# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Pyr_excise PF03013.14 gi|336251561|ref|YP_004598792.1| - 0.038 14.0 0.0 0.042 13.8 0.0 1.1 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase DUF5333 PF17267.2 gi|336251561|ref|YP_004598792.1| - 0.071 13.3 0.1 0.12 12.6 0.1 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5333) XLF PF09302.11 gi|336251561|ref|YP_004598792.1| - 0.073 13.2 0.1 0.077 13.2 0.1 1.1 1 0 0 1 1 1 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component Sigma70_r4 PF04545.16 gi|336251561|ref|YP_004598792.1| - 0.079 12.5 0.5 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DUF3040 PF11239.8 gi|336251562|ref|YP_004598793.1| - 1.7 8.9 5.6 2.1 8.7 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF4982 PF16355.5 gi|336251564|ref|YP_004598795.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4982) OppC_N PF12911.7 gi|336251565|ref|YP_004598796.1| - 0.2 11.7 1.4 0.51 10.4 0.1 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C AAA_10 PF12846.7 gi|336251567|ref|YP_004598798.1| - 0.0013 17.7 0.2 0.89 8.4 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|336251567|ref|YP_004598798.1| - 0.0093 16.2 1.5 7.2 6.9 0.2 3.3 3 1 0 3 3 3 2 AAA domain Zot PF05707.12 gi|336251567|ref|YP_004598798.1| - 0.13 11.9 0.3 0.7 9.5 0.1 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF87 PF01935.17 gi|336251568|ref|YP_004598799.1| - 7e-05 23.0 0.1 0.00054 20.1 0.0 2.7 2 1 1 3 3 3 1 Helicase HerA, central domain TraG-D_C PF12696.7 gi|336251568|ref|YP_004598799.1| - 0.011 15.8 0.3 0.047 13.7 0.0 2.1 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG DNA_primase_S PF01896.19 gi|336251569|ref|YP_004598800.1| - 1.5e-05 25.1 0.1 0.023 14.8 0.0 2.5 1 1 1 2 2 2 2 DNA primase small subunit DUF2791 PF10923.8 gi|336251570|ref|YP_004598801.1| - 0.16 10.7 0.0 0.36 9.6 0.0 1.5 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) TPR_14 PF13428.6 gi|336251570|ref|YP_004598801.1| - 0.35 11.8 1.4 29 5.8 0.1 3.6 2 1 1 3 3 3 0 Tetratricopeptide repeat TrmB PF01978.19 gi|336251574|ref|YP_004598805.1| - 2.7e-10 40.0 0.3 1e-09 38.1 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|336251574|ref|YP_004598805.1| - 4.1e-05 23.0 0.0 0.00045 19.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|336251574|ref|YP_004598805.1| - 7.3e-05 22.8 0.0 0.00021 21.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336251574|ref|YP_004598805.1| - 0.00019 21.2 0.0 0.00048 20.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|336251574|ref|YP_004598805.1| - 0.0006 19.7 0.5 0.0018 18.1 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|336251574|ref|YP_004598805.1| - 0.00085 19.1 0.2 0.0058 16.4 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain F-112 PF09645.10 gi|336251574|ref|YP_004598805.1| - 0.00096 19.2 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 2 F-112 protein RP-C PF03428.13 gi|336251574|ref|YP_004598805.1| - 0.018 14.7 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Penicillinase_R PF03965.16 gi|336251574|ref|YP_004598805.1| - 0.022 15.1 0.0 0.042 14.2 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 gi|336251574|ref|YP_004598805.1| - 0.047 14.2 0.0 0.11 13.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|336251574|ref|YP_004598805.1| - 0.13 12.2 0.0 0.4 10.7 0.0 1.9 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|336251576|ref|YP_004598807.1| - 3.8e-08 33.1 0.0 8.1e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336251576|ref|YP_004598807.1| - 1.6e-06 27.8 0.1 2.9e-05 23.8 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|336251576|ref|YP_004598807.1| - 0.0035 17.1 0.1 0.0071 16.1 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|336251576|ref|YP_004598807.1| - 0.0039 17.5 0.0 0.0069 16.7 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor F-112 PF09645.10 gi|336251576|ref|YP_004598807.1| - 0.052 13.7 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 F-112 protein HTH_43 PF09904.9 gi|336251576|ref|YP_004598807.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix AsnC_trans_reg PF01037.21 gi|336251577|ref|YP_004598808.1| - 0.11 12.5 0.4 0.91 9.5 0.0 2.2 2 0 0 2 2 2 0 Lrp/AsnC ligand binding domain PadR PF03551.14 gi|336251578|ref|YP_004598809.1| - 2.1e-17 62.9 1.3 2.6e-17 62.5 1.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|336251578|ref|YP_004598809.1| - 0.016 15.2 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1495 PF07381.11 gi|336251578|ref|YP_004598809.1| - 0.047 13.5 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) FANCL_C PF11793.8 gi|336251579|ref|YP_004598810.1| - 0.00066 19.8 0.9 0.045 13.9 0.1 2.1 2 0 0 2 2 2 1 FANCL C-terminal domain Prok-RING_4 PF14447.6 gi|336251579|ref|YP_004598810.1| - 0.0014 18.5 1.0 0.031 14.1 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 zf-H2C2_2 PF13465.6 gi|336251579|ref|YP_004598810.1| - 0.0081 16.5 1.0 1.3 9.6 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain PHD_4 PF16866.5 gi|336251579|ref|YP_004598810.1| - 0.018 15.1 0.3 0.019 15.0 0.3 1.1 1 0 0 1 1 1 0 PHD-finger zf-C3HC4_3 PF13920.6 gi|336251579|ref|YP_004598810.1| - 0.019 14.8 0.5 1.6 8.7 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-LITAF-like PF10601.9 gi|336251579|ref|YP_004598810.1| - 0.059 13.7 2.6 1 9.6 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-Di19 PF05605.12 gi|336251579|ref|YP_004598810.1| - 0.14 12.5 3.3 0.31 11.4 3.3 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding GAGA PF09237.11 gi|336251579|ref|YP_004598810.1| - 0.16 11.8 2.1 0.7 9.7 0.1 2.1 1 1 1 2 2 2 0 GAGA factor zinc_ribbon_2 PF13240.6 gi|336251580|ref|YP_004598811.1| - 2.4e-05 23.9 3.0 3.2e-05 23.5 3.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336251580|ref|YP_004598811.1| - 5.8e-05 23.0 0.6 6.5e-05 22.9 0.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|336251580|ref|YP_004598811.1| - 8.1e-05 22.6 0.4 8.4e-05 22.6 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|336251580|ref|YP_004598811.1| - 0.00016 22.4 0.3 0.00017 22.3 0.3 1.1 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|336251580|ref|YP_004598811.1| - 0.00026 20.3 3.1 0.00044 19.6 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain RecR PF02132.15 gi|336251580|ref|YP_004598811.1| - 0.004 16.7 1.3 0.0051 16.4 1.3 1.2 1 0 0 1 1 1 1 RecR protein NRDD PF13597.6 gi|336251580|ref|YP_004598811.1| - 0.0058 15.5 0.2 0.0058 15.5 0.2 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Nudix_N_2 PF14803.6 gi|336251580|ref|YP_004598811.1| - 0.0059 16.5 1.1 0.86 9.6 0.9 2.2 1 1 0 1 1 1 1 Nudix N-terminal Rhodanese_C PF12368.8 gi|336251580|ref|YP_004598811.1| - 0.008 16.5 0.4 0.0092 16.3 0.4 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal Zn-ribbon_8 PF09723.10 gi|336251580|ref|YP_004598811.1| - 0.025 14.7 5.3 0.23 11.6 5.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336251580|ref|YP_004598811.1| - 0.046 13.7 3.1 1.6 8.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|336251580|ref|YP_004598811.1| - 0.046 13.9 0.3 0.055 13.6 0.3 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|336251580|ref|YP_004598811.1| - 0.064 13.1 0.5 0.28 11.0 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF35_N PF12172.8 gi|336251580|ref|YP_004598811.1| - 0.13 12.2 4.8 0.26 11.2 4.8 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CpXC PF14353.6 gi|336251580|ref|YP_004598811.1| - 0.14 12.2 2.0 1.3 9.0 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-RRN7 PF11781.8 gi|336251580|ref|YP_004598811.1| - 0.17 11.6 5.2 2.7 7.8 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ISL3 PF14690.6 gi|336251580|ref|YP_004598811.1| - 0.2 12.3 4.5 5.2 7.8 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.11 gi|336251580|ref|YP_004598811.1| - 0.45 10.5 4.0 1.8 8.5 0.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|336251580|ref|YP_004598811.1| - 0.47 10.6 7.4 1.5 8.9 0.8 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF983 PF06170.12 gi|336251580|ref|YP_004598811.1| - 1.2 9.6 3.8 15 6.1 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Rubredoxin_2 PF18073.1 gi|336251580|ref|YP_004598811.1| - 1.2 8.9 5.6 15 5.4 5.8 2.1 1 1 0 1 1 1 0 Rubredoxin metal binding domain ACT_3 PF10000.9 gi|336251582|ref|YP_004598813.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 ACT domain LTD PF00932.19 gi|336251583|ref|YP_004598814.1| - 2.4e-25 89.1 4.5 2.4e-25 89.1 4.5 1.9 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|336251583|ref|YP_004598814.1| - 2.5e-18 66.5 0.0 3.7e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue CAML PF14963.6 gi|336251583|ref|YP_004598814.1| - 5.1 7.2 6.6 9.8 6.2 6.6 1.4 1 0 0 1 1 1 0 Calcium signal-modulating cyclophilin ligand tRNA_anti-codon PF01336.25 gi|336251585|ref|YP_004598816.1| - 0.0001 22.2 0.0 0.0002 21.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RdRP_4 PF02123.16 gi|336251585|ref|YP_004598816.1| - 0.0035 16.3 0.2 0.0043 16.0 0.2 1.1 1 0 0 1 1 1 1 Viral RNA-directed RNA-polymerase NYD-SP28 PF14772.6 gi|336251585|ref|YP_004598816.1| - 0.015 15.3 2.2 0.015 15.3 2.2 2.1 2 0 0 2 2 2 0 Sperm tail DUF4240 PF14024.6 gi|336251585|ref|YP_004598816.1| - 0.067 13.4 0.6 2.2 8.5 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4240) HNH_repeat PF18780.1 gi|336251586|ref|YP_004598817.1| - 1.6e-09 37.3 3.3 0.0017 18.1 0.4 3.6 3 0 0 3 3 3 2 Homing endonuclease repeat zf-C2H2_6 PF13912.6 gi|336251586|ref|YP_004598817.1| - 4.2e-06 26.6 0.1 1e-05 25.4 0.1 1.7 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_4 PF13894.6 gi|336251586|ref|YP_004598817.1| - 0.00032 21.3 0.0 0.0013 19.4 0.0 2.1 1 0 0 1 1 1 1 C2H2-type zinc finger HNH PF01844.23 gi|336251586|ref|YP_004598817.1| - 0.0016 18.5 2.4 0.012 15.7 0.3 2.7 2 0 0 2 2 2 1 HNH endonuclease zf-C2H2_jaz PF12171.8 gi|336251586|ref|YP_004598817.1| - 0.035 14.4 0.1 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding BTRD1 PF17660.1 gi|336251586|ref|YP_004598817.1| - 0.045 13.6 0.4 3.2 7.6 0.1 3.1 3 0 0 3 3 3 0 Bacterial tandem repeat domain 1 Sigma70_r3 PF04539.16 gi|336251586|ref|YP_004598817.1| - 0.063 13.4 0.8 2.9 8.0 0.1 2.6 3 0 0 3 3 3 0 Sigma-70 region 3 zf-C2H2 PF00096.26 gi|336251586|ref|YP_004598817.1| - 0.088 13.3 1.0 0.32 11.5 0.0 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type HNH_2 PF13391.6 gi|336251586|ref|YP_004598817.1| - 0.097 12.8 0.1 0.27 11.4 0.1 1.8 1 0 0 1 1 1 0 HNH endonuclease Snapin_Pallidin PF14712.6 gi|336251586|ref|YP_004598817.1| - 0.1 13.1 0.2 1.6 9.2 0.1 2.2 2 0 0 2 2 2 0 Snapin/Pallidin ThiF PF00899.21 gi|336251587|ref|YP_004598818.1| - 4.7e-27 94.9 0.0 6.9e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 ThiF family Prok-JAB PF14464.6 gi|336251587|ref|YP_004598818.1| - 0.00066 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Phage_GP20 PF06810.11 gi|336251589|ref|YP_004598820.1| - 0.0098 15.7 2.0 0.034 14.0 0.5 2.1 1 1 1 2 2 2 1 Phage minor structural protein GP20 T3SS_needle_E PF08988.10 gi|336251589|ref|YP_004598820.1| - 0.033 14.3 0.1 13 6.1 0.0 2.4 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle DUF1664 PF07889.12 gi|336251589|ref|YP_004598820.1| - 0.038 14.0 1.2 1.9 8.6 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ABC_tran_CTD PF16326.5 gi|336251589|ref|YP_004598820.1| - 0.051 13.8 1.5 9.5 6.6 0.1 2.7 2 1 0 2 2 2 0 ABC transporter C-terminal domain Multi_ubiq PF14452.6 gi|336251589|ref|YP_004598820.1| - 0.11 12.8 2.1 0.2 11.9 0.3 2.4 2 1 0 2 2 2 0 Multiubiquitin BLOC1_2 PF10046.9 gi|336251589|ref|YP_004598820.1| - 0.21 11.9 1.8 2.3 8.6 0.1 2.4 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|336251589|ref|YP_004598820.1| - 1.3 9.6 5.2 6.1 7.4 3.6 2.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Radical_SAM PF04055.21 gi|336251591|ref|YP_004598822.1| - 1.4e-08 35.3 0.6 8.5e-07 29.5 0.7 2.8 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|336251591|ref|YP_004598822.1| - 0.44 10.2 1.5 46 3.6 2.4 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1848) Radical_SAM PF04055.21 gi|336251592|ref|YP_004598823.1| - 1.1e-08 35.7 0.0 3.1e-08 34.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Imm49 PF15575.6 gi|336251595|ref|YP_004598826.1| - 0.0044 16.8 0.0 0.013 15.2 0.0 1.5 1 1 0 1 1 1 1 Immunity protein 49 TPR_12 PF13424.6 gi|336251595|ref|YP_004598826.1| - 0.015 15.6 0.2 0.23 11.8 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat NRho PF16733.5 gi|336251596|ref|YP_004598827.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Rhomboid N-terminal domain AHD PF17793.1 gi|336251601|ref|YP_004598832.1| - 0.054 13.3 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 ANC1 homology domain (AHD) TrmB PF01978.19 gi|336251602|ref|YP_004598833.1| - 0.0011 18.8 0.0 0.0089 15.9 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336251602|ref|YP_004598833.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|336251602|ref|YP_004598833.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix SWIM PF04434.17 gi|336251603|ref|YP_004598834.1| - 0.0024 17.5 0.3 0.0058 16.3 0.3 1.6 1 1 0 1 1 1 1 SWIM zinc finger Rubredoxin_2 PF18073.1 gi|336251603|ref|YP_004598834.1| - 0.025 14.3 1.5 0.047 13.4 1.5 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain ComA PF02679.15 gi|336251604|ref|YP_004598835.1| - 4.8e-80 268.5 0.0 5.5e-80 268.3 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Vinculin PF01044.19 gi|336251604|ref|YP_004598835.1| - 0.11 10.7 0.0 0.13 10.4 0.0 1.0 1 0 0 1 1 1 0 Vinculin family Hydantoinase_A PF01968.18 gi|336251604|ref|YP_004598835.1| - 0.15 11.3 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase MmgE_PrpD PF03972.14 gi|336251605|ref|YP_004598836.1| - 1.9e-119 399.1 3.2 2.3e-119 398.8 3.2 1.0 1 0 0 1 1 1 1 MmgE/PrpD family L_biotic_typeA PF04604.13 gi|336251605|ref|YP_004598836.1| - 5.9 6.8 4.9 15 5.5 0.9 3.3 3 0 0 3 3 3 0 Type-A lantibiotic TFIIB PF00382.19 gi|336251606|ref|YP_004598837.1| - 5.2e-27 93.7 0.1 1.2e-12 47.7 0.1 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336251606|ref|YP_004598837.1| - 1.4e-08 34.1 0.4 2.6e-08 33.2 0.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding FYVE PF01363.21 gi|336251606|ref|YP_004598837.1| - 4.3e-05 23.6 0.1 8.8e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 FYVE zinc finger DnaJ_CXXCXGXG PF00684.19 gi|336251606|ref|YP_004598837.1| - 0.016 15.6 6.2 0.061 13.7 2.0 2.5 2 0 0 2 2 2 0 DnaJ central domain RB_B PF01857.20 gi|336251606|ref|YP_004598837.1| - 0.061 13.4 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain Anti-TRAP PF15777.5 gi|336251606|ref|YP_004598837.1| - 0.2 11.7 0.2 0.2 11.7 0.2 2.1 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc-ribbons_6 PF07191.12 gi|336251606|ref|YP_004598837.1| - 0.2 11.7 3.2 0.12 12.4 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbons Fic_N PF13784.6 gi|336251607|ref|YP_004598838.1| - 3.7e-20 71.7 0.0 6.5e-20 71.0 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 gi|336251607|ref|YP_004598838.1| - 4.2e-18 66.0 0.0 1.8e-17 64.0 0.0 2.1 3 0 0 3 3 3 1 Fic/DOC family HTH_11 PF08279.12 gi|336251607|ref|YP_004598838.1| - 2.6e-05 24.1 0.0 5.9e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|336251607|ref|YP_004598838.1| - 0.00013 21.8 0.2 0.00077 19.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4172 PF13776.6 gi|336251607|ref|YP_004598838.1| - 0.0046 17.3 0.0 0.058 13.7 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4172) GntR PF00392.21 gi|336251607|ref|YP_004598838.1| - 0.015 14.9 0.0 0.072 12.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|336251607|ref|YP_004598838.1| - 0.066 13.3 0.0 0.17 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|336251607|ref|YP_004598838.1| - 0.1 12.8 0.0 0.25 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain RTP PF02334.16 gi|336251607|ref|YP_004598838.1| - 0.11 13.2 0.1 0.46 11.1 0.0 2.0 2 0 0 2 2 2 0 Replication terminator protein MarR_2 PF12802.7 gi|336251607|ref|YP_004598838.1| - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HypA PF01155.19 gi|336251609|ref|YP_004598840.1| - 0.016 15.2 5.9 0.15 12.1 0.2 2.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|336251609|ref|YP_004598840.1| - 0.071 12.8 1.0 0.071 12.8 1.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf-RanBP PF00641.18 gi|336251609|ref|YP_004598840.1| - 0.074 12.4 6.2 1.1 8.6 0.1 2.7 2 1 0 2 2 2 0 Zn-finger in Ran binding protein and others zinc_ribbon_15 PF17032.5 gi|336251609|ref|YP_004598840.1| - 0.19 12.5 8.1 0.53 11.1 1.2 3.1 3 1 1 4 4 4 0 zinc-ribbon family Zn_Tnp_IS1595 PF12760.7 gi|336251609|ref|YP_004598840.1| - 1.3 9.1 8.0 0.65 10.0 3.1 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HATPase_c PF02518.26 gi|336251611|ref|YP_004598842.1| - 3.7e-29 101.5 0.0 8.2e-29 100.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336251611|ref|YP_004598842.1| - 6.6e-13 48.8 0.0 2e-12 47.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|336251611|ref|YP_004598842.1| - 3e-12 46.4 1.9 2e-11 43.7 0.4 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|336251611|ref|YP_004598842.1| - 2.7e-11 43.7 0.0 6.5e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|336251611|ref|YP_004598842.1| - 7.8e-11 42.1 0.0 5.4e-09 36.2 0.0 2.7 2 0 0 2 2 2 1 PAS fold HisKA_4TM PF16926.5 gi|336251611|ref|YP_004598842.1| - 3e-09 36.7 0.0 7.3e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS PF00989.25 gi|336251611|ref|YP_004598842.1| - 4.5e-08 33.1 0.0 3.5e-07 30.2 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|336251611|ref|YP_004598842.1| - 4.8e-07 29.6 0.0 1e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|336251611|ref|YP_004598842.1| - 0.0016 18.4 0.1 0.0031 17.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|336251611|ref|YP_004598842.1| - 0.003 17.5 0.1 0.011 15.8 0.1 2.0 1 0 0 1 1 1 1 PAS domain Pup PF05639.11 gi|336251611|ref|YP_004598842.1| - 0.097 13.6 0.8 0.097 13.6 0.8 2.8 2 1 1 3 3 3 0 Pup-like protein HATPase_c_3 PF13589.6 gi|336251611|ref|YP_004598842.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF5353 PF17304.2 gi|336251611|ref|YP_004598842.1| - 0.22 11.3 0.2 0.86 9.4 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5353) DUF2937 PF11157.8 gi|336251611|ref|YP_004598842.1| - 0.25 11.1 0.5 2.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) TFIIS_C PF01096.18 gi|336251612|ref|YP_004598843.1| - 1.1e-06 28.4 1.6 1.8e-06 27.7 1.6 1.4 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) MerR-DNA-bind PF09278.11 gi|336251612|ref|YP_004598843.1| - 0.02 15.4 0.7 0.031 14.8 0.1 1.6 2 0 0 2 2 2 0 MerR, DNA binding DNA_ligase_ZBD PF03119.16 gi|336251612|ref|YP_004598843.1| - 0.021 14.8 0.2 0.056 13.5 0.2 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-LITAF-like PF10601.9 gi|336251612|ref|YP_004598843.1| - 0.024 14.9 1.0 0.051 13.8 1.0 1.6 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zf-CpG_bind_C PF12269.8 gi|336251612|ref|YP_004598843.1| - 0.039 13.7 0.1 0.048 13.5 0.1 1.2 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain T4_baseplate PF12322.8 gi|336251612|ref|YP_004598843.1| - 0.09 12.2 0.2 0.17 11.4 0.1 1.5 2 0 0 2 2 2 0 T4 bacteriophage base plate protein Ogr_Delta PF04606.12 gi|336251612|ref|YP_004598843.1| - 0.37 10.8 1.9 0.78 9.8 1.9 1.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger VPS13_mid_rpt PF16910.5 gi|336251614|ref|YP_004598845.1| - 0.062 12.7 0.1 0.081 12.3 0.1 1.1 1 0 0 1 1 1 0 Repeating coiled region of VPS13 Cytochrom_C_2 PF01322.20 gi|336251615|ref|YP_004598846.1| - 0.1 13.5 0.1 0.13 13.2 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C' OrfB_Zn_ribbon PF07282.11 gi|336251616|ref|YP_004598847.1| - 0.032 14.2 0.1 0.057 13.3 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|336251616|ref|YP_004598847.1| - 0.12 12.5 1.2 13 6.0 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|336251616|ref|YP_004598847.1| - 0.18 11.7 0.2 0.18 11.7 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|336251616|ref|YP_004598847.1| - 0.42 10.2 6.3 1.8 8.2 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger A2L_zn_ribbon PF08792.10 gi|336251616|ref|YP_004598847.1| - 0.42 10.4 1.6 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|336251616|ref|YP_004598847.1| - 0.57 10.1 0.1 0.57 10.1 0.1 2.6 3 0 0 3 3 3 0 SprT-like zinc ribbon domain DUF3797 PF12677.7 gi|336251616|ref|YP_004598847.1| - 2.4 8.1 5.9 2.1 8.3 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2318 PF10080.9 gi|336251617|ref|YP_004598848.1| - 0.013 15.6 0.2 0.017 15.2 0.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.6 gi|336251617|ref|YP_004598848.1| - 0.021 15.4 0.3 0.027 15.0 0.3 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.7 gi|336251617|ref|YP_004598848.1| - 0.026 14.5 0.8 0.043 13.8 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbon_6 PF10005.9 gi|336251617|ref|YP_004598848.1| - 0.038 14.7 0.8 0.054 14.2 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|336251617|ref|YP_004598848.1| - 0.062 13.2 3.5 2.4 8.2 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|336251617|ref|YP_004598848.1| - 0.097 12.4 2.2 7.3 6.5 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336251617|ref|YP_004598848.1| - 0.12 12.5 1.0 18 5.5 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain GFA PF04828.14 gi|336251617|ref|YP_004598848.1| - 0.16 12.3 2.2 1.7 9.0 0.3 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DNA_ligase_ZBD PF03119.16 gi|336251617|ref|YP_004598848.1| - 0.26 11.4 4.2 0.9 9.6 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Mrr_cat PF04471.12 gi|336251620|ref|YP_004598851.1| - 2.8e-28 98.3 0.0 5.4e-28 97.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|336251620|ref|YP_004598851.1| - 0.0052 16.8 0.3 0.0052 16.8 0.3 1.8 2 0 0 2 2 2 1 Double zinc ribbon Siva PF05458.12 gi|336251620|ref|YP_004598851.1| - 0.015 15.0 1.7 0.023 14.4 1.7 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Mrr_cat_2 PF13156.6 gi|336251620|ref|YP_004598851.1| - 0.018 14.9 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease zf-ribbon_3 PF13248.6 gi|336251620|ref|YP_004598851.1| - 0.039 13.4 2.5 0.1 12.0 2.5 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336251620|ref|YP_004598851.1| - 0.055 14.2 0.4 0.055 14.2 0.4 1.9 2 0 0 2 2 2 0 zinc-ribbon family DUF3797 PF12677.7 gi|336251620|ref|YP_004598851.1| - 0.11 12.3 0.5 0.37 10.7 0.5 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) NOB1_Zn_bind PF08772.11 gi|336251620|ref|YP_004598851.1| - 0.32 11.2 2.1 0.86 9.8 2.1 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|336251620|ref|YP_004598851.1| - 0.37 10.6 5.5 0.11 12.2 2.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain HNH_3 PF13392.6 gi|336251621|ref|YP_004598852.1| - 1.1e-10 41.1 0.7 1.9e-10 40.3 0.7 1.4 1 0 0 1 1 1 1 HNH endonuclease HTH_23 PF13384.6 gi|336251621|ref|YP_004598852.1| - 1.8e-06 27.6 0.1 4.6e-06 26.3 0.1 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|336251621|ref|YP_004598852.1| - 7.2e-05 22.8 0.4 0.00029 20.9 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336251621|ref|YP_004598852.1| - 0.00023 20.8 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|336251621|ref|YP_004598852.1| - 0.00049 19.9 0.0 0.00076 19.3 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4 PF04545.16 gi|336251621|ref|YP_004598852.1| - 0.00086 18.8 0.0 0.0017 17.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|336251621|ref|YP_004598852.1| - 0.004 16.9 0.0 0.0073 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|336251621|ref|YP_004598852.1| - 0.0053 16.6 0.1 0.01 15.7 0.1 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.6 gi|336251621|ref|YP_004598852.1| - 0.0073 15.8 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GcrA PF07750.11 gi|336251621|ref|YP_004598852.1| - 0.0076 16.7 0.0 0.0094 16.4 0.0 1.2 1 0 0 1 1 1 1 GcrA cell cycle regulator HTH_3 PF01381.22 gi|336251621|ref|YP_004598852.1| - 0.011 15.7 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF746 PF05344.11 gi|336251621|ref|YP_004598852.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) MarR PF01047.22 gi|336251621|ref|YP_004598852.1| - 0.015 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|336251621|ref|YP_004598852.1| - 0.028 14.3 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_31 PF13560.6 gi|336251621|ref|YP_004598852.1| - 0.038 14.3 0.2 0.11 12.9 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|336251621|ref|YP_004598852.1| - 0.04 13.9 0.0 0.079 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 gi|336251621|ref|YP_004598852.1| - 0.043 13.7 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|336251621|ref|YP_004598852.1| - 0.044 13.8 0.0 0.089 12.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0122 PF04297.14 gi|336251621|ref|YP_004598852.1| - 0.045 14.0 0.0 0.075 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.19 gi|336251621|ref|YP_004598852.1| - 0.045 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|336251621|ref|YP_004598852.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Phage_terminase PF10668.9 gi|336251621|ref|YP_004598852.1| - 0.056 13.5 0.6 0.11 12.6 0.0 1.8 2 0 0 2 2 1 0 Phage terminase small subunit Peptidase_S15 PF02129.18 gi|336251621|ref|YP_004598852.1| - 0.056 13.0 0.0 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DUF1323 PF07037.11 gi|336251621|ref|YP_004598852.1| - 0.065 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) Crp PF00325.20 gi|336251621|ref|YP_004598852.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_17 PF12728.7 gi|336251621|ref|YP_004598852.1| - 0.099 12.8 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_50 PF18024.1 gi|336251621|ref|YP_004598852.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|336251621|ref|YP_004598852.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein ZnuA PF01297.17 gi|336251622|ref|YP_004598853.1| - 1.9e-40 138.9 0.0 2.3e-40 138.6 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic TAT_signal PF10518.9 gi|336251622|ref|YP_004598853.1| - 0.49 10.3 6.8 0.97 9.4 6.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|336251623|ref|YP_004598854.1| - 8.8e-32 110.5 0.0 1.2e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336251623|ref|YP_004598854.1| - 1.5e-11 44.7 0.2 1.1e-05 25.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336251623|ref|YP_004598854.1| - 2.3e-05 24.0 0.0 4.9e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|336251623|ref|YP_004598854.1| - 5.2e-05 23.0 0.0 9.7e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336251623|ref|YP_004598854.1| - 5.3e-05 22.8 0.0 0.0089 15.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336251623|ref|YP_004598854.1| - 0.00016 22.1 0.3 0.00033 21.1 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|336251623|ref|YP_004598854.1| - 0.00089 19.1 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|336251623|ref|YP_004598854.1| - 0.0023 18.5 0.0 0.0033 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|336251623|ref|YP_004598854.1| - 0.0049 16.8 0.0 0.026 14.4 0.0 2.0 1 1 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|336251623|ref|YP_004598854.1| - 0.0098 16.2 0.1 0.12 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336251623|ref|YP_004598854.1| - 0.018 15.2 0.0 0.047 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|336251623|ref|YP_004598854.1| - 0.02 14.9 0.2 0.1 12.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|336251623|ref|YP_004598854.1| - 0.02 15.1 0.8 0.43 10.8 0.8 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|336251623|ref|YP_004598854.1| - 0.021 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|336251623|ref|YP_004598854.1| - 0.029 14.3 0.0 0.075 12.9 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase ABC_ATPase PF09818.9 gi|336251623|ref|YP_004598854.1| - 0.039 12.7 0.2 3.8 6.2 0.1 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|336251623|ref|YP_004598854.1| - 0.044 13.4 0.2 0.66 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|336251623|ref|YP_004598854.1| - 0.09 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|336251623|ref|YP_004598854.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|336251623|ref|YP_004598854.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|336251623|ref|YP_004598854.1| - 0.13 12.3 0.1 0.23 11.5 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|336251623|ref|YP_004598854.1| - 0.15 11.8 0.1 7.5 6.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein cobW PF02492.19 gi|336251623|ref|YP_004598854.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC-3 PF00950.17 gi|336251624|ref|YP_004598855.1| - 6.3e-59 199.6 41.0 7.9e-59 199.2 41.0 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|336251624|ref|YP_004598855.1| - 3e-05 23.2 37.6 3e-05 23.2 37.6 1.7 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.6 gi|336251624|ref|YP_004598855.1| - 0.031 14.5 0.5 0.11 12.7 0.5 1.9 1 0 0 1 1 1 0 DUF2407 C-terminal domain Glycophorin_A PF01102.18 gi|336251624|ref|YP_004598855.1| - 2.5 8.4 5.8 32 4.8 0.0 3.0 2 1 0 2 2 2 0 Glycophorin A Fe_dep_repr_C PF02742.15 gi|336251625|ref|YP_004598856.1| - 3.7e-29 100.6 0.4 6.5e-29 99.8 0.4 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|336251625|ref|YP_004598856.1| - 4.1e-19 68.5 0.9 9.3e-19 67.4 0.9 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|336251625|ref|YP_004598856.1| - 1.2e-13 51.1 0.4 2.5e-13 50.1 0.3 1.6 2 0 0 2 2 1 1 FeoA domain MarR_2 PF12802.7 gi|336251625|ref|YP_004598856.1| - 6e-08 32.5 0.1 2.5e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|336251625|ref|YP_004598856.1| - 1.3e-07 31.4 0.1 2.1e-06 27.6 0.0 2.5 3 0 0 3 3 2 1 MarR family HTH_20 PF12840.7 gi|336251625|ref|YP_004598856.1| - 7.6e-07 29.1 0.0 2.8e-06 27.3 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336251625|ref|YP_004598856.1| - 2.9e-06 27.2 0.1 6.6e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|336251625|ref|YP_004598856.1| - 5.4e-06 26.8 0.3 1.5e-05 25.4 0.3 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|336251625|ref|YP_004598856.1| - 2.5e-05 23.8 0.1 0.00011 21.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|336251625|ref|YP_004598856.1| - 3e-05 23.9 0.0 9.6e-05 22.3 0.0 1.9 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|336251625|ref|YP_004598856.1| - 6.2e-05 22.8 0.1 0.00012 21.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|336251625|ref|YP_004598856.1| - 6.8e-05 22.6 0.0 0.00015 21.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336251625|ref|YP_004598856.1| - 9e-05 22.0 0.0 0.00018 21.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|336251625|ref|YP_004598856.1| - 0.00014 21.7 0.2 0.0015 18.4 0.0 2.4 2 1 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|336251625|ref|YP_004598856.1| - 0.00019 21.7 0.1 0.0016 18.7 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|336251625|ref|YP_004598856.1| - 0.00034 20.5 0.1 0.00076 19.4 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|336251625|ref|YP_004598856.1| - 0.003 17.3 0.8 0.007 16.1 0.1 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|336251625|ref|YP_004598856.1| - 0.0048 17.0 0.1 0.0088 16.1 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.17 gi|336251625|ref|YP_004598856.1| - 0.0072 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_36 PF13730.6 gi|336251625|ref|YP_004598856.1| - 0.0089 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|336251625|ref|YP_004598856.1| - 0.015 15.1 0.5 0.039 13.7 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain AF0941-like PF14591.6 gi|336251625|ref|YP_004598856.1| - 0.015 15.8 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 AF0941-like HTH_AsnC-type PF13404.6 gi|336251625|ref|YP_004598856.1| - 0.019 14.8 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.16 gi|336251625|ref|YP_004598856.1| - 0.029 14.7 0.1 0.063 13.6 0.1 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_10 PF04967.12 gi|336251625|ref|YP_004598856.1| - 0.031 14.1 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Topoisom_bac PF01131.20 gi|336251625|ref|YP_004598856.1| - 0.034 13.1 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase BLACT_WH PF17778.1 gi|336251625|ref|YP_004598856.1| - 0.055 13.5 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_DeoR PF08220.12 gi|336251625|ref|YP_004598856.1| - 0.078 12.7 0.1 0.22 11.3 0.1 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF505 PF04458.12 gi|336251625|ref|YP_004598856.1| - 0.085 11.2 0.1 0.11 10.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_CodY PF08222.11 gi|336251625|ref|YP_004598856.1| - 0.11 12.1 0.0 0.32 10.6 0.0 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF4423 PF14394.6 gi|336251625|ref|YP_004598856.1| - 0.19 11.4 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF993 PF06187.11 gi|336251627|ref|YP_004598858.1| - 0.0051 15.8 0.1 0.0077 15.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) DUF402 PF04167.13 gi|336251627|ref|YP_004598858.1| - 0.06 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF402) ACP53EA PF06313.11 gi|336251628|ref|YP_004598859.1| - 0.075 13.2 0.0 0.12 12.6 0.0 1.4 1 1 0 1 1 1 0 Drosophila ACP53EA protein Peptidase_M78 PF06114.13 gi|336251631|ref|YP_004598862.1| - 0.0019 18.1 0.0 0.0034 17.3 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|336251631|ref|YP_004598862.1| - 0.016 15.0 0.1 0.051 13.4 0.1 1.8 2 0 0 2 2 2 0 SprT-like family Aminopep PF10023.9 gi|336251631|ref|YP_004598862.1| - 0.081 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Putative aminopeptidase DUF2268 PF10026.9 gi|336251631|ref|YP_004598862.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF2274 PF10038.9 gi|336251632|ref|YP_004598863.1| - 0.061 13.8 0.5 2.8 8.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) Cdc6_C PF09079.11 gi|336251633|ref|YP_004598864.1| - 8.1e-14 51.4 0.0 3e-13 49.5 0.0 2.0 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|336251633|ref|YP_004598864.1| - 1.1e-11 45.5 0.0 3.1e-11 44.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|336251633|ref|YP_004598864.1| - 1.3e-10 41.8 0.0 2.9e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336251633|ref|YP_004598864.1| - 4.4e-08 33.5 0.0 1.1e-07 32.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|336251633|ref|YP_004598864.1| - 1.6e-06 27.5 0.0 3.7e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|336251633|ref|YP_004598864.1| - 0.0001 22.3 0.0 0.00027 21.0 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|336251633|ref|YP_004598864.1| - 0.00012 21.6 0.0 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|336251633|ref|YP_004598864.1| - 0.0024 17.8 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|336251633|ref|YP_004598864.1| - 0.013 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|336251633|ref|YP_004598864.1| - 0.025 14.1 0.0 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|336251633|ref|YP_004598864.1| - 0.046 13.4 0.1 0.16 11.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336251633|ref|YP_004598864.1| - 0.082 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|336251633|ref|YP_004598864.1| - 0.096 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_PrkA PF08298.11 gi|336251633|ref|YP_004598864.1| - 0.096 11.6 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain IstB_IS21 PF01695.17 gi|336251633|ref|YP_004598864.1| - 0.13 12.0 0.0 0.93 9.2 0.0 2.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|336251633|ref|YP_004598864.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain PIN PF01850.21 gi|336251635|ref|YP_004598866.1| - 0.0009 19.7 0.2 0.011 16.2 0.2 2.1 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|336251635|ref|YP_004598866.1| - 0.0011 19.5 0.2 0.0018 18.8 0.2 1.3 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|336251635|ref|YP_004598866.1| - 0.0017 19.1 0.3 0.0023 18.7 0.3 1.3 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|336251635|ref|YP_004598866.1| - 0.0044 16.7 0.0 0.017 14.9 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF5615) AAA_31 PF13614.6 gi|336251636|ref|YP_004598867.1| - 1.3e-18 67.5 0.0 1.9e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336251636|ref|YP_004598867.1| - 4.5e-12 46.1 0.0 6.9e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|336251636|ref|YP_004598867.1| - 2.2e-07 30.6 0.1 1.3e-06 28.0 0.1 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|336251636|ref|YP_004598867.1| - 2.4e-05 23.7 0.1 7.1e-05 22.1 0.1 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|336251636|ref|YP_004598867.1| - 0.00043 19.7 0.1 0.51 9.6 0.0 2.3 1 1 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|336251636|ref|YP_004598867.1| - 0.00089 18.8 0.0 0.0025 17.3 0.0 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|336251636|ref|YP_004598867.1| - 0.031 13.7 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF2543 PF10820.8 gi|336251637|ref|YP_004598868.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) Pyr_redox_2 PF07992.14 gi|336251638|ref|YP_004598869.1| - 2e-30 106.1 0.0 2.6e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336251638|ref|YP_004598869.1| - 3.7e-15 56.0 0.0 7e-10 38.7 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336251638|ref|YP_004598869.1| - 1.2e-07 32.2 0.0 0.0062 17.1 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336251638|ref|YP_004598869.1| - 1.1e-05 24.7 4.4 1.6e-05 24.2 1.0 2.3 2 1 1 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|336251638|ref|YP_004598869.1| - 2.6e-05 23.1 0.1 0.00083 18.2 0.4 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|336251638|ref|YP_004598869.1| - 3.5e-05 23.2 1.2 0.00015 21.1 1.0 1.9 1 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|336251638|ref|YP_004598869.1| - 3.7e-05 23.3 2.4 6.8e-05 22.4 2.4 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|336251638|ref|YP_004598869.1| - 6.1e-05 22.8 1.6 0.001 18.8 1.2 2.5 1 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336251638|ref|YP_004598869.1| - 7e-05 23.0 0.1 0.00026 21.2 0.3 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|336251638|ref|YP_004598869.1| - 0.00014 21.1 0.2 0.00031 19.9 0.2 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|336251638|ref|YP_004598869.1| - 0.0019 17.5 0.2 0.0029 17.0 0.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|336251638|ref|YP_004598869.1| - 0.008 15.4 0.0 0.022 13.9 0.0 1.6 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|336251638|ref|YP_004598869.1| - 0.011 15.8 0.3 1.9 8.5 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|336251638|ref|YP_004598869.1| - 0.034 13.4 0.1 0.059 12.6 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Trp_halogenase PF04820.14 gi|336251638|ref|YP_004598869.1| - 0.041 12.7 0.3 0.21 10.4 0.3 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|336251639|ref|YP_004598870.1| - 2.5e-42 145.1 0.6 3.1e-42 144.8 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336251639|ref|YP_004598870.1| - 4.2e-20 72.1 0.3 1.9e-17 63.6 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336251639|ref|YP_004598870.1| - 5.1e-17 62.1 0.3 9.1e-13 48.1 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336251639|ref|YP_004598870.1| - 8.9e-10 38.2 7.8 6.1e-06 25.6 0.2 4.1 4 1 1 5 5 5 3 FAD binding domain FAD_oxidored PF12831.7 gi|336251639|ref|YP_004598870.1| - 5.1e-07 29.4 0.2 1.5e-05 24.5 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|336251639|ref|YP_004598870.1| - 2e-06 27.7 8.0 0.00013 21.6 0.3 3.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336251639|ref|YP_004598870.1| - 3.6e-06 27.1 0.1 3.5e-05 23.9 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|336251639|ref|YP_004598870.1| - 1.9e-05 24.0 0.1 0.00092 18.5 0.0 2.4 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|336251639|ref|YP_004598870.1| - 2.2e-05 23.3 0.1 0.021 13.5 0.1 3.2 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|336251639|ref|YP_004598870.1| - 5.7e-05 22.4 0.5 0.01 14.9 0.0 3.0 4 0 0 4 4 4 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|336251639|ref|YP_004598870.1| - 0.00012 21.2 0.6 0.094 11.7 0.3 2.9 3 0 0 3 3 3 2 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|336251639|ref|YP_004598870.1| - 0.00042 20.7 0.0 0.0031 17.9 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|336251639|ref|YP_004598870.1| - 0.0021 17.2 0.0 0.085 12.0 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|336251639|ref|YP_004598870.1| - 0.003 16.9 0.2 0.12 11.7 0.2 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|336251639|ref|YP_004598870.1| - 0.003 16.9 3.3 1.8 7.7 0.3 3.4 2 1 1 3 3 3 1 FAD binding domain MCRA PF06100.11 gi|336251639|ref|YP_004598870.1| - 0.099 11.4 0.2 0.2 10.4 0.1 1.5 2 0 0 2 2 2 0 MCRA family FMO-like PF00743.19 gi|336251639|ref|YP_004598870.1| - 0.27 9.6 0.0 8 4.8 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Thioredoxin PF00085.20 gi|336251640|ref|YP_004598871.1| - 3.1e-28 97.8 0.0 3.4e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336251640|ref|YP_004598871.1| - 2.5e-11 44.0 0.0 1.8e-09 38.0 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|336251640|ref|YP_004598871.1| - 2.4e-06 27.8 0.0 0.0012 19.1 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|336251640|ref|YP_004598871.1| - 9.5e-06 25.7 0.1 1.9e-05 24.7 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|336251640|ref|YP_004598871.1| - 1.1e-05 25.4 0.0 1.5e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|336251640|ref|YP_004598871.1| - 2e-05 24.4 0.0 2.3e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|336251640|ref|YP_004598871.1| - 7.1e-05 22.7 0.2 0.0011 18.7 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain HyaE PF07449.11 gi|336251640|ref|YP_004598871.1| - 0.0008 19.4 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|336251640|ref|YP_004598871.1| - 0.0027 17.1 0.0 0.0034 16.8 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|336251640|ref|YP_004598871.1| - 0.012 15.6 0.0 0.035 14.0 0.0 1.7 1 1 0 1 1 1 0 AhpC/TSA family Thioredoxin_3 PF13192.6 gi|336251640|ref|YP_004598871.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain Glutaredoxin PF00462.24 gi|336251640|ref|YP_004598871.1| - 0.029 14.6 0.0 0.053 13.7 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin DUF836 PF05768.14 gi|336251640|ref|YP_004598871.1| - 0.031 14.7 0.0 0.041 14.3 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|336251640|ref|YP_004598871.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin Methyltransf_11 PF08241.12 gi|336251641|ref|YP_004598872.1| - 4.4e-20 72.1 0.0 7.1e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336251641|ref|YP_004598872.1| - 1.3e-19 70.7 0.0 2.2e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336251641|ref|YP_004598872.1| - 1.8e-19 70.0 0.0 2.3e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|336251641|ref|YP_004598872.1| - 4.8e-16 58.9 0.0 6.5e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336251641|ref|YP_004598872.1| - 1.8e-13 51.0 0.0 3e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336251641|ref|YP_004598872.1| - 1.6e-12 47.6 0.0 2.2e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336251641|ref|YP_004598872.1| - 4.8e-11 42.8 0.0 6.8e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|336251641|ref|YP_004598872.1| - 0.00022 21.0 0.0 0.0003 20.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltr_RsmB-F PF01189.17 gi|336251641|ref|YP_004598872.1| - 0.00027 20.6 0.0 0.00044 19.9 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NodS PF05401.11 gi|336251641|ref|YP_004598872.1| - 0.0019 17.8 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|336251641|ref|YP_004598872.1| - 0.002 17.2 0.0 0.0025 16.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.17 gi|336251641|ref|YP_004598872.1| - 0.003 16.7 0.0 0.0035 16.5 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|336251641|ref|YP_004598872.1| - 0.0032 16.6 0.0 0.0089 15.1 0.0 1.6 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.17 gi|336251641|ref|YP_004598872.1| - 0.0033 16.9 0.0 0.013 14.9 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase DUF938 PF06080.12 gi|336251641|ref|YP_004598872.1| - 0.013 15.3 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.6 gi|336251641|ref|YP_004598872.1| - 0.013 15.5 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|336251641|ref|YP_004598872.1| - 0.024 13.8 0.0 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase CMAS PF02353.20 gi|336251641|ref|YP_004598872.1| - 0.03 13.6 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|336251641|ref|YP_004598872.1| - 0.064 14.3 0.0 0.13 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|336251641|ref|YP_004598872.1| - 0.11 12.0 0.0 0.22 11.1 0.0 1.4 2 0 0 2 2 2 0 Methyltransferase small domain CheR PF01739.18 gi|336251641|ref|YP_004598872.1| - 0.26 10.7 0.0 1.3 8.5 0.0 1.8 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain DUF302 PF03625.14 gi|336251642|ref|YP_004598873.1| - 1.4e-26 92.2 0.0 1.9e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF302 DUF3215 PF11503.8 gi|336251642|ref|YP_004598873.1| - 0.085 12.7 0.3 0.085 12.7 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) Rhodanese PF00581.20 gi|336251643|ref|YP_004598874.1| - 2.3e-13 50.6 0.0 4.1e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|336251643|ref|YP_004598874.1| - 5.3e-13 49.4 4.2 1.1e-12 48.3 4.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336251643|ref|YP_004598874.1| - 0.002 17.7 0.5 0.0083 15.7 0.5 1.9 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336251643|ref|YP_004598874.1| - 0.021 14.7 0.2 0.051 13.5 0.2 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 gi|336251644|ref|YP_004598875.1| - 4e-61 206.6 0.2 4.4e-61 206.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336251644|ref|YP_004598875.1| - 2.4e-42 144.6 0.0 3e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336251644|ref|YP_004598875.1| - 2e-10 40.9 0.0 2.7e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 KR domain TcdA_TcdB_pore PF12920.7 gi|336251645|ref|YP_004598876.1| - 0.96 7.6 1.8 1 7.5 1.8 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Usp PF00582.26 gi|336251646|ref|YP_004598877.1| - 1.3e-62 210.5 15.1 1.4e-34 119.6 4.6 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF2478 PF10649.9 gi|336251646|ref|YP_004598877.1| - 0.015 14.9 3.2 2.8 7.5 0.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2478) SRP54 PF00448.22 gi|336251646|ref|YP_004598877.1| - 0.022 14.4 0.2 0.34 10.5 0.0 2.5 1 1 2 3 3 3 0 SRP54-type protein, GTPase domain Bac_thur_toxin PF01338.18 gi|336251646|ref|YP_004598877.1| - 0.028 13.9 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacillus thuringiensis toxin AP_endonuc_2 PF01261.24 gi|336251646|ref|YP_004598877.1| - 0.21 11.0 3.5 0.15 11.5 0.7 2.2 2 2 0 2 2 2 0 Xylose isomerase-like TIM barrel Usp PF00582.26 gi|336251647|ref|YP_004598878.1| - 4.2e-09 37.1 0.3 4.9e-09 36.8 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family PAC2 PF09754.9 gi|336251648|ref|YP_004598879.1| - 1.3e-27 97.2 0.0 1.5e-27 97.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family ABC2_membrane_2 PF12679.7 gi|336251649|ref|YP_004598880.1| - 2.3e-14 53.3 18.0 1.1e-13 51.1 18.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336251649|ref|YP_004598880.1| - 2.9e-07 29.9 7.4 2.9e-07 29.9 7.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|336251649|ref|YP_004598880.1| - 1e-06 28.5 6.9 2.4e-06 27.3 6.3 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336251649|ref|YP_004598880.1| - 1.4e-05 24.6 10.0 1.4e-05 24.6 10.0 1.7 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|336251649|ref|YP_004598880.1| - 2.4e-05 24.4 5.1 2.4e-05 24.4 5.1 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein NPCBM_assoc PF10633.9 gi|336251650|ref|YP_004598881.1| - 1.2e-05 25.4 10.2 0.056 13.7 0.3 3.4 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|336251650|ref|YP_004598881.1| - 6.5e-05 23.2 12.0 0.031 14.6 5.1 3.9 2 2 1 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|336251650|ref|YP_004598881.1| - 0.00011 22.4 8.2 0.11 12.8 4.3 2.9 2 1 0 2 2 2 2 CARDB Fn3-like PF14310.6 gi|336251650|ref|YP_004598881.1| - 0.018 15.1 0.9 1.9 8.6 0.0 3.4 3 0 0 3 3 3 0 Fibronectin type III-like domain DUF4981 PF16353.5 gi|336251650|ref|YP_004598881.1| - 0.091 13.3 0.3 33 5.0 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function(DUF4981) DUF2393 PF09624.10 gi|336251650|ref|YP_004598881.1| - 0.22 11.5 0.0 9.1 6.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) DUF3869 PF12985.7 gi|336251650|ref|YP_004598881.1| - 0.28 11.6 4.4 0.43 11.0 2.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3869) DUF4750 PF15938.5 gi|336251650|ref|YP_004598881.1| - 9.6 6.0 6.8 2.5 7.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4750) ABC_tran PF00005.27 gi|336251651|ref|YP_004598882.1| - 1.3e-26 93.8 0.0 1.8e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336251651|ref|YP_004598882.1| - 4.5e-12 46.4 1.0 6.5e-07 29.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336251651|ref|YP_004598882.1| - 0.00022 21.9 0.0 0.00038 21.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|336251651|ref|YP_004598882.1| - 0.00098 19.7 0.1 0.0015 19.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336251651|ref|YP_004598882.1| - 0.0079 15.9 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|336251651|ref|YP_004598882.1| - 0.06 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|336251651|ref|YP_004598882.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SOUL PF04832.12 gi|336251652|ref|YP_004598883.1| - 1.6e-43 148.8 1.1 2.4e-42 145.0 1.1 2.0 1 1 0 1 1 1 1 SOUL heme-binding protein Usp PF00582.26 gi|336251653|ref|YP_004598884.1| - 7.7e-31 107.5 0.1 1e-30 107.1 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family zf-C2H2_6 PF13912.6 gi|336251654|ref|YP_004598885.1| - 0.019 14.9 0.2 0.026 14.5 0.2 1.2 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2_4 PF13894.6 gi|336251654|ref|YP_004598885.1| - 0.025 15.4 0.0 0.046 14.6 0.0 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger DUF983 PF06170.12 gi|336251654|ref|YP_004598885.1| - 5.3 7.5 6.0 19 5.8 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF983) DUF2267 PF10025.9 gi|336251655|ref|YP_004598886.1| - 1.1e-35 122.5 1.1 2.1e-35 121.6 0.6 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2267) Usp PF00582.26 gi|336251656|ref|YP_004598887.1| - 9e-53 178.6 10.9 2.9e-30 105.6 1.3 2.1 2 0 0 2 2 2 2 Universal stress protein family Phycobilisome PF00502.19 gi|336251656|ref|YP_004598887.1| - 0.043 13.8 0.2 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 Phycobilisome protein DUF1427 PF07235.11 gi|336251657|ref|YP_004598888.1| - 0.034 14.1 0.1 0.079 12.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1427) Usp PF00582.26 gi|336251658|ref|YP_004598889.1| - 1.6e-26 93.5 1.6 2e-26 93.2 1.6 1.1 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|336251658|ref|YP_004598889.1| - 0.1 13.4 0.0 0.22 12.3 0.0 1.7 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain TAT_signal PF10518.9 gi|336251659|ref|YP_004598890.1| - 1.8e-05 24.4 0.2 2.5e-05 23.9 0.2 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NAPRTase_N PF17767.1 gi|336251660|ref|YP_004598891.1| - 1.3e-32 112.8 0.0 2.6e-32 111.8 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase PF04095.16 gi|336251660|ref|YP_004598891.1| - 8.3e-12 45.2 0.2 2.6e-11 43.6 0.2 1.7 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_C PF17956.1 gi|336251660|ref|YP_004598891.1| - 3.5e-11 43.5 0.0 1.2e-09 38.6 0.0 2.4 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain Usp PF00582.26 gi|336251661|ref|YP_004598892.1| - 5.8e-28 98.2 0.2 7.5e-28 97.8 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family CBS PF00571.28 gi|336251662|ref|YP_004598893.1| - 4.9e-24 84.5 4.3 1.6e-11 44.5 1.5 2.2 2 0 0 2 2 2 2 CBS domain YdjM PF04307.14 gi|336251663|ref|YP_004598894.1| - 4.1e-05 23.0 17.6 0.00082 18.7 17.6 2.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Insulin_TMD PF17870.1 gi|336251663|ref|YP_004598894.1| - 0.0079 16.2 1.3 0.023 14.8 1.3 1.8 1 0 0 1 1 1 1 Insulin receptor trans-membrane segment Pyridox_ox_2 PF12900.7 gi|336251664|ref|YP_004598895.1| - 2.6e-20 72.8 0.0 3.1e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|336251664|ref|YP_004598895.1| - 7.1e-05 22.9 0.0 9.5e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|336251665|ref|YP_004598896.1| - 1.7e-17 63.8 0.0 1.9e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Sulfatase PF00884.23 gi|336251666|ref|YP_004598897.1| - 4.7e-40 137.9 0.0 6.6e-40 137.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|336251666|ref|YP_004598897.1| - 1.5e-08 34.8 1.7 6e-05 23.2 0.6 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|336251666|ref|YP_004598897.1| - 1e-07 31.9 0.3 1.5e-06 28.1 0.3 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase NTP_transferase PF00483.23 gi|336251667|ref|YP_004598898.1| - 3.4e-32 112.0 0.0 4.2e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336251667|ref|YP_004598898.1| - 1.1e-13 51.8 0.0 1.5e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|336251667|ref|YP_004598898.1| - 0.093 12.5 0.3 1.2 8.9 0.2 2.6 2 1 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Usp PF00582.26 gi|336251668|ref|YP_004598899.1| - 2.2e-60 203.3 1.9 3.6e-30 105.3 1.4 2.0 2 0 0 2 2 2 2 Universal stress protein family E3_binding PF02817.17 gi|336251668|ref|YP_004598899.1| - 0.041 14.2 0.4 13 6.2 0.1 4.0 4 0 0 4 4 4 0 e3 binding domain Glycos_transf_1 PF00534.20 gi|336251669|ref|YP_004598900.1| - 2.6e-30 105.2 0.0 3.9e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336251669|ref|YP_004598900.1| - 3.4e-16 59.9 0.0 6.5e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|336251669|ref|YP_004598900.1| - 3.3e-07 30.6 0.0 8.4e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Usp PF00582.26 gi|336251670|ref|YP_004598901.1| - 3.2e-31 108.7 1.4 3.5e-31 108.6 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|336251670|ref|YP_004598901.1| - 0.00044 19.8 1.3 0.0006 19.3 1.1 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel CobU PF02283.16 gi|336251670|ref|YP_004598901.1| - 0.034 13.7 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Dodecin PF07311.12 gi|336251670|ref|YP_004598901.1| - 0.087 13.1 2.1 0.4 11.0 0.0 2.3 2 0 0 2 2 2 0 Dodecin Usp PF00582.26 gi|336251671|ref|YP_004598902.1| - 5.1e-62 208.5 7.7 3.8e-32 111.7 1.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DNA_photolyase PF00875.18 gi|336251671|ref|YP_004598902.1| - 0.065 13.2 0.5 4.6 7.2 0.0 2.8 2 1 0 2 2 2 0 DNA photolyase Fe-ADH PF00465.19 gi|336251672|ref|YP_004598903.1| - 2.7e-63 214.0 6.6 3.1e-63 213.8 6.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|336251672|ref|YP_004598903.1| - 2.4e-34 119.2 0.5 3.1e-34 118.8 0.5 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|336251672|ref|YP_004598903.1| - 0.00015 21.1 3.7 0.00057 19.1 3.7 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase SpoVS PF04232.12 gi|336251672|ref|YP_004598903.1| - 0.096 12.4 0.1 0.31 10.8 0.1 1.8 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) PUB PF09409.10 gi|336251672|ref|YP_004598903.1| - 0.2 11.6 0.0 0.94 9.4 0.0 1.9 2 0 0 2 2 2 0 PUB domain AP_endonuc_2 PF01261.24 gi|336251674|ref|YP_004598905.1| - 4e-21 75.4 1.4 6e-21 74.9 1.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Usp PF00582.26 gi|336251676|ref|YP_004598907.1| - 3.5e-35 121.6 2.8 3.9e-35 121.4 2.8 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|336251676|ref|YP_004598907.1| - 0.049 13.1 0.1 0.45 9.9 0.1 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel NTP_transf_2 PF01909.23 gi|336251676|ref|YP_004598907.1| - 0.081 13.2 1.8 6.5 7.1 0.5 2.4 1 1 1 2 2 2 0 Nucleotidyltransferase domain Usp PF00582.26 gi|336251677|ref|YP_004598908.1| - 9.2e-71 236.9 7.6 5e-36 124.3 1.3 2.0 2 0 0 2 2 2 2 Universal stress protein family DXP_reductoisom PF02670.16 gi|336251677|ref|YP_004598908.1| - 0.021 15.5 0.2 2 9.2 0.0 2.3 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lactamase_B_4 PF13691.6 gi|336251677|ref|YP_004598908.1| - 0.052 13.2 0.0 16 5.3 0.0 2.4 2 0 0 2 2 2 0 tRNase Z endonuclease Usp PF00582.26 gi|336251678|ref|YP_004598909.1| - 1.2e-07 32.3 1.0 2e-07 31.6 1.0 1.4 1 1 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|336251679|ref|YP_004598910.1| - 6e-34 117.6 0.2 6.7e-34 117.4 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family YaeQ PF07152.12 gi|336251679|ref|YP_004598910.1| - 0.16 11.6 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 YaeQ protein Usp PF00582.26 gi|336251680|ref|YP_004598911.1| - 1.9e-27 96.5 0.4 2.2e-27 96.3 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2267 PF10025.9 gi|336251681|ref|YP_004598912.1| - 2.8e-35 121.3 0.3 3.1e-35 121.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Usp PF00582.26 gi|336251682|ref|YP_004598913.1| - 4.1e-67 225.1 5.6 8.7e-34 117.0 1.0 2.1 2 0 0 2 2 2 2 Universal stress protein family ArsD PF06953.11 gi|336251682|ref|YP_004598913.1| - 0.18 12.1 0.0 0.38 11.1 0.0 1.4 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD MFS_1 PF07690.16 gi|336251683|ref|YP_004598914.1| - 4.8e-37 127.7 40.0 2.5e-19 69.4 18.1 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|336251683|ref|YP_004598914.1| - 2e-08 33.5 17.0 0.0016 17.4 3.5 3.7 3 1 1 4 4 4 3 MFS_1 like family Rhodanese PF00581.20 gi|336251684|ref|YP_004598915.1| - 8.8e-15 55.2 0.0 2.1e-14 53.9 0.0 1.7 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|336251684|ref|YP_004598915.1| - 1e-12 48.5 6.6 4.2e-12 46.5 6.6 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336251684|ref|YP_004598915.1| - 0.0023 17.5 1.1 0.0096 15.5 0.3 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain HTH_10 PF04967.12 gi|336251685|ref|YP_004598916.1| - 2.1e-21 75.5 0.5 3.4e-21 74.8 0.5 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|336251685|ref|YP_004598916.1| - 0.0061 16.7 0.1 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Polyketide_cyc2 PF10604.9 gi|336251686|ref|YP_004598917.1| - 2.4 8.4 8.2 1.6 9.0 2.3 3.1 3 2 1 4 4 4 0 Polyketide cyclase / dehydrase and lipid transport VIT1 PF01988.19 gi|336251687|ref|YP_004598918.1| - 8e-10 38.9 2.1 8e-10 38.9 2.1 2.1 2 0 0 2 2 2 1 VIT family BTP PF05232.12 gi|336251687|ref|YP_004598918.1| - 5.9 7.0 6.2 2.5 8.2 0.0 2.7 2 1 1 3 3 3 0 Chlorhexidine efflux transporter DUF211 PF02680.14 gi|336251688|ref|YP_004598919.1| - 6.4e-34 116.0 0.9 7.1e-34 115.8 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 E1-E2_ATPase PF00122.20 gi|336251690|ref|YP_004598921.1| - 7.2e-57 191.8 3.1 7.2e-57 191.8 3.1 3.4 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|336251690|ref|YP_004598921.1| - 8.5e-40 136.4 2.9 1.8e-39 135.3 2.9 1.5 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|336251690|ref|YP_004598921.1| - 1.2e-26 94.3 1.2 2.8e-26 93.1 1.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|336251690|ref|YP_004598921.1| - 1.1e-18 67.1 0.0 2.5e-18 66.0 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|336251690|ref|YP_004598921.1| - 7.9e-17 60.7 0.0 1.7e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|336251690|ref|YP_004598921.1| - 4.7e-05 23.2 0.7 0.0012 18.7 0.2 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336251690|ref|YP_004598921.1| - 0.00012 22.6 0.6 0.00051 20.5 0.1 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|336251691|ref|YP_004598922.1| - 2.7e-48 163.9 1.8 2.7e-48 163.9 1.8 3.0 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|336251691|ref|YP_004598922.1| - 3.4e-38 131.2 7.2 3.4e-38 131.2 7.2 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|336251691|ref|YP_004598922.1| - 2.1e-23 83.7 4.6 5.3e-23 82.4 4.6 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|336251691|ref|YP_004598922.1| - 2.3e-17 62.4 0.0 6.2e-17 61.1 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|336251691|ref|YP_004598922.1| - 1e-16 60.8 0.0 2.3e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|336251691|ref|YP_004598922.1| - 1.9e-08 34.4 0.3 5.8e-05 23.0 0.7 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336251691|ref|YP_004598922.1| - 0.011 16.2 0.4 0.024 15.1 0.3 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase TrbC PF04956.13 gi|336251691|ref|YP_004598922.1| - 0.43 10.8 0.0 0.43 10.8 0.0 3.9 4 1 0 4 4 4 0 TrbC/VIRB2 family Trp_oprn_chp PF09534.10 gi|336251691|ref|YP_004598922.1| - 9.2 6.0 9.6 4.7 7.0 3.6 3.0 3 0 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) CBS PF00571.28 gi|336251692|ref|YP_004598923.1| - 5.3e-25 87.6 2.7 2e-12 47.4 0.9 2.6 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|336251692|ref|YP_004598923.1| - 1.8e-20 72.7 0.0 4.7e-20 71.4 0.0 1.7 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|336251692|ref|YP_004598923.1| - 1.9e-07 31.2 0.0 4.8e-07 30.0 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|336251692|ref|YP_004598923.1| - 0.0048 17.2 0.2 0.11 12.9 0.0 2.8 3 0 0 3 3 3 1 Thioesterase superfamily tRNA_anti-codon PF01336.25 gi|336251692|ref|YP_004598923.1| - 0.043 13.8 0.2 1.7 8.7 0.0 3.0 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain TruB_C PF09142.11 gi|336251692|ref|YP_004598923.1| - 0.087 12.6 0.0 1.3 8.8 0.0 2.9 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal Pyridox_ox_2 PF12900.7 gi|336251693|ref|YP_004598924.1| - 7.4e-19 68.1 0.0 8.4e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|336251693|ref|YP_004598924.1| - 0.021 15.0 0.0 0.026 14.7 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.26 gi|336251694|ref|YP_004598925.1| - 1.4e-28 100.1 0.1 3.7e-28 98.8 0.1 1.6 1 1 0 1 1 1 1 Universal stress protein family Flavodoxin_5 PF12724.7 gi|336251695|ref|YP_004598926.1| - 8.9e-39 133.0 0.0 1.2e-38 132.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|336251695|ref|YP_004598926.1| - 3.7e-05 24.0 0.1 6.6e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|336251695|ref|YP_004598926.1| - 0.0044 16.7 0.0 0.0086 15.8 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin domain RICTOR_V PF14668.6 gi|336251695|ref|YP_004598926.1| - 0.028 14.6 0.0 0.055 13.7 0.0 1.4 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, domain 5 PTS_IIB PF02302.17 gi|336251695|ref|YP_004598926.1| - 0.087 13.5 0.1 0.25 12.1 0.0 1.8 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit BAT PF15915.5 gi|336251696|ref|YP_004598927.1| - 9.5e-35 119.8 6.9 9.5e-35 119.8 6.9 3.3 3 1 1 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336251696|ref|YP_004598927.1| - 4.4e-21 74.4 0.0 6.2e-19 67.5 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.6 gi|336251696|ref|YP_004598927.1| - 1.2e-19 71.0 0.7 2.9e-19 69.7 0.2 2.0 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|336251696|ref|YP_004598927.1| - 1.6e-10 40.9 1.0 3.2e-10 40.0 0.0 2.0 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|336251696|ref|YP_004598927.1| - 3e-10 40.9 0.0 8.6e-10 39.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|336251696|ref|YP_004598927.1| - 7.4e-09 35.8 1.0 7.4e-09 35.8 1.0 2.5 3 0 0 3 3 2 1 PAS fold PAS_9 PF13426.7 gi|336251696|ref|YP_004598927.1| - 1.1e-08 35.3 0.0 2.7e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 gi|336251696|ref|YP_004598927.1| - 1.4e-06 28.7 0.0 7.9e-06 26.2 0.0 2.3 2 0 0 2 2 2 1 GAF domain MarR_2 PF12802.7 gi|336251696|ref|YP_004598927.1| - 0.00042 20.1 1.0 0.94 9.4 0.0 3.2 3 0 0 3 3 3 2 MarR family Sigma70_r4 PF04545.16 gi|336251696|ref|YP_004598927.1| - 0.001 18.6 1.8 0.12 11.9 0.0 3.5 5 0 0 5 5 5 1 Sigma-70, region 4 PAS_10 PF13596.6 gi|336251696|ref|YP_004598927.1| - 0.004 17.7 0.0 0.041 14.5 0.0 2.5 2 0 0 2 2 2 1 PAS domain HTH_20 PF12840.7 gi|336251696|ref|YP_004598927.1| - 0.0063 16.6 2.0 0.042 13.9 0.5 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336251696|ref|YP_004598927.1| - 0.009 15.6 0.0 0.71 9.5 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|336251696|ref|YP_004598927.1| - 0.046 13.9 0.0 2.4 8.4 0.0 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|336251696|ref|YP_004598927.1| - 0.052 13.4 0.0 0.18 11.7 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PAS_7 PF12860.7 gi|336251696|ref|YP_004598927.1| - 0.065 13.4 0.0 0.24 11.6 0.0 2.0 1 0 0 1 1 1 0 PAS fold Aminotran_5 PF00266.19 gi|336251698|ref|YP_004598929.1| - 1.8e-54 185.1 0.0 3e-54 184.4 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|336251698|ref|YP_004598929.1| - 0.00017 20.9 0.0 0.00067 18.9 0.0 1.9 2 1 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336251698|ref|YP_004598929.1| - 0.0011 18.4 0.2 0.0016 17.9 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Methyltransf_31 PF13847.6 gi|336251699|ref|YP_004598930.1| - 4.2e-13 49.4 0.0 4.9e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336251699|ref|YP_004598930.1| - 3.2e-12 46.9 0.0 4.2e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336251699|ref|YP_004598930.1| - 4.6e-12 46.5 0.0 6.2e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336251699|ref|YP_004598930.1| - 1.1e-08 35.7 0.0 1.5e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|336251699|ref|YP_004598930.1| - 2.8e-06 27.2 0.0 3.8e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|336251699|ref|YP_004598930.1| - 4.4e-06 26.4 0.0 6.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|336251699|ref|YP_004598930.1| - 4.9e-06 26.0 0.0 6e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|336251699|ref|YP_004598930.1| - 0.00031 20.3 0.0 0.0017 17.9 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.6 gi|336251699|ref|YP_004598930.1| - 0.0042 17.1 0.0 0.0057 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.11 gi|336251699|ref|YP_004598930.1| - 0.015 14.9 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_23 PF13489.6 gi|336251699|ref|YP_004598930.1| - 0.018 14.9 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|336251699|ref|YP_004598930.1| - 0.018 14.2 0.0 0.038 13.1 0.0 1.5 2 0 0 2 2 2 0 Fibrillarin PCMT PF01135.19 gi|336251699|ref|YP_004598930.1| - 0.02 14.7 0.0 0.029 14.1 0.0 1.3 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|336251699|ref|YP_004598930.1| - 0.18 11.7 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|336251699|ref|YP_004598930.1| - 0.25 10.6 0.0 0.35 10.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2892 PF11127.8 gi|336251700|ref|YP_004598931.1| - 4.1e-12 45.9 3.7 4.7e-12 45.8 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Form-deh_trans PF09163.11 gi|336251700|ref|YP_004598931.1| - 2.6 7.9 6.0 0.52 10.1 1.3 2.0 1 1 1 2 2 2 0 Formate dehydrogenase N, transmembrane Peptidase_M20 PF01546.28 gi|336251701|ref|YP_004598932.1| - 3.7e-36 124.8 0.2 4.8e-36 124.4 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|336251701|ref|YP_004598932.1| - 1.3e-16 60.4 0.0 4.7e-16 58.7 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|336251701|ref|YP_004598932.1| - 1.2e-09 38.1 0.0 1.8e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|336251701|ref|YP_004598932.1| - 0.0075 15.3 0.0 0.66 8.9 0.0 2.4 3 0 0 3 3 3 2 M42 glutamyl aminopeptidase Pyr_redox_2 PF07992.14 gi|336251702|ref|YP_004598933.1| - 2e-63 214.4 4.1 2.6e-63 214.0 4.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336251702|ref|YP_004598933.1| - 1.2e-21 77.1 4.9 4.1e-18 65.7 0.3 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336251702|ref|YP_004598933.1| - 4.9e-16 59.0 0.1 5.1e-15 55.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|336251702|ref|YP_004598933.1| - 4.6e-10 39.2 0.3 5.3e-06 25.9 0.1 2.9 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336251702|ref|YP_004598933.1| - 1.7e-09 36.9 0.4 0.031 13.0 0.0 4.1 3 1 1 4 4 4 4 HI0933-like protein NAD_binding_8 PF13450.6 gi|336251702|ref|YP_004598933.1| - 2.8e-09 37.1 0.1 0.002 18.3 0.0 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|336251702|ref|YP_004598933.1| - 3.4e-07 30.2 6.0 0.61 9.6 0.3 4.3 4 0 0 4 4 4 3 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|336251702|ref|YP_004598933.1| - 0.00011 21.6 1.3 0.055 12.7 0.1 3.0 3 1 0 3 3 3 2 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|336251702|ref|YP_004598933.1| - 0.0045 17.4 0.5 1.1 9.8 0.1 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|336251702|ref|YP_004598933.1| - 0.0049 16.3 8.0 0.14 11.5 0.0 2.9 3 1 0 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|336251702|ref|YP_004598933.1| - 0.0052 16.7 0.1 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336251702|ref|YP_004598933.1| - 0.0085 15.7 0.1 0.02 14.4 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|336251702|ref|YP_004598933.1| - 0.014 15.4 2.3 5.3 7.0 0.0 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|336251702|ref|YP_004598933.1| - 0.014 14.5 9.7 0.15 11.1 0.1 3.7 1 1 2 3 3 3 0 FAD binding domain GIDA PF01134.22 gi|336251702|ref|YP_004598933.1| - 0.029 13.5 4.0 0.5 9.4 0.1 2.7 2 1 0 3 3 3 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|336251702|ref|YP_004598933.1| - 0.059 12.7 7.0 1.2 8.3 0.1 3.9 4 0 0 4 4 4 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|336251702|ref|YP_004598933.1| - 0.079 13.2 0.2 6.5 7.1 0.1 3.0 3 0 0 3 3 3 0 TrkA-N domain FAD_binding_3 PF01494.19 gi|336251702|ref|YP_004598933.1| - 0.13 11.4 2.9 0.12 11.6 0.5 2.1 2 1 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 gi|336251702|ref|YP_004598933.1| - 0.89 8.5 4.1 12 4.8 0.0 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein DUF302 PF03625.14 gi|336251704|ref|YP_004598935.1| - 1.8e-15 56.6 0.0 3.2e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|336251705|ref|YP_004598936.1| - 1e-20 74.1 0.0 1.6e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336251705|ref|YP_004598936.1| - 2.1e-17 63.6 0.0 3.9e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336251705|ref|YP_004598936.1| - 3.1e-11 43.3 0.0 3.8e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336251705|ref|YP_004598936.1| - 1.9e-07 31.1 0.0 8.8e-07 28.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336251705|ref|YP_004598936.1| - 1.6e-06 27.7 0.0 2.4e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336251705|ref|YP_004598936.1| - 1.6e-06 28.8 0.0 2.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|336251705|ref|YP_004598936.1| - 6.5e-05 23.1 0.0 8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|336251705|ref|YP_004598936.1| - 9.8e-05 21.5 0.0 0.00012 21.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|336251705|ref|YP_004598936.1| - 0.00019 20.7 0.0 0.00029 20.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|336251705|ref|YP_004598936.1| - 0.00041 20.3 0.0 0.00094 19.1 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|336251705|ref|YP_004598936.1| - 0.015 14.9 0.0 0.063 12.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase small domain DUF5131 PF07505.11 gi|336251705|ref|YP_004598936.1| - 0.047 13.1 0.0 0.29 10.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF5131) Methyltransf_2 PF00891.18 gi|336251705|ref|YP_004598936.1| - 0.054 12.8 0.0 0.077 12.3 0.0 1.3 1 1 0 1 1 1 0 O-methyltransferase domain ADH_zinc_N_2 PF13602.6 gi|336251705|ref|YP_004598936.1| - 0.087 13.9 0.1 7.1 7.7 0.0 2.4 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_32 PF13679.6 gi|336251705|ref|YP_004598936.1| - 0.096 12.7 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|336251705|ref|YP_004598936.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Cu-oxidase_3 PF07732.15 gi|336251706|ref|YP_004598937.1| - 5e-42 142.7 0.0 1.2e-31 109.2 0.0 3.2 3 0 0 3 3 3 3 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|336251706|ref|YP_004598937.1| - 1e-32 112.8 2.6 1.2e-23 83.4 2.7 4.9 3 2 0 3 3 3 3 Multicopper oxidase Cu-oxidase PF00394.22 gi|336251706|ref|YP_004598937.1| - 3.7e-21 75.9 0.0 8e-20 71.6 0.0 2.4 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|336251706|ref|YP_004598937.1| - 0.00079 19.5 0.0 0.16 12.1 0.0 2.8 3 0 0 3 3 3 1 Cupredoxin-like domain Peptidase_A4 PF01828.17 gi|336251706|ref|YP_004598937.1| - 0.17 11.3 0.0 11 5.4 0.0 2.5 2 0 0 2 2 2 0 Peptidase A4 family DUF2243 PF10002.9 gi|336251707|ref|YP_004598938.1| - 4.2e-51 172.7 10.3 5e-51 172.5 10.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) HisKA_7TM PF16927.5 gi|336251707|ref|YP_004598938.1| - 0.24 11.4 2.9 0.36 10.8 2.9 1.4 1 1 0 1 1 1 0 N-terminal 7TM region of histidine kinase Thioredoxin_4 PF13462.6 gi|336251708|ref|YP_004598939.1| - 5.6e-26 91.7 0.0 6.6e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336251708|ref|YP_004598939.1| - 9.8e-13 48.5 0.1 2.1e-12 47.5 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|336251708|ref|YP_004598939.1| - 9.9e-13 48.3 0.3 1.2e-07 31.7 0.0 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 gi|336251708|ref|YP_004598939.1| - 0.00037 20.2 0.0 0.00062 19.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DUF2631 PF10939.8 gi|336251708|ref|YP_004598939.1| - 0.049 13.5 0.1 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) UCR_Fe-S_N PF10399.9 gi|336251708|ref|YP_004598939.1| - 0.074 12.4 0.1 0.2 11.1 0.1 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Thioredoxin PF00085.20 gi|336251708|ref|YP_004598939.1| - 0.12 12.4 0.0 0.31 11.0 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin 5_nucleotid_C PF02872.18 gi|336251709|ref|YP_004598940.1| - 1.3e-16 61.2 0.0 2.4e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|336251709|ref|YP_004598940.1| - 1e-06 29.4 0.5 1.7e-06 28.7 0.5 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Glyco_transf_4 PF13439.6 gi|336251709|ref|YP_004598940.1| - 0.015 15.3 0.0 0.07 13.1 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Cu-oxidase_2 PF07731.14 gi|336251710|ref|YP_004598941.1| - 5.4e-21 74.8 0.9 5.4e-21 74.8 0.9 2.1 2 1 0 2 2 2 1 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|336251710|ref|YP_004598941.1| - 3.8e-13 49.5 2.3 1.3e-06 28.4 0.0 3.4 2 1 1 3 3 3 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|336251710|ref|YP_004598941.1| - 0.024 14.7 0.0 0.32 11.1 0.0 2.4 1 1 0 1 1 1 0 Multicopper oxidase DUF4332 PF14229.6 gi|336251710|ref|YP_004598941.1| - 0.075 13.3 0.1 0.13 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Response_reg PF00072.24 gi|336251713|ref|YP_004598944.1| - 1.9e-13 50.6 0.0 2.5e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TrmB PF01978.19 gi|336251714|ref|YP_004598945.1| - 2.1e-06 27.5 0.0 3.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|336251714|ref|YP_004598945.1| - 2.5e-06 27.4 0.1 4.7e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336251714|ref|YP_004598945.1| - 5.9e-05 22.5 0.0 0.00011 21.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|336251714|ref|YP_004598945.1| - 0.00011 22.1 0.0 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain FUR PF01475.19 gi|336251714|ref|YP_004598945.1| - 0.00012 22.2 0.0 0.00015 21.9 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.7 gi|336251714|ref|YP_004598945.1| - 0.0014 18.4 0.1 0.0024 17.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|336251714|ref|YP_004598945.1| - 0.0033 17.2 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|336251714|ref|YP_004598945.1| - 0.0046 16.9 0.0 0.0097 15.9 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family US6 PF17616.2 gi|336251714|ref|YP_004598945.1| - 0.0067 16.4 0.0 0.0087 16.0 0.0 1.1 1 0 0 1 1 1 1 Viral unique short region 6 HTH_AsnC-type PF13404.6 gi|336251714|ref|YP_004598945.1| - 0.013 15.3 0.1 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.9 gi|336251714|ref|YP_004598945.1| - 0.016 15.3 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) ArsR PF09824.9 gi|336251714|ref|YP_004598945.1| - 0.025 14.2 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_5 PF01022.20 gi|336251714|ref|YP_004598945.1| - 0.032 14.1 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF5063 PF16702.5 gi|336251714|ref|YP_004598945.1| - 0.064 13.6 0.1 0.079 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) SCO1-SenC PF02630.14 gi|336251716|ref|YP_004598947.1| - 4.1e-19 68.8 0.0 6.2e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 gi|336251716|ref|YP_004598947.1| - 0.00055 19.9 0.0 0.00091 19.1 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336251716|ref|YP_004598947.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.5 2 0 0 2 2 2 0 Redoxin TauE PF01925.19 gi|336251717|ref|YP_004598948.1| - 1.9e-16 60.4 31.6 1.9e-16 60.4 31.6 1.5 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF4651 PF15513.6 gi|336251717|ref|YP_004598948.1| - 0.13 12.1 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) Thioredoxin PF00085.20 gi|336251718|ref|YP_004598949.1| - 3.3e-14 52.7 0.0 3.9e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|336251718|ref|YP_004598949.1| - 0.00017 21.5 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|336251718|ref|YP_004598949.1| - 0.00032 20.7 0.0 0.00042 20.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|336251718|ref|YP_004598949.1| - 0.00048 20.6 0.0 0.0099 16.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TrbC_Ftype PF09673.10 gi|336251718|ref|YP_004598949.1| - 0.013 15.5 0.0 0.015 15.3 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein OST3_OST6 PF04756.13 gi|336251718|ref|YP_004598949.1| - 0.016 14.5 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|336251718|ref|YP_004598949.1| - 0.056 13.8 0.0 0.71 10.2 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like DUF836 PF05768.14 gi|336251718|ref|YP_004598949.1| - 0.12 12.8 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) HyaE PF07449.11 gi|336251718|ref|YP_004598949.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.6 gi|336251718|ref|YP_004598949.1| - 0.19 11.9 0.0 5.4 7.2 0.0 2.1 1 1 0 2 2 2 0 Thioredoxin Pyr_redox_2 PF07992.14 gi|336251719|ref|YP_004598950.1| - 3.8e-50 170.8 0.5 5.4e-50 170.3 0.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336251719|ref|YP_004598950.1| - 1.8e-24 86.1 0.2 3.2e-24 85.3 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|336251719|ref|YP_004598950.1| - 6.1e-18 65.2 0.2 1.4e-14 54.4 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336251719|ref|YP_004598950.1| - 6.6e-08 32.2 0.1 6.7e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|336251719|ref|YP_004598950.1| - 4.4e-05 22.8 0.0 0.00012 21.4 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|336251719|ref|YP_004598950.1| - 0.0036 16.5 3.3 0.0036 16.4 1.7 1.8 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|336251719|ref|YP_004598950.1| - 0.013 15.3 0.2 0.65 9.9 0.0 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|336251719|ref|YP_004598950.1| - 0.028 14.8 0.0 0.2 12.1 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF4262 PF14081.6 gi|336251719|ref|YP_004598950.1| - 0.056 13.7 0.1 0.21 11.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4262) XdhC_C PF13478.6 gi|336251719|ref|YP_004598950.1| - 0.068 13.7 0.1 0.17 12.4 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain Bac_transf PF02397.16 gi|336251719|ref|YP_004598950.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial sugar transferase Zip PF02535.22 gi|336251720|ref|YP_004598951.1| - 6.8e-14 51.8 20.2 1.1e-11 44.5 20.3 2.9 1 1 0 1 1 1 1 ZIP Zinc transporter TrmB PF01978.19 gi|336251721|ref|YP_004598952.1| - 4.5e-16 58.5 0.0 6.2e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|336251721|ref|YP_004598952.1| - 8.8e-05 22.8 0.1 0.00012 22.4 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|336251721|ref|YP_004598952.1| - 0.00017 21.3 0.0 0.00033 20.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336251721|ref|YP_004598952.1| - 0.00025 20.9 0.0 0.00044 20.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|336251721|ref|YP_004598952.1| - 0.00031 20.6 0.5 0.00062 19.6 0.1 1.7 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|336251721|ref|YP_004598952.1| - 0.0017 17.9 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|336251721|ref|YP_004598952.1| - 0.012 15.6 0.0 0.022 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 2OG-Fe_Oxy_2 PF10014.9 gi|336251721|ref|YP_004598952.1| - 0.013 15.4 0.3 0.016 15.0 0.3 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase UMPH-1 PF05822.12 gi|336251721|ref|YP_004598952.1| - 0.024 14.1 0.2 0.034 13.7 0.2 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_23 PF13384.6 gi|336251721|ref|YP_004598952.1| - 0.046 13.5 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|336251721|ref|YP_004598952.1| - 0.049 13.5 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family RuvB_C PF05491.13 gi|336251721|ref|YP_004598952.1| - 0.05 13.5 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_27 PF13463.6 gi|336251721|ref|YP_004598952.1| - 0.058 13.9 0.0 0.098 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|336251721|ref|YP_004598952.1| - 0.066 13.6 0.0 0.2 12.0 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator DUF4423 PF14394.6 gi|336251721|ref|YP_004598952.1| - 0.08 12.7 0.1 0.21 11.3 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|336251721|ref|YP_004598952.1| - 0.088 12.7 0.4 0.13 12.1 0.4 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Rio2_N PF09202.11 gi|336251721|ref|YP_004598952.1| - 0.094 12.9 0.2 0.21 11.8 0.2 1.6 1 1 0 1 1 1 0 Rio2, N-terminal HTH_28 PF13518.6 gi|336251721|ref|YP_004598952.1| - 0.16 12.1 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TauE PF01925.19 gi|336251722|ref|YP_004598953.1| - 8.7e-39 133.6 31.9 8.7e-39 133.6 31.9 1.7 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.26 gi|336251724|ref|YP_004598955.1| - 6.3e-42 143.4 1.8 2.5e-24 86.4 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family Ion_trans_2 PF07885.16 gi|336251726|ref|YP_004598957.1| - 1.4e-07 31.4 7.8 1.4e-07 31.4 7.8 2.2 2 1 1 3 3 3 1 Ion channel SLATT_1 PF18181.1 gi|336251726|ref|YP_004598957.1| - 1.3 8.9 3.5 2.1 8.3 0.1 2.4 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 SHOCT PF09851.9 gi|336251727|ref|YP_004598958.1| - 5.1e-08 32.4 5.7 7.6e-08 31.8 5.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|336251727|ref|YP_004598958.1| - 3.2e-05 23.9 1.9 4.2e-05 23.5 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|336251727|ref|YP_004598958.1| - 0.0028 17.7 4.6 0.004 17.2 4.6 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Virul_fac_BrkB PF03631.15 gi|336251727|ref|YP_004598958.1| - 0.013 15.1 3.1 0.016 14.8 3.1 1.0 1 0 0 1 1 1 0 Virulence factor BrkB DUF4381 PF14316.6 gi|336251727|ref|YP_004598958.1| - 0.018 15.3 0.1 0.018 15.3 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) TMEM251 PF15190.6 gi|336251727|ref|YP_004598958.1| - 0.045 13.7 1.8 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Transmembrane protein 251 TMEM208_SND2 PF05620.11 gi|336251727|ref|YP_004598958.1| - 0.16 11.7 2.4 0.63 9.8 0.0 2.0 1 1 1 2 2 2 0 SRP-independent targeting protein 2/TMEM208 DUF2207 PF09972.9 gi|336251727|ref|YP_004598958.1| - 0.66 8.7 2.1 0.8 8.4 2.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tad PF13400.6 gi|336251727|ref|YP_004598958.1| - 1.9 8.9 10.7 3.9 7.9 0.3 2.6 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like FeoB_associated PF12669.7 gi|336251727|ref|YP_004598958.1| - 4.4 7.8 4.1 4.6 7.7 0.0 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF326 PF03860.16 gi|336251728|ref|YP_004598959.1| - 9.3e-06 25.4 52.0 0.0011 18.9 6.1 4.6 4 1 0 4 4 4 3 Domain of Unknown Function (DUF326) DUF2721 PF11026.8 gi|336251729|ref|YP_004598960.1| - 0.018 14.9 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) TMEM132D_C PF15706.5 gi|336251729|ref|YP_004598960.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term ATG22 PF11700.8 gi|336251729|ref|YP_004598960.1| - 0.11 11.1 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like 2TM PF13239.6 gi|336251729|ref|YP_004598960.1| - 0.18 12.1 0.1 0.21 11.9 0.1 1.2 1 0 0 1 1 1 0 2TM domain DUF1641 PF07849.11 gi|336251730|ref|YP_004598961.1| - 1.1e-15 57.1 0.6 2.6e-15 56.0 0.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|336251731|ref|YP_004598962.1| - 4.3e-24 85.3 0.1 4.8e-23 81.8 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|336251731|ref|YP_004598962.1| - 1.2e-05 25.4 0.9 0.094 12.7 0.1 2.7 2 1 1 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|336251731|ref|YP_004598962.1| - 0.066 13.8 0.2 21 5.8 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336251731|ref|YP_004598962.1| - 0.17 10.6 0.0 26 3.4 0.0 2.7 3 0 0 3 3 3 0 HI0933-like protein TusA PF01206.17 gi|336251732|ref|YP_004598963.1| - 5.6e-18 64.5 0.0 6.1e-18 64.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA SHOCT PF09851.9 gi|336251733|ref|YP_004598964.1| - 1.3e-09 37.5 5.5 1.7e-09 37.1 5.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain VbhA PF18495.1 gi|336251733|ref|YP_004598964.1| - 0.00061 19.6 1.3 0.001 18.9 1.3 1.4 1 0 0 1 1 1 1 Antitoxin VbhA DUF1707 PF08044.11 gi|336251733|ref|YP_004598964.1| - 0.00071 19.6 5.2 0.0013 18.8 5.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|336251733|ref|YP_004598964.1| - 0.0023 17.9 0.4 0.0033 17.4 0.4 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Phage_holin_2_4 PF16082.5 gi|336251733|ref|YP_004598964.1| - 0.023 14.4 3.8 0.032 14.0 2.5 1.9 1 1 0 1 1 1 0 Bacteriophage holin family, superfamily II-like DUF4381 PF14316.6 gi|336251733|ref|YP_004598964.1| - 0.074 13.3 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) ACC_epsilon PF13822.6 gi|336251733|ref|YP_004598964.1| - 0.5 11.1 4.3 1.7 9.4 0.2 2.3 2 1 0 2 2 2 0 Acyl-CoA carboxylase epsilon subunit Thioredoxin PF00085.20 gi|336251734|ref|YP_004598965.1| - 9.9e-26 89.7 0.0 1.2e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336251734|ref|YP_004598965.1| - 6.2e-08 33.1 0.3 1.2e-06 28.9 0.3 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|336251734|ref|YP_004598965.1| - 0.00015 21.6 0.4 0.00024 20.9 0.1 1.6 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.6 gi|336251734|ref|YP_004598965.1| - 0.00047 20.3 0.9 0.00065 19.8 0.1 1.6 2 0 0 2 2 1 1 Thioredoxin-like TraF PF13728.6 gi|336251734|ref|YP_004598965.1| - 0.00056 19.8 0.0 0.00095 19.0 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|336251734|ref|YP_004598965.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|336251734|ref|YP_004598965.1| - 0.0011 18.7 0.2 0.0019 18.0 0.2 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|336251734|ref|YP_004598965.1| - 0.0031 17.8 0.0 0.18 12.2 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin-like Glutaredoxin PF00462.24 gi|336251734|ref|YP_004598965.1| - 0.0032 17.6 0.1 0.0063 16.7 0.1 1.6 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.10 gi|336251734|ref|YP_004598965.1| - 0.02 14.6 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Redoxin Thioredoxin_5 PF13743.6 gi|336251734|ref|YP_004598965.1| - 0.14 11.8 0.0 0.44 10.2 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin DUF953 PF06110.11 gi|336251734|ref|YP_004598965.1| - 0.17 11.5 0.4 0.9 9.2 0.3 2.1 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) OST3_OST6 PF04756.13 gi|336251734|ref|YP_004598965.1| - 0.21 10.9 0.0 0.27 10.6 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DUF1684 PF07920.11 gi|336251735|ref|YP_004598966.1| - 1.1e-54 184.5 0.1 1.4e-54 184.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) DUF2749 PF10907.8 gi|336251735|ref|YP_004598966.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF393 PF04134.12 gi|336251737|ref|YP_004598968.1| - 1.8e-15 58.2 0.0 2e-15 58.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 PHO4 PF01384.20 gi|336251738|ref|YP_004598969.1| - 2.3e-43 148.5 30.9 2.3e-43 148.5 30.9 1.5 1 1 0 1 1 1 1 Phosphate transporter family Sulf_transp PF04143.14 gi|336251739|ref|YP_004598970.1| - 1.6e-08 34.5 6.2 1.6e-08 34.5 6.2 2.1 1 1 1 2 2 2 2 Sulphur transport Sulf_transp PF04143.14 gi|336251740|ref|YP_004598971.1| - 9.7e-14 51.6 15.3 1.5e-12 47.8 15.7 1.9 1 1 1 2 2 2 2 Sulphur transport Trp_oprn_chp PF09534.10 gi|336251740|ref|YP_004598971.1| - 1.3 8.8 8.5 0.1 12.4 2.9 2.0 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Lactamase_B PF00753.27 gi|336251741|ref|YP_004598972.1| - 1.2e-13 51.6 6.2 1.4e-13 51.3 4.8 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|336251741|ref|YP_004598972.1| - 5e-10 39.9 0.0 9.4e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|336251741|ref|YP_004598972.1| - 0.12 11.8 0.1 0.27 10.7 0.1 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Ntox46 PF15538.6 gi|336251741|ref|YP_004598972.1| - 0.21 11.6 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial toxin 46 TusA PF01206.17 gi|336251742|ref|YP_004598973.1| - 9.2e-22 76.7 0.0 1.1e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|336251742|ref|YP_004598973.1| - 0.0079 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|336251743|ref|YP_004598974.1| - 5.2e-52 175.8 0.4 6.7e-52 175.5 0.4 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|336251743|ref|YP_004598974.1| - 6.9e-07 29.6 0.0 2.7e-06 27.7 0.0 1.9 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF2937 PF11157.8 gi|336251743|ref|YP_004598974.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) HalOD1 PF18545.1 gi|336251744|ref|YP_004598975.1| - 1.9e-24 85.7 0.1 2.1e-24 85.6 0.1 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 EamA PF00892.20 gi|336251745|ref|YP_004598976.1| - 7.6e-16 58.5 17.8 8.4e-16 58.4 17.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family HalOD1 PF18545.1 gi|336251747|ref|YP_004598978.1| - 1.4e-19 70.1 0.2 1.8e-19 69.8 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_20 PF12840.7 gi|336251748|ref|YP_004598979.1| - 0.019 15.0 0.1 0.038 14.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Gcd10p PF04189.13 gi|336251748|ref|YP_004598979.1| - 0.084 12.0 0.1 0.11 11.6 0.1 1.1 1 0 0 1 1 1 0 Gcd10p family Phage_integrase PF00589.22 gi|336251749|ref|YP_004598980.1| - 2.8e-05 24.0 0.0 6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015667.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015667.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015667.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015667.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:33:39 2019 # [ok]