6e-40	136.7	0.0	1e-39	135.2	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1743)
IBR	PF01485.21	gi|336255532|ref|YP_004598639.1|	-	0.038	14.2	0.2	0.064	13.5	0.2	1.3	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
C1_1	PF00130.22	gi|336255532|ref|YP_004598639.1|	-	0.046	13.6	0.1	0.098	12.6	0.1	1.5	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
tRNA_anti-codon	PF01336.25	gi|336255532|ref|YP_004598639.1|	-	0.047	13.7	0.0	0.22	11.5	0.0	2.1	1	1	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
HypA	PF01155.19	gi|336255532|ref|YP_004598639.1|	-	0.084	12.9	0.4	0.17	11.9	0.4	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|336255532|ref|YP_004598639.1|	-	0.092	12.7	0.9	0.2	11.6	0.9	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|336255532|ref|YP_004598639.1|	-	0.13	12.3	2.3	0.36	10.8	2.3	1.8	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_6	PF14599.6	gi|336255532|ref|YP_004598639.1|	-	0.18	11.9	0.1	0.35	10.9	0.1	1.5	1	0	0	1	1	1	0	Zinc-ribbon
zinc-ribbons_6	PF07191.12	gi|336255532|ref|YP_004598639.1|	-	0.18	11.8	0.8	0.34	10.9	0.8	1.4	1	0	0	1	1	1	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|336255532|ref|YP_004598639.1|	-	0.43	10.7	2.3	31	4.8	0.3	2.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|336255532|ref|YP_004598639.1|	-	0.67	9.9	2.2	1.3	8.9	2.2	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
MMR_HSR1_Xtn	PF16897.5	gi|336255536|ref|YP_004598643.1|	-	4.2e-31	107.1	0.7	8.6e-31	106.1	0.3	1.8	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
MMR_HSR1	PF01926.23	gi|336255536|ref|YP_004598643.1|	-	3e-23	82.1	0.0	6.9e-23	80.9	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|336255536|ref|YP_004598643.1|	-	9.5e-15	54.5	0.8	2.3e-11	43.5	0.0	2.3	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
TGS	PF02824.21	gi|336255536|ref|YP_004598643.1|	-	2.6e-13	49.8	0.0	4.5e-13	49.0	0.0	1.4	1	0	0	1	1	1	1	TGS	domain
RsgA_GTPase	PF03193.16	gi|336255536|ref|YP_004598643.1|	-	5e-07	29.8	1.7	0.029	14.3	0.0	3.1	3	2	0	3	3	3	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|336255536|ref|YP_004598643.1|	-	3.7e-05	23.9	0.2	0.083	12.9	0.1	2.8	2	0	0	2	2	2	2	Dynamin	family
ABC_tran	PF00005.27	gi|336255536|ref|YP_004598643.1|	-	0.0019	18.7	0.1	0.15	12.6	0.0	2.4	2	0	0	2	2	2	1	ABC	transporter
AIG1	PF04548.16	gi|336255536|ref|YP_004598643.1|	-	0.0022	17.3	0.1	0.0044	16.4	0.0	1.5	2	0	0	2	2	2	1	AIG1	family
GTP_EFTU	PF00009.27	gi|336255536|ref|YP_004598643.1|	-	0.0025	17.4	0.1	0.027	14.0	0.0	2.5	3	0	0	3	3	3	1	Elongation	factor	Tu	GTP	binding	domain
MeaB	PF03308.16	gi|336255536|ref|YP_004598643.1|	-	0.0057	15.7	0.2	0.71	8.8	0.0	2.8	2	1	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Arf	PF00025.21	gi|336255536|ref|YP_004598643.1|	-	0.026	14.0	0.1	1.5	8.3	0.0	2.6	1	1	1	2	2	2	0	ADP-ribosylation	factor	family
ThiS	PF02597.20	gi|336255536|ref|YP_004598643.1|	-	0.028	15.0	0.6	0.19	12.4	0.2	2.6	2	1	0	2	2	2	0	ThiS	family
Ras	PF00071.22	gi|336255536|ref|YP_004598643.1|	-	0.037	13.6	0.0	0.61	9.7	0.0	2.4	1	1	1	2	2	2	0	Ras	family
AAA_16	PF13191.6	gi|336255536|ref|YP_004598643.1|	-	0.063	13.6	0.0	0.14	12.5	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
Roc	PF08477.13	gi|336255536|ref|YP_004598643.1|	-	0.067	13.4	0.0	0.28	11.4	0.0	2.0	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRPRB	PF09439.10	gi|336255536|ref|YP_004598643.1|	-	0.1	12.0	0.5	0.18	11.3	0.0	1.7	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
ABC_tran_CTD	PF16326.5	gi|336255536|ref|YP_004598643.1|	-	0.38	11.0	8.5	0.12	12.7	3.9	2.4	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Na_H_antiporter	PF03553.14	gi|336255537|ref|YP_004598644.1|	-	2.3e-65	220.8	34.5	8e-64	215.8	25.4	3.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Peptidase_S15	PF02129.18	gi|336255537|ref|YP_004598644.1|	-	0.084	12.4	0.1	0.14	11.7	0.1	1.3	1	0	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
TNFR_16_TM	PF18422.1	gi|336255537|ref|YP_004598644.1|	-	0.15	12.0	9.4	0.25	11.3	0.5	2.9	2	0	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
COX14	PF14880.6	gi|336255537|ref|YP_004598644.1|	-	0.38	10.6	1.7	34	4.4	0.0	2.9	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
Glyoxalase	PF00903.25	gi|336255538|ref|YP_004598645.1|	-	2.5e-20	73.0	4.9	1.1e-11	45.0	0.4	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|336255538|ref|YP_004598645.1|	-	1.3e-10	41.5	1.4	0.0001	22.5	0.1	4.1	3	1	1	4	4	4	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|336255538|ref|YP_004598645.1|	-	3.4e-08	34.2	3.8	0.0019	19.0	0.9	2.2	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|336255538|ref|YP_004598645.1|	-	0.001	19.2	3.2	0.43	10.7	0.6	3.7	2	2	0	2	2	2	2	Glyoxalase-like	domain
Abhydrolase_3	PF07859.13	gi|336255539|ref|YP_004598646.1|	-	1.3e-18	67.7	1.6	2.2e-10	40.8	0.5	2.5	2	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|336255539|ref|YP_004598646.1|	-	3.9e-14	52.6	0.2	4.8e-09	36.0	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|336255539|ref|YP_004598646.1|	-	5.3e-10	38.8	0.3	0.00082	18.4	0.2	2.4	2	1	1	3	3	3	2	Carboxylesterase	family
Hydrolase_4	PF12146.8	gi|336255539|ref|YP_004598646.1|	-	6.7e-05	22.3	0.1	0.015	14.6	0.0	2.3	1	1	1	2	2	2	2	Serine	aminopeptidase,	S33
Peptidase_S15	PF02129.18	gi|336255539|ref|YP_004598646.1|	-	9.9e-05	22.1	0.3	0.021	14.4	0.1	3.1	3	0	0	3	3	3	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_6	PF12697.7	gi|336255539|ref|YP_004598646.1|	-	0.0031	18.2	6.6	0.0053	17.4	6.6	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
AXE1	PF05448.12	gi|336255539|ref|YP_004598646.1|	-	0.0059	15.3	0.1	0.29	9.8	0.0	2.2	2	0	0	2	2	2	1	Acetyl	xylan	esterase	(AXE1)
DLH	PF01738.18	gi|336255539|ref|YP_004598646.1|	-	0.0068	16.0	0.0	0.046	13.3	0.0	2.1	1	1	1	2	2	2	1	Dienelactone	hydrolase	family
Esterase_phd	PF10503.9	gi|336255539|ref|YP_004598646.1|	-	0.055	13.0	3.8	0.49	9.8	0.6	3.1	4	0	0	4	4	4	0	Esterase	PHB	depolymerase
Abhydrolase_2	PF02230.16	gi|336255539|ref|YP_004598646.1|	-	0.2	11.4	0.0	0.48	10.2	0.0	1.6	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
HTH_20	PF12840.7	gi|336255540|ref|YP_004598647.1|	-	9.9e-06	25.5	0.2	1.9e-05	24.7	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
ATPase_gene1	PF09527.10	gi|336255540|ref|YP_004598647.1|	-	0.03	14.5	2.0	0.045	13.9	2.0	1.2	1	0	0	1	1	1	0	Putative	F0F1-ATPase	subunit	Ca2+/Mg2+	transporter
SNase	PF00565.17	gi|336255541|ref|YP_004598648.1|	-	8.8e-12	45.5	0.0	1.4e-11	44.8	0.0	1.3	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
ABC_transp_aux	PF09822.9	gi|336255541|ref|YP_004598648.1|	-	1.7e-09	37.6	0.1	2.4e-05	23.9	0.1	2.2	2	0	0	2	2	2	2	ABC-type	uncharacterized	transport	system
DUF4350	PF14258.6	gi|336255541|ref|YP_004598648.1|	-	2.3e-07	31.1	2.6	0.00074	19.9	0.1	3.5	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4350)
DUF1102	PF06510.11	gi|336255541|ref|YP_004598648.1|	-	0.0013	18.9	0.1	0.0031	17.7	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1102)
DUF2194	PF09960.9	gi|336255541|ref|YP_004598648.1|	-	0.028	12.8	0.0	0.073	11.4	0.0	1.5	2	0	0	2	2	2	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
Aldo_ket_red	PF00248.21	gi|336255542|ref|YP_004598649.1|	-	8.9e-59	199.1	0.0	2.9e-56	190.8	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
SAM_adeno_trans	PF01887.16	gi|336255543|ref|YP_004598650.1|	-	0.086	12.3	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
PAP2_3	PF14378.6	gi|336255544|ref|YP_004598651.1|	-	9.3e-19	67.9	14.3	1.5e-18	67.1	14.3	1.4	1	0	0	1	1	1	1	PAP2	superfamily
PAP2	PF01569.21	gi|336255544|ref|YP_004598651.1|	-	3.5e-11	43.0	8.3	3.5e-11	43.0	8.3	1.8	1	1	1	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.6	gi|336255544|ref|YP_004598651.1|	-	0.00095	19.7	3.1	0.0031	18.0	3.1	1.8	1	0	0	1	1	1	1	PAP2	superfamily	C-terminal
DUF1772	PF08592.11	gi|336255544|ref|YP_004598651.1|	-	1.4	9.3	18.8	0.49	10.7	4.3	2.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1772)
Sulfatase	PF00884.23	gi|336255545|ref|YP_004598652.1|	-	8.8e-48	163.3	0.0	1.2e-47	162.8	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336255545|ref|YP_004598652.1|	-	7e-13	48.9	0.3	7.6e-06	25.8	0.1	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Pr_beta_C	PF12465.8	gi|336255545|ref|YP_004598652.1|	-	0.045	13.2	0.2	0.076	12.4	0.2	1.4	1	0	0	1	1	1	0	Proteasome	beta	subunits	C	terminal
DUF1501	PF07394.12	gi|336255545|ref|YP_004598652.1|	-	0.22	10.5	0.6	0.37	9.8	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1501)
LPG_synthase_TM	PF03706.13	gi|336255546|ref|YP_004598653.1|	-	1.7e-38	132.9	40.7	2e-38	132.6	40.7	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Got1	PF04178.12	gi|336255546|ref|YP_004598653.1|	-	0.22	12.0	10.1	0.044	14.2	4.2	2.5	3	0	0	3	3	3	0	Got1/Sft2-like	family
DUF2304	PF10066.9	gi|336255546|ref|YP_004598653.1|	-	3.8	7.8	11.5	1.6	8.9	7.5	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2304)
SNARE_assoc	PF09335.11	gi|336255547|ref|YP_004598654.1|	-	5.2e-12	46.3	4.0	8.2e-12	45.7	4.0	1.3	1	0	0	1	1	1	1	SNARE	associated	Golgi	protein
YdjM	PF04307.14	gi|336255548|ref|YP_004598655.1|	-	3.3e-14	52.6	10.8	1.4e-13	50.6	10.8	1.8	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF1576	PF07613.11	gi|336255548|ref|YP_004598655.1|	-	0.12	11.8	3.1	0.042	13.4	0.5	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1576)
YdjM	PF04307.14	gi|336255549|ref|YP_004598656.1|	-	2.9e-13	49.5	9.8	4.5e-13	48.9	9.8	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Arylsulfotran_2	PF14269.6	gi|336255550|ref|YP_004598657.1|	-	1.9e-10	40.6	0.7	1e-08	34.9	0.7	2.4	1	1	0	1	1	1	1	Arylsulfotransferase	(ASST)
Arylsulfotrans	PF05935.11	gi|336255550|ref|YP_004598657.1|	-	1.3e-08	34.2	1.5	5.1e-07	28.9	1.0	2.9	1	1	2	3	3	3	2	Arylsulfotransferase	(ASST)
NHL	PF01436.21	gi|336255550|ref|YP_004598657.1|	-	0.0092	16.0	2.0	8.5	6.6	0.0	3.7	3	0	0	3	3	3	2	NHL	repeat
TruB_C	PF09142.11	gi|336255550|ref|YP_004598657.1|	-	0.052	13.3	0.7	3.3	7.5	0.0	2.5	2	0	0	2	2	2	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Metalloenzyme	PF01676.18	gi|336255553|ref|YP_004598660.1|	-	0.059	12.7	0.0	0.098	12.0	0.0	1.3	1	0	0	1	1	1	0	Metalloenzyme	superfamily
PglZ	PF08665.12	gi|336255553|ref|YP_004598660.1|	-	0.14	12.2	0.0	0.29	11.2	0.0	1.5	1	0	0	1	1	1	0	PglZ	domain
Sulfatase	PF00884.23	gi|336255553|ref|YP_004598660.1|	-	0.14	11.5	0.0	0.19	11.1	0.0	1.2	1	0	0	1	1	1	0	Sulfatase
Glyco_trans_1_4	PF13692.6	gi|336255554|ref|YP_004598661.1|	-	1.1e-16	61.5	0.0	8.1e-15	55.4	0.0	2.5	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|336255554|ref|YP_004598661.1|	-	2.9e-15	56.2	0.0	3.9e-14	52.5	0.0	2.6	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336255554|ref|YP_004598661.1|	-	2.8e-13	50.2	0.0	4.3e-13	49.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336255554|ref|YP_004598661.1|	-	4.4e-07	30.5	0.1	6.7e-07	29.9	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336255554|ref|YP_004598661.1|	-	0.092	13.2	0.0	0.28	11.6	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|336255555|ref|YP_004598662.1|	-	7.4e-24	84.2	0.0	1.2e-23	83.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336255555|ref|YP_004598662.1|	-	2.2e-21	76.7	0.0	6.1e-21	75.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336255555|ref|YP_004598662.1|	-	5.6e-18	65.5	0.9	6.9e-18	65.2	0.2	1.5	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336255555|ref|YP_004598662.1|	-	6.3e-12	46.2	0.6	1.2e-11	45.3	0.1	1.8	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|336255555|ref|YP_004598662.1|	-	3.3e-08	33.6	0.0	9.2e-08	32.2	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|336255555|ref|YP_004598662.1|	-	4.2e-06	27.1	0.1	1.2e-05	25.6	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
DUF1508	PF07411.12	gi|336255556|ref|YP_004598663.1|	-	7.6e-78	256.2	10.7	3.4e-10	39.6	0.1	12.8	13	0	0	13	13	13	12	Domain	of	unknown	function	(DUF1508)
DDE_Tnp_IS240	PF13610.6	gi|336255556|ref|YP_004598663.1|	-	0.0076	16.5	7.7	21	5.3	0.0	6.5	7	0	0	7	7	7	1	DDE	domain
Trypan_PARP	PF05887.11	gi|336255556|ref|YP_004598663.1|	-	0.16	11.9	8.9	0.099	12.6	1.4	3.1	3	0	0	3	3	3	0	Procyclic	acidic	repetitive	protein	(PARP)
FtsQ	PF03799.15	gi|336255556|ref|YP_004598663.1|	-	0.21	12.4	6.8	6.2	7.7	0.0	5.5	4	3	2	7	7	7	0	Cell	division	protein	FtsQ
SPOR	PF05036.13	gi|336255556|ref|YP_004598663.1|	-	2	8.8	16.2	27	5.3	0.1	5.9	6	0	0	6	6	6	0	Sporulation	related	domain
Cdc6_C	PF09079.11	gi|336255557|ref|YP_004598664.1|	-	1.6e-17	63.2	0.1	2.8e-17	62.5	0.1	1.4	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336255557|ref|YP_004598664.1|	-	2.9e-10	40.5	0.0	7.7e-10	39.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336255557|ref|YP_004598664.1|	-	5.2e-10	40.0	1.6	5.6e-09	36.6	0.0	2.8	2	2	0	2	2	2	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|336255557|ref|YP_004598664.1|	-	0.00055	19.9	0.0	0.00097	19.1	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|336255557|ref|YP_004598664.1|	-	0.00078	18.7	0.0	0.0015	17.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.12	gi|336255557|ref|YP_004598664.1|	-	0.00081	19.3	0.0	0.0014	18.6	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|336255557|ref|YP_004598664.1|	-	0.00083	19.8	0.0	0.0042	17.5	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|336255557|ref|YP_004598664.1|	-	0.0065	16.5	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
TniB	PF05621.11	gi|336255557|ref|YP_004598664.1|	-	0.012	15.0	0.0	0.022	14.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	TniB	protein
RNA_helicase	PF00910.22	gi|336255557|ref|YP_004598664.1|	-	0.024	15.0	0.0	0.051	14.0	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
PIF1	PF05970.14	gi|336255557|ref|YP_004598664.1|	-	0.028	13.6	0.0	0.051	12.7	0.0	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_7	PF12775.7	gi|336255557|ref|YP_004598664.1|	-	0.029	13.9	0.0	0.15	11.6	0.0	2.0	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|336255557|ref|YP_004598664.1|	-	0.039	13.1	0.0	0.059	12.5	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_32	PF13654.6	gi|336255557|ref|YP_004598664.1|	-	0.041	12.7	0.3	0.78	8.4	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_lid_2	PF17863.1	gi|336255557|ref|YP_004598664.1|	-	0.055	13.3	1.2	0.11	12.3	1.2	1.6	1	0	0	1	1	1	0	AAA	lid	domain
AAA_14	PF13173.6	gi|336255557|ref|YP_004598664.1|	-	0.061	13.4	0.0	0.22	11.6	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|336255557|ref|YP_004598664.1|	-	0.062	12.2	0.0	2.2	7.1	0.0	2.2	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_24	PF13479.6	gi|336255557|ref|YP_004598664.1|	-	0.12	12.1	0.0	0.25	11.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|336255557|ref|YP_004598664.1|	-	0.13	12.8	0.0	9.6	6.7	0.0	2.5	2	0	0	2	2	2	0	ABC	transporter
MMPL	PF03176.15	gi|336255558|ref|YP_004598665.1|	-	7.5e-38	130.3	22.0	3.7e-20	72.1	3.6	2.7	3	0	0	3	3	3	2	MMPL	family
Sterol-sensing	PF12349.8	gi|336255558|ref|YP_004598665.1|	-	8.9e-14	51.6	10.7	4.5e-07	29.8	0.1	2.7	3	0	0	3	3	3	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|336255558|ref|YP_004598665.1|	-	2.5e-11	42.4	16.7	8.5e-07	27.5	4.0	2.3	2	0	0	2	2	2	2	Patched	family
UDPG_MGDP_dh_N	PF03721.14	gi|336255558|ref|YP_004598665.1|	-	0.0086	15.7	0.1	0.018	14.6	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NPCBM_assoc	PF10633.9	gi|336255559|ref|YP_004598666.1|	-	4.8e-18	65.2	14.3	0.00016	21.8	0.0	6.0	5	3	0	5	5	5	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|336255559|ref|YP_004598666.1|	-	2.8e-15	56.4	4.1	6.2e-05	23.2	0.2	4.4	4	0	0	4	4	4	3	CARDB
DUF11	PF01345.18	gi|336255559|ref|YP_004598666.1|	-	1.3e-07	31.8	10.5	0.019	15.3	1.8	4.8	4	1	0	4	4	4	2	Domain	of	unknown	function	DUF11
Fn3-like	PF14310.6	gi|336255559|ref|YP_004598666.1|	-	0.00079	19.5	5.7	1.8	8.7	0.0	5.7	7	0	0	7	7	7	2	Fibronectin	type	III-like	domain
PHTB1_C	PF14728.6	gi|336255559|ref|YP_004598666.1|	-	0.00084	18.5	0.0	0.033	13.3	0.0	2.4	3	0	0	3	3	3	1	PTHB1	C-terminus
Transglut_C	PF00927.22	gi|336255559|ref|YP_004598666.1|	-	0.0015	18.6	0.0	0.56	10.4	0.0	3.3	3	0	0	3	3	3	1	Transglutaminase	family,	C-terminal	ig	like	domain
DUF4832	PF16116.5	gi|336255559|ref|YP_004598666.1|	-	0.0017	18.3	0.6	4.7	7.0	0.0	3.8	3	1	0	3	3	3	2	Domain	of	unknown	function	(DUF4832)
FAS_meander	PF17951.1	gi|336255559|ref|YP_004598666.1|	-	0.002	18.0	0.5	0.11	12.3	0.1	3.1	3	1	1	4	4	4	1	Fatty	acid	synthase	meander	beta	sheet	domain
ASH	PF15780.5	gi|336255559|ref|YP_004598666.1|	-	0.0043	17.2	5.4	5.2	7.3	0.1	4.4	4	1	1	5	5	5	1	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
DUF4625	PF15418.6	gi|336255559|ref|YP_004598666.1|	-	0.015	15.5	0.5	0.25	11.6	0.0	3.0	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4625)
DUF1828	PF08861.10	gi|336255559|ref|YP_004598666.1|	-	0.025	14.8	0.0	0.055	13.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF1828
E1_DerP2_DerF2	PF02221.15	gi|336255559|ref|YP_004598666.1|	-	0.16	12.4	0.3	4.4	7.7	0.1	3.3	4	1	0	4	4	3	0	ML	domain
DUF916	PF06030.12	gi|336255559|ref|YP_004598666.1|	-	0.29	11.2	1.4	21	5.2	0.0	3.8	4	1	0	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF916)
DUF4232	PF14016.6	gi|336255559|ref|YP_004598666.1|	-	0.57	10.3	15.0	2	8.6	2.9	5.4	3	2	1	5	5	5	0	Protein	of	unknown	function	(DUF4232)
Pyr_redox_2	PF07992.14	gi|336255560|ref|YP_004598667.1|	-	5.1e-41	140.8	1.4	6.3e-41	140.5	1.4	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Glutaredoxin	PF00462.24	gi|336255560|ref|YP_004598667.1|	-	3.2e-18	65.7	0.0	7.3e-18	64.5	0.0	1.7	1	0	0	1	1	1	1	Glutaredoxin
Pyr_redox_3	PF13738.6	gi|336255560|ref|YP_004598667.1|	-	5.6e-17	61.9	1.4	2e-15	56.8	0.0	2.5	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336255560|ref|YP_004598667.1|	-	4.3e-15	56.0	2.5	4e-14	52.9	0.5	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336255560|ref|YP_004598667.1|	-	0.00011	21.9	4.3	0.018	14.7	0.0	2.9	2	1	1	4	4	4	2	FAD	dependent	oxidoreductase
GST_N_3	PF13417.6	gi|336255560|ref|YP_004598667.1|	-	0.00026	21.3	0.0	0.00049	20.4	0.0	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
NAD_binding_7	PF13241.6	gi|336255560|ref|YP_004598667.1|	-	0.00042	20.7	0.0	0.0079	16.6	0.0	2.5	3	0	0	3	3	2	1	Putative	NAD(P)-binding
DUF836	PF05768.14	gi|336255560|ref|YP_004598667.1|	-	0.00058	20.2	0.0	0.0017	18.8	0.0	1.8	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
HI0933_like	PF03486.14	gi|336255560|ref|YP_004598667.1|	-	0.00078	18.3	0.2	1.3	7.6	0.0	2.9	4	0	0	4	4	4	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|336255560|ref|YP_004598667.1|	-	0.0043	17.2	1.4	0.011	15.9	0.0	2.4	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|336255560|ref|YP_004598667.1|	-	0.0052	15.9	2.2	0.33	10.0	0.0	3.2	2	1	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336255560|ref|YP_004598667.1|	-	0.0064	15.9	0.1	0.035	13.4	0.0	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
SH3BGR	PF04908.15	gi|336255560|ref|YP_004598667.1|	-	0.0094	16.1	0.0	0.021	15.0	0.0	1.6	1	0	0	1	1	1	1	SH3-binding,	glutamic	acid-rich	protein
Thioredoxin_3	PF13192.6	gi|336255560|ref|YP_004598667.1|	-	0.041	13.9	0.0	0.63	10.1	0.0	2.7	2	0	0	2	2	2	0	Thioredoxin	domain
NAD_binding_9	PF13454.6	gi|336255560|ref|YP_004598667.1|	-	0.47	10.4	1.8	1.1	9.3	0.0	2.4	3	0	0	3	3	3	0	FAD-NAD(P)-binding
DUF389	PF04087.14	gi|336255561|ref|YP_004598668.1|	-	2.4e-25	89.3	21.3	2.4e-25	89.3	21.3	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
DUF357	PF04010.13	gi|336255562|ref|YP_004598669.1|	-	1.4e-32	111.5	0.3	1.7e-32	111.3	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
Cas_Cas1	PF01867.16	gi|336255562|ref|YP_004598669.1|	-	0.081	12.1	0.0	0.098	11.8	0.0	1.1	1	0	0	1	1	1	0	CRISPR	associated	protein	Cas1
FAA_hydrolase	PF01557.18	gi|336255563|ref|YP_004598670.1|	-	3.5e-67	226.3	0.0	4e-67	226.1	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|336255563|ref|YP_004598670.1|	-	0.014	16.3	0.8	0.045	14.7	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2437)
HHH_2	PF12826.7	gi|336255564|ref|YP_004598671.1|	-	0.12	12.5	0.1	0.19	11.8	0.1	1.3	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
TOBE	PF03459.17	gi|336255565|ref|YP_004598672.1|	-	1.2e-13	51.2	3.8	2.8e-13	49.9	0.3	3.1	2	2	1	3	3	3	1	TOBE	domain
HTH_1	PF00126.27	gi|336255565|ref|YP_004598672.1|	-	1.7e-07	31.1	0.2	6.8e-07	29.1	0.1	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
ABC_tran	PF00005.27	gi|336255566|ref|YP_004598673.1|	-	2.2e-33	115.7	0.0	3e-33	115.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336255566|ref|YP_004598673.1|	-	5.5e-11	42.8	0.0	7.4e-05	22.7	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|336255566|ref|YP_004598673.1|	-	4.4e-06	27.2	0.3	1.2e-05	25.8	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336255566|ref|YP_004598673.1|	-	7.7e-06	25.6	0.0	0.00044	19.9	0.0	2.3	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|336255566|ref|YP_004598673.1|	-	0.00011	21.8	0.1	0.019	14.4	0.0	2.2	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|336255566|ref|YP_004598673.1|	-	0.00039	20.3	0.0	0.00092	19.1	0.0	1.5	2	0	0	2	2	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|336255566|ref|YP_004598673.1|	-	0.00083	19.6	0.0	0.0016	18.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|336255566|ref|YP_004598673.1|	-	0.021	14.4	0.0	0.037	13.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|336255566|ref|YP_004598673.1|	-	0.031	14.4	0.0	0.08	13.0	0.0	1.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.6	gi|336255566|ref|YP_004598673.1|	-	0.035	14.7	0.0	0.074	13.6	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_28	PF13521.6	gi|336255566|ref|YP_004598673.1|	-	0.035	14.4	0.0	0.13	12.5	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|336255566|ref|YP_004598673.1|	-	0.037	14.2	0.4	0.94	9.8	0.4	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.6	gi|336255566|ref|YP_004598673.1|	-	0.062	13.5	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|336255566|ref|YP_004598673.1|	-	0.081	12.6	0.0	0.14	11.9	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336255566|ref|YP_004598673.1|	-	0.082	13.4	0.0	0.13	12.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|336255566|ref|YP_004598673.1|	-	0.15	12.0	0.0	0.26	11.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|336255566|ref|YP_004598673.1|	-	0.2	11.4	0.0	0.28	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|336255566|ref|YP_004598673.1|	-	0.2	10.8	0.0	0.39	9.8	0.0	1.4	2	0	0	2	2	2	0	NB-ARC	domain
Rad17	PF03215.15	gi|336255566|ref|YP_004598673.1|	-	0.22	11.4	0.0	0.34	10.8	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
BPD_transp_1	PF00528.22	gi|336255567|ref|YP_004598674.1|	-	8e-13	48.5	11.9	8e-13	48.5	11.9	1.4	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|336255568|ref|YP_004598675.1|	-	7.2e-31	107.9	1.3	9e-31	107.6	1.3	1.1	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.6	gi|336255568|ref|YP_004598675.1|	-	2e-07	31.0	0.1	1.6e-06	28.0	0.1	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|336255568|ref|YP_004598675.1|	-	0.00072	18.7	0.0	0.0013	17.8	0.0	1.4	1	0	0	1	1	1	1	PBP	superfamily	domain
Phosphonate-bd	PF12974.7	gi|336255568|ref|YP_004598675.1|	-	0.057	13.0	0.1	0.64	9.6	0.1	2.5	1	1	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.9	gi|336255568|ref|YP_004598675.1|	-	0.28	11.1	5.0	0.31	11.0	3.0	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PadR	PF03551.14	gi|336255569|ref|YP_004598676.1|	-	3.1e-14	52.7	0.1	3.7e-14	52.4	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|336255569|ref|YP_004598676.1|	-	0.00069	19.4	0.0	0.00088	19.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|336255569|ref|YP_004598676.1|	-	0.0013	18.6	0.0	0.0017	18.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|336255569|ref|YP_004598676.1|	-	0.0023	17.7	0.0	0.0029	17.4	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|336255569|ref|YP_004598676.1|	-	0.048	14.1	0.0	0.061	13.8	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|336255569|ref|YP_004598676.1|	-	0.056	13.6	0.0	0.069	13.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
FUR	PF01475.19	gi|336255569|ref|YP_004598676.1|	-	0.13	12.4	0.0	0.15	12.2	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
PAC2	PF09754.9	gi|336255570|ref|YP_004598677.1|	-	2.6e-42	145.3	0.0	3e-42	145.0	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
Methyltransf_11	PF08241.12	gi|336255571|ref|YP_004598678.1|	-	0.0024	18.5	0.0	0.041	14.5	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336255571|ref|YP_004598678.1|	-	0.035	14.8	0.2	0.37	11.5	0.0	2.2	1	1	1	2	2	2	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|336255572|ref|YP_004598679.1|	-	1.1e-52	178.6	0.0	1.6e-52	178.1	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|336255572|ref|YP_004598679.1|	-	3.2e-06	27.5	0.0	2.6e-05	24.6	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
FtsJ	PF01728.19	gi|336255572|ref|YP_004598679.1|	-	0.0011	19.1	0.0	0.0017	18.5	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.6	gi|336255572|ref|YP_004598679.1|	-	0.0043	16.9	0.0	0.0062	16.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltranf_PUA	PF13636.6	gi|336255573|ref|YP_004598680.1|	-	2.3e-06	27.5	1.2	4.2e-05	23.4	1.2	2.2	1	1	0	1	1	1	1	RNA-binding	PUA-like	domain	of	methyltransferase	RsmF
DrsE	PF02635.15	gi|336255574|ref|YP_004598681.1|	-	1.3e-08	35.2	0.1	1.6e-08	34.9	0.1	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.6	gi|336255574|ref|YP_004598681.1|	-	0.00062	19.7	0.2	0.001	19.0	0.1	1.3	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
Abhydrolase_6	PF12697.7	gi|336255575|ref|YP_004598682.1|	-	2.3e-11	44.7	4.1	2.8e-11	44.5	4.1	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336255575|ref|YP_004598682.1|	-	2.6e-07	30.5	0.0	0.00012	21.8	0.0	2.3	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336255575|ref|YP_004598682.1|	-	5.8e-06	25.7	0.0	0.0011	18.3	0.0	2.1	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Thioesterase	PF00975.20	gi|336255575|ref|YP_004598682.1|	-	0.0077	16.4	0.0	0.012	15.7	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	domain
Abhydrolase_4	PF08386.10	gi|336255575|ref|YP_004598682.1|	-	0.031	14.4	0.0	0.053	13.6	0.0	1.3	1	0	0	1	1	1	0	TAP-like	protein
Abhydrolase_5	PF12695.7	gi|336255575|ref|YP_004598682.1|	-	0.13	12.0	0.0	0.75	9.5	0.0	2.1	3	0	0	3	3	3	0	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|336255575|ref|YP_004598682.1|	-	0.17	11.4	0.0	9.6	5.7	0.0	2.1	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Esterase	PF00756.20	gi|336255575|ref|YP_004598682.1|	-	0.23	11.1	0.0	0.36	10.4	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
Glyoxalase	PF00903.25	gi|336255576|ref|YP_004598683.1|	-	3.6e-26	91.8	0.2	1.3e-15	57.7	0.0	2.5	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|336255576|ref|YP_004598683.1|	-	0.015	16.1	2.3	0.028	15.2	0.1	2.5	2	2	0	2	2	2	0	Glyoxalase-like	domain
DUF790	PF05626.11	gi|336255577|ref|YP_004598684.1|	-	5.5e-145	483.0	0.0	6.5e-145	482.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
DisA_N	PF02457.16	gi|336255578|ref|YP_004598685.1|	-	2.7e-07	30.2	0.0	4.8e-07	29.4	0.0	1.4	1	1	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
ResIII	PF04851.15	gi|336255579|ref|YP_004598686.1|	-	2.7e-25	89.4	0.0	6.7e-25	88.1	0.0	1.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|336255579|ref|YP_004598686.1|	-	7.6e-17	61.3	0.0	1.1e-16	60.9	0.0	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|336255579|ref|YP_004598686.1|	-	5.2e-15	55.7	0.0	2.7e-14	53.5	0.0	2.1	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|336255579|ref|YP_004598686.1|	-	8.9e-15	54.3	1.3	2.3e-14	53.0	1.3	1.8	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|336255579|ref|YP_004598686.1|	-	1.8e-06	27.8	0.0	1.7e-05	24.7	0.0	2.1	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.23	gi|336255579|ref|YP_004598686.1|	-	0.0002	20.2	0.0	0.019	13.7	0.0	2.5	2	1	0	2	2	2	2	SNF2	family	N-terminal	domain
Helicase_C_2	PF13307.6	gi|336255579|ref|YP_004598686.1|	-	0.029	14.6	0.0	9.9	6.3	0.0	2.6	3	0	0	3	3	3	0	Helicase	C-terminal	domain
AAA_22	PF13401.6	gi|336255579|ref|YP_004598686.1|	-	0.1	12.8	0.0	2.9	8.2	0.0	2.9	2	1	0	2	2	2	0	AAA	domain
Response_reg	PF00072.24	gi|336255580|ref|YP_004598687.1|	-	3.6e-19	69.0	0.0	4.5e-19	68.7	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Response_reg	PF00072.24	gi|336255581|ref|YP_004598688.1|	-	3.2e-16	59.5	0.2	3.8e-16	59.2	0.2	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GrpE	PF01025.19	gi|336255582|ref|YP_004598689.1|	-	1.2e-43	148.6	10.5	1.2e-43	148.6	10.5	2.2	1	1	1	2	2	2	1	GrpE
Atg14	PF10186.9	gi|336255582|ref|YP_004598689.1|	-	6e-06	25.6	9.6	9.2e-06	25.0	9.6	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Exonuc_VII_L	PF02601.15	gi|336255582|ref|YP_004598689.1|	-	1.7e-05	24.5	4.6	2.4e-05	24.1	4.6	1.3	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
MAD	PF05557.13	gi|336255582|ref|YP_004598689.1|	-	0.00031	19.3	20.8	0.00045	18.7	20.8	1.2	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
TMF_DNA_bd	PF12329.8	gi|336255582|ref|YP_004598689.1|	-	0.00033	20.6	10.2	0.00033	20.6	10.2	2.9	2	2	0	2	2	2	1	TATA	element	modulatory	factor	1	DNA	binding
Spc7	PF08317.11	gi|336255582|ref|YP_004598689.1|	-	0.00041	19.3	19.0	0.00041	19.3	19.0	1.8	1	1	1	2	2	2	1	Spc7	kinetochore	protein
UPF0242	PF06785.11	gi|336255582|ref|YP_004598689.1|	-	0.00084	19.5	18.5	0.00084	19.5	18.5	2.5	1	1	2	3	3	3	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
IFT57	PF10498.9	gi|336255582|ref|YP_004598689.1|	-	0.0015	17.6	4.4	0.0015	17.6	4.4	3.5	2	1	1	3	3	3	1	Intra-flagellar	transport	protein	57
DUF148	PF02520.17	gi|336255582|ref|YP_004598689.1|	-	0.0015	18.6	10.2	0.0081	16.3	3.2	2.4	1	1	0	2	2	2	1	Domain	of	unknown	function	DUF148
DUF745	PF05335.13	gi|336255582|ref|YP_004598689.1|	-	0.0023	17.7	10.5	0.0023	17.7	10.5	1.8	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF745)
DUF812	PF05667.11	gi|336255582|ref|YP_004598689.1|	-	0.0029	16.6	16.3	0.0047	15.9	16.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
Fez1	PF06818.15	gi|336255582|ref|YP_004598689.1|	-	0.003	18.0	19.7	0.0067	16.9	19.7	1.6	1	0	0	1	1	1	1	Fez1
FAM76	PF16046.5	gi|336255582|ref|YP_004598689.1|	-	0.0039	16.6	8.9	0.0074	15.7	8.9	1.4	1	0	0	1	1	1	1	FAM76	protein
Bap31_Bap29_C	PF18035.1	gi|336255582|ref|YP_004598689.1|	-	0.0075	16.3	15.6	0.024	14.6	0.0	3.8	4	0	0	4	4	3	1	Bap31/Bap29	cytoplasmic	coiled-coil	domain
MPS2	PF17060.5	gi|336255582|ref|YP_004598689.1|	-	0.0086	15.4	18.5	0.0089	15.3	13.2	2.1	1	1	1	2	2	2	1	Monopolar	spindle	protein	2
Med9	PF07544.13	gi|336255582|ref|YP_004598689.1|	-	0.0092	16.1	14.9	0.14	12.3	0.5	3.5	2	1	1	4	4	3	2	RNA	polymerase	II	transcription	mediator	complex	subunit	9
ADIP	PF11559.8	gi|336255582|ref|YP_004598689.1|	-	0.01	15.9	12.4	0.021	14.9	12.4	1.6	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
DUF948	PF06103.11	gi|336255582|ref|YP_004598689.1|	-	0.015	15.6	7.5	0.031	14.5	1.1	3.0	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF724	PF05266.14	gi|336255582|ref|YP_004598689.1|	-	0.015	15.1	8.8	0.015	15.1	8.8	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
Fib_alpha	PF08702.10	gi|336255582|ref|YP_004598689.1|	-	0.017	15.3	11.9	0.064	13.4	0.7	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
HIP1_clath_bdg	PF16515.5	gi|336255582|ref|YP_004598689.1|	-	0.018	15.7	21.9	0.19	12.3	6.6	2.6	1	1	0	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DUF3584	PF12128.8	gi|336255582|ref|YP_004598689.1|	-	0.018	12.6	23.4	0.03	11.9	23.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Utp8	PF10395.9	gi|336255582|ref|YP_004598689.1|	-	0.028	13.0	1.5	0.036	12.6	1.5	1.1	1	0	0	1	1	1	0	Utp8	family
Mce4_CUP1	PF11887.8	gi|336255582|ref|YP_004598689.1|	-	0.036	13.5	3.0	0.28	10.6	0.5	2.1	1	1	1	2	2	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
DHR10	PF18595.1	gi|336255582|ref|YP_004598689.1|	-	0.048	13.7	25.7	0.028	14.5	22.9	2.0	1	1	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
Syntaxin-6_N	PF09177.11	gi|336255582|ref|YP_004598689.1|	-	0.053	14.1	16.0	0.54	10.8	6.8	2.7	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
AAA_13	PF13166.6	gi|336255582|ref|YP_004598689.1|	-	0.057	12.1	13.7	0.088	11.4	13.7	1.2	1	0	0	1	1	1	0	AAA	domain
HOOK	PF05622.12	gi|336255582|ref|YP_004598689.1|	-	0.061	11.5	23.5	0.12	10.5	23.2	1.6	1	1	0	1	1	1	0	HOOK	protein
Prominin	PF05478.11	gi|336255582|ref|YP_004598689.1|	-	0.092	10.7	3.1	0.14	10.1	3.1	1.3	1	0	0	1	1	1	0	Prominin
DUF16	PF01519.16	gi|336255582|ref|YP_004598689.1|	-	0.094	13.2	16.8	0.054	14.0	7.7	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
CHASE6_C	PF17150.4	gi|336255582|ref|YP_004598689.1|	-	0.11	13.1	5.6	4.1	8.1	0.1	2.7	1	1	1	2	2	2	0	C-terminal	domain	of	two-partite	extracellular	sensor	domain
BST2	PF16716.5	gi|336255582|ref|YP_004598689.1|	-	0.12	13.0	13.9	0.041	14.5	6.5	2.8	1	1	2	3	3	3	0	Bone	marrow	stromal	antigen	2
CAP_N	PF01213.19	gi|336255582|ref|YP_004598689.1|	-	0.13	11.8	7.3	0.18	11.3	6.0	1.9	1	1	1	2	2	2	0	Adenylate	cyclase	associated	(CAP)	N	terminal
Laminin_II	PF06009.12	gi|336255582|ref|YP_004598689.1|	-	0.13	12.3	11.7	0.88	9.6	1.4	2.4	1	1	1	2	2	2	0	Laminin	Domain	II
DIT1_PvcA	PF05141.12	gi|336255582|ref|YP_004598689.1|	-	0.15	11.5	3.1	0.28	10.6	3.1	1.4	1	0	0	1	1	1	0	Pyoverdine/dityrosine	biosynthesis	protein
CR6_interact	PF10147.9	gi|336255582|ref|YP_004598689.1|	-	0.18	11.5	11.9	0.3	10.8	11.9	1.4	1	0	0	1	1	1	0	Growth	arrest	and	DNA-damage-inducible	proteins-interacting	protein	1
Mod_r	PF07200.13	gi|336255582|ref|YP_004598689.1|	-	0.19	11.8	16.4	0.62	10.2	16.1	2.0	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
Bacillus_HBL	PF05791.11	gi|336255582|ref|YP_004598689.1|	-	0.24	11.2	8.3	1.9	8.3	1.4	2.6	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
TMPIT	PF07851.13	gi|336255582|ref|YP_004598689.1|	-	0.34	10.1	11.9	0.042	13.1	5.4	1.9	1	1	1	2	2	2	0	TMPIT-like	protein
KASH_CCD	PF14662.6	gi|336255582|ref|YP_004598689.1|	-	0.34	10.7	20.9	0.047	13.5	15.7	1.9	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
VitD-bind_III	PF09164.10	gi|336255582|ref|YP_004598689.1|	-	0.35	10.9	0.8	0.98	9.5	0.8	1.7	1	0	0	1	1	1	0	Vitamin	D	binding	protein,	domain	III
HAUS6_N	PF14661.6	gi|336255582|ref|YP_004598689.1|	-	0.35	10.4	8.2	0.66	9.5	8.2	1.5	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Troponin	PF00992.20	gi|336255582|ref|YP_004598689.1|	-	0.43	10.9	19.3	1	9.7	19.1	1.7	1	1	0	1	1	1	0	Troponin
DivIVA	PF05103.13	gi|336255582|ref|YP_004598689.1|	-	0.51	10.4	21.1	2.6	8.1	12.9	2.6	1	1	1	2	2	2	0	DivIVA	protein
Sipho_Gp157	PF05565.11	gi|336255582|ref|YP_004598689.1|	-	0.63	10.0	18.2	0.75	9.8	1.0	2.5	1	1	1	2	2	2	0	Siphovirus	Gp157
Csm1_N	PF18504.1	gi|336255582|ref|YP_004598689.1|	-	0.68	10.3	22.2	9.9	6.6	2.0	3.8	1	1	2	3	3	3	0	Csm1	N-terminal	domain
KxDL	PF10241.9	gi|336255582|ref|YP_004598689.1|	-	0.8	10.0	9.0	5.5	7.4	5.8	2.6	1	1	3	4	4	4	0	Uncharacterized	conserved	protein
COG2	PF06148.11	gi|336255582|ref|YP_004598689.1|	-	0.8	9.8	13.9	0.13	12.4	6.3	2.6	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF5082	PF16888.5	gi|336255582|ref|YP_004598689.1|	-	0.85	9.9	16.4	2.4	8.5	0.4	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5082)
NPV_P10	PF05531.12	gi|336255582|ref|YP_004598689.1|	-	0.91	10.0	10.2	3.5	8.2	3.1	3.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Erythro_esteras	PF05139.14	gi|336255582|ref|YP_004598689.1|	-	1	9.1	16.2	0.042	13.7	10.1	1.7	2	0	0	2	2	1	0	Erythromycin	esterase
Lebercilin	PF15619.6	gi|336255582|ref|YP_004598689.1|	-	1.1	8.9	23.3	5.8	6.5	5.0	2.5	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
TMF_TATA_bd	PF12325.8	gi|336255582|ref|YP_004598689.1|	-	1.3	9.3	24.6	1	9.6	12.7	2.5	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
YabA	PF06156.13	gi|336255582|ref|YP_004598689.1|	-	1.3	9.7	11.9	12	6.6	0.5	3.2	1	1	2	3	3	3	0	Initiation	control	protein	YabA
Prefoldin_2	PF01920.20	gi|336255582|ref|YP_004598689.1|	-	1.4	8.9	21.0	6.3	6.8	0.6	3.6	1	1	1	3	3	3	0	Prefoldin	subunit
DUF1664	PF07889.12	gi|336255582|ref|YP_004598689.1|	-	1.6	8.8	12.1	0.89	9.6	5.8	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
ATG16	PF08614.11	gi|336255582|ref|YP_004598689.1|	-	1.6	8.9	34.3	0.033	14.4	26.2	2.3	2	1	1	3	3	2	0	Autophagy	protein	16	(ATG16)
Spc42p	PF11544.8	gi|336255582|ref|YP_004598689.1|	-	1.7	8.7	8.5	0.87	9.6	0.1	3.2	2	1	0	2	2	2	0	Spindle	pole	body	component	Spc42p
BLOC1_2	PF10046.9	gi|336255582|ref|YP_004598689.1|	-	1.9	8.8	10.1	0.83	10.0	5.1	2.5	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DASH_Dad2	PF08654.10	gi|336255582|ref|YP_004598689.1|	-	2.5	8.6	12.0	6.8	7.2	6.2	3.3	1	1	2	3	3	2	0	DASH	complex	subunit	Dad2
DUF3450	PF11932.8	gi|336255582|ref|YP_004598689.1|	-	2.7	7.2	21.6	0.74	9.1	6.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
FlaC_arch	PF05377.11	gi|336255582|ref|YP_004598689.1|	-	3.5	8.1	11.8	8.4	6.9	0.5	3.6	1	1	3	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
SpoVR	PF04293.13	gi|336255582|ref|YP_004598689.1|	-	3.9	6.1	7.5	5.6	5.5	7.5	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
DinB	PF05163.12	gi|336255582|ref|YP_004598689.1|	-	5.2	7.0	8.7	2.9	7.8	4.8	2.2	2	0	0	2	2	2	0	DinB	family
ING	PF12998.7	gi|336255582|ref|YP_004598689.1|	-	5.4	7.7	12.9	1	10.0	1.7	2.5	1	1	1	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
SlyX	PF04102.12	gi|336255582|ref|YP_004598689.1|	-	6.1	7.5	18.7	6.9	7.4	11.5	3.7	1	1	2	3	3	3	0	SlyX
Jnk-SapK_ap_N	PF09744.9	gi|336255582|ref|YP_004598689.1|	-	7.1	6.8	25.4	11	6.3	1.4	2.5	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
FUSC	PF04632.12	gi|336255582|ref|YP_004598689.1|	-	7.8	4.9	10.6	11	4.3	10.6	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Syntaxin_2	PF14523.6	gi|336255582|ref|YP_004598689.1|	-	8	6.9	11.8	45	4.5	10.4	2.6	1	1	1	2	2	2	0	Syntaxin-like	protein
HSP70	PF00012.20	gi|336255583|ref|YP_004598690.1|	-	2.6e-242	805.3	18.7	2.4e-240	798.8	18.7	2.0	1	1	0	1	1	1	1	Hsp70	protein
MreB_Mbl	PF06723.13	gi|336255583|ref|YP_004598690.1|	-	9.4e-20	70.7	0.3	9.4e-20	70.7	0.3	1.8	2	1	0	2	2	2	1	MreB/Mbl	protein
StbA	PF06406.11	gi|336255583|ref|YP_004598690.1|	-	0.014	14.7	0.0	0.1	11.8	0.0	2.2	2	0	0	2	2	2	0	StbA	protein
FGGY_C	PF02782.16	gi|336255583|ref|YP_004598690.1|	-	0.048	13.4	0.0	0.18	11.5	0.0	1.9	2	0	0	2	2	2	0	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
Ydc2-catalyt	PF09159.10	gi|336255583|ref|YP_004598690.1|	-	0.049	13.4	0.7	5.7	6.6	0.0	2.3	2	0	0	2	2	2	0	Mitochondrial	resolvase	Ydc2	/	RNA	splicing	MRS1
DMRL_synthase	PF00885.19	gi|336255583|ref|YP_004598690.1|	-	0.16	11.8	0.0	0.16	11.8	0.0	2.0	2	0	0	2	2	2	0	6,7-dimethyl-8-ribityllumazine	synthase
Pro_dh	PF01619.18	gi|336255583|ref|YP_004598690.1|	-	0.29	10.6	7.8	0.57	9.7	0.0	3.0	3	0	0	3	3	3	0	Proline	dehydrogenase
Fib_alpha	PF08702.10	gi|336255583|ref|YP_004598690.1|	-	0.76	10.0	8.4	2.3	8.4	8.4	1.7	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
IFT57	PF10498.9	gi|336255583|ref|YP_004598690.1|	-	1.3	7.9	12.1	0.28	10.1	8.1	1.8	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
PhyH	PF05721.13	gi|336255583|ref|YP_004598690.1|	-	2.4	8.4	4.4	3.1	8.0	2.0	2.2	2	0	0	2	2	2	0	Phytanoyl-CoA	dioxygenase	(PhyH)
TraF_2	PF13729.6	gi|336255583|ref|YP_004598690.1|	-	7	5.9	11.4	3.7	6.8	8.6	1.8	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
DnaJ_C	PF01556.18	gi|336255585|ref|YP_004598692.1|	-	2.1e-44	151.2	0.0	3e-44	150.7	0.0	1.2	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|336255585|ref|YP_004598692.1|	-	1e-25	89.6	3.4	2.2e-25	88.6	3.4	1.6	1	0	0	1	1	1	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|336255585|ref|YP_004598692.1|	-	8.6e-12	45.2	17.8	2e-11	44.1	17.8	1.7	1	0	0	1	1	1	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|336255585|ref|YP_004598692.1|	-	0.00025	20.9	12.5	0.015	15.3	4.1	2.5	2	0	0	2	2	2	2	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DUF5351	PF17302.2	gi|336255585|ref|YP_004598692.1|	-	0.056	13.6	27.0	2.2	8.5	0.6	4.7	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5351)
A2L_zn_ribbon	PF08792.10	gi|336255585|ref|YP_004598692.1|	-	0.12	12.2	6.2	1.7	8.4	0.1	3.2	2	1	1	3	3	3	0	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|336255585|ref|YP_004598692.1|	-	0.12	12.4	13.3	0.39	10.8	13.4	1.8	1	1	1	2	2	2	0	Double	zinc	ribbon
HypA	PF01155.19	gi|336255585|ref|YP_004598692.1|	-	0.27	11.3	11.0	2.9	8.0	2.5	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2318	PF10080.9	gi|336255585|ref|YP_004598692.1|	-	0.72	10.0	5.2	7.7	6.7	1.4	2.4	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
zf-ribbon_3	PF13248.6	gi|336255585|ref|YP_004598692.1|	-	4.8	6.7	9.5	0.9	9.0	3.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|336255585|ref|YP_004598692.1|	-	8.9	5.9	9.9	2.1	8.0	0.7	2.5	2	1	1	3	3	3	0	Thaumarchaeal	output	domain	1
Sensor	PF13796.6	gi|336255586|ref|YP_004598693.1|	-	9.6e-37	126.5	25.4	2.7e-35	121.8	23.3	1.5	1	1	1	2	2	2	2	Putative	sensor
DUF996	PF06195.13	gi|336255586|ref|YP_004598693.1|	-	0.87	9.9	10.3	0.12	12.7	1.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF996)
DJ-1_PfpI	PF01965.24	gi|336255587|ref|YP_004598694.1|	-	5.9e-52	175.8	0.0	7.4e-52	175.5	0.0	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
ThiJ_like	PF17124.5	gi|336255587|ref|YP_004598694.1|	-	0.0021	17.8	0.1	0.022	14.4	0.0	2.1	1	1	0	2	2	2	1	ThiJ/PfpI	family-like
GATase	PF00117.28	gi|336255587|ref|YP_004598694.1|	-	0.0022	17.8	0.0	0.0028	17.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|336255587|ref|YP_004598694.1|	-	0.0048	16.5	0.0	0.015	14.9	0.0	1.7	1	1	1	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Catalase_C	PF18011.1	gi|336255587|ref|YP_004598694.1|	-	0.015	15.0	0.0	0.021	14.4	0.0	1.2	1	0	0	1	1	1	0	C-terminal	domain	found	in	long	catalases
SnoaL_3	PF13474.6	gi|336255587|ref|YP_004598694.1|	-	0.11	12.7	0.0	0.18	12.1	0.0	1.3	1	0	0	1	1	1	0	SnoaL-like	domain
Peptidase_C26	PF07722.13	gi|336255587|ref|YP_004598694.1|	-	0.14	11.9	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	Peptidase	C26
SNO	PF01174.19	gi|336255587|ref|YP_004598694.1|	-	0.22	11.3	0.0	0.3	10.9	0.0	1.2	1	0	0	1	1	1	0	SNO	glutamine	amidotransferase	family
AMP-binding	PF00501.28	gi|336255588|ref|YP_004598695.1|	-	0.0014	17.3	0.0	0.15	10.6	0.0	2.0	2	0	0	2	2	2	2	AMP-binding	enzyme
DAO	PF01266.24	gi|336255589|ref|YP_004598696.1|	-	7.7e-44	150.7	0.5	1.1e-43	150.2	0.5	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Rieske	PF00355.26	gi|336255589|ref|YP_004598696.1|	-	5.2e-15	55.2	0.0	1.2e-14	54.0	0.0	1.5	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
FAD_binding_2	PF00890.24	gi|336255589|ref|YP_004598696.1|	-	2.4e-06	26.9	0.0	3.9e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|336255589|ref|YP_004598696.1|	-	6.7e-06	26.2	0.0	5.8e-05	23.2	0.1	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|336255589|ref|YP_004598696.1|	-	2.5e-05	23.7	0.0	4e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|336255589|ref|YP_004598696.1|	-	4.3e-05	22.9	0.0	0.00011	21.5	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336255589|ref|YP_004598696.1|	-	0.00028	20.2	0.1	0.002	17.5	0.1	2.2	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336255589|ref|YP_004598696.1|	-	0.0014	19.1	0.3	0.0043	17.6	0.3	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336255589|ref|YP_004598696.1|	-	0.0028	16.4	0.0	0.0045	15.8	0.0	1.4	1	0	0	1	1	1	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|336255589|ref|YP_004598696.1|	-	0.0052	16.2	0.0	0.0076	15.6	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|336255589|ref|YP_004598696.1|	-	0.011	14.7	0.5	0.015	14.1	0.5	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
Thi4	PF01946.17	gi|336255589|ref|YP_004598696.1|	-	0.012	14.8	0.0	0.022	14.0	0.0	1.3	1	0	0	1	1	1	0	Thi4	family
GIDA	PF01134.22	gi|336255589|ref|YP_004598696.1|	-	0.056	12.5	0.1	0.18	10.8	0.4	1.6	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Amino_oxidase	PF01593.24	gi|336255589|ref|YP_004598696.1|	-	0.12	11.7	0.5	0.25	10.6	0.2	1.7	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
Transket_pyr	PF02779.24	gi|336255590|ref|YP_004598697.1|	-	7.8e-42	142.9	0.0	1.1e-41	142.4	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|336255590|ref|YP_004598697.1|	-	8.9e-36	122.5	0.1	1.6e-35	121.7	0.1	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|336255590|ref|YP_004598697.1|	-	0.0071	16.6	0.1	0.02	15.2	0.0	1.8	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
E1_dh	PF00676.20	gi|336255591|ref|YP_004598698.1|	-	2.7e-80	269.5	0.0	3.5e-80	269.2	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|336255591|ref|YP_004598698.1|	-	7.2e-05	22.1	0.1	0.00012	21.4	0.1	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|336255591|ref|YP_004598698.1|	-	0.0089	15.8	0.8	0.032	14.0	0.8	1.9	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Transketolase_N	PF00456.21	gi|336255591|ref|YP_004598698.1|	-	0.043	12.8	0.1	0.069	12.1	0.1	1.2	1	0	0	1	1	1	0	Transketolase,	thiamine	diphosphate	binding	domain
HTH_41	PF14502.6	gi|336255591|ref|YP_004598698.1|	-	0.15	11.8	0.0	0.31	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TraF_2	PF13729.6	gi|336255592|ref|YP_004598699.1|	-	0.02	14.3	0.2	0.024	14.0	0.2	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon,	TraF,	protein
CytB6-F_Fe-S	PF08802.10	gi|336255592|ref|YP_004598699.1|	-	1.5	8.9	3.2	6.7	6.8	0.2	2.3	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
Na_H_Exchanger	PF00999.21	gi|336255593|ref|YP_004598700.1|	-	3.9e-40	137.8	23.1	4.9e-40	137.5	23.1	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Pyr_redox_2	PF07992.14	gi|336255594|ref|YP_004598701.1|	-	4.5e-20	72.1	3.4	2e-11	43.7	1.2	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336255594|ref|YP_004598701.1|	-	3.4e-15	56.1	0.1	4.8e-09	35.9	0.0	2.5	1	1	2	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336255594|ref|YP_004598701.1|	-	2e-12	47.4	0.7	6.7e-06	25.9	0.0	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|336255594|ref|YP_004598701.1|	-	5.1e-11	41.9	0.1	4.3e-05	22.4	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|336255594|ref|YP_004598701.1|	-	7.2e-09	35.3	2.0	4.1e-06	26.3	0.1	2.1	1	1	1	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|336255594|ref|YP_004598701.1|	-	7e-08	32.0	1.7	3.8e-06	26.3	0.4	2.8	1	1	2	3	3	3	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|336255594|ref|YP_004598701.1|	-	2e-07	31.1	0.0	0.0012	18.8	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|336255594|ref|YP_004598701.1|	-	5.7e-07	29.0	0.1	2.5e-05	23.5	0.0	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|336255594|ref|YP_004598701.1|	-	1.8e-05	24.3	1.1	4.3e-05	23.1	0.1	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|336255594|ref|YP_004598701.1|	-	3.1e-05	24.1	0.0	7.3e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|336255594|ref|YP_004598701.1|	-	4.2e-05	22.9	0.2	0.00014	21.2	0.0	1.8	2	1	0	2	2	2	1	Thi4	family
Pyr_redox	PF00070.27	gi|336255594|ref|YP_004598701.1|	-	0.00013	22.5	0.3	0.0074	16.8	0.3	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|336255594|ref|YP_004598701.1|	-	0.0003	20.1	0.1	0.45	9.6	0.0	2.1	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Amino_oxidase	PF01593.24	gi|336255594|ref|YP_004598701.1|	-	0.0036	16.7	0.0	0.0067	15.8	0.0	1.4	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336255594|ref|YP_004598701.1|	-	0.0038	16.3	0.0	0.0072	15.4	0.0	1.5	2	0	0	2	2	2	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|336255594|ref|YP_004598701.1|	-	0.012	14.9	0.0	0.015	14.6	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|336255594|ref|YP_004598701.1|	-	0.014	15.3	0.0	0.02	14.8	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.14	gi|336255594|ref|YP_004598701.1|	-	0.021	13.7	2.1	1.4	7.7	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Leucyl-specific	PF14795.6	gi|336255594|ref|YP_004598701.1|	-	0.048	13.7	0.3	4.5	7.4	0.1	2.4	2	0	0	2	2	2	0	Leucine-tRNA	synthetase-specific	domain
AFOR_C	PF01314.18	gi|336255596|ref|YP_004598703.1|	-	1.4e-75	254.7	0.3	2.7e-75	253.8	0.3	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|336255596|ref|YP_004598703.1|	-	1e-55	188.7	0.0	2.1e-55	187.6	0.0	1.5	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Peptidase_M48	PF01435.18	gi|336255598|ref|YP_004598705.1|	-	1.8e-24	86.6	0.8	4e-23	82.2	0.8	2.1	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|336255598|ref|YP_004598705.1|	-	0.00099	18.4	0.0	0.0017	17.7	0.0	1.3	1	0	0	1	1	1	1	BlaR1	peptidase	M56
DUF883	PF05957.13	gi|336255598|ref|YP_004598705.1|	-	0.088	13.4	0.2	0.088	13.4	0.2	2.6	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Phage_holin_3_6	PF07332.11	gi|336255598|ref|YP_004598705.1|	-	9.3	6.3	19.9	0.18	11.9	4.4	2.5	2	1	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DZR	PF12773.7	gi|336255599|ref|YP_004598706.1|	-	0.0078	16.2	9.0	0.26	11.4	9.3	2.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|336255599|ref|YP_004598706.1|	-	0.028	14.0	8.3	1.7	8.3	0.1	4.0	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
ArfGap	PF01412.18	gi|336255599|ref|YP_004598706.1|	-	0.14	12.3	2.3	0.41	10.7	2.3	1.9	1	1	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
TackOD1	PF18551.1	gi|336255599|ref|YP_004598706.1|	-	0.18	11.5	0.5	0.18	11.5	0.5	2.3	2	1	0	2	2	2	0	Thaumarchaeal	output	domain	1
Zn_Tnp_IS1595	PF12760.7	gi|336255599|ref|YP_004598706.1|	-	0.39	10.7	0.3	0.39	10.7	0.3	2.5	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
DUF3678	PF12435.8	gi|336255599|ref|YP_004598706.1|	-	0.53	9.7	4.3	2.7	7.5	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3678)
DnaJ_CXXCXGXG	PF00684.19	gi|336255599|ref|YP_004598706.1|	-	0.67	10.4	10.1	53	4.3	10.1	2.4	1	1	0	1	1	1	0	DnaJ	central	domain
zinc-ribbons_6	PF07191.12	gi|336255599|ref|YP_004598706.1|	-	0.99	9.4	8.1	2e+02	2.0	8.1	2.7	1	1	0	1	1	1	0	zinc-ribbons
Auto_anti-p27	PF06677.12	gi|336255599|ref|YP_004598706.1|	-	1.2	9.4	12.7	0.17	12.0	1.6	2.8	2	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Nudix_N_2	PF14803.6	gi|336255599|ref|YP_004598706.1|	-	1.4	8.9	16.2	7.1	6.6	0.2	4.0	2	1	1	3	3	3	0	Nudix	N-terminal
zinc_ribbon_15	PF17032.5	gi|336255599|ref|YP_004598706.1|	-	1.4	9.7	6.6	40	5.0	6.6	2.2	1	1	0	1	1	1	0	zinc-ribbon	family
HypA	PF01155.19	gi|336255599|ref|YP_004598706.1|	-	2	8.4	6.6	7.6	6.6	4.6	2.4	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|336255599|ref|YP_004598706.1|	-	5.6	6.6	13.5	0.4	10.2	3.1	2.9	2	1	0	2	2	2	0	TFIIB	zinc-binding
Acetyltransf_1	PF00583.25	gi|336255600|ref|YP_004598707.1|	-	5.8e-08	33.0	0.1	9.5e-08	32.3	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_CG	PF14542.6	gi|336255600|ref|YP_004598707.1|	-	0.00011	22.2	0.0	0.00025	21.1	0.0	1.7	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_7	PF13508.7	gi|336255600|ref|YP_004598707.1|	-	0.0015	18.9	0.0	0.0021	18.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336255600|ref|YP_004598707.1|	-	0.0016	19.1	0.0	0.0024	18.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336255600|ref|YP_004598707.1|	-	0.0064	16.4	0.0	0.011	15.7	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
MM_CoA_mutase	PF01642.22	gi|336255601|ref|YP_004598708.1|	-	1.6e-229	762.7	0.7	2e-229	762.4	0.7	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
RsbRD_N	PF14361.6	gi|336255601|ref|YP_004598708.1|	-	4.8	7.9	5.7	3.4	8.4	1.8	2.4	2	0	0	2	2	2	0	RsbT	co-antagonist	protein	rsbRD	N-terminal	domain
GSDH	PF07995.11	gi|336255602|ref|YP_004598709.1|	-	4.2e-32	111.8	0.4	2.1e-31	109.5	0.2	2.0	2	0	0	2	2	2	1	Glucose	/	Sorbosone	dehydrogenase
Copper-bind	PF00127.20	gi|336255602|ref|YP_004598709.1|	-	5.5e-09	36.4	0.6	1.3e-08	35.2	0.0	1.9	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
NHL	PF01436.21	gi|336255602|ref|YP_004598709.1|	-	0.093	12.8	0.2	7	6.9	0.0	3.5	3	0	0	3	3	3	0	NHL	repeat
Aldo_ket_red	PF00248.21	gi|336255603|ref|YP_004598710.1|	-	1e-60	205.4	0.0	1.4e-58	198.5	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Glyoxalase_4	PF13669.6	gi|336255604|ref|YP_004598711.1|	-	1.2e-17	64.2	0.1	1.4e-17	63.9	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.25	gi|336255604|ref|YP_004598711.1|	-	1.1e-12	48.2	0.3	1.2e-12	48.1	0.3	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|336255604|ref|YP_004598711.1|	-	2e-07	31.3	1.3	2.3e-07	31.1	1.3	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|336255604|ref|YP_004598711.1|	-	0.0098	16.7	0.2	0.013	16.3	0.2	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|336255604|ref|YP_004598711.1|	-	0.21	11.5	0.0	0.27	11.2	0.0	1.4	1	1	0	1	1	1	0	Glyoxalase-like	domain
FAD_binding_6	PF00970.24	gi|336255605|ref|YP_004598712.1|	-	1.3e-10	41.5	0.0	1.7e-10	41.1	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
PALP	PF00291.25	gi|336255605|ref|YP_004598712.1|	-	0.00094	18.7	0.2	0.0013	18.2	0.2	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Toprim_3	PF13362.6	gi|336255605|ref|YP_004598712.1|	-	0.0059	16.9	1.3	0.011	16.0	1.3	1.5	1	0	0	1	1	1	1	Toprim	domain
ATPgrasp_N	PF18130.1	gi|336255605|ref|YP_004598712.1|	-	0.021	15.4	1.3	0.048	14.2	1.3	1.6	1	0	0	1	1	1	0	ATP-grasp	N-terminal	domain
adh_short_C2	PF13561.6	gi|336255605|ref|YP_004598712.1|	-	0.076	12.6	0.9	0.13	11.8	0.9	1.3	1	0	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
POR_N	PF01855.19	gi|336255606|ref|YP_004598713.1|	-	4.3e-58	196.8	0.2	6.9e-58	196.1	0.2	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|336255606|ref|YP_004598713.1|	-	1.2e-40	139.5	0.1	2.3e-40	138.5	0.1	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.18	gi|336255606|ref|YP_004598713.1|	-	1.2e-06	28.2	0.1	2.4e-06	27.3	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PFOR_II	PF17147.4	gi|336255606|ref|YP_004598713.1|	-	0.044	14.1	0.0	0.1	12.9	0.0	1.7	1	0	0	1	1	1	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|336255606|ref|YP_004598713.1|	-	0.089	12.7	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.21	gi|336255607|ref|YP_004598714.1|	-	1.4e-31	109.4	0.3	2.1e-31	108.8	0.3	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|336255607|ref|YP_004598714.1|	-	1e-19	70.4	1.5	2.3e-19	69.3	1.5	1.6	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
DUF5542	PF17696.1	gi|336255608|ref|YP_004598715.1|	-	0.038	14.1	0.0	0.061	13.4	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5542)
TAT_signal	PF10518.9	gi|336255608|ref|YP_004598715.1|	-	0.051	13.4	2.0	0.094	12.6	2.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Aminotran_1_2	PF00155.21	gi|336255609|ref|YP_004598716.1|	-	1.3e-59	202.2	0.0	1.5e-59	202.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|336255609|ref|YP_004598716.1|	-	3.2e-13	49.7	0.0	6.6e-13	48.7	0.0	1.4	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|336255609|ref|YP_004598716.1|	-	4.7e-09	35.9	0.0	7.6e-09	35.3	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|336255609|ref|YP_004598716.1|	-	4.4e-07	29.2	0.0	5.9e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|336255609|ref|YP_004598716.1|	-	3.3e-06	25.9	0.0	4.2e-06	25.6	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_3	PF00202.21	gi|336255609|ref|YP_004598716.1|	-	0.063	11.9	0.1	0.12	11.0	0.1	1.3	1	0	0	1	1	1	0	Aminotransferase	class-III
ADH_zinc_N_2	PF13602.6	gi|336255610|ref|YP_004598717.1|	-	3.8e-19	70.0	0.1	7.2e-19	69.2	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|336255610|ref|YP_004598717.1|	-	5.4e-12	45.8	0.2	1e-11	44.9	0.2	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|336255610|ref|YP_004598717.1|	-	5.7e-11	42.3	0.0	4.1e-09	36.3	0.0	2.3	1	1	1	2	2	2	2	Alcohol	dehydrogenase	GroES-like	domain
ADH_N_2	PF16884.5	gi|336255610|ref|YP_004598717.1|	-	0.044	13.7	0.0	0.11	12.3	0.0	1.7	1	0	0	1	1	1	0	N-terminal	domain	of	oxidoreductase
FAD-oxidase_C	PF02913.19	gi|336255612|ref|YP_004598719.1|	-	1.1e-55	189.0	0.2	1.5e-55	188.6	0.2	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|336255612|ref|YP_004598719.1|	-	2.3e-40	137.5	0.1	3.8e-40	136.8	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Glyoxalase_6	PF18029.1	gi|336255612|ref|YP_004598719.1|	-	0.024	15.4	0.3	0.086	13.6	0.3	2.0	1	0	0	1	1	1	0	Glyoxalase-like	domain
UCR_Fe-S_N	PF10399.9	gi|336255613|ref|YP_004598720.1|	-	0.11	11.9	0.2	0.19	11.1	0.2	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TPP_enzyme_N	PF02776.18	gi|336255614|ref|YP_004598721.1|	-	3e-48	163.7	1.1	7.2e-48	162.4	0.2	2.1	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|336255614|ref|YP_004598721.1|	-	7.4e-24	84.3	0.0	4.5e-23	81.7	0.0	2.3	2	1	1	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|336255614|ref|YP_004598721.1|	-	1.8e-17	63.3	0.1	4.4e-17	62.1	0.1	1.7	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
UbiA	PF01040.18	gi|336255615|ref|YP_004598722.1|	-	1.6e-08	34.2	31.7	2.6e-08	33.5	30.4	1.9	1	1	1	2	2	2	1	UbiA	prenyltransferase	family
Acetyltransf_1	PF00583.25	gi|336255617|ref|YP_004598724.1|	-	5e-15	55.8	0.1	5.8e-15	55.5	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.7	gi|336255617|ref|YP_004598724.1|	-	3.5e-11	43.9	0.1	4e-11	43.8	0.1	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336255617|ref|YP_004598724.1|	-	3.3e-10	40.0	0.0	4.9e-10	39.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|336255617|ref|YP_004598724.1|	-	5.4e-09	36.4	0.0	7.7e-09	35.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|336255617|ref|YP_004598724.1|	-	7.8e-07	29.0	0.0	1.5e-06	28.0	0.0	1.5	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.6	gi|336255617|ref|YP_004598724.1|	-	0.00046	19.9	0.2	0.0006	19.5	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336255617|ref|YP_004598724.1|	-	0.0026	17.8	0.0	0.0046	17.1	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_4	PF13420.7	gi|336255617|ref|YP_004598724.1|	-	0.011	15.9	0.0	0.013	15.7	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|336255617|ref|YP_004598724.1|	-	0.014	15.5	0.6	0.033	14.3	0.5	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF1462	PF07315.11	gi|336255617|ref|YP_004598724.1|	-	0.036	14.3	0.1	0.28	11.5	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1462)
IMPa_N_2	PF18650.1	gi|336255617|ref|YP_004598724.1|	-	0.19	11.0	0.0	0.26	10.5	0.0	1.1	1	0	0	1	1	1	0	Immunomodulating	metalloprotease	N-terminal	domain
MMR_HSR1_C	PF08438.10	gi|336255618|ref|YP_004598725.1|	-	5.1e-30	104.3	0.0	7.9e-30	103.7	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|336255618|ref|YP_004598725.1|	-	9.1e-20	70.9	0.0	6.5e-19	68.1	0.0	2.2	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|336255618|ref|YP_004598725.1|	-	7e-13	48.4	0.0	1.6e-12	47.3	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|336255618|ref|YP_004598725.1|	-	5.3e-10	39.0	0.0	5.5e-07	29.2	0.0	3.2	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|336255618|ref|YP_004598725.1|	-	0.02	14.4	0.1	0.54	9.8	0.0	2.8	3	0	0	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
DUF463	PF04317.12	gi|336255618|ref|YP_004598725.1|	-	0.22	10.4	0.0	0.5	9.2	0.0	1.5	2	0	0	2	2	2	0	YcjX-like	family,	DUF463
DUF2267	PF10025.9	gi|336255619|ref|YP_004598726.1|	-	8.2e-34	116.5	4.2	1e-33	116.2	4.2	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Acetyltransf_1	PF00583.25	gi|336255620|ref|YP_004598727.1|	-	3.6e-15	56.2	0.2	7.1e-15	55.3	0.2	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|336255620|ref|YP_004598727.1|	-	3.2e-09	37.1	0.1	8.4e-09	35.7	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|336255620|ref|YP_004598727.1|	-	3.4e-09	37.0	0.0	4.7e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|336255620|ref|YP_004598727.1|	-	7.4e-08	32.4	0.0	1.2e-07	31.7	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|336255620|ref|YP_004598727.1|	-	1.2e-05	26.1	0.1	1.8e-05	25.4	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|336255620|ref|YP_004598727.1|	-	0.004	17.3	0.0	0.0085	16.2	0.0	1.6	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|336255620|ref|YP_004598727.1|	-	0.025	14.6	0.0	0.057	13.5	0.0	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF3267	PF11667.8	gi|336255621|ref|YP_004598728.1|	-	0.011	16.0	0.7	0.031	14.6	0.7	1.7	1	1	0	1	1	1	0	Putative	zincin	peptidase
HTH_10	PF04967.12	gi|336255622|ref|YP_004598729.1|	-	1.6e-19	69.4	0.2	2.9e-19	68.6	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|336255622|ref|YP_004598729.1|	-	0.00086	19.1	0.2	0.0039	17.1	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|336255622|ref|YP_004598729.1|	-	0.0019	18.2	0.0	0.061	13.4	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|336255622|ref|YP_004598729.1|	-	0.013	15.6	0.2	0.53	10.4	0.1	2.5	2	0	0	2	2	2	0	Sigma-70	region	3
HTH_24	PF13412.6	gi|336255622|ref|YP_004598729.1|	-	0.016	14.7	0.1	0.051	13.1	0.1	1.9	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.22	gi|336255622|ref|YP_004598729.1|	-	0.033	14.2	0.0	0.09	12.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
HTH_AsnC-type	PF13404.6	gi|336255622|ref|YP_004598729.1|	-	0.04	13.8	1.2	0.13	12.1	0.2	2.5	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|336255622|ref|YP_004598729.1|	-	0.088	12.3	0.0	0.22	11.1	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
UPF0122	PF04297.14	gi|336255622|ref|YP_004598729.1|	-	0.11	12.7	0.4	1.3	9.3	0.0	2.3	2	1	1	3	3	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_50	PF18024.1	gi|336255622|ref|YP_004598729.1|	-	0.12	12.0	0.0	0.66	9.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_CI_repr	PF07022.13	gi|336255622|ref|YP_004598729.1|	-	0.13	12.4	0.1	0.38	10.9	0.0	1.7	2	0	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255622|ref|YP_004598729.1|	-	0.14	12.1	0.4	0.83	9.7	0.1	2.5	2	1	0	2	2	2	0	HTH	domain
RecC_C	PF17946.1	gi|336255623|ref|YP_004598730.1|	-	0.097	12.4	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	RecC	C-terminal	domain
DUF1385	PF07136.11	gi|336255624|ref|YP_004598731.1|	-	0.12	11.6	0.0	0.13	11.5	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1385)
Phage_integrase	PF00589.22	gi|336255627|ref|YP_004598734.1|	-	8.9e-09	35.4	0.0	4.4e-08	33.1	0.0	2.3	3	1	0	3	3	3	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|336255627|ref|YP_004598734.1|	-	3.5e-08	33.6	0.1	8e-08	32.5	0.1	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|336255627|ref|YP_004598734.1|	-	0.00036	20.9	0.1	0.02	15.4	0.1	2.5	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|336255627|ref|YP_004598734.1|	-	0.097	13.0	0.0	0.26	11.7	0.0	1.8	1	1	0	1	1	1	0	Phage	integrase	SAM-like	domain
HTH_40	PF14493.6	gi|336255627|ref|YP_004598734.1|	-	0.17	12.4	0.0	0.47	10.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|336255628|ref|YP_004598735.1|	-	4.7e-12	45.7	0.7	1.1e-11	44.6	0.7	1.5	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|336255628|ref|YP_004598735.1|	-	0.0016	18.2	0.0	0.0022	17.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|336255628|ref|YP_004598735.1|	-	0.0047	16.9	0.0	0.0078	16.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
FUR	PF01475.19	gi|336255628|ref|YP_004598735.1|	-	0.028	14.6	0.0	0.037	14.2	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
MarR_2	PF12802.7	gi|336255628|ref|YP_004598735.1|	-	0.032	14.1	1.1	0.33	10.9	0.1	2.6	2	1	1	3	3	3	0	MarR	family
HxlR	PF01638.17	gi|336255628|ref|YP_004598735.1|	-	0.057	13.3	0.0	0.081	12.8	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_27	PF13463.6	gi|336255628|ref|YP_004598735.1|	-	0.058	13.9	0.0	0.13	12.8	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|336255628|ref|YP_004598735.1|	-	0.066	13.1	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
OST-HTH	PF12872.7	gi|336255629|ref|YP_004598736.1|	-	0.035	13.9	0.0	0.074	12.9	0.0	1.5	2	0	0	2	2	2	0	OST-HTH/LOTUS	domain
AAA_16	PF13191.6	gi|336255631|ref|YP_004598738.1|	-	4.8e-12	46.6	5.3	6.2e-11	43.0	0.0	3.2	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336255631|ref|YP_004598738.1|	-	8.7e-11	42.3	0.1	6.1e-10	39.5	0.0	2.2	1	1	2	3	3	3	1	AAA	domain
AAA	PF00004.29	gi|336255631|ref|YP_004598738.1|	-	3.4e-07	30.7	0.1	2.2e-06	28.1	0.1	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_assoc_2	PF16193.5	gi|336255631|ref|YP_004598738.1|	-	1.2e-06	28.8	0.3	4.3e-06	27.0	0.3	2.0	1	1	0	1	1	1	1	AAA	C-terminal	domain
Sigma54_activat	PF00158.26	gi|336255631|ref|YP_004598738.1|	-	3.9e-05	23.4	0.0	7.2e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|336255631|ref|YP_004598738.1|	-	5.5e-05	23.2	0.1	0.003	17.5	0.0	2.4	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|336255631|ref|YP_004598738.1|	-	9.4e-05	22.6	0.6	0.0019	18.4	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|336255631|ref|YP_004598738.1|	-	0.00011	22.1	0.1	0.00033	20.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|336255631|ref|YP_004598738.1|	-	0.00012	21.4	0.0	0.00054	19.2	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.18	gi|336255631|ref|YP_004598738.1|	-	0.00017	21.5	0.1	0.001	19.0	0.1	2.0	1	1	0	1	1	1	1	Bacterial	dnaA	protein
NACHT	PF05729.12	gi|336255631|ref|YP_004598738.1|	-	0.00038	20.4	0.0	0.00061	19.7	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
ABC_tran	PF00005.27	gi|336255631|ref|YP_004598738.1|	-	0.00055	20.5	0.0	0.0013	19.3	0.0	1.9	1	1	0	1	1	1	1	ABC	transporter
AAA_18	PF13238.6	gi|336255631|ref|YP_004598738.1|	-	0.00061	20.3	0.3	0.0033	18.0	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|336255631|ref|YP_004598738.1|	-	0.0016	18.2	0.4	0.0072	16.1	0.0	2.2	3	0	0	3	3	2	1	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|336255631|ref|YP_004598738.1|	-	0.0023	17.9	0.0	0.038	14.0	0.0	2.3	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NTPase_1	PF03266.15	gi|336255631|ref|YP_004598738.1|	-	0.0026	17.7	0.1	0.053	13.4	0.0	2.3	2	0	0	2	2	2	1	NTPase
NB-ARC	PF00931.22	gi|336255631|ref|YP_004598738.1|	-	0.0038	16.5	0.0	0.0073	15.5	0.0	1.6	2	0	0	2	2	2	1	NB-ARC	domain
AAA_7	PF12775.7	gi|336255631|ref|YP_004598738.1|	-	0.0047	16.5	0.0	0.0091	15.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
TIP49	PF06068.13	gi|336255631|ref|YP_004598738.1|	-	0.0054	16.0	0.0	0.013	14.7	0.0	1.7	1	1	0	1	1	1	1	TIP49	P-loop	domain
RNA_helicase	PF00910.22	gi|336255631|ref|YP_004598738.1|	-	0.0055	17.1	0.0	0.0097	16.3	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
AAA_24	PF13479.6	gi|336255631|ref|YP_004598738.1|	-	0.0065	16.2	0.1	0.023	14.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|336255631|ref|YP_004598738.1|	-	0.0072	16.1	0.1	0.039	13.7	0.0	2.1	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_30	PF13604.6	gi|336255631|ref|YP_004598738.1|	-	0.012	15.3	0.0	0.034	13.9	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
PEPCK_ATP	PF01293.20	gi|336255631|ref|YP_004598738.1|	-	0.022	13.4	0.0	0.034	12.8	0.0	1.2	1	0	0	1	1	1	0	Phosphoenolpyruvate	carboxykinase
Mannitol_dh	PF01232.23	gi|336255631|ref|YP_004598738.1|	-	0.025	14.7	0.0	0.052	13.7	0.0	1.5	1	0	0	1	1	1	0	Mannitol	dehydrogenase	Rossmann	domain
AAA_29	PF13555.6	gi|336255631|ref|YP_004598738.1|	-	0.032	14.0	0.1	0.063	13.0	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.6	gi|336255631|ref|YP_004598738.1|	-	0.033	14.6	1.8	0.2	12.1	0.4	2.7	2	1	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|336255631|ref|YP_004598738.1|	-	0.041	13.2	0.3	0.12	11.7	0.1	1.9	1	1	1	2	2	2	0	KaiC
AAA_19	PF13245.6	gi|336255631|ref|YP_004598738.1|	-	0.048	14.0	0.6	0.3	11.4	0.5	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|336255631|ref|YP_004598738.1|	-	0.049	14.1	0.0	0.12	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255631|ref|YP_004598738.1|	-	0.052	13.4	0.0	0.24	11.3	0.0	1.9	2	0	0	2	2	2	0	RsgA	GTPase
TniB	PF05621.11	gi|336255631|ref|YP_004598738.1|	-	0.056	12.9	0.2	0.21	11.0	0.0	2.1	2	1	0	2	2	1	0	Bacterial	TniB	protein
AAA_28	PF13521.6	gi|336255631|ref|YP_004598738.1|	-	0.064	13.5	0.0	0.14	12.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|336255631|ref|YP_004598738.1|	-	0.065	13.3	0.1	0.18	11.8	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|336255631|ref|YP_004598738.1|	-	0.066	12.9	0.0	0.15	11.6	0.0	1.6	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
HrpB1_HrpK	PF09613.10	gi|336255631|ref|YP_004598738.1|	-	0.094	12.4	0.2	0.36	10.5	0.1	2.0	2	0	0	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
Mg_chelatase	PF01078.21	gi|336255631|ref|YP_004598738.1|	-	0.095	12.1	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
PduV-EutP	PF10662.9	gi|336255631|ref|YP_004598738.1|	-	0.11	12.2	0.0	0.97	9.2	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_13	PF13166.6	gi|336255631|ref|YP_004598738.1|	-	0.18	10.4	0.0	0.28	9.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Vps36_ESCRT-II	PF11605.8	gi|336255633|ref|YP_004598740.1|	-	0.00011	22.4	0.0	0.00016	21.8	0.0	1.2	1	0	0	1	1	1	1	Vacuolar	protein	sorting	protein	36	Vps36
FixQ	PF05545.11	gi|336255633|ref|YP_004598740.1|	-	0.46	10.5	0.1	0.46	10.5	0.1	2.2	3	0	0	3	3	3	0	Cbb3-type	cytochrome	oxidase	component	FixQ
T4_Rnl2_C	PF18043.1	gi|336255639|ref|YP_004598746.1|	-	0.021	15.0	0.2	0.048	13.8	0.0	1.7	2	0	0	2	2	2	0	T4	RNA	ligase	2	C-terminal
PAP2	PF01569.21	gi|336255640|ref|YP_004598747.1|	-	4.2e-14	52.5	11.1	2.7e-12	46.6	11.1	2.2	1	1	0	1	1	1	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|336255640|ref|YP_004598747.1|	-	2.8e-07	30.4	7.6	2.8e-07	30.4	7.6	1.5	1	1	0	1	1	1	1	PAP2	superfamily
PAP2_C	PF14360.6	gi|336255640|ref|YP_004598747.1|	-	0.043	14.3	1.1	0.043	14.3	1.1	1.7	2	0	0	2	2	2	0	PAP2	superfamily	C-terminal
Sigma54_activ_2	PF14532.6	gi|336255641|ref|YP_004598748.1|	-	0.011	15.8	0.0	0.021	15.0	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
HTH_28	PF13518.6	gi|336255641|ref|YP_004598748.1|	-	0.04	14.0	0.0	0.089	12.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
N6_N4_Mtase	PF01555.18	gi|336255643|ref|YP_004598750.1|	-	6.9e-47	160.1	5.6	9.2e-45	153.1	5.6	2.4	1	1	0	1	1	1	1	DNA	methylase
Mrr_cat	PF04471.12	gi|336255643|ref|YP_004598750.1|	-	1.5e-05	25.0	0.0	4e-05	23.6	0.0	1.8	2	0	0	2	2	2	1	Restriction	endonuclease
MethyltransfD12	PF02086.15	gi|336255643|ref|YP_004598750.1|	-	0.0021	17.8	1.2	0.19	11.4	0.1	2.9	3	1	1	4	4	4	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Methyltransf_31	PF13847.6	gi|336255643|ref|YP_004598750.1|	-	0.0024	17.7	0.1	0.032	14.0	0.0	2.3	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336255643|ref|YP_004598750.1|	-	0.005	17.5	0.0	0.057	14.1	0.0	2.5	2	0	0	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|336255643|ref|YP_004598750.1|	-	0.0072	16.0	0.1	0.029	14.0	0.0	1.9	2	0	0	2	2	2	1	Conserved	hypothetical	protein	95
UPF0020	PF01170.18	gi|336255643|ref|YP_004598750.1|	-	0.047	13.4	0.0	0.089	12.5	0.0	1.4	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|336255643|ref|YP_004598750.1|	-	0.17	12.5	0.0	40	4.9	0.0	2.7	2	0	0	2	2	2	0	Methyltransferase	domain
HTH_38	PF13936.6	gi|336255646|ref|YP_004598753.1|	-	0.001	18.8	0.0	0.0022	17.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|336255646|ref|YP_004598753.1|	-	0.0029	17.8	0.1	0.031	14.5	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336255646|ref|YP_004598753.1|	-	0.0046	16.9	0.0	0.016	15.3	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|336255646|ref|YP_004598753.1|	-	0.0086	15.8	0.0	0.027	14.2	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|336255646|ref|YP_004598753.1|	-	0.05	13.4	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255646|ref|YP_004598753.1|	-	0.059	13.3	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.6	gi|336255646|ref|YP_004598753.1|	-	0.16	12.0	0.0	0.36	10.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
TackOD1	PF18551.1	gi|336255647|ref|YP_004598754.1|	-	0.022	14.4	0.2	0.028	14.1	0.2	1.0	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF488	PF04343.13	gi|336255648|ref|YP_004598755.1|	-	3.7e-07	30.8	0.7	7e-07	29.9	0.7	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF488
MethyltransfD12	PF02086.15	gi|336255649|ref|YP_004598756.1|	-	7.6e-20	71.7	0.0	1e-19	71.3	0.0	1.2	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
DUF3268	PF11672.8	gi|336255651|ref|YP_004598758.1|	-	0.0041	17.4	0.2	0.0049	17.2	0.2	1.1	1	0	0	1	1	1	1	zinc-finger-containing	domain
DZR	PF12773.7	gi|336255651|ref|YP_004598758.1|	-	0.012	15.7	0.4	0.018	15.0	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
C1_1	PF00130.22	gi|336255651|ref|YP_004598758.1|	-	0.012	15.5	0.3	0.018	14.9	0.3	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
OrfB_Zn_ribbon	PF07282.11	gi|336255651|ref|YP_004598758.1|	-	0.044	13.7	1.2	0.068	13.1	0.8	1.5	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Nudix_N_2	PF14803.6	gi|336255651|ref|YP_004598758.1|	-	0.058	13.3	3.5	0.12	12.3	3.5	1.5	1	0	0	1	1	1	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|336255651|ref|YP_004598758.1|	-	0.059	12.8	0.9	1.5	8.3	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336255651|ref|YP_004598758.1|	-	0.075	13.0	1.7	0.11	12.5	1.7	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336255651|ref|YP_004598758.1|	-	0.57	10.3	4.3	3.6	7.8	0.5	2.1	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-LITAF-like	PF10601.9	gi|336255651|ref|YP_004598758.1|	-	1.1	9.6	4.4	9.9	6.5	0.4	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
AF-4	PF05110.13	gi|336255652|ref|YP_004598759.1|	-	2.4	6.1	9.4	3	5.8	9.4	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
HalOD1	PF18545.1	gi|336255653|ref|YP_004598760.1|	-	9.5e-24	83.5	1.1	1.5e-23	82.9	1.1	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
BAT	PF15915.5	gi|336255654|ref|YP_004598761.1|	-	3.1e-21	75.9	6.2	3.1e-21	75.9	6.2	1.6	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336255654|ref|YP_004598761.1|	-	1.4e-19	69.6	0.0	2.7e-19	68.7	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|336255654|ref|YP_004598761.1|	-	1.5e-10	41.3	0.1	4.4e-10	39.8	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|336255654|ref|YP_004598761.1|	-	7.5e-09	35.6	0.0	2.2e-08	34.1	0.0	1.8	1	1	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|336255654|ref|YP_004598761.1|	-	9.2e-08	32.3	0.0	2e-07	31.2	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|336255654|ref|YP_004598761.1|	-	0.0002	21.3	0.0	0.00066	19.6	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
MarR_2	PF12802.7	gi|336255654|ref|YP_004598761.1|	-	0.0019	18.0	0.2	0.042	13.7	0.0	2.5	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336255654|ref|YP_004598761.1|	-	0.0082	15.7	0.0	0.062	12.9	0.0	2.3	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
UPF0122	PF04297.14	gi|336255654|ref|YP_004598761.1|	-	0.0096	16.1	0.0	0.02	15.1	0.0	1.5	1	0	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_20	PF12840.7	gi|336255654|ref|YP_004598761.1|	-	0.018	15.1	0.5	0.29	11.2	0.0	3.0	4	0	0	4	4	4	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336255654|ref|YP_004598761.1|	-	0.024	14.6	0.0	0.058	13.4	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|336255654|ref|YP_004598761.1|	-	0.027	14.5	0.0	0.067	13.2	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
PAS_3	PF08447.12	gi|336255654|ref|YP_004598761.1|	-	0.033	14.5	0.0	0.095	13.0	0.0	1.9	2	0	0	2	2	2	0	PAS	fold
FmdA_AmdA	PF03069.15	gi|336255655|ref|YP_004598762.1|	-	5.1e-67	226.3	0.0	8.6e-33	113.7	0.0	2.0	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
IMPDH	PF00478.25	gi|336255656|ref|YP_004598763.1|	-	2.1e-140	467.6	5.8	2.4e-140	467.5	5.8	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.28	gi|336255656|ref|YP_004598763.1|	-	2.3e-23	82.4	3.7	1.1e-10	41.8	0.3	2.9	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.15	gi|336255656|ref|YP_004598763.1|	-	2.3e-14	53.5	1.3	1.3e-07	31.4	0.3	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|336255656|ref|YP_004598763.1|	-	9.3e-10	38.0	2.8	1.6e-09	37.3	2.8	1.4	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.17	gi|336255656|ref|YP_004598763.1|	-	2e-05	23.9	5.5	7.6e-05	22.0	4.7	2.0	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
ThiG	PF05690.14	gi|336255656|ref|YP_004598763.1|	-	0.00014	21.2	1.7	0.00014	21.2	1.7	2.3	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
His_biosynth	PF00977.21	gi|336255656|ref|YP_004598763.1|	-	0.0002	20.9	2.5	0.00044	19.8	2.5	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|336255656|ref|YP_004598763.1|	-	0.00021	20.6	1.3	0.00036	19.8	1.3	1.4	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|336255656|ref|YP_004598763.1|	-	0.0024	17.0	0.1	0.0046	16.1	0.1	1.4	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
G3P_antiterm	PF04309.12	gi|336255656|ref|YP_004598763.1|	-	0.08	12.4	0.5	0.2	11.0	0.2	1.8	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
AAA_18	PF13238.6	gi|336255658|ref|YP_004598765.1|	-	1.9e-20	73.7	0.0	2.5e-20	73.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin2	PF13189.6	gi|336255658|ref|YP_004598765.1|	-	4.4e-20	72.5	0.1	5.3e-19	69.0	0.1	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_17	PF13207.6	gi|336255658|ref|YP_004598765.1|	-	2.6e-12	47.3	0.0	5.8e-12	46.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|336255658|ref|YP_004598765.1|	-	5.2e-07	29.6	0.1	0.0005	19.9	0.0	2.1	1	1	1	2	2	2	2	Cytidylate	kinase
AAA_28	PF13521.6	gi|336255658|ref|YP_004598765.1|	-	1.3e-06	28.7	0.1	3e-06	27.6	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|336255658|ref|YP_004598765.1|	-	2.1e-06	28.0	0.0	3.8e-06	27.1	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|336255658|ref|YP_004598765.1|	-	1.5e-05	25.1	0.1	6.3e-05	23.1	0.1	2.0	1	1	0	1	1	1	1	Adenylate	kinase
AAA	PF00004.29	gi|336255658|ref|YP_004598765.1|	-	9.6e-05	22.8	0.0	0.00018	21.9	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
CoaE	PF01121.20	gi|336255658|ref|YP_004598765.1|	-	0.00038	20.2	0.0	0.2	11.3	0.0	2.1	2	0	0	2	2	2	2	Dephospho-CoA	kinase
dNK	PF01712.19	gi|336255658|ref|YP_004598765.1|	-	0.0053	16.6	0.0	1.8	8.4	0.0	2.2	1	1	1	2	2	2	2	Deoxynucleoside	kinase
AAA_22	PF13401.6	gi|336255658|ref|YP_004598765.1|	-	0.019	15.2	0.1	0.034	14.4	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|336255658|ref|YP_004598765.1|	-	0.023	15.1	0.3	0.074	13.4	0.3	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
SKI	PF01202.22	gi|336255658|ref|YP_004598765.1|	-	0.023	14.8	0.1	0.28	11.3	0.1	2.1	1	1	0	1	1	1	0	Shikimate	kinase
PRK	PF00485.18	gi|336255658|ref|YP_004598765.1|	-	0.033	13.9	0.0	0.33	10.6	0.0	2.1	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_5	PF07728.14	gi|336255658|ref|YP_004598765.1|	-	0.053	13.5	0.0	0.13	12.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|336255658|ref|YP_004598765.1|	-	0.1	12.5	0.0	0.42	10.5	0.0	1.8	1	1	0	2	2	2	0	NACHT	domain
RNA_helicase	PF00910.22	gi|336255658|ref|YP_004598765.1|	-	0.15	12.5	0.0	0.23	11.9	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|336255658|ref|YP_004598765.1|	-	0.17	11.8	0.0	0.32	10.9	0.0	1.4	1	0	0	1	1	1	0	NTPase
Rad17	PF03215.15	gi|336255658|ref|YP_004598765.1|	-	0.22	11.4	0.0	0.32	10.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
Membralin	PF09746.9	gi|336255659|ref|YP_004598766.1|	-	0.03	13.4	0.0	0.034	13.2	0.0	1.1	1	0	0	1	1	1	0	Tumour-associated	protein
TAT_signal	PF10518.9	gi|336255659|ref|YP_004598766.1|	-	0.12	12.2	0.3	0.19	11.6	0.3	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
YcaO	PF02624.16	gi|336255660|ref|YP_004598767.1|	-	3.2e-51	174.5	8.2	4.5e-51	174.0	8.2	1.2	1	0	0	1	1	1	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Na_Ca_ex	PF01699.24	gi|336255661|ref|YP_004598768.1|	-	9.5e-47	158.7	31.9	1e-26	93.7	12.1	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
LysE	PF01810.18	gi|336255661|ref|YP_004598768.1|	-	0.0015	18.1	11.7	0.057	12.9	4.1	2.6	2	0	0	2	2	2	2	LysE	type	translocator
DUF4260	PF14079.6	gi|336255661|ref|YP_004598768.1|	-	0.02	14.8	2.3	0.3	11.0	0.3	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4260)
Band_7	PF01145.25	gi|336255662|ref|YP_004598769.1|	-	3.6e-37	128.1	2.2	3.6e-37	128.1	2.2	2.1	2	1	0	2	2	2	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|336255662|ref|YP_004598769.1|	-	0.017	14.9	0.1	0.032	13.9	0.1	1.5	1	0	0	1	1	1	0	SPFH	domain-Band	7	family
Na_H_Exchanger	PF00999.21	gi|336255663|ref|YP_004598770.1|	-	3.5e-59	200.5	50.4	3.9e-59	200.4	50.4	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
MatE	PF01554.18	gi|336255664|ref|YP_004598771.1|	-	6.7e-58	194.9	39.9	1.5e-34	119.0	15.3	2.6	3	1	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|336255664|ref|YP_004598771.1|	-	3.8e-08	33.5	14.5	3.8e-08	33.5	14.5	3.8	4	1	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
YniB	PF14002.6	gi|336255664|ref|YP_004598771.1|	-	0.16	11.7	0.1	0.16	11.7	0.1	1.9	2	0	0	2	2	2	0	YniB-like	protein
Pmp3	PF01679.17	gi|336255664|ref|YP_004598771.1|	-	1	9.6	0.0	1	9.6	0.0	3.8	5	0	0	5	5	5	0	Proteolipid	membrane	potential	modulator
TetR_C_6	PF13977.6	gi|336255665|ref|YP_004598772.1|	-	2.3e-20	73.0	4.6	2.3e-20	73.0	4.6	1.9	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|336255665|ref|YP_004598772.1|	-	1.8e-13	50.0	0.1	3.1e-13	49.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|336255665|ref|YP_004598772.1|	-	1.9e-07	31.4	0.8	5.1e-07	30.0	0.1	2.0	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|336255665|ref|YP_004598772.1|	-	0.00024	21.4	4.4	0.00024	21.4	4.4	2.3	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_13	PF16925.5	gi|336255665|ref|YP_004598772.1|	-	0.00045	20.1	0.0	0.0022	17.9	0.0	2.1	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|336255665|ref|YP_004598772.1|	-	0.00075	19.5	1.8	0.0025	17.8	0.9	2.4	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|336255665|ref|YP_004598772.1|	-	0.00087	19.3	0.0	0.0022	18.1	0.0	1.7	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_25	PF17933.1	gi|336255665|ref|YP_004598772.1|	-	0.00092	19.5	0.3	0.0047	17.2	0.1	2.1	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
Gluconate_2-dh3	PF13618.6	gi|336255665|ref|YP_004598772.1|	-	0.0046	17.2	1.6	0.034	14.4	0.6	2.2	1	1	1	2	2	2	1	Gluconate	2-dehydrogenase	subunit	3
TetR_C_4	PF08359.11	gi|336255665|ref|YP_004598772.1|	-	0.026	14.7	0.0	0.043	14.0	0.0	1.3	1	0	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
TetR_C_29	PF17938.1	gi|336255665|ref|YP_004598772.1|	-	0.028	14.5	0.0	0.052	13.6	0.0	1.6	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Acetyltransf_6	PF13480.7	gi|336255665|ref|YP_004598772.1|	-	1.8	8.7	8.4	0.32	11.1	0.3	2.5	2	1	0	3	3	3	0	Acetyltransferase	(GNAT)	domain
RNA_binding	PF01877.17	gi|336255666|ref|YP_004598773.1|	-	1.2e-34	119.1	0.2	1.9e-34	118.5	0.0	1.4	2	0	0	2	2	2	1	RNA	binding
Get5_C	PF18514.1	gi|336255666|ref|YP_004598773.1|	-	0.15	11.8	1.0	13	5.6	0.1	2.3	2	0	0	2	2	2	0	Get5	C-terminal	domain
DUF1918	PF08940.11	gi|336255667|ref|YP_004598774.1|	-	0.05	13.2	0.1	0.063	12.9	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1918)
LBR_tudor	PF09465.10	gi|336255667|ref|YP_004598774.1|	-	0.11	12.3	0.1	0.21	11.4	0.0	1.6	2	0	0	2	2	2	0	Lamin-B	receptor	of	TUDOR	domain
Tudor_3	PF18115.1	gi|336255667|ref|YP_004598774.1|	-	0.18	11.7	0.0	0.26	11.2	0.0	1.4	1	1	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
NTP_transf_2	PF01909.23	gi|336255668|ref|YP_004598775.1|	-	3e-10	40.2	0.1	4.9e-10	39.6	0.1	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|336255668|ref|YP_004598775.1|	-	1.3e-07	31.6	0.0	2.3e-07	30.8	0.0	1.4	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|336255668|ref|YP_004598775.1|	-	0.042	14.1	0.0	0.066	13.4	0.0	1.3	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
MarR_2	PF12802.7	gi|336255668|ref|YP_004598775.1|	-	0.045	13.7	0.1	8.9	6.3	0.0	2.4	2	0	0	2	2	2	0	MarR	family
DUF294	PF03445.13	gi|336255668|ref|YP_004598775.1|	-	0.067	13.0	0.1	0.21	11.4	0.1	1.8	1	1	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
CTP_transf_like	PF01467.26	gi|336255670|ref|YP_004598777.1|	-	8.7e-14	51.9	0.0	1.1e-13	51.6	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|336255670|ref|YP_004598777.1|	-	0.0012	18.8	0.2	0.029	14.3	0.2	2.2	2	0	0	2	2	2	1	FAD	synthetase
PTA_PTB	PF01515.19	gi|336255671|ref|YP_004598778.1|	-	4.1e-94	315.5	0.0	5.5e-94	315.0	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
malic	PF00390.19	gi|336255671|ref|YP_004598778.1|	-	3e-30	105.4	0.1	6.8e-28	97.7	0.1	2.4	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|336255671|ref|YP_004598778.1|	-	1e-21	77.4	0.1	2.7e-21	76.0	0.1	1.7	1	1	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
HTH_31	PF13560.6	gi|336255671|ref|YP_004598778.1|	-	0.046	14.1	0.0	0.12	12.7	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
PQQ_3	PF13570.6	gi|336255672|ref|YP_004598779.1|	-	5.8e-36	122.1	27.3	2.1e-08	34.4	0.3	9.0	8	1	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|336255672|ref|YP_004598779.1|	-	2e-35	119.0	18.2	1e-08	34.7	0.3	8.1	8	1	0	8	8	8	5	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|336255672|ref|YP_004598779.1|	-	9.3e-32	110.5	4.7	1.4e-13	51.0	0.5	3.4	1	1	1	3	3	3	3	PQQ-like	domain
Ribosomal_S8e	PF01201.22	gi|336255673|ref|YP_004598780.1|	-	6.5e-32	110.6	3.2	7.5e-32	110.4	3.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
PhoU	PF01895.19	gi|336255674|ref|YP_004598781.1|	-	9.4e-20	70.9	6.9	1.9e-15	57.1	1.0	2.5	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|336255674|ref|YP_004598781.1|	-	1.2e-11	44.2	0.1	6e-11	42.0	0.0	2.3	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
NIR_SIR_ferr	PF03460.17	gi|336255674|ref|YP_004598781.1|	-	0.063	13.1	0.3	0.25	11.2	0.1	2.1	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
PBP_like_2	PF12849.7	gi|336255675|ref|YP_004598782.1|	-	1.1e-29	104.0	0.4	1.8e-29	103.3	0.4	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|336255675|ref|YP_004598782.1|	-	1.5e-12	47.0	0.0	2.9e-12	46.1	0.0	1.5	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.9	gi|336255675|ref|YP_004598782.1|	-	0.012	15.4	0.8	0.022	14.6	0.8	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336255675|ref|YP_004598782.1|	-	0.18	11.2	0.3	0.33	10.3	0.3	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_1	PF00528.22	gi|336255676|ref|YP_004598783.1|	-	5.6e-17	62.1	13.6	5.6e-17	62.1	13.6	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336255677|ref|YP_004598784.1|	-	3.5e-17	62.7	16.3	3.5e-17	62.7	16.3	4.6	1	1	2	5	5	5	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336255678|ref|YP_004598785.1|	-	3.1e-29	102.2	0.0	5.4e-29	101.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336255678|ref|YP_004598785.1|	-	5.2e-12	46.2	0.0	7.9e-05	22.6	0.0	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336255678|ref|YP_004598785.1|	-	2.6e-09	36.8	0.1	8.1e-05	22.2	0.0	2.2	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|336255678|ref|YP_004598785.1|	-	2.3e-06	27.6	0.0	0.00051	19.9	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336255678|ref|YP_004598785.1|	-	7.9e-05	22.9	0.0	0.00019	21.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|336255678|ref|YP_004598785.1|	-	0.00027	21.5	0.0	0.00055	20.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336255678|ref|YP_004598785.1|	-	0.0011	18.7	0.0	0.0024	17.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|336255678|ref|YP_004598785.1|	-	0.0013	18.6	0.0	0.0028	17.6	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
Rad17	PF03215.15	gi|336255678|ref|YP_004598785.1|	-	0.0084	16.1	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|336255678|ref|YP_004598785.1|	-	0.0087	16.5	0.0	0.036	14.4	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|336255678|ref|YP_004598785.1|	-	0.018	14.8	0.0	0.67	9.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DeoRC	PF00455.22	gi|336255678|ref|YP_004598785.1|	-	0.022	14.7	0.0	0.036	14.0	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
PRK	PF00485.18	gi|336255678|ref|YP_004598785.1|	-	0.025	14.3	0.0	0.045	13.5	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_25	PF13481.6	gi|336255678|ref|YP_004598785.1|	-	0.028	14.0	0.0	0.18	11.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|336255678|ref|YP_004598785.1|	-	0.079	11.7	0.0	0.83	8.4	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
ATPase_2	PF01637.18	gi|336255678|ref|YP_004598785.1|	-	0.085	12.8	0.0	0.48	10.3	0.0	2.0	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|336255678|ref|YP_004598785.1|	-	0.1	12.3	0.0	0.26	11.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|336255678|ref|YP_004598785.1|	-	0.15	12.2	0.0	0.34	11.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|336255678|ref|YP_004598785.1|	-	0.18	11.2	0.0	0.3	10.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|336255678|ref|YP_004598785.1|	-	0.2	11.5	0.0	0.37	10.7	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
dCache_1	PF02743.18	gi|336255679|ref|YP_004598786.1|	-	3.6e-09	36.8	0.1	8.5e-09	35.6	0.0	1.6	2	0	0	2	2	2	1	Cache	domain
HATPase_c_2	PF13581.6	gi|336255679|ref|YP_004598786.1|	-	2.3e-08	34.0	1.9	4.9e-08	33.0	0.1	2.3	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c	PF02518.26	gi|336255679|ref|YP_004598786.1|	-	2.6e-08	34.4	0.0	5.9e-08	33.2	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336255679|ref|YP_004598786.1|	-	0.066	13.3	4.8	0.47	10.5	1.1	2.8	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
LapA_dom	PF06305.11	gi|336255679|ref|YP_004598786.1|	-	1.9	8.4	4.8	2.7	7.9	0.2	2.4	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
HisKA_4TM	PF16926.5	gi|336255679|ref|YP_004598786.1|	-	9.4	5.8	11.0	0.12	11.9	2.1	2.5	4	1	0	4	4	4	0	Archaeal	4TM	region	of	histidine	kinase
PhoU	PF01895.19	gi|336255680|ref|YP_004598787.1|	-	4.8e-39	132.7	14.6	8.2e-22	77.5	1.6	2.2	2	0	0	2	2	2	2	PhoU	domain
HalOD1	PF18545.1	gi|336255681|ref|YP_004598788.1|	-	2.9e-09	37.0	2.1	5.5e-09	36.2	2.1	1.4	1	1	0	1	1	1	1	Halobacterial	output	domain	1
HTH_10	PF04967.12	gi|336255682|ref|YP_004598789.1|	-	1.3e-15	57.0	0.1	2.2e-15	56.2	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336255682|ref|YP_004598789.1|	-	8.7e-07	28.9	7.9	8.7e-07	28.9	7.9	1.7	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|336255682|ref|YP_004598789.1|	-	0.011	15.6	0.1	0.028	14.3	0.1	1.7	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|336255682|ref|YP_004598789.1|	-	0.014	15.4	1.2	0.032	14.3	0.1	2.1	2	1	0	2	2	2	0	Helix-turn-helix	domain
MS_channel	PF00924.18	gi|336255683|ref|YP_004598790.1|	-	5.7e-47	159.9	0.4	1.1e-46	159.0	0.0	1.7	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Bactofilin	PF04519.13	gi|336255684|ref|YP_004598791.1|	-	3e-13	49.9	6.4	4.9e-09	36.4	0.2	3.7	2	2	1	3	3	3	3	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|336255684|ref|YP_004598791.1|	-	3.1e-08	33.0	14.1	0.01	15.5	0.0	7.2	6	1	0	7	7	7	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|336255684|ref|YP_004598791.1|	-	0.0043	16.8	12.9	0.04	13.7	0.5	4.9	4	1	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
DUF3494	PF11999.8	gi|336255684|ref|YP_004598791.1|	-	0.023	14.3	0.0	2.3	7.8	0.0	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3494)
Pyr_excise	PF03013.14	gi|336251561|ref|YP_004598792.1|	-	0.038	14.0	0.0	0.042	13.8	0.0	1.1	1	0	0	1	1	1	0	Pyrimidine	dimer	DNA	glycosylase
DUF5333	PF17267.2	gi|336251561|ref|YP_004598792.1|	-	0.071	13.3	0.1	0.12	12.6	0.1	1.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5333)
XLF	PF09302.11	gi|336251561|ref|YP_004598792.1|	-	0.073	13.2	0.1	0.077	13.2	0.1	1.1	1	0	0	1	1	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
Sigma70_r4	PF04545.16	gi|336251561|ref|YP_004598792.1|	-	0.079	12.5	0.5	0.19	11.3	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF3040	PF11239.8	gi|336251562|ref|YP_004598793.1|	-	1.7	8.9	5.6	2.1	8.7	0.1	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF4982	PF16355.5	gi|336251564|ref|YP_004598795.1|	-	0.11	12.5	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4982)
OppC_N	PF12911.7	gi|336251565|ref|YP_004598796.1|	-	0.2	11.7	1.4	0.51	10.4	0.1	2.4	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
AAA_10	PF12846.7	gi|336251567|ref|YP_004598798.1|	-	0.0013	17.7	0.2	0.89	8.4	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_22	PF13401.6	gi|336251567|ref|YP_004598798.1|	-	0.0093	16.2	1.5	7.2	6.9	0.2	3.3	3	1	0	3	3	3	2	AAA	domain
Zot	PF05707.12	gi|336251567|ref|YP_004598798.1|	-	0.13	11.9	0.3	0.7	9.5	0.1	2.0	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DUF87	PF01935.17	gi|336251568|ref|YP_004598799.1|	-	7e-05	23.0	0.1	0.00054	20.1	0.0	2.7	2	1	1	3	3	3	1	Helicase	HerA,	central	domain
TraG-D_C	PF12696.7	gi|336251568|ref|YP_004598799.1|	-	0.011	15.8	0.3	0.047	13.7	0.0	2.1	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
DNA_primase_S	PF01896.19	gi|336251569|ref|YP_004598800.1|	-	1.5e-05	25.1	0.1	0.023	14.8	0.0	2.5	1	1	1	2	2	2	2	DNA	primase	small	subunit
DUF2791	PF10923.8	gi|336251570|ref|YP_004598801.1|	-	0.16	10.7	0.0	0.36	9.6	0.0	1.5	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
TPR_14	PF13428.6	gi|336251570|ref|YP_004598801.1|	-	0.35	11.8	1.4	29	5.8	0.1	3.6	2	1	1	3	3	3	0	Tetratricopeptide	repeat
TrmB	PF01978.19	gi|336251574|ref|YP_004598805.1|	-	2.7e-10	40.0	0.3	1e-09	38.1	0.1	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|336251574|ref|YP_004598805.1|	-	4.1e-05	23.0	0.0	0.00045	19.7	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336251574|ref|YP_004598805.1|	-	7.3e-05	22.8	0.0	0.00021	21.3	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336251574|ref|YP_004598805.1|	-	0.00019	21.2	0.0	0.00048	20.0	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336251574|ref|YP_004598805.1|	-	0.0006	19.7	0.5	0.0018	18.1	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336251574|ref|YP_004598805.1|	-	0.00085	19.1	0.2	0.0058	16.4	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
F-112	PF09645.10	gi|336251574|ref|YP_004598805.1|	-	0.00096	19.2	0.0	1.2	9.3	0.0	2.2	2	0	0	2	2	2	2	F-112	protein
RP-C	PF03428.13	gi|336251574|ref|YP_004598805.1|	-	0.018	14.7	0.0	0.033	13.8	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Penicillinase_R	PF03965.16	gi|336251574|ref|YP_004598805.1|	-	0.022	15.1	0.0	0.042	14.2	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_27	PF13463.6	gi|336251574|ref|YP_004598805.1|	-	0.047	14.2	0.0	0.11	13.0	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|336251574|ref|YP_004598805.1|	-	0.13	12.2	0.0	0.4	10.7	0.0	1.9	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|336251576|ref|YP_004598807.1|	-	3.8e-08	33.1	0.0	8.1e-08	32.0	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336251576|ref|YP_004598807.1|	-	1.6e-06	27.8	0.1	2.9e-05	23.8	0.0	2.5	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|336251576|ref|YP_004598807.1|	-	0.0035	17.1	0.1	0.0071	16.1	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|336251576|ref|YP_004598807.1|	-	0.0039	17.5	0.0	0.0069	16.7	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
F-112	PF09645.10	gi|336251576|ref|YP_004598807.1|	-	0.052	13.7	0.0	0.076	13.1	0.0	1.3	1	0	0	1	1	1	0	F-112	protein
HTH_43	PF09904.9	gi|336251576|ref|YP_004598807.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
AsnC_trans_reg	PF01037.21	gi|336251577|ref|YP_004598808.1|	-	0.11	12.5	0.4	0.91	9.5	0.0	2.2	2	0	0	2	2	2	0	Lrp/AsnC	ligand	binding	domain
PadR	PF03551.14	gi|336251578|ref|YP_004598809.1|	-	2.1e-17	62.9	1.3	2.6e-17	62.5	1.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336251578|ref|YP_004598809.1|	-	0.016	15.2	0.1	0.022	14.7	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|336251578|ref|YP_004598809.1|	-	0.047	13.5	0.0	0.07	13.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
FANCL_C	PF11793.8	gi|336251579|ref|YP_004598810.1|	-	0.00066	19.8	0.9	0.045	13.9	0.1	2.1	2	0	0	2	2	2	1	FANCL	C-terminal	domain
Prok-RING_4	PF14447.6	gi|336251579|ref|YP_004598810.1|	-	0.0014	18.5	1.0	0.031	14.1	0.1	2.1	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
zf-H2C2_2	PF13465.6	gi|336251579|ref|YP_004598810.1|	-	0.0081	16.5	1.0	1.3	9.6	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
PHD_4	PF16866.5	gi|336251579|ref|YP_004598810.1|	-	0.018	15.1	0.3	0.019	15.0	0.3	1.1	1	0	0	1	1	1	0	PHD-finger
zf-C3HC4_3	PF13920.6	gi|336251579|ref|YP_004598810.1|	-	0.019	14.8	0.5	1.6	8.7	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-LITAF-like	PF10601.9	gi|336251579|ref|YP_004598810.1|	-	0.059	13.7	2.6	1	9.6	0.1	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-Di19	PF05605.12	gi|336251579|ref|YP_004598810.1|	-	0.14	12.5	3.3	0.31	11.4	3.3	1.6	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
GAGA	PF09237.11	gi|336251579|ref|YP_004598810.1|	-	0.16	11.8	2.1	0.7	9.7	0.1	2.1	1	1	1	2	2	2	0	GAGA	factor
zinc_ribbon_2	PF13240.6	gi|336251580|ref|YP_004598811.1|	-	2.4e-05	23.9	3.0	3.2e-05	23.5	3.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|336251580|ref|YP_004598811.1|	-	5.8e-05	23.0	0.6	6.5e-05	22.9	0.6	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|336251580|ref|YP_004598811.1|	-	8.1e-05	22.6	0.4	8.4e-05	22.6	0.4	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|336251580|ref|YP_004598811.1|	-	0.00016	22.4	0.3	0.00017	22.3	0.3	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|336251580|ref|YP_004598811.1|	-	0.00026	20.3	3.1	0.00044	19.6	3.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
RecR	PF02132.15	gi|336251580|ref|YP_004598811.1|	-	0.004	16.7	1.3	0.0051	16.4	1.3	1.2	1	0	0	1	1	1	1	RecR	protein
NRDD	PF13597.6	gi|336251580|ref|YP_004598811.1|	-	0.0058	15.5	0.2	0.0058	15.5	0.2	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
Nudix_N_2	PF14803.6	gi|336251580|ref|YP_004598811.1|	-	0.0059	16.5	1.1	0.86	9.6	0.9	2.2	1	1	0	1	1	1	1	Nudix	N-terminal
Rhodanese_C	PF12368.8	gi|336251580|ref|YP_004598811.1|	-	0.008	16.5	0.4	0.0092	16.3	0.4	1.1	1	0	0	1	1	1	1	Rhodanase	C-terminal
Zn-ribbon_8	PF09723.10	gi|336251580|ref|YP_004598811.1|	-	0.025	14.7	5.3	0.23	11.6	5.8	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|336251580|ref|YP_004598811.1|	-	0.046	13.7	3.1	1.6	8.8	0.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|336251580|ref|YP_004598811.1|	-	0.046	13.9	0.3	0.055	13.6	0.3	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C4_Topoisom	PF01396.19	gi|336251580|ref|YP_004598811.1|	-	0.064	13.1	0.5	0.28	11.0	0.0	2.0	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF35_N	PF12172.8	gi|336251580|ref|YP_004598811.1|	-	0.13	12.2	4.8	0.26	11.2	4.8	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
CpXC	PF14353.6	gi|336251580|ref|YP_004598811.1|	-	0.14	12.2	2.0	1.3	9.0	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-RRN7	PF11781.8	gi|336251580|ref|YP_004598811.1|	-	0.17	11.6	5.2	2.7	7.8	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-ISL3	PF14690.6	gi|336251580|ref|YP_004598811.1|	-	0.2	12.3	4.5	5.2	7.8	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
OrfB_Zn_ribbon	PF07282.11	gi|336251580|ref|YP_004598811.1|	-	0.45	10.5	4.0	1.8	8.5	0.5	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|336251580|ref|YP_004598811.1|	-	0.47	10.6	7.4	1.5	8.9	0.8	2.2	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DUF983	PF06170.12	gi|336251580|ref|YP_004598811.1|	-	1.2	9.6	3.8	15	6.1	0.3	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
Rubredoxin_2	PF18073.1	gi|336251580|ref|YP_004598811.1|	-	1.2	8.9	5.6	15	5.4	5.8	2.1	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
ACT_3	PF10000.9	gi|336251582|ref|YP_004598813.1|	-	0.11	12.5	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	ACT	domain
LTD	PF00932.19	gi|336251583|ref|YP_004598814.1|	-	2.4e-25	89.1	4.5	2.4e-25	89.1	4.5	1.9	2	0	0	2	2	2	1	Lamin	Tail	Domain
SNase	PF00565.17	gi|336251583|ref|YP_004598814.1|	-	2.5e-18	66.5	0.0	3.7e-18	66.0	0.0	1.2	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
CAML	PF14963.6	gi|336251583|ref|YP_004598814.1|	-	5.1	7.2	6.6	9.8	6.2	6.6	1.4	1	0	0	1	1	1	0	Calcium	signal-modulating	cyclophilin	ligand
tRNA_anti-codon	PF01336.25	gi|336251585|ref|YP_004598816.1|	-	0.0001	22.2	0.0	0.0002	21.3	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
RdRP_4	PF02123.16	gi|336251585|ref|YP_004598816.1|	-	0.0035	16.3	0.2	0.0043	16.0	0.2	1.1	1	0	0	1	1	1	1	Viral	RNA-directed	RNA-polymerase
NYD-SP28	PF14772.6	gi|336251585|ref|YP_004598816.1|	-	0.015	15.3	2.2	0.015	15.3	2.2	2.1	2	0	0	2	2	2	0	Sperm	tail
DUF4240	PF14024.6	gi|336251585|ref|YP_004598816.1|	-	0.067	13.4	0.6	2.2	8.5	0.3	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4240)
HNH_repeat	PF18780.1	gi|336251586|ref|YP_004598817.1|	-	1.6e-09	37.3	3.3	0.0017	18.1	0.4	3.6	3	0	0	3	3	3	2	Homing	endonuclease	repeat
zf-C2H2_6	PF13912.6	gi|336251586|ref|YP_004598817.1|	-	4.2e-06	26.6	0.1	1e-05	25.4	0.1	1.7	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.6	gi|336251586|ref|YP_004598817.1|	-	0.00032	21.3	0.0	0.0013	19.4	0.0	2.1	1	0	0	1	1	1	1	C2H2-type	zinc	finger
HNH	PF01844.23	gi|336251586|ref|YP_004598817.1|	-	0.0016	18.5	2.4	0.012	15.7	0.3	2.7	2	0	0	2	2	2	1	HNH	endonuclease
zf-C2H2_jaz	PF12171.8	gi|336251586|ref|YP_004598817.1|	-	0.035	14.4	0.1	0.13	12.6	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
BTRD1	PF17660.1	gi|336251586|ref|YP_004598817.1|	-	0.045	13.6	0.4	3.2	7.6	0.1	3.1	3	0	0	3	3	3	0	Bacterial	tandem	repeat	domain	1
Sigma70_r3	PF04539.16	gi|336251586|ref|YP_004598817.1|	-	0.063	13.4	0.8	2.9	8.0	0.1	2.6	3	0	0	3	3	3	0	Sigma-70	region	3
zf-C2H2	PF00096.26	gi|336251586|ref|YP_004598817.1|	-	0.088	13.3	1.0	0.32	11.5	0.0	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
HNH_2	PF13391.6	gi|336251586|ref|YP_004598817.1|	-	0.097	12.8	0.1	0.27	11.4	0.1	1.8	1	0	0	1	1	1	0	HNH	endonuclease
Snapin_Pallidin	PF14712.6	gi|336251586|ref|YP_004598817.1|	-	0.1	13.1	0.2	1.6	9.2	0.1	2.2	2	0	0	2	2	2	0	Snapin/Pallidin
ThiF	PF00899.21	gi|336251587|ref|YP_004598818.1|	-	4.7e-27	94.9	0.0	6.9e-27	94.4	0.0	1.2	1	0	0	1	1	1	1	ThiF	family
Prok-JAB	PF14464.6	gi|336251587|ref|YP_004598818.1|	-	0.00066	19.4	0.1	0.0014	18.4	0.1	1.5	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
Phage_GP20	PF06810.11	gi|336251589|ref|YP_004598820.1|	-	0.0098	15.7	2.0	0.034	14.0	0.5	2.1	1	1	1	2	2	2	1	Phage	minor	structural	protein	GP20
T3SS_needle_E	PF08988.10	gi|336251589|ref|YP_004598820.1|	-	0.033	14.3	0.1	13	6.1	0.0	2.4	2	0	0	2	2	2	0	Type	III	secretion	system,	cytoplasmic	E	component	of	needle
DUF1664	PF07889.12	gi|336251589|ref|YP_004598820.1|	-	0.038	14.0	1.2	1.9	8.6	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
ABC_tran_CTD	PF16326.5	gi|336251589|ref|YP_004598820.1|	-	0.051	13.8	1.5	9.5	6.6	0.1	2.7	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
Multi_ubiq	PF14452.6	gi|336251589|ref|YP_004598820.1|	-	0.11	12.8	2.1	0.2	11.9	0.3	2.4	2	1	0	2	2	2	0	Multiubiquitin
BLOC1_2	PF10046.9	gi|336251589|ref|YP_004598820.1|	-	0.21	11.9	1.8	2.3	8.6	0.1	2.4	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
NPV_P10	PF05531.12	gi|336251589|ref|YP_004598820.1|	-	1.3	9.6	5.2	6.1	7.4	3.6	2.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Radical_SAM	PF04055.21	gi|336251591|ref|YP_004598822.1|	-	1.4e-08	35.3	0.6	8.5e-07	29.5	0.7	2.8	1	1	1	2	2	2	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|336251591|ref|YP_004598822.1|	-	0.44	10.2	1.5	46	3.6	2.4	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1848)
Radical_SAM	PF04055.21	gi|336251592|ref|YP_004598823.1|	-	1.1e-08	35.7	0.0	3.1e-08	34.2	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Imm49	PF15575.6	gi|336251595|ref|YP_004598826.1|	-	0.0044	16.8	0.0	0.013	15.2	0.0	1.5	1	1	0	1	1	1	1	Immunity	protein	49
TPR_12	PF13424.6	gi|336251595|ref|YP_004598826.1|	-	0.015	15.6	0.2	0.23	11.8	0.0	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
NRho	PF16733.5	gi|336251596|ref|YP_004598827.1|	-	0.13	12.3	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Rhomboid	N-terminal	domain
AHD	PF17793.1	gi|336251601|ref|YP_004598832.1|	-	0.054	13.3	0.0	0.09	12.6	0.0	1.3	1	0	0	1	1	1	0	ANC1	homology	domain	(AHD)
TrmB	PF01978.19	gi|336251602|ref|YP_004598833.1|	-	0.0011	18.8	0.0	0.0089	15.9	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|336251602|ref|YP_004598833.1|	-	0.11	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.6	gi|336251602|ref|YP_004598833.1|	-	0.14	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
SWIM	PF04434.17	gi|336251603|ref|YP_004598834.1|	-	0.0024	17.5	0.3	0.0058	16.3	0.3	1.6	1	1	0	1	1	1	1	SWIM	zinc	finger
Rubredoxin_2	PF18073.1	gi|336251603|ref|YP_004598834.1|	-	0.025	14.3	1.5	0.047	13.4	1.5	1.4	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
ComA	PF02679.15	gi|336251604|ref|YP_004598835.1|	-	4.8e-80	268.5	0.0	5.5e-80	268.3	0.0	1.0	1	0	0	1	1	1	1	(2R)-phospho-3-sulfolactate	synthase	(ComA)
Vinculin	PF01044.19	gi|336251604|ref|YP_004598835.1|	-	0.11	10.7	0.0	0.13	10.4	0.0	1.0	1	0	0	1	1	1	0	Vinculin	family
Hydantoinase_A	PF01968.18	gi|336251604|ref|YP_004598835.1|	-	0.15	11.3	0.0	0.22	10.7	0.0	1.3	1	0	0	1	1	1	0	Hydantoinase/oxoprolinase
MmgE_PrpD	PF03972.14	gi|336251605|ref|YP_004598836.1|	-	1.9e-119	399.1	3.2	2.3e-119	398.8	3.2	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
L_biotic_typeA	PF04604.13	gi|336251605|ref|YP_004598836.1|	-	5.9	6.8	4.9	15	5.5	0.9	3.3	3	0	0	3	3	3	0	Type-A	lantibiotic
TFIIB	PF00382.19	gi|336251606|ref|YP_004598837.1|	-	5.2e-27	93.7	0.1	1.2e-12	47.7	0.1	2.5	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|336251606|ref|YP_004598837.1|	-	1.4e-08	34.1	0.4	2.6e-08	33.2	0.4	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
FYVE	PF01363.21	gi|336251606|ref|YP_004598837.1|	-	4.3e-05	23.6	0.1	8.8e-05	22.6	0.1	1.6	1	0	0	1	1	1	1	FYVE	zinc	finger
DnaJ_CXXCXGXG	PF00684.19	gi|336251606|ref|YP_004598837.1|	-	0.016	15.6	6.2	0.061	13.7	2.0	2.5	2	0	0	2	2	2	0	DnaJ	central	domain
RB_B	PF01857.20	gi|336251606|ref|YP_004598837.1|	-	0.061	13.4	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Anti-TRAP	PF15777.5	gi|336251606|ref|YP_004598837.1|	-	0.2	11.7	0.2	0.2	11.7	0.2	2.1	2	1	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zinc-ribbons_6	PF07191.12	gi|336251606|ref|YP_004598837.1|	-	0.2	11.7	3.2	0.12	12.4	0.7	1.9	2	0	0	2	2	2	0	zinc-ribbons
Fic_N	PF13784.6	gi|336251607|ref|YP_004598838.1|	-	3.7e-20	71.7	0.0	6.5e-20	71.0	0.0	1.4	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
Fic	PF02661.18	gi|336251607|ref|YP_004598838.1|	-	4.2e-18	66.0	0.0	1.8e-17	64.0	0.0	2.1	3	0	0	3	3	3	1	Fic/DOC	family
HTH_11	PF08279.12	gi|336251607|ref|YP_004598838.1|	-	2.6e-05	24.1	0.0	5.9e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|336251607|ref|YP_004598838.1|	-	0.00013	21.8	0.2	0.00077	19.3	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4172	PF13776.6	gi|336251607|ref|YP_004598838.1|	-	0.0046	17.3	0.0	0.058	13.7	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4172)
GntR	PF00392.21	gi|336251607|ref|YP_004598838.1|	-	0.015	14.9	0.0	0.072	12.7	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|336251607|ref|YP_004598838.1|	-	0.066	13.3	0.0	0.17	11.9	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|336251607|ref|YP_004598838.1|	-	0.1	12.8	0.0	0.25	11.6	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
RTP	PF02334.16	gi|336251607|ref|YP_004598838.1|	-	0.11	13.2	0.1	0.46	11.1	0.0	2.0	2	0	0	2	2	2	0	Replication	terminator	protein
MarR_2	PF12802.7	gi|336251607|ref|YP_004598838.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HypA	PF01155.19	gi|336251609|ref|YP_004598840.1|	-	0.016	15.2	5.9	0.15	12.1	0.2	2.5	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|336251609|ref|YP_004598840.1|	-	0.071	12.8	1.0	0.071	12.8	1.0	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|336251609|ref|YP_004598840.1|	-	0.074	12.4	6.2	1.1	8.6	0.1	2.7	2	1	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zinc_ribbon_15	PF17032.5	gi|336251609|ref|YP_004598840.1|	-	0.19	12.5	8.1	0.53	11.1	1.2	3.1	3	1	1	4	4	4	0	zinc-ribbon	family
Zn_Tnp_IS1595	PF12760.7	gi|336251609|ref|YP_004598840.1|	-	1.3	9.1	8.0	0.65	10.0	3.1	2.6	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
HATPase_c	PF02518.26	gi|336251611|ref|YP_004598842.1|	-	3.7e-29	101.5	0.0	8.2e-29	100.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336251611|ref|YP_004598842.1|	-	6.6e-13	48.8	0.0	2e-12	47.3	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.25	gi|336251611|ref|YP_004598842.1|	-	3e-12	46.4	1.9	2e-11	43.7	0.4	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|336251611|ref|YP_004598842.1|	-	2.7e-11	43.7	0.0	6.5e-11	42.5	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.12	gi|336251611|ref|YP_004598842.1|	-	7.8e-11	42.1	0.0	5.4e-09	36.2	0.0	2.7	2	0	0	2	2	2	1	PAS	fold
HisKA_4TM	PF16926.5	gi|336251611|ref|YP_004598842.1|	-	3e-09	36.7	0.0	7.3e-09	35.4	0.0	1.7	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
PAS	PF00989.25	gi|336251611|ref|YP_004598842.1|	-	4.5e-08	33.1	0.0	3.5e-07	30.2	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
HATPase_c_5	PF14501.6	gi|336251611|ref|YP_004598842.1|	-	4.8e-07	29.6	0.0	1e-06	28.6	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336251611|ref|YP_004598842.1|	-	0.0016	18.4	0.1	0.0031	17.5	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|336251611|ref|YP_004598842.1|	-	0.003	17.5	0.1	0.011	15.8	0.1	2.0	1	0	0	1	1	1	1	PAS	domain
Pup	PF05639.11	gi|336251611|ref|YP_004598842.1|	-	0.097	13.6	0.8	0.097	13.6	0.8	2.8	2	1	1	3	3	3	0	Pup-like	protein
HATPase_c_3	PF13589.6	gi|336251611|ref|YP_004598842.1|	-	0.14	12.0	0.0	0.29	11.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF5353	PF17304.2	gi|336251611|ref|YP_004598842.1|	-	0.22	11.3	0.2	0.86	9.4	0.0	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5353)
DUF2937	PF11157.8	gi|336251611|ref|YP_004598842.1|	-	0.25	11.1	0.5	2.6	7.7	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
TFIIS_C	PF01096.18	gi|336251612|ref|YP_004598843.1|	-	1.1e-06	28.4	1.6	1.8e-06	27.7	1.6	1.4	1	0	0	1	1	1	1	Transcription	factor	S-II	(TFIIS)
MerR-DNA-bind	PF09278.11	gi|336251612|ref|YP_004598843.1|	-	0.02	15.4	0.7	0.031	14.8	0.1	1.6	2	0	0	2	2	2	0	MerR,	DNA	binding
DNA_ligase_ZBD	PF03119.16	gi|336251612|ref|YP_004598843.1|	-	0.021	14.8	0.2	0.056	13.5	0.2	1.7	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-LITAF-like	PF10601.9	gi|336251612|ref|YP_004598843.1|	-	0.024	14.9	1.0	0.051	13.8	1.0	1.6	1	1	0	1	1	1	0	LITAF-like	zinc	ribbon	domain
zf-CpG_bind_C	PF12269.8	gi|336251612|ref|YP_004598843.1|	-	0.039	13.7	0.1	0.048	13.5	0.1	1.2	1	0	0	1	1	1	0	CpG	binding	protein	zinc	finger	C	terminal	domain
T4_baseplate	PF12322.8	gi|336251612|ref|YP_004598843.1|	-	0.09	12.2	0.2	0.17	11.4	0.1	1.5	2	0	0	2	2	2	0	T4	bacteriophage	base	plate	protein
Ogr_Delta	PF04606.12	gi|336251612|ref|YP_004598843.1|	-	0.37	10.8	1.9	0.78	9.8	1.9	1.6	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
VPS13_mid_rpt	PF16910.5	gi|336251614|ref|YP_004598845.1|	-	0.062	12.7	0.1	0.081	12.3	0.1	1.1	1	0	0	1	1	1	0	Repeating	coiled	region	of	VPS13
Cytochrom_C_2	PF01322.20	gi|336251615|ref|YP_004598846.1|	-	0.1	13.5	0.1	0.13	13.2	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	C'
OrfB_Zn_ribbon	PF07282.11	gi|336251616|ref|YP_004598847.1|	-	0.032	14.2	0.1	0.057	13.3	0.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|336251616|ref|YP_004598847.1|	-	0.12	12.5	1.2	13	6.0	0.2	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|336251616|ref|YP_004598847.1|	-	0.18	11.7	0.2	0.18	11.7	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf_C2H2_10	PF18414.1	gi|336251616|ref|YP_004598847.1|	-	0.42	10.2	6.3	1.8	8.2	0.3	2.3	2	0	0	2	2	2	0	C2H2	type	zinc-finger
A2L_zn_ribbon	PF08792.10	gi|336251616|ref|YP_004598847.1|	-	0.42	10.4	1.6	3.1	7.6	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|336251616|ref|YP_004598847.1|	-	0.57	10.1	0.1	0.57	10.1	0.1	2.6	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
DUF3797	PF12677.7	gi|336251616|ref|YP_004598847.1|	-	2.4	8.1	5.9	2.1	8.3	0.5	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DUF2318	PF10080.9	gi|336251617|ref|YP_004598848.1|	-	0.013	15.6	0.2	0.017	15.2	0.2	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
RPA_interact_C	PF14768.6	gi|336251617|ref|YP_004598848.1|	-	0.021	15.4	0.3	0.027	15.0	0.3	1.2	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
DZR	PF12773.7	gi|336251617|ref|YP_004598848.1|	-	0.026	14.5	0.8	0.043	13.8	0.8	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbon_6	PF10005.9	gi|336251617|ref|YP_004598848.1|	-	0.038	14.7	0.8	0.054	14.2	0.8	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|336251617|ref|YP_004598848.1|	-	0.062	13.2	3.5	2.4	8.2	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.6	gi|336251617|ref|YP_004598848.1|	-	0.097	12.4	2.2	7.3	6.5	0.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336251617|ref|YP_004598848.1|	-	0.12	12.5	1.0	18	5.5	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
GFA	PF04828.14	gi|336251617|ref|YP_004598848.1|	-	0.16	12.3	2.2	1.7	9.0	0.3	2.3	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DNA_ligase_ZBD	PF03119.16	gi|336251617|ref|YP_004598848.1|	-	0.26	11.4	4.2	0.9	9.6	0.5	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Mrr_cat	PF04471.12	gi|336251620|ref|YP_004598851.1|	-	2.8e-28	98.3	0.0	5.4e-28	97.3	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
DZR	PF12773.7	gi|336251620|ref|YP_004598851.1|	-	0.0052	16.8	0.3	0.0052	16.8	0.3	1.8	2	0	0	2	2	2	1	Double	zinc	ribbon
Siva	PF05458.12	gi|336251620|ref|YP_004598851.1|	-	0.015	15.0	1.7	0.023	14.4	1.7	1.2	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
Mrr_cat_2	PF13156.6	gi|336251620|ref|YP_004598851.1|	-	0.018	14.9	0.0	0.036	14.0	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease
zf-ribbon_3	PF13248.6	gi|336251620|ref|YP_004598851.1|	-	0.039	13.4	2.5	0.1	12.0	2.5	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336251620|ref|YP_004598851.1|	-	0.055	14.2	0.4	0.055	14.2	0.4	1.9	2	0	0	2	2	2	0	zinc-ribbon	family
DUF3797	PF12677.7	gi|336251620|ref|YP_004598851.1|	-	0.11	12.3	0.5	0.37	10.7	0.5	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
NOB1_Zn_bind	PF08772.11	gi|336251620|ref|YP_004598851.1|	-	0.32	11.2	2.1	0.86	9.8	2.1	1.7	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_2	PF13240.6	gi|336251620|ref|YP_004598851.1|	-	0.37	10.6	5.5	0.11	12.2	2.3	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
HNH_3	PF13392.6	gi|336251621|ref|YP_004598852.1|	-	1.1e-10	41.1	0.7	1.9e-10	40.3	0.7	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HTH_23	PF13384.6	gi|336251621|ref|YP_004598852.1|	-	1.8e-06	27.6	0.1	4.6e-06	26.3	0.1	1.7	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|336251621|ref|YP_004598852.1|	-	7.2e-05	22.8	0.4	0.00029	20.9	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|336251621|ref|YP_004598852.1|	-	0.00023	20.8	0.0	0.00036	20.2	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
YdaS_antitoxin	PF15943.5	gi|336251621|ref|YP_004598852.1|	-	0.00049	19.9	0.0	0.00076	19.3	0.0	1.3	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
Sigma70_r4	PF04545.16	gi|336251621|ref|YP_004598852.1|	-	0.00086	18.8	0.0	0.0017	17.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|336251621|ref|YP_004598852.1|	-	0.004	16.9	0.0	0.0073	16.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|336251621|ref|YP_004598852.1|	-	0.0053	16.6	0.1	0.01	15.7	0.1	1.5	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_24	PF13412.6	gi|336251621|ref|YP_004598852.1|	-	0.0073	15.8	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GcrA	PF07750.11	gi|336251621|ref|YP_004598852.1|	-	0.0076	16.7	0.0	0.0094	16.4	0.0	1.2	1	0	0	1	1	1	1	GcrA	cell	cycle	regulator
HTH_3	PF01381.22	gi|336251621|ref|YP_004598852.1|	-	0.011	15.7	0.0	0.024	14.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
DUF746	PF05344.11	gi|336251621|ref|YP_004598852.1|	-	0.014	15.2	0.0	0.027	14.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
MarR	PF01047.22	gi|336251621|ref|YP_004598852.1|	-	0.015	15.2	0.0	0.031	14.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|336251621|ref|YP_004598852.1|	-	0.028	14.3	0.0	0.047	13.6	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_31	PF13560.6	gi|336251621|ref|YP_004598852.1|	-	0.038	14.3	0.2	0.11	12.9	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336251621|ref|YP_004598852.1|	-	0.04	13.9	0.0	0.079	13.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
MarR_2	PF12802.7	gi|336251621|ref|YP_004598852.1|	-	0.043	13.7	0.0	0.09	12.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|336251621|ref|YP_004598852.1|	-	0.044	13.8	0.0	0.089	12.8	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
UPF0122	PF04297.14	gi|336251621|ref|YP_004598852.1|	-	0.045	14.0	0.0	0.075	13.3	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
GerE	PF00196.19	gi|336251621|ref|YP_004598852.1|	-	0.045	13.3	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_AsnC-type	PF13404.6	gi|336251621|ref|YP_004598852.1|	-	0.048	13.5	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Phage_terminase	PF10668.9	gi|336251621|ref|YP_004598852.1|	-	0.056	13.5	0.6	0.11	12.6	0.0	1.8	2	0	0	2	2	1	0	Phage	terminase	small	subunit
Peptidase_S15	PF02129.18	gi|336251621|ref|YP_004598852.1|	-	0.056	13.0	0.0	0.066	12.8	0.0	1.3	1	0	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
DUF1323	PF07037.11	gi|336251621|ref|YP_004598852.1|	-	0.065	13.6	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
Crp	PF00325.20	gi|336251621|ref|YP_004598852.1|	-	0.066	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_17	PF12728.7	gi|336251621|ref|YP_004598852.1|	-	0.099	12.8	0.0	0.19	11.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_50	PF18024.1	gi|336251621|ref|YP_004598852.1|	-	0.1	12.2	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|336251621|ref|YP_004598852.1|	-	0.1	12.7	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
ZnuA	PF01297.17	gi|336251622|ref|YP_004598853.1|	-	1.9e-40	138.9	0.0	2.3e-40	138.6	0.0	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
TAT_signal	PF10518.9	gi|336251622|ref|YP_004598853.1|	-	0.49	10.3	6.8	0.97	9.4	6.8	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|336251623|ref|YP_004598854.1|	-	8.8e-32	110.5	0.0	1.2e-31	110.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336251623|ref|YP_004598854.1|	-	1.5e-11	44.7	0.2	1.1e-05	25.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|336251623|ref|YP_004598854.1|	-	2.3e-05	24.0	0.0	4.9e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|336251623|ref|YP_004598854.1|	-	5.2e-05	23.0	0.0	9.7e-05	22.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|336251623|ref|YP_004598854.1|	-	5.3e-05	22.8	0.0	0.0089	15.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|336251623|ref|YP_004598854.1|	-	0.00016	22.1	0.3	0.00033	21.1	0.3	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|336251623|ref|YP_004598854.1|	-	0.00089	19.1	0.0	0.0011	18.8	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336251623|ref|YP_004598854.1|	-	0.0023	18.5	0.0	0.0033	18.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|336251623|ref|YP_004598854.1|	-	0.0049	16.8	0.0	0.026	14.4	0.0	2.0	1	1	0	1	1	1	1	NTPase
AAA_22	PF13401.6	gi|336251623|ref|YP_004598854.1|	-	0.0098	16.2	0.1	0.12	12.7	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|336251623|ref|YP_004598854.1|	-	0.018	15.2	0.0	0.047	13.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|336251623|ref|YP_004598854.1|	-	0.02	14.9	0.2	0.1	12.6	0.1	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SbcCD_C	PF13558.6	gi|336251623|ref|YP_004598854.1|	-	0.02	15.1	0.8	0.43	10.8	0.8	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.12	gi|336251623|ref|YP_004598854.1|	-	0.021	14.8	0.0	0.033	14.1	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|336251623|ref|YP_004598854.1|	-	0.029	14.3	0.0	0.075	12.9	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
ABC_ATPase	PF09818.9	gi|336251623|ref|YP_004598854.1|	-	0.039	12.7	0.2	3.8	6.2	0.1	2.9	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_25	PF13481.6	gi|336251623|ref|YP_004598854.1|	-	0.044	13.4	0.2	0.66	9.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|336251623|ref|YP_004598854.1|	-	0.09	11.9	0.0	0.17	11.0	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|336251623|ref|YP_004598854.1|	-	0.1	12.0	0.0	0.19	11.1	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|336251623|ref|YP_004598854.1|	-	0.13	11.8	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
MMR_HSR1	PF01926.23	gi|336251623|ref|YP_004598854.1|	-	0.13	12.3	0.1	0.23	11.5	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|336251623|ref|YP_004598854.1|	-	0.15	11.8	0.1	7.5	6.3	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
cobW	PF02492.19	gi|336251623|ref|YP_004598854.1|	-	0.16	11.6	0.0	0.32	10.6	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC-3	PF00950.17	gi|336251624|ref|YP_004598855.1|	-	6.3e-59	199.6	41.0	7.9e-59	199.2	41.0	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|336251624|ref|YP_004598855.1|	-	3e-05	23.2	37.6	3e-05	23.2	37.6	1.7	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.6	gi|336251624|ref|YP_004598855.1|	-	0.031	14.5	0.5	0.11	12.7	0.5	1.9	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
Glycophorin_A	PF01102.18	gi|336251624|ref|YP_004598855.1|	-	2.5	8.4	5.8	32	4.8	0.0	3.0	2	1	0	2	2	2	0	Glycophorin	A
Fe_dep_repr_C	PF02742.15	gi|336251625|ref|YP_004598856.1|	-	3.7e-29	100.6	0.4	6.5e-29	99.8	0.4	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|336251625|ref|YP_004598856.1|	-	4.1e-19	68.5	0.9	9.3e-19	67.4	0.9	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.14	gi|336251625|ref|YP_004598856.1|	-	1.2e-13	51.1	0.4	2.5e-13	50.1	0.3	1.6	2	0	0	2	2	1	1	FeoA	domain
MarR_2	PF12802.7	gi|336251625|ref|YP_004598856.1|	-	6e-08	32.5	0.1	2.5e-07	30.5	0.0	2.0	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|336251625|ref|YP_004598856.1|	-	1.3e-07	31.4	0.1	2.1e-06	27.6	0.0	2.5	3	0	0	3	3	2	1	MarR	family
HTH_20	PF12840.7	gi|336251625|ref|YP_004598856.1|	-	7.6e-07	29.1	0.0	2.8e-06	27.3	0.0	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|336251625|ref|YP_004598856.1|	-	2.9e-06	27.2	0.1	6.6e-06	26.0	0.1	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336251625|ref|YP_004598856.1|	-	5.4e-06	26.8	0.3	1.5e-05	25.4	0.3	1.8	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|336251625|ref|YP_004598856.1|	-	2.5e-05	23.8	0.1	0.00011	21.8	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_12	PF08461.10	gi|336251625|ref|YP_004598856.1|	-	3e-05	23.9	0.0	9.6e-05	22.3	0.0	1.9	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.19	gi|336251625|ref|YP_004598856.1|	-	6.2e-05	22.8	0.1	0.00012	21.9	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|336251625|ref|YP_004598856.1|	-	6.8e-05	22.6	0.0	0.00015	21.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|336251625|ref|YP_004598856.1|	-	9e-05	22.0	0.0	0.00018	21.0	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_1	PF00126.27	gi|336251625|ref|YP_004598856.1|	-	0.00014	21.7	0.2	0.0015	18.4	0.0	2.4	2	1	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Rrf2	PF02082.20	gi|336251625|ref|YP_004598856.1|	-	0.00019	21.7	0.1	0.0016	18.7	0.1	2.2	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|336251625|ref|YP_004598856.1|	-	0.00034	20.5	0.1	0.00076	19.4	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.10	gi|336251625|ref|YP_004598856.1|	-	0.003	17.3	0.8	0.007	16.1	0.1	2.0	2	0	0	2	2	1	1	IclR	helix-turn-helix	domain
DUF2250	PF10007.9	gi|336251625|ref|YP_004598856.1|	-	0.0048	17.0	0.1	0.0088	16.1	0.1	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HxlR	PF01638.17	gi|336251625|ref|YP_004598856.1|	-	0.0072	16.2	0.0	0.013	15.4	0.0	1.4	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_36	PF13730.6	gi|336251625|ref|YP_004598856.1|	-	0.0089	16.0	0.0	0.017	15.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|336251625|ref|YP_004598856.1|	-	0.015	15.1	0.5	0.039	13.7	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
AF0941-like	PF14591.6	gi|336251625|ref|YP_004598856.1|	-	0.015	15.8	0.0	0.027	15.0	0.0	1.4	1	0	0	1	1	1	0	AF0941-like
HTH_AsnC-type	PF13404.6	gi|336251625|ref|YP_004598856.1|	-	0.019	14.8	0.0	0.044	13.6	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|336251625|ref|YP_004598856.1|	-	0.029	14.7	0.1	0.063	13.6	0.1	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_10	PF04967.12	gi|336251625|ref|YP_004598856.1|	-	0.031	14.1	0.0	0.067	13.0	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Topoisom_bac	PF01131.20	gi|336251625|ref|YP_004598856.1|	-	0.034	13.1	0.0	0.047	12.7	0.0	1.2	1	0	0	1	1	1	0	DNA	topoisomerase
BLACT_WH	PF17778.1	gi|336251625|ref|YP_004598856.1|	-	0.055	13.5	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
HTH_DeoR	PF08220.12	gi|336251625|ref|YP_004598856.1|	-	0.078	12.7	0.1	0.22	11.3	0.1	1.8	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF505	PF04458.12	gi|336251625|ref|YP_004598856.1|	-	0.085	11.2	0.1	0.11	10.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_CodY	PF08222.11	gi|336251625|ref|YP_004598856.1|	-	0.11	12.1	0.0	0.32	10.6	0.0	1.8	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
DUF4423	PF14394.6	gi|336251625|ref|YP_004598856.1|	-	0.19	11.4	0.0	0.3	10.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF993	PF06187.11	gi|336251627|ref|YP_004598858.1|	-	0.0051	15.8	0.1	0.0077	15.2	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF993)
DUF402	PF04167.13	gi|336251627|ref|YP_004598858.1|	-	0.06	13.5	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF402)
ACP53EA	PF06313.11	gi|336251628|ref|YP_004598859.1|	-	0.075	13.2	0.0	0.12	12.6	0.0	1.4	1	1	0	1	1	1	0	Drosophila	ACP53EA	protein
Peptidase_M78	PF06114.13	gi|336251631|ref|YP_004598862.1|	-	0.0019	18.1	0.0	0.0034	17.3	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
SprT-like	PF10263.9	gi|336251631|ref|YP_004598862.1|	-	0.016	15.0	0.1	0.051	13.4	0.1	1.8	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|336251631|ref|YP_004598862.1|	-	0.081	12.3	0.0	0.18	11.1	0.0	1.5	1	0	0	1	1	1	0	Putative	aminopeptidase
DUF2268	PF10026.9	gi|336251631|ref|YP_004598862.1|	-	0.13	11.8	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF2274	PF10038.9	gi|336251632|ref|YP_004598863.1|	-	0.061	13.8	0.5	2.8	8.5	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
Cdc6_C	PF09079.11	gi|336251633|ref|YP_004598864.1|	-	8.1e-14	51.4	0.0	3e-13	49.5	0.0	2.0	3	0	0	3	3	3	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|336251633|ref|YP_004598864.1|	-	1.1e-11	45.5	0.0	3.1e-11	44.0	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|336251633|ref|YP_004598864.1|	-	1.3e-10	41.8	0.0	2.9e-10	40.7	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|336251633|ref|YP_004598864.1|	-	4.4e-08	33.5	0.0	1.1e-07	32.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|336251633|ref|YP_004598864.1|	-	1.6e-06	27.5	0.0	3.7e-06	26.3	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|336251633|ref|YP_004598864.1|	-	0.0001	22.3	0.0	0.00027	21.0	0.0	1.7	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|336251633|ref|YP_004598864.1|	-	0.00012	21.6	0.0	0.00022	20.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|336251633|ref|YP_004598864.1|	-	0.0024	17.8	0.0	0.0046	16.9	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|336251633|ref|YP_004598864.1|	-	0.013	15.2	0.0	0.024	14.4	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|336251633|ref|YP_004598864.1|	-	0.025	14.1	0.0	0.13	11.8	0.0	2.0	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|336251633|ref|YP_004598864.1|	-	0.046	13.4	0.1	0.16	11.6	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336251633|ref|YP_004598864.1|	-	0.082	12.7	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Mg_chelatase	PF01078.21	gi|336251633|ref|YP_004598864.1|	-	0.096	12.0	0.0	0.19	11.1	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_PrkA	PF08298.11	gi|336251633|ref|YP_004598864.1|	-	0.096	11.6	0.0	0.15	11.0	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
IstB_IS21	PF01695.17	gi|336251633|ref|YP_004598864.1|	-	0.13	12.0	0.0	0.93	9.2	0.0	2.3	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_19	PF13245.6	gi|336251633|ref|YP_004598864.1|	-	0.14	12.5	0.0	0.28	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PIN	PF01850.21	gi|336251635|ref|YP_004598866.1|	-	0.0009	19.7	0.2	0.011	16.2	0.2	2.1	1	1	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|336251635|ref|YP_004598866.1|	-	0.0011	19.5	0.2	0.0018	18.8	0.2	1.3	1	1	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|336251635|ref|YP_004598866.1|	-	0.0017	19.1	0.3	0.0023	18.7	0.3	1.3	1	0	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|336251635|ref|YP_004598866.1|	-	0.0044	16.7	0.0	0.017	14.9	0.0	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5615)
AAA_31	PF13614.6	gi|336251636|ref|YP_004598867.1|	-	1.3e-18	67.5	0.0	1.9e-18	67.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|336251636|ref|YP_004598867.1|	-	4.5e-12	46.1	0.0	6.9e-12	45.5	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|336251636|ref|YP_004598867.1|	-	2.2e-07	30.6	0.1	1.3e-06	28.0	0.1	2.0	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|336251636|ref|YP_004598867.1|	-	2.4e-05	23.7	0.1	7.1e-05	22.1	0.1	1.7	1	1	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|336251636|ref|YP_004598867.1|	-	0.00043	19.7	0.1	0.51	9.6	0.0	2.3	1	1	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|336251636|ref|YP_004598867.1|	-	0.00089	18.8	0.0	0.0025	17.3	0.0	1.7	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|336251636|ref|YP_004598867.1|	-	0.031	13.7	0.0	0.071	12.5	0.0	1.6	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
DUF2543	PF10820.8	gi|336251637|ref|YP_004598868.1|	-	0.13	12.4	0.0	0.19	11.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2543)
Pyr_redox_2	PF07992.14	gi|336251638|ref|YP_004598869.1|	-	2e-30	106.1	0.0	2.6e-30	105.7	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336251638|ref|YP_004598869.1|	-	3.7e-15	56.0	0.0	7e-10	38.7	0.0	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336251638|ref|YP_004598869.1|	-	1.2e-07	32.2	0.0	0.0062	17.1	0.2	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|336251638|ref|YP_004598869.1|	-	1.1e-05	24.7	4.4	1.6e-05	24.2	1.0	2.3	2	1	1	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|336251638|ref|YP_004598869.1|	-	2.6e-05	23.1	0.1	0.00083	18.2	0.4	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|336251638|ref|YP_004598869.1|	-	3.5e-05	23.2	1.2	0.00015	21.1	1.0	1.9	1	1	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336251638|ref|YP_004598869.1|	-	3.7e-05	23.3	2.4	6.8e-05	22.4	2.4	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|336251638|ref|YP_004598869.1|	-	6.1e-05	22.8	1.6	0.001	18.8	1.2	2.5	1	1	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|336251638|ref|YP_004598869.1|	-	7e-05	23.0	0.1	0.00026	21.2	0.3	1.9	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|336251638|ref|YP_004598869.1|	-	0.00014	21.1	0.2	0.00031	19.9	0.2	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|336251638|ref|YP_004598869.1|	-	0.0019	17.5	0.2	0.0029	17.0	0.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
K_oxygenase	PF13434.6	gi|336251638|ref|YP_004598869.1|	-	0.008	15.4	0.0	0.022	13.9	0.0	1.6	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|336251638|ref|YP_004598869.1|	-	0.011	15.8	0.3	1.9	8.5	0.0	3.1	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Thi4	PF01946.17	gi|336251638|ref|YP_004598869.1|	-	0.034	13.4	0.1	0.059	12.6	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
Trp_halogenase	PF04820.14	gi|336251638|ref|YP_004598869.1|	-	0.041	12.7	0.3	0.21	10.4	0.3	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|336251639|ref|YP_004598870.1|	-	2.5e-42	145.1	0.6	3.1e-42	144.8	0.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336251639|ref|YP_004598870.1|	-	4.2e-20	72.1	0.3	1.9e-17	63.6	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336251639|ref|YP_004598870.1|	-	5.1e-17	62.1	0.3	9.1e-13	48.1	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|336251639|ref|YP_004598870.1|	-	8.9e-10	38.2	7.8	6.1e-06	25.6	0.2	4.1	4	1	1	5	5	5	3	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336251639|ref|YP_004598870.1|	-	5.1e-07	29.4	0.2	1.5e-05	24.5	0.1	2.3	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|336251639|ref|YP_004598870.1|	-	2e-06	27.7	8.0	0.00013	21.6	0.3	3.8	3	1	1	4	4	4	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|336251639|ref|YP_004598870.1|	-	3.6e-06	27.1	0.1	3.5e-05	23.9	0.1	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|336251639|ref|YP_004598870.1|	-	1.9e-05	24.0	0.1	0.00092	18.5	0.0	2.4	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.14	gi|336251639|ref|YP_004598870.1|	-	2.2e-05	23.3	0.1	0.021	13.5	0.1	3.2	3	0	0	3	3	3	1	HI0933-like	protein
GIDA	PF01134.22	gi|336251639|ref|YP_004598870.1|	-	5.7e-05	22.4	0.5	0.01	14.9	0.0	3.0	4	0	0	4	4	4	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|336251639|ref|YP_004598870.1|	-	0.00012	21.2	0.6	0.094	11.7	0.3	2.9	3	0	0	3	3	3	2	Lycopene	cyclase	protein
NAD_binding_7	PF13241.6	gi|336251639|ref|YP_004598870.1|	-	0.00042	20.7	0.0	0.0031	17.9	0.0	2.1	2	0	0	2	2	2	1	Putative	NAD(P)-binding
K_oxygenase	PF13434.6	gi|336251639|ref|YP_004598870.1|	-	0.0021	17.2	0.0	0.085	12.0	0.0	2.2	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.21	gi|336251639|ref|YP_004598870.1|	-	0.003	16.9	0.2	0.12	11.7	0.2	2.3	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|336251639|ref|YP_004598870.1|	-	0.003	16.9	3.3	1.8	7.7	0.3	3.4	2	1	1	3	3	3	1	FAD	binding	domain
MCRA	PF06100.11	gi|336251639|ref|YP_004598870.1|	-	0.099	11.4	0.2	0.2	10.4	0.1	1.5	2	0	0	2	2	2	0	MCRA	family
FMO-like	PF00743.19	gi|336251639|ref|YP_004598870.1|	-	0.27	9.6	0.0	8	4.8	0.0	2.0	2	0	0	2	2	2	0	Flavin-binding	monooxygenase-like
Thioredoxin	PF00085.20	gi|336251640|ref|YP_004598871.1|	-	3.1e-28	97.8	0.0	3.4e-28	97.7	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336251640|ref|YP_004598871.1|	-	2.5e-11	44.0	0.0	1.8e-09	38.0	0.0	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|336251640|ref|YP_004598871.1|	-	2.4e-06	27.8	0.0	0.0012	19.1	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.6	gi|336251640|ref|YP_004598871.1|	-	9.5e-06	25.7	0.1	1.9e-05	24.7	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin-like
TraF	PF13728.6	gi|336251640|ref|YP_004598871.1|	-	1.1e-05	25.4	0.0	1.5e-05	25.0	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_9	PF14595.6	gi|336251640|ref|YP_004598871.1|	-	2e-05	24.4	0.0	2.3e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.20	gi|336251640|ref|YP_004598871.1|	-	7.1e-05	22.7	0.2	0.0011	18.7	0.0	2.0	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
HyaE	PF07449.11	gi|336251640|ref|YP_004598871.1|	-	0.0008	19.4	0.0	0.0013	18.7	0.0	1.3	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
OST3_OST6	PF04756.13	gi|336251640|ref|YP_004598871.1|	-	0.0027	17.1	0.0	0.0034	16.8	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|336251640|ref|YP_004598871.1|	-	0.012	15.6	0.0	0.035	14.0	0.0	1.7	1	1	0	1	1	1	0	AhpC/TSA	family
Thioredoxin_3	PF13192.6	gi|336251640|ref|YP_004598871.1|	-	0.013	15.5	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|336251640|ref|YP_004598871.1|	-	0.029	14.6	0.0	0.053	13.7	0.0	1.5	1	0	0	1	1	1	0	Glutaredoxin
DUF836	PF05768.14	gi|336251640|ref|YP_004598871.1|	-	0.031	14.7	0.0	0.041	14.3	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.6	gi|336251640|ref|YP_004598871.1|	-	0.12	12.0	0.0	0.19	11.4	0.0	1.4	1	1	0	1	1	1	0	Thioredoxin
Methyltransf_11	PF08241.12	gi|336251641|ref|YP_004598872.1|	-	4.4e-20	72.1	0.0	7.1e-20	71.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336251641|ref|YP_004598872.1|	-	1.3e-19	70.7	0.0	2.2e-19	70.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336251641|ref|YP_004598872.1|	-	1.8e-19	70.0	0.0	2.3e-19	69.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|336251641|ref|YP_004598872.1|	-	4.8e-16	58.9	0.0	6.5e-16	58.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336251641|ref|YP_004598872.1|	-	1.8e-13	51.0	0.0	3e-13	50.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336251641|ref|YP_004598872.1|	-	1.6e-12	47.6	0.0	2.2e-12	47.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|336251641|ref|YP_004598872.1|	-	4.8e-11	42.8	0.0	6.8e-11	42.3	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.10	gi|336251641|ref|YP_004598872.1|	-	0.00022	21.0	0.0	0.0003	20.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltr_RsmB-F	PF01189.17	gi|336251641|ref|YP_004598872.1|	-	0.00027	20.6	0.0	0.00044	19.9	0.0	1.3	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
NodS	PF05401.11	gi|336251641|ref|YP_004598872.1|	-	0.0019	17.8	0.0	0.0028	17.3	0.0	1.3	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
RrnaAD	PF00398.20	gi|336251641|ref|YP_004598872.1|	-	0.002	17.2	0.0	0.0025	16.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Fibrillarin	PF01269.17	gi|336251641|ref|YP_004598872.1|	-	0.003	16.7	0.0	0.0035	16.5	0.0	1.1	1	0	0	1	1	1	1	Fibrillarin
DREV	PF05219.12	gi|336251641|ref|YP_004598872.1|	-	0.0032	16.6	0.0	0.0089	15.1	0.0	1.6	1	1	0	1	1	1	1	DREV	methyltransferase
Methyltransf_4	PF02390.17	gi|336251641|ref|YP_004598872.1|	-	0.0033	16.9	0.0	0.013	14.9	0.0	1.8	2	0	0	2	2	2	1	Putative	methyltransferase
DUF938	PF06080.12	gi|336251641|ref|YP_004598872.1|	-	0.013	15.3	0.0	0.021	14.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_32	PF13679.6	gi|336251641|ref|YP_004598872.1|	-	0.013	15.5	0.0	0.019	15.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|336251641|ref|YP_004598872.1|	-	0.024	13.8	0.0	0.035	13.3	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
CMAS	PF02353.20	gi|336251641|ref|YP_004598872.1|	-	0.03	13.6	0.0	0.035	13.4	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_24	PF13578.6	gi|336251641|ref|YP_004598872.1|	-	0.064	14.3	0.0	0.13	13.2	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|336251641|ref|YP_004598872.1|	-	0.11	12.0	0.0	0.22	11.1	0.0	1.4	2	0	0	2	2	2	0	Methyltransferase	small	domain
CheR	PF01739.18	gi|336251641|ref|YP_004598872.1|	-	0.26	10.7	0.0	1.3	8.5	0.0	1.8	2	0	0	2	2	2	0	CheR	methyltransferase,	SAM	binding	domain
DUF302	PF03625.14	gi|336251642|ref|YP_004598873.1|	-	1.4e-26	92.2	0.0	1.9e-26	91.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
DUF3215	PF11503.8	gi|336251642|ref|YP_004598873.1|	-	0.085	12.7	0.3	0.085	12.7	0.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3215)
Rhodanese	PF00581.20	gi|336251643|ref|YP_004598874.1|	-	2.3e-13	50.6	0.0	4.1e-13	49.8	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B	PF00753.27	gi|336251643|ref|YP_004598874.1|	-	5.3e-13	49.4	4.2	1.1e-12	48.3	4.2	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336251643|ref|YP_004598874.1|	-	0.002	17.7	0.5	0.0083	15.7	0.5	1.9	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336251643|ref|YP_004598874.1|	-	0.021	14.7	0.2	0.051	13.5	0.2	1.8	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
adh_short_C2	PF13561.6	gi|336251644|ref|YP_004598875.1|	-	4e-61	206.6	0.2	4.4e-61	206.4	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251644|ref|YP_004598875.1|	-	2.4e-42	144.6	0.0	3e-42	144.3	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251644|ref|YP_004598875.1|	-	2e-10	40.9	0.0	2.7e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	KR	domain
TcdA_TcdB_pore	PF12920.7	gi|336251645|ref|YP_004598876.1|	-	0.96	7.6	1.8	1	7.5	1.8	1.0	1	0	0	1	1	1	0	TcdA/TcdB	pore	forming	domain
Usp	PF00582.26	gi|336251646|ref|YP_004598877.1|	-	1.3e-62	210.5	15.1	1.4e-34	119.6	4.6	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF2478	PF10649.9	gi|336251646|ref|YP_004598877.1|	-	0.015	14.9	3.2	2.8	7.5	0.2	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2478)
SRP54	PF00448.22	gi|336251646|ref|YP_004598877.1|	-	0.022	14.4	0.2	0.34	10.5	0.0	2.5	1	1	2	3	3	3	0	SRP54-type	protein,	GTPase	domain
Bac_thur_toxin	PF01338.18	gi|336251646|ref|YP_004598877.1|	-	0.028	13.9	0.0	0.044	13.2	0.0	1.2	1	0	0	1	1	1	0	Bacillus	thuringiensis	toxin
AP_endonuc_2	PF01261.24	gi|336251646|ref|YP_004598877.1|	-	0.21	11.0	3.5	0.15	11.5	0.7	2.2	2	2	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.26	gi|336251647|ref|YP_004598878.1|	-	4.2e-09	37.1	0.3	4.9e-09	36.8	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
PAC2	PF09754.9	gi|336251648|ref|YP_004598879.1|	-	1.3e-27	97.2	0.0	1.5e-27	97.0	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
ABC2_membrane_2	PF12679.7	gi|336251649|ref|YP_004598880.1|	-	2.3e-14	53.3	18.0	1.1e-13	51.1	18.0	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|336251649|ref|YP_004598880.1|	-	2.9e-07	29.9	7.4	2.9e-07	29.9	7.4	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|336251649|ref|YP_004598880.1|	-	1e-06	28.5	6.9	2.4e-06	27.3	6.3	1.9	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|336251649|ref|YP_004598880.1|	-	1.4e-05	24.6	10.0	1.4e-05	24.6	10.0	1.7	2	1	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|336251649|ref|YP_004598880.1|	-	2.4e-05	24.4	5.1	2.4e-05	24.4	5.1	2.0	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
NPCBM_assoc	PF10633.9	gi|336251650|ref|YP_004598881.1|	-	1.2e-05	25.4	10.2	0.056	13.7	0.3	3.4	2	1	0	2	2	2	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|336251650|ref|YP_004598881.1|	-	6.5e-05	23.2	12.0	0.031	14.6	5.1	3.9	2	2	1	3	3	3	2	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|336251650|ref|YP_004598881.1|	-	0.00011	22.4	8.2	0.11	12.8	4.3	2.9	2	1	0	2	2	2	2	CARDB
Fn3-like	PF14310.6	gi|336251650|ref|YP_004598881.1|	-	0.018	15.1	0.9	1.9	8.6	0.0	3.4	3	0	0	3	3	3	0	Fibronectin	type	III-like	domain
DUF4981	PF16353.5	gi|336251650|ref|YP_004598881.1|	-	0.091	13.3	0.3	33	5.0	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function(DUF4981)
DUF2393	PF09624.10	gi|336251650|ref|YP_004598881.1|	-	0.22	11.5	0.0	9.1	6.3	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2393)
DUF3869	PF12985.7	gi|336251650|ref|YP_004598881.1|	-	0.28	11.6	4.4	0.43	11.0	2.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3869)
DUF4750	PF15938.5	gi|336251650|ref|YP_004598881.1|	-	9.6	6.0	6.8	2.5	7.8	0.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4750)
ABC_tran	PF00005.27	gi|336251651|ref|YP_004598882.1|	-	1.3e-26	93.8	0.0	1.8e-26	93.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336251651|ref|YP_004598882.1|	-	4.5e-12	46.4	1.0	6.5e-07	29.5	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336251651|ref|YP_004598882.1|	-	0.00022	21.9	0.0	0.00038	21.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|336251651|ref|YP_004598882.1|	-	0.00098	19.7	0.1	0.0015	19.1	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|336251651|ref|YP_004598882.1|	-	0.0079	15.9	0.1	0.014	15.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|336251651|ref|YP_004598882.1|	-	0.06	12.9	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|336251651|ref|YP_004598882.1|	-	0.073	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
SOUL	PF04832.12	gi|336251652|ref|YP_004598883.1|	-	1.6e-43	148.8	1.1	2.4e-42	145.0	1.1	2.0	1	1	0	1	1	1	1	SOUL	heme-binding	protein
Usp	PF00582.26	gi|336251653|ref|YP_004598884.1|	-	7.7e-31	107.5	0.1	1e-30	107.1	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
zf-C2H2_6	PF13912.6	gi|336251654|ref|YP_004598885.1|	-	0.019	14.9	0.2	0.026	14.5	0.2	1.2	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.6	gi|336251654|ref|YP_004598885.1|	-	0.025	15.4	0.0	0.046	14.6	0.0	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
DUF983	PF06170.12	gi|336251654|ref|YP_004598885.1|	-	5.3	7.5	6.0	19	5.8	0.1	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF2267	PF10025.9	gi|336251655|ref|YP_004598886.1|	-	1.1e-35	122.5	1.1	2.1e-35	121.6	0.6	1.5	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2267)
Usp	PF00582.26	gi|336251656|ref|YP_004598887.1|	-	9e-53	178.6	10.9	2.9e-30	105.6	1.3	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
Phycobilisome	PF00502.19	gi|336251656|ref|YP_004598887.1|	-	0.043	13.8	0.2	0.12	12.3	0.0	1.7	2	0	0	2	2	2	0	Phycobilisome	protein
DUF1427	PF07235.11	gi|336251657|ref|YP_004598888.1|	-	0.034	14.1	0.1	0.079	12.9	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1427)
Usp	PF00582.26	gi|336251658|ref|YP_004598889.1|	-	1.6e-26	93.5	1.6	2e-26	93.2	1.6	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
GARS_N	PF02844.15	gi|336251658|ref|YP_004598889.1|	-	0.1	13.4	0.0	0.22	12.3	0.0	1.7	1	1	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
TAT_signal	PF10518.9	gi|336251659|ref|YP_004598890.1|	-	1.8e-05	24.4	0.2	2.5e-05	23.9	0.2	1.2	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NAPRTase_N	PF17767.1	gi|336251660|ref|YP_004598891.1|	-	1.3e-32	112.8	0.0	2.6e-32	111.8	0.0	1.5	1	0	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
NAPRTase	PF04095.16	gi|336251660|ref|YP_004598891.1|	-	8.3e-12	45.2	0.2	2.6e-11	43.6	0.2	1.7	1	1	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	(NAPRTase)	family
NAPRTase_C	PF17956.1	gi|336251660|ref|YP_004598891.1|	-	3.5e-11	43.5	0.0	1.2e-09	38.6	0.0	2.4	1	1	1	2	2	2	1	Nicotinate	phosphoribosyltransferase	C-terminal	domain
Usp	PF00582.26	gi|336251661|ref|YP_004598892.1|	-	5.8e-28	98.2	0.2	7.5e-28	97.8	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
CBS	PF00571.28	gi|336251662|ref|YP_004598893.1|	-	4.9e-24	84.5	4.3	1.6e-11	44.5	1.5	2.2	2	0	0	2	2	2	2	CBS	domain
YdjM	PF04307.14	gi|336251663|ref|YP_004598894.1|	-	4.1e-05	23.0	17.6	0.00082	18.7	17.6	2.3	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Insulin_TMD	PF17870.1	gi|336251663|ref|YP_004598894.1|	-	0.0079	16.2	1.3	0.023	14.8	1.3	1.8	1	0	0	1	1	1	1	Insulin	receptor	trans-membrane	segment
Pyridox_ox_2	PF12900.7	gi|336251664|ref|YP_004598895.1|	-	2.6e-20	72.8	0.0	3.1e-20	72.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|336251664|ref|YP_004598895.1|	-	7.1e-05	22.9	0.0	9.5e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|336251665|ref|YP_004598896.1|	-	1.7e-17	63.8	0.0	1.9e-17	63.6	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Sulfatase	PF00884.23	gi|336251666|ref|YP_004598897.1|	-	4.7e-40	137.9	0.0	6.6e-40	137.4	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
DUF4976	PF16347.5	gi|336251666|ref|YP_004598897.1|	-	1.5e-08	34.8	1.7	6e-05	23.2	0.6	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4976)
Phosphodiest	PF01663.22	gi|336251666|ref|YP_004598897.1|	-	1e-07	31.9	0.3	1.5e-06	28.1	0.3	2.2	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
NTP_transferase	PF00483.23	gi|336251667|ref|YP_004598898.1|	-	3.4e-32	112.0	0.0	4.2e-32	111.7	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336251667|ref|YP_004598898.1|	-	1.1e-13	51.8	0.0	1.5e-13	51.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|336251667|ref|YP_004598898.1|	-	0.093	12.5	0.3	1.2	8.9	0.2	2.6	2	1	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
Usp	PF00582.26	gi|336251668|ref|YP_004598899.1|	-	2.2e-60	203.3	1.9	3.6e-30	105.3	1.4	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
E3_binding	PF02817.17	gi|336251668|ref|YP_004598899.1|	-	0.041	14.2	0.4	13	6.2	0.1	4.0	4	0	0	4	4	4	0	e3	binding	domain
Glycos_transf_1	PF00534.20	gi|336251669|ref|YP_004598900.1|	-	2.6e-30	105.2	0.0	3.9e-30	104.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251669|ref|YP_004598900.1|	-	3.4e-16	59.9	0.0	6.5e-16	59.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|336251669|ref|YP_004598900.1|	-	3.3e-07	30.6	0.0	8.4e-07	29.3	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Usp	PF00582.26	gi|336251670|ref|YP_004598901.1|	-	3.2e-31	108.7	1.4	3.5e-31	108.6	1.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|336251670|ref|YP_004598901.1|	-	0.00044	19.8	1.3	0.0006	19.3	1.1	1.3	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
CobU	PF02283.16	gi|336251670|ref|YP_004598901.1|	-	0.034	13.7	0.0	0.048	13.2	0.0	1.3	1	0	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Dodecin	PF07311.12	gi|336251670|ref|YP_004598901.1|	-	0.087	13.1	2.1	0.4	11.0	0.0	2.3	2	0	0	2	2	2	0	Dodecin
Usp	PF00582.26	gi|336251671|ref|YP_004598902.1|	-	5.1e-62	208.5	7.7	3.8e-32	111.7	1.1	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|336251671|ref|YP_004598902.1|	-	0.065	13.2	0.5	4.6	7.2	0.0	2.8	2	1	0	2	2	2	0	DNA	photolyase
Fe-ADH	PF00465.19	gi|336251672|ref|YP_004598903.1|	-	2.7e-63	214.0	6.6	3.1e-63	213.8	6.6	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|336251672|ref|YP_004598903.1|	-	2.4e-34	119.2	0.5	3.1e-34	118.8	0.5	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|336251672|ref|YP_004598903.1|	-	0.00015	21.1	3.7	0.00057	19.1	3.7	1.9	1	1	0	1	1	1	1	3-dehydroquinate	synthase
SpoVS	PF04232.12	gi|336251672|ref|YP_004598903.1|	-	0.096	12.4	0.1	0.31	10.8	0.1	1.8	2	0	0	2	2	2	0	Stage	V	sporulation	protein	S	(SpoVS)
PUB	PF09409.10	gi|336251672|ref|YP_004598903.1|	-	0.2	11.6	0.0	0.94	9.4	0.0	1.9	2	0	0	2	2	2	0	PUB	domain
AP_endonuc_2	PF01261.24	gi|336251674|ref|YP_004598905.1|	-	4e-21	75.4	1.4	6e-21	74.9	1.4	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.26	gi|336251676|ref|YP_004598907.1|	-	3.5e-35	121.6	2.8	3.9e-35	121.4	2.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|336251676|ref|YP_004598907.1|	-	0.049	13.1	0.1	0.45	9.9	0.1	1.9	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
NTP_transf_2	PF01909.23	gi|336251676|ref|YP_004598907.1|	-	0.081	13.2	1.8	6.5	7.1	0.5	2.4	1	1	1	2	2	2	0	Nucleotidyltransferase	domain
Usp	PF00582.26	gi|336251677|ref|YP_004598908.1|	-	9.2e-71	236.9	7.6	5e-36	124.3	1.3	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DXP_reductoisom	PF02670.16	gi|336251677|ref|YP_004598908.1|	-	0.021	15.5	0.2	2	9.2	0.0	2.3	2	0	0	2	2	2	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Lactamase_B_4	PF13691.6	gi|336251677|ref|YP_004598908.1|	-	0.052	13.2	0.0	16	5.3	0.0	2.4	2	0	0	2	2	2	0	tRNase	Z	endonuclease
Usp	PF00582.26	gi|336251678|ref|YP_004598909.1|	-	1.2e-07	32.3	1.0	2e-07	31.6	1.0	1.4	1	1	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.26	gi|336251679|ref|YP_004598910.1|	-	6e-34	117.6	0.2	6.7e-34	117.4	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
YaeQ	PF07152.12	gi|336251679|ref|YP_004598910.1|	-	0.16	11.6	0.0	0.19	11.3	0.0	1.1	1	0	0	1	1	1	0	YaeQ	protein
Usp	PF00582.26	gi|336251680|ref|YP_004598911.1|	-	1.9e-27	96.5	0.4	2.2e-27	96.3	0.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2267	PF10025.9	gi|336251681|ref|YP_004598912.1|	-	2.8e-35	121.3	0.3	3.1e-35	121.1	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Usp	PF00582.26	gi|336251682|ref|YP_004598913.1|	-	4.1e-67	225.1	5.6	8.7e-34	117.0	1.0	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
ArsD	PF06953.11	gi|336251682|ref|YP_004598913.1|	-	0.18	12.1	0.0	0.38	11.1	0.0	1.4	1	0	0	1	1	1	0	Arsenical	resistance	operon	trans-acting	repressor	ArsD
MFS_1	PF07690.16	gi|336251683|ref|YP_004598914.1|	-	4.8e-37	127.7	40.0	2.5e-19	69.4	18.1	2.0	1	1	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|336251683|ref|YP_004598914.1|	-	2e-08	33.5	17.0	0.0016	17.4	3.5	3.7	3	1	1	4	4	4	3	MFS_1	like	family
Rhodanese	PF00581.20	gi|336251684|ref|YP_004598915.1|	-	8.8e-15	55.2	0.0	2.1e-14	53.9	0.0	1.7	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B	PF00753.27	gi|336251684|ref|YP_004598915.1|	-	1e-12	48.5	6.6	4.2e-12	46.5	6.6	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|336251684|ref|YP_004598915.1|	-	0.0023	17.5	1.1	0.0096	15.5	0.3	2.2	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
HTH_10	PF04967.12	gi|336251685|ref|YP_004598916.1|	-	2.1e-21	75.5	0.5	3.4e-21	74.8	0.5	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|336251685|ref|YP_004598916.1|	-	0.0061	16.7	0.1	0.011	15.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
Polyketide_cyc2	PF10604.9	gi|336251686|ref|YP_004598917.1|	-	2.4	8.4	8.2	1.6	9.0	2.3	3.1	3	2	1	4	4	4	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
VIT1	PF01988.19	gi|336251687|ref|YP_004598918.1|	-	8e-10	38.9	2.1	8e-10	38.9	2.1	2.1	2	0	0	2	2	2	1	VIT	family
BTP	PF05232.12	gi|336251687|ref|YP_004598918.1|	-	5.9	7.0	6.2	2.5	8.2	0.0	2.7	2	1	1	3	3	3	0	Chlorhexidine	efflux	transporter
DUF211	PF02680.14	gi|336251688|ref|YP_004598919.1|	-	6.4e-34	116.0	0.9	7.1e-34	115.8	0.9	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
E1-E2_ATPase	PF00122.20	gi|336251690|ref|YP_004598921.1|	-	7.2e-57	191.8	3.1	7.2e-57	191.8	3.1	3.4	4	0	0	4	4	4	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|336251690|ref|YP_004598921.1|	-	8.5e-40	136.4	2.9	1.8e-39	135.3	2.9	1.5	1	0	0	1	1	1	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|336251690|ref|YP_004598921.1|	-	1.2e-26	94.3	1.2	2.8e-26	93.1	1.2	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|336251690|ref|YP_004598921.1|	-	1.1e-18	67.1	0.0	2.5e-18	66.0	0.0	1.6	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|336251690|ref|YP_004598921.1|	-	7.9e-17	60.7	0.0	1.7e-16	59.7	0.0	1.6	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|336251690|ref|YP_004598921.1|	-	4.7e-05	23.2	0.7	0.0012	18.7	0.2	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336251690|ref|YP_004598921.1|	-	0.00012	22.6	0.6	0.00051	20.5	0.1	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.20	gi|336251691|ref|YP_004598922.1|	-	2.7e-48	163.9	1.8	2.7e-48	163.9	1.8	3.0	3	0	0	3	3	3	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|336251691|ref|YP_004598922.1|	-	3.4e-38	131.2	7.2	3.4e-38	131.2	7.2	2.1	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|336251691|ref|YP_004598922.1|	-	2.1e-23	83.7	4.6	5.3e-23	82.4	4.6	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|336251691|ref|YP_004598922.1|	-	2.3e-17	62.4	0.0	6.2e-17	61.1	0.0	1.8	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|336251691|ref|YP_004598922.1|	-	1e-16	60.8	0.0	2.3e-16	59.6	0.0	1.6	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|336251691|ref|YP_004598922.1|	-	1.9e-08	34.4	0.3	5.8e-05	23.0	0.7	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336251691|ref|YP_004598922.1|	-	0.011	16.2	0.4	0.024	15.1	0.3	1.7	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
TrbC	PF04956.13	gi|336251691|ref|YP_004598922.1|	-	0.43	10.8	0.0	0.43	10.8	0.0	3.9	4	1	0	4	4	4	0	TrbC/VIRB2	family
Trp_oprn_chp	PF09534.10	gi|336251691|ref|YP_004598922.1|	-	9.2	6.0	9.6	4.7	7.0	3.6	3.0	3	0	0	3	3	3	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
CBS	PF00571.28	gi|336251692|ref|YP_004598923.1|	-	5.3e-25	87.6	2.7	2e-12	47.4	0.9	2.6	2	0	0	2	2	2	2	CBS	domain
MaoC_dehydratas	PF01575.19	gi|336251692|ref|YP_004598923.1|	-	1.8e-20	72.7	0.0	4.7e-20	71.4	0.0	1.7	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|336251692|ref|YP_004598923.1|	-	1.9e-07	31.2	0.0	4.8e-07	30.0	0.0	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|336251692|ref|YP_004598923.1|	-	0.0048	17.2	0.2	0.11	12.9	0.0	2.8	3	0	0	3	3	3	1	Thioesterase	superfamily
tRNA_anti-codon	PF01336.25	gi|336251692|ref|YP_004598923.1|	-	0.043	13.8	0.2	1.7	8.7	0.0	3.0	3	0	0	3	3	3	0	OB-fold	nucleic	acid	binding	domain
TruB_C	PF09142.11	gi|336251692|ref|YP_004598923.1|	-	0.087	12.6	0.0	1.3	8.8	0.0	2.9	3	0	0	3	3	3	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Pyridox_ox_2	PF12900.7	gi|336251693|ref|YP_004598924.1|	-	7.4e-19	68.1	0.0	8.4e-19	68.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|336251693|ref|YP_004598924.1|	-	0.021	15.0	0.0	0.026	14.7	0.0	1.1	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.26	gi|336251694|ref|YP_004598925.1|	-	1.4e-28	100.1	0.1	3.7e-28	98.8	0.1	1.6	1	1	0	1	1	1	1	Universal	stress	protein	family
Flavodoxin_5	PF12724.7	gi|336251695|ref|YP_004598926.1|	-	8.9e-39	133.0	0.0	1.2e-38	132.6	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|336251695|ref|YP_004598926.1|	-	3.7e-05	24.0	0.1	6.6e-05	23.1	0.1	1.5	1	0	0	1	1	1	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|336251695|ref|YP_004598926.1|	-	0.0044	16.7	0.0	0.0086	15.8	0.0	1.5	1	1	0	1	1	1	1	Flavodoxin	domain
RICTOR_V	PF14668.6	gi|336251695|ref|YP_004598926.1|	-	0.028	14.6	0.0	0.055	13.7	0.0	1.4	1	0	0	1	1	1	0	Rapamycin-insensitive	companion	of	mTOR,	domain	5
PTS_IIB	PF02302.17	gi|336251695|ref|YP_004598926.1|	-	0.087	13.5	0.1	0.25	12.1	0.0	1.8	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
BAT	PF15915.5	gi|336251696|ref|YP_004598927.1|	-	9.5e-35	119.8	6.9	9.5e-35	119.8	6.9	3.3	3	1	1	4	4	4	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|336251696|ref|YP_004598927.1|	-	4.4e-21	74.4	0.0	6.2e-19	67.5	0.0	2.6	2	0	0	2	2	2	1	HTH	DNA	binding	domain
GAF_2	PF13185.6	gi|336251696|ref|YP_004598927.1|	-	1.2e-19	71.0	0.7	2.9e-19	69.7	0.2	2.0	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.25	gi|336251696|ref|YP_004598927.1|	-	1.6e-10	40.9	1.0	3.2e-10	40.0	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
GAF	PF01590.26	gi|336251696|ref|YP_004598927.1|	-	3e-10	40.9	0.0	8.6e-10	39.4	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|336251696|ref|YP_004598927.1|	-	7.4e-09	35.8	1.0	7.4e-09	35.8	1.0	2.5	3	0	0	3	3	2	1	PAS	fold
PAS_9	PF13426.7	gi|336251696|ref|YP_004598927.1|	-	1.1e-08	35.3	0.0	2.7e-08	34.0	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
GAF_3	PF13492.6	gi|336251696|ref|YP_004598927.1|	-	1.4e-06	28.7	0.0	7.9e-06	26.2	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
MarR_2	PF12802.7	gi|336251696|ref|YP_004598927.1|	-	0.00042	20.1	1.0	0.94	9.4	0.0	3.2	3	0	0	3	3	3	2	MarR	family
Sigma70_r4	PF04545.16	gi|336251696|ref|YP_004598927.1|	-	0.001	18.6	1.8	0.12	11.9	0.0	3.5	5	0	0	5	5	5	1	Sigma-70,	region	4
PAS_10	PF13596.6	gi|336251696|ref|YP_004598927.1|	-	0.004	17.7	0.0	0.041	14.5	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
HTH_20	PF12840.7	gi|336251696|ref|YP_004598927.1|	-	0.0063	16.6	2.0	0.042	13.9	0.5	2.8	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251696|ref|YP_004598927.1|	-	0.009	15.6	0.0	0.71	9.5	0.0	2.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|336251696|ref|YP_004598927.1|	-	0.046	13.9	0.0	2.4	8.4	0.0	2.6	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|336251696|ref|YP_004598927.1|	-	0.052	13.4	0.0	0.18	11.7	0.0	1.9	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PAS_7	PF12860.7	gi|336251696|ref|YP_004598927.1|	-	0.065	13.4	0.0	0.24	11.6	0.0	2.0	1	0	0	1	1	1	0	PAS	fold
Aminotran_5	PF00266.19	gi|336251698|ref|YP_004598929.1|	-	1.8e-54	185.1	0.0	3e-54	184.4	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|336251698|ref|YP_004598929.1|	-	0.00017	20.9	0.0	0.00067	18.9	0.0	1.9	2	1	0	2	2	2	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|336251698|ref|YP_004598929.1|	-	0.0011	18.4	0.2	0.0016	17.9	0.2	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Methyltransf_31	PF13847.6	gi|336251699|ref|YP_004598930.1|	-	4.2e-13	49.4	0.0	4.9e-13	49.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336251699|ref|YP_004598930.1|	-	3.2e-12	46.9	0.0	4.2e-12	46.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336251699|ref|YP_004598930.1|	-	4.6e-12	46.5	0.0	6.2e-12	46.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336251699|ref|YP_004598930.1|	-	1.1e-08	35.7	0.0	1.5e-08	35.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|336251699|ref|YP_004598930.1|	-	2.8e-06	27.2	0.0	3.8e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
MTS	PF05175.14	gi|336251699|ref|YP_004598930.1|	-	4.4e-06	26.4	0.0	6.6e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.18	gi|336251699|ref|YP_004598930.1|	-	4.9e-06	26.0	0.0	6e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_4	PF02390.17	gi|336251699|ref|YP_004598930.1|	-	0.00031	20.3	0.0	0.0017	17.9	0.0	1.9	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_32	PF13679.6	gi|336251699|ref|YP_004598930.1|	-	0.0042	17.1	0.0	0.0057	16.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
FmrO	PF07091.11	gi|336251699|ref|YP_004598930.1|	-	0.015	14.9	0.0	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_23	PF13489.6	gi|336251699|ref|YP_004598930.1|	-	0.018	14.9	0.0	0.024	14.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|336251699|ref|YP_004598930.1|	-	0.018	14.2	0.0	0.038	13.1	0.0	1.5	2	0	0	2	2	2	0	Fibrillarin
PCMT	PF01135.19	gi|336251699|ref|YP_004598930.1|	-	0.02	14.7	0.0	0.029	14.1	0.0	1.3	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.7	gi|336251699|ref|YP_004598930.1|	-	0.18	11.7	0.0	0.27	11.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|336251699|ref|YP_004598930.1|	-	0.25	10.6	0.0	0.35	10.1	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF2892	PF11127.8	gi|336251700|ref|YP_004598931.1|	-	4.1e-12	45.9	3.7	4.7e-12	45.8	3.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
Form-deh_trans	PF09163.11	gi|336251700|ref|YP_004598931.1|	-	2.6	7.9	6.0	0.52	10.1	1.3	2.0	1	1	1	2	2	2	0	Formate	dehydrogenase	N,	transmembrane
Peptidase_M20	PF01546.28	gi|336251701|ref|YP_004598932.1|	-	3.7e-36	124.8	0.2	4.8e-36	124.4	0.2	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336251701|ref|YP_004598932.1|	-	1.3e-16	60.4	0.0	4.7e-16	58.7	0.0	1.9	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|336251701|ref|YP_004598932.1|	-	1.2e-09	38.1	0.0	1.8e-08	34.3	0.0	2.1	2	0	0	2	2	2	1	Peptidase	family	M28
Peptidase_M42	PF05343.14	gi|336251701|ref|YP_004598932.1|	-	0.0075	15.3	0.0	0.66	8.9	0.0	2.4	3	0	0	3	3	3	2	M42	glutamyl	aminopeptidase
Pyr_redox_2	PF07992.14	gi|336251702|ref|YP_004598933.1|	-	2e-63	214.4	4.1	2.6e-63	214.0	4.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336251702|ref|YP_004598933.1|	-	1.2e-21	77.1	4.9	4.1e-18	65.7	0.3	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|336251702|ref|YP_004598933.1|	-	4.9e-16	59.0	0.1	5.1e-15	55.7	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|336251702|ref|YP_004598933.1|	-	4.6e-10	39.2	0.3	5.3e-06	25.9	0.1	2.9	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336251702|ref|YP_004598933.1|	-	1.7e-09	36.9	0.4	0.031	13.0	0.0	4.1	3	1	1	4	4	4	4	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|336251702|ref|YP_004598933.1|	-	2.8e-09	37.1	0.1	0.002	18.3	0.0	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336251702|ref|YP_004598933.1|	-	3.4e-07	30.2	6.0	0.61	9.6	0.3	4.3	4	0	0	4	4	4	3	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|336251702|ref|YP_004598933.1|	-	0.00011	21.6	1.3	0.055	12.7	0.1	3.0	3	1	0	3	3	3	2	Flavin	containing	amine	oxidoreductase
NAD_binding_7	PF13241.6	gi|336251702|ref|YP_004598933.1|	-	0.0045	17.4	0.5	1.1	9.8	0.1	2.7	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.7	gi|336251702|ref|YP_004598933.1|	-	0.0049	16.3	8.0	0.14	11.5	0.0	2.9	3	1	0	4	4	4	2	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|336251702|ref|YP_004598933.1|	-	0.0052	16.7	0.1	0.012	15.6	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|336251702|ref|YP_004598933.1|	-	0.0085	15.7	0.1	0.02	14.4	0.1	1.7	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_9	PF13454.6	gi|336251702|ref|YP_004598933.1|	-	0.014	15.4	2.3	5.3	7.0	0.0	3.3	3	1	1	4	4	4	0	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|336251702|ref|YP_004598933.1|	-	0.014	14.5	9.7	0.15	11.1	0.1	3.7	1	1	2	3	3	3	0	FAD	binding	domain
GIDA	PF01134.22	gi|336251702|ref|YP_004598933.1|	-	0.029	13.5	4.0	0.5	9.4	0.1	2.7	2	1	0	3	3	3	0	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|336251702|ref|YP_004598933.1|	-	0.059	12.7	7.0	1.2	8.3	0.1	3.9	4	0	0	4	4	4	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.18	gi|336251702|ref|YP_004598933.1|	-	0.079	13.2	0.2	6.5	7.1	0.1	3.0	3	0	0	3	3	3	0	TrkA-N	domain
FAD_binding_3	PF01494.19	gi|336251702|ref|YP_004598933.1|	-	0.13	11.4	2.9	0.12	11.6	0.5	2.1	2	1	0	2	2	2	0	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|336251702|ref|YP_004598933.1|	-	0.89	8.5	4.1	12	4.8	0.0	2.6	3	0	0	3	3	3	0	Lycopene	cyclase	protein
DUF302	PF03625.14	gi|336251704|ref|YP_004598935.1|	-	1.8e-15	56.6	0.0	3.2e-15	55.8	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Methyltransf_11	PF08241.12	gi|336251705|ref|YP_004598936.1|	-	1e-20	74.1	0.0	1.6e-20	73.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336251705|ref|YP_004598936.1|	-	2.1e-17	63.6	0.0	3.9e-17	62.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336251705|ref|YP_004598936.1|	-	3.1e-11	43.3	0.0	3.8e-11	43.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|336251705|ref|YP_004598936.1|	-	1.9e-07	31.1	0.0	8.8e-07	28.9	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336251705|ref|YP_004598936.1|	-	1.6e-06	27.7	0.0	2.4e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336251705|ref|YP_004598936.1|	-	1.6e-06	28.8	0.0	2.4e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|336251705|ref|YP_004598936.1|	-	6.5e-05	23.1	0.0	8e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
RrnaAD	PF00398.20	gi|336251705|ref|YP_004598936.1|	-	9.8e-05	21.5	0.0	0.00012	21.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
DREV	PF05219.12	gi|336251705|ref|YP_004598936.1|	-	0.00019	20.7	0.0	0.00029	20.0	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_8	PF05148.15	gi|336251705|ref|YP_004598936.1|	-	0.00041	20.3	0.0	0.00094	19.1	0.0	1.7	1	1	0	1	1	1	1	Hypothetical	methyltransferase
MTS	PF05175.14	gi|336251705|ref|YP_004598936.1|	-	0.015	14.9	0.0	0.063	12.8	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	small	domain
DUF5131	PF07505.11	gi|336251705|ref|YP_004598936.1|	-	0.047	13.1	0.0	0.29	10.5	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF5131)
Methyltransf_2	PF00891.18	gi|336251705|ref|YP_004598936.1|	-	0.054	12.8	0.0	0.077	12.3	0.0	1.3	1	1	0	1	1	1	0	O-methyltransferase	domain
ADH_zinc_N_2	PF13602.6	gi|336251705|ref|YP_004598936.1|	-	0.087	13.9	0.1	7.1	7.7	0.0	2.4	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Methyltransf_32	PF13679.6	gi|336251705|ref|YP_004598936.1|	-	0.096	12.7	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
ADH_zinc_N	PF00107.26	gi|336251705|ref|YP_004598936.1|	-	0.14	12.2	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Cu-oxidase_3	PF07732.15	gi|336251706|ref|YP_004598937.1|	-	5e-42	142.7	0.0	1.2e-31	109.2	0.0	3.2	3	0	0	3	3	3	3	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|336251706|ref|YP_004598937.1|	-	1e-32	112.8	2.6	1.2e-23	83.4	2.7	4.9	3	2	0	3	3	3	3	Multicopper	oxidase
Cu-oxidase	PF00394.22	gi|336251706|ref|YP_004598937.1|	-	3.7e-21	75.9	0.0	8e-20	71.6	0.0	2.4	2	0	0	2	2	2	1	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|336251706|ref|YP_004598937.1|	-	0.00079	19.5	0.0	0.16	12.1	0.0	2.8	3	0	0	3	3	3	1	Cupredoxin-like	domain
Peptidase_A4	PF01828.17	gi|336251706|ref|YP_004598937.1|	-	0.17	11.3	0.0	11	5.4	0.0	2.5	2	0	0	2	2	2	0	Peptidase	A4	family
DUF2243	PF10002.9	gi|336251707|ref|YP_004598938.1|	-	4.2e-51	172.7	10.3	5e-51	172.5	10.3	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2243)
HisKA_7TM	PF16927.5	gi|336251707|ref|YP_004598938.1|	-	0.24	11.4	2.9	0.36	10.8	2.9	1.4	1	1	0	1	1	1	0	N-terminal	7TM	region	of	histidine	kinase
Thioredoxin_4	PF13462.6	gi|336251708|ref|YP_004598939.1|	-	5.6e-26	91.7	0.0	6.6e-26	91.4	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336251708|ref|YP_004598939.1|	-	9.8e-13	48.5	0.1	2.1e-12	47.5	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|336251708|ref|YP_004598939.1|	-	9.9e-13	48.3	0.3	1.2e-07	31.7	0.0	2.1	1	1	1	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_5	PF13743.6	gi|336251708|ref|YP_004598939.1|	-	0.00037	20.2	0.0	0.00062	19.5	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
DUF2631	PF10939.8	gi|336251708|ref|YP_004598939.1|	-	0.049	13.5	0.1	0.095	12.6	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2631)
UCR_Fe-S_N	PF10399.9	gi|336251708|ref|YP_004598939.1|	-	0.074	12.4	0.1	0.2	11.1	0.1	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Thioredoxin	PF00085.20	gi|336251708|ref|YP_004598939.1|	-	0.12	12.4	0.0	0.31	11.0	0.0	1.7	2	0	0	2	2	2	0	Thioredoxin
5_nucleotid_C	PF02872.18	gi|336251709|ref|YP_004598940.1|	-	1.3e-16	61.2	0.0	2.4e-16	60.3	0.0	1.4	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.28	gi|336251709|ref|YP_004598940.1|	-	1e-06	29.4	0.5	1.7e-06	28.7	0.5	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Glyco_transf_4	PF13439.6	gi|336251709|ref|YP_004598940.1|	-	0.015	15.3	0.0	0.07	13.1	0.0	1.8	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
Cu-oxidase_2	PF07731.14	gi|336251710|ref|YP_004598941.1|	-	5.4e-21	74.8	0.9	5.4e-21	74.8	0.9	2.1	2	1	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_3	PF07732.15	gi|336251710|ref|YP_004598941.1|	-	3.8e-13	49.5	2.3	1.3e-06	28.4	0.0	3.4	2	1	1	3	3	3	2	Multicopper	oxidase
Cu-oxidase	PF00394.22	gi|336251710|ref|YP_004598941.1|	-	0.024	14.7	0.0	0.32	11.1	0.0	2.4	1	1	0	1	1	1	0	Multicopper	oxidase
DUF4332	PF14229.6	gi|336251710|ref|YP_004598941.1|	-	0.075	13.3	0.1	0.13	12.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
Response_reg	PF00072.24	gi|336251713|ref|YP_004598944.1|	-	1.9e-13	50.6	0.0	2.5e-13	50.2	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
TrmB	PF01978.19	gi|336251714|ref|YP_004598945.1|	-	2.1e-06	27.5	0.0	3.1e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336251714|ref|YP_004598945.1|	-	2.5e-06	27.4	0.1	4.7e-06	26.6	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251714|ref|YP_004598945.1|	-	5.9e-05	22.5	0.0	0.00011	21.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|336251714|ref|YP_004598945.1|	-	0.00011	22.1	0.0	0.0002	21.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
FUR	PF01475.19	gi|336251714|ref|YP_004598945.1|	-	0.00012	22.2	0.0	0.00015	21.9	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
MarR_2	PF12802.7	gi|336251714|ref|YP_004598945.1|	-	0.0014	18.4	0.1	0.0024	17.7	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|336251714|ref|YP_004598945.1|	-	0.0033	17.2	0.0	0.0056	16.4	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|336251714|ref|YP_004598945.1|	-	0.0046	16.9	0.0	0.0097	15.9	0.0	1.5	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
US6	PF17616.2	gi|336251714|ref|YP_004598945.1|	-	0.0067	16.4	0.0	0.0087	16.0	0.0	1.1	1	0	0	1	1	1	1	Viral	unique	short	region	6
HTH_AsnC-type	PF13404.6	gi|336251714|ref|YP_004598945.1|	-	0.013	15.3	0.1	0.023	14.5	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF2250	PF10007.9	gi|336251714|ref|YP_004598945.1|	-	0.016	15.3	0.0	0.021	14.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
ArsR	PF09824.9	gi|336251714|ref|YP_004598945.1|	-	0.025	14.2	0.0	0.032	13.8	0.0	1.2	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
HTH_5	PF01022.20	gi|336251714|ref|YP_004598945.1|	-	0.032	14.1	0.0	0.054	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF5063	PF16702.5	gi|336251714|ref|YP_004598945.1|	-	0.064	13.6	0.1	0.079	13.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5063)
SCO1-SenC	PF02630.14	gi|336251716|ref|YP_004598947.1|	-	4.1e-19	68.8	0.0	6.2e-19	68.2	0.0	1.2	1	0	0	1	1	1	1	SCO1/SenC
AhpC-TSA	PF00578.21	gi|336251716|ref|YP_004598947.1|	-	0.00055	19.9	0.0	0.00091	19.1	0.0	1.4	1	1	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336251716|ref|YP_004598947.1|	-	0.011	15.4	0.0	0.019	14.7	0.0	1.5	2	0	0	2	2	2	0	Redoxin
TauE	PF01925.19	gi|336251717|ref|YP_004598948.1|	-	1.9e-16	60.4	31.6	1.9e-16	60.4	31.6	1.5	2	0	0	2	2	2	1	Sulfite	exporter	TauE/SafE
DUF4651	PF15513.6	gi|336251717|ref|YP_004598948.1|	-	0.13	12.1	0.0	0.31	10.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4651)
Thioredoxin	PF00085.20	gi|336251718|ref|YP_004598949.1|	-	3.3e-14	52.7	0.0	3.9e-14	52.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
TraF	PF13728.6	gi|336251718|ref|YP_004598949.1|	-	0.00017	21.5	0.0	0.0002	21.2	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|336251718|ref|YP_004598949.1|	-	0.00032	20.7	0.0	0.00042	20.3	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_2	PF13098.6	gi|336251718|ref|YP_004598949.1|	-	0.00048	20.6	0.0	0.0099	16.3	0.0	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
TrbC_Ftype	PF09673.10	gi|336251718|ref|YP_004598949.1|	-	0.013	15.5	0.0	0.015	15.3	0.0	1.1	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
OST3_OST6	PF04756.13	gi|336251718|ref|YP_004598949.1|	-	0.016	14.5	0.0	0.022	14.1	0.0	1.2	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
Thioredoxin_8	PF13905.6	gi|336251718|ref|YP_004598949.1|	-	0.056	13.8	0.0	0.71	10.2	0.0	2.0	1	1	1	2	2	2	0	Thioredoxin-like
DUF836	PF05768.14	gi|336251718|ref|YP_004598949.1|	-	0.12	12.8	0.0	0.15	12.5	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
HyaE	PF07449.11	gi|336251718|ref|YP_004598949.1|	-	0.12	12.3	0.0	0.19	11.7	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_4	PF13462.6	gi|336251718|ref|YP_004598949.1|	-	0.19	11.9	0.0	5.4	7.2	0.0	2.1	1	1	0	2	2	2	0	Thioredoxin
Pyr_redox_2	PF07992.14	gi|336251719|ref|YP_004598950.1|	-	3.8e-50	170.8	0.5	5.4e-50	170.3	0.5	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|336251719|ref|YP_004598950.1|	-	1.8e-24	86.1	0.2	3.2e-24	85.3	0.2	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|336251719|ref|YP_004598950.1|	-	6.1e-18	65.2	0.2	1.4e-14	54.4	0.0	3.1	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336251719|ref|YP_004598950.1|	-	6.6e-08	32.2	0.1	6.7e-05	22.3	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|336251719|ref|YP_004598950.1|	-	4.4e-05	22.8	0.0	0.00012	21.4	0.0	1.7	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.24	gi|336251719|ref|YP_004598950.1|	-	0.0036	16.5	3.3	0.0036	16.4	1.7	1.8	2	0	0	2	2	2	1	FAD	binding	domain
3HCDH_N	PF02737.18	gi|336251719|ref|YP_004598950.1|	-	0.013	15.3	0.2	0.65	9.9	0.0	2.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|336251719|ref|YP_004598950.1|	-	0.028	14.8	0.0	0.2	12.1	0.0	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
DUF4262	PF14081.6	gi|336251719|ref|YP_004598950.1|	-	0.056	13.7	0.1	0.21	11.8	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4262)
XdhC_C	PF13478.6	gi|336251719|ref|YP_004598950.1|	-	0.068	13.7	0.1	0.17	12.4	0.0	1.8	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Bac_transf	PF02397.16	gi|336251719|ref|YP_004598950.1|	-	0.14	11.8	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	sugar	transferase
Zip	PF02535.22	gi|336251720|ref|YP_004598951.1|	-	6.8e-14	51.8	20.2	1.1e-11	44.5	20.3	2.9	1	1	0	1	1	1	1	ZIP	Zinc	transporter
TrmB	PF01978.19	gi|336251721|ref|YP_004598952.1|	-	4.5e-16	58.5	0.0	6.2e-16	58.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|336251721|ref|YP_004598952.1|	-	8.8e-05	22.8	0.1	0.00012	22.4	0.1	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_IclR	PF09339.10	gi|336251721|ref|YP_004598952.1|	-	0.00017	21.3	0.0	0.00033	20.4	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251721|ref|YP_004598952.1|	-	0.00025	20.9	0.0	0.00044	20.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|336251721|ref|YP_004598952.1|	-	0.00031	20.6	0.5	0.00062	19.6	0.1	1.7	2	0	0	2	2	1	1	MarR	family
HTH_24	PF13412.6	gi|336251721|ref|YP_004598952.1|	-	0.0017	17.9	0.0	0.0027	17.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336251721|ref|YP_004598952.1|	-	0.012	15.6	0.0	0.022	14.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
2OG-Fe_Oxy_2	PF10014.9	gi|336251721|ref|YP_004598952.1|	-	0.013	15.4	0.3	0.016	15.0	0.3	1.2	1	0	0	1	1	1	0	2OG-Fe	dioxygenase
UMPH-1	PF05822.12	gi|336251721|ref|YP_004598952.1|	-	0.024	14.1	0.2	0.034	13.7	0.2	1.3	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_23	PF13384.6	gi|336251721|ref|YP_004598952.1|	-	0.046	13.5	0.0	0.079	12.8	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.7	gi|336251721|ref|YP_004598952.1|	-	0.049	13.5	0.0	0.08	12.8	0.0	1.4	1	0	0	1	1	1	0	MarR	family
RuvB_C	PF05491.13	gi|336251721|ref|YP_004598952.1|	-	0.05	13.5	0.0	0.09	12.7	0.0	1.4	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
HTH_27	PF13463.6	gi|336251721|ref|YP_004598952.1|	-	0.058	13.9	0.0	0.098	13.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|336251721|ref|YP_004598952.1|	-	0.066	13.6	0.0	0.2	12.0	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
DUF4423	PF14394.6	gi|336251721|ref|YP_004598952.1|	-	0.08	12.7	0.1	0.21	11.3	0.0	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
TFIIE_alpha	PF02002.17	gi|336251721|ref|YP_004598952.1|	-	0.088	12.7	0.4	0.13	12.1	0.4	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Rio2_N	PF09202.11	gi|336251721|ref|YP_004598952.1|	-	0.094	12.9	0.2	0.21	11.8	0.2	1.6	1	1	0	1	1	1	0	Rio2,	N-terminal
HTH_28	PF13518.6	gi|336251721|ref|YP_004598952.1|	-	0.16	12.1	0.0	0.32	11.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TauE	PF01925.19	gi|336251722|ref|YP_004598953.1|	-	8.7e-39	133.6	31.9	8.7e-39	133.6	31.9	1.7	2	0	0	2	2	2	1	Sulfite	exporter	TauE/SafE
Usp	PF00582.26	gi|336251724|ref|YP_004598955.1|	-	6.3e-42	143.4	1.8	2.5e-24	86.4	0.1	2.2	2	0	0	2	2	2	2	Universal	stress	protein	family
Ion_trans_2	PF07885.16	gi|336251726|ref|YP_004598957.1|	-	1.4e-07	31.4	7.8	1.4e-07	31.4	7.8	2.2	2	1	1	3	3	3	1	Ion	channel
SLATT_1	PF18181.1	gi|336251726|ref|YP_004598957.1|	-	1.3	8.9	3.5	2.1	8.3	0.1	2.4	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
SHOCT	PF09851.9	gi|336251727|ref|YP_004598958.1|	-	5.1e-08	32.4	5.7	7.6e-08	31.8	5.7	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|336251727|ref|YP_004598958.1|	-	3.2e-05	23.9	1.9	4.2e-05	23.5	1.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Phage_holin_3_6	PF07332.11	gi|336251727|ref|YP_004598958.1|	-	0.0028	17.7	4.6	0.004	17.2	4.6	1.2	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Virul_fac_BrkB	PF03631.15	gi|336251727|ref|YP_004598958.1|	-	0.013	15.1	3.1	0.016	14.8	3.1	1.0	1	0	0	1	1	1	0	Virulence	factor	BrkB
DUF4381	PF14316.6	gi|336251727|ref|YP_004598958.1|	-	0.018	15.3	0.1	0.018	15.3	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
TMEM251	PF15190.6	gi|336251727|ref|YP_004598958.1|	-	0.045	13.7	1.8	0.17	11.8	0.0	2.0	2	0	0	2	2	2	0	Transmembrane	protein	251
TMEM208_SND2	PF05620.11	gi|336251727|ref|YP_004598958.1|	-	0.16	11.7	2.4	0.63	9.8	0.0	2.0	1	1	1	2	2	2	0	SRP-independent	targeting	protein	2/TMEM208
DUF2207	PF09972.9	gi|336251727|ref|YP_004598958.1|	-	0.66	8.7	2.1	0.8	8.4	2.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Tad	PF13400.6	gi|336251727|ref|YP_004598958.1|	-	1.9	8.9	10.7	3.9	7.9	0.3	2.6	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
FeoB_associated	PF12669.7	gi|336251727|ref|YP_004598958.1|	-	4.4	7.8	4.1	4.6	7.7	0.0	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
DUF326	PF03860.16	gi|336251728|ref|YP_004598959.1|	-	9.3e-06	25.4	52.0	0.0011	18.9	6.1	4.6	4	1	0	4	4	4	3	Domain	of	Unknown	Function	(DUF326)
DUF2721	PF11026.8	gi|336251729|ref|YP_004598960.1|	-	0.018	14.9	0.0	0.021	14.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
TMEM132D_C	PF15706.5	gi|336251729|ref|YP_004598960.1|	-	0.1	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Mature	oligodendrocyte	transmembrane	protein,	TMEM132D,	C-term
ATG22	PF11700.8	gi|336251729|ref|YP_004598960.1|	-	0.11	11.1	0.0	0.12	11.0	0.0	1.0	1	0	0	1	1	1	0	Vacuole	effluxer	Atg22	like
2TM	PF13239.6	gi|336251729|ref|YP_004598960.1|	-	0.18	12.1	0.1	0.21	11.9	0.1	1.2	1	0	0	1	1	1	0	2TM	domain
DUF1641	PF07849.11	gi|336251730|ref|YP_004598961.1|	-	1.1e-15	57.1	0.6	2.6e-15	56.0	0.6	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Pyr_redox_2	PF07992.14	gi|336251731|ref|YP_004598962.1|	-	4.3e-24	85.3	0.1	4.8e-23	81.8	0.1	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|336251731|ref|YP_004598962.1|	-	1.2e-05	25.4	0.9	0.094	12.7	0.1	2.7	2	1	1	3	3	3	2	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|336251731|ref|YP_004598962.1|	-	0.066	13.8	0.2	21	5.8	0.0	2.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336251731|ref|YP_004598962.1|	-	0.17	10.6	0.0	26	3.4	0.0	2.7	3	0	0	3	3	3	0	HI0933-like	protein
TusA	PF01206.17	gi|336251732|ref|YP_004598963.1|	-	5.6e-18	64.5	0.0	6.1e-18	64.4	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
SHOCT	PF09851.9	gi|336251733|ref|YP_004598964.1|	-	1.3e-09	37.5	5.5	1.7e-09	37.1	5.5	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
VbhA	PF18495.1	gi|336251733|ref|YP_004598964.1|	-	0.00061	19.6	1.3	0.001	18.9	1.3	1.4	1	0	0	1	1	1	1	Antitoxin	VbhA
DUF1707	PF08044.11	gi|336251733|ref|YP_004598964.1|	-	0.00071	19.6	5.2	0.0013	18.8	5.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Phage_holin_3_6	PF07332.11	gi|336251733|ref|YP_004598964.1|	-	0.0023	17.9	0.4	0.0033	17.4	0.4	1.2	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Phage_holin_2_4	PF16082.5	gi|336251733|ref|YP_004598964.1|	-	0.023	14.4	3.8	0.032	14.0	2.5	1.9	1	1	0	1	1	1	0	Bacteriophage	holin	family,	superfamily	II-like
DUF4381	PF14316.6	gi|336251733|ref|YP_004598964.1|	-	0.074	13.3	0.1	0.12	12.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4381)
ACC_epsilon	PF13822.6	gi|336251733|ref|YP_004598964.1|	-	0.5	11.1	4.3	1.7	9.4	0.2	2.3	2	1	0	2	2	2	0	Acyl-CoA	carboxylase	epsilon	subunit
Thioredoxin	PF00085.20	gi|336251734|ref|YP_004598965.1|	-	9.9e-26	89.7	0.0	1.2e-25	89.4	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|336251734|ref|YP_004598965.1|	-	6.2e-08	33.1	0.3	1.2e-06	28.9	0.3	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|336251734|ref|YP_004598965.1|	-	0.00015	21.6	0.4	0.00024	20.9	0.1	1.6	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_7	PF13899.6	gi|336251734|ref|YP_004598965.1|	-	0.00047	20.3	0.9	0.00065	19.8	0.1	1.6	2	0	0	2	2	1	1	Thioredoxin-like
TraF	PF13728.6	gi|336251734|ref|YP_004598965.1|	-	0.00056	19.8	0.0	0.00095	19.0	0.0	1.3	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
AhpC-TSA	PF00578.21	gi|336251734|ref|YP_004598965.1|	-	0.0011	18.9	0.0	0.0014	18.5	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_9	PF14595.6	gi|336251734|ref|YP_004598965.1|	-	0.0011	18.7	0.2	0.0019	18.0	0.2	1.5	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|336251734|ref|YP_004598965.1|	-	0.0031	17.8	0.0	0.18	12.2	0.0	2.2	1	1	1	2	2	2	1	Thioredoxin-like
Glutaredoxin	PF00462.24	gi|336251734|ref|YP_004598965.1|	-	0.0032	17.6	0.1	0.0063	16.7	0.1	1.6	1	0	0	1	1	1	1	Glutaredoxin
Redoxin	PF08534.10	gi|336251734|ref|YP_004598965.1|	-	0.02	14.6	0.0	0.027	14.2	0.0	1.3	1	0	0	1	1	1	0	Redoxin
Thioredoxin_5	PF13743.6	gi|336251734|ref|YP_004598965.1|	-	0.14	11.8	0.0	0.44	10.2	0.0	1.7	1	1	1	2	2	2	0	Thioredoxin
DUF953	PF06110.11	gi|336251734|ref|YP_004598965.1|	-	0.17	11.5	0.4	0.9	9.2	0.3	2.1	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
OST3_OST6	PF04756.13	gi|336251734|ref|YP_004598965.1|	-	0.21	10.9	0.0	0.27	10.6	0.0	1.1	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
DUF1684	PF07920.11	gi|336251735|ref|YP_004598966.1|	-	1.1e-54	184.5	0.1	1.4e-54	184.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
DUF2749	PF10907.8	gi|336251735|ref|YP_004598966.1|	-	0.11	12.6	0.0	0.27	11.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2749)
DUF393	PF04134.12	gi|336251737|ref|YP_004598968.1|	-	1.8e-15	58.2	0.0	2e-15	58.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
PHO4	PF01384.20	gi|336251738|ref|YP_004598969.1|	-	2.3e-43	148.5	30.9	2.3e-43	148.5	30.9	1.5	1	1	0	1	1	1	1	Phosphate	transporter	family
Sulf_transp	PF04143.14	gi|336251739|ref|YP_004598970.1|	-	1.6e-08	34.5	6.2	1.6e-08	34.5	6.2	2.1	1	1	1	2	2	2	2	Sulphur	transport
Sulf_transp	PF04143.14	gi|336251740|ref|YP_004598971.1|	-	9.7e-14	51.6	15.3	1.5e-12	47.8	15.7	1.9	1	1	1	2	2	2	2	Sulphur	transport
Trp_oprn_chp	PF09534.10	gi|336251740|ref|YP_004598971.1|	-	1.3	8.8	8.5	0.1	12.4	2.9	2.0	1	1	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Lactamase_B	PF00753.27	gi|336251741|ref|YP_004598972.1|	-	1.2e-13	51.6	6.2	1.4e-13	51.3	4.8	1.8	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|336251741|ref|YP_004598972.1|	-	5e-10	39.9	0.0	9.4e-10	39.0	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|336251741|ref|YP_004598972.1|	-	0.12	11.8	0.1	0.27	10.7	0.1	1.7	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Ntox46	PF15538.6	gi|336251741|ref|YP_004598972.1|	-	0.21	11.6	0.0	0.4	10.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	toxin	46
TusA	PF01206.17	gi|336251742|ref|YP_004598973.1|	-	9.2e-22	76.7	0.0	1.1e-21	76.5	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|336251742|ref|YP_004598973.1|	-	0.0079	16.0	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DrsE_2	PF13686.6	gi|336251743|ref|YP_004598974.1|	-	5.2e-52	175.8	0.4	6.7e-52	175.5	0.4	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|336251743|ref|YP_004598974.1|	-	6.9e-07	29.6	0.0	2.7e-06	27.7	0.0	1.9	1	1	0	1	1	1	1	DsrE/DsrF-like	family
DUF2937	PF11157.8	gi|336251743|ref|YP_004598974.1|	-	0.015	15.0	0.0	0.033	13.9	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2937)
HalOD1	PF18545.1	gi|336251744|ref|YP_004598975.1|	-	1.9e-24	85.7	0.1	2.1e-24	85.6	0.1	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
EamA	PF00892.20	gi|336251745|ref|YP_004598976.1|	-	7.6e-16	58.5	17.8	8.4e-16	58.4	17.8	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
HalOD1	PF18545.1	gi|336251747|ref|YP_004598978.1|	-	1.4e-19	70.1	0.2	1.8e-19	69.8	0.2	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_20	PF12840.7	gi|336251748|ref|YP_004598979.1|	-	0.019	15.0	0.1	0.038	14.1	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Gcd10p	PF04189.13	gi|336251748|ref|YP_004598979.1|	-	0.084	12.0	0.1	0.11	11.6	0.1	1.1	1	0	0	1	1	1	0	Gcd10p	family
Phage_integrase	PF00589.22	gi|336251749|ref|YP_004598980.1|	-	2.8e-05	24.0	0.0	6e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/all.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/all.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 13:05:00 2019
# [ok]