# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- AAA PF00004.24 gi|313124789|ref|YP_004035053.1| - 4.6e-12 46.2 0.0 1.1e-11 45.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|313124789|ref|YP_004035053.1| - 6.1e-10 38.9 0.0 1e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|313124789|ref|YP_004035053.1| - 3.2e-09 36.6 0.0 7.6e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|313124789|ref|YP_004035053.1| - 8.8e-08 32.3 0.0 4.7e-07 30.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|313124789|ref|YP_004035053.1| - 2.6e-07 30.6 0.0 6.1e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313124789|ref|YP_004035053.1| - 4e-06 26.9 1.1 0.00019 21.5 0.0 2.9 1 1 1 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|313124789|ref|YP_004035053.1| - 0.0001 21.8 0.0 0.003 17.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|313124789|ref|YP_004035053.1| - 0.00022 20.9 0.9 0.00094 18.9 0.1 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|313124789|ref|YP_004035053.1| - 0.00057 19.5 0.0 0.002 17.8 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_24 PF13479.1 gi|313124789|ref|YP_004035053.1| - 0.00069 19.2 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313124789|ref|YP_004035053.1| - 0.0012 19.1 0.0 0.003 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|313124789|ref|YP_004035053.1| - 0.0017 18.0 0.0 0.0053 16.4 0.0 1.8 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.12 gi|313124789|ref|YP_004035053.1| - 0.0027 17.1 0.0 0.0079 15.6 0.0 1.8 1 1 1 2 2 2 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|313124789|ref|YP_004035053.1| - 0.0049 16.6 0.0 2.1 8.0 0.0 3.0 3 0 0 3 3 3 1 NTPase Mg_chelatase PF01078.16 gi|313124789|ref|YP_004035053.1| - 0.0054 15.9 0.0 0.0098 15.0 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|313124789|ref|YP_004035053.1| - 0.0058 17.4 0.1 0.017 15.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|313124789|ref|YP_004035053.1| - 0.0081 14.8 0.0 0.33 9.5 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein Sigma54_activ_2 PF14532.1 gi|313124789|ref|YP_004035053.1| - 0.01 15.8 0.0 0.12 12.4 0.0 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|313124789|ref|YP_004035053.1| - 0.02 14.4 0.1 0.032 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|313124789|ref|YP_004035053.1| - 0.021 13.9 0.0 0.053 12.6 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|313124789|ref|YP_004035053.1| - 0.034 14.4 0.0 0.096 12.9 0.0 1.9 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|313124789|ref|YP_004035053.1| - 0.048 13.0 0.0 4.1 6.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|313124789|ref|YP_004035053.1| - 0.049 13.5 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|313124789|ref|YP_004035053.1| - 0.051 13.7 0.0 0.22 11.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Bac_DnaA PF00308.13 gi|313124789|ref|YP_004035053.1| - 0.057 13.0 0.0 15 5.1 0.0 2.8 3 1 0 3 3 3 0 Bacterial dnaA protein AAA_2 PF07724.9 gi|313124789|ref|YP_004035053.1| - 0.059 13.2 0.0 0.14 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|313124789|ref|YP_004035053.1| - 0.081 12.7 0.1 0.21 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313124789|ref|YP_004035053.1| - 0.13 11.1 0.0 0.81 8.4 0.0 2.0 1 1 0 1 1 1 0 NB-ARC domain DNA_pol3_delta PF06144.8 gi|313124789|ref|YP_004035053.1| - 0.15 11.5 0.0 0.38 10.2 0.0 1.7 2 0 0 2 2 2 0 DNA polymerase III, delta subunit PS_Dcarbxylase PF02666.10 gi|313124790|ref|YP_004035054.1| - 9.9e-27 93.5 0.0 8.3e-24 84.0 0.0 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase ACC_central PF08326.7 gi|313124790|ref|YP_004035054.1| - 0.13 10.3 0.0 0.16 10.0 0.0 1.0 1 0 0 1 1 1 0 Acetyl-CoA carboxylase, central region MitoNEET_N PF10660.4 gi|313124791|ref|YP_004035055.1| - 0.016 15.0 0.8 0.016 15.0 0.6 2.0 1 1 1 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF4117 PF13491.1 gi|313124792|ref|YP_004035056.1| - 0.23 10.9 8.6 0.12 11.7 4.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4117) DUF1772 PF08592.6 gi|313124792|ref|YP_004035056.1| - 4.9 6.8 9.1 1.4 8.6 2.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) UPF0020 PF01170.13 gi|313124793|ref|YP_004035057.1| - 1e-24 87.0 0.0 1.5e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|313124793|ref|YP_004035057.1| - 4.3e-13 49.3 0.9 4.3e-13 49.3 0.6 2.3 2 1 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|313124793|ref|YP_004035057.1| - 2.4e-05 24.2 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_18 PF12847.2 gi|313124793|ref|YP_004035057.1| - 0.00032 21.2 0.2 0.00032 21.2 0.1 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313124793|ref|YP_004035057.1| - 0.00066 20.1 0.0 0.0014 19.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313124793|ref|YP_004035057.1| - 0.0049 16.4 0.0 0.0075 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|313124793|ref|YP_004035057.1| - 0.0099 15.2 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 2-Hacid_dh PF00389.25 gi|313124793|ref|YP_004035057.1| - 0.053 12.9 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Methyltransf_15 PF09445.5 gi|313124793|ref|YP_004035057.1| - 0.059 12.9 0.0 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|313124793|ref|YP_004035057.1| - 0.064 13.6 0.0 0.19 12.0 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DUF2784 PF10861.3 gi|313124794|ref|YP_004035058.1| - 0.013 15.2 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF2784) TBP PF00352.16 gi|313124795|ref|YP_004035059.1| - 1.4e-63 210.2 0.0 6.1e-31 105.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|313124795|ref|YP_004035059.1| - 0.0056 16.7 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|313124795|ref|YP_004035059.1| - 0.038 13.2 0.6 8.9 5.7 0.0 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 PucR PF07905.6 gi|313124795|ref|YP_004035059.1| - 0.12 11.9 0.0 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family DAD PF02109.11 gi|313124796|ref|YP_004035060.1| - 0.27 11.2 4.8 0.068 13.2 0.6 1.9 1 1 1 2 2 2 0 DAD family DctQ PF04290.7 gi|313124796|ref|YP_004035060.1| - 0.46 10.2 6.2 0.7 9.6 4.3 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component AA_permease_C PF13906.1 gi|313124796|ref|YP_004035060.1| - 6.4 6.7 6.7 1.7 8.5 1.0 2.5 3 0 0 3 3 3 0 C-terminus of AA_permease Abi PF02517.11 gi|313124797|ref|YP_004035061.1| - 1.5e-13 50.6 3.8 1.5e-13 50.6 2.6 3.7 2 1 0 3 3 3 1 CAAX protease self-immunity p12I PF12233.3 gi|313124797|ref|YP_004035061.1| - 0.069 13.4 4.3 0.064 13.5 1.7 1.9 2 0 0 2 2 2 0 Human adult T cell leukemia/lymphoma virus protein DUF3094 PF11293.3 gi|313124797|ref|YP_004035061.1| - 0.49 9.9 4.6 0.35 10.3 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) Amastin PF07344.6 gi|313124797|ref|YP_004035061.1| - 4.7 6.8 9.6 0.21 11.1 1.8 2.1 2 0 0 2 2 2 0 Amastin surface glycoprotein HisG PF01634.13 gi|313124798|ref|YP_004035062.1| - 1.4e-49 167.8 0.2 2e-49 167.3 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|313124798|ref|YP_004035062.1| - 3.1e-28 97.5 0.1 7.2e-28 96.3 0.1 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|313124798|ref|YP_004035062.1| - 0.002 17.7 0.0 2 7.9 0.0 2.2 1 1 1 2 2 2 2 NMT1/THI5 like DUF881 PF05949.7 gi|313124798|ref|YP_004035062.1| - 0.066 12.6 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) HTH_20 PF12840.2 gi|313124799|ref|YP_004035063.1| - 4.9e-09 35.8 3.6 6.8e-07 29.0 0.5 2.5 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|313124799|ref|YP_004035063.1| - 2e-08 33.5 0.0 3.3e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313124799|ref|YP_004035063.1| - 4e-07 29.5 0.0 0.00045 19.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313124799|ref|YP_004035063.1| - 3.2e-06 26.6 0.6 0.012 15.3 0.2 2.5 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|313124799|ref|YP_004035063.1| - 4.3e-06 26.3 0.1 0.00018 21.1 0.0 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|313124799|ref|YP_004035063.1| - 1.8e-05 24.3 0.0 0.00026 20.6 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|313124799|ref|YP_004035063.1| - 0.00011 22.2 0.0 0.0021 18.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313124799|ref|YP_004035063.1| - 0.00045 19.7 0.4 0.0054 16.2 0.1 2.5 2 1 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313124799|ref|YP_004035063.1| - 0.012 15.4 0.0 0.048 13.6 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|313124799|ref|YP_004035063.1| - 0.066 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|313124799|ref|YP_004035063.1| - 0.096 12.2 0.0 0.75 9.4 0.0 2.4 3 0 0 3 3 3 0 HTH DNA binding domain Penicillinase_R PF03965.11 gi|313124799|ref|YP_004035063.1| - 0.13 12.3 0.0 7.3 6.7 0.0 2.2 1 1 1 2 2 2 0 Penicillinase repressor Amidohydro_1 PF01979.15 gi|313124800|ref|YP_004035064.1| - 7.4e-50 170.4 5.1 9.2e-50 170.1 3.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313124800|ref|YP_004035064.1| - 6.3e-14 52.6 17.2 1.1e-13 51.8 11.9 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|313124800|ref|YP_004035064.1| - 4.1e-13 48.9 0.9 2e-12 46.7 0.1 2.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313124800|ref|YP_004035064.1| - 9.2e-12 44.8 17.2 1.6e-10 40.7 7.1 2.2 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|313124800|ref|YP_004035064.1| - 5.4e-05 22.2 0.0 0.00013 21.0 0.0 1.5 1 1 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.16 gi|313124800|ref|YP_004035064.1| - 0.022 13.9 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase AdoHcyase PF05221.12 gi|313124801|ref|YP_004035065.1| - 8.8e-53 178.9 0.1 1.1e-52 178.5 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|313124801|ref|YP_004035065.1| - 1.4e-48 164.8 1.1 2e-48 164.2 0.4 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|313124801|ref|YP_004035065.1| - 2e-10 40.1 0.2 3.5e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|313124801|ref|YP_004035065.1| - 2.5e-06 26.9 1.2 5.3e-06 25.8 0.1 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|313124801|ref|YP_004035065.1| - 0.013 15.5 0.1 0.028 14.4 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain DUF3921 PF13060.1 gi|313124801|ref|YP_004035065.1| - 0.063 13.1 1.9 0.19 11.6 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3921) Hjc PF01870.13 gi|313124803|ref|YP_004035067.1| - 6e-28 96.2 0.0 7.4e-28 95.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.16 gi|313124803|ref|YP_004035067.1| - 0.04 13.8 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 NHL repeat zf-ribbon_3 PF13248.1 gi|313124804|ref|YP_004035068.1| - 0.0033 16.5 1.7 0.017 14.3 1.2 2.0 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313124804|ref|YP_004035068.1| - 0.0075 15.9 0.2 1.1 9.0 0.0 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 Yippee-Mis18 PF03226.9 gi|313124804|ref|YP_004035068.1| - 0.011 15.7 1.5 1.3 9.0 0.0 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2082 PF09855.4 gi|313124804|ref|YP_004035068.1| - 0.013 15.3 0.7 0.016 15.0 0.5 1.1 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DNA_ligase_ZBD PF03119.11 gi|313124804|ref|YP_004035068.1| - 0.039 13.6 0.1 0.039 13.6 0.1 1.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF164 PF02591.10 gi|313124804|ref|YP_004035068.1| - 0.046 13.5 2.2 3.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain UPF0547 PF10571.4 gi|313124804|ref|YP_004035068.1| - 0.054 13.1 1.0 0.41 10.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|313124804|ref|YP_004035068.1| - 0.065 13.5 2.3 0.74 10.1 1.6 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.8 gi|313124804|ref|YP_004035068.1| - 0.071 12.6 2.0 0.1 12.1 0.3 1.9 2 0 0 2 2 2 0 InsA N-terminal domain CpXC PF14353.1 gi|313124804|ref|YP_004035068.1| - 0.08 12.9 1.2 0.33 10.9 0.8 1.8 1 1 0 1 1 1 0 CpXC protein zinc-ribbons_6 PF07191.7 gi|313124804|ref|YP_004035068.1| - 0.14 11.9 1.8 0.48 10.2 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|313124804|ref|YP_004035068.1| - 0.15 11.9 2.0 0.58 10.0 1.4 1.9 1 1 0 1 1 1 0 Double zinc ribbon Tospo_nucleocap PF01533.11 gi|313124804|ref|YP_004035068.1| - 0.15 11.2 0.0 0.16 11.2 0.0 1.0 1 0 0 1 1 1 0 Tospovirus nucleocapsid protein zf-C2HC5 PF06221.8 gi|313124804|ref|YP_004035068.1| - 0.31 10.8 1.7 9.6 6.0 0.1 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C2H2_3 PF13878.1 gi|313124804|ref|YP_004035068.1| - 0.59 9.7 3.8 0.75 9.4 0.1 2.2 2 1 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-TFIIB PF13453.1 gi|313124804|ref|YP_004035068.1| - 0.85 8.8 3.9 6.4 6.0 2.8 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|313124804|ref|YP_004035068.1| - 2.8 7.3 5.6 2.1 7.7 0.8 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|313124805|ref|YP_004035069.1| - 0.0065 16.1 1.6 0.084 12.5 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|313124805|ref|YP_004035069.1| - 0.0069 15.5 1.2 1.3 8.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|313124805|ref|YP_004035069.1| - 0.012 15.7 0.1 0.82 9.8 0.0 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain Prok-RING_1 PF14446.1 gi|313124805|ref|YP_004035069.1| - 0.015 15.0 0.9 2.7 7.8 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Lar_restr_allev PF14354.1 gi|313124805|ref|YP_004035069.1| - 0.031 14.5 2.1 0.18 12.1 1.5 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2082 PF09855.4 gi|313124805|ref|YP_004035069.1| - 0.067 13.0 0.5 0.096 12.5 0.4 1.3 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DZR PF12773.2 gi|313124805|ref|YP_004035069.1| - 0.086 12.6 1.1 0.34 10.7 0.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|313124805|ref|YP_004035069.1| - 0.09 12.3 0.4 7 6.2 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.1 gi|313124805|ref|YP_004035069.1| - 0.11 12.0 1.2 8.4 6.0 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|313124805|ref|YP_004035069.1| - 0.15 11.8 0.9 0.49 10.2 0.7 1.8 1 1 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|313124805|ref|YP_004035069.1| - 0.19 11.4 0.4 0.19 11.4 0.3 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.14 gi|313124805|ref|YP_004035069.1| - 0.4 10.2 2.0 5.1 6.6 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger SWIM PF04434.12 gi|313124806|ref|YP_004035070.1| - 0.00011 21.6 0.0 0.00019 20.8 0.0 1.4 1 0 0 1 1 1 1 SWIM zinc finger ERM PF00769.14 gi|313124807|ref|YP_004035071.1| - 0.77 9.2 11.5 1.7 8.1 7.6 1.8 1 1 0 1 1 1 0 Ezrin/radixin/moesin family TetR_N PF00440.18 gi|313124807|ref|YP_004035071.1| - 1.8 8.2 4.0 13 5.5 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family Big_1 PF02369.11 gi|313124808|ref|YP_004035072.1| - 0.61 10.0 4.4 0.78 9.6 0.2 2.6 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) Gram_pos_anchor PF00746.16 gi|313124808|ref|YP_004035072.1| - 2.7 7.9 9.5 0.15 11.8 0.6 2.4 2 0 0 2 2 2 0 Gram positive anchor DUF2975 PF11188.3 gi|313124810|ref|YP_004035074.1| - 0.19 11.4 2.3 0.2 11.4 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Tmemb_161AB PF10268.4 gi|313124810|ref|YP_004035074.1| - 0.35 9.3 1.4 0.36 9.2 1.0 1.0 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB PepSY_TM_2 PF13703.1 gi|313124810|ref|YP_004035074.1| - 4.5 7.5 14.1 4.4 7.5 1.2 2.0 1 1 1 2 2 2 0 PepSY-associated TM helix DNA_primase_lrg PF04104.9 gi|313124811|ref|YP_004035075.1| - 1.3e-17 63.9 0.0 6.6e-17 61.6 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|313124814|ref|YP_004035078.1| - 2.4e-10 40.0 3.2 2.6e-10 39.8 0.4 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|313124814|ref|YP_004035078.1| - 1.2e-08 34.9 0.0 1.9e-07 31.0 0.0 2.4 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.10 gi|313124814|ref|YP_004035078.1| - 0.021 14.3 0.6 0.074 12.6 0.2 2.0 2 1 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain Rad9 PF04139.8 gi|313124814|ref|YP_004035078.1| - 0.045 12.8 0.0 0.064 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad9 Daxx PF03344.10 gi|313124815|ref|YP_004035079.1| - 3.6 5.9 11.3 3.9 5.8 7.8 1.0 1 0 0 1 1 1 0 Daxx Family PepSY_2 PF13670.1 gi|313124816|ref|YP_004035080.1| - 0.076 12.9 0.4 0.082 12.8 0.2 1.2 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain PilX_N PF14341.1 gi|313124816|ref|YP_004035080.1| - 1.4 8.6 5.8 1.9 8.2 3.9 1.5 1 1 0 1 1 1 0 PilX N-terminal VacA2 PF03077.9 gi|313124816|ref|YP_004035080.1| - 5.7 6.6 8.5 7.4 6.2 2.5 2.2 1 1 1 2 2 2 0 Putative vacuolating cytotoxin Peptidase_C25_C PF03785.9 gi|313124818|ref|YP_004035082.1| - 0.12 12.1 1.9 0.14 11.9 1.3 1.2 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain DUF4044 PF13253.1 gi|313124820|ref|YP_004035084.1| - 0.72 9.0 2.6 0.98 8.6 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) TraB PF01963.12 gi|313124821|ref|YP_004035085.1| - 7.5e-32 110.7 0.1 6.8e-19 68.3 0.0 2.2 2 0 0 2 2 2 2 TraB family bPH_6 PF10756.4 gi|313124821|ref|YP_004035085.1| - 0.78 9.6 5.1 0.22 11.4 0.4 2.5 3 0 0 3 3 3 0 Bacterial PH domain HTH_20 PF12840.2 gi|313124822|ref|YP_004035086.1| - 0.00028 20.6 0.0 0.003 17.3 0.0 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain FtsJ PF01728.14 gi|313124823|ref|YP_004035087.1| - 7.9e-55 185.6 0.0 2e-54 184.3 0.0 1.6 2 0 0 2 2 2 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|313124823|ref|YP_004035087.1| - 1.8e-12 46.8 0.8 4.4e-12 45.6 0.6 1.7 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|313124823|ref|YP_004035087.1| - 4.3e-05 23.1 0.0 0.00019 21.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313124823|ref|YP_004035087.1| - 0.00011 22.1 0.1 0.00027 20.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313124823|ref|YP_004035087.1| - 0.00044 20.0 0.0 0.0012 18.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313124823|ref|YP_004035087.1| - 0.0071 16.9 0.3 0.031 14.8 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|313124823|ref|YP_004035087.1| - 0.014 14.7 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase NSP13 PF06460.7 gi|313124823|ref|YP_004035087.1| - 0.17 10.7 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP13 OrfB_IS605 PF01385.14 gi|313124824|ref|YP_004035088.1| - 3.6e-45 154.1 0.0 4.9e-45 153.6 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313124824|ref|YP_004035088.1| - 2.8e-23 81.3 1.9 5.9e-23 80.3 1.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|313124824|ref|YP_004035088.1| - 0.19 11.7 2.7 0.5 10.4 1.9 1.8 1 0 0 1 1 1 0 C1-like domain Ribosomal_L37ae PF01780.14 gi|313124824|ref|YP_004035088.1| - 0.39 10.6 2.8 0.53 10.1 0.4 2.2 2 0 0 2 2 2 0 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.7 gi|313124824|ref|YP_004035088.1| - 6.6 6.1 8.2 24 4.3 1.3 2.9 1 1 1 2 2 2 0 TFIIB zinc-binding DUF165 PF02592.10 gi|313124825|ref|YP_004035089.1| - 4.7e-40 137.1 4.0 4.7e-40 137.1 2.8 1.5 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 RHH_1 PF01402.16 gi|313124826|ref|YP_004035090.1| - 0.00043 20.0 0.8 0.0011 18.7 0.1 2.0 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family DUF1515 PF07439.6 gi|313124826|ref|YP_004035090.1| - 0.095 12.5 0.2 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF2120 PF09893.4 gi|313124826|ref|YP_004035090.1| - 0.13 12.1 0.2 0.15 12.0 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) TatC PF00902.13 gi|313124827|ref|YP_004035091.1| - 3.5e-66 222.7 40.1 3.1e-36 124.8 8.9 2.4 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) CcmH PF03918.9 gi|313124827|ref|YP_004035091.1| - 0.096 11.6 1.0 4.6 6.2 0.0 2.8 2 0 0 2 2 2 0 Cytochrome C biogenesis protein TatC PF00902.13 gi|313124828|ref|YP_004035092.1| - 1.4e-35 122.6 14.7 1.7e-35 122.3 10.2 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Asn_synthase PF00733.16 gi|313124829|ref|YP_004035093.1| - 3e-11 43.3 0.1 5.2e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|313124829|ref|YP_004035093.1| - 8.8e-10 37.6 0.0 1e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|313124829|ref|YP_004035093.1| - 6.3e-09 35.0 0.0 1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|313124829|ref|YP_004035093.1| - 2.2e-05 23.8 0.0 0.00028 20.2 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.14 gi|313124829|ref|YP_004035093.1| - 0.00058 19.0 0.0 0.0015 17.6 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase ATP_bind_3 PF01171.15 gi|313124829|ref|YP_004035093.1| - 0.001 18.6 0.0 0.0061 16.0 0.0 2.2 1 1 0 1 1 1 1 PP-loop family DUF208 PF02677.9 gi|313124829|ref|YP_004035093.1| - 0.018 14.8 0.1 0.049 13.4 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized BCR, COG1636 MutS_V PF00488.16 gi|313124830|ref|YP_004035094.1| - 3.7e-09 36.3 0.0 6.8e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|313124830|ref|YP_004035094.1| - 0.00022 20.7 1.0 0.0037 16.8 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|313124830|ref|YP_004035094.1| - 0.00032 20.8 2.8 0.00032 20.8 1.9 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_29 PF13555.1 gi|313124830|ref|YP_004035094.1| - 0.1 12.1 0.1 0.24 10.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3980 PF13140.1 gi|313124831|ref|YP_004035095.1| - 0.15 12.3 2.1 0.2 11.9 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3980) AAA_16 PF13191.1 gi|313124832|ref|YP_004035096.1| - 4.8e-13 49.4 0.4 2.4e-12 47.2 0.3 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313124832|ref|YP_004035096.1| - 2.6e-08 34.0 0.0 5.5e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|313124832|ref|YP_004035096.1| - 1.6e-06 27.7 0.1 6.8e-06 25.7 0.0 2.1 2 0 0 2 2 1 1 CDC6, C terminal AAA PF00004.24 gi|313124832|ref|YP_004035096.1| - 6.9e-05 23.0 0.0 0.0002 21.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|313124832|ref|YP_004035096.1| - 0.00012 21.7 0.3 0.00029 20.5 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|313124832|ref|YP_004035096.1| - 0.00019 21.2 0.0 0.00034 20.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|313124832|ref|YP_004035096.1| - 0.0012 18.7 0.0 0.0021 17.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|313124832|ref|YP_004035096.1| - 0.0018 17.9 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|313124832|ref|YP_004035096.1| - 0.0024 17.5 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|313124832|ref|YP_004035096.1| - 0.0025 17.7 0.0 0.01 15.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313124832|ref|YP_004035096.1| - 0.0048 17.7 0.8 0.014 16.1 0.2 2.3 1 1 1 2 2 2 1 AAA domain T2SE PF00437.15 gi|313124832|ref|YP_004035096.1| - 0.0085 15.0 0.0 0.015 14.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|313124832|ref|YP_004035096.1| - 0.0094 15.3 0.1 4.5 6.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_35 PF14516.1 gi|313124832|ref|YP_004035096.1| - 0.011 14.4 0.0 0.35 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|313124832|ref|YP_004035096.1| - 0.012 15.8 0.0 0.028 14.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|313124832|ref|YP_004035096.1| - 0.015 14.9 0.1 0.03 14.0 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.1 gi|313124832|ref|YP_004035096.1| - 0.016 14.7 0.2 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|313124832|ref|YP_004035096.1| - 0.03 13.7 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|313124832|ref|YP_004035096.1| - 0.066 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.9 gi|313124832|ref|YP_004035096.1| - 0.069 12.8 0.0 0.19 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|313124832|ref|YP_004035096.1| - 0.09 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|313124832|ref|YP_004035096.1| - 0.096 12.6 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|313124832|ref|YP_004035096.1| - 0.11 11.9 0.0 0.42 10.1 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|313124832|ref|YP_004035096.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.7 2 0 0 2 2 2 0 ABC transporter Rad17 PF03215.10 gi|313124832|ref|YP_004035096.1| - 0.13 10.9 0.0 0.21 10.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|313124832|ref|YP_004035096.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|313124832|ref|YP_004035096.1| - 0.18 10.7 0.0 0.32 9.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rib_5-P_isom_A PF06026.9 gi|313124833|ref|YP_004035097.1| - 2.2e-60 202.9 0.1 2.6e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|313124833|ref|YP_004035097.1| - 2.1e-07 30.7 0.9 2.5e-05 23.9 0.1 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain YcxB PF14317.1 gi|313124834|ref|YP_004035098.1| - 0.00046 19.3 0.0 0.00081 18.5 0.0 1.4 1 0 0 1 1 1 1 YcxB-like protein DUF555 PF04475.7 gi|313124834|ref|YP_004035098.1| - 0.14 12.1 0.2 6.8 6.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF555) DUF1931 PF09123.6 gi|313124835|ref|YP_004035099.1| - 7.3e-05 22.7 1.0 7.7e-05 22.6 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|313124835|ref|YP_004035099.1| - 0.00036 20.5 0.1 0.00057 19.8 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|313124835|ref|YP_004035099.1| - 0.00053 20.0 0.1 0.00069 19.6 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 SBP_bac_7 PF03480.8 gi|313124835|ref|YP_004035099.1| - 0.0087 15.1 0.1 0.0089 15.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 OmdA PF13376.1 gi|313124835|ref|YP_004035099.1| - 0.069 12.8 0.3 0.1 12.2 0.1 1.4 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Peptidase_M41 PF01434.13 gi|313124835|ref|YP_004035099.1| - 0.078 12.4 0.1 0.082 12.3 0.1 1.0 1 0 0 1 1 1 0 Peptidase family M41 AIRC PF00731.15 gi|313124836|ref|YP_004035100.1| - 2.9e-17 62.3 9.3 6.6e-17 61.1 3.6 2.1 2 0 0 2 2 2 2 AIR carboxylase TRSP PF12500.3 gi|313124836|ref|YP_004035100.1| - 0.11 11.9 0.3 0.19 11.2 0.2 1.4 1 0 0 1 1 1 0 TRSP domain C terminus to PRTase_2 DZR PF12773.2 gi|313124837|ref|YP_004035101.1| - 0.0027 17.5 0.5 0.0036 17.1 0.3 1.3 1 1 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|313124837|ref|YP_004035101.1| - 0.0046 16.7 0.3 0.014 15.1 0.2 1.7 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|313124837|ref|YP_004035101.1| - 0.0047 16.0 2.5 0.37 10.0 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313124837|ref|YP_004035101.1| - 0.0069 16.0 0.5 0.0094 15.5 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|313124837|ref|YP_004035101.1| - 0.022 14.2 2.3 0.11 12.0 1.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|313124837|ref|YP_004035101.1| - 0.026 14.2 0.3 0.81 9.4 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.1 gi|313124837|ref|YP_004035101.1| - 0.054 13.8 1.0 0.069 13.4 0.7 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|313124837|ref|YP_004035101.1| - 0.056 13.1 3.4 1 9.0 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger C1_1 PF00130.17 gi|313124837|ref|YP_004035101.1| - 0.066 12.9 0.2 0.094 12.4 0.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4_Topoisom PF01396.14 gi|313124837|ref|YP_004035101.1| - 0.07 12.6 0.1 4.3 6.9 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger ATPase-cat_bd PF12156.3 gi|313124837|ref|YP_004035101.1| - 0.072 13.6 0.4 0.075 13.5 0.3 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase zf-ISL3 PF14690.1 gi|313124837|ref|YP_004035101.1| - 0.085 12.9 0.4 9.6 6.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|313124837|ref|YP_004035101.1| - 0.087 12.5 2.3 0.38 10.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313124837|ref|YP_004035101.1| - 0.11 12.0 2.5 0.45 10.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNL PF05180.7 gi|313124837|ref|YP_004035101.1| - 0.12 12.0 0.6 0.17 11.6 0.4 1.3 1 1 0 1 1 1 0 DNL zinc finger Zn-ribbon_8 PF09723.5 gi|313124837|ref|YP_004035101.1| - 0.2 11.6 3.9 3.7 7.5 2.5 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|313124837|ref|YP_004035101.1| - 0.2 11.3 1.5 1.4 8.6 1.1 2.1 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|313124837|ref|YP_004035101.1| - 0.22 11.3 3.8 3.2 7.6 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|313124837|ref|YP_004035101.1| - 0.37 10.3 2.5 4.1 6.9 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF35_N PF12172.3 gi|313124837|ref|YP_004035101.1| - 0.38 10.7 2.9 14 5.7 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF164 PF02591.10 gi|313124837|ref|YP_004035101.1| - 0.48 10.2 5.0 2.8 7.8 2.0 2.5 1 1 1 2 2 2 0 Putative zinc ribbon domain UPF0547 PF10571.4 gi|313124837|ref|YP_004035101.1| - 2.3 7.9 7.2 5.1 6.8 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.7 gi|313124837|ref|YP_004035101.1| - 8.1 6.6 6.2 24 5.1 0.3 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase SurE PF01975.12 gi|313124838|ref|YP_004035102.1| - 1.5e-45 154.9 0.0 1.9e-45 154.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE GIY-YIG PF01541.19 gi|313124839|ref|YP_004035103.1| - 3e-12 46.7 0.0 3.4e-12 46.5 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|313124839|ref|YP_004035103.1| - 0.0046 17.3 0.1 0.0055 17.0 0.1 1.2 1 0 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|313124839|ref|YP_004035103.1| - 0.13 12.7 0.1 0.21 12.0 0.1 1.6 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 FMN_red PF03358.10 gi|313124840|ref|YP_004035104.1| - 1e-33 115.9 0.0 1.3e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|313124840|ref|YP_004035104.1| - 1.8e-08 34.1 0.0 3.4e-08 33.2 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|313124840|ref|YP_004035104.1| - 0.016 15.1 0.0 0.033 14.2 0.0 1.5 2 0 0 2 2 2 0 Flavodoxin domain PGM_PMM_I PF02878.11 gi|313124841|ref|YP_004035105.1| - 3.2e-37 127.0 0.0 5.6e-37 126.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|313124841|ref|YP_004035105.1| - 6.3e-26 90.7 0.1 1.3e-25 89.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|313124841|ref|YP_004035105.1| - 6.7e-23 80.8 0.0 1.2e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|313124841|ref|YP_004035105.1| - 5e-13 48.8 1.1 9.4e-13 47.9 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acetyltransf_7 PF13508.1 gi|313124842|ref|YP_004035106.1| - 7e-11 42.1 0.0 9.2e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313124842|ref|YP_004035106.1| - 1.5e-09 37.9 0.2 1.9e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313124842|ref|YP_004035106.1| - 2e-09 37.3 0.1 4e-09 36.4 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313124842|ref|YP_004035106.1| - 6.1e-08 32.5 0.3 1.7e-07 31.1 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family DUF3749 PF12568.3 gi|313124842|ref|YP_004035106.1| - 3.4e-05 23.4 2.3 4.4e-05 23.0 1.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313124842|ref|YP_004035106.1| - 0.017 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|313124842|ref|YP_004035106.1| - 0.04 13.8 0.5 0.11 12.4 0.1 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|313124842|ref|YP_004035106.1| - 0.045 13.4 0.1 0.088 12.5 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase FR47 PF08445.5 gi|313124842|ref|YP_004035106.1| - 0.05 13.3 0.1 0.11 12.2 0.1 1.6 2 0 0 2 2 2 0 FR47-like protein Amidohydro_2 PF04909.9 gi|313124842|ref|YP_004035106.1| - 0.17 11.4 0.8 0.2 11.1 0.5 1.2 1 0 0 1 1 1 0 Amidohydrolase AhpC-TSA PF00578.16 gi|313124843|ref|YP_004035107.1| - 1.4e-17 63.5 0.0 1.7e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313124843|ref|YP_004035107.1| - 6.5e-08 32.2 0.0 8.2e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|313124843|ref|YP_004035107.1| - 0.031 14.1 0.0 0.051 13.5 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.1 gi|313124843|ref|YP_004035107.1| - 0.065 13.3 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Rep_fac_C PF08542.6 gi|313124845|ref|YP_004035109.1| - 6.5e-23 80.5 0.0 1.5e-22 79.3 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|313124845|ref|YP_004035109.1| - 1.1e-18 67.4 0.0 3.4e-16 59.3 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|313124845|ref|YP_004035109.1| - 6.5e-18 65.2 0.0 5.6e-16 58.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|313124845|ref|YP_004035109.1| - 1.2e-08 34.1 0.0 0.00024 19.9 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|313124845|ref|YP_004035109.1| - 1.5e-08 33.9 0.0 1.6e-07 30.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|313124845|ref|YP_004035109.1| - 6.7e-08 32.7 0.7 2.8e-05 24.1 0.0 3.1 1 1 1 3 3 3 1 AAA ATPase domain DNA_pol3_delta PF06144.8 gi|313124845|ref|YP_004035109.1| - 1.4e-07 31.1 0.0 3.5e-07 29.8 0.0 1.6 2 0 0 2 2 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|313124845|ref|YP_004035109.1| - 9.3e-07 29.0 0.1 0.069 13.2 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|313124845|ref|YP_004035109.1| - 5e-06 26.4 0.0 9.7e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313124845|ref|YP_004035109.1| - 3.7e-05 23.2 0.2 0.00033 20.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|313124845|ref|YP_004035109.1| - 0.00092 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|313124845|ref|YP_004035109.1| - 0.0012 18.2 0.0 0.0028 17.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein ResIII PF04851.10 gi|313124845|ref|YP_004035109.1| - 0.0016 18.3 0.0 0.0035 17.2 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|313124845|ref|YP_004035109.1| - 0.0018 17.9 0.0 0.022 14.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|313124845|ref|YP_004035109.1| - 0.002 18.9 0.2 0.0047 17.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|313124845|ref|YP_004035109.1| - 0.0033 16.9 0.0 0.23 10.9 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|313124845|ref|YP_004035109.1| - 0.0033 16.5 0.0 0.39 9.8 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|313124845|ref|YP_004035109.1| - 0.0083 14.8 0.0 0.55 8.8 0.0 2.5 2 1 1 3 3 3 1 TIP49 C-terminus AAA_19 PF13245.1 gi|313124845|ref|YP_004035109.1| - 0.016 14.9 0.0 0.054 13.2 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_29 PF13555.1 gi|313124845|ref|YP_004035109.1| - 0.018 14.5 0.0 0.043 13.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313124845|ref|YP_004035109.1| - 0.02 15.2 0.1 0.041 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF3253 PF11625.3 gi|313124845|ref|YP_004035109.1| - 0.021 14.7 0.0 1.5 8.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) NACHT PF05729.7 gi|313124845|ref|YP_004035109.1| - 0.029 14.0 0.0 1 9.0 0.0 2.5 2 1 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|313124845|ref|YP_004035109.1| - 0.038 14.3 0.0 0.094 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|313124845|ref|YP_004035109.1| - 0.056 12.8 0.1 0.24 10.8 0.0 2.0 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain SNF2_N PF00176.18 gi|313124845|ref|YP_004035109.1| - 0.057 12.1 0.0 0.31 9.7 0.0 1.9 2 0 0 2 2 2 0 SNF2 family N-terminal domain AAA_24 PF13479.1 gi|313124845|ref|YP_004035109.1| - 0.058 12.9 0.4 0.34 10.4 0.0 2.4 3 1 0 3 3 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|313124845|ref|YP_004035109.1| - 0.068 12.6 0.0 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family MobB PF03205.9 gi|313124845|ref|YP_004035109.1| - 0.07 12.8 0.0 0.21 11.2 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|313124845|ref|YP_004035109.1| - 0.085 12.3 0.0 3.5 7.0 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase NB-ARC PF00931.17 gi|313124845|ref|YP_004035109.1| - 0.094 11.5 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|313124845|ref|YP_004035109.1| - 0.1 12.6 0.0 0.44 10.5 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|313124845|ref|YP_004035109.1| - 0.11 11.8 1.3 2.6 7.3 0.9 2.7 1 1 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|313124845|ref|YP_004035109.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ArsA_ATPase PF02374.10 gi|313124845|ref|YP_004035109.1| - 0.12 11.3 0.0 0.41 9.6 0.0 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase GAF_2 PF13185.1 gi|313124846|ref|YP_004035110.1| - 3.5e-16 60.0 4.5 7e-07 29.8 0.1 3.6 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.21 gi|313124846|ref|YP_004035110.1| - 1.9e-15 56.5 0.1 4.4e-15 55.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|313124846|ref|YP_004035110.1| - 5.9e-14 52.2 1.6 2.1e-07 31.0 0.0 2.8 3 0 0 3 3 3 2 GAF domain HisKA PF00512.20 gi|313124846|ref|YP_004035110.1| - 3.6e-12 46.0 1.4 2.1e-11 43.6 1.0 2.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|313124846|ref|YP_004035110.1| - 2.1e-08 34.4 3.1 0.0018 18.3 0.0 3.5 4 1 0 4 4 4 2 GAF domain PAS_4 PF08448.5 gi|313124846|ref|YP_004035110.1| - 1.3e-05 25.2 1.9 5e-05 23.2 0.0 2.9 2 1 1 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|313124846|ref|YP_004035110.1| - 9.9e-05 22.0 0.0 0.00043 20.0 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|313124846|ref|YP_004035110.1| - 0.00054 19.7 0.0 0.0014 18.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|313124846|ref|YP_004035110.1| - 0.01 16.2 0.0 0.03 14.6 0.0 1.8 1 0 0 1 1 1 0 PAS domain TspO_MBR PF03073.10 gi|313124847|ref|YP_004035111.1| - 3.6e-48 162.8 16.8 4.1e-48 162.6 11.7 1.0 1 0 0 1 1 1 1 TspO/MBR family PsbX PF06596.6 gi|313124847|ref|YP_004035111.1| - 0.58 9.8 3.7 0.83 9.3 1.3 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) DUF4191 PF13829.1 gi|313124847|ref|YP_004035111.1| - 0.9 8.6 4.9 0.12 11.4 0.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) VKOR PF07884.9 gi|313124847|ref|YP_004035111.1| - 1.9 8.3 10.7 2.4 7.9 0.4 2.2 1 1 1 2 2 2 0 Vitamin K epoxide reductase family FtsX PF02687.16 gi|313124847|ref|YP_004035111.1| - 6.8 6.4 11.4 98 2.7 7.3 2.2 1 1 0 1 1 1 0 FtsX-like permease family tRNA-synt_2c PF01411.14 gi|313124848|ref|YP_004035112.1| - 8.5e-115 384.1 0.1 1.1e-114 383.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|313124848|ref|YP_004035112.1| - 1.9e-14 53.2 1.5 3.7e-14 52.3 1.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|313124848|ref|YP_004035112.1| - 9.2e-10 38.0 3.8 2.5e-09 36.7 2.6 1.7 1 0 0 1 1 1 1 DHHA1 domain DUF835 PF05763.7 gi|313124849|ref|YP_004035113.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Abhydrolase_6 PF12697.2 gi|313124850|ref|YP_004035114.1| - 1.6e-31 109.9 8.3 1.8e-31 109.7 5.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313124850|ref|YP_004035114.1| - 2.1e-15 56.9 0.6 2.8e-12 46.7 0.4 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313124850|ref|YP_004035114.1| - 2e-14 53.5 0.1 3.8e-14 52.6 0.1 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|313124850|ref|YP_004035114.1| - 1.2e-07 31.5 0.0 2.1e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Peptidase_S9 PF00326.16 gi|313124850|ref|YP_004035114.1| - 0.0042 16.3 0.0 0.0065 15.7 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family FSH1 PF03959.8 gi|313124850|ref|YP_004035114.1| - 0.0048 16.3 0.0 0.0068 15.8 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) GATase PF00117.23 gi|313124851|ref|YP_004035115.1| - 2.6e-24 85.7 0.0 3.4e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313124851|ref|YP_004035115.1| - 1.4e-11 44.3 0.5 1.3e-10 41.0 0.3 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|313124851|ref|YP_004035115.1| - 9.2e-06 24.6 0.0 1.2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|313124851|ref|YP_004035115.1| - 0.0086 15.6 0.0 0.018 14.6 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Maf_N PF08383.6 gi|313124852|ref|YP_004035116.1| - 0.14 11.7 2.0 8.9 5.9 0.1 2.4 2 0 0 2 2 2 0 Maf N-terminal region Fer4_7 PF12838.2 gi|313124853|ref|YP_004035117.1| - 2.2e-12 47.1 22.4 4.7e-08 33.2 4.6 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313124853|ref|YP_004035117.1| - 5.4e-12 44.7 12.5 2.4e-07 30.0 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|313124853|ref|YP_004035117.1| - 8.9e-10 38.0 13.4 5e-06 26.1 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313124853|ref|YP_004035117.1| - 1.8e-09 37.7 5.6 2.6e-09 37.1 3.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|313124853|ref|YP_004035117.1| - 2.1e-07 30.6 9.3 5.9e-07 29.2 6.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313124853|ref|YP_004035117.1| - 8.9e-07 28.4 9.5 0.0028 17.4 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|313124853|ref|YP_004035117.1| - 1.3e-06 28.0 19.8 0.00019 21.1 6.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313124853|ref|YP_004035117.1| - 2.9e-06 27.2 5.1 3.7e-05 23.6 4.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|313124853|ref|YP_004035117.1| - 4.1e-06 26.6 7.3 0.00034 20.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|313124853|ref|YP_004035117.1| - 1e-05 26.1 6.0 0.00035 21.2 1.1 2.4 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|313124853|ref|YP_004035117.1| - 1.8e-05 24.9 12.0 0.0047 17.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|313124853|ref|YP_004035117.1| - 2.4e-05 24.6 1.1 0.087 13.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313124853|ref|YP_004035117.1| - 0.00013 22.3 4.1 0.0025 18.2 0.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|313124853|ref|YP_004035117.1| - 0.0024 18.1 14.0 0.035 14.5 9.7 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|313124853|ref|YP_004035117.1| - 0.011 16.3 13.6 0.31 11.6 9.3 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain Ferritin PF00210.19 gi|313124854|ref|YP_004035118.1| - 3.2e-22 78.8 0.6 3.6e-22 78.6 0.4 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|313124854|ref|YP_004035118.1| - 2.6e-07 31.0 0.1 3.1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|313124854|ref|YP_004035118.1| - 0.00083 19.3 0.1 0.001 18.9 0.1 1.3 1 1 0 1 1 1 1 Ferritin-like domain Ferritin-like PF12902.2 gi|313124854|ref|YP_004035118.1| - 0.001 18.6 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like DUF892 PF05974.7 gi|313124854|ref|YP_004035118.1| - 0.0012 18.6 2.9 0.0043 16.8 1.9 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Mn_catalase PF05067.7 gi|313124854|ref|YP_004035118.1| - 0.0026 16.5 0.2 0.0077 15.0 0.0 1.6 1 1 1 2 2 2 1 Manganese containing catalase DUF2383 PF09537.5 gi|313124854|ref|YP_004035118.1| - 0.01 16.0 1.4 0.16 12.2 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) DUF4439 PF14530.1 gi|313124854|ref|YP_004035118.1| - 0.067 13.6 0.4 0.08 13.4 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4439) CCG PF02754.11 gi|313124855|ref|YP_004035119.1| - 2.4e-19 69.1 0.0 1.5e-13 50.5 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|313124855|ref|YP_004035119.1| - 7.2e-12 45.1 6.4 1e-11 44.6 3.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313124855|ref|YP_004035119.1| - 3.1e-10 40.1 7.9 1e-09 38.4 3.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313124855|ref|YP_004035119.1| - 2.6e-09 36.3 14.0 8.1e-05 22.0 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|313124855|ref|YP_004035119.1| - 2.6e-09 37.3 3.6 0.0032 17.8 0.2 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313124855|ref|YP_004035119.1| - 1.2e-07 31.4 13.8 2.2e-06 27.3 8.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313124855|ref|YP_004035119.1| - 7.2e-07 28.7 19.8 8.4e-05 22.2 1.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|313124855|ref|YP_004035119.1| - 8.4e-06 26.4 3.9 0.069 13.8 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|313124855|ref|YP_004035119.1| - 1.7e-05 25.0 15.1 0.0002 21.6 9.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|313124855|ref|YP_004035119.1| - 5.3e-05 23.4 9.1 5.3e-05 23.4 6.3 2.8 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|313124855|ref|YP_004035119.1| - 0.00011 21.9 10.9 0.019 14.8 0.3 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313124855|ref|YP_004035119.1| - 0.00029 20.5 23.9 0.00041 20.0 1.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|313124855|ref|YP_004035119.1| - 0.00062 19.8 19.0 0.0045 17.2 0.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Nitrate_red_gam PF02665.9 gi|313124855|ref|YP_004035119.1| - 0.069 12.4 4.0 0.12 11.7 2.7 1.3 1 0 0 1 1 1 0 Nitrate reductase gamma subunit Fer4_15 PF13459.1 gi|313124855|ref|YP_004035119.1| - 0.64 10.6 12.1 0.63 10.6 0.4 3.4 4 0 0 4 4 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|313124855|ref|YP_004035119.1| - 0.84 10.3 26.0 0.34 11.5 2.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain CbiQ PF02361.11 gi|313124856|ref|YP_004035120.1| - 2.4e-13 50.1 6.6 5.8e-13 48.9 4.6 1.5 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|313124857|ref|YP_004035121.1| - 7.2e-30 104.0 0.0 1.2e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313124857|ref|YP_004035121.1| - 1.3e-09 38.4 0.0 0.00029 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313124857|ref|YP_004035121.1| - 3.8e-06 26.2 0.0 2.6e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|313124857|ref|YP_004035121.1| - 3.9e-05 23.7 0.0 6.6e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|313124857|ref|YP_004035121.1| - 5.1e-05 23.1 0.1 0.00059 19.6 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|313124857|ref|YP_004035121.1| - 0.00017 21.0 0.0 0.00033 20.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|313124857|ref|YP_004035121.1| - 0.00051 19.1 0.0 0.24 10.4 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain UPF0079 PF02367.12 gi|313124857|ref|YP_004035121.1| - 0.001 18.7 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|313124857|ref|YP_004035121.1| - 0.0019 17.7 0.0 1.2 8.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF258 PF03193.11 gi|313124857|ref|YP_004035121.1| - 0.0041 16.3 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313124857|ref|YP_004035121.1| - 0.0052 16.5 0.7 0.32 10.7 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|313124857|ref|YP_004035121.1| - 0.0091 16.3 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|313124857|ref|YP_004035121.1| - 0.0096 15.5 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|313124857|ref|YP_004035121.1| - 0.011 15.1 0.3 0.054 12.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|313124857|ref|YP_004035121.1| - 0.011 15.7 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|313124857|ref|YP_004035121.1| - 0.013 14.0 0.0 0.16 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|313124857|ref|YP_004035121.1| - 0.017 15.2 0.0 0.059 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|313124857|ref|YP_004035121.1| - 0.019 14.4 0.1 0.074 12.4 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|313124857|ref|YP_004035121.1| - 0.024 13.7 0.0 0.044 12.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|313124857|ref|YP_004035121.1| - 0.031 13.9 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|313124857|ref|YP_004035121.1| - 0.035 13.9 0.7 0.089 12.6 0.5 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313124857|ref|YP_004035121.1| - 0.038 13.1 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|313124857|ref|YP_004035121.1| - 0.051 14.4 0.5 0.42 11.4 0.3 2.3 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|313124857|ref|YP_004035121.1| - 0.06 13.0 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase FlbD PF06289.6 gi|313124857|ref|YP_004035121.1| - 0.08 12.3 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Flagellar protein (FlbD) HAD PF12710.2 gi|313124857|ref|YP_004035121.1| - 0.09 12.9 0.0 0.099 12.7 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Miro PF08477.8 gi|313124857|ref|YP_004035121.1| - 0.12 12.8 0.0 0.38 11.2 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein AAA_14 PF13173.1 gi|313124857|ref|YP_004035121.1| - 0.13 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|313124857|ref|YP_004035121.1| - 0.15 12.3 0.0 0.53 10.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|313124857|ref|YP_004035121.1| - 0.17 9.1 0.0 0.23 8.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BioY PF02632.9 gi|313124858|ref|YP_004035122.1| - 3e-33 114.5 19.6 5e-33 113.8 13.6 1.3 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|313124858|ref|YP_004035122.1| - 0.0019 18.1 20.3 0.0062 16.4 14.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) CbiM PF01891.11 gi|313124858|ref|YP_004035122.1| - 7.2 6.1 23.8 18 4.8 16.5 1.6 1 1 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region XylR_N PF06505.6 gi|313124859|ref|YP_004035123.1| - 0.067 12.6 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Activator of aromatic catabolism MCM PF00493.18 gi|313124860|ref|YP_004035124.1| - 7.4e-114 379.9 5.0 6.7e-66 222.3 0.2 3.6 4 0 0 4 4 4 3 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|313124860|ref|YP_004035124.1| - 2.5e-48 162.1 2.9 3.5e-15 55.9 0.0 5.0 4 0 0 4 4 4 4 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|313124860|ref|YP_004035124.1| - 1.2e-26 93.4 0.0 4.1e-09 35.7 0.0 5.6 5 1 0 5 5 5 4 Intein splicing domain MCM_N PF14551.1 gi|313124860|ref|YP_004035124.1| - 4.3e-15 56.2 1.7 2.8e-14 53.6 0.4 2.9 2 0 0 2 2 2 1 MCM N-terminal domain HTH_3 PF01381.17 gi|313124860|ref|YP_004035124.1| - 6.1e-10 38.8 0.0 0.00017 21.3 0.0 3.7 4 0 0 4 4 4 2 Helix-turn-helix Hom_end PF05204.9 gi|313124860|ref|YP_004035124.1| - 1.9e-09 37.4 1.1 0.025 14.5 0.0 3.9 4 0 0 4 4 3 3 Homing endonuclease HTH_31 PF13560.1 gi|313124860|ref|YP_004035124.1| - 1.1e-08 35.1 8.4 0.00011 22.3 0.1 5.0 5 0 0 5 5 4 2 Helix-turn-helix domain Hint PF01079.15 gi|313124860|ref|YP_004035124.1| - 6.9e-06 25.4 0.0 0.0049 16.1 0.0 3.6 4 0 0 4 4 4 1 Hint module HTH_19 PF12844.2 gi|313124860|ref|YP_004035124.1| - 7.3e-05 22.7 0.0 0.11 12.5 0.0 3.5 4 0 0 4 4 2 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|313124860|ref|YP_004035124.1| - 0.00026 20.4 0.0 0.00059 19.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_ISL3 PF13542.1 gi|313124860|ref|YP_004035124.1| - 0.00035 19.6 0.1 0.00095 18.2 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.1 gi|313124860|ref|YP_004035124.1| - 0.0016 18.6 0.0 0.066 13.4 0.0 2.8 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.1 gi|313124860|ref|YP_004035124.1| - 0.0021 17.5 0.0 0.0094 15.4 0.0 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain Mg_chelatase PF01078.16 gi|313124860|ref|YP_004035124.1| - 0.0095 15.1 0.1 4.7 6.3 0.0 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Hydrolase_6 PF13344.1 gi|313124860|ref|YP_004035124.1| - 0.022 14.6 0.1 0.34 10.8 0.0 2.8 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HTH_23 PF13384.1 gi|313124860|ref|YP_004035124.1| - 0.03 13.9 0.0 0.15 11.7 0.0 2.3 1 0 0 1 1 1 0 Homeodomain-like domain CENP-B_N PF04218.8 gi|313124860|ref|YP_004035124.1| - 0.073 12.5 0.0 0.23 10.9 0.0 1.8 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain LAGLIDADG_WhiA PF14527.1 gi|313124860|ref|YP_004035124.1| - 0.095 12.5 0.0 4.8 7.1 0.0 3.1 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain Tir_receptor_N PF07490.6 gi|313124861|ref|YP_004035125.1| - 0.043 13.4 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus DnaG_DnaB_bind PF08278.6 gi|313124863|ref|YP_004035127.1| - 0.089 13.0 2.4 0.19 11.9 1.6 1.5 1 0 0 1 1 1 0 DNA primase DnaG DnaB-binding DUF3407 PF11887.3 gi|313124864|ref|YP_004035128.1| - 1.2 8.4 6.6 0.35 10.1 2.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) CbiA PF01656.18 gi|313124865|ref|YP_004035129.1| - 3e-15 56.1 0.0 3.8e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|313124865|ref|YP_004035129.1| - 0.00019 22.2 0.0 0.00045 21.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|313124865|ref|YP_004035129.1| - 0.00025 21.0 0.0 0.00053 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|313124865|ref|YP_004035129.1| - 0.0074 15.6 0.3 4.8 6.4 0.0 2.8 2 1 0 2 2 2 2 YhjQ protein ParA PF10609.4 gi|313124865|ref|YP_004035129.1| - 0.019 14.8 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 ParA/MinD ATPase like AAA_24 PF13479.1 gi|313124865|ref|YP_004035129.1| - 0.028 13.9 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ribosomal_L34e PF01199.13 gi|313124865|ref|YP_004035129.1| - 0.028 14.6 0.0 0.057 13.6 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L34e MipZ PF09140.6 gi|313124865|ref|YP_004035129.1| - 0.031 13.3 0.1 0.081 11.9 0.1 1.6 1 1 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.1 gi|313124865|ref|YP_004035129.1| - 0.047 13.0 2.3 0.23 10.8 1.6 2.2 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|313124865|ref|YP_004035129.1| - 0.072 12.2 0.1 3.8 6.6 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|313124865|ref|YP_004035129.1| - 0.082 11.9 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_33 PF13671.1 gi|313124865|ref|YP_004035129.1| - 0.094 12.5 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain TFIIB PF00382.14 gi|313124866|ref|YP_004035130.1| - 1.5e-36 124.0 2.0 5.6e-18 64.5 0.6 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313124866|ref|YP_004035130.1| - 1.6e-10 40.1 2.3 3.2e-10 39.1 1.6 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.15 gi|313124866|ref|YP_004035130.1| - 0.012 15.0 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zinc-ribbons_6 PF07191.7 gi|313124866|ref|YP_004035130.1| - 0.036 13.8 0.4 0.062 13.0 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|313124866|ref|YP_004035130.1| - 0.074 12.8 0.6 0.15 11.9 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|313124866|ref|YP_004035130.1| - 0.15 11.8 1.7 0.35 10.6 1.2 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|313124866|ref|YP_004035130.1| - 1.6 8.7 8.7 0.39 10.7 2.1 2.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 HTH_23 PF13384.1 gi|313124867|ref|YP_004035131.1| - 0.066 12.8 0.1 17 5.1 0.0 3.4 4 0 0 4 4 4 0 Homeodomain-like domain AAA_31 PF13614.1 gi|313124868|ref|YP_004035132.1| - 1.2e-09 38.2 0.0 1.7e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|313124868|ref|YP_004035132.1| - 2.5e-08 33.5 0.3 3.4e-08 33.1 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|313124868|ref|YP_004035132.1| - 0.00016 20.8 1.8 0.17 10.8 0.1 2.4 2 1 1 3 3 3 2 ATPase MipZ YhjQ PF06564.7 gi|313124868|ref|YP_004035132.1| - 0.00076 18.9 0.8 0.024 13.9 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein Glyco_trans_4_4 PF13579.1 gi|313124868|ref|YP_004035132.1| - 0.021 14.9 3.6 0.036 14.1 2.5 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain ParA PF10609.4 gi|313124868|ref|YP_004035132.1| - 0.12 12.2 0.1 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 ParA/MinD ATPase like VirC1 PF07015.6 gi|313124868|ref|YP_004035132.1| - 0.13 11.3 2.3 0.37 9.8 1.2 1.9 2 0 0 2 2 2 0 VirC1 protein PAS_9 PF13426.1 gi|313124869|ref|YP_004035133.1| - 1.5e-22 79.9 0.3 7.9e-11 42.2 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|313124869|ref|YP_004035133.1| - 6.1e-21 74.3 0.1 4.7e-09 36.0 0.0 2.9 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|313124869|ref|YP_004035133.1| - 1.2e-20 73.5 0.0 6.9e-20 71.1 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|313124869|ref|YP_004035133.1| - 9.6e-19 67.1 0.1 2.1e-18 66.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313124869|ref|YP_004035133.1| - 7.3e-16 57.9 1.3 3.4e-15 55.7 0.1 2.9 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|313124869|ref|YP_004035133.1| - 1.6e-15 57.1 2.7 7.6e-08 32.3 0.1 3.3 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|313124869|ref|YP_004035133.1| - 5.2e-14 51.4 0.4 1.8e-07 30.7 0.1 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|313124869|ref|YP_004035133.1| - 1.9e-05 24.7 0.0 0.00014 21.9 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.1 gi|313124869|ref|YP_004035133.1| - 0.00047 20.3 0.0 0.14 12.3 0.0 2.7 2 1 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|313124869|ref|YP_004035133.1| - 0.00054 19.6 0.0 0.0015 18.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313124869|ref|YP_004035133.1| - 0.0026 17.8 0.0 0.19 11.8 0.0 2.8 2 0 0 2 2 2 1 PAS fold Chitin_bind_4 PF00379.18 gi|313124869|ref|YP_004035133.1| - 0.045 14.0 0.0 0.27 11.5 0.0 2.4 1 0 0 1 1 1 0 Insect cuticle protein NQR2_RnfD_RnfE PF03116.10 gi|313124871|ref|YP_004035135.1| - 0.15 11.1 5.7 0.19 10.8 3.9 1.1 1 0 0 1 1 1 0 NQR2, RnfD, RnfE family TrbC PF04956.8 gi|313124871|ref|YP_004035135.1| - 1.8 8.5 9.4 5.8 6.9 2.8 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family AzlD PF05437.7 gi|313124871|ref|YP_004035135.1| - 4.1 7.4 13.2 16 5.5 9.2 1.8 1 1 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) DUF1212 PF06738.7 gi|313124871|ref|YP_004035135.1| - 5.3 6.4 8.2 6.8 6.1 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) Abi PF02517.11 gi|313124871|ref|YP_004035135.1| - 5.9 7.1 9.9 34 4.6 6.9 2.1 1 1 0 1 1 1 0 CAAX protease self-immunity DUF4282 PF14110.1 gi|313124871|ref|YP_004035135.1| - 9.3 6.5 13.0 0.9 9.7 5.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) HIT PF01230.18 gi|313124872|ref|YP_004035136.1| - 2.3e-26 92.1 0.0 2.8e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|313124872|ref|YP_004035136.1| - 8.5e-13 48.5 0.0 1.1e-12 48.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.12 gi|313124872|ref|YP_004035136.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain CwfJ_C_1 PF04677.10 gi|313124872|ref|YP_004035136.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 tRNA-synt_1b PF00579.20 gi|313124873|ref|YP_004035137.1| - 2.7e-48 164.5 0.0 3.6e-48 164.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|313124873|ref|YP_004035137.1| - 0.018 13.7 0.0 1.5 7.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF4418 PF14387.1 gi|313124874|ref|YP_004035138.1| - 0.34 10.6 5.7 0.38 10.5 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) Ribosomal_S5_C PF03719.10 gi|313124874|ref|YP_004035138.1| - 0.55 9.5 5.1 0.24 10.7 0.7 2.2 1 1 1 2 2 2 0 Ribosomal protein S5, C-terminal domain DUF726 PF05277.7 gi|313124874|ref|YP_004035138.1| - 0.62 8.8 5.2 0.61 8.9 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF726) DUF2627 PF11118.3 gi|313124874|ref|YP_004035138.1| - 1.2 9.3 5.3 1.9 8.6 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) DUF3188 PF11384.3 gi|313124874|ref|YP_004035138.1| - 1.7 8.2 9.2 1.7 8.3 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3188) DUF1206 PF06724.6 gi|313124874|ref|YP_004035138.1| - 2.3 8.0 12.0 4 7.2 0.6 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF3185 PF11381.3 gi|313124874|ref|YP_004035138.1| - 3.4 7.4 14.1 1.4 8.7 0.6 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) DUF4225 PF13988.1 gi|313124874|ref|YP_004035138.1| - 6.1 6.2 7.4 9.1 5.7 5.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4225) DUF2892 PF11127.3 gi|313124874|ref|YP_004035138.1| - 7.1 6.5 9.9 19 5.1 6.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) PIRT PF15099.1 gi|313124874|ref|YP_004035138.1| - 8 5.6 7.0 11 5.2 4.9 1.2 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family eIF-1a PF01176.14 gi|313124875|ref|YP_004035139.1| - 4.1e-28 96.5 0.6 5.1e-28 96.2 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Sclerostin PF05463.6 gi|313124875|ref|YP_004035139.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 Sclerostin (SOST) zinc_ribbon_5 PF13719.1 gi|313124875|ref|YP_004035139.1| - 0.13 11.9 0.0 0.26 10.8 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain RIO1 PF01163.17 gi|313124876|ref|YP_004035140.1| - 3.3e-61 205.9 0.8 4.9e-61 205.3 0.0 1.5 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|313124876|ref|YP_004035140.1| - 3.3e-08 33.5 0.4 1.2e-05 25.1 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|313124876|ref|YP_004035140.1| - 8.4e-08 31.5 0.0 1.4e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|313124876|ref|YP_004035140.1| - 0.00046 19.4 0.0 0.0016 17.6 0.0 1.8 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|313124876|ref|YP_004035140.1| - 0.0075 15.5 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) KH_1 PF00013.24 gi|313124877|ref|YP_004035141.1| - 6.2e-17 60.9 5.5 6.1e-09 35.4 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|313124877|ref|YP_004035141.1| - 2.7e-08 33.2 2.2 0.00015 21.3 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|313124877|ref|YP_004035141.1| - 4.5e-05 22.9 2.9 0.007 15.8 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|313124877|ref|YP_004035141.1| - 0.0081 15.7 0.9 3.4 7.3 0.1 2.7 2 1 1 3 3 3 2 KH domain Cpn60_TCP1 PF00118.19 gi|313124879|ref|YP_004035143.1| - 6.2e-168 559.3 3.9 7.1e-168 559.1 2.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.11 gi|313124879|ref|YP_004035143.1| - 0.039 14.2 0.6 8.1 6.8 0.1 2.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF307 PF03733.8 gi|313124880|ref|YP_004035144.1| - 9.3e-09 35.5 24.7 3.3e-05 24.2 5.5 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF307) FA_desaturase PF00487.19 gi|313124880|ref|YP_004035144.1| - 6.1 6.1 18.7 0.16 11.4 3.9 2.0 1 1 1 2 2 2 0 Fatty acid desaturase AAA_18 PF13238.1 gi|313124881|ref|YP_004035145.1| - 6.1e-15 55.6 0.1 9.7e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313124881|ref|YP_004035145.1| - 9.2e-11 42.6 1.0 1.5e-10 41.9 0.7 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313124881|ref|YP_004035145.1| - 2e-07 31.0 0.0 6e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain ADK PF00406.17 gi|313124881|ref|YP_004035145.1| - 0.00023 21.0 0.1 0.00052 19.9 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|313124881|ref|YP_004035145.1| - 0.057 12.8 0.6 7.4 5.9 0.1 2.3 1 1 1 2 2 2 0 Dephospho-CoA kinase LacI PF00356.16 gi|313124881|ref|YP_004035145.1| - 0.094 12.3 0.1 0.2 11.2 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family RNA_binding PF01877.12 gi|313124882|ref|YP_004035146.1| - 6.3e-23 81.0 1.8 1.1e-22 80.2 1.2 1.4 1 1 0 1 1 1 1 RNA binding Gate PF07670.9 gi|313124883|ref|YP_004035147.1| - 4.6e-06 26.5 18.5 0.00042 20.1 2.0 2.9 3 1 0 3 3 3 2 Nucleoside recognition MgtE PF01769.11 gi|313124884|ref|YP_004035148.1| - 3.1e-19 69.5 9.5 4.9e-19 68.9 6.6 1.3 1 0 0 1 1 1 1 Divalent cation transporter DUF697 PF05128.7 gi|313124884|ref|YP_004035148.1| - 1.5 8.2 8.3 2.6 7.4 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF697) MgtE PF01769.11 gi|313124885|ref|YP_004035149.1| - 1.2e-16 61.2 6.7 1.4e-16 61.0 3.8 1.6 2 0 0 2 2 2 1 Divalent cation transporter Cation_efflux PF01545.16 gi|313124885|ref|YP_004035149.1| - 0.15 11.1 4.8 1.2 8.0 1.5 2.1 1 1 1 2 2 2 0 Cation efflux family SRP54 PF00448.17 gi|313124886|ref|YP_004035150.1| - 7.1e-63 211.6 0.2 1.5e-62 210.5 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|313124886|ref|YP_004035150.1| - 2.4e-30 104.8 3.6 2.4e-30 104.8 2.5 2.7 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|313124886|ref|YP_004035150.1| - 4.7e-17 61.8 0.9 2.2e-16 59.6 0.2 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|313124886|ref|YP_004035150.1| - 0.00018 20.6 0.0 0.00041 19.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|313124886|ref|YP_004035150.1| - 0.00027 20.3 0.2 0.0013 18.1 0.1 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|313124886|ref|YP_004035150.1| - 0.00049 19.5 2.9 0.00099 18.5 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|313124886|ref|YP_004035150.1| - 0.00098 18.6 1.1 0.0014 18.1 0.8 1.4 1 1 0 1 1 1 1 AAA-like domain APS_kinase PF01583.15 gi|313124886|ref|YP_004035150.1| - 0.0022 17.6 0.0 0.0054 16.4 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase SMC_N PF02463.14 gi|313124886|ref|YP_004035150.1| - 0.0038 16.4 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|313124886|ref|YP_004035150.1| - 0.0049 16.5 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|313124886|ref|YP_004035150.1| - 0.005 16.7 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|313124886|ref|YP_004035150.1| - 0.0089 16.3 0.0 0.017 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|313124886|ref|YP_004035150.1| - 0.012 14.7 3.0 0.036 13.1 0.1 2.4 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_22 PF13401.1 gi|313124886|ref|YP_004035150.1| - 0.013 15.6 0.1 0.079 13.1 0.0 2.3 3 0 0 3 3 2 0 AAA domain KTI12 PF08433.5 gi|313124886|ref|YP_004035150.1| - 0.029 13.5 0.0 0.06 12.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 cobW PF02492.14 gi|313124886|ref|YP_004035150.1| - 0.034 13.6 0.5 0.29 10.5 0.4 2.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|313124886|ref|YP_004035150.1| - 0.034 14.1 0.3 0.15 12.0 0.1 2.3 1 1 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|313124886|ref|YP_004035150.1| - 0.046 12.3 0.0 0.083 11.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Thymidylate_kin PF02223.12 gi|313124886|ref|YP_004035150.1| - 0.052 12.9 0.3 0.24 10.7 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_17 PF13207.1 gi|313124886|ref|YP_004035150.1| - 0.059 14.1 0.6 0.31 11.8 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|313124886|ref|YP_004035150.1| - 0.072 12.8 0.0 0.98 9.2 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain 6PF2K PF01591.13 gi|313124886|ref|YP_004035150.1| - 0.17 10.9 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase IZUMO PF15005.1 gi|313124886|ref|YP_004035150.1| - 0.19 11.7 1.3 0.39 10.7 0.1 2.1 3 0 0 3 3 2 0 Izumo sperm-egg fusion AAA_18 PF13238.1 gi|313124886|ref|YP_004035150.1| - 0.46 10.7 3.3 0.61 10.3 0.2 2.8 3 1 0 3 3 3 0 AAA domain Spectrin PF00435.16 gi|313124886|ref|YP_004035150.1| - 3.1 8.1 6.8 0.29 11.4 0.2 2.5 3 0 0 3 3 2 0 Spectrin repeat 2-Hacid_dh_C PF02826.14 gi|313124887|ref|YP_004035151.1| - 5.5e-50 168.9 0.0 7.6e-50 168.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|313124887|ref|YP_004035151.1| - 6.1e-17 61.3 0.0 6.9e-17 61.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|313124887|ref|YP_004035151.1| - 0.021 14.6 0.1 0.074 12.8 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF3151 PF11349.3 gi|313124887|ref|YP_004035151.1| - 0.097 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3151) F420_oxidored PF03807.12 gi|313124887|ref|YP_004035151.1| - 0.11 12.9 0.3 1.1 9.7 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|313124887|ref|YP_004035151.1| - 0.18 11.8 1.5 24 4.9 0.0 3.0 3 0 0 3 3 3 0 TrkA-N domain ThiF PF00899.16 gi|313124887|ref|YP_004035151.1| - 0.18 11.5 0.4 0.47 10.2 0.3 1.7 1 0 0 1 1 1 0 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|313124887|ref|YP_004035151.1| - 0.52 10.0 2.0 42 3.8 0.0 3.2 3 1 1 4 4 4 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LysE PF01810.13 gi|313124888|ref|YP_004035152.1| - 3.5e-30 104.6 8.6 4.3e-30 104.4 6.0 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|313124888|ref|YP_004035152.1| - 0.021 14.2 0.2 0.039 13.3 0.1 1.7 1 1 0 1 1 1 0 Integral membrane protein TerC family DUF3096 PF11295.3 gi|313124888|ref|YP_004035152.1| - 0.073 12.5 0.2 0.073 12.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) SRP54 PF00448.17 gi|313124889|ref|YP_004035153.1| - 2.4e-70 235.9 0.4 3.9e-70 235.2 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|313124889|ref|YP_004035153.1| - 1.3e-15 57.2 1.7 2.9e-15 56.1 0.2 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|313124889|ref|YP_004035153.1| - 1e-05 25.0 1.1 1e-05 25.0 0.8 2.4 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|313124889|ref|YP_004035153.1| - 7.7e-05 22.2 0.3 0.00021 20.7 0.2 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|313124889|ref|YP_004035153.1| - 7.8e-05 21.8 0.2 0.00019 20.6 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|313124889|ref|YP_004035153.1| - 9.6e-05 22.0 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Thymidylate_kin PF02223.12 gi|313124889|ref|YP_004035153.1| - 0.00024 20.5 0.1 0.011 15.1 0.0 2.6 2 0 0 2 2 2 1 Thymidylate kinase AAA_22 PF13401.1 gi|313124889|ref|YP_004035153.1| - 0.0004 20.5 0.1 0.0033 17.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|313124889|ref|YP_004035153.1| - 0.002 17.8 0.1 0.0071 16.0 0.1 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|313124889|ref|YP_004035153.1| - 0.0043 16.3 0.0 0.0088 15.2 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|313124889|ref|YP_004035153.1| - 0.0085 15.8 0.1 0.047 13.4 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|313124889|ref|YP_004035153.1| - 0.01 15.8 0.0 0.01 15.8 0.0 2.9 1 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|313124889|ref|YP_004035153.1| - 0.017 15.0 0.0 0.075 12.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|313124889|ref|YP_004035153.1| - 0.02 14.5 0.5 0.043 13.5 0.1 1.7 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.1 gi|313124889|ref|YP_004035153.1| - 0.06 13.2 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|313124889|ref|YP_004035153.1| - 0.31 11.3 1.9 0.75 10.0 0.1 2.5 1 1 2 3 3 3 0 ABC transporter AAA PF00004.24 gi|313124889|ref|YP_004035153.1| - 0.33 11.1 3.2 0.59 10.3 0.1 2.9 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|313124889|ref|YP_004035153.1| - 0.48 10.3 8.1 0.16 11.9 0.3 3.4 3 1 0 3 3 3 0 AAA domain Pol_alpha_B_N PF08418.5 gi|313124889|ref|YP_004035153.1| - 0.49 9.9 9.3 0.76 9.2 6.4 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal SPX PF03105.14 gi|313124889|ref|YP_004035153.1| - 4.4 7.0 8.5 1.2 8.8 3.7 1.6 2 0 0 2 2 2 0 SPX domain Prefoldin PF02996.12 gi|313124890|ref|YP_004035154.1| - 2.1e-23 82.2 7.5 2.1e-23 82.2 5.2 2.2 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|313124890|ref|YP_004035154.1| - 7.5e-06 25.6 20.2 0.00017 21.2 3.9 3.5 1 1 2 3 3 2 2 Prefoldin subunit IncA PF04156.9 gi|313124890|ref|YP_004035154.1| - 1e-05 25.2 26.8 0.00086 18.9 5.5 2.1 2 0 0 2 2 2 2 IncA protein GAS PF13851.1 gi|313124890|ref|YP_004035154.1| - 6e-05 22.3 13.1 0.016 14.4 0.4 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|313124890|ref|YP_004035154.1| - 0.00031 19.5 17.8 0.0038 15.9 2.1 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein APG6 PF04111.7 gi|313124890|ref|YP_004035154.1| - 0.00079 18.5 21.0 0.027 13.5 2.8 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 Tropomyosin_1 PF12718.2 gi|313124890|ref|YP_004035154.1| - 0.0011 18.8 25.2 0.026 14.3 3.8 2.2 2 0 0 2 2 2 2 Tropomyosin like Laminin_II PF06009.7 gi|313124890|ref|YP_004035154.1| - 0.003 17.3 8.7 0.088 12.5 0.1 2.2 2 0 0 2 2 2 1 Laminin Domain II COG2 PF06148.6 gi|313124890|ref|YP_004035154.1| - 0.0037 17.1 8.6 0.12 12.2 0.2 2.2 2 0 0 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 HCMV_UL139 PF12507.3 gi|313124890|ref|YP_004035154.1| - 0.0057 16.8 6.5 0.87 9.7 2.6 2.1 2 0 0 2 2 2 1 Human Cytomegalovirus UL139 protein NPV_P10 PF05531.7 gi|313124890|ref|YP_004035154.1| - 0.0063 16.7 17.2 0.034 14.3 1.9 2.5 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein DivIC PF04977.10 gi|313124890|ref|YP_004035154.1| - 0.0065 15.9 7.4 0.0065 15.9 5.1 3.2 2 1 1 3 3 2 2 Septum formation initiator TBPIP PF07106.8 gi|313124890|ref|YP_004035154.1| - 0.0067 16.0 22.0 0.024 14.1 2.0 2.1 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF972 PF06156.8 gi|313124890|ref|YP_004035154.1| - 0.0067 16.7 14.5 0.046 14.0 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF972) DUF812 PF05667.6 gi|313124890|ref|YP_004035154.1| - 0.0067 15.0 19.4 0.037 12.5 1.9 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) Reo_sigmaC PF04582.7 gi|313124890|ref|YP_004035154.1| - 0.0084 15.3 6.0 0.037 13.2 0.2 2.0 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|313124890|ref|YP_004035154.1| - 0.011 15.5 9.3 0.31 10.8 0.3 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.4 gi|313124890|ref|YP_004035154.1| - 0.012 15.7 18.8 0.035 14.2 2.7 2.6 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Ax_dynein_light PF10211.4 gi|313124890|ref|YP_004035154.1| - 0.014 15.2 21.4 0.1 12.4 1.6 2.2 2 0 0 2 2 2 0 Axonemal dynein light chain Fib_alpha PF08702.5 gi|313124890|ref|YP_004035154.1| - 0.016 15.3 16.0 0.18 11.9 0.7 2.4 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.1 gi|313124890|ref|YP_004035154.1| - 0.021 13.2 16.9 0.2 10.0 11.7 1.9 1 1 0 1 1 1 0 AAA domain CENP-F_leu_zip PF10473.4 gi|313124890|ref|YP_004035154.1| - 0.023 14.5 2.2 0.023 14.5 1.5 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Vps51 PF08700.6 gi|313124890|ref|YP_004035154.1| - 0.026 14.3 10.3 0.9 9.4 0.4 2.8 2 2 0 2 2 2 0 Vps51/Vps67 DUF1515 PF07439.6 gi|313124890|ref|YP_004035154.1| - 0.03 14.1 10.2 0.24 11.2 0.6 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) Toprim PF01751.17 gi|313124890|ref|YP_004035154.1| - 0.031 14.2 1.3 0.56 10.2 0.1 2.1 1 1 1 2 2 2 0 Toprim domain Lzipper-MIP1 PF14389.1 gi|313124890|ref|YP_004035154.1| - 0.043 13.9 17.1 0.37 10.9 2.6 2.7 2 1 1 3 3 2 0 Leucine-zipper of ternary complex factor MIP1 DUF4618 PF15397.1 gi|313124890|ref|YP_004035154.1| - 0.045 13.0 14.1 0.56 9.5 1.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) ATG16 PF08614.6 gi|313124890|ref|YP_004035154.1| - 0.047 13.5 16.1 0.65 9.7 4.4 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) CASP_C PF08172.7 gi|313124890|ref|YP_004035154.1| - 0.059 12.3 0.4 0.059 12.3 0.3 2.2 2 0 0 2 2 2 0 CASP C terminal DUF4337 PF14235.1 gi|313124890|ref|YP_004035154.1| - 0.062 13.1 17.8 0.29 10.9 7.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) MAD PF05557.8 gi|313124890|ref|YP_004035154.1| - 0.063 11.3 13.6 0.34 8.9 0.7 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein DUF607 PF04678.8 gi|313124890|ref|YP_004035154.1| - 0.067 13.1 8.4 0.4 10.5 1.2 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Hemerythrin PF01814.18 gi|313124890|ref|YP_004035154.1| - 0.068 13.3 3.9 0.85 9.7 0.1 2.3 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Tnp_P_element PF12017.3 gi|313124890|ref|YP_004035154.1| - 0.07 12.3 8.7 0.33 10.1 0.0 2.1 2 0 0 2 2 2 0 Transposase protein Cluap1 PF10234.4 gi|313124890|ref|YP_004035154.1| - 0.11 11.6 13.4 0.25 10.5 4.1 2.0 2 0 0 2 2 2 0 Clusterin-associated protein-1 YlqD PF11068.3 gi|313124890|ref|YP_004035154.1| - 0.13 12.2 30.2 0.87 9.6 10.0 2.8 2 1 0 2 2 2 0 YlqD protein EzrA PF06160.7 gi|313124890|ref|YP_004035154.1| - 0.14 10.2 19.2 0.046 11.9 1.7 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF2730 PF10805.3 gi|313124890|ref|YP_004035154.1| - 0.15 11.8 8.1 3.2 7.5 0.7 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) Spectrin PF00435.16 gi|313124890|ref|YP_004035154.1| - 0.17 12.1 19.1 0.49 10.7 1.9 2.3 2 0 0 2 2 2 0 Spectrin repeat DUF904 PF06005.7 gi|313124890|ref|YP_004035154.1| - 0.17 12.1 24.9 0.82 10.0 7.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Allexi_40kDa PF05549.6 gi|313124890|ref|YP_004035154.1| - 0.17 11.1 4.4 2.1 7.5 0.5 2.1 2 0 0 2 2 2 0 Allexivirus 40kDa protein ORF6C PF10552.4 gi|313124890|ref|YP_004035154.1| - 0.18 11.5 15.2 0.48 10.1 1.4 2.3 2 0 0 2 2 2 0 ORF6C domain Fmp27_WPPW PF10359.4 gi|313124890|ref|YP_004035154.1| - 0.2 10.0 11.9 0.33 9.3 2.9 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Spc24 PF08286.6 gi|313124890|ref|YP_004035154.1| - 0.21 11.2 24.8 0.33 10.6 3.8 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF342 PF03961.8 gi|313124890|ref|YP_004035154.1| - 0.26 9.6 15.2 0.37 9.1 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Mnd1 PF03962.10 gi|313124890|ref|YP_004035154.1| - 0.26 10.9 23.5 0.092 12.4 1.7 2.1 2 0 0 2 2 2 0 Mnd1 family Img2 PF05046.9 gi|313124890|ref|YP_004035154.1| - 0.27 11.4 3.5 15 5.8 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) Filament PF00038.16 gi|313124890|ref|YP_004035154.1| - 0.28 10.6 20.8 0.91 8.9 1.9 2.0 2 0 0 2 2 2 0 Intermediate filament protein RmuC PF02646.11 gi|313124890|ref|YP_004035154.1| - 0.28 9.9 13.7 1 8.1 3.6 2.1 2 0 0 2 2 2 0 RmuC family DUF724 PF05266.9 gi|313124890|ref|YP_004035154.1| - 0.28 10.7 14.6 1.2 8.7 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF3450 PF11932.3 gi|313124890|ref|YP_004035154.1| - 0.34 10.1 28.4 0.56 9.4 2.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Nup54 PF13874.1 gi|313124890|ref|YP_004035154.1| - 0.38 10.4 12.7 0.68 9.5 2.8 2.3 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Prominin PF05478.6 gi|313124890|ref|YP_004035154.1| - 0.4 8.1 7.7 1.6 6.1 0.3 2.0 2 0 0 2 2 2 0 Prominin Tmemb_cc2 PF10267.4 gi|313124890|ref|YP_004035154.1| - 0.43 9.1 12.8 0.78 8.2 2.7 2.0 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein ADIP PF11559.3 gi|313124890|ref|YP_004035154.1| - 0.48 10.3 18.3 0.72 9.7 4.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding V-ATPase_C PF03223.10 gi|313124890|ref|YP_004035154.1| - 0.49 9.2 7.0 0.27 10.0 0.1 2.1 2 0 0 2 2 2 0 V-ATPase subunit C DivIVA PF05103.8 gi|313124890|ref|YP_004035154.1| - 0.51 10.3 20.6 1 9.4 2.6 2.1 2 0 0 2 2 2 0 DivIVA protein bZIP_1 PF00170.16 gi|313124890|ref|YP_004035154.1| - 0.59 10.1 12.0 3.2 7.7 1.4 2.8 2 1 0 2 2 2 0 bZIP transcription factor TSC22 PF01166.13 gi|313124890|ref|YP_004035154.1| - 0.64 10.0 17.9 0.076 12.9 3.3 2.9 2 1 1 3 3 3 0 TSC-22/dip/bun family DUF4140 PF13600.1 gi|313124890|ref|YP_004035154.1| - 0.65 10.4 22.2 1.6 9.2 3.4 3.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) LUC7 PF03194.10 gi|313124890|ref|YP_004035154.1| - 0.67 9.4 13.2 2.1 7.7 0.9 2.1 2 0 0 2 2 2 0 LUC7 N_terminus MscS_porin PF12795.2 gi|313124890|ref|YP_004035154.1| - 0.7 9.1 32.1 0.15 11.3 4.1 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Cep57_MT_bd PF06657.8 gi|313124890|ref|YP_004035154.1| - 0.71 9.8 19.1 1.9 8.4 1.6 2.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 OmpH PF03938.9 gi|313124890|ref|YP_004035154.1| - 0.74 9.7 28.4 1 9.3 11.1 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DASH_Dam1 PF08653.5 gi|313124890|ref|YP_004035154.1| - 0.75 9.6 11.5 4.6 7.0 0.4 3.2 2 1 0 2 2 2 0 DASH complex subunit Dam1 MtrG PF04210.8 gi|313124890|ref|YP_004035154.1| - 0.79 9.4 3.1 4.1 7.1 0.1 2.6 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF948 PF06103.6 gi|313124890|ref|YP_004035154.1| - 0.88 9.4 11.8 1.6 8.6 0.7 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Nsp1_C PF05064.8 gi|313124890|ref|YP_004035154.1| - 1 8.9 19.9 1.5 8.4 2.1 2.4 2 0 0 2 2 2 0 Nsp1-like C-terminal region FliD_C PF07195.7 gi|313124890|ref|YP_004035154.1| - 1 8.5 14.4 1.6 7.9 5.6 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Phage_GP20 PF06810.6 gi|313124890|ref|YP_004035154.1| - 1.1 8.6 24.0 0.37 10.2 2.2 2.4 2 1 0 2 2 2 0 Phage minor structural protein GP20 FlaC_arch PF05377.6 gi|313124890|ref|YP_004035154.1| - 1.2 9.1 17.8 2.5 8.0 4.3 4.0 3 2 0 3 3 3 0 Flagella accessory protein C (FlaC) Hormone_1 PF00103.15 gi|313124890|ref|YP_004035154.1| - 1.2 8.4 5.8 3.5 6.9 1.1 2.1 2 0 0 2 2 2 0 Somatotropin hormone family FlxA PF14282.1 gi|313124890|ref|YP_004035154.1| - 1.2 9.0 43.2 3.7 7.5 18.3 2.3 2 0 0 2 2 2 0 FlxA-like protein IFT57 PF10498.4 gi|313124890|ref|YP_004035154.1| - 1.3 7.6 20.0 0.13 10.9 1.4 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Golgin_A5 PF09787.4 gi|313124890|ref|YP_004035154.1| - 1.4 7.3 26.3 0.034 12.6 2.1 2.0 1 1 1 2 2 2 0 Golgin subfamily A member 5 TPR_MLP1_2 PF07926.7 gi|313124890|ref|YP_004035154.1| - 1.4 8.6 25.6 0.55 9.9 2.4 2.4 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|313124890|ref|YP_004035154.1| - 1.4 8.9 16.7 1 9.4 1.4 2.6 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CCDC-167 PF15188.1 gi|313124890|ref|YP_004035154.1| - 1.5 8.8 11.9 1.2 9.1 1.7 2.5 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 DUF1664 PF07889.7 gi|313124890|ref|YP_004035154.1| - 1.5 8.6 17.3 1 9.1 1.9 2.6 1 1 2 3 3 2 0 Protein of unknown function (DUF1664) Synaptobrevin PF00957.16 gi|313124890|ref|YP_004035154.1| - 1.5 8.4 12.6 0.16 11.5 3.2 2.4 2 0 0 2 2 2 0 Synaptobrevin HR1 PF02185.11 gi|313124890|ref|YP_004035154.1| - 1.6 8.5 21.7 0.14 11.8 2.2 2.5 2 1 0 2 2 2 0 Hr1 repeat DUF4515 PF14988.1 gi|313124890|ref|YP_004035154.1| - 1.6 8.3 26.7 1.5 8.4 3.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4515) Occludin_ELL PF07303.8 gi|313124890|ref|YP_004035154.1| - 1.6 9.4 13.3 1.3 9.7 0.8 2.3 2 0 0 2 2 2 0 Occludin homology domain MCPsignal PF00015.16 gi|313124890|ref|YP_004035154.1| - 1.7 8.1 15.3 1.3e+02 1.9 10.0 2.1 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Dzip-like_N PF13815.1 gi|313124890|ref|YP_004035154.1| - 2.1 8.1 13.6 5.3 6.8 3.4 2.4 2 0 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Hemagglutinin PF00509.13 gi|313124890|ref|YP_004035154.1| - 2.1 6.3 7.9 1.1 7.3 0.1 2.0 2 0 0 2 2 2 0 Haemagglutinin DUF3373 PF11853.3 gi|313124890|ref|YP_004035154.1| - 2.3 6.6 15.3 0.16 10.4 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) DUF3847 PF12958.2 gi|313124890|ref|YP_004035154.1| - 2.5 7.9 17.4 1.2 8.9 3.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) RTBV_P46 PF06216.6 gi|313124890|ref|YP_004035154.1| - 2.6 6.8 7.5 4.9 5.8 0.1 2.0 2 0 0 2 2 2 0 Rice tungro bacilliform virus P46 protein AAA_23 PF13476.1 gi|313124890|ref|YP_004035154.1| - 2.6 8.3 23.7 3 8.1 5.9 2.1 2 0 0 2 2 2 0 AAA domain Med4 PF10018.4 gi|313124890|ref|YP_004035154.1| - 2.7 7.3 21.3 3 7.1 2.6 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Uds1 PF15456.1 gi|313124890|ref|YP_004035154.1| - 2.7 7.9 11.9 1.3 8.9 0.8 2.4 2 0 0 2 2 2 0 Up-regulated During Septation DUF2203 PF09969.4 gi|313124890|ref|YP_004035154.1| - 3.1 8.0 10.9 7.6 6.7 0.3 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) CDC37_N PF03234.9 gi|313124890|ref|YP_004035154.1| - 3.1 8.0 15.5 7.7 6.7 0.6 2.1 1 1 0 2 2 2 0 Cdc37 N terminal kinase binding Viral_P18 PF04521.8 gi|313124890|ref|YP_004035154.1| - 3.2 7.2 12.1 5.1 6.5 3.8 2.3 2 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein FH2 PF02181.18 gi|313124890|ref|YP_004035154.1| - 4 6.2 12.6 1.2 7.8 0.8 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain DUF2968 PF11180.3 gi|313124890|ref|YP_004035154.1| - 4.1 6.7 27.9 3.9 6.8 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) CorA PF01544.13 gi|313124890|ref|YP_004035154.1| - 4.2 6.3 17.4 0.7 8.8 1.2 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF4446 PF14584.1 gi|313124890|ref|YP_004035154.1| - 4.6 7.0 12.6 7.3 6.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) TMPIT PF07851.8 gi|313124890|ref|YP_004035154.1| - 5.3 6.0 9.1 14 4.6 0.1 2.1 2 0 0 2 2 2 0 TMPIT-like protein Cauli_DNA-bind PF03310.8 gi|313124890|ref|YP_004035154.1| - 5.4 6.8 8.4 11 5.8 1.6 2.2 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein TEX13 PF15186.1 gi|313124890|ref|YP_004035154.1| - 5.5 6.5 16.9 1.2 8.6 5.8 2.1 2 0 0 2 2 2 0 Testis-expressed sequence 13 protein family SPT16 PF08644.6 gi|313124890|ref|YP_004035154.1| - 5.5 6.8 13.7 5 6.9 0.3 2.1 1 1 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) Tup_N PF08581.5 gi|313124890|ref|YP_004035154.1| - 5.7 7.1 25.9 7.6 6.8 2.8 2.5 2 1 0 2 2 2 0 Tup N-terminal DUF1192 PF06698.6 gi|313124890|ref|YP_004035154.1| - 6.2 6.7 12.8 0.97 9.2 0.6 3.2 2 2 0 2 2 2 0 Protein of unknown function (DUF1192) DUF4559 PF15112.1 gi|313124890|ref|YP_004035154.1| - 6.7 5.7 13.2 6.7 5.7 4.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) Cep57_CLD_2 PF14197.1 gi|313124890|ref|YP_004035154.1| - 7.1 6.6 17.7 2.6 8.0 3.4 2.8 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 FliJ PF02050.11 gi|313124890|ref|YP_004035154.1| - 7.8 6.5 32.2 0.73 9.8 6.0 2.4 1 1 1 2 2 2 0 Flagellar FliJ protein Syntaxin PF00804.20 gi|313124890|ref|YP_004035154.1| - 8.1 6.6 21.5 3e+02 1.6 14.9 2.5 1 1 0 1 1 1 0 Syntaxin ParB PF08775.5 gi|313124890|ref|YP_004035154.1| - 8.3 6.7 11.7 19 5.5 3.5 2.2 2 0 0 2 2 2 0 ParB family ERM PF00769.14 gi|313124890|ref|YP_004035154.1| - 9.8 5.6 26.2 19 4.7 4.7 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Vps53_N PF04100.7 gi|313124890|ref|YP_004035154.1| - 9.9 4.8 13.0 6.5 5.4 0.6 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal Ribosomal_L18ae PF01775.12 gi|313124891|ref|YP_004035155.1| - 7e-10 38.8 0.0 7.4e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|313124892|ref|YP_004035156.1| - 1.1e-66 223.7 0.0 1.3e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|313124893|ref|YP_004035157.1| - 2.8e-22 78.1 0.0 3.2e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Mtf2_C PF14061.1 gi|313124893|ref|YP_004035157.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Polycomb-like MTF2 factor 2 Ribosomal_L39 PF00832.15 gi|313124894|ref|YP_004035158.1| - 1.6e-21 75.4 7.6 2e-21 75.1 5.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein DUF4650 PF15509.1 gi|313124894|ref|YP_004035158.1| - 0.12 11.2 0.4 0.1 11.5 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4650) EamA PF00892.15 gi|313124895|ref|YP_004035159.1| - 3.4e-29 101.4 28.8 9.8e-18 64.4 8.6 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|313124895|ref|YP_004035159.1| - 0.00067 19.8 6.3 0.00067 19.8 4.4 3.9 2 2 1 3 3 3 2 Multidrug resistance efflux transporter RseC_MucC PF04246.7 gi|313124895|ref|YP_004035159.1| - 0.041 13.4 0.2 0.041 13.4 0.1 4.2 2 1 3 5 5 5 0 Positive regulator of sigma(E), RseC/MucC UPF0233 PF06781.7 gi|313124895|ref|YP_004035159.1| - 1.4 8.6 8.7 0.77 9.4 0.3 3.7 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0233) TPT PF03151.11 gi|313124895|ref|YP_004035159.1| - 3 7.4 16.1 0.69 9.5 6.1 2.7 2 1 0 2 2 2 0 Triose-phosphate Transporter family LigT_PEase PF02834.11 gi|313124896|ref|YP_004035160.1| - 1.3e-23 82.7 0.0 3.3e-12 46.2 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|313124896|ref|YP_004035160.1| - 7.2e-17 61.5 0.1 8.7e-17 61.2 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|313124896|ref|YP_004035160.1| - 1.7e-10 40.9 0.0 2e-10 40.7 0.0 1.0 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CPDase PF07823.6 gi|313124896|ref|YP_004035160.1| - 0.0057 16.1 0.0 0.023 14.1 0.0 1.8 2 0 0 2 2 2 1 Cyclic phosphodiesterase-like protein Peptidase_S66 PF02016.10 gi|313124896|ref|YP_004035160.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.3 1 1 0 1 1 1 0 LD-carboxypeptidase Acetyltransf_2 PF00797.12 gi|313124897|ref|YP_004035161.1| - 2.8e-52 177.6 0.0 3.2e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 N-acetyltransferase TPR_11 PF13414.1 gi|313124898|ref|YP_004035162.1| - 7.2e-36 121.6 28.8 6.8e-14 51.2 2.7 3.2 1 1 3 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|313124898|ref|YP_004035162.1| - 7.1e-26 88.7 6.8 2.2e-08 33.3 0.2 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|313124898|ref|YP_004035162.1| - 1.9e-22 77.2 13.9 6.6e-07 28.7 0.4 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|313124898|ref|YP_004035162.1| - 2.1e-19 67.7 1.8 0.00022 20.8 0.2 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|313124898|ref|YP_004035162.1| - 3.6e-17 62.0 16.9 1.8e-07 30.9 1.9 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|313124898|ref|YP_004035162.1| - 3.9e-17 62.4 21.2 3e-08 34.1 1.6 3.6 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|313124898|ref|YP_004035162.1| - 4.6e-14 51.3 4.9 7.2e-05 22.6 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|313124898|ref|YP_004035162.1| - 1.4e-12 47.0 22.2 9.4e-05 22.7 0.4 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|313124898|ref|YP_004035162.1| - 7.3e-10 38.5 9.8 0.00086 19.1 0.9 3.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|313124898|ref|YP_004035162.1| - 1.7e-09 36.7 12.4 1.5e-05 24.4 0.3 5.0 4 1 1 5 5 5 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|313124898|ref|YP_004035162.1| - 4.2e-09 36.4 8.1 0.00059 19.9 1.0 2.3 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|313124898|ref|YP_004035162.1| - 3.5e-06 27.2 16.8 0.0013 18.9 1.4 3.3 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|313124898|ref|YP_004035162.1| - 3.6e-06 27.0 7.5 6.2 7.5 0.1 5.2 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|313124898|ref|YP_004035162.1| - 1e-05 25.3 20.2 0.013 15.4 0.2 4.6 5 0 0 5 5 4 3 Tetratricopeptide repeat DUF3856 PF12968.2 gi|313124898|ref|YP_004035162.1| - 0.00017 21.4 13.5 0.085 12.6 0.5 4.1 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) Apc5 PF12862.2 gi|313124898|ref|YP_004035162.1| - 0.00031 20.5 6.0 0.26 11.1 0.5 3.5 1 1 1 2 2 2 2 Anaphase-promoting complex subunit 5 TPR_4 PF07721.9 gi|313124898|ref|YP_004035162.1| - 0.0012 19.0 15.0 0.1 13.0 0.6 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat FAT PF02259.18 gi|313124898|ref|YP_004035162.1| - 0.016 14.2 3.4 0.33 9.9 1.7 2.5 1 1 0 1 1 1 0 FAT domain Fis1_TPR_C PF14853.1 gi|313124898|ref|YP_004035162.1| - 0.074 12.9 6.9 2.8 7.8 0.0 3.2 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.2 gi|313124898|ref|YP_004035162.1| - 0.14 12.2 7.4 3.7 7.5 0.2 2.4 2 1 0 2 2 2 0 Tetratrico peptide repeat TPR_20 PF14561.1 gi|313124898|ref|YP_004035162.1| - 0.23 11.5 11.5 0.21 11.7 1.2 3.3 1 1 2 3 3 3 0 Tetratricopeptide repeat DUF424 PF04242.8 gi|313124899|ref|YP_004035163.1| - 4.2e-29 100.4 0.0 4.7e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Aminotran_5 PF00266.14 gi|313124900|ref|YP_004035164.1| - 1.8e-150 500.8 0.0 2e-150 500.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|313124900|ref|YP_004035164.1| - 2.4e-12 46.5 0.3 4.2e-12 45.7 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|313124900|ref|YP_004035164.1| - 5.4e-09 35.5 0.1 8.2e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313124900|ref|YP_004035164.1| - 3.1e-05 22.4 0.1 5.6e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|313124900|ref|YP_004035164.1| - 0.0008 17.9 0.0 0.0017 16.8 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.8 gi|313124900|ref|YP_004035164.1| - 0.0017 17.1 0.0 0.0035 16.1 0.0 1.4 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase YPEB PF14620.1 gi|313124900|ref|YP_004035164.1| - 0.012 14.6 0.5 0.74 8.7 0.1 2.1 2 0 0 2 2 2 0 YpeB sporulation GDC-P PF02347.11 gi|313124900|ref|YP_004035164.1| - 0.096 11.3 0.1 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein NifU_N PF01592.11 gi|313124901|ref|YP_004035165.1| - 4.3e-29 101.0 0.2 5e-29 100.8 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|313124901|ref|YP_004035165.1| - 0.0039 16.8 0.1 0.01 15.4 0.0 1.6 1 1 1 2 2 2 1 Fe-S metabolism associated domain FluMu_gp41 PF10109.4 gi|313124901|ref|YP_004035165.1| - 0.076 12.9 0.7 0.16 11.8 0.5 1.6 1 1 0 1 1 1 0 Mu-like prophage FluMu protein gp41 Rad51 PF08423.6 gi|313124902|ref|YP_004035166.1| - 7.3e-78 261.0 0.1 3.6e-46 157.1 0.0 2.1 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|313124902|ref|YP_004035166.1| - 5e-12 45.8 0.0 7.1e-11 42.1 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|313124902|ref|YP_004035166.1| - 1e-09 38.0 0.0 1.5e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|313124902|ref|YP_004035166.1| - 1e-07 31.3 0.0 0.0002 20.5 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|313124902|ref|YP_004035166.1| - 1e-06 28.0 0.0 0.0001 21.7 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif KaiC PF06745.8 gi|313124902|ref|YP_004035166.1| - 3.6e-05 22.9 0.2 0.00025 20.2 0.2 2.2 1 1 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|313124902|ref|YP_004035166.1| - 6.1e-05 22.8 0.0 0.00019 21.2 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|313124902|ref|YP_004035166.1| - 0.00051 19.9 0.0 0.0017 18.2 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.3 gi|313124902|ref|YP_004035166.1| - 0.01 15.7 0.0 0.055 13.5 0.0 2.3 2 0 0 2 2 2 0 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|313124902|ref|YP_004035166.1| - 0.012 15.1 0.0 0.06 12.8 0.0 2.3 2 1 1 3 3 3 0 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|313124902|ref|YP_004035166.1| - 0.014 15.5 0.2 0.05 13.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain DUF4332 PF14229.1 gi|313124902|ref|YP_004035166.1| - 0.099 12.6 0.0 0.46 10.4 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4332) Peptidase_M48 PF01435.13 gi|313124905|ref|YP_004035169.1| - 3.6e-42 144.4 0.0 5e-42 143.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|313124905|ref|YP_004035169.1| - 1.3e-07 30.9 0.1 3.5e-05 22.9 0.0 2.3 2 1 0 2 2 2 2 BlaR1 peptidase M56 SprT-like PF10263.4 gi|313124905|ref|YP_004035169.1| - 0.051 13.2 0.0 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF1469 PF07332.6 gi|313124905|ref|YP_004035169.1| - 0.053 13.2 6.1 0.098 12.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Peptidase_MA_2 PF13485.1 gi|313124905|ref|YP_004035169.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily Pribosyltran PF00156.22 gi|313124906|ref|YP_004035170.1| - 2e-29 101.8 0.3 2.7e-29 101.4 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|313124906|ref|YP_004035170.1| - 4.5e-06 26.0 0.2 7.3e-06 25.3 0.0 1.4 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|313124906|ref|YP_004035170.1| - 0.00016 21.0 0.1 0.016 14.4 0.0 2.4 2 1 0 2 2 2 2 Phosphoribosyl transferase NMD3 PF04981.8 gi|313124907|ref|YP_004035171.1| - 2.2e-69 233.1 0.1 2.8e-69 232.8 0.1 1.1 1 0 0 1 1 1 1 NMD3 family zinc_ribbon_2 PF13240.1 gi|313124907|ref|YP_004035171.1| - 0.00085 18.7 1.7 2.2 7.8 0.1 3.4 3 0 0 3 3 3 2 zinc-ribbon domain FYVE PF01363.16 gi|313124907|ref|YP_004035171.1| - 0.0016 18.3 2.6 0.087 12.7 0.3 2.4 2 0 0 2 2 2 1 FYVE zinc finger DZR PF12773.2 gi|313124907|ref|YP_004035171.1| - 0.0033 17.2 8.1 0.98 9.2 5.7 3.1 1 1 1 2 2 2 1 Double zinc ribbon Rpr2 PF04032.11 gi|313124907|ref|YP_004035171.1| - 0.017 14.9 0.4 0.69 9.8 0.0 2.8 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nudix_N_2 PF14803.1 gi|313124907|ref|YP_004035171.1| - 0.044 13.4 15.1 1.2 8.9 1.6 3.8 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.9 gi|313124907|ref|YP_004035171.1| - 0.05 13.5 3.7 12 5.8 0.1 3.5 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|313124907|ref|YP_004035171.1| - 0.085 12.0 8.7 2.5 7.4 0.3 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|313124907|ref|YP_004035171.1| - 3.6 7.1 13.1 0.97 9.0 0.2 3.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain UPF0175 PF03683.8 gi|313124908|ref|YP_004035172.1| - 4.2e-06 26.1 0.0 4.7e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) ESX-1_EspG PF14011.1 gi|313124908|ref|YP_004035172.1| - 0.0078 15.4 1.3 0.0083 15.4 0.9 1.0 1 0 0 1 1 1 1 EspG family Helicase_C_2 PF13307.1 gi|313124909|ref|YP_004035173.1| - 1.1e-24 87.2 0.0 1.7e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|313124909|ref|YP_004035173.1| - 9.2e-07 28.4 0.0 1.6e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|313124909|ref|YP_004035173.1| - 4.9e-05 22.8 0.0 0.094 12.2 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|313124909|ref|YP_004035173.1| - 0.00013 21.8 0.0 0.044 13.6 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|313124909|ref|YP_004035173.1| - 0.00018 21.1 0.1 0.00047 19.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|313124909|ref|YP_004035173.1| - 0.00064 19.8 0.0 0.0046 17.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|313124909|ref|YP_004035173.1| - 0.0015 18.1 1.0 0.021 14.3 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|313124909|ref|YP_004035173.1| - 0.0028 17.1 0.4 0.88 8.9 0.1 2.4 1 1 0 2 2 2 2 AAA-like domain DUF2075 PF09848.4 gi|313124909|ref|YP_004035173.1| - 0.011 14.6 0.0 2.1 7.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|313124909|ref|YP_004035173.1| - 0.013 15.5 0.2 0.065 13.2 0.0 2.3 2 1 0 3 3 3 0 AAA ATPase domain DXP_redisom_C PF08436.7 gi|313124909|ref|YP_004035173.1| - 0.07 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AAA PF00004.24 gi|313124909|ref|YP_004035173.1| - 0.086 13.0 0.1 1 9.5 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|313124909|ref|YP_004035173.1| - 0.089 12.0 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.16 gi|313124909|ref|YP_004035173.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CxxCxxCC PF03692.10 gi|313124911|ref|YP_004035175.1| - 5.1e-06 26.8 0.9 0.0036 17.7 0.0 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain Galanin PF01296.13 gi|313124911|ref|YP_004035175.1| - 0.11 12.3 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Galanin NAD_binding_10 PF13460.1 gi|313124912|ref|YP_004035176.1| - 2.6e-19 69.9 0.6 1.9e-10 41.0 0.1 2.2 2 0 0 2 2 2 2 NADH(P)-binding Epimerase PF01370.16 gi|313124912|ref|YP_004035176.1| - 1.7e-11 43.9 0.3 3e-08 33.3 0.0 2.4 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|313124912|ref|YP_004035176.1| - 8.3e-09 35.0 0.0 2e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family NAD_binding_4 PF07993.7 gi|313124912|ref|YP_004035176.1| - 2.6e-06 26.5 0.0 6.1e-06 25.3 0.0 1.7 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|313124912|ref|YP_004035176.1| - 2e-05 23.6 0.0 0.0011 17.8 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313124912|ref|YP_004035176.1| - 0.00011 20.9 0.0 0.00072 18.3 0.0 1.9 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|313124912|ref|YP_004035176.1| - 0.006 16.5 0.2 0.012 15.4 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.15 gi|313124912|ref|YP_004035176.1| - 0.007 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|313124912|ref|YP_004035176.1| - 0.015 15.5 0.0 0.049 13.9 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Peptidase_M16 PF00675.15 gi|313124914|ref|YP_004035178.1| - 0.024 14.4 0.0 0.026 14.3 0.0 1.0 1 0 0 1 1 1 0 Insulinase (Peptidase family M16) IRF-2BP1_2 PF11261.3 gi|313124914|ref|YP_004035178.1| - 0.044 13.2 0.0 0.052 13.0 0.0 1.1 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger PHP PF02811.14 gi|313124917|ref|YP_004035181.1| - 5e-14 52.4 0.0 9.6e-14 51.5 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|313124917|ref|YP_004035181.1| - 0.00071 19.0 0.2 0.0043 16.5 0.0 2.3 2 0 0 2 2 2 1 PHP-associated PyrI_C PF02748.10 gi|313124918|ref|YP_004035182.1| - 0.49 9.8 3.8 0.54 9.7 1.4 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain YyzF PF14116.1 gi|313124918|ref|YP_004035182.1| - 3.6 7.6 6.2 0.9 9.5 1.1 2.0 2 0 0 2 2 2 0 YyzF-like protein SNARE_assoc PF09335.6 gi|313124920|ref|YP_004035184.1| - 2.6e-09 37.3 3.1 4.7e-09 36.5 2.1 1.5 1 1 0 1 1 1 1 SNARE associated Golgi protein PEN-2 PF10251.4 gi|313124920|ref|YP_004035184.1| - 0.0097 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Presenilin enhancer-2 subunit of gamma secretase ALAD PF00490.16 gi|313124921|ref|YP_004035185.1| - 1.3e-142 474.5 0.3 1.4e-142 474.3 0.2 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ammonium_transp PF00909.16 gi|313124922|ref|YP_004035186.1| - 7.5e-96 321.0 40.7 8.7e-96 320.8 28.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|313124923|ref|YP_004035187.1| - 2.6e-34 117.7 0.0 3e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Abi PF02517.11 gi|313124924|ref|YP_004035188.1| - 4.9e-09 36.2 1.8 4.9e-09 36.2 1.2 2.0 2 1 0 2 2 2 1 CAAX protease self-immunity Aminotran_3 PF00202.16 gi|313124925|ref|YP_004035189.1| - 1.2e-65 221.6 0.0 1.5e-65 221.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|313124925|ref|YP_004035189.1| - 0.0074 15.2 0.0 0.012 14.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II DUF2628 PF10947.3 gi|313124926|ref|YP_004035190.1| - 0.054 13.2 3.6 0.047 13.4 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) DUF1370 PF07114.6 gi|313124926|ref|YP_004035190.1| - 0.11 11.7 0.3 0.16 11.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1370) Claudin_2 PF13903.1 gi|313124926|ref|YP_004035190.1| - 0.68 9.6 7.1 1.1 8.9 5.0 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction PTS_EIIC_2 PF13303.1 gi|313124927|ref|YP_004035191.1| - 0.0013 17.7 5.0 0.0015 17.4 3.5 1.0 1 0 0 1 1 1 1 Phosphotransferase system, EIIC Tmemb_170 PF10190.4 gi|313124927|ref|YP_004035191.1| - 0.57 10.2 6.8 0.069 13.2 0.7 2.0 1 1 1 2 2 2 0 Putative transmembrane protein 170 ABC2_membrane_3 PF12698.2 gi|313124927|ref|YP_004035191.1| - 3 6.7 18.9 38 3.1 13.1 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein PQQ_2 PF13360.1 gi|313124928|ref|YP_004035192.1| - 5.7e-25 88.1 8.5 6.2e-14 52.0 0.9 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|313124928|ref|YP_004035192.1| - 5.2e-16 58.3 29.3 0.00026 21.1 0.0 8.0 5 4 2 7 7 7 5 PQQ-like domain PQQ PF01011.16 gi|313124928|ref|YP_004035192.1| - 1.5e-14 52.6 5.8 0.0031 16.9 0.0 6.5 6 0 0 6 6 6 4 PQQ enzyme repeat Porphobil_deam PF01379.15 gi|313124929|ref|YP_004035193.1| - 4e-64 215.4 0.0 4.6e-50 169.5 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|313124929|ref|YP_004035193.1| - 6.6e-13 48.5 0.1 1.6e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain WGG PF10273.4 gi|313124929|ref|YP_004035193.1| - 0.067 13.2 0.1 0.25 11.4 0.0 2.0 3 0 0 3 3 3 0 Pre-rRNA-processing protein TSR2 Uds1 PF15456.1 gi|313124929|ref|YP_004035193.1| - 0.11 12.5 2.2 0.13 12.2 0.6 1.9 2 0 0 2 2 2 0 Up-regulated During Septation TP_methylase PF00590.15 gi|313124930|ref|YP_004035194.1| - 1.8e-53 181.3 0.6 2.1e-53 181.1 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|313124930|ref|YP_004035194.1| - 0.072 13.2 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 Radical SAM superfamily HEM4 PF02602.10 gi|313124931|ref|YP_004035195.1| - 3.4e-43 147.5 0.0 4e-43 147.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DHH PF01368.15 gi|313124932|ref|YP_004035196.1| - 7.4e-14 51.6 0.0 1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|313124932|ref|YP_004035196.1| - 2.8e-13 49.3 1.6 6.8e-13 48.1 1.1 1.7 1 0 0 1 1 1 1 DHHA1 domain ABC2_membrane_4 PF12730.2 gi|313124933|ref|YP_004035197.1| - 3.4e-08 32.9 5.0 3.4e-08 32.9 3.4 3.1 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313124933|ref|YP_004035197.1| - 3.9e-05 22.6 5.6 3.9e-05 22.6 3.9 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313124933|ref|YP_004035197.1| - 0.0034 16.4 8.6 0.0034 16.4 5.9 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313124933|ref|YP_004035197.1| - 0.0097 15.2 6.7 0.016 14.5 1.0 2.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313124934|ref|YP_004035198.1| - 8.1e-28 97.4 0.0 1.2e-27 96.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313124934|ref|YP_004035198.1| - 1.4e-09 38.3 0.3 8.8e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313124934|ref|YP_004035198.1| - 1.6e-05 24.3 0.1 3e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313124934|ref|YP_004035198.1| - 0.00024 21.5 0.0 0.00041 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313124934|ref|YP_004035198.1| - 0.00075 18.6 0.0 0.082 11.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|313124934|ref|YP_004035198.1| - 0.0043 16.3 0.1 0.066 12.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|313124934|ref|YP_004035198.1| - 0.014 15.2 0.1 0.092 12.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313124934|ref|YP_004035198.1| - 0.024 13.8 0.0 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MukB PF04310.7 gi|313124934|ref|YP_004035198.1| - 0.057 12.7 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal DUF2813 PF11398.3 gi|313124934|ref|YP_004035198.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) HTH_11 PF08279.7 gi|313124935|ref|YP_004035199.1| - 3e-08 33.1 0.0 7.2e-08 31.9 0.0 1.6 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|313124935|ref|YP_004035199.1| - 5.4e-08 32.5 0.0 1.1e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313124935|ref|YP_004035199.1| - 1.2e-07 31.2 0.0 2.6e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313124935|ref|YP_004035199.1| - 5.6e-07 28.8 0.1 1.8e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|313124935|ref|YP_004035199.1| - 2.1e-06 27.2 0.1 5e-06 25.9 0.0 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|313124935|ref|YP_004035199.1| - 1.7e-05 24.3 0.0 3.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|313124935|ref|YP_004035199.1| - 3.6e-05 23.2 0.0 7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|313124935|ref|YP_004035199.1| - 6.1e-05 22.4 0.0 0.00014 21.3 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|313124935|ref|YP_004035199.1| - 6.4e-05 22.5 0.1 9.9e-05 21.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|313124935|ref|YP_004035199.1| - 6.7e-05 22.9 0.0 9.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|313124935|ref|YP_004035199.1| - 9.4e-05 21.9 0.0 0.00019 20.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|313124935|ref|YP_004035199.1| - 0.0001 21.7 0.0 0.00023 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|313124935|ref|YP_004035199.1| - 0.00011 21.8 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|313124935|ref|YP_004035199.1| - 0.00012 21.9 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|313124935|ref|YP_004035199.1| - 0.00029 21.0 0.0 0.00044 20.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313124935|ref|YP_004035199.1| - 0.00034 20.8 0.0 0.00068 19.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|313124935|ref|YP_004035199.1| - 0.00037 20.5 0.0 0.00058 19.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR PF03551.9 gi|313124935|ref|YP_004035199.1| - 0.00044 19.9 0.0 0.00066 19.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Tnp_ISL3 PF13542.1 gi|313124935|ref|YP_004035199.1| - 0.00062 18.8 0.0 0.0012 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.10 gi|313124935|ref|YP_004035199.1| - 0.00071 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|313124935|ref|YP_004035199.1| - 0.00095 19.2 0.0 0.0011 19.0 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn helix HTH_6 PF01418.12 gi|313124935|ref|YP_004035199.1| - 0.0011 18.6 0.1 0.0025 17.4 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family FUR PF01475.14 gi|313124935|ref|YP_004035199.1| - 0.0018 18.2 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family Sigma70_r4_2 PF08281.7 gi|313124935|ref|YP_004035199.1| - 0.0051 16.2 0.1 0.0093 15.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.16 gi|313124935|ref|YP_004035199.1| - 0.0069 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TetR_N PF00440.18 gi|313124935|ref|YP_004035199.1| - 0.0084 15.7 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.1 gi|313124935|ref|YP_004035199.1| - 0.013 15.2 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_psq PF05225.11 gi|313124935|ref|YP_004035199.1| - 0.014 14.9 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Fe_dep_repress PF01325.14 gi|313124935|ref|YP_004035199.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.8 gi|313124935|ref|YP_004035199.1| - 0.014 15.6 0.0 0.032 14.5 0.0 1.5 2 0 0 2 2 1 0 Mga helix-turn-helix domain HxlR PF01638.12 gi|313124935|ref|YP_004035199.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Sigma70_r4 PF04545.11 gi|313124935|ref|YP_004035199.1| - 0.019 14.2 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Cdc6_C PF09079.6 gi|313124935|ref|YP_004035199.1| - 0.029 14.1 0.1 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal HTH_3 PF01381.17 gi|313124935|ref|YP_004035199.1| - 0.029 14.2 0.0 0.067 13.0 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix HTH_AraC PF00165.18 gi|313124935|ref|YP_004035199.1| - 0.034 13.9 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Sigma70_ECF PF07638.6 gi|313124935|ref|YP_004035199.1| - 0.059 13.0 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_40 PF14493.1 gi|313124935|ref|YP_004035199.1| - 0.066 13.4 0.0 0.092 12.9 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|313124935|ref|YP_004035199.1| - 0.076 12.7 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_Tnp_1 PF01527.15 gi|313124935|ref|YP_004035199.1| - 0.079 12.9 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Transposase CENP-B_N PF04218.8 gi|313124935|ref|YP_004035199.1| - 0.079 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MerR PF00376.18 gi|313124935|ref|YP_004035199.1| - 0.092 12.3 0.1 0.55 9.8 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein DUF1492 PF07374.6 gi|313124935|ref|YP_004035199.1| - 0.1 12.7 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_31 PF13560.1 gi|313124935|ref|YP_004035199.1| - 0.11 12.6 0.1 0.31 11.2 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_30 PF13556.1 gi|313124935|ref|YP_004035199.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain 7TMR-DISM_7TM PF07695.6 gi|313124936|ref|YP_004035200.1| - 0.016 14.8 5.9 0.022 14.4 4.1 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF3112 PF11309.3 gi|313124936|ref|YP_004035200.1| - 0.22 11.2 3.0 0.25 11.0 1.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3112) SnoaL PF07366.7 gi|313124937|ref|YP_004035201.1| - 7e-31 106.4 0.0 8e-31 106.2 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|313124937|ref|YP_004035201.1| - 1.2e-22 80.2 0.1 1.4e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|313124937|ref|YP_004035201.1| - 0.0069 16.5 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Scaffolding_pro PF11418.3 gi|313124937|ref|YP_004035201.1| - 0.099 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Phi29 scaffolding protein HTH_10 PF04967.7 gi|313124938|ref|YP_004035202.1| - 3.2e-14 52.2 0.1 5.6e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|313124938|ref|YP_004035202.1| - 0.00031 20.2 0.2 0.0017 17.8 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313124938|ref|YP_004035202.1| - 0.0042 16.8 0.2 0.012 15.3 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313124938|ref|YP_004035202.1| - 0.0061 15.8 0.2 0.035 13.4 0.1 2.2 2 1 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|313124938|ref|YP_004035202.1| - 0.0078 15.8 0.1 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 MarR family Sec62 PF03839.11 gi|313124939|ref|YP_004035203.1| - 0.12 11.7 0.5 0.16 11.3 0.4 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 NifU PF01106.12 gi|313124942|ref|YP_004035206.1| - 2.2e-10 40.1 0.0 2.9e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain FIST PF08495.5 gi|313124942|ref|YP_004035206.1| - 0.02 14.0 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 FIST N domain Sulfatase PF00884.18 gi|313124943|ref|YP_004035207.1| - 1.1e-45 156.1 0.4 1.7e-45 155.5 0.3 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313124943|ref|YP_004035207.1| - 3.7e-13 49.5 5.3 1.2e-11 44.5 3.7 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|313124943|ref|YP_004035207.1| - 0.018 13.8 0.0 0.033 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|313124943|ref|YP_004035207.1| - 0.24 9.7 0.0 0.32 9.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) ApbA_C PF08546.6 gi|313124944|ref|YP_004035208.1| - 3.1e-33 114.4 0.4 4.5e-33 113.9 0.2 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|313124944|ref|YP_004035208.1| - 1.3e-26 92.8 0.5 2.1e-26 92.1 0.1 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|313124944|ref|YP_004035208.1| - 0.0022 17.9 1.5 0.0034 17.3 0.1 2.2 2 1 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|313124944|ref|YP_004035208.1| - 0.078 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PRC PF05239.11 gi|313124945|ref|YP_004035209.1| - 0.0066 16.2 0.1 0.0088 15.8 0.1 1.2 1 0 0 1 1 1 1 PRC-barrel domain HypA PF01155.14 gi|313124945|ref|YP_004035209.1| - 0.0081 15.8 0.1 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|313124945|ref|YP_004035209.1| - 0.013 15.3 4.0 1.4 8.8 0.7 2.3 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|313124945|ref|YP_004035209.1| - 0.14 11.4 1.1 3.2 7.0 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.8 gi|313124946|ref|YP_004035210.1| - 0 1317.6 0.6 0 1317.2 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.2 gi|313124946|ref|YP_004035210.1| - 0.0047 16.7 19.6 0.058 13.2 9.1 3.1 2 1 1 3 3 3 2 Double zinc ribbon tRNA-synt_1g PF09334.6 gi|313124946|ref|YP_004035210.1| - 0.41 9.2 1.3 0.75 8.3 0.9 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (M) Sigma70_ner PF04546.8 gi|313124946|ref|YP_004035210.1| - 1.8 8.1 5.4 3.8 7.0 3.8 1.5 1 0 0 1 1 1 0 Sigma-70, non-essential region TerY-C PF15616.1 gi|313124946|ref|YP_004035210.1| - 3.7 7.4 9.2 3.6 7.5 1.4 2.3 1 1 1 2 2 2 0 TerY-C metal binding domain zf-Mss51 PF13824.1 gi|313124946|ref|YP_004035210.1| - 4.4 7.2 14.6 21 5.0 2.7 3.9 3 1 1 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF296 PF03479.10 gi|313124947|ref|YP_004035211.1| - 3.1e-26 91.3 0.0 3.4e-26 91.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) CAP59_mtransfer PF11735.3 gi|313124947|ref|YP_004035211.1| - 0.048 12.8 0.0 0.054 12.7 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 CBS PF00571.23 gi|313124950|ref|YP_004035214.1| - 8.7e-36 121.4 15.4 2.4e-11 43.2 1.0 4.1 4 0 0 4 4 4 4 CBS domain DUF1320 PF07030.7 gi|313124950|ref|YP_004035214.1| - 0.3 10.8 2.3 1.4 8.6 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1320) tRNA-synt_2b PF00587.20 gi|313124951|ref|YP_004035215.1| - 1.2e-52 178.0 0.0 1.6e-52 177.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|313124951|ref|YP_004035215.1| - 6.1e-21 74.1 0.0 1.8e-20 72.6 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|313124951|ref|YP_004035215.1| - 0.014 14.5 3.7 0.015 14.4 1.1 2.2 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313124951|ref|YP_004035215.1| - 0.22 11.2 0.2 15 5.4 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNL PF05180.7 gi|313124951|ref|YP_004035215.1| - 0.26 11.0 0.5 1.6 8.5 0.1 2.4 3 0 0 3 3 3 0 DNL zinc finger zinc_ribbon_2 PF13240.1 gi|313124951|ref|YP_004035215.1| - 1.5 8.3 5.7 0.39 10.2 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|313124951|ref|YP_004035215.1| - 1.9 8.2 5.1 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TrkA_C PF02080.16 gi|313124953|ref|YP_004035217.1| - 1.6e-21 75.6 0.2 4.3e-21 74.2 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|313124954|ref|YP_004035218.1| - 7.9e-51 172.7 44.3 9.6e-51 172.4 30.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Arginosuc_synth PF00764.14 gi|313124956|ref|YP_004035220.1| - 4.8e-143 476.8 0.0 5.6e-143 476.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|313124956|ref|YP_004035220.1| - 9.7e-06 25.2 0.3 2.7e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|313124956|ref|YP_004035220.1| - 0.00012 21.3 0.0 0.00022 20.5 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|313124956|ref|YP_004035220.1| - 0.00082 18.3 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|313124956|ref|YP_004035220.1| - 0.0039 15.8 0.0 0.0058 15.2 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase RHH_1 PF01402.16 gi|313124956|ref|YP_004035220.1| - 0.049 13.5 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Ad_cyc_g-alpha PF08509.6 gi|313124956|ref|YP_004035220.1| - 0.16 11.3 0.0 0.55 9.5 0.0 1.8 2 0 0 2 2 2 0 Adenylate cyclase G-alpha binding domain Lyase_1 PF00206.15 gi|313124957|ref|YP_004035221.1| - 1.6e-56 191.7 1.0 3.9e-56 190.5 0.1 1.8 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|313124957|ref|YP_004035221.1| - 2.1e-13 50.1 1.4 9.1e-13 48.0 1.0 2.2 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal RimK PF08443.6 gi|313124959|ref|YP_004035223.1| - 1.1e-41 142.4 0.0 1.6e-41 141.8 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|313124959|ref|YP_004035223.1| - 1.4e-16 60.7 0.1 2.2e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|313124959|ref|YP_004035223.1| - 3.9e-10 39.1 0.0 6.2e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|313124959|ref|YP_004035223.1| - 4.4e-10 38.8 0.0 6.1e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|313124959|ref|YP_004035223.1| - 6.7e-09 35.8 0.0 1e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|313124959|ref|YP_004035223.1| - 1.8e-06 27.4 0.1 5.6e-06 25.8 0.0 1.8 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|313124959|ref|YP_004035223.1| - 6.3e-06 25.6 0.0 1.7e-05 24.2 0.0 1.8 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|313124959|ref|YP_004035223.1| - 0.00024 20.4 0.0 0.00099 18.3 0.0 2.1 1 1 1 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|313124959|ref|YP_004035223.1| - 0.022 14.1 0.0 0.097 12.0 0.0 1.9 1 1 0 2 2 2 0 D-ala D-ala ligase C-terminus Semialdhyde_dh PF01118.19 gi|313124960|ref|YP_004035224.1| - 5.9e-29 100.8 0.0 1.1e-28 99.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313124960|ref|YP_004035224.1| - 0.0011 18.9 0.0 0.0028 17.7 0.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|313124960|ref|YP_004035224.1| - 0.0022 17.8 0.0 0.0057 16.5 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|313124960|ref|YP_004035224.1| - 0.023 15.1 0.0 0.12 12.8 0.0 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_4 PF07993.7 gi|313124960|ref|YP_004035224.1| - 0.071 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein Epimerase PF01370.16 gi|313124960|ref|YP_004035224.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.23 gi|313124961|ref|YP_004035225.1| - 1.2e-32 113.3 4.4 1.5e-32 113.0 3.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Arteri_Gl PF00951.13 gi|313124961|ref|YP_004035225.1| - 0.11 12.0 0.8 0.22 11.1 0.6 1.4 1 0 0 1 1 1 0 Arterivirus GL envelope glycoprotein Aminotran_3 PF00202.16 gi|313124962|ref|YP_004035226.1| - 2.2e-100 335.8 0.2 2.6e-100 335.5 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|313124962|ref|YP_004035226.1| - 0.0011 17.3 0.0 0.012 13.9 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M20 PF01546.23 gi|313124963|ref|YP_004035227.1| - 7.3e-27 94.0 0.2 9.5e-27 93.7 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|313124963|ref|YP_004035227.1| - 6.1e-06 25.9 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|313124963|ref|YP_004035227.1| - 0.021 14.5 0.4 0.14 11.9 0.1 2.2 2 1 0 2 2 2 0 Peptidase family M28 OTCace_N PF02729.16 gi|313124964|ref|YP_004035228.1| - 9.8e-48 161.4 0.0 1.5e-47 160.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|313124964|ref|YP_004035228.1| - 1.1e-46 158.6 0.0 2.2e-46 157.5 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF1440 PF07274.7 gi|313124965|ref|YP_004035229.1| - 0.0017 18.3 2.7 0.0018 18.2 1.1 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1440) YqhR PF11085.3 gi|313124965|ref|YP_004035229.1| - 0.075 12.5 8.8 0.34 10.4 6.1 1.8 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF4150 PF13665.1 gi|313124965|ref|YP_004035229.1| - 0.26 11.2 0.2 0.26 11.2 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4150) DUF1129 PF06570.6 gi|313124965|ref|YP_004035229.1| - 0.41 9.9 8.7 2 7.6 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF3147 PF11345.3 gi|313124965|ref|YP_004035229.1| - 1.3 9.0 15.5 1.7 8.7 7.7 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3147) RseC_MucC PF04246.7 gi|313124965|ref|YP_004035229.1| - 2.2 7.8 7.9 0.19 11.2 1.0 2.1 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC SepZ PF06066.6 gi|313124965|ref|YP_004035229.1| - 2.5 8.1 8.2 6.1 6.9 2.1 2.3 2 0 0 2 2 2 0 SepZ DUF983 PF06170.7 gi|313124965|ref|YP_004035229.1| - 4.5 7.4 10.7 0.41 10.8 0.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF983) YqhR PF11085.3 gi|313124966|ref|YP_004035230.1| - 0.4 10.1 4.3 2.2 7.7 3.0 2.1 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF2938 PF11158.3 gi|313124966|ref|YP_004035230.1| - 5.7 6.2 11.6 1.1 8.5 5.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2938) Helicase_C_2 PF13307.1 gi|313124967|ref|YP_004035231.1| - 2.5e-35 121.9 0.0 1e-34 119.9 0.0 2.0 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|313124967|ref|YP_004035231.1| - 6e-26 90.9 0.4 1.1e-25 90.0 0.3 1.5 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|313124967|ref|YP_004035231.1| - 6.8e-10 38.6 4.2 2.1e-07 30.6 0.7 3.4 2 1 1 3 3 3 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|313124967|ref|YP_004035231.1| - 1.6e-05 24.0 0.5 0.00079 18.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zot PF05707.7 gi|313124967|ref|YP_004035231.1| - 2.3e-05 23.9 0.2 0.014 14.8 0.0 2.4 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) ResIII PF04851.10 gi|313124967|ref|YP_004035231.1| - 3.3e-05 23.8 0.3 0.00079 19.2 0.2 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|313124967|ref|YP_004035231.1| - 6e-05 22.7 0.2 0.00017 21.2 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|313124967|ref|YP_004035231.1| - 6.4e-05 22.1 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA PF00004.24 gi|313124967|ref|YP_004035231.1| - 0.0014 18.8 0.4 0.91 9.7 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|313124967|ref|YP_004035231.1| - 0.0019 17.7 2.2 0.0034 16.9 0.1 2.3 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|313124967|ref|YP_004035231.1| - 0.0046 16.2 0.1 0.012 14.9 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|313124967|ref|YP_004035231.1| - 0.0061 16.6 5.1 0.083 13.0 0.8 2.9 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313124967|ref|YP_004035231.1| - 0.011 15.6 3.0 0.39 10.6 1.9 3.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_11 PF13086.1 gi|313124967|ref|YP_004035231.1| - 0.013 15.0 0.2 0.037 13.6 0.3 1.8 2 1 0 2 2 2 0 AAA domain AAA_34 PF13872.1 gi|313124967|ref|YP_004035231.1| - 0.097 11.4 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 SecA_DEAD PF07517.9 gi|313124967|ref|YP_004035231.1| - 0.46 9.7 2.8 0.79 8.9 0.0 2.5 3 0 0 3 3 3 0 SecA DEAD-like domain p450 PF00067.17 gi|313124968|ref|YP_004035232.1| - 2.8e-90 303.0 0.0 3.4e-90 302.8 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 2_5_RNA_ligase2 PF13563.1 gi|313124969|ref|YP_004035233.1| - 1.4e-19 70.2 0.0 2e-19 69.8 0.0 1.3 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|313124969|ref|YP_004035233.1| - 3.7e-10 39.6 0.1 0.00014 21.7 0.0 2.7 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|313124969|ref|YP_004035233.1| - 8.3e-06 25.6 0.0 9.9e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain TcpE PF12648.2 gi|313124970|ref|YP_004035234.1| - 0.95 9.6 5.3 1.6 8.8 3.6 1.4 1 1 0 1 1 1 0 TcpE family Spectrin PF00435.16 gi|313124972|ref|YP_004035236.1| - 0.0065 16.7 0.2 0.0065 16.7 0.1 1.5 2 0 0 2 2 2 1 Spectrin repeat SlyX PF04102.7 gi|313124972|ref|YP_004035236.1| - 0.062 13.6 0.2 0.35 11.2 0.1 1.9 2 0 0 2 2 2 0 SlyX Flu_NS2 PF00601.14 gi|313124972|ref|YP_004035236.1| - 0.11 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) DUF4157 PF13699.1 gi|313124974|ref|YP_004035238.1| - 7.8e-30 102.8 1.4 7.8e-30 102.8 1.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|313124974|ref|YP_004035238.1| - 0.26 11.3 1.7 3.2 7.7 0.1 2.6 3 0 0 3 3 3 0 Peptidase MA superfamily Band_7 PF01145.20 gi|313124975|ref|YP_004035239.1| - 2.1e-34 118.9 1.0 2.1e-34 118.9 0.7 1.6 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|313124975|ref|YP_004035239.1| - 0.0055 16.2 0.1 0.015 14.8 0.0 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF3275 PF11679.3 gi|313124975|ref|YP_004035239.1| - 0.0087 15.7 1.1 0.015 14.8 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3275) TauE PF01925.14 gi|313124977|ref|YP_004035241.1| - 1.3e-30 106.6 22.7 1.3e-30 106.6 15.8 1.5 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE UvrB PF12344.3 gi|313124979|ref|YP_004035243.1| - 4.6e-21 74.0 0.3 1e-20 72.9 0.2 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|313124979|ref|YP_004035243.1| - 1.3e-14 53.7 0.0 3.7e-14 52.3 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|313124979|ref|YP_004035243.1| - 1.1e-10 41.5 0.1 8.7e-10 38.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|313124979|ref|YP_004035243.1| - 9.1e-08 31.3 8.1 9.1e-08 31.3 5.6 3.1 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.24 gi|313124979|ref|YP_004035243.1| - 2.4e-05 23.9 0.1 0.0012 18.3 0.0 3.1 2 1 1 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|313124979|ref|YP_004035243.1| - 0.0025 17.5 0.2 3.9 7.2 0.0 3.6 4 0 0 4 4 4 1 Part of AAA domain UB2H PF14814.1 gi|313124979|ref|YP_004035243.1| - 0.0031 17.2 0.1 0.025 14.2 0.0 2.6 2 1 0 2 2 2 1 Bifunctional transglycosylase second domain FlaG PF03646.10 gi|313124979|ref|YP_004035243.1| - 0.015 15.3 1.6 0.26 11.4 0.5 2.7 2 0 0 2 2 2 0 FlaG protein DUF87 PF01935.12 gi|313124979|ref|YP_004035243.1| - 0.096 12.4 0.2 0.096 12.4 0.1 2.7 3 1 0 3 3 3 0 Domain of unknown function DUF87 RPN7 PF10602.4 gi|313124979|ref|YP_004035243.1| - 0.11 11.8 1.2 8.8 5.6 0.1 2.9 3 0 0 3 3 3 0 26S proteasome subunit RPN7 Apolipoprotein PF01442.13 gi|313124980|ref|YP_004035244.1| - 0.002 17.6 3.3 0.0025 17.3 2.3 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain YtxH PF12732.2 gi|313124980|ref|YP_004035244.1| - 0.0037 17.5 4.8 0.44 10.9 3.3 2.1 1 1 0 1 1 1 1 YtxH-like protein ATP-synt_B PF00430.13 gi|313124980|ref|YP_004035244.1| - 0.0097 15.7 7.9 0.48 10.2 0.7 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) Cytochrom_B562 PF07361.6 gi|313124980|ref|YP_004035244.1| - 0.029 14.7 1.0 0.096 13.1 0.1 1.9 1 1 1 2 2 2 0 Cytochrome b562 cwf21 PF08312.7 gi|313124980|ref|YP_004035244.1| - 0.052 13.4 4.0 0.21 11.4 2.8 2.2 1 1 1 2 2 2 0 cwf21 domain Exonuc_VII_L PF02601.10 gi|313124980|ref|YP_004035244.1| - 0.054 12.6 0.4 0.063 12.4 0.3 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit PilJ PF13675.1 gi|313124980|ref|YP_004035244.1| - 0.12 12.7 3.2 0.26 11.6 2.2 1.5 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Transpep_BrtH PF14399.1 gi|313124980|ref|YP_004035244.1| - 0.15 11.2 2.9 0.17 11.1 2.0 1.1 1 0 0 1 1 1 0 NlpC/p60-like transpeptidase DUF2524 PF10732.4 gi|313124980|ref|YP_004035244.1| - 0.31 11.1 2.3 12 6.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) DUF883 PF05957.8 gi|313124980|ref|YP_004035244.1| - 0.32 11.4 7.8 3.7 8.0 0.4 2.1 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) T2SF PF00482.18 gi|313124980|ref|YP_004035244.1| - 0.46 10.4 3.4 9.5 6.1 0.1 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Nucleoporin_C PF03177.9 gi|313124980|ref|YP_004035244.1| - 0.46 8.9 2.6 0.47 8.9 1.8 1.1 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal IncA PF04156.9 gi|313124980|ref|YP_004035244.1| - 0.77 9.3 3.9 1.7 8.2 2.7 1.5 1 1 0 1 1 1 0 IncA protein Sigma70_ner PF04546.8 gi|313124980|ref|YP_004035244.1| - 1.2 8.6 5.2 1.4 8.4 3.6 1.0 1 0 0 1 1 1 0 Sigma-70, non-essential region FUSC PF04632.7 gi|313124980|ref|YP_004035244.1| - 1.9 6.8 4.3 2 6.7 3.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family HEAT_2 PF13646.1 gi|313124981|ref|YP_004035245.1| - 0.0078 16.4 1.5 0.12 12.7 0.0 2.7 2 1 1 3 3 3 1 HEAT repeats DinI PF06183.8 gi|313124981|ref|YP_004035245.1| - 0.068 13.1 0.2 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 DinI-like family DUF4611 PF15387.1 gi|313124981|ref|YP_004035245.1| - 0.096 12.8 0.1 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) DUF95 PF01944.12 gi|313124982|ref|YP_004035246.1| - 1.4e-25 89.8 7.9 1.4e-25 89.8 5.5 3.0 2 1 0 2 2 2 1 Integral membrane protein DUF95 Rhodanese PF00581.15 gi|313124983|ref|YP_004035247.1| - 1.4e-38 131.6 0.1 3e-20 72.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|313124984|ref|YP_004035248.1| - 2.8e-39 133.9 0.0 3.1e-20 72.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain UPF0118 PF01594.11 gi|313124985|ref|YP_004035249.1| - 8.5e-27 93.9 35.8 2.6e-26 92.3 24.8 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF20 SBP_bac_6 PF13343.1 gi|313124986|ref|YP_004035250.1| - 1.6e-20 73.5 0.0 2.2e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|313124986|ref|YP_004035250.1| - 6.5e-20 72.0 0.1 8.5e-20 71.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313124986|ref|YP_004035250.1| - 1.4e-11 44.7 0.1 1.8e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313124986|ref|YP_004035250.1| - 1.8e-07 31.0 0.0 3.8e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|313124986|ref|YP_004035250.1| - 0.12 12.4 5.8 0.29 11.2 4.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|313124987|ref|YP_004035251.1| - 1.7e-28 99.4 47.3 1.8e-15 56.9 14.9 3.6 2 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.7 gi|313124988|ref|YP_004035252.1| - 1.1e-25 89.9 0.0 1.9e-25 89.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313124988|ref|YP_004035252.1| - 3.1e-18 65.8 0.0 3.7e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313124988|ref|YP_004035252.1| - 9.4e-15 54.8 0.0 1.6e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313124988|ref|YP_004035252.1| - 3.1e-13 50.2 0.0 5.8e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313124988|ref|YP_004035252.1| - 1.4e-12 47.6 0.1 1.8e-12 47.2 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313124988|ref|YP_004035252.1| - 6.7e-12 45.7 0.0 1.1e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313124988|ref|YP_004035252.1| - 1.1e-11 44.3 0.0 1.4e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|313124988|ref|YP_004035252.1| - 8.6e-09 35.4 0.1 2.2e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|313124988|ref|YP_004035252.1| - 1.2e-06 27.4 0.0 1.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|313124988|ref|YP_004035252.1| - 8.5e-05 21.9 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|313124988|ref|YP_004035252.1| - 0.00051 19.7 0.0 0.00079 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|313124988|ref|YP_004035252.1| - 0.00061 19.3 0.0 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 DNA methylase MetW PF07021.7 gi|313124988|ref|YP_004035252.1| - 0.00083 18.7 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|313124988|ref|YP_004035252.1| - 0.00084 18.4 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|313124988|ref|YP_004035252.1| - 0.0016 18.1 0.0 0.006 16.2 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.14 gi|313124988|ref|YP_004035252.1| - 0.0017 17.9 0.0 0.003 17.1 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|313124988|ref|YP_004035252.1| - 0.0077 17.0 0.0 0.018 15.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DUF2934 PF11154.3 gi|313124988|ref|YP_004035252.1| - 0.0088 15.3 0.8 0.021 14.1 0.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2934) FtsJ PF01728.14 gi|313124988|ref|YP_004035252.1| - 0.062 13.2 0.0 0.68 9.8 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|313124988|ref|YP_004035252.1| - 0.071 12.1 0.0 0.097 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|313124988|ref|YP_004035252.1| - 0.14 11.6 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF2391 PF09622.5 gi|313124989|ref|YP_004035253.1| - 2.2e-06 27.0 0.7 3.5e-06 26.3 0.5 1.5 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF3483 PF11982.3 gi|313124989|ref|YP_004035253.1| - 0.022 14.0 2.1 0.028 13.7 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3483) Ion_trans_2 PF07885.11 gi|313124989|ref|YP_004035253.1| - 0.27 10.9 3.5 0.12 12.0 0.7 1.9 2 1 0 2 2 2 0 Ion channel KaiC PF06745.8 gi|313124990|ref|YP_004035254.1| - 0.0013 17.9 0.0 0.0016 17.5 0.0 1.1 1 0 0 1 1 1 1 KaiC MatE PF01554.13 gi|313124993|ref|YP_004035257.1| - 3.6e-57 192.5 24.4 4.4e-29 101.1 3.8 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|313124993|ref|YP_004035257.1| - 2.3e-10 40.4 11.9 2.3e-10 40.4 8.2 4.6 3 2 1 4 4 4 3 Polysaccharide biosynthesis C-terminal domain DUF2072 PF09845.4 gi|313124994|ref|YP_004035258.1| - 6.3e-25 87.6 12.6 1e-12 48.1 3.0 3.3 2 1 1 3 3 3 2 Zn-ribbon containing protein (DUF2072) Zn-ribbon_8 PF09723.5 gi|313124994|ref|YP_004035258.1| - 0.055 13.4 1.1 0.15 12.0 0.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|313124994|ref|YP_004035258.1| - 0.12 11.6 4.4 3 7.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|313124994|ref|YP_004035258.1| - 0.14 11.9 0.8 0.23 11.2 0.5 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.1 gi|313124994|ref|YP_004035258.1| - 0.15 11.6 5.1 0.26 10.8 3.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.6 gi|313124994|ref|YP_004035258.1| - 0.18 11.5 4.2 0.086 12.6 0.5 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1451) zf-C2H2_6 PF13912.1 gi|313124994|ref|YP_004035258.1| - 0.33 10.9 1.1 0.58 10.1 0.1 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2073 PF09846.4 gi|313124995|ref|YP_004035259.1| - 7.9e-48 160.4 0.4 9.9e-48 160.1 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) Gly_kinase PF02595.10 gi|313124995|ref|YP_004035259.1| - 0.035 12.8 0.0 0.047 12.4 0.0 1.1 1 0 0 1 1 1 0 Glycerate kinase family MMR_HSR1 PF01926.18 gi|313124996|ref|YP_004035260.1| - 5.5e-15 55.3 0.0 7.7e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|313124996|ref|YP_004035260.1| - 3.8e-12 46.0 0.1 2.3e-05 23.9 0.0 2.8 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|313124996|ref|YP_004035260.1| - 3.4e-07 29.6 0.0 0.00035 19.8 0.0 2.7 2 1 0 2 2 2 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|313124996|ref|YP_004035260.1| - 9.5e-06 26.4 0.2 1.6e-05 25.6 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313124996|ref|YP_004035260.1| - 1.7e-05 25.1 0.0 4.6e-05 23.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain FeoB_N PF02421.13 gi|313124996|ref|YP_004035260.1| - 2.5e-05 23.5 0.4 0.00036 19.8 0.3 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|313124996|ref|YP_004035260.1| - 7.4e-05 23.2 0.0 0.00019 21.8 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|313124996|ref|YP_004035260.1| - 0.00011 21.4 0.0 0.056 12.6 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|313124996|ref|YP_004035260.1| - 0.00025 20.1 0.0 0.0008 18.4 0.0 1.6 1 1 0 2 2 2 1 Septin AAA_16 PF13191.1 gi|313124996|ref|YP_004035260.1| - 0.0015 18.5 0.0 0.0026 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|313124996|ref|YP_004035260.1| - 0.0021 18.0 0.2 0.073 13.0 0.0 2.3 1 1 1 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|313124996|ref|YP_004035260.1| - 0.0022 17.8 0.0 0.18 11.5 0.0 2.6 1 1 0 1 1 1 1 Dynamin family NB-ARC PF00931.17 gi|313124996|ref|YP_004035260.1| - 0.0024 16.7 0.0 0.01 14.6 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain AAA_22 PF13401.1 gi|313124996|ref|YP_004035260.1| - 0.0039 17.3 0.0 0.007 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313124996|ref|YP_004035260.1| - 0.005 17.0 0.0 0.02 15.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|313124996|ref|YP_004035260.1| - 0.0052 16.5 0.1 0.035 13.8 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|313124996|ref|YP_004035260.1| - 0.008 16.3 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 RNA helicase ArgK PF03308.11 gi|313124996|ref|YP_004035260.1| - 0.0094 14.7 0.1 0.48 9.1 0.0 2.8 3 1 0 3 3 3 1 ArgK protein cobW PF02492.14 gi|313124996|ref|YP_004035260.1| - 0.016 14.6 0.0 3.6 7.0 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.20 gi|313124996|ref|YP_004035260.1| - 0.017 14.6 0.0 0.023 14.2 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.7 gi|313124996|ref|YP_004035260.1| - 0.018 14.1 0.0 0.048 12.7 0.0 1.8 1 1 1 2 2 2 0 Zeta toxin MMR_HSR1_C PF08438.5 gi|313124996|ref|YP_004035260.1| - 0.027 14.6 0.1 0.075 13.2 0.0 1.7 2 0 0 2 2 1 0 GTPase of unknown function C-terminal NACHT PF05729.7 gi|313124996|ref|YP_004035260.1| - 0.03 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|313124996|ref|YP_004035260.1| - 0.039 13.6 0.0 0.065 12.9 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|313124996|ref|YP_004035260.1| - 0.039 14.2 0.0 0.051 13.8 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|313124996|ref|YP_004035260.1| - 0.061 13.2 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|313124996|ref|YP_004035260.1| - 0.076 12.7 0.1 0.16 11.6 0.1 1.9 1 1 0 1 1 1 0 NTPase AAA_25 PF13481.1 gi|313124996|ref|YP_004035260.1| - 0.078 12.3 0.0 0.17 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|313124996|ref|YP_004035260.1| - 0.082 12.6 0.0 0.36 10.5 0.0 2.0 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|313124996|ref|YP_004035260.1| - 0.095 11.7 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Parvo_NS1 PF01057.12 gi|313124996|ref|YP_004035260.1| - 0.13 11.0 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Cdc6_C PF09079.6 gi|313124997|ref|YP_004035261.1| - 8.1e-28 95.9 0.1 3.1e-27 94.1 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|313124997|ref|YP_004035261.1| - 2.6e-11 43.8 0.3 1.1e-09 38.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313124997|ref|YP_004035261.1| - 2e-09 37.6 0.1 2.2e-08 34.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313124997|ref|YP_004035261.1| - 4.3e-08 33.4 0.3 1.6e-06 28.3 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|313124997|ref|YP_004035261.1| - 0.00024 20.9 0.1 0.0005 19.8 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|313124997|ref|YP_004035261.1| - 0.00058 18.8 0.0 0.00099 18.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein KAP_NTPase PF07693.9 gi|313124997|ref|YP_004035261.1| - 0.00079 18.5 0.0 0.0016 17.4 0.0 1.5 1 1 0 1 1 1 1 KAP family P-loop domain Sigma54_activat PF00158.21 gi|313124997|ref|YP_004035261.1| - 0.0026 17.2 0.0 0.0061 16.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|313124997|ref|YP_004035261.1| - 0.0029 16.7 0.0 0.0068 15.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|313124997|ref|YP_004035261.1| - 0.003 16.5 0.0 0.0061 15.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|313124997|ref|YP_004035261.1| - 0.0036 16.1 0.0 0.0061 15.4 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|313124997|ref|YP_004035261.1| - 0.0038 18.0 0.0 0.011 16.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|313124997|ref|YP_004035261.1| - 0.0074 16.2 0.0 0.19 11.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|313124997|ref|YP_004035261.1| - 0.013 14.9 0.0 0.077 12.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|313124997|ref|YP_004035261.1| - 0.025 14.9 0.0 0.069 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|313124997|ref|YP_004035261.1| - 0.025 14.8 0.0 0.061 13.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DEAD PF00270.24 gi|313124997|ref|YP_004035261.1| - 0.029 13.8 3.0 0.15 11.5 0.6 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|313124997|ref|YP_004035261.1| - 0.034 13.5 0.7 7.1 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|313124997|ref|YP_004035261.1| - 0.046 13.1 1.2 0.32 10.4 0.8 2.1 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_13 PF13166.1 gi|313124997|ref|YP_004035261.1| - 0.049 12.0 0.0 0.07 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|313124997|ref|YP_004035261.1| - 0.055 13.0 0.1 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313124997|ref|YP_004035261.1| - 0.14 12.2 0.0 0.36 11.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|313124997|ref|YP_004035261.1| - 0.15 11.7 0.1 1.1 8.9 0.1 2.2 1 1 0 1 1 1 0 NACHT domain Peptidase_S24 PF00717.18 gi|313124998|ref|YP_004035262.1| - 0.0048 16.5 0.1 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like PepSY_TM_1 PF13172.1 gi|313124998|ref|YP_004035262.1| - 0.21 11.3 3.1 0.39 10.5 2.2 1.5 1 0 0 1 1 1 0 PepSY-associated TM helix DNA_pol_E_B PF04042.11 gi|313124999|ref|YP_004035263.1| - 2e-15 56.6 0.0 3e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|313124999|ref|YP_004035263.1| - 6.9e-14 51.9 0.4 1.5e-13 50.9 0.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313124999|ref|YP_004035263.1| - 1.7e-08 34.0 2.0 3.9e-08 32.9 1.4 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase AA_kinase PF00696.23 gi|313125001|ref|YP_004035265.1| - 1.5e-47 162.2 3.8 1.5e-47 162.2 2.6 2.0 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|313125001|ref|YP_004035265.1| - 1.8e-17 62.5 0.2 3.1e-08 33.0 0.1 2.8 3 0 0 3 3 3 2 ACT domain ACT PF01842.20 gi|313125001|ref|YP_004035265.1| - 7.8e-14 50.7 7.0 2.4e-06 26.9 0.0 3.3 4 0 0 4 4 4 2 ACT domain ACT_4 PF13291.1 gi|313125001|ref|YP_004035265.1| - 1.3e-06 28.6 0.1 0.082 13.2 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|313125001|ref|YP_004035265.1| - 0.00093 18.8 0.5 2.4 7.9 0.0 2.9 2 0 0 2 2 2 2 ACT domain 4HBT PF03061.17 gi|313125002|ref|YP_004035266.1| - 3.8e-17 62.1 0.3 5.6e-17 61.6 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|313125002|ref|YP_004035266.1| - 0.0013 19.1 0.0 0.0015 18.9 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily tRNA_anti-codon PF01336.20 gi|313125002|ref|YP_004035266.1| - 0.015 15.1 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain MaoC_dehydratas PF01575.14 gi|313125002|ref|YP_004035266.1| - 0.043 13.1 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 MaoC like domain Baseplate_J PF04865.9 gi|313125002|ref|YP_004035266.1| - 0.061 12.6 0.0 0.082 12.2 0.0 1.1 1 0 0 1 1 1 0 Baseplate J-like protein Beta_elim_lyase PF01212.16 gi|313125003|ref|YP_004035267.1| - 5.9e-70 235.6 0.0 8.1e-70 235.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DUF2891 PF11199.3 gi|313125004|ref|YP_004035268.1| - 1.3e-112 375.6 4.8 1.5e-112 375.4 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2891) Metallophos_2 PF12850.2 gi|313125005|ref|YP_004035269.1| - 5.4e-32 110.7 0.3 6.5e-32 110.5 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313125005|ref|YP_004035269.1| - 3.1e-12 46.3 0.1 6.1e-12 45.3 0.1 1.4 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase IMP_cyclohyd PF07826.6 gi|313125006|ref|YP_004035270.1| - 8.6e-63 211.2 0.2 1e-62 211.0 0.2 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.5 gi|313125007|ref|YP_004035271.1| - 2e-19 69.8 0.0 2.4e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MDMPI_C PF07398.6 gi|313125007|ref|YP_004035271.1| - 0.88 10.1 9.2 0.16 12.5 1.5 2.3 1 1 1 2 2 2 0 MDMPI C-terminal domain DEAD PF00270.24 gi|313125008|ref|YP_004035272.1| - 2.2e-24 85.8 0.0 4.9e-24 84.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|313125008|ref|YP_004035272.1| - 9e-08 32.1 5.3 9.6e-08 32.0 0.5 3.5 4 0 0 4 4 4 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|313125008|ref|YP_004035272.1| - 4.8e-05 23.1 0.0 0.0001 22.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|313125008|ref|YP_004035272.1| - 8e-05 22.1 0.0 0.00022 20.7 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|313125008|ref|YP_004035272.1| - 0.00013 21.8 0.0 0.00044 20.1 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Fer4_15 PF13459.1 gi|313125009|ref|YP_004035273.1| - 6e-16 58.7 2.4 7.2e-16 58.5 1.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|313125009|ref|YP_004035273.1| - 0.00061 20.1 2.7 0.0026 18.1 1.9 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|313125009|ref|YP_004035273.1| - 0.015 15.0 0.0 0.077 12.8 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313125009|ref|YP_004035273.1| - 0.02 14.4 1.8 0.38 10.4 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|313125009|ref|YP_004035273.1| - 0.1 12.9 0.3 17 5.8 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313125009|ref|YP_004035273.1| - 0.12 12.2 3.0 5.6 7.0 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain bPH_6 PF10756.4 gi|313125010|ref|YP_004035274.1| - 0.044 13.6 0.1 0.075 12.9 0.1 1.4 1 1 0 1 1 1 0 Bacterial PH domain ERCC4 PF02732.10 gi|313125011|ref|YP_004035275.1| - 3.1e-25 88.6 0.1 1e-24 86.9 0.0 1.9 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|313125011|ref|YP_004035275.1| - 3.3e-19 68.5 0.0 7.8e-19 67.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|313125011|ref|YP_004035275.1| - 3.2e-17 62.5 0.0 1e-16 60.8 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|313125011|ref|YP_004035275.1| - 3.3e-12 46.6 0.0 8.9e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|313125011|ref|YP_004035275.1| - 9.6e-11 41.4 0.4 6.4e-10 38.7 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|313125011|ref|YP_004035275.1| - 1.8e-09 37.6 1.8 5.4e-09 36.0 0.1 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.18 gi|313125011|ref|YP_004035275.1| - 1.1e-07 31.1 0.4 4.3e-05 22.9 0.1 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|313125011|ref|YP_004035275.1| - 0.0096 16.1 0.0 0.032 14.4 0.0 1.9 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.1 gi|313125011|ref|YP_004035275.1| - 0.014 15.3 0.0 0.042 13.8 0.0 1.8 1 0 0 1 1 1 0 Helicase C-terminal domain Usp PF00582.21 gi|313125013|ref|YP_004035277.1| - 1.8e-22 80.0 1.6 2.1e-22 79.7 1.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Auto_anti-p27 PF06677.7 gi|313125014|ref|YP_004035278.1| - 2.1e-18 65.8 0.5 2.9e-18 65.3 0.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|313125014|ref|YP_004035278.1| - 0.0023 17.8 1.4 0.053 13.4 0.1 2.5 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|313125014|ref|YP_004035278.1| - 0.0033 17.2 3.2 0.0071 16.1 2.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313125014|ref|YP_004035278.1| - 0.0064 15.6 3.2 0.01 15.0 2.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-dskA_traR PF01258.12 gi|313125014|ref|YP_004035278.1| - 0.02 14.6 1.2 0.05 13.3 0.8 1.7 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger HypA PF01155.14 gi|313125014|ref|YP_004035278.1| - 0.049 13.3 0.9 0.091 12.4 0.6 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3279 PF11682.3 gi|313125014|ref|YP_004035278.1| - 0.083 12.4 2.6 0.062 12.8 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3279) Zn_Tnp_IS91 PF14319.1 gi|313125014|ref|YP_004035278.1| - 0.13 11.8 2.4 0.26 10.7 1.6 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain A2L_zn_ribbon PF08792.5 gi|313125014|ref|YP_004035278.1| - 0.17 11.4 1.5 0.32 10.5 1.0 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|313125014|ref|YP_004035278.1| - 0.42 10.3 2.2 2.5 7.8 0.2 2.6 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|313125014|ref|YP_004035278.1| - 7.2 6.2 7.3 4.5 6.8 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ldh_1_N PF00056.18 gi|313125015|ref|YP_004035279.1| - 6.7e-39 132.9 0.2 9.7e-39 132.4 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|313125015|ref|YP_004035279.1| - 2.5e-33 115.2 0.0 3.9e-33 114.6 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Abi PF02517.11 gi|313125016|ref|YP_004035280.1| - 4.8e-13 49.0 8.4 4.8e-13 49.0 5.8 3.0 3 1 0 3 3 3 1 CAAX protease self-immunity DUF3525 PF12039.3 gi|313125016|ref|YP_004035280.1| - 0.056 11.9 0.3 0.091 11.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) TAT_signal PF10518.4 gi|313125017|ref|YP_004035281.1| - 0.0019 18.0 6.1 0.0019 18.0 4.2 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence NPCBM_assoc PF10633.4 gi|313125019|ref|YP_004035283.1| - 7.1e-08 32.3 10.8 0.0015 18.5 0.0 4.5 5 1 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.3 gi|313125019|ref|YP_004035283.1| - 1.6e-05 24.9 0.2 0.24 11.5 0.1 3.6 3 1 1 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF11 PF01345.13 gi|313125019|ref|YP_004035283.1| - 6.1e-05 23.0 6.9 0.0013 18.7 0.4 4.0 4 1 0 4 4 4 1 Domain of unknown function DUF11 DUF4625 PF15418.1 gi|313125019|ref|YP_004035283.1| - 0.0016 18.5 0.1 2.4 8.2 0.0 2.9 2 2 1 3 3 3 2 Domain of unknown function (DUF4625) A2M PF00207.17 gi|313125019|ref|YP_004035283.1| - 0.0036 16.8 0.1 23 4.6 0.0 4.0 4 0 0 4 4 4 0 Alpha-2-macroglobulin family DUF1034 PF06280.7 gi|313125019|ref|YP_004035283.1| - 0.0078 16.6 4.3 1.4 9.3 0.0 3.8 2 2 0 2 2 2 1 Fn3-like domain (DUF1034) E1_DerP2_DerF2 PF02221.10 gi|313125019|ref|YP_004035283.1| - 0.0081 16.4 0.2 5.8 7.1 0.0 2.8 2 0 0 2 2 2 2 ML domain DUF824 PF05688.6 gi|313125019|ref|YP_004035283.1| - 0.015 14.8 0.3 1.8 8.2 0.0 3.1 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) UvrC_HhH_N PF08459.6 gi|313125020|ref|YP_004035284.1| - 2.2e-41 140.9 0.0 3.8e-41 140.1 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|313125020|ref|YP_004035284.1| - 4.8e-11 41.7 0.2 2.4e-06 26.9 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|313125020|ref|YP_004035284.1| - 9.4e-11 41.7 0.1 3.1e-10 40.0 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|313125020|ref|YP_004035284.1| - 4.3e-10 39.3 0.1 1.6e-09 37.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif UVR PF02151.14 gi|313125020|ref|YP_004035284.1| - 5.6e-08 32.0 2.0 1.7e-07 30.5 1.4 1.9 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|313125020|ref|YP_004035284.1| - 7.2e-06 26.2 0.0 1.4e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|313125020|ref|YP_004035284.1| - 9e-06 25.8 0.0 0.0034 17.5 0.0 2.5 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|313125020|ref|YP_004035284.1| - 3.6e-05 23.5 0.0 0.077 13.0 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif HHH_8 PF14716.1 gi|313125020|ref|YP_004035284.1| - 0.0071 16.4 0.2 3.4 7.9 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain HTH_20 PF12840.2 gi|313125021|ref|YP_004035285.1| - 0.0047 16.7 3.0 1 9.2 0.9 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain Y1_Tnp PF01797.11 gi|313125023|ref|YP_004035287.1| - 2e-37 127.7 0.0 2.2e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|313125024|ref|YP_004035288.1| - 7.2e-28 97.5 0.2 2e-27 96.0 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313125024|ref|YP_004035288.1| - 2.6e-21 75.0 2.6 3.2e-21 74.7 0.1 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|313125024|ref|YP_004035288.1| - 1.1e-07 31.0 1.2 2.1e-07 30.1 0.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|313125024|ref|YP_004035288.1| - 0.055 13.3 1.5 0.13 12.0 1.0 1.7 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313125024|ref|YP_004035288.1| - 0.23 10.7 2.6 1.8 7.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313125024|ref|YP_004035288.1| - 5.9 6.9 5.6 11 6.0 0.1 2.7 3 0 0 3 3 3 0 Zinc ribbon domain ABC_tran PF00005.22 gi|313125025|ref|YP_004035289.1| - 4.6e-29 101.4 0.0 7.2e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125025|ref|YP_004035289.1| - 9.6e-13 48.7 0.0 1.8e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|313125025|ref|YP_004035289.1| - 0.00079 19.8 0.0 0.0016 18.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.1 gi|313125025|ref|YP_004035289.1| - 0.002 17.7 1.2 0.042 13.4 0.5 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313125025|ref|YP_004035289.1| - 0.0085 15.6 0.0 0.021 14.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|313125025|ref|YP_004035289.1| - 0.015 15.2 0.0 0.059 13.3 0.0 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|313125025|ref|YP_004035289.1| - 0.019 14.4 1.4 2.7 7.3 0.1 2.8 1 1 1 2 2 2 0 AAA domain DUF4480 PF13715.1 gi|313125025|ref|YP_004035289.1| - 0.019 14.9 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) AAA_16 PF13191.1 gi|313125025|ref|YP_004035289.1| - 0.021 14.8 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313125025|ref|YP_004035289.1| - 0.024 13.8 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|313125025|ref|YP_004035289.1| - 0.027 14.8 0.1 0.045 14.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313125025|ref|YP_004035289.1| - 0.065 12.6 0.0 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|313125026|ref|YP_004035290.1| - 9.6e-58 195.2 13.4 1.1e-57 195.0 9.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313125026|ref|YP_004035290.1| - 3.8e-13 49.1 12.1 3.8e-13 49.1 8.4 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|313125026|ref|YP_004035290.1| - 2.4e-10 39.9 11.3 2.4e-10 39.9 7.8 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|313125026|ref|YP_004035290.1| - 4.4e-09 35.8 16.6 4.4e-09 35.8 11.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313125026|ref|YP_004035290.1| - 9.9e-06 24.9 6.2 9.9e-06 24.9 4.3 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein YqhR PF11085.3 gi|313125026|ref|YP_004035290.1| - 0.058 12.9 3.4 0.067 12.7 1.3 2.0 2 0 0 2 2 2 0 Conserved membrane protein YqhR DNA_ligase_aden PF01653.13 gi|313125027|ref|YP_004035291.1| - 1.5e-105 352.6 0.0 2.2e-105 352.0 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|313125027|ref|YP_004035291.1| - 8.4e-29 99.0 2.7 2e-28 97.8 1.8 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|313125027|ref|YP_004035291.1| - 1.8e-24 85.3 0.1 4.1e-23 81.0 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|313125027|ref|YP_004035291.1| - 8e-19 67.5 3.3 9.6e-09 35.2 0.0 3.5 3 0 0 3 3 2 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|313125027|ref|YP_004035291.1| - 5.8e-11 42.3 0.0 1.1e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|313125027|ref|YP_004035291.1| - 4.8e-10 38.5 1.0 2e-06 27.2 0.0 3.9 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|313125027|ref|YP_004035291.1| - 3.8e-05 23.3 5.5 0.00011 21.7 3.8 1.9 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_8 PF14716.1 gi|313125027|ref|YP_004035291.1| - 0.018 15.2 0.1 0.6 10.3 0.0 3.4 2 1 1 3 3 3 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|313125027|ref|YP_004035291.1| - 0.051 13.8 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Aldolase_2 PF10120.4 gi|313125027|ref|YP_004035291.1| - 0.064 12.6 0.2 5.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Putative aldolase HHH_3 PF12836.2 gi|313125027|ref|YP_004035291.1| - 0.087 12.7 0.0 1.2 9.1 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif HEAT_2 PF13646.1 gi|313125028|ref|YP_004035292.1| - 2.9e-63 210.1 54.2 1.4e-16 60.5 2.5 6.8 1 1 5 7 7 7 7 HEAT repeats HEAT PF02985.17 gi|313125028|ref|YP_004035292.1| - 4.7e-20 69.8 31.7 0.0006 19.6 0.1 11.9 12 0 0 12 12 12 6 HEAT repeat HEAT_PBS PF03130.11 gi|313125028|ref|YP_004035292.1| - 4e-17 60.8 33.1 0.00028 21.0 0.1 9.8 10 0 0 10 10 10 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|313125028|ref|YP_004035292.1| - 1.3e-15 57.3 50.2 0.0073 16.7 0.6 10.7 8 3 3 11 11 11 6 HEAT-like repeat Arm PF00514.18 gi|313125028|ref|YP_004035292.1| - 9.5e-08 31.5 6.4 0.017 14.8 0.1 7.2 8 1 1 9 9 9 1 Armadillo/beta-catenin-like repeat ERAP1_C PF11838.3 gi|313125028|ref|YP_004035292.1| - 8e-06 25.3 0.5 2 7.5 0.1 4.4 1 1 3 4 4 4 3 ERAP1-like C-terminal domain Cnd1 PF12717.2 gi|313125028|ref|YP_004035292.1| - 0.011 15.6 0.1 57 3.4 0.0 4.6 4 1 0 5 5 5 0 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|313125028|ref|YP_004035292.1| - 0.015 13.6 0.3 5.3 5.2 0.0 3.2 3 1 0 3 3 3 0 Adaptin N terminal region Cys_Met_Meta_PP PF01053.15 gi|313125029|ref|YP_004035293.1| - 1.5e-130 434.9 0.0 1.8e-130 434.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|313125029|ref|YP_004035293.1| - 1.6e-05 23.8 0.1 2.6e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Abhydrolase_1 PF00561.15 gi|313125030|ref|YP_004035294.1| - 2e-20 73.3 0.1 2.6e-20 72.9 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|313125030|ref|YP_004035294.1| - 1.4e-17 64.3 4.5 2.1e-17 63.7 3.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|313125030|ref|YP_004035294.1| - 0.0075 16.1 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.15 gi|313125030|ref|YP_004035294.1| - 0.022 14.2 0.0 0.087 12.2 0.0 1.8 2 0 0 2 2 2 0 Putative esterase Cys_Met_Meta_PP PF01053.15 gi|313125032|ref|YP_004035296.1| - 1.1e-136 455.1 0.0 1.3e-136 454.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|313125032|ref|YP_004035296.1| - 2.1e-08 33.5 0.0 3.2e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|313125032|ref|YP_004035296.1| - 6.3e-07 28.7 0.3 1.5e-06 27.5 0.2 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|313125032|ref|YP_004035296.1| - 0.0011 17.8 0.4 0.003 16.3 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|313125032|ref|YP_004035296.1| - 0.0098 15.0 0.2 0.024 13.7 0.0 1.7 2 1 0 2 2 2 1 Beta-eliminating lyase PHO4 PF01384.15 gi|313125033|ref|YP_004035297.1| - 5.5e-58 196.1 27.9 5.5e-58 196.1 19.4 1.4 1 1 0 2 2 2 1 Phosphate transporter family PHO4 PF01384.15 gi|313125034|ref|YP_004035298.1| - 4.5e-70 235.8 23.0 6.2e-70 235.4 15.9 1.2 1 0 0 1 1 1 1 Phosphate transporter family Fer2 PF00111.22 gi|313125035|ref|YP_004035299.1| - 7.2e-15 54.5 0.3 1.1e-14 53.9 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|313125035|ref|YP_004035299.1| - 0.038 13.8 0.1 0.075 12.8 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|313125035|ref|YP_004035299.1| - 0.12 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Arc_PepC_II PF06847.6 gi|313125036|ref|YP_004035300.1| - 1.9e-17 63.4 0.0 7.5e-16 58.3 0.0 2.2 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|313125036|ref|YP_004035300.1| - 3.4e-09 36.8 8.7 3.4e-09 36.8 6.0 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family DUF161 PF02588.10 gi|313125037|ref|YP_004035301.1| - 0.11 12.8 1.4 5.2 7.4 0.6 2.5 2 0 0 2 2 2 0 Uncharacterized BCR, YitT family COG1284 Oxidored_q2 PF00420.19 gi|313125037|ref|YP_004035301.1| - 0.14 11.7 3.5 0.35 10.4 2.4 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Phage_Coat_Gp8 PF05371.7 gi|313125037|ref|YP_004035301.1| - 0.19 11.2 1.0 0.43 10.1 0.7 1.6 1 0 0 1 1 1 0 Phage major coat protein, Gp8 DUF4229 PF14012.1 gi|313125037|ref|YP_004035301.1| - 4.2 7.3 13.7 0.26 11.1 5.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) PRA-CH PF01502.13 gi|313125038|ref|YP_004035302.1| - 3.1e-37 126.0 0.2 3.1e-37 126.0 0.1 1.4 2 0 0 2 2 2 1 Phosphoribosyl-AMP cyclohydrolase RPA_interact_M PF14767.1 gi|313125039|ref|YP_004035303.1| - 0.077 13.7 5.5 2.1 9.1 0.1 3.4 3 1 0 3 3 3 0 Replication protein A interacting middle PMEI PF04043.10 gi|313125039|ref|YP_004035303.1| - 0.41 10.5 4.7 0.5 10.2 0.2 2.6 2 1 1 3 3 3 0 Plant invertase/pectin methylesterase inhibitor DUF3185 PF11381.3 gi|313125040|ref|YP_004035304.1| - 0.47 10.2 4.1 1.3 8.8 0.3 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF1469 PF07332.6 gi|313125040|ref|YP_004035304.1| - 1.5 8.5 4.4 3.3 7.4 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Acetyltransf_1 PF00583.19 gi|313125041|ref|YP_004035305.1| - 1.9e-13 50.2 0.0 3.2e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313125041|ref|YP_004035305.1| - 8.9e-10 38.7 0.0 1.2e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125041|ref|YP_004035305.1| - 1.2e-06 28.6 0.0 1.7e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125041|ref|YP_004035305.1| - 2.5e-05 23.9 0.0 3.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|313125041|ref|YP_004035305.1| - 3.8e-05 23.6 0.0 4.7e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313125041|ref|YP_004035305.1| - 0.00045 20.1 0.0 0.0006 19.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313125041|ref|YP_004035305.1| - 0.018 15.1 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PGM_PMM_I PF02878.11 gi|313125042|ref|YP_004035306.1| - 9.2e-34 115.8 0.0 1.6e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|313125042|ref|YP_004035306.1| - 2.2e-26 92.2 0.3 4.5e-26 91.2 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|313125042|ref|YP_004035306.1| - 4.9e-16 58.4 0.2 2.6e-15 56.1 0.1 2.3 2 1 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|313125042|ref|YP_004035306.1| - 6.2e-12 45.5 0.0 1.4e-11 44.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III P3A PF08727.6 gi|313125042|ref|YP_004035306.1| - 0.054 12.8 0.5 8 5.8 0.0 2.5 2 0 0 2 2 2 0 Poliovirus 3A protein like His_biosynth PF00977.16 gi|313125043|ref|YP_004035307.1| - 2e-75 252.9 5.8 2.2e-75 252.8 4.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|313125043|ref|YP_004035307.1| - 3.8e-12 45.6 0.6 2.7e-06 26.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|313125043|ref|YP_004035307.1| - 1.6e-10 40.4 2.2 6.6e-06 25.2 0.4 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|313125043|ref|YP_004035307.1| - 9e-09 34.7 9.6 0.00013 21.1 0.5 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|313125043|ref|YP_004035307.1| - 4.1e-08 32.7 14.5 1.6e-06 27.5 3.6 2.1 1 1 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|313125043|ref|YP_004035307.1| - 8.5e-08 31.7 5.2 0.0019 17.4 0.5 2.4 2 1 0 2 2 2 2 PcrB family IGPS PF00218.16 gi|313125043|ref|YP_004035307.1| - 5.4e-06 25.6 1.5 0.0013 17.8 0.1 2.8 2 2 1 3 3 3 2 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|313125043|ref|YP_004035307.1| - 1.4e-05 24.3 4.5 0.00063 18.8 0.7 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI Trp_syntA PF00290.15 gi|313125043|ref|YP_004035307.1| - 0.00031 19.3 2.8 0.068 11.6 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|313125043|ref|YP_004035307.1| - 0.0029 16.5 11.2 0.15 10.8 1.5 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NanE PF04131.9 gi|313125043|ref|YP_004035307.1| - 0.0049 15.8 1.6 0.63 8.9 0.2 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.7 gi|313125043|ref|YP_004035307.1| - 0.051 12.5 0.4 0.051 12.5 0.3 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.7 gi|313125043|ref|YP_004035307.1| - 0.072 12.0 0.1 0.18 10.7 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|313125043|ref|YP_004035307.1| - 0.086 11.7 5.3 0.24 10.2 0.9 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PA PF02225.17 gi|313125043|ref|YP_004035307.1| - 0.12 12.1 2.1 4.2 7.1 0.6 2.3 1 1 1 2 2 2 0 PA domain IF-2 PF11987.3 gi|313125043|ref|YP_004035307.1| - 0.12 12.2 0.4 0.22 11.4 0.3 1.4 1 0 0 1 1 1 0 Translation-initiation factor 2 BtpA PF03437.10 gi|313125043|ref|YP_004035307.1| - 0.39 9.9 7.1 4.3 6.5 0.1 2.6 1 1 2 3 3 3 0 BtpA family Ribul_P_3_epim PF00834.14 gi|313125043|ref|YP_004035307.1| - 0.42 9.6 5.8 0.34 10.0 0.4 2.5 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family IGPD PF00475.13 gi|313125044|ref|YP_004035308.1| - 2e-62 209.3 1.7 3.1e-62 208.7 1.2 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Lar_restr_allev PF14354.1 gi|313125045|ref|YP_004035309.1| - 0.32 11.3 2.0 0.39 11.0 0.0 2.3 2 1 0 2 2 2 0 Restriction alleviation protein Lar Herpes_TAF50 PF03326.8 gi|313125045|ref|YP_004035309.1| - 5.9 5.7 13.6 7.7 5.3 9.5 1.1 1 0 0 1 1 1 0 Herpesvirus transcription activation factor (transactivator) ACT_7 PF13840.1 gi|313125046|ref|YP_004035310.1| - 2.3e-05 23.8 0.0 7.1e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|313125046|ref|YP_004035310.1| - 6.1e-05 22.4 0.7 0.00025 20.4 0.1 2.4 2 1 0 2 2 2 1 ACT domain CM_2 PF01817.16 gi|313125046|ref|YP_004035310.1| - 0.038 14.0 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Chorismate mutase type II UPF0029 PF01205.14 gi|313125047|ref|YP_004035311.1| - 6.2e-33 112.7 0.0 8e-33 112.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|313125047|ref|YP_004035311.1| - 3.9e-10 39.1 0.4 8.1e-10 38.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|313125047|ref|YP_004035311.1| - 0.002 17.9 0.0 0.0052 16.6 0.0 1.7 2 0 0 2 2 2 1 Elongation factor G C-terminus DAO PF01266.19 gi|313125048|ref|YP_004035312.1| - 7.4e-68 229.0 5.8 8.4e-68 228.8 4.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|313125048|ref|YP_004035312.1| - 9.5e-08 31.2 0.6 0.0051 15.7 0.5 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|313125048|ref|YP_004035312.1| - 5e-07 29.7 0.1 7.3e-05 22.7 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|313125048|ref|YP_004035312.1| - 1.8e-06 27.2 2.7 0.00031 19.9 0.5 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|313125048|ref|YP_004035312.1| - 2.2e-06 26.8 4.4 5.9e-06 25.3 3.1 1.6 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313125048|ref|YP_004035312.1| - 5.1e-05 23.2 0.6 0.00012 22.0 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|313125048|ref|YP_004035312.1| - 0.00015 20.5 0.3 0.045 12.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|313125048|ref|YP_004035312.1| - 0.00015 20.7 0.1 0.39 9.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|313125048|ref|YP_004035312.1| - 0.00031 20.4 1.0 0.00088 18.9 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|313125048|ref|YP_004035312.1| - 0.001 18.5 0.1 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|313125048|ref|YP_004035312.1| - 0.0046 16.7 1.4 3 7.6 0.1 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|313125048|ref|YP_004035312.1| - 0.0049 16.9 0.1 0.16 12.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|313125048|ref|YP_004035312.1| - 0.0092 15.8 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 ThiF family Pyr_redox PF00070.22 gi|313125048|ref|YP_004035312.1| - 0.01 16.2 1.0 0.01 16.2 0.7 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313125048|ref|YP_004035312.1| - 0.012 14.0 0.4 0.92 7.9 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Shikimate_DH PF01488.15 gi|313125048|ref|YP_004035312.1| - 0.029 14.4 0.0 0.054 13.5 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.2 gi|313125048|ref|YP_004035312.1| - 0.038 13.0 0.9 0.051 12.6 0.2 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase Peptidase_S9 PF00326.16 gi|313125049|ref|YP_004035313.1| - 1.2e-56 191.2 1.0 1.8e-56 190.7 0.7 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|313125049|ref|YP_004035313.1| - 4.9e-14 51.6 0.1 6.2e-06 25.7 0.1 4.6 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|313125049|ref|YP_004035313.1| - 2.1e-07 30.8 0.1 4.6e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Gmad1 PF10647.4 gi|313125049|ref|YP_004035313.1| - 9.5e-07 28.4 4.6 0.27 10.6 0.2 4.1 2 2 0 3 3 3 3 Lipoprotein LpqB beta-propeller domain DPPIV_N PF00930.16 gi|313125049|ref|YP_004035313.1| - 4.1e-06 25.6 0.3 0.47 8.9 0.0 4.6 4 1 0 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.13 gi|313125049|ref|YP_004035313.1| - 3e-05 23.4 0.1 5.9e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|313125049|ref|YP_004035313.1| - 0.00013 21.9 2.8 0.00036 20.4 0.6 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|313125049|ref|YP_004035313.1| - 0.00063 18.3 0.6 0.066 11.6 0.4 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|313125049|ref|YP_004035313.1| - 0.0047 16.4 0.0 0.0088 15.5 0.0 1.4 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Neurensin PF14927.1 gi|313125050|ref|YP_004035314.1| - 0.00062 19.1 0.1 0.001 18.4 0.1 1.3 1 1 0 1 1 1 1 Neurensin DUF4386 PF14329.1 gi|313125050|ref|YP_004035314.1| - 0.006 16.0 0.7 0.015 14.7 0.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4386) MFS_1 PF07690.11 gi|313125050|ref|YP_004035314.1| - 0.076 11.7 1.2 0.63 8.6 0.2 1.9 2 0 0 2 2 2 0 Major Facilitator Superfamily SdpI PF13630.1 gi|313125050|ref|YP_004035314.1| - 0.08 12.6 0.1 0.59 9.8 0.0 1.9 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF3040 PF11239.3 gi|313125050|ref|YP_004035314.1| - 0.34 10.9 5.2 9.2 6.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF3185 PF11381.3 gi|313125050|ref|YP_004035314.1| - 0.79 9.5 4.7 54 3.6 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3185) DUF2976 PF11190.3 gi|313125050|ref|YP_004035314.1| - 0.89 9.1 5.9 0.79 9.2 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) PGPGW PF09656.5 gi|313125050|ref|YP_004035314.1| - 8.3 5.7 8.6 8.4 5.7 1.0 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF1201 PF06716.6 gi|313125051|ref|YP_004035315.1| - 0.31 10.8 2.6 17 5.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) ABC2_membrane_3 PF12698.2 gi|313125051|ref|YP_004035315.1| - 6.4 5.7 16.1 8.7 5.2 11.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Glyco_hydro_26 PF02156.10 gi|313125052|ref|YP_004035316.1| - 2.2e-07 30.6 6.6 4.3e-07 29.6 1.4 2.4 2 1 1 3 3 3 2 Glycosyl hydrolase family 26 Glyco_hydro_cc PF11790.3 gi|313125052|ref|YP_004035316.1| - 0.029 13.7 0.2 0.058 12.8 0.1 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase catalytic core Zn-ribbon_8 PF09723.5 gi|313125053|ref|YP_004035317.1| - 1e-06 28.5 2.8 0.24 11.3 0.1 3.2 3 0 0 3 3 3 2 Zinc ribbon domain zf-RING_3 PF14369.1 gi|313125053|ref|YP_004035317.1| - 0.00015 21.6 9.9 0.014 15.4 0.0 3.3 2 1 1 3 3 3 1 zinc-finger Zn_Tnp_IS1 PF03811.8 gi|313125053|ref|YP_004035317.1| - 0.0046 16.4 3.8 8.3 6.0 0.0 3.2 3 0 0 3 3 3 0 InsA N-terminal domain zinc-ribbons_6 PF07191.7 gi|313125053|ref|YP_004035317.1| - 0.0076 16.0 6.0 0.14 11.9 2.1 2.8 2 1 0 2 2 2 1 zinc-ribbons Prok-RING_1 PF14446.1 gi|313125053|ref|YP_004035317.1| - 0.023 14.3 7.3 0.092 12.4 0.2 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-C2H2 PF00096.21 gi|313125053|ref|YP_004035317.1| - 0.048 14.0 6.1 6.9 7.2 0.2 3.3 3 0 0 3 3 3 0 Zinc finger, C2H2 type Rep_fac-A_C PF08646.5 gi|313125053|ref|YP_004035317.1| - 0.066 12.9 0.2 0.066 12.9 0.1 1.5 2 0 0 2 2 2 0 Replication factor-A C terminal domain zinc_ribbon_4 PF13717.1 gi|313125053|ref|YP_004035317.1| - 0.26 11.0 3.8 17 5.1 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|313125053|ref|YP_004035317.1| - 0.28 11.5 3.7 25 5.5 0.0 3.1 3 1 0 3 3 3 0 C2H2-type zinc finger Rubredoxin PF00301.15 gi|313125053|ref|YP_004035317.1| - 0.3 10.9 6.5 6.8 6.6 0.0 3.4 3 1 0 3 3 3 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|313125053|ref|YP_004035317.1| - 0.32 11.3 8.5 1.2 9.5 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain Sgf11 PF08209.6 gi|313125053|ref|YP_004035317.1| - 0.46 9.8 6.2 16 4.8 0.2 3.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|313125053|ref|YP_004035317.1| - 0.74 9.5 6.0 1.4 8.6 1.1 2.4 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|313125053|ref|YP_004035317.1| - 0.84 9.1 6.4 20 4.8 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|313125053|ref|YP_004035317.1| - 0.86 8.8 7.1 3.2 7.0 0.1 3.1 3 0 0 3 3 3 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|313125053|ref|YP_004035317.1| - 0.89 8.9 9.9 5.5 6.4 0.0 3.3 3 1 1 4 4 4 0 TFIIB zinc-binding DZR PF12773.2 gi|313125053|ref|YP_004035317.1| - 1.2 9.0 8.1 1.1e+02 2.7 5.6 2.9 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|313125053|ref|YP_004035317.1| - 1.2 8.7 0.0 1.2 8.7 0.0 2.9 1 1 2 3 3 3 0 Ribosomal protein S27 DUF1272 PF06906.6 gi|313125053|ref|YP_004035317.1| - 1.6 8.6 12.7 2 8.3 0.1 2.8 2 2 1 3 3 3 0 Protein of unknown function (DUF1272) zf-C2H2_6 PF13912.1 gi|313125053|ref|YP_004035317.1| - 1.6 8.7 0.0 1.6 8.7 0.0 2.7 3 0 0 3 3 3 0 C2H2-type zinc finger Cys_rich_KTR PF14205.1 gi|313125053|ref|YP_004035317.1| - 2.2 7.7 6.0 2.9 7.4 2.2 2.3 2 1 0 2 2 2 0 Cysteine-rich KTR zf-IS66 PF13005.2 gi|313125053|ref|YP_004035317.1| - 2.6 8.0 12.4 2.2 8.3 0.6 3.2 2 1 2 4 4 4 0 zinc-finger binding domain of transposase IS66 Opy2 PF09463.5 gi|313125053|ref|YP_004035317.1| - 5.5 7.1 17.5 11 6.2 1.3 3.3 2 2 0 2 2 2 0 Opy2 protein zinc_ribbon_5 PF13719.1 gi|313125053|ref|YP_004035317.1| - 5.9 6.5 9.0 19 4.9 0.2 3.1 2 1 0 3 3 3 0 zinc-ribbon domain Prok-RING_4 PF14447.1 gi|313125053|ref|YP_004035317.1| - 7.2 6.2 9.8 29 4.2 2.8 2.8 2 1 0 2 2 2 0 Prokaryotic RING finger family 4 Glyco_tranf_2_3 PF13641.1 gi|313125054|ref|YP_004035318.1| - 9.5e-46 156.4 0.0 1.3e-45 156.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|313125054|ref|YP_004035318.1| - 3.9e-35 121.0 0.0 5.7e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|313125054|ref|YP_004035318.1| - 8e-32 110.5 2.0 8e-32 110.5 1.4 3.1 2 1 1 3 3 3 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|313125054|ref|YP_004035318.1| - 2.1e-17 62.9 0.0 4.4e-17 61.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|313125054|ref|YP_004035318.1| - 6.3e-16 57.8 2.2 1.2e-09 37.0 0.0 3.1 2 1 1 3 3 3 3 Chitin synthase Glyco_tranf_2_2 PF10111.4 gi|313125054|ref|YP_004035318.1| - 5.7e-10 38.7 0.0 8.5e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.9 gi|313125054|ref|YP_004035318.1| - 4.9e-07 28.4 10.3 2.4e-06 26.2 0.1 2.7 3 0 0 3 3 3 2 Cellulose synthase Glyco_tranf_2_4 PF13704.1 gi|313125054|ref|YP_004035318.1| - 0.0023 18.2 0.0 0.0047 17.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.10 gi|313125054|ref|YP_004035318.1| - 0.087 11.3 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 GNT-I family Sec62 PF03839.11 gi|313125054|ref|YP_004035318.1| - 0.66 9.3 1.6 2 7.7 1.1 1.8 1 0 0 1 1 1 0 Translocation protein Sec62 zf-RING_3 PF14369.1 gi|313125055|ref|YP_004035319.1| - 0.0046 16.9 2.4 0.0069 16.3 0.0 2.0 2 0 0 2 2 2 1 zinc-finger DZR PF12773.2 gi|313125055|ref|YP_004035319.1| - 0.0076 16.0 0.4 0.011 15.5 0.2 1.3 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|313125055|ref|YP_004035319.1| - 0.088 12.5 0.7 2.5 7.8 1.3 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 FYVE PF01363.16 gi|313125055|ref|YP_004035319.1| - 0.1 12.4 0.1 0.14 12.0 0.1 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-dskA_traR PF01258.12 gi|313125055|ref|YP_004035319.1| - 0.12 12.1 0.3 0.97 9.2 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|313125055|ref|YP_004035319.1| - 1.5 8.1 4.5 19 4.6 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain UPRTase PF14681.1 gi|313125056|ref|YP_004035320.1| - 2.9e-53 180.1 0.0 3.3e-53 179.9 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|313125056|ref|YP_004035320.1| - 2.9e-07 30.2 0.1 4.5e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Na_Ala_symp PF01235.12 gi|313125057|ref|YP_004035321.1| - 0.043 12.3 1.6 0.048 12.2 1.1 1.0 1 0 0 1 1 1 0 Sodium:alanine symporter family DUF2512 PF10710.4 gi|313125057|ref|YP_004035321.1| - 2.5 7.5 7.6 3.5 7.0 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) Cytochrom_B559a PF00284.15 gi|313125058|ref|YP_004035322.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit ArsA_ATPase PF02374.10 gi|313125059|ref|YP_004035323.1| - 4.5e-72 242.6 0.0 5.4e-72 242.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|313125059|ref|YP_004035323.1| - 1.6e-11 44.0 0.0 6.7e-11 41.9 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313125059|ref|YP_004035323.1| - 7.2e-08 32.5 0.1 7.4e-07 29.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|313125059|ref|YP_004035323.1| - 0.00011 21.8 0.2 0.00013 21.5 0.1 1.3 1 1 0 1 1 1 1 AAA-like domain KaiC PF06745.8 gi|313125059|ref|YP_004035323.1| - 0.00019 20.6 0.0 0.00026 20.1 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|313125059|ref|YP_004035323.1| - 0.00067 19.1 0.6 0.002 17.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|313125059|ref|YP_004035323.1| - 0.018 14.3 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|313125059|ref|YP_004035323.1| - 0.023 14.0 0.1 0.044 13.2 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|313125059|ref|YP_004035323.1| - 0.033 13.0 0.2 0.053 12.3 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|313125059|ref|YP_004035323.1| - 0.038 13.9 4.6 10 6.0 1.4 3.3 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|313125059|ref|YP_004035323.1| - 0.048 12.4 0.0 0.13 11.0 0.0 1.7 2 0 0 2 2 2 0 ArgK protein SRP54 PF00448.17 gi|313125059|ref|YP_004035323.1| - 0.052 12.9 0.3 0.15 11.4 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|313125059|ref|YP_004035323.1| - 0.073 13.3 1.5 2.2 8.5 1.1 2.7 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|313125059|ref|YP_004035323.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.12 gi|313125059|ref|YP_004035323.1| - 0.11 12.0 0.1 0.29 10.6 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|313125059|ref|YP_004035323.1| - 0.24 11.6 0.9 1.3 9.2 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|313125059|ref|YP_004035323.1| - 0.26 11.1 3.3 0.16 11.8 0.1 2.4 3 1 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|313125059|ref|YP_004035323.1| - 0.58 10.9 4.1 5.2 7.8 2.9 2.6 1 1 0 1 1 1 0 AAA domain Cupin_2 PF07883.6 gi|313125060|ref|YP_004035324.1| - 6e-15 54.5 0.7 8.8e-15 53.9 0.5 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|313125060|ref|YP_004035324.1| - 5.4e-05 22.4 0.3 0.00012 21.4 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|313125060|ref|YP_004035324.1| - 0.00092 18.9 0.1 0.0011 18.6 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|313125060|ref|YP_004035324.1| - 0.0021 17.4 0.0 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|313125060|ref|YP_004035324.1| - 0.051 13.2 0.0 0.067 12.8 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase DUF2387 PF09526.5 gi|313125060|ref|YP_004035324.1| - 0.052 13.4 1.1 0.1 12.5 0.7 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Pirin_C PF05726.8 gi|313125060|ref|YP_004035324.1| - 0.091 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Pirin PF02678.11 gi|313125060|ref|YP_004035324.1| - 0.1 12.5 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Pirin TF_Zn_Ribbon PF08271.7 gi|313125060|ref|YP_004035324.1| - 0.29 10.4 2.6 0.59 9.4 1.8 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|313125060|ref|YP_004035324.1| - 0.54 9.6 0.1 0.54 9.6 0.0 2.7 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|313125060|ref|YP_004035324.1| - 0.8 9.7 4.8 12 5.9 3.7 2.1 1 1 1 2 2 2 0 Zinc ribbon domain CstA PF02554.9 gi|313125061|ref|YP_004035325.1| - 3.8e-126 420.7 21.3 3.8e-126 420.7 14.8 2.6 2 1 1 3 3 3 2 Carbon starvation protein CstA DUF4161 PF13722.1 gi|313125061|ref|YP_004035325.1| - 3.4e-29 101.7 3.3 3.4e-29 101.7 2.3 3.7 4 0 0 4 4 4 1 C-terminal domain on CstA (DUF4161) DUF2554 PF10829.3 gi|313125062|ref|YP_004035326.1| - 1.3 9.2 3.6 37 4.5 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2554) Cupin_2 PF07883.6 gi|313125063|ref|YP_004035327.1| - 8.1e-12 44.4 0.0 1.2e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|313125063|ref|YP_004035327.1| - 0.00078 18.8 0.0 0.0012 18.2 0.0 1.3 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|313125063|ref|YP_004035327.1| - 0.0029 17.2 0.0 0.0036 16.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|313125063|ref|YP_004035327.1| - 0.0043 16.4 0.0 0.0067 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) KduI PF04962.7 gi|313125063|ref|YP_004035327.1| - 0.02 13.9 0.1 0.023 13.7 0.1 1.1 1 0 0 1 1 1 0 KduI/IolB family DUF1255 PF06865.6 gi|313125063|ref|YP_004035327.1| - 0.035 14.3 0.0 0.051 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) AraC_binding_2 PF14525.1 gi|313125063|ref|YP_004035327.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain NADH_4Fe-4S PF10589.4 gi|313125064|ref|YP_004035328.1| - 1.2 8.3 3.6 1.5 8.0 1.2 2.2 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DUF4175 PF13779.1 gi|313125065|ref|YP_004035329.1| - 0.045 11.4 2.7 0.055 11.1 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) RED_C PF07807.6 gi|313125065|ref|YP_004035329.1| - 0.34 11.1 5.3 8.2 6.6 0.1 3.0 2 1 1 3 3 3 0 RED-like protein C-terminal region DUF4398 PF14346.1 gi|313125065|ref|YP_004035329.1| - 1.6 8.8 6.4 0.23 11.5 1.8 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Peptidase_M48 PF01435.13 gi|313125066|ref|YP_004035330.1| - 5.4e-32 111.1 0.1 5.9e-31 107.7 0.1 2.0 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|313125066|ref|YP_004035330.1| - 1.8e-07 30.4 0.0 3.5e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|313125066|ref|YP_004035330.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|313125066|ref|YP_004035330.1| - 0.039 13.9 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily Peptidase_U49 PF10463.4 gi|313125066|ref|YP_004035330.1| - 0.2 11.4 0.1 22 4.7 0.0 2.6 3 0 0 3 3 3 0 Peptidase U49 DUF1049 PF06305.6 gi|313125066|ref|YP_004035330.1| - 8.5 5.9 9.7 1.7 8.1 1.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF4129 PF13559.1 gi|313125067|ref|YP_004035331.1| - 6.9e-12 45.1 2.5 6.9e-12 45.1 1.7 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) MGC-24 PF05283.6 gi|313125067|ref|YP_004035331.1| - 0.14 11.9 2.8 0.26 11.0 1.9 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) HrcA PF01628.16 gi|313125068|ref|YP_004035332.1| - 0.0018 17.8 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 HrcA protein C terminal domain DUF4345 PF14248.1 gi|313125068|ref|YP_004035332.1| - 0.0079 15.6 0.6 0.013 14.9 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) SAP25 PF15476.1 gi|313125068|ref|YP_004035332.1| - 0.023 14.2 1.0 0.045 13.2 0.0 1.8 2 0 0 2 2 2 0 Histone deacetylase complex subunit SAP25 Cytochrom_B558a PF05038.8 gi|313125068|ref|YP_004035332.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Cytochrome Cytochrome b558 alpha-subunit DUF3437 PF11919.3 gi|313125068|ref|YP_004035332.1| - 0.099 12.3 1.0 0.25 11.0 0.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) DUF1469 PF07332.6 gi|313125068|ref|YP_004035332.1| - 0.12 12.0 0.3 0.12 12.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) HemY_N PF07219.8 gi|313125068|ref|YP_004035332.1| - 1.2 8.7 13.6 0.43 10.1 0.2 3.4 3 1 0 3 3 3 0 HemY protein N-terminus DUF58 PF01882.13 gi|313125069|ref|YP_004035333.1| - 1.1e-13 51.1 0.8 2.9e-13 49.7 0.6 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|313125069|ref|YP_004035333.1| - 3.1e-08 33.5 3.1 7.4e-08 32.3 2.2 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|313125069|ref|YP_004035333.1| - 0.00061 19.7 0.1 0.0014 18.6 0.1 1.6 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|313125069|ref|YP_004035333.1| - 0.021 14.0 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) EF-hand_6 PF13405.1 gi|313125071|ref|YP_004035335.1| - 0.087 12.7 0.1 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 EF-hand domain TrmB PF01978.14 gi|313125072|ref|YP_004035336.1| - 1.3e-13 50.4 0.0 1.7e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313125072|ref|YP_004035336.1| - 1.6e-06 27.6 0.1 2.3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313125072|ref|YP_004035336.1| - 0.00023 20.7 0.1 0.00037 20.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313125072|ref|YP_004035336.1| - 0.00032 20.2 0.0 0.0017 17.9 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313125072|ref|YP_004035336.1| - 0.0012 18.1 0.1 0.002 17.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313125072|ref|YP_004035336.1| - 0.009 15.7 0.1 0.014 15.1 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313125072|ref|YP_004035336.1| - 0.0095 16.2 0.1 0.019 15.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|313125072|ref|YP_004035336.1| - 0.014 14.9 0.0 0.048 13.2 0.0 1.8 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Crp_2 PF13545.1 gi|313125072|ref|YP_004035336.1| - 0.02 14.6 0.1 0.033 13.9 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|313125072|ref|YP_004035336.1| - 0.021 14.4 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|313125072|ref|YP_004035336.1| - 0.022 14.2 0.0 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|313125072|ref|YP_004035336.1| - 0.18 11.2 0.4 0.33 10.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PALP PF00291.20 gi|313125073|ref|YP_004035337.1| - 1.8e-65 221.1 0.3 2.1e-65 220.9 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|313125073|ref|YP_004035337.1| - 0.022 14.7 0.0 1.2 9.2 0.0 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FlaC_arch PF05377.6 gi|313125074|ref|YP_004035338.1| - 0.0019 18.0 0.2 0.0029 17.4 0.1 1.2 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Mto2_bdg PF12808.2 gi|313125074|ref|YP_004035338.1| - 0.007 16.4 3.4 0.007 16.4 2.3 1.7 2 0 0 2 2 2 1 Micro-tubular organiser Mto1 C-term Mto2-binding region GrpE PF01025.14 gi|313125074|ref|YP_004035338.1| - 0.012 15.1 2.5 0.014 14.9 1.8 1.1 1 0 0 1 1 1 0 GrpE GAS PF13851.1 gi|313125074|ref|YP_004035338.1| - 0.015 14.4 0.2 0.017 14.2 0.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Filament PF00038.16 gi|313125074|ref|YP_004035338.1| - 0.017 14.5 2.5 0.021 14.3 1.8 1.1 1 0 0 1 1 1 0 Intermediate filament protein Mod_r PF07200.8 gi|313125074|ref|YP_004035338.1| - 0.022 14.7 0.7 0.029 14.2 0.5 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Dor1 PF04124.7 gi|313125074|ref|YP_004035338.1| - 0.037 12.4 0.4 0.044 12.2 0.3 1.1 1 0 0 1 1 1 0 Dor1-like family DUF2353 PF09789.4 gi|313125074|ref|YP_004035338.1| - 0.049 12.8 0.8 0.056 12.6 0.6 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) NYD-SP28_assoc PF14775.1 gi|313125074|ref|YP_004035338.1| - 0.056 13.1 1.2 0.18 11.5 0.2 2.1 2 0 0 2 2 2 0 Sperm tail C-terminal domain Vir_act_alpha_C PF10400.4 gi|313125074|ref|YP_004035338.1| - 0.064 13.6 1.6 0.1 12.9 1.1 1.5 1 0 0 1 1 1 0 Virulence activator alpha C-term Malate_synthase PF01274.17 gi|313125074|ref|YP_004035338.1| - 0.08 10.9 0.6 0.092 10.7 0.4 1.1 1 0 0 1 1 1 0 Malate synthase DUF972 PF06156.8 gi|313125074|ref|YP_004035338.1| - 0.1 12.9 0.2 0.14 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Mnd1 PF03962.10 gi|313125074|ref|YP_004035338.1| - 0.11 12.2 1.5 0.12 12.0 1.0 1.1 1 0 0 1 1 1 0 Mnd1 family APG6 PF04111.7 gi|313125074|ref|YP_004035338.1| - 0.12 11.3 1.5 0.14 11.2 1.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Cep57_CLD_2 PF14197.1 gi|313125074|ref|YP_004035338.1| - 0.14 12.0 6.3 0.21 11.5 3.8 1.6 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 PV-1 PF06637.6 gi|313125074|ref|YP_004035338.1| - 0.16 10.4 5.2 0.19 10.2 3.6 1.1 1 0 0 1 1 1 0 PV-1 protein (PLVAP) IncA PF04156.9 gi|313125074|ref|YP_004035338.1| - 0.16 11.5 3.1 0.19 11.3 2.1 1.1 1 0 0 1 1 1 0 IncA protein DUF4407 PF14362.1 gi|313125074|ref|YP_004035338.1| - 0.36 9.7 2.5 0.53 9.1 1.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Bravo_FIGEY PF13882.1 gi|313125074|ref|YP_004035338.1| - 0.45 11.4 4.1 0.26 12.2 1.2 1.7 1 1 1 2 2 2 0 Bravo-like intracellular region DUF883 PF05957.8 gi|313125074|ref|YP_004035338.1| - 6.1 7.3 8.7 13 6.2 5.8 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) 2-Hacid_dh_C PF02826.14 gi|313125075|ref|YP_004035339.1| - 1.6e-58 196.8 0.0 2.8e-58 195.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|313125075|ref|YP_004035339.1| - 6.6e-36 122.7 0.8 1.9e-35 121.2 0.6 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|313125075|ref|YP_004035339.1| - 0.0039 17.0 1.1 0.073 12.9 0.0 3.2 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.20 gi|313125075|ref|YP_004035339.1| - 0.008 15.6 0.2 0.065 12.7 0.0 2.7 2 0 0 2 2 2 1 ACT domain UDPG_MGDP_dh_C PF03720.10 gi|313125075|ref|YP_004035339.1| - 0.012 15.7 0.2 0.12 12.5 0.0 2.6 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.13 gi|313125075|ref|YP_004035339.1| - 0.014 15.3 1.3 0.26 11.3 0.0 3.1 3 0 0 3 3 3 0 TrkA-N domain HAD PF12710.2 gi|313125076|ref|YP_004035340.1| - 4e-24 85.8 0.5 4.8e-24 85.6 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313125076|ref|YP_004035340.1| - 2.2e-18 67.4 0.9 4.9e-15 56.5 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|313125076|ref|YP_004035340.1| - 2.1e-13 50.4 0.2 2.4e-09 37.1 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|313125076|ref|YP_004035340.1| - 3e-10 40.6 0.7 6.2e-09 36.3 0.1 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.1 gi|313125076|ref|YP_004035340.1| - 0.00069 19.7 0.3 0.0017 18.5 0.1 1.7 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Put_Phosphatase PF06888.7 gi|313125076|ref|YP_004035340.1| - 0.00082 18.6 0.0 0.028 13.6 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase S6PP PF05116.8 gi|313125076|ref|YP_004035340.1| - 0.012 14.9 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.1 gi|313125076|ref|YP_004035340.1| - 0.041 13.7 0.0 0.21 11.5 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Usp PF00582.21 gi|313125078|ref|YP_004035342.1| - 1.6e-08 34.8 0.2 2.1e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family Pyr_redox_2 PF07992.9 gi|313125079|ref|YP_004035343.1| - 1.3e-46 159.0 5.7 7.9e-44 149.9 3.9 4.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|313125079|ref|YP_004035343.1| - 2e-37 127.5 2.5 2.7e-37 127.1 0.9 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|313125079|ref|YP_004035343.1| - 2.9e-22 78.8 2.7 1.8e-19 69.8 0.2 3.1 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313125079|ref|YP_004035343.1| - 6.8e-14 51.5 9.9 0.00034 19.6 0.0 4.3 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313125079|ref|YP_004035343.1| - 1.5e-12 48.0 2.0 2.2e-08 34.4 0.5 2.6 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313125079|ref|YP_004035343.1| - 3.6e-11 42.5 4.1 7.5e-08 31.6 1.5 2.5 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|313125079|ref|YP_004035343.1| - 9.7e-11 41.1 6.3 3.2e-07 29.5 0.2 3.8 4 0 0 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.14 gi|313125079|ref|YP_004035343.1| - 2.7e-09 36.5 7.0 0.0019 17.3 0.3 3.2 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.2 gi|313125079|ref|YP_004035343.1| - 1.2e-08 34.4 2.5 7.2e-08 31.9 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313125079|ref|YP_004035343.1| - 6.3e-08 31.5 3.4 0.0002 19.9 0.1 3.6 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|313125079|ref|YP_004035343.1| - 1.1e-06 28.6 1.7 0.0012 18.8 0.3 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|313125079|ref|YP_004035343.1| - 2.8e-05 23.3 3.8 0.023 13.7 0.0 3.0 3 1 0 3 3 3 2 Thi4 family 3HCDH_N PF02737.13 gi|313125079|ref|YP_004035343.1| - 3.3e-05 23.5 3.5 0.0051 16.4 0.0 2.6 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|313125079|ref|YP_004035343.1| - 3.8e-05 23.1 1.1 0.00087 18.7 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|313125079|ref|YP_004035343.1| - 0.00039 20.6 0.1 0.34 11.1 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|313125079|ref|YP_004035343.1| - 0.0015 18.4 0.6 0.047 13.7 0.1 2.6 2 0 0 2 2 2 1 TrkA-N domain Lycopene_cycl PF05834.7 gi|313125079|ref|YP_004035343.1| - 0.0078 15.1 4.5 0.27 10.0 0.0 2.9 3 0 0 3 3 3 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|313125079|ref|YP_004035343.1| - 0.0086 15.6 2.9 0.018 14.6 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|313125079|ref|YP_004035343.1| - 0.011 16.0 0.1 0.12 12.7 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain K_oxygenase PF13434.1 gi|313125079|ref|YP_004035343.1| - 0.022 13.6 0.0 6 5.6 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) CPSase_L_chain PF00289.17 gi|313125079|ref|YP_004035343.1| - 0.054 13.6 0.4 35 4.5 0.0 3.9 4 0 0 4 4 4 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|313125079|ref|YP_004035343.1| - 0.065 12.3 0.1 0.76 8.9 0.0 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amidohydro_2 PF04909.9 gi|313125079|ref|YP_004035343.1| - 0.081 12.4 1.0 0.39 10.2 0.2 2.0 2 0 0 2 2 2 0 Amidohydrolase NAD_binding_9 PF13454.1 gi|313125079|ref|YP_004035343.1| - 0.082 12.6 3.3 8 6.2 0.0 3.2 3 1 1 4 4 4 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|313125079|ref|YP_004035343.1| - 1.4 7.4 4.4 0.31 9.6 0.1 2.1 3 0 0 3 3 3 0 Tryptophan halogenase 2-oxoacid_dh PF00198.18 gi|313125080|ref|YP_004035344.1| - 4.5e-91 304.2 0.0 6.1e-91 303.7 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|313125080|ref|YP_004035344.1| - 3.5e-24 84.2 1.6 7.5e-24 83.1 1.1 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|313125080|ref|YP_004035344.1| - 2.1e-23 81.6 1.6 2.1e-16 59.2 0.1 2.7 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|313125080|ref|YP_004035344.1| - 8.3e-07 28.5 1.7 0.007 16.0 0.0 3.2 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|313125080|ref|YP_004035344.1| - 0.00013 21.2 1.3 0.0056 15.8 0.1 2.6 2 1 1 3 3 3 1 HlyD family secretion protein GCV_H PF01597.14 gi|313125080|ref|YP_004035344.1| - 0.0018 17.9 0.2 0.0046 16.6 0.1 1.8 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|313125080|ref|YP_004035344.1| - 0.0024 18.1 0.9 0.13 12.5 0.0 2.6 1 1 1 2 2 2 1 HlyD family secretion protein RnfC_N PF13375.1 gi|313125080|ref|YP_004035344.1| - 0.053 13.2 0.1 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain NUDIX-like PF09296.6 gi|313125080|ref|YP_004035344.1| - 2.9 8.2 6.7 9.9 6.5 4.6 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain Transket_pyr PF02779.19 gi|313125081|ref|YP_004035345.1| - 4.9e-51 172.7 0.0 6.6e-51 172.3 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|313125081|ref|YP_004035345.1| - 2.7e-38 130.7 0.8 8.6e-38 129.0 0.2 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|313125082|ref|YP_004035346.1| - 5.7e-91 304.3 0.0 6.9e-91 304.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|313125082|ref|YP_004035346.1| - 1.1e-08 34.3 0.0 1.8e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|313125082|ref|YP_004035346.1| - 4.7e-08 32.2 0.1 1.3e-07 30.7 0.1 1.7 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|313125082|ref|YP_004035346.1| - 0.00051 19.6 3.0 0.0009 18.8 0.2 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|313125082|ref|YP_004035346.1| - 0.086 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Mig-14 PF07395.6 gi|313125082|ref|YP_004035346.1| - 0.12 11.3 0.0 0.43 9.5 0.0 1.8 2 0 0 2 2 2 0 Mig-14 Phage_fiber_2 PF03406.8 gi|313125082|ref|YP_004035346.1| - 0.45 10.1 2.9 2.3 7.9 0.6 2.3 2 0 0 2 2 2 0 Phage tail fibre repeat Radical_SAM PF04055.16 gi|313125083|ref|YP_004035347.1| - 2.6e-13 50.4 0.0 4.4e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF849 PF05853.7 gi|313125083|ref|YP_004035347.1| - 0.14 10.9 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) DUF4157 PF13699.1 gi|313125084|ref|YP_004035348.1| - 8.5e-29 99.5 1.4 2.2e-28 98.1 1.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M26_C PF07580.9 gi|313125084|ref|YP_004035348.1| - 0.043 12.1 0.1 0.54 8.4 0.0 2.0 2 0 0 2 2 2 0 M26 IgA1-specific Metallo-endopeptidase C-terminal region Peptidase_M48 PF01435.13 gi|313125084|ref|YP_004035348.1| - 0.2 11.1 2.2 0.6 9.6 0.7 2.1 1 1 1 2 2 2 0 Peptidase family M48 DEAD PF00270.24 gi|313125087|ref|YP_004035351.1| - 3.8e-28 98.0 0.0 2.6e-27 95.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|313125087|ref|YP_004035351.1| - 4.5e-27 95.1 0.0 6.4e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|313125087|ref|YP_004035351.1| - 7e-10 38.6 0.0 2.8e-09 36.6 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|313125087|ref|YP_004035351.1| - 4.4e-07 29.9 0.0 7.5e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|313125087|ref|YP_004035351.1| - 8.8e-06 25.7 0.0 3.2e-05 23.9 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|313125087|ref|YP_004035351.1| - 0.0034 16.8 0.0 0.0086 15.6 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.18 gi|313125087|ref|YP_004035351.1| - 0.029 13.1 0.0 0.045 12.5 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain TrmB PF01978.14 gi|313125087|ref|YP_004035351.1| - 0.1 12.3 0.2 0.43 10.3 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HAD_2 PF13419.1 gi|313125088|ref|YP_004035352.1| - 8.8e-25 87.9 0.4 1e-24 87.7 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313125088|ref|YP_004035352.1| - 6.5e-14 52.8 0.3 8.1e-13 49.2 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125088|ref|YP_004035352.1| - 1.3e-10 40.8 0.1 2.3e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|313125088|ref|YP_004035352.1| - 6.9e-07 29.6 0.1 1e-06 29.0 0.1 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|313125088|ref|YP_004035352.1| - 0.043 13.3 0.0 0.2 11.1 0.0 1.9 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF91 PF01939.11 gi|313125089|ref|YP_004035353.1| - 4.2e-08 32.6 0.0 5.8e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zf-C4_Topoisom PF01396.14 gi|313125089|ref|YP_004035353.1| - 2e-07 30.4 1.4 1.4e-06 27.6 0.1 2.5 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.7 gi|313125089|ref|YP_004035353.1| - 0.01 15.5 0.3 0.01 15.5 0.2 3.6 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Mss51 PF13824.1 gi|313125089|ref|YP_004035353.1| - 0.043 13.6 3.2 3.8 7.4 0.0 3.3 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|313125089|ref|YP_004035353.1| - 0.046 13.1 1.9 8.3 6.0 0.0 3.6 3 0 0 3 3 3 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|313125089|ref|YP_004035353.1| - 0.23 11.3 3.6 0.2 11.5 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin DNA_ligase_ZBD PF03119.11 gi|313125089|ref|YP_004035353.1| - 0.31 10.7 0.1 0.31 10.7 0.1 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA_int_endo PF01974.12 gi|313125090|ref|YP_004035354.1| - 6.5e-34 115.5 0.0 2.2e-22 78.6 0.0 2.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|313125090|ref|YP_004035354.1| - 1.7e-33 113.9 0.3 2e-15 56.0 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|313125090|ref|YP_004035354.1| - 0.17 11.4 0.0 3.5 7.1 0.0 2.3 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term tRNA-synt_1b PF00579.20 gi|313125091|ref|YP_004035355.1| - 4.6e-43 147.4 0.0 3.2e-26 92.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) OCD_Mu_crystall PF02423.10 gi|313125092|ref|YP_004035356.1| - 1.5e-61 207.8 0.9 1.7e-61 207.6 0.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|313125092|ref|YP_004035356.1| - 0.013 15.5 0.0 0.028 14.5 0.0 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DAO PF01266.19 gi|313125093|ref|YP_004035357.1| - 7.1e-87 291.6 5.0 8.1e-87 291.4 3.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313125093|ref|YP_004035357.1| - 1e-09 37.7 0.5 1.5e-09 37.2 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|313125093|ref|YP_004035357.1| - 2.4e-08 34.0 1.4 4.1e-06 26.8 1.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313125093|ref|YP_004035357.1| - 7.3e-08 32.7 2.8 2.3e-06 27.7 2.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313125093|ref|YP_004035357.1| - 2.1e-07 31.2 2.9 4.7e-05 23.7 1.6 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313125093|ref|YP_004035357.1| - 4.5e-07 29.8 0.7 1.4e-06 28.2 0.5 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313125093|ref|YP_004035357.1| - 2.3e-06 26.3 1.7 0.012 14.0 1.1 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|313125093|ref|YP_004035357.1| - 1.4e-05 24.4 5.2 4.3e-05 22.7 3.5 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|313125093|ref|YP_004035357.1| - 0.0001 21.4 1.5 0.00016 20.8 1.1 1.3 1 0 0 1 1 1 1 Thi4 family Amino_oxidase PF01593.19 gi|313125093|ref|YP_004035357.1| - 0.00046 19.3 2.9 0.026 13.6 0.1 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.14 gi|313125093|ref|YP_004035357.1| - 0.0036 16.3 5.8 0.7 8.8 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_7 PF13241.1 gi|313125093|ref|YP_004035357.1| - 0.0069 16.6 0.5 0.013 15.7 0.3 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|313125093|ref|YP_004035357.1| - 0.0085 15.8 3.2 0.27 11.0 0.5 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|313125093|ref|YP_004035357.1| - 0.048 13.0 1.2 0.087 12.1 0.8 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|313125093|ref|YP_004035357.1| - 0.16 10.8 3.3 0.16 10.8 1.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|313125093|ref|YP_004035357.1| - 0.2 10.2 2.3 0.26 9.8 1.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|313125093|ref|YP_004035357.1| - 2.5 7.7 5.8 1.4 8.5 2.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|313125093|ref|YP_004035357.1| - 4.3 6.1 4.6 6.3 5.5 3.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A tRNA-synt_2d PF01409.15 gi|313125094|ref|YP_004035358.1| - 2.6e-79 265.8 0.0 3.3e-79 265.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|313125094|ref|YP_004035358.1| - 7.5e-06 24.9 0.9 0.0038 16.0 0.1 2.7 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|313125094|ref|YP_004035358.1| - 9.4e-05 22.6 1.6 0.0039 17.4 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313125094|ref|YP_004035358.1| - 0.00013 21.5 0.3 0.002 17.7 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|313125094|ref|YP_004035358.1| - 0.00019 21.1 0.0 0.18 11.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|313125094|ref|YP_004035358.1| - 0.0031 17.4 0.0 0.0065 16.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain tRNA-synt_2b PF00587.20 gi|313125094|ref|YP_004035358.1| - 0.0053 16.3 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR PF01047.17 gi|313125094|ref|YP_004035358.1| - 0.02 14.5 0.0 0.42 10.3 0.0 2.4 2 0 0 2 2 2 0 MarR family DUF4364 PF14277.1 gi|313125094|ref|YP_004035358.1| - 0.032 13.8 0.5 0.51 9.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_24 PF13412.1 gi|313125094|ref|YP_004035358.1| - 0.036 13.4 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|313125094|ref|YP_004035358.1| - 0.054 12.9 0.3 0.96 8.9 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|313125094|ref|YP_004035358.1| - 0.12 12.0 1.2 5 6.9 0.0 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|313125094|ref|YP_004035358.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator B5 PF03484.10 gi|313125095|ref|YP_004035359.1| - 3.4e-15 55.6 0.1 3.8e-13 49.0 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|313125095|ref|YP_004035359.1| - 2.6e-11 43.3 0.0 3.9e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|313125095|ref|YP_004035359.1| - 5.8e-06 25.6 0.0 1.2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) Cys_Met_Meta_PP PF01053.15 gi|313125096|ref|YP_004035360.1| - 6.3e-140 465.8 0.0 7e-140 465.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|313125096|ref|YP_004035360.1| - 2.8e-12 46.3 1.2 2.4e-08 33.4 0.1 2.5 2 1 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|313125096|ref|YP_004035360.1| - 1.2e-09 37.7 0.2 7.2e-09 35.1 0.1 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|313125096|ref|YP_004035360.1| - 2.3e-05 23.3 0.0 3.5e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|313125096|ref|YP_004035360.1| - 3.7e-05 22.8 0.0 5.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.6 gi|313125096|ref|YP_004035360.1| - 0.00043 18.6 0.0 0.0011 17.3 0.0 1.6 1 1 0 1 1 1 1 Methionine gamma-lyase tRNA-synt_1 PF00133.17 gi|313125097|ref|YP_004035361.1| - 2e-131 438.9 0.1 1.3e-130 436.2 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|313125097|ref|YP_004035361.1| - 2.8e-34 118.0 0.2 5.7e-34 117.0 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|313125097|ref|YP_004035361.1| - 2.2e-24 85.8 0.2 1.6e-11 43.5 0.0 3.6 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|313125097|ref|YP_004035361.1| - 5e-06 25.8 0.0 0.017 14.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|313125097|ref|YP_004035361.1| - 8.4e-06 25.2 0.0 0.00049 19.4 0.0 2.7 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|313125097|ref|YP_004035361.1| - 0.0001 21.1 0.1 0.0013 17.4 0.0 2.6 3 1 0 3 3 3 1 tRNA synthetases class I (K) DUF126 PF01989.11 gi|313125098|ref|YP_004035362.1| - 0.016 14.8 0.0 0.068 12.8 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function DUF126 DHO_dh PF01180.16 gi|313125099|ref|YP_004035363.1| - 9.9e-85 284.0 0.0 1.1e-84 283.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|313125099|ref|YP_004035363.1| - 3.3e-05 23.1 0.8 0.0022 17.1 0.6 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|313125099|ref|YP_004035363.1| - 0.0091 15.2 0.2 0.036 13.2 0.0 1.9 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|313125099|ref|YP_004035363.1| - 0.1 11.8 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein SymE_toxin PF08845.5 gi|313125100|ref|YP_004035364.1| - 0.0013 18.5 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|313125100|ref|YP_004035364.1| - 0.014 15.0 0.2 0.023 14.4 0.2 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|313125101|ref|YP_004035365.1| - 4.5e-42 141.9 0.4 5.2e-42 141.7 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF4245 PF14030.1 gi|313125102|ref|YP_004035366.1| - 0.87 9.2 5.1 0.16 11.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) Transglut_core3 PF13471.1 gi|313125103|ref|YP_004035367.1| - 8.4e-23 80.4 0.2 1.3e-22 79.7 0.1 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily HTH_24 PF13412.1 gi|313125104|ref|YP_004035368.1| - 1.5e-08 33.9 0.0 5.4e-08 32.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313125104|ref|YP_004035368.1| - 6.5e-05 22.5 0.1 8.7e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313125104|ref|YP_004035368.1| - 0.00012 21.6 0.0 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313125104|ref|YP_004035368.1| - 0.00014 21.5 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|313125104|ref|YP_004035368.1| - 0.00021 20.6 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|313125104|ref|YP_004035368.1| - 0.00031 21.0 0.1 0.00038 20.7 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313125104|ref|YP_004035368.1| - 0.0024 17.4 0.1 0.0036 16.8 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313125104|ref|YP_004035368.1| - 0.0025 17.5 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|313125104|ref|YP_004035368.1| - 0.0031 17.1 0.1 0.0041 16.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.5 gi|313125104|ref|YP_004035368.1| - 0.004 16.8 0.3 0.02 14.6 0.2 2.1 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|313125104|ref|YP_004035368.1| - 0.0045 16.6 0.0 0.008 15.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.7 gi|313125104|ref|YP_004035368.1| - 0.0076 15.4 0.0 0.0083 15.3 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit PaaX PF07848.7 gi|313125104|ref|YP_004035368.1| - 0.014 15.3 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein TFIIE_alpha PF02002.12 gi|313125104|ref|YP_004035368.1| - 0.036 13.5 0.1 0.052 13.0 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|313125104|ref|YP_004035368.1| - 0.048 13.4 0.4 0.083 12.6 0.2 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|313125104|ref|YP_004035368.1| - 0.048 13.2 0.2 0.062 12.9 0.1 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|313125104|ref|YP_004035368.1| - 0.05 13.3 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_42 PF06224.7 gi|313125104|ref|YP_004035368.1| - 0.068 12.5 0.0 0.074 12.3 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|313125104|ref|YP_004035368.1| - 0.069 13.1 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|313125104|ref|YP_004035368.1| - 0.083 13.0 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.1 gi|313125104|ref|YP_004035368.1| - 0.096 12.8 0.0 0.16 12.1 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|313125104|ref|YP_004035368.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 1 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|313125104|ref|YP_004035368.1| - 0.15 12.2 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator YokU PF14122.1 gi|313125105|ref|YP_004035369.1| - 0.029 14.0 0.2 0.07 12.8 0.0 1.7 2 0 0 2 2 2 0 YokU-like protein zinc_ribbon_5 PF13719.1 gi|313125105|ref|YP_004035369.1| - 0.18 11.3 1.9 0.62 9.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHY PF05495.7 gi|313125105|ref|YP_004035369.1| - 0.87 9.7 4.3 1 9.5 0.0 2.5 1 1 1 2 2 2 0 CHY zinc finger zinc_ribbon_4 PF13717.1 gi|313125105|ref|YP_004035369.1| - 0.88 9.3 3.0 1.3 8.7 0.0 2.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-UBP PF02148.14 gi|313125105|ref|YP_004035369.1| - 2.7 8.1 7.0 2.4e+02 1.9 4.9 2.6 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein eIF-1a PF01176.14 gi|313125106|ref|YP_004035370.1| - 1.4e-24 85.2 0.2 1.8e-24 84.9 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Methyltransf_11 PF08241.7 gi|313125107|ref|YP_004035371.1| - 6.5e-11 42.5 0.0 9.8e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125107|ref|YP_004035371.1| - 1.4e-10 41.1 0.1 1.7e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125107|ref|YP_004035371.1| - 6.2e-10 39.3 0.0 1e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|313125107|ref|YP_004035371.1| - 1e-07 31.4 0.0 1.9e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|313125107|ref|YP_004035371.1| - 3.8e-07 30.1 0.0 6.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313125107|ref|YP_004035371.1| - 1.3e-06 28.9 0.0 1.9e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125107|ref|YP_004035371.1| - 2.2e-05 24.8 0.1 3.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313125107|ref|YP_004035371.1| - 3.3e-05 23.5 0.0 3.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|313125107|ref|YP_004035371.1| - 0.01 14.5 0.0 0.013 14.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.1 gi|313125107|ref|YP_004035371.1| - 0.037 14.8 0.2 0.098 13.5 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|313125107|ref|YP_004035371.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Tellurite resistance protein TehB SBP_bac_5 PF00496.17 gi|313125108|ref|YP_004035372.1| - 1.1e-50 172.5 3.4 2.3e-43 148.4 1.5 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313125108|ref|YP_004035372.1| - 0.028 14.4 4.5 0.051 13.5 3.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|313125109|ref|YP_004035373.1| - 6.3e-42 143.1 11.7 6.3e-42 143.1 8.1 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component PDR_assoc PF08370.6 gi|313125109|ref|YP_004035373.1| - 2 7.9 4.9 7.5 6.1 0.5 2.7 2 0 0 2 2 2 0 Plant PDR ABC transporter associated BPD_transp_1 PF00528.17 gi|313125110|ref|YP_004035374.1| - 2.1e-24 86.0 11.6 2.1e-24 86.0 8.0 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313125110|ref|YP_004035374.1| - 0.00079 18.7 0.1 0.00079 18.7 0.1 3.1 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C INCENP_ARK-bind PF03941.10 gi|313125110|ref|YP_004035374.1| - 0.17 11.7 0.6 6.1 6.7 0.5 2.3 2 0 0 2 2 2 0 Inner centromere protein, ARK binding region ABC_tran PF00005.22 gi|313125111|ref|YP_004035375.1| - 1.1e-29 103.5 0.0 1.6e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313125111|ref|YP_004035375.1| - 2.6e-21 75.7 0.6 6.1e-21 74.5 0.4 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313125111|ref|YP_004035375.1| - 6.6e-11 42.6 0.1 1.4e-06 28.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313125111|ref|YP_004035375.1| - 7.3e-07 28.6 0.0 1.1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313125111|ref|YP_004035375.1| - 0.00015 21.9 0.4 0.0016 18.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313125111|ref|YP_004035375.1| - 0.00046 19.3 0.0 0.16 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Mg_chelatase PF01078.16 gi|313125111|ref|YP_004035375.1| - 0.00055 19.1 0.1 0.0014 17.7 0.1 1.6 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|313125111|ref|YP_004035375.1| - 0.00056 20.1 0.2 0.0019 18.3 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|313125111|ref|YP_004035375.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|313125111|ref|YP_004035375.1| - 0.0016 18.7 0.1 0.0039 17.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain ABC_ATPase PF09818.4 gi|313125111|ref|YP_004035375.1| - 0.0022 16.6 0.9 0.019 13.5 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class PRK PF00485.13 gi|313125111|ref|YP_004035375.1| - 0.0028 17.2 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|313125111|ref|YP_004035375.1| - 0.0041 17.9 0.1 0.01 16.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain tRNA_lig_kinase PF08303.6 gi|313125111|ref|YP_004035375.1| - 0.005 16.7 0.0 0.012 15.4 0.0 1.5 2 0 0 2 2 1 1 tRNA ligase kinase domain MobB PF03205.9 gi|313125111|ref|YP_004035375.1| - 0.0051 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|313125111|ref|YP_004035375.1| - 0.0051 16.3 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|313125111|ref|YP_004035375.1| - 0.0053 16.2 0.0 0.007 15.8 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|313125111|ref|YP_004035375.1| - 0.0072 15.7 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|313125111|ref|YP_004035375.1| - 0.015 14.9 0.1 0.042 13.4 0.1 1.7 2 0 0 2 2 2 0 NACHT domain DUF258 PF03193.11 gi|313125111|ref|YP_004035375.1| - 0.029 13.5 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|313125111|ref|YP_004035375.1| - 0.032 13.9 0.1 0.08 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|313125111|ref|YP_004035375.1| - 0.033 13.0 1.0 0.098 11.4 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.1 gi|313125111|ref|YP_004035375.1| - 0.04 13.3 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|313125111|ref|YP_004035375.1| - 0.045 13.2 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|313125111|ref|YP_004035375.1| - 0.048 13.9 1.2 0.1 12.8 0.9 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313125111|ref|YP_004035375.1| - 0.074 13.2 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|313125111|ref|YP_004035375.1| - 0.076 12.7 0.1 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 NTPase PduV-EutP PF10662.4 gi|313125111|ref|YP_004035375.1| - 0.081 12.4 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|313125111|ref|YP_004035375.1| - 0.095 12.6 0.1 0.16 11.8 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|313125111|ref|YP_004035375.1| - 0.1 12.4 0.1 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313125111|ref|YP_004035375.1| - 0.14 11.5 0.2 0.19 11.1 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|313125112|ref|YP_004035376.1| - 9.8e-31 106.8 0.0 1.4e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313125112|ref|YP_004035376.1| - 3.3e-17 62.5 0.0 6.6e-17 61.6 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313125112|ref|YP_004035376.1| - 0.0022 18.0 0.1 0.01 15.8 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|313125112|ref|YP_004035376.1| - 0.0074 16.6 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|313125112|ref|YP_004035376.1| - 0.017 14.6 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|313125112|ref|YP_004035376.1| - 0.019 15.1 0.1 0.097 12.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|313125112|ref|YP_004035376.1| - 0.034 12.8 0.0 0.048 12.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein PRK PF00485.13 gi|313125112|ref|YP_004035376.1| - 0.071 12.6 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|313125112|ref|YP_004035376.1| - 0.16 11.3 0.3 0.42 9.9 0.2 1.8 2 1 0 2 2 2 0 AAA domain PmbA_TldD PF01523.11 gi|313125113|ref|YP_004035377.1| - 9.7e-31 107.1 1.6 1.2e-30 106.8 1.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Mannitol_dh_C PF08125.8 gi|313125113|ref|YP_004035377.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain DUF3487 PF11990.3 gi|313125114|ref|YP_004035378.1| - 0.023 14.0 0.2 0.029 13.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2178 PF09946.4 gi|313125114|ref|YP_004035378.1| - 0.061 13.0 0.1 0.071 12.8 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) DUF1049 PF06305.6 gi|313125114|ref|YP_004035378.1| - 0.77 9.2 6.6 8 6.0 2.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) Peripla_BP_2 PF01497.13 gi|313125115|ref|YP_004035379.1| - 2.5e-24 85.7 0.0 3.7e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF3558 PF12079.3 gi|313125115|ref|YP_004035379.1| - 0.1 12.2 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) GATase_3 PF07685.9 gi|313125116|ref|YP_004035380.1| - 1e-29 103.1 0.0 1.5e-29 102.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|313125116|ref|YP_004035380.1| - 2.6e-22 79.1 0.0 6.7e-22 77.8 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|313125116|ref|YP_004035380.1| - 5.2e-11 42.5 0.1 7.3e-05 22.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain SNO PF01174.14 gi|313125116|ref|YP_004035380.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TP_methylase PF00590.15 gi|313125117|ref|YP_004035381.1| - 3e-34 118.5 0.1 3.6e-34 118.3 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.10 gi|313125118|ref|YP_004035382.1| - 3.2e-49 167.0 1.7 3.8e-49 166.7 1.2 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.11 gi|313125119|ref|YP_004035383.1| - 0 1240.4 0.0 0 1240.1 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|313125119|ref|YP_004035383.1| - 0.092 12.3 0.0 0.28 10.7 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain VWA_2 PF13519.1 gi|313125120|ref|YP_004035384.1| - 1.4e-15 57.8 3.9 1.4e-15 57.8 2.7 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|313125120|ref|YP_004035384.1| - 8.2e-12 44.7 0.0 2.5e-08 33.3 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|313125120|ref|YP_004035384.1| - 1.3e-10 41.3 0.0 2.6e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|313125120|ref|YP_004035384.1| - 5.3e-09 35.9 0.0 9.3e-05 22.1 0.0 2.6 1 1 1 2 2 2 2 AAA domain (dynein-related subfamily) VWA_3 PF13768.1 gi|313125120|ref|YP_004035384.1| - 0.00015 21.5 0.5 0.00029 20.5 0.3 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.18 gi|313125120|ref|YP_004035384.1| - 0.00017 20.4 0.0 0.0023 16.7 0.0 2.3 2 0 0 2 2 2 1 MCM2/3/5 family AAA_16 PF13191.1 gi|313125120|ref|YP_004035384.1| - 0.00048 20.1 0.1 0.0037 17.2 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|313125120|ref|YP_004035384.1| - 0.0044 16.5 0.1 0.19 11.2 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|313125120|ref|YP_004035384.1| - 0.11 12.6 0.3 4.9 7.2 0.1 3.0 2 1 0 2 2 2 0 AAA domain PQQ_2 PF13360.1 gi|313125121|ref|YP_004035385.1| - 3.6e-19 69.1 5.5 2.3e-09 37.0 0.2 2.3 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|313125121|ref|YP_004035385.1| - 1.7e-12 46.2 5.8 0.00096 18.5 0.0 6.3 6 0 0 6 6 6 3 PQQ enzyme repeat PQQ_3 PF13570.1 gi|313125121|ref|YP_004035385.1| - 1.8e-12 47.0 16.1 0.0018 18.4 0.1 7.8 8 1 1 9 9 9 4 PQQ-like domain MHC_II_alpha PF00993.15 gi|313125121|ref|YP_004035385.1| - 0.0085 15.6 0.1 0.026 14.0 0.1 1.8 1 0 0 1 1 1 1 Class II histocompatibility antigen, alpha domain HCBP_related PF06594.6 gi|313125121|ref|YP_004035385.1| - 0.11 12.1 1.1 0.28 10.8 0.8 1.8 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain DUF3209 PF11483.3 gi|313125122|ref|YP_004035386.1| - 1.1e-45 154.9 5.2 1.2e-45 154.8 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) NIT PF08376.5 gi|313125122|ref|YP_004035386.1| - 0.0015 18.0 0.7 0.0019 17.7 0.5 1.1 1 0 0 1 1 1 1 Nitrate and nitrite sensing TPR_16 PF13432.1 gi|313125122|ref|YP_004035386.1| - 0.12 13.0 2.8 0.26 11.9 0.9 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat CbiX PF01903.12 gi|313125123|ref|YP_004035387.1| - 4.1e-48 161.8 0.0 1.1e-24 86.5 0.0 2.4 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|313125123|ref|YP_004035387.1| - 1.7e-10 40.6 0.1 3e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|313125123|ref|YP_004035387.1| - 2.7e-08 33.2 0.0 6e-05 22.2 0.0 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|313125123|ref|YP_004035387.1| - 3e-05 23.1 0.0 9.4e-05 21.5 0.0 1.9 1 1 0 1 1 1 1 Ferrochelatase Suc_Fer-like PF06999.7 gi|313125123|ref|YP_004035387.1| - 0.00022 21.3 0.1 0.00067 19.7 0.0 1.8 2 0 0 2 2 2 1 Sucrase/ferredoxin-like LAGLIDADG_3 PF14528.1 gi|313125124|ref|YP_004035388.1| - 0.02 15.1 0.0 0.037 14.2 0.0 1.5 1 0 0 1 1 1 0 LAGLIDADG-like domain Fer4_15 PF13459.1 gi|313125125|ref|YP_004035389.1| - 2.4e-10 40.8 7.2 6.9e-10 39.3 5.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|313125125|ref|YP_004035389.1| - 0.0032 17.8 3.1 0.0062 16.8 2.2 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|313125126|ref|YP_004035390.1| - 2.1e-32 112.5 0.3 2.5e-32 112.2 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|313125127|ref|YP_004035391.1| - 4.3e-38 131.1 0.0 5.3e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|313125128|ref|YP_004035392.1| - 3e-31 106.9 0.0 8.1e-31 105.5 0.0 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|313125128|ref|YP_004035392.1| - 4.8e-28 97.8 0.0 1.1e-27 96.6 0.0 1.6 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|313125129|ref|YP_004035393.1| - 2.9e-40 138.2 0.3 3.5e-40 137.9 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.6 gi|313125129|ref|YP_004035393.1| - 0.0071 16.9 0.0 0.018 15.7 0.0 1.6 1 0 0 1 1 1 1 Regulator of ribonuclease activity B TP_methylase PF00590.15 gi|313125130|ref|YP_004035394.1| - 2e-35 122.4 0.2 2.5e-35 122.1 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|313125130|ref|YP_004035394.1| - 0.022 15.3 0.3 0.36 11.4 0.2 2.3 1 1 1 2 2 2 0 Glyoxalase-like domain Methyltransf_18 PF12847.2 gi|313125131|ref|YP_004035395.1| - 7.6e-12 45.8 0.2 1.4e-11 44.9 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313125131|ref|YP_004035395.1| - 6.5e-08 32.1 0.1 1.4e-07 31.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|313125131|ref|YP_004035395.1| - 5.9e-06 25.7 0.0 8.5e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|313125131|ref|YP_004035395.1| - 7.6e-05 22.3 0.0 8.3e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125131|ref|YP_004035395.1| - 8.8e-05 22.8 0.0 0.00013 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313125131|ref|YP_004035395.1| - 0.0001 22.3 0.1 0.00016 21.6 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|313125131|ref|YP_004035395.1| - 0.0001 21.9 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|313125131|ref|YP_004035395.1| - 0.00028 20.0 0.1 0.00043 19.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|313125131|ref|YP_004035395.1| - 0.00094 19.6 0.2 0.0017 18.8 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|313125131|ref|YP_004035395.1| - 0.0015 17.8 0.0 0.0025 17.1 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 CMAS PF02353.15 gi|313125131|ref|YP_004035395.1| - 0.0031 16.6 0.0 0.0045 16.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|313125131|ref|YP_004035395.1| - 0.024 13.7 0.1 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) GATase_3 PF07685.9 gi|313125131|ref|YP_004035395.1| - 0.074 12.6 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CbiM PF01891.11 gi|313125132|ref|YP_004035396.1| - 4e-50 170.2 24.0 4.8e-50 170.0 16.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.10 gi|313125133|ref|YP_004035397.1| - 3e-14 52.7 0.0 4.2e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.11 gi|313125134|ref|YP_004035398.1| - 1.4e-32 113.1 10.2 1.9e-32 112.6 7.0 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|313125135|ref|YP_004035399.1| - 7.1e-32 110.5 0.0 9.2e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125135|ref|YP_004035399.1| - 1.9e-15 57.6 0.0 6.6e-08 32.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313125135|ref|YP_004035399.1| - 1.1e-08 34.5 0.0 4.3e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|313125135|ref|YP_004035399.1| - 7.9e-06 25.1 0.0 0.044 12.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|313125135|ref|YP_004035399.1| - 3.8e-05 23.1 0.0 6.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313125135|ref|YP_004035399.1| - 0.00036 20.9 0.0 0.00048 20.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|313125135|ref|YP_004035399.1| - 0.0011 18.7 0.1 0.015 15.1 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|313125135|ref|YP_004035399.1| - 0.0012 18.3 0.0 0.22 10.9 0.1 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|313125135|ref|YP_004035399.1| - 0.0013 18.7 0.0 0.0027 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|313125135|ref|YP_004035399.1| - 0.0017 17.5 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|313125135|ref|YP_004035399.1| - 0.0025 16.9 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|313125135|ref|YP_004035399.1| - 0.011 15.8 0.0 0.031 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF4350 PF14258.1 gi|313125135|ref|YP_004035399.1| - 0.015 15.5 0.2 0.051 13.7 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) AAA_13 PF13166.1 gi|313125135|ref|YP_004035399.1| - 0.025 13.0 0.0 0.19 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|313125135|ref|YP_004035399.1| - 0.029 13.7 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|313125135|ref|YP_004035399.1| - 0.03 14.0 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|313125135|ref|YP_004035399.1| - 0.031 13.8 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|313125135|ref|YP_004035399.1| - 0.039 13.3 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313125135|ref|YP_004035399.1| - 0.042 13.5 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|313125135|ref|YP_004035399.1| - 0.082 12.8 0.0 0.51 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|313125135|ref|YP_004035399.1| - 0.088 12.4 0.1 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase UPF0079 PF02367.12 gi|313125135|ref|YP_004035399.1| - 0.09 12.4 0.1 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 HTH_10 PF04967.7 gi|313125136|ref|YP_004035400.1| - 1.8e-17 62.6 0.1 2.8e-17 62.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313125136|ref|YP_004035400.1| - 3.1e-06 26.5 1.0 6.6e-05 22.2 0.7 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|313125136|ref|YP_004035400.1| - 0.00071 18.8 1.3 0.0017 17.5 0.9 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|313125136|ref|YP_004035400.1| - 0.015 15.0 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|313125136|ref|YP_004035400.1| - 0.02 14.5 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TetR_N PF00440.18 gi|313125136|ref|YP_004035400.1| - 0.022 14.3 0.1 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family GerE PF00196.14 gi|313125136|ref|YP_004035400.1| - 0.059 12.7 0.1 4.2 6.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|313125136|ref|YP_004035400.1| - 0.071 12.6 0.5 0.38 10.3 0.3 2.1 1 1 0 1 1 1 0 LexA DNA binding domain Coat_F PF07875.7 gi|313125136|ref|YP_004035400.1| - 0.073 13.1 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Coat F domain Mga PF05043.8 gi|313125136|ref|YP_004035400.1| - 0.089 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_30 PF13556.1 gi|313125136|ref|YP_004035400.1| - 0.09 12.3 0.6 0.27 10.8 0.4 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|313125136|ref|YP_004035400.1| - 0.095 12.1 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Lipoprotein_20 PF13942.1 gi|313125136|ref|YP_004035400.1| - 0.13 11.8 0.1 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 YfhG lipoprotein Gate PF07670.9 gi|313125137|ref|YP_004035401.1| - 9.8e-10 38.3 24.3 2.5e-09 36.9 2.5 3.5 3 2 0 3 3 3 2 Nucleoside recognition HTH_AsnC-type PF13404.1 gi|313125139|ref|YP_004035403.1| - 1.2e-14 53.5 1.5 1.9e-14 52.8 1.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|313125139|ref|YP_004035403.1| - 2.7e-13 49.0 0.3 6.1e-13 47.9 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|313125139|ref|YP_004035403.1| - 1.1e-09 37.8 0.1 1.7e-09 37.2 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|313125139|ref|YP_004035403.1| - 0.00084 18.9 0.1 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313125139|ref|YP_004035403.1| - 0.0024 17.5 0.1 0.0088 15.7 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313125139|ref|YP_004035403.1| - 0.0037 16.8 0.2 0.0062 16.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313125139|ref|YP_004035403.1| - 0.0053 16.5 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313125139|ref|YP_004035403.1| - 0.016 14.8 0.1 0.027 14.0 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF603 PF04645.7 gi|313125139|ref|YP_004035403.1| - 0.054 13.4 0.2 0.11 12.3 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function, DUF603 MarR PF01047.17 gi|313125139|ref|YP_004035403.1| - 0.08 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF1819 PF08849.6 gi|313125139|ref|YP_004035403.1| - 0.095 12.0 1.0 1.1 8.6 0.0 2.4 3 0 0 3 3 3 0 Putative inner membrane protein (DUF1819) HTH_10 PF04967.7 gi|313125141|ref|YP_004035405.1| - 2.7e-20 71.6 0.1 5.1e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_8 PF02954.14 gi|313125141|ref|YP_004035405.1| - 0.025 14.1 0.1 0.27 10.8 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_1 PF00126.22 gi|313125141|ref|YP_004035405.1| - 0.069 12.8 0.1 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|313125141|ref|YP_004035405.1| - 0.071 12.4 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 ABC_tran PF00005.22 gi|313125142|ref|YP_004035406.1| - 4.6e-30 104.7 0.0 8.2e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125142|ref|YP_004035406.1| - 3.7e-16 59.9 0.0 4.5e-10 39.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313125142|ref|YP_004035406.1| - 0.00012 22.1 0.1 0.00047 20.1 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|313125142|ref|YP_004035406.1| - 0.00039 20.6 0.0 0.0038 17.4 0.0 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|313125142|ref|YP_004035406.1| - 0.001 18.5 0.2 0.0022 17.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|313125142|ref|YP_004035406.1| - 0.0021 17.5 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|313125142|ref|YP_004035406.1| - 0.0048 17.0 0.0 0.021 14.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain KdpD PF02702.12 gi|313125142|ref|YP_004035406.1| - 0.0067 15.5 0.1 0.018 14.1 0.0 1.7 1 1 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain A_amylase_inhib PF01356.14 gi|313125142|ref|YP_004035406.1| - 0.0072 16.0 0.1 0.41 10.4 0.0 2.4 2 0 0 2 2 2 1 Alpha amylase inhibitor AAA_23 PF13476.1 gi|313125142|ref|YP_004035406.1| - 0.012 16.0 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|313125142|ref|YP_004035406.1| - 0.017 14.3 0.0 0.74 8.9 0.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|313125142|ref|YP_004035406.1| - 0.053 14.0 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_28 PF13521.1 gi|313125142|ref|YP_004035406.1| - 0.054 13.4 0.3 0.27 11.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain Thymidylate_kin PF02223.12 gi|313125142|ref|YP_004035406.1| - 0.057 12.7 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_17 PF13207.1 gi|313125142|ref|YP_004035406.1| - 0.065 14.0 0.2 0.21 12.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|313125142|ref|YP_004035406.1| - 0.075 12.7 0.1 0.25 11.1 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_14 PF13173.1 gi|313125142|ref|YP_004035406.1| - 0.086 12.7 0.0 2.9 7.8 0.0 2.8 3 1 0 3 3 3 0 AAA domain AAA_15 PF13175.1 gi|313125142|ref|YP_004035406.1| - 0.14 11.1 0.0 6.4 5.7 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|313125142|ref|YP_004035406.1| - 0.2 10.3 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|313125142|ref|YP_004035406.1| - 0.45 10.3 4.3 0.24 11.2 0.2 2.6 2 1 1 3 3 3 0 AAA domain ABC2_membrane PF01061.19 gi|313125143|ref|YP_004035407.1| - 3e-28 98.4 17.9 4.4e-28 97.8 12.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|313125143|ref|YP_004035407.1| - 1.3e-12 47.3 22.2 1.3e-12 47.3 15.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313125143|ref|YP_004035407.1| - 6.5e-05 22.2 23.7 0.0001 21.5 16.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein Methyltransf_18 PF12847.2 gi|313125144|ref|YP_004035408.1| - 5.6e-14 52.6 0.0 1.2e-13 51.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain TehB PF03848.9 gi|313125144|ref|YP_004035408.1| - 9.4e-12 44.4 0.0 1e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|313125144|ref|YP_004035408.1| - 1.5e-10 40.9 0.0 2.6e-10 40.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313125144|ref|YP_004035408.1| - 4.9e-07 30.1 0.0 1e-06 29.1 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313125144|ref|YP_004035408.1| - 6.3e-07 29.4 0.2 9.1e-07 28.9 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313125144|ref|YP_004035408.1| - 1.7e-06 27.7 0.0 2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313125144|ref|YP_004035408.1| - 1.8e-06 27.2 0.0 2.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|313125144|ref|YP_004035408.1| - 2.4e-06 27.0 0.0 3.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|313125144|ref|YP_004035408.1| - 2.6e-06 27.7 0.0 4.2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125144|ref|YP_004035408.1| - 4.3e-05 23.8 0.1 0.00011 22.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain TPMT PF05724.6 gi|313125144|ref|YP_004035408.1| - 0.00049 19.5 0.0 0.0006 19.3 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.5 gi|313125144|ref|YP_004035408.1| - 0.00072 19.1 0.0 0.00093 18.7 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF938 PF06080.7 gi|313125144|ref|YP_004035408.1| - 0.048 13.2 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) NifU PF01106.12 gi|313125145|ref|YP_004035409.1| - 7.9e-12 44.7 0.0 1.1e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain HTH_DeoR PF08220.7 gi|313125145|ref|YP_004035409.1| - 0.044 13.3 0.3 24 4.5 0.1 3.0 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313125146|ref|YP_004035410.1| - 8.6e-10 38.4 0.0 1.8e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|313125146|ref|YP_004035410.1| - 0.0012 18.4 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain GATase PF00117.23 gi|313125148|ref|YP_004035412.1| - 3.5e-21 75.5 0.0 4.6e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313125148|ref|YP_004035412.1| - 4.7e-12 45.8 0.6 1.4e-10 40.9 0.4 2.3 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|313125148|ref|YP_004035412.1| - 0.0081 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain peroxidase PF00141.18 gi|313125149|ref|YP_004035413.1| - 5.1e-87 291.1 0.0 4.8e-48 163.6 0.0 2.2 2 0 0 2 2 2 2 Peroxidase PemK PF02452.12 gi|313125150|ref|YP_004035414.1| - 0.067 13.3 0.0 0.067 13.3 0.0 1.1 1 0 0 1 1 1 0 PemK-like protein HTH_20 PF12840.2 gi|313125151|ref|YP_004035415.1| - 0.0019 17.9 0.0 0.0027 17.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313125151|ref|YP_004035415.1| - 0.0053 16.5 0.0 0.0099 15.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|313125151|ref|YP_004035415.1| - 0.01 15.8 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor Rrf2 PF02082.15 gi|313125151|ref|YP_004035415.1| - 0.015 15.3 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|313125151|ref|YP_004035415.1| - 0.031 13.7 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.12 gi|313125151|ref|YP_004035415.1| - 0.045 13.2 0.0 0.057 12.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Phage_rep_org_N PF09681.5 gi|313125151|ref|YP_004035415.1| - 0.062 12.8 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF1495 PF07381.6 gi|313125151|ref|YP_004035415.1| - 0.072 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) CotE PF10628.4 gi|313125151|ref|YP_004035415.1| - 0.085 12.2 0.0 0.1 11.9 0.0 1.0 1 0 0 1 1 1 0 Outer spore coat protein E (CotE) Fe_dep_repress PF01325.14 gi|313125151|ref|YP_004035415.1| - 0.091 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mrr_N PF14338.1 gi|313125151|ref|YP_004035415.1| - 0.13 12.4 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain MatE PF01554.13 gi|313125152|ref|YP_004035416.1| - 2.2e-64 215.9 28.9 6e-33 113.7 3.8 2.6 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|313125152|ref|YP_004035416.1| - 1.6e-07 31.2 12.1 1.6e-07 31.2 8.4 5.0 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Fer2 PF00111.22 gi|313125153|ref|YP_004035417.1| - 1e-13 50.8 0.8 2e-13 49.8 0.6 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Autophagy_Cterm PF10381.4 gi|313125154|ref|YP_004035418.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 Autophagocytosis associated protein C-terminal NAD_binding_2 PF03446.10 gi|313125155|ref|YP_004035419.1| - 3.2e-38 131.1 0.1 4.6e-38 130.6 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|313125155|ref|YP_004035419.1| - 4.3e-22 78.6 0.0 5.8e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|313125155|ref|YP_004035419.1| - 8.5e-06 26.1 0.1 1.4e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|313125155|ref|YP_004035419.1| - 3.7e-05 23.4 0.1 5.7e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|313125155|ref|YP_004035419.1| - 0.00015 21.0 0.0 0.00021 20.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|313125155|ref|YP_004035419.1| - 0.00027 20.9 0.2 0.00069 19.6 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_11 PF14833.1 gi|313125155|ref|YP_004035419.1| - 0.00037 20.5 0.1 0.0079 16.2 0.0 2.7 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Methyltransf_18 PF12847.2 gi|313125155|ref|YP_004035419.1| - 0.0039 17.7 0.1 0.01 16.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain NAD_binding_10 PF13460.1 gi|313125155|ref|YP_004035419.1| - 0.0095 15.9 1.2 0.27 11.2 0.0 3.2 3 1 1 4 4 4 1 NADH(P)-binding DapB_N PF01113.15 gi|313125155|ref|YP_004035419.1| - 0.016 15.1 0.9 0.052 13.4 0.6 1.9 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.9 gi|313125155|ref|YP_004035419.1| - 0.018 14.4 0.0 0.039 13.3 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.17 gi|313125155|ref|YP_004035419.1| - 0.13 12.7 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CBS PF00571.23 gi|313125156|ref|YP_004035420.1| - 6.7e-18 64.2 5.5 9.6e-09 34.9 0.4 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_M29 PF02073.10 gi|313125157|ref|YP_004035421.1| - 8.2e-110 367.2 0.1 9.4e-110 367.0 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4388 PF14332.1 gi|313125157|ref|YP_004035421.1| - 0.12 12.2 0.1 0.43 10.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4388) Ribosomal_S6e PF01092.14 gi|313125158|ref|YP_004035422.1| - 1.1e-38 131.7 0.8 1.3e-38 131.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e zinc_ribbon_2 PF13240.1 gi|313125161|ref|YP_004035425.1| - 0.00063 19.1 0.1 0.033 13.6 0.0 2.1 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|313125161|ref|YP_004035425.1| - 0.0047 16.7 0.3 0.0073 16.1 0.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon YhfH PF14149.1 gi|313125161|ref|YP_004035425.1| - 0.0058 16.3 2.4 0.15 11.8 0.2 2.1 2 0 0 2 2 2 1 YhfH-like protein Zn_Tnp_IS1595 PF12760.2 gi|313125161|ref|YP_004035425.1| - 0.0069 16.1 0.2 0.01 15.6 0.1 1.3 1 1 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313125161|ref|YP_004035425.1| - 0.0093 15.1 0.2 2.4 7.5 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|313125161|ref|YP_004035425.1| - 0.0099 15.2 0.9 0.13 11.6 0.1 2.0 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Nudix_N_2 PF14803.1 gi|313125161|ref|YP_004035425.1| - 0.011 15.3 1.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|313125161|ref|YP_004035425.1| - 0.013 15.4 0.9 0.16 11.9 0.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|313125161|ref|YP_004035425.1| - 0.013 14.9 0.9 0.49 9.9 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|313125161|ref|YP_004035425.1| - 0.016 15.2 0.4 0.36 10.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.1 gi|313125161|ref|YP_004035425.1| - 0.016 14.3 0.2 0.027 13.6 0.1 1.3 1 1 0 1 1 1 0 Transcription factor zinc-finger Rpr2 PF04032.11 gi|313125161|ref|YP_004035425.1| - 0.021 14.6 0.2 0.026 14.4 0.1 1.1 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-CSL PF05207.8 gi|313125161|ref|YP_004035425.1| - 0.047 13.2 0.5 0.049 13.1 0.3 1.1 1 0 0 1 1 1 0 CSL zinc finger zf-Sec23_Sec24 PF04810.10 gi|313125161|ref|YP_004035425.1| - 0.072 12.6 0.6 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger C1_1 PF00130.17 gi|313125161|ref|YP_004035425.1| - 0.086 12.5 0.3 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.1 gi|313125161|ref|YP_004035425.1| - 0.088 13.1 2.9 1.8 8.9 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Pox_A3L PF05288.6 gi|313125161|ref|YP_004035425.1| - 0.12 12.1 0.4 0.17 11.6 0.0 1.4 2 0 0 2 2 2 0 Poxvirus A3L Protein zf-tcix PF14952.1 gi|313125161|ref|YP_004035425.1| - 0.13 11.5 2.0 2 7.8 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding ADK_lid PF05191.9 gi|313125161|ref|YP_004035425.1| - 0.19 11.4 1.1 4.7 6.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid OrfB_Zn_ribbon PF07282.6 gi|313125161|ref|YP_004035425.1| - 0.25 11.0 1.9 0.87 9.2 1.3 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.8 gi|313125161|ref|YP_004035425.1| - 0.27 11.0 1.9 2.2 8.1 0.0 2.0 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|313125161|ref|YP_004035425.1| - 0.32 10.3 2.1 5.7 6.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|313125161|ref|YP_004035425.1| - 0.32 11.1 3.4 1.3 9.2 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNA_POL_M_15KD PF02150.11 gi|313125161|ref|YP_004035425.1| - 0.43 10.3 2.2 2.8 7.6 1.5 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-RanBP PF00641.13 gi|313125161|ref|YP_004035425.1| - 0.74 8.9 4.0 0.51 9.4 0.2 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Fer4_8 PF13183.1 gi|313125161|ref|YP_004035425.1| - 1.4 8.9 4.3 15 5.6 3.0 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain zf-CCHC_6 PF15288.1 gi|313125161|ref|YP_004035425.1| - 2.2 8.0 4.2 19 4.9 0.2 2.1 2 0 0 2 2 2 0 Zinc knuckle DHHA1 PF02272.14 gi|313125162|ref|YP_004035426.1| - 0.00049 19.7 0.2 0.0016 18.1 0.1 1.9 1 0 0 1 1 1 1 DHHA1 domain TFIIE-A_C-term PF11521.3 gi|313125162|ref|YP_004035426.1| - 0.11 12.3 0.3 0.11 12.3 0.2 2.8 3 0 0 3 3 3 0 C-terminal general transcription factor TFIIE alpha Usp PF00582.21 gi|313125163|ref|YP_004035427.1| - 9.4e-35 119.8 4.3 1.1e-34 119.6 3.0 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|313125163|ref|YP_004035427.1| - 0.0083 15.8 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase Sipho_Gp37 PF14594.1 gi|313125163|ref|YP_004035427.1| - 0.014 14.6 0.4 0.018 14.2 0.3 1.1 1 0 0 1 1 1 0 Siphovirus ReqiPepy6 Gp37-like protein FliG_C PF01706.11 gi|313125163|ref|YP_004035427.1| - 0.019 14.9 1.2 0.047 13.6 0.7 1.8 1 1 1 2 2 2 0 FliG C-terminal domain MdcG PF10620.4 gi|313125163|ref|YP_004035427.1| - 0.056 12.9 2.1 0.072 12.6 0.7 1.6 1 1 1 2 2 2 0 Phosphoribosyl-dephospho-CoA transferase MdcG Usp PF00582.21 gi|313125164|ref|YP_004035428.1| - 1.5e-14 54.3 6.1 1.9e-14 54.0 4.3 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|313125164|ref|YP_004035428.1| - 0.0032 16.8 0.6 1.1 8.5 0.3 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel Acetyltransf_1 PF00583.19 gi|313125165|ref|YP_004035429.1| - 3.5e-14 52.5 0.0 4.9e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313125165|ref|YP_004035429.1| - 3.1e-07 30.4 0.0 3.9e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125165|ref|YP_004035429.1| - 7.2e-07 28.8 0.0 1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|313125165|ref|YP_004035429.1| - 7.7e-07 29.3 0.0 9e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125165|ref|YP_004035429.1| - 8.3e-06 25.8 0.0 1.4e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313125165|ref|YP_004035429.1| - 0.00029 20.8 0.0 0.00039 20.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|313125165|ref|YP_004035429.1| - 0.0026 17.7 0.0 0.0036 17.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313125165|ref|YP_004035429.1| - 0.0031 17.3 0.0 0.033 14.0 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313125165|ref|YP_004035429.1| - 0.058 13.2 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|313125166|ref|YP_004035430.1| - 1.1e-15 58.0 2.5 2.4e-15 56.9 1.7 1.5 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.19 gi|313125166|ref|YP_004035430.1| - 0.025 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PIG-L PF02585.12 gi|313125166|ref|YP_004035430.1| - 0.094 13.2 0.2 0.12 12.8 0.1 1.1 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Pneumo_ncap PF03246.8 gi|313125166|ref|YP_004035430.1| - 0.12 10.8 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein ABC_tran PF00005.22 gi|313125169|ref|YP_004035433.1| - 3.1e-57 192.6 0.0 1.8e-29 102.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|313125169|ref|YP_004035433.1| - 4.4e-42 142.2 2.8 6.4e-22 77.6 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313125169|ref|YP_004035433.1| - 3.2e-17 63.4 0.1 3.9e-08 33.6 0.0 3.8 3 1 0 4 4 4 2 AAA domain SMC_N PF02463.14 gi|313125169|ref|YP_004035433.1| - 4e-06 26.2 0.1 0.11 11.7 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313125169|ref|YP_004035433.1| - 6.3e-06 25.6 1.7 0.059 12.8 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313125169|ref|YP_004035433.1| - 3.8e-05 23.8 3.0 0.24 11.5 0.4 4.2 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|313125169|ref|YP_004035433.1| - 0.00033 20.1 0.3 0.45 9.8 0.0 3.5 4 0 0 4 4 4 1 AAA domain AAA_5 PF07728.9 gi|313125169|ref|YP_004035433.1| - 0.00043 20.0 0.2 0.56 9.9 0.1 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|313125169|ref|YP_004035433.1| - 0.0047 16.4 0.1 1.9 7.9 0.0 2.6 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|313125169|ref|YP_004035433.1| - 0.0052 15.8 0.1 0.34 9.9 0.0 2.6 3 0 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.1 gi|313125169|ref|YP_004035433.1| - 0.0082 16.1 7.9 0.47 10.4 0.4 4.0 4 1 0 4 4 4 2 AAA ATPase domain AAA_10 PF12846.2 gi|313125169|ref|YP_004035433.1| - 0.015 14.7 2.5 1.9 7.8 0.3 3.2 3 1 0 3 3 3 0 AAA-like domain DUF258 PF03193.11 gi|313125169|ref|YP_004035433.1| - 0.02 14.0 0.9 1.6 7.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|313125169|ref|YP_004035433.1| - 0.027 13.5 3.6 0.18 10.8 0.1 2.3 2 0 0 2 2 2 0 AIG1 family AAA PF00004.24 gi|313125169|ref|YP_004035433.1| - 0.042 14.0 0.3 0.85 9.8 0.0 3.1 5 0 0 5 5 2 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|313125169|ref|YP_004035433.1| - 0.098 12.1 0.3 0.71 9.3 0.0 2.1 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|313125169|ref|YP_004035433.1| - 0.12 12.0 1.1 2.6 7.7 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|313125169|ref|YP_004035433.1| - 0.2 10.5 1.3 2 7.2 0.1 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|313125169|ref|YP_004035433.1| - 0.21 11.4 1.0 13 5.6 0.2 2.8 2 1 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|313125169|ref|YP_004035433.1| - 0.23 10.9 1.5 29 4.0 0.1 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain KaiC PF06745.8 gi|313125169|ref|YP_004035433.1| - 0.23 10.5 0.7 18 4.3 0.0 2.5 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.17 gi|313125169|ref|YP_004035433.1| - 0.24 10.2 2.1 8.9 5.0 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain TAFII28 PF04719.9 gi|313125169|ref|YP_004035433.1| - 0.24 11.1 0.2 19 5.1 0.0 3.0 3 0 0 3 3 2 0 hTAFII28-like protein conserved region RNA_helicase PF00910.17 gi|313125169|ref|YP_004035433.1| - 0.3 11.2 0.5 6.3 7.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Hpr_kinase_C PF07475.7 gi|313125169|ref|YP_004035433.1| - 0.36 10.1 4.6 6.6 5.9 0.2 2.5 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain SbcCD_C PF13558.1 gi|313125169|ref|YP_004035433.1| - 0.38 10.7 2.3 29 4.6 0.1 3.7 3 2 0 3 3 3 0 Putative exonuclease SbcCD, C subunit DUF3265 PF11665.3 gi|313125169|ref|YP_004035433.1| - 0.51 10.2 1.5 4.5 7.1 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) DUF87 PF01935.12 gi|313125169|ref|YP_004035433.1| - 0.89 9.3 3.3 12 5.6 0.0 2.7 3 0 0 3 3 2 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|313125169|ref|YP_004035433.1| - 0.96 9.7 2.9 7.4 6.8 0.0 2.9 2 0 0 2 2 2 0 AAA domain SBP_bac_5 PF00496.17 gi|313125170|ref|YP_004035434.1| - 3e-94 315.9 3.7 5.1e-94 315.1 2.5 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313125170|ref|YP_004035434.1| - 3.7e-05 23.3 4.6 7.3e-05 22.4 3.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|313125170|ref|YP_004035434.1| - 0.26 10.5 2.1 0.44 9.7 1.5 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.17 gi|313125171|ref|YP_004035435.1| - 1.7e-36 125.4 12.6 2.8e-36 124.7 8.7 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313125172|ref|YP_004035436.1| - 9.7e-34 116.4 4.9 9.7e-34 116.4 3.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313125172|ref|YP_004035436.1| - 0.00045 19.5 0.3 0.00045 19.5 0.2 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C EpuA PF11772.3 gi|313125172|ref|YP_004035436.1| - 1.1 8.6 5.6 14 5.2 0.0 2.8 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta DUF1772 PF08592.6 gi|313125173|ref|YP_004035437.1| - 0.043 13.5 0.6 0.34 10.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) Aph-1 PF06105.7 gi|313125173|ref|YP_004035437.1| - 0.1 11.8 0.1 0.17 11.1 0.0 1.2 1 1 0 1 1 1 0 Aph-1 protein DUF2910 PF11139.3 gi|313125173|ref|YP_004035437.1| - 0.13 11.3 9.1 0.24 10.4 6.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2910) OrfB_IS605 PF01385.14 gi|313125174|ref|YP_004035438.1| - 1.4e-43 148.8 0.0 2.3e-43 148.2 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313125174|ref|YP_004035438.1| - 2.7e-23 81.3 1.9 5.9e-23 80.3 1.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|313125174|ref|YP_004035438.1| - 0.19 11.8 2.7 0.5 10.4 1.9 1.8 1 0 0 1 1 1 0 C1-like domain Ribosomal_L37ae PF01780.14 gi|313125174|ref|YP_004035438.1| - 0.42 10.5 2.8 0.53 10.1 0.4 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family Amidohydro_4 PF13147.1 gi|313125175|ref|YP_004035439.1| - 2e-27 96.9 15.1 2.6e-27 96.5 10.5 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|313125175|ref|YP_004035439.1| - 1.1e-18 68.0 0.0 2.3e-18 66.9 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313125175|ref|YP_004035439.1| - 2.6e-14 52.7 0.1 9.4e-14 50.9 0.1 2.0 1 0 0 1 1 1 1 Amidohydrolase DHOase PF12890.2 gi|313125175|ref|YP_004035439.1| - 0.0034 17.0 0.1 0.011 15.3 0.1 1.9 1 1 0 1 1 1 1 Dihydro-orotase-like Amidohydro_3 PF07969.6 gi|313125175|ref|YP_004035439.1| - 0.042 13.0 19.0 1.2 8.2 0.1 3.1 2 1 0 2 2 2 0 Amidohydrolase family BPL_LplA_LipB PF03099.14 gi|313125176|ref|YP_004035440.1| - 3.6e-08 33.4 0.0 5.5e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.17 gi|313125177|ref|YP_004035441.1| - 0.00017 21.5 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M23 Peptidase_M15_4 PF13539.1 gi|313125177|ref|YP_004035441.1| - 0.065 13.6 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase 4HBT PF03061.17 gi|313125178|ref|YP_004035442.1| - 2.5e-12 46.7 0.2 4.1e-12 46.0 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|313125178|ref|YP_004035442.1| - 4.7e-08 33.0 0.0 5.8e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|313125178|ref|YP_004035442.1| - 0.00073 19.3 0.2 0.00094 18.9 0.1 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Docking PF08990.6 gi|313125178|ref|YP_004035442.1| - 0.095 11.9 0.2 0.22 10.8 0.1 1.6 1 0 0 1 1 1 0 Erythronolide synthase docking Isochorismatase PF00857.15 gi|313125179|ref|YP_004035443.1| - 1.9e-50 171.1 0.6 2.2e-50 171.0 0.4 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_MA_2 PF13485.1 gi|313125180|ref|YP_004035444.1| - 0.00011 22.2 0.1 0.00063 19.7 0.0 2.4 2 0 0 2 2 2 1 Peptidase MA superfamily Peptidase_MA_2 PF13485.1 gi|313125181|ref|YP_004035445.1| - 4.8e-07 29.8 0.3 5.1e-06 26.5 0.0 2.7 2 1 0 2 2 2 1 Peptidase MA superfamily DUF955 PF06114.8 gi|313125181|ref|YP_004035445.1| - 0.025 14.2 0.0 0.071 12.8 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_M76 PF09768.4 gi|313125181|ref|YP_004035445.1| - 0.029 13.8 0.0 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family DUF4157 PF13699.1 gi|313125181|ref|YP_004035445.1| - 0.066 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) SprT-like PF10263.4 gi|313125181|ref|YP_004035445.1| - 0.12 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 SprT-like family PLRV_ORF5 PF01690.12 gi|313125182|ref|YP_004035446.1| - 0.0023 17.1 6.5 0.0028 16.8 4.5 1.1 1 0 0 1 1 1 1 Potato leaf roll virus readthrough protein TALPID3 PF15324.1 gi|313125182|ref|YP_004035446.1| - 0.43 7.8 8.7 0.49 7.6 6.1 1.0 1 0 0 1 1 1 0 Hedgehog signalling target DUF1180 PF06679.7 gi|313125182|ref|YP_004035446.1| - 1.5 8.6 10.1 3.2 7.6 7.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) QRPTase_C PF01729.14 gi|313125183|ref|YP_004035447.1| - 6.9e-18 64.7 0.0 9.8e-18 64.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|313125183|ref|YP_004035447.1| - 0.00026 20.7 0.0 0.00096 18.9 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain AMMECR1 PF01871.12 gi|313125184|ref|YP_004035448.1| - 1.1e-48 164.5 0.0 1.3e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 E1-E2_ATPase PF00122.15 gi|313125185|ref|YP_004035449.1| - 1.4e-53 181.3 0.1 2.8e-53 180.3 0.1 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|313125185|ref|YP_004035449.1| - 2.1e-44 152.4 6.8 9.9e-44 150.3 3.5 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|313125185|ref|YP_004035449.1| - 3.8e-23 81.3 0.2 1.1e-10 41.5 0.0 3.8 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.2 gi|313125185|ref|YP_004035449.1| - 7.7e-15 55.5 0.2 3e-14 53.6 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|313125185|ref|YP_004035449.1| - 0.00083 19.0 0.4 0.0018 17.9 0.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase AHS1 PF02682.11 gi|313125185|ref|YP_004035449.1| - 0.061 12.7 0.0 3.4 7.0 0.0 2.6 1 1 1 2 2 2 0 Allophanate hydrolase subunit 1 Zn-ribbon_8 PF09723.5 gi|313125185|ref|YP_004035449.1| - 0.22 11.4 2.0 18 5.4 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Peptidase_M10 PF00413.19 gi|313125186|ref|YP_004035450.1| - 4.9e-09 36.0 0.1 1.3e-05 24.9 0.0 2.2 1 1 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.1 gi|313125186|ref|YP_004035450.1| - 1.8e-05 25.2 0.0 0.0018 18.7 0.0 2.4 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|313125186|ref|YP_004035450.1| - 0.00015 21.8 0.1 0.00063 19.7 0.0 1.9 2 0 0 2 2 2 1 Metallo-peptidase family M12 Reprolysin_2 PF13574.1 gi|313125186|ref|YP_004035450.1| - 0.0022 18.0 0.0 0.0074 16.3 0.0 1.7 1 1 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|313125186|ref|YP_004035450.1| - 0.023 14.2 0.0 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|313125186|ref|YP_004035450.1| - 0.031 13.6 0.0 0.067 12.5 0.0 1.5 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M43 PF05572.8 gi|313125186|ref|YP_004035450.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M91 PF14891.1 gi|313125186|ref|YP_004035450.1| - 0.088 12.8 0.0 2.9 7.9 0.0 2.3 2 0 0 2 2 2 0 Effector protein Peptidase_M57 PF12388.3 gi|313125186|ref|YP_004035450.1| - 0.13 11.5 0.0 2.2 7.5 0.0 2.1 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Reprolysin PF01421.14 gi|313125186|ref|YP_004035450.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Ank_2 PF12796.2 gi|313125187|ref|YP_004035451.1| - 9e-35 118.8 0.0 5.3e-18 65.1 0.0 2.5 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank_4 PF13637.1 gi|313125187|ref|YP_004035451.1| - 1.1e-25 89.5 0.1 5.4e-13 49.0 0.0 4.1 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank PF00023.25 gi|313125187|ref|YP_004035451.1| - 8.1e-22 75.8 0.0 2.7e-09 36.3 0.0 3.9 4 0 0 4 4 4 3 Ankyrin repeat Ank_5 PF13857.1 gi|313125187|ref|YP_004035451.1| - 8.7e-19 67.1 0.1 7.2e-11 41.9 0.0 3.1 2 1 1 3 3 3 2 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|313125187|ref|YP_004035451.1| - 1.7e-16 58.6 0.0 4.6e-05 23.2 0.0 4.1 4 0 0 4 4 4 3 Ankyrin repeat DUF222 PF02720.12 gi|313125187|ref|YP_004035451.1| - 0.0091 15.1 0.3 0.014 14.5 0.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF222) DUF4157 PF13699.1 gi|313125188|ref|YP_004035452.1| - 5.7e-30 103.2 1.0 9.6e-30 102.5 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) GH-E PF14410.1 gi|313125188|ref|YP_004035452.1| - 1.4e-25 89.2 3.7 1.4e-25 89.2 2.6 1.8 2 0 0 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues SHOCT PF09851.4 gi|313125188|ref|YP_004035452.1| - 0.0064 15.9 0.1 0.016 14.7 0.1 1.7 1 0 0 1 1 1 1 Short C-terminal domain DUF4520 PF15016.1 gi|313125190|ref|YP_004035454.1| - 0.047 13.2 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4520) Cupredoxin_1 PF13473.1 gi|313125190|ref|YP_004035454.1| - 0.055 13.3 0.1 0.31 10.9 0.0 2.0 1 1 1 2 2 2 0 Cupredoxin-like domain PIN_4 PF13638.1 gi|313125191|ref|YP_004035455.1| - 0.063 13.3 0.0 0.09 12.8 0.0 1.3 1 0 0 1 1 1 0 PIN domain PSK_trans_fac PF07704.6 gi|313125192|ref|YP_004035456.1| - 0.00087 19.9 1.7 0.0024 18.5 1.2 1.8 1 1 0 1 1 1 1 Rv0623-like transcription factor Lipase_chap PF03280.9 gi|313125192|ref|YP_004035456.1| - 0.023 14.2 1.1 0.026 14.0 0.7 1.2 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein B PF02216.11 gi|313125195|ref|YP_004035459.1| - 0.16 11.7 0.5 0.23 11.2 0.3 1.5 1 1 0 1 1 1 0 B domain Ank_2 PF12796.2 gi|313125197|ref|YP_004035461.1| - 3.4e-31 107.4 0.1 1.3e-15 57.4 0.1 2.5 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank PF00023.25 gi|313125197|ref|YP_004035461.1| - 2e-23 80.9 0.5 6.3e-07 28.9 0.0 4.3 5 0 0 5 5 5 3 Ankyrin repeat Ank_4 PF13637.1 gi|313125197|ref|YP_004035461.1| - 1.4e-20 73.2 0.0 2.3e-08 34.3 0.1 4.1 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank_5 PF13857.1 gi|313125197|ref|YP_004035461.1| - 3.3e-20 71.6 0.1 2.4e-08 33.9 0.2 3.2 2 2 1 3 3 3 2 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|313125197|ref|YP_004035461.1| - 4.3e-18 63.6 0.0 6.4e-05 22.8 0.0 4.5 5 0 0 5 5 5 3 Ankyrin repeat Usp PF00582.21 gi|313125197|ref|YP_004035461.1| - 0.12 12.5 0.1 0.18 11.9 0.1 1.5 1 1 0 1 1 1 0 Universal stress protein family DUF4157 PF13699.1 gi|313125198|ref|YP_004035462.1| - 7.1e-29 99.7 1.4 2e-28 98.3 1.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) GH-E PF14410.1 gi|313125198|ref|YP_004035462.1| - 1.4e-20 73.1 2.9 1.7e-20 72.9 0.1 2.4 2 0 0 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues HopW1-1 PF15457.1 gi|313125199|ref|YP_004035463.1| - 0.024 13.7 0.0 0.029 13.4 0.0 1.0 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA YpzI PF14140.1 gi|313125199|ref|YP_004035463.1| - 0.055 12.9 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 YpzI-like protein DUF4404 PF14357.1 gi|313125200|ref|YP_004035464.1| - 0.021 15.2 2.4 0.1 13.0 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Copper-bind PF00127.15 gi|313125201|ref|YP_004035465.1| - 6.3e-13 48.7 0.3 1.3e-12 47.8 0.2 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Spore_YhcN_YlaJ PF09580.5 gi|313125201|ref|YP_004035465.1| - 0.024 14.7 0.5 0.046 13.8 0.3 1.4 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) TAT_signal PF10518.4 gi|313125201|ref|YP_004035465.1| - 0.035 14.1 3.4 0.083 12.9 2.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NOA36 PF06524.7 gi|313125201|ref|YP_004035465.1| - 0.77 8.9 3.8 1.1 8.5 2.6 1.2 1 0 0 1 1 1 0 NOA36 protein BAF1_ABF1 PF04684.8 gi|313125201|ref|YP_004035465.1| - 9.2 4.9 11.0 14 4.4 7.6 1.2 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor Beta-Casp PF10996.3 gi|313125202|ref|YP_004035466.1| - 2.6e-21 75.8 0.0 6.4e-21 74.5 0.0 1.6 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|313125202|ref|YP_004035466.1| - 2.7e-15 56.5 3.3 7.9e-15 55.0 0.7 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|313125202|ref|YP_004035466.1| - 2.3e-12 46.4 0.0 4.9e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|313125202|ref|YP_004035466.1| - 1.6e-10 40.8 0.0 3.3e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313125202|ref|YP_004035466.1| - 0.022 14.4 0.2 0.092 12.4 0.1 2.1 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Rhodanese PF00581.15 gi|313125202|ref|YP_004035466.1| - 0.031 14.6 0.0 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 Rhodanese-like domain UPF0118 PF01594.11 gi|313125203|ref|YP_004035467.1| - 5.4e-28 97.9 27.2 6.7e-28 97.6 18.9 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 CN_hydrolase PF00795.17 gi|313125204|ref|YP_004035468.1| - 1.8e-34 118.7 0.0 2.2e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Cecropin PF00272.14 gi|313125204|ref|YP_004035468.1| - 0.19 11.3 1.0 0.36 10.4 0.7 1.4 1 0 0 1 1 1 0 Cecropin family FecCD PF01032.13 gi|313125205|ref|YP_004035469.1| - 1.6e-88 296.5 36.1 3.7e-88 295.3 25.0 1.5 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|313125206|ref|YP_004035470.1| - 4.2e-32 111.2 0.0 7.1e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125206|ref|YP_004035470.1| - 3.6e-13 50.1 0.2 7.9e-07 29.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313125206|ref|YP_004035470.1| - 8.4e-11 41.5 0.4 8.7e-09 34.9 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313125206|ref|YP_004035470.1| - 1.5e-07 30.8 0.0 3.4e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|313125206|ref|YP_004035470.1| - 2e-07 29.9 0.0 0.00086 18.0 0.0 2.5 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|313125206|ref|YP_004035470.1| - 4.1e-06 26.1 0.0 0.0046 16.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|313125206|ref|YP_004035470.1| - 5.9e-06 26.7 0.0 7.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313125206|ref|YP_004035470.1| - 1e-05 25.0 0.9 4.4e-05 22.9 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313125206|ref|YP_004035470.1| - 1.3e-05 25.3 3.2 5e-05 23.3 2.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|313125206|ref|YP_004035470.1| - 3.5e-05 24.5 0.1 9.5e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313125206|ref|YP_004035470.1| - 6.3e-05 23.1 1.2 0.00033 20.8 0.8 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313125206|ref|YP_004035470.1| - 0.00019 21.3 0.3 0.00046 20.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313125206|ref|YP_004035470.1| - 0.00026 20.2 0.1 0.0006 19.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|313125206|ref|YP_004035470.1| - 0.00029 20.7 0.0 0.001 18.9 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|313125206|ref|YP_004035470.1| - 0.0007 19.9 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|313125206|ref|YP_004035470.1| - 0.0021 17.7 0.1 0.007 16.0 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase HD PF01966.17 gi|313125206|ref|YP_004035470.1| - 0.0023 17.9 0.1 0.0068 16.4 0.0 1.7 2 0 0 2 2 1 1 HD domain NACHT PF05729.7 gi|313125206|ref|YP_004035470.1| - 0.0026 17.4 0.1 0.0057 16.3 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_14 PF13173.1 gi|313125206|ref|YP_004035470.1| - 0.0026 17.6 0.0 0.0099 15.7 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|313125206|ref|YP_004035470.1| - 0.0052 16.2 0.2 0.018 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_28 PF13521.1 gi|313125206|ref|YP_004035470.1| - 0.0052 16.7 0.1 0.014 15.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|313125206|ref|YP_004035470.1| - 0.0081 15.2 0.1 0.025 13.6 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|313125206|ref|YP_004035470.1| - 0.0091 15.7 0.0 0.03 14.0 0.0 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|313125206|ref|YP_004035470.1| - 0.012 15.3 0.0 0.022 14.4 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|313125206|ref|YP_004035470.1| - 0.013 14.6 0.0 0.14 11.2 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF87 PF01935.12 gi|313125206|ref|YP_004035470.1| - 0.019 14.7 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 Rad17 PF03215.10 gi|313125206|ref|YP_004035470.1| - 0.021 13.5 0.0 0.03 13.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|313125206|ref|YP_004035470.1| - 0.021 14.3 0.1 0.063 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|313125206|ref|YP_004035470.1| - 0.022 14.9 0.1 0.051 13.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.7 gi|313125206|ref|YP_004035470.1| - 0.023 14.0 0.0 0.051 12.8 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal cobW PF02492.14 gi|313125206|ref|YP_004035470.1| - 0.028 13.8 0.5 0.11 11.9 0.1 1.9 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|313125206|ref|YP_004035470.1| - 0.03 13.2 0.0 0.052 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|313125206|ref|YP_004035470.1| - 0.031 14.0 0.2 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|313125206|ref|YP_004035470.1| - 0.032 14.3 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.12 gi|313125206|ref|YP_004035470.1| - 0.039 13.5 0.1 0.37 10.3 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.1 gi|313125206|ref|YP_004035470.1| - 0.045 13.6 0.0 0.65 9.9 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|313125206|ref|YP_004035470.1| - 0.048 12.4 0.0 0.65 8.7 0.0 2.0 2 0 0 2 2 2 0 ArgK protein HD_4 PF13328.1 gi|313125206|ref|YP_004035470.1| - 0.059 13.0 0.3 0.11 12.2 0.2 1.5 1 0 0 1 1 1 0 HD domain DUF2813 PF11398.3 gi|313125206|ref|YP_004035470.1| - 0.06 12.4 0.0 0.093 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) UPF0079 PF02367.12 gi|313125206|ref|YP_004035470.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|313125206|ref|YP_004035470.1| - 0.092 12.1 0.2 0.18 11.2 0.1 1.8 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|313125206|ref|YP_004035470.1| - 0.1 12.2 0.2 0.56 9.8 0.0 2.1 2 1 0 2 2 2 0 NTPase Miro PF08477.8 gi|313125206|ref|YP_004035470.1| - 0.12 12.8 0.0 0.9 10.0 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_16 PF13191.1 gi|313125208|ref|YP_004035472.1| - 3.1e-12 46.8 2.6 1.8e-11 44.4 0.0 3.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313125208|ref|YP_004035472.1| - 6.6e-09 35.9 0.0 2.1e-08 34.3 0.0 1.8 1 1 1 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|313125208|ref|YP_004035472.1| - 0.00047 20.2 0.0 0.0012 18.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_20 PF12840.2 gi|313125208|ref|YP_004035472.1| - 0.0013 18.4 4.7 0.0016 18.1 0.2 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain NB-ARC PF00931.17 gi|313125208|ref|YP_004035472.1| - 0.0041 16.0 0.0 0.049 12.4 0.0 2.0 1 1 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.1 gi|313125208|ref|YP_004035472.1| - 0.0059 16.3 2.6 0.071 12.8 0.0 3.2 4 0 0 4 4 4 1 Part of AAA domain HTH_23 PF13384.1 gi|313125208|ref|YP_004035472.1| - 0.0063 16.1 0.2 0.017 14.7 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|313125208|ref|YP_004035472.1| - 0.0089 15.5 0.1 0.033 13.7 0.1 2.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|313125208|ref|YP_004035472.1| - 0.023 14.4 0.2 0.096 12.4 0.0 2.2 2 0 0 2 2 2 0 MarR family RNA_helicase PF00910.17 gi|313125208|ref|YP_004035472.1| - 0.023 14.8 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|313125208|ref|YP_004035472.1| - 0.025 14.0 0.0 0.099 12.1 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain HTH_29 PF13551.1 gi|313125208|ref|YP_004035472.1| - 0.032 14.3 0.9 0.5 10.5 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix AAA_33 PF13671.1 gi|313125208|ref|YP_004035472.1| - 0.046 13.5 3.5 0.058 13.2 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.1 gi|313125208|ref|YP_004035472.1| - 0.077 12.5 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|313125208|ref|YP_004035472.1| - 0.092 12.9 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_24 PF13412.1 gi|313125208|ref|YP_004035472.1| - 0.11 11.9 0.0 0.48 9.8 0.0 2.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AAA_32 PF13654.1 gi|313125208|ref|YP_004035472.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|313125208|ref|YP_004035472.1| - 0.14 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase HTH_40 PF14493.1 gi|313125208|ref|YP_004035472.1| - 0.17 12.1 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2075 PF09848.4 gi|313125208|ref|YP_004035472.1| - 0.17 10.7 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RTX PF02382.10 gi|313125209|ref|YP_004035473.1| - 0.091 11.0 0.9 0.12 10.5 0.7 1.1 1 0 0 1 1 1 0 RTX N-terminal domain FGGY_N PF00370.16 gi|313125210|ref|YP_004035474.1| - 1.1e-77 260.7 0.0 1.4e-77 260.3 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|313125210|ref|YP_004035474.1| - 5.4e-61 205.6 0.7 8.7e-61 204.9 0.5 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|313125210|ref|YP_004035474.1| - 4.6e-05 22.8 0.1 0.0023 17.2 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Pyr_redox_2 PF07992.9 gi|313125211|ref|YP_004035475.1| - 2.9e-29 102.3 3.3 8.2e-14 51.9 0.0 3.8 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313125211|ref|YP_004035475.1| - 6e-23 81.0 1.4 1.7e-18 66.8 0.2 4.1 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|313125211|ref|YP_004035475.1| - 1.6e-09 37.7 0.0 6e-09 35.9 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|313125211|ref|YP_004035475.1| - 6e-08 31.9 3.2 0.19 10.6 0.4 4.2 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313125211|ref|YP_004035475.1| - 1.9e-07 30.9 1.5 0.0027 17.6 0.0 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313125211|ref|YP_004035475.1| - 3.9e-07 28.9 0.1 0.081 11.3 0.0 3.8 3 1 1 4 4 4 3 HI0933-like protein 3HCDH_N PF02737.13 gi|313125211|ref|YP_004035475.1| - 0.00022 20.9 0.2 0.00042 20.0 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|313125211|ref|YP_004035475.1| - 0.00026 21.0 0.0 0.02 14.9 0.0 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313125211|ref|YP_004035475.1| - 0.0035 16.2 9.9 0.71 8.6 0.0 4.2 2 1 1 4 4 4 2 FAD binding domain Lycopene_cycl PF05834.7 gi|313125211|ref|YP_004035475.1| - 0.0076 15.2 0.2 2.3 7.0 0.0 3.0 2 1 1 3 3 3 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|313125211|ref|YP_004035475.1| - 0.012 14.7 1.7 0.98 8.4 0.0 2.8 3 1 0 3 3 3 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|313125211|ref|YP_004035475.1| - 0.016 14.6 0.2 0.071 12.4 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|313125211|ref|YP_004035475.1| - 0.028 14.2 2.8 8.2 6.1 0.1 3.7 3 1 1 4 4 4 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|313125211|ref|YP_004035475.1| - 0.042 14.1 0.2 0.3 11.3 0.1 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding Arch_flagellin PF01917.11 gi|313125212|ref|YP_004035476.1| - 1.4e-24 86.8 1.8 1.9e-24 86.3 1.3 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin zf-FCS PF06467.9 gi|313125213|ref|YP_004035477.1| - 0.16 11.6 1.3 0.39 10.3 0.9 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Metallothio_Pro PF02069.11 gi|313125213|ref|YP_004035477.1| - 0.24 11.2 7.1 2.9 7.7 4.9 2.0 1 1 0 1 1 1 0 Prokaryotic metallothionein HTH_AsnC-type PF13404.1 gi|313125214|ref|YP_004035478.1| - 1e-16 60.1 0.7 2e-16 59.1 0.5 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|313125214|ref|YP_004035478.1| - 7.9e-16 57.1 0.0 1.2e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313125214|ref|YP_004035478.1| - 8.2e-07 28.5 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313125214|ref|YP_004035478.1| - 9e-07 28.4 0.1 1.7e-06 27.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313125214|ref|YP_004035478.1| - 2.6e-06 27.1 0.0 5.8e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313125214|ref|YP_004035478.1| - 1.4e-05 24.7 0.0 2.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313125214|ref|YP_004035478.1| - 4.2e-05 23.0 0.0 9.7e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|313125214|ref|YP_004035478.1| - 0.00013 22.0 1.4 0.00019 21.5 0.9 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain YHS PF04945.8 gi|313125214|ref|YP_004035478.1| - 0.00035 20.3 1.1 0.00059 19.6 0.7 1.4 1 0 0 1 1 1 1 YHS domain HTH_27 PF13463.1 gi|313125214|ref|YP_004035478.1| - 0.00049 20.3 0.1 0.0019 18.4 0.0 2.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|313125214|ref|YP_004035478.1| - 0.00066 18.7 0.0 0.0016 17.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-FCS PF06467.9 gi|313125214|ref|YP_004035478.1| - 0.0015 18.0 1.7 0.004 16.7 1.2 1.7 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif TrmB PF01978.14 gi|313125214|ref|YP_004035478.1| - 0.0095 15.6 0.0 0.04 13.6 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|313125214|ref|YP_004035478.1| - 0.01 15.5 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|313125214|ref|YP_004035478.1| - 0.015 15.2 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Baculo_ME53 PF06061.6 gi|313125214|ref|YP_004035478.1| - 0.019 13.9 0.9 0.56 9.1 0.0 2.7 1 1 2 3 3 3 0 Baculoviridae ME53 Ta0938 PF11494.3 gi|313125214|ref|YP_004035478.1| - 0.019 15.0 0.7 0.038 14.0 0.5 1.4 1 0 0 1 1 1 0 Ta0938 HTH_11 PF08279.7 gi|313125214|ref|YP_004035478.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain LIM PF00412.17 gi|313125214|ref|YP_004035478.1| - 0.022 14.8 1.7 0.034 14.2 1.2 1.3 1 0 0 1 1 1 0 LIM domain Nup160 PF11715.3 gi|313125214|ref|YP_004035478.1| - 0.031 12.4 0.0 0.034 12.2 0.0 1.1 1 0 0 1 1 1 0 Nucleoporin Nup120/160 Rrf2 PF02082.15 gi|313125214|ref|YP_004035478.1| - 0.034 14.2 0.0 0.21 11.6 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_1 PF00126.22 gi|313125214|ref|YP_004035478.1| - 0.041 13.6 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|313125214|ref|YP_004035478.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ATPase-cat_bd PF12156.3 gi|313125214|ref|YP_004035478.1| - 0.12 12.9 3.4 0.22 12.0 2.3 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase zf-FPG_IleRS PF06827.9 gi|313125214|ref|YP_004035478.1| - 0.13 11.9 2.7 0.3 10.7 1.8 1.6 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS HTH_28 PF13518.1 gi|313125214|ref|YP_004035478.1| - 0.15 12.0 0.0 0.4 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain zf-UDP PF14569.1 gi|313125214|ref|YP_004035478.1| - 0.16 11.6 1.8 0.24 11.1 0.4 1.8 2 0 0 2 2 2 0 Zinc-binding RING-finger CpXC PF14353.1 gi|313125214|ref|YP_004035478.1| - 2.3 8.2 5.0 8.2 6.4 0.7 2.4 1 1 1 2 2 2 0 CpXC protein DUF1510 PF07423.6 gi|313125215|ref|YP_004035479.1| - 0.00072 18.9 25.6 0.0029 17.0 1.3 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1510) HMA PF00403.21 gi|313125216|ref|YP_004035480.1| - 4.7e-18 65.0 0.7 5.2e-18 64.9 0.5 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Methyltransf_31 PF13847.1 gi|313125217|ref|YP_004035481.1| - 1.3e-19 70.2 0.0 1.4e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313125217|ref|YP_004035481.1| - 3.1e-18 66.4 0.0 4.6e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|313125217|ref|YP_004035481.1| - 1.9e-17 63.5 0.0 2.5e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|313125217|ref|YP_004035481.1| - 3.7e-16 59.4 0.0 5.3e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125217|ref|YP_004035481.1| - 3.5e-14 53.0 0.0 5e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313125217|ref|YP_004035481.1| - 5.2e-14 51.9 0.0 6.4e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|313125217|ref|YP_004035481.1| - 2.6e-11 43.5 0.5 4.5e-11 42.8 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125217|ref|YP_004035481.1| - 3.6e-11 43.0 0.0 4.7e-11 42.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125217|ref|YP_004035481.1| - 5.3e-11 42.7 0.0 7.6e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|313125217|ref|YP_004035481.1| - 2.4e-06 26.8 0.0 3.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|313125217|ref|YP_004035481.1| - 4.9e-06 26.0 0.0 1.5e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|313125217|ref|YP_004035481.1| - 0.00038 19.5 0.0 0.0006 18.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase GCD14 PF08704.5 gi|313125217|ref|YP_004035481.1| - 0.00077 19.0 0.0 0.001 18.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.14 gi|313125217|ref|YP_004035481.1| - 0.0015 18.5 0.0 0.0058 16.6 0.0 1.8 1 1 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|313125217|ref|YP_004035481.1| - 0.0075 15.3 0.0 0.0098 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|313125217|ref|YP_004035481.1| - 0.033 13.2 0.0 0.063 12.3 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase MetW PF07021.7 gi|313125217|ref|YP_004035481.1| - 0.079 12.3 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Fibrillarin PF01269.12 gi|313125217|ref|YP_004035481.1| - 0.095 11.6 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin Antibiotic_NAT PF02522.9 gi|313125217|ref|YP_004035481.1| - 0.11 11.6 0.0 0.32 10.1 0.0 1.7 1 1 1 2 2 2 0 Aminoglycoside 3-N-acetyltransferase AIM24 PF01987.12 gi|313125220|ref|YP_004035484.1| - 3.1e-45 154.2 0.2 3.5e-45 154.0 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 NIR_SIR PF01077.17 gi|313125221|ref|YP_004035485.1| - 2.1e-38 131.1 0.0 1e-26 93.2 0.0 2.5 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|313125221|ref|YP_004035485.1| - 6e-37 125.0 0.0 2.4e-18 65.4 0.0 3.1 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain NifU PF01106.12 gi|313125222|ref|YP_004035486.1| - 0.024 14.4 0.4 0.043 13.5 0.2 1.5 1 1 0 1 1 1 0 NifU-like domain CENP-B_dimeris PF09026.5 gi|313125223|ref|YP_004035487.1| - 1.6 9.0 6.6 1.5 9.1 4.6 1.1 1 0 0 1 1 1 0 Centromere protein B dimerisation domain CAF1A PF12253.3 gi|313125223|ref|YP_004035487.1| - 4.4 7.4 10.3 6 7.0 7.1 1.1 1 0 0 1 1 1 0 Chromatin assembly factor 1 subunit A Peptidase_M20 PF01546.23 gi|313125225|ref|YP_004035489.1| - 1e-28 100.1 0.3 1.3e-28 99.8 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|313125225|ref|YP_004035489.1| - 3e-05 23.7 0.0 7.5e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|313125225|ref|YP_004035489.1| - 0.00041 20.1 0.2 0.093 12.4 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M3 PF01432.15 gi|313125226|ref|YP_004035490.1| - 3.4e-70 237.3 4.3 3.4e-70 237.3 2.9 2.0 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|313125226|ref|YP_004035490.1| - 1.2e-24 86.1 6.0 1.6e-24 85.7 0.1 3.8 4 0 0 4 4 4 1 Oligopeptidase F UPF0547 PF10571.4 gi|313125228|ref|YP_004035492.1| - 0.0042 16.7 0.9 1.9 8.2 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|313125228|ref|YP_004035492.1| - 0.0051 16.5 0.6 0.0075 16.0 0.4 1.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313125228|ref|YP_004035492.1| - 0.011 14.9 1.2 1.9 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|313125228|ref|YP_004035492.1| - 0.012 15.1 0.7 4.4 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Nudix_N_2 PF14803.1 gi|313125228|ref|YP_004035492.1| - 0.021 14.5 1.0 0.13 11.9 0.7 2.0 1 1 0 1 1 1 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|313125228|ref|YP_004035492.1| - 0.043 13.5 0.9 1 9.1 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-HYPF PF07503.7 gi|313125228|ref|YP_004035492.1| - 0.11 11.9 1.6 1.2 8.6 0.1 2.2 2 0 0 2 2 2 0 HypF finger ADK_lid PF05191.9 gi|313125228|ref|YP_004035492.1| - 0.24 11.0 2.5 4.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.5 gi|313125228|ref|YP_004035492.1| - 0.65 9.9 5.0 5.6 6.9 3.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain RecR PF02132.10 gi|313125228|ref|YP_004035492.1| - 0.81 9.1 3.8 2.3 7.7 2.6 1.7 1 1 0 1 1 1 0 RecR protein zf-NADH-PPase PF09297.6 gi|313125228|ref|YP_004035492.1| - 0.82 9.2 3.1 3.6 7.1 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|313125228|ref|YP_004035492.1| - 0.84 9.4 5.8 8.8 6.2 4.0 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|313125228|ref|YP_004035492.1| - 1.1 9.0 4.6 2 8.2 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|313125228|ref|YP_004035492.1| - 5.4 7.2 6.6 13 5.9 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Peptidase_M28 PF04389.12 gi|313125229|ref|YP_004035493.1| - 1.1e-28 100.1 0.4 1.6e-28 99.6 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|313125229|ref|YP_004035493.1| - 1.3e-08 34.4 0.1 3e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|313125229|ref|YP_004035493.1| - 6.3e-05 22.5 0.6 9.9e-05 21.9 0.4 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|313125229|ref|YP_004035493.1| - 0.0018 17.1 0.2 0.0029 16.4 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase DUF1056 PF06341.6 gi|313125230|ref|YP_004035494.1| - 0.87 9.6 4.6 2.1 8.4 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) HAD_2 PF13419.1 gi|313125231|ref|YP_004035495.1| - 4.7e-13 49.7 0.2 5.9e-13 49.4 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125231|ref|YP_004035495.1| - 1.5e-10 40.5 0.0 3e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313125231|ref|YP_004035495.1| - 7e-09 36.4 0.1 1.3e-06 28.9 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|313125231|ref|YP_004035495.1| - 0.019 14.1 0.0 0.21 10.7 0.0 2.0 2 0 0 2 2 2 0 Putative Phosphatase HAD PF12710.2 gi|313125231|ref|YP_004035495.1| - 0.032 14.4 0.1 0.061 13.4 0.1 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PseudoU_synth_1 PF01416.15 gi|313125232|ref|YP_004035496.1| - 1.2e-21 77.0 0.0 2.7e-11 43.8 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase tRNA-synt_His PF13393.1 gi|313125233|ref|YP_004035497.1| - 1.2e-51 175.6 0.1 1.6e-51 175.2 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|313125233|ref|YP_004035497.1| - 5.4e-20 71.6 0.0 8.7e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|313125233|ref|YP_004035497.1| - 9.9e-14 51.0 0.1 1.9e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|313125233|ref|YP_004035497.1| - 0.11 11.7 0.0 0.25 10.5 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) PQQ_2 PF13360.1 gi|313125234|ref|YP_004035498.1| - 2.4e-25 89.3 16.2 1.3e-15 57.5 1.4 3.0 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|313125234|ref|YP_004035498.1| - 2.2e-23 81.8 26.0 1.4e-06 28.3 0.6 7.0 7 0 0 7 7 7 6 PQQ-like domain PQQ PF01011.16 gi|313125234|ref|YP_004035498.1| - 4.5e-18 63.8 8.2 3.8e-06 26.1 0.1 5.2 5 0 0 5 5 5 3 PQQ enzyme repeat EamA PF00892.15 gi|313125235|ref|YP_004035499.1| - 4.1e-25 88.2 20.0 6e-14 52.1 5.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|313125235|ref|YP_004035499.1| - 3.2e-07 30.5 27.6 0.00022 21.3 3.2 4.0 3 1 1 4 4 4 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|313125235|ref|YP_004035499.1| - 0.042 13.6 0.4 0.042 13.6 0.3 2.9 3 1 1 4 4 4 0 Uncharacterised protein family UPF0546 DUF2881 PF11087.3 gi|313125235|ref|YP_004035499.1| - 8.6 5.9 9.1 4.2 6.9 0.9 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2881) Asn_synthase PF00733.16 gi|313125236|ref|YP_004035500.1| - 0.00039 19.9 0.1 0.00097 18.6 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|313125236|ref|YP_004035500.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|313125236|ref|YP_004035500.1| - 0.06 12.7 0.1 0.14 11.4 0.0 1.5 1 1 0 1 1 1 0 ATP-binding region QueC PF06508.8 gi|313125236|ref|YP_004035500.1| - 0.079 12.2 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HHH_5 PF14520.1 gi|313125236|ref|YP_004035500.1| - 0.11 12.7 0.2 0.51 10.5 0.2 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain dsDNA_bind PF01984.15 gi|313125237|ref|YP_004035501.1| - 2.3e-28 98.3 13.4 2.6e-28 98.1 9.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF305 PF03713.8 gi|313125237|ref|YP_004035501.1| - 0.048 13.4 4.5 0.061 13.1 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF305) DUF2514 PF10721.4 gi|313125237|ref|YP_004035501.1| - 0.13 11.9 10.1 0.17 11.5 7.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2514) DUF759 PF05537.6 gi|313125237|ref|YP_004035501.1| - 0.15 10.7 3.3 0.17 10.6 2.3 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) Rotamase_2 PF13145.1 gi|313125237|ref|YP_004035501.1| - 0.21 12.2 4.5 0.27 11.8 3.1 1.3 1 0 0 1 1 1 0 PPIC-type PPIASE domain YopR_core PF09025.5 gi|313125237|ref|YP_004035501.1| - 0.24 11.3 3.7 0.3 11.0 2.4 1.3 1 1 0 1 1 1 0 YopR Core DUF4078 PF13300.1 gi|313125237|ref|YP_004035501.1| - 2.6 8.2 8.2 6.7 6.9 5.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4078) Mnd1 PF03962.10 gi|313125237|ref|YP_004035501.1| - 4.6 6.8 10.1 4.4 6.9 6.3 1.4 1 1 1 2 2 2 0 Mnd1 family Ribosomal_S19e PF01090.14 gi|313125238|ref|YP_004035502.1| - 1.7e-48 163.5 0.0 1.9e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|313125238|ref|YP_004035502.1| - 2.2e-05 23.7 0.5 0.0011 18.3 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|313125238|ref|YP_004035502.1| - 0.00047 19.8 0.1 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|313125238|ref|YP_004035502.1| - 0.013 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.1 gi|313125238|ref|YP_004035502.1| - 0.038 14.0 0.1 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain MotA_activ PF09114.5 gi|313125238|ref|YP_004035502.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain UPF0104 PF03706.8 gi|313125239|ref|YP_004035503.1| - 1.9e-38 132.4 30.5 2.5e-38 132.0 21.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Peptidase_U4 PF03419.8 gi|313125239|ref|YP_004035503.1| - 0.9 8.5 4.2 0.91 8.5 2.1 1.6 1 1 0 1 1 1 0 Sporulation factor SpoIIGA AIRS PF00586.19 gi|313125240|ref|YP_004035504.1| - 2.8e-17 62.7 5.1 3.7e-17 62.3 1.4 2.2 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|313125240|ref|YP_004035504.1| - 8.6e-09 35.5 0.0 1.4e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Peptidase_M50 PF02163.17 gi|313125241|ref|YP_004035505.1| - 3.7e-18 65.1 2.3 7.6e-17 60.8 1.3 2.5 1 1 0 1 1 1 1 Peptidase family M50 MoaE PF02391.12 gi|313125243|ref|YP_004035507.1| - 5.4e-25 87.4 0.9 8.9e-25 86.7 0.6 1.3 1 0 0 1 1 1 1 MoaE protein AA_kinase PF00696.23 gi|313125244|ref|YP_004035508.1| - 1.9e-25 89.8 4.9 2.2e-25 89.5 3.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family tRNA-synt_1f PF01921.13 gi|313125245|ref|YP_004035509.1| - 3.9e-102 341.6 0.0 5.4e-102 341.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|313125245|ref|YP_004035509.1| - 1.6e-07 30.3 0.0 4.1e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|313125245|ref|YP_004035509.1| - 0.00058 19.0 0.0 0.0048 16.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain MitoNEET_N PF10660.4 gi|313125247|ref|YP_004035511.1| - 0.0079 16.0 0.0 0.009 15.8 0.0 1.1 1 0 0 1 1 1 1 Iron-containing outer mitochondrial membrane protein N-terminus DUF1467 PF07330.7 gi|313125247|ref|YP_004035511.1| - 0.13 12.0 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) Ank_2 PF12796.2 gi|313125248|ref|YP_004035512.1| - 1.1e-36 125.0 0.0 1.5e-15 57.2 0.0 2.5 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank PF00023.25 gi|313125248|ref|YP_004035512.1| - 2.7e-22 77.3 0.0 4.5e-09 35.6 0.0 3.5 4 0 0 4 4 4 3 Ankyrin repeat Ank_4 PF13637.1 gi|313125248|ref|YP_004035512.1| - 1.7e-19 69.8 0.0 1.5e-05 25.3 0.0 4.1 2 1 2 4 4 4 4 Ankyrin repeats (many copies) Ank_5 PF13857.1 gi|313125248|ref|YP_004035512.1| - 2.1e-15 56.4 0.0 1.4e-06 28.3 0.0 3.1 2 1 1 3 3 3 3 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|313125248|ref|YP_004035512.1| - 3.7e-14 51.4 0.0 0.00052 20.0 0.0 3.5 3 0 0 3 3 3 3 Ankyrin repeat Colicin_immun PF09204.5 gi|313125249|ref|YP_004035513.1| - 3.9e-05 23.6 0.8 5.1e-05 23.2 0.5 1.3 1 0 0 1 1 1 1 Bacterial self-protective colicin-like immunity HDC PF02329.11 gi|313125249|ref|YP_004035513.1| - 0.028 13.0 0.0 0.034 12.8 0.0 1.1 1 0 0 1 1 1 0 Histidine carboxylase PI chain AMMECR1 PF01871.12 gi|313125249|ref|YP_004035513.1| - 0.063 12.4 0.0 3.5 6.7 0.0 2.1 1 1 0 2 2 2 0 AMMECR1 Peptidase_M50 PF02163.17 gi|313125250|ref|YP_004035514.1| - 1.8e-28 98.8 0.0 1.6e-27 95.7 0.0 2.6 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|313125250|ref|YP_004035514.1| - 1.1e-17 63.6 0.1 1.1e-07 31.5 0.0 3.3 2 1 1 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.1 gi|313125250|ref|YP_004035514.1| - 1.9e-09 37.1 0.4 2.7e-05 23.8 0.0 2.9 3 0 0 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.19 gi|313125250|ref|YP_004035514.1| - 4.4e-05 23.5 0.5 0.00054 20.0 0.0 2.9 2 1 1 3 3 3 1 PDZ domain (Also known as DHR or GLGF) PadR PF03551.9 gi|313125251|ref|YP_004035515.1| - 8.5e-23 79.9 0.1 1.3e-22 79.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313125251|ref|YP_004035515.1| - 0.081 13.2 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Chlor_dismutase PF06778.7 gi|313125252|ref|YP_004035516.1| - 2.2e-56 190.6 0.1 3.9e-56 189.8 0.1 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|313125252|ref|YP_004035516.1| - 1.3e-07 31.4 0.6 1.3e-07 31.4 0.4 4.2 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase SHOCT PF09851.4 gi|313125253|ref|YP_004035517.1| - 2.7e-08 32.9 3.7 4.1e-08 32.4 2.6 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|313125253|ref|YP_004035517.1| - 0.00096 18.8 1.9 0.00096 18.8 1.3 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|313125253|ref|YP_004035517.1| - 0.011 15.5 0.6 0.017 14.9 0.4 1.3 1 0 0 1 1 1 0 Gas vesicle protein G GHMP_kinases_N PF00288.21 gi|313125254|ref|YP_004035518.1| - 1.7e-11 44.0 0.7 3.6e-11 42.9 0.5 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain SHOCT PF09851.4 gi|313125255|ref|YP_004035519.1| - 1.2e-08 34.1 3.0 1.2e-08 34.1 2.1 1.6 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.6 gi|313125255|ref|YP_004035519.1| - 0.00027 20.6 6.7 0.00046 19.8 4.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|313125255|ref|YP_004035519.1| - 0.0046 16.7 1.0 0.0068 16.1 0.7 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF883 PF05957.8 gi|313125255|ref|YP_004035519.1| - 0.0067 16.7 2.1 0.16 12.4 0.0 2.7 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF883) DUF3040 PF11239.3 gi|313125255|ref|YP_004035519.1| - 0.78 9.8 2.9 0.34 11.0 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF4281 PF14108.1 gi|313125256|ref|YP_004035520.1| - 0.039 14.0 0.0 0.044 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4281) Aldo_ket_red PF00248.16 gi|313125257|ref|YP_004035521.1| - 6.6e-48 162.9 0.0 7.6e-48 162.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Hexapep PF00132.19 gi|313125258|ref|YP_004035522.1| - 2.3e-09 36.3 4.1 0.00014 21.1 0.5 3.4 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313125258|ref|YP_004035522.1| - 0.00047 19.6 6.7 0.018 14.5 0.1 3.4 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase zinc_ribbon_2 PF13240.1 gi|313125259|ref|YP_004035523.1| - 0.00083 18.7 5.1 0.0019 17.6 3.6 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|313125259|ref|YP_004035523.1| - 0.001 18.8 1.3 0.0014 18.4 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313125259|ref|YP_004035523.1| - 0.0014 17.7 3.1 0.002 17.2 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313125259|ref|YP_004035523.1| - 0.019 14.6 0.7 0.027 14.1 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|313125259|ref|YP_004035523.1| - 0.039 13.4 2.1 0.079 12.4 1.5 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF486 PF04342.7 gi|313125260|ref|YP_004035524.1| - 0.0061 16.6 1.2 0.0066 16.4 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF486 Cation_ATPase_C PF00689.16 gi|313125260|ref|YP_004035524.1| - 0.054 13.0 0.3 0.057 12.9 0.2 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF70 PF01901.11 gi|313125260|ref|YP_004035524.1| - 0.058 12.4 0.4 0.068 12.2 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 RskA PF10099.4 gi|313125262|ref|YP_004035526.1| - 0.094 12.4 0.2 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Anti-sigma-K factor rskA TAT_signal PF10518.4 gi|313125262|ref|YP_004035526.1| - 0.2 11.7 4.7 0.45 10.6 3.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NAD_synthase PF02540.12 gi|313125263|ref|YP_004035527.1| - 2.7e-83 278.5 0.0 3.2e-83 278.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|313125263|ref|YP_004035527.1| - 2.9e-07 29.3 0.1 0.00011 20.8 0.0 2.2 1 1 1 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|313125263|ref|YP_004035527.1| - 4.1e-05 23.1 0.0 5.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|313125263|ref|YP_004035527.1| - 0.0013 18.1 0.0 0.0061 15.8 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ECH PF00378.15 gi|313125264|ref|YP_004035528.1| - 2.5e-47 161.0 0.1 2.9e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF457 PF04307.9 gi|313125266|ref|YP_004035530.1| - 0.00027 20.2 12.9 0.00058 19.2 8.9 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4231 PF14015.1 gi|313125266|ref|YP_004035530.1| - 2.9 7.9 6.0 0.54 10.2 0.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF2238 PF09997.4 gi|313125267|ref|YP_004035531.1| - 0.004 16.5 4.7 0.037 13.4 3.3 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) PqqD PF05402.7 gi|313125267|ref|YP_004035531.1| - 0.074 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) DUF3154 PF11351.3 gi|313125267|ref|YP_004035531.1| - 0.48 10.1 5.7 0.12 12.1 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) DUF4234 PF14018.1 gi|313125267|ref|YP_004035531.1| - 0.64 9.7 4.4 2.5 7.9 2.6 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) TrkA_N PF02254.13 gi|313125268|ref|YP_004035532.1| - 1e-26 93.2 0.2 1.5e-26 92.6 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|313125268|ref|YP_004035532.1| - 7.2e-12 44.7 0.3 1.7e-11 43.5 0.2 1.7 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|313125268|ref|YP_004035532.1| - 6.1e-10 38.7 0.2 1.8e-09 37.2 0.2 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|313125268|ref|YP_004035532.1| - 2.7e-07 30.7 0.2 4e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|313125268|ref|YP_004035532.1| - 6.4e-07 28.9 0.1 9.9e-07 28.3 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|313125268|ref|YP_004035532.1| - 2.9e-06 26.7 0.1 4.5e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|313125268|ref|YP_004035532.1| - 2.3e-05 24.1 0.2 3.8e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313125268|ref|YP_004035532.1| - 3.1e-05 24.0 0.2 4.4e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|313125268|ref|YP_004035532.1| - 7.8e-05 22.5 0.1 0.00019 21.3 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|313125268|ref|YP_004035532.1| - 8e-05 21.7 0.3 0.00011 21.3 0.2 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase DAO PF01266.19 gi|313125268|ref|YP_004035532.1| - 0.00013 21.0 0.1 0.00021 20.3 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|313125268|ref|YP_004035532.1| - 0.00024 20.2 0.2 0.00031 19.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|313125268|ref|YP_004035532.1| - 0.00028 20.1 0.1 0.00045 19.4 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|313125268|ref|YP_004035532.1| - 0.00047 20.5 0.7 0.0012 19.2 0.5 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|313125268|ref|YP_004035532.1| - 0.00069 19.3 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.16 gi|313125268|ref|YP_004035532.1| - 0.0024 17.7 0.1 0.004 17.0 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.1 gi|313125268|ref|YP_004035532.1| - 0.0032 17.7 0.0 0.0046 17.2 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|313125268|ref|YP_004035532.1| - 0.0055 16.2 0.5 0.01 15.3 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.12 gi|313125268|ref|YP_004035532.1| - 0.0057 17.0 0.1 0.01 16.2 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.8 gi|313125268|ref|YP_004035532.1| - 0.0063 15.8 0.1 0.0084 15.3 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family Pyr_redox_2 PF07992.9 gi|313125268|ref|YP_004035532.1| - 0.0096 15.8 0.6 0.011 15.6 0.4 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.17 gi|313125268|ref|YP_004035532.1| - 0.036 14.5 0.1 0.054 14.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ThiF PF00899.16 gi|313125268|ref|YP_004035532.1| - 0.048 13.4 0.0 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 ThiF family CPSase_L_chain PF00289.17 gi|313125268|ref|YP_004035532.1| - 0.051 13.6 0.1 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain B12-binding PF02310.14 gi|313125268|ref|YP_004035532.1| - 0.056 13.3 0.3 0.5 10.2 0.1 2.3 2 1 0 2 2 2 0 B12 binding domain FAD_binding_2 PF00890.19 gi|313125268|ref|YP_004035532.1| - 0.067 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DUF364 PF04016.7 gi|313125268|ref|YP_004035532.1| - 0.078 12.2 0.2 0.14 11.4 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF364) ADH_zinc_N PF00107.21 gi|313125268|ref|YP_004035532.1| - 0.11 12.0 1.3 6.8 6.2 0.1 2.5 2 1 1 3 3 2 0 Zinc-binding dehydrogenase DUF2118 PF09891.4 gi|313125268|ref|YP_004035532.1| - 0.14 11.8 3.9 2 8.0 0.5 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2118) DHDPS PF00701.17 gi|313125269|ref|YP_004035533.1| - 3e-63 213.1 0.0 3.3e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family TOBE PF03459.12 gi|313125270|ref|YP_004035534.1| - 4.2e-10 39.5 10.4 7.1e-10 38.8 1.1 2.6 2 0 0 2 2 2 2 TOBE domain HTH_1 PF00126.22 gi|313125270|ref|YP_004035534.1| - 1.4e-09 37.5 1.5 3.3e-09 36.3 1.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.5 gi|313125270|ref|YP_004035534.1| - 0.00086 19.2 1.1 0.00086 19.2 0.8 2.6 1 1 1 2 2 2 1 TOBE domain HTH_24 PF13412.1 gi|313125270|ref|YP_004035534.1| - 0.09 12.1 0.2 0.22 10.9 0.2 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313125270|ref|YP_004035534.1| - 0.84 9.2 5.2 1.2 8.7 2.3 2.4 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain FLgD_tudor PF13861.1 gi|313125270|ref|YP_004035534.1| - 1.1 9.2 3.8 1.1 9.3 1.2 2.1 2 0 0 2 2 2 0 FlgD Tudor-like domain ABC_tran PF00005.22 gi|313125271|ref|YP_004035535.1| - 1.6e-32 112.6 0.0 2.2e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125271|ref|YP_004035535.1| - 1.9e-09 37.9 0.0 0.0018 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|313125271|ref|YP_004035535.1| - 2.4e-07 30.3 0.7 5.5e-05 22.8 0.2 2.8 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|313125271|ref|YP_004035535.1| - 1.5e-05 25.0 1.1 4.5e-05 23.5 0.8 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|313125271|ref|YP_004035535.1| - 9e-05 21.9 0.3 0.00017 21.0 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313125271|ref|YP_004035535.1| - 0.00028 21.7 0.1 0.00056 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313125271|ref|YP_004035535.1| - 0.00031 20.0 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|313125271|ref|YP_004035535.1| - 0.00063 19.2 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|313125271|ref|YP_004035535.1| - 0.00079 19.3 0.3 0.0013 18.5 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313125271|ref|YP_004035535.1| - 0.00088 19.5 0.0 0.0039 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313125271|ref|YP_004035535.1| - 0.00099 18.5 0.1 0.0025 17.2 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|313125271|ref|YP_004035535.1| - 0.001 18.9 0.1 0.019 14.8 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|313125271|ref|YP_004035535.1| - 0.0015 18.2 0.0 0.0034 17.0 0.0 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|313125271|ref|YP_004035535.1| - 0.0023 18.0 0.1 0.0035 17.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|313125271|ref|YP_004035535.1| - 0.0073 16.2 0.3 0.02 14.8 0.1 1.9 2 1 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|313125271|ref|YP_004035535.1| - 0.008 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 NACHT domain Miro PF08477.8 gi|313125271|ref|YP_004035535.1| - 0.016 15.6 0.0 0.033 14.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|313125271|ref|YP_004035535.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|313125271|ref|YP_004035535.1| - 0.021 14.3 0.3 0.06 12.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|313125271|ref|YP_004035535.1| - 0.027 13.9 0.0 0.056 12.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|313125271|ref|YP_004035535.1| - 0.029 13.2 0.0 0.045 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|313125271|ref|YP_004035535.1| - 0.041 14.0 0.0 0.39 10.9 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|313125271|ref|YP_004035535.1| - 0.063 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|313125271|ref|YP_004035535.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|313125271|ref|YP_004035535.1| - 0.092 11.3 0.0 3.8 5.9 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|313125271|ref|YP_004035535.1| - 0.093 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_23 PF13476.1 gi|313125271|ref|YP_004035535.1| - 0.1 12.9 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|313125271|ref|YP_004035535.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 NTPase BPD_transp_1 PF00528.17 gi|313125272|ref|YP_004035536.1| - 6.6e-13 48.5 7.0 1.2e-12 47.7 4.8 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PIN_3 PF13470.1 gi|313125273|ref|YP_004035537.1| - 0.0038 17.8 1.0 0.0088 16.7 0.7 1.6 1 1 0 1 1 1 1 PIN domain Ham1p_like PF01725.11 gi|313125274|ref|YP_004035538.1| - 3.3e-44 150.5 0.0 8.9e-44 149.1 0.0 1.6 1 1 0 1 1 1 1 Ham1 family Pheromone PF08015.6 gi|313125275|ref|YP_004035539.1| - 0.12 13.2 0.0 0.59 10.9 0.0 1.9 2 0 0 2 2 2 0 Fungal mating-type pheromone Peptidase_M22 PF00814.20 gi|313125276|ref|YP_004035540.1| - 2.9e-73 246.6 0.0 3.5e-73 246.3 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|313125276|ref|YP_004035540.1| - 1.4e-05 24.9 1.4 0.0013 18.5 0.1 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|313125276|ref|YP_004035540.1| - 0.00074 18.6 0.1 0.0051 15.8 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.17 gi|313125276|ref|YP_004035540.1| - 0.0048 16.2 0.0 0.011 15.0 0.0 1.5 1 1 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|313125276|ref|YP_004035540.1| - 0.076 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Ribosomal_S24e PF01282.14 gi|313125277|ref|YP_004035541.1| - 1.1e-27 95.6 0.2 1.4e-27 95.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|313125278|ref|YP_004035542.1| - 3e-40 136.3 0.1 3.6e-40 136.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) eIF-5a PF01287.15 gi|313125278|ref|YP_004035542.1| - 0.063 13.2 2.0 0.37 10.7 0.1 2.5 2 1 1 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold DUF99 PF01949.11 gi|313125278|ref|YP_004035542.1| - 0.12 11.4 0.0 0.57 9.2 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF99 Spt4 PF06093.8 gi|313125279|ref|YP_004035543.1| - 2.1e-14 53.1 0.1 2.5e-14 52.9 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|313125279|ref|YP_004035543.1| - 0.0012 18.6 1.5 0.0017 18.1 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|313125279|ref|YP_004035543.1| - 0.0018 17.3 2.0 0.0024 16.9 1.4 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|313125279|ref|YP_004035543.1| - 0.025 13.7 2.0 0.098 11.8 1.7 1.7 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|313125279|ref|YP_004035543.1| - 0.029 14.0 3.0 0.23 11.1 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|313125279|ref|YP_004035543.1| - 0.036 13.5 2.4 0.057 12.9 1.6 1.2 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|313125279|ref|YP_004035543.1| - 0.14 11.8 0.3 0.16 11.6 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|313125279|ref|YP_004035543.1| - 0.17 11.8 1.1 0.3 11.0 0.6 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|313125279|ref|YP_004035543.1| - 0.56 10.2 4.2 6.2 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 RNA_POL_M_15KD PF02150.11 gi|313125279|ref|YP_004035543.1| - 1.7 8.3 5.7 2.4 7.9 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit SHS2_Rpb7-N PF03876.12 gi|313125280|ref|YP_004035544.1| - 8.8e-16 57.7 0.1 1.4e-15 57.1 0.1 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|313125280|ref|YP_004035544.1| - 2.3e-13 50.0 0.4 5e-13 48.9 0.3 1.6 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.1 gi|313125280|ref|YP_004035544.1| - 0.011 15.5 0.0 1.1 9.1 0.0 2.5 1 1 0 1 1 1 0 S1 domain Fcf1 PF04900.7 gi|313125281|ref|YP_004035545.1| - 1.1e-08 35.0 0.0 1.4e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|313125281|ref|YP_004035545.1| - 9e-08 31.6 0.2 1.5e-07 30.8 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.1 gi|313125281|ref|YP_004035545.1| - 0.00024 21.2 0.0 0.00039 20.5 0.0 1.4 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|313125281|ref|YP_004035545.1| - 0.026 14.8 0.2 0.062 13.6 0.1 1.6 1 1 1 2 2 2 0 PIN domain PIN_3 PF13470.1 gi|313125281|ref|YP_004035545.1| - 0.13 12.9 2.3 0.36 11.5 1.6 1.7 1 1 0 1 1 1 0 PIN domain NAD_binding_3 PF03447.11 gi|313125281|ref|YP_004035545.1| - 0.14 12.6 1.0 7.6 6.9 0.0 2.2 1 1 1 2 2 2 0 Homoserine dehydrogenase, NAD binding domain GTP_EFTU PF00009.22 gi|313125282|ref|YP_004035546.1| - 2.9e-42 144.2 0.3 4.5e-42 143.6 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|313125282|ref|YP_004035546.1| - 2.2e-27 94.9 0.1 4.5e-27 93.9 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|313125282|ref|YP_004035546.1| - 5.3e-08 32.8 1.6 1.5e-07 31.4 1.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|313125282|ref|YP_004035546.1| - 0.00079 18.9 1.3 0.11 11.9 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|313125282|ref|YP_004035546.1| - 0.0014 18.5 0.0 0.003 17.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|313125282|ref|YP_004035546.1| - 0.015 14.5 1.5 4.1 6.6 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|313125282|ref|YP_004035546.1| - 0.049 14.1 0.0 0.18 12.3 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein TruB_C PF09142.6 gi|313125282|ref|YP_004035546.1| - 0.1 12.2 0.7 16 5.2 0.1 2.7 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal SRPRB PF09439.5 gi|313125282|ref|YP_004035546.1| - 0.12 11.5 0.0 7.9 5.6 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|313125282|ref|YP_004035546.1| - 0.28 11.0 1.3 1.2 8.9 0.0 2.6 3 1 1 4 4 4 0 Dynamin family PepSY_2 PF13670.1 gi|313125283|ref|YP_004035547.1| - 0.066 13.1 0.1 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Lactamase_B_2 PF12706.2 gi|313125287|ref|YP_004035551.1| - 3.1e-17 62.7 0.2 4.2e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|313125287|ref|YP_004035551.1| - 8.6e-06 25.5 2.4 1.6e-05 24.6 1.6 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA PF00004.24 gi|313125289|ref|YP_004035553.1| - 2.1e-40 137.9 0.0 5.2e-40 136.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|313125289|ref|YP_004035553.1| - 9.1e-10 39.4 2.0 9.5e-09 36.1 0.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|313125289|ref|YP_004035553.1| - 1.1e-06 28.3 0.0 6.5e-06 25.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|313125289|ref|YP_004035553.1| - 1.5e-06 28.3 0.2 3.2e-05 23.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|313125289|ref|YP_004035553.1| - 2.2e-06 27.9 1.0 1.7e-05 25.1 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|313125289|ref|YP_004035553.1| - 3.3e-06 27.0 0.0 1.1e-05 25.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313125289|ref|YP_004035553.1| - 3e-05 24.0 5.8 0.0021 18.0 0.0 3.9 1 1 3 4 4 4 1 AAA ATPase domain RuvB_N PF05496.7 gi|313125289|ref|YP_004035553.1| - 3.6e-05 22.9 0.1 9.5e-05 21.5 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|313125289|ref|YP_004035553.1| - 5.7e-05 23.2 2.3 0.0023 18.0 0.4 3.0 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|313125289|ref|YP_004035553.1| - 0.00015 21.7 0.0 0.00041 20.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|313125289|ref|YP_004035553.1| - 0.00071 18.5 0.0 0.0013 17.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|313125289|ref|YP_004035553.1| - 0.0013 18.6 0.0 0.0028 17.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|313125289|ref|YP_004035553.1| - 0.0014 18.0 0.8 0.019 14.3 0.0 3.1 1 1 3 4 4 4 1 AAA domain SKI PF01202.17 gi|313125289|ref|YP_004035553.1| - 0.0015 18.4 0.0 0.0046 16.8 0.0 1.9 1 0 0 1 1 1 1 Shikimate kinase TIP49 PF06068.8 gi|313125289|ref|YP_004035553.1| - 0.0016 17.1 0.0 0.0036 16.0 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus AAA_19 PF13245.1 gi|313125289|ref|YP_004035553.1| - 0.003 17.2 0.0 0.0077 15.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|313125289|ref|YP_004035553.1| - 0.0038 17.1 0.0 0.01 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|313125289|ref|YP_004035553.1| - 0.0054 16.6 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase-like family IstB_IS21 PF01695.12 gi|313125289|ref|YP_004035553.1| - 0.011 15.1 0.4 0.031 13.6 0.0 1.9 2 1 0 2 2 1 0 IstB-like ATP binding protein Sigma54_activ_2 PF14532.1 gi|313125289|ref|YP_004035553.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|313125289|ref|YP_004035553.1| - 0.012 15.9 0.1 0.065 13.5 0.0 2.5 1 1 0 2 2 2 0 ABC transporter RNA_helicase PF00910.17 gi|313125289|ref|YP_004035553.1| - 0.012 15.7 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|313125289|ref|YP_004035553.1| - 0.013 15.1 0.1 4.6 6.8 0.0 2.5 1 1 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.13 gi|313125289|ref|YP_004035553.1| - 0.019 14.5 0.0 0.76 9.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_3 PF07726.6 gi|313125289|ref|YP_004035553.1| - 0.023 14.2 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|313125289|ref|YP_004035553.1| - 0.026 14.0 0.1 0.08 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313125289|ref|YP_004035553.1| - 0.042 13.0 0.0 0.076 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|313125289|ref|YP_004035553.1| - 0.045 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|313125289|ref|YP_004035553.1| - 0.052 13.3 0.0 0.088 12.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Rad17 PF03215.10 gi|313125289|ref|YP_004035553.1| - 0.058 12.0 0.0 0.084 11.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SRP54 PF00448.17 gi|313125289|ref|YP_004035553.1| - 0.07 12.5 2.2 0.33 10.3 0.0 2.5 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|313125289|ref|YP_004035553.1| - 0.076 12.1 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KaiC PF06745.8 gi|313125289|ref|YP_004035553.1| - 1.4 8.0 4.5 1.8 7.5 0.2 2.6 2 1 1 3 3 3 0 KaiC Thiolase_N PF00108.18 gi|313125290|ref|YP_004035554.1| - 2e-80 269.5 0.5 3.2e-80 268.8 0.3 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|313125290|ref|YP_004035554.1| - 2.1e-42 143.4 0.9 2.7e-42 143.0 0.1 1.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|313125290|ref|YP_004035554.1| - 3.1e-05 23.6 0.2 8e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|313125290|ref|YP_004035554.1| - 0.016 14.8 3.8 0.38 10.4 0.1 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_7 PF02796.10 gi|313125290|ref|YP_004035554.1| - 0.11 12.3 0.0 0.51 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase TrkA_N PF02254.13 gi|313125291|ref|YP_004035555.1| - 8.1e-34 116.1 1.1 1.8e-33 114.9 0.7 1.6 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.16 gi|313125291|ref|YP_004035555.1| - 6.6e-33 113.7 43.1 8.6e-33 113.3 29.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|313125291|ref|YP_004035555.1| - 4.8e-12 45.3 1.3 6.4e-11 41.6 0.1 2.6 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|313125291|ref|YP_004035555.1| - 9.3e-10 38.6 0.1 3.5e-09 36.8 0.1 2.0 2 0 0 2 2 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|313125291|ref|YP_004035555.1| - 8.9e-07 29.0 0.3 2.1e-06 27.8 0.2 1.7 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|313125291|ref|YP_004035555.1| - 5.9e-05 23.4 3.2 0.00034 20.9 0.3 3.1 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|313125291|ref|YP_004035555.1| - 0.00046 20.5 0.5 0.0017 18.7 0.1 2.2 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313125291|ref|YP_004035555.1| - 0.00053 19.0 0.0 0.00087 18.2 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|313125291|ref|YP_004035555.1| - 0.00053 19.7 0.0 0.0014 18.4 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|313125291|ref|YP_004035555.1| - 0.00054 19.4 0.1 0.0015 17.9 0.0 1.9 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|313125291|ref|YP_004035555.1| - 0.0012 17.9 0.1 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain AdoHcyase_NAD PF00670.16 gi|313125291|ref|YP_004035555.1| - 0.0019 18.0 0.1 0.0038 17.0 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|313125291|ref|YP_004035555.1| - 0.003 17.2 2.3 0.0046 16.6 0.1 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|313125291|ref|YP_004035555.1| - 0.0031 16.9 0.1 0.0058 16.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|313125291|ref|YP_004035555.1| - 0.0042 16.9 0.1 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|313125291|ref|YP_004035555.1| - 0.014 14.4 0.1 0.027 13.4 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|313125291|ref|YP_004035555.1| - 0.015 15.5 0.0 0.031 14.6 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Lycopene_cycl PF05834.7 gi|313125291|ref|YP_004035555.1| - 0.015 14.2 0.1 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|313125291|ref|YP_004035555.1| - 0.02 14.7 0.0 0.06 13.2 0.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|313125291|ref|YP_004035555.1| - 0.038 13.4 0.3 0.061 12.7 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Spermine_synth PF01564.12 gi|313125291|ref|YP_004035555.1| - 0.043 12.7 0.1 0.077 11.9 0.1 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase IlvN PF07991.7 gi|313125291|ref|YP_004035555.1| - 0.058 12.7 0.1 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DFP PF04127.10 gi|313125291|ref|YP_004035555.1| - 0.059 12.9 0.1 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein 2-Hacid_dh_C PF02826.14 gi|313125291|ref|YP_004035555.1| - 0.064 12.4 0.2 0.17 11.0 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|313125291|ref|YP_004035555.1| - 0.1 11.0 0.0 0.14 10.5 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_8 PF13450.1 gi|313125291|ref|YP_004035555.1| - 0.11 12.5 0.0 0.11 12.5 0.0 2.7 3 0 0 3 3 1 0 NAD(P)-binding Rossmann-like domain AMP-binding PF00501.23 gi|313125292|ref|YP_004035556.1| - 1e-90 304.1 0.0 1.3e-90 303.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Lactamase_B PF00753.22 gi|313125293|ref|YP_004035557.1| - 1e-20 74.2 4.9 1.7e-20 73.5 3.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313125293|ref|YP_004035557.1| - 0.0094 15.5 0.3 0.013 15.0 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain META PF03724.11 gi|313125294|ref|YP_004035558.1| - 6.2e-08 32.3 0.2 0.013 15.3 0.0 2.7 2 0 0 2 2 2 2 META domain HTH_20 PF12840.2 gi|313125295|ref|YP_004035559.1| - 2e-11 43.4 0.0 7.2e-11 41.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313125295|ref|YP_004035559.1| - 1.3e-09 37.5 0.0 2.6e-09 36.5 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|313125295|ref|YP_004035559.1| - 3.4e-08 32.7 0.0 5.1e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313125295|ref|YP_004035559.1| - 2e-06 27.3 0.4 8.6e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|313125295|ref|YP_004035559.1| - 0.00091 18.8 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF2513 PF10711.4 gi|313125295|ref|YP_004035559.1| - 0.0043 17.0 0.0 0.0067 16.4 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|313125295|ref|YP_004035559.1| - 0.016 15.3 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator B-block_TFIIIC PF04182.7 gi|313125295|ref|YP_004035559.1| - 0.017 14.9 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|313125295|ref|YP_004035559.1| - 0.02 14.5 0.1 0.056 13.1 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|313125295|ref|YP_004035559.1| - 0.052 13.8 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_2b PF00587.20 gi|313125296|ref|YP_004035560.1| - 7.2e-36 123.3 0.0 1.1e-35 122.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|313125296|ref|YP_004035560.1| - 3.3e-29 101.0 6.1 6.2e-29 100.1 4.3 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|313125296|ref|YP_004035560.1| - 0.047 12.1 3.3 0.073 11.4 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|313125296|ref|YP_004035560.1| - 0.18 10.7 6.0 0.68 8.9 3.7 1.9 2 0 0 2 2 2 0 Autophagy protein Apg6 Fmp27_WPPW PF10359.4 gi|313125296|ref|YP_004035560.1| - 0.49 8.7 4.6 0.48 8.7 2.4 1.5 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Mnd1 PF03962.10 gi|313125296|ref|YP_004035560.1| - 0.67 9.5 6.6 1.2 8.7 4.6 1.3 1 0 0 1 1 1 0 Mnd1 family V_ATPase_I PF01496.14 gi|313125296|ref|YP_004035560.1| - 1.3 6.8 5.0 0.81 7.4 2.0 1.6 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|313125296|ref|YP_004035560.1| - 6.1 6.4 15.1 0.51 9.8 7.2 1.5 2 0 0 2 2 2 0 IncA protein SnoaL_2 PF12680.2 gi|313125298|ref|YP_004035562.1| - 8.7e-11 42.1 2.6 1.2e-10 41.6 1.8 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|313125298|ref|YP_004035562.1| - 1.8e-08 34.5 1.1 2.5e-08 34.0 0.8 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|313125298|ref|YP_004035562.1| - 5.3e-07 29.6 0.9 6.6e-07 29.2 0.6 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|313125298|ref|YP_004035562.1| - 6.8e-07 29.6 0.0 8.1e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.1 gi|313125298|ref|YP_004035562.1| - 9.2e-07 28.9 0.1 1.5e-06 28.1 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|313125298|ref|YP_004035562.1| - 0.00011 21.7 0.2 0.00016 21.2 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase Lumazine_bd PF12870.2 gi|313125298|ref|YP_004035562.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.4 1 1 0 1 1 1 0 Lumazine-binding domain Lumazine_bd_2 PF12893.2 gi|313125298|ref|YP_004035562.1| - 0.024 15.1 0.0 0.037 14.5 0.0 1.4 1 1 0 1 1 1 0 Putative lumazine-binding DUF367 PF04034.8 gi|313125299|ref|YP_004035563.1| - 1.5e-46 157.1 0.0 1.8e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|313125299|ref|YP_004035563.1| - 1.5e-08 34.0 0.0 2.5e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI MMR_HSR1 PF01926.18 gi|313125300|ref|YP_004035564.1| - 2e-19 69.6 0.0 3.5e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|313125300|ref|YP_004035564.1| - 1.9e-18 66.0 0.0 3.7e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|313125300|ref|YP_004035564.1| - 3.5e-11 42.6 0.0 6.8e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|313125300|ref|YP_004035564.1| - 2.2e-06 28.1 0.0 5.2e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|313125300|ref|YP_004035564.1| - 8.6e-06 25.6 0.3 0.055 13.2 0.0 3.1 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.22 gi|313125300|ref|YP_004035564.1| - 8.6e-05 22.0 0.0 0.0023 17.4 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|313125300|ref|YP_004035564.1| - 0.00013 21.1 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family 6PF2K PF01591.13 gi|313125300|ref|YP_004035564.1| - 0.003 16.6 0.0 0.12 11.3 0.0 2.2 2 0 0 2 2 2 1 6-phosphofructo-2-kinase SRPRB PF09439.5 gi|313125300|ref|YP_004035564.1| - 0.005 16.0 0.0 0.015 14.5 0.0 1.8 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_25 PF13481.1 gi|313125300|ref|YP_004035564.1| - 0.025 13.9 0.1 7.4 5.9 0.0 2.7 1 1 2 3 3 3 0 AAA domain DUF258 PF03193.11 gi|313125300|ref|YP_004035564.1| - 0.037 13.2 0.0 0.1 11.7 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|313125300|ref|YP_004035564.1| - 0.043 13.5 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4174 PF13778.1 gi|313125300|ref|YP_004035564.1| - 0.082 13.0 0.3 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4174) Ras PF00071.17 gi|313125300|ref|YP_004035564.1| - 0.084 12.2 0.1 0.64 9.3 0.0 2.4 2 1 0 2 2 2 0 Ras family AAA_17 PF13207.1 gi|313125300|ref|YP_004035564.1| - 0.13 13.0 0.3 0.68 10.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain SIMPL PF04402.9 gi|313125301|ref|YP_004035565.1| - 7.2e-43 146.8 10.2 8.9e-43 146.5 7.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Flg_hook PF02120.11 gi|313125301|ref|YP_004035565.1| - 0.026 14.1 0.6 0.16 11.6 0.1 2.3 2 1 0 2 2 2 0 Flagellar hook-length control protein FliK YbaB_DNA_bd PF02575.11 gi|313125301|ref|YP_004035565.1| - 1.5 8.7 5.0 1.8 8.5 0.1 2.7 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family DUF4140 PF13600.1 gi|313125301|ref|YP_004035565.1| - 1.9 8.9 9.5 1.4 9.3 2.6 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF389 PF04087.9 gi|313125302|ref|YP_004035566.1| - 1.8e-33 115.4 19.6 1.8e-33 115.4 13.6 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF389) 5-FTHF_cyc-lig PF01812.15 gi|313125303|ref|YP_004035567.1| - 8.1e-30 103.9 0.0 9.6e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MMR_HSR1 PF01926.18 gi|313125304|ref|YP_004035568.1| - 2.9e-19 69.1 0.0 4.1e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|313125304|ref|YP_004035568.1| - 1.3e-13 50.5 0.1 1.8e-12 46.7 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|313125304|ref|YP_004035568.1| - 1.6e-07 30.9 0.0 0.00012 21.5 0.0 2.3 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|313125304|ref|YP_004035568.1| - 3.6e-06 26.2 0.0 1.4e-05 24.3 0.0 1.8 1 1 1 2 2 2 1 AIG1 family DUF258 PF03193.11 gi|313125304|ref|YP_004035568.1| - 0.00046 19.4 0.0 0.00076 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|313125304|ref|YP_004035568.1| - 0.00082 19.6 0.0 0.0013 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|313125304|ref|YP_004035568.1| - 0.0023 18.2 0.0 0.003 17.8 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|313125304|ref|YP_004035568.1| - 0.0046 17.4 0.2 0.041 14.3 0.0 2.2 1 1 0 2 2 2 1 Miro-like protein Dynamin_N PF00350.18 gi|313125304|ref|YP_004035568.1| - 0.0056 16.5 0.1 0.021 14.6 0.1 1.7 1 1 1 2 2 2 1 Dynamin family MobB PF03205.9 gi|313125304|ref|YP_004035568.1| - 0.0063 16.2 0.1 0.025 14.2 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B TIP49 PF06068.8 gi|313125304|ref|YP_004035568.1| - 0.012 14.3 0.2 0.02 13.6 0.2 1.3 1 0 0 1 1 1 0 TIP49 C-terminus AAA_17 PF13207.1 gi|313125304|ref|YP_004035568.1| - 0.013 16.3 0.2 0.057 14.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313125304|ref|YP_004035568.1| - 0.015 15.4 0.1 0.086 12.9 0.0 2.4 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|313125304|ref|YP_004035568.1| - 0.038 13.2 0.0 0.077 12.2 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.12 gi|313125304|ref|YP_004035568.1| - 0.043 13.3 1.3 0.63 9.5 0.0 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|313125304|ref|YP_004035568.1| - 0.043 13.2 0.1 0.1 12.0 0.0 1.6 2 0 0 2 2 2 0 Ras family PduV-EutP PF10662.4 gi|313125304|ref|YP_004035568.1| - 0.047 13.1 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Guanylate_kin PF00625.16 gi|313125304|ref|YP_004035568.1| - 0.048 13.1 0.0 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Guanylate kinase AAA_29 PF13555.1 gi|313125304|ref|YP_004035568.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|313125304|ref|YP_004035568.1| - 0.065 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Arf PF00025.16 gi|313125304|ref|YP_004035568.1| - 0.082 12.1 0.0 3.4 6.8 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family Pterin_bind PF00809.17 gi|313125304|ref|YP_004035568.1| - 0.083 12.2 0.0 0.18 11.1 0.0 1.5 1 1 1 2 2 2 0 Pterin binding enzyme AAA_25 PF13481.1 gi|313125304|ref|YP_004035568.1| - 0.083 12.2 0.0 0.2 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF2730 PF10805.3 gi|313125304|ref|YP_004035568.1| - 0.086 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Arch_ATPase PF01637.13 gi|313125304|ref|YP_004035568.1| - 0.13 11.8 0.1 0.44 10.2 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase DUF3179 PF11376.3 gi|313125305|ref|YP_004035569.1| - 4.5e-42 144.0 0.0 1.3e-24 86.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3179) B_lectin PF01453.19 gi|313125305|ref|YP_004035569.1| - 0.059 13.2 0.5 0.18 11.6 0.4 1.8 1 1 0 1 1 1 0 D-mannose binding lectin IF-2B PF01008.12 gi|313125306|ref|YP_004035570.1| - 4.3e-33 114.5 1.1 5.4e-33 114.1 0.8 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|313125306|ref|YP_004035570.1| - 5.8e-09 35.6 1.6 1.7e-08 34.1 1.1 1.8 1 0 0 1 1 1 1 NUDIX domain Metallophos_2 PF12850.2 gi|313125307|ref|YP_004035571.1| - 5.7e-21 74.9 0.6 6.8e-21 74.7 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain F420_ligase PF01996.11 gi|313125308|ref|YP_004035572.1| - 6.6e-66 221.6 0.0 7.5e-66 221.4 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.15 gi|313125309|ref|YP_004035573.1| - 1.3e-57 195.2 6.1 1.6e-57 194.9 3.7 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase Phage_Nu1 PF07471.7 gi|313125309|ref|YP_004035573.1| - 0.04 13.3 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 DZR PF12773.2 gi|313125311|ref|YP_004035575.1| - 0.023 14.5 0.4 0.046 13.5 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|313125311|ref|YP_004035575.1| - 0.032 14.0 1.8 0.099 12.4 1.2 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|313125311|ref|YP_004035575.1| - 0.035 13.8 0.5 0.054 13.1 0.3 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|313125311|ref|YP_004035575.1| - 0.044 13.4 1.7 0.093 12.4 1.2 1.6 1 0 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|313125311|ref|YP_004035575.1| - 0.12 11.6 1.5 0.31 10.3 1.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313125311|ref|YP_004035575.1| - 0.13 12.2 3.9 0.15 12.0 0.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|313125311|ref|YP_004035575.1| - 0.56 9.9 5.3 2.4 7.9 3.7 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-dskA_traR PF01258.12 gi|313125311|ref|YP_004035575.1| - 1.4 8.7 3.8 1.7 8.4 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2387 PF09526.5 gi|313125311|ref|YP_004035575.1| - 1.8 8.5 7.7 0.39 10.6 2.2 1.9 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) MutL_C PF08676.6 gi|313125312|ref|YP_004035576.1| - 4e-31 107.5 0.0 7e-31 106.7 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|313125312|ref|YP_004035576.1| - 1.2e-27 95.6 0.0 2.1e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|313125312|ref|YP_004035576.1| - 3e-11 43.1 0.0 5.1e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|313125312|ref|YP_004035576.1| - 5.5e-09 35.7 0.9 1.2e-08 34.6 0.4 1.9 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|313125313|ref|YP_004035577.1| - 8.3e-91 303.5 0.0 1.3e-90 302.9 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|313125313|ref|YP_004035577.1| - 7e-46 156.5 2.3 2e-45 155.1 1.2 1.9 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|313125313|ref|YP_004035577.1| - 2.8e-36 123.9 0.0 5.2e-36 123.1 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|313125313|ref|YP_004035577.1| - 3.6e-31 107.1 0.4 7.9e-31 106.0 0.3 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|313125313|ref|YP_004035577.1| - 3.9e-08 33.4 0.0 1.3e-07 31.7 0.0 1.9 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|313125313|ref|YP_004035577.1| - 0.0099 15.3 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313125313|ref|YP_004035577.1| - 0.046 14.0 0.1 0.47 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|313125313|ref|YP_004035577.1| - 0.085 12.7 0.0 0.26 11.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain TerB PF05099.8 gi|313125313|ref|YP_004035577.1| - 0.2 11.4 16.5 0.59 9.8 0.1 4.5 5 0 0 5 5 5 0 Tellurite resistance protein TerB AAA_3 PF07726.6 gi|313125314|ref|YP_004035578.1| - 1e-59 199.8 0.1 1.5e-59 199.3 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313125314|ref|YP_004035578.1| - 5.4e-13 48.8 0.0 9e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313125314|ref|YP_004035578.1| - 1.7e-06 28.2 0.0 3.1e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|313125314|ref|YP_004035578.1| - 5.5e-06 25.4 0.0 0.00047 19.0 0.0 2.4 2 1 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|313125314|ref|YP_004035578.1| - 1.4e-05 24.6 0.0 0.0014 18.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|313125314|ref|YP_004035578.1| - 3.7e-05 22.9 0.3 0.00092 18.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|313125314|ref|YP_004035578.1| - 0.0023 16.9 0.1 0.0094 15.0 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|313125314|ref|YP_004035578.1| - 0.067 13.0 0.0 0.28 11.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) POR PF01558.13 gi|313125314|ref|YP_004035578.1| - 0.13 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF58 PF01882.13 gi|313125315|ref|YP_004035579.1| - 1.2e-18 67.0 0.3 3.9e-18 65.3 0.1 2.1 3 0 0 3 3 3 1 Protein of unknown function DUF58 DUF4231 PF14015.1 gi|313125315|ref|YP_004035579.1| - 2.3 8.2 4.1 4.3 7.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Transglut_core PF01841.14 gi|313125316|ref|YP_004035580.1| - 5.8e-31 107.0 1.0 1.6e-30 105.5 0.1 2.2 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|313125316|ref|YP_004035580.1| - 7.1e-10 38.7 11.6 7.1e-10 38.7 8.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|313125316|ref|YP_004035580.1| - 9.9e-06 25.3 0.0 2.9e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Transglutaminase-like superfamily SUI1 PF01253.17 gi|313125317|ref|YP_004035581.1| - 5.2e-25 87.0 0.0 6e-25 86.8 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|313125317|ref|YP_004035581.1| - 0.053 13.7 0.0 0.071 13.3 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PsaN PF05479.6 gi|313125317|ref|YP_004035581.1| - 0.077 12.9 0.1 7.9 6.4 0.0 2.1 2 0 0 2 2 2 0 Photosystem I reaction centre subunit N (PSAN or PSI-N) DTW PF03942.10 gi|313125317|ref|YP_004035581.1| - 0.1 11.7 0.7 0.12 11.5 0.5 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|313125317|ref|YP_004035581.1| - 0.11 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) Rhodanese PF00581.15 gi|313125318|ref|YP_004035582.1| - 1e-13 51.5 0.0 1.3e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.23 gi|313125319|ref|YP_004035583.1| - 2.8e-16 59.4 1.1 3.9e-16 58.9 0.8 1.2 1 0 0 1 1 1 1 NUDIX domain DUF98 PF01947.11 gi|313125320|ref|YP_004035584.1| - 0.045 13.5 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF98) PAS_4 PF08448.5 gi|313125323|ref|YP_004035587.1| - 1.1e-30 105.8 5.3 4.1e-16 58.9 0.6 3.9 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|313125323|ref|YP_004035587.1| - 3.5e-27 94.8 0.1 3.6e-15 56.2 0.1 3.4 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|313125323|ref|YP_004035587.1| - 4.4e-25 88.9 8.1 4e-12 46.8 0.3 4.8 4 0 0 4 4 4 3 GAF domain PAS PF00989.19 gi|313125323|ref|YP_004035587.1| - 7.8e-25 86.8 0.1 4.9e-16 58.5 0.1 2.8 2 0 0 2 2 2 2 PAS fold HTH_10 PF04967.7 gi|313125323|ref|YP_004035587.1| - 2.1e-18 65.6 0.0 6.7e-18 64.0 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.21 gi|313125323|ref|YP_004035587.1| - 1.6e-16 60.8 8.5 1e-11 45.2 0.1 3.7 4 0 0 4 4 4 2 GAF domain PAS_8 PF13188.1 gi|313125323|ref|YP_004035587.1| - 5.9e-14 51.3 0.5 1.1e-06 28.3 0.0 3.4 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|313125323|ref|YP_004035587.1| - 1.6e-11 44.4 1.5 2.3e-07 30.9 0.0 4.0 4 0 0 4 4 4 2 GAF domain PAS_7 PF12860.2 gi|313125323|ref|YP_004035587.1| - 2.4e-11 43.6 2.8 2.9e-05 24.0 0.2 4.0 3 1 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|313125323|ref|YP_004035587.1| - 3.5e-08 33.6 0.0 0.00061 20.0 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|313125323|ref|YP_004035587.1| - 3.5e-06 27.0 0.0 0.0013 18.7 0.0 2.6 2 0 0 2 2 2 1 PAS fold Acetyltransf_1 PF00583.19 gi|313125324|ref|YP_004035588.1| - 7.2e-16 57.9 0.1 9.5e-16 57.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313125324|ref|YP_004035588.1| - 2.7e-09 37.0 0.0 4e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313125324|ref|YP_004035588.1| - 5.3e-09 36.2 0.0 6.8e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313125324|ref|YP_004035588.1| - 1.5e-06 28.1 0.0 2.2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125324|ref|YP_004035588.1| - 2.3e-06 27.2 0.0 4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|313125324|ref|YP_004035588.1| - 0.00026 20.9 0.0 0.00036 20.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Aconitase PF00330.15 gi|313125325|ref|YP_004035589.1| - 3.4e-100 335.7 0.3 5.7e-71 239.3 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|313125325|ref|YP_004035589.1| - 1.5e-21 76.8 0.0 2.9e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.12 gi|313125325|ref|YP_004035589.1| - 0.073 12.7 0.2 0.43 10.2 0.0 2.3 3 0 0 3 3 3 0 Barwin family DUF3631 PF12307.3 gi|313125326|ref|YP_004035590.1| - 0.098 12.5 0.1 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) dUTPase PF00692.14 gi|313125327|ref|YP_004035591.1| - 1.5e-11 43.8 0.0 2.2e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 dUTPase DUF4399 PF14347.1 gi|313125327|ref|YP_004035591.1| - 0.061 13.3 0.3 1.5 8.9 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4399) PAS_9 PF13426.1 gi|313125328|ref|YP_004035592.1| - 3.3e-16 59.5 0.0 9.8e-16 58.0 0.0 1.8 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.21 gi|313125328|ref|YP_004035592.1| - 1.5e-15 56.8 0.0 2.9e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313125328|ref|YP_004035592.1| - 3.4e-09 36.7 0.1 1.1e-08 35.1 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|313125328|ref|YP_004035592.1| - 3.9e-09 36.2 0.0 7.8e-09 35.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|313125328|ref|YP_004035592.1| - 1.2e-06 28.1 0.0 1e-05 25.2 0.0 2.6 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|313125328|ref|YP_004035592.1| - 7.2e-05 22.5 0.0 0.00015 21.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|313125328|ref|YP_004035592.1| - 0.00043 20.3 0.0 0.0012 18.8 0.0 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|313125328|ref|YP_004035592.1| - 0.0099 15.5 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TRF PF08558.5 gi|313125328|ref|YP_004035592.1| - 0.05 12.9 0.0 0.073 12.3 0.0 1.2 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) Muted PF14942.1 gi|313125328|ref|YP_004035592.1| - 0.066 13.0 0.1 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein AAA PF00004.24 gi|313125329|ref|YP_004035593.1| - 4.1e-43 146.7 0.1 9.6e-43 145.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|313125329|ref|YP_004035593.1| - 5.4e-08 32.9 0.0 1.5e-07 31.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|313125329|ref|YP_004035593.1| - 2.6e-07 29.9 0.0 8.8e-07 28.1 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|313125329|ref|YP_004035593.1| - 1.1e-06 28.8 0.1 9.8e-05 22.5 0.1 2.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|313125329|ref|YP_004035593.1| - 1.3e-06 28.1 0.2 5.9e-06 26.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|313125329|ref|YP_004035593.1| - 4.4e-06 26.8 4.8 0.0011 18.9 0.0 3.4 2 1 2 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|313125329|ref|YP_004035593.1| - 1.2e-05 26.1 1.3 4.9e-05 24.1 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|313125329|ref|YP_004035593.1| - 0.00028 20.5 0.2 0.00084 19.0 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|313125329|ref|YP_004035593.1| - 0.0003 20.6 0.0 0.00095 19.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|313125329|ref|YP_004035593.1| - 0.00033 19.6 0.0 0.00061 18.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|313125329|ref|YP_004035593.1| - 0.00034 20.5 0.0 0.00078 19.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|313125329|ref|YP_004035593.1| - 0.00039 19.2 0.0 0.00087 18.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|313125329|ref|YP_004035593.1| - 0.00056 20.2 0.4 0.015 15.6 0.0 2.8 3 0 0 3 3 3 1 AAA domain CASP_C PF08172.7 gi|313125329|ref|YP_004035593.1| - 0.00083 18.4 0.4 0.0012 17.9 0.3 1.2 1 0 0 1 1 1 1 CASP C terminal DUF904 PF06005.7 gi|313125329|ref|YP_004035593.1| - 0.00087 19.5 0.6 0.0025 18.0 0.3 1.9 2 0 0 2 2 1 1 Protein of unknown function (DUF904) IstB_IS21 PF01695.12 gi|313125329|ref|YP_004035593.1| - 0.00093 18.6 0.0 0.0054 16.1 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|313125329|ref|YP_004035593.1| - 0.0013 18.4 0.2 0.021 14.4 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.1 gi|313125329|ref|YP_004035593.1| - 0.0015 18.5 0.5 0.0043 17.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|313125329|ref|YP_004035593.1| - 0.0023 17.0 0.0 0.005 15.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.16 gi|313125329|ref|YP_004035593.1| - 0.0025 16.9 0.0 0.0054 15.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF3086 PF11285.3 gi|313125329|ref|YP_004035593.1| - 0.0058 15.4 0.4 0.0096 14.7 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3086) Sigma54_activat PF00158.21 gi|313125329|ref|YP_004035593.1| - 0.0083 15.6 0.1 0.041 13.3 0.0 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain DUF4201 PF13870.1 gi|313125329|ref|YP_004035593.1| - 0.012 15.0 1.4 0.02 14.3 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) NTPase_1 PF03266.10 gi|313125329|ref|YP_004035593.1| - 0.012 15.3 1.0 0.11 12.1 0.1 2.7 2 1 0 2 2 2 0 NTPase AAA_3 PF07726.6 gi|313125329|ref|YP_004035593.1| - 0.015 14.8 0.0 0.032 13.8 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|313125329|ref|YP_004035593.1| - 0.015 14.1 0.0 0.056 12.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_11 PF13086.1 gi|313125329|ref|YP_004035593.1| - 0.021 14.4 0.2 0.16 11.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|313125329|ref|YP_004035593.1| - 0.023 14.8 0.0 0.06 13.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase CPT PF07931.7 gi|313125329|ref|YP_004035593.1| - 0.03 13.9 0.0 0.083 12.5 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|313125329|ref|YP_004035593.1| - 0.035 13.9 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Torsin DMPK_coil PF08826.5 gi|313125329|ref|YP_004035593.1| - 0.043 13.6 5.7 0.05 13.5 2.6 2.2 2 0 0 2 2 1 0 DMPK coiled coil domain like Sigma54_activ_2 PF14532.1 gi|313125329|ref|YP_004035593.1| - 0.056 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|313125329|ref|YP_004035593.1| - 0.062 12.6 11.2 0.092 12.1 0.1 3.6 3 1 1 4 4 3 0 AAA domain IncA PF04156.9 gi|313125329|ref|YP_004035593.1| - 0.067 12.7 1.5 0.13 11.8 1.0 1.4 1 0 0 1 1 1 0 IncA protein ABC_tran PF00005.22 gi|313125329|ref|YP_004035593.1| - 0.09 13.0 1.4 0.2 11.9 0.0 2.3 2 2 0 2 2 2 0 ABC transporter BLOC1_2 PF10046.4 gi|313125329|ref|YP_004035593.1| - 0.09 12.9 0.2 0.09 12.9 0.2 2.2 3 0 0 3 3 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2203 PF09969.4 gi|313125329|ref|YP_004035593.1| - 0.1 12.8 0.6 0.27 11.4 0.4 1.7 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) APG6 PF04111.7 gi|313125329|ref|YP_004035593.1| - 0.11 11.4 1.0 0.17 10.8 0.7 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Parvo_NS1 PF01057.12 gi|313125329|ref|YP_004035593.1| - 0.12 11.1 0.0 0.28 10.0 0.0 1.5 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|313125329|ref|YP_004035593.1| - 1.8 7.6 5.2 1 8.4 0.0 2.7 3 1 1 4 4 4 0 KaiC NYD-SP28_assoc PF14775.1 gi|313125329|ref|YP_004035593.1| - 5.1 6.8 5.4 21 4.9 0.5 2.4 2 0 0 2 2 2 0 Sperm tail C-terminal domain PvlArgDC PF01862.11 gi|313125330|ref|YP_004035594.1| - 7.3e-28 97.2 0.1 8.1e-28 97.0 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) BMC PF00936.14 gi|313125330|ref|YP_004035594.1| - 0.038 13.6 0.8 0.33 10.6 0.0 2.3 2 0 0 2 2 2 0 BMC domain DUF1470 PF07336.6 gi|313125331|ref|YP_004035595.1| - 0.25 11.6 2.2 0.78 10.0 1.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1470) DUF3561 PF12084.3 gi|313125332|ref|YP_004035596.1| - 0.0086 15.9 1.1 0.011 15.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3561) AAA_4 PF04326.9 gi|313125334|ref|YP_004035598.1| - 5.4e-08 33.0 0.0 1e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Divergent AAA domain GTP_EFTU PF00009.22 gi|313125335|ref|YP_004035599.1| - 2.9e-33 114.9 0.0 2.3e-32 111.9 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|313125335|ref|YP_004035599.1| - 5.8e-23 80.8 1.6 1.5e-22 79.4 1.1 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|313125335|ref|YP_004035599.1| - 1.4e-14 53.9 5.8 5.9e-10 39.1 0.2 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|313125335|ref|YP_004035599.1| - 7.9e-11 41.4 0.4 2.5e-10 39.8 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|313125335|ref|YP_004035599.1| - 1e-06 28.6 0.0 2.5e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|313125335|ref|YP_004035599.1| - 0.0046 16.5 0.0 0.014 14.9 0.0 1.8 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|313125335|ref|YP_004035599.1| - 0.0049 16.7 0.1 0.43 10.3 0.0 2.7 1 1 1 2 2 2 1 Dynamin family Miro PF08477.8 gi|313125335|ref|YP_004035599.1| - 0.0069 16.8 0.0 0.016 15.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|313125335|ref|YP_004035599.1| - 0.0075 15.9 0.1 0.022 14.4 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF4224 PF13986.1 gi|313125335|ref|YP_004035599.1| - 0.023 14.2 0.0 1.4 8.4 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) PRC PF05239.11 gi|313125336|ref|YP_004035600.1| - 3.2e-10 39.7 0.0 3.6e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain UPF0278 PF08745.6 gi|313125337|ref|YP_004035601.1| - 0.00069 18.9 0.1 0.00098 18.4 0.0 1.3 1 0 0 1 1 1 1 UPF0278 family Rad50_zn_hook PF04423.9 gi|313125337|ref|YP_004035601.1| - 0.013 15.0 3.4 1.1 8.7 0.2 2.5 1 1 1 2 2 2 0 Rad50 zinc hook motif DUF4411 PF14367.1 gi|313125337|ref|YP_004035601.1| - 0.013 15.1 0.1 0.057 13.1 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) DZR PF12773.2 gi|313125337|ref|YP_004035601.1| - 0.015 15.1 1.0 0.024 14.4 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon PIN PF01850.16 gi|313125337|ref|YP_004035601.1| - 0.027 14.8 1.6 0.13 12.6 0.4 2.0 1 1 1 2 2 2 0 PIN domain zf-C2H2 PF00096.21 gi|313125337|ref|YP_004035601.1| - 0.06 13.7 2.0 3.2 8.2 0.2 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-C3HC4_3 PF13920.1 gi|313125337|ref|YP_004035601.1| - 0.061 13.0 1.1 0.089 12.4 0.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Mut7-C PF01927.11 gi|313125337|ref|YP_004035601.1| - 0.07 13.0 0.1 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain Zn-ribbon_8 PF09723.5 gi|313125337|ref|YP_004035601.1| - 0.12 12.3 4.6 1.4 8.8 3.2 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|313125337|ref|YP_004035601.1| - 0.13 12.6 0.9 10 6.7 0.1 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger NOB1_Zn_bind PF08772.6 gi|313125337|ref|YP_004035601.1| - 0.17 11.7 0.6 0.33 10.8 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|313125337|ref|YP_004035601.1| - 0.27 10.9 3.0 0.55 9.9 2.1 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2HC_2 PF13913.1 gi|313125337|ref|YP_004035601.1| - 0.59 9.8 8.2 0.26 10.9 0.5 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Abi PF02517.11 gi|313125338|ref|YP_004035602.1| - 4.1e-17 62.1 2.2 4.1e-17 62.1 1.5 2.1 2 1 0 2 2 2 1 CAAX protease self-immunity PGI PF00342.14 gi|313125339|ref|YP_004035603.1| - 5.3e-51 173.5 0.0 7.2e-51 173.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase 7tm_7 PF08395.7 gi|313125340|ref|YP_004035604.1| - 0.061 12.3 1.5 0.1 11.6 1.1 1.3 1 0 0 1 1 1 0 7tm Chemosensory receptor EcsB PF05975.7 gi|313125340|ref|YP_004035604.1| - 0.35 9.2 4.7 0.55 8.6 3.2 1.2 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF872 PF05915.7 gi|313125340|ref|YP_004035604.1| - 0.62 9.9 3.1 0.36 10.7 0.6 1.7 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF2182 PF09948.4 gi|313125340|ref|YP_004035604.1| - 0.62 9.9 5.8 0.13 12.1 0.3 2.3 1 1 2 3 3 3 0 Predicted metal-binding integral membrane protein (DUF2182) DUF805 PF05656.9 gi|313125340|ref|YP_004035604.1| - 4.6 7.1 11.6 3.9 7.3 4.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF805) SNARE_assoc PF09335.6 gi|313125341|ref|YP_004035605.1| - 1e-23 83.8 6.0 2.3e-23 82.6 4.2 1.6 1 0 0 1 1 1 1 SNARE associated Golgi protein CDP-OH_P_transf PF01066.16 gi|313125342|ref|YP_004035606.1| - 5e-12 46.0 11.3 1.2e-11 44.8 7.3 2.0 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase Acetyltransf_1 PF00583.19 gi|313125343|ref|YP_004035607.1| - 6e-14 51.8 0.1 1.3e-13 50.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313125343|ref|YP_004035607.1| - 1.5e-09 37.8 0.0 2.3e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313125343|ref|YP_004035607.1| - 1.9e-09 37.6 0.1 3e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125343|ref|YP_004035607.1| - 1.4e-08 34.3 0.0 4.1e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|313125343|ref|YP_004035607.1| - 8.7e-07 29.1 0.0 1.2e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313125343|ref|YP_004035607.1| - 5.9e-06 26.2 0.3 9.1e-06 25.6 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313125343|ref|YP_004035607.1| - 1.3e-05 25.0 0.0 2.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125343|ref|YP_004035607.1| - 0.01 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|313125343|ref|YP_004035607.1| - 0.03 14.0 0.1 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Glyco_transf_21 PF13506.1 gi|313125345|ref|YP_004035609.1| - 3e-11 42.9 0.0 7.3e-11 41.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|313125345|ref|YP_004035609.1| - 5.7e-10 39.1 0.1 9.1e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313125345|ref|YP_004035609.1| - 7.4e-07 29.2 0.0 9.7e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 SecD_SecF PF02355.11 gi|313125347|ref|YP_004035611.1| - 1.4e-31 109.1 13.6 1.4e-31 109.1 9.4 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|313125347|ref|YP_004035611.1| - 7.2e-07 28.0 0.0 2.1e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Herpes_US9 PF06072.6 gi|313125347|ref|YP_004035611.1| - 0.066 13.0 1.0 0.29 11.0 0.1 2.5 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 Patched PF02460.13 gi|313125347|ref|YP_004035611.1| - 0.17 9.7 14.1 0.24 9.2 9.8 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.11 gi|313125348|ref|YP_004035612.1| - 3.2e-12 46.0 9.9 6.1e-12 45.1 6.9 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sterol-sensing PF12349.3 gi|313125348|ref|YP_004035612.1| - 0.00013 21.4 3.1 0.00023 20.6 2.1 1.4 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation Sec_GG PF07549.9 gi|313125348|ref|YP_004035612.1| - 0.0024 16.9 0.0 0.0065 15.6 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|313125348|ref|YP_004035612.1| - 0.015 13.9 16.5 0.035 12.8 11.4 1.5 1 0 0 1 1 1 0 MMPL family HSP20 PF00011.16 gi|313125350|ref|YP_004035614.1| - 3.6e-19 68.5 0.0 4.8e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|313125350|ref|YP_004035614.1| - 0.059 12.8 0.0 0.06 12.7 0.0 1.0 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 DUF538 PF04398.7 gi|313125350|ref|YP_004035614.1| - 0.099 12.9 0.0 0.19 11.9 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function, DUF538 RNase_HII PF01351.13 gi|313125351|ref|YP_004035615.1| - 4e-40 137.5 0.0 4.6e-40 137.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII R3H-assoc PF13902.1 gi|313125352|ref|YP_004035616.1| - 0.13 12.2 0.7 0.14 12.1 0.5 1.0 1 0 0 1 1 1 0 R3H-associated N-terminal domain Sigma70_ner PF04546.8 gi|313125352|ref|YP_004035616.1| - 4 7.0 7.5 4.1 6.9 5.2 1.0 1 0 0 1 1 1 0 Sigma-70, non-essential region THUMP PF02926.12 gi|313125353|ref|YP_004035617.1| - 5.2e-08 32.8 0.1 1.1e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|313125353|ref|YP_004035617.1| - 0.0002 21.3 1.7 0.0002 21.3 1.2 2.7 3 0 0 3 3 3 1 DnaJ central domain DUF374 PF04028.8 gi|313125354|ref|YP_004035618.1| - 0.067 12.4 0.1 0.33 10.2 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF374) PEP_mutase PF13714.1 gi|313125355|ref|YP_004035619.1| - 5.2e-45 153.5 0.0 6.5e-45 153.2 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|313125355|ref|YP_004035619.1| - 1.1e-34 119.5 1.0 8.3e-17 60.5 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family ABC_tran PF00005.22 gi|313125357|ref|YP_004035621.1| - 1.6e-30 106.2 0.0 2.7e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125357|ref|YP_004035621.1| - 1.7e-16 61.0 0.4 3.2e-10 40.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|313125357|ref|YP_004035621.1| - 0.00024 20.5 0.1 0.00083 18.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|313125357|ref|YP_004035621.1| - 0.00034 20.1 0.0 0.00069 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|313125357|ref|YP_004035621.1| - 0.0025 17.5 0.1 0.79 9.4 0.0 3.1 3 0 0 3 3 3 1 NTPase AAA_23 PF13476.1 gi|313125357|ref|YP_004035621.1| - 0.0045 17.3 0.0 0.0065 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313125357|ref|YP_004035621.1| - 0.0064 15.5 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|313125357|ref|YP_004035621.1| - 0.022 14.2 0.1 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313125357|ref|YP_004035621.1| - 0.039 13.1 0.0 2 7.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|313125357|ref|YP_004035621.1| - 0.048 12.8 0.1 0.24 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313125357|ref|YP_004035621.1| - 0.079 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|313125357|ref|YP_004035621.1| - 0.082 12.4 0.0 0.35 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.1 gi|313125357|ref|YP_004035621.1| - 0.089 13.3 0.0 0.29 11.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) AAA_17 PF13207.1 gi|313125357|ref|YP_004035621.1| - 0.16 12.7 1.1 1.6 9.5 0.7 2.5 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|313125358|ref|YP_004035622.1| - 2.2e-30 105.3 19.4 3e-30 104.9 13.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|313125358|ref|YP_004035622.1| - 5.2e-07 29.0 22.4 6.9e-07 28.6 15.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Rer1 PF03248.8 gi|313125358|ref|YP_004035622.1| - 0.031 13.8 0.4 0.054 13.0 0.2 1.4 1 0 0 1 1 1 0 Rer1 family Wzy_C PF04932.10 gi|313125358|ref|YP_004035622.1| - 9 6.0 13.6 1.9 8.2 5.5 2.2 1 1 1 2 2 2 0 O-Antigen ligase CbiG_mid PF11761.3 gi|313125359|ref|YP_004035623.1| - 0.072 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis central region G_glu_transpept PF01019.16 gi|313125360|ref|YP_004035624.1| - 4.3e-150 500.5 0.0 4.9e-150 500.4 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Sugar_transport PF06800.7 gi|313125361|ref|YP_004035625.1| - 0.022 13.8 0.5 0.022 13.8 0.4 1.0 1 0 0 1 1 1 0 Sugar transport protein FUSC_2 PF13515.1 gi|313125361|ref|YP_004035625.1| - 0.034 14.0 1.3 0.037 13.9 0.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein-like Gram_pos_anchor PF00746.16 gi|313125361|ref|YP_004035625.1| - 0.06 13.1 5.3 0.32 10.8 0.0 2.2 2 0 0 2 2 2 0 Gram positive anchor Arrestin_C PF02752.17 gi|313125362|ref|YP_004035626.1| - 0.0044 17.1 0.0 0.0065 16.5 0.0 1.2 1 0 0 1 1 1 1 Arrestin (or S-antigen), C-terminal domain A2M_N_2 PF07703.9 gi|313125362|ref|YP_004035626.1| - 0.018 14.7 0.1 0.041 13.6 0.0 1.5 2 0 0 2 2 2 0 Alpha-2-macroglobulin family N-terminal region DUF11 PF01345.13 gi|313125362|ref|YP_004035626.1| - 0.14 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF11 ABC_tran PF00005.22 gi|313125363|ref|YP_004035627.1| - 4.3e-32 111.2 0.0 7.3e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313125363|ref|YP_004035627.1| - 1.1e-17 64.1 0.2 2e-17 63.2 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313125363|ref|YP_004035627.1| - 3.7e-07 30.3 0.0 0.00034 20.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|313125363|ref|YP_004035627.1| - 8.1e-06 26.0 0.0 0.00011 22.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313125363|ref|YP_004035627.1| - 8.2e-05 22.6 0.0 0.00018 21.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|313125363|ref|YP_004035627.1| - 0.00021 21.4 0.0 0.0017 18.5 0.0 2.4 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|313125363|ref|YP_004035627.1| - 0.00094 18.6 0.0 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313125363|ref|YP_004035627.1| - 0.0014 17.8 0.0 0.0029 16.8 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|313125363|ref|YP_004035627.1| - 0.0027 16.9 0.0 0.0048 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|313125363|ref|YP_004035627.1| - 0.0047 16.4 0.0 0.0067 15.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|313125363|ref|YP_004035627.1| - 0.0051 16.6 0.0 0.02 14.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|313125363|ref|YP_004035627.1| - 0.0072 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|313125363|ref|YP_004035627.1| - 0.02 13.7 0.0 0.031 13.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|313125363|ref|YP_004035627.1| - 0.029 13.7 0.0 0.22 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|313125363|ref|YP_004035627.1| - 0.04 13.0 0.0 0.092 11.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|313125363|ref|YP_004035627.1| - 0.042 13.5 0.1 0.1 12.2 0.0 1.7 2 0 0 2 2 1 0 NACHT domain Zeta_toxin PF06414.7 gi|313125363|ref|YP_004035627.1| - 0.067 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.13 gi|313125363|ref|YP_004035627.1| - 0.09 12.3 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|313125363|ref|YP_004035627.1| - 0.097 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|313125363|ref|YP_004035627.1| - 0.12 12.6 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313125363|ref|YP_004035627.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|313125364|ref|YP_004035628.1| - 1.8e-26 93.0 0.0 3.4e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313125364|ref|YP_004035628.1| - 1.9e-19 69.7 0.2 3.5e-19 68.9 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313125364|ref|YP_004035628.1| - 2.4e-06 27.7 0.0 2.2e-05 24.5 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|313125364|ref|YP_004035628.1| - 0.0015 18.7 0.1 0.35 11.0 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313125364|ref|YP_004035628.1| - 0.014 14.7 0.1 0.05 12.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|313125364|ref|YP_004035628.1| - 0.057 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|313125364|ref|YP_004035628.1| - 0.097 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|313125364|ref|YP_004035628.1| - 0.12 11.5 0.1 0.27 10.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|313125364|ref|YP_004035628.1| - 0.12 11.7 0.6 0.84 9.0 0.3 2.1 1 1 1 2 2 2 0 AAA-like domain BPD_transp_1 PF00528.17 gi|313125365|ref|YP_004035629.1| - 2e-31 108.9 6.8 2e-31 108.9 4.7 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC2_membrane_4 PF12730.2 gi|313125365|ref|YP_004035629.1| - 0.00091 18.4 0.4 0.00091 18.4 0.3 3.0 3 0 0 3 3 3 1 ABC-2 family transporter protein Herpes_US9 PF06072.6 gi|313125365|ref|YP_004035629.1| - 0.11 12.3 1.6 5.4 6.9 0.0 2.8 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 OppC_N PF12911.2 gi|313125365|ref|YP_004035629.1| - 0.18 11.1 0.1 0.18 11.1 0.1 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|313125366|ref|YP_004035630.1| - 5.8e-48 162.8 11.7 5.8e-48 162.8 8.1 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|313125367|ref|YP_004035631.1| - 5.3e-69 232.8 7.6 7.4e-69 232.3 5.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313125367|ref|YP_004035631.1| - 0.0041 17.0 3.0 0.0078 16.1 2.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Methyltrn_RNA_2 PF04013.7 gi|313125368|ref|YP_004035632.1| - 8.4e-63 211.5 0.0 9.3e-63 211.3 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase FliD_C PF07195.7 gi|313125369|ref|YP_004035633.1| - 0.0024 17.1 0.0 0.36 10.0 0.0 2.2 2 0 0 2 2 2 2 Flagellar hook-associated protein 2 C-terminus DUF457 PF04307.9 gi|313125370|ref|YP_004035634.1| - 6.8e-11 41.7 25.8 1.9e-09 37.0 17.9 3.1 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Arylsulfotran_2 PF14269.1 gi|313125371|ref|YP_004035635.1| - 1.4e-10 40.8 3.1 4.7e-07 29.2 0.6 3.2 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|313125371|ref|YP_004035635.1| - 3e-06 26.0 1.7 2e-05 23.3 0.4 2.6 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|313125371|ref|YP_004035635.1| - 0.0018 18.1 4.2 0.12 12.3 0.1 4.3 6 0 0 6 6 6 1 NHL repeat NUDIX PF00293.23 gi|313125372|ref|YP_004035636.1| - 2.5e-14 53.0 0.3 3.4e-14 52.6 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain Abi PF02517.11 gi|313125373|ref|YP_004035637.1| - 6.3e-18 64.7 3.3 6.3e-18 64.7 2.3 2.6 2 1 0 2 2 2 1 CAAX protease self-immunity MCPsignal PF00015.16 gi|313125375|ref|YP_004035639.1| - 1.3e-49 168.6 70.0 1.3e-47 162.1 25.1 4.1 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|313125375|ref|YP_004035639.1| - 5e-05 23.0 37.9 0.047 13.5 1.0 5.7 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.20 gi|313125375|ref|YP_004035639.1| - 0.0036 17.4 0.3 0.0036 17.4 0.2 4.9 5 2 0 5 5 4 1 HAMP domain Laminin_II PF06009.7 gi|313125375|ref|YP_004035639.1| - 0.0075 16.0 45.9 0.13 11.9 1.2 5.3 3 2 2 5 5 5 4 Laminin Domain II IncA PF04156.9 gi|313125375|ref|YP_004035639.1| - 0.71 9.4 39.0 47 3.5 3.2 4.5 1 1 2 3 3 3 0 IncA protein Spc7 PF08317.6 gi|313125375|ref|YP_004035639.1| - 0.78 8.3 38.5 0.11 11.1 5.6 3.6 1 1 1 3 3 3 0 Spc7 kinetochore protein DUF3584 PF12128.3 gi|313125375|ref|YP_004035639.1| - 1.1 6.5 42.7 0.01 13.2 13.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) CCDC155 PF14662.1 gi|313125375|ref|YP_004035639.1| - 1.5 8.3 40.4 0.71 9.4 0.6 3.8 3 1 0 3 3 3 0 Coiled-coil region of CCDC155 DUF869 PF05911.6 gi|313125375|ref|YP_004035639.1| - 1.6 6.8 45.6 6 4.9 10.4 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) DUF1664 PF07889.7 gi|313125375|ref|YP_004035639.1| - 4.5 7.0 32.1 1.6 8.5 1.4 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Syntaxin-6_N PF09177.6 gi|313125375|ref|YP_004035639.1| - 4.8 7.6 40.2 0.32 11.4 1.3 5.2 2 2 2 5 5 5 0 Syntaxin 6, N-terminal Atg14 PF10186.4 gi|313125375|ref|YP_004035639.1| - 6.8 5.5 26.8 0.78 8.6 3.4 3.2 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Bacillus_HBL PF05791.6 gi|313125375|ref|YP_004035639.1| - 7.1 5.9 26.2 3.1 7.1 1.3 4.9 2 2 3 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) MutS_III PF05192.13 gi|313125375|ref|YP_004035639.1| - 10 5.8 15.6 3.1e+03 -2.3 10.8 3.1 1 1 0 1 1 1 0 MutS domain III 7TMR-DISM_7TM PF07695.6 gi|313125376|ref|YP_004035640.1| - 0.0029 17.3 0.3 0.0032 17.1 0.2 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling NnrS PF05940.7 gi|313125376|ref|YP_004035640.1| - 0.035 13.0 0.9 0.037 12.9 0.6 1.1 1 0 0 1 1 1 0 NnrS protein MerC PF03203.9 gi|313125376|ref|YP_004035640.1| - 0.074 13.4 1.3 0.1 13.0 0.9 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein YhhN PF07947.9 gi|313125376|ref|YP_004035640.1| - 0.078 12.3 1.0 0.1 11.9 0.7 1.1 1 0 0 1 1 1 0 YhhN-like protein DUF2107 PF09880.4 gi|313125376|ref|YP_004035640.1| - 0.28 11.0 2.7 0.23 11.3 0.6 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) TGT PF01702.13 gi|313125377|ref|YP_004035641.1| - 4.4e-49 166.9 0.0 5.7e-49 166.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|313125377|ref|YP_004035641.1| - 0.16 11.7 0.0 5.7 6.8 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Strep_SA_rep PF06696.6 gi|313125377|ref|YP_004035641.1| - 1.9 8.3 4.7 3.6 7.4 0.0 2.8 3 0 0 3 3 3 0 Streptococcal surface antigen repeat HTH_5 PF01022.15 gi|313125378|ref|YP_004035642.1| - 8.4e-09 34.9 0.0 1.1e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313125378|ref|YP_004035642.1| - 2.8e-08 33.4 0.1 3.7e-08 33.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|313125378|ref|YP_004035642.1| - 0.00095 18.9 0.0 0.0016 18.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|313125378|ref|YP_004035642.1| - 0.001 18.4 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313125378|ref|YP_004035642.1| - 0.0031 17.1 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|313125378|ref|YP_004035642.1| - 0.028 14.0 0.1 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|313125378|ref|YP_004035642.1| - 0.031 13.8 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|313125378|ref|YP_004035642.1| - 0.032 14.3 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor MarR_2 PF12802.2 gi|313125378|ref|YP_004035642.1| - 0.034 13.8 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|313125378|ref|YP_004035642.1| - 0.039 13.4 0.0 0.05 13.1 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.1 gi|313125378|ref|YP_004035642.1| - 0.085 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Phage_rep_org_N PF09681.5 gi|313125378|ref|YP_004035642.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PAS_7 PF12860.2 gi|313125380|ref|YP_004035644.1| - 1.7e-13 50.5 5.5 0.18 11.8 0.0 5.7 6 0 0 6 6 6 5 PAS fold Rep_fac-A_3 PF08661.6 gi|313125380|ref|YP_004035644.1| - 0.00011 22.0 1.5 1.1 9.1 0.0 5.3 4 1 1 5 5 5 1 Replication factor A protein 3 Collagen_bind PF05737.7 gi|313125380|ref|YP_004035644.1| - 1.9 8.6 9.6 0.72 10.0 0.2 3.6 4 0 0 4 4 4 0 Collagen binding domain BSMAP PF12280.3 gi|313125380|ref|YP_004035644.1| - 3 7.6 8.8 33 4.2 0.0 3.8 4 0 0 4 4 4 0 Brain specific membrane anchored protein Pyridox_ox_2 PF12900.2 gi|313125381|ref|YP_004035645.1| - 6e-06 26.1 0.0 7.1e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|313125381|ref|YP_004035645.1| - 0.0011 18.9 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DSHCT PF08148.7 gi|313125381|ref|YP_004035645.1| - 0.026 13.7 0.0 0.037 13.2 0.0 1.2 1 0 0 1 1 1 0 DSHCT (NUC185) domain APH PF01636.18 gi|313125381|ref|YP_004035645.1| - 0.077 12.7 0.0 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 Phosphotransferase enzyme family TGT_C2 PF14810.1 gi|313125382|ref|YP_004035646.1| - 6.2e-23 80.4 0.0 1.6e-22 79.1 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|313125382|ref|YP_004035646.1| - 5.8e-19 68.3 0.0 9.5e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|313125382|ref|YP_004035646.1| - 4.9e-13 48.6 0.6 1.1e-12 47.4 0.4 1.6 1 0 0 1 1 1 1 PUA domain ThiS PF02597.15 gi|313125384|ref|YP_004035648.1| - 7.8e-20 71.0 0.2 8.6e-20 70.9 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|313125384|ref|YP_004035648.1| - 0.0074 16.3 0.0 0.0077 16.3 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ABC_tran PF00005.22 gi|313125387|ref|YP_004035651.1| - 6.1e-13 49.2 0.0 7.2e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|313125387|ref|YP_004035651.1| - 0.00019 20.8 0.1 0.0003 20.2 0.0 1.4 1 1 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|313125387|ref|YP_004035651.1| - 0.0019 17.0 0.1 0.0019 16.9 0.1 1.1 1 0 0 1 1 1 1 ArgK protein AAA_23 PF13476.1 gi|313125387|ref|YP_004035651.1| - 0.006 16.9 0.0 0.0078 16.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313125387|ref|YP_004035651.1| - 0.015 14.4 0.0 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|313125387|ref|YP_004035651.1| - 0.016 15.1 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|313125387|ref|YP_004035651.1| - 0.03 13.7 0.1 0.036 13.5 0.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|313125387|ref|YP_004035651.1| - 0.038 13.9 0.0 0.038 13.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|313125387|ref|YP_004035651.1| - 0.061 13.2 0.0 0.089 12.6 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313125387|ref|YP_004035651.1| - 0.085 13.0 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313125387|ref|YP_004035651.1| - 0.12 11.8 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|313125387|ref|YP_004035651.1| - 0.14 11.6 0.1 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DNA_binding_1 PF01035.15 gi|313125388|ref|YP_004035652.1| - 3.6e-22 77.9 0.0 5e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF1056 PF06341.6 gi|313125389|ref|YP_004035653.1| - 0.17 11.9 2.2 0.2 11.6 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) Methyltransf_2 PF00891.13 gi|313125390|ref|YP_004035654.1| - 4.5e-24 84.9 0.0 5.8e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|313125390|ref|YP_004035654.1| - 2e-11 44.4 0.0 4.3e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125390|ref|YP_004035654.1| - 2.4e-09 37.1 0.0 1.8e-08 34.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125390|ref|YP_004035654.1| - 4e-06 27.2 0.0 8.9e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Dimerisation PF08100.6 gi|313125390|ref|YP_004035654.1| - 0.00017 21.3 0.0 0.00041 20.1 0.0 1.6 1 0 0 1 1 1 1 Dimerisation domain MTS PF05175.9 gi|313125390|ref|YP_004035654.1| - 0.0046 16.3 0.0 0.0076 15.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|313125390|ref|YP_004035654.1| - 0.05 14.1 0.0 0.095 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain HTH_10 PF04967.7 gi|313125391|ref|YP_004035655.1| - 5.5e-17 61.0 0.0 8.6e-17 60.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|313125391|ref|YP_004035655.1| - 0.019 14.3 0.0 0.042 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DICT PF10069.4 gi|313125391|ref|YP_004035655.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Sensory domain found in DIguanylate Cyclases & Two-component systems Fe_dep_repress PF01325.14 gi|313125391|ref|YP_004035655.1| - 0.033 14.1 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|313125391|ref|YP_004035655.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family OrfB_IS605 PF01385.14 gi|313125392|ref|YP_004035656.1| - 1.2e-60 204.7 0.3 1.5e-60 204.4 0.2 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313125392|ref|YP_004035656.1| - 5.5e-20 70.8 1.7 1.5e-19 69.4 0.9 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zot PF05707.7 gi|313125392|ref|YP_004035656.1| - 0.014 14.8 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Ribosomal_L37ae PF01780.14 gi|313125392|ref|YP_004035656.1| - 0.049 13.5 0.5 0.16 11.8 0.2 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family C1_3 PF07649.7 gi|313125392|ref|YP_004035656.1| - 0.11 12.5 3.3 0.3 11.1 2.3 1.8 1 0 0 1 1 1 0 C1-like domain DUF3791 PF12668.2 gi|313125392|ref|YP_004035656.1| - 0.14 11.7 0.0 0.49 10.0 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) Abhydrolase_6 PF12697.2 gi|313125393|ref|YP_004035657.1| - 8.2e-34 117.4 5.0 9.5e-34 117.2 3.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313125393|ref|YP_004035657.1| - 4.7e-15 55.6 0.0 8.3e-15 54.8 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313125393|ref|YP_004035657.1| - 6e-07 29.2 0.0 0.0027 17.2 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|313125393|ref|YP_004035657.1| - 2.2e-06 28.0 0.0 2.9e-06 27.6 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_8 PF06259.7 gi|313125393|ref|YP_004035657.1| - 0.0021 17.5 0.0 0.0035 16.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase Esterase PF00756.15 gi|313125393|ref|YP_004035657.1| - 0.0046 16.4 0.1 0.03 13.7 0.0 2.0 2 0 0 2 2 2 1 Putative esterase Ser_hydrolase PF06821.8 gi|313125393|ref|YP_004035657.1| - 0.0087 15.6 0.0 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 Serine hydrolase Abhydrolase_4 PF08386.5 gi|313125393|ref|YP_004035657.1| - 0.023 14.5 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Lipase_3 PF01764.20 gi|313125393|ref|YP_004035657.1| - 0.052 13.1 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) DUF1057 PF06342.7 gi|313125393|ref|YP_004035657.1| - 0.13 11.0 0.0 0.31 9.8 0.0 1.5 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1057) Complex1_51K PF01512.12 gi|313125394|ref|YP_004035658.1| - 6.7e-21 74.6 0.0 1e-20 74.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|313125394|ref|YP_004035658.1| - 1.1e-05 25.0 0.2 2.2e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.17 gi|313125394|ref|YP_004035658.1| - 0.011 15.3 0.1 0.026 14.1 0.1 1.6 1 0 0 1 1 1 0 Biotin-requiring enzyme SLBB PF10531.4 gi|313125394|ref|YP_004035658.1| - 0.031 14.1 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 SLBB domain Sulfate_transp PF00916.15 gi|313125396|ref|YP_004035660.1| - 8.9e-10 38.0 12.1 8.9e-10 38.0 8.4 2.1 2 1 0 2 2 2 1 Sulfate transporter family Peptidase_M50 PF02163.17 gi|313125396|ref|YP_004035660.1| - 0.046 12.6 1.8 0.37 9.7 0.2 2.6 1 1 1 2 2 2 0 Peptidase family M50 AzlC PF03591.9 gi|313125397|ref|YP_004035661.1| - 2.9e-45 153.7 5.0 2.9e-45 153.7 3.5 1.7 2 0 0 2 2 2 1 AzlC protein DUF805 PF05656.9 gi|313125397|ref|YP_004035661.1| - 2.7 7.8 6.2 0.9 9.3 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF805) AzlD PF05437.7 gi|313125398|ref|YP_004035662.1| - 1e-21 76.7 12.2 8.9e-21 73.6 8.5 1.9 1 1 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AFOR_C PF01314.13 gi|313125399|ref|YP_004035663.1| - 3.2e-122 407.9 1.2 3.9e-122 407.6 0.8 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|313125399|ref|YP_004035663.1| - 3.6e-80 268.0 0.0 5.1e-80 267.5 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Radical_SAM PF04055.16 gi|313125400|ref|YP_004035664.1| - 0.047 13.8 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily SH3_4 PF06347.8 gi|313125401|ref|YP_004035665.1| - 0.0011 18.4 0.1 0.0015 18.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial SH3 domain SH3_3 PF08239.6 gi|313125401|ref|YP_004035665.1| - 0.025 14.7 0.3 0.027 14.6 0.2 1.1 1 0 0 1 1 1 0 Bacterial SH3 domain Methyltransf_11 PF08241.7 gi|313125402|ref|YP_004035666.1| - 1.3e-21 76.9 0.0 2.9e-21 75.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313125402|ref|YP_004035666.1| - 2.9e-17 62.6 0.0 4.1e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125402|ref|YP_004035666.1| - 9.7e-14 51.3 0.0 2.5e-13 50.0 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125402|ref|YP_004035666.1| - 1.3e-12 47.9 0.0 2.6e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125402|ref|YP_004035666.1| - 3.6e-12 46.5 0.1 9.2e-12 45.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313125402|ref|YP_004035666.1| - 4.2e-12 45.6 0.0 7.2e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|313125402|ref|YP_004035666.1| - 2e-11 44.4 0.2 3.6e-11 43.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|313125402|ref|YP_004035666.1| - 8e-08 32.0 0.0 1.5e-07 31.1 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|313125402|ref|YP_004035666.1| - 2e-07 30.3 0.0 3.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|313125402|ref|YP_004035666.1| - 2.2e-07 30.9 0.8 4.5e-07 29.9 0.6 1.5 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.13 gi|313125402|ref|YP_004035666.1| - 0.022 14.0 0.0 0.64 9.2 0.0 2.1 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain MetW PF07021.7 gi|313125402|ref|YP_004035666.1| - 0.022 14.1 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW NodS PF05401.6 gi|313125402|ref|YP_004035666.1| - 0.032 13.6 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_8 PF05148.10 gi|313125402|ref|YP_004035666.1| - 0.077 12.6 0.1 0.16 11.5 0.1 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.9 gi|313125402|ref|YP_004035666.1| - 0.1 11.9 0.0 0.16 11.3 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Fibrillarin PF01269.12 gi|313125402|ref|YP_004035666.1| - 0.13 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin GATase_5 PF13507.1 gi|313125403|ref|YP_004035667.1| - 7.1e-45 152.9 0.0 9.1e-45 152.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|313125403|ref|YP_004035667.1| - 7.1e-07 28.8 0.0 8.7e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|313125403|ref|YP_004035667.1| - 2e-05 24.2 0.0 3.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|313125403|ref|YP_004035667.1| - 0.0041 16.5 0.0 0.0059 16.0 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|313125403|ref|YP_004035667.1| - 0.037 13.2 0.0 0.049 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase PurS PF02700.9 gi|313125404|ref|YP_004035668.1| - 1.4e-25 89.0 0.0 1.6e-25 88.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF3333 PF11812.3 gi|313125404|ref|YP_004035668.1| - 0.11 12.4 0.2 0.15 12.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) Phage_tail_2 PF06199.6 gi|313125404|ref|YP_004035668.1| - 0.13 12.3 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Phage major tail protein 2 Formyl_trans_N PF00551.14 gi|313125405|ref|YP_004035669.1| - 6.2e-40 136.6 0.0 1e-39 135.9 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.1 gi|313125405|ref|YP_004035669.1| - 1e-07 31.5 0.3 2.1e-07 30.5 0.2 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|313125405|ref|YP_004035669.1| - 2.9e-06 26.6 0.4 9.2e-06 25.0 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|313125405|ref|YP_004035669.1| - 0.00013 22.2 0.1 0.0014 18.8 0.1 2.4 2 0 0 2 2 2 1 ACT domain TMV_coat PF00721.16 gi|313125405|ref|YP_004035669.1| - 0.072 13.0 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Virus coat protein (TMV like) SAICAR_synt PF01259.13 gi|313125406|ref|YP_004035670.1| - 1.5e-18 66.8 0.0 1.2e-17 63.8 0.0 1.9 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.1 gi|313125406|ref|YP_004035670.1| - 0.023 14.5 0.1 0.023 14.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4110) SIR2 PF02146.12 gi|313125407|ref|YP_004035671.1| - 5.4e-39 133.7 0.0 6.7e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 Sir2 family XPG_I PF00867.13 gi|313125407|ref|YP_004035671.1| - 0.018 15.1 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 XPG I-region Acetyltransf_1 PF00583.19 gi|313125408|ref|YP_004035672.1| - 4.7e-17 61.7 0.1 6.6e-17 61.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313125408|ref|YP_004035672.1| - 2e-10 40.7 0.1 2.4e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313125408|ref|YP_004035672.1| - 4.3e-09 36.4 0.0 5.6e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125408|ref|YP_004035672.1| - 2.7e-05 24.2 0.0 4.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125408|ref|YP_004035672.1| - 9.6e-05 22.0 0.0 0.00015 21.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|313125408|ref|YP_004035672.1| - 0.00098 19.0 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313125408|ref|YP_004035672.1| - 0.004 17.3 0.0 0.0046 17.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125408|ref|YP_004035672.1| - 0.02 14.7 0.0 0.043 13.6 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|313125408|ref|YP_004035672.1| - 0.11 12.2 0.1 0.41 10.5 0.1 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain HATPase_c PF02518.21 gi|313125409|ref|YP_004035673.1| - 3.9e-18 65.2 0.2 7.6e-18 64.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313125409|ref|YP_004035673.1| - 2.4e-16 59.7 1.0 2.4e-16 59.7 0.7 1.8 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|313125409|ref|YP_004035673.1| - 5.1e-14 52.0 0.5 5.1e-14 52.0 0.3 1.7 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|313125409|ref|YP_004035673.1| - 2.2e-11 44.0 0.2 5.8e-11 42.6 0.1 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|313125409|ref|YP_004035673.1| - 1.2e-09 37.9 0.1 3e-09 36.6 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|313125409|ref|YP_004035673.1| - 1.3e-06 28.0 0.5 5.8e-06 25.9 0.1 2.3 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|313125409|ref|YP_004035673.1| - 2.6e-05 24.1 1.1 0.0003 20.7 0.2 3.0 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|313125409|ref|YP_004035673.1| - 0.00073 19.3 0.1 0.0015 18.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|313125409|ref|YP_004035673.1| - 0.11 12.0 0.0 0.3 10.6 0.0 1.8 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain M20_dimer PF07687.9 gi|313125409|ref|YP_004035673.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase dimerisation domain IncA PF04156.9 gi|313125409|ref|YP_004035673.1| - 3 7.3 0.0 3 7.3 0.0 2.6 3 0 0 3 3 3 0 IncA protein Radical_SAM PF04055.16 gi|313125410|ref|YP_004035674.1| - 4e-12 46.6 0.0 7e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF457 PF04307.9 gi|313125411|ref|YP_004035675.1| - 3.2e-07 29.8 12.9 5.4e-07 29.0 8.9 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4149 PF13664.1 gi|313125411|ref|YP_004035675.1| - 1.1 9.3 7.5 0.078 13.0 1.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) DUF457 PF04307.9 gi|313125412|ref|YP_004035676.1| - 9.1e-10 38.0 12.4 1.4e-09 37.4 8.6 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|313125412|ref|YP_004035676.1| - 0.088 12.4 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C Methyltransf_31 PF13847.1 gi|313125413|ref|YP_004035677.1| - 3.7e-19 68.8 0.0 4.3e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313125413|ref|YP_004035677.1| - 1.5e-15 57.7 0.0 2.4e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313125413|ref|YP_004035677.1| - 1.1e-14 54.6 0.0 1.6e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125413|ref|YP_004035677.1| - 1.1e-13 51.5 0.0 1.6e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313125413|ref|YP_004035677.1| - 1.1e-12 48.0 0.1 1.7e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313125413|ref|YP_004035677.1| - 4.1e-11 42.5 0.0 5.6e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|313125413|ref|YP_004035677.1| - 2.8e-09 37.2 0.0 4.8e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313125413|ref|YP_004035677.1| - 5.3e-09 35.5 0.0 7.3e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|313125413|ref|YP_004035677.1| - 1.2e-08 34.8 0.0 1.4e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|313125413|ref|YP_004035677.1| - 2.6e-07 29.9 0.0 4.3e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.11 gi|313125413|ref|YP_004035677.1| - 1.7e-06 27.8 0.0 2.2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.10 gi|313125413|ref|YP_004035677.1| - 1.8e-06 27.2 0.0 2.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.14 gi|313125413|ref|YP_004035677.1| - 3.5e-05 23.4 0.0 5.9e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|313125413|ref|YP_004035677.1| - 9.6e-05 21.5 0.0 0.00013 21.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|313125413|ref|YP_004035677.1| - 0.00061 19.4 0.0 0.00085 19.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|313125413|ref|YP_004035677.1| - 0.00061 20.5 0.0 0.0011 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|313125413|ref|YP_004035677.1| - 0.0032 16.4 0.0 0.0036 16.2 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin PrmA PF06325.8 gi|313125413|ref|YP_004035677.1| - 0.0037 16.4 0.0 0.005 16.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|313125413|ref|YP_004035677.1| - 0.0049 15.8 0.0 0.0081 15.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) CMAS PF02353.15 gi|313125413|ref|YP_004035677.1| - 0.0075 15.3 0.0 0.0097 15.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|313125413|ref|YP_004035677.1| - 0.05 13.5 0.0 0.15 12.0 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF938 PF06080.7 gi|313125413|ref|YP_004035677.1| - 0.057 12.9 0.0 0.1 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Radical_SAM PF04055.16 gi|313125414|ref|YP_004035678.1| - 3.1e-17 63.2 0.0 5.3e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CofC PF01983.11 gi|313125415|ref|YP_004035679.1| - 4.5e-39 133.6 0.0 5.1e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|313125415|ref|YP_004035679.1| - 5.1e-05 23.3 1.5 6.9e-05 22.9 1.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF4398 PF14346.1 gi|313125416|ref|YP_004035680.1| - 3.6e-05 23.7 7.7 6.8e-05 22.8 5.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF1411 PF07199.6 gi|313125416|ref|YP_004035680.1| - 0.0029 17.0 0.3 0.0063 15.9 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1411) PTS_IIA PF02255.11 gi|313125416|ref|YP_004035680.1| - 0.013 15.3 1.2 0.027 14.3 0.9 1.5 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIA subunit CopD PF05425.8 gi|313125416|ref|YP_004035680.1| - 0.021 15.0 0.1 0.63 10.2 0.0 2.2 2 0 0 2 2 2 0 Copper resistance protein D DUF1771 PF08590.5 gi|313125416|ref|YP_004035680.1| - 0.031 14.2 1.4 0.031 14.2 1.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) PspA_IM30 PF04012.7 gi|313125416|ref|YP_004035680.1| - 0.035 13.4 4.6 0.06 12.7 3.2 1.4 1 0 0 1 1 1 0 PspA/IM30 family DUF2448 PF10476.4 gi|313125416|ref|YP_004035680.1| - 0.044 13.3 2.6 0.085 12.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function C-terminus (DUF2448) TrbC PF04956.8 gi|313125416|ref|YP_004035680.1| - 0.044 13.7 1.3 3.7 7.6 0.1 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF3708 PF12501.3 gi|313125416|ref|YP_004035680.1| - 0.23 11.2 4.1 0.16 11.8 0.9 1.9 2 0 0 2 2 2 0 Phosphate ATP-binding cassette transporter Lumazine_bd PF12870.2 gi|313125416|ref|YP_004035680.1| - 0.82 9.7 4.3 0.33 10.9 0.3 2.2 2 1 1 3 3 3 0 Lumazine-binding domain TPPK_C PF12555.3 gi|313125416|ref|YP_004035680.1| - 2.2 8.0 5.4 11 5.7 0.1 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Myco_arth_vir_N PF09610.5 gi|313125416|ref|YP_004035680.1| - 3.7 7.5 4.6 6.4 6.8 0.1 2.4 2 0 0 2 2 2 0 Mycoplasma virulence signal region (Myco_arth_vir_N) Tubulin PF00091.20 gi|313125417|ref|YP_004035681.1| - 8.3e-24 84.5 0.6 1.8e-23 83.5 0.0 1.8 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain NAD_binding_10 PF13460.1 gi|313125418|ref|YP_004035682.1| - 1.8e-30 106.3 0.0 2.2e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|313125418|ref|YP_004035682.1| - 2e-21 76.5 0.0 6.2e-21 74.9 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313125418|ref|YP_004035682.1| - 2.6e-15 55.8 0.0 1.6e-13 49.9 0.0 2.2 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313125418|ref|YP_004035682.1| - 2.6e-14 52.7 0.0 7.5e-08 31.5 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|313125418|ref|YP_004035682.1| - 2.9e-11 43.0 0.0 3.7e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|313125418|ref|YP_004035682.1| - 8.4e-07 28.1 0.0 0.0057 15.6 0.0 2.3 1 1 0 2 2 2 2 Male sterility protein Glyco_transf_4 PF13439.1 gi|313125418|ref|YP_004035682.1| - 4e-05 23.4 0.0 6.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Polysacc_synt_2 PF02719.10 gi|313125418|ref|YP_004035682.1| - 4.9e-05 22.3 0.2 0.00026 19.9 0.1 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_2 PF03446.10 gi|313125418|ref|YP_004035682.1| - 0.00013 21.8 0.1 0.00093 19.0 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|313125418|ref|YP_004035682.1| - 0.00074 19.8 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|313125418|ref|YP_004035682.1| - 0.0022 17.9 0.0 0.0079 16.1 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase DapB_N PF01113.15 gi|313125418|ref|YP_004035682.1| - 0.0061 16.4 0.0 0.0099 15.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.16 gi|313125418|ref|YP_004035682.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glyco_trans_4_4 PF13579.1 gi|313125418|ref|YP_004035682.1| - 0.015 15.4 0.0 0.025 14.6 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain KR PF08659.5 gi|313125418|ref|YP_004035682.1| - 0.023 14.3 0.0 0.34 10.5 0.0 2.1 2 0 0 2 2 2 0 KR domain Pyr_redox PF00070.22 gi|313125418|ref|YP_004035682.1| - 0.023 15.1 0.0 0.063 13.6 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313125418|ref|YP_004035682.1| - 0.048 12.5 0.0 0.075 11.9 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ELFV_dehydrog PF00208.16 gi|313125418|ref|YP_004035682.1| - 0.051 13.1 0.1 0.12 11.8 0.0 1.7 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|313125418|ref|YP_004035682.1| - 0.061 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|313125418|ref|YP_004035682.1| - 0.079 12.3 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DFP PF04127.10 gi|313125418|ref|YP_004035682.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein FAD_binding_3 PF01494.14 gi|313125418|ref|YP_004035682.1| - 0.14 11.2 0.2 0.27 10.2 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain ApbA PF02558.11 gi|313125418|ref|YP_004035682.1| - 0.14 11.6 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thymidylate_kin PF02223.12 gi|313125419|ref|YP_004035683.1| - 3.1e-38 131.0 0.0 3.8e-38 130.7 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|313125419|ref|YP_004035683.1| - 3.5e-06 27.3 0.0 6.5e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313125419|ref|YP_004035683.1| - 5.1e-06 26.4 0.0 8.7e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|313125419|ref|YP_004035683.1| - 0.0002 21.3 0.2 0.00025 21.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313125419|ref|YP_004035683.1| - 0.036 14.8 0.2 0.098 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain PIG-Y PF15159.1 gi|313125420|ref|YP_004035684.1| - 0.21 11.8 5.5 0.37 11.0 3.8 1.4 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y YqhR PF11085.3 gi|313125420|ref|YP_004035684.1| - 0.3 10.6 5.9 0.32 10.5 4.1 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR ABC2_membrane_4 PF12730.2 gi|313125420|ref|YP_004035684.1| - 6 5.9 10.5 7.3 5.6 7.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2628 PF10947.3 gi|313125420|ref|YP_004035684.1| - 6.9 6.5 6.7 16 5.3 4.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) E1_dh PF00676.15 gi|313125421|ref|YP_004035685.1| - 9.4e-75 251.0 0.0 1.2e-74 250.7 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|313125421|ref|YP_004035685.1| - 2.8e-07 29.6 0.0 3.6e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|313125421|ref|YP_004035685.1| - 0.00013 20.9 0.0 0.0002 20.3 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|313125421|ref|YP_004035685.1| - 0.0017 17.9 1.3 0.024 14.1 0.2 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP_endonuc_2 PF01261.19 gi|313125421|ref|YP_004035685.1| - 0.05 12.8 2.1 2.7 7.2 1.5 2.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel AsnC_trans_reg PF01037.16 gi|313125423|ref|YP_004035687.1| - 3.8e-11 42.5 0.2 4.2e-11 42.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family TrkA_N PF02254.13 gi|313125424|ref|YP_004035688.1| - 3.3e-25 88.3 0.9 4.3e-25 87.9 0.3 1.4 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.16 gi|313125424|ref|YP_004035688.1| - 1.9e-07 30.5 1.0 4.5e-07 29.3 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|313125424|ref|YP_004035688.1| - 1.7e-06 28.2 0.3 3.5e-06 27.1 0.1 1.7 2 0 0 2 2 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|313125424|ref|YP_004035688.1| - 4.6e-05 22.8 0.0 8.9e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|313125424|ref|YP_004035688.1| - 0.00014 22.2 0.1 0.00033 21.0 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|313125424|ref|YP_004035688.1| - 0.00022 20.8 0.1 0.0004 19.9 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|313125424|ref|YP_004035688.1| - 0.00032 20.7 0.6 0.00049 20.1 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|313125424|ref|YP_004035688.1| - 0.0013 18.3 0.1 0.0033 17.1 0.0 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|313125424|ref|YP_004035688.1| - 0.0017 18.3 0.2 0.0033 17.3 0.2 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313125424|ref|YP_004035688.1| - 0.0024 16.8 0.2 0.0034 16.3 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase IlvN PF07991.7 gi|313125424|ref|YP_004035688.1| - 0.0027 17.0 0.1 0.015 14.7 0.0 2.2 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|313125424|ref|YP_004035688.1| - 0.0042 16.9 0.1 0.36 10.6 0.0 2.5 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|313125424|ref|YP_004035688.1| - 0.0084 15.5 0.1 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA CutC PF03932.9 gi|313125424|ref|YP_004035688.1| - 0.013 14.7 0.0 0.027 13.7 0.0 1.5 1 0 0 1 1 1 0 CutC family NAD_binding_8 PF13450.1 gi|313125424|ref|YP_004035688.1| - 0.018 15.0 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|313125424|ref|YP_004035688.1| - 0.021 13.8 0.1 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Saccharop_dh PF03435.13 gi|313125424|ref|YP_004035688.1| - 0.023 13.6 0.1 0.026 13.4 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|313125424|ref|YP_004035688.1| - 0.042 14.3 0.1 0.1 13.0 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold XdhC_C PF13478.1 gi|313125424|ref|YP_004035688.1| - 0.048 13.9 0.0 0.13 12.5 0.0 1.7 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|313125424|ref|YP_004035688.1| - 0.096 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AsnC_trans_reg PF01037.16 gi|313125425|ref|YP_004035689.1| - 2.1e-09 36.9 0.2 2.7e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 AsnC family HAMP PF00672.20 gi|313125425|ref|YP_004035689.1| - 0.0047 17.0 0.0 0.0062 16.7 0.0 1.2 1 0 0 1 1 1 1 HAMP domain EF1_GNE PF00736.14 gi|313125425|ref|YP_004035689.1| - 0.012 15.3 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 EF-1 guanine nucleotide exchange domain GYD PF08734.6 gi|313125425|ref|YP_004035689.1| - 0.018 14.7 0.3 0.019 14.6 0.2 1.1 1 0 0 1 1 1 0 GYD domain DUF2154 PF09922.4 gi|313125425|ref|YP_004035689.1| - 0.12 12.0 0.1 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Cell wall-active antibiotics response protein (DUF2154) MCPsignal PF00015.16 gi|313125427|ref|YP_004035691.1| - 2.9e-41 141.3 68.3 5.5e-39 133.9 25.8 4.6 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313125427|ref|YP_004035691.1| - 1.3e-11 44.5 1.4 1.3e-11 44.5 1.0 5.5 6 0 0 6 6 5 2 HAMP domain DUF948 PF06103.6 gi|313125427|ref|YP_004035691.1| - 0.00062 19.5 25.9 0.096 12.5 0.3 5.4 5 1 1 6 6 6 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|313125427|ref|YP_004035691.1| - 0.00073 19.6 20.3 0.066 13.3 0.0 5.2 3 2 1 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF677 PF05055.7 gi|313125427|ref|YP_004035691.1| - 0.006 15.3 15.9 0.052 12.2 2.9 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF677) Cauli_AT PF03233.8 gi|313125427|ref|YP_004035691.1| - 0.42 10.3 4.6 11 5.7 0.2 4.1 3 2 1 4 4 4 0 Aphid transmission protein Syntaxin-6_N PF09177.6 gi|313125427|ref|YP_004035691.1| - 0.57 10.6 26.6 0.9 9.9 0.8 5.6 2 2 3 5 5 5 0 Syntaxin 6, N-terminal DUF1664 PF07889.7 gi|313125427|ref|YP_004035691.1| - 1.4 8.7 18.4 3 7.6 0.8 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|313125427|ref|YP_004035691.1| - 4.4 4.7 14.1 0.85 7.0 6.7 1.8 1 1 1 2 2 2 0 Prominin IncA PF04156.9 gi|313125427|ref|YP_004035691.1| - 5.6 6.5 25.5 11 5.5 5.5 4.7 3 1 0 4 4 4 0 IncA protein Tweety PF04906.8 gi|313125427|ref|YP_004035691.1| - 6.6 5.0 12.5 2.3 6.5 0.5 3.5 3 1 1 4 4 4 0 Tweety V_ATPase_I PF01496.14 gi|313125427|ref|YP_004035691.1| - 8.4 4.1 14.9 0.49 8.1 2.7 2.7 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family PEMT PF04191.8 gi|313125428|ref|YP_004035692.1| - 0.1 12.7 0.2 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Phospholipid methyltransferase CARDB PF07705.6 gi|313125429|ref|YP_004035693.1| - 0.0092 16.0 0.1 0.025 14.6 0.1 1.7 1 0 0 1 1 1 1 CARDB SBP_bac_5 PF00496.17 gi|313125430|ref|YP_004035694.1| - 2.8e-68 230.4 2.6 3.5e-68 230.1 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313125430|ref|YP_004035694.1| - 0.072 13.1 2.2 0.13 12.3 1.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1090 PF06476.7 gi|313125430|ref|YP_004035694.1| - 0.19 11.4 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) Fer4_15 PF13459.1 gi|313125431|ref|YP_004035695.1| - 0.00028 21.3 0.6 0.00046 20.6 0.4 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Pro_isomerase PF00160.16 gi|313125432|ref|YP_004035696.1| - 1.5e-50 171.4 0.0 1.7e-50 171.2 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AstE_AspA PF04952.9 gi|313125433|ref|YP_004035697.1| - 2.4e-40 138.2 0.1 2.7e-40 138.0 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|313125433|ref|YP_004035697.1| - 8e-06 25.6 0.0 0.07 12.7 0.0 2.1 2 0 0 2 2 2 2 Zinc carboxypeptidase Peptidase_M20 PF01546.23 gi|313125434|ref|YP_004035698.1| - 7e-19 68.0 12.9 1.4e-18 67.0 8.9 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|313125434|ref|YP_004035698.1| - 7.3e-14 51.4 0.4 1.6e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Glycos_transf_3 PF00591.16 gi|313125435|ref|YP_004035699.1| - 1.2e-31 110.0 0.0 3.3e-31 108.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|313125435|ref|YP_004035699.1| - 3.1e-13 49.0 0.1 3.1e-13 49.0 0.1 2.4 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain HTH_AsnC-type PF13404.1 gi|313125436|ref|YP_004035700.1| - 4.6e-09 35.6 1.6 4.6e-05 22.8 0.0 3.0 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|313125436|ref|YP_004035700.1| - 0.014 14.7 0.0 3.5 7.0 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF1793 PF08760.6 gi|313125436|ref|YP_004035700.1| - 0.1 12.4 0.1 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1793) DUF3070 PF11270.3 gi|313125437|ref|YP_004035701.1| - 0.17 11.6 1.6 0.6 9.9 1.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3070) TMEM154 PF15102.1 gi|313125437|ref|YP_004035701.1| - 0.44 10.2 3.5 0.69 9.6 2.4 1.3 1 0 0 1 1 1 0 TMEM154 protein family SH3_6 PF12913.2 gi|313125438|ref|YP_004035702.1| - 0.049 12.8 0.4 0.4 9.9 0.0 2.2 1 1 1 2 2 2 0 SH3 domain of the SH3b1 type QueT PF06177.6 gi|313125439|ref|YP_004035703.1| - 0.04 13.8 1.0 0.045 13.7 0.7 1.1 1 0 0 1 1 1 0 QueT transporter DUF2518 PF10726.4 gi|313125439|ref|YP_004035703.1| - 0.38 10.2 2.2 0.55 9.7 1.5 1.3 1 0 0 1 1 1 0 Protein of function (DUF2518) PHP_C PF13263.1 gi|313125440|ref|YP_004035704.1| - 2.4e-20 71.7 0.1 8.9e-20 69.9 0.1 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|313125440|ref|YP_004035704.1| - 2.9e-16 59.7 0.1 1.4e-15 57.5 0.1 1.9 1 1 0 1 1 1 1 PHP domain Rieske PF00355.21 gi|313125441|ref|YP_004035705.1| - 3.5e-12 45.7 0.1 7.1e-12 44.7 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|313125441|ref|YP_004035705.1| - 2.4e-10 40.0 0.0 4.4e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Amino_oxidase PF01593.19 gi|313125442|ref|YP_004035706.1| - 1.6e-16 60.4 2.9 2.8e-09 36.5 0.6 2.0 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|313125442|ref|YP_004035706.1| - 3.2e-14 52.6 0.3 6.4e-14 51.7 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|313125442|ref|YP_004035706.1| - 5e-08 33.2 0.3 3.9e-07 30.3 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313125442|ref|YP_004035706.1| - 1.2e-06 27.7 5.3 1.6e-05 24.0 1.2 2.3 1 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313125442|ref|YP_004035706.1| - 1.4e-06 28.3 1.3 7.7e-06 25.9 0.9 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313125442|ref|YP_004035706.1| - 3.1e-05 23.2 0.2 5e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|313125442|ref|YP_004035706.1| - 0.0002 21.6 1.8 0.0007 19.9 0.5 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|313125442|ref|YP_004035706.1| - 0.00031 20.2 0.1 0.038 13.4 0.1 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|313125442|ref|YP_004035706.1| - 0.0013 17.8 0.9 0.0021 17.2 0.7 1.3 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.13 gi|313125442|ref|YP_004035706.1| - 0.0016 18.1 0.2 0.0025 17.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|313125442|ref|YP_004035706.1| - 0.0062 15.4 5.4 0.011 14.6 3.2 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|313125442|ref|YP_004035706.1| - 0.0089 14.5 3.0 0.012 14.0 1.6 1.5 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|313125442|ref|YP_004035706.1| - 0.0099 14.9 2.7 0.041 12.9 1.9 1.9 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|313125442|ref|YP_004035706.1| - 0.012 14.4 2.6 0.027 13.3 1.6 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|313125442|ref|YP_004035706.1| - 0.021 14.5 0.1 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Rossmann-like PF10727.4 gi|313125442|ref|YP_004035706.1| - 0.026 14.2 0.1 0.054 13.2 0.1 1.6 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_7 PF13241.1 gi|313125442|ref|YP_004035706.1| - 0.085 13.1 0.1 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|313125442|ref|YP_004035706.1| - 0.1 12.1 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Malic_M PF03949.10 gi|313125442|ref|YP_004035706.1| - 0.19 11.2 1.1 5.1 6.5 0.4 2.1 2 0 0 2 2 2 0 Malic enzyme, NAD binding domain Shikimate_DH PF01488.15 gi|313125442|ref|YP_004035706.1| - 0.2 11.7 0.7 0.38 10.8 0.5 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HAD_2 PF13419.1 gi|313125443|ref|YP_004035707.1| - 4.6e-17 62.8 0.7 5.8e-17 62.4 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125443|ref|YP_004035707.1| - 1.7e-12 46.8 0.0 3.2e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313125443|ref|YP_004035707.1| - 1.2e-07 32.3 0.2 1.8e-06 28.4 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|313125443|ref|YP_004035707.1| - 0.0075 16.4 0.0 0.012 15.8 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase KaiC PF06745.8 gi|313125445|ref|YP_004035709.1| - 2.8e-42 144.3 0.0 3.2e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|313125445|ref|YP_004035709.1| - 2.7e-09 36.7 0.0 3.6e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|313125445|ref|YP_004035709.1| - 2e-06 27.4 0.1 2.2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain GvpD PF07088.6 gi|313125445|ref|YP_004035709.1| - 2.3e-06 26.2 0.0 4.1e-06 25.3 0.0 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|313125445|ref|YP_004035709.1| - 5.8e-06 25.9 0.0 1.3e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|313125445|ref|YP_004035709.1| - 1.1e-05 25.6 0.0 2.8e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain MEDS PF14417.1 gi|313125445|ref|YP_004035709.1| - 1.3e-05 24.3 0.0 2.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RecA PF00154.16 gi|313125445|ref|YP_004035709.1| - 6.4e-05 22.1 0.1 0.00022 20.3 0.0 1.8 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|313125445|ref|YP_004035709.1| - 9.2e-05 22.3 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|313125445|ref|YP_004035709.1| - 0.00039 19.9 0.0 0.00073 19.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|313125445|ref|YP_004035709.1| - 0.0011 18.8 0.0 0.0015 18.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313125445|ref|YP_004035709.1| - 0.0019 18.9 0.0 0.0024 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|313125445|ref|YP_004035709.1| - 0.0021 17.8 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|313125445|ref|YP_004035709.1| - 0.004 16.1 0.2 0.35 9.7 0.1 2.1 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|313125445|ref|YP_004035709.1| - 0.0045 17.2 0.0 0.0072 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|313125445|ref|YP_004035709.1| - 0.0053 15.6 0.0 0.0075 15.1 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain cobW PF02492.14 gi|313125445|ref|YP_004035709.1| - 0.0074 15.7 0.0 0.014 14.8 0.0 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|313125445|ref|YP_004035709.1| - 0.01 15.7 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|313125445|ref|YP_004035709.1| - 0.013 14.5 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|313125445|ref|YP_004035709.1| - 0.017 15.3 0.0 0.034 14.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313125445|ref|YP_004035709.1| - 0.019 14.6 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|313125445|ref|YP_004035709.1| - 0.039 13.9 0.0 0.094 12.6 0.0 1.6 2 1 0 2 2 2 0 AAA domain DAP3 PF10236.4 gi|313125445|ref|YP_004035709.1| - 0.066 12.1 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 KTI12 PF08433.5 gi|313125445|ref|YP_004035709.1| - 0.07 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 UPF0079 PF02367.12 gi|313125445|ref|YP_004035709.1| - 0.077 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ArgK PF03308.11 gi|313125445|ref|YP_004035709.1| - 0.08 11.7 0.0 0.19 10.5 0.0 1.6 1 1 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|313125445|ref|YP_004035709.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.5 1 1 0 1 1 1 0 NTPase ABC_tran PF00005.22 gi|313125445|ref|YP_004035709.1| - 0.13 12.5 0.0 0.19 11.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter SelR PF01641.13 gi|313125447|ref|YP_004035711.1| - 9.3e-50 167.4 0.0 1.1e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 SelR domain DZR PF12773.2 gi|313125447|ref|YP_004035711.1| - 0.011 15.5 1.9 0.17 11.7 1.3 2.3 1 1 1 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|313125447|ref|YP_004035711.1| - 0.053 13.8 1.7 1.5 9.1 1.2 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Yippee-Mis18 PF03226.9 gi|313125447|ref|YP_004035711.1| - 0.064 13.3 0.3 0.21 11.6 0.2 1.8 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Prim_Zn_Ribbon PF08273.7 gi|313125447|ref|YP_004035711.1| - 0.09 12.8 3.9 0.44 10.6 0.3 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF2072 PF09845.4 gi|313125447|ref|YP_004035711.1| - 0.48 10.3 1.8 1.3 8.9 0.9 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|313125447|ref|YP_004035711.1| - 0.55 9.7 5.2 4 7.0 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|313125447|ref|YP_004035711.1| - 0.58 9.7 6.9 3.5 7.2 0.3 2.8 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|313125447|ref|YP_004035711.1| - 4.8 6.5 11.3 1.1 8.5 0.1 3.1 3 1 1 4 4 4 0 TFIIB zinc-binding MCPsignal PF00015.16 gi|313125449|ref|YP_004035713.1| - 6.9e-49 166.2 56.6 5.9e-48 163.2 26.7 3.6 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313125449|ref|YP_004035713.1| - 1.1e-13 51.1 17.6 7.2e-13 48.5 0.9 4.7 5 0 0 5 5 5 2 HAMP domain DUF2450 PF10475.4 gi|313125449|ref|YP_004035713.1| - 0.0053 15.6 0.9 0.017 14.0 0.6 1.8 1 0 0 1 1 1 1 Protein of unknown function N-terminal domain (DUF2450) AAA_13 PF13166.1 gi|313125449|ref|YP_004035713.1| - 0.17 10.3 17.8 1.1 7.6 5.8 2.1 1 1 1 2 2 2 0 AAA domain ApoO PF09769.4 gi|313125449|ref|YP_004035713.1| - 0.2 11.3 5.3 0.14 11.8 0.8 2.9 3 1 1 4 4 4 0 Apolipoprotein O TPPK_C PF12555.3 gi|313125449|ref|YP_004035713.1| - 0.32 10.7 6.0 0.12 12.1 0.9 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Laminin_II PF06009.7 gi|313125449|ref|YP_004035713.1| - 0.7 9.6 34.2 0.016 14.9 2.5 5.1 2 2 2 5 5 5 0 Laminin Domain II BLOC1_2 PF10046.4 gi|313125449|ref|YP_004035713.1| - 0.92 9.6 18.9 5.9 7.0 0.4 5.7 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Nup54 PF13874.1 gi|313125449|ref|YP_004035713.1| - 1.2 8.7 12.7 1.2 8.7 0.9 3.5 3 1 1 4 4 4 0 Nucleoporin complex subunit 54 NEP PF10167.4 gi|313125449|ref|YP_004035713.1| - 1.6 8.4 9.9 9.3 5.9 0.1 4.2 4 1 1 5 5 5 0 Uncharacterised conserved protein Fzo_mitofusin PF04799.8 gi|313125449|ref|YP_004035713.1| - 3 7.1 6.4 2.4 7.5 0.1 3.7 3 1 1 4 4 4 0 fzo-like conserved region DUF3407 PF11887.3 gi|313125449|ref|YP_004035713.1| - 3.1 7.0 16.9 0.2 10.9 1.0 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF3407) CK2S PF15011.1 gi|313125449|ref|YP_004035713.1| - 4.1 7.1 11.3 9.4 5.9 1.6 4.0 3 2 1 4 4 4 0 Casein Kinase 2 substrate Pyridox_oxidase PF01243.15 gi|313125450|ref|YP_004035714.1| - 3.8e-15 55.6 0.0 3.2e-14 52.6 0.0 2.0 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|313125450|ref|YP_004035714.1| - 5.8e-10 39.1 0.1 7.4e-10 38.8 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF385 PF04075.9 gi|313125450|ref|YP_004035714.1| - 0.026 14.5 0.1 0.044 13.7 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF385) EcKinase PF02958.15 gi|313125451|ref|YP_004035715.1| - 0.075 12.1 0.3 0.37 9.8 0.2 1.9 1 1 0 1 1 1 0 Ecdysteroid kinase FAA_hydrolase PF01557.13 gi|313125453|ref|YP_004035717.1| - 1.8e-47 161.6 0.0 2.3e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF393 PF04134.7 gi|313125454|ref|YP_004035718.1| - 4.7e-12 47.0 0.2 5.7e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DUF4225 PF13988.1 gi|313125455|ref|YP_004035719.1| - 0.059 12.8 2.2 0.061 12.7 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) DUF308 PF03729.8 gi|313125455|ref|YP_004035719.1| - 0.35 10.8 9.2 0.63 10.0 6.4 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3185 PF11381.3 gi|313125455|ref|YP_004035719.1| - 0.82 9.4 7.7 5.9 6.7 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF1469 PF07332.6 gi|313125455|ref|YP_004035719.1| - 1.6 8.4 9.0 2 8.1 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF202 PF02656.10 gi|313125455|ref|YP_004035719.1| - 1.9 8.7 4.7 3 8.1 3.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) TspO_MBR PF03073.10 gi|313125456|ref|YP_004035720.1| - 0.11 12.0 0.2 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 TspO/MBR family SPW PF03779.9 gi|313125457|ref|YP_004035721.1| - 5.2e-13 48.1 12.4 1.6e-08 33.8 1.6 2.3 2 0 0 2 2 2 2 SPW repeat Ion_trans_2 PF07885.11 gi|313125458|ref|YP_004035722.1| - 1.4e-15 56.7 5.4 1.4e-15 56.7 3.7 2.1 3 0 0 3 3 2 1 Ion channel Ion_trans PF00520.26 gi|313125458|ref|YP_004035722.1| - 6.3e-14 51.6 10.6 1.1e-13 50.8 7.3 1.4 1 0 0 1 1 1 1 Ion transport protein zf-ribbon_3 PF13248.1 gi|313125458|ref|YP_004035722.1| - 9.6e-06 24.6 1.9 1.5e-05 24.0 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|313125458|ref|YP_004035722.1| - 0.0013 18.5 0.4 0.0019 17.9 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|313125458|ref|YP_004035722.1| - 0.0041 16.5 3.2 0.0065 15.9 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF962 PF06127.6 gi|313125458|ref|YP_004035722.1| - 0.067 13.0 0.5 0.35 10.7 0.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF962) Lig_chan PF00060.21 gi|313125458|ref|YP_004035722.1| - 0.079 12.6 1.1 0.18 11.5 0.8 1.5 1 0 0 1 1 1 0 Ligand-gated ion channel Auto_anti-p27 PF06677.7 gi|313125458|ref|YP_004035722.1| - 0.11 12.2 0.7 3.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.7 gi|313125458|ref|YP_004035722.1| - 0.22 10.8 2.1 1.3 8.3 1.4 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|313125458|ref|YP_004035722.1| - 0.4 10.2 3.0 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313125458|ref|YP_004035722.1| - 0.43 10.2 2.4 4.2 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313125458|ref|YP_004035722.1| - 0.69 9.6 3.2 1.9 8.2 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Oxidored_q5_N PF01059.12 gi|313125458|ref|YP_004035722.1| - 0.98 9.3 4.0 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Zn_Tnp_IS1595 PF12760.2 gi|313125458|ref|YP_004035722.1| - 1.8 8.4 4.7 5.3 6.9 3.3 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|313125458|ref|YP_004035722.1| - 5.4 6.6 6.1 8.5 5.9 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain End3 PF12761.2 gi|313125459|ref|YP_004035723.1| - 0.00013 21.7 1.6 0.0002 21.0 1.1 1.2 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 ADIP PF11559.3 gi|313125459|ref|YP_004035723.1| - 0.028 14.2 2.1 0.056 13.3 1.4 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding phiKZ_IP PF12699.2 gi|313125459|ref|YP_004035723.1| - 0.03 13.2 0.3 0.041 12.8 0.2 1.3 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins Pox_A_type_inc PF04508.7 gi|313125459|ref|YP_004035723.1| - 0.088 12.6 0.7 0.32 10.8 0.5 2.0 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat Bys1 PF04681.7 gi|313125459|ref|YP_004035723.1| - 0.11 12.2 0.2 0.19 11.4 0.1 1.4 1 1 0 1 1 1 0 Blastomyces yeast-phase-specific protein DUF4094 PF13334.1 gi|313125459|ref|YP_004035723.1| - 0.12 12.7 0.7 0.12 12.7 0.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) Uds1 PF15456.1 gi|313125459|ref|YP_004035723.1| - 0.5 10.3 4.4 1.5 8.8 2.9 2.0 1 1 0 1 1 1 0 Up-regulated During Septation THOC7 PF05615.8 gi|313125459|ref|YP_004035723.1| - 0.84 9.9 7.5 0.12 12.6 2.1 1.9 2 1 0 2 2 2 0 Tho complex subunit 7 DoxX PF07681.7 gi|313125460|ref|YP_004035724.1| - 2.6e-07 30.9 9.2 2.6e-07 30.9 6.4 1.7 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.1 gi|313125460|ref|YP_004035724.1| - 0.00078 19.3 3.5 0.0012 18.7 2.3 1.4 1 1 0 1 1 1 1 DoxX-like family DUF3681 PF12442.3 gi|313125460|ref|YP_004035724.1| - 0.016 15.3 0.9 0.084 13.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) Tetraspannin PF00335.15 gi|313125460|ref|YP_004035724.1| - 0.074 12.3 2.2 0.57 9.4 1.5 1.9 1 1 0 1 1 1 0 Tetraspanin family PIRT PF15099.1 gi|313125460|ref|YP_004035724.1| - 0.22 10.7 0.0 0.22 10.7 0.0 2.1 1 1 2 3 3 3 0 Phosphoinositide-interacting protein family DUF4131 PF13567.1 gi|313125460|ref|YP_004035724.1| - 4 6.8 5.5 9.2 5.6 3.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Claudin_2 PF13903.1 gi|313125460|ref|YP_004035724.1| - 5.5 6.6 6.0 24 4.5 3.9 2.0 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction CMD PF02627.15 gi|313125461|ref|YP_004035725.1| - 1.2e-07 31.4 1.7 1.6e-07 31.0 1.1 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PhageMin_Tail PF10145.4 gi|313125461|ref|YP_004035725.1| - 0.051 13.2 0.9 0.051 13.2 0.6 2.0 1 1 1 2 2 2 0 Phage-related minor tail protein HxlR PF01638.12 gi|313125462|ref|YP_004035726.1| - 9.1e-23 79.7 0.0 1.2e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|313125462|ref|YP_004035726.1| - 0.00032 20.3 0.0 0.00049 19.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|313125462|ref|YP_004035726.1| - 0.0013 19.0 0.0 0.0021 18.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313125462|ref|YP_004035726.1| - 0.0019 18.1 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|313125462|ref|YP_004035726.1| - 0.014 15.1 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|313125462|ref|YP_004035726.1| - 0.023 14.6 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein HTH_5 PF01022.15 gi|313125462|ref|YP_004035726.1| - 0.026 14.1 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|313125462|ref|YP_004035726.1| - 0.027 14.2 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GST_N_2 PF13409.1 gi|313125463|ref|YP_004035727.1| - 4.3e-17 61.8 0.0 1e-15 57.4 0.0 2.4 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|313125463|ref|YP_004035727.1| - 1.1e-13 50.8 0.2 2.5e-13 49.7 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|313125463|ref|YP_004035727.1| - 1.2e-08 34.7 0.0 1.9e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|313125463|ref|YP_004035727.1| - 1e-07 32.2 0.0 1.9e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|313125463|ref|YP_004035727.1| - 0.00064 19.9 0.1 0.026 14.7 0.0 3.0 3 1 0 3 3 3 1 Glutathione S-transferase, N-terminal domain Glyoxalase_2 PF12681.2 gi|313125464|ref|YP_004035728.1| - 1.4e-11 44.9 0.3 1.8e-11 44.5 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313125464|ref|YP_004035728.1| - 2.9e-08 33.7 0.7 3.9e-08 33.3 0.5 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313125464|ref|YP_004035728.1| - 0.00062 19.7 0.1 0.00084 19.3 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF3313 PF11769.3 gi|313125465|ref|YP_004035729.1| - 0.018 14.4 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) DUF4624 PF15417.1 gi|313125465|ref|YP_004035729.1| - 0.12 11.9 0.4 0.16 11.5 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4624) PKD PF00801.15 gi|313125465|ref|YP_004035729.1| - 0.14 11.8 0.9 45 3.8 0.1 2.9 2 1 1 3 3 3 0 PKD domain Reprolysin_3 PF13582.1 gi|313125466|ref|YP_004035730.1| - 0.00029 21.3 1.6 0.00032 21.2 0.5 1.7 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|313125466|ref|YP_004035730.1| - 0.00064 19.3 2.0 0.00086 18.8 1.4 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|313125466|ref|YP_004035730.1| - 0.00068 19.7 4.8 0.0011 19.0 3.3 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|313125466|ref|YP_004035730.1| - 0.0011 18.9 3.3 0.0016 18.3 2.3 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 DDE_Tnp_IS240 PF13610.1 gi|313125467|ref|YP_004035731.1| - 1.3e-23 83.4 0.0 2.5e-23 82.6 0.0 1.5 2 0 0 2 2 2 1 DDE domain rve PF00665.21 gi|313125467|ref|YP_004035731.1| - 0.0042 17.1 0.1 0.011 15.8 0.0 1.9 1 1 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313125467|ref|YP_004035731.1| - 0.0078 15.4 0.1 0.017 14.3 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|313125467|ref|YP_004035731.1| - 0.031 14.0 0.1 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 DDE superfamily endonuclease DUF1115 PF06544.7 gi|313125467|ref|YP_004035731.1| - 0.072 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) HTH_28 PF13518.1 gi|313125467|ref|YP_004035731.1| - 0.1 12.6 0.0 0.44 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Spindle_Spc25 PF08234.7 gi|313125470|ref|YP_004035734.1| - 0.032 14.2 0.1 4.3 7.4 0.0 2.1 1 1 1 2 2 2 0 Chromosome segregation protein Spc25 DUF4070 PF13282.1 gi|313125470|ref|YP_004035734.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4070) MscS_porin PF12795.2 gi|313125472|ref|YP_004035736.1| - 0.0024 17.2 1.9 0.0024 17.2 1.3 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain DUF2250 PF10007.4 gi|313125472|ref|YP_004035736.1| - 0.005 16.7 1.1 0.011 15.5 0.3 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|313125472|ref|YP_004035736.1| - 0.01 16.1 0.1 0.033 14.4 0.1 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4065 PF13274.1 gi|313125472|ref|YP_004035736.1| - 0.023 15.3 0.3 0.036 14.7 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) DUF2120 PF09893.4 gi|313125472|ref|YP_004035736.1| - 0.027 14.4 1.9 0.092 12.6 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) DUF972 PF06156.8 gi|313125472|ref|YP_004035736.1| - 0.044 14.1 6.5 0.51 10.7 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DUF494 PF04361.8 gi|313125472|ref|YP_004035736.1| - 0.064 12.9 0.3 0.086 12.5 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF494) Vac_Fusion PF02346.11 gi|313125472|ref|YP_004035736.1| - 0.082 12.3 0.4 0.27 10.6 0.3 1.8 1 0 0 1 1 1 0 Chordopoxvirus fusion protein Prefoldin PF02996.12 gi|313125472|ref|YP_004035736.1| - 0.6 9.7 3.7 12 5.6 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit RasGAP_C PF03836.10 gi|313125472|ref|YP_004035736.1| - 0.73 9.5 5.4 8.4 6.0 0.5 2.7 2 2 1 3 3 3 0 RasGAP C-terminus DUF2746 PF10874.3 gi|313125472|ref|YP_004035736.1| - 4 7.7 5.6 4.2 7.6 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2746) Tropomyosin_1 PF12718.2 gi|313125472|ref|YP_004035736.1| - 4.5 7.1 11.3 4.1 7.2 2.8 2.7 1 1 1 2 2 2 0 Tropomyosin like Spc7 PF08317.6 gi|313125474|ref|YP_004035738.1| - 2.5e-07 29.7 40.9 7.2e-06 24.8 9.4 2.2 2 0 0 2 2 2 2 Spc7 kinetochore protein AAA_13 PF13166.1 gi|313125474|ref|YP_004035738.1| - 2.6e-07 29.5 14.2 2.6e-07 29.5 9.8 2.1 1 1 1 2 2 2 1 AAA domain Atg14 PF10186.4 gi|313125474|ref|YP_004035738.1| - 2.8e-06 26.5 11.1 2.8e-06 26.5 7.7 2.8 2 1 0 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|313125474|ref|YP_004035738.1| - 4.5e-05 23.2 2.6 4.5e-05 23.2 1.8 3.9 3 1 1 4 4 4 1 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|313125474|ref|YP_004035738.1| - 0.00016 21.6 8.0 0.00016 21.6 5.5 4.7 3 2 3 6 6 5 1 Seryl-tRNA synthetase N-terminal domain TMF_DNA_bd PF12329.3 gi|313125474|ref|YP_004035738.1| - 0.00033 20.3 10.9 0.00033 20.3 7.5 4.7 2 2 2 4 4 4 1 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|313125474|ref|YP_004035738.1| - 0.00052 19.6 23.9 0.00052 19.6 16.6 3.1 1 1 0 2 2 2 1 IncA protein SbcCD_C PF13558.1 gi|313125474|ref|YP_004035738.1| - 0.00073 19.4 0.0 0.0021 17.9 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Baculo_PEP_C PF04513.7 gi|313125474|ref|YP_004035738.1| - 0.00077 19.2 0.6 0.00077 19.2 0.4 3.7 2 2 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|313125474|ref|YP_004035738.1| - 0.0013 18.5 31.8 0.039 13.7 1.7 4.2 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|313125474|ref|YP_004035738.1| - 0.0031 17.8 20.9 0.0031 17.8 14.5 3.5 2 2 0 2 2 1 1 AAA domain CK2S PF15011.1 gi|313125474|ref|YP_004035738.1| - 0.0033 17.2 0.1 0.0033 17.2 0.1 3.8 3 2 0 3 3 3 1 Casein Kinase 2 substrate FdhE PF04216.7 gi|313125474|ref|YP_004035738.1| - 0.0037 17.0 0.3 0.0037 17.0 0.2 2.4 1 1 0 2 2 2 1 Protein involved in formate dehydrogenase formation DUF2968 PF11180.3 gi|313125474|ref|YP_004035738.1| - 0.0041 16.5 5.8 0.0041 16.5 4.0 3.3 2 2 1 3 3 2 1 Protein of unknown function (DUF2968) DUF4164 PF13747.1 gi|313125474|ref|YP_004035738.1| - 0.014 15.4 5.5 0.014 15.4 3.8 4.6 3 1 1 4 4 4 0 Domain of unknown function (DUF4164) Elf1 PF05129.8 gi|313125474|ref|YP_004035738.1| - 0.015 15.0 0.9 0.031 13.9 0.6 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Myosin_tail_1 PF01576.14 gi|313125474|ref|YP_004035738.1| - 0.049 11.3 54.5 0.16 9.6 37.8 1.8 1 1 0 1 1 1 0 Myosin tail zf-Di19 PF05605.7 gi|313125474|ref|YP_004035738.1| - 0.059 13.5 2.2 2.8 8.1 0.0 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding DUF342 PF03961.8 gi|313125474|ref|YP_004035738.1| - 0.067 11.5 32.4 0.065 11.6 8.7 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF342) Reo_sigmaC PF04582.7 gi|313125474|ref|YP_004035738.1| - 0.068 12.3 9.0 2.8 7.0 1.2 3.2 2 1 1 3 3 3 0 Reovirus sigma C capsid protein zf-C2H2_jaz PF12171.3 gi|313125474|ref|YP_004035738.1| - 0.091 12.9 3.2 0.59 10.3 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding NPV_P10 PF05531.7 gi|313125474|ref|YP_004035738.1| - 0.12 12.6 16.6 3.7 7.8 5.1 4.3 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DZR PF12773.2 gi|313125474|ref|YP_004035738.1| - 0.17 11.7 0.4 0.37 10.6 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon MCPsignal PF00015.16 gi|313125474|ref|YP_004035738.1| - 0.32 10.5 12.8 0.76 9.2 5.1 2.7 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain LPP PF04728.8 gi|313125474|ref|YP_004035738.1| - 0.9 9.3 5.1 2.1 8.1 0.0 3.4 3 1 0 3 3 3 0 Lipoprotein leucine-zipper Sgf11 PF08209.6 gi|313125474|ref|YP_004035738.1| - 2.5 7.4 4.6 4.4 6.6 0.1 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) GAS PF13851.1 gi|313125474|ref|YP_004035738.1| - 3.2 6.8 47.8 8.1 5.5 13.7 3.1 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF651 PF04895.7 gi|313125474|ref|YP_004035738.1| - 5.9 6.5 7.8 21 4.7 0.6 3.8 3 1 0 3 3 3 0 Archaeal protein of unknown function (DUF651) ATG16 PF08614.6 gi|313125474|ref|YP_004035738.1| - 6.9 6.4 40.9 0.057 13.2 10.0 3.5 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) Nup54 PF13874.1 gi|313125474|ref|YP_004035738.1| - 8.2 6.0 32.3 0.73 9.5 0.4 3.9 3 1 0 3 3 3 0 Nucleoporin complex subunit 54 CAP_N PF01213.14 gi|313125474|ref|YP_004035738.1| - 9.7 5.3 10.0 5 6.3 0.9 2.5 2 1 1 3 3 3 0 Adenylate cyclase associated (CAP) N terminal WXG100 PF06013.7 gi|313125474|ref|YP_004035738.1| - 9.9 6.2 18.0 14 5.7 0.2 5.2 3 2 2 5 5 5 0 Proteins of 100 residues with WXG UPF0242 PF06785.6 gi|313125475|ref|YP_004035739.1| - 0.13 10.9 0.5 0.17 10.5 0.2 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) DUF2894 PF11445.3 gi|313125476|ref|YP_004035740.1| - 0.0069 16.6 2.5 0.071 13.3 1.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2894) NACHT PF05729.7 gi|313125476|ref|YP_004035740.1| - 0.013 15.2 0.0 0.091 12.4 0.0 2.5 3 0 0 3 3 3 0 NACHT domain IstB_IS21 PF01695.12 gi|313125476|ref|YP_004035740.1| - 0.02 14.3 0.0 0.053 12.9 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein EzrA PF06160.7 gi|313125476|ref|YP_004035740.1| - 0.026 12.7 2.6 0.041 12.0 1.8 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA AAA_19 PF13245.1 gi|313125476|ref|YP_004035740.1| - 0.035 13.8 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|313125476|ref|YP_004035740.1| - 0.039 14.0 0.0 0.13 12.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313125476|ref|YP_004035740.1| - 0.051 12.4 0.0 0.22 10.3 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain Bac_DnaA PF00308.13 gi|313125476|ref|YP_004035740.1| - 0.068 12.7 0.3 0.34 10.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein Spore_SspJ PF09575.5 gi|313125476|ref|YP_004035740.1| - 0.18 12.0 0.1 1.9 8.7 0.0 2.7 2 0 0 2 2 2 0 Small spore protein J (Spore_SspJ) AAA_16 PF13191.1 gi|313125476|ref|YP_004035740.1| - 0.24 11.3 2.8 5 7.0 0.0 3.5 2 1 0 3 3 3 0 AAA ATPase domain Lzipper-MIP1 PF14389.1 gi|313125476|ref|YP_004035740.1| - 0.51 10.4 6.3 1.4 9.0 4.4 1.8 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Syntaxin-6_N PF09177.6 gi|313125476|ref|YP_004035740.1| - 0.78 10.1 6.4 3.4 8.1 2.3 3.6 5 1 1 6 6 3 0 Syntaxin 6, N-terminal Phage_integrase PF00589.17 gi|313125477|ref|YP_004035741.1| - 4e-28 98.2 0.5 6.6e-28 97.5 0.4 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|313125477|ref|YP_004035741.1| - 3e-11 43.4 0.9 6.6e-11 42.3 0.6 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|313125477|ref|YP_004035741.1| - 1.8e-10 40.8 1.8 2.1e-10 40.6 0.3 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Sdh5 PF03937.11 gi|313125477|ref|YP_004035741.1| - 0.0038 16.8 0.0 0.037 13.7 0.0 2.4 2 0 0 2 2 2 1 Flavinator of succinate dehydrogenase NOSIC PF08060.8 gi|313125477|ref|YP_004035741.1| - 0.33 10.7 2.8 0.61 9.9 0.3 2.5 2 0 0 2 2 2 0 NOSIC (NUC001) domain Spc7 PF08317.6 gi|313125478|ref|YP_004035742.1| - 0.0053 15.4 3.9 0.0054 15.4 2.7 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein HOOK PF05622.7 gi|313125478|ref|YP_004035742.1| - 0.0085 13.9 9.1 0.0098 13.7 6.3 1.0 1 0 0 1 1 1 1 HOOK protein Anticodon_1 PF08264.8 gi|313125478|ref|YP_004035742.1| - 0.026 14.2 0.4 0.12 12.1 0.1 1.9 1 1 1 2 2 2 0 Anticodon-binding domain of tRNA Ufd2P_core PF10408.4 gi|313125478|ref|YP_004035742.1| - 0.034 12.3 2.6 0.04 12.1 1.8 1.1 1 0 0 1 1 1 0 Ubiquitin elongating factor core Imm29 PF15575.1 gi|313125478|ref|YP_004035742.1| - 0.19 11.3 1.2 0.26 10.8 0.7 1.4 1 1 0 1 1 1 0 Immunity protein 29 Exonuc_VII_L PF02601.10 gi|313125478|ref|YP_004035742.1| - 0.19 10.8 4.4 0.22 10.6 3.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2937 PF11157.3 gi|313125478|ref|YP_004035742.1| - 0.21 10.9 1.4 0.31 10.3 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) Plasmid_stabil PF05016.9 gi|313125478|ref|YP_004035742.1| - 0.28 11.6 3.0 1.3 9.4 2.0 2.0 1 1 0 1 1 1 0 Plasmid stabilisation system protein HXXSHH PF07586.6 gi|313125478|ref|YP_004035742.1| - 0.41 9.5 5.5 0.62 8.9 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1552) DUF4239 PF14023.1 gi|313125478|ref|YP_004035742.1| - 0.48 9.7 1.8 0.65 9.3 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) SAS4 PF15460.1 gi|313125478|ref|YP_004035742.1| - 0.78 9.6 5.6 0.83 9.5 3.3 1.5 1 1 0 1 1 1 0 Something about silencing, SAS, complex subunit 4 V_ATPase_I PF01496.14 gi|313125478|ref|YP_004035742.1| - 1.1 7.0 3.8 1.2 6.9 2.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IF2_N PF04760.10 gi|313125478|ref|YP_004035742.1| - 1.8 8.2 3.9 0.85 9.3 0.3 2.2 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HATPase_c PF02518.21 gi|313125479|ref|YP_004035743.1| - 2.2e-20 72.4 0.0 5.3e-19 67.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|313125479|ref|YP_004035743.1| - 2.7e-20 73.3 0.0 9e-20 71.6 0.0 1.9 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|313125479|ref|YP_004035743.1| - 1.6e-13 50.4 0.2 1.6e-13 50.4 0.2 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|313125479|ref|YP_004035743.1| - 4.4e-11 43.1 0.0 5.5e-10 39.5 0.0 2.6 2 2 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|313125479|ref|YP_004035743.1| - 4.7e-09 36.4 0.0 1.2e-08 35.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|313125479|ref|YP_004035743.1| - 0.0008 19.0 0.0 0.0022 17.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAA_27 PF13514.1 gi|313125479|ref|YP_004035743.1| - 0.0059 14.3 0.9 0.0085 13.8 0.6 1.1 1 0 0 1 1 1 1 AAA domain HisKA_3 PF07730.8 gi|313125479|ref|YP_004035743.1| - 0.59 10.5 5.1 1.7 9.0 0.3 3.1 2 1 1 3 3 3 0 Histidine kinase eIF-5_eIF-2B PF01873.12 gi|313125480|ref|YP_004035744.1| - 3.5e-28 97.7 0.0 4.8e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|313125480|ref|YP_004035744.1| - 1.8e-06 27.6 1.0 3.1e-06 26.8 0.7 1.4 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|313125480|ref|YP_004035744.1| - 0.036 13.9 1.9 0.16 11.9 1.1 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|313125480|ref|YP_004035744.1| - 0.06 12.8 0.3 12 5.4 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Flg_hook PF02120.11 gi|313125481|ref|YP_004035745.1| - 0.074 12.7 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK SHOCT PF09851.4 gi|313125482|ref|YP_004035746.1| - 6.8e-06 25.3 2.4 1.1e-05 24.7 1.6 1.4 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|313125482|ref|YP_004035746.1| - 0.042 13.6 0.4 0.073 12.8 0.3 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Ifi-6-16 PF06140.8 gi|313125482|ref|YP_004035746.1| - 0.19 11.5 6.1 0.3 10.8 3.8 1.6 1 1 1 2 2 2 0 Interferon-induced 6-16 family DUF2334 PF10096.4 gi|313125483|ref|YP_004035747.1| - 4.7e-07 29.4 0.0 6.8e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.16 gi|313125483|ref|YP_004035747.1| - 7.4e-05 22.3 0.1 0.00032 20.3 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide deacetylase DS PF01916.12 gi|313125484|ref|YP_004035748.1| - 9.8e-71 238.2 0.0 1.7e-51 175.1 0.0 2.0 2 0 0 2 2 2 2 Deoxyhypusine synthase NIF3 PF01784.13 gi|313125485|ref|YP_004035749.1| - 2.2e-52 178.0 0.0 2.5e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|313125485|ref|YP_004035749.1| - 0.0013 18.0 1.5 0.0049 16.1 0.1 2.4 2 2 0 2 2 2 1 Xylose isomerase-like TIM barrel Glyoxalase_4 PF13669.1 gi|313125485|ref|YP_004035749.1| - 0.0023 17.9 0.9 0.056 13.4 0.1 2.6 2 1 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Usp PF00582.21 gi|313125485|ref|YP_004035749.1| - 0.0056 16.8 1.0 0.4 10.8 0.1 2.3 2 0 0 2 2 2 2 Universal stress protein family Glyoxalase_2 PF12681.2 gi|313125485|ref|YP_004035749.1| - 0.19 12.3 1.4 0.69 10.5 0.1 2.3 2 1 0 2 2 2 0 Glyoxalase-like domain Arginase PF00491.16 gi|313125486|ref|YP_004035750.1| - 4.8e-57 193.3 0.8 5.5e-57 193.1 0.5 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.15 gi|313125487|ref|YP_004035751.1| - 5.9e-06 26.1 0.3 1.6e-05 24.7 0.2 1.8 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|313125487|ref|YP_004035751.1| - 0.049 13.5 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain ABC1 PF03109.11 gi|313125490|ref|YP_004035754.1| - 4.4e-28 97.6 0.0 2.4e-27 95.2 0.0 2.2 2 1 0 2 2 2 1 ABC1 family APH PF01636.18 gi|313125490|ref|YP_004035754.1| - 0.00036 20.3 0.5 0.015 15.0 0.1 2.6 1 1 1 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|313125490|ref|YP_004035754.1| - 0.00039 19.8 0.0 0.0025 17.1 0.0 2.1 2 1 0 2 2 2 1 RIO1 family Pkinase PF00069.20 gi|313125490|ref|YP_004035754.1| - 0.032 13.3 0.0 0.13 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein kinase domain HSP20 PF00011.16 gi|313125491|ref|YP_004035755.1| - 2.5e-12 46.5 0.0 3e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|313125491|ref|YP_004035755.1| - 0.049 13.2 0.5 0.084 12.5 0.2 1.5 1 1 0 1 1 1 0 GvpH MoeA_N PF03453.12 gi|313125492|ref|YP_004035756.1| - 5.9e-41 139.5 1.3 9.6e-41 138.8 0.9 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|313125492|ref|YP_004035756.1| - 4.1e-30 104.0 0.2 6.2e-30 103.4 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|313125492|ref|YP_004035756.1| - 1.1e-18 66.9 0.4 5.9e-18 64.5 0.1 2.5 2 1 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|313125493|ref|YP_004035757.1| - 4.8e-46 156.0 3.1 8.6e-46 155.2 2.2 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|313125493|ref|YP_004035757.1| - 1.7e-29 102.1 0.1 6.9e-29 100.1 0.1 2.0 1 1 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|313125493|ref|YP_004035757.1| - 8.9e-28 96.5 0.1 1.6e-27 95.6 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|313125493|ref|YP_004035757.1| - 1.4e-14 53.8 0.8 3.6e-14 52.4 0.1 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|313125493|ref|YP_004035757.1| - 0.0019 17.8 0.1 0.0041 16.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein T4_gp9_10 PF07880.6 gi|313125493|ref|YP_004035757.1| - 0.068 12.2 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage T4 gp9/10-like protein Shikimate_DH PF01488.15 gi|313125493|ref|YP_004035757.1| - 0.12 12.4 0.1 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Response_reg PF00072.19 gi|313125494|ref|YP_004035758.1| - 3e-09 36.8 0.1 6.4e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HAD_2 PF13419.1 gi|313125495|ref|YP_004035759.1| - 3e-23 82.9 0.9 3.6e-23 82.6 0.6 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313125495|ref|YP_004035759.1| - 3.8e-05 24.1 0.0 0.0012 19.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|313125495|ref|YP_004035759.1| - 0.00024 21.3 1.0 0.00054 20.1 0.7 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125495|ref|YP_004035759.1| - 0.0056 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|313125495|ref|YP_004035759.1| - 0.021 14.4 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase Pterin_4a PF01329.14 gi|313125498|ref|YP_004035762.1| - 1.8e-24 85.2 0.0 2.1e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Peptidase_S9 PF00326.16 gi|313125498|ref|YP_004035762.1| - 0.11 11.6 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Prolyl oligopeptidase family IF-2 PF11987.3 gi|313125498|ref|YP_004035762.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 1 0 1 1 1 0 Translation-initiation factor 2 GlutR_N PF05201.10 gi|313125499|ref|YP_004035763.1| - 1.4e-35 122.0 0.2 3.2e-35 120.9 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|313125499|ref|YP_004035763.1| - 9.5e-32 109.9 0.1 1.9e-31 108.9 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|313125499|ref|YP_004035763.1| - 7.9e-20 70.6 1.8 1.7e-19 69.6 1.3 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|313125499|ref|YP_004035763.1| - 5.9e-06 26.6 0.3 1.7e-05 25.1 0.2 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|313125499|ref|YP_004035763.1| - 0.00019 20.5 0.1 0.00029 19.9 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|313125499|ref|YP_004035763.1| - 0.00029 21.0 0.1 0.00096 19.3 0.1 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding ThiF PF00899.16 gi|313125499|ref|YP_004035763.1| - 0.00032 20.5 5.1 0.00048 19.9 0.6 3.2 2 1 1 3 3 3 1 ThiF family NAD_binding_2 PF03446.10 gi|313125499|ref|YP_004035763.1| - 0.00063 19.6 0.1 0.0017 18.2 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|313125499|ref|YP_004035763.1| - 0.0016 17.5 0.0 0.0032 16.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313125499|ref|YP_004035763.1| - 0.002 18.1 2.4 0.0051 16.8 1.3 2.0 1 1 0 1 1 1 1 NADH(P)-binding TrkA_N PF02254.13 gi|313125499|ref|YP_004035763.1| - 0.011 15.6 0.4 0.071 13.1 0.3 2.4 1 1 0 1 1 1 0 TrkA-N domain THF_DHG_CYH_C PF02882.14 gi|313125499|ref|YP_004035763.1| - 0.068 12.2 0.3 0.96 8.5 0.2 2.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AdoHcyase_NAD PF00670.16 gi|313125499|ref|YP_004035763.1| - 0.094 12.5 0.4 0.28 11.0 0.2 1.7 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|313125499|ref|YP_004035763.1| - 1.1 8.9 5.9 0.42 10.2 0.2 2.8 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|313125500|ref|YP_004035764.1| - 3e-20 72.4 0.0 5.3e-20 71.5 0.0 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|313125500|ref|YP_004035764.1| - 1.8e-05 23.5 0.0 5.2e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central PALP PF00291.20 gi|313125500|ref|YP_004035764.1| - 0.042 13.0 1.3 0.16 11.1 0.4 1.9 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme CysG_dimeriser PF10414.4 gi|313125500|ref|YP_004035764.1| - 1.9 8.0 9.7 0.079 12.4 0.8 3.0 2 2 2 4 4 4 0 Sirohaem synthase dimerisation region HTH_29 PF13551.1 gi|313125501|ref|YP_004035765.1| - 0.064 13.4 0.0 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix PRTase_1 PF11202.3 gi|313125502|ref|YP_004035766.1| - 0.11 11.4 0.3 1.5 7.7 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl transferase (PRTase) Prenyltransf PF01255.14 gi|313125504|ref|YP_004035768.1| - 9.9e-71 237.4 0.0 1.3e-70 237.0 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|313125505|ref|YP_004035769.1| - 1.8e-27 95.9 0.0 1.8e-26 92.6 0.0 2.0 1 1 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|313125506|ref|YP_004035770.1| - 1.7e-59 200.6 22.1 1.7e-59 200.6 15.3 2.7 3 1 0 3 3 3 1 Integral membrane protein DUF92 Acetyltransf_1 PF00583.19 gi|313125507|ref|YP_004035771.1| - 6.8e-13 48.4 0.1 1.7e-12 47.1 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|313125507|ref|YP_004035771.1| - 3.8e-08 32.9 0.0 1e-07 31.5 0.0 1.7 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|313125507|ref|YP_004035771.1| - 5.4e-08 32.9 0.0 6.4e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125507|ref|YP_004035771.1| - 7.6e-07 29.2 0.0 1.1e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313125507|ref|YP_004035771.1| - 2.3e-05 24.2 0.1 0.00011 22.0 0.0 2.0 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313125507|ref|YP_004035771.1| - 5e-05 23.2 0.0 6.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313125507|ref|YP_004035771.1| - 7.9e-05 22.8 0.0 9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125507|ref|YP_004035771.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Toprim_4 PF13662.1 gi|313125508|ref|YP_004035772.1| - 1.4e-10 41.0 0.4 4.2e-10 39.4 0.2 1.9 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|313125508|ref|YP_004035772.1| - 0.0057 16.5 0.1 0.12 12.3 0.1 3.0 2 2 0 2 2 2 1 Toprim domain Dicty_REP PF05086.7 gi|313125508|ref|YP_004035772.1| - 10 3.7 6.9 16 3.1 4.8 1.2 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein DUF3311 PF11755.3 gi|313125509|ref|YP_004035773.1| - 1.2e-12 47.1 13.4 1.3e-12 47.0 9.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF3154 PF11351.3 gi|313125509|ref|YP_004035773.1| - 0.015 15.0 6.6 0.018 14.7 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) SSF PF00474.12 gi|313125510|ref|YP_004035774.1| - 2.6e-50 171.2 27.2 3.4e-50 170.8 18.9 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Herpes_UL4 PF03277.8 gi|313125510|ref|YP_004035774.1| - 0.14 11.3 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus UL4 family Syndecan PF01034.15 gi|313125510|ref|YP_004035774.1| - 9.1 6.0 9.3 0.18 11.4 0.5 2.7 3 0 0 3 3 3 0 Syndecan domain YqcI_YcgG PF08892.6 gi|313125511|ref|YP_004035775.1| - 1.7e-76 256.6 0.0 2.1e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.15 gi|313125512|ref|YP_004035776.1| - 3.2e-33 115.1 0.0 3.8e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family Ins_allergen_rp PF06757.8 gi|313125515|ref|YP_004035779.1| - 0.029 13.8 0.5 0.043 13.2 0.4 1.3 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification DUF1405 PF07187.6 gi|313125516|ref|YP_004035780.1| - 5.8e-49 165.9 13.3 8.5e-49 165.4 9.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) DUF202 PF02656.10 gi|313125516|ref|YP_004035780.1| - 0.34 11.1 7.3 8.3 6.7 4.2 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Ank_2 PF12796.2 gi|313125517|ref|YP_004035781.1| - 1.9e-42 143.4 4.6 4.1e-18 65.4 0.1 2.4 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank PF00023.25 gi|313125517|ref|YP_004035781.1| - 5.4e-26 89.0 0.7 6.5e-10 38.3 0.0 4.1 5 0 0 5 5 5 3 Ankyrin repeat Ank_5 PF13857.1 gi|313125517|ref|YP_004035781.1| - 2.2e-22 78.5 1.9 7.7e-08 32.3 0.0 3.2 1 1 2 3 3 3 3 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|313125517|ref|YP_004035781.1| - 1.6e-20 71.1 0.7 1.2e-06 28.1 0.0 4.3 5 0 0 5 5 5 3 Ankyrin repeat Ank_4 PF13637.1 gi|313125517|ref|YP_004035781.1| - 8.3e-20 70.7 0.1 6.1e-08 32.9 0.0 3.2 1 1 2 3 3 3 3 Ankyrin repeats (many copies) DUF4157 PF13699.1 gi|313125518|ref|YP_004035782.1| - 6.9e-30 103.0 2.4 2e-29 101.5 1.7 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) GH-E PF14410.1 gi|313125518|ref|YP_004035782.1| - 1.7e-19 69.7 3.9 1.7e-19 69.7 2.7 2.0 2 0 0 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues Peptidase_MA_2 PF13485.1 gi|313125518|ref|YP_004035782.1| - 0.029 14.4 0.5 1.8 8.6 0.1 2.6 2 0 0 2 2 2 0 Peptidase MA superfamily SOR_SNZ PF01680.12 gi|313125519|ref|YP_004035783.1| - 8.1e-103 342.4 8.1 1e-102 342.0 5.6 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|313125519|ref|YP_004035783.1| - 1.8e-10 40.3 5.3 2.1e-05 23.7 0.4 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|313125519|ref|YP_004035783.1| - 0.0036 16.1 1.5 0.68 8.7 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|313125519|ref|YP_004035783.1| - 0.008 15.2 0.1 0.069 12.1 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|313125519|ref|YP_004035783.1| - 0.015 14.7 0.5 0.044 13.1 0.2 1.9 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MttA_Hcf106 PF02416.11 gi|313125519|ref|YP_004035783.1| - 0.11 11.5 0.2 4.6 6.4 0.0 2.5 2 0 0 2 2 2 0 mttA/Hcf106 family Usp PF00582.21 gi|313125520|ref|YP_004035784.1| - 1.5e-17 64.0 0.6 1.9e-17 63.7 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Mg_chelatase_2 PF13335.1 gi|313125520|ref|YP_004035784.1| - 0.0018 18.6 0.0 0.0023 18.2 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI GHMP_kinases_N PF00288.21 gi|313125521|ref|YP_004035785.1| - 1.4e-13 50.6 3.1 1.4e-13 50.6 2.2 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|313125521|ref|YP_004035785.1| - 2.6e-07 30.7 0.0 7.5e-07 29.2 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal Amino_oxidase PF01593.19 gi|313125522|ref|YP_004035786.1| - 9.5e-25 87.5 1.4 1.2e-20 74.0 0.1 2.2 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|313125522|ref|YP_004035786.1| - 1.4e-15 57.0 0.2 4.2e-15 55.5 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313125522|ref|YP_004035786.1| - 9.1e-10 37.9 0.4 1.8e-06 27.1 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313125522|ref|YP_004035786.1| - 1.7e-06 28.0 0.4 1.3e-05 25.1 0.0 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313125522|ref|YP_004035786.1| - 1e-05 24.5 0.9 1e-05 24.5 0.7 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|313125522|ref|YP_004035786.1| - 0.00011 21.9 0.2 0.043 13.5 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|313125522|ref|YP_004035786.1| - 0.00012 22.2 0.1 0.00019 21.5 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313125522|ref|YP_004035786.1| - 0.00034 19.8 0.1 0.00085 18.5 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|313125522|ref|YP_004035786.1| - 0.00049 19.0 0.1 0.00092 18.1 0.1 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|313125522|ref|YP_004035786.1| - 0.00091 17.7 0.5 0.0054 15.2 0.4 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|313125522|ref|YP_004035786.1| - 0.0032 17.8 2.8 0.0038 17.5 0.1 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313125522|ref|YP_004035786.1| - 0.0056 15.8 0.8 0.035 13.2 0.4 2.4 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.9 gi|313125522|ref|YP_004035786.1| - 0.013 14.1 0.4 0.087 11.4 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase FMO-like PF00743.14 gi|313125522|ref|YP_004035786.1| - 0.022 12.9 0.0 0.031 12.4 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.14 gi|313125522|ref|YP_004035786.1| - 0.024 13.7 0.4 0.092 11.7 0.2 1.9 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.7 gi|313125522|ref|YP_004035786.1| - 0.096 11.5 0.0 0.21 10.4 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|313125522|ref|YP_004035786.1| - 0.12 11.9 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TetR_N PF00440.18 gi|313125523|ref|YP_004035787.1| - 1.4e-08 34.2 0.1 2.4e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|313125523|ref|YP_004035787.1| - 4e-08 33.2 3.3 4e-08 33.2 2.3 2.6 2 2 1 3 3 3 1 Bacterial transcriptional repressor TetR_C_9 PF14514.1 gi|313125523|ref|YP_004035787.1| - 0.017 14.9 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, TetR, C-terminal Herpes_UL14 PF03580.9 gi|313125523|ref|YP_004035787.1| - 0.1 12.3 2.3 0.2 11.4 1.6 1.5 1 0 0 1 1 1 0 Herpesvirus UL14-like protein DUF2251 PF10008.4 gi|313125523|ref|YP_004035787.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2251) MatE PF01554.13 gi|313125524|ref|YP_004035788.1| - 3.2e-61 205.6 35.6 4.2e-36 124.0 7.6 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|313125524|ref|YP_004035788.1| - 2.6e-05 24.0 12.8 2.6e-05 24.0 8.9 5.0 4 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain HTH_20 PF12840.2 gi|313125527|ref|YP_004035791.1| - 9.7e-07 28.4 0.0 2.6e-06 27.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain zf-TFIIB PF13453.1 gi|313125527|ref|YP_004035791.1| - 0.066 12.4 12.4 0.36 10.0 0.9 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger ADK_lid PF05191.9 gi|313125527|ref|YP_004035791.1| - 1.3 8.7 6.8 13 5.5 0.1 3.3 3 0 0 3 3 3 0 Adenylate kinase, active site lid Zn_Tnp_IS1595 PF12760.2 gi|313125527|ref|YP_004035791.1| - 3.2 7.6 10.7 0.29 10.9 1.6 2.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|313125527|ref|YP_004035791.1| - 4.4 7.1 11.8 6.4 6.6 2.0 2.8 3 1 0 3 3 3 0 Double zinc ribbon zf-IS66 PF13005.2 gi|313125527|ref|YP_004035791.1| - 4.7 7.2 15.3 0.8 9.7 0.2 4.1 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|313125527|ref|YP_004035791.1| - 4.9 7.2 13.2 7.4 6.6 0.1 4.3 4 1 0 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|313125527|ref|YP_004035791.1| - 4.9 6.9 11.9 4.1 7.1 1.2 3.7 3 0 0 3 3 3 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|313125527|ref|YP_004035791.1| - 6.8 6.2 7.1 1.7 8.1 0.1 3.0 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Pyr_redox_2 PF07992.9 gi|313125529|ref|YP_004035793.1| - 3.8e-30 105.2 0.1 5e-30 104.9 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313125529|ref|YP_004035793.1| - 1.1e-09 38.5 0.4 1.3e-05 25.4 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313125529|ref|YP_004035793.1| - 0.00028 21.0 0.8 0.13 12.3 0.2 3.5 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313125529|ref|YP_004035793.1| - 0.0022 16.9 2.2 0.3 9.9 0.0 3.5 4 0 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313125529|ref|YP_004035793.1| - 0.004 17.1 1.8 0.12 12.3 0.0 3.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313125529|ref|YP_004035793.1| - 0.0052 15.3 0.0 1.9 6.8 0.0 3.2 3 1 0 3 3 3 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|313125529|ref|YP_004035793.1| - 0.077 12.7 4.5 1.6 8.5 0.0 3.4 4 0 0 4 4 4 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|313125529|ref|YP_004035793.1| - 0.21 10.4 5.6 2.5 6.8 0.0 3.6 4 1 0 4 4 4 0 FAD binding domain Lycopene_cycl PF05834.7 gi|313125529|ref|YP_004035793.1| - 0.21 10.4 1.5 0.9 8.3 0.0 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Trypsin_2 PF13365.1 gi|313125530|ref|YP_004035794.1| - 1e-18 67.4 0.9 2e-18 66.5 0.6 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|313125530|ref|YP_004035794.1| - 5.3e-13 49.0 0.3 1.4e-12 47.6 0.2 1.6 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|313125530|ref|YP_004035794.1| - 3.8e-12 45.9 0.0 7.7e-12 44.9 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Pico_P2A PF00947.14 gi|313125530|ref|YP_004035794.1| - 0.0041 16.9 0.2 0.0074 16.0 0.1 1.3 1 0 0 1 1 1 1 Picornavirus core protein 2A Peptidase_S32 PF05579.8 gi|313125530|ref|YP_004035794.1| - 0.046 12.6 3.7 2.2 7.1 0.2 2.8 3 0 0 3 3 3 0 Equine arteritis virus serine endopeptidase S32 PDZ PF00595.19 gi|313125530|ref|YP_004035794.1| - 0.064 13.4 0.1 0.52 10.5 0.0 2.3 1 1 1 2 2 2 0 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|313125530|ref|YP_004035794.1| - 0.23 9.8 3.3 0.068 11.5 0.4 1.3 2 0 0 2 2 2 0 Peptidase S46 DUF3465 PF11948.3 gi|313125531|ref|YP_004035795.1| - 0.064 13.0 0.0 0.069 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3465) DUF976 PF06162.7 gi|313125531|ref|YP_004035795.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Caenorhabditis elegans protein of unknown function (DUF976) GCHY-1 PF02649.9 gi|313125533|ref|YP_004035797.1| - 6.8e-87 291.2 2.1 7.7e-87 291.0 1.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF4167 PF13763.1 gi|313125533|ref|YP_004035797.1| - 0.065 13.2 1.5 0.13 12.2 1.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) HTH_24 PF13412.1 gi|313125534|ref|YP_004035798.1| - 1.9e-12 46.3 0.1 1.7e-09 36.8 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313125534|ref|YP_004035798.1| - 1.6e-07 30.9 0.0 3.6e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|313125534|ref|YP_004035798.1| - 2.4e-07 29.9 0.0 4.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.17 gi|313125534|ref|YP_004035798.1| - 1.6e-06 27.6 0.0 1e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|313125534|ref|YP_004035798.1| - 5e-06 25.9 0.6 3.9e-05 23.0 0.1 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313125534|ref|YP_004035798.1| - 7.7e-05 22.2 0.1 0.00047 19.7 0.0 2.3 3 0 0 3 3 3 1 HTH domain HTH_10 PF04967.7 gi|313125534|ref|YP_004035798.1| - 0.00015 21.2 0.3 0.031 13.8 0.0 2.9 3 0 0 3 3 2 1 HTH DNA binding domain EAP30 PF04157.11 gi|313125534|ref|YP_004035798.1| - 0.00078 18.6 0.8 0.059 12.5 0.0 2.9 3 0 0 3 3 3 1 EAP30/Vps36 family HTH_20 PF12840.2 gi|313125534|ref|YP_004035798.1| - 0.0013 18.5 0.1 0.0073 16.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|313125534|ref|YP_004035798.1| - 0.0017 18.3 0.0 0.53 10.3 0.0 2.5 2 0 0 2 2 2 1 Transposase HTH_27 PF13463.1 gi|313125534|ref|YP_004035798.1| - 0.0018 18.5 0.3 0.028 14.7 0.0 2.6 3 1 0 3 3 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|313125534|ref|YP_004035798.1| - 0.0053 16.3 0.0 0.047 13.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.17 gi|313125534|ref|YP_004035798.1| - 0.0057 16.4 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.1 gi|313125534|ref|YP_004035798.1| - 0.0058 16.1 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313125534|ref|YP_004035798.1| - 0.0078 15.7 0.0 0.029 13.9 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|313125534|ref|YP_004035798.1| - 0.0081 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|313125534|ref|YP_004035798.1| - 0.011 14.9 0.0 0.066 12.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF134 PF02001.11 gi|313125534|ref|YP_004035798.1| - 0.017 14.9 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_Tnp_4 PF13613.1 gi|313125534|ref|YP_004035798.1| - 0.024 14.1 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MbeD_MobD PF04899.7 gi|313125534|ref|YP_004035798.1| - 0.028 14.3 0.1 0.073 12.9 0.1 1.7 1 0 0 1 1 1 0 MbeD/MobD like HTH_WhiA PF02650.9 gi|313125534|ref|YP_004035798.1| - 0.028 14.7 0.0 0.32 11.4 0.0 2.3 2 0 0 2 2 2 0 WhiA C-terminal HTH domain HTH_Tnp_IS630 PF01710.11 gi|313125534|ref|YP_004035798.1| - 0.035 13.7 0.0 0.068 12.8 0.0 1.6 1 0 0 1 1 1 0 Transposase LexA_DNA_bind PF01726.11 gi|313125534|ref|YP_004035798.1| - 0.038 13.5 0.1 0.11 12.0 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain DUF1690 PF07956.6 gi|313125534|ref|YP_004035798.1| - 0.044 13.7 2.7 0.06 13.3 1.6 1.6 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) DUF4140 PF13600.1 gi|313125534|ref|YP_004035798.1| - 0.044 14.2 1.1 0.3 11.5 0.0 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HTH_CodY PF08222.6 gi|313125534|ref|YP_004035798.1| - 0.051 12.9 0.0 0.098 12.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_DeoR PF08220.7 gi|313125534|ref|YP_004035798.1| - 0.051 13.1 0.2 2.7 7.6 0.0 2.9 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain Phage_CI_repr PF07022.8 gi|313125534|ref|YP_004035798.1| - 0.075 13.1 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313125534|ref|YP_004035798.1| - 0.078 12.4 0.0 0.43 10.0 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|313125534|ref|YP_004035798.1| - 0.08 12.9 0.0 0.3 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|313125534|ref|YP_004035798.1| - 0.08 12.9 0.1 0.19 11.7 0.0 1.6 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_1 PF00126.22 gi|313125534|ref|YP_004035798.1| - 0.08 12.6 0.2 18 5.1 0.1 2.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_37 PF13744.1 gi|313125534|ref|YP_004035798.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|313125534|ref|YP_004035798.1| - 0.12 11.6 0.0 0.29 10.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.15 gi|313125534|ref|YP_004035798.1| - 0.24 11.3 1.2 2 8.4 0.1 3.0 2 1 0 2 2 2 0 Transposase FlxA PF14282.1 gi|313125534|ref|YP_004035798.1| - 0.57 10.1 5.2 0.13 12.1 0.4 2.1 2 0 0 2 2 2 0 FlxA-like protein TrmB PF01978.14 gi|313125535|ref|YP_004035799.1| - 3.6e-20 71.4 0.1 7.7e-20 70.3 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|313125535|ref|YP_004035799.1| - 0.00018 20.6 0.0 0.00029 19.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_9 PF08221.6 gi|313125535|ref|YP_004035799.1| - 0.00073 19.3 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain PadR PF03551.9 gi|313125535|ref|YP_004035799.1| - 0.0026 17.4 0.0 0.006 16.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|313125535|ref|YP_004035799.1| - 0.037 13.6 0.6 0.1 12.2 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313125535|ref|YP_004035799.1| - 0.05 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PLDc_2 PF13091.1 gi|313125535|ref|YP_004035799.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 PLD-like domain DUF2762 PF10960.3 gi|313125535|ref|YP_004035799.1| - 0.15 11.7 0.2 0.33 10.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2762) Thioredox_DsbH PF03190.10 gi|313125536|ref|YP_004035800.1| - 1.5e-29 102.8 0.0 2.4e-29 102.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|313125536|ref|YP_004035800.1| - 1.4e-13 50.6 0.0 3.4e-13 49.4 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin PF00085.15 gi|313125536|ref|YP_004035800.1| - 3.9e-08 32.9 0.0 7e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|313125536|ref|YP_004035800.1| - 1.1e-06 28.7 0.0 4.9e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.6 gi|313125536|ref|YP_004035800.1| - 0.00047 19.2 2.6 0.084 11.8 0.1 3.0 1 1 1 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.9 gi|313125536|ref|YP_004035800.1| - 0.015 14.7 2.1 1 8.6 0.3 3.1 3 1 0 3 3 3 0 Glycosyl hydrolase family 76 FxsA PF04186.8 gi|313125537|ref|YP_004035801.1| - 1.3e-31 108.7 6.4 1.5e-31 108.4 4.4 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein DUF2273 PF10031.4 gi|313125537|ref|YP_004035801.1| - 0.91 9.1 5.5 7.7 6.2 1.8 3.1 2 1 1 3 3 3 0 Small integral membrane protein (DUF2273) Cir_Bir_Yir PF06022.6 gi|313125539|ref|YP_004035803.1| - 0.01 15.1 0.8 0.016 14.4 0.5 1.3 1 0 0 1 1 1 0 Plasmodium variant antigen protein Cir/Yir/Bir SplA PF11132.3 gi|313125539|ref|YP_004035803.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) DUF4157 PF13699.1 gi|313125541|ref|YP_004035805.1| - 5e-30 103.4 1.2 1.3e-29 102.1 0.8 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Melittin PF01372.12 gi|313125543|ref|YP_004035807.1| - 0.078 12.3 0.4 0.19 11.0 0.3 1.7 1 0 0 1 1 1 0 Melittin TrbC PF04956.8 gi|313125543|ref|YP_004035807.1| - 0.29 11.1 5.0 0.16 11.9 0.3 2.1 1 1 1 2 2 2 0 TrbC/VIRB2 family PPO1_DWL PF12142.3 gi|313125544|ref|YP_004035808.1| - 0.046 13.2 0.2 0.092 12.2 0.2 1.5 1 1 0 1 1 1 0 Polyphenol oxidase middle domain DUF3169 PF11368.3 gi|313125545|ref|YP_004035809.1| - 0.011 15.0 1.6 0.014 14.5 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF3112 PF11309.3 gi|313125545|ref|YP_004035809.1| - 0.045 13.5 4.2 1.6 8.4 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3112) HTH_24 PF13412.1 gi|313125545|ref|YP_004035809.1| - 0.08 12.3 0.4 0.14 11.5 0.3 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF204 PF02659.10 gi|313125545|ref|YP_004035809.1| - 0.11 12.6 4.3 1 9.5 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF Ndc1_Nup PF09531.5 gi|313125546|ref|YP_004035810.1| - 0.012 14.0 1.5 0.017 13.6 1.0 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF221 PF02714.10 gi|313125546|ref|YP_004035810.1| - 0.085 11.6 2.9 0.11 11.3 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF221 PadR PF03551.9 gi|313125547|ref|YP_004035811.1| - 1.1e-05 25.0 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|313125547|ref|YP_004035811.1| - 0.00013 21.5 0.0 0.00029 20.4 0.0 1.7 1 1 0 1 1 1 1 HxlR-like helix-turn-helix DUF4065 PF13274.1 gi|313125547|ref|YP_004035811.1| - 0.0011 19.6 1.0 0.0027 18.3 0.7 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) HTH_34 PF13601.1 gi|313125547|ref|YP_004035811.1| - 0.0012 18.8 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|313125547|ref|YP_004035811.1| - 0.003 17.4 0.0 0.0044 16.9 0.0 1.3 1 0 0 1 1 1 1 Replication-relaxation DUF505 PF04458.7 gi|313125547|ref|YP_004035811.1| - 0.0092 14.1 0.2 0.012 13.7 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF505) SieB PF14163.1 gi|313125547|ref|YP_004035811.1| - 0.054 13.0 0.1 6.9 6.2 0.0 2.6 1 1 1 3 3 3 0 Superinfection exclusion protein B HTH_27 PF13463.1 gi|313125547|ref|YP_004035811.1| - 0.1 12.9 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pribosyltran PF00156.22 gi|313125548|ref|YP_004035812.1| - 1.1e-08 34.8 0.0 2.5e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Speriolin_C PF15059.1 gi|313125548|ref|YP_004035812.1| - 0.03 14.3 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 Speriolin C-terminus FecCD PF01032.13 gi|313125551|ref|YP_004035815.1| - 1.5e-89 299.8 33.8 1.9e-89 299.5 23.4 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|313125551|ref|YP_004035815.1| - 8e-05 22.0 14.7 8e-05 22.0 10.2 2.2 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|313125552|ref|YP_004035816.1| - 2.7e-10 39.8 0.0 9.1e-10 38.0 0.0 1.8 1 1 1 2 2 2 1 Periplasmic binding protein Myco_19_kDa PF05481.7 gi|313125552|ref|YP_004035816.1| - 0.035 13.9 2.1 0.064 13.0 1.5 1.4 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen DUF3359 PF11839.3 gi|313125552|ref|YP_004035816.1| - 0.049 13.9 1.7 0.1 12.9 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) TrmB PF01978.14 gi|313125553|ref|YP_004035817.1| - 0.00015 21.3 0.1 0.0003 20.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313125553|ref|YP_004035817.1| - 0.00024 20.7 0.6 0.0006 19.4 0.4 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313125553|ref|YP_004035817.1| - 0.00054 19.6 0.2 0.00097 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|313125553|ref|YP_004035817.1| - 0.00084 18.9 0.1 0.0021 17.6 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|313125553|ref|YP_004035817.1| - 0.0049 16.4 0.2 0.011 15.2 0.2 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|313125553|ref|YP_004035817.1| - 0.0058 16.4 0.0 0.0086 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|313125553|ref|YP_004035817.1| - 0.0066 16.0 0.1 0.028 14.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|313125553|ref|YP_004035817.1| - 0.029 14.1 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Crp PF00325.15 gi|313125553|ref|YP_004035817.1| - 0.065 12.7 0.2 0.13 11.7 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Sulfolobus_pRN PF05584.6 gi|313125553|ref|YP_004035817.1| - 0.067 13.1 0.4 0.11 12.4 0.3 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF4370 PF14290.1 gi|313125553|ref|YP_004035817.1| - 0.072 12.5 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4370) TFIIE_alpha PF02002.12 gi|313125553|ref|YP_004035817.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.2 gi|313125553|ref|YP_004035817.1| - 0.84 9.4 4.5 0.15 11.8 0.4 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Na_Ca_ex PF01699.19 gi|313125554|ref|YP_004035818.1| - 1.6e-40 137.9 30.5 5.1e-24 84.4 9.2 2.3 2 1 0 2 2 2 2 Sodium/calcium exchanger protein SCP2_2 PF13530.1 gi|313125555|ref|YP_004035819.1| - 2.2e-58 197.2 6.4 3.1e-58 196.7 4.4 1.2 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|313125555|ref|YP_004035819.1| - 2.4e-26 92.0 0.3 9.8e-25 86.8 0.0 2.6 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125555|ref|YP_004035819.1| - 2.6e-06 27.4 0.0 3.6e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313125555|ref|YP_004035819.1| - 0.0011 18.9 0.0 0.0041 17.1 0.0 2.0 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313125555|ref|YP_004035819.1| - 0.026 14.6 1.2 1.7 8.7 0.0 2.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Cytochrom_B_N PF00033.14 gi|313125556|ref|YP_004035820.1| - 0.15 11.4 1.6 0.22 10.8 1.1 1.3 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Mod_r PF07200.8 gi|313125558|ref|YP_004035822.1| - 0.14 12.0 0.5 0.21 11.4 0.3 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein CPSase_L_D2 PF02786.12 gi|313125560|ref|YP_004035824.1| - 2.9e-96 320.8 0.2 1.8e-58 197.2 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|313125560|ref|YP_004035824.1| - 6.7e-45 151.7 0.6 1.5e-21 76.5 0.1 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|313125560|ref|YP_004035824.1| - 9e-32 110.2 0.0 6.1e-18 65.1 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|313125560|ref|YP_004035824.1| - 6.6e-22 77.5 0.0 1.5e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|313125560|ref|YP_004035824.1| - 9.7e-21 73.8 0.0 1e-11 44.1 0.0 3.9 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|313125560|ref|YP_004035824.1| - 1.9e-13 50.1 0.0 7e-08 32.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|313125560|ref|YP_004035824.1| - 1.3e-12 47.5 0.0 1.8e-08 34.0 0.0 2.8 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|313125560|ref|YP_004035824.1| - 3.2e-11 43.3 0.1 2.3e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|313125560|ref|YP_004035824.1| - 0.0036 16.7 0.0 0.058 12.8 0.0 2.6 2 0 0 2 2 2 1 RimK-like ATP-grasp domain TrbL PF04610.9 gi|313125561|ref|YP_004035825.1| - 0.77 9.4 7.2 2.4 7.7 0.2 2.3 2 0 0 2 2 2 0 TrbL/VirB6 plasmid conjugal transfer protein DUF204 PF02659.10 gi|313125561|ref|YP_004035825.1| - 1.8 8.7 7.8 2.1 8.5 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function DUF NAD_binding_10 PF13460.1 gi|313125562|ref|YP_004035826.1| - 3.1e-35 121.8 0.7 4.2e-35 121.4 0.5 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313125562|ref|YP_004035826.1| - 1.2e-13 50.9 0.0 2.1e-13 50.0 0.0 1.3 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|313125562|ref|YP_004035826.1| - 4.5e-13 49.1 0.0 7e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313125562|ref|YP_004035826.1| - 6.2e-12 44.8 0.1 8.2e-12 44.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.19 gi|313125562|ref|YP_004035826.1| - 2.4e-05 24.6 0.1 3.6e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|313125562|ref|YP_004035826.1| - 0.0002 21.0 1.0 0.0047 16.6 0.3 2.2 2 0 0 2 2 2 1 KR domain TrkA_N PF02254.13 gi|313125562|ref|YP_004035826.1| - 0.00031 20.6 0.2 0.00046 20.1 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_4 PF07993.7 gi|313125562|ref|YP_004035826.1| - 0.00088 18.2 0.0 1.2 8.0 0.0 3.0 2 1 1 3 3 3 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313125562|ref|YP_004035826.1| - 0.0026 16.7 0.2 0.016 14.0 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|313125562|ref|YP_004035826.1| - 0.0029 17.5 3.8 0.015 15.2 1.7 2.3 2 1 0 2 2 2 1 short chain dehydrogenase DapB_N PF01113.15 gi|313125562|ref|YP_004035826.1| - 0.013 15.3 0.1 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|313125562|ref|YP_004035826.1| - 0.081 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|313125562|ref|YP_004035826.1| - 0.081 13.4 0.4 1.2 9.6 0.0 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Saccharop_dh PF03435.13 gi|313125562|ref|YP_004035826.1| - 0.096 11.6 0.3 0.13 11.2 0.2 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_kinase PF01513.16 gi|313125563|ref|YP_004035827.1| - 1.1e-34 119.5 0.3 1.4e-34 119.1 0.2 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|313125563|ref|YP_004035827.1| - 0.0066 15.8 0.2 0.011 15.1 0.2 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain KaiC PF06745.8 gi|313125564|ref|YP_004035828.1| - 2.1e-52 177.4 0.0 2.6e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|313125564|ref|YP_004035828.1| - 9.2e-10 38.2 0.0 1.5e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|313125564|ref|YP_004035828.1| - 8.2e-07 27.7 0.1 1.6e-06 26.7 0.1 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|313125564|ref|YP_004035828.1| - 0.00051 19.2 0.0 0.00075 18.6 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|313125564|ref|YP_004035828.1| - 0.0017 18.2 0.0 0.003 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|313125564|ref|YP_004035828.1| - 0.004 16.0 0.0 0.0076 15.1 0.0 1.4 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|313125564|ref|YP_004035828.1| - 0.02 14.5 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|313125564|ref|YP_004035828.1| - 0.029 13.7 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|313125564|ref|YP_004035828.1| - 0.03 14.0 0.1 0.067 12.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|313125564|ref|YP_004035828.1| - 0.034 13.5 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|313125564|ref|YP_004035828.1| - 0.05 13.4 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|313125564|ref|YP_004035828.1| - 0.05 12.2 0.1 0.077 11.6 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|313125564|ref|YP_004035828.1| - 0.059 13.0 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|313125564|ref|YP_004035828.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313125564|ref|YP_004035828.1| - 0.067 13.3 0.1 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|313125564|ref|YP_004035828.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|313125564|ref|YP_004035828.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein PPV_E1_C PF00519.12 gi|313125564|ref|YP_004035828.1| - 0.15 10.6 0.0 0.21 10.1 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase IR1-M PF12185.3 gi|313125564|ref|YP_004035828.1| - 0.15 11.7 3.1 0.22 11.2 0.2 2.5 2 0 0 2 2 2 0 Nup358/RanBP2 E3 ligase domain Zn-ribbon_8 PF09723.5 gi|313125565|ref|YP_004035829.1| - 2.3e-05 24.2 0.7 0.044 13.7 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|313125565|ref|YP_004035829.1| - 0.00011 21.8 1.0 0.031 13.9 0.1 2.3 2 0 0 2 2 2 1 Nudix N-terminal Rubredoxin PF00301.15 gi|313125565|ref|YP_004035829.1| - 0.0002 21.1 1.9 0.0061 16.4 1.6 2.4 1 1 1 2 2 2 2 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|313125565|ref|YP_004035829.1| - 0.00024 20.3 3.5 0.12 11.7 0.0 2.5 2 1 0 2 2 2 2 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|313125565|ref|YP_004035829.1| - 0.00098 19.0 0.9 1.1 9.2 0.1 2.4 2 0 0 2 2 2 2 zinc-finger A2L_zn_ribbon PF08792.5 gi|313125565|ref|YP_004035829.1| - 0.0018 17.6 0.7 0.19 11.2 0.1 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|313125565|ref|YP_004035829.1| - 0.0044 16.7 3.7 0.53 10.1 0.4 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|313125565|ref|YP_004035829.1| - 0.0056 16.8 0.3 0.44 10.7 0.0 2.1 2 0 0 2 2 2 1 Ribosomal L32p protein family zf-ribbon_3 PF13248.1 gi|313125565|ref|YP_004035829.1| - 0.0094 15.1 7.6 0.047 12.9 5.3 2.0 1 1 1 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313125565|ref|YP_004035829.1| - 0.012 15.2 0.5 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|313125565|ref|YP_004035829.1| - 0.022 14.5 1.4 0.25 11.1 1.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|313125565|ref|YP_004035829.1| - 0.024 14.3 0.2 0.029 14.1 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_2 PF13240.1 gi|313125565|ref|YP_004035829.1| - 0.025 14.0 1.7 3.6 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|313125565|ref|YP_004035829.1| - 0.027 14.3 0.2 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.4 gi|313125565|ref|YP_004035829.1| - 0.027 14.1 3.6 0.69 9.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|313125565|ref|YP_004035829.1| - 0.027 14.7 1.5 0.06 13.6 1.1 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF35_N PF12172.3 gi|313125565|ref|YP_004035829.1| - 0.047 13.6 2.3 2.7 8.0 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.1 gi|313125565|ref|YP_004035829.1| - 0.048 13.6 1.6 1.8 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1610 PF07754.6 gi|313125565|ref|YP_004035829.1| - 0.054 13.6 4.0 1.4 9.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.6 gi|313125565|ref|YP_004035829.1| - 0.055 12.9 3.1 3.2 7.3 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|313125565|ref|YP_004035829.1| - 0.078 12.7 7.7 0.18 11.6 0.6 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|313125565|ref|YP_004035829.1| - 0.088 12.4 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-H2C2_2 PF13465.1 gi|313125565|ref|YP_004035829.1| - 0.093 13.0 2.5 10 6.6 0.5 2.6 2 1 0 2 2 2 0 Zinc-finger double domain Cys_rich_CPCC PF14206.1 gi|313125565|ref|YP_004035829.1| - 0.11 12.0 0.4 3.2 7.3 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPCC NMD3 PF04981.8 gi|313125565|ref|YP_004035829.1| - 0.15 11.1 0.6 5.3 6.0 0.0 1.9 1 1 1 2 2 2 0 NMD3 family zf-C2H2_4 PF13894.1 gi|313125565|ref|YP_004035829.1| - 0.23 11.8 1.6 31 5.2 0.1 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger ADK_lid PF05191.9 gi|313125565|ref|YP_004035829.1| - 0.38 10.4 4.9 4.8 6.9 0.7 2.5 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-nanos PF05741.8 gi|313125565|ref|YP_004035829.1| - 0.38 10.7 1.8 4.8 7.2 1.3 2.2 1 1 0 1 1 1 0 Nanos RNA binding domain DUF1936 PF09151.5 gi|313125565|ref|YP_004035829.1| - 0.72 9.4 3.4 3.5 7.1 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-C2H2 PF00096.21 gi|313125565|ref|YP_004035829.1| - 2.1 8.8 8.0 8.3 6.9 0.1 2.9 3 0 0 3 3 3 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.11 gi|313125565|ref|YP_004035829.1| - 8.1 6.2 9.7 4.6 7.0 1.8 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GerE PF00196.14 gi|313125566|ref|YP_004035830.1| - 0.0027 16.9 0.1 0.0039 16.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|313125566|ref|YP_004035830.1| - 0.0046 16.3 0.2 0.0078 15.6 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 CENP-B_N PF04218.8 gi|313125566|ref|YP_004035830.1| - 0.0077 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_7 PF02796.10 gi|313125566|ref|YP_004035830.1| - 0.0089 15.8 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|313125566|ref|YP_004035830.1| - 0.014 15.0 0.1 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|313125566|ref|YP_004035830.1| - 0.047 13.7 0.3 0.1 12.6 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3720 PF12517.3 gi|313125567|ref|YP_004035831.1| - 0.21 12.2 1.9 4.6 7.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3720) Nitroreductase PF00881.19 gi|313125568|ref|YP_004035832.1| - 2.6e-34 118.4 0.0 4e-34 117.8 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family Usp PF00582.21 gi|313125569|ref|YP_004035833.1| - 8.3e-31 107.0 0.3 9.3e-31 106.8 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|313125569|ref|YP_004035833.1| - 0.12 12.9 0.0 0.18 12.3 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase AAA_10 PF12846.2 gi|313125570|ref|YP_004035834.1| - 9.5e-20 71.2 0.1 4.8e-19 68.9 0.0 1.9 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|313125570|ref|YP_004035834.1| - 4.7e-13 49.4 0.0 8.6e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|313125570|ref|YP_004035834.1| - 3.3e-06 26.7 0.0 0.0031 16.9 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|313125570|ref|YP_004035834.1| - 7.9e-06 24.5 0.1 0.033 12.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.1 gi|313125570|ref|YP_004035834.1| - 6.6e-05 22.9 0.0 0.36 10.7 0.0 2.6 1 1 0 2 2 2 2 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|313125570|ref|YP_004035834.1| - 0.0045 15.6 0.0 0.0086 14.7 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|313125570|ref|YP_004035834.1| - 0.0047 16.6 0.0 0.015 15.0 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain T2SE PF00437.15 gi|313125570|ref|YP_004035834.1| - 0.009 14.9 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|313125570|ref|YP_004035834.1| - 0.017 15.2 0.0 0.097 12.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|313125570|ref|YP_004035834.1| - 0.023 14.5 0.0 0.076 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|313125570|ref|YP_004035834.1| - 0.055 13.7 0.0 0.23 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|313125570|ref|YP_004035834.1| - 0.059 14.1 0.0 0.21 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|313125570|ref|YP_004035834.1| - 0.072 12.1 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Zot PF05707.7 gi|313125570|ref|YP_004035834.1| - 0.091 12.2 0.0 3 7.2 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|313125570|ref|YP_004035834.1| - 0.11 12.0 0.1 2.2 7.7 0.0 2.1 1 1 0 2 2 2 0 DEAD/DEAH box helicase Viral_helicase1 PF01443.13 gi|313125570|ref|YP_004035834.1| - 0.11 11.9 0.0 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF2188 PF09954.4 gi|313125571|ref|YP_004035835.1| - 0.076 12.9 0.3 0.14 12.0 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) Integrase_AP2 PF14657.1 gi|313125571|ref|YP_004035835.1| - 0.11 12.2 0.1 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AP2-like DNA-binding integrase domain NurA PF09376.5 gi|313125572|ref|YP_004035836.1| - 2.9e-28 99.0 0.0 3.6e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 NurA domain HAD_2 PF13419.1 gi|313125573|ref|YP_004035837.1| - 3.8e-22 79.3 0.1 4.5e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313125573|ref|YP_004035837.1| - 2.1e-13 51.1 1.6 3.9e-13 50.3 1.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125573|ref|YP_004035837.1| - 2.6e-08 33.4 0.2 6.1e-08 32.2 0.2 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like 5_nucleotid PF05761.9 gi|313125573|ref|YP_004035837.1| - 0.038 12.5 0.1 0.26 9.7 0.0 2.1 2 1 1 3 3 3 0 5' nucleotidase family MR_MLE_C PF13378.1 gi|313125574|ref|YP_004035838.1| - 0.033 14.1 0.0 0.058 13.3 0.0 1.4 1 1 0 1 1 1 0 Enolase C-terminal domain-like DUF2240 PF09999.4 gi|313125575|ref|YP_004035839.1| - 6.1e-51 171.6 0.1 6.8e-51 171.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF1470 PF07336.6 gi|313125575|ref|YP_004035839.1| - 0.15 12.3 5.5 2.7 8.3 3.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1470) Ribosomal_S8e PF01201.17 gi|313125576|ref|YP_004035840.1| - 1.7e-34 118.7 3.1 1.9e-34 118.6 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PhoU PF01895.14 gi|313125577|ref|YP_004035841.1| - 2.2e-24 85.7 8.3 2.5e-17 63.1 0.8 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|313125577|ref|YP_004035841.1| - 1.2e-10 40.8 0.0 2.7e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF4398 PF14346.1 gi|313125577|ref|YP_004035841.1| - 0.011 15.7 0.2 0.043 13.8 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) HisKA PF00512.20 gi|313125577|ref|YP_004035841.1| - 6.2 6.8 8.2 1.2 9.2 0.4 3.4 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain PBP_like_2 PF12849.2 gi|313125578|ref|YP_004035842.1| - 5e-40 137.7 3.2 8.8e-40 136.9 2.2 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|313125578|ref|YP_004035842.1| - 2.7e-10 39.5 0.0 4.1e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|313125578|ref|YP_004035842.1| - 0.33 11.0 4.8 0.68 10.0 3.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PBP_like_2 PF12849.2 gi|313125579|ref|YP_004035843.1| - 2e-40 139.0 1.8 4.2e-40 137.9 1.3 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|313125579|ref|YP_004035843.1| - 2.8e-11 42.7 0.2 4.3e-11 42.1 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.17 gi|313125580|ref|YP_004035844.1| - 3.1e-18 65.9 13.4 3.1e-18 65.9 9.3 2.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2530 PF10745.4 gi|313125580|ref|YP_004035844.1| - 0.064 13.2 0.5 0.064 13.2 0.4 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) BPD_transp_1 PF00528.17 gi|313125581|ref|YP_004035845.1| - 4e-24 85.1 10.1 4e-24 85.1 7.0 4.8 3 2 1 5 5 5 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|313125582|ref|YP_004035846.1| - 8.1e-31 107.1 0.0 1.3e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125582|ref|YP_004035846.1| - 5.4e-15 56.1 0.0 1.3e-13 51.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313125582|ref|YP_004035846.1| - 7e-08 31.9 0.2 4.7e-06 26.0 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313125582|ref|YP_004035846.1| - 6.5e-06 26.3 0.0 8.9e-05 22.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313125582|ref|YP_004035846.1| - 1.7e-05 24.0 0.0 0.11 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|313125582|ref|YP_004035846.1| - 0.0001 21.7 0.0 0.00028 20.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313125582|ref|YP_004035846.1| - 0.00024 21.1 1.1 0.0027 17.7 0.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|313125582|ref|YP_004035846.1| - 0.00071 18.7 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|313125582|ref|YP_004035846.1| - 0.0026 18.1 0.0 0.0047 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313125582|ref|YP_004035846.1| - 0.0074 15.7 0.0 0.022 14.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|313125582|ref|YP_004035846.1| - 0.015 15.2 0.1 0.023 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|313125582|ref|YP_004035846.1| - 0.015 13.8 0.0 2.9 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|313125582|ref|YP_004035846.1| - 0.017 15.9 0.2 0.21 12.4 0.0 2.7 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|313125582|ref|YP_004035846.1| - 0.017 14.8 0.0 4.6 7.0 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Rad17 PF03215.10 gi|313125582|ref|YP_004035846.1| - 0.031 12.9 0.0 0.042 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Adeno_IVa2 PF02456.10 gi|313125582|ref|YP_004035846.1| - 0.053 12.1 0.0 0.88 8.1 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|313125582|ref|YP_004035846.1| - 0.064 12.6 0.1 0.15 11.4 0.1 1.8 1 1 0 1 1 1 0 AAA-like domain DeoRC PF00455.17 gi|313125582|ref|YP_004035846.1| - 0.067 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain RNA_helicase PF00910.17 gi|313125582|ref|YP_004035846.1| - 0.093 12.9 0.1 0.44 10.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.1 gi|313125582|ref|YP_004035846.1| - 0.1 12.8 0.0 0.31 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|313125582|ref|YP_004035846.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|313125582|ref|YP_004035846.1| - 0.14 12.3 0.0 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PhoU PF01895.14 gi|313125583|ref|YP_004035847.1| - 1.1e-35 121.8 12.8 7.6e-19 67.9 1.4 2.4 3 0 0 3 3 3 2 PhoU domain Nucleos_tra2_C PF07662.8 gi|313125584|ref|YP_004035848.1| - 0.027 13.9 1.2 0.029 13.8 0.9 1.0 1 0 0 1 1 1 0 Na+ dependent nucleoside transporter C-terminus DUF2628 PF10947.3 gi|313125584|ref|YP_004035848.1| - 0.97 9.2 7.7 1.1 9.0 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF3487 PF11990.3 gi|313125584|ref|YP_004035848.1| - 1.2 8.5 4.2 1.3 8.4 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2583 PF10762.4 gi|313125584|ref|YP_004035848.1| - 2.3 8.3 6.7 1 9.5 3.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) AAA PF00004.24 gi|313125585|ref|YP_004035849.1| - 1.1e-101 336.2 0.0 6.5e-50 168.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|313125585|ref|YP_004035849.1| - 1.8e-29 101.5 0.0 1.1e-28 98.9 0.0 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_5 PF07728.9 gi|313125585|ref|YP_004035849.1| - 3.8e-15 55.8 1.4 1.2e-06 28.2 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|313125585|ref|YP_004035849.1| - 4.3e-15 55.4 0.0 4.6e-07 29.1 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|313125585|ref|YP_004035849.1| - 5.9e-15 54.6 0.1 2.9e-14 52.4 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|313125585|ref|YP_004035849.1| - 2.5e-14 53.6 0.0 1e-06 28.9 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|313125585|ref|YP_004035849.1| - 2.3e-13 50.4 1.0 0.00056 20.0 0.1 4.6 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|313125585|ref|YP_004035849.1| - 3.8e-13 49.7 0.0 7.1e-06 26.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|313125585|ref|YP_004035849.1| - 7.8e-13 49.3 0.0 9.2e-05 23.2 0.0 3.2 3 1 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|313125585|ref|YP_004035849.1| - 1.7e-11 43.5 0.0 4.2e-05 22.4 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|313125585|ref|YP_004035849.1| - 4.7e-11 42.7 0.0 5.1e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|313125585|ref|YP_004035849.1| - 2.9e-10 40.1 0.0 0.00079 19.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|313125585|ref|YP_004035849.1| - 1.6e-09 37.3 1.8 0.0012 18.5 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|313125585|ref|YP_004035849.1| - 1.1e-08 34.6 0.0 0.0057 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|313125585|ref|YP_004035849.1| - 2.6e-08 34.2 0.0 0.0049 17.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|313125585|ref|YP_004035849.1| - 2.9e-08 33.3 6.4 0.77 9.1 0.1 4.5 2 2 2 4 4 4 3 AAA domain Zeta_toxin PF06414.7 gi|313125585|ref|YP_004035849.1| - 4.9e-08 32.3 0.0 0.0042 16.1 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.21 gi|313125585|ref|YP_004035849.1| - 4e-07 29.6 0.1 0.037 13.5 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|313125585|ref|YP_004035849.1| - 8.5e-07 28.3 0.1 0.042 13.0 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|313125585|ref|YP_004035849.1| - 9.7e-07 28.8 0.0 0.014 15.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|313125585|ref|YP_004035849.1| - 1.1e-06 28.7 0.0 0.049 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Arch_ATPase PF01637.13 gi|313125585|ref|YP_004035849.1| - 3.3e-06 26.9 0.1 0.054 13.1 0.0 3.7 2 2 1 3 3 3 1 Archaeal ATPase NB-ARC PF00931.17 gi|313125585|ref|YP_004035849.1| - 4.2e-06 25.8 0.0 0.032 13.0 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|313125585|ref|YP_004035849.1| - 4.3e-06 26.0 0.2 0.16 11.1 0.0 3.3 3 0 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|313125585|ref|YP_004035849.1| - 6.1e-06 25.5 0.8 0.43 9.6 0.0 3.7 2 1 1 3 3 3 2 KaiC ABC_tran PF00005.22 gi|313125585|ref|YP_004035849.1| - 8.8e-06 26.0 0.0 0.18 12.0 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|313125585|ref|YP_004035849.1| - 9.3e-06 25.2 0.0 0.15 11.7 0.0 2.5 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|313125585|ref|YP_004035849.1| - 9.3e-06 24.7 0.0 0.13 11.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|313125585|ref|YP_004035849.1| - 1.4e-05 25.1 0.0 0.27 11.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|313125585|ref|YP_004035849.1| - 5e-05 22.9 0.2 0.13 11.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|313125585|ref|YP_004035849.1| - 5.5e-05 22.3 0.1 0.28 10.0 0.0 2.4 2 1 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|313125585|ref|YP_004035849.1| - 5.9e-05 22.9 0.0 0.3 10.9 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase NACHT PF05729.7 gi|313125585|ref|YP_004035849.1| - 6.3e-05 22.6 0.3 0.26 10.9 0.0 3.6 4 0 0 4 4 4 1 NACHT domain AAA_11 PF13086.1 gi|313125585|ref|YP_004035849.1| - 0.00012 21.7 0.0 0.5 9.9 0.0 2.5 2 1 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|313125585|ref|YP_004035849.1| - 0.00014 20.8 0.1 0.17 10.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|313125585|ref|YP_004035849.1| - 0.00032 20.3 0.0 0.88 9.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|313125585|ref|YP_004035849.1| - 0.00034 20.3 0.6 1.8 8.2 0.0 3.5 3 1 1 4 4 3 2 NTPase KAP_NTPase PF07693.9 gi|313125585|ref|YP_004035849.1| - 0.0014 17.6 0.1 2.3 7.1 0.0 3.2 2 2 0 3 3 3 1 KAP family P-loop domain ResIII PF04851.10 gi|313125585|ref|YP_004035849.1| - 0.0019 18.0 0.0 2.2 8.0 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UPF0079 PF02367.12 gi|313125585|ref|YP_004035849.1| - 0.003 17.1 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|313125585|ref|YP_004035849.1| - 0.0038 16.8 0.0 2.4 7.7 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein IPT PF01745.11 gi|313125585|ref|YP_004035849.1| - 0.0042 16.3 1.0 1 8.4 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase Cytidylate_kin2 PF13189.1 gi|313125585|ref|YP_004035849.1| - 0.0048 16.8 0.0 1.8 8.4 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family ATP-synt_ab PF00006.20 gi|313125585|ref|YP_004035849.1| - 0.0051 16.3 0.0 1.9 7.9 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain KTI12 PF08433.5 gi|313125585|ref|YP_004035849.1| - 0.0095 15.1 0.0 11 5.1 0.0 3.3 3 0 0 3 3 3 0 Chromatin associated protein KTI12 AFG1_ATPase PF03969.11 gi|313125585|ref|YP_004035849.1| - 0.012 14.4 0.0 2 7.1 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase T2SE PF00437.15 gi|313125585|ref|YP_004035849.1| - 0.02 13.7 0.0 5.5 5.8 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein CPT PF07931.7 gi|313125585|ref|YP_004035849.1| - 0.021 14.4 0.0 3 7.4 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Guanylate_kin PF00625.16 gi|313125585|ref|YP_004035849.1| - 0.024 14.1 0.2 39 3.6 0.0 3.6 3 1 1 4 4 3 0 Guanylate kinase Torsin PF06309.6 gi|313125585|ref|YP_004035849.1| - 0.024 14.5 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Viral_helicase1 PF01443.13 gi|313125585|ref|YP_004035849.1| - 0.032 13.7 0.0 2.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|313125585|ref|YP_004035849.1| - 0.061 13.2 0.1 0.56 10.1 0.0 2.4 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain AAA_23 PF13476.1 gi|313125585|ref|YP_004035849.1| - 0.18 12.1 0.6 19 5.5 0.0 3.0 2 1 1 3 3 3 0 AAA domain DUF111 PF01969.12 gi|313125586|ref|YP_004035850.1| - 9.7e-130 432.7 15.4 2e-128 428.4 10.7 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF111 DUF460 PF04312.8 gi|313125587|ref|YP_004035851.1| - 0.038 13.5 2.4 0.055 12.9 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF460) Rad51 PF08423.6 gi|313125588|ref|YP_004035852.1| - 2.6e-30 105.1 0.1 3.1e-30 104.9 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|313125588|ref|YP_004035852.1| - 9.8e-18 64.2 0.2 1.4e-17 63.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain Zot PF05707.7 gi|313125588|ref|YP_004035852.1| - 7.4e-13 48.4 0.0 8.4e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|313125588|ref|YP_004035852.1| - 4.9e-12 45.4 0.0 1e-11 44.4 0.0 1.5 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|313125588|ref|YP_004035852.1| - 6.4e-12 45.1 0.6 1.1e-11 44.4 0.4 1.3 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|313125588|ref|YP_004035852.1| - 0.00024 20.7 0.2 0.00061 19.5 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|313125588|ref|YP_004035852.1| - 0.00083 18.3 0.0 0.002 17.0 0.0 1.6 1 1 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|313125588|ref|YP_004035852.1| - 0.0015 18.0 0.1 0.13 11.6 0.0 2.3 2 1 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|313125588|ref|YP_004035852.1| - 0.0022 17.9 0.4 0.003 17.5 0.3 1.2 1 0 0 1 1 1 1 AAA ATPase domain CobU PF02283.11 gi|313125588|ref|YP_004035852.1| - 0.0032 16.9 1.1 0.025 14.0 0.8 2.0 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_24 PF13479.1 gi|313125588|ref|YP_004035852.1| - 0.0093 15.5 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|313125588|ref|YP_004035852.1| - 0.014 14.7 0.3 0.058 12.7 0.0 1.9 1 1 1 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|313125588|ref|YP_004035852.1| - 0.025 13.6 0.0 0.046 12.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|313125588|ref|YP_004035852.1| - 0.042 14.0 0.1 0.097 12.8 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAXNEB PF05625.6 gi|313125588|ref|YP_004035852.1| - 0.054 12.3 0.1 0.085 11.6 0.1 1.2 1 0 0 1 1 1 0 PAXNEB protein AAA_30 PF13604.1 gi|313125588|ref|YP_004035852.1| - 0.058 12.9 1.6 0.06 12.9 0.2 1.6 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|313125588|ref|YP_004035852.1| - 0.089 11.9 0.0 0.23 10.6 0.0 1.5 1 1 0 1 1 1 0 Chromatin associated protein KTI12 Polysacc_deac_2 PF04748.8 gi|313125588|ref|YP_004035852.1| - 0.094 11.7 0.7 0.9 8.5 0.2 2.3 1 1 0 1 1 1 0 Divergent polysaccharide deacetylase Arch_ATPase PF01637.13 gi|313125588|ref|YP_004035852.1| - 0.15 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase CBS PF00571.23 gi|313125589|ref|YP_004035853.1| - 4.1e-44 148.0 12.3 3e-16 58.9 0.2 4.5 5 0 0 5 5 5 4 CBS domain Ribosomal_S30AE PF02482.14 gi|313125589|ref|YP_004035853.1| - 0.00096 19.5 0.7 0.01 16.2 0.1 2.7 3 0 0 3 3 3 1 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_L9_C PF03948.9 gi|313125589|ref|YP_004035853.1| - 0.054 13.5 0.8 1.9 8.6 0.0 3.0 3 1 1 4 4 4 0 Ribosomal protein L9, C-terminal domain Peptidase_S8 PF00082.17 gi|313125590|ref|YP_004035854.1| - 1.2e-26 93.5 0.9 1.8e-16 60.1 0.0 2.3 2 0 0 2 2 2 2 Subtilase family HTH_20 PF12840.2 gi|313125591|ref|YP_004035855.1| - 1.1e-15 57.2 0.0 1.8e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313125591|ref|YP_004035855.1| - 1.9e-06 27.4 0.0 3.7e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313125591|ref|YP_004035855.1| - 7.8e-06 25.4 0.1 3e-05 23.5 0.0 2.0 3 0 0 3 3 3 1 MarR family PBP_like_2 PF12849.2 gi|313125591|ref|YP_004035855.1| - 0.0015 18.0 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain HTH_24 PF13412.1 gi|313125591|ref|YP_004035855.1| - 0.002 17.4 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|313125591|ref|YP_004035855.1| - 0.0076 15.8 0.0 0.032 13.8 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313125591|ref|YP_004035855.1| - 0.035 13.7 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|313125591|ref|YP_004035855.1| - 0.044 13.6 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|313125591|ref|YP_004035855.1| - 0.085 13.1 0.1 0.63 10.4 0.0 2.3 3 0 0 3 3 3 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|313125591|ref|YP_004035855.1| - 0.11 11.9 0.0 0.32 10.4 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 A2M_N PF01835.14 gi|313125592|ref|YP_004035856.1| - 0.00074 19.7 0.9 0.0071 16.5 0.1 2.8 2 2 1 3 3 3 1 MG2 domain DUF4402 PF14352.1 gi|313125592|ref|YP_004035856.1| - 1.1 9.6 10.3 0.073 13.5 0.7 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4402) Polysacc_synt_C PF14667.1 gi|313125593|ref|YP_004035857.1| - 0.14 11.9 1.5 0.16 11.7 1.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Glyco_trans_1_3 PF13528.1 gi|313125594|ref|YP_004035858.1| - 1.4e-13 50.7 0.0 3e-09 36.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_transf_4 PF13439.1 gi|313125594|ref|YP_004035858.1| - 0.047 13.4 0.0 0.2 11.3 0.0 2.0 1 1 0 1 1 1 0 Glycosyltransferase Family 4 OrfB_IS605 PF01385.14 gi|313125595|ref|YP_004035859.1| - 7.8e-57 192.2 0.0 1.1e-56 191.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313125595|ref|YP_004035859.1| - 9.9e-19 66.7 0.4 1.9e-18 65.8 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|313125595|ref|YP_004035859.1| - 0.0074 15.5 0.0 0.016 14.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|313125595|ref|YP_004035859.1| - 1.1 8.6 4.1 2.4 7.5 2.8 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Glyco_transf_21 PF13506.1 gi|313125597|ref|YP_004035861.1| - 5e-10 38.9 0.2 2.3e-09 36.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|313125597|ref|YP_004035861.1| - 6.2e-06 25.9 0.9 1.8e-05 24.5 0.6 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313125597|ref|YP_004035861.1| - 0.0021 17.9 0.1 0.0047 16.7 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HA PF03457.9 gi|313125598|ref|YP_004035862.1| - 0.75 9.9 3.5 0.57 10.3 1.2 1.7 1 1 1 2 2 2 0 Helicase associated domain Cob_adeno_trans PF01923.13 gi|313125599|ref|YP_004035863.1| - 1.4e-58 197.3 0.0 1.5e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase GST_N_3 PF13417.1 gi|313125600|ref|YP_004035864.1| - 1.9e-15 56.8 0.0 2.4e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|313125600|ref|YP_004035864.1| - 2.7e-15 56.1 0.0 3.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|313125600|ref|YP_004035864.1| - 2.3e-13 49.9 0.0 2.7e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|313125600|ref|YP_004035864.1| - 2.3e-06 27.6 0.0 2.7e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|313125600|ref|YP_004035864.1| - 0.0052 17.0 0.1 0.0061 16.7 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|313125600|ref|YP_004035864.1| - 0.0096 15.7 0.1 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|313125600|ref|YP_004035864.1| - 0.012 15.8 0.1 0.015 15.5 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain ArsC PF03960.10 gi|313125600|ref|YP_004035864.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.4 1 1 1 2 2 2 0 ArsC family AhpC-TSA PF00578.16 gi|313125600|ref|YP_004035864.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA family Sof1 PF04158.9 gi|313125600|ref|YP_004035864.1| - 0.14 12.2 0.0 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 Sof1-like domain Big_3_4 PF13754.1 gi|313125601|ref|YP_004035865.1| - 6.2e-25 87.2 332.9 4.1e-07 30.2 10.1 22.9 18 6 4 22 22 22 10 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|313125601|ref|YP_004035865.1| - 3.9e-17 62.6 17.9 0.074 13.1 0.1 13.7 6 3 4 12 12 12 4 Domain of unknown function (DUF4625) SWM_repeat PF13753.1 gi|313125601|ref|YP_004035865.1| - 4.5e-10 39.0 296.2 1.3e-05 24.3 41.4 8.3 2 1 5 8 8 8 5 Putative flagellar system-associated repeat Big_3_3 PF13750.1 gi|313125601|ref|YP_004035865.1| - 2.1e-07 30.4 76.5 0.0039 16.6 2.8 11.5 9 3 2 11 11 11 8 Bacterial Ig-like domain (group 3) Big_3_2 PF12245.3 gi|313125601|ref|YP_004035865.1| - 0.00051 19.5 20.2 0.075 12.6 0.1 7.3 9 0 0 9 9 9 2 Bacterial Ig-like domain (group 3) Y_Y_Y PF07495.8 gi|313125601|ref|YP_004035865.1| - 0.022 14.4 4.0 6.1 6.6 0.0 4.5 5 0 0 5 5 5 0 Y_Y_Y domain DUF756 PF05506.7 gi|313125601|ref|YP_004035865.1| - 4.3 7.8 23.4 0.86 10.1 0.1 6.9 8 0 0 8 8 8 0 Domain of unknown function (DUF756) 4HBT PF03061.17 gi|313125602|ref|YP_004035866.1| - 2.9e-18 65.7 0.1 4.1e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|313125602|ref|YP_004035866.1| - 0.0047 17.3 0.0 0.0058 17.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 2-Hacid_dh_C PF02826.14 gi|313125603|ref|YP_004035867.1| - 2.1e-50 170.3 0.0 2.6e-50 170.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|313125603|ref|YP_004035867.1| - 1.9e-08 33.8 0.0 2.3e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|313125603|ref|YP_004035867.1| - 5.6e-07 29.5 0.0 9e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|313125603|ref|YP_004035867.1| - 3.4e-05 24.1 0.0 6.5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|313125603|ref|YP_004035867.1| - 0.0085 16.1 0.5 0.077 12.9 0.6 2.1 2 0 0 2 2 2 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|313125603|ref|YP_004035867.1| - 0.021 14.6 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|313125603|ref|YP_004035867.1| - 0.036 14.0 0.1 0.15 12.0 0.0 2.2 2 1 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|313125603|ref|YP_004035867.1| - 0.046 13.3 0.1 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SUI1 PF01253.17 gi|313125604|ref|YP_004035868.1| - 2.9e-19 68.6 0.1 3.2e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|313125604|ref|YP_004035868.1| - 0.083 13.1 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) zf-H2C2_2 PF13465.1 gi|313125605|ref|YP_004035869.1| - 5.3e-05 23.3 0.8 0.016 15.4 0.0 2.1 2 0 0 2 2 2 1 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|313125605|ref|YP_004035869.1| - 0.00012 21.7 1.2 0.00016 21.3 0.8 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|313125605|ref|YP_004035869.1| - 0.00047 19.9 0.5 0.89 9.4 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin Zn-ribbon_8 PF09723.5 gi|313125605|ref|YP_004035869.1| - 0.0097 15.8 0.4 1.3 9.0 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|313125605|ref|YP_004035869.1| - 0.01 15.1 0.5 0.41 10.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Ogr_Delta PF04606.7 gi|313125605|ref|YP_004035869.1| - 0.011 15.3 0.1 0.015 14.9 0.1 1.2 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|313125605|ref|YP_004035869.1| - 0.012 15.6 0.2 3.2 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|313125605|ref|YP_004035869.1| - 0.013 15.1 2.2 2.6 7.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Elf1 PF05129.8 gi|313125605|ref|YP_004035869.1| - 0.026 14.2 0.1 0.03 14.0 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|313125605|ref|YP_004035869.1| - 0.028 14.7 0.4 0.032 14.5 0.3 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2 PF00096.21 gi|313125605|ref|YP_004035869.1| - 0.038 14.3 1.4 2.9 8.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DNA_RNApol_7kD PF03604.8 gi|313125605|ref|YP_004035869.1| - 0.045 13.2 0.7 3 7.4 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|313125605|ref|YP_004035869.1| - 0.061 13.0 1.6 0.69 9.6 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2296 PF10058.4 gi|313125605|ref|YP_004035869.1| - 0.061 13.0 0.3 10 5.9 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L37ae PF01780.14 gi|313125605|ref|YP_004035869.1| - 0.064 13.1 1.2 0.22 11.4 0.8 1.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-DNA_Pol PF08996.5 gi|313125605|ref|YP_004035869.1| - 0.092 12.0 0.1 0.1 11.9 0.1 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger PHD PF00628.24 gi|313125605|ref|YP_004035869.1| - 0.093 12.4 1.5 2.7 7.7 0.1 2.1 2 0 0 2 2 2 0 PHD-finger zf-MIZ PF02891.15 gi|313125605|ref|YP_004035869.1| - 0.099 12.1 0.5 3.5 7.2 0.1 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zinc_ribbon_4 PF13717.1 gi|313125605|ref|YP_004035869.1| - 0.12 12.0 1.7 4.6 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313125605|ref|YP_004035869.1| - 0.13 11.4 0.6 10 5.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313125605|ref|YP_004035869.1| - 0.14 11.7 2.1 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|313125605|ref|YP_004035869.1| - 0.18 11.4 0.5 7.6 6.2 0.0 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|313125605|ref|YP_004035869.1| - 0.24 11.0 2.4 4.8 6.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) NCD3G PF07562.9 gi|313125605|ref|YP_004035869.1| - 0.38 10.5 4.3 1.1 9.0 0.1 2.1 1 1 1 2 2 2 0 Nine Cysteines Domain of family 3 GPCR zf-Mss51 PF13824.1 gi|313125605|ref|YP_004035869.1| - 1.2 9.0 4.3 14 5.6 2.9 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|313125605|ref|YP_004035869.1| - 1.3 9.1 3.7 8.3 6.5 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF4379 PF14311.1 gi|313125605|ref|YP_004035869.1| - 4.7 7.0 7.7 34 4.3 5.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) GDC-P PF02347.11 gi|313125606|ref|YP_004035870.1| - 4e-10 38.9 0.0 1.5e-07 30.4 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|313125606|ref|YP_004035870.1| - 3.1e-09 36.0 0.0 4.9e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|313125606|ref|YP_004035870.1| - 0.0031 16.7 0.0 0.0052 15.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|313125606|ref|YP_004035870.1| - 0.025 13.5 0.0 0.034 13.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II GDC-P PF02347.11 gi|313125607|ref|YP_004035871.1| - 9.6e-113 377.0 0.0 1.1e-112 376.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|313125607|ref|YP_004035871.1| - 6.2e-06 25.1 0.1 9.5e-06 24.5 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|313125607|ref|YP_004035871.1| - 0.00013 20.3 0.0 0.0002 19.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme RtcR PF06956.6 gi|313125607|ref|YP_004035871.1| - 0.024 13.9 0.0 0.044 13.0 0.0 1.4 1 0 0 1 1 1 0 Regulator of RNA terminal phosphate cyclase GCV_H PF01597.14 gi|313125608|ref|YP_004035872.1| - 3e-45 152.8 0.0 3.3e-45 152.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|313125608|ref|YP_004035872.1| - 0.0011 18.5 0.2 0.0027 17.2 0.1 1.7 1 1 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|313125608|ref|YP_004035872.1| - 0.0019 17.8 0.0 0.011 15.3 0.0 1.9 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.4 gi|313125608|ref|YP_004035872.1| - 0.011 15.4 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) GCV_T PF01571.16 gi|313125609|ref|YP_004035873.1| - 1.2e-63 214.2 0.1 1.6e-63 213.8 0.1 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|313125609|ref|YP_004035873.1| - 2e-27 95.0 0.1 3.7e-27 94.1 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|313125609|ref|YP_004035873.1| - 0.00064 19.6 0.0 0.03 14.3 0.0 2.3 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus SoxG PF04268.7 gi|313125609|ref|YP_004035873.1| - 0.058 13.2 0.1 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Sarcosine oxidase, gamma subunit family MerE PF05052.7 gi|313125610|ref|YP_004035874.1| - 0.047 13.6 1.9 0.055 13.4 1.3 1.2 1 0 0 1 1 1 0 MerE protein DUF4173 PF13777.1 gi|313125610|ref|YP_004035874.1| - 0.2 10.9 2.2 0.23 10.7 1.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) Peptidase_U4 PF03419.8 gi|313125610|ref|YP_004035874.1| - 0.22 10.5 1.5 0.22 10.5 1.1 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA TPPK_C PF12555.3 gi|313125610|ref|YP_004035874.1| - 1.4 8.7 8.6 0.28 10.9 1.4 2.0 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal HATPase_c PF02518.21 gi|313125612|ref|YP_004035876.1| - 2.2e-21 75.6 0.0 4.2e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|313125612|ref|YP_004035876.1| - 1.8e-07 30.7 0.0 3.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|313125612|ref|YP_004035876.1| - 1.8e-07 30.9 0.0 3.7e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|313125612|ref|YP_004035876.1| - 0.00055 19.6 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313125612|ref|YP_004035876.1| - 0.0017 18.3 0.6 0.0047 16.9 0.4 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain MarR_2 PF12802.2 gi|313125613|ref|YP_004035877.1| - 3.5e-05 23.3 0.1 9.8e-05 21.9 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|313125613|ref|YP_004035877.1| - 5.9e-05 22.6 0.0 0.00016 21.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HemN_C PF06969.11 gi|313125613|ref|YP_004035877.1| - 0.00026 20.9 0.0 0.00093 19.2 0.0 2.0 1 0 0 1 1 1 1 HemN C-terminal domain HTH_24 PF13412.1 gi|313125613|ref|YP_004035877.1| - 0.00053 19.3 0.0 0.0013 18.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|313125613|ref|YP_004035877.1| - 0.00068 19.9 0.6 0.0023 18.1 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1724 PF08350.5 gi|313125613|ref|YP_004035877.1| - 0.0011 18.4 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|313125613|ref|YP_004035877.1| - 0.0014 18.4 1.8 0.46 10.3 0.1 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313125613|ref|YP_004035877.1| - 0.025 14.1 0.6 0.099 12.2 0.0 2.3 3 0 0 3 3 3 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|313125613|ref|YP_004035877.1| - 0.059 12.8 0.1 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit EamA PF00892.15 gi|313125614|ref|YP_004035884.1| - 3.4e-34 117.5 24.4 5.8e-19 68.3 4.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|313125614|ref|YP_004035884.1| - 1.8e-06 28.0 2.4 1.8e-06 28.0 1.7 3.8 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|313125614|ref|YP_004035884.1| - 0.00023 20.8 14.9 0.053 13.1 0.4 2.5 2 1 0 2 2 2 2 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|313125614|ref|YP_004035884.1| - 0.13 12.1 2.8 4.5 7.1 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 MMR_HSR1 PF01926.18 gi|313125615|ref|YP_004035885.1| - 5.2e-15 55.4 0.3 5.1e-14 52.2 0.1 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|313125615|ref|YP_004035885.1| - 1.7e-10 40.8 0.0 3.7e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.22 gi|313125615|ref|YP_004035885.1| - 2.4e-09 36.8 0.8 6e-09 35.6 0.2 1.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|313125615|ref|YP_004035885.1| - 0.0041 16.4 0.3 0.7 9.1 0.2 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_16 PF13191.1 gi|313125615|ref|YP_004035885.1| - 0.016 15.1 0.3 0.096 12.6 0.2 2.4 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|313125615|ref|YP_004035885.1| - 0.026 14.9 0.1 0.15 12.5 0.1 2.3 1 1 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|313125615|ref|YP_004035885.1| - 0.03 14.6 0.0 0.4 10.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|313125615|ref|YP_004035885.1| - 0.052 13.2 0.0 0.2 11.3 0.0 2.1 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|313125615|ref|YP_004035885.1| - 0.056 13.3 0.2 0.24 11.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313125615|ref|YP_004035885.1| - 0.067 14.0 0.0 0.83 10.4 0.0 2.4 2 2 0 2 2 2 0 AAA domain Arf PF00025.16 gi|313125615|ref|YP_004035885.1| - 0.086 12.0 0.3 2.2 7.5 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family DUF258 PF03193.11 gi|313125615|ref|YP_004035885.1| - 0.11 11.7 0.1 0.54 9.4 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function, DUF258 DUF1700 PF08006.6 gi|313125616|ref|YP_004035886.1| - 0.092 12.0 4.7 2.7 7.2 2.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) NDUF_B12 PF08122.7 gi|313125616|ref|YP_004035886.1| - 0.099 12.3 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family 7TM-7TMR_HD PF07698.6 gi|313125616|ref|YP_004035886.1| - 0.61 9.5 10.8 1.5 8.2 7.5 1.7 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase Tmemb_14 PF03647.8 gi|313125616|ref|YP_004035886.1| - 0.66 10.4 9.5 0.13 12.6 3.1 2.1 1 1 1 2 2 2 0 Transmembrane proteins 14C DUF872 PF05915.7 gi|313125616|ref|YP_004035886.1| - 0.79 9.6 4.5 0.12 12.1 0.3 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) EpuA PF11772.3 gi|313125616|ref|YP_004035886.1| - 6.6 6.2 8.9 7.1 6.1 1.5 2.6 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta UbiA PF01040.13 gi|313125616|ref|YP_004035886.1| - 8.2 5.5 18.6 1.7 7.8 6.3 2.0 1 1 1 2 2 2 0 UbiA prenyltransferase family GTP_EFTU PF00009.22 gi|313125617|ref|YP_004035887.1| - 4.6e-58 195.7 0.0 5.8e-58 195.4 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|313125617|ref|YP_004035887.1| - 9.9e-31 105.8 0.2 7.2e-30 103.0 0.0 2.3 3 0 0 3 3 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|313125617|ref|YP_004035887.1| - 2e-18 66.2 1.4 7.6e-18 64.3 0.6 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|313125617|ref|YP_004035887.1| - 6.3e-09 35.7 0.0 1.4e-08 34.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|313125617|ref|YP_004035887.1| - 2.7e-05 23.7 0.1 0.0001 21.8 0.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|313125617|ref|YP_004035887.1| - 4.4e-05 23.9 0.7 0.0016 18.9 0.0 3.3 2 1 1 3 3 3 1 Miro-like protein Ras PF00071.17 gi|313125617|ref|YP_004035887.1| - 0.00076 18.9 1.6 0.003 16.9 0.5 2.1 2 1 0 2 2 2 1 Ras family Dynamin_N PF00350.18 gi|313125617|ref|YP_004035887.1| - 0.0016 18.2 0.1 0.47 10.2 0.1 2.5 1 1 0 1 1 1 1 Dynamin family Gtr1_RagA PF04670.7 gi|313125617|ref|YP_004035887.1| - 0.0017 17.5 0.1 0.36 9.9 0.0 2.2 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region Septin PF00735.13 gi|313125617|ref|YP_004035887.1| - 0.0043 16.0 0.3 0.01 14.9 0.0 1.6 2 0 0 2 2 2 1 Septin FeoB_N PF02421.13 gi|313125617|ref|YP_004035887.1| - 0.014 14.6 0.7 0.27 10.4 0.3 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Hemolysin_N PF12563.3 gi|313125617|ref|YP_004035887.1| - 0.021 14.2 0.1 0.033 13.6 0.1 1.2 1 0 0 1 1 1 0 Hemolytic toxin N terminal SRPRB PF09439.5 gi|313125617|ref|YP_004035887.1| - 0.022 14.0 0.1 0.41 9.8 0.1 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit NTP_transf_3 PF12804.2 gi|313125617|ref|YP_004035887.1| - 0.043 13.9 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 MobA-like NTP transferase domain Peptidase_S8 PF00082.17 gi|313125618|ref|YP_004035888.1| - 4.9e-57 193.2 14.2 7.6e-57 192.6 9.9 1.3 1 0 0 1 1 1 1 Subtilase family PPC PF04151.10 gi|313125618|ref|YP_004035888.1| - 0.00024 21.9 0.9 0.00024 21.9 0.6 3.7 3 2 0 3 3 3 1 Bacterial pre-peptidase C-terminal domain NYN PF01936.13 gi|313125619|ref|YP_004035889.1| - 2.3e-19 70.1 0.1 3.1e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.1 gi|313125619|ref|YP_004035889.1| - 0.0001 21.7 0.1 0.00013 21.3 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain B12-binding PF02310.14 gi|313125619|ref|YP_004035889.1| - 0.028 14.2 0.1 0.05 13.4 0.1 1.5 1 0 0 1 1 1 0 B12 binding domain AP_endonuc_2 PF01261.19 gi|313125619|ref|YP_004035889.1| - 0.067 12.4 0.3 0.13 11.5 0.2 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel TatD_DNase PF01026.16 gi|313125620|ref|YP_004035890.1| - 6.8e-20 71.3 0.0 4.9e-18 65.2 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.4 gi|313125621|ref|YP_004035891.1| - 3.1e-70 235.6 8.1 3.6e-70 235.4 5.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) REJ PF02010.10 gi|313125623|ref|YP_004035893.1| - 2.2e-15 55.9 7.7 6.1e-05 21.5 0.9 3.9 2 2 1 3 3 3 3 REJ domain DUF1628 PF07790.6 gi|313125623|ref|YP_004035893.1| - 1.4e-05 25.7 2.9 0.0003 21.4 0.1 3.4 3 1 0 4 4 4 1 Protein of unknown function (DUF1628) PKD PF00801.15 gi|313125623|ref|YP_004035893.1| - 0.056 13.2 33.7 0.79 9.5 6.5 5.5 4 2 0 4 4 4 0 PKD domain BiPBP_C PF06832.7 gi|313125623|ref|YP_004035893.1| - 0.97 9.4 6.2 17 5.3 0.1 3.8 3 1 1 4 4 4 0 Penicillin-Binding Protein C-terminus Family Lumazine_bd PF12870.2 gi|313125623|ref|YP_004035893.1| - 4.6 7.3 4.5 14 5.7 0.2 2.9 3 0 0 3 3 3 0 Lumazine-binding domain HMG_CoA_synt_N PF01154.12 gi|313125624|ref|YP_004035894.1| - 8.7e-26 90.5 0.0 1.5e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|313125624|ref|YP_004035894.1| - 2.5e-22 79.6 0.0 6.3e-22 78.3 0.0 1.6 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal DUF1257 PF06868.6 gi|313125624|ref|YP_004035894.1| - 0.04 13.8 0.1 0.087 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1257) HTH_31 PF13560.1 gi|313125625|ref|YP_004035895.1| - 3.1e-10 40.1 0.5 1.1e-09 38.3 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|313125625|ref|YP_004035895.1| - 1.2e-08 34.8 0.0 2.6e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|313125625|ref|YP_004035895.1| - 1.4e-08 34.4 0.0 3.6e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.7 gi|313125625|ref|YP_004035895.1| - 0.013 15.1 0.0 0.42 10.3 0.0 2.6 2 0 0 2 2 2 0 HTH domain HTH_37 PF13744.1 gi|313125625|ref|YP_004035895.1| - 0.03 14.1 0.0 0.087 12.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|313125625|ref|YP_004035895.1| - 0.081 13.1 0.0 0.32 11.2 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF457 PF04307.9 gi|313125626|ref|YP_004035896.1| - 4.5e-10 39.0 3.0 5.3e-10 38.8 2.1 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) GATase_7 PF13537.1 gi|313125626|ref|YP_004035896.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase domain Herpes_UL45 PF05473.7 gi|313125626|ref|YP_004035896.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 UL45 protein Acetyltransf_1 PF00583.19 gi|313125627|ref|YP_004035897.1| - 1e-13 51.0 0.0 2e-13 50.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313125627|ref|YP_004035897.1| - 1.2e-10 41.5 0.0 1.6e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313125627|ref|YP_004035897.1| - 1e-08 35.1 0.0 1.4e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313125627|ref|YP_004035897.1| - 2.7e-08 34.0 0.0 4.5e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313125627|ref|YP_004035897.1| - 3.2e-08 33.6 0.0 4.8e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125627|ref|YP_004035897.1| - 4.9e-08 33.0 0.0 6.9e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125627|ref|YP_004035897.1| - 2.7e-06 27.1 0.0 4.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|313125627|ref|YP_004035897.1| - 8.6e-05 22.3 0.0 0.00023 21.0 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125627|ref|YP_004035897.1| - 0.019 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein RseC_MucC PF04246.7 gi|313125628|ref|YP_004035898.1| - 0.24 10.9 8.0 0.18 11.3 3.0 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Acetyltransf_3 PF13302.1 gi|313125629|ref|YP_004035899.1| - 7.3e-20 71.5 0.0 9.4e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313125629|ref|YP_004035899.1| - 0.0043 17.0 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|313125630|ref|YP_004035900.1| - 3.4e-21 75.9 0.3 7.6e-21 74.7 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313125630|ref|YP_004035900.1| - 0.07 13.0 0.0 0.09 12.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ELM2 PF01448.19 gi|313125630|ref|YP_004035900.1| - 0.1 13.2 0.2 1.2 9.8 0.1 2.3 2 0 0 2 2 2 0 ELM2 domain Pyridox_ox_2 PF12900.2 gi|313125631|ref|YP_004035901.1| - 7.9e-20 71.1 0.2 9.1e-20 70.9 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|313125631|ref|YP_004035901.1| - 0.004 17.1 0.0 0.0058 16.6 0.0 1.4 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase OrfB_Zn_ribbon PF07282.6 gi|313125632|ref|YP_004035902.1| - 2e-22 78.6 1.6 3.5e-21 74.6 0.4 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HMA PF00403.21 gi|313125632|ref|YP_004035902.1| - 1.9e-09 37.4 0.1 4.3e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Heavy-metal-associated domain HypA PF01155.14 gi|313125632|ref|YP_004035902.1| - 0.027 14.1 1.4 0.08 12.6 0.2 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|313125632|ref|YP_004035902.1| - 0.71 9.7 6.8 4.4 7.2 2.7 2.2 2 0 0 2 2 2 0 Double zinc ribbon Hydrolase PF00702.21 gi|313125633|ref|YP_004035903.1| - 1.8e-49 169.0 5.3 3.1e-49 168.2 3.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|313125633|ref|YP_004035903.1| - 2.3e-47 160.9 0.1 5.3e-47 159.7 0.0 1.7 2 0 0 2 2 2 1 E1-E2 ATPase HAD PF12710.2 gi|313125633|ref|YP_004035903.1| - 2.7e-13 50.4 0.1 6.1e-13 49.3 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|313125633|ref|YP_004035903.1| - 1.6e-06 28.1 0.4 6e-06 26.3 0.0 2.1 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|313125633|ref|YP_004035903.1| - 7.9e-06 25.6 0.5 0.00019 21.1 0.3 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF2721 PF11026.3 gi|313125633|ref|YP_004035903.1| - 0.21 11.2 0.0 0.21 11.2 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2721) HTH_20 PF12840.2 gi|313125634|ref|YP_004035904.1| - 1.6e-12 47.0 0.1 2.7e-12 46.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313125634|ref|YP_004035904.1| - 1.5e-09 37.3 0.4 8.2e-09 34.9 0.3 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|313125634|ref|YP_004035904.1| - 3.2e-05 23.5 1.5 4.4e-05 23.1 0.3 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain BCDHK_Adom3 PF10436.4 gi|313125634|ref|YP_004035904.1| - 0.004 16.6 0.3 0.0082 15.6 0.1 1.4 1 1 0 1 1 1 1 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase TFIIE_alpha PF02002.12 gi|313125634|ref|YP_004035904.1| - 0.0042 16.5 2.0 0.0097 15.3 0.7 2.0 1 1 1 2 2 2 1 TFIIE alpha subunit FUR PF01475.14 gi|313125634|ref|YP_004035904.1| - 0.008 16.0 0.7 0.017 15.0 0.4 1.6 1 1 0 1 1 1 1 Ferric uptake regulator family PqqD PF05402.7 gi|313125634|ref|YP_004035904.1| - 0.01 15.8 2.5 0.077 13.0 0.1 2.6 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Penicillinase_R PF03965.11 gi|313125634|ref|YP_004035904.1| - 0.028 14.4 0.5 0.11 12.5 0.0 2.1 2 1 0 2 2 2 0 Penicillinase repressor TrmB PF01978.14 gi|313125634|ref|YP_004035904.1| - 0.066 12.9 0.0 0.18 11.5 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ArsR PF09824.4 gi|313125634|ref|YP_004035904.1| - 0.088 12.1 0.2 0.16 11.2 0.1 1.5 1 1 0 1 1 1 0 ArsR transcriptional regulator PadR PF03551.9 gi|313125634|ref|YP_004035904.1| - 0.12 12.1 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_32 PF13565.1 gi|313125634|ref|YP_004035904.1| - 0.14 12.9 0.5 0.86 10.4 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain N6_Mtase PF02384.11 gi|313125635|ref|YP_004035905.1| - 1.6e-16 60.3 0.0 3.7e-16 59.1 0.0 1.5 2 0 0 2 2 2 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|313125635|ref|YP_004035905.1| - 3.1e-15 56.2 0.0 6.3e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|313125635|ref|YP_004035905.1| - 2.8e-10 40.4 0.0 6.4e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|313125635|ref|YP_004035905.1| - 4e-07 29.7 0.0 6.9e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|313125635|ref|YP_004035905.1| - 0.00015 21.1 0.0 0.00032 20.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|313125635|ref|YP_004035905.1| - 0.00045 19.8 0.0 0.0012 18.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain TaqI_C PF12950.2 gi|313125635|ref|YP_004035905.1| - 0.0024 17.5 0.0 0.0063 16.2 0.0 1.7 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain RloB PF13707.1 gi|313125635|ref|YP_004035905.1| - 0.075 12.6 0.9 0.7 9.5 0.0 3.0 4 0 0 4 4 4 0 RloB-like protein DUF217 PF02697.9 gi|313125636|ref|YP_004035906.1| - 0.003 17.7 0.0 0.0035 17.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 IBD PF10416.4 gi|313125636|ref|YP_004035906.1| - 0.036 13.8 0.1 0.037 13.8 0.1 1.0 1 0 0 1 1 1 0 Transcription-initiator DNA-binding domain IBD RE_XamI PF09572.5 gi|313125637|ref|YP_004035907.1| - 6.5e-15 55.2 0.1 8.8e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 XamI restriction endonuclease DUF3055 PF11256.3 gi|313125637|ref|YP_004035907.1| - 0.054 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3055) AAA PF00004.24 gi|313125638|ref|YP_004035908.1| - 6.6e-11 42.5 0.2 3.5e-10 40.1 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313125638|ref|YP_004035908.1| - 2.3e-06 27.7 0.0 8.2e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|313125638|ref|YP_004035908.1| - 4.2e-06 26.4 1.5 8.8e-06 25.4 1.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|313125638|ref|YP_004035908.1| - 6.5e-06 25.3 0.0 1.1e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|313125638|ref|YP_004035908.1| - 1.3e-05 25.9 1.5 0.00027 21.7 1.1 2.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|313125638|ref|YP_004035908.1| - 1.8e-05 23.6 0.0 0.13 10.9 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|313125638|ref|YP_004035908.1| - 0.00019 20.5 0.1 0.00051 19.1 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.1 gi|313125638|ref|YP_004035908.1| - 0.00025 21.3 0.6 0.017 15.4 0.0 2.9 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|313125638|ref|YP_004035908.1| - 0.00046 20.0 0.1 0.0018 18.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|313125638|ref|YP_004035908.1| - 0.00073 19.5 0.0 0.0019 18.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313125638|ref|YP_004035908.1| - 0.0013 18.7 0.2 0.011 15.6 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|313125638|ref|YP_004035908.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|313125638|ref|YP_004035908.1| - 0.0063 15.9 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|313125638|ref|YP_004035908.1| - 0.0079 15.9 0.0 0.021 14.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|313125638|ref|YP_004035908.1| - 0.017 15.3 0.0 0.041 14.0 0.0 1.8 1 1 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.13 gi|313125638|ref|YP_004035908.1| - 0.017 14.6 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase BUD22 PF09073.5 gi|313125638|ref|YP_004035908.1| - 0.019 14.0 0.2 0.031 13.3 0.1 1.2 1 0 0 1 1 1 0 BUD22 Bac_DnaA PF00308.13 gi|313125638|ref|YP_004035908.1| - 0.027 14.1 0.0 0.25 10.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_19 PF13245.1 gi|313125638|ref|YP_004035908.1| - 0.042 13.5 0.1 0.16 11.7 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain TIP49 PF06068.8 gi|313125638|ref|YP_004035908.1| - 0.043 12.5 0.0 1.4 7.5 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus NACHT PF05729.7 gi|313125638|ref|YP_004035908.1| - 0.046 13.3 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_3 PF07726.6 gi|313125638|ref|YP_004035908.1| - 0.15 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|313125638|ref|YP_004035908.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|313125639|ref|YP_004035909.1| - 5.3e-35 120.7 0.0 6.7e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125639|ref|YP_004035909.1| - 1.3e-11 44.9 0.0 1.3e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313125639|ref|YP_004035909.1| - 7e-09 35.2 0.0 2.7e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|313125639|ref|YP_004035909.1| - 4.2e-06 26.4 0.0 0.0034 16.8 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|313125639|ref|YP_004035909.1| - 7e-06 26.1 0.2 2e-05 24.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|313125639|ref|YP_004035909.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313125639|ref|YP_004035909.1| - 0.00012 22.1 0.0 0.00047 20.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|313125639|ref|YP_004035909.1| - 0.0005 18.7 0.1 0.67 8.4 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|313125639|ref|YP_004035909.1| - 0.00092 18.4 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|313125639|ref|YP_004035909.1| - 0.0023 17.6 0.1 0.043 13.5 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_23 PF13476.1 gi|313125639|ref|YP_004035909.1| - 0.0029 17.9 0.0 0.0046 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|313125639|ref|YP_004035909.1| - 0.0036 16.9 0.0 0.0057 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|313125639|ref|YP_004035909.1| - 0.0048 16.6 0.0 0.016 14.9 0.0 1.9 2 1 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|313125639|ref|YP_004035909.1| - 0.0081 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|313125639|ref|YP_004035909.1| - 0.012 14.4 0.0 0.042 12.6 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.1 gi|313125639|ref|YP_004035909.1| - 0.016 16.0 0.3 0.04 14.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|313125639|ref|YP_004035909.1| - 0.019 14.3 0.0 0.082 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.1 gi|313125639|ref|YP_004035909.1| - 0.025 13.1 0.0 0.036 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) MobB PF03205.9 gi|313125639|ref|YP_004035909.1| - 0.029 14.0 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|313125639|ref|YP_004035909.1| - 0.037 14.2 0.4 0.93 9.7 0.1 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313125639|ref|YP_004035909.1| - 0.038 13.7 0.0 3.2 7.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|313125639|ref|YP_004035909.1| - 0.043 13.2 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 MutS domain V NACHT PF05729.7 gi|313125639|ref|YP_004035909.1| - 0.053 13.1 0.0 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|313125639|ref|YP_004035909.1| - 0.062 13.2 0.3 0.75 9.7 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.13 gi|313125639|ref|YP_004035909.1| - 0.063 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|313125639|ref|YP_004035909.1| - 0.076 12.9 0.0 0.51 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|313125639|ref|YP_004035909.1| - 0.078 11.8 0.0 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|313125639|ref|YP_004035909.1| - 0.084 13.1 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|313125639|ref|YP_004035909.1| - 0.09 11.8 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin BPD_transp_1 PF00528.17 gi|313125640|ref|YP_004035910.1| - 5.8e-20 71.5 3.8 5.8e-20 71.5 2.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_pp38 PF04846.8 gi|313125640|ref|YP_004035910.1| - 0.12 11.7 0.5 0.28 10.5 0.4 1.5 1 0 0 1 1 1 0 Herpesvirus pp38 phosphoprotein SBP_bac_3 PF00497.15 gi|313125641|ref|YP_004035911.1| - 1.5e-65 220.6 1.5 1.8e-65 220.3 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|313125641|ref|YP_004035911.1| - 1e-05 25.2 0.2 1.6e-05 24.6 0.2 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|313125641|ref|YP_004035911.1| - 0.00011 21.6 0.2 0.00053 19.4 0.1 2.2 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|313125641|ref|YP_004035911.1| - 0.008 16.1 0.5 0.008 16.1 0.4 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence OpuAC PF04069.7 gi|313125641|ref|YP_004035911.1| - 0.023 14.0 0.0 1.1 8.5 0.0 2.1 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system COX15-CtaA PF02628.10 gi|313125643|ref|YP_004035913.1| - 4.2e-27 94.8 23.5 4.2e-27 94.8 16.3 2.2 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein Peptidase_M24 PF00557.19 gi|313125644|ref|YP_004035914.1| - 5.5e-20 71.8 0.2 7.2e-20 71.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|313125644|ref|YP_004035914.1| - 3.4e-06 27.5 0.1 8.3e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain PTA_PTB PF01515.14 gi|313125645|ref|YP_004035915.1| - 3.8e-97 325.1 0.0 6.2e-97 324.4 0.0 1.3 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|313125645|ref|YP_004035915.1| - 1.5e-71 240.9 0.3 1.5e-71 240.9 0.2 1.5 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|313125645|ref|YP_004035915.1| - 1.9e-30 105.8 0.0 3.7e-28 98.3 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain HTH_19 PF12844.2 gi|313125645|ref|YP_004035915.1| - 0.11 12.6 0.1 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain TatC PF00902.13 gi|313125646|ref|YP_004035916.1| - 4.3e-09 36.0 3.0 4.3e-09 36.0 2.1 1.9 2 0 0 2 2 2 1 Sec-independent protein translocase protein (TatC) TauE PF01925.14 gi|313125647|ref|YP_004035917.1| - 4.5e-06 26.2 8.5 5.3e-06 26.0 5.9 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3816 PF12822.2 gi|313125647|ref|YP_004035917.1| - 0.23 11.3 5.3 0.26 11.1 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) OrfB_IS605 PF01385.14 gi|313125648|ref|YP_004035918.1| - 1.5e-47 161.8 0.0 2e-47 161.5 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313125648|ref|YP_004035918.1| - 1.6e-21 75.7 0.8 4.3e-21 74.3 0.6 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|313125648|ref|YP_004035918.1| - 0.0081 15.5 2.3 0.017 14.5 1.6 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain RRN7 PF11781.3 gi|313125648|ref|YP_004035918.1| - 0.09 12.2 1.8 0.33 10.4 1.2 2.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_Tnp_IS1595 PF12760.2 gi|313125648|ref|YP_004035918.1| - 0.11 12.2 1.7 0.33 10.7 1.2 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|313125648|ref|YP_004035918.1| - 0.13 11.5 1.2 0.3 10.4 0.9 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding C1_3 PF07649.7 gi|313125648|ref|YP_004035918.1| - 0.25 11.3 2.7 0.24 11.4 0.5 2.1 2 0 0 2 2 2 0 C1-like domain C1_2 PF03107.11 gi|313125648|ref|YP_004035918.1| - 0.65 10.1 3.3 0.54 10.4 0.8 2.0 2 0 0 2 2 2 0 C1 domain Nudix_N_2 PF14803.1 gi|313125648|ref|YP_004035918.1| - 1.5 8.5 4.6 3.1 7.5 1.6 2.7 2 1 0 2 2 2 0 Nudix N-terminal CBS PF00571.23 gi|313125650|ref|YP_004035920.1| - 2e-31 107.5 8.9 4.9e-16 58.2 0.5 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.11 gi|313125650|ref|YP_004035920.1| - 0.19 11.6 4.0 0.46 10.3 0.2 2.5 2 2 0 2 2 2 0 PRC-barrel domain EamA PF00892.15 gi|313125651|ref|YP_004035921.1| - 8.3e-29 100.1 22.3 5.5e-18 65.2 7.3 2.2 2 0 0 2 2 2 2 EamA-like transporter family PSII PF00421.14 gi|313125651|ref|YP_004035921.1| - 0.79 8.2 6.2 0.087 11.3 1.3 1.7 2 0 0 2 2 2 0 Photosystem II protein DUF3955 PF13127.1 gi|313125651|ref|YP_004035921.1| - 0.92 9.0 13.0 16 5.1 0.0 5.4 5 0 0 5 5 5 0 Protein of unknown function (DUF3955) TPT PF03151.11 gi|313125651|ref|YP_004035921.1| - 1.9 8.1 20.3 1.3 8.7 8.2 3.1 2 1 0 2 2 2 0 Triose-phosphate Transporter family 7TMR-DISM_7TM PF07695.6 gi|313125651|ref|YP_004035921.1| - 2.1 7.9 24.0 86 2.7 6.4 3.6 1 1 1 2 2 2 0 7TM diverse intracellular signalling YqzM PF14141.1 gi|313125651|ref|YP_004035921.1| - 4.8 7.0 5.6 19 5.1 0.1 2.8 2 0 0 2 2 2 0 YqzM-like protein OstA PF03968.9 gi|313125652|ref|YP_004035922.1| - 0.057 13.3 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 OstA-like protein DUF1344 PF07076.6 gi|313125652|ref|YP_004035922.1| - 0.076 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) RRP7 PF12923.2 gi|313125652|ref|YP_004035922.1| - 0.099 12.6 0.2 0.14 12.2 0.2 1.3 1 1 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) Cytidylate_kin2 PF13189.1 gi|313125653|ref|YP_004035923.1| - 1.5e-19 70.6 0.0 1.1e-18 67.7 0.0 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|313125653|ref|YP_004035923.1| - 4.5e-17 62.5 0.0 6.5e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313125653|ref|YP_004035923.1| - 9.2e-10 39.3 0.1 1.4e-09 38.8 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313125653|ref|YP_004035923.1| - 2.2e-05 24.6 0.0 3.5e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|313125653|ref|YP_004035923.1| - 7.3e-05 22.6 0.2 0.00019 21.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|313125653|ref|YP_004035923.1| - 9.1e-05 22.4 0.1 0.00018 21.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|313125653|ref|YP_004035923.1| - 0.00024 20.9 0.0 0.00067 19.5 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|313125653|ref|YP_004035923.1| - 0.00065 19.5 0.5 0.0055 16.5 0.3 2.0 1 1 0 1 1 1 1 Shikimate kinase RHH_4 PF13467.1 gi|313125653|ref|YP_004035923.1| - 0.0084 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|313125653|ref|YP_004035923.1| - 0.0087 15.9 1.2 0.021 14.6 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family AAA_19 PF13245.1 gi|313125653|ref|YP_004035923.1| - 0.0089 15.7 0.1 0.016 14.9 0.1 1.6 1 1 0 1 1 1 1 Part of AAA domain Cytidylate_kin PF02224.13 gi|313125653|ref|YP_004035923.1| - 0.011 15.1 0.1 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase CoaE PF01121.15 gi|313125653|ref|YP_004035923.1| - 0.067 12.5 0.0 5.1 6.4 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase NTPase_1 PF03266.10 gi|313125653|ref|YP_004035923.1| - 0.099 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.1 gi|313125653|ref|YP_004035923.1| - 0.1 12.7 0.1 0.22 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain PIG-L PF02585.12 gi|313125653|ref|YP_004035923.1| - 0.1 13.0 0.0 0.14 12.6 0.0 1.5 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase Rad17 PF03215.10 gi|313125653|ref|YP_004035923.1| - 0.14 10.8 0.1 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Asparaginase PF00710.15 gi|313125654|ref|YP_004035924.1| - 3.1e-72 243.1 1.1 3.5e-72 242.9 0.7 1.0 1 0 0 1 1 1 1 Asparaginase Phospholamban PF04272.9 gi|313125655|ref|YP_004035925.1| - 0.12 11.8 1.1 0.18 11.2 0.7 1.2 1 0 0 1 1 1 0 Phospholamban Aldo_ket_red PF00248.16 gi|313125656|ref|YP_004035926.1| - 3.4e-78 262.3 0.0 3.9e-78 262.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF1684 PF07920.6 gi|313125657|ref|YP_004035927.1| - 1.3e-53 180.6 0.0 1.6e-53 180.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) OPT PF03169.10 gi|313125658|ref|YP_004035928.1| - 0.13 10.6 2.6 0.13 10.6 1.8 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF2583 PF10762.4 gi|313125658|ref|YP_004035928.1| - 0.14 12.2 0.5 0.18 11.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) DUF1118 PF06549.7 gi|313125658|ref|YP_004035928.1| - 0.18 11.9 2.5 0.19 11.8 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) IncA PF04156.9 gi|313125658|ref|YP_004035928.1| - 6.8 6.2 7.1 7.9 6.0 4.9 1.1 1 0 0 1 1 1 0 IncA protein DUF1628 PF07790.6 gi|313125659|ref|YP_004035929.1| - 4.5e-24 85.0 5.3 1.1e-23 83.8 1.7 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|313125660|ref|YP_004035930.1| - 2e-24 86.0 3.8 2.6e-23 82.5 2.6 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) SH3_6 PF12913.2 gi|313125661|ref|YP_004035931.1| - 0.08 12.1 0.3 0.43 9.8 0.1 2.2 2 0 0 2 2 2 0 SH3 domain of the SH3b1 type DUF4129 PF13559.1 gi|313125662|ref|YP_004035932.1| - 8.9e-15 54.4 4.2 1.7e-14 53.5 2.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF3328 PF11807.3 gi|313125662|ref|YP_004035932.1| - 0.01 15.5 0.2 0.079 12.6 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3328) COPI_assoc PF08507.5 gi|313125662|ref|YP_004035932.1| - 0.04 13.6 0.0 0.098 12.3 0.0 1.6 2 0 0 2 2 2 0 COPI associated protein ATP1G1_PLM_MAT8 PF02038.11 gi|313125662|ref|YP_004035932.1| - 0.18 10.8 1.1 0.36 9.8 0.8 1.4 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF58 PF01882.13 gi|313125663|ref|YP_004035933.1| - 7.6e-17 61.2 0.0 1.6e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|313125663|ref|YP_004035933.1| - 2.1e-07 30.9 5.8 3.7e-07 30.0 1.2 2.6 2 0 0 2 2 2 1 Domain of unknown function DUF11 CRA PF06589.6 gi|313125664|ref|YP_004035934.1| - 0.099 11.9 1.0 0.2 10.9 0.7 1.6 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) Eno-Rase_NADH_b PF12242.3 gi|313125664|ref|YP_004035934.1| - 0.13 12.1 0.2 0.25 11.1 0.1 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF4395 PF14340.1 gi|313125664|ref|YP_004035934.1| - 7.2 6.6 18.5 0.29 11.1 5.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4395) Atg14 PF10186.4 gi|313125666|ref|YP_004035936.1| - 0.029 13.3 2.0 0.042 12.7 1.4 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2524 PF10732.4 gi|313125666|ref|YP_004035936.1| - 0.13 12.3 3.5 0.3 11.2 2.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2524) SNARE_assoc PF09335.6 gi|313125668|ref|YP_004035938.1| - 1e-11 45.0 8.5 1e-11 45.0 5.9 2.0 3 0 0 3 3 3 1 SNARE associated Golgi protein iPGM_N PF06415.8 gi|313125669|ref|YP_004035939.1| - 8.7e-78 260.6 0.0 1.2e-77 260.2 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|313125669|ref|YP_004035939.1| - 1.4e-76 257.1 0.1 1.6e-76 257.0 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|313125669|ref|YP_004035939.1| - 5.9e-09 35.7 0.1 3.4e-08 33.1 0.1 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|313125669|ref|YP_004035939.1| - 1.4e-06 27.7 0.1 2.2e-05 23.8 0.0 2.7 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.7 gi|313125669|ref|YP_004035939.1| - 0.0017 18.0 0.2 0.0039 16.8 0.1 1.5 1 0 0 1 1 1 1 PglZ domain VWA_2 PF13519.1 gi|313125669|ref|YP_004035939.1| - 0.036 14.1 0.8 0.11 12.5 0.1 2.0 2 0 0 2 2 2 0 von Willebrand factor type A domain DUF1405 PF07187.6 gi|313125670|ref|YP_004035940.1| - 4e-40 137.2 10.4 5.2e-40 136.8 7.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HemY_N PF07219.8 gi|313125670|ref|YP_004035940.1| - 0.056 12.9 2.0 5.4 6.6 0.0 2.9 3 0 0 3 3 3 0 HemY protein N-terminus HTH_5 PF01022.15 gi|313125671|ref|YP_004035941.1| - 9.4e-19 66.8 1.3 5.2e-16 58.0 0.1 2.8 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313125671|ref|YP_004035941.1| - 2e-17 62.7 3.4 6.1e-14 51.5 0.1 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|313125671|ref|YP_004035941.1| - 7.2e-16 57.6 5.0 4.8e-09 35.7 0.1 3.1 3 1 0 3 3 3 2 MarR family HTH_24 PF13412.1 gi|313125671|ref|YP_004035941.1| - 8.3e-14 50.7 0.5 2.2e-09 36.5 0.0 2.9 3 0 0 3 3 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313125671|ref|YP_004035941.1| - 1.5e-13 50.2 0.1 1.3e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313125671|ref|YP_004035941.1| - 1.1e-12 47.4 0.4 1.2e-07 31.2 0.1 2.8 3 0 0 3 3 2 2 MarR family HTH_27 PF13463.1 gi|313125671|ref|YP_004035941.1| - 2.2e-11 43.8 0.5 1.3e-05 25.3 0.0 2.6 3 0 0 3 3 2 2 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|313125671|ref|YP_004035941.1| - 1.8e-09 37.4 0.0 0.0002 21.2 0.0 2.3 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|313125671|ref|YP_004035941.1| - 2.9e-09 36.5 0.4 0.00075 19.2 0.0 2.7 3 1 0 3 3 2 2 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|313125671|ref|YP_004035941.1| - 1.8e-07 31.1 0.0 0.0021 18.1 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|313125671|ref|YP_004035941.1| - 7.5e-07 28.6 0.1 0.015 14.8 0.0 2.7 2 0 0 2 2 2 2 LexA DNA binding domain HTH_11 PF08279.7 gi|313125671|ref|YP_004035941.1| - 2.5e-06 27.0 0.6 1.3e-05 24.6 0.0 2.4 3 0 0 3 3 2 1 HTH domain HTH_28 PF13518.1 gi|313125671|ref|YP_004035941.1| - 7.2e-06 25.8 0.5 0.076 13.0 0.0 2.8 2 0 0 2 2 2 2 Helix-turn-helix domain DUF4423 PF14394.1 gi|313125671|ref|YP_004035941.1| - 1.3e-05 24.7 0.0 0.036 13.6 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) GntR PF00392.16 gi|313125671|ref|YP_004035941.1| - 1.7e-05 24.1 0.1 0.11 11.8 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|313125671|ref|YP_004035941.1| - 1.9e-05 24.1 0.2 0.01 15.4 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_10 PF04967.7 gi|313125671|ref|YP_004035941.1| - 3.2e-05 23.4 0.0 0.0086 15.6 0.0 3.3 3 0 0 3 3 3 1 HTH DNA binding domain HTH_29 PF13551.1 gi|313125671|ref|YP_004035941.1| - 3.3e-05 24.0 0.7 0.16 12.1 0.1 2.4 2 0 0 2 2 2 2 Winged helix-turn helix PadR PF03551.9 gi|313125671|ref|YP_004035941.1| - 3.9e-05 23.3 0.2 0.0032 17.2 0.0 3.3 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|313125671|ref|YP_004035941.1| - 4.4e-05 23.2 0.0 0.071 13.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Sulfolobus_pRN PF05584.6 gi|313125671|ref|YP_004035941.1| - 4.7e-05 23.2 0.0 0.14 12.1 0.0 2.5 3 0 0 3 3 2 2 Sulfolobus plasmid regulatory protein HTH_CodY PF08222.6 gi|313125671|ref|YP_004035941.1| - 0.00012 21.3 0.0 0.00023 20.4 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF2513 PF10711.4 gi|313125671|ref|YP_004035941.1| - 0.00047 20.2 0.0 0.019 15.0 0.0 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_1 PF00126.22 gi|313125671|ref|YP_004035941.1| - 0.00088 18.9 0.5 1.9 8.2 0.2 2.9 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.1 gi|313125671|ref|YP_004035941.1| - 0.00091 18.7 2.8 0.36 10.4 0.0 3.8 3 1 0 3 3 3 1 AsnC-type helix-turn-helix domain HemN_C PF06969.11 gi|313125671|ref|YP_004035941.1| - 0.0011 18.9 0.4 0.53 10.3 0.0 3.1 4 0 0 4 4 3 1 HemN C-terminal domain ArsR PF09824.4 gi|313125671|ref|YP_004035941.1| - 0.0016 17.8 0.0 0.036 13.3 0.0 2.1 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_36 PF13730.1 gi|313125671|ref|YP_004035941.1| - 0.0019 18.3 0.0 0.021 14.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|313125671|ref|YP_004035941.1| - 0.0022 17.8 0.0 0.081 12.7 0.0 2.4 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC FeoC PF09012.5 gi|313125671|ref|YP_004035941.1| - 0.0024 17.5 0.0 2.5 7.8 0.0 2.6 3 0 0 3 3 2 1 FeoC like transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|313125671|ref|YP_004035941.1| - 0.0045 16.1 0.0 1.6 7.9 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 TFIIE_alpha PF02002.12 gi|313125671|ref|YP_004035941.1| - 0.0052 16.2 0.2 0.52 9.8 0.0 2.3 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r4_2 PF08281.7 gi|313125671|ref|YP_004035941.1| - 0.0056 16.1 0.1 1 8.8 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 DDRGK PF09756.4 gi|313125671|ref|YP_004035941.1| - 0.008 15.6 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain RPA_C PF08784.6 gi|313125671|ref|YP_004035941.1| - 0.0094 16.3 0.0 4.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Replication protein A C terminal PaaX PF07848.7 gi|313125671|ref|YP_004035941.1| - 0.01 15.7 0.1 0.48 10.4 0.0 2.4 2 0 0 2 2 2 0 PaaX-like protein DUF2089 PF09862.4 gi|313125671|ref|YP_004035941.1| - 0.012 15.4 0.0 0.067 12.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_DeoR PF08220.7 gi|313125671|ref|YP_004035941.1| - 0.015 14.7 0.3 0.15 11.6 0.0 2.4 3 0 0 3 3 2 0 DeoR-like helix-turn-helix domain HxlR PF01638.12 gi|313125671|ref|YP_004035941.1| - 0.02 14.5 0.0 0.085 12.4 0.0 1.9 2 0 0 2 2 2 0 HxlR-like helix-turn-helix MerR PF00376.18 gi|313125671|ref|YP_004035941.1| - 0.024 14.2 0.4 0.54 9.8 0.1 3.0 2 1 0 2 2 2 0 MerR family regulatory protein HTH_45 PF14947.1 gi|313125671|ref|YP_004035941.1| - 0.024 14.4 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix Penicillinase_R PF03965.11 gi|313125671|ref|YP_004035941.1| - 0.027 14.5 0.0 4.4 7.4 0.0 2.5 3 0 0 3 3 2 0 Penicillinase repressor HTH_34 PF13601.1 gi|313125671|ref|YP_004035941.1| - 0.029 14.3 0.0 0.055 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain IF2_N PF04760.10 gi|313125671|ref|YP_004035941.1| - 0.046 13.3 0.1 1.2 8.9 0.0 2.8 4 0 0 4 4 3 0 Translation initiation factor IF-2, N-terminal region Cdc6_C PF09079.6 gi|313125671|ref|YP_004035941.1| - 0.06 13.0 0.1 0.66 9.7 0.0 2.6 3 0 0 3 3 3 0 CDC6, C terminal GerE PF00196.14 gi|313125671|ref|YP_004035941.1| - 0.088 12.1 0.0 12 5.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family RP-C PF03428.8 gi|313125671|ref|YP_004035941.1| - 0.1 12.0 0.0 3.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Replication protein C N-terminal domain Sigma70_r4 PF04545.11 gi|313125671|ref|YP_004035941.1| - 0.11 11.7 0.5 11 5.4 0.0 3.5 4 1 0 4 4 2 0 Sigma-70, region 4 FaeA PF04703.7 gi|313125671|ref|YP_004035941.1| - 0.15 12.2 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|313125671|ref|YP_004035941.1| - 0.16 11.5 5.3 0.96 9.0 0.0 3.4 4 0 0 4 4 3 0 IclR helix-turn-helix domain Asparaginase PF00710.15 gi|313125673|ref|YP_004035943.1| - 2.6e-88 295.9 0.1 3.2e-88 295.6 0.1 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|313125673|ref|YP_004035943.1| - 0.059 12.7 0.0 0.089 12.1 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Acetyltransf_1 PF00583.19 gi|313125674|ref|YP_004035944.1| - 8.7e-09 35.2 0.0 2.4e-08 33.8 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|313125674|ref|YP_004035944.1| - 4.2e-06 26.9 0.2 3.7e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125674|ref|YP_004035944.1| - 7.1e-05 22.6 0.0 0.00017 21.3 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|313125674|ref|YP_004035944.1| - 0.0052 16.6 0.0 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313125674|ref|YP_004035944.1| - 0.0081 16.2 3.3 0.022 14.8 0.0 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain HATPase_c PF02518.21 gi|313125675|ref|YP_004035945.1| - 3.9e-14 52.3 0.0 6.7e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313125675|ref|YP_004035945.1| - 2e-08 34.2 0.7 5.6e-08 32.7 0.1 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|313125675|ref|YP_004035945.1| - 0.018 14.8 0.1 0.038 13.7 0.1 1.8 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|313125675|ref|YP_004035945.1| - 0.041 13.5 0.0 0.088 12.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313125675|ref|YP_004035945.1| - 0.044 14.1 0.0 0.086 13.2 0.0 1.5 1 0 0 1 1 1 0 PAS domain CPSase_sm_chain PF00988.17 gi|313125676|ref|YP_004035946.1| - 1.4e-38 131.3 0.0 8.7e-38 128.7 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|313125676|ref|YP_004035946.1| - 2.9e-37 128.0 0.0 4.2e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313125676|ref|YP_004035946.1| - 9e-07 28.5 0.5 0.0003 20.3 0.4 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|313125676|ref|YP_004035946.1| - 0.002 17.6 0.0 0.0042 16.5 0.0 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_AsnC-type PF13404.1 gi|313125677|ref|YP_004035947.1| - 2.7e-18 65.2 0.8 6.2e-18 64.0 0.6 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|313125677|ref|YP_004035947.1| - 1.7e-15 56.1 0.1 3.2e-15 55.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|313125677|ref|YP_004035947.1| - 9.3e-11 41.2 1.4 1.7e-10 40.4 1.0 1.4 1 0 0 1 1 1 1 AsnC family Sigma70_r4_2 PF08281.7 gi|313125677|ref|YP_004035947.1| - 1.7e-05 24.1 0.1 7.2e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|313125677|ref|YP_004035947.1| - 0.00018 20.6 0.3 0.00075 18.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.2 gi|313125677|ref|YP_004035947.1| - 0.00031 20.4 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313125677|ref|YP_004035947.1| - 0.00061 19.3 0.1 0.0013 18.3 0.0 1.6 1 1 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|313125677|ref|YP_004035947.1| - 0.00066 19.1 0.3 0.0013 18.1 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|313125677|ref|YP_004035947.1| - 0.0011 18.4 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313125677|ref|YP_004035947.1| - 0.002 17.3 0.1 0.004 16.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.10 gi|313125677|ref|YP_004035947.1| - 0.0039 16.6 0.1 0.018 14.4 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_23 PF13384.1 gi|313125677|ref|YP_004035947.1| - 0.0059 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GYD PF08734.6 gi|313125677|ref|YP_004035947.1| - 0.0059 16.3 0.6 0.026 14.2 0.1 2.1 1 1 1 3 3 3 1 GYD domain MarR_2 PF12802.2 gi|313125677|ref|YP_004035947.1| - 0.0075 15.9 0.2 0.016 14.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.6 gi|313125677|ref|YP_004035947.1| - 0.0078 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain DUF746 PF05344.6 gi|313125677|ref|YP_004035947.1| - 0.008 15.6 0.1 0.076 12.5 0.0 2.3 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) NapD PF03927.8 gi|313125677|ref|YP_004035947.1| - 0.013 15.3 1.0 0.025 14.3 0.7 1.6 1 0 0 1 1 1 0 NapD protein MarR PF01047.17 gi|313125677|ref|YP_004035947.1| - 0.016 14.8 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 MarR family GerE PF00196.14 gi|313125677|ref|YP_004035947.1| - 0.031 13.5 0.2 0.14 11.5 0.0 2.1 2 1 1 3 3 3 0 Bacterial regulatory proteins, luxR family GntR PF00392.16 gi|313125677|ref|YP_004035947.1| - 0.04 13.3 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4191 PF13829.1 gi|313125677|ref|YP_004035947.1| - 0.041 12.9 0.6 0.26 10.3 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) TrmB PF01978.14 gi|313125677|ref|YP_004035947.1| - 0.054 13.2 0.1 0.14 11.8 0.0 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|313125677|ref|YP_004035947.1| - 0.072 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|313125677|ref|YP_004035947.1| - 0.1 12.1 0.2 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain FaeA PF04703.7 gi|313125677|ref|YP_004035947.1| - 0.13 12.4 0.1 0.73 10.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein NUDIX PF00293.23 gi|313125678|ref|YP_004035948.1| - 4.5e-13 49.0 0.6 6.6e-13 48.4 0.4 1.3 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|313125678|ref|YP_004035948.1| - 7.5e-05 22.1 0.4 0.00026 20.4 0.3 1.9 1 1 0 1 1 1 1 NUDIX domain Prok-JAB PF14464.1 gi|313125679|ref|YP_004035949.1| - 5.5e-17 61.2 0.7 1.5e-16 59.8 0.5 1.6 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|313125679|ref|YP_004035949.1| - 3.6e-08 33.1 0.0 7.5e-08 32.1 0.0 1.5 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.1 gi|313125679|ref|YP_004035949.1| - 0.016 15.1 0.1 0.06 13.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4329) adh_short PF00106.20 gi|313125680|ref|YP_004035950.1| - 2.7e-23 82.6 0.5 7.5e-23 81.2 0.4 1.7 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313125680|ref|YP_004035950.1| - 8.6e-09 35.5 0.0 1.3e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313125680|ref|YP_004035950.1| - 0.00014 21.5 0.5 0.0022 17.7 0.3 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313125680|ref|YP_004035950.1| - 0.00033 20.1 0.0 0.0004 19.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313125680|ref|YP_004035950.1| - 0.0053 16.7 0.3 0.0071 16.3 0.2 1.3 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|313125680|ref|YP_004035950.1| - 0.033 13.0 0.1 0.039 12.8 0.1 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain DFP PF04127.10 gi|313125680|ref|YP_004035950.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Aminotran_5 PF00266.14 gi|313125681|ref|YP_004035951.1| - 9.6e-27 93.6 0.0 1.3e-26 93.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|313125681|ref|YP_004035951.1| - 0.0028 15.9 0.0 0.0038 15.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF1651 PF07864.6 gi|313125681|ref|YP_004035951.1| - 0.0094 16.0 0.6 0.093 12.8 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1651) Sipho_tail PF05709.6 gi|313125682|ref|YP_004035952.1| - 0.12 11.4 1.2 0.14 11.2 0.8 1.2 1 0 0 1 1 1 0 Phage tail protein AIRS_C PF02769.17 gi|313125683|ref|YP_004035953.1| - 4.5e-19 68.9 0.6 7.3e-19 68.2 0.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|313125683|ref|YP_004035953.1| - 0.0091 16.2 0.4 0.037 14.2 0.0 2.3 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Abhydrolase_6 PF12697.2 gi|313125684|ref|YP_004035954.1| - 7.9e-36 124.0 8.8 9.9e-36 123.7 6.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313125684|ref|YP_004035954.1| - 2.7e-20 72.9 0.1 9.4e-20 71.1 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313125684|ref|YP_004035954.1| - 2.8e-17 62.8 0.0 7.3e-17 61.4 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|313125684|ref|YP_004035954.1| - 4.9e-06 26.3 0.0 8.5e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|313125684|ref|YP_004035954.1| - 0.0041 15.6 0.0 0.041 12.3 0.0 2.0 1 1 0 1 1 1 1 Ndr family DLH PF01738.13 gi|313125684|ref|YP_004035954.1| - 0.031 13.5 0.0 4.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Dienelactone hydrolase family AA_permease_2 PF13520.1 gi|313125685|ref|YP_004035955.1| - 3e-48 164.4 48.0 3.8e-48 164.1 33.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|313125685|ref|YP_004035955.1| - 2.1e-36 125.3 44.3 2.8e-36 124.9 30.7 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|313125685|ref|YP_004035955.1| - 7.4e-21 74.8 7.4 9.7e-10 38.7 0.1 3.1 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.8 gi|313125685|ref|YP_004035955.1| - 4.7e-10 38.6 18.0 4.7e-10 38.6 12.5 2.2 2 0 0 2 2 2 2 Spore germination protein 2TM PF13239.1 gi|313125685|ref|YP_004035955.1| - 1.5 8.9 0.0 1.5 8.9 0.0 2.7 3 0 0 3 3 3 0 2TM domain Usp PF00582.21 gi|313125686|ref|YP_004035956.1| - 5.2e-11 42.9 0.0 6e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family ADK PF00406.17 gi|313125688|ref|YP_004035958.1| - 7.1e-43 146.0 0.0 8.6e-43 145.8 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|313125688|ref|YP_004035958.1| - 4.5e-18 64.6 2.8 4.5e-18 64.6 2.0 2.0 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|313125688|ref|YP_004035958.1| - 3.5e-10 40.7 0.2 4.9e-10 40.2 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313125688|ref|YP_004035958.1| - 7.7e-09 35.9 0.0 1.3e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313125688|ref|YP_004035958.1| - 1.5e-08 34.6 0.0 3e-08 33.6 0.0 1.4 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|313125688|ref|YP_004035958.1| - 0.0017 18.2 0.5 0.01 15.7 0.2 2.1 2 1 0 2 2 1 1 Shikimate kinase RuvB_N PF05496.7 gi|313125688|ref|YP_004035958.1| - 0.004 16.2 0.0 0.007 15.4 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus A2L_zn_ribbon PF08792.5 gi|313125688|ref|YP_004035958.1| - 0.0078 15.6 1.4 1.3 8.6 0.2 2.4 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|313125688|ref|YP_004035958.1| - 0.01 15.7 2.5 0.14 12.1 0.4 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PAS_7 PF12860.2 gi|313125688|ref|YP_004035958.1| - 0.012 15.5 0.1 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 PAS fold DZR PF12773.2 gi|313125688|ref|YP_004035958.1| - 0.018 14.8 0.3 0.032 14.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon PduV-EutP PF10662.4 gi|313125688|ref|YP_004035958.1| - 0.042 13.3 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|313125688|ref|YP_004035958.1| - 0.058 12.4 0.1 0.078 12.0 0.1 1.4 1 1 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.12 gi|313125688|ref|YP_004035958.1| - 0.071 12.4 0.3 7.3 5.9 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase AAA_5 PF07728.9 gi|313125688|ref|YP_004035958.1| - 0.075 12.7 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HypA PF01155.14 gi|313125688|ref|YP_004035958.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|313125688|ref|YP_004035958.1| - 0.14 11.6 0.4 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Mg_chelatase PF01078.16 gi|313125688|ref|YP_004035958.1| - 0.15 11.2 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Prok-RING_1 PF14446.1 gi|313125688|ref|YP_004035958.1| - 0.25 11.1 6.2 0.41 10.4 0.3 2.4 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|313125688|ref|YP_004035958.1| - 0.46 9.8 3.6 1.2 8.5 2.5 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|313125688|ref|YP_004035958.1| - 1.2 8.8 4.6 13 5.5 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal GAF_2 PF13185.1 gi|313125689|ref|YP_004035959.1| - 2.1e-24 86.6 4.8 3e-15 56.9 0.2 2.6 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|313125689|ref|YP_004035959.1| - 2.2e-17 63.3 1.2 9.3e-10 38.6 0.1 2.9 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.7 gi|313125689|ref|YP_004035959.1| - 1.6e-16 59.6 0.0 3.8e-16 58.4 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.21 gi|313125689|ref|YP_004035959.1| - 6.2e-14 52.3 2.5 7.2e-07 29.4 0.1 2.6 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.19 gi|313125689|ref|YP_004035959.1| - 1.3e-05 25.1 0.0 4.9e-05 23.2 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|313125689|ref|YP_004035959.1| - 0.00037 20.8 0.0 0.0011 19.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain HTH_22 PF13309.1 gi|313125689|ref|YP_004035959.1| - 0.00083 19.0 0.0 0.0028 17.3 0.0 1.9 1 0 0 1 1 1 1 HTH domain PAS_8 PF13188.1 gi|313125689|ref|YP_004035959.1| - 0.0019 17.9 0.0 0.0059 16.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain Sigma70_r4 PF04545.11 gi|313125689|ref|YP_004035959.1| - 0.0074 15.5 0.2 0.042 13.1 0.0 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|313125689|ref|YP_004035959.1| - 0.075 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.2 gi|313125689|ref|YP_004035959.1| - 0.12 12.6 0.0 0.37 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain PAS_4 PF08448.5 gi|313125689|ref|YP_004035959.1| - 0.43 10.6 6.0 4 7.5 0.0 5.1 5 2 0 5 5 5 0 PAS fold DUF1272 PF06906.6 gi|313125690|ref|YP_004035960.1| - 5.6e-05 22.9 0.8 7.1e-05 22.5 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|313125690|ref|YP_004035960.1| - 0.00069 19.5 2.9 0.0017 18.2 2.0 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|313125690|ref|YP_004035960.1| - 0.0013 18.5 0.8 0.0016 18.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313125690|ref|YP_004035960.1| - 0.0063 15.6 1.9 0.01 15.0 1.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-IS66 PF13005.2 gi|313125690|ref|YP_004035960.1| - 0.0093 15.9 1.5 0.037 13.9 0.1 2.0 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-C2HC5 PF06221.8 gi|313125690|ref|YP_004035960.1| - 0.01 15.5 0.3 0.012 15.3 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|313125690|ref|YP_004035960.1| - 0.011 14.9 2.7 1.3 8.3 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-UBR PF02207.15 gi|313125690|ref|YP_004035960.1| - 0.015 14.9 0.2 0.017 14.8 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) OrfB_Zn_ribbon PF07282.6 gi|313125690|ref|YP_004035960.1| - 0.016 14.8 1.3 0.04 13.5 0.9 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|313125690|ref|YP_004035960.1| - 0.017 15.1 3.6 1.2 9.2 0.5 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Prok-RING_1 PF14446.1 gi|313125690|ref|YP_004035960.1| - 0.019 14.7 0.8 0.023 14.3 0.6 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|313125690|ref|YP_004035960.1| - 0.031 13.9 0.5 0.033 13.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|313125690|ref|YP_004035960.1| - 0.039 13.6 2.2 2.1 8.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|313125690|ref|YP_004035960.1| - 0.04 13.9 2.3 0.088 12.8 1.6 1.7 1 1 0 1 1 1 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|313125690|ref|YP_004035960.1| - 0.044 13.2 0.8 0.15 11.6 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|313125690|ref|YP_004035960.1| - 0.047 13.1 2.8 3 7.4 0.3 2.3 2 1 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|313125690|ref|YP_004035960.1| - 0.048 13.4 0.2 3.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|313125690|ref|YP_004035960.1| - 0.07 12.6 4.8 0.78 9.3 3.5 2.1 1 1 2 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|313125690|ref|YP_004035960.1| - 0.083 12.6 0.4 0.12 12.2 0.2 1.2 1 1 0 1 1 1 0 zinc-ribbons YhfH PF14149.1 gi|313125690|ref|YP_004035960.1| - 0.14 12.0 1.1 11 5.9 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein DNA_ligase_ZBD PF03119.11 gi|313125690|ref|YP_004035960.1| - 0.14 11.8 2.1 0.44 10.3 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.6 gi|313125690|ref|YP_004035960.1| - 0.15 11.9 0.2 0.17 11.7 0.2 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.13 gi|313125690|ref|YP_004035960.1| - 0.18 11.4 1.6 8.6 6.0 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|313125690|ref|YP_004035960.1| - 0.49 9.6 4.2 11 5.2 2.9 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-tcix PF14952.1 gi|313125690|ref|YP_004035960.1| - 1.6 8.1 4.8 12 5.3 0.6 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2 PF00096.21 gi|313125690|ref|YP_004035960.1| - 2.1 8.8 4.3 17 5.9 0.1 2.1 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-Mss51 PF13824.1 gi|313125690|ref|YP_004035960.1| - 2.2 8.2 5.0 4.7 7.1 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF106 PF01956.11 gi|313125691|ref|YP_004035961.1| - 4.1e-47 159.8 2.6 5.8e-47 159.3 1.8 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF4199 PF13858.1 gi|313125691|ref|YP_004035961.1| - 0.013 15.4 0.8 0.024 14.5 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DPM3 PF08285.6 gi|313125691|ref|YP_004035961.1| - 0.014 15.2 0.1 0.014 15.2 0.0 1.8 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 60KD_IMP PF02096.15 gi|313125691|ref|YP_004035961.1| - 0.049 13.2 12.9 0.12 12.0 8.5 1.9 1 1 0 1 1 1 0 60Kd inner membrane protein Cytidylate_kin2 PF13189.1 gi|313125692|ref|YP_004035962.1| - 5.9e-16 58.8 0.6 1.5e-14 54.2 0.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|313125692|ref|YP_004035962.1| - 1.5e-14 54.4 0.1 2e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313125692|ref|YP_004035962.1| - 7.3e-13 49.3 1.9 1.1e-12 48.8 1.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313125692|ref|YP_004035962.1| - 9.5e-09 35.2 0.9 2.7e-07 30.5 0.6 2.3 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|313125692|ref|YP_004035962.1| - 1.6e-08 34.5 0.1 3.3e-08 33.5 0.1 1.8 1 1 0 1 1 1 1 Adenylate kinase SKI PF01202.17 gi|313125692|ref|YP_004035962.1| - 0.00024 20.9 2.7 0.0023 17.8 1.9 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|313125692|ref|YP_004035962.1| - 0.0014 18.6 0.3 0.0085 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|313125692|ref|YP_004035962.1| - 0.0019 17.9 0.4 0.0041 16.8 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain AAA PF00004.24 gi|313125692|ref|YP_004035962.1| - 0.0042 17.2 0.0 0.0067 16.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|313125692|ref|YP_004035962.1| - 0.0084 16.1 1.3 0.016 15.1 0.9 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313125692|ref|YP_004035962.1| - 0.011 15.9 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|313125692|ref|YP_004035962.1| - 0.018 13.7 0.0 0.021 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|313125692|ref|YP_004035962.1| - 0.027 14.0 2.3 0.089 12.3 0.2 2.3 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|313125692|ref|YP_004035962.1| - 0.032 13.3 0.3 0.053 12.5 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Thymidylate_kin PF02223.12 gi|313125692|ref|YP_004035962.1| - 0.047 13.0 0.1 7.2 5.9 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|313125692|ref|YP_004035962.1| - 0.048 12.8 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.13 gi|313125692|ref|YP_004035962.1| - 0.051 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|313125692|ref|YP_004035962.1| - 0.052 12.9 0.6 0.098 12.0 0.4 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313125692|ref|YP_004035962.1| - 0.06 12.7 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|313125692|ref|YP_004035962.1| - 0.067 13.3 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|313125692|ref|YP_004035962.1| - 0.073 13.3 0.0 0.098 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter CbiA PF01656.18 gi|313125692|ref|YP_004035962.1| - 0.073 12.4 0.3 0.12 11.7 0.2 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|313125692|ref|YP_004035962.1| - 0.083 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|313125692|ref|YP_004035962.1| - 0.089 12.3 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|313125692|ref|YP_004035962.1| - 0.091 12.4 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|313125692|ref|YP_004035962.1| - 0.11 11.2 0.1 0.16 10.7 0.1 1.2 1 0 0 1 1 1 0 ArgK protein AAA_11 PF13086.1 gi|313125692|ref|YP_004035962.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain TruB_N PF01509.13 gi|313125693|ref|YP_004035963.1| - 1.6e-23 83.5 0.1 1.7e-13 51.0 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|313125693|ref|YP_004035963.1| - 4.6e-09 36.0 0.0 9.4e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|313125693|ref|YP_004035963.1| - 3e-08 33.2 0.3 5.3e-08 32.4 0.2 1.4 1 0 0 1 1 1 1 PUA domain AstE_AspA PF04952.9 gi|313125694|ref|YP_004035964.1| - 3.2e-36 124.7 0.0 4.4e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|313125694|ref|YP_004035964.1| - 1.5e-06 27.9 0.0 3.1e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 Zinc carboxypeptidase DUF2817 PF10994.3 gi|313125694|ref|YP_004035964.1| - 0.035 13.1 0.0 0.055 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2817) Methyltransf_12 PF08242.7 gi|313125695|ref|YP_004035965.1| - 8.2e-07 29.4 0.2 2.7e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125695|ref|YP_004035965.1| - 1.2e-05 25.0 0.2 2.7e-05 23.9 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313125695|ref|YP_004035965.1| - 2.3e-05 24.0 0.0 3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313125695|ref|YP_004035965.1| - 3e-05 24.3 0.0 6.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125695|ref|YP_004035965.1| - 0.00033 20.9 0.0 0.00072 19.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|313125695|ref|YP_004035965.1| - 0.0026 16.8 0.0 0.004 16.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Pox_MCEL PF03291.11 gi|313125695|ref|YP_004035965.1| - 0.0039 16.1 0.0 0.0068 15.3 0.0 1.3 1 0 0 1 1 1 1 mRNA capping enzyme NodS PF05401.6 gi|313125695|ref|YP_004035965.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_18 PF12847.2 gi|313125695|ref|YP_004035965.1| - 0.039 14.5 0.0 0.076 13.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF309 PF03745.9 gi|313125695|ref|YP_004035965.1| - 0.1 12.0 0.8 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF309) MTS PF05175.9 gi|313125695|ref|YP_004035965.1| - 0.11 11.8 0.0 0.3 10.4 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain AdoMet_MTase PF07757.8 gi|313125695|ref|YP_004035965.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Virul_fac_BrkB PF03631.10 gi|313125696|ref|YP_004035966.1| - 0.015 14.7 5.7 0.018 14.4 4.0 1.0 1 0 0 1 1 1 0 Virulence factor BrkB Peptidase_M10 PF00413.19 gi|313125697|ref|YP_004035967.1| - 2.4e-11 43.6 0.0 1.6e-07 31.2 0.0 2.3 2 0 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.1 gi|313125697|ref|YP_004035967.1| - 0.0002 21.8 0.4 0.00058 20.3 0.1 1.9 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|313125697|ref|YP_004035967.1| - 0.0064 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M43 PF05572.8 gi|313125697|ref|YP_004035967.1| - 0.022 14.3 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M54 PF07998.6 gi|313125697|ref|YP_004035967.1| - 0.15 11.8 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M54 MLTD_N PF06474.7 gi|313125697|ref|YP_004035967.1| - 0.25 11.5 2.2 0.5 10.6 1.5 1.6 1 0 0 1 1 1 0 MltD lipid attachment motif LPAM_1 PF08139.7 gi|313125697|ref|YP_004035967.1| - 0.42 10.9 1.8 0.87 9.9 1.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site ILVD_EDD PF00920.16 gi|313125698|ref|YP_004035968.1| - 8.9e-214 710.7 0.9 1e-213 710.5 0.6 1.0 1 0 0 1 1 1 1 Dehydratase family MoCF_biosynth PF00994.19 gi|313125699|ref|YP_004035969.1| - 4.5e-29 100.6 0.7 5.7e-29 100.3 0.5 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain MreC PF04085.9 gi|313125699|ref|YP_004035969.1| - 0.04 13.3 0.8 0.061 12.7 0.5 1.3 1 0 0 1 1 1 0 rod shape-determining protein MreC Zip PF02535.17 gi|313125699|ref|YP_004035969.1| - 8.9 5.2 13.9 12 4.8 9.6 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter TrmB PF01978.14 gi|313125700|ref|YP_004035970.1| - 0.0011 18.6 0.2 0.0022 17.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|313125700|ref|YP_004035970.1| - 0.0021 18.3 0.4 0.0042 17.3 0.3 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|313125700|ref|YP_004035970.1| - 0.0036 17.0 0.6 0.011 15.5 0.4 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.8 gi|313125700|ref|YP_004035970.1| - 0.0064 15.9 0.1 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain GntR PF00392.16 gi|313125700|ref|YP_004035970.1| - 0.007 15.7 0.4 0.015 14.6 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|313125700|ref|YP_004035970.1| - 0.0073 16.0 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|313125700|ref|YP_004035970.1| - 0.018 14.7 0.2 0.086 12.5 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313125700|ref|YP_004035970.1| - 0.043 13.4 1.3 0.096 12.3 0.9 1.6 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|313125700|ref|YP_004035970.1| - 0.098 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF1803 PF08820.5 gi|313125700|ref|YP_004035970.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) ADH_zinc_N PF00107.21 gi|313125701|ref|YP_004035971.1| - 8.6e-41 138.5 0.3 2.5e-40 137.0 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313125701|ref|YP_004035971.1| - 4.1e-22 77.9 0.0 9e-22 76.9 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|313125701|ref|YP_004035971.1| - 2.7e-20 73.5 0.0 6.2e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|313125701|ref|YP_004035971.1| - 1.9e-05 24.7 0.1 2.8e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|313125701|ref|YP_004035971.1| - 0.00032 20.3 0.1 0.00063 19.3 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DapB_N PF01113.15 gi|313125701|ref|YP_004035971.1| - 0.001 18.9 0.2 0.0024 17.7 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.3 gi|313125701|ref|YP_004035971.1| - 0.0033 17.1 0.2 0.0071 16.1 0.2 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Semialdhyde_dh PF01118.19 gi|313125701|ref|YP_004035971.1| - 0.0054 17.0 0.2 0.01 16.1 0.2 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|313125701|ref|YP_004035971.1| - 0.016 15.1 0.4 0.059 13.2 0.4 1.9 2 0 0 2 2 2 0 short chain dehydrogenase ACP_syn_III_C PF08541.5 gi|313125701|ref|YP_004035971.1| - 0.27 11.2 1.9 1 9.4 0.2 2.5 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Presenilin PF01080.12 gi|313125702|ref|YP_004035972.1| - 0.093 11.5 0.5 0.12 11.1 0.3 1.0 1 0 0 1 1 1 0 Presenilin eRF1_2 PF03464.10 gi|313125704|ref|YP_004035974.1| - 1.4e-05 25.3 0.0 3.6e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 Fmp27_WPPW PF10359.4 gi|313125704|ref|YP_004035974.1| - 0.033 12.6 2.8 0.05 12.0 2.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.10 gi|313125704|ref|YP_004035974.1| - 0.059 12.8 8.6 0.063 12.7 0.4 2.4 1 1 1 2 2 2 0 Septum formation initiator Laminin_I PF06008.9 gi|313125704|ref|YP_004035974.1| - 0.076 12.3 4.5 0.064 12.5 0.9 1.9 2 0 0 2 2 2 0 Laminin Domain I Mnd1 PF03962.10 gi|313125704|ref|YP_004035974.1| - 0.087 12.4 5.1 0.19 11.4 3.6 1.5 1 0 0 1 1 1 0 Mnd1 family IncA PF04156.9 gi|313125704|ref|YP_004035974.1| - 0.15 11.6 7.1 0.26 10.8 4.9 1.3 1 0 0 1 1 1 0 IncA protein DUF2203 PF09969.4 gi|313125704|ref|YP_004035974.1| - 0.4 10.9 4.1 3.2 7.9 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) TSC22 PF01166.13 gi|313125704|ref|YP_004035974.1| - 0.44 10.5 6.7 1.4 8.9 0.2 2.6 2 0 0 2 2 2 0 TSC-22/dip/bun family Ax_dynein_light PF10211.4 gi|313125704|ref|YP_004035974.1| - 0.53 10.0 8.5 0.16 11.7 3.6 1.8 2 0 0 2 2 2 0 Axonemal dynein light chain Mei5 PF10376.4 gi|313125704|ref|YP_004035974.1| - 0.89 9.0 8.0 1.4 8.3 5.5 1.2 1 0 0 1 1 1 0 Double-strand recombination repair protein She9_MDM33 PF05546.6 gi|313125704|ref|YP_004035974.1| - 1.1 8.7 7.2 0.55 9.7 3.1 1.7 2 0 0 2 2 2 0 She9 / Mdm33 family Cep57_CLD_2 PF14197.1 gi|313125704|ref|YP_004035974.1| - 1.3 9.0 14.9 23 5.0 8.2 3.1 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 DUF2514 PF10721.4 gi|313125704|ref|YP_004035974.1| - 1.3 8.6 17.3 1 9.0 6.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2514) FadA PF09403.5 gi|313125704|ref|YP_004035974.1| - 2 8.4 7.6 0.41 10.6 2.4 1.9 2 0 0 2 2 2 0 Adhesion protein FadA APG6 PF04111.7 gi|313125704|ref|YP_004035974.1| - 2.3 7.1 5.6 4.2 6.3 3.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4200 PF13863.1 gi|313125704|ref|YP_004035974.1| - 3.3 7.6 13.0 0.22 11.4 5.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF4140 PF13600.1 gi|313125704|ref|YP_004035974.1| - 3.6 8.0 16.4 1.4 9.4 1.5 3.3 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF4337 PF14235.1 gi|313125704|ref|YP_004035974.1| - 5.3 6.8 5.6 10 5.9 3.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF1611 PF07755.6 gi|313125705|ref|YP_004035975.1| - 3.8e-111 370.5 0.0 4.5e-111 370.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) AAA_26 PF13500.1 gi|313125705|ref|YP_004035975.1| - 0.0033 17.0 0.1 0.24 10.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain GFO_IDH_MocA PF01408.17 gi|313125705|ref|YP_004035975.1| - 0.076 13.5 0.0 0.24 11.9 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold MR_MLE_C PF13378.1 gi|313125706|ref|YP_004035976.1| - 2.4e-22 78.9 0.1 1e-19 70.5 0.1 2.5 2 0 0 2 2 2 2 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|313125706|ref|YP_004035976.1| - 1.9e-16 60.3 0.6 4.9e-16 59.0 0.4 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|313125706|ref|YP_004035976.1| - 6.1e-12 45.5 0.1 1e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|313125706|ref|YP_004035976.1| - 0.0059 15.5 0.0 0.012 14.5 0.0 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.17 gi|313125706|ref|YP_004035976.1| - 0.071 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain PspA_IM30 PF04012.7 gi|313125708|ref|YP_004035978.1| - 1.1e-30 106.7 32.3 1.1e-30 106.7 22.4 2.0 1 1 1 2 2 2 1 PspA/IM30 family Prominin PF05478.6 gi|313125708|ref|YP_004035978.1| - 0.074 10.5 11.2 0.14 9.7 7.8 1.4 1 0 0 1 1 1 0 Prominin MamL-1 PF09596.5 gi|313125708|ref|YP_004035978.1| - 0.12 12.1 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 0 MamL-1 domain SPAM PF02090.10 gi|313125708|ref|YP_004035978.1| - 0.3 11.0 15.8 0.23 11.4 4.6 2.9 1 1 2 3 3 3 0 Salmonella surface presentation of antigen gene type M protein APG6 PF04111.7 gi|313125708|ref|YP_004035978.1| - 0.34 9.9 45.5 0.23 10.4 17.1 3.0 1 1 1 2 2 2 0 Autophagy protein Apg6 DUF972 PF06156.8 gi|313125708|ref|YP_004035978.1| - 0.58 10.5 32.2 0.95 9.8 5.2 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Baculo_PEP_C PF04513.7 gi|313125708|ref|YP_004035978.1| - 0.59 9.9 15.4 0.37 10.6 4.2 3.3 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.16 gi|313125708|ref|YP_004035978.1| - 1.2 8.5 44.2 2.1 7.7 19.5 2.5 1 1 1 2 2 2 0 Intermediate filament protein IncA PF04156.9 gi|313125708|ref|YP_004035978.1| - 1.5 8.4 38.9 2.1 7.9 3.9 3.1 1 1 2 3 3 3 0 IncA protein WXG100 PF06013.7 gi|313125708|ref|YP_004035978.1| - 2.6 8.1 20.5 3.5 7.7 1.9 4.4 2 1 2 4 4 4 0 Proteins of 100 residues with WXG DUF3810 PF12725.2 gi|313125708|ref|YP_004035978.1| - 2.9 6.7 11.0 0.2 10.5 1.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) ERM PF00769.14 gi|313125708|ref|YP_004035978.1| - 3.3 7.1 47.6 42 3.5 33.0 2.0 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Snf7 PF03357.16 gi|313125708|ref|YP_004035978.1| - 3.3 7.0 56.5 1.8e+02 1.4 26.1 3.9 1 1 1 2 2 2 0 Snf7 YlqD PF11068.3 gi|313125708|ref|YP_004035978.1| - 3.3 7.7 32.5 2.7 8.0 11.0 3.3 1 1 2 3 3 3 0 YlqD protein ATG_C PF09333.6 gi|313125708|ref|YP_004035978.1| - 4.7 7.4 8.5 47 4.2 3.2 3.1 1 1 1 2 2 2 0 ATG C terminal domain Laminin_I PF06008.9 gi|313125708|ref|YP_004035978.1| - 6.8 5.9 36.2 2.1 7.6 20.5 3.3 1 1 1 2 2 2 0 Laminin Domain I DUF4200 PF13863.1 gi|313125708|ref|YP_004035978.1| - 7.7 6.4 45.3 0.37 10.7 3.2 4.7 1 1 2 4 4 4 0 Domain of unknown function (DUF4200) CENP-F_leu_zip PF10473.4 gi|313125708|ref|YP_004035978.1| - 8.6 6.2 47.4 1 9.1 16.1 4.2 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|313125708|ref|YP_004035978.1| - 9.8 3.3 42.7 0.13 9.5 19.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Abhydrolase_5 PF12695.2 gi|313125709|ref|YP_004035979.1| - 2.8e-16 59.5 0.5 4.1e-16 59.0 0.4 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|313125709|ref|YP_004035979.1| - 1.2e-08 35.1 7.1 0.00088 19.2 1.5 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|313125709|ref|YP_004035979.1| - 1.6e-08 34.0 0.2 2.1e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|313125709|ref|YP_004035979.1| - 5.5e-05 22.7 0.1 7.4e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.11 gi|313125709|ref|YP_004035979.1| - 0.00017 21.1 0.0 0.00024 20.6 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Lipase_3 PF01764.20 gi|313125709|ref|YP_004035979.1| - 0.002 17.7 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) VirJ PF06057.6 gi|313125709|ref|YP_004035979.1| - 0.0032 17.2 0.2 0.37 10.5 0.0 2.2 1 1 1 2 2 2 1 Bacterial virulence protein (VirJ) FSH1 PF03959.8 gi|313125709|ref|YP_004035979.1| - 0.0038 16.6 0.1 0.019 14.4 0.1 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) DUF1100 PF06500.6 gi|313125709|ref|YP_004035979.1| - 0.0072 14.9 0.0 0.009 14.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) BAAT_C PF08840.6 gi|313125709|ref|YP_004035979.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.16 gi|313125709|ref|YP_004035979.1| - 0.017 14.3 0.5 0.048 12.8 0.2 1.7 1 1 1 2 2 2 0 Prolyl oligopeptidase family DUF2048 PF09752.4 gi|313125709|ref|YP_004035979.1| - 0.019 13.8 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Abhydrolase_3 PF07859.8 gi|313125709|ref|YP_004035979.1| - 0.026 14.1 1.1 0.045 13.3 0.7 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|313125709|ref|YP_004035979.1| - 0.026 14.2 0.1 0.28 10.8 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0227) Esterase PF00756.15 gi|313125709|ref|YP_004035979.1| - 0.047 13.1 0.2 0.069 12.5 0.1 1.4 1 1 0 1 1 1 0 Putative esterase Abhydrolase_1 PF00561.15 gi|313125709|ref|YP_004035979.1| - 0.07 12.6 0.7 0.39 10.2 0.4 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|313125709|ref|YP_004035979.1| - 0.32 11.1 2.8 6.4 6.9 1.1 2.2 1 1 1 2 2 2 0 Thioesterase domain Polysacc_synt_C PF14667.1 gi|313125710|ref|YP_004035980.1| - 0.045 13.5 9.6 0.09 12.5 6.6 1.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain DUF3943 PF13084.1 gi|313125710|ref|YP_004035980.1| - 0.053 13.0 0.5 0.087 12.3 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3943) FixQ PF05545.6 gi|313125710|ref|YP_004035980.1| - 0.37 10.4 0.0 0.37 10.4 0.0 3.2 2 1 1 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ ABC2_membrane_4 PF12730.2 gi|313125710|ref|YP_004035980.1| - 7.3 5.6 9.5 11 5.1 0.5 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF1212 PF06738.7 gi|313125710|ref|YP_004035980.1| - 8 5.8 8.7 4.9 6.5 2.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) DUF3943 PF13084.1 gi|313125711|ref|YP_004035981.1| - 0.031 13.8 0.4 0.041 13.4 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) DUF3767 PF12597.3 gi|313125711|ref|YP_004035981.1| - 0.91 9.1 3.4 2.5 7.7 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3767) TFIIS_C PF01096.13 gi|313125712|ref|YP_004035982.1| - 4.7e-17 61.3 2.7 4.7e-17 61.3 1.9 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|313125712|ref|YP_004035982.1| - 6.7e-09 35.2 2.7 6.7e-09 35.2 1.9 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|313125712|ref|YP_004035982.1| - 7.2e-06 25.7 11.8 0.00011 21.9 1.3 2.7 2 1 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|313125712|ref|YP_004035982.1| - 3.5e-05 23.3 10.6 0.011 15.3 1.1 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|313125712|ref|YP_004035982.1| - 4e-05 22.6 11.5 0.00075 18.6 0.2 3.6 4 0 0 4 4 3 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|313125712|ref|YP_004035982.1| - 0.00068 18.9 13.9 0.093 12.0 1.3 4.1 3 1 0 3 3 3 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|313125712|ref|YP_004035982.1| - 0.00068 19.0 15.8 0.038 13.4 1.7 4.1 3 1 0 3 3 3 1 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|313125712|ref|YP_004035982.1| - 0.0021 17.7 2.5 0.0021 17.7 1.7 2.8 3 0 0 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.2 gi|313125712|ref|YP_004035982.1| - 0.0033 17.2 1.1 0.0033 17.2 0.7 2.9 2 1 1 3 3 3 1 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313125712|ref|YP_004035982.1| - 0.0075 15.9 1.6 0.0075 15.9 1.1 3.0 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|313125712|ref|YP_004035982.1| - 0.012 15.2 9.6 0.64 9.7 0.4 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-trcl PF13451.1 gi|313125712|ref|YP_004035982.1| - 0.024 14.2 12.0 0.68 9.6 0.1 4.1 4 0 0 4 4 4 0 Probable zinc-binding domain zf-C2HC5 PF06221.8 gi|313125712|ref|YP_004035982.1| - 0.063 13.0 0.8 0.063 13.0 0.5 2.7 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type Nudix_N_2 PF14803.1 gi|313125712|ref|YP_004035982.1| - 0.12 12.0 10.6 4.4 7.0 0.1 4.0 4 0 0 4 4 4 0 Nudix N-terminal Cytochrome_C554 PF13435.1 gi|313125712|ref|YP_004035982.1| - 0.14 12.2 5.2 0.063 13.3 2.0 1.6 1 1 0 1 1 1 0 Cytochrome c554 and c-prime zinc_ribbon_5 PF13719.1 gi|313125712|ref|YP_004035982.1| - 0.15 11.6 11.7 1.4 8.5 0.4 3.7 4 0 0 4 4 4 0 zinc-ribbon domain RRN7 PF11781.3 gi|313125712|ref|YP_004035982.1| - 0.21 11.0 14.2 0.98 8.9 0.1 4.1 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_4 PF13717.1 gi|313125712|ref|YP_004035982.1| - 0.23 11.1 12.2 1.9 8.2 0.6 3.6 4 0 0 4 4 4 0 zinc-ribbon domain IBR PF01485.16 gi|313125712|ref|YP_004035982.1| - 0.3 10.9 11.2 20 5.1 2.0 3.4 2 1 1 3 3 3 0 IBR domain ADK_lid PF05191.9 gi|313125712|ref|YP_004035982.1| - 0.34 10.6 10.8 29 4.4 0.1 4.2 4 0 0 4 4 4 0 Adenylate kinase, active site lid DNA_RNApol_7kD PF03604.8 gi|313125712|ref|YP_004035982.1| - 0.4 10.1 14.4 5.5 6.5 0.4 3.6 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Cytochrom_CIII PF02085.11 gi|313125712|ref|YP_004035982.1| - 0.47 10.5 6.4 3.4 7.8 0.2 2.4 1 1 1 2 2 2 0 Class III cytochrome C family A2L_zn_ribbon PF08792.5 gi|313125712|ref|YP_004035982.1| - 0.47 9.9 18.7 1.2 8.7 3.6 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-SNAP50_C PF12251.3 gi|313125712|ref|YP_004035982.1| - 0.61 9.4 3.6 2.3 7.5 0.0 2.1 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal DUF2318 PF10080.4 gi|313125712|ref|YP_004035982.1| - 0.62 9.8 10.8 0.44 10.3 2.1 2.8 1 1 0 2 2 2 0 Predicted membrane protein (DUF2318) zf-C3HC4_3 PF13920.1 gi|313125712|ref|YP_004035982.1| - 1.1 9.0 6.5 6.6 6.4 1.0 3.1 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS91 PF14319.1 gi|313125712|ref|YP_004035982.1| - 1.7 8.1 6.8 14 5.1 0.8 2.9 3 0 0 3 3 3 0 Transposase zinc-binding domain zinc-ribbons_6 PF07191.7 gi|313125712|ref|YP_004035982.1| - 2.4 8.0 9.8 0.3 10.9 1.1 2.6 2 1 0 2 2 2 0 zinc-ribbons GFA PF04828.9 gi|313125712|ref|YP_004035982.1| - 2.7 8.0 13.0 11 6.0 1.1 3.6 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Sgf11 PF08209.6 gi|313125712|ref|YP_004035982.1| - 2.9 7.2 14.7 0.27 10.5 0.7 3.5 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.1 gi|313125712|ref|YP_004035982.1| - 3 8.1 15.6 4.9 7.5 0.4 3.3 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|313125712|ref|YP_004035982.1| - 3.3 7.6 10.5 25 4.8 0.1 3.2 3 0 0 3 3 3 0 AN1-like Zinc finger Prim_Zn_Ribbon PF08273.7 gi|313125712|ref|YP_004035982.1| - 3.7 7.7 12.4 5.6 7.1 2.7 3.5 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase Trm112p PF03966.11 gi|313125712|ref|YP_004035982.1| - 4.3 7.7 6.1 8.6 6.8 0.2 3.0 3 1 0 3 3 3 0 Trm112p-like protein Zn-ribbon_8 PF09723.5 gi|313125712|ref|YP_004035982.1| - 5.3 7.0 17.2 23 5.0 0.4 3.8 2 2 0 2 2 2 0 Zinc ribbon domain Baculo_ME53 PF06061.6 gi|313125712|ref|YP_004035982.1| - 7.3 5.4 6.9 0.81 8.6 0.6 2.1 1 1 0 2 2 2 0 Baculoviridae ME53 Ima1_N PF09779.4 gi|313125712|ref|YP_004035982.1| - 7.6 7.0 9.2 41 4.6 2.8 2.7 1 1 0 2 2 2 0 Ima1 N-terminal domain ImmE5 PF11480.3 gi|313125713|ref|YP_004035983.1| - 0.15 11.9 0.5 0.47 10.2 0.0 2.1 2 0 0 2 2 2 0 Colicin-E5 Imm protein RHH_1 PF01402.16 gi|313125714|ref|YP_004035984.1| - 0.00012 21.7 0.7 0.00012 21.7 0.5 2.9 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family Chlamy_scaf PF09675.5 gi|313125714|ref|YP_004035984.1| - 0.0015 18.4 0.1 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 Chlamydia-phage Chp2 scaffold (Chlamy_scaf) Not3 PF04065.10 gi|313125714|ref|YP_004035984.1| - 0.024 13.9 0.1 0.024 13.9 0.1 1.9 3 0 0 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component DUF948 PF06103.6 gi|313125714|ref|YP_004035984.1| - 0.1 12.4 1.5 0.73 9.7 0.2 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|313125714|ref|YP_004035984.1| - 0.11 12.2 1.0 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|313125714|ref|YP_004035984.1| - 0.12 10.8 2.5 0.17 10.3 1.7 1.2 1 0 0 1 1 1 0 AAA domain NPV_P10 PF05531.7 gi|313125714|ref|YP_004035984.1| - 0.14 12.4 2.3 2.1 8.6 0.1 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Mt_ATP-synt_B PF05405.9 gi|313125714|ref|YP_004035984.1| - 0.16 11.3 2.8 0.14 11.6 0.9 1.7 2 0 0 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) zf-RING_3 PF14369.1 gi|313125714|ref|YP_004035984.1| - 0.44 10.5 2.8 0.92 9.5 1.9 1.5 1 0 0 1 1 1 0 zinc-finger PspB PF06667.7 gi|313125714|ref|YP_004035984.1| - 1.6 8.7 3.4 3.6 7.6 0.1 2.8 2 1 1 3 3 3 0 Phage shock protein B FUSC PF04632.7 gi|313125714|ref|YP_004035984.1| - 2.7 6.2 5.3 3.8 5.8 3.7 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family KaiC PF06745.8 gi|313125715|ref|YP_004035985.1| - 5.3e-09 35.5 0.0 0.0009 18.4 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|313125715|ref|YP_004035985.1| - 4.8e-07 29.3 0.7 3.1e-06 26.7 0.5 2.0 1 1 0 1 1 1 1 AAA domain GHMP_kinases_N PF00288.21 gi|313125716|ref|YP_004035986.1| - 1.8e-08 34.2 1.7 2.4e-08 33.8 0.3 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|313125716|ref|YP_004035986.1| - 0.00016 21.7 0.2 0.00034 20.7 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal TrkA_N PF02254.13 gi|313125717|ref|YP_004035987.1| - 0.0077 16.2 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain GMP_synt_C PF00958.17 gi|313125718|ref|YP_004035988.1| - 6e-29 99.6 0.0 3.6e-28 97.1 0.0 2.1 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|313125718|ref|YP_004035988.1| - 2.7e-08 32.9 0.0 4.8e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.16 gi|313125718|ref|YP_004035988.1| - 1.6e-06 27.8 0.3 3.9e-05 23.2 0.0 2.4 2 1 0 3 3 3 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|313125718|ref|YP_004035988.1| - 1.1e-05 24.1 0.0 0.00099 17.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|313125718|ref|YP_004035988.1| - 0.018 14.3 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|313125718|ref|YP_004035988.1| - 0.02 14.3 0.0 0.08 12.3 0.0 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|313125718|ref|YP_004035988.1| - 0.055 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family CTP_synth_N PF06418.9 gi|313125719|ref|YP_004035989.1| - 4.3e-127 422.9 0.1 6.7e-127 422.2 0.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|313125719|ref|YP_004035989.1| - 1.5e-48 164.8 0.0 3.2e-48 163.7 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313125719|ref|YP_004035989.1| - 1.4e-08 34.4 0.0 5.6e-08 32.4 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|313125719|ref|YP_004035989.1| - 1.9e-08 33.9 0.1 3.1e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NMT1_2 PF13379.1 gi|313125719|ref|YP_004035989.1| - 0.092 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family Saccharop_dh PF03435.13 gi|313125720|ref|YP_004035990.1| - 5.8e-20 71.6 0.0 1e-19 70.8 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|313125720|ref|YP_004035990.1| - 1.1e-10 41.7 0.0 2.3e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding SDA1 PF05285.7 gi|313125720|ref|YP_004035990.1| - 0.0034 16.7 16.0 0.0045 16.3 11.1 1.1 1 0 0 1 1 1 1 SDA1 Shikimate_DH PF01488.15 gi|313125720|ref|YP_004035990.1| - 0.0072 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Aldo_ket_red PF00248.16 gi|313125721|ref|YP_004035991.1| - 7.2e-58 195.6 0.0 8.2e-58 195.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PEPcase PF00311.12 gi|313125723|ref|YP_004035993.1| - 7.9e-243 807.8 0.0 9.9e-243 807.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|313125723|ref|YP_004035993.1| - 0.00051 18.4 0.0 0.00082 17.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase EGL-1 PF11430.3 gi|313125723|ref|YP_004035993.1| - 0.028 14.0 0.4 0.058 13.0 0.3 1.4 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 Rieske PF00355.21 gi|313125725|ref|YP_004035995.1| - 5.4e-07 29.1 0.1 9.5e-07 28.3 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Aldedh PF00171.17 gi|313125726|ref|YP_004035996.1| - 6.3e-141 469.8 0.1 7.6e-141 469.5 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|313125726|ref|YP_004035996.1| - 2.4e-06 26.5 0.0 3.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) ThiS PF02597.15 gi|313125727|ref|YP_004035997.1| - 9.5e-16 57.9 0.1 1.1e-15 57.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family STN PF07660.9 gi|313125727|ref|YP_004035997.1| - 0.0067 15.9 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain Ub-Mut7C PF14451.1 gi|313125727|ref|YP_004035997.1| - 0.0072 15.8 0.1 2.2 7.8 0.0 2.2 2 0 0 2 2 2 2 Mut7-C ubiquitin CBS PF00571.23 gi|313125727|ref|YP_004035997.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 CBS domain Condensation PF00668.15 gi|313125727|ref|YP_004035997.1| - 0.11 11.2 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Condensation domain TrkA_C PF02080.16 gi|313125728|ref|YP_004035998.1| - 1.7e-07 30.6 2.9 1.8e-07 30.6 0.3 2.4 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.16 gi|313125729|ref|YP_004035999.1| - 1.9e-13 49.8 0.6 6.8e-13 48.0 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain TrkA_N PF02254.13 gi|313125730|ref|YP_004036000.1| - 4.9e-27 94.2 0.4 7.9e-27 93.5 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|313125730|ref|YP_004036000.1| - 9.5e-14 50.8 2.8 3.8e-13 48.9 2.0 2.1 1 0 0 1 1 1 1 Ion channel NAD_binding_7 PF13241.1 gi|313125730|ref|YP_004036000.1| - 0.0012 19.0 0.1 0.0049 17.1 0.1 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding Ion_trans PF00520.26 gi|313125730|ref|YP_004036000.1| - 0.028 13.6 2.2 0.063 12.5 1.5 1.7 1 1 0 1 1 1 0 Ion transport protein Saccharop_dh PF03435.13 gi|313125730|ref|YP_004036000.1| - 0.061 12.2 0.1 0.09 11.7 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase IRK PF01007.15 gi|313125730|ref|YP_004036000.1| - 0.063 12.0 0.1 0.098 11.4 0.0 1.2 1 0 0 1 1 1 0 Inward rectifier potassium channel SLS PF14611.1 gi|313125730|ref|YP_004036000.1| - 0.068 12.5 0.1 0.18 11.2 0.0 1.6 1 1 1 2 2 2 0 Mitochondrial inner-membrane-bound regulator NmrA PF05368.8 gi|313125730|ref|YP_004036000.1| - 0.15 11.2 0.5 0.3 10.3 0.1 1.7 2 1 0 2 2 2 0 NmrA-like family Usp PF00582.21 gi|313125731|ref|YP_004036001.1| - 7.4e-10 39.1 0.8 0.00085 19.5 0.1 3.7 2 2 0 2 2 2 2 Universal stress protein family HPP PF04982.8 gi|313125731|ref|YP_004036001.1| - 7.8e-05 22.4 2.5 0.00014 21.6 1.7 1.4 1 0 0 1 1 1 1 HPP family MaoC_dehydrat_N PF13452.1 gi|313125731|ref|YP_004036001.1| - 0.036 13.8 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 N-terminal half of MaoC dehydratase ABC2_membrane_2 PF12679.2 gi|313125731|ref|YP_004036001.1| - 0.056 12.2 1.9 1.5 7.6 0.2 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein PNP_UDP_1 PF01048.15 gi|313125732|ref|YP_004036002.1| - 3.3e-45 153.8 1.5 4.1e-45 153.5 1.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily TFIIE_alpha PF02002.12 gi|313125734|ref|YP_004036004.1| - 0.023 14.1 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF433 PF04255.9 gi|313125734|ref|YP_004036004.1| - 0.027 13.8 0.0 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF433) TrmB PF01978.14 gi|313125734|ref|YP_004036004.1| - 0.052 13.2 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|313125734|ref|YP_004036004.1| - 0.068 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2250 PF10007.4 gi|313125734|ref|YP_004036004.1| - 0.08 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) SgrR_N PF12793.2 gi|313125734|ref|YP_004036004.1| - 0.084 12.8 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term ThiW PF09512.5 gi|313125735|ref|YP_004036005.1| - 0.0035 17.1 2.7 0.0035 17.1 1.9 2.1 2 1 0 2 2 2 1 Thiamine-precursor transporter protein (ThiW) FA_desaturase PF00487.19 gi|313125735|ref|YP_004036005.1| - 0.085 12.2 4.6 0.096 12.1 2.2 1.7 1 1 1 2 2 2 0 Fatty acid desaturase EI24 PF07264.6 gi|313125735|ref|YP_004036005.1| - 1.2 8.5 10.9 2.8 7.3 7.6 1.6 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) PfkB PF00294.19 gi|313125736|ref|YP_004036006.1| - 4.7e-53 180.2 0.5 7.2e-53 179.6 0.3 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase YndJ PF14158.1 gi|313125737|ref|YP_004036007.1| - 0.046 12.7 0.9 0.051 12.6 0.6 1.0 1 0 0 1 1 1 0 YndJ-like protein DUF63 PF01889.12 gi|313125738|ref|YP_004036008.1| - 3e-24 86.5 7.2 3.8e-24 86.2 5.0 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.4 gi|313125739|ref|YP_004036009.1| - 2.4e-42 144.8 4.1 2.7e-42 144.6 2.9 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|313125739|ref|YP_004036009.1| - 0.033 13.4 0.4 0.16 11.2 0.0 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein Radical_SAM PF04055.16 gi|313125740|ref|YP_004036010.1| - 1.9e-25 89.9 0.3 4.4e-25 88.7 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|313125740|ref|YP_004036010.1| - 7.4e-21 73.8 0.3 1.6e-20 72.7 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|313125740|ref|YP_004036010.1| - 0.0001 22.0 0.1 0.0002 21.0 0.0 1.6 1 0 0 1 1 1 1 TRAM domain Fer2 PF00111.22 gi|313125740|ref|YP_004036010.1| - 0.19 11.5 1.5 4.2 7.1 0.1 3.1 3 0 0 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Acetyltransf_1 PF00583.19 gi|313125741|ref|YP_004036011.1| - 5e-12 45.6 0.3 9.5e-12 44.7 0.1 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313125741|ref|YP_004036011.1| - 5.8e-11 42.4 0.0 9.2e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313125741|ref|YP_004036011.1| - 1.1e-07 31.7 1.0 1.4e-07 31.3 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313125741|ref|YP_004036011.1| - 1.5e-07 31.5 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125741|ref|YP_004036011.1| - 0.00084 19.1 0.1 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|313125741|ref|YP_004036011.1| - 0.0013 18.4 0.0 0.02 14.6 0.0 2.2 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|313125741|ref|YP_004036011.1| - 0.015 15.4 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_S24 PF00717.18 gi|313125742|ref|YP_004036012.1| - 0.0001 21.9 1.1 0.00026 20.5 0.8 1.7 1 1 0 1 1 1 1 Peptidase S24-like PepSY_TM_1 PF13172.1 gi|313125742|ref|YP_004036012.1| - 0.39 10.5 4.5 0.71 9.7 3.1 1.4 1 0 0 1 1 1 0 PepSY-associated TM helix Cation_efflux PF01545.16 gi|313125743|ref|YP_004036013.1| - 2.5e-58 197.4 0.2 2.8e-58 197.2 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family HIT PF01230.18 gi|313125744|ref|YP_004036014.1| - 9.3e-12 45.3 0.0 1.4e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|313125744|ref|YP_004036014.1| - 0.00012 22.2 0.0 0.00023 21.3 0.0 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|313125744|ref|YP_004036014.1| - 0.00026 20.6 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Peptidase_M24 PF00557.19 gi|313125745|ref|YP_004036015.1| - 1.1e-45 155.7 1.2 1.4e-45 155.3 0.8 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Metallophos PF00149.23 gi|313125746|ref|YP_004036016.1| - 3.9e-10 39.4 0.5 2.3e-09 36.9 0.4 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|313125746|ref|YP_004036016.1| - 2.5e-09 37.1 0.0 4.8e-09 36.2 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1403 PF07183.6 gi|313125746|ref|YP_004036016.1| - 0.014 14.8 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1403) Vps16_N PF04841.8 gi|313125746|ref|YP_004036016.1| - 0.16 10.4 0.0 0.22 10.0 0.0 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region Sensor PF13796.1 gi|313125747|ref|YP_004036017.1| - 2.5e-30 105.4 28.8 7.1e-30 103.9 19.9 1.7 1 1 0 1 1 1 1 Putative sensor PrgI PF12666.2 gi|313125747|ref|YP_004036017.1| - 1.6 8.9 17.3 0.4 10.8 3.1 2.8 3 0 0 3 3 3 0 PrgI family protein HTH_20 PF12840.2 gi|313125748|ref|YP_004036018.1| - 3.9e-08 32.9 1.3 6.5e-08 32.2 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313125748|ref|YP_004036018.1| - 0.00071 19.1 0.1 0.0012 18.4 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|313125748|ref|YP_004036018.1| - 0.00093 18.6 1.7 0.0018 17.7 1.2 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|313125748|ref|YP_004036018.1| - 0.0018 17.6 0.1 0.0027 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313125748|ref|YP_004036018.1| - 0.0024 17.5 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313125748|ref|YP_004036018.1| - 0.0038 16.8 0.2 0.0061 16.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|313125748|ref|YP_004036018.1| - 0.0054 17.0 0.2 0.014 15.7 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|313125748|ref|YP_004036018.1| - 0.0062 16.2 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|313125748|ref|YP_004036018.1| - 0.1 12.2 0.1 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain 7TMR-DISM_7TM PF07695.6 gi|313125749|ref|YP_004036019.1| - 0.11 12.2 5.3 0.14 11.8 3.7 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling COX14 PF14880.1 gi|313125749|ref|YP_004036019.1| - 0.45 10.1 3.3 0.2 11.3 0.7 1.6 2 0 0 2 2 2 0 Cytochrome oxidase c assembly DUF2474 PF10617.4 gi|313125749|ref|YP_004036019.1| - 0.62 9.7 10.9 2.4 7.8 1.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2474) DUF441 PF04284.8 gi|313125750|ref|YP_004036020.1| - 0.004 17.0 2.2 0.005 16.7 1.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF441) DUF3816 PF12822.2 gi|313125750|ref|YP_004036020.1| - 0.082 12.8 1.4 0.092 12.6 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) UAA PF08449.6 gi|313125750|ref|YP_004036020.1| - 0.089 11.6 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 UAA transporter family DUF3054 PF11255.3 gi|313125750|ref|YP_004036020.1| - 0.11 12.3 4.2 0.13 12.1 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3054) YtpI PF14007.1 gi|313125750|ref|YP_004036020.1| - 0.29 11.0 2.0 1.1 9.2 1.3 1.9 1 1 0 1 1 1 0 YtpI-like protein Yip1 PF04893.12 gi|313125750|ref|YP_004036020.1| - 0.37 10.2 6.4 0.48 9.9 4.5 1.1 1 0 0 1 1 1 0 Yip1 domain Bax1-I PF01027.15 gi|313125750|ref|YP_004036020.1| - 0.72 9.4 4.3 0.84 9.1 3.0 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 PetG PF02529.10 gi|313125750|ref|YP_004036020.1| - 0.77 9.3 5.5 0.79 9.2 0.0 2.9 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 Sensor PF13796.1 gi|313125751|ref|YP_004036021.1| - 2.3e-34 118.5 25.5 2.8e-34 118.3 17.7 1.1 1 0 0 1 1 1 1 Putative sensor MtrF PF09472.5 gi|313125751|ref|YP_004036021.1| - 0.15 11.2 2.3 0.46 9.7 1.6 1.9 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF4098 PF13345.1 gi|313125752|ref|YP_004036022.1| - 4.7e-19 68.1 41.4 2.6e-08 33.6 4.1 6.3 2 2 5 7 7 7 4 Domain of unknown function (DUF4098) Abhydrolase_2 PF02230.11 gi|313125753|ref|YP_004036023.1| - 4.6e-20 72.0 0.0 1.3e-19 70.4 0.0 1.6 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|313125753|ref|YP_004036023.1| - 3.1e-17 62.6 0.6 3.8e-17 62.4 0.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|313125753|ref|YP_004036023.1| - 8e-17 61.8 3.0 3e-13 50.1 0.9 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|313125753|ref|YP_004036023.1| - 5.7e-09 35.5 0.0 8.9e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|313125753|ref|YP_004036023.1| - 8.5e-08 31.6 0.4 0.025 13.7 0.0 3.0 2 1 1 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|313125753|ref|YP_004036023.1| - 9.4e-08 31.8 0.0 1.4e-07 31.3 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold PE-PPE PF08237.6 gi|313125753|ref|YP_004036023.1| - 0.00094 18.6 0.0 0.002 17.5 0.0 1.4 1 1 0 1 1 1 1 PE-PPE domain FSH1 PF03959.8 gi|313125753|ref|YP_004036023.1| - 0.0013 18.2 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.8 gi|313125753|ref|YP_004036023.1| - 0.004 16.7 0.2 0.03 13.9 0.1 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|313125753|ref|YP_004036023.1| - 0.0097 15.7 0.0 0.047 13.5 0.0 2.1 2 0 0 2 2 2 1 Putative lysophospholipase Esterase_phd PF10503.4 gi|313125753|ref|YP_004036023.1| - 0.014 14.6 0.4 0.041 13.1 0.2 2.0 1 1 1 2 2 2 0 Esterase PHB depolymerase Esterase PF00756.15 gi|313125753|ref|YP_004036023.1| - 0.021 14.2 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 Putative esterase DUF295 PF03478.13 gi|313125753|ref|YP_004036023.1| - 0.041 13.2 0.0 0.082 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF295) DUF676 PF05057.9 gi|313125753|ref|YP_004036023.1| - 0.059 12.6 0.0 0.28 10.4 0.0 1.9 1 1 0 1 1 1 0 Putative serine esterase (DUF676) AXE1 PF05448.7 gi|313125753|ref|YP_004036023.1| - 0.08 11.4 0.0 0.13 10.7 0.0 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) Cutinase PF01083.17 gi|313125753|ref|YP_004036023.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Cutinase Glyoxalase PF00903.20 gi|313125754|ref|YP_004036024.1| - 1.7e-30 105.5 1.0 3.2e-14 52.9 0.1 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|313125754|ref|YP_004036024.1| - 4.7e-14 52.9 2.7 1.1e-07 32.4 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|313125754|ref|YP_004036024.1| - 3.7e-05 23.6 0.2 0.081 12.9 0.0 2.8 2 1 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HxlR PF01638.12 gi|313125755|ref|YP_004036025.1| - 2.3e-21 75.2 0.0 3e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|313125755|ref|YP_004036025.1| - 4.5e-06 26.8 0.0 7.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313125755|ref|YP_004036025.1| - 4.1e-05 23.5 0.0 6.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313125755|ref|YP_004036025.1| - 0.00046 19.8 0.1 0.00081 19.0 0.1 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|313125755|ref|YP_004036025.1| - 0.0034 17.1 0.0 0.0051 16.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|313125755|ref|YP_004036025.1| - 0.0056 16.3 0.0 0.0076 15.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|313125755|ref|YP_004036025.1| - 0.0093 15.6 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313125755|ref|YP_004036025.1| - 0.017 14.7 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|313125755|ref|YP_004036025.1| - 0.066 13.0 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|313125755|ref|YP_004036025.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain ABC1 PF03109.11 gi|313125756|ref|YP_004036026.1| - 6e-29 100.4 0.1 2.8e-28 98.2 0.0 2.1 3 0 0 3 3 3 1 ABC1 family RIO1 PF01163.17 gi|313125756|ref|YP_004036026.1| - 7.8e-06 25.3 0.1 3.5e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|313125756|ref|YP_004036026.1| - 0.002 17.8 5.4 0.0074 16.0 1.2 3.3 2 1 0 2 2 2 1 Phosphotransferase enzyme family WaaY PF06176.6 gi|313125756|ref|YP_004036026.1| - 0.0092 15.2 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Lactamase_B_2 PF12706.2 gi|313125758|ref|YP_004036028.1| - 3.4e-18 65.9 0.1 4.6e-18 65.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|313125758|ref|YP_004036028.1| - 7.9e-10 38.6 1.5 1.2e-09 38.0 1.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|313125758|ref|YP_004036028.1| - 0.00043 20.0 0.0 0.00072 19.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DSBA PF01323.15 gi|313125759|ref|YP_004036029.1| - 1.5e-36 125.8 0.0 1.7e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|313125759|ref|YP_004036029.1| - 1.5e-08 34.7 0.6 3e-06 27.3 0.4 2.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|313125759|ref|YP_004036029.1| - 3e-05 24.1 0.2 0.0006 19.9 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|313125759|ref|YP_004036029.1| - 0.081 12.7 0.0 14 5.5 0.0 2.6 3 0 0 3 3 3 0 Thioredoxin domain adh_short PF00106.20 gi|313125760|ref|YP_004036030.1| - 3.9e-17 62.6 4.7 8.8e-17 61.5 3.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313125760|ref|YP_004036030.1| - 4.3e-08 33.0 1.3 8.4e-08 32.0 0.9 1.5 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|313125760|ref|YP_004036030.1| - 7e-05 22.9 1.5 0.00015 21.8 1.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|313125760|ref|YP_004036030.1| - 0.00013 21.5 0.1 0.00025 20.5 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|313125760|ref|YP_004036030.1| - 0.0042 16.8 0.0 0.0064 16.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase PknH_C PF14032.1 gi|313125760|ref|YP_004036030.1| - 0.048 13.2 0.4 0.092 12.3 0.3 1.4 1 0 0 1 1 1 0 PknH-like extracellular domain RmlD_sub_bind PF04321.12 gi|313125760|ref|YP_004036030.1| - 0.1 11.4 0.1 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Glyco_trans_4_4 PF13579.1 gi|313125760|ref|YP_004036030.1| - 0.29 11.2 5.0 1.3 9.1 2.8 2.2 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Asparaginase_2 PF01112.13 gi|313125761|ref|YP_004036031.1| - 2.6e-55 187.4 9.7 2.8e-55 187.2 6.7 1.0 1 0 0 1 1 1 1 Asparaginase Iso_dh PF00180.15 gi|313125762|ref|YP_004036032.1| - 2.4e-108 362.1 0.1 5.3e-108 361.0 0.0 1.5 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Glyoxalase_4 PF13669.1 gi|313125763|ref|YP_004036033.1| - 4.9e-11 42.6 0.3 6.1e-11 42.2 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|313125763|ref|YP_004036033.1| - 1.8e-08 34.9 0.5 2.2e-08 34.6 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313125763|ref|YP_004036033.1| - 1.9e-07 31.1 1.6 1.5e-06 28.1 1.1 1.9 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313125763|ref|YP_004036033.1| - 0.087 12.7 0.6 0.6 9.9 0.4 1.9 1 1 0 1 1 1 0 Glyoxalase-like domain Peptidase_S11 PF00768.15 gi|313125764|ref|YP_004036034.1| - 0.0039 16.5 0.0 0.0045 16.2 0.0 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase DUF1922 PF09082.5 gi|313125764|ref|YP_004036034.1| - 0.0097 15.9 0.2 0.018 15.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Zn-ribbon_8 PF09723.5 gi|313125764|ref|YP_004036034.1| - 0.021 14.7 1.2 0.057 13.3 0.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain TrmB PF01978.14 gi|313125764|ref|YP_004036034.1| - 0.037 13.7 0.4 0.085 12.5 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB zf-Di19 PF05605.7 gi|313125764|ref|YP_004036034.1| - 0.041 14.0 0.0 0.07 13.2 0.0 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.7 gi|313125764|ref|YP_004036034.1| - 0.052 12.8 0.5 0.21 10.9 0.4 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|313125764|ref|YP_004036034.1| - 0.057 13.1 0.5 0.12 12.0 0.3 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|313125764|ref|YP_004036034.1| - 0.084 12.5 0.6 0.24 11.0 0.4 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Pex14_N PF04695.8 gi|313125764|ref|YP_004036034.1| - 0.093 12.7 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DZR PF12773.2 gi|313125764|ref|YP_004036034.1| - 0.11 12.3 0.8 0.2 11.4 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon ECM11 PF15463.1 gi|313125764|ref|YP_004036034.1| - 0.12 12.7 1.1 0.15 12.3 0.8 1.2 1 0 0 1 1 1 0 Extracellular mutant protein 11 Fe-ADH PF00465.14 gi|313125764|ref|YP_004036034.1| - 0.14 10.7 1.2 0.2 10.2 0.8 1.2 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Rrf2 PF02082.15 gi|313125764|ref|YP_004036034.1| - 0.14 12.2 0.2 0.36 10.9 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator zf-ribbon_3 PF13248.1 gi|313125764|ref|YP_004036034.1| - 2.2 7.5 4.4 5.5 6.3 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain FYDLN_acid PF09538.5 gi|313125764|ref|YP_004036034.1| - 2.4 8.7 5.0 7.2 7.2 3.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) FA_desaturase PF00487.19 gi|313125767|ref|YP_004036037.1| - 0.69 9.2 3.8 0.85 8.9 2.6 1.3 1 0 0 1 1 1 0 Fatty acid desaturase UPF0197 PF05251.7 gi|313125767|ref|YP_004036037.1| - 1.6 9.0 4.8 18 5.7 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0197) DUF308 PF03729.8 gi|313125767|ref|YP_004036037.1| - 8.2 6.4 22.1 2.2 8.3 1.7 2.7 1 1 2 3 3 3 0 Short repeat of unknown function (DUF308) DUF2892 PF11127.3 gi|313125768|ref|YP_004036038.1| - 9.6e-16 57.3 1.5 1.2e-15 57.0 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF4118 PF13493.1 gi|313125768|ref|YP_004036038.1| - 0.085 13.0 0.2 0.098 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) HTH_10 PF04967.7 gi|313125769|ref|YP_004036039.1| - 1.4e-17 63.0 0.0 2e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HMG-CoA_red PF00368.13 gi|313125770|ref|YP_004036040.1| - 1.5e-139 464.8 3.3 1.7e-139 464.6 2.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Amidohydro_3 PF07969.6 gi|313125771|ref|YP_004036041.1| - 7.6e-81 272.3 10.4 8.8e-81 272.1 7.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313125771|ref|YP_004036041.1| - 6.2e-11 41.9 0.3 2.5e-10 40.0 0.1 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|313125771|ref|YP_004036041.1| - 1.8e-10 41.0 2.1 2.3e-09 37.3 1.4 2.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313125771|ref|YP_004036041.1| - 4.9e-08 33.3 19.8 0.00045 20.3 2.7 2.9 2 2 0 2 2 2 2 Amidohydrolase AIRS_C PF02769.17 gi|313125771|ref|YP_004036041.1| - 0.066 13.2 0.1 0.25 11.3 0.1 1.9 1 1 0 1 1 1 0 AIR synthase related protein, C-terminal domain NadA PF02445.11 gi|313125772|ref|YP_004036042.1| - 1e-99 333.1 0.0 1.2e-99 332.9 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|313125773|ref|YP_004036043.1| - 5.5e-80 269.2 9.5 7.2e-80 268.8 6.6 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|313125773|ref|YP_004036043.1| - 7.7e-10 38.1 4.3 6.2e-08 31.9 0.5 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313125773|ref|YP_004036043.1| - 8.1e-08 32.3 8.3 1.6e-06 28.1 5.1 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313125773|ref|YP_004036043.1| - 4.3e-07 29.1 1.4 1.4e-05 24.1 1.9 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313125773|ref|YP_004036043.1| - 5.7e-06 25.6 8.5 1.5e-05 24.2 5.5 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313125773|ref|YP_004036043.1| - 4.1e-05 22.2 0.3 0.041 12.3 0.4 2.3 2 0 0 2 2 2 2 HI0933-like protein Succ_DH_flav_C PF02910.15 gi|313125773|ref|YP_004036043.1| - 7.9e-05 22.5 0.3 0.00014 21.7 0.2 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.1 gi|313125773|ref|YP_004036043.1| - 0.0022 17.9 1.6 0.0062 16.5 1.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|313125773|ref|YP_004036043.1| - 0.0075 15.3 0.1 0.014 14.4 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|313125773|ref|YP_004036043.1| - 0.019 14.0 0.6 0.036 13.1 0.2 1.6 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.16 gi|313125773|ref|YP_004036043.1| - 0.036 13.6 0.2 0.074 12.6 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|313125773|ref|YP_004036043.1| - 0.11 12.9 0.4 0.34 11.3 0.2 1.9 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase QRPTase_C PF01729.14 gi|313125774|ref|YP_004036044.1| - 2.8e-53 179.8 0.3 3.8e-53 179.4 0.2 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|313125774|ref|YP_004036044.1| - 2.7e-20 71.9 0.1 6.5e-20 70.7 0.0 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|313125774|ref|YP_004036044.1| - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family OMPdecase PF00215.19 gi|313125775|ref|YP_004036045.1| - 9.4e-34 116.7 0.0 1.1e-33 116.5 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family zf-HIT PF04438.11 gi|313125776|ref|YP_004036046.1| - 0.0016 18.0 2.6 0.0016 18.0 1.8 2.0 2 0 0 2 2 2 1 HIT zinc finger zf-C3HC4_3 PF13920.1 gi|313125776|ref|YP_004036046.1| - 0.042 13.5 10.2 0.11 12.2 7.1 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-B_box PF00643.19 gi|313125776|ref|YP_004036046.1| - 0.056 13.3 5.2 0.056 13.3 3.6 2.1 1 1 0 2 2 2 0 B-box zinc finger zf-UBP PF02148.14 gi|313125776|ref|YP_004036046.1| - 0.067 13.3 6.5 0.13 12.4 4.5 1.6 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-C3HC4_2 PF13923.1 gi|313125776|ref|YP_004036046.1| - 0.3 11.1 5.2 1.8 8.6 3.6 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF3795 PF12675.2 gi|313125776|ref|YP_004036046.1| - 0.38 10.9 7.4 0.47 10.6 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) DUF2180 PF09947.4 gi|313125776|ref|YP_004036046.1| - 1.3 8.8 8.3 0.93 9.2 4.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) Prok-RING_2 PF14445.1 gi|313125776|ref|YP_004036046.1| - 2.9 7.9 7.2 3.8 7.5 5.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 PHD_3 PF13922.1 gi|313125776|ref|YP_004036046.1| - 3.1 8.1 10.1 5.1 7.4 7.0 1.4 1 1 0 1 1 1 0 PHD domain of transcriptional enhancer, Asx DZR PF12773.2 gi|313125776|ref|YP_004036046.1| - 3.5 7.5 10.9 25 4.7 7.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon DnaJ PF00226.26 gi|313125777|ref|YP_004036047.1| - 1.9e-16 59.5 0.1 6.6e-16 57.8 0.0 1.8 1 1 1 2 2 2 1 DnaJ domain RPT PF13446.1 gi|313125777|ref|YP_004036047.1| - 0.032 13.6 0.0 0.058 12.8 0.0 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein GTP_EFTU PF00009.22 gi|313125778|ref|YP_004036048.1| - 2.2e-34 118.5 0.0 3.3e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|313125778|ref|YP_004036048.1| - 2.7e-16 59.5 0.0 5.8e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|313125778|ref|YP_004036048.1| - 1.8e-10 40.7 0.6 7.6e-10 38.7 0.4 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 2 ATP_bind_1 PF03029.12 gi|313125778|ref|YP_004036048.1| - 0.0013 18.3 1.4 0.0056 16.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU_D4 PF14578.1 gi|313125778|ref|YP_004036048.1| - 0.004 16.7 0.3 0.011 15.3 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|313125778|ref|YP_004036048.1| - 0.012 15.5 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase GIY-YIG PF01541.19 gi|313125779|ref|YP_004036049.1| - 0.036 14.4 0.1 0.091 13.1 0.0 1.7 1 0 0 1 1 1 0 GIY-YIG catalytic domain HAD_2 PF13419.1 gi|313125780|ref|YP_004036050.1| - 7.1e-27 94.7 0.1 8.5e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313125780|ref|YP_004036050.1| - 1.4e-09 38.7 0.2 1.3e-08 35.4 0.2 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125780|ref|YP_004036050.1| - 2.3e-09 36.8 0.2 3.8e-09 36.1 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|313125780|ref|YP_004036050.1| - 0.046 13.3 0.0 1.9 8.1 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase HAD PF12710.2 gi|313125780|ref|YP_004036050.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Peptidase_M48 PF01435.13 gi|313125781|ref|YP_004036051.1| - 3.3e-40 138.0 0.0 4.8e-40 137.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|313125781|ref|YP_004036051.1| - 0.0037 16.2 0.0 0.0098 14.8 0.0 1.7 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF2268 PF10026.4 gi|313125781|ref|YP_004036051.1| - 0.013 14.9 0.1 0.036 13.4 0.0 1.7 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) DUF3318 PF11780.3 gi|313125781|ref|YP_004036051.1| - 1.3 8.5 6.6 5.6 6.5 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3318) MCH PF02289.11 gi|313125783|ref|YP_004036053.1| - 9.9e-95 317.1 0.1 1.1e-94 316.9 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF77 PF01910.12 gi|313125784|ref|YP_004036054.1| - 1.4e-22 79.1 0.4 1.7e-22 78.8 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF77 Virul_fac_BrkB PF03631.10 gi|313125785|ref|YP_004036055.1| - 3.8e-38 131.3 21.4 4.6e-38 131.0 14.8 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF1422 PF07226.6 gi|313125785|ref|YP_004036055.1| - 7.5 6.3 9.8 13 5.5 3.6 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1422) ACT_3 PF10000.4 gi|313125786|ref|YP_004036056.1| - 0.076 12.7 0.6 0.45 10.2 0.1 2.1 2 1 0 2 2 2 0 ACT domain DUF1949 PF09186.6 gi|313125786|ref|YP_004036056.1| - 0.13 11.8 0.9 2.1 8.0 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) UbiA PF01040.13 gi|313125787|ref|YP_004036057.1| - 9.3e-10 38.1 41.3 2.5e-08 33.4 28.6 2.5 1 1 0 1 1 1 1 UbiA prenyltransferase family Copper-bind PF00127.15 gi|313125788|ref|YP_004036058.1| - 7.8e-14 51.7 0.0 1e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Myco_19_kDa PF05481.7 gi|313125788|ref|YP_004036058.1| - 0.0034 17.2 0.1 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycobacterium 19 kDa lipoprotein antigen Cupredoxin_1 PF13473.1 gi|313125788|ref|YP_004036058.1| - 0.074 12.9 0.0 0.12 12.2 0.0 1.4 1 1 0 1 1 1 0 Cupredoxin-like domain Methyltrn_RNA_3 PF02598.12 gi|313125789|ref|YP_004036059.1| - 2.2e-50 171.6 0.0 2.5e-50 171.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.14 gi|313125789|ref|YP_004036059.1| - 0.013 14.9 0.3 0.048 13.0 0.2 1.9 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.17 gi|313125790|ref|YP_004036060.1| - 1.4e-87 293.4 0.0 2.5e-87 292.6 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|313125791|ref|YP_004036061.1| - 2.7e-44 150.8 0.5 3.1e-44 150.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|313125792|ref|YP_004036062.1| - 2.5e-19 69.0 0.5 3.4e-19 68.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.13 gi|313125793|ref|YP_004036063.1| - 1.4e-47 160.7 1.9 2e-47 160.2 1.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|313125793|ref|YP_004036063.1| - 4.6e-17 61.7 0.0 1.6e-16 59.9 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|313125794|ref|YP_004036064.1| - 1.1e-27 95.4 0.0 1.4e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L22 PF00237.14 gi|313125795|ref|YP_004036065.1| - 5.1e-23 81.0 0.0 6e-23 80.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ATP-grasp_5 PF13549.1 gi|313125795|ref|YP_004036065.1| - 0.082 12.1 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain KH_2 PF07650.12 gi|313125796|ref|YP_004036066.1| - 6.6e-17 60.8 0.0 1.5e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|313125796|ref|YP_004036066.1| - 2.6e-15 56.3 0.2 4.1e-15 55.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|313125796|ref|YP_004036066.1| - 0.00018 21.0 1.2 0.00053 19.5 0.0 2.4 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|313125796|ref|YP_004036066.1| - 0.0059 16.2 0.0 0.027 14.1 0.0 2.2 1 0 0 1 1 1 1 KH domain KH_5 PF13184.1 gi|313125796|ref|YP_004036066.1| - 0.065 13.0 0.0 0.32 10.8 0.0 2.2 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.1 gi|313125796|ref|YP_004036066.1| - 1.1 8.9 9.2 0.23 11.1 0.2 3.1 2 1 1 3 3 3 0 KH domain Ribosomal_L29 PF00831.18 gi|313125797|ref|YP_004036067.1| - 2.1e-18 65.7 0.4 2.3e-18 65.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein RPAP1_N PF08621.5 gi|313125797|ref|YP_004036067.1| - 0.17 11.5 0.4 0.17 11.5 0.3 1.6 2 0 0 2 2 2 0 RPAP1-like, N-terminal DUF1192 PF06698.6 gi|313125797|ref|YP_004036067.1| - 0.4 10.5 3.3 9.8 6.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) UPF0086 PF01868.11 gi|313125798|ref|YP_004036068.1| - 5.4e-23 80.4 0.0 7.7e-23 79.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|313125799|ref|YP_004036069.1| - 3.4e-28 97.4 0.7 4.1e-28 97.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Toxin_31 PF08119.6 gi|313125799|ref|YP_004036069.1| - 0.025 14.1 1.2 0.039 13.4 0.8 1.3 1 0 0 1 1 1 0 Scorpion acidic alpha-KTx toxin family Ribosomal_L14 PF00238.14 gi|313125800|ref|YP_004036070.1| - 3e-37 127.0 0.1 3.3e-37 126.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|313125801|ref|YP_004036071.1| - 0.00013 21.4 0.1 0.00025 20.6 0.1 1.5 1 0 0 1 1 1 1 KOW motif Methyltrans_RNA PF04452.9 gi|313125801|ref|YP_004036071.1| - 0.069 12.2 0.0 0.089 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase DapH_N PF08503.5 gi|313125801|ref|YP_004036071.1| - 0.082 13.0 0.0 1.4 9.0 0.0 2.0 1 1 1 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal DbpA PF03880.10 gi|313125801|ref|YP_004036071.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 DbpA RNA binding domain Ribosomal_S4e PF00900.15 gi|313125802|ref|YP_004036072.1| - 9.5e-27 92.4 0.0 2e-26 91.4 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|313125802|ref|YP_004036072.1| - 7.6e-15 54.4 0.2 1.4e-14 53.6 0.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|313125802|ref|YP_004036072.1| - 0.0027 17.3 0.1 0.0027 17.3 0.1 2.3 3 0 0 3 3 3 1 KOW motif BiPBP_C PF06832.7 gi|313125802|ref|YP_004036072.1| - 0.013 15.3 0.0 2.1 8.3 0.0 2.6 2 1 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family S4 PF01479.20 gi|313125802|ref|YP_004036072.1| - 0.015 14.6 0.0 0.025 13.9 0.0 1.4 1 0 0 1 1 1 0 S4 domain Ribosomal_L5_C PF00673.16 gi|313125803|ref|YP_004036073.1| - 2.8e-23 81.4 0.0 4.4e-23 80.8 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|313125803|ref|YP_004036073.1| - 4.5e-15 55.1 0.0 9.5e-15 54.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|313125804|ref|YP_004036074.1| - 1.7e-16 59.3 3.8 2e-16 59.1 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|313125804|ref|YP_004036074.1| - 0.026 14.2 0.5 0.032 13.9 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) DUF2616 PF11077.3 gi|313125804|ref|YP_004036074.1| - 0.075 12.5 0.5 0.072 12.5 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) Ribosomal_S8 PF00410.14 gi|313125805|ref|YP_004036075.1| - 4e-23 81.6 0.0 5.7e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 EIIA-man PF03610.11 gi|313125805|ref|YP_004036075.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 PTS system fructose IIA component Ribosomal_L6 PF00347.18 gi|313125806|ref|YP_004036076.1| - 2.4e-26 92.0 0.8 2.3e-12 47.2 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.12 gi|313125806|ref|YP_004036076.1| - 0.069 12.9 2.6 2.3 8.0 0.0 3.5 4 0 0 4 4 4 0 BON domain OspE PF02471.12 gi|313125806|ref|YP_004036076.1| - 0.097 12.5 0.2 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Borrelia outer surface protein E YugN PF08868.5 gi|313125806|ref|YP_004036076.1| - 0.15 11.6 0.6 0.29 10.7 0.4 1.5 1 1 0 1 1 1 0 YugN-like family HSP20 PF00011.16 gi|313125806|ref|YP_004036076.1| - 0.19 11.6 5.9 0.34 10.8 0.2 3.3 2 2 2 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_L32e PF01655.13 gi|313125807|ref|YP_004036077.1| - 1e-38 131.7 0.5 6.7e-38 129.1 0.3 2.0 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|313125807|ref|YP_004036077.1| - 4.8e-14 52.2 6.7 5.4e-12 45.7 0.6 2.6 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH PF00633.18 gi|313125807|ref|YP_004036077.1| - 2e-08 33.4 0.8 0.0098 15.5 0.1 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|313125807|ref|YP_004036077.1| - 2.3e-07 30.2 0.0 1e-06 28.1 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|313125807|ref|YP_004036077.1| - 3.6e-05 23.5 0.4 0.00011 22.0 0.2 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|313125807|ref|YP_004036077.1| - 0.00053 19.8 0.0 0.0036 17.1 0.0 2.4 2 1 1 3 3 3 1 Pathogenicity locus HHH_3 PF12836.2 gi|313125807|ref|YP_004036077.1| - 0.0018 18.1 0.1 0.27 11.1 0.1 2.5 1 1 1 2 2 2 1 Helix-hairpin-helix motif Spt5_N PF11942.3 gi|313125807|ref|YP_004036077.1| - 0.019 15.5 5.5 0.019 15.5 3.8 2.3 2 0 0 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal HHH_8 PF14716.1 gi|313125807|ref|YP_004036077.1| - 0.026 14.6 0.9 1.7 8.8 0.0 2.8 2 1 1 3 3 3 0 Helix-hairpin-helix domain Ribosomal_L19e PF01280.15 gi|313125808|ref|YP_004036078.1| - 1.4e-56 190.3 3.4 1.6e-56 190.1 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Vps35 PF03635.12 gi|313125808|ref|YP_004036078.1| - 0.11 10.5 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Ribosomal_L18p PF00861.17 gi|313125809|ref|YP_004036079.1| - 1.5e-34 118.7 0.0 1.8e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|313125810|ref|YP_004036080.1| - 4.5e-26 90.3 0.5 9.8e-26 89.3 0.3 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|313125810|ref|YP_004036080.1| - 5.4e-22 76.8 0.2 8.5e-22 76.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|313125811|ref|YP_004036081.1| - 2.9e-11 42.7 0.0 4.4e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Phage-tail_3 PF13550.1 gi|313125811|ref|YP_004036081.1| - 0.016 15.0 0.2 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 Putative phage tail protein OHCU_decarbox PF09349.5 gi|313125811|ref|YP_004036081.1| - 0.042 14.1 0.0 0.063 13.5 0.0 1.3 1 0 0 1 1 1 0 OHCU decarboxylase Med8 PF10232.4 gi|313125811|ref|YP_004036081.1| - 0.16 11.4 0.8 0.25 10.8 0.5 1.6 1 1 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 Ribosomal_L18e PF00828.14 gi|313125812|ref|YP_004036082.1| - 2.1e-24 86.3 0.5 2.1e-24 86.3 0.4 1.5 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|313125813|ref|YP_004036083.1| - 1.7e-94 316.5 19.3 2.1e-94 316.2 13.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|313125813|ref|YP_004036083.1| - 2.2e-08 33.4 1.8 7.3e-08 31.7 1.2 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p DUF4399 PF14347.1 gi|313125814|ref|YP_004036084.1| - 5.5e-37 125.6 8.6 3.8e-23 81.3 0.8 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4399) adh_short PF00106.20 gi|313125815|ref|YP_004036085.1| - 2.2e-45 154.5 6.7 2.2e-45 154.5 4.7 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313125815|ref|YP_004036085.1| - 1.3e-29 103.7 0.2 1.5e-29 103.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313125815|ref|YP_004036085.1| - 4.5e-22 78.5 3.4 6.9e-22 77.9 2.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313125815|ref|YP_004036085.1| - 6.5e-06 25.7 0.7 1.4e-05 24.6 0.5 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313125815|ref|YP_004036085.1| - 4.3e-05 23.5 3.4 6e-05 23.1 2.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|313125815|ref|YP_004036085.1| - 0.011 15.4 1.0 0.021 14.5 0.7 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|313125815|ref|YP_004036085.1| - 0.015 15.2 0.6 0.032 14.2 0.4 1.5 1 0 0 1 1 1 0 TrkA-N domain NmrA PF05368.8 gi|313125815|ref|YP_004036085.1| - 0.024 13.8 0.8 0.039 13.2 0.6 1.2 1 0 0 1 1 1 0 NmrA-like family RmlD_sub_bind PF04321.12 gi|313125815|ref|YP_004036085.1| - 0.025 13.4 0.2 0.054 12.3 0.2 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain THF_DHG_CYH_C PF02882.14 gi|313125815|ref|YP_004036085.1| - 0.1 11.6 0.0 0.26 10.3 0.0 1.7 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ETF PF01012.16 gi|313125815|ref|YP_004036085.1| - 0.1 12.2 8.6 0.067 12.9 1.9 2.3 2 1 0 2 2 2 0 Electron transfer flavoprotein domain Robl_LC7 PF03259.12 gi|313125815|ref|YP_004036085.1| - 0.29 10.7 5.3 7.1 6.2 0.1 3.6 3 2 0 3 3 3 0 Roadblock/LC7 domain LytR_C PF13399.1 gi|313125815|ref|YP_004036085.1| - 2 8.8 7.3 1.4 9.3 1.7 2.7 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Acyl_transf_1 PF00698.16 gi|313125816|ref|YP_004036086.1| - 1.8e-43 149.1 0.2 2.2e-43 148.8 0.1 1.0 1 0 0 1 1 1 1 Acyl transferase domain Abhydrolase_5 PF12695.2 gi|313125816|ref|YP_004036086.1| - 0.028 14.1 0.2 0.045 13.5 0.2 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family ACPS PF01648.15 gi|313125817|ref|YP_004036087.1| - 4.5e-14 52.2 0.0 5.5e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily ketoacyl-synt PF00109.21 gi|313125818|ref|YP_004036088.1| - 5.9e-53 179.9 12.3 2.1e-52 178.1 6.2 2.1 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|313125818|ref|YP_004036088.1| - 5.1e-31 106.9 3.7 1.4e-30 105.5 1.7 2.3 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.18 gi|313125818|ref|YP_004036088.1| - 5.4e-05 22.3 0.1 0.00011 21.3 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain PP-binding PF00550.20 gi|313125819|ref|YP_004036089.1| - 2.7e-12 46.7 1.2 3.1e-12 46.5 0.9 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site Ribosomal_L50 PF10501.4 gi|313125819|ref|YP_004036089.1| - 0.012 15.6 0.0 0.012 15.6 0.0 1.3 1 1 0 1 1 1 0 Ribosomal subunit 39S PP-binding_2 PF14573.1 gi|313125819|ref|YP_004036089.1| - 0.054 13.5 1.7 0.084 12.9 1.1 1.6 1 1 0 1 1 1 0 Acyl-carrier ADH_zinc_N PF00107.21 gi|313125820|ref|YP_004036090.1| - 8.7e-30 102.9 1.2 1.5e-29 102.1 0.8 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|313125820|ref|YP_004036090.1| - 6.1e-21 75.6 1.7 1.3e-20 74.5 1.2 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313125820|ref|YP_004036090.1| - 5.5e-10 38.9 0.0 1.8e-09 37.3 0.0 1.9 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|313125820|ref|YP_004036090.1| - 0.0034 17.4 3.2 0.0059 16.6 2.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding Ribonuc_red_sm PF00268.16 gi|313125821|ref|YP_004036091.1| - 0.00012 21.2 0.0 0.00088 18.3 0.0 1.9 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.3 gi|313125821|ref|YP_004036091.1| - 0.004 16.1 2.5 0.073 11.9 0.3 2.5 2 1 0 2 2 2 2 P-aminobenzoate N-oxygenase AurF RdRP_4 PF02123.11 gi|313125821|ref|YP_004036091.1| - 0.14 10.8 0.0 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 Viral RNA-directed RNA-polymerase CBS PF00571.23 gi|313125822|ref|YP_004036092.1| - 1.4e-20 72.8 1.2 1.8e-11 43.6 0.0 2.5 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|313125822|ref|YP_004036092.1| - 3.7e-07 30.1 0.0 1.1e-06 28.6 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|313125822|ref|YP_004036092.1| - 0.015 15.1 0.1 0.15 11.8 0.0 2.1 1 1 0 1 1 1 0 Putative ParB-like nuclease Abhydrolase_6 PF12697.2 gi|313125824|ref|YP_004036094.1| - 3.2e-25 89.3 3.1 4.2e-25 88.9 2.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313125824|ref|YP_004036094.1| - 3.4e-22 78.7 0.4 1.5e-20 73.4 0.2 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|313125824|ref|YP_004036094.1| - 4.9e-09 35.7 0.0 1.1e-06 28.1 0.0 2.3 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|313125824|ref|YP_004036094.1| - 1.3e-08 34.6 0.0 3.3e-07 30.0 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|313125824|ref|YP_004036094.1| - 1.5e-07 30.8 0.0 0.0024 17.1 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|313125824|ref|YP_004036094.1| - 2.5e-06 27.2 0.0 4.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|313125824|ref|YP_004036094.1| - 7.4e-06 25.5 0.0 2.1e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|313125824|ref|YP_004036094.1| - 0.00043 18.8 0.0 0.073 11.5 0.0 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.5 gi|313125824|ref|YP_004036094.1| - 0.0045 16.8 0.0 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein Saccharop_dh_N PF04455.7 gi|313125825|ref|YP_004036095.1| - 3.6e-37 126.6 0.1 7.7e-37 125.5 0.1 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|313125825|ref|YP_004036095.1| - 0.00023 20.9 0.2 0.0071 16.1 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Usp PF00582.21 gi|313125826|ref|YP_004036096.1| - 1.6e-14 54.2 0.1 1.9e-14 54.0 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2411 PF10304.4 gi|313125826|ref|YP_004036096.1| - 0.055 13.0 1.6 0.21 11.2 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2411) CARDB PF07705.6 gi|313125827|ref|YP_004036097.1| - 5.1e-06 26.4 3.8 6.7e-05 22.8 0.2 2.3 2 0 0 2 2 2 2 CARDB GPI-anchored PF10342.4 gi|313125827|ref|YP_004036097.1| - 0.0025 18.2 0.6 0.83 10.1 0.2 2.4 2 0 0 2 2 2 2 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Transglut_C PF00927.17 gi|313125827|ref|YP_004036097.1| - 0.0065 16.4 0.1 0.84 9.6 0.0 2.8 2 1 1 3 3 3 1 Transglutaminase family, C-terminal ig like domain NKAIN PF05640.9 gi|313125828|ref|YP_004036098.1| - 0.0095 14.9 1.6 0.013 14.5 1.1 1.1 1 0 0 1 1 1 1 Na,K-Atpase Interacting protein DUF3902 PF13042.1 gi|313125828|ref|YP_004036098.1| - 0.052 12.8 1.4 0.062 12.5 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3902) DUF3112 PF11309.3 gi|313125828|ref|YP_004036098.1| - 0.076 12.8 1.2 0.099 12.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) DUF805 PF05656.9 gi|313125828|ref|YP_004036098.1| - 0.54 10.0 2.6 0.74 9.6 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) HATPase_c PF02518.21 gi|313125829|ref|YP_004036099.1| - 8.9e-16 57.5 0.1 3.6e-15 55.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|313125829|ref|YP_004036099.1| - 1.4e-15 57.0 0.2 5.8e-15 55.0 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|313125829|ref|YP_004036099.1| - 2.5e-12 47.0 0.0 2e-11 44.2 0.0 2.5 3 1 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|313125829|ref|YP_004036099.1| - 2e-08 34.2 0.2 6e-08 32.6 0.1 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|313125829|ref|YP_004036099.1| - 6.6e-06 25.8 0.0 2.3e-05 24.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|313125829|ref|YP_004036099.1| - 1.6e-05 24.6 0.0 4e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|313125829|ref|YP_004036099.1| - 4.3e-05 23.4 0.1 0.00069 19.6 0.0 2.7 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|313125829|ref|YP_004036099.1| - 0.0012 18.5 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313125829|ref|YP_004036099.1| - 0.021 14.8 0.2 0.091 12.7 0.2 2.1 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Erythro-docking PF09277.6 gi|313125829|ref|YP_004036099.1| - 0.14 11.8 3.0 4.7 6.9 0.0 3.4 4 0 0 4 4 4 0 Erythronolide synthase, docking Imm16 PF15565.1 gi|313125829|ref|YP_004036099.1| - 0.34 10.7 2.0 8.8 6.2 0.1 3.1 2 1 1 3 3 3 0 Immunity protein 16 Zip PF02535.17 gi|313125830|ref|YP_004036100.1| - 1.6e-06 27.3 6.5 1.6e-06 27.3 4.5 2.3 2 1 0 2 2 2 2 ZIP Zinc transporter adh_short PF00106.20 gi|313125831|ref|YP_004036101.1| - 2.6e-26 92.5 3.2 3.3e-26 92.2 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313125831|ref|YP_004036101.1| - 3.8e-17 62.8 0.0 5e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313125831|ref|YP_004036101.1| - 1.9e-11 43.9 0.8 2.4e-11 43.6 0.5 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313125831|ref|YP_004036101.1| - 0.00012 21.5 4.3 0.00013 21.5 0.4 2.6 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|313125831|ref|YP_004036101.1| - 0.00088 18.2 0.0 0.0013 17.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313125831|ref|YP_004036101.1| - 0.0016 18.5 2.3 0.0035 17.3 1.6 1.7 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|313125831|ref|YP_004036101.1| - 0.0022 17.7 0.2 0.005 16.5 0.2 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase THF_DHG_CYH_C PF02882.14 gi|313125831|ref|YP_004036101.1| - 0.0067 15.5 1.1 0.0068 15.4 0.1 1.5 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.8 gi|313125831|ref|YP_004036101.1| - 0.02 14.1 0.2 0.032 13.4 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family DUF162 PF02589.10 gi|313125831|ref|YP_004036101.1| - 0.088 12.3 0.2 2.1 7.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised ACR, YkgG family COG1556 Amino_oxidase PF01593.19 gi|313125832|ref|YP_004036102.1| - 6.1e-24 84.9 0.1 1.3e-23 83.8 0.0 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|313125832|ref|YP_004036102.1| - 2.1e-17 62.8 0.1 4.6e-17 61.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313125832|ref|YP_004036102.1| - 1.9e-14 53.3 0.0 7e-09 35.0 0.0 2.8 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|313125832|ref|YP_004036102.1| - 3.9e-08 33.5 1.7 3.7e-06 27.2 0.3 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313125832|ref|YP_004036102.1| - 2.1e-06 26.8 1.7 3.3e-06 26.2 1.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|313125832|ref|YP_004036102.1| - 6.1e-06 24.9 0.0 0.00087 17.8 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|313125832|ref|YP_004036102.1| - 6.7e-06 26.3 0.7 0.0012 18.9 0.2 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|313125832|ref|YP_004036102.1| - 7.9e-06 25.8 0.1 5.3e-05 23.2 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|313125832|ref|YP_004036102.1| - 6.5e-05 22.1 0.5 0.00011 21.3 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|313125832|ref|YP_004036102.1| - 7.5e-05 21.9 1.0 0.00013 21.1 0.7 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|313125832|ref|YP_004036102.1| - 9.5e-05 21.5 0.5 0.00018 20.7 0.3 1.3 1 0 0 1 1 1 1 Thi4 family Strep_67kDa_ant PF06100.6 gi|313125832|ref|YP_004036102.1| - 0.0025 16.2 0.0 0.0035 15.7 0.0 1.2 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_7 PF13241.1 gi|313125832|ref|YP_004036102.1| - 0.0048 17.1 0.0 0.0084 16.3 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.17 gi|313125832|ref|YP_004036102.1| - 0.027 13.3 1.2 0.041 12.7 0.8 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|313125832|ref|YP_004036102.1| - 0.087 12.5 0.7 0.98 9.1 0.0 2.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|313125832|ref|YP_004036102.1| - 0.09 12.4 0.2 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|313125832|ref|YP_004036102.1| - 0.11 11.8 0.9 0.2 10.9 0.6 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|313125832|ref|YP_004036102.1| - 0.16 10.5 0.5 0.27 9.8 0.3 1.3 1 0 0 1 1 1 0 Tryptophan halogenase UbiA PF01040.13 gi|313125833|ref|YP_004036103.1| - 8.6e-29 100.5 23.9 1.1e-28 100.2 16.6 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF422 PF04240.7 gi|313125834|ref|YP_004036104.1| - 3.4e-73 245.6 18.3 4.3e-73 245.2 12.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF2512 PF10710.4 gi|313125834|ref|YP_004036104.1| - 1.3 8.4 3.6 0.33 10.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) SQS_PSY PF00494.14 gi|313125835|ref|YP_004036105.1| - 4e-65 219.7 11.6 5.1e-65 219.4 8.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase zf-tcix PF14952.1 gi|313125836|ref|YP_004036106.1| - 0.065 12.5 1.2 0.11 11.9 0.8 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.1 gi|313125836|ref|YP_004036106.1| - 2 8.3 6.7 3.3 7.6 4.6 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_5 PF01022.15 gi|313125837|ref|YP_004036107.1| - 1.6e-08 34.0 0.0 2.5e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313125837|ref|YP_004036107.1| - 1e-07 31.6 0.1 1.7e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313125837|ref|YP_004036107.1| - 0.00014 21.4 0.0 0.00023 20.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.5 gi|313125837|ref|YP_004036107.1| - 0.0029 17.2 0.0 0.005 16.5 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|313125837|ref|YP_004036107.1| - 0.0038 17.5 0.0 0.0063 16.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|313125837|ref|YP_004036107.1| - 0.0077 15.9 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|313125837|ref|YP_004036107.1| - 0.01 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|313125837|ref|YP_004036107.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|313125837|ref|YP_004036107.1| - 0.014 15.3 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|313125837|ref|YP_004036107.1| - 0.024 14.6 0.0 0.4 10.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|313125837|ref|YP_004036107.1| - 0.033 14.3 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_30 PF13556.1 gi|313125837|ref|YP_004036107.1| - 0.11 12.0 0.3 0.18 11.3 0.2 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MrpF_PhaF PF04066.8 gi|313125838|ref|YP_004036108.1| - 2.4 8.4 6.5 0.58 10.4 1.4 2.1 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) OrfB_IS605 PF01385.14 gi|313125839|ref|YP_004036109.1| - 8.1e-29 100.6 4.4 1.5e-28 99.7 3.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313125839|ref|YP_004036109.1| - 2.8e-18 65.3 0.1 6.2e-18 64.2 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|313125839|ref|YP_004036109.1| - 0.00072 18.8 0.5 0.0014 17.9 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L18p PF00861.17 gi|313125839|ref|YP_004036109.1| - 0.035 14.2 0.6 0.08 13.1 0.4 1.7 1 0 0 1 1 1 0 Ribosomal L18p/L5e family zf-ribbon_3 PF13248.1 gi|313125839|ref|YP_004036109.1| - 0.047 12.9 1.1 1 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|313125839|ref|YP_004036109.1| - 0.08 12.4 0.3 0.21 11.0 0.2 1.7 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribonuc_red_lgC PF02867.10 gi|313125840|ref|YP_004036110.1| - 8.7e-149 496.5 0.0 1.4e-148 495.8 0.0 1.3 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|313125840|ref|YP_004036110.1| - 5.1e-27 93.6 0.0 2e-26 91.7 0.0 2.2 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|313125840|ref|YP_004036110.1| - 3.9e-24 84.2 0.2 1.2e-23 82.6 0.1 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain Y_phosphatase3C PF13348.1 gi|313125840|ref|YP_004036110.1| - 0.029 14.4 0.1 0.23 11.5 0.0 2.6 2 0 0 2 2 2 0 Tyrosine phosphatase family C-terminal region RNA_POL_M_15KD PF02150.11 gi|313125840|ref|YP_004036110.1| - 0.35 10.6 6.1 0.71 9.6 4.2 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Fzo_mitofusin PF04799.8 gi|313125841|ref|YP_004036111.1| - 0.048 13.0 1.4 0.046 13.0 0.9 1.1 1 0 0 1 1 1 0 fzo-like conserved region PAP2 PF01569.16 gi|313125841|ref|YP_004036111.1| - 0.18 11.5 5.9 0.2 11.3 4.1 1.2 1 0 0 1 1 1 0 PAP2 superfamily GATase PF00117.23 gi|313125842|ref|YP_004036112.1| - 2.1e-46 157.8 0.0 2.3e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313125842|ref|YP_004036112.1| - 3.3e-08 33.2 0.1 5.9e-08 32.4 0.1 1.4 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|313125843|ref|YP_004036113.1| - 6.8e-89 297.5 0.0 1.2e-88 296.7 0.0 1.4 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|313125843|ref|YP_004036113.1| - 6.9e-22 77.9 0.1 6e-21 74.9 0.0 2.7 4 1 0 4 4 4 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|313125844|ref|YP_004036114.1| - 2e-39 135.2 0.5 2.2e-39 135.0 0.3 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.13 gi|313125844|ref|YP_004036114.1| - 0.0037 16.1 0.1 0.0063 15.3 0.1 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|313125844|ref|YP_004036114.1| - 0.0053 15.9 5.9 0.023 13.8 4.1 1.8 1 1 1 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|313125844|ref|YP_004036114.1| - 0.0062 15.6 0.5 0.023 13.8 0.2 2.0 1 1 1 2 2 2 1 Thiamine monophosphate synthase/TENI BtpA PF03437.10 gi|313125844|ref|YP_004036114.1| - 0.051 12.8 3.0 0.091 11.9 0.5 2.2 1 1 0 2 2 2 0 BtpA family Glycos_transf_3 PF00591.16 gi|313125845|ref|YP_004036115.1| - 1.5e-96 322.6 4.1 2.1e-96 322.2 2.8 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|313125845|ref|YP_004036115.1| - 6.8e-18 64.0 6.5 2e-17 62.5 1.3 2.4 2 0 0 2 2 2 2 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|313125845|ref|YP_004036115.1| - 0.014 14.8 0.0 0.047 13.1 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) ParB PF08775.5 gi|313125846|ref|YP_004036116.1| - 0.057 13.7 0.5 0.13 12.5 0.3 1.6 1 0 0 1 1 1 0 ParB family Anti-adapt_IraP PF10796.4 gi|313125846|ref|YP_004036116.1| - 0.41 11.0 2.1 0.53 10.6 0.6 1.8 2 0 0 2 2 2 0 Sigma-S stabilisation anti-adaptor protein HATPase_c PF02518.21 gi|313125850|ref|YP_004036120.1| - 2e-18 66.1 0.1 4e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313125850|ref|YP_004036120.1| - 2.8e-13 49.6 1.2 2.8e-13 49.6 0.8 3.2 4 0 0 4 4 4 2 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|313125850|ref|YP_004036120.1| - 7.8e-13 48.4 0.0 2.6e-12 46.7 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|313125850|ref|YP_004036120.1| - 1.1e-09 38.6 0.0 3.4e-09 37.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|313125850|ref|YP_004036120.1| - 1.4e-08 34.8 0.1 5.5e-08 32.9 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|313125850|ref|YP_004036120.1| - 1.6e-08 34.5 2.5 1.8e-08 34.4 0.2 2.2 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|313125850|ref|YP_004036120.1| - 3.2e-06 27.7 0.4 1.1e-05 25.9 0.0 2.2 3 0 0 3 3 2 1 GAF domain PAS_9 PF13426.1 gi|313125850|ref|YP_004036120.1| - 0.0031 17.8 0.0 0.0078 16.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|313125850|ref|YP_004036120.1| - 0.018 14.6 0.0 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|313125850|ref|YP_004036120.1| - 0.032 13.9 0.1 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 PAS fold Arb1 PF09692.5 gi|313125850|ref|YP_004036120.1| - 0.034 13.0 0.0 0.034 13.0 0.0 1.9 2 0 0 2 2 2 0 Argonaute siRNA chaperone (ARC) complex subunit Arb1 OKR_DC_1_N PF03709.10 gi|313125850|ref|YP_004036120.1| - 0.078 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain FUSC PF04632.7 gi|313125850|ref|YP_004036120.1| - 4.9 5.4 6.4 8.7 4.6 4.4 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family N6_N4_Mtase PF01555.13 gi|313125852|ref|YP_004036122.1| - 1.4e-33 116.3 0.0 1.9e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|313125852|ref|YP_004036122.1| - 6.2e-11 42.3 0.1 0.00018 21.5 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|313125852|ref|YP_004036122.1| - 0.0018 17.8 0.0 0.15 11.6 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|313125852|ref|YP_004036122.1| - 0.044 14.2 0.1 1.5 9.3 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain Amidohydro_1 PF01979.15 gi|313125853|ref|YP_004036123.1| - 2e-49 169.0 2.2 2.4e-49 168.7 1.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313125853|ref|YP_004036123.1| - 1.2e-15 58.2 1.1 2.4e-14 54.0 0.8 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|313125853|ref|YP_004036123.1| - 1.9e-05 24.4 0.2 1.9e-05 24.4 0.1 2.3 2 1 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|313125853|ref|YP_004036123.1| - 0.00036 19.5 0.2 0.0028 16.6 0.0 2.0 1 1 1 2 2 2 1 Adenosine/AMP deaminase zf-C2H2 PF00096.21 gi|313125855|ref|YP_004036125.1| - 0.0047 17.1 0.3 0.0075 16.5 0.2 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-dskA_traR PF01258.12 gi|313125855|ref|YP_004036125.1| - 0.018 14.7 0.1 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2HC_2 PF13913.1 gi|313125855|ref|YP_004036125.1| - 0.035 13.7 0.1 0.063 12.9 0.1 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-C2H2_6 PF13912.1 gi|313125855|ref|YP_004036125.1| - 0.11 12.4 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger DUF1201 PF06716.6 gi|313125855|ref|YP_004036125.1| - 0.11 12.2 3.8 0.19 11.5 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1201) DUF2116 PF09889.4 gi|313125855|ref|YP_004036125.1| - 0.15 11.9 0.3 14 5.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Rad50_zn_hook PF04423.9 gi|313125855|ref|YP_004036125.1| - 0.24 10.8 1.1 0.7 9.4 0.0 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif Iron_transport PF10634.4 gi|313125856|ref|YP_004036126.1| - 2.1e-06 27.7 0.0 8.6e-05 22.4 0.0 2.3 2 0 0 2 2 2 2 Fe2+ transport protein Glu-tRNAGln PF02686.10 gi|313125858|ref|YP_004036128.1| - 0.12 12.1 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit MCPsignal PF00015.16 gi|313125859|ref|YP_004036129.1| - 3.5e-52 177.0 54.8 2.3e-48 164.5 19.7 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313125859|ref|YP_004036129.1| - 9.5e-09 35.3 7.0 2.6e-08 33.9 1.1 5.8 6 1 0 6 6 6 2 HAMP domain Baculo_PEP_C PF04513.7 gi|313125859|ref|YP_004036129.1| - 0.00013 21.7 22.4 0.0096 15.7 3.0 4.2 1 1 3 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|313125859|ref|YP_004036129.1| - 0.0003 19.4 21.5 0.012 14.1 5.2 2.2 1 1 1 2 2 2 2 AAA domain DUF948 PF06103.6 gi|313125859|ref|YP_004036129.1| - 0.0029 17.4 21.9 0.032 14.0 1.8 5.5 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) IFT57 PF10498.4 gi|313125859|ref|YP_004036129.1| - 0.0064 15.2 16.5 0.011 14.4 1.2 2.9 1 1 0 3 3 3 2 Intra-flagellar transport protein 57 DUF1664 PF07889.7 gi|313125859|ref|YP_004036129.1| - 0.0078 16.0 2.7 0.0078 16.0 1.9 4.9 3 1 1 4 4 4 1 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|313125859|ref|YP_004036129.1| - 0.019 14.6 28.7 0.48 10.1 3.8 5.0 2 2 1 4 4 4 0 Laminin Domain II DUF1843 PF08898.5 gi|313125859|ref|YP_004036129.1| - 0.026 14.5 0.7 0.026 14.5 0.5 4.7 5 0 0 5 5 5 0 Domain of unknown function (DUF1843) Reo_sigmaC PF04582.7 gi|313125859|ref|YP_004036129.1| - 0.13 11.4 25.8 0.44 9.6 4.9 3.7 2 1 1 3 3 3 0 Reovirus sigma C capsid protein CorA PF01544.13 gi|313125859|ref|YP_004036129.1| - 0.18 10.8 15.4 0.45 9.5 3.3 3.5 3 0 0 3 3 3 0 CorA-like Mg2+ transporter protein BLOC1_2 PF10046.4 gi|313125859|ref|YP_004036129.1| - 0.47 10.6 24.8 0.76 9.9 2.1 5.1 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.5 gi|313125859|ref|YP_004036129.1| - 2.7 8.0 15.3 1.4 9.0 0.4 3.8 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family ING PF12998.2 gi|313125859|ref|YP_004036129.1| - 3.3 8.0 11.3 1.1 9.6 1.0 3.5 3 1 0 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Corona_S2 PF01601.11 gi|313125859|ref|YP_004036129.1| - 8.9 4.2 9.5 0.81 7.7 0.6 2.6 3 0 0 3 3 3 0 Coronavirus S2 glycoprotein DZR PF12773.2 gi|313125860|ref|YP_004036130.1| - 0.00038 20.2 0.9 0.00064 19.4 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|313125860|ref|YP_004036130.1| - 0.0016 17.8 0.6 0.0027 17.1 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313125860|ref|YP_004036130.1| - 0.0072 15.5 5.4 0.013 14.7 3.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|313125860|ref|YP_004036130.1| - 0.66 9.1 3.3 0.39 9.8 0.3 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others UPF0104 PF03706.8 gi|313125861|ref|YP_004036131.1| - 0.019 14.2 7.1 0.021 14.0 4.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF2427 PF10348.4 gi|313125861|ref|YP_004036131.1| - 0.076 12.6 0.4 0.081 12.5 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF2207 PF09972.4 gi|313125861|ref|YP_004036131.1| - 0.11 11.0 1.0 0.11 11.0 0.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1469 PF07332.6 gi|313125861|ref|YP_004036131.1| - 0.67 9.6 6.1 0.77 9.4 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3302 PF11742.3 gi|313125861|ref|YP_004036131.1| - 3.4 7.5 5.6 0.99 9.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3302) DUF1049 PF06305.6 gi|313125861|ref|YP_004036131.1| - 5.7 6.5 7.2 1.5 8.3 3.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) CoA_binding PF02629.14 gi|313125862|ref|YP_004036132.1| - 1.8e-24 86.0 3.8 1.8e-24 86.0 0.8 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|313125862|ref|YP_004036132.1| - 8.5e-13 48.1 1.1 1.9e-12 47.0 0.8 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|313125862|ref|YP_004036132.1| - 1.6e-08 34.2 0.0 2.4e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|313125862|ref|YP_004036132.1| - 3.1e-08 33.7 0.1 6.9e-06 26.2 0.1 2.2 2 0 0 2 2 2 2 CoA binding domain GFO_IDH_MocA PF01408.17 gi|313125862|ref|YP_004036132.1| - 0.043 14.3 0.2 0.19 12.2 0.1 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold PcrB PF01884.12 gi|313125862|ref|YP_004036132.1| - 0.045 13.0 0.0 0.1 11.8 0.0 1.6 1 0 0 1 1 1 0 PcrB family ATP-grasp_2 PF08442.5 gi|313125863|ref|YP_004036133.1| - 6.2e-67 224.9 1.0 1.1e-66 224.1 0.7 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|313125863|ref|YP_004036133.1| - 2.5e-19 69.3 7.8 7.9e-19 67.7 3.2 2.6 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|313125863|ref|YP_004036133.1| - 1.8e-13 50.3 1.5 5.1e-13 48.8 1.1 1.7 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|313125863|ref|YP_004036133.1| - 1.1e-10 41.1 3.5 2.6e-09 36.7 0.5 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|313125863|ref|YP_004036133.1| - 2.9e-09 36.9 0.5 5.7e-09 35.9 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|313125863|ref|YP_004036133.1| - 1e-08 34.6 0.2 2e-08 33.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|313125863|ref|YP_004036133.1| - 2e-07 30.7 0.3 2e-07 30.7 0.2 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_Ter PF15632.1 gi|313125863|ref|YP_004036133.1| - 0.0065 15.2 0.0 0.013 14.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|313125863|ref|YP_004036133.1| - 0.035 13.5 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|313125863|ref|YP_004036133.1| - 0.099 12.0 3.2 0.062 12.6 0.1 2.2 2 1 0 2 2 2 0 D-ala D-ala ligase C-terminus TF_Zn_Ribbon PF08271.7 gi|313125864|ref|YP_004036134.1| - 0.00096 18.4 4.0 0.095 12.0 0.4 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DUF35_N PF12172.3 gi|313125864|ref|YP_004036134.1| - 0.0019 18.0 2.6 0.11 12.4 0.1 2.3 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|313125864|ref|YP_004036134.1| - 0.002 18.0 0.5 0.41 10.6 0.0 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Rubredoxin PF00301.15 gi|313125864|ref|YP_004036134.1| - 0.0055 16.5 0.8 2.7 7.9 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin zf-Mss51 PF13824.1 gi|313125864|ref|YP_004036134.1| - 0.01 15.7 0.9 0.054 13.3 0.6 1.9 1 1 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 C1_3 PF07649.7 gi|313125864|ref|YP_004036134.1| - 0.011 15.7 1.4 0.68 10.0 0.0 2.3 2 0 0 2 2 2 0 C1-like domain Zn_Tnp_IS1595 PF12760.2 gi|313125864|ref|YP_004036134.1| - 0.018 14.8 0.2 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|313125864|ref|YP_004036134.1| - 0.019 14.6 0.3 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.1 gi|313125864|ref|YP_004036134.1| - 0.024 13.8 2.1 0.15 11.2 1.4 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|313125864|ref|YP_004036134.1| - 0.036 13.7 3.1 2.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|313125864|ref|YP_004036134.1| - 0.074 13.1 1.8 0.074 13.1 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|313125864|ref|YP_004036134.1| - 0.08 12.1 0.7 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|313125864|ref|YP_004036134.1| - 0.1 12.6 0.6 7 6.7 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|313125864|ref|YP_004036134.1| - 0.11 12.0 3.3 5.6 6.5 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|313125864|ref|YP_004036134.1| - 0.2 11.1 0.3 0.2 11.1 0.2 2.2 2 1 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|313125864|ref|YP_004036134.1| - 0.22 11.5 1.3 8.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|313125864|ref|YP_004036134.1| - 0.24 11.7 1.9 1.7 8.9 1.3 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2 PF00096.21 gi|313125864|ref|YP_004036134.1| - 0.31 11.4 2.1 7.4 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type PhnA_Zn_Ribbon PF08274.7 gi|313125864|ref|YP_004036134.1| - 0.46 10.3 2.8 2.3 8.0 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ADH_zinc_N_2 PF13602.1 gi|313125865|ref|YP_004036135.1| - 3.5e-15 57.0 0.3 7e-15 56.0 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|313125865|ref|YP_004036135.1| - 2.6e-14 52.8 0.0 4.8e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313125865|ref|YP_004036135.1| - 1.9e-11 43.6 0.1 2.1e-10 40.2 0.0 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain NIF3 PF01784.13 gi|313125865|ref|YP_004036135.1| - 0.0056 16.2 0.0 0.007 15.9 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) adh_short PF00106.20 gi|313125865|ref|YP_004036135.1| - 0.039 13.8 0.0 0.094 12.6 0.0 1.7 1 0 0 1 1 1 0 short chain dehydrogenase DUF2493 PF10686.4 gi|313125865|ref|YP_004036135.1| - 0.052 13.0 0.1 0.1 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) adh_short PF00106.20 gi|313125866|ref|YP_004036136.1| - 1e-21 77.5 1.2 1.5e-21 77.0 0.8 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313125866|ref|YP_004036136.1| - 1e-17 64.7 0.0 5.4e-17 62.3 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|313125866|ref|YP_004036136.1| - 7.8e-07 28.7 0.1 1e-06 28.3 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|313125866|ref|YP_004036136.1| - 9.8e-07 28.6 0.9 1.6e-06 27.8 0.6 1.3 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|313125866|ref|YP_004036136.1| - 0.074 12.2 0.1 0.18 11.0 0.1 1.7 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.1 gi|313125866|ref|YP_004036136.1| - 0.12 12.3 2.4 0.2 11.6 1.7 1.5 1 1 0 1 1 1 0 NADH(P)-binding SNF PF00209.13 gi|313125867|ref|YP_004036137.1| - 3e-48 164.5 28.6 4.5e-25 88.1 9.9 2.7 2 1 0 2 2 2 2 Sodium:neurotransmitter symporter family SNF PF00209.13 gi|313125868|ref|YP_004036138.1| - 5.2e-40 137.4 32.9 9.8e-21 73.8 8.5 2.7 2 1 0 3 3 3 2 Sodium:neurotransmitter symporter family Carboxyl_trans PF01039.17 gi|313125870|ref|YP_004036140.1| - 3.6e-205 681.9 0.0 4.1e-205 681.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|313125870|ref|YP_004036140.1| - 0.00076 18.7 0.0 0.0022 17.2 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) GT36_AF PF06205.6 gi|313125871|ref|YP_004036141.1| - 0.0036 16.9 0.1 0.0053 16.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase 36 associated family OAD_gamma PF04277.8 gi|313125871|ref|YP_004036141.1| - 0.78 10.1 6.9 0.38 11.1 3.5 1.5 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain ACC_epsilon PF13822.1 gi|313125871|ref|YP_004036141.1| - 3.9 7.9 19.3 0.5 10.7 8.0 2.1 1 1 1 2 2 2 0 Acyl-CoA carboxylase epsilon subunit Ribosomal_S17e PF00833.13 gi|313125873|ref|YP_004036143.1| - 2.6e-14 53.0 0.2 3.3e-14 52.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF447 PF04289.7 gi|313125874|ref|YP_004036144.1| - 1.9e-41 141.5 0.0 2.2e-41 141.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.11 gi|313125875|ref|YP_004036145.1| - 6.2e-59 199.4 1.5 7.3e-59 199.2 1.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.12 gi|313125876|ref|YP_004036146.1| - 7.8e-06 24.9 2.4 0.00013 20.8 1.6 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Radical_SAM PF04055.16 gi|313125876|ref|YP_004036146.1| - 0.12 12.4 0.1 4.1 7.5 0.0 2.5 1 1 1 2 2 2 0 Radical SAM superfamily UPF0052 PF01933.13 gi|313125877|ref|YP_004036147.1| - 7.3e-42 143.7 0.0 1e-41 143.2 0.0 1.2 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 HD PF01966.17 gi|313125879|ref|YP_004036149.1| - 3.1e-11 43.3 4.4 7.3e-11 42.1 3.0 1.7 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|313125880|ref|YP_004036150.1| - 3.2e-11 43.2 0.8 8e-11 42.0 0.5 1.7 1 0 0 1 1 1 1 HD domain Amidohydro_1 PF01979.15 gi|313125881|ref|YP_004036151.1| - 3.8e-23 82.6 0.0 2.8e-16 60.0 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313125881|ref|YP_004036151.1| - 2e-10 41.2 6.3 1.2e-09 38.6 4.4 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|313125881|ref|YP_004036151.1| - 2.5e-07 30.3 0.0 4.7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|313125881|ref|YP_004036151.1| - 1.2e-06 27.7 0.0 1.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Usp PF00582.21 gi|313125881|ref|YP_004036151.1| - 0.045 13.9 1.4 0.22 11.7 0.2 2.4 1 1 0 2 2 2 0 Universal stress protein family Amidohydro_3 PF07969.6 gi|313125881|ref|YP_004036151.1| - 0.051 12.7 7.7 0.28 10.3 1.6 2.8 1 1 1 2 2 2 0 Amidohydrolase family Usp PF00582.21 gi|313125882|ref|YP_004036152.1| - 3.5e-42 143.9 1.2 5.6e-42 143.2 0.9 1.3 1 0 0 1 1 1 1 Universal stress protein family NESP55 PF06390.7 gi|313125882|ref|YP_004036152.1| - 0.57 9.5 3.2 0.83 8.9 2.2 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) BPL_LplA_LipB PF03099.14 gi|313125883|ref|YP_004036153.1| - 1.1e-19 70.7 0.0 1.7e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|313125883|ref|YP_004036153.1| - 4.4e-12 45.4 0.0 9.4e-12 44.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|313125883|ref|YP_004036153.1| - 4.7e-08 32.5 0.2 9.6e-08 31.5 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|313125883|ref|YP_004036153.1| - 4.9e-06 25.8 0.0 8.4e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313125883|ref|YP_004036153.1| - 0.00042 20.0 0.0 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|313125883|ref|YP_004036153.1| - 0.00059 19.3 0.8 0.0014 18.1 0.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|313125883|ref|YP_004036153.1| - 0.01 15.4 0.0 0.029 14.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|313125883|ref|YP_004036153.1| - 0.019 14.6 0.1 0.067 12.8 0.0 1.9 2 0 0 2 2 2 0 MarR family Peripla_BP_3 PF13377.1 gi|313125883|ref|YP_004036153.1| - 0.027 14.4 1.1 0.13 12.2 0.3 2.2 1 1 1 2 2 2 0 Periplasmic binding protein-like domain HTH_1 PF00126.22 gi|313125883|ref|YP_004036153.1| - 0.029 14.1 0.9 0.34 10.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2685 PF10886.3 gi|313125883|ref|YP_004036153.1| - 0.082 12.9 0.5 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2685) Mac PF12464.3 gi|313125884|ref|YP_004036154.1| - 4.7e-21 74.5 0.6 2.9e-20 72.0 0.4 1.9 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|313125884|ref|YP_004036154.1| - 3.3e-12 45.3 6.2 1.2e-09 37.1 1.6 3.4 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313125884|ref|YP_004036154.1| - 2.9e-11 42.7 9.3 9.7e-11 41.0 1.1 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase CPSase_L_D2 PF02786.12 gi|313125885|ref|YP_004036155.1| - 4.3e-77 258.1 0.4 6.8e-77 257.5 0.2 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|313125885|ref|YP_004036155.1| - 5.1e-43 145.6 1.0 1.5e-42 144.1 0.2 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|313125885|ref|YP_004036155.1| - 3e-33 113.9 0.0 7.8e-33 112.6 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|313125885|ref|YP_004036155.1| - 2.2e-19 69.8 0.7 6e-19 68.4 0.5 1.7 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl PF00364.17 gi|313125885|ref|YP_004036155.1| - 1.9e-18 65.8 6.0 8.5e-18 63.7 4.1 2.2 1 0 0 1 1 1 1 Biotin-requiring enzyme ATPgrasp_Ter PF15632.1 gi|313125885|ref|YP_004036155.1| - 1.8e-15 56.5 0.2 7.8e-15 54.4 0.1 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|313125885|ref|YP_004036155.1| - 3.5e-11 42.8 0.0 7.3e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|313125885|ref|YP_004036155.1| - 9e-10 38.1 0.2 1.9e-09 37.0 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|313125885|ref|YP_004036155.1| - 1.3e-08 34.3 3.1 0.00037 20.0 0.1 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like RimK PF08443.6 gi|313125885|ref|YP_004036155.1| - 7.9e-06 25.4 0.0 0.0033 16.9 0.0 2.4 2 0 0 2 2 2 2 RimK-like ATP-grasp domain HlyD_2 PF12700.2 gi|313125885|ref|YP_004036155.1| - 1.8e-05 24.0 2.6 0.0033 16.6 0.1 2.4 1 1 1 2 2 2 2 HlyD family secretion protein GARS_A PF01071.14 gi|313125885|ref|YP_004036155.1| - 4.1e-05 23.2 0.1 8.2e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|313125885|ref|YP_004036155.1| - 5.2e-05 23.1 0.0 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|313125885|ref|YP_004036155.1| - 0.0023 17.2 0.1 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain HlyD_3 PF13437.1 gi|313125885|ref|YP_004036155.1| - 0.011 16.0 0.6 1.3 9.3 0.0 2.9 2 0 0 2 2 2 0 HlyD family secretion protein HlyD PF00529.15 gi|313125885|ref|YP_004036155.1| - 0.013 14.8 8.8 0.09 12.0 0.5 3.1 3 1 1 4 4 4 0 HlyD family secretion protein GCV_H PF01597.14 gi|313125885|ref|YP_004036155.1| - 0.029 14.0 4.6 0.037 13.7 1.2 2.3 2 0 0 2 2 2 0 Glycine cleavage H-protein CoA_binding_2 PF13380.1 gi|313125885|ref|YP_004036155.1| - 0.052 13.7 0.7 0.19 11.9 0.1 2.2 1 1 1 2 2 2 0 CoA binding domain DUF4019 PF13211.1 gi|313125885|ref|YP_004036155.1| - 0.076 13.2 0.3 0.22 11.8 0.1 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF4019) Psu PF07455.6 gi|313125885|ref|YP_004036155.1| - 0.079 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Phage polarity suppression protein (Psu) Semialdhyde_dh PF01118.19 gi|313125886|ref|YP_004036156.1| - 2e-33 115.2 0.0 4.6e-33 114.0 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|313125886|ref|YP_004036156.1| - 1.4e-30 106.5 0.0 2e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|313125886|ref|YP_004036156.1| - 0.00016 21.6 0.0 0.00035 20.4 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DUF1416 PF07210.7 gi|313125886|ref|YP_004036156.1| - 0.00097 18.7 0.1 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) DXP_reductoisom PF02670.11 gi|313125886|ref|YP_004036156.1| - 0.0012 19.3 0.0 0.0024 18.4 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|313125886|ref|YP_004036156.1| - 0.028 14.9 0.0 0.054 14.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|313125886|ref|YP_004036156.1| - 0.063 12.7 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|313125887|ref|YP_004036157.1| - 2e-53 180.2 0.0 2.8e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|313125887|ref|YP_004036157.1| - 4e-13 48.9 0.0 4.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|313125887|ref|YP_004036157.1| - 0.0038 17.6 0.0 0.011 16.0 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|313125887|ref|YP_004036157.1| - 0.022 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|313125887|ref|YP_004036157.1| - 0.083 12.2 0.0 0.33 10.2 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|313125887|ref|YP_004036157.1| - 0.087 12.6 0.7 0.19 11.5 0.1 1.8 2 0 0 2 2 2 0 ThiF family Repressor_Mnt PF11423.3 gi|313125887|ref|YP_004036157.1| - 0.094 12.0 0.1 0.18 11.1 0.1 1.4 1 0 0 1 1 1 0 Regulatory protein Mnt DAO PF01266.19 gi|313125888|ref|YP_004036158.1| - 4.3e-14 52.2 2.0 3e-06 26.3 0.0 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|313125888|ref|YP_004036158.1| - 1.5e-08 34.0 2.1 1.3e-07 31.0 1.4 2.0 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|313125888|ref|YP_004036158.1| - 2.3e-08 33.1 3.6 1.9e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|313125888|ref|YP_004036158.1| - 8.1e-08 31.1 0.9 0.0011 17.5 1.5 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|313125888|ref|YP_004036158.1| - 7.2e-07 29.2 0.7 6.2e-06 26.2 0.5 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|313125888|ref|YP_004036158.1| - 4.7e-06 25.7 1.0 0.028 13.3 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|313125888|ref|YP_004036158.1| - 7.8e-06 24.9 2.7 1.4e-05 24.1 1.9 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|313125888|ref|YP_004036158.1| - 5.6e-05 22.9 2.2 0.0015 18.3 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|313125888|ref|YP_004036158.1| - 6.4e-05 21.9 2.0 0.00052 18.9 0.7 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313125888|ref|YP_004036158.1| - 0.00016 20.8 7.2 0.00016 20.8 5.0 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313125888|ref|YP_004036158.1| - 0.00047 20.1 2.3 0.00081 19.3 0.6 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|313125888|ref|YP_004036158.1| - 0.0026 17.8 1.0 0.34 10.9 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313125888|ref|YP_004036158.1| - 0.01 14.9 0.2 0.018 14.1 0.1 1.4 1 0 0 1 1 1 0 Thi4 family NAD_binding_7 PF13241.1 gi|313125888|ref|YP_004036158.1| - 0.11 12.8 0.0 0.21 11.8 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|313125888|ref|YP_004036158.1| - 0.11 11.3 0.2 0.4 9.5 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|313125888|ref|YP_004036158.1| - 0.14 11.6 0.1 0.25 10.8 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Adeno_knob PF00541.12 gi|313125888|ref|YP_004036158.1| - 0.19 11.3 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 Adenoviral fibre protein (knob domain) Usp PF00582.21 gi|313125889|ref|YP_004036159.1| - 4.9e-62 208.2 4.7 5.9e-32 110.7 0.2 2.0 2 0 0 2 2 2 2 Universal stress protein family MGS PF02142.17 gi|313125889|ref|YP_004036159.1| - 4.3e-05 23.3 0.0 0.37 10.7 0.1 2.4 2 0 0 2 2 2 2 MGS-like domain GARS_N PF02844.10 gi|313125889|ref|YP_004036159.1| - 0.0018 18.6 0.0 0.14 12.6 0.0 2.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GTP-bdg_N PF13167.1 gi|313125889|ref|YP_004036159.1| - 0.0059 16.7 0.1 2.6 8.2 0.1 2.5 2 0 0 2 2 2 2 GTP-binding GTPase N-terminal Dala_Dala_lig_N PF01820.16 gi|313125889|ref|YP_004036159.1| - 0.021 15.1 0.1 8.2 6.7 0.0 2.2 2 0 0 2 2 2 0 D-ala D-ala ligase N-terminus FR47 PF08445.5 gi|313125889|ref|YP_004036159.1| - 0.022 14.5 0.0 0.35 10.6 0.0 2.3 2 0 0 2 2 2 0 FR47-like protein DUF399 PF04187.8 gi|313125889|ref|YP_004036159.1| - 0.037 13.5 0.3 0.32 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF399 FAD_binding_3 PF01494.14 gi|313125890|ref|YP_004036160.1| - 7.9e-22 77.7 2.6 4.5e-21 75.3 1.8 2.1 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|313125890|ref|YP_004036160.1| - 3.4e-08 32.7 2.8 4.9e-06 25.7 0.1 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|313125890|ref|YP_004036160.1| - 3.5e-08 32.7 1.3 8.3e-07 28.2 0.2 2.2 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313125890|ref|YP_004036160.1| - 1.3e-06 28.3 0.1 5.2e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|313125890|ref|YP_004036160.1| - 2.3e-06 27.8 0.0 0.00011 22.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313125890|ref|YP_004036160.1| - 7.9e-06 24.9 0.4 2.3e-05 23.4 0.0 1.9 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|313125890|ref|YP_004036160.1| - 5.6e-05 23.1 0.0 9.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|313125890|ref|YP_004036160.1| - 0.00021 20.4 0.0 0.09 11.8 0.0 2.3 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Trp_halogenase PF04820.9 gi|313125890|ref|YP_004036160.1| - 0.0057 15.3 0.0 0.085 11.4 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|313125890|ref|YP_004036160.1| - 0.019 14.7 0.4 5.1 6.8 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.12 gi|313125890|ref|YP_004036160.1| - 0.02 14.0 0.0 0.044 12.8 0.0 1.5 2 0 0 2 2 2 0 Thi4 family Pyr_redox_3 PF13738.1 gi|313125890|ref|YP_004036160.1| - 0.021 14.9 0.1 0.059 13.4 0.0 1.9 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|313125890|ref|YP_004036160.1| - 0.14 10.9 0.1 0.53 9.0 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase HI0933_like PF03486.9 gi|313125890|ref|YP_004036160.1| - 0.16 10.3 0.0 0.24 9.8 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Aminotran_5 PF00266.14 gi|313125891|ref|YP_004036161.1| - 6.7e-32 110.6 0.0 8.4e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|313125891|ref|YP_004036161.1| - 0.019 14.1 0.0 0.11 11.6 0.0 2.0 1 1 0 1 1 1 0 Beta-eliminating lyase LYTB PF02401.13 gi|313125891|ref|YP_004036161.1| - 0.094 11.6 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 LytB protein AICARFT_IMPCHas PF01808.13 gi|313125891|ref|YP_004036161.1| - 0.12 11.4 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 AICARFT/IMPCHase bienzyme HTH_10 PF04967.7 gi|313125892|ref|YP_004036162.1| - 2.1e-14 52.8 0.0 5.1e-14 51.5 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain RRM_6 PF14259.1 gi|313125892|ref|YP_004036162.1| - 0.013 15.4 0.0 2.9 7.9 0.0 2.4 2 0 0 2 2 2 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Abhydrolase_6 PF12697.2 gi|313125893|ref|YP_004036163.1| - 5e-27 95.2 7.9 6.3e-27 94.9 5.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313125893|ref|YP_004036163.1| - 7.3e-16 58.2 1.0 6.4e-15 55.1 0.7 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313125893|ref|YP_004036163.1| - 5.5e-14 52.2 0.5 1.7e-13 50.7 0.4 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.15 gi|313125893|ref|YP_004036163.1| - 0.0019 17.6 1.0 0.0027 17.1 0.7 1.4 1 1 0 1 1 1 1 Putative esterase DUF1057 PF06342.7 gi|313125893|ref|YP_004036163.1| - 0.0085 14.9 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) DLH PF01738.13 gi|313125893|ref|YP_004036163.1| - 0.017 14.3 0.0 1.5 8.0 0.0 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF2048 PF09752.4 gi|313125893|ref|YP_004036163.1| - 0.024 13.5 0.1 3.7 6.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Abhydrolase_4 PF08386.5 gi|313125893|ref|YP_004036163.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein CSD PF00313.17 gi|313125894|ref|YP_004036164.1| - 2e-19 69.1 0.1 2.1e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|313125894|ref|YP_004036164.1| - 0.036 13.5 3.3 0.052 13.0 2.3 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.1 gi|313125894|ref|YP_004036164.1| - 0.048 13.3 0.4 0.066 12.9 0.2 1.3 1 1 0 1 1 1 0 S1-like Pyr_redox_2 PF07992.9 gi|313125895|ref|YP_004036165.1| - 9.5e-06 25.6 0.0 1.5e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313125895|ref|YP_004036165.1| - 3.2e-05 23.8 0.1 7.3e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313125895|ref|YP_004036165.1| - 0.00025 20.0 0.7 0.0043 16.0 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|313125895|ref|YP_004036165.1| - 0.026 14.9 0.3 0.48 10.8 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313125895|ref|YP_004036165.1| - 0.063 12.1 0.7 0.11 11.3 0.5 1.6 1 1 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|313125895|ref|YP_004036165.1| - 0.064 13.3 0.3 0.15 12.0 0.2 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313125895|ref|YP_004036165.1| - 0.099 11.4 0.9 0.2 10.4 0.6 1.5 1 0 0 1 1 1 0 FAD binding domain HCV_NS4a PF01006.15 gi|313125895|ref|YP_004036165.1| - 0.42 10.1 4.3 1.4 8.4 3.0 1.9 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Exo_endo_phos PF03372.18 gi|313125896|ref|YP_004036166.1| - 1.8e-17 64.1 3.2 4e-17 62.9 2.2 1.5 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|313125896|ref|YP_004036166.1| - 7.1e-05 22.3 0.0 0.00013 21.5 0.0 1.5 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase CRAM_rpt PF07016.6 gi|313125896|ref|YP_004036166.1| - 0.16 11.3 1.7 5.3 6.4 0.2 2.7 2 0 0 2 2 2 0 Cysteine-rich acidic integral membrane protein precursor Histidinol_dh PF00815.15 gi|313125897|ref|YP_004036167.1| - 6.3e-147 489.5 7.7 1.8e-146 488.0 5.3 1.6 1 1 0 1 1 1 1 Histidinol dehydrogenase SIP PF04954.8 gi|313125897|ref|YP_004036167.1| - 0.16 12.3 1.8 0.38 11.1 1.2 1.7 1 0 0 1 1 1 0 Siderophore-interacting protein Methyltransf_18 PF12847.2 gi|313125898|ref|YP_004036168.1| - 1.3e-09 38.5 0.0 2.5e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125898|ref|YP_004036168.1| - 2.6e-09 37.0 0.0 5e-09 36.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313125898|ref|YP_004036168.1| - 3e-08 34.0 0.0 5.6e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313125898|ref|YP_004036168.1| - 2.8e-06 26.9 0.0 1e-05 25.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125898|ref|YP_004036168.1| - 1.8e-05 25.1 0.0 5.4e-05 23.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125898|ref|YP_004036168.1| - 2.5e-05 24.5 0.1 5.9e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313125898|ref|YP_004036168.1| - 7.3e-05 22.7 1.6 0.00013 21.9 0.4 1.9 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|313125898|ref|YP_004036168.1| - 0.00018 20.9 0.0 0.00041 19.7 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW LCM PF04072.9 gi|313125898|ref|YP_004036168.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Leucine carboxyl methyltransferase MTS PF05175.9 gi|313125898|ref|YP_004036168.1| - 0.049 13.0 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain FtsJ PF01728.14 gi|313125898|ref|YP_004036168.1| - 0.084 12.8 0.0 0.92 9.4 0.0 2.1 1 1 1 2 2 2 0 FtsJ-like methyltransferase CMAS PF02353.15 gi|313125898|ref|YP_004036168.1| - 0.11 11.5 0.0 2 7.3 0.0 2.0 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Fe-S_biosyn PF01521.15 gi|313125899|ref|YP_004036169.1| - 1.4e-18 66.8 0.0 1.6e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis RecR PF02132.10 gi|313125900|ref|YP_004036170.1| - 8 5.9 6.0 2.2 7.7 0.4 2.1 1 1 1 2 2 2 0 RecR protein Sterol_MT_C PF08498.5 gi|313125902|ref|YP_004036172.1| - 0.02 14.8 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal ATPase_gene1 PF09527.5 gi|313125902|ref|YP_004036172.1| - 0.97 9.2 0.1 0.97 9.2 0.0 3.8 4 0 0 4 4 4 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF2238 PF09997.4 gi|313125903|ref|YP_004036173.1| - 0.004 16.5 1.5 0.0048 16.3 0.1 1.8 2 1 0 2 2 2 1 Predicted membrane protein (DUF2238) DUF983 PF06170.7 gi|313125903|ref|YP_004036173.1| - 0.47 10.5 4.0 19 5.4 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF983) Dodecin PF07311.7 gi|313125904|ref|YP_004036174.1| - 2.1e-24 85.2 1.2 2.3e-24 85.1 0.8 1.0 1 0 0 1 1 1 1 Dodecin 5_nucleotid_C PF02872.13 gi|313125905|ref|YP_004036175.1| - 5.8e-29 101.0 0.0 9.9e-29 100.3 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|313125905|ref|YP_004036175.1| - 3.8e-06 26.4 0.1 7.8e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|313125905|ref|YP_004036175.1| - 0.004 17.0 1.4 0.015 15.1 0.9 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF3391 PF11871.3 gi|313125905|ref|YP_004036175.1| - 0.13 12.5 0.0 0.32 11.2 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Usp PF00582.21 gi|313125906|ref|YP_004036176.1| - 2.3e-13 50.5 0.8 3.3e-13 50.0 0.5 1.3 1 0 0 1 1 1 1 Universal stress protein family MS_channel PF00924.13 gi|313125907|ref|YP_004036177.1| - 9.1e-35 119.8 0.0 1.2e-34 119.4 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel HemY_N PF07219.8 gi|313125907|ref|YP_004036177.1| - 0.68 9.5 4.0 1.3 8.5 0.0 2.7 2 1 0 3 3 3 0 HemY protein N-terminus Regulator_TrmB PF11495.3 gi|313125908|ref|YP_004036178.1| - 1.2e-72 243.6 0.5 2e-72 242.9 0.4 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|313125908|ref|YP_004036178.1| - 1.8e-21 75.5 0.0 4e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313125908|ref|YP_004036178.1| - 4.3e-07 29.6 0.0 1.2e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313125908|ref|YP_004036178.1| - 6.7e-07 28.8 0.0 1.8e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313125908|ref|YP_004036178.1| - 3.3e-05 23.3 0.0 8e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313125908|ref|YP_004036178.1| - 0.00014 21.1 0.0 0.00045 19.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313125908|ref|YP_004036178.1| - 0.00044 19.8 0.0 0.0016 18.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|313125908|ref|YP_004036178.1| - 0.0018 18.3 0.0 0.0041 17.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_CodY PF08222.6 gi|313125908|ref|YP_004036178.1| - 0.0033 16.7 0.0 0.012 14.9 0.0 2.0 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF2250 PF10007.4 gi|313125908|ref|YP_004036178.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4 PF04545.11 gi|313125908|ref|YP_004036178.1| - 0.034 13.4 0.0 0.34 10.2 0.0 2.6 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|313125908|ref|YP_004036178.1| - 0.052 13.8 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|313125908|ref|YP_004036178.1| - 0.072 12.9 0.0 0.38 10.6 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.17 gi|313125908|ref|YP_004036178.1| - 0.093 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 MarR family BssS PF13991.1 gi|313125908|ref|YP_004036178.1| - 0.11 12.2 0.0 0.35 10.6 0.0 1.8 1 0 0 1 1 1 0 BssS protein family Phage_rep_org_N PF09681.5 gi|313125908|ref|YP_004036178.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Nudix_N_2 PF14803.1 gi|313125909|ref|YP_004036179.1| - 0.28 10.8 4.4 8.9 6.0 0.4 2.5 1 1 1 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|313125909|ref|YP_004036179.1| - 0.39 10.2 4.9 0.63 9.6 1.2 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NMD3 PF04981.8 gi|313125909|ref|YP_004036179.1| - 0.45 9.5 1.9 0.63 9.1 1.3 1.1 1 0 0 1 1 1 0 NMD3 family Lar_restr_allev PF14354.1 gi|313125909|ref|YP_004036179.1| - 1.5 9.1 6.0 3.7 7.9 4.1 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|313125909|ref|YP_004036179.1| - 3 7.2 11.7 3.5 7.0 5.4 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding GFO_IDH_MocA PF01408.17 gi|313125910|ref|YP_004036180.1| - 2.7e-27 95.6 0.3 6.5e-27 94.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313125910|ref|YP_004036180.1| - 2.7e-09 36.8 0.2 5.8e-08 32.5 0.0 2.3 1 1 1 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|313125910|ref|YP_004036180.1| - 6.6e-05 22.1 0.0 0.00018 20.7 0.0 1.7 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|313125910|ref|YP_004036180.1| - 0.0004 20.7 0.0 0.0011 19.4 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.14 gi|313125910|ref|YP_004036180.1| - 0.0012 19.2 0.1 0.0096 16.4 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain NAD_binding_2 PF03446.10 gi|313125910|ref|YP_004036180.1| - 0.0015 18.3 0.1 0.0041 16.9 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|313125910|ref|YP_004036180.1| - 0.01 16.1 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain HH_signal PF01085.13 gi|313125910|ref|YP_004036180.1| - 0.028 13.9 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 Hedgehog amino-terminal signalling domain IlvN PF07991.7 gi|313125910|ref|YP_004036180.1| - 0.062 12.6 0.1 0.14 11.4 0.0 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain YMF19 PF02326.10 gi|313125911|ref|YP_004036181.1| - 0.011 16.3 0.0 0.012 16.1 0.0 1.1 1 0 0 1 1 1 0 Plant ATP synthase F0 ABC_tran PF00005.22 gi|313125912|ref|YP_004036182.1| - 2.2e-34 118.7 0.0 4e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313125912|ref|YP_004036182.1| - 1.4e-10 41.6 0.0 2.4e-06 27.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313125912|ref|YP_004036182.1| - 1.5e-06 27.5 0.2 1e-05 24.8 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|313125912|ref|YP_004036182.1| - 0.00011 21.3 0.0 0.0029 16.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|313125912|ref|YP_004036182.1| - 0.00024 21.1 0.1 2 8.6 0.0 3.7 2 1 0 2 2 2 1 TOBE domain AAA_29 PF13555.1 gi|313125912|ref|YP_004036182.1| - 0.00052 19.4 0.0 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|313125912|ref|YP_004036182.1| - 0.0014 17.4 0.0 0.0018 17.0 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|313125912|ref|YP_004036182.1| - 0.0022 18.0 0.1 0.0062 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|313125912|ref|YP_004036182.1| - 0.003 18.3 0.2 0.011 16.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313125912|ref|YP_004036182.1| - 0.0032 16.9 0.0 0.033 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|313125912|ref|YP_004036182.1| - 0.004 17.3 0.8 0.032 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|313125912|ref|YP_004036182.1| - 0.0045 16.1 0.0 0.0083 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|313125912|ref|YP_004036182.1| - 0.0052 16.5 0.1 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313125912|ref|YP_004036182.1| - 0.009 16.2 0.3 0.065 13.4 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|313125912|ref|YP_004036182.1| - 0.0093 16.1 0.0 0.077 13.1 0.0 2.3 2 0 0 2 2 2 1 RNA helicase TOBE_2 PF08402.5 gi|313125912|ref|YP_004036182.1| - 0.01 15.7 0.2 1.5 8.8 0.0 3.3 1 1 0 2 2 2 0 TOBE domain AAA_33 PF13671.1 gi|313125912|ref|YP_004036182.1| - 0.025 14.4 0.4 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|313125912|ref|YP_004036182.1| - 0.027 14.7 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313125912|ref|YP_004036182.1| - 0.03 13.7 0.2 0.062 12.7 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|313125912|ref|YP_004036182.1| - 0.063 12.8 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain MltA PF03562.12 gi|313125912|ref|YP_004036182.1| - 0.084 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 MltA specific insert domain AAA_14 PF13173.1 gi|313125912|ref|YP_004036182.1| - 0.13 12.1 0.0 0.74 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|313125912|ref|YP_004036182.1| - 0.14 12.1 1.1 0.28 11.1 0.1 2.0 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|313125912|ref|YP_004036182.1| - 0.17 12.2 0.7 1.3 9.3 0.2 2.5 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|313125913|ref|YP_004036183.1| - 1.7e-10 40.7 19.9 1.7e-10 40.7 13.8 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313125914|ref|YP_004036184.1| - 1.5e-18 66.9 17.8 1.5e-18 66.9 12.3 2.4 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|313125915|ref|YP_004036185.1| - 9.6e-15 55.0 0.5 2e-14 54.0 0.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313125915|ref|YP_004036185.1| - 3.5e-11 43.4 0.4 5.2e-11 42.8 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DNA_primase_S PF01896.14 gi|313125916|ref|YP_004036186.1| - 1.8e-22 79.7 0.0 2.8e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit APG17 PF04108.7 gi|313125916|ref|YP_004036186.1| - 0.077 11.7 0.0 0.097 11.4 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 HHH PF00633.18 gi|313125916|ref|YP_004036186.1| - 0.11 12.2 0.2 0.33 10.7 0.1 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif AhpC-TSA PF00578.16 gi|313125918|ref|YP_004036188.1| - 3.6e-40 136.5 0.0 4.3e-40 136.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313125918|ref|YP_004036188.1| - 1.9e-24 85.8 0.0 2.2e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|313125918|ref|YP_004036188.1| - 0.00013 21.4 0.0 0.00014 21.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.9 gi|313125918|ref|YP_004036188.1| - 0.006 16.2 0.0 0.0097 15.5 0.0 1.4 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.1 gi|313125918|ref|YP_004036188.1| - 0.019 14.8 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme GSHPx PF00255.14 gi|313125918|ref|YP_004036188.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Gla PF00594.15 gi|313125918|ref|YP_004036188.1| - 9.9 5.9 7.1 8.2 6.2 0.9 3.0 3 0 0 3 3 3 0 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain AAA PF00004.24 gi|313125920|ref|YP_004036190.1| - 1.5e-100 332.6 0.0 3.8e-49 166.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|313125920|ref|YP_004036190.1| - 6.1e-24 83.7 0.0 2.6e-23 81.7 0.0 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|313125920|ref|YP_004036190.1| - 1.4e-18 67.3 0.1 5.9e-09 36.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|313125920|ref|YP_004036190.1| - 9.1e-17 60.8 0.0 2.5e-08 33.2 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|313125920|ref|YP_004036190.1| - 1.5e-16 60.8 0.0 1e-08 35.4 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|313125920|ref|YP_004036190.1| - 7.4e-15 54.3 0.4 2e-14 52.9 0.3 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|313125920|ref|YP_004036190.1| - 2.2e-13 50.5 0.1 6.7e-05 23.0 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|313125920|ref|YP_004036190.1| - 4.3e-12 46.9 2.6 9.7e-05 23.1 0.1 3.3 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|313125920|ref|YP_004036190.1| - 5.6e-12 45.5 0.8 0.00035 20.3 0.0 4.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|313125920|ref|YP_004036190.1| - 1.1e-11 44.6 0.0 0.00014 21.7 0.0 2.8 3 0 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|313125920|ref|YP_004036190.1| - 1.7e-10 40.1 0.0 0.00014 20.7 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|313125920|ref|YP_004036190.1| - 2.7e-10 39.8 0.2 0.00086 19.0 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain AAA_33 PF13671.1 gi|313125920|ref|YP_004036190.1| - 6.1e-10 39.1 0.0 0.0005 19.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|313125920|ref|YP_004036190.1| - 6e-09 35.5 0.0 0.00057 19.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|313125920|ref|YP_004036190.1| - 6.5e-09 35.1 0.0 0.0039 16.3 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_3 PF07726.6 gi|313125920|ref|YP_004036190.1| - 8.3e-08 31.9 0.0 0.011 15.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|313125920|ref|YP_004036190.1| - 8.4e-08 32.5 0.0 0.012 15.8 0.0 2.9 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|313125920|ref|YP_004036190.1| - 1.2e-07 31.8 0.0 0.023 14.8 0.0 2.8 2 1 0 2 2 2 2 RNA helicase DUF815 PF05673.8 gi|313125920|ref|YP_004036190.1| - 2.5e-07 29.9 0.0 0.00037 19.4 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|313125920|ref|YP_004036190.1| - 3.3e-07 30.4 0.0 0.021 14.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|313125920|ref|YP_004036190.1| - 8.5e-07 28.3 0.2 0.03 13.5 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|313125920|ref|YP_004036190.1| - 4e-06 26.4 0.0 0.092 12.2 0.0 3.2 3 1 0 3 3 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|313125920|ref|YP_004036190.1| - 5.1e-06 25.5 0.0 0.086 11.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|313125920|ref|YP_004036190.1| - 5.5e-06 26.4 0.0 0.11 12.5 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|313125920|ref|YP_004036190.1| - 7.8e-06 25.2 0.1 0.063 12.4 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.7 gi|313125920|ref|YP_004036190.1| - 8e-06 25.6 0.1 0.39 10.3 0.0 3.8 4 0 0 4 4 4 2 NACHT domain Arch_ATPase PF01637.13 gi|313125920|ref|YP_004036190.1| - 1e-05 25.4 0.0 0.18 11.4 0.0 3.6 2 2 1 3 3 3 2 Archaeal ATPase DUF2075 PF09848.4 gi|313125920|ref|YP_004036190.1| - 1.1e-05 24.5 0.0 0.063 12.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|313125920|ref|YP_004036190.1| - 1.4e-05 24.5 9.6 0.56 9.5 0.1 4.7 3 2 1 5 5 5 3 AAA domain ABC_tran PF00005.22 gi|313125920|ref|YP_004036190.1| - 1.6e-05 25.2 0.0 0.17 12.1 0.0 2.7 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|313125920|ref|YP_004036190.1| - 2.3e-05 23.6 0.1 0.65 9.0 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_11 PF13086.1 gi|313125920|ref|YP_004036190.1| - 5.9e-05 22.7 0.0 0.34 10.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|313125920|ref|YP_004036190.1| - 7.2e-05 22.5 0.9 0.35 10.5 0.0 3.6 2 2 1 3 3 3 2 NTPase AAA_24 PF13479.1 gi|313125920|ref|YP_004036190.1| - 7.9e-05 22.3 0.0 0.041 13.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|313125920|ref|YP_004036190.1| - 9.7e-05 22.0 0.0 0.49 9.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|313125920|ref|YP_004036190.1| - 0.0001 21.2 0.0 0.27 10.0 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 UPF0079 PF02367.12 gi|313125920|ref|YP_004036190.1| - 0.00012 21.6 0.0 0.47 10.0 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|313125920|ref|YP_004036190.1| - 0.00042 20.0 0.0 0.15 11.6 0.0 2.8 2 2 0 2 2 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|313125920|ref|YP_004036190.1| - 0.0006 18.7 0.0 0.63 8.8 0.0 2.6 2 1 0 2 2 2 2 Type II/IV secretion system protein SKI PF01202.17 gi|313125920|ref|YP_004036190.1| - 0.001 18.9 0.0 1.9 8.3 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|313125920|ref|YP_004036190.1| - 0.0014 18.4 0.0 2.3 8.0 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|313125920|ref|YP_004036190.1| - 0.003 17.1 0.0 0.5 9.8 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|313125920|ref|YP_004036190.1| - 0.0058 15.4 0.2 5.4 5.7 0.0 3.0 2 1 0 2 2 2 0 AFG1-like ATPase KAP_NTPase PF07693.9 gi|313125920|ref|YP_004036190.1| - 0.0092 15.0 0.0 2.6 6.9 0.0 2.7 2 2 0 2 2 2 1 KAP family P-loop domain Guanylate_kin PF00625.16 gi|313125920|ref|YP_004036190.1| - 0.011 15.2 0.4 24 4.3 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase Cytidylate_kin2 PF13189.1 gi|313125920|ref|YP_004036190.1| - 0.015 15.2 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family CPT PF07931.7 gi|313125920|ref|YP_004036190.1| - 0.016 14.8 0.0 3.7 7.1 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Molydop_binding PF01568.16 gi|313125920|ref|YP_004036190.1| - 0.019 14.7 0.0 0.092 12.5 0.0 2.2 2 0 0 2 2 1 0 Molydopterin dinucleotide binding domain Torsin PF06309.6 gi|313125920|ref|YP_004036190.1| - 0.04 13.8 0.0 3 7.7 0.0 2.4 2 0 0 2 2 2 0 Torsin Vps4_C PF09336.5 gi|313125920|ref|YP_004036190.1| - 0.05 13.4 0.1 0.68 9.8 0.0 2.8 3 0 0 3 3 2 0 Vps4 C terminal oligomerisation domain KTI12 PF08433.5 gi|313125920|ref|YP_004036190.1| - 0.061 12.5 0.0 9.5 5.3 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PIF1 PF05970.9 gi|313125920|ref|YP_004036190.1| - 0.13 11.2 0.0 4.9 5.9 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase Viral_helicase1 PF01443.13 gi|313125920|ref|YP_004036190.1| - 0.14 11.6 0.0 13 5.2 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.7 gi|313125920|ref|YP_004036190.1| - 0.21 11.0 0.3 32 3.9 0.1 3.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) GvpH PF05455.6 gi|313125921|ref|YP_004036191.1| - 0.043 13.4 0.2 0.049 13.2 0.1 1.0 1 0 0 1 1 1 0 GvpH HSP20 PF00011.16 gi|313125921|ref|YP_004036191.1| - 0.095 12.5 0.2 7.9 6.4 0.0 2.1 1 1 1 2 2 2 0 Hsp20/alpha crystallin family OrfB_Zn_ribbon PF07282.6 gi|313125922|ref|YP_004036192.1| - 4.1e-24 84.0 2.5 1.2e-23 82.5 1.7 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|313125922|ref|YP_004036192.1| - 4.5e-12 45.8 0.0 6.8e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Probable transposase UxuA PF03786.8 gi|313125922|ref|YP_004036192.1| - 0.054 12.0 0.0 0.08 11.4 0.0 1.2 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) DUF2072 PF09845.4 gi|313125922|ref|YP_004036192.1| - 0.12 12.2 3.4 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) Abhydrolase_6 PF12697.2 gi|313125923|ref|YP_004036193.1| - 1.9e-35 122.8 2.9 2.2e-35 122.6 2.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313125923|ref|YP_004036193.1| - 6.4e-18 64.8 0.1 2.3e-17 63.0 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313125923|ref|YP_004036193.1| - 1.2e-14 54.4 0.3 9.4e-13 48.2 0.2 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|313125923|ref|YP_004036193.1| - 0.055 13.3 0.0 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 TAP-like protein Hydrolase_4 PF12146.3 gi|313125923|ref|YP_004036193.1| - 0.058 13.2 0.1 0.15 11.9 0.1 1.8 1 1 0 1 1 1 0 Putative lysophospholipase FSH1 PF03959.8 gi|313125923|ref|YP_004036193.1| - 0.066 12.6 0.0 0.6 9.5 0.0 2.4 2 1 0 2 2 2 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.11 gi|313125923|ref|YP_004036193.1| - 0.12 11.7 0.5 7.4 5.9 0.0 2.8 2 1 1 3 3 3 0 Phospholipase/Carboxylesterase Pantoate_transf PF02548.10 gi|313125924|ref|YP_004036194.1| - 2.9e-97 324.8 0.3 3.3e-97 324.7 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|313125924|ref|YP_004036194.1| - 3.8e-06 26.3 2.8 0.00032 20.0 1.2 2.6 1 1 2 3 3 3 2 Phosphoenolpyruvate phosphomutase DUF1469 PF07332.6 gi|313125925|ref|YP_004036195.1| - 0.054 13.2 0.9 0.061 13.0 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) IF-2B PF01008.12 gi|313125926|ref|YP_004036196.1| - 2.1e-43 148.3 1.9 2.7e-43 147.9 1.3 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family THDPS_N_2 PF14805.1 gi|313125926|ref|YP_004036196.1| - 0.018 14.8 1.0 0.032 14.0 0.1 1.9 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DUF927 PF06048.6 gi|313125926|ref|YP_004036196.1| - 0.022 14.0 1.0 0.098 11.9 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF927) AF0941-like PF14591.1 gi|313125926|ref|YP_004036196.1| - 0.084 12.9 0.7 0.25 11.3 0.4 1.9 1 1 0 1 1 1 0 AF0941-like ABC_tran PF00005.22 gi|313125927|ref|YP_004036197.1| - 1.4e-31 109.6 0.0 2.1e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|313125927|ref|YP_004036197.1| - 5.1e-08 32.4 0.8 3.7e-06 26.3 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|313125927|ref|YP_004036197.1| - 2.3e-07 31.0 0.0 0.0044 17.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|313125927|ref|YP_004036197.1| - 5.6e-06 27.1 0.0 1.6e-05 25.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain ABC_membrane PF00664.18 gi|313125927|ref|YP_004036197.1| - 5.8e-06 25.9 6.0 1.7e-05 24.4 4.2 1.6 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_29 PF13555.1 gi|313125927|ref|YP_004036197.1| - 0.00075 18.9 0.1 0.0016 17.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|313125927|ref|YP_004036197.1| - 0.00078 19.4 0.0 0.0021 18.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313125927|ref|YP_004036197.1| - 0.0013 18.7 0.1 0.0031 17.5 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313125927|ref|YP_004036197.1| - 0.0015 18.6 0.2 0.014 15.4 0.1 2.4 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|313125927|ref|YP_004036197.1| - 0.0028 17.0 0.6 0.0091 15.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|313125927|ref|YP_004036197.1| - 0.0029 17.2 1.2 0.038 13.5 0.8 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313125927|ref|YP_004036197.1| - 0.0054 15.9 0.0 0.013 14.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|313125927|ref|YP_004036197.1| - 0.006 15.6 0.3 0.015 14.4 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|313125927|ref|YP_004036197.1| - 0.012 15.4 0.0 0.028 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|313125927|ref|YP_004036197.1| - 0.055 13.7 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|313125927|ref|YP_004036197.1| - 0.072 12.9 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 SbcCD_C PF13558.1 gi|313125927|ref|YP_004036197.1| - 0.2 11.6 3.6 0.19 11.6 0.3 2.7 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit Acetyltransf_9 PF13527.1 gi|313125929|ref|YP_004036199.1| - 6.2e-10 39.0 0.1 2.1e-09 37.2 0.0 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313125929|ref|YP_004036199.1| - 0.0013 18.8 0.0 0.13 12.3 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DEAD_assoc PF08494.6 gi|313125929|ref|YP_004036199.1| - 0.0021 17.8 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated Acetyltransf_7 PF13508.1 gi|313125929|ref|YP_004036199.1| - 0.007 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313125929|ref|YP_004036199.1| - 0.092 12.7 0.1 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family PqqD PF05402.7 gi|313125930|ref|YP_004036200.1| - 2.4e-17 62.6 0.6 3.4e-17 62.2 0.4 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_20 PF12840.2 gi|313125930|ref|YP_004036200.1| - 0.0092 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain NTP_transf_5 PF14907.1 gi|313125931|ref|YP_004036201.1| - 4.6e-52 176.8 0.0 5.7e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Hpr_kinase_C PF07475.7 gi|313125932|ref|YP_004036202.1| - 7.7e-07 28.5 0.2 1.4e-06 27.7 0.2 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.1 gi|313125932|ref|YP_004036202.1| - 0.00072 19.0 0.2 0.0014 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|313125932|ref|YP_004036202.1| - 0.0042 17.3 0.0 0.0073 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.1 gi|313125932|ref|YP_004036202.1| - 0.0067 16.4 0.1 0.013 15.5 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain DUF4649 PF15507.1 gi|313125932|ref|YP_004036202.1| - 0.016 14.9 0.0 0.21 11.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4649) DUF258 PF03193.11 gi|313125932|ref|YP_004036202.1| - 0.069 12.3 0.1 0.24 10.5 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|313125932|ref|YP_004036202.1| - 0.09 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|313125932|ref|YP_004036202.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|313125932|ref|YP_004036202.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 KaiC PEPCK_ATP PF01293.15 gi|313125932|ref|YP_004036202.1| - 0.12 10.8 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_30 PF13604.1 gi|313125932|ref|YP_004036202.1| - 0.15 11.6 0.7 0.24 10.9 0.5 1.2 1 0 0 1 1 1 0 AAA domain GFO_IDH_MocA PF01408.17 gi|313125934|ref|YP_004036204.1| - 2.9e-15 56.8 0.0 4.5e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313125934|ref|YP_004036204.1| - 1.5e-12 47.2 0.3 3.8e-12 46.0 0.2 1.8 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|313125934|ref|YP_004036204.1| - 0.0093 15.4 0.0 0.033 13.6 0.0 1.8 1 1 0 1 1 1 1 Putative oxidoreductase C terminal AP_endonuc_2 PF01261.19 gi|313125935|ref|YP_004036205.1| - 1.4e-32 112.7 1.1 1.9e-32 112.2 0.8 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|313125935|ref|YP_004036205.1| - 3.5e-17 61.6 0.0 9.3e-17 60.3 0.0 1.8 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|313125935|ref|YP_004036205.1| - 0.038 13.9 0.0 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) GYD PF08734.6 gi|313125936|ref|YP_004036206.1| - 4.1e-06 26.4 0.0 5.1e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 GYD domain Acetyltransf_1 PF00583.19 gi|313125937|ref|YP_004036207.1| - 8.4e-14 51.3 0.2 1.5e-13 50.5 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313125937|ref|YP_004036207.1| - 5.1e-12 45.7 0.1 9.3e-12 44.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313125937|ref|YP_004036207.1| - 1.4e-10 40.8 0.0 2.3e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|313125937|ref|YP_004036207.1| - 1.3e-09 38.2 0.1 1.8e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313125937|ref|YP_004036207.1| - 0.0003 20.7 0.6 0.00056 19.8 0.4 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313125937|ref|YP_004036207.1| - 0.0023 17.7 0.1 0.008 16.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313125937|ref|YP_004036207.1| - 0.018 15.0 0.0 0.026 14.4 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125937|ref|YP_004036207.1| - 0.041 13.7 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|313125937|ref|YP_004036207.1| - 0.11 12.7 0.1 0.2 11.7 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.1 gi|313125937|ref|YP_004036207.1| - 0.37 11.1 2.2 0.81 10.0 1.5 1.5 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Archease PF01951.11 gi|313125938|ref|YP_004036208.1| - 2.7e-26 92.1 0.0 3e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DoxX PF07681.7 gi|313125939|ref|YP_004036209.1| - 1.4e-08 35.0 7.9 1.4e-08 35.0 5.5 4.0 4 1 0 4 4 4 2 DoxX DoxD PF04173.8 gi|313125939|ref|YP_004036209.1| - 0.066 12.8 9.6 8 6.1 0.4 3.8 2 1 0 3 3 3 0 TQO small subunit DoxD RtcB PF01139.12 gi|313125940|ref|YP_004036210.1| - 5e-147 490.2 0.0 5.7e-147 490.0 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB PsaD PF02531.11 gi|313125940|ref|YP_004036210.1| - 0.016 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 PsaD DUF3429 PF11911.3 gi|313125941|ref|YP_004036211.1| - 0.00098 19.1 1.4 0.0013 18.7 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3429) AA_permease_C PF13906.1 gi|313125941|ref|YP_004036211.1| - 1 9.3 4.3 7.1 6.5 0.1 2.8 3 0 0 3 3 3 0 C-terminus of AA_permease zf-ribbon_3 PF13248.1 gi|313125942|ref|YP_004036212.1| - 0.02 14.0 0.9 0.048 12.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|313125942|ref|YP_004036212.1| - 0.054 13.2 0.0 0.17 11.6 0.0 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF2296 PF10058.4 gi|313125942|ref|YP_004036212.1| - 0.066 12.9 0.3 0.16 11.7 0.2 1.7 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Mss51 PF13824.1 gi|313125942|ref|YP_004036212.1| - 0.11 12.3 0.4 0.43 10.4 0.1 2.1 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|313125942|ref|YP_004036212.1| - 0.11 11.9 0.1 0.11 11.9 0.1 2.0 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|313125942|ref|YP_004036212.1| - 0.14 11.8 1.0 0.27 10.9 0.2 1.9 2 0 0 2 2 2 0 Nudix N-terminal RRN7 PF11781.3 gi|313125942|ref|YP_004036212.1| - 0.98 8.9 3.1 1.8 8.1 0.3 2.6 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Desulfoferrod_N PF06397.7 gi|313125942|ref|YP_004036212.1| - 2.2 7.7 5.0 0.26 10.6 0.3 1.8 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain DUF1610 PF07754.6 gi|313125942|ref|YP_004036212.1| - 2.6 8.2 5.0 0.52 10.4 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HAD_2 PF13419.1 gi|313125943|ref|YP_004036213.1| - 4.2e-12 46.6 2.3 2.6e-08 34.2 0.0 2.0 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313125943|ref|YP_004036213.1| - 1.4e-06 27.8 0.0 2.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313125943|ref|YP_004036213.1| - 4.5e-05 23.9 0.9 0.052 13.9 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|313125943|ref|YP_004036213.1| - 0.074 13.2 0.7 0.52 10.4 0.5 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_1 PF00441.19 gi|313125944|ref|YP_004036214.1| - 1.3e-53 181.1 2.9 1.9e-53 180.6 2.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313125944|ref|YP_004036214.1| - 1.5e-33 115.7 0.2 1.5e-33 115.7 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|313125944|ref|YP_004036214.1| - 1e-22 80.8 3.0 1e-22 80.8 2.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313125944|ref|YP_004036214.1| - 2.9e-19 68.3 0.0 7.1e-19 67.0 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HTH_Tnp_Tc3_1 PF11427.3 gi|313125944|ref|YP_004036214.1| - 0.066 12.8 0.0 14 5.3 0.0 2.6 2 0 0 2 2 2 0 Tc3 transposase tRNA_SAD PF07973.9 gi|313125945|ref|YP_004036215.1| - 5.7e-12 45.3 0.0 9.6e-12 44.5 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|313125945|ref|YP_004036215.1| - 1.1e-09 37.1 0.0 1.7e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|313125945|ref|YP_004036215.1| - 2.8e-05 23.7 5.1 7.9e-05 22.2 3.2 2.1 2 0 0 2 2 2 1 DHHA1 domain HTH_31 PF13560.1 gi|313125946|ref|YP_004036216.1| - 6.4e-06 26.2 1.9 1e-05 25.6 0.5 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain SR-25 PF10500.4 gi|313125946|ref|YP_004036216.1| - 0.0058 16.1 0.7 0.007 15.8 0.5 1.1 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein PhnA_Zn_Ribbon PF08274.7 gi|313125946|ref|YP_004036216.1| - 0.014 15.1 0.2 0.035 13.8 0.1 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_3 PF01381.17 gi|313125946|ref|YP_004036216.1| - 0.055 13.3 0.4 0.098 12.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix Asparaginase_2 PF01112.13 gi|313125946|ref|YP_004036216.1| - 0.083 11.5 0.2 0.11 11.2 0.1 1.2 1 0 0 1 1 1 0 Asparaginase HTH_19 PF12844.2 gi|313125946|ref|YP_004036216.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.1 gi|313125946|ref|YP_004036216.1| - 0.14 11.8 0.4 0.28 10.8 0.2 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2201_N PF13203.1 gi|313125946|ref|YP_004036216.1| - 9.8 5.2 9.4 9 5.3 5.1 1.7 1 1 1 2 2 2 0 Putative metallopeptidase domain GrpB PF04229.9 gi|313125947|ref|YP_004036217.1| - 4.9e-47 159.7 0.0 5.6e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 GrpB protein DUF420 PF04238.7 gi|313125948|ref|YP_004036218.1| - 7.3e-35 119.8 9.1 7.3e-35 119.8 6.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|313125948|ref|YP_004036218.1| - 2.5e-05 24.3 3.6 2.5e-05 24.3 2.5 3.0 1 1 2 3 3 3 1 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|313125948|ref|YP_004036218.1| - 0.00092 19.3 0.5 0.00092 19.3 0.3 2.2 2 1 1 3 3 3 1 Protein of unknown function (DUF1240) Cytochrom_B561 PF03188.11 gi|313125948|ref|YP_004036218.1| - 0.19 11.5 8.6 1.8 8.4 3.4 2.6 1 1 1 2 2 2 0 Eukaryotic cytochrome b561 Ni_hydr_CYTB PF01292.15 gi|313125948|ref|YP_004036218.1| - 0.58 9.5 7.2 2.9 7.2 5.1 2.3 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 PqiA PF04403.8 gi|313125948|ref|YP_004036218.1| - 1.4 8.4 9.1 2.4 7.7 2.7 2.4 1 1 0 2 2 2 0 Paraquat-inducible protein A Ycf66_N PF07444.6 gi|313125948|ref|YP_004036218.1| - 3.1 7.5 6.5 0.53 10.0 0.4 2.5 2 1 1 3 3 3 0 Ycf66 protein N-terminus Cu-oxidase_2 PF07731.9 gi|313125949|ref|YP_004036219.1| - 4.9e-30 103.8 13.8 7.4e-18 64.3 2.3 3.0 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|313125949|ref|YP_004036219.1| - 3.8e-21 75.0 9.4 9.1e-18 64.1 1.0 2.5 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|313125949|ref|YP_004036219.1| - 3e-14 53.2 0.1 2.4e-13 50.2 0.0 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|313125949|ref|YP_004036219.1| - 2.8e-05 23.9 0.0 0.13 12.1 0.0 2.7 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|313125949|ref|YP_004036219.1| - 0.00082 19.1 1.0 0.00082 19.1 0.7 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|313125951|ref|YP_004036221.1| - 1.7e-33 114.7 6.7 1.2e-16 60.7 0.5 3.3 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313125951|ref|YP_004036221.1| - 6.4e-09 35.6 0.0 0.0015 18.3 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain DUF272 PF03312.10 gi|313125951|ref|YP_004036221.1| - 0.072 13.3 0.1 8 6.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF272) GATase_6 PF13522.1 gi|313125952|ref|YP_004036222.1| - 3.1e-23 82.2 0.0 1.1e-22 80.3 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|313125952|ref|YP_004036222.1| - 7.6e-23 80.5 0.0 4.9e-22 77.9 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|313125952|ref|YP_004036222.1| - 5.5e-20 71.3 0.0 4.3e-14 51.9 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|313125952|ref|YP_004036222.1| - 7.9e-12 45.0 0.1 2.2e-11 43.5 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|313125952|ref|YP_004036222.1| - 0.0014 17.3 0.0 0.0023 16.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|313125953|ref|YP_004036223.1| - 8.8e-26 89.4 11.3 9.5e-26 89.3 7.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|313125953|ref|YP_004036223.1| - 0.0017 18.1 3.2 0.0024 17.6 2.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313125953|ref|YP_004036223.1| - 0.0063 15.6 4.4 0.011 14.8 3.0 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|313125953|ref|YP_004036223.1| - 0.032 14.3 3.0 0.044 13.9 2.1 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family zinc_ribbon_6 PF14599.1 gi|313125953|ref|YP_004036223.1| - 0.043 13.6 1.9 0.054 13.2 1.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon zinc_ribbon_2 PF13240.1 gi|313125953|ref|YP_004036223.1| - 0.048 13.1 5.6 0.12 11.9 3.7 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|313125953|ref|YP_004036223.1| - 0.074 12.1 2.8 1.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Cript PF10235.4 gi|313125953|ref|YP_004036223.1| - 0.1 12.9 3.6 0.13 12.6 2.5 1.1 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT HypA PF01155.14 gi|313125953|ref|YP_004036223.1| - 0.11 12.2 1.6 0.12 12.0 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|313125953|ref|YP_004036223.1| - 0.11 12.0 2.8 0.11 11.9 1.9 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Baculo_ME53 PF06061.6 gi|313125953|ref|YP_004036223.1| - 0.33 9.8 3.4 0.35 9.8 2.4 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 FYVE_2 PF02318.11 gi|313125953|ref|YP_004036223.1| - 0.4 10.5 3.6 0.45 10.4 2.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|313125953|ref|YP_004036223.1| - 0.7 9.6 6.6 1.1 8.9 4.6 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|313125953|ref|YP_004036223.1| - 0.73 9.3 5.0 1.2 8.6 0.3 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|313125953|ref|YP_004036223.1| - 0.94 9.4 5.2 9.4 6.2 3.6 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-HIT PF04438.11 gi|313125953|ref|YP_004036223.1| - 1 9.0 5.5 6.4 6.5 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-C2H2_3 PF13878.1 gi|313125953|ref|YP_004036223.1| - 1.4 8.5 8.1 5 6.7 0.6 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO RNA_POL_M_15KD PF02150.11 gi|313125953|ref|YP_004036223.1| - 2.5 7.8 5.7 4.4 7.0 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.1 gi|313125953|ref|YP_004036223.1| - 8.9 5.9 7.1 3.3 7.3 1.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain LSM PF01423.17 gi|313125954|ref|YP_004036224.1| - 5.4e-14 51.4 0.1 1.2e-13 50.3 0.1 1.6 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|313125954|ref|YP_004036224.1| - 6.4e-07 29.2 0.0 8.4e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain HATPase_c PF02518.21 gi|313125955|ref|YP_004036225.1| - 1.2e-16 60.3 0.0 2.7e-16 59.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313125955|ref|YP_004036225.1| - 4.1e-13 49.5 0.1 8.9e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|313125955|ref|YP_004036225.1| - 8.5e-10 38.6 2.4 9.7e-10 38.4 0.6 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|313125955|ref|YP_004036225.1| - 6.4e-09 35.6 0.1 1.1e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|313125955|ref|YP_004036225.1| - 0.0027 17.5 0.0 0.0078 16.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|313125955|ref|YP_004036225.1| - 0.0049 16.9 0.1 0.01 15.9 0.1 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|313125955|ref|YP_004036225.1| - 0.0057 16.6 0.6 0.013 15.4 0.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|313125955|ref|YP_004036225.1| - 0.0062 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|313125955|ref|YP_004036225.1| - 0.056 13.4 2.8 0.063 13.2 0.1 2.5 3 1 1 4 4 4 0 PAS fold HATPase_c_3 PF13589.1 gi|313125955|ref|YP_004036225.1| - 0.092 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|313125955|ref|YP_004036225.1| - 0.11 12.1 2.3 0.24 10.9 1.0 2.0 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Lactamase_B PF00753.22 gi|313125956|ref|YP_004036226.1| - 5.7e-12 45.7 3.6 1.2e-11 44.6 2.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313125956|ref|YP_004036226.1| - 1.6e-06 27.8 0.3 1.2e-05 24.9 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|313125956|ref|YP_004036226.1| - 0.0018 18.0 0.6 0.0018 18.0 0.4 2.2 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase polyprenyl_synt PF00348.12 gi|313125957|ref|YP_004036227.1| - 6.6e-59 198.8 2.2 9.1e-59 198.4 1.5 1.3 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.16 gi|313125958|ref|YP_004036228.1| - 1.3e-57 194.8 0.0 1.7e-57 194.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|313125958|ref|YP_004036228.1| - 6.8e-18 64.9 0.0 2e-17 63.4 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Cyclase PF04199.8 gi|313125959|ref|YP_004036229.1| - 1.1e-26 93.5 0.3 1.5e-26 93.1 0.2 1.2 1 0 0 1 1 1 1 Putative cyclase DUF2116 PF09889.4 gi|313125960|ref|YP_004036230.1| - 0.15 11.8 0.5 0.25 11.1 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RseC_MucC PF04246.7 gi|313125960|ref|YP_004036230.1| - 0.2 11.2 1.6 0.22 11.0 1.1 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF1469 PF07332.6 gi|313125960|ref|YP_004036230.1| - 2.7 7.7 7.0 3 7.5 4.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF456 PF04306.8 gi|313125961|ref|YP_004036231.1| - 3.6e-27 95.1 24.3 3.6e-27 95.1 16.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF456) Tetraspannin PF00335.15 gi|313125961|ref|YP_004036231.1| - 3.2 6.9 16.7 0.35 10.1 7.9 1.9 1 1 1 2 2 2 0 Tetraspanin family O-antigen_lig PF13425.1 gi|313125961|ref|YP_004036231.1| - 3.6 7.5 21.2 6.2 6.7 3.0 2.2 1 1 1 2 2 2 0 O-antigen ligase like membrane protein Fer4 PF00037.22 gi|313125962|ref|YP_004036232.1| - 2.8e-13 48.8 13.3 1e-07 31.2 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|313125962|ref|YP_004036232.1| - 2.9e-11 43.5 12.3 1.7e-09 37.9 4.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313125962|ref|YP_004036232.1| - 1.3e-10 41.3 5.3 2.1e-10 40.7 3.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313125962|ref|YP_004036232.1| - 8.4e-10 38.0 14.6 4e-06 26.4 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313125962|ref|YP_004036232.1| - 2.6e-08 33.5 8.6 7.2e-08 32.1 6.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313125962|ref|YP_004036232.1| - 3e-08 33.3 18.7 1.1e-05 25.0 5.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313125962|ref|YP_004036232.1| - 1.2e-07 31.2 10.2 0.00065 19.4 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|313125962|ref|YP_004036232.1| - 3.1e-07 30.3 4.3 6.7e-07 29.2 3.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|313125962|ref|YP_004036232.1| - 6.8e-07 29.9 4.0 8.5e-05 23.2 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|313125962|ref|YP_004036232.1| - 3.6e-06 27.2 1.0 0.051 13.9 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313125962|ref|YP_004036232.1| - 6.7e-06 26.4 5.5 0.00094 19.5 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|313125962|ref|YP_004036232.1| - 7.1e-06 25.9 8.8 0.00029 20.9 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|313125962|ref|YP_004036232.1| - 0.0011 19.3 14.2 0.0027 18.1 3.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|313125962|ref|YP_004036232.1| - 0.0018 18.7 14.9 0.032 14.7 10.3 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|313125962|ref|YP_004036232.1| - 0.0019 18.5 13.1 0.014 15.7 9.1 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain ETF PF01012.16 gi|313125963|ref|YP_004036233.1| - 2.6e-32 111.8 0.1 4.1e-32 111.1 0.1 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Ub-Mut7C PF14451.1 gi|313125963|ref|YP_004036233.1| - 0.014 14.9 0.0 0.096 12.2 0.0 2.3 2 0 0 2 2 2 0 Mut7-C ubiquitin ETF_alpha PF00766.14 gi|313125964|ref|YP_004036234.1| - 2.2e-24 84.8 0.3 4.3e-24 83.9 0.2 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|313125964|ref|YP_004036234.1| - 4.6e-19 68.7 0.0 1.8e-18 66.7 0.0 2.0 1 1 0 1 1 1 1 Electron transfer flavoprotein domain Prefoldin_3 PF13758.1 gi|313125964|ref|YP_004036234.1| - 0.18 11.6 2.4 0.69 9.7 0.4 2.3 1 1 0 2 2 2 0 Prefoldin subunit FAD_binding_3 PF01494.14 gi|313125965|ref|YP_004036235.1| - 1.9e-11 43.6 3.4 3.7e-10 39.3 2.3 2.3 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|313125965|ref|YP_004036235.1| - 2.3e-10 39.9 4.9 4.3e-06 25.8 3.9 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|313125965|ref|YP_004036235.1| - 6.6e-07 28.7 0.8 1e-06 28.1 0.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313125965|ref|YP_004036235.1| - 2.4e-05 24.3 0.8 0.00016 21.5 0.5 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313125965|ref|YP_004036235.1| - 4.2e-05 22.5 4.5 0.00012 21.0 1.4 2.3 2 1 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|313125965|ref|YP_004036235.1| - 5e-05 22.5 0.8 9e-05 21.6 0.3 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|313125965|ref|YP_004036235.1| - 5.1e-05 23.2 4.0 8.1e-05 22.5 1.5 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313125965|ref|YP_004036235.1| - 0.0012 17.4 2.0 0.0021 16.5 1.4 1.4 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.9 gi|313125965|ref|YP_004036235.1| - 0.0021 16.7 0.5 0.13 10.8 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|313125965|ref|YP_004036235.1| - 0.0024 17.9 0.1 0.004 17.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313125965|ref|YP_004036235.1| - 0.0078 15.1 2.8 0.053 12.3 2.8 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|313125965|ref|YP_004036235.1| - 0.013 15.9 2.9 1.7 9.1 1.1 3.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|313125965|ref|YP_004036235.1| - 0.054 13.3 0.4 0.14 11.9 0.3 1.7 1 0 0 1 1 1 0 ThiF family Fer4_7 PF12838.2 gi|313125965|ref|YP_004036235.1| - 0.14 12.5 1.4 0.28 11.5 1.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313125965|ref|YP_004036235.1| - 2.9 7.9 5.4 0.51 10.3 0.5 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Acetyltransf_4 PF13420.1 gi|313125967|ref|YP_004036237.1| - 1e-16 61.2 0.1 1.6e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313125967|ref|YP_004036237.1| - 1.3e-13 50.8 0.1 2.7e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313125967|ref|YP_004036237.1| - 3.7e-09 36.7 0.0 1.1e-08 35.2 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313125967|ref|YP_004036237.1| - 1.2e-06 28.7 0.2 2.5e-06 27.7 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313125967|ref|YP_004036237.1| - 1.4e-06 28.3 0.0 3.3e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313125967|ref|YP_004036237.1| - 0.0021 17.9 0.0 0.0064 16.3 0.0 1.9 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|313125967|ref|YP_004036237.1| - 0.0026 17.6 0.1 0.012 15.5 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Fe_dep_repress PF01325.14 gi|313125967|ref|YP_004036237.1| - 0.0027 17.5 0.0 0.0063 16.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|313125967|ref|YP_004036237.1| - 0.0068 16.0 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|313125967|ref|YP_004036237.1| - 0.019 14.5 0.0 0.042 13.4 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain DUF762 PF05555.6 gi|313125967|ref|YP_004036237.1| - 0.037 13.2 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF762) HTH_27 PF13463.1 gi|313125967|ref|YP_004036237.1| - 0.082 13.2 0.0 0.37 11.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain Acetyltransf_9 PF13527.1 gi|313125967|ref|YP_004036237.1| - 0.099 12.5 0.1 0.2 11.4 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|313125969|ref|YP_004036239.1| - 1e-52 178.3 0.0 2.2e-52 177.2 0.0 1.6 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|313125969|ref|YP_004036239.1| - 2.8e-46 157.3 0.0 4.4e-46 156.7 0.0 1.3 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|313125969|ref|YP_004036239.1| - 7.1e-22 76.9 0.0 4.9e-21 74.2 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|313125969|ref|YP_004036239.1| - 1.1e-11 44.7 0.0 1.5e-10 41.0 0.0 2.4 2 0 0 2 2 2 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|313125969|ref|YP_004036239.1| - 1.3e-05 24.8 0.3 3.1e-05 23.6 0.2 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.1 gi|313125969|ref|YP_004036239.1| - 0.00055 20.0 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Ribosomal_L7Ae PF01248.21 gi|313125970|ref|YP_004036240.1| - 6.7e-25 86.4 0.1 8e-25 86.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|313125970|ref|YP_004036240.1| - 0.0016 18.1 0.1 0.0026 17.5 0.0 1.4 2 0 0 2 2 2 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|313125970|ref|YP_004036240.1| - 0.0026 18.0 0.3 0.0036 17.5 0.2 1.4 1 1 1 2 2 2 1 eRF1 domain 3 HGD-D PF06050.8 gi|313125970|ref|YP_004036240.1| - 0.039 12.7 0.0 0.049 12.4 0.0 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component DUF1269 PF06897.7 gi|313125970|ref|YP_004036240.1| - 0.19 11.7 1.4 6 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|313125971|ref|YP_004036241.1| - 9.4e-29 98.9 0.9 9.7e-29 98.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|313125972|ref|YP_004036242.1| - 2.6e-21 75.2 0.0 2.6e-21 75.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e NDK PF00334.14 gi|313125973|ref|YP_004036243.1| - 5.8e-57 191.2 0.0 6.6e-57 191.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Meth_synt_2 PF01717.13 gi|313125974|ref|YP_004036244.1| - 6e-78 262.0 0.0 7.2e-78 261.8 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|313125974|ref|YP_004036244.1| - 6.2e-21 74.9 0.0 3.4e-19 69.2 0.0 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|313125974|ref|YP_004036244.1| - 0.00056 18.9 0.0 0.00076 18.4 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|313125975|ref|YP_004036245.1| - 7.6e-24 84.5 0.0 5.3e-21 75.1 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|313125975|ref|YP_004036245.1| - 9.3e-14 51.1 0.0 1.2e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Methyltransf_26 PF13659.1 gi|313125976|ref|YP_004036246.1| - 7.2e-16 58.2 0.0 1e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313125976|ref|YP_004036246.1| - 1.2e-14 54.0 0.0 1.6e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|313125976|ref|YP_004036246.1| - 2.7e-08 34.2 0.0 2.3e-07 31.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313125976|ref|YP_004036246.1| - 1.3e-05 25.7 0.0 1.8e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313125976|ref|YP_004036246.1| - 4.3e-05 23.1 0.0 5.5e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313125976|ref|YP_004036246.1| - 0.00062 19.5 0.0 0.0032 17.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313125976|ref|YP_004036246.1| - 0.00065 20.1 0.0 0.0019 18.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125976|ref|YP_004036246.1| - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain NIF3 PF01784.13 gi|313125976|ref|YP_004036246.1| - 0.0017 17.9 0.0 0.0024 17.4 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) UPF0020 PF01170.13 gi|313125976|ref|YP_004036246.1| - 0.0035 16.9 0.0 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|313125976|ref|YP_004036246.1| - 0.0097 15.0 0.0 0.016 14.3 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|313125976|ref|YP_004036246.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PCMT PF01135.14 gi|313125976|ref|YP_004036246.1| - 0.03 13.8 0.0 0.053 13.0 0.0 1.4 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MS_channel PF00924.13 gi|313125977|ref|YP_004036247.1| - 1.3e-50 171.6 0.3 1.3e-50 171.6 0.2 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel RrnaAD PF00398.15 gi|313125978|ref|YP_004036248.1| - 4.7e-49 166.7 0.0 5.9e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|313125978|ref|YP_004036248.1| - 3.9e-10 39.7 0.2 9.9e-10 38.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313125978|ref|YP_004036248.1| - 1.4e-05 25.6 0.0 3.6e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313125978|ref|YP_004036248.1| - 0.0025 17.2 0.0 0.0039 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|313125978|ref|YP_004036248.1| - 0.0052 16.2 0.0 0.0088 15.4 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Spermine_synth PF01564.12 gi|313125978|ref|YP_004036248.1| - 0.0072 15.2 0.0 0.01 14.7 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_12 PF08242.7 gi|313125978|ref|YP_004036248.1| - 0.0085 16.5 0.0 0.021 15.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313125978|ref|YP_004036248.1| - 0.017 15.5 0.0 0.037 14.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|313125978|ref|YP_004036248.1| - 0.036 13.4 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TrkA_N PF02254.13 gi|313125978|ref|YP_004036248.1| - 0.061 13.3 0.3 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain PCMT PF01135.14 gi|313125978|ref|YP_004036248.1| - 0.09 12.2 0.0 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|313125978|ref|YP_004036248.1| - 0.14 11.7 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.7 gi|313125979|ref|YP_004036249.1| - 1.5e-65 220.2 0.2 1.8e-65 220.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|313125979|ref|YP_004036249.1| - 4.9e-06 26.3 0.0 1.2e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|313125979|ref|YP_004036249.1| - 0.00025 21.0 0.0 0.0011 19.0 0.0 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|313125979|ref|YP_004036249.1| - 0.0097 16.0 0.1 0.052 13.7 0.0 2.1 1 1 1 2 2 2 2 Helix-hairpin-helix domain DUF1473 PF07341.6 gi|313125979|ref|YP_004036249.1| - 0.029 13.9 0.2 0.057 12.9 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1473) HHH PF00633.18 gi|313125979|ref|YP_004036249.1| - 0.12 12.1 0.7 0.48 10.2 0.0 2.5 3 0 0 3 3 3 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|313125980|ref|YP_004036250.1| - 2.3e-16 59.8 1.9 2.6e-16 59.6 1.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 Ribosomal_L21e PF01157.13 gi|313125981|ref|YP_004036251.1| - 1e-33 115.0 0.3 1.1e-33 114.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Cys_Met_Meta_PP PF01053.15 gi|313125982|ref|YP_004036252.1| - 2.3e-153 510.0 0.0 2.6e-153 509.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|313125982|ref|YP_004036252.1| - 0.00038 19.2 0.0 0.00084 18.1 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|313125982|ref|YP_004036252.1| - 0.014 14.3 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Met_gamma_lyase PF06838.6 gi|313125982|ref|YP_004036252.1| - 0.018 13.3 0.0 0.024 12.9 0.0 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase ATPase_gene1 PF09527.5 gi|313125983|ref|YP_004036253.1| - 0.003 17.3 10.6 0.0044 16.7 7.4 1.3 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit (ATPase_gene1) TrbC PF04956.8 gi|313125983|ref|YP_004036253.1| - 0.0087 16.0 0.4 0.011 15.7 0.3 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family OPT PF03169.10 gi|313125983|ref|YP_004036253.1| - 0.014 13.8 0.1 0.014 13.8 0.1 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein MtrG PF04210.8 gi|313125983|ref|YP_004036253.1| - 0.026 14.2 0.7 0.026 14.2 0.5 1.8 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G PRA1 PF03208.14 gi|313125983|ref|YP_004036253.1| - 0.1 11.9 0.4 0.11 11.8 0.2 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF543 PF04418.7 gi|313125983|ref|YP_004036253.1| - 1.1 9.2 5.2 9.8 6.2 0.5 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF543) DUF3487 PF11990.3 gi|313125983|ref|YP_004036253.1| - 2.3 7.6 9.3 4 6.8 6.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2523 PF10734.4 gi|313125983|ref|YP_004036253.1| - 3.2 8.0 9.2 2.7 8.2 1.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2523) EF1_GNE PF00736.14 gi|313125984|ref|YP_004036254.1| - 1.1e-21 76.2 0.1 1.2e-21 76.1 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|313125984|ref|YP_004036254.1| - 0.12 12.5 0.1 0.34 11.0 0.0 1.7 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|313125985|ref|YP_004036255.1| - 1.7e-08 34.3 13.4 6.8e-05 22.8 3.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|313125985|ref|YP_004036255.1| - 0.003 17.3 12.2 0.51 10.1 8.4 2.3 1 1 0 1 1 1 1 Double zinc ribbon C1_3 PF07649.7 gi|313125985|ref|YP_004036255.1| - 0.0034 17.3 9.5 0.05 13.6 1.0 2.2 2 0 0 2 2 2 2 C1-like domain OrfB_Zn_ribbon PF07282.6 gi|313125985|ref|YP_004036255.1| - 0.031 13.9 8.6 0.16 11.6 0.6 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2039 PF10217.4 gi|313125985|ref|YP_004036255.1| - 0.047 13.7 6.3 0.071 13.1 4.4 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-UBP PF02148.14 gi|313125985|ref|YP_004036255.1| - 0.11 12.6 1.2 0.11 12.6 0.8 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein PolC_DP2 PF03833.8 gi|313125985|ref|YP_004036255.1| - 0.12 10.0 5.5 0.11 10.0 3.8 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NMDAR2_C PF10565.4 gi|313125985|ref|YP_004036255.1| - 0.21 10.2 8.6 0.22 10.1 6.0 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus FYVE_2 PF02318.11 gi|313125985|ref|YP_004036255.1| - 0.46 10.3 7.2 0.5 10.2 5.0 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zf-RING_5 PF14634.1 gi|313125985|ref|YP_004036255.1| - 0.5 10.1 11.0 1.8 8.3 0.8 2.3 2 0 0 2 2 2 0 zinc-RING finger domain Zn_Tnp_IS91 PF14319.1 gi|313125985|ref|YP_004036255.1| - 0.52 9.8 9.3 0.65 9.5 6.5 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-tcix PF14952.1 gi|313125985|ref|YP_004036255.1| - 0.56 9.5 12.4 0.9 8.9 0.0 3.5 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.1 gi|313125985|ref|YP_004036255.1| - 0.64 9.9 13.4 2.5e+02 1.6 9.3 3.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2387 PF09526.5 gi|313125985|ref|YP_004036255.1| - 0.81 9.6 12.7 0.78 9.7 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) C1_1 PF00130.17 gi|313125985|ref|YP_004036255.1| - 0.97 9.2 9.9 1.1 9.0 0.5 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) NMD3 PF04981.8 gi|313125985|ref|YP_004036255.1| - 1.7 7.7 9.3 1.9 7.5 6.4 1.0 1 0 0 1 1 1 0 NMD3 family zf-HIT PF04438.11 gi|313125985|ref|YP_004036255.1| - 1.8 8.2 12.4 2.4 7.8 2.3 2.8 2 1 0 2 2 2 0 HIT zinc finger UPF0547 PF10571.4 gi|313125985|ref|YP_004036255.1| - 1.9 8.2 17.8 0.78 9.4 7.8 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|313125985|ref|YP_004036255.1| - 1.9 7.8 11.5 8.1 5.8 0.3 3.7 2 1 2 4 4 4 0 zinc-ribbon domain DUF1272 PF06906.6 gi|313125985|ref|YP_004036255.1| - 2.3 8.1 10.9 5.8 6.8 7.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.7 gi|313125985|ref|YP_004036255.1| - 2.9 7.7 12.4 8.6 6.2 5.9 2.3 1 1 1 2 2 2 0 zinc-ribbons Ribosomal_L37ae PF01780.14 gi|313125985|ref|YP_004036255.1| - 3.2 7.7 6.3 2.1 8.3 1.5 2.2 1 1 1 2 2 2 0 Ribosomal L37ae protein family DNA_ligase_ZBD PF03119.11 gi|313125985|ref|YP_004036255.1| - 3.6 7.3 9.3 1.5 8.6 0.7 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RNHCP PF12647.2 gi|313125985|ref|YP_004036255.1| - 4.6 7.1 10.7 4.3 7.2 1.4 2.2 1 1 1 2 2 2 0 RNHCP domain Zn-ribbon_8 PF09723.5 gi|313125985|ref|YP_004036255.1| - 5.9 6.9 18.2 9.3 6.2 8.8 3.1 1 1 2 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|313125985|ref|YP_004036255.1| - 7.7 6.1 15.0 18 4.9 0.5 3.8 2 1 1 3 3 3 0 zinc-ribbon domain TctA PF01970.11 gi|313125986|ref|YP_004036256.1| - 1.4e-57 195.0 39.8 1.6e-57 194.8 27.6 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DRTGG PF07085.7 gi|313125986|ref|YP_004036256.1| - 0.12 12.0 0.3 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 DRTGG domain Ribosomal_60s PF00428.14 gi|313125987|ref|YP_004036257.1| - 2.7e-14 53.3 21.9 4.4e-14 52.6 15.2 1.3 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.6 gi|313125987|ref|YP_004036257.1| - 0.42 8.6 2.2 0.51 8.3 1.5 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Sigma70_ner PF04546.8 gi|313125987|ref|YP_004036257.1| - 1.8 8.1 12.5 2.1 7.8 8.7 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region NOA36 PF06524.7 gi|313125987|ref|YP_004036257.1| - 1.8 7.7 5.5 2.1 7.5 3.8 1.2 1 0 0 1 1 1 0 NOA36 protein Ribosomal_L10 PF00466.15 gi|313125988|ref|YP_004036258.1| - 9.2e-21 73.6 0.0 1.6e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|313125988|ref|YP_004036258.1| - 2.1e-05 24.8 13.6 2.1e-05 24.8 9.4 2.2 2 1 0 2 2 2 1 60s Acidic ribosomal protein CobT PF06213.7 gi|313125988|ref|YP_004036258.1| - 0.058 12.5 16.2 0.075 12.1 10.5 1.6 1 1 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF2457 PF10446.4 gi|313125988|ref|YP_004036258.1| - 1.5 7.5 15.2 2.2 6.9 10.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Sigma70_ner PF04546.8 gi|313125988|ref|YP_004036258.1| - 2.1 7.8 12.7 4.9 6.7 8.8 1.6 1 0 0 1 1 1 0 Sigma-70, non-essential region RNA_pol_3_Rpc31 PF11705.3 gi|313125988|ref|YP_004036258.1| - 2.2 8.1 12.8 3.2 7.6 8.9 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Ribosomal_L1 PF00687.16 gi|313125989|ref|YP_004036259.1| - 2.5e-44 151.2 0.0 2.8e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|313125990|ref|YP_004036260.1| - 1.2e-21 75.8 0.1 1.8e-21 75.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|313125990|ref|YP_004036260.1| - 1.2e-20 73.4 0.0 1.6e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Peptidase_M42 PF05343.9 gi|313125991|ref|YP_004036261.1| - 2.8e-78 262.6 6.3 3.2e-78 262.4 4.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|313125991|ref|YP_004036261.1| - 4.1e-11 42.7 1.0 6.8e-11 42.0 0.7 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|313125991|ref|YP_004036261.1| - 2.3e-09 36.2 0.2 2.5e-06 26.2 0.0 2.2 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) GHMP_kinases_N PF00288.21 gi|313125993|ref|YP_004036263.1| - 5.5e-17 61.5 0.2 1.4e-16 60.2 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|313125993|ref|YP_004036263.1| - 8e-14 51.6 1.3 7.4e-13 48.5 0.2 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|313125993|ref|YP_004036263.1| - 8.5e-05 21.7 0.0 0.00017 20.7 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|313125994|ref|YP_004036264.1| - 1.2e-36 126.5 3.1 1.3e-36 126.3 2.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Lactamase_B_2 PF12706.2 gi|313125995|ref|YP_004036265.1| - 1.9e-19 69.9 0.1 2.3e-19 69.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|313125995|ref|YP_004036265.1| - 1.2e-10 41.3 6.4 1.4e-10 41.1 3.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|313125995|ref|YP_004036265.1| - 0.00057 19.6 0.0 0.00091 18.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Mac PF12464.3 gi|313125997|ref|YP_004036267.1| - 0.067 13.2 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 Maltose acetyltransferase DEAD_assoc PF08494.6 gi|313125998|ref|YP_004036268.1| - 1.2e-51 175.0 0.5 2.6e-51 174.0 0.4 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|313125998|ref|YP_004036268.1| - 5.5e-31 107.3 0.0 4.4e-29 101.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|313125998|ref|YP_004036268.1| - 1.2e-15 57.1 0.1 7.4e-15 54.5 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|313125998|ref|YP_004036268.1| - 4e-09 36.5 0.0 1.1e-08 35.1 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|313125998|ref|YP_004036268.1| - 0.0012 18.9 0.4 0.013 15.6 0.0 2.8 3 1 0 3 3 3 1 AAA domain SNF2_N PF00176.18 gi|313125998|ref|YP_004036268.1| - 0.094 11.4 0.1 0.26 10.0 0.0 1.8 2 1 0 2 2 2 0 SNF2 family N-terminal domain Polysacc_synt_C PF14667.1 gi|313125999|ref|YP_004036269.1| - 0.0097 15.7 0.5 0.0097 15.7 0.3 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain SecD_SecF PF02355.11 gi|313125999|ref|YP_004036269.1| - 0.052 12.7 0.1 0.056 12.6 0.1 1.0 1 0 0 1 1 1 0 Protein export membrane protein TraT PF05818.7 gi|313125999|ref|YP_004036269.1| - 0.067 12.6 0.1 0.072 12.5 0.0 1.0 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein FUSC_2 PF13515.1 gi|313125999|ref|YP_004036269.1| - 0.079 12.8 2.5 0.086 12.7 1.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein-like DUF1212 PF06738.7 gi|313125999|ref|YP_004036269.1| - 0.09 12.2 0.4 0.089 12.2 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) DUF3353 PF11833.3 gi|313125999|ref|YP_004036269.1| - 0.15 11.5 0.8 0.15 11.4 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) PspC PF04024.7 gi|313125999|ref|YP_004036269.1| - 1 8.8 5.6 0.62 9.5 2.7 1.5 1 1 0 1 1 1 0 PspC domain HTH_3 PF01381.17 gi|313126000|ref|YP_004036270.1| - 0.0093 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|313126000|ref|YP_004036270.1| - 0.017 15.1 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Na_sulph_symp PF00939.14 gi|313126001|ref|YP_004036271.1| - 4.4e-78 263.2 29.0 5.5e-78 262.9 20.1 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|313126001|ref|YP_004036271.1| - 4e-13 48.6 40.7 8.5e-08 31.1 3.7 3.6 2 2 2 4 4 4 3 Citrate transporter FtsX PF02687.16 gi|313126001|ref|YP_004036271.1| - 0.028 14.1 0.3 0.028 14.1 0.2 5.7 5 2 0 5 5 5 0 FtsX-like permease family ODV-E18 PF10717.4 gi|313126001|ref|YP_004036271.1| - 2.4 7.6 5.7 1 8.8 0.3 2.7 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF4440 PF14534.1 gi|313126002|ref|YP_004036272.1| - 1.1e-09 38.5 0.2 1.3e-09 38.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) S6PP_C PF08472.5 gi|313126002|ref|YP_004036272.1| - 0.0017 17.9 0.0 0.0021 17.6 0.0 1.1 1 0 0 1 1 1 1 Sucrose-6-phosphate phosphohydrolase C-terminal SnoaL_2 PF12680.2 gi|313126002|ref|YP_004036272.1| - 0.0055 17.0 1.2 0.008 16.5 0.6 1.5 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|313126002|ref|YP_004036272.1| - 0.0072 16.3 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF1918 PF08940.6 gi|313126002|ref|YP_004036272.1| - 0.18 11.1 1.3 0.77 9.1 0.4 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1918) AAA_12 PF13087.1 gi|313126003|ref|YP_004036273.1| - 5.3e-41 140.2 0.0 8.5e-41 139.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|313126003|ref|YP_004036273.1| - 2.4e-40 138.6 0.1 7.3e-21 74.8 0.1 3.2 2 1 1 3 3 3 2 AAA domain Dna2 PF08696.6 gi|313126003|ref|YP_004036273.1| - 2.1e-35 121.9 0.0 9.6e-35 119.7 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|313126003|ref|YP_004036273.1| - 8.6e-18 64.6 4.5 6.5e-17 61.7 0.8 3.2 3 1 0 3 3 2 1 AAA domain AAA_19 PF13245.1 gi|313126003|ref|YP_004036273.1| - 2.5e-16 59.1 1.0 7.2e-14 51.2 0.2 2.8 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|313126003|ref|YP_004036273.1| - 3.7e-14 52.7 0.0 2.2e-13 50.1 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|313126003|ref|YP_004036273.1| - 4e-11 42.8 0.0 0.0027 17.2 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|313126003|ref|YP_004036273.1| - 1.2e-05 24.8 0.0 2.9e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.12 gi|313126003|ref|YP_004036273.1| - 1.4e-05 25.1 0.0 0.00021 21.2 0.0 2.5 1 1 0 1 1 1 1 Domain of unknown function DUF83 UvrD_C_2 PF13538.1 gi|313126003|ref|YP_004036273.1| - 1.8e-05 24.8 0.0 5.9e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_16 PF13191.1 gi|313126003|ref|YP_004036273.1| - 3.4e-05 23.9 1.4 0.00038 20.4 0.2 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126003|ref|YP_004036273.1| - 3.8e-05 23.8 0.1 0.00035 20.6 0.0 2.6 3 1 0 3 3 3 1 AAA domain DUF2075 PF09848.4 gi|313126003|ref|YP_004036273.1| - 4.1e-05 22.7 0.1 8.5e-05 21.6 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|313126003|ref|YP_004036273.1| - 0.00092 19.0 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.9 gi|313126003|ref|YP_004036273.1| - 0.0022 17.6 0.0 0.0062 16.1 0.0 1.8 1 0 0 1 1 1 1 Helicase AAA PF00004.24 gi|313126003|ref|YP_004036273.1| - 0.0032 17.6 0.0 0.0072 16.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|313126003|ref|YP_004036273.1| - 0.0044 16.2 0.0 0.035 13.3 0.0 2.2 1 1 0 1 1 1 1 PhoH-like protein IstB_IS21 PF01695.12 gi|313126003|ref|YP_004036273.1| - 0.0065 15.9 0.0 0.019 14.4 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein PIF1 PF05970.9 gi|313126003|ref|YP_004036273.1| - 0.0069 15.3 0.0 0.22 10.4 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase CbiA PF01656.18 gi|313126003|ref|YP_004036273.1| - 0.016 14.5 0.0 0.042 13.2 0.0 1.7 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.9 gi|313126003|ref|YP_004036273.1| - 0.026 14.2 0.0 0.24 11.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|313126003|ref|YP_004036273.1| - 0.032 13.4 0.0 0.07 12.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|313126003|ref|YP_004036273.1| - 0.033 13.6 0.0 0.67 9.3 0.0 2.3 1 1 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|313126003|ref|YP_004036273.1| - 0.034 13.0 0.0 0.06 12.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|313126003|ref|YP_004036273.1| - 0.038 13.8 0.0 0.13 12.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313126003|ref|YP_004036273.1| - 0.057 14.2 0.1 0.46 11.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|313126003|ref|YP_004036273.1| - 0.065 12.6 0.0 0.16 11.3 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|313126003|ref|YP_004036273.1| - 0.072 12.8 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|313126003|ref|YP_004036273.1| - 0.17 11.4 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Erythro_esteras PF05139.9 gi|313126005|ref|YP_004036275.1| - 1.8e-49 168.7 0.1 2.3e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 Erythromycin esterase DUF1460 PF07313.7 gi|313126005|ref|YP_004036275.1| - 0.033 13.3 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1460) SnoaL_3 PF13474.1 gi|313126006|ref|YP_004036276.1| - 6.7e-06 26.1 3.2 2.8e-05 24.1 2.2 1.8 1 1 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.3 gi|313126006|ref|YP_004036276.1| - 0.00017 21.2 0.4 0.00071 19.2 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3225) DUF4440 PF14534.1 gi|313126006|ref|YP_004036276.1| - 0.24 11.6 4.7 0.081 13.1 1.7 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) Keratin_assoc PF09775.4 gi|313126007|ref|YP_004036277.1| - 0.039 13.4 0.2 0.044 13.3 0.2 1.1 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 PAP2 PF01569.16 gi|313126007|ref|YP_004036277.1| - 0.084 12.5 1.1 0.1 12.2 0.8 1.2 1 0 0 1 1 1 0 PAP2 superfamily DUF2342 PF10103.4 gi|313126008|ref|YP_004036278.1| - 1.9e-84 283.5 0.9 3.7e-46 157.6 0.0 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) JmjN PF02375.12 gi|313126008|ref|YP_004036278.1| - 0.17 11.4 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 jmjN domain Glyoxalase_3 PF13468.1 gi|313126009|ref|YP_004036279.1| - 1.8e-21 76.8 0.7 6.5e-21 75.0 0.0 1.9 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|313126009|ref|YP_004036279.1| - 0.00038 21.0 0.2 0.37 11.4 0.0 2.8 3 0 0 3 3 3 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|313126009|ref|YP_004036279.1| - 0.00046 20.1 0.1 0.0027 17.6 0.0 2.2 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ribosomal_S2 PF00318.15 gi|313126010|ref|YP_004036280.1| - 5.8e-37 126.9 0.0 6.2e-19 68.0 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|313126010|ref|YP_004036280.1| - 0.059 12.0 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA DUF1510 PF07423.6 gi|313126010|ref|YP_004036280.1| - 1.4 8.2 9.1 2 7.7 6.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SDA1 PF05285.7 gi|313126010|ref|YP_004036280.1| - 5.2 6.2 10.7 5.6 6.1 7.4 1.1 1 0 0 1 1 1 0 SDA1 Enolase_C PF00113.17 gi|313126011|ref|YP_004036281.1| - 5.1e-77 258.7 0.6 7.1e-77 258.2 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|313126011|ref|YP_004036281.1| - 2.9e-38 130.7 0.2 8.5e-38 129.2 0.1 1.8 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|313126011|ref|YP_004036281.1| - 4e-05 22.6 1.3 5.6e-05 22.1 0.1 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|313126011|ref|YP_004036281.1| - 7.4e-05 23.2 2.0 9.4e-05 22.8 0.2 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|313126011|ref|YP_004036281.1| - 0.042 13.8 0.2 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Enolase C-terminal domain-like RNA_pol_Rpb6 PF01192.17 gi|313126012|ref|YP_004036282.1| - 2.4e-18 65.5 0.0 2.6e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|313126013|ref|YP_004036283.1| - 1.5e-28 98.5 0.3 1.7e-28 98.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|313126014|ref|YP_004036284.1| - 5.5e-36 123.4 0.1 6.2e-36 123.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|313126015|ref|YP_004036285.1| - 4.2e-22 78.5 0.0 5.5e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 DUF3659 PF12396.3 gi|313126015|ref|YP_004036285.1| - 0.016 14.8 1.9 2.8 7.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Ribosomal_L18e PF00828.14 gi|313126016|ref|YP_004036286.1| - 1.3e-14 54.7 0.3 1.5e-14 54.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|313126017|ref|YP_004036287.1| - 7.2e-20 71.2 0.0 3.8e-19 68.9 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|313126017|ref|YP_004036287.1| - 8.5e-12 44.0 0.0 1.1e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF4198 PF10670.4 gi|313126017|ref|YP_004036287.1| - 0.03 14.3 0.0 0.096 12.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Ribosomal_S11 PF00411.14 gi|313126018|ref|YP_004036288.1| - 2e-44 150.2 0.4 2.3e-44 150.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|313126018|ref|YP_004036288.1| - 0.15 11.4 1.0 0.36 10.2 0.7 1.6 1 1 1 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|313126019|ref|YP_004036289.1| - 6.7e-13 47.8 1.0 1.1e-11 43.9 0.1 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|313126019|ref|YP_004036289.1| - 0.0003 21.1 0.3 0.00086 19.6 0.2 1.7 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|313126020|ref|YP_004036290.1| - 9.8e-35 119.2 2.7 1.2e-34 118.9 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|313126020|ref|YP_004036290.1| - 0.0083 14.7 0.0 0.009 14.5 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.1 gi|313126020|ref|YP_004036290.1| - 0.045 13.9 0.1 0.077 13.1 0.1 1.4 1 1 0 1 1 1 0 Helix-hairpin-helix domain Thioredoxin PF00085.15 gi|313126021|ref|YP_004036291.1| - 1e-14 54.0 0.0 1.2e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|313126021|ref|YP_004036291.1| - 4e-05 23.2 0.0 0.00018 21.0 0.0 1.8 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.1 gi|313126021|ref|YP_004036291.1| - 0.00011 22.3 0.0 0.0038 17.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TrbC_Ftype PF09673.5 gi|313126021|ref|YP_004036291.1| - 0.0016 18.0 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein Thioredoxin_8 PF13905.1 gi|313126021|ref|YP_004036291.1| - 0.0021 18.1 0.0 1.4 9.0 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|313126021|ref|YP_004036291.1| - 0.0039 16.9 0.0 0.0059 16.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|313126021|ref|YP_004036291.1| - 0.0055 16.5 0.0 0.0083 16.0 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|313126021|ref|YP_004036291.1| - 0.0091 16.2 0.0 0.013 15.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.1 gi|313126021|ref|YP_004036291.1| - 0.013 15.0 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin KaiB PF07689.7 gi|313126021|ref|YP_004036291.1| - 0.063 12.7 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 KaiB domain Mob_synth_C PF06463.8 gi|313126022|ref|YP_004036292.1| - 7.5e-31 106.4 0.0 1.3e-30 105.7 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|313126022|ref|YP_004036292.1| - 2.6e-24 86.2 0.0 4.5e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|313126022|ref|YP_004036292.1| - 4.2e-08 33.2 0.0 7.6e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|313126022|ref|YP_004036292.1| - 9.3e-08 32.2 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_C7 PF14522.1 gi|313126022|ref|YP_004036292.1| - 0.049 13.2 0.8 9.5 5.9 0.1 2.3 2 0 0 2 2 2 0 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|313126022|ref|YP_004036292.1| - 0.14 12.1 0.5 10 6.1 0.1 2.2 2 0 0 2 2 2 0 Cytochrome c554 and c-prime ParA PF10609.4 gi|313126023|ref|YP_004036293.1| - 5.2e-35 119.1 0.0 9.1e-35 118.4 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|313126023|ref|YP_004036293.1| - 5.7e-20 71.5 0.0 8.3e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313126023|ref|YP_004036293.1| - 2.8e-09 37.0 0.0 9.2e-08 32.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF59 PF01883.14 gi|313126023|ref|YP_004036293.1| - 1.2e-08 34.8 0.4 2.6e-08 33.7 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF59 MipZ PF09140.6 gi|313126023|ref|YP_004036293.1| - 5.3e-08 32.2 0.0 7.6e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|313126023|ref|YP_004036293.1| - 2.6e-05 23.5 0.0 0.014 14.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|313126023|ref|YP_004036293.1| - 0.00013 21.1 0.0 0.0002 20.5 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|313126023|ref|YP_004036293.1| - 0.0003 19.9 4.4 0.0006 18.9 0.8 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|313126023|ref|YP_004036293.1| - 0.00086 18.9 0.0 0.37 10.3 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|313126023|ref|YP_004036293.1| - 0.0084 15.5 0.0 0.022 14.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|313126023|ref|YP_004036293.1| - 0.18 11.0 0.0 0.27 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313126023|ref|YP_004036293.1| - 0.59 9.9 4.0 16 5.3 0.3 3.0 3 0 0 3 3 3 0 Part of AAA domain DUF4317 PF14199.1 gi|313126024|ref|YP_004036294.1| - 0.099 11.4 0.0 0.11 11.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4317) UDG PF03167.14 gi|313126025|ref|YP_004036295.1| - 1.2e-21 76.7 0.0 1.4e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HlyIII PF03006.15 gi|313126026|ref|YP_004036296.1| - 0.023 14.1 1.3 0.026 13.9 0.9 1.0 1 0 0 1 1 1 0 Haemolysin-III related FUSC PF04632.7 gi|313126026|ref|YP_004036296.1| - 0.064 11.6 7.5 0.067 11.6 5.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF687 PF05095.7 gi|313126026|ref|YP_004036296.1| - 0.087 11.1 0.1 0.082 11.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF687) DUF2809 PF10990.3 gi|313126026|ref|YP_004036296.1| - 0.11 12.9 2.4 0.12 12.8 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) IBV_3C PF03620.8 gi|313126026|ref|YP_004036296.1| - 0.18 11.7 0.6 0.22 11.4 0.4 1.2 1 0 0 1 1 1 0 IBV 3C protein DUF2207 PF09972.4 gi|313126026|ref|YP_004036296.1| - 0.35 9.4 1.3 0.35 9.3 0.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) BPD_transp_2 PF02653.11 gi|313126026|ref|YP_004036296.1| - 0.45 9.4 9.0 0.53 9.2 6.2 1.0 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component VirB3 PF05101.8 gi|313126026|ref|YP_004036296.1| - 0.62 10.0 4.0 0.74 9.8 2.7 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DUF2628 PF10947.3 gi|313126026|ref|YP_004036296.1| - 0.8 9.5 5.8 0.95 9.2 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF4131 PF13567.1 gi|313126026|ref|YP_004036296.1| - 0.82 9.0 4.6 0.77 9.1 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) FA_desaturase PF00487.19 gi|313126026|ref|YP_004036296.1| - 0.86 8.9 3.9 0.89 8.9 2.7 1.1 1 0 0 1 1 1 0 Fatty acid desaturase SdpI PF13630.1 gi|313126026|ref|YP_004036296.1| - 1.4 8.6 4.5 1.7 8.4 3.2 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4191 PF13829.1 gi|313126026|ref|YP_004036296.1| - 1.6 7.8 4.6 1.7 7.7 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF1469 PF07332.6 gi|313126026|ref|YP_004036296.1| - 1.7 8.4 11.3 2.1 8.0 7.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3487 PF11990.3 gi|313126026|ref|YP_004036296.1| - 2.2 7.6 4.7 2.7 7.3 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) IncA PF04156.9 gi|313126026|ref|YP_004036296.1| - 7.9 6.0 7.4 9.1 5.8 5.1 1.1 1 0 0 1 1 1 0 IncA protein DUF2064 PF09837.4 gi|313126027|ref|YP_004036297.1| - 8.6e-07 28.5 0.0 1.9e-06 27.4 0.0 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|313126027|ref|YP_004036297.1| - 0.0047 15.9 0.0 0.37 9.7 0.0 2.1 1 1 0 2 2 2 2 Guanylyl transferase CofC like DUF4024 PF13216.1 gi|313126027|ref|YP_004036297.1| - 0.09 12.5 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4024) AIPR PF10592.4 gi|313126028|ref|YP_004036298.1| - 0.11 11.8 0.1 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 AIPR protein PRK PF00485.13 gi|313126029|ref|YP_004036299.1| - 1.9e-49 167.8 0.0 2.3e-49 167.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|313126029|ref|YP_004036299.1| - 6.6e-08 33.3 0.9 1.5e-07 32.2 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313126029|ref|YP_004036299.1| - 1.4e-07 31.8 0.9 3.1e-07 30.7 0.6 1.6 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|313126029|ref|YP_004036299.1| - 9.4e-06 25.3 0.1 0.0036 16.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|313126029|ref|YP_004036299.1| - 0.00012 21.2 0.0 0.00021 20.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin CoaE PF01121.15 gi|313126029|ref|YP_004036299.1| - 0.00022 20.6 1.4 0.015 14.6 0.1 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase ABC_tran PF00005.22 gi|313126029|ref|YP_004036299.1| - 0.00067 19.9 0.1 0.001 19.3 0.1 1.4 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|313126029|ref|YP_004036299.1| - 0.0031 17.6 0.1 0.0052 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|313126029|ref|YP_004036299.1| - 0.0042 17.0 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain CPT PF07931.7 gi|313126029|ref|YP_004036299.1| - 0.0067 16.0 0.0 0.014 15.0 0.0 1.6 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein CbiA PF01656.18 gi|313126029|ref|YP_004036299.1| - 0.018 14.4 0.0 0.098 12.0 0.0 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.17 gi|313126029|ref|YP_004036299.1| - 0.023 13.5 0.6 0.63 8.8 0.2 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.1 gi|313126029|ref|YP_004036299.1| - 0.026 14.8 0.2 0.059 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|313126029|ref|YP_004036299.1| - 0.027 14.1 0.3 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|313126029|ref|YP_004036299.1| - 0.032 13.1 0.4 0.081 11.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.9 gi|313126029|ref|YP_004036299.1| - 0.037 13.7 1.7 3 7.5 0.2 3.0 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|313126029|ref|YP_004036299.1| - 0.098 12.5 0.0 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Torsin PF06309.6 gi|313126029|ref|YP_004036299.1| - 0.14 12.0 0.1 0.37 10.6 0.0 1.7 1 1 0 1 1 1 0 Torsin AAA_19 PF13245.1 gi|313126029|ref|YP_004036299.1| - 0.14 11.9 0.8 0.35 10.6 0.5 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|313126029|ref|YP_004036299.1| - 0.36 10.6 3.2 0.38 10.5 0.8 1.9 1 1 0 2 2 2 0 Domain of unknown function DUF87 Peripla_BP_6 PF13458.1 gi|313126030|ref|YP_004036300.1| - 9.2e-26 90.9 8.9 2e-20 73.4 1.0 2.5 2 1 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|313126030|ref|YP_004036300.1| - 7.4e-18 64.4 2.1 9.4e-16 57.5 0.5 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|313126030|ref|YP_004036300.1| - 1.6e-05 23.8 0.4 0.00013 20.8 0.2 2.4 2 1 0 2 2 2 1 Periplasmic binding protein domain UCR_Fe-S_N PF10399.4 gi|313126030|ref|YP_004036300.1| - 0.13 11.4 3.3 0.46 9.6 2.3 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PEGSRP PF07623.6 gi|313126030|ref|YP_004036300.1| - 0.15 11.3 2.2 0.51 9.6 1.5 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) GPI-anchored PF10342.4 gi|313126031|ref|YP_004036301.1| - 0.13 12.7 3.5 0.3 11.6 0.1 2.4 2 0 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family ABC_tran PF00005.22 gi|313126032|ref|YP_004036302.1| - 6.1e-32 110.7 0.0 9.1e-32 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126032|ref|YP_004036302.1| - 3.6e-11 43.5 0.0 0.00016 21.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313126032|ref|YP_004036302.1| - 0.0001 21.6 2.4 0.0049 16.1 1.7 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313126032|ref|YP_004036302.1| - 0.00014 21.2 0.1 0.00027 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313126032|ref|YP_004036302.1| - 0.00041 20.7 0.0 0.00054 20.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|313126032|ref|YP_004036302.1| - 0.00043 19.8 0.5 0.0083 15.5 0.2 2.1 2 0 0 2 2 2 1 AAA-like domain MutS_V PF00488.16 gi|313126032|ref|YP_004036302.1| - 0.003 16.9 0.0 0.0046 16.3 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_22 PF13401.1 gi|313126032|ref|YP_004036302.1| - 0.0066 16.5 0.3 0.13 12.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|313126032|ref|YP_004036302.1| - 0.0069 16.2 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|313126032|ref|YP_004036302.1| - 0.013 14.3 0.2 0.019 13.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|313126032|ref|YP_004036302.1| - 0.02 14.8 0.1 0.04 13.8 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|313126032|ref|YP_004036302.1| - 0.021 14.5 0.2 0.036 13.7 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|313126032|ref|YP_004036302.1| - 0.024 14.2 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313126032|ref|YP_004036302.1| - 0.026 13.7 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313126032|ref|YP_004036302.1| - 0.027 14.4 0.0 0.042 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|313126032|ref|YP_004036302.1| - 0.036 13.9 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|313126032|ref|YP_004036302.1| - 0.038 13.3 0.0 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|313126032|ref|YP_004036302.1| - 0.039 12.9 0.0 0.44 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|313126032|ref|YP_004036302.1| - 0.06 14.1 0.1 0.13 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313126032|ref|YP_004036302.1| - 0.071 12.2 0.1 0.2 10.8 0.0 1.6 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|313126032|ref|YP_004036302.1| - 0.074 13.2 0.3 0.28 11.4 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|313126032|ref|YP_004036302.1| - 0.075 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|313126032|ref|YP_004036302.1| - 0.1 12.5 2.4 0.64 9.9 1.7 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|313126032|ref|YP_004036302.1| - 0.11 12.9 0.1 0.26 11.8 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein RNA_helicase PF00910.17 gi|313126032|ref|YP_004036302.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|313126033|ref|YP_004036303.1| - 1.2e-31 109.7 0.0 1.7e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126033|ref|YP_004036303.1| - 1e-13 51.8 3.0 3.4e-08 33.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|313126033|ref|YP_004036303.1| - 2.2e-10 39.9 0.1 4.5e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|313126033|ref|YP_004036303.1| - 4.6e-06 27.1 0.0 6.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313126033|ref|YP_004036303.1| - 5.8e-06 25.7 0.4 1.1e-05 24.8 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313126033|ref|YP_004036303.1| - 0.00093 18.4 0.6 0.057 12.6 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MukB PF04310.7 gi|313126033|ref|YP_004036303.1| - 0.0023 17.2 0.2 0.0037 16.6 0.1 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA PF00004.24 gi|313126033|ref|YP_004036303.1| - 0.0059 16.8 0.1 0.14 12.3 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313126033|ref|YP_004036303.1| - 0.0074 15.7 0.4 1.2 8.5 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain DUF258 PF03193.11 gi|313126033|ref|YP_004036303.1| - 0.04 13.1 0.0 0.081 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|313126033|ref|YP_004036303.1| - 0.057 12.4 0.0 0.099 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.18 gi|313126033|ref|YP_004036303.1| - 0.13 12.2 0.2 0.22 11.4 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|313126033|ref|YP_004036303.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|313126034|ref|YP_004036304.1| - 6.2e-41 140.1 30.0 6.2e-41 140.1 20.8 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DAP10 PF07213.6 gi|313126034|ref|YP_004036304.1| - 0.033 13.9 0.9 0.12 12.1 0.6 2.0 1 0 0 1 1 1 0 DAP10 membrane protein DUF4271 PF14093.1 gi|313126034|ref|YP_004036304.1| - 0.16 11.5 0.1 0.16 11.5 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4271) BPD_transp_2 PF02653.11 gi|313126035|ref|YP_004036305.1| - 4.7e-34 117.5 45.2 4.7e-34 117.5 31.3 1.8 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Acetyltransf_1 PF00583.19 gi|313126036|ref|YP_004036306.1| - 1.3e-18 66.7 0.3 2.1e-18 66.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313126036|ref|YP_004036306.1| - 5.7e-15 55.2 0.0 8.7e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313126036|ref|YP_004036306.1| - 8.7e-15 54.8 0.2 1.2e-14 54.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313126036|ref|YP_004036306.1| - 2.6e-09 36.6 0.3 9.5e-09 34.9 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|313126036|ref|YP_004036306.1| - 1.8e-07 31.0 0.2 2.5e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313126036|ref|YP_004036306.1| - 6.2e-07 29.4 0.0 6.7e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313126036|ref|YP_004036306.1| - 4.1e-05 23.5 0.1 4.9e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|313126036|ref|YP_004036306.1| - 4.3e-05 23.1 0.1 7.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313126036|ref|YP_004036306.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|313126036|ref|YP_004036306.1| - 0.0016 18.6 0.0 0.0019 18.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|313126036|ref|YP_004036306.1| - 0.05 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase DICT PF10069.4 gi|313126037|ref|YP_004036307.1| - 1.3e-20 73.2 0.0 2.1e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems AAA_33 PF13671.1 gi|313126039|ref|YP_004036309.1| - 2.8e-27 95.3 0.1 2.8e-27 95.3 0.0 1.5 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|313126039|ref|YP_004036309.1| - 8.7e-09 34.7 0.3 1.2e-07 31.0 0.2 2.0 1 1 0 1 1 1 1 Zeta toxin KTI12 PF08433.5 gi|313126039|ref|YP_004036309.1| - 4.2e-08 32.7 0.0 5.7e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|313126039|ref|YP_004036309.1| - 4.2e-08 33.5 0.2 9.7e-08 32.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313126039|ref|YP_004036309.1| - 4.8e-07 30.6 1.4 1e-06 29.5 1.0 1.6 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|313126039|ref|YP_004036309.1| - 1.5e-05 24.2 1.7 0.023 13.7 0.7 2.2 1 1 0 2 2 2 2 6-phosphofructo-2-kinase AAA_16 PF13191.1 gi|313126039|ref|YP_004036309.1| - 5.3e-05 23.2 0.2 6.8e-05 22.9 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126039|ref|YP_004036309.1| - 0.00019 21.5 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313126039|ref|YP_004036309.1| - 0.0051 17.0 0.0 0.0086 16.2 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|313126039|ref|YP_004036309.1| - 0.028 14.1 0.1 0.079 12.7 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain APS_kinase PF01583.15 gi|313126039|ref|YP_004036309.1| - 0.035 13.7 0.1 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.9 gi|313126039|ref|YP_004036309.1| - 0.078 12.7 0.0 0.15 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CPT PF07931.7 gi|313126039|ref|YP_004036309.1| - 0.1 12.2 0.4 0.19 11.3 0.3 1.7 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein BRE1 PF08647.6 gi|313126041|ref|YP_004036311.1| - 0.043 13.7 2.3 0.079 12.9 1.6 1.5 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase Fmp27_WPPW PF10359.4 gi|313126041|ref|YP_004036311.1| - 0.14 10.4 1.5 0.21 9.9 1.1 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Mnd1 PF03962.10 gi|313126041|ref|YP_004036311.1| - 0.18 11.4 7.2 0.31 10.6 5.0 1.3 1 0 0 1 1 1 0 Mnd1 family DUF2968 PF11180.3 gi|313126041|ref|YP_004036311.1| - 0.2 10.9 13.2 0.35 10.2 8.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) CCDC-167 PF15188.1 gi|313126041|ref|YP_004036311.1| - 0.56 10.1 3.2 0.66 9.9 1.3 1.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 GvpG PF05120.7 gi|313126041|ref|YP_004036311.1| - 1.6 8.6 5.4 2 8.2 2.6 1.9 2 0 0 2 2 2 0 Gas vesicle protein G FUSC PF04632.7 gi|313126041|ref|YP_004036311.1| - 1.9 6.8 4.9 2.8 6.2 3.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3450 PF11932.3 gi|313126041|ref|YP_004036311.1| - 7.6 5.7 14.0 19 4.4 9.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) MarR_2 PF12802.2 gi|313126042|ref|YP_004036312.1| - 0.0063 16.1 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313126042|ref|YP_004036312.1| - 0.012 14.9 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DZR PF12773.2 gi|313126043|ref|YP_004036313.1| - 0.0041 16.8 0.3 0.0059 16.3 0.2 1.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313126043|ref|YP_004036313.1| - 0.0051 15.9 0.9 0.96 8.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|313126043|ref|YP_004036313.1| - 0.014 15.1 0.9 1.7 8.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|313126043|ref|YP_004036313.1| - 0.022 14.4 2.3 0.12 12.0 1.6 2.0 1 1 0 1 1 1 0 Nudix N-terminal Fer2_4 PF13510.1 gi|313126043|ref|YP_004036313.1| - 0.12 12.2 0.4 0.14 11.9 0.3 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain zf-NADH-PPase PF09297.6 gi|313126043|ref|YP_004036313.1| - 0.28 10.7 4.4 1.4 8.4 0.1 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|313126043|ref|YP_004036313.1| - 1.1 9.1 4.3 3.5 7.4 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313126043|ref|YP_004036313.1| - 1.4 8.9 5.6 20 5.2 3.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain NADH-G_4Fe-4S_3 PF10588.4 gi|313126043|ref|YP_004036313.1| - 8.4 5.7 5.9 0.37 10.0 0.4 1.5 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TrmB PF01978.14 gi|313126044|ref|YP_004036314.1| - 1.2e-05 24.9 0.1 1.6e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313126044|ref|YP_004036314.1| - 0.02 14.7 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|313126044|ref|YP_004036314.1| - 0.075 12.8 0.0 0.09 12.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix PadR PF03551.9 gi|313126044|ref|YP_004036314.1| - 0.078 12.7 0.1 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313126044|ref|YP_004036314.1| - 0.13 12.5 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|313126044|ref|YP_004036314.1| - 0.14 11.9 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain UbiA PF01040.13 gi|313126045|ref|YP_004036315.1| - 1.6e-18 66.9 30.5 1.7e-18 66.7 20.4 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family FAD_binding_2 PF00890.19 gi|313126046|ref|YP_004036316.1| - 7.7e-125 416.9 4.4 7.7e-125 416.9 3.0 1.5 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|313126046|ref|YP_004036316.1| - 1.1e-40 138.4 1.5 1.8e-40 137.7 1.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|313126046|ref|YP_004036316.1| - 8.2e-10 38.8 7.2 1.3e-07 31.7 5.0 3.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313126046|ref|YP_004036316.1| - 4.7e-08 32.3 6.6 2e-07 30.2 1.6 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313126046|ref|YP_004036316.1| - 0.00027 19.5 1.5 0.00027 19.5 1.1 1.9 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|313126046|ref|YP_004036316.1| - 0.00047 19.1 3.1 0.00063 18.7 1.4 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|313126046|ref|YP_004036316.1| - 0.0011 18.1 4.1 0.0033 16.5 0.3 3.0 4 0 0 4 4 4 1 Thi4 family FAD_oxidored PF12831.2 gi|313126046|ref|YP_004036316.1| - 0.0018 17.4 8.0 0.0056 15.7 5.5 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|313126046|ref|YP_004036316.1| - 0.003 17.1 0.1 0.0062 16.1 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|313126046|ref|YP_004036316.1| - 0.0061 15.6 1.0 0.013 14.5 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|313126046|ref|YP_004036316.1| - 0.015 15.5 0.4 0.053 13.7 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|313126046|ref|YP_004036316.1| - 0.052 13.6 1.3 0.14 12.2 0.9 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313126046|ref|YP_004036316.1| - 0.073 13.4 1.9 0.22 11.9 0.7 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313126046|ref|YP_004036316.1| - 1.3 9.1 5.4 0.22 11.5 0.4 2.4 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain Fer2_3 PF13085.1 gi|313126047|ref|YP_004036317.1| - 1e-32 112.2 0.1 7.9e-32 109.3 0.0 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|313126047|ref|YP_004036317.1| - 6.7e-11 42.0 4.8 6.7e-11 42.0 3.4 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313126047|ref|YP_004036317.1| - 2.2e-07 31.1 0.2 8.2e-07 29.3 0.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313126047|ref|YP_004036317.1| - 3.9e-06 27.0 3.8 4.9e-06 26.7 1.2 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313126047|ref|YP_004036317.1| - 1.1e-05 25.0 6.2 2.9e-05 23.7 4.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|313126047|ref|YP_004036317.1| - 3.1e-05 24.2 5.8 3.1e-05 24.2 4.0 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313126047|ref|YP_004036317.1| - 0.0002 21.7 12.0 0.009 16.4 0.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313126047|ref|YP_004036317.1| - 0.012 15.5 1.1 0.012 15.5 0.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|313126047|ref|YP_004036317.1| - 0.012 16.3 7.4 0.16 12.7 0.5 3.1 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|313126047|ref|YP_004036317.1| - 0.034 13.7 6.5 0.48 10.0 0.3 2.6 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF3043 PF11241.3 gi|313126047|ref|YP_004036317.1| - 0.06 12.9 5.3 0.17 11.4 3.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) YtkA PF13115.1 gi|313126047|ref|YP_004036317.1| - 0.06 13.7 2.8 0.09 13.1 0.0 2.5 3 1 1 4 4 4 0 YtkA-like Fer4_6 PF12837.2 gi|313126047|ref|YP_004036317.1| - 0.63 10.0 9.9 0.6 10.0 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|313126047|ref|YP_004036317.1| - 1.9 8.2 9.7 5.3 6.7 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313126047|ref|YP_004036317.1| - 7.3 6.5 9.6 1.2e+02 2.6 6.7 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|313126047|ref|YP_004036317.1| - 8 7.0 13.2 0.89 10.0 1.0 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|313126048|ref|YP_004036318.1| - 5.7e-10 39.0 9.6 7.4e-10 38.7 6.6 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DctQ PF04290.7 gi|313126048|ref|YP_004036318.1| - 0.81 9.4 9.8 0.33 10.7 4.1 1.8 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component CopD PF05425.8 gi|313126048|ref|YP_004036318.1| - 3.3 7.9 11.2 0.27 11.4 1.8 2.1 1 1 1 2 2 2 0 Copper resistance protein D DUF1029 PF06269.7 gi|313126048|ref|YP_004036318.1| - 6.6 6.8 9.6 2.2 8.3 4.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1029) Sdh_cyt PF01127.17 gi|313126049|ref|YP_004036319.1| - 3.1e-23 81.8 5.8 3.5e-23 81.7 4.0 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PgaD PF13994.1 gi|313126049|ref|YP_004036319.1| - 0.023 14.2 4.0 0.034 13.6 2.8 1.2 1 0 0 1 1 1 0 PgaD-like protein Ferric_reduct PF01794.14 gi|313126049|ref|YP_004036319.1| - 0.068 13.2 6.6 0.092 12.8 4.6 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component AstE_AspA PF04952.9 gi|313126050|ref|YP_004036320.1| - 2.2e-64 217.1 0.0 2.8e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family RimK PF08443.6 gi|313126051|ref|YP_004036321.1| - 3.2e-27 95.2 0.0 4.9e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|313126051|ref|YP_004036321.1| - 4.1e-08 32.9 0.3 2.4e-06 27.2 0.0 2.3 1 1 1 2 2 2 1 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|313126051|ref|YP_004036321.1| - 5.7e-08 32.0 0.0 1.2e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|313126051|ref|YP_004036321.1| - 1.4e-05 25.0 0.0 6.6e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain Asp_protease_2 PF13650.1 gi|313126051|ref|YP_004036321.1| - 0.002 18.6 0.5 0.0051 17.2 0.4 1.7 1 0 0 1 1 1 1 Aspartyl protease CP_ATPgrasp_1 PF04174.8 gi|313126051|ref|YP_004036321.1| - 0.002 16.7 0.0 0.0043 15.7 0.0 1.4 1 0 0 1 1 1 1 A circularly permuted ATPgrasp ATP-grasp_4 PF13535.1 gi|313126051|ref|YP_004036321.1| - 0.0022 17.7 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain gag-asp_proteas PF13975.1 gi|313126051|ref|YP_004036321.1| - 0.022 14.5 0.1 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|313126051|ref|YP_004036321.1| - 0.029 14.2 0.0 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 Retroviral aspartyl protease HhH-GPD PF00730.20 gi|313126052|ref|YP_004036322.1| - 4.4e-21 75.1 0.1 5.7e-21 74.8 0.1 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein 3HCDH_N PF02737.13 gi|313126053|ref|YP_004036323.1| - 5.9e-66 221.5 0.6 1.2e-65 220.5 0.4 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|313126053|ref|YP_004036323.1| - 4.1e-63 212.7 0.0 6.1e-63 212.1 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|313126053|ref|YP_004036323.1| - 2e-47 159.5 2.1 1.1e-32 112.2 0.0 3.5 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|313126053|ref|YP_004036323.1| - 1.5e-09 37.7 0.1 2.9e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|313126053|ref|YP_004036323.1| - 4.7e-05 23.2 0.1 0.00013 21.8 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|313126053|ref|YP_004036323.1| - 0.00041 20.7 3.6 0.0051 17.2 2.5 2.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|313126053|ref|YP_004036323.1| - 0.01 15.2 0.1 0.017 14.5 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|313126053|ref|YP_004036323.1| - 0.025 14.1 0.2 0.052 13.1 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DFP PF04127.10 gi|313126053|ref|YP_004036323.1| - 0.064 12.8 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein 2-Hacid_dh_C PF02826.14 gi|313126053|ref|YP_004036323.1| - 0.25 10.4 1.6 7.1 5.7 1.1 2.3 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Phage_integrase PF00589.17 gi|313126054|ref|YP_004036324.1| - 5.1e-16 58.8 0.2 1.2e-15 57.5 0.1 1.6 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|313126054|ref|YP_004036324.1| - 0.0017 18.4 2.1 0.031 14.4 0.0 2.9 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Malate_DH PF12434.3 gi|313126054|ref|YP_004036324.1| - 0.0056 16.3 0.1 0.018 14.7 0.1 1.9 1 0 0 1 1 1 1 Malate dehydrogenase enzyme Phage_int_SAM_4 PF13495.1 gi|313126054|ref|YP_004036324.1| - 0.047 14.0 0.2 0.32 11.3 0.0 2.5 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|313126055|ref|YP_004036325.1| - 1.3e-13 50.9 0.1 2.3e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family AsiA PF09010.5 gi|313126055|ref|YP_004036325.1| - 0.03 14.1 0.0 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Anti-Sigma Factor A N6_Mtase PF02384.11 gi|313126057|ref|YP_004036327.1| - 3.4e-10 39.4 0.0 5.5e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|313126057|ref|YP_004036327.1| - 2.8e-09 37.0 0.0 7.4e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|313126057|ref|YP_004036327.1| - 5.5e-05 23.4 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|313126057|ref|YP_004036327.1| - 0.031 13.6 0.0 0.059 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|313126057|ref|YP_004036327.1| - 0.042 13.4 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UvrD-helicase PF00580.16 gi|313126059|ref|YP_004036329.1| - 3.9e-55 187.3 0.0 2.9e-26 92.5 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|313126059|ref|YP_004036329.1| - 7e-35 121.1 0.0 1.4e-34 120.1 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|313126059|ref|YP_004036329.1| - 1.9e-32 112.6 3.2 1.9e-32 112.6 2.2 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|313126059|ref|YP_004036329.1| - 3.2e-10 39.5 0.0 9.8e-10 38.0 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|313126059|ref|YP_004036329.1| - 6e-07 29.5 0.0 5.4e-06 26.4 0.0 2.5 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|313126059|ref|YP_004036329.1| - 4.3e-05 23.1 0.0 0.00039 20.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain Gelsolin PF00626.17 gi|313126059|ref|YP_004036329.1| - 0.036 13.7 0.0 0.099 12.3 0.0 1.7 1 0 0 1 1 1 0 Gelsolin repeat DUF2800 PF10926.3 gi|313126059|ref|YP_004036329.1| - 0.04 13.0 0.1 0.095 11.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2800) Spc7 PF08317.6 gi|313126059|ref|YP_004036329.1| - 0.18 10.3 0.0 0.31 9.6 0.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein PDDEXK_1 PF12705.2 gi|313126060|ref|YP_004036330.1| - 3e-37 128.4 0.4 3.5e-37 128.1 0.3 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2800 PF10926.3 gi|313126060|ref|YP_004036330.1| - 0.041 13.0 0.0 0.096 11.7 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2800) Cas_Cas4 PF01930.12 gi|313126060|ref|YP_004036330.1| - 0.12 12.3 0.1 4 7.3 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF83 UvrD_C PF13361.1 gi|313126061|ref|YP_004036331.1| - 2.3e-07 30.6 0.0 1e-06 28.5 0.0 1.9 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PLDc_2 PF13091.1 gi|313126062|ref|YP_004036332.1| - 1.5e-10 40.8 0.0 3.5e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 PLD-like domain Tyr-DNA_phospho PF06087.7 gi|313126062|ref|YP_004036332.1| - 2.6e-05 23.0 0.1 4e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Tyrosyl-DNA phosphodiesterase DAP_epimerase PF01678.14 gi|313126062|ref|YP_004036332.1| - 0.061 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Diaminopimelate epimerase Piwi PF02171.12 gi|313126063|ref|YP_004036333.1| - 1.4e-18 66.9 0.0 3.1e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 Piwi domain DUF2121 PF09894.4 gi|313126063|ref|YP_004036333.1| - 0.13 11.4 0.0 2.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2121) AAA_14 PF13173.1 gi|313126064|ref|YP_004036334.1| - 3e-10 40.0 0.0 1.2e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|313126064|ref|YP_004036334.1| - 2.7e-07 30.1 0.1 2.5e-06 27.0 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|313126064|ref|YP_004036334.1| - 2e-05 24.7 0.1 5.9e-05 23.2 0.1 1.8 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|313126064|ref|YP_004036334.1| - 0.00086 19.0 0.0 0.0021 17.7 0.0 1.6 1 0 0 1 1 1 1 NACHT domain RNA_helicase PF00910.17 gi|313126064|ref|YP_004036334.1| - 0.0011 19.1 0.1 0.012 15.7 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_16 PF13191.1 gi|313126064|ref|YP_004036334.1| - 0.0019 18.2 0.4 0.0091 15.9 0.3 2.1 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|313126064|ref|YP_004036334.1| - 0.0039 16.7 0.0 0.0072 15.8 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA PF00004.24 gi|313126064|ref|YP_004036334.1| - 0.0098 16.0 0.0 0.029 14.5 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|313126064|ref|YP_004036334.1| - 0.012 15.2 0.1 0.076 12.6 0.1 2.0 1 1 0 1 1 1 0 Archaeal ATPase AAA_23 PF13476.1 gi|313126064|ref|YP_004036334.1| - 0.019 15.3 0.0 0.046 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|313126064|ref|YP_004036334.1| - 0.025 15.0 0.0 0.095 13.2 0.0 2.2 1 1 0 1 1 1 0 Miro-like protein DUF2075 PF09848.4 gi|313126064|ref|YP_004036334.1| - 0.026 13.4 0.0 0.065 12.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|313126064|ref|YP_004036334.1| - 0.028 15.2 0.7 0.11 13.3 0.2 2.2 2 1 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|313126064|ref|YP_004036334.1| - 0.035 14.3 0.0 0.083 13.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|313126064|ref|YP_004036334.1| - 0.059 13.1 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|313126064|ref|YP_004036334.1| - 0.06 12.2 0.1 0.14 10.9 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain DUF258 PF03193.11 gi|313126064|ref|YP_004036334.1| - 0.077 12.1 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|313126064|ref|YP_004036334.1| - 0.15 11.7 0.1 0.33 10.6 0.1 1.6 1 0 0 1 1 1 0 NTPase DUF3883 PF13020.1 gi|313126065|ref|YP_004036335.1| - 0.0003 20.4 0.0 0.001 18.7 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) HATPase_c PF02518.21 gi|313126065|ref|YP_004036335.1| - 0.003 17.2 0.0 0.011 15.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Mrr_cat PF04471.7 gi|313126067|ref|YP_004036337.1| - 4.5e-10 39.3 0.0 8.5e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease RE_HindIII PF09518.5 gi|313126067|ref|YP_004036337.1| - 0.17 10.7 0.0 0.47 9.3 0.0 1.7 1 1 0 1 1 1 0 HindIII restriction endonuclease HJURP_C PF12347.3 gi|313126068|ref|YP_004036338.1| - 0.056 13.0 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat AAA_27 PF13514.1 gi|313126069|ref|YP_004036339.1| - 2e-22 78.8 41.1 2e-22 78.8 28.5 3.4 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|313126069|ref|YP_004036339.1| - 1.8e-10 41.4 0.0 1.8e-10 41.4 0.0 4.2 2 2 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|313126069|ref|YP_004036339.1| - 9.9e-08 31.4 0.0 0.003 16.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|313126069|ref|YP_004036339.1| - 3.8e-07 30.3 0.0 0.00039 20.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|313126069|ref|YP_004036339.1| - 7e-05 21.5 20.7 0.00041 18.9 0.0 3.7 2 2 0 3 3 3 2 AAA domain Terminase_4 PF05119.7 gi|313126069|ref|YP_004036339.1| - 0.025 14.7 1.8 0.26 11.4 0.0 3.1 2 1 0 2 2 2 0 Phage terminase, small subunit ABC_tran PF00005.22 gi|313126069|ref|YP_004036339.1| - 0.027 14.7 0.2 2.5 8.3 0.0 3.3 2 1 0 2 2 2 0 ABC transporter AAA_29 PF13555.1 gi|313126069|ref|YP_004036339.1| - 0.029 13.8 0.0 0.065 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Metallophos_2 PF12850.2 gi|313126070|ref|YP_004036340.1| - 3.8e-15 56.0 0.0 8.6e-15 54.9 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313126070|ref|YP_004036340.1| - 5.2e-10 39.0 0.2 1.8e-09 37.3 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF1317 PF07026.6 gi|313126070|ref|YP_004036340.1| - 0.04 13.8 0.0 0.091 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1317) DIE2_ALG10 PF04922.7 gi|313126071|ref|YP_004036341.1| - 0.013 14.5 0.1 0.019 14.0 0.1 1.1 1 0 0 1 1 1 0 DIE2/ALG10 family ALMT PF11744.3 gi|313126071|ref|YP_004036341.1| - 0.021 13.5 0.2 0.037 12.7 0.2 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter UPF0167 PF03691.9 gi|313126071|ref|YP_004036341.1| - 0.025 14.0 0.6 0.047 13.0 0.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) DUF2789 PF10982.3 gi|313126071|ref|YP_004036341.1| - 0.098 12.6 0.8 2.6 8.0 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2789) PIP49_N PF14875.1 gi|313126071|ref|YP_004036341.1| - 0.19 11.4 2.2 0.26 10.9 0.6 1.9 2 0 0 2 2 2 0 N-term cysteine-rich ER, FAM69 DivIVA PF05103.8 gi|313126071|ref|YP_004036341.1| - 1.2 9.1 5.8 0.29 11.1 0.9 2.1 3 0 0 3 3 3 0 DivIVA protein HNH_2 PF13391.1 gi|313126072|ref|YP_004036342.1| - 9e-11 41.3 0.1 1.7e-10 40.4 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease HTH_45 PF14947.1 gi|313126072|ref|YP_004036342.1| - 0.00023 20.8 0.0 0.0041 16.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|313126072|ref|YP_004036342.1| - 0.018 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Transcription factor MotA, activation domain TOBE_2 PF08402.5 gi|313126073|ref|YP_004036343.1| - 0.0097 15.8 0.6 0.22 11.5 0.2 2.0 2 0 0 2 2 2 1 TOBE domain Ribosomal_L21e PF01157.13 gi|313126073|ref|YP_004036343.1| - 0.11 12.3 0.0 0.3 10.9 0.0 1.7 1 1 1 2 2 2 0 Ribosomal protein L21e Metallophos_2 PF12850.2 gi|313126074|ref|YP_004036344.1| - 5.8e-11 42.4 0.0 7.9e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313126074|ref|YP_004036344.1| - 2.6e-09 36.7 0.0 5.4e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|313126074|ref|YP_004036344.1| - 0.12 11.4 0.2 0.35 10.0 0.1 1.6 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily HATPase_c_3 PF13589.1 gi|313126075|ref|YP_004036345.1| - 3.1e-05 23.6 0.0 0.00011 21.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SNF2_N PF00176.18 gi|313126077|ref|YP_004036347.1| - 1.6e-16 59.9 0.2 1.5e-10 40.3 0.1 2.4 1 1 1 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|313126077|ref|YP_004036347.1| - 9.3e-16 57.4 0.0 2.8e-15 55.9 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PLDc_2 PF13091.1 gi|313126077|ref|YP_004036347.1| - 2.5e-15 56.3 0.0 6.9e-15 54.9 0.0 1.8 1 0 0 1 1 1 1 PLD-like domain ResIII PF04851.10 gi|313126077|ref|YP_004036347.1| - 8e-06 25.8 0.3 0.0027 17.5 0.1 2.6 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit RE_NgoFVII PF09565.5 gi|313126077|ref|YP_004036347.1| - 0.00058 18.9 0.0 0.07 12.0 0.0 2.7 2 0 0 2 2 2 1 NgoFVII restriction endonuclease DUF2075 PF09848.4 gi|313126077|ref|YP_004036347.1| - 0.0028 16.7 0.0 0.0048 15.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|313126077|ref|YP_004036347.1| - 0.045 13.2 0.9 4.6 6.7 0.0 3.3 2 1 0 3 3 3 0 DEAD/DEAH box helicase TBP PF00352.16 gi|313126078|ref|YP_004036348.1| - 3.6e-25 87.1 0.0 2.1e-17 62.2 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|313126078|ref|YP_004036348.1| - 0.035 14.1 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3378) NLE PF08154.7 gi|313126078|ref|YP_004036348.1| - 0.047 13.7 0.0 0.24 11.4 0.0 2.0 2 0 0 2 2 2 0 NLE (NUC135) domain Eco57I PF07669.6 gi|313126079|ref|YP_004036349.1| - 4.2e-14 52.7 1.0 2.6e-12 47.0 1.0 3.1 2 1 0 2 2 2 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|313126079|ref|YP_004036349.1| - 6.5e-13 48.7 0.0 2.9e-12 46.6 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|313126079|ref|YP_004036349.1| - 2.9e-12 46.2 0.0 0.00021 20.4 0.0 3.9 3 1 0 3 3 3 3 N-6 DNA Methylase UPF0020 PF01170.13 gi|313126079|ref|YP_004036349.1| - 2.8e-05 23.7 0.0 0.011 15.2 0.0 3.1 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 TaqI_C PF12950.2 gi|313126079|ref|YP_004036349.1| - 0.00022 20.9 0.0 0.00057 19.6 0.0 1.7 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain CDI PF02234.14 gi|313126079|ref|YP_004036349.1| - 0.087 12.6 0.1 0.087 12.6 0.0 2.6 3 0 0 3 3 3 0 Cyclin-dependent kinase inhibitor HTH_11 PF08279.7 gi|313126080|ref|YP_004036350.1| - 7.2e-05 22.3 0.0 8.9e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313126080|ref|YP_004036350.1| - 9.4e-05 22.0 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|313126080|ref|YP_004036350.1| - 0.00024 20.6 0.0 0.00029 20.3 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_CodY PF08222.6 gi|313126080|ref|YP_004036350.1| - 0.00031 20.0 0.1 0.00046 19.4 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_20 PF12840.2 gi|313126080|ref|YP_004036350.1| - 0.00033 20.3 0.0 0.00039 20.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313126080|ref|YP_004036350.1| - 0.0012 18.2 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313126080|ref|YP_004036350.1| - 0.0027 17.2 0.0 0.004 16.6 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FaeA PF04703.7 gi|313126080|ref|YP_004036350.1| - 0.0037 17.3 0.0 0.0043 17.1 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_23 PF13384.1 gi|313126080|ref|YP_004036350.1| - 0.006 16.2 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|313126080|ref|YP_004036350.1| - 0.0069 16.3 0.0 0.0087 16.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|313126080|ref|YP_004036350.1| - 0.021 14.9 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|313126080|ref|YP_004036350.1| - 0.048 13.4 0.1 0.061 13.1 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SgrR_N PF12793.2 gi|313126080|ref|YP_004036350.1| - 0.087 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term RNase_H_2 PF13482.1 gi|313126085|ref|YP_004036355.1| - 2.2e-06 27.5 0.0 0.00025 20.8 0.0 2.6 1 1 0 1 1 1 1 RNase_H superfamily DUF1676 PF07898.8 gi|313126085|ref|YP_004036355.1| - 0.011 16.0 0.1 0.22 11.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1676) HNH PF01844.18 gi|313126086|ref|YP_004036356.1| - 1.3e-10 40.9 3.5 1.5e-10 40.8 1.7 1.7 2 0 0 2 2 2 1 HNH endonuclease PHD PF00628.24 gi|313126086|ref|YP_004036356.1| - 0.016 14.9 2.3 0.033 13.8 0.1 2.2 2 0 0 2 2 2 0 PHD-finger HNH_2 PF13391.1 gi|313126086|ref|YP_004036356.1| - 0.023 14.4 0.2 0.068 12.9 0.2 1.8 1 0 0 1 1 1 0 HNH endonuclease Glycolipid_bind PF06475.6 gi|313126088|ref|YP_004036358.1| - 0.051 12.7 0.0 0.096 11.8 0.0 1.4 1 1 0 1 1 1 0 Putative glycolipid-binding HHH PF00633.18 gi|313126089|ref|YP_004036359.1| - 0.0038 16.8 0.0 0.007 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Transposase_20 PF02371.11 gi|313126089|ref|YP_004036359.1| - 0.071 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Helicase_IV_N PF12462.3 gi|313126089|ref|YP_004036359.1| - 0.073 12.7 0.2 0.099 12.2 0.2 1.2 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal HHH_2 PF12826.2 gi|313126089|ref|YP_004036359.1| - 0.15 11.9 0.0 0.35 10.7 0.0 1.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif CBS PF00571.23 gi|313126090|ref|YP_004036360.1| - 7.5e-09 35.2 0.0 6.6e-05 22.6 0.0 2.6 2 1 0 2 2 2 2 CBS domain AdoMet_Synthase PF01941.14 gi|313126090|ref|YP_004036360.1| - 0.046 12.2 0.0 0.057 11.9 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) HBS1_N PF08938.5 gi|313126092|ref|YP_004036362.1| - 0.37 10.9 1.8 0.52 10.4 1.2 1.5 1 1 0 1 1 1 0 HBS1 N-terminus ADP_ribosyl_GH PF03747.9 gi|313126093|ref|YP_004036363.1| - 1.5e-70 238.2 3.9 1.8e-70 238.0 2.7 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_YMGG PF13441.1 gi|313126093|ref|YP_004036363.1| - 0.085 12.3 5.2 0.29 10.6 2.9 2.2 2 0 0 2 2 2 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|313126093|ref|YP_004036363.1| - 0.53 10.0 7.8 0.063 12.9 2.2 2.0 2 0 0 2 2 2 0 Glycine zipper 2TM domain HEAT_2 PF13646.1 gi|313126094|ref|YP_004036364.1| - 1.5e-14 54.0 30.0 2.1e-07 31.1 2.0 5.0 1 1 4 5 5 5 4 HEAT repeats HEAT_EZ PF13513.1 gi|313126094|ref|YP_004036364.1| - 3.4e-12 46.4 7.7 1.7e-06 28.3 0.2 7.5 2 2 5 7 7 7 5 HEAT-like repeat Adaptin_N PF01602.15 gi|313126094|ref|YP_004036364.1| - 1.3e-10 40.2 0.0 8.3e-10 37.5 0.0 1.8 1 1 1 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.2 gi|313126094|ref|YP_004036364.1| - 1e-09 38.4 0.0 2.1e-06 27.7 0.0 3.1 3 0 0 3 3 3 2 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.17 gi|313126094|ref|YP_004036364.1| - 2.7e-09 36.3 13.2 0.027 14.5 0.0 6.6 7 0 0 7 7 7 3 HEAT repeat Arm PF00514.18 gi|313126094|ref|YP_004036364.1| - 3.5e-07 29.7 8.9 0.00023 20.8 0.0 5.8 6 0 0 6 6 6 1 Armadillo/beta-catenin-like repeat Cnd3 PF12719.2 gi|313126094|ref|YP_004036364.1| - 0.0021 17.1 0.2 0.0043 16.0 0.1 1.5 1 1 0 1 1 1 1 Nuclear condensing complex subunits, C-term domain UPF0253 PF06786.7 gi|313126094|ref|YP_004036364.1| - 0.02 14.9 3.7 2.2 8.4 0.1 3.3 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0253) CLASP_N PF12348.3 gi|313126094|ref|YP_004036364.1| - 0.023 14.0 0.0 0.057 12.7 0.0 1.6 1 1 0 1 1 1 0 CLASP N terminal DUF3088 PF11287.3 gi|313126094|ref|YP_004036364.1| - 0.047 13.1 0.4 0.66 9.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3088) Cohesin_HEAT PF12765.2 gi|313126094|ref|YP_004036364.1| - 0.95 9.4 6.0 1.6 8.7 0.1 3.6 5 0 0 5 5 5 0 HEAT repeat associated with sister chromatid cohesion HNH_2 PF13391.1 gi|313126095|ref|YP_004036365.1| - 3.4e-11 42.7 0.1 7.3e-11 41.6 0.1 1.6 1 0 0 1 1 1 1 HNH endonuclease HEPN PF05168.9 gi|313126096|ref|YP_004036366.1| - 5e-05 23.1 0.0 6.9e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 HEPN domain TetR_N PF00440.18 gi|313126096|ref|YP_004036366.1| - 0.72 9.5 3.2 21 4.8 0.0 2.9 4 0 0 4 4 4 0 Bacterial regulatory proteins, tetR family NTP_transf_2 PF01909.18 gi|313126097|ref|YP_004036367.1| - 1.3e-10 41.4 0.4 2e-10 40.8 0.3 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_27 PF13463.1 gi|313126097|ref|YP_004036367.1| - 7e-05 23.0 0.0 0.00088 19.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313126097|ref|YP_004036367.1| - 7.1e-05 22.4 0.0 0.00025 20.6 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|313126097|ref|YP_004036367.1| - 0.0015 18.2 0.0 0.0035 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313126097|ref|YP_004036367.1| - 0.0098 15.6 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|313126097|ref|YP_004036367.1| - 0.014 14.8 0.1 0.7 9.3 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|313126097|ref|YP_004036367.1| - 0.059 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Adenyl_cycl_N PF12633.2 gi|313126097|ref|YP_004036367.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain DNA_ligase_ZBD PF03119.11 gi|313126098|ref|YP_004036368.1| - 0.00058 19.5 10.2 0.087 12.5 0.2 3.7 3 0 0 3 3 3 2 NAD-dependent DNA ligase C4 zinc finger domain Spt4 PF06093.8 gi|313126098|ref|YP_004036368.1| - 0.024 14.5 0.5 0.024 14.5 0.4 1.7 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|313126098|ref|YP_004036368.1| - 0.054 13.3 11.3 0.13 12.1 5.7 2.8 2 2 0 2 2 2 0 Double zinc ribbon Opy2 PF09463.5 gi|313126098|ref|YP_004036368.1| - 0.061 13.4 6.2 6.8 6.8 0.1 3.4 2 1 0 2 2 2 0 Opy2 protein zf-C3HC4_3 PF13920.1 gi|313126098|ref|YP_004036368.1| - 0.17 11.5 8.5 0.57 9.9 2.2 2.4 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|313126098|ref|YP_004036368.1| - 0.19 11.3 7.3 1.1 8.9 5.1 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|313126098|ref|YP_004036368.1| - 0.34 10.9 12.4 0.16 11.9 2.6 3.2 2 1 1 3 3 3 0 zinc-finger RNHCP PF12647.2 gi|313126098|ref|YP_004036368.1| - 0.6 9.9 6.6 0.19 11.6 1.0 2.3 1 1 1 2 2 2 0 RNHCP domain zf-RING_5 PF14634.1 gi|313126098|ref|YP_004036368.1| - 1.1 8.9 6.4 8.7 6.1 1.8 2.5 2 0 0 2 2 2 0 zinc-RING finger domain Zn-ribbon_8 PF09723.5 gi|313126098|ref|YP_004036368.1| - 4.5 7.2 17.9 1.3 9.0 3.2 4.1 3 1 2 5 5 5 0 Zinc ribbon domain zf-RING_4 PF14570.1 gi|313126098|ref|YP_004036368.1| - 7.4 6.2 12.5 0.51 9.9 1.9 3.0 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain DDE_Tnp_1 PF01609.16 gi|313126100|ref|YP_004036370.1| - 0.019 14.5 0.0 0.046 13.2 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain SbcCD_C PF13558.1 gi|313126100|ref|YP_004036370.1| - 0.1 12.5 0.5 1.2 9.1 0.0 2.6 3 0 0 3 3 3 0 Putative exonuclease SbcCD, C subunit PorB PF11565.3 gi|313126100|ref|YP_004036370.1| - 0.11 12.7 0.1 0.29 11.3 0.1 1.7 1 0 0 1 1 1 0 Alpha helical Porin B HUN PF08729.5 gi|313126102|ref|YP_004036372.1| - 0.046 13.5 0.6 0.095 12.5 0.0 1.7 2 0 0 2 2 2 0 HPC2 and ubinuclein domain PIN_4 PF13638.1 gi|313126104|ref|YP_004036374.1| - 0.031 14.3 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 PIN domain Cas_Cas02710 PF09670.5 gi|313126105|ref|YP_004036375.1| - 0.00043 19.0 0.0 0.00064 18.4 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|313126105|ref|YP_004036375.1| - 0.0013 18.4 0.0 0.0018 18.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_NE0113 PF09623.5 gi|313126105|ref|YP_004036375.1| - 0.0025 17.3 0.0 0.0041 16.6 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Phage_integrase PF00589.17 gi|313126106|ref|YP_004036376.1| - 6.7e-17 61.6 0.0 1.3e-16 60.7 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|313126106|ref|YP_004036376.1| - 0.00013 21.6 9.3 0.00021 21.0 6.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-FCS PF06467.9 gi|313126106|ref|YP_004036376.1| - 0.24 11.0 2.7 6.1 6.5 0.1 2.6 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF2614 PF11023.3 gi|313126106|ref|YP_004036376.1| - 0.37 10.5 1.4 0.61 9.8 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) zf-ribbon_3 PF13248.1 gi|313126106|ref|YP_004036376.1| - 1.1 8.5 6.8 5.4 6.3 1.1 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|313126106|ref|YP_004036376.1| - 1.1 8.7 5.0 14 5.2 0.3 2.8 1 1 2 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313126106|ref|YP_004036376.1| - 2.9 7.9 7.6 3.4 7.7 0.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DUF4238 PF14022.1 gi|313126107|ref|YP_004036377.1| - 1.3e-48 165.6 0.0 1.8e-48 165.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4238) Arch_ATPase PF01637.13 gi|313126109|ref|YP_004036379.1| - 5.8e-33 114.5 0.0 1.9e-32 112.8 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|313126109|ref|YP_004036379.1| - 5.1e-17 61.8 0.0 1.1e-16 60.7 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|313126109|ref|YP_004036379.1| - 3e-07 30.4 0.0 5.2e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313126109|ref|YP_004036379.1| - 3.4e-07 30.4 0.0 1.5e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313126109|ref|YP_004036379.1| - 3.4e-06 27.1 0.2 1e-05 25.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain HTH_45 PF14947.1 gi|313126109|ref|YP_004036379.1| - 0.0021 17.8 0.0 0.005 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|313126109|ref|YP_004036379.1| - 0.0022 17.4 0.0 0.0046 16.4 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit Miro PF08477.8 gi|313126109|ref|YP_004036379.1| - 0.021 15.2 0.0 0.15 12.5 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein HTH_IclR PF09339.5 gi|313126109|ref|YP_004036379.1| - 0.046 13.3 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Beta-lactamase PF00144.19 gi|313126110|ref|YP_004036380.1| - 2.8e-54 184.3 4.5 4e-54 183.8 3.1 1.2 1 0 0 1 1 1 1 Beta-lactamase DUF3334 PF11813.3 gi|313126111|ref|YP_004036381.1| - 0.01 15.4 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3334) DsbB PF02600.11 gi|313126112|ref|YP_004036382.1| - 4.1e-27 94.8 13.0 7.3e-27 94.0 9.0 1.4 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Xlink PF00193.12 gi|313126112|ref|YP_004036382.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Extracellular link domain TauE PF01925.14 gi|313126113|ref|YP_004036383.1| - 0.00055 19.4 1.1 0.00067 19.1 0.8 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SpoVR PF04293.8 gi|313126114|ref|YP_004036384.1| - 2.3e-83 279.9 7.4 2.7e-71 240.1 1.2 2.1 2 0 0 2 2 2 2 SpoVR like protein DUF444 PF04285.7 gi|313126115|ref|YP_004036385.1| - 4.1e-98 328.7 0.3 4.7e-98 328.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) VWA_2 PF13519.1 gi|313126115|ref|YP_004036385.1| - 0.089 12.8 0.0 1.9 8.5 0.0 2.2 1 1 0 2 2 2 0 von Willebrand factor type A domain AAA_PrkA PF08298.6 gi|313126116|ref|YP_004036386.1| - 4.5e-15 55.2 0.0 1.5e-11 43.6 0.0 3.2 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|313126116|ref|YP_004036386.1| - 5.7e-07 29.0 0.2 3e-06 26.7 0.2 2.1 1 1 0 1 1 1 1 PrkA serine protein kinase C-terminal domain PrkA PF06798.7 gi|313126117|ref|YP_004036387.1| - 7.2e-78 261.3 9.4 7.2e-78 261.3 6.5 1.7 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|313126117|ref|YP_004036387.1| - 1.3e-65 221.4 0.0 2.2e-65 220.7 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_5 PF07728.9 gi|313126117|ref|YP_004036387.1| - 0.028 14.1 1.1 2.4 7.9 0.2 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF2188 PF09954.4 gi|313126118|ref|YP_004036388.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) UPF0179 PF03684.8 gi|313126119|ref|YP_004036389.1| - 6.2e-50 168.4 0.0 6.9e-50 168.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|313126119|ref|YP_004036389.1| - 0.0054 16.7 1.2 0.013 15.5 0.1 1.9 2 0 0 2 2 2 1 Transposase DDE domain AstE_AspA PF04952.9 gi|313126120|ref|YP_004036390.1| - 2.7e-11 42.8 0.0 1.1e-10 40.8 0.0 1.9 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF309 PF03745.9 gi|313126121|ref|YP_004036391.1| - 7.7e-14 50.8 0.3 1.1e-13 50.3 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) COPI_assoc PF08507.5 gi|313126122|ref|YP_004036392.1| - 0.00059 19.5 0.7 0.00064 19.4 0.5 1.0 1 0 0 1 1 1 1 COPI associated protein DsbB PF02600.11 gi|313126122|ref|YP_004036392.1| - 0.73 9.6 4.6 0.85 9.3 3.2 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB IncA PF04156.9 gi|313126122|ref|YP_004036392.1| - 5.6 6.5 6.8 6.9 6.2 4.7 1.1 1 0 0 1 1 1 0 IncA protein Inositol_P PF00459.20 gi|313126125|ref|YP_004036395.1| - 1.4e-48 165.6 3.8 1.7e-48 165.2 2.6 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|313126125|ref|YP_004036395.1| - 0.011 14.6 0.0 0.015 14.1 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase HTH_AsnC-type PF13404.1 gi|313126126|ref|YP_004036396.1| - 1.2e-17 63.1 0.7 2.5e-17 62.1 0.5 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|313126126|ref|YP_004036396.1| - 1.3e-17 63.2 0.1 1.9e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|313126126|ref|YP_004036396.1| - 1.6e-16 59.3 0.0 3.1e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313126126|ref|YP_004036396.1| - 1.3e-07 31.2 0.1 4.2e-06 26.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313126126|ref|YP_004036396.1| - 1.3e-07 31.3 0.0 2.2e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313126126|ref|YP_004036396.1| - 8.1e-06 25.4 0.0 2.2e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|313126126|ref|YP_004036396.1| - 3e-05 23.5 0.0 0.00015 21.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313126126|ref|YP_004036396.1| - 0.00024 20.3 0.6 1.2 8.4 0.0 3.0 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_11 PF08279.7 gi|313126126|ref|YP_004036396.1| - 0.00025 20.6 0.0 0.0005 19.6 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|313126126|ref|YP_004036396.1| - 0.0023 18.1 0.0 0.038 14.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|313126126|ref|YP_004036396.1| - 0.0062 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GYD PF08734.6 gi|313126126|ref|YP_004036396.1| - 0.0075 15.9 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 GYD domain HTH_38 PF13936.1 gi|313126126|ref|YP_004036396.1| - 0.011 15.3 0.1 0.021 14.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313126126|ref|YP_004036396.1| - 0.026 13.9 0.7 0.11 11.9 0.0 2.4 3 1 0 3 3 3 0 Sigma-70, region 4 TrmB PF01978.14 gi|313126126|ref|YP_004036396.1| - 0.038 13.6 0.0 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|313126126|ref|YP_004036396.1| - 0.042 13.0 0.1 0.075 12.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HxlR PF01638.12 gi|313126126|ref|YP_004036396.1| - 0.098 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|313126126|ref|YP_004036396.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|313126126|ref|YP_004036396.1| - 0.15 12.0 0.0 0.37 10.7 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF63 PF01889.12 gi|313126127|ref|YP_004036397.1| - 1.9e-37 129.8 11.3 8.5e-37 127.7 7.0 2.4 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 YcaO PF02624.11 gi|313126128|ref|YP_004036398.1| - 5e-67 226.7 4.9 7.8e-67 226.1 3.4 1.3 1 0 0 1 1 1 1 YcaO-like family SHMT PF00464.14 gi|313126131|ref|YP_004036401.1| - 4.9e-153 509.2 0.0 5.9e-153 508.9 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|313126131|ref|YP_004036401.1| - 1.9e-12 46.8 0.0 3.5e-12 45.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|313126131|ref|YP_004036401.1| - 5.3e-08 32.3 0.0 2.2e-07 30.3 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|313126131|ref|YP_004036401.1| - 0.0021 17.1 1.1 0.0043 16.1 0.8 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Trypsin_2 PF13365.1 gi|313126131|ref|YP_004036401.1| - 0.08 12.9 0.1 0.15 12.0 0.1 1.7 1 1 0 1 1 1 0 Trypsin-like peptidase domain DUF348 PF03990.9 gi|313126131|ref|YP_004036401.1| - 0.34 10.5 2.2 0.45 10.1 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF348) THF_DHG_CYH_C PF02882.14 gi|313126132|ref|YP_004036402.1| - 3e-67 224.6 1.5 4.7e-67 224.0 1.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|313126132|ref|YP_004036402.1| - 4.3e-39 133.1 0.0 6.9e-39 132.5 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ISN1 PF06437.6 gi|313126133|ref|YP_004036403.1| - 0.073 11.7 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 IMP-specific 5'-nucleotidase Prok-RING_1 PF14446.1 gi|313126133|ref|YP_004036403.1| - 0.26 11.0 1.3 0.77 9.5 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|313126133|ref|YP_004036403.1| - 0.34 10.9 0.4 0.34 10.9 0.3 1.8 2 0 0 2 2 2 0 zinc-finger HypA PF01155.14 gi|313126134|ref|YP_004036404.1| - 0.0018 17.9 0.4 0.0029 17.2 0.3 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|313126134|ref|YP_004036404.1| - 0.0094 15.2 1.7 0.026 13.8 1.1 1.8 1 1 0 1 1 1 1 TFIIB zinc-binding DUF1451 PF07295.6 gi|313126134|ref|YP_004036404.1| - 0.016 14.9 1.9 0.086 12.6 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|313126134|ref|YP_004036404.1| - 0.018 14.8 0.3 0.029 14.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313126134|ref|YP_004036404.1| - 0.028 13.6 2.4 0.25 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313126134|ref|YP_004036404.1| - 0.045 13.3 1.5 1.7 8.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S14 PF00253.16 gi|313126134|ref|YP_004036404.1| - 0.047 13.0 0.7 0.14 11.5 0.5 1.7 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e Zn_Tnp_IS1595 PF12760.2 gi|313126134|ref|YP_004036404.1| - 0.077 12.8 5.9 2.9 7.7 0.1 2.6 1 1 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313126134|ref|YP_004036404.1| - 0.078 12.9 2.7 0.26 11.2 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain BRK PF07533.11 gi|313126134|ref|YP_004036404.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 BRK domain UPF0547 PF10571.4 gi|313126134|ref|YP_004036404.1| - 0.11 12.2 3.7 0.44 10.2 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|313126134|ref|YP_004036404.1| - 0.22 11.2 2.6 2.7 7.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain FdhE PF04216.7 gi|313126134|ref|YP_004036404.1| - 0.43 10.2 2.3 0.39 10.4 0.4 1.7 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation TFIIS_C PF01096.13 gi|313126134|ref|YP_004036404.1| - 3.6 7.2 6.8 6.3 6.5 0.9 2.8 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) MutS_IV PF05190.13 gi|313126135|ref|YP_004036405.1| - 0.031 14.4 0.3 0.037 14.1 0.2 1.1 1 0 0 1 1 1 0 MutS family domain IV PadR PF03551.9 gi|313126136|ref|YP_004036406.1| - 6e-17 61.1 2.4 7.6e-17 60.8 1.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313126136|ref|YP_004036406.1| - 0.00011 22.4 0.1 0.00014 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|313126136|ref|YP_004036406.1| - 0.0032 17.0 0.0 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|313126136|ref|YP_004036406.1| - 0.0035 17.1 0.1 0.0051 16.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|313126136|ref|YP_004036406.1| - 0.014 15.3 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313126136|ref|YP_004036406.1| - 0.023 14.3 0.3 1 9.0 0.1 2.2 2 0 0 2 2 2 0 MarR family DUF4364 PF14277.1 gi|313126136|ref|YP_004036406.1| - 0.079 12.5 0.0 0.12 12.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) HemN_C PF06969.11 gi|313126136|ref|YP_004036406.1| - 0.092 12.8 0.1 0.17 11.9 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain DUF658 PF04936.7 gi|313126136|ref|YP_004036406.1| - 0.096 12.5 0.2 0.11 12.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF658) UPF0118 PF01594.11 gi|313126137|ref|YP_004036407.1| - 1e-35 123.3 27.7 1.3e-35 122.9 19.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF4010 PF13194.1 gi|313126138|ref|YP_004036408.1| - 1.1e-49 168.6 24.6 1.1e-49 168.6 17.1 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|313126138|ref|YP_004036408.1| - 3.1e-14 52.9 10.5 3.1e-14 52.9 7.3 3.5 3 1 0 3 3 3 2 MgtC family Aminotran_3 PF00202.16 gi|313126139|ref|YP_004036409.1| - 2.6e-64 217.2 0.0 1.6e-63 214.6 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|313126139|ref|YP_004036409.1| - 0.044 12.9 0.0 0.069 12.2 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase TPPK_C PF12555.3 gi|313126140|ref|YP_004036410.1| - 3.9 7.2 5.3 3.1 7.6 3.1 1.3 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal XPG_I PF00867.13 gi|313126141|ref|YP_004036411.1| - 1.3e-25 89.2 0.1 2.3e-25 88.4 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|313126141|ref|YP_004036411.1| - 1e-11 44.9 0.0 1.7e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|313126141|ref|YP_004036411.1| - 5e-05 23.4 0.0 0.0001 22.4 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|313126141|ref|YP_004036411.1| - 0.013 14.9 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Serglycin PF04360.7 gi|313126142|ref|YP_004036412.1| - 0.001 18.8 0.3 0.0014 18.3 0.2 1.2 1 0 0 1 1 1 1 Serglycin Acetyltransf_1 PF00583.19 gi|313126142|ref|YP_004036412.1| - 0.021 14.8 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|313126142|ref|YP_004036412.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Methyltransf_11 PF08241.7 gi|313126143|ref|YP_004036413.1| - 5.1e-21 74.9 0.1 7.4e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126143|ref|YP_004036413.1| - 2.8e-20 72.6 0.0 3.8e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313126143|ref|YP_004036413.1| - 2.6e-13 49.6 0.0 4.3e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|313126143|ref|YP_004036413.1| - 3e-13 49.6 0.0 4.3e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313126143|ref|YP_004036413.1| - 7.1e-13 48.8 0.0 1.2e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313126143|ref|YP_004036413.1| - 2.3e-11 44.2 0.1 4.2e-11 43.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126143|ref|YP_004036413.1| - 8.7e-09 35.6 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313126143|ref|YP_004036413.1| - 7.6e-05 22.7 1.3 0.00017 21.5 0.9 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|313126143|ref|YP_004036413.1| - 0.0033 16.8 0.0 0.0044 16.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|313126143|ref|YP_004036413.1| - 0.0059 16.2 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.1 gi|313126143|ref|YP_004036413.1| - 0.033 14.9 0.1 0.051 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF3054 PF11255.3 gi|313126144|ref|YP_004036414.1| - 6.5e-24 83.9 9.6 7.4e-24 83.7 6.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) MFS_1 PF07690.11 gi|313126145|ref|YP_004036415.1| - 8.2e-26 90.5 60.7 2.9e-19 69.0 18.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|313126145|ref|YP_004036415.1| - 2.1e-05 23.3 20.9 0.0081 14.7 1.6 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|313126145|ref|YP_004036415.1| - 0.38 8.8 23.8 0.041 11.9 4.2 3.1 2 1 1 3 3 3 0 Transmembrane secretion effector DUF4212 PF13937.1 gi|313126145|ref|YP_004036415.1| - 5.7 7.0 8.8 1.1 9.2 0.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4212) IncA PF04156.9 gi|313126146|ref|YP_004036416.1| - 0.043 13.4 8.8 0.055 13.0 6.1 1.0 1 0 0 1 1 1 0 IncA protein PetG PF02529.10 gi|313126146|ref|YP_004036416.1| - 0.4 10.2 2.2 0.71 9.4 1.5 1.5 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 OCD_Mu_crystall PF02423.10 gi|313126147|ref|YP_004036417.1| - 5.8e-63 212.5 0.5 7.2e-63 212.2 0.3 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|313126147|ref|YP_004036417.1| - 0.00086 19.6 0.8 0.0019 18.5 0.3 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|313126147|ref|YP_004036417.1| - 0.0023 18.0 0.0 0.0035 17.4 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|313126147|ref|YP_004036417.1| - 0.016 15.4 0.1 0.037 14.2 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding eRF1_1 PF03463.10 gi|313126148|ref|YP_004036418.1| - 4.1e-32 110.5 0.5 6.4e-32 109.9 0.3 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|313126148|ref|YP_004036418.1| - 1.8e-24 86.1 0.8 5.1e-24 84.7 0.1 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|313126148|ref|YP_004036418.1| - 3e-20 72.8 0.0 6.1e-20 71.8 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|313126148|ref|YP_004036418.1| - 0.02 14.3 0.1 0.037 13.5 0.1 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DUF4013 PF13197.1 gi|313126149|ref|YP_004036419.1| - 1.4e-44 151.4 33.8 1.4e-44 151.4 23.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Man-6-P_recep PF02157.10 gi|313126149|ref|YP_004036419.1| - 0.09 11.7 0.1 0.09 11.7 0.1 2.1 2 0 0 2 2 2 0 Mannose-6-phosphate receptor DUF4013 PF13197.1 gi|313126150|ref|YP_004036420.1| - 1.2e-41 141.8 21.9 1.2e-41 141.8 15.2 1.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) EI24 PF07264.6 gi|313126150|ref|YP_004036420.1| - 0.02 14.3 16.4 0.71 9.2 11.3 2.2 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) XhlA PF10779.4 gi|313126150|ref|YP_004036420.1| - 0.074 12.9 0.3 0.074 12.9 0.2 3.1 3 0 0 3 3 3 0 Haemolysin XhlA FbpA PF05833.6 gi|313126151|ref|YP_004036421.1| - 4.6e-93 312.2 0.0 6.1e-93 311.8 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|313126151|ref|YP_004036421.1| - 1.2e-27 95.5 0.0 2.1e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) ARID PF01388.16 gi|313126151|ref|YP_004036421.1| - 0.039 13.8 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 ARID/BRIGHT DNA binding domain Apidaecin PF00807.12 gi|313126151|ref|YP_004036421.1| - 0.16 11.6 1.6 0.37 10.5 1.1 1.6 1 0 0 1 1 1 0 Apidaecin THOC7 PF05615.8 gi|313126151|ref|YP_004036421.1| - 3.4 7.9 8.7 17 5.6 0.7 2.6 2 0 0 2 2 2 0 Tho complex subunit 7 Acetyltransf_7 PF13508.1 gi|313126152|ref|YP_004036422.1| - 3.3e-14 52.8 0.0 4.9e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313126152|ref|YP_004036422.1| - 1.6e-13 50.4 0.1 2.3e-13 49.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|313126152|ref|YP_004036422.1| - 1.8e-10 40.7 0.5 3.1e-10 39.9 0.3 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313126152|ref|YP_004036422.1| - 2.5e-10 40.5 0.1 3e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313126152|ref|YP_004036422.1| - 1.9e-06 27.8 0.0 3.1e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|313126152|ref|YP_004036422.1| - 6.4e-05 23.4 1.4 0.00012 22.5 0.8 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Autoind_synth PF00765.12 gi|313126152|ref|YP_004036422.1| - 0.00016 20.9 0.6 0.00058 19.1 0.1 1.8 1 1 1 2 2 2 1 Autoinducer synthetase Acetyltransf_8 PF13523.1 gi|313126152|ref|YP_004036422.1| - 0.021 14.7 0.2 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MCPsignal PF00015.16 gi|313126153|ref|YP_004036423.1| - 9.2e-47 159.3 43.4 3.2e-45 154.3 14.4 2.9 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|313126153|ref|YP_004036423.1| - 9.2e-10 38.8 0.1 2e-08 34.5 0.0 2.9 3 0 0 3 3 2 1 PAS domain PAS_4 PF08448.5 gi|313126153|ref|YP_004036423.1| - 1.7e-07 31.2 2.6 5.5e-06 26.3 0.1 3.8 3 1 0 3 3 3 1 PAS fold PAS PF00989.19 gi|313126153|ref|YP_004036423.1| - 1.8e-07 30.9 0.1 1.6e-06 27.8 0.0 2.8 2 2 0 2 2 2 1 PAS fold IncA PF04156.9 gi|313126153|ref|YP_004036423.1| - 0.00012 21.7 21.9 0.0054 16.3 3.1 3.0 1 1 2 3 3 3 2 IncA protein DUF1664 PF07889.7 gi|313126153|ref|YP_004036423.1| - 0.0006 19.5 25.3 0.032 14.0 2.2 4.9 2 2 3 5 5 5 2 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|313126153|ref|YP_004036423.1| - 0.0028 17.4 26.3 0.0091 15.8 2.1 5.0 2 2 2 5 5 5 1 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|313126153|ref|YP_004036423.1| - 0.0035 17.1 28.0 0.14 11.9 2.0 4.5 2 2 2 4 4 4 3 Laminin Domain II Tropomyosin_1 PF12718.2 gi|313126153|ref|YP_004036423.1| - 0.0074 16.1 5.1 0.0074 16.1 3.6 3.4 3 1 0 3 3 3 1 Tropomyosin like PAS_8 PF13188.1 gi|313126153|ref|YP_004036423.1| - 0.012 15.4 0.0 1.1 9.2 0.0 2.8 2 0 0 2 2 2 0 PAS domain MitMem_reg PF13012.1 gi|313126153|ref|YP_004036423.1| - 0.019 15.0 0.9 0.14 12.2 0.1 2.7 2 2 0 2 2 2 0 Maintenance of mitochondrial structure and function AAA_13 PF13166.1 gi|313126153|ref|YP_004036423.1| - 0.029 12.8 19.6 0.33 9.3 5.2 2.1 1 1 1 2 2 2 0 AAA domain DUF2130 PF09903.4 gi|313126153|ref|YP_004036423.1| - 0.034 12.9 1.9 0.056 12.1 0.1 2.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) RmuC PF02646.11 gi|313126153|ref|YP_004036423.1| - 0.039 12.7 9.8 0.4 9.4 0.3 4.1 3 2 1 4 4 4 0 RmuC family DUF1599 PF07659.6 gi|313126153|ref|YP_004036423.1| - 0.041 13.9 0.6 0.16 12.0 0.4 2.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1599) GAS PF13851.1 gi|313126153|ref|YP_004036423.1| - 0.072 12.2 11.3 0.65 9.1 0.7 3.4 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Nup54 PF13874.1 gi|313126153|ref|YP_004036423.1| - 0.077 12.6 11.4 0.34 10.5 0.1 4.4 4 1 1 5 5 5 0 Nucleoporin complex subunit 54 Atg14 PF10186.4 gi|313126153|ref|YP_004036423.1| - 0.09 11.7 10.9 0.3 10.0 1.8 2.6 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 HDV_ag PF01517.13 gi|313126153|ref|YP_004036423.1| - 0.1 12.2 1.4 0.2 11.3 0.1 2.1 3 0 0 3 3 1 0 Hepatitis delta virus delta antigen Syntaxin-6_N PF09177.6 gi|313126153|ref|YP_004036423.1| - 0.11 12.9 26.0 0.3 11.4 0.3 4.9 2 2 2 4 4 4 0 Syntaxin 6, N-terminal DUF725 PF05267.7 gi|313126153|ref|YP_004036423.1| - 0.16 11.8 7.9 2.2 8.2 0.5 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF725) Ferritin PF00210.19 gi|313126153|ref|YP_004036423.1| - 0.22 11.2 9.8 0.34 10.6 1.8 2.9 2 2 0 2 2 2 0 Ferritin-like domain Baculo_PEP_C PF04513.7 gi|313126153|ref|YP_004036423.1| - 0.32 10.8 14.9 0.61 9.8 2.4 3.7 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMPIT PF07851.8 gi|313126153|ref|YP_004036423.1| - 0.39 9.7 5.6 2 7.4 0.1 2.8 2 1 1 3 3 3 0 TMPIT-like protein NPV_P10 PF05531.7 gi|313126153|ref|YP_004036423.1| - 0.48 10.7 26.2 0.08 13.1 1.9 6.0 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein LOH1CR12 PF10158.4 gi|313126153|ref|YP_004036423.1| - 0.58 9.9 4.7 4.3 7.1 0.2 3.5 1 1 3 4 4 4 0 Tumour suppressor protein V_ATPase_I PF01496.14 gi|313126153|ref|YP_004036423.1| - 0.76 7.5 15.5 1.7 6.4 10.7 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family IFT57 PF10498.4 gi|313126153|ref|YP_004036423.1| - 0.78 8.4 17.4 0.98 8.0 1.1 2.6 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Syntaxin PF00804.20 gi|313126153|ref|YP_004036423.1| - 1 9.5 20.0 0.84 9.8 0.6 4.5 2 1 2 4 4 4 0 Syntaxin DUF3450 PF11932.3 gi|313126153|ref|YP_004036423.1| - 1 8.5 17.4 1.1 8.5 0.8 3.6 3 2 1 4 4 3 0 Protein of unknown function (DUF3450) Cytochrom_C_2 PF01322.15 gi|313126153|ref|YP_004036423.1| - 1.1 9.8 14.6 0.41 11.2 0.8 3.4 3 1 0 3 3 2 0 Cytochrome C' WXG100 PF06013.7 gi|313126153|ref|YP_004036423.1| - 1.1 9.2 18.4 7.5 6.6 0.7 6.1 4 2 1 5 5 5 0 Proteins of 100 residues with WXG Hemerythrin PF01814.18 gi|313126153|ref|YP_004036423.1| - 1.3 9.1 13.9 1.3 9.2 1.4 4.0 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain Spc7 PF08317.6 gi|313126153|ref|YP_004036423.1| - 1.5 7.3 22.8 1.7 7.2 3.1 3.1 1 1 0 3 3 3 0 Spc7 kinetochore protein BAR PF03114.13 gi|313126153|ref|YP_004036423.1| - 1.8 8.0 6.1 1.1 8.7 0.4 2.7 2 1 1 3 3 3 0 BAR domain ECM11 PF15463.1 gi|313126153|ref|YP_004036423.1| - 2 8.7 7.2 7.1 6.9 0.2 3.6 3 1 0 3 3 3 0 Extracellular mutant protein 11 COG2 PF06148.6 gi|313126153|ref|YP_004036423.1| - 2.1 8.2 22.9 2.3 8.1 0.3 5.5 1 1 6 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.7 gi|313126153|ref|YP_004036423.1| - 2.3 7.9 21.6 0.042 13.5 1.2 3.5 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein DUF745 PF05335.8 gi|313126153|ref|YP_004036423.1| - 4.2 6.8 26.2 2.9 7.3 3.6 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF745) Cauli_AT PF03233.8 gi|313126153|ref|YP_004036423.1| - 4.8 6.8 10.0 1.7 8.3 0.3 3.7 2 2 1 4 4 4 0 Aphid transmission protein Prefoldin_2 PF01920.15 gi|313126153|ref|YP_004036423.1| - 5.8 6.7 19.4 0.17 11.6 1.2 4.9 2 2 2 5 5 5 0 Prefoldin subunit Prominin PF05478.6 gi|313126153|ref|YP_004036423.1| - 6.1 4.2 14.5 1.4 6.3 3.6 2.1 1 1 0 2 2 2 0 Prominin ATG16 PF08614.6 gi|313126153|ref|YP_004036423.1| - 6.6 6.5 26.4 2.1 8.0 3.8 3.5 2 2 1 3 3 3 0 Autophagy protein 16 (ATG16) V-SNARE PF05008.10 gi|313126153|ref|YP_004036423.1| - 6.7 6.9 9.6 1.6 8.9 0.3 3.9 2 2 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Spectrin PF00435.16 gi|313126153|ref|YP_004036423.1| - 7.3 6.9 16.4 22 5.4 1.0 4.7 1 1 3 5 5 5 0 Spectrin repeat Reo_sigmaC PF04582.7 gi|313126153|ref|YP_004036423.1| - 7.7 5.5 26.7 2.2 7.3 6.6 2.6 1 1 2 3 3 3 0 Reovirus sigma C capsid protein SlyX PF04102.7 gi|313126153|ref|YP_004036423.1| - 8.6 6.8 15.3 1 9.7 0.3 4.1 4 1 1 5 5 4 0 SlyX MS_channel PF00924.13 gi|313126154|ref|YP_004036424.1| - 4.1e-44 150.3 0.1 7.2e-44 149.5 0.1 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3522 PF12036.3 gi|313126154|ref|YP_004036424.1| - 0.47 10.2 2.5 5.6 6.7 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3522) SHOCT PF09851.4 gi|313126155|ref|YP_004036425.1| - 2.1e-09 36.5 1.1 2.9e-09 36.0 0.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|313126155|ref|YP_004036425.1| - 0.00035 20.2 3.0 0.00056 19.5 2.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF1206 PF06724.6 gi|313126155|ref|YP_004036425.1| - 2.1 8.1 9.4 9.7 6.0 1.2 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) DUF2244 PF10003.4 gi|313126155|ref|YP_004036425.1| - 8.1 5.8 11.5 24 4.3 7.4 2.0 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) UbiA PF01040.13 gi|313126155|ref|YP_004036425.1| - 8.5 5.5 8.4 11 5.1 5.8 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family Radical_SAM PF04055.16 gi|313126156|ref|YP_004036426.1| - 1.9e-22 80.1 0.0 4.8e-22 78.8 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|313126156|ref|YP_004036426.1| - 8.7e-11 41.7 0.3 2.4e-10 40.2 0.2 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313126156|ref|YP_004036426.1| - 0.051 13.7 0.0 0.16 12.1 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Fibrinogen_aC PF12160.3 gi|313126156|ref|YP_004036426.1| - 0.11 11.9 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 Fibrinogen alpha C domain HTH_IclR PF09339.5 gi|313126157|ref|YP_004036427.1| - 0.00046 19.7 1.1 0.0017 17.8 0.1 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313126157|ref|YP_004036427.1| - 0.0034 17.0 0.1 0.0034 17.0 0.1 1.8 2 0 0 2 2 2 1 MarR family Pro-kuma_activ PF09286.6 gi|313126157|ref|YP_004036427.1| - 0.0045 17.0 0.0 0.0065 16.5 0.0 1.2 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain PAZ_siRNAbind PF12212.3 gi|313126157|ref|YP_004036427.1| - 0.012 15.2 0.1 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Piwi/Argonaute/Zwille siRNA-binding domain HTH_45 PF14947.1 gi|313126157|ref|YP_004036427.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|313126157|ref|YP_004036427.1| - 0.095 12.5 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|313126157|ref|YP_004036427.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|313126157|ref|YP_004036427.1| - 0.11 11.9 0.1 0.27 10.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family tRNA_anti-codon PF01336.20 gi|313126159|ref|YP_004036429.1| - 6.4e-10 38.7 0.4 1.4e-09 37.6 0.3 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|313126159|ref|YP_004036429.1| - 2.1e-09 37.3 1.9 2.1e-08 34.1 0.0 3.3 3 1 0 3 3 3 1 S1 RNA binding domain SAGA-Tad1 PF12767.2 gi|313126159|ref|YP_004036429.1| - 0.31 10.6 1.0 0.55 9.8 0.7 1.3 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit Yip1 PF04893.12 gi|313126160|ref|YP_004036430.1| - 1.3e-12 47.5 16.6 1.8e-12 47.0 11.5 1.2 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|313126160|ref|YP_004036430.1| - 0.31 10.6 12.6 1.3 8.6 8.5 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) TK PF00265.13 gi|313126161|ref|YP_004036431.1| - 2.3e-50 170.6 0.0 2.6e-50 170.4 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_30 PF13604.1 gi|313126161|ref|YP_004036431.1| - 0.038 13.5 0.2 0.088 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain Peripla_BP_2 PF01497.13 gi|313126161|ref|YP_004036431.1| - 0.071 12.2 0.0 0.088 11.9 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein FMN_red PF03358.10 gi|313126162|ref|YP_004036432.1| - 2.5e-34 117.9 0.0 3e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|313126162|ref|YP_004036432.1| - 8.5e-10 38.4 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|313126162|ref|YP_004036432.1| - 0.073 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain DrsE PF02635.10 gi|313126163|ref|YP_004036433.1| - 1.9e-18 66.6 0.0 2.1e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.7 gi|313126163|ref|YP_004036433.1| - 0.086 12.5 0.1 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 DsrH like protein DUF2899 PF11449.3 gi|313126164|ref|YP_004036434.1| - 6.7e-74 248.7 16.4 4.5e-69 232.9 9.7 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2899) DUF3529 PF12046.3 gi|313126164|ref|YP_004036434.1| - 7 5.6 9.1 12 4.8 0.7 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF3529) Usp PF00582.21 gi|313126165|ref|YP_004036435.1| - 1.6e-37 128.8 0.9 1.9e-37 128.6 0.6 1.1 1 0 0 1 1 1 1 Universal stress protein family vATP-synt_AC39 PF01992.11 gi|313126165|ref|YP_004036435.1| - 0.0099 15.0 0.0 0.012 14.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF387 PF04079.11 gi|313126165|ref|YP_004036435.1| - 0.02 14.2 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) TrwB_AAD_bind PF10412.4 gi|313126165|ref|YP_004036435.1| - 0.07 11.7 0.1 0.084 11.4 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HTH_10 PF04967.7 gi|313126166|ref|YP_004036436.1| - 6.4e-20 70.4 0.0 1e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.1 gi|313126166|ref|YP_004036436.1| - 2.4e-05 23.7 0.0 4.8e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313126166|ref|YP_004036436.1| - 0.00031 20.1 0.3 0.002 17.5 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|313126166|ref|YP_004036436.1| - 0.00093 18.5 0.0 0.0014 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313126166|ref|YP_004036436.1| - 0.0012 18.4 0.1 0.0044 16.6 0.1 2.0 2 0 0 2 2 2 1 MarR family GerE PF00196.14 gi|313126166|ref|YP_004036436.1| - 0.002 17.3 0.1 0.027 13.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|313126166|ref|YP_004036436.1| - 0.007 15.6 0.1 0.016 14.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|313126166|ref|YP_004036436.1| - 0.028 14.2 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313126166|ref|YP_004036436.1| - 0.03 14.2 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313126166|ref|YP_004036436.1| - 0.041 13.5 0.0 0.091 12.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.15 gi|313126166|ref|YP_004036436.1| - 0.042 13.5 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|313126166|ref|YP_004036436.1| - 0.047 13.2 0.1 0.14 11.7 0.1 1.7 1 1 0 1 1 1 0 LexA DNA binding domain HTH_40 PF14493.1 gi|313126166|ref|YP_004036436.1| - 0.14 12.4 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain NAD_binding_10 PF13460.1 gi|313126167|ref|YP_004036437.1| - 5.5e-28 98.2 2.9 7.8e-28 97.7 2.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313126167|ref|YP_004036437.1| - 1.4e-19 70.3 0.0 1.7e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|313126167|ref|YP_004036437.1| - 1.3e-13 50.9 0.1 2.1e-13 50.2 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313126167|ref|YP_004036437.1| - 7.9e-12 44.4 0.0 1.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313126167|ref|YP_004036437.1| - 4.4e-07 29.0 0.6 1.9e-06 27.0 0.3 2.0 2 1 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|313126167|ref|YP_004036437.1| - 0.00027 20.9 4.7 0.00063 19.7 3.3 1.6 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|313126167|ref|YP_004036437.1| - 0.001 18.0 2.2 0.04 12.8 1.5 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|313126167|ref|YP_004036437.1| - 0.019 13.9 5.0 2.1 7.2 0.7 3.0 1 1 2 3 3 3 0 Male sterility protein F420_oxidored PF03807.12 gi|313126167|ref|YP_004036437.1| - 0.019 15.3 0.1 0.062 13.7 0.1 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent KR PF08659.5 gi|313126167|ref|YP_004036437.1| - 0.022 14.4 2.4 0.069 12.8 1.6 1.9 1 1 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|313126167|ref|YP_004036437.1| - 0.024 14.5 0.3 0.041 13.8 0.2 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DFP PF04127.10 gi|313126167|ref|YP_004036437.1| - 0.13 11.9 0.5 0.19 11.3 0.4 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein HhH-GPD PF00730.20 gi|313126168|ref|YP_004036438.1| - 2.8e-16 59.7 0.0 4.3e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|313126168|ref|YP_004036438.1| - 1.3e-08 34.0 0.0 2.7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|313126168|ref|YP_004036438.1| - 0.52 10.5 3.9 1.1 9.5 2.7 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III FAD_binding_3 PF01494.14 gi|313126169|ref|YP_004036439.1| - 4.2e-43 147.7 0.0 5.3e-43 147.4 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|313126169|ref|YP_004036439.1| - 9.4e-09 34.6 1.4 0.00098 18.1 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313126169|ref|YP_004036439.1| - 1.8e-08 33.6 0.2 0.00038 19.4 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|313126169|ref|YP_004036439.1| - 1.3e-05 24.4 0.1 0.00011 21.4 0.0 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|313126169|ref|YP_004036439.1| - 0.00022 21.1 0.2 0.0011 18.8 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|313126169|ref|YP_004036439.1| - 0.0041 16.0 0.0 0.0086 14.9 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|313126169|ref|YP_004036439.1| - 0.0042 16.9 0.0 0.0088 15.9 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|313126169|ref|YP_004036439.1| - 0.0081 15.0 0.0 0.018 13.8 0.0 1.5 2 0 0 2 2 2 1 Squalene epoxidase ThiF PF00899.16 gi|313126169|ref|YP_004036439.1| - 0.0086 15.9 0.2 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 ThiF family Lycopene_cycl PF05834.7 gi|313126169|ref|YP_004036439.1| - 0.0087 15.0 2.6 0.096 11.5 0.0 2.8 3 0 0 3 3 3 1 Lycopene cyclase protein ApbA PF02558.11 gi|313126169|ref|YP_004036439.1| - 0.0091 15.4 0.1 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|313126169|ref|YP_004036439.1| - 0.012 16.0 0.2 0.027 14.8 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313126169|ref|YP_004036439.1| - 0.037 12.5 0.0 0.055 11.9 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein FAD_oxidored PF12831.2 gi|313126169|ref|YP_004036439.1| - 0.049 12.7 0.6 0.09 11.8 0.4 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase GDI PF00996.13 gi|313126169|ref|YP_004036439.1| - 0.27 9.5 0.0 0.47 8.7 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor HTH_10 PF04967.7 gi|313126170|ref|YP_004036440.1| - 2.6e-18 65.3 0.1 3.7e-18 64.8 0.1 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313126170|ref|YP_004036440.1| - 0.0006 19.2 0.1 0.001 18.4 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|313126170|ref|YP_004036440.1| - 0.00067 18.9 0.0 0.0092 15.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|313126170|ref|YP_004036440.1| - 0.0027 16.9 0.0 0.0053 16.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|313126170|ref|YP_004036440.1| - 0.0036 16.8 0.1 0.0076 15.7 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313126170|ref|YP_004036440.1| - 0.0083 15.7 0.1 0.015 14.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313126170|ref|YP_004036440.1| - 0.025 14.4 0.9 0.053 13.3 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|313126170|ref|YP_004036440.1| - 0.029 14.0 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|313126170|ref|YP_004036440.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MCPsignal PF00015.16 gi|313126173|ref|YP_004036443.1| - 1.8e-49 168.1 55.4 1.1e-46 159.0 22.3 4.3 2 1 0 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313126173|ref|YP_004036443.1| - 1.3e-10 41.2 7.5 4.8e-09 36.2 0.4 6.3 6 1 1 7 7 6 2 HAMP domain GOLGA2L5 PF15070.1 gi|313126173|ref|YP_004036443.1| - 0.00053 18.6 7.6 0.00053 18.6 5.3 2.3 2 1 0 2 2 2 1 Putative golgin subfamily A member 2-like protein 5 MutS_III PF05192.13 gi|313126173|ref|YP_004036443.1| - 0.003 17.3 4.6 0.0046 16.7 0.5 2.3 1 1 1 2 2 2 1 MutS domain III DUF4617 PF15395.1 gi|313126173|ref|YP_004036443.1| - 0.012 13.6 7.4 0.022 12.8 5.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4617) EzrA PF06160.7 gi|313126173|ref|YP_004036443.1| - 0.013 13.7 17.4 0.0068 14.6 5.4 2.6 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA AAA_13 PF13166.1 gi|313126173|ref|YP_004036443.1| - 0.019 13.4 14.3 0.23 9.8 0.3 2.1 1 1 0 2 2 2 0 AAA domain Atg14 PF10186.4 gi|313126173|ref|YP_004036443.1| - 0.032 13.1 4.3 0.096 11.6 0.3 2.6 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|313126173|ref|YP_004036443.1| - 0.041 12.5 10.9 0.97 8.0 3.7 2.5 2 0 0 2 2 2 0 Spc7 kinetochore protein RPW8 PF05659.6 gi|313126173|ref|YP_004036443.1| - 0.047 13.2 0.2 0.24 10.9 0.1 2.3 1 1 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ATG16 PF08614.6 gi|313126173|ref|YP_004036443.1| - 0.087 12.6 21.1 0.18 11.6 2.4 3.3 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DUF948 PF06103.6 gi|313126173|ref|YP_004036443.1| - 0.12 12.2 21.4 0.11 12.3 0.6 6.1 3 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) Mt_ATP-synt_B PF05405.9 gi|313126173|ref|YP_004036443.1| - 0.12 11.8 0.1 0.12 11.8 0.0 3.7 3 1 2 5 5 5 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Syntaxin PF00804.20 gi|313126173|ref|YP_004036443.1| - 0.14 12.2 15.9 5.3 7.2 1.6 4.9 2 1 3 5 5 5 0 Syntaxin YjcZ PF13990.1 gi|313126173|ref|YP_004036443.1| - 0.16 11.0 12.0 0.099 11.7 0.6 3.3 2 1 1 3 3 3 0 YjcZ-like protein CorA PF01544.13 gi|313126173|ref|YP_004036443.1| - 0.16 10.9 11.1 5.8 5.8 0.7 4.2 2 2 3 5 5 5 0 CorA-like Mg2+ transporter protein Nup54 PF13874.1 gi|313126173|ref|YP_004036443.1| - 0.18 11.4 8.7 0.42 10.2 1.2 3.2 2 2 2 4 4 4 0 Nucleoporin complex subunit 54 DUF4559 PF15112.1 gi|313126173|ref|YP_004036443.1| - 0.3 10.2 6.5 0.6 9.2 2.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) APG6 PF04111.7 gi|313126173|ref|YP_004036443.1| - 0.31 10.0 17.4 0.16 10.9 3.6 2.9 1 1 1 3 3 3 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|313126173|ref|YP_004036443.1| - 0.49 10.4 6.1 2.6 8.1 0.2 3.7 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family BAR_2 PF10455.4 gi|313126173|ref|YP_004036443.1| - 0.62 8.9 16.1 0.048 12.5 1.7 2.9 2 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking PhageMin_Tail PF10145.4 gi|313126173|ref|YP_004036443.1| - 1 8.9 35.0 0.016 14.8 10.0 3.3 1 1 2 3 3 3 0 Phage-related minor tail protein GAS PF13851.1 gi|313126173|ref|YP_004036443.1| - 1.3 8.1 8.5 13 4.8 0.1 2.6 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding APG17 PF04108.7 gi|313126173|ref|YP_004036443.1| - 1.4 7.6 14.4 8.8 5.0 6.4 2.8 1 1 0 2 2 2 0 Autophagy protein Apg17 WXG100 PF06013.7 gi|313126173|ref|YP_004036443.1| - 1.6 8.7 26.4 0.29 11.1 2.7 6.3 2 2 2 5 5 5 0 Proteins of 100 residues with WXG DASH_Dad2 PF08654.5 gi|313126173|ref|YP_004036443.1| - 1.8 8.5 22.7 0.28 11.1 1.3 5.6 4 2 2 6 6 6 0 DASH complex subunit Dad2 IFT57 PF10498.4 gi|313126173|ref|YP_004036443.1| - 3.6 6.2 10.7 2.6 6.6 0.1 3.0 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 FlaC_arch PF05377.6 gi|313126173|ref|YP_004036443.1| - 3.7 7.5 10.9 15 5.6 0.3 4.5 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.7 gi|313126173|ref|YP_004036443.1| - 4.4 7.1 17.6 2.5 7.9 1.4 5.2 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|313126173|ref|YP_004036443.1| - 5.2 4.4 13.3 0.36 8.3 5.2 2.0 2 1 0 2 2 2 0 Prominin Mnd1 PF03962.10 gi|313126173|ref|YP_004036443.1| - 5.2 6.6 17.5 10 5.7 1.1 3.6 1 1 0 2 2 2 0 Mnd1 family BLOC1_2 PF10046.4 gi|313126173|ref|YP_004036443.1| - 5.9 7.1 17.3 7.4 6.7 1.1 4.8 3 2 2 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMPIT PF07851.8 gi|313126173|ref|YP_004036443.1| - 6.8 5.6 6.1 17 4.3 1.0 2.8 2 1 1 3 3 3 0 TMPIT-like protein COG2 PF06148.6 gi|313126173|ref|YP_004036443.1| - 6.9 6.5 17.7 4.2 7.2 1.1 4.8 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 BolA PF01722.13 gi|313126175|ref|YP_004036445.1| - 4.2e-22 77.9 0.0 4.6e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein ABC_tran PF00005.22 gi|313126176|ref|YP_004036446.1| - 5.6e-32 110.9 0.0 9.8e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126176|ref|YP_004036446.1| - 3.4e-08 33.8 0.0 0.0034 17.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|313126176|ref|YP_004036446.1| - 2.1e-06 27.6 0.3 1.1e-05 25.2 0.1 2.4 3 0 0 3 3 2 1 TOBE domain TOBE PF03459.12 gi|313126176|ref|YP_004036446.1| - 8.7e-05 22.5 0.1 0.0011 19.0 0.0 2.6 1 1 1 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|313126176|ref|YP_004036446.1| - 0.0014 17.9 0.1 0.031 13.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|313126176|ref|YP_004036446.1| - 0.0014 17.8 0.0 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|313126176|ref|YP_004036446.1| - 0.0015 17.6 0.0 0.03 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126176|ref|YP_004036446.1| - 0.0016 18.5 0.0 0.0049 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|313126176|ref|YP_004036446.1| - 0.0016 18.2 0.0 0.0041 17.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313126176|ref|YP_004036446.1| - 0.0025 17.2 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|313126176|ref|YP_004036446.1| - 0.0029 16.3 0.0 0.0039 15.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|313126176|ref|YP_004036446.1| - 0.0049 16.8 0.1 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|313126176|ref|YP_004036446.1| - 0.0076 16.4 0.0 0.043 14.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|313126176|ref|YP_004036446.1| - 0.0076 17.0 0.0 0.018 15.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313126176|ref|YP_004036446.1| - 0.0086 15.4 1.4 0.22 10.8 0.1 3.0 3 1 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|313126176|ref|YP_004036446.1| - 0.036 13.5 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|313126176|ref|YP_004036446.1| - 0.078 12.8 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|313126176|ref|YP_004036446.1| - 0.087 13.1 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313126176|ref|YP_004036446.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|313126176|ref|YP_004036446.1| - 0.13 12.7 0.0 0.81 10.2 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein Zeta_toxin PF06414.7 gi|313126176|ref|YP_004036446.1| - 0.14 11.2 0.0 0.28 10.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin BPD_transp_1 PF00528.17 gi|313126177|ref|YP_004036447.1| - 3.6e-17 62.4 13.9 7.1e-17 61.5 9.7 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313126178|ref|YP_004036448.1| - 6.5e-21 74.6 19.5 6.5e-21 74.6 13.5 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|313126179|ref|YP_004036449.1| - 1.7e-29 103.4 1.9 2.5e-29 102.9 1.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313126179|ref|YP_004036449.1| - 2.9e-19 69.9 6.1 3.8e-19 69.5 4.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313126179|ref|YP_004036449.1| - 0.0028 17.0 0.0 1.2 8.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313126179|ref|YP_004036449.1| - 0.0078 15.8 0.0 0.14 11.7 0.0 2.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Myco_19_kDa PF05481.7 gi|313126179|ref|YP_004036449.1| - 0.029 14.2 2.0 0.062 13.1 1.4 1.5 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen Lyase_1 PF00206.15 gi|313126180|ref|YP_004036450.1| - 1.5e-108 362.6 0.1 2.4e-108 362.0 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|313126180|ref|YP_004036450.1| - 6.2e-27 93.4 1.1 1.4e-26 92.2 0.2 2.1 2 0 0 2 2 2 1 Fumarase C C-terminus ADSL_C PF10397.4 gi|313126180|ref|YP_004036450.1| - 0.051 13.5 0.1 0.45 10.5 0.0 2.6 1 1 1 2 2 2 0 Adenylosuccinate lyase C-terminus zf-C2H2_6 PF13912.1 gi|313126181|ref|YP_004036451.1| - 0.00025 20.8 1.0 0.06 13.2 0.0 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|313126181|ref|YP_004036451.1| - 0.00063 19.6 0.8 0.0012 18.7 0.6 1.4 1 0 0 1 1 1 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|313126181|ref|YP_004036451.1| - 0.0029 17.2 2.8 0.025 14.2 0.0 2.2 1 1 1 2 2 2 1 RNA polymerases M/15 Kd subunit C1_4 PF07975.7 gi|313126181|ref|YP_004036451.1| - 0.0034 17.3 0.5 0.0046 16.9 0.4 1.2 1 0 0 1 1 1 1 TFIIH C1-like domain HypA PF01155.14 gi|313126181|ref|YP_004036451.1| - 0.0052 16.4 0.2 0.0053 16.4 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-H2C2_2 PF13465.1 gi|313126181|ref|YP_004036451.1| - 0.009 16.2 0.5 4.1 7.8 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain DZR PF12773.2 gi|313126181|ref|YP_004036451.1| - 0.017 14.8 2.6 0.038 13.8 1.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|313126181|ref|YP_004036451.1| - 0.025 14.2 1.2 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313126181|ref|YP_004036451.1| - 0.027 14.0 1.3 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|313126181|ref|YP_004036451.1| - 0.037 13.5 2.9 1.5 8.3 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger zinc_ribbon_2 PF13240.1 gi|313126181|ref|YP_004036451.1| - 0.042 13.3 2.1 0.085 12.3 1.5 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DUF2387 PF09526.5 gi|313126181|ref|YP_004036451.1| - 0.056 13.3 1.9 1.1 9.2 0.0 2.1 1 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|313126181|ref|YP_004036451.1| - 0.057 12.6 2.5 2 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3133 PF11331.3 gi|313126181|ref|YP_004036451.1| - 0.068 12.7 0.6 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Elf1 PF05129.8 gi|313126181|ref|YP_004036451.1| - 0.069 12.8 1.1 3.3 7.4 0.0 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-Sec23_Sec24 PF04810.10 gi|313126181|ref|YP_004036451.1| - 0.088 12.3 1.9 0.26 10.8 1.3 1.7 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger SprT-like PF10263.4 gi|313126181|ref|YP_004036451.1| - 0.088 12.4 0.1 0.1 12.2 0.1 1.0 1 0 0 1 1 1 0 SprT-like family zf-CHY PF05495.7 gi|313126181|ref|YP_004036451.1| - 0.092 12.9 0.4 0.11 12.6 0.3 1.1 1 0 0 1 1 1 0 CHY zinc finger YwqJ-deaminase PF14431.1 gi|313126181|ref|YP_004036451.1| - 0.12 12.2 0.7 0.13 12.1 0.0 1.4 2 0 0 2 2 2 0 YwqJ-like deaminase RNHCP PF12647.2 gi|313126181|ref|YP_004036451.1| - 0.13 12.1 0.4 0.16 11.7 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain LIM PF00412.17 gi|313126181|ref|YP_004036451.1| - 0.15 12.1 1.8 0.42 10.7 1.3 1.6 1 1 1 2 2 2 0 LIM domain zf-HIT PF04438.11 gi|313126181|ref|YP_004036451.1| - 0.17 11.5 1.3 0.8 9.3 0.1 2.0 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|313126181|ref|YP_004036451.1| - 0.21 11.1 2.2 6 6.4 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2296 PF10058.4 gi|313126181|ref|YP_004036451.1| - 0.21 11.3 1.9 0.35 10.6 1.3 1.4 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2_4 PF13894.1 gi|313126181|ref|YP_004036451.1| - 0.22 11.9 1.2 16 6.1 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger PHD PF00628.24 gi|313126181|ref|YP_004036451.1| - 0.45 10.2 4.6 12 5.7 3.2 2.1 1 1 0 1 1 1 0 PHD-finger Rubredoxin PF00301.15 gi|313126181|ref|YP_004036451.1| - 0.48 10.3 3.4 8.1 6.4 2.4 2.1 1 1 0 1 1 1 0 Rubredoxin GatB_N PF02934.10 gi|313126182|ref|YP_004036452.1| - 2e-73 246.7 0.0 2.9e-73 246.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|313126182|ref|YP_004036452.1| - 2.8e-24 85.5 0.1 4.5e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|313126182|ref|YP_004036452.1| - 1.6e-13 50.5 0.0 3.2e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|313126182|ref|YP_004036452.1| - 0.0013 18.5 0.4 0.0028 17.5 0.3 1.5 1 0 0 1 1 1 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.10 gi|313126182|ref|YP_004036452.1| - 0.067 12.7 0.0 0.2 11.1 0.0 1.8 2 0 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 MaoC_dehydrat_N PF13452.1 gi|313126183|ref|YP_004036453.1| - 9e-06 25.5 0.6 0.001 18.8 0.4 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|313126183|ref|YP_004036453.1| - 9.3e-06 25.0 0.3 4.5e-05 22.8 0.2 1.8 1 1 0 1 1 1 1 MaoC like domain AfsA PF03756.8 gi|313126183|ref|YP_004036453.1| - 0.097 12.3 0.4 0.13 11.9 0.3 1.3 1 0 0 1 1 1 0 A-factor biosynthesis hotdog domain PAS_3 PF08447.6 gi|313126184|ref|YP_004036454.1| - 2.1e-18 66.1 0.4 6e-18 64.7 0.1 2.0 2 0 0 2 2 2 1 PAS fold Response_reg PF00072.19 gi|313126184|ref|YP_004036454.1| - 2.3e-18 66.2 0.0 5.8e-18 64.9 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|313126184|ref|YP_004036454.1| - 3.1e-09 36.6 0.5 3.1e-09 36.6 0.4 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|313126184|ref|YP_004036454.1| - 1.5e-05 25.3 0.0 4.2e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain OKR_DC_1_N PF03709.10 gi|313126184|ref|YP_004036454.1| - 0.00016 21.7 0.1 0.00033 20.7 0.0 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_4 PF08448.5 gi|313126184|ref|YP_004036454.1| - 0.00039 20.4 0.3 0.0018 18.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold Methyltransf_24 PF13578.1 gi|313126184|ref|YP_004036454.1| - 0.055 14.3 1.1 2.2 9.1 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Peptidase_M48 PF01435.13 gi|313126185|ref|YP_004036455.1| - 1.9e-26 93.0 0.0 3.3e-26 92.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|313126185|ref|YP_004036455.1| - 1.3e-05 24.3 0.1 3.9e-05 22.7 0.0 1.9 1 1 1 2 2 2 1 BlaR1 peptidase M56 DUF3209 PF11483.3 gi|313126185|ref|YP_004036455.1| - 0.38 11.1 4.2 0.44 10.8 1.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3209) DUF1469 PF07332.6 gi|313126185|ref|YP_004036455.1| - 0.43 10.3 18.1 0.032 13.9 5.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1469) Herpes_LMP1 PF05297.6 gi|313126185|ref|YP_004036455.1| - 1.1 8.1 6.9 1.6 7.5 4.8 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4131 PF13567.1 gi|313126185|ref|YP_004036455.1| - 6.8 6.0 8.5 9.3 5.6 3.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) MaoC_dehydratas PF01575.14 gi|313126186|ref|YP_004036456.1| - 7.8e-16 57.5 0.0 9.3e-16 57.3 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain FabA PF07977.8 gi|313126186|ref|YP_004036456.1| - 5.2e-05 22.7 0.0 6.8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain MaoC_dehydrat_N PF13452.1 gi|313126186|ref|YP_004036456.1| - 0.0049 16.6 0.0 0.0076 16.0 0.0 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase SpoU_methylase PF00588.14 gi|313126187|ref|YP_004036457.1| - 3.1e-29 101.6 0.0 5.3e-29 100.9 0.0 1.4 2 0 0 2 2 2 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|313126187|ref|YP_004036457.1| - 0.0092 15.4 0.0 0.082 12.4 0.0 2.2 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase Peptidase_U35_2 PF14550.1 gi|313126187|ref|YP_004036457.1| - 0.028 14.0 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative phage protease XkdF Response_reg PF00072.19 gi|313126189|ref|YP_004036459.1| - 3.7e-16 59.1 0.1 6e-16 58.4 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|313126189|ref|YP_004036459.1| - 1.1e-10 41.3 3.0 3.1e-10 39.8 2.1 1.8 1 0 0 1 1 1 1 HalX domain ThiI PF02568.9 gi|313126189|ref|YP_004036459.1| - 0.02 14.3 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF1152 PF06626.7 gi|313126189|ref|YP_004036459.1| - 0.033 13.3 0.4 0.13 11.3 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1152) Pterin_bind PF00809.17 gi|313126190|ref|YP_004036460.1| - 1.9e-29 102.5 0.0 3e-29 101.9 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.13 gi|313126191|ref|YP_004036461.1| - 8.6e-24 83.9 0.0 1.1e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Fer4_10 PF13237.1 gi|313126192|ref|YP_004036462.1| - 0.22 11.3 2.8 0.43 10.4 1.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain FAD_binding_7 PF03441.9 gi|313126193|ref|YP_004036463.1| - 6.2e-100 333.9 4.7 8.4e-100 333.5 3.2 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|313126193|ref|YP_004036463.1| - 3.7e-49 166.6 2.7 1.2e-47 161.7 0.3 2.3 2 0 0 2 2 2 2 DNA photolyase Usp PF00582.21 gi|313126193|ref|YP_004036463.1| - 0.072 13.2 0.1 0.072 13.2 0.1 2.7 2 1 0 2 2 2 0 Universal stress protein family DUF2726 PF10881.3 gi|313126193|ref|YP_004036463.1| - 0.096 12.2 0.1 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2726) DUF4066 PF13278.1 gi|313126194|ref|YP_004036464.1| - 2.4e-37 127.7 0.1 2.8e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|313126194|ref|YP_004036464.1| - 3.3e-12 46.0 0.3 5.6e-12 45.3 0.1 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|313126194|ref|YP_004036464.1| - 0.0025 17.4 0.1 0.0046 16.5 0.1 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Fer2_2 PF01799.15 gi|313126194|ref|YP_004036464.1| - 0.02 14.7 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 [2Fe-2S] binding domain GATase_5 PF13507.1 gi|313126194|ref|YP_004036464.1| - 0.022 13.6 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Sod_Fe_C PF02777.13 gi|313126195|ref|YP_004036465.1| - 1.9e-36 124.1 0.1 3.1e-36 123.4 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|313126195|ref|YP_004036465.1| - 1.1e-31 108.8 0.4 1.8e-31 108.1 0.3 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Lactamase_B PF00753.22 gi|313126198|ref|YP_004036468.1| - 3.3e-22 79.0 7.8 4.5e-22 78.6 5.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313126198|ref|YP_004036468.1| - 0.0063 16.0 3.4 0.027 14.0 2.3 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313126198|ref|YP_004036468.1| - 0.028 14.1 0.4 0.037 13.7 0.3 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Thymidylat_synt PF00303.14 gi|313126201|ref|YP_004036471.1| - 4e-97 324.4 0.0 4.6e-97 324.2 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DHFR_1 PF00186.14 gi|313126202|ref|YP_004036472.1| - 3.6e-47 159.9 0.0 4.2e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase ABC_ATPase PF09818.4 gi|313126202|ref|YP_004036472.1| - 0.085 11.4 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF1508 PF07411.7 gi|313126203|ref|YP_004036473.1| - 3.3e-24 84.0 0.1 3.7e-24 83.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) Proteasome PF00227.21 gi|313126204|ref|YP_004036474.1| - 5.5e-51 172.5 0.0 6.8e-51 172.2 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|313126204|ref|YP_004036474.1| - 2.8e-12 45.6 0.2 2.8e-12 45.6 0.1 1.8 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature MOSC PF03473.12 gi|313126205|ref|YP_004036475.1| - 3.2e-14 52.5 0.0 4.7e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|313126205|ref|YP_004036475.1| - 9.7e-12 44.6 0.0 1.4e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 MOSC N-terminal beta barrel domain Amidohydro_1 PF01979.15 gi|313126206|ref|YP_004036476.1| - 5.7e-44 151.1 6.5 6.7e-44 150.8 4.5 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313126206|ref|YP_004036476.1| - 1.3e-23 84.4 12.4 1.1e-22 81.3 8.6 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313126206|ref|YP_004036476.1| - 8.8e-14 51.5 17.8 2.4e-12 46.7 6.7 2.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313126206|ref|YP_004036476.1| - 2.1e-13 49.8 0.4 2.1e-13 49.8 0.3 3.1 4 0 0 4 4 4 1 Amidohydrolase DUF2270 PF10028.4 gi|313126207|ref|YP_004036477.1| - 1e-62 210.8 7.0 1.3e-62 210.5 4.9 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Oxidored_q2 PF00420.19 gi|313126207|ref|YP_004036477.1| - 0.063 12.8 0.1 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MASE1 PF05231.9 gi|313126207|ref|YP_004036477.1| - 0.38 9.7 10.8 0.17 10.9 0.8 2.1 2 0 0 2 2 2 0 MASE1 Lyase_aromatic PF00221.14 gi|313126208|ref|YP_004036478.1| - 3.4e-181 602.8 9.0 3.9e-181 602.6 6.2 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_4 PF13147.1 gi|313126209|ref|YP_004036479.1| - 3.5e-20 73.1 11.8 3.5e-20 73.1 8.2 2.2 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|313126209|ref|YP_004036479.1| - 2.3e-16 60.3 2.5 5.3e-16 59.1 1.7 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313126209|ref|YP_004036479.1| - 2.8e-15 55.8 0.0 1.3e-14 53.7 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313126209|ref|YP_004036479.1| - 0.00013 21.3 13.3 0.0095 15.1 3.9 2.9 1 1 0 2 2 2 2 Amidohydrolase family Arginase PF00491.16 gi|313126210|ref|YP_004036480.1| - 2e-63 214.2 2.1 2.5e-63 213.9 1.5 1.0 1 0 0 1 1 1 1 Arginase family Urocanase PF01175.13 gi|313126211|ref|YP_004036481.1| - 6.1e-256 849.7 0.0 7.6e-256 849.3 0.0 1.0 1 0 0 1 1 1 1 Urocanase DUF2188 PF09954.4 gi|313126211|ref|YP_004036481.1| - 0.043 13.7 0.2 0.13 12.2 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) Imm5 PF14423.1 gi|313126211|ref|YP_004036481.1| - 0.044 13.4 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Immunity protein Imm5 HTH_10 PF04967.7 gi|313126212|ref|YP_004036482.1| - 1.7e-19 69.1 0.0 2.9e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|313126212|ref|YP_004036482.1| - 4.3e-06 25.9 0.0 3e-05 23.2 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|313126212|ref|YP_004036482.1| - 1.6e-05 24.1 0.1 3.9e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|313126212|ref|YP_004036482.1| - 0.00013 21.3 0.7 0.0016 17.8 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|313126212|ref|YP_004036482.1| - 0.00023 21.2 0.3 0.00062 19.9 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|313126212|ref|YP_004036482.1| - 0.00092 18.7 0.1 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|313126212|ref|YP_004036482.1| - 0.0012 18.4 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|313126212|ref|YP_004036482.1| - 0.0012 18.8 0.2 0.0027 17.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313126212|ref|YP_004036482.1| - 0.011 15.3 0.4 0.56 9.9 0.1 2.6 2 1 0 2 2 2 0 MarR family TetR_N PF00440.18 gi|313126212|ref|YP_004036482.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_20 PF12840.2 gi|313126212|ref|YP_004036482.1| - 0.016 14.9 0.1 0.061 13.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313126212|ref|YP_004036482.1| - 0.02 14.6 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|313126212|ref|YP_004036482.1| - 0.033 13.5 0.1 0.072 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|313126212|ref|YP_004036482.1| - 0.047 13.2 0.8 0.52 9.9 0.2 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_17 PF12728.2 gi|313126212|ref|YP_004036482.1| - 0.055 13.7 0.1 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|313126212|ref|YP_004036482.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|313126212|ref|YP_004036482.1| - 0.1 12.1 0.1 0.39 10.3 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain MMR_HSR1_C PF08438.5 gi|313126214|ref|YP_004036484.1| - 7e-29 100.2 0.0 1.2e-28 99.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|313126214|ref|YP_004036484.1| - 9.3e-20 70.7 0.0 6.2e-18 64.8 0.0 2.8 3 1 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.16 gi|313126214|ref|YP_004036484.1| - 1.1e-11 44.4 0.0 2.2e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|313126214|ref|YP_004036484.1| - 4.8e-05 22.6 0.0 0.00033 19.9 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|313126214|ref|YP_004036484.1| - 0.0077 16.0 0.2 0.41 10.4 0.0 3.0 3 0 0 3 3 3 1 Dynamin family Miro PF08477.8 gi|313126214|ref|YP_004036484.1| - 0.011 16.1 0.0 0.035 14.5 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein GTP_EFTU PF00009.22 gi|313126214|ref|YP_004036484.1| - 0.023 14.1 0.0 0.058 12.8 0.0 1.7 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain MG1 PF11974.3 gi|313126217|ref|YP_004036487.1| - 1.2e-05 25.7 22.7 0.035 14.6 1.4 3.4 1 1 2 3 3 3 3 Alpha-2-macroglobulin MG1 domain DUF1939 PF09154.5 gi|313126217|ref|YP_004036487.1| - 0.00012 21.9 14.4 0.064 13.1 0.1 5.8 3 3 1 4 4 4 2 Domain of unknown function (DUF1939) Cna_B PF05738.8 gi|313126217|ref|YP_004036487.1| - 0.015 15.0 20.0 0.35 10.6 0.9 4.4 3 1 0 3 3 3 0 Cna protein B-type domain Calx-beta PF03160.9 gi|313126217|ref|YP_004036487.1| - 0.44 10.5 30.3 0.065 13.1 3.7 3.4 1 1 2 3 3 3 0 Calx-beta domain DUF3568 PF12092.3 gi|313126217|ref|YP_004036487.1| - 3.4 7.4 19.1 0.94 9.2 2.6 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3568) TBP PF00352.16 gi|313126218|ref|YP_004036488.1| - 6e-65 214.6 0.0 4e-32 109.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|313126218|ref|YP_004036488.1| - 0.00019 21.4 0.0 0.58 10.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|313126218|ref|YP_004036488.1| - 0.17 11.1 0.6 8.1 5.8 0.2 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 MarR_2 PF12802.2 gi|313126219|ref|YP_004036489.1| - 4.8e-07 29.3 0.0 9.7e-07 28.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313126219|ref|YP_004036489.1| - 0.00021 20.8 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313126219|ref|YP_004036489.1| - 0.00031 20.4 0.0 0.00066 19.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313126219|ref|YP_004036489.1| - 0.0009 19.5 0.0 0.0034 17.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain Crp PF00325.15 gi|313126219|ref|YP_004036489.1| - 0.0016 17.8 0.1 0.0067 15.8 0.0 2.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, crp family HTH_45 PF14947.1 gi|313126219|ref|YP_004036489.1| - 0.0023 17.7 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|313126219|ref|YP_004036489.1| - 0.0063 16.1 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313126219|ref|YP_004036489.1| - 0.007 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|313126219|ref|YP_004036489.1| - 0.0079 15.8 0.1 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|313126219|ref|YP_004036489.1| - 0.027 13.8 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|313126219|ref|YP_004036489.1| - 0.031 14.0 0.0 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|313126219|ref|YP_004036489.1| - 0.035 14.2 0.0 0.069 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Cdc6_C PF09079.6 gi|313126220|ref|YP_004036490.1| - 5.6e-18 64.4 0.1 1.1e-17 63.4 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|313126220|ref|YP_004036490.1| - 1.4e-15 57.5 0.2 3.5e-15 56.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313126220|ref|YP_004036490.1| - 1e-13 51.7 2.3 4.6e-12 46.3 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|313126220|ref|YP_004036490.1| - 7.1e-07 29.4 0.2 2.4e-06 27.7 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313126220|ref|YP_004036490.1| - 2.3e-06 27.3 0.0 7.5e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|313126220|ref|YP_004036490.1| - 7.8e-06 25.4 0.0 1.7e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|313126220|ref|YP_004036490.1| - 6.5e-05 22.6 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.9 gi|313126220|ref|YP_004036490.1| - 0.00017 21.5 0.1 0.00029 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|313126220|ref|YP_004036490.1| - 0.00071 19.6 0.0 0.0014 18.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|313126220|ref|YP_004036490.1| - 0.00084 18.3 0.0 0.0015 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) KAP_NTPase PF07693.9 gi|313126220|ref|YP_004036490.1| - 0.0012 17.8 0.3 0.19 10.6 0.0 2.3 1 1 0 2 2 2 1 KAP family P-loop domain RNA_helicase PF00910.17 gi|313126220|ref|YP_004036490.1| - 0.002 18.2 0.0 0.0043 17.2 0.0 1.6 1 0 0 1 1 1 1 RNA helicase PhoH PF02562.11 gi|313126220|ref|YP_004036490.1| - 0.0049 16.1 1.4 2.1 7.5 0.0 2.6 2 1 1 3 3 3 2 PhoH-like protein DEAD PF00270.24 gi|313126220|ref|YP_004036490.1| - 0.0057 16.1 2.1 0.61 9.5 1.4 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|313126220|ref|YP_004036490.1| - 0.0061 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|313126220|ref|YP_004036490.1| - 0.0063 15.4 0.0 0.0098 14.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_24 PF13479.1 gi|313126220|ref|YP_004036490.1| - 0.014 14.9 0.1 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|313126220|ref|YP_004036490.1| - 0.014 14.3 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) FtsK_SpoIIIE PF01580.13 gi|313126220|ref|YP_004036490.1| - 0.025 14.0 0.1 0.07 12.5 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|313126220|ref|YP_004036490.1| - 0.033 13.9 0.2 0.098 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|313126220|ref|YP_004036490.1| - 0.042 12.9 0.0 0.082 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|313126220|ref|YP_004036490.1| - 0.046 13.1 0.3 0.15 11.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|313126220|ref|YP_004036490.1| - 0.046 12.6 0.0 0.071 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|313126220|ref|YP_004036490.1| - 0.079 13.7 0.5 0.25 12.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|313126220|ref|YP_004036490.1| - 0.084 12.2 0.4 0.36 10.2 0.2 2.0 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|313126220|ref|YP_004036490.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|313126220|ref|YP_004036490.1| - 0.11 12.7 0.1 0.22 11.8 0.1 1.9 1 1 0 1 1 1 0 ABC transporter SNF2_N PF00176.18 gi|313126222|ref|YP_004036492.1| - 1.1e-17 63.8 0.0 1.7e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|313126222|ref|YP_004036492.1| - 2.6e-17 63.2 0.0 5.2e-17 62.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|313126222|ref|YP_004036492.1| - 5.9e-13 48.4 0.1 1.6e-12 47.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|313126222|ref|YP_004036492.1| - 7.3e-07 28.8 0.0 1.5e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase MarR_2 PF12802.2 gi|313126222|ref|YP_004036492.1| - 0.00023 20.7 0.6 0.00063 19.3 0.4 1.8 1 0 0 1 1 1 1 MarR family AAA_19 PF13245.1 gi|313126222|ref|YP_004036492.1| - 0.00026 20.6 0.4 0.0014 18.3 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain TrmB PF01978.14 gi|313126222|ref|YP_004036492.1| - 0.0021 17.7 0.0 0.0056 16.3 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Zeta_toxin PF06414.7 gi|313126222|ref|YP_004036492.1| - 0.0045 16.1 0.2 0.067 12.2 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_22 PF13401.1 gi|313126222|ref|YP_004036492.1| - 0.0051 16.9 0.4 0.086 12.9 0.3 2.7 1 1 0 1 1 1 1 AAA domain MarR PF01047.17 gi|313126222|ref|YP_004036492.1| - 0.03 14.0 0.0 0.078 12.6 0.0 1.8 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|313126222|ref|YP_004036492.1| - 0.033 14.1 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|313126222|ref|YP_004036492.1| - 0.033 14.5 0.0 0.14 12.4 0.0 2.1 2 0 0 2 2 1 0 Winged helix DNA-binding domain AAA_25 PF13481.1 gi|313126222|ref|YP_004036492.1| - 0.034 13.5 0.1 0.22 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain HTH_24 PF13412.1 gi|313126222|ref|YP_004036492.1| - 0.036 13.4 0.2 0.25 10.7 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding AAA PF00004.24 gi|313126222|ref|YP_004036492.1| - 0.076 13.2 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) LRRNT_2 PF08263.7 gi|313126222|ref|YP_004036492.1| - 0.17 11.8 0.1 0.43 10.5 0.1 1.6 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain Methyltransf_26 PF13659.1 gi|313126224|ref|YP_004036494.1| - 9e-15 54.7 0.9 3.3e-14 52.9 0.6 2.0 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|313126224|ref|YP_004036494.1| - 3.3e-05 23.1 0.0 9.9e-05 21.5 0.0 1.7 1 1 0 1 1 1 1 N-6 DNA Methylase TaqI_C PF12950.2 gi|313126224|ref|YP_004036494.1| - 0.0044 16.7 0.0 0.0086 15.8 0.0 1.4 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_31 PF13847.1 gi|313126224|ref|YP_004036494.1| - 0.018 14.6 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|313126224|ref|YP_004036494.1| - 0.046 13.2 0.0 0.12 11.9 0.0 1.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Phageshock_PspD PF09584.5 gi|313126224|ref|YP_004036494.1| - 0.21 11.3 0.7 8 6.2 0.0 3.0 3 0 0 3 3 3 0 Phage shock protein PspD (Phageshock_PspD) MaoC_dehydratas PF01575.14 gi|313126226|ref|YP_004036496.1| - 2.6e-26 91.4 0.0 3.3e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313126226|ref|YP_004036496.1| - 4.5e-09 36.1 0.0 9.2e-09 35.1 0.0 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|313126226|ref|YP_004036496.1| - 0.0046 16.4 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain 4HBT_2 PF13279.1 gi|313126226|ref|YP_004036496.1| - 0.034 14.6 0.0 0.036 14.5 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily 4HBT PF03061.17 gi|313126226|ref|YP_004036496.1| - 0.052 13.6 0.0 0.088 12.9 0.0 1.5 1 1 0 1 1 1 0 Thioesterase superfamily YiiD_Cterm PF09500.5 gi|313126226|ref|YP_004036496.1| - 0.12 11.8 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) Abhydrolase_6 PF12697.2 gi|313126227|ref|YP_004036497.1| - 2.7e-38 132.1 5.7 3.1e-38 131.9 4.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313126227|ref|YP_004036497.1| - 8.4e-24 83.9 0.1 1.2e-23 83.4 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313126227|ref|YP_004036497.1| - 5e-21 75.3 0.1 6.1e-14 52.1 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|313126227|ref|YP_004036497.1| - 4.9e-05 22.8 0.0 0.00079 18.9 0.0 2.5 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase DLH PF01738.13 gi|313126227|ref|YP_004036497.1| - 9.1e-05 21.8 0.1 0.0022 17.3 0.1 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|313126227|ref|YP_004036497.1| - 0.00011 21.5 0.3 0.0052 16.0 0.0 2.5 2 1 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|313126227|ref|YP_004036497.1| - 0.00063 19.5 0.0 0.0014 18.4 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Thioesterase PF00975.15 gi|313126227|ref|YP_004036497.1| - 0.0034 17.6 0.2 0.0055 16.9 0.2 1.6 1 1 0 1 1 1 1 Thioesterase domain LIP PF03583.9 gi|313126227|ref|YP_004036497.1| - 0.017 14.3 0.1 0.041 13.0 0.0 1.8 2 1 0 2 2 2 0 Secretory lipase Ndr PF03096.9 gi|313126227|ref|YP_004036497.1| - 0.044 12.2 0.0 0.069 11.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family Hydrolase_4 PF12146.3 gi|313126227|ref|YP_004036497.1| - 0.046 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase Esterase_phd PF10503.4 gi|313126227|ref|YP_004036497.1| - 0.07 12.3 1.9 0.74 9.0 0.1 2.2 2 0 0 2 2 2 0 Esterase PHB depolymerase UPF0227 PF05728.7 gi|313126227|ref|YP_004036497.1| - 0.1 12.3 0.0 0.96 9.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) DUF915 PF06028.6 gi|313126227|ref|YP_004036497.1| - 0.14 11.2 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) AMP-binding PF00501.23 gi|313126228|ref|YP_004036498.1| - 1.8e-91 306.5 0.0 2.5e-91 306.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313126228|ref|YP_004036498.1| - 1.1e-14 55.0 0.1 2.6e-14 53.9 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.7 gi|313126229|ref|YP_004036499.1| - 2.9e-14 52.3 0.0 4.7e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|313126229|ref|YP_004036499.1| - 0.029 14.0 0.0 0.069 12.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|313126229|ref|YP_004036499.1| - 0.057 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|313126229|ref|YP_004036499.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Peripla_BP_6 PF13458.1 gi|313126230|ref|YP_004036500.1| - 6.2e-56 190.2 14.4 8.4e-56 189.7 10.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|313126230|ref|YP_004036500.1| - 1.6e-17 63.2 3.1 2.4e-17 62.7 2.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|313126230|ref|YP_004036500.1| - 2.2e-09 36.5 1.7 3e-09 36.1 1.2 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region ABC_tran PF00005.22 gi|313126231|ref|YP_004036501.1| - 3.8e-23 82.3 0.0 5.5e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|313126231|ref|YP_004036501.1| - 2.8e-10 39.6 0.1 7.2e-10 38.3 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|313126231|ref|YP_004036501.1| - 2.4e-09 37.5 0.0 0.0017 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|313126231|ref|YP_004036501.1| - 3.5e-07 30.7 0.0 4.2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313126231|ref|YP_004036501.1| - 0.00098 18.6 0.1 0.0018 17.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|313126231|ref|YP_004036501.1| - 0.0025 17.4 0.2 0.0082 15.7 0.2 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313126231|ref|YP_004036501.1| - 0.0063 15.7 0.1 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|313126231|ref|YP_004036501.1| - 0.0084 15.3 0.2 0.1 11.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|313126231|ref|YP_004036501.1| - 0.04 13.7 0.4 0.07 13.0 0.2 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|313126231|ref|YP_004036501.1| - 0.064 13.2 0.1 0.091 12.7 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|313126231|ref|YP_004036501.1| - 0.11 12.6 0.3 0.65 10.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.13 gi|313126231|ref|YP_004036501.1| - 0.37 10.0 2.3 0.43 9.8 0.1 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B ABC_tran PF00005.22 gi|313126232|ref|YP_004036502.1| - 3.3e-31 108.4 0.0 4.2e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126232|ref|YP_004036502.1| - 2.3e-08 34.3 0.0 0.0014 18.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313126232|ref|YP_004036502.1| - 9.2e-05 21.8 0.0 0.00021 20.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|313126232|ref|YP_004036502.1| - 0.00056 19.3 0.2 0.0012 18.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|313126232|ref|YP_004036502.1| - 0.0015 18.8 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313126232|ref|YP_004036502.1| - 0.002 18.1 1.1 0.007 16.3 0.8 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126232|ref|YP_004036502.1| - 0.0021 18.1 0.1 0.0064 16.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|313126232|ref|YP_004036502.1| - 0.0074 15.1 0.1 0.011 14.5 0.1 1.2 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|313126232|ref|YP_004036502.1| - 0.0075 15.9 0.2 0.014 15.0 0.0 1.5 2 0 0 2 2 2 1 NACHT domain DUF3584 PF12128.3 gi|313126232|ref|YP_004036502.1| - 0.0096 13.3 0.5 0.014 12.7 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MobB PF03205.9 gi|313126232|ref|YP_004036502.1| - 0.014 15.0 0.5 0.035 13.8 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|313126232|ref|YP_004036502.1| - 0.027 13.9 0.1 0.044 13.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|313126232|ref|YP_004036502.1| - 0.03 13.5 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.10 gi|313126232|ref|YP_004036502.1| - 0.036 13.7 0.2 0.077 12.7 0.2 1.8 1 1 0 1 1 1 0 NTPase Miro PF08477.8 gi|313126232|ref|YP_004036502.1| - 0.041 14.3 0.0 0.063 13.7 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|313126232|ref|YP_004036502.1| - 0.048 13.2 1.4 0.17 11.4 0.0 2.2 2 1 1 3 3 3 0 AAA domain DUF258 PF03193.11 gi|313126232|ref|YP_004036502.1| - 0.057 12.6 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|313126232|ref|YP_004036502.1| - 0.057 13.0 0.1 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MukB PF04310.7 gi|313126232|ref|YP_004036502.1| - 0.068 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal FtsK_SpoIIIE PF01580.13 gi|313126232|ref|YP_004036502.1| - 0.072 12.5 0.1 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|313126232|ref|YP_004036502.1| - 0.074 13.8 0.2 0.23 12.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|313126232|ref|YP_004036502.1| - 0.076 13.2 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|313126232|ref|YP_004036502.1| - 0.15 12.0 0.1 0.22 11.4 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_2 PF02653.11 gi|313126233|ref|YP_004036503.1| - 2.9e-38 131.3 43.6 3.6e-38 131.0 30.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|313126234|ref|YP_004036504.1| - 2.5e-32 111.9 23.1 2.5e-32 111.9 16.0 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ACP_syn_III_C PF08541.5 gi|313126235|ref|YP_004036505.1| - 1.9e-16 59.8 0.2 1.5e-13 50.5 0.0 3.0 3 1 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|313126235|ref|YP_004036505.1| - 4.4e-11 42.2 0.3 9.5e-11 41.2 0.2 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|313126235|ref|YP_004036505.1| - 0.0014 18.1 2.7 2.4 7.5 0.3 3.2 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain 4HBT_2 PF13279.1 gi|313126236|ref|YP_004036506.1| - 5.8e-17 62.2 0.0 7.1e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|313126236|ref|YP_004036506.1| - 5.4e-14 52.0 0.1 7.3e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|313126236|ref|YP_004036506.1| - 8e-11 41.3 0.1 0.00015 20.7 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase Paramyxo_PCT PF14320.1 gi|313126236|ref|YP_004036506.1| - 0.072 11.9 0.2 0.1 11.4 0.2 1.2 1 0 0 1 1 1 0 Phosphoprotein P region PCT disordered PTPS PF01242.14 gi|313126237|ref|YP_004036507.1| - 3e-25 88.2 0.0 3.8e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|313126238|ref|YP_004036508.1| - 4.8e-23 82.1 0.1 1.9e-22 80.2 0.1 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|313126238|ref|YP_004036508.1| - 1.1e-17 64.1 0.0 1.9e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|313126238|ref|YP_004036508.1| - 2.4e-09 37.4 0.0 3.7e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|313126238|ref|YP_004036508.1| - 0.021 14.5 0.0 0.046 13.4 0.0 1.5 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Herpes_U34 PF04541.8 gi|313126238|ref|YP_004036508.1| - 0.13 11.1 0.0 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus virion protein U34 QueC PF06508.8 gi|313126239|ref|YP_004036509.1| - 2.7e-71 239.2 0.1 3e-71 239.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|313126239|ref|YP_004036509.1| - 3.2e-06 26.7 0.0 7.9e-06 25.4 0.0 1.6 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|313126239|ref|YP_004036509.1| - 0.00055 18.6 0.0 0.0007 18.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|313126239|ref|YP_004036509.1| - 0.0069 15.3 0.0 0.0096 14.8 0.0 1.3 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|313126239|ref|YP_004036509.1| - 0.014 14.8 0.1 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase Usp PF00582.21 gi|313126239|ref|YP_004036509.1| - 0.015 15.4 0.1 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Universal stress protein family ThiC PF01964.13 gi|313126241|ref|YP_004036511.1| - 1.4e-190 633.3 0.0 1.6e-190 633.1 0.0 1.0 1 0 0 1 1 1 1 ThiC family Binary_toxB PF03495.9 gi|313126241|ref|YP_004036511.1| - 0.021 13.4 0.1 0.029 13.0 0.0 1.1 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA zf-ribbon_3 PF13248.1 gi|313126241|ref|YP_004036511.1| - 0.082 12.1 0.3 0.16 11.2 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain EamA PF00892.15 gi|313126242|ref|YP_004036512.1| - 6.3e-23 81.1 26.4 2.4e-12 47.0 7.5 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|313126242|ref|YP_004036512.1| - 9.1e-08 32.3 31.7 1.2e-07 31.9 4.0 3.5 3 1 1 4 4 4 3 Multidrug resistance efflux transporter 2TM PF13239.1 gi|313126242|ref|YP_004036512.1| - 0.34 10.9 2.8 4.1 7.5 0.5 2.7 2 0 0 2 2 2 0 2TM domain Response_reg PF00072.19 gi|313126243|ref|YP_004036513.1| - 2.3e-21 75.8 0.0 2.1e-20 72.7 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|313126243|ref|YP_004036513.1| - 1.7e-19 69.5 0.0 3.6e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313126243|ref|YP_004036513.1| - 4.8e-14 52.1 3.7 3.3e-13 49.3 0.2 3.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|313126243|ref|YP_004036513.1| - 7.1e-11 42.3 0.0 2.7e-10 40.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS PF00989.19 gi|313126243|ref|YP_004036513.1| - 1.8e-08 34.1 0.0 5.1e-08 32.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|313126243|ref|YP_004036513.1| - 2.1e-08 34.4 0.1 6e-08 33.0 0.0 1.8 2 0 0 2 2 1 1 PAS domain GAF PF01590.21 gi|313126243|ref|YP_004036513.1| - 8.5e-07 29.2 0.1 5.4e-06 26.6 0.0 2.4 2 1 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|313126243|ref|YP_004036513.1| - 1.4e-06 28.2 1.4 6.9e-06 26.0 0.0 2.7 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|313126243|ref|YP_004036513.1| - 2e-05 24.2 0.0 6.9e-05 22.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|313126243|ref|YP_004036513.1| - 0.00033 20.3 0.0 0.001 18.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313126243|ref|YP_004036513.1| - 0.00074 19.5 0.0 0.0019 18.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.10 gi|313126243|ref|YP_004036513.1| - 0.0018 18.2 0.0 0.0097 15.9 0.0 2.3 2 1 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF_2 PF13185.1 gi|313126243|ref|YP_004036513.1| - 0.0039 17.6 0.0 0.012 16.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain Amidohydro_1 PF01979.15 gi|313126244|ref|YP_004036514.1| - 0.092 12.3 0.0 0.099 12.2 0.0 1.0 1 0 0 1 1 1 0 Amidohydrolase family ABC2_membrane PF01061.19 gi|313126244|ref|YP_004036514.1| - 0.45 9.6 2.7 0.55 9.3 1.9 1.0 1 0 0 1 1 1 0 ABC-2 type transporter Polyketide_cyc PF03364.15 gi|313126245|ref|YP_004036515.1| - 5.3e-08 32.9 0.0 6.6e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|313126245|ref|YP_004036515.1| - 0.00043 20.4 0.1 0.00049 20.2 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Glucodextran_N PF09137.6 gi|313126246|ref|YP_004036516.1| - 9.3e-39 133.2 0.2 4.6e-37 127.7 0.1 2.3 1 1 0 1 1 1 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.16 gi|313126246|ref|YP_004036516.1| - 5.4e-32 110.9 0.2 9e-23 80.5 0.0 4.3 2 2 0 3 3 3 3 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|313126246|ref|YP_004036516.1| - 0.0017 18.3 1.6 1.8 8.6 0.1 3.7 2 2 1 3 3 3 2 Prenyltransferase-like GHL5 PF14872.1 gi|313126247|ref|YP_004036517.1| - 3.6e-243 808.9 0.0 8.2e-242 804.4 0.0 2.0 1 1 0 1 1 1 1 Hypothetical glycoside hydrolase 5 zf-ribbon_3 PF13248.1 gi|313126248|ref|YP_004036518.1| - 6.7e-05 21.9 3.1 0.11 11.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|313126248|ref|YP_004036518.1| - 0.00014 21.5 2.7 0.015 15.1 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-nanos PF05741.8 gi|313126248|ref|YP_004036518.1| - 0.00054 19.8 3.7 0.14 12.1 0.2 2.1 1 1 1 2 2 2 2 Nanos RNA binding domain UPF0547 PF10571.4 gi|313126248|ref|YP_004036518.1| - 0.0025 17.4 3.0 0.47 10.1 0.3 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|313126248|ref|YP_004036518.1| - 0.0031 17.4 3.3 0.0077 16.1 2.3 1.6 1 1 0 1 1 1 1 Zinc ribbon domain YhfH PF14149.1 gi|313126248|ref|YP_004036518.1| - 0.0053 16.5 0.8 0.14 11.9 0.0 2.2 2 0 0 2 2 2 1 YhfH-like protein Lar_restr_allev PF14354.1 gi|313126248|ref|YP_004036518.1| - 0.0055 16.9 1.9 0.014 15.7 1.3 1.7 1 1 0 1 1 1 1 Restriction alleviation protein Lar DUF35_N PF12172.3 gi|313126248|ref|YP_004036518.1| - 0.0068 16.2 2.5 2.3 8.2 0.0 2.2 1 1 1 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|313126248|ref|YP_004036518.1| - 0.0099 15.3 5.3 0.46 10.0 0.3 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|313126248|ref|YP_004036518.1| - 0.011 15.7 6.9 0.48 10.5 0.5 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|313126248|ref|YP_004036518.1| - 0.012 15.3 2.1 0.029 14.2 1.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|313126248|ref|YP_004036518.1| - 0.016 14.9 1.2 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|313126248|ref|YP_004036518.1| - 0.024 14.3 0.4 0.03 14.0 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-TFIIB PF13453.1 gi|313126248|ref|YP_004036518.1| - 0.028 13.5 2.1 0.057 12.6 1.4 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|313126248|ref|YP_004036518.1| - 0.029 14.3 4.0 2.3 8.2 0.4 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2296 PF10058.4 gi|313126248|ref|YP_004036518.1| - 0.041 13.6 1.1 0.65 9.7 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) CpXC PF14353.1 gi|313126248|ref|YP_004036518.1| - 0.041 13.8 3.0 3.4 7.6 0.1 2.2 1 1 0 2 2 2 0 CpXC protein DUF1610 PF07754.6 gi|313126248|ref|YP_004036518.1| - 0.043 13.9 7.8 0.9 9.7 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Di19 PF05605.7 gi|313126248|ref|YP_004036518.1| - 0.045 13.8 0.3 2.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding OrfB_Zn_ribbon PF07282.6 gi|313126248|ref|YP_004036518.1| - 0.049 13.2 2.8 3.9 7.2 0.1 1.9 1 1 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|313126248|ref|YP_004036518.1| - 0.052 13.4 4.1 0.25 11.2 0.0 2.6 3 0 0 3 3 2 0 Rubredoxin zf-DNL PF05180.7 gi|313126248|ref|YP_004036518.1| - 0.062 13.0 2.1 0.099 12.3 1.5 1.5 1 1 0 1 1 1 0 DNL zinc finger PolC_DP2 PF03833.8 gi|313126248|ref|YP_004036518.1| - 0.08 10.5 0.1 0.08 10.5 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 TFIIS_C PF01096.13 gi|313126248|ref|YP_004036518.1| - 0.094 12.3 2.4 7.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.14 gi|313126248|ref|YP_004036518.1| - 0.11 12.0 2.2 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|313126248|ref|YP_004036518.1| - 0.12 11.8 4.0 1.1 8.8 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.21 gi|313126248|ref|YP_004036518.1| - 0.13 12.6 2.7 3.1 8.3 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.1 gi|313126248|ref|YP_004036518.1| - 0.13 11.8 3.1 6.7 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|313126248|ref|YP_004036518.1| - 0.14 12.0 0.5 0.19 11.6 0.3 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family Cys_rich_CPXG PF14255.1 gi|313126248|ref|YP_004036518.1| - 0.15 11.8 3.6 1.5 8.7 0.3 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_3 PF14369.1 gi|313126248|ref|YP_004036518.1| - 0.19 11.7 6.3 3 7.9 0.3 2.3 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_4 PF13717.1 gi|313126248|ref|YP_004036518.1| - 0.19 11.4 3.2 8.2 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|313126248|ref|YP_004036518.1| - 0.19 11.3 3.6 3.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Sgf11 PF08209.6 gi|313126248|ref|YP_004036518.1| - 0.2 10.9 1.1 8.2 5.8 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|313126248|ref|YP_004036518.1| - 0.28 10.8 4.0 2.1 8.1 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal RRN7 PF11781.3 gi|313126248|ref|YP_004036518.1| - 0.29 10.6 3.1 2.2 7.8 0.6 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF329 PF03884.9 gi|313126248|ref|YP_004036518.1| - 0.33 10.5 3.4 6.6 6.3 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-H2C2_2 PF13465.1 gi|313126248|ref|YP_004036518.1| - 0.39 11.1 4.1 12 6.3 0.1 2.3 1 1 1 2 2 2 0 Zinc-finger double domain Methyltransf_13 PF08421.6 gi|313126248|ref|YP_004036518.1| - 0.46 10.0 4.4 5 6.6 0.1 2.5 2 1 1 3 3 2 0 Putative zinc binding domain FYDLN_acid PF09538.5 gi|313126248|ref|YP_004036518.1| - 0.53 10.8 2.3 1.9 9.0 1.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TerY-C PF15616.1 gi|313126248|ref|YP_004036518.1| - 0.54 10.1 3.4 14 5.5 2.4 2.1 1 1 0 1 1 1 0 TerY-C metal binding domain zf-HIT PF04438.11 gi|313126248|ref|YP_004036518.1| - 0.55 9.9 2.6 8.3 6.1 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|313126248|ref|YP_004036518.1| - 0.81 9.0 10.0 0.92 8.8 0.4 2.5 2 1 0 3 3 2 0 TFIIB zinc-binding zf-tcix PF14952.1 gi|313126248|ref|YP_004036518.1| - 0.85 9.0 6.3 6 6.2 0.3 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF164 PF02591.10 gi|313126248|ref|YP_004036518.1| - 0.91 9.3 5.6 3 7.7 0.2 2.3 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-Mss51 PF13824.1 gi|313126248|ref|YP_004036518.1| - 1.1 9.1 4.6 4.5 7.1 3.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.11 gi|313126248|ref|YP_004036518.1| - 1.2 8.9 7.2 4.5 7.0 1.1 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain ADK_lid PF05191.9 gi|313126248|ref|YP_004036518.1| - 1.5 8.5 4.2 17 5.1 0.3 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Prok-RING_1 PF14446.1 gi|313126248|ref|YP_004036518.1| - 2.4 7.9 6.2 36 4.1 4.3 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|313126248|ref|YP_004036518.1| - 2.6 7.6 5.0 3.3 7.3 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|313126248|ref|YP_004036518.1| - 3.3 7.4 5.8 0.88 9.2 0.1 2.3 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS PMT_2 PF13231.1 gi|313126250|ref|YP_004036520.1| - 3.3e-14 53.0 20.8 9.3e-14 51.6 7.6 3.0 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.12 gi|313126250|ref|YP_004036520.1| - 0.009 15.0 0.5 0.009 15.0 0.3 1.7 2 0 0 2 2 2 1 Alg9-like mannosyltransferase family ABC_tran PF00005.22 gi|313126252|ref|YP_004036522.1| - 3.4e-34 118.0 0.0 5.3e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313126252|ref|YP_004036522.1| - 9.2e-08 31.9 0.9 2.4e-07 30.6 0.2 2.1 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.1 gi|313126252|ref|YP_004036522.1| - 4.3e-07 30.1 0.0 0.0017 18.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313126252|ref|YP_004036522.1| - 8.5e-07 29.1 0.1 1.6e-06 28.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|313126252|ref|YP_004036522.1| - 0.00026 19.8 0.0 0.00038 19.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|313126252|ref|YP_004036522.1| - 0.00093 19.3 0.6 0.0053 16.8 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313126252|ref|YP_004036522.1| - 0.0022 18.2 0.0 0.014 15.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|313126252|ref|YP_004036522.1| - 0.003 17.4 0.1 0.014 15.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|313126252|ref|YP_004036522.1| - 0.01 15.7 0.2 0.12 12.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|313126252|ref|YP_004036522.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|313126252|ref|YP_004036522.1| - 0.017 14.9 0.3 0.085 12.7 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|313126252|ref|YP_004036522.1| - 0.022 13.7 0.0 0.063 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|313126252|ref|YP_004036522.1| - 0.023 15.5 0.1 0.053 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|313126252|ref|YP_004036522.1| - 0.06 13.6 0.0 0.15 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|313126252|ref|YP_004036522.1| - 0.064 12.1 0.0 0.091 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|313126252|ref|YP_004036522.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313126252|ref|YP_004036522.1| - 0.19 11.4 0.8 0.41 10.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.17 gi|313126253|ref|YP_004036523.1| - 4.2e-24 85.0 37.2 1.3e-13 50.8 2.5 3.8 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|313126254|ref|YP_004036524.1| - 1.2e-17 64.0 0.0 1.5e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|313126254|ref|YP_004036524.1| - 5e-10 39.5 0.0 7.3e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313126254|ref|YP_004036524.1| - 7.8e-10 38.7 0.4 2.5e-09 37.1 0.2 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313126254|ref|YP_004036524.1| - 0.0011 18.8 0.0 0.0034 17.1 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|313126254|ref|YP_004036524.1| - 0.0038 16.3 0.5 0.011 14.9 0.4 1.8 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|313126254|ref|YP_004036524.1| - 1.1 9.4 6.4 0.14 12.2 1.1 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence RGP PF03214.8 gi|313126255|ref|YP_004036525.1| - 5.3e-16 58.3 0.0 8e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide EF1_GNE PF00736.14 gi|313126255|ref|YP_004036525.1| - 0.13 11.9 0.1 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 EF-1 guanine nucleotide exchange domain HPP PF04982.8 gi|313126256|ref|YP_004036526.1| - 2.5e-09 37.0 8.9 4.5e-09 36.1 6.2 1.4 1 0 0 1 1 1 1 HPP family DEAD PF00270.24 gi|313126257|ref|YP_004036527.1| - 4.1e-21 75.2 0.0 6.1e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|313126257|ref|YP_004036527.1| - 8.7e-19 67.8 0.1 2.4e-18 66.4 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|313126257|ref|YP_004036527.1| - 1e-08 34.8 0.0 5e-08 32.6 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF393 PF04134.7 gi|313126258|ref|YP_004036528.1| - 2.3e-06 28.6 0.0 3.2e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DUF123 PF01986.11 gi|313126259|ref|YP_004036529.1| - 3.3e-26 91.2 0.0 4.1e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 MarR_2 PF12802.2 gi|313126260|ref|YP_004036530.1| - 1.1e-06 28.2 0.6 2.7e-06 26.9 0.4 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313126260|ref|YP_004036530.1| - 1.2e-05 24.8 0.0 2.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313126260|ref|YP_004036530.1| - 1.5e-05 24.6 0.1 3.5e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|313126260|ref|YP_004036530.1| - 2.7e-05 23.5 0.1 6.7e-05 22.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|313126260|ref|YP_004036530.1| - 3.1e-05 24.1 0.1 7.5e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313126260|ref|YP_004036530.1| - 0.00017 21.1 0.0 0.00045 19.7 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313126260|ref|YP_004036530.1| - 0.00028 20.6 0.0 0.00056 19.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|313126260|ref|YP_004036530.1| - 0.00055 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313126260|ref|YP_004036530.1| - 0.00088 18.6 0.2 0.0043 16.4 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|313126260|ref|YP_004036530.1| - 0.00089 18.8 0.0 0.002 17.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|313126260|ref|YP_004036530.1| - 0.0012 18.6 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|313126260|ref|YP_004036530.1| - 0.0013 18.3 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313126260|ref|YP_004036530.1| - 0.0032 17.2 0.0 0.0077 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|313126260|ref|YP_004036530.1| - 0.0043 16.6 0.2 0.0043 16.6 0.1 2.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|313126260|ref|YP_004036530.1| - 0.0089 15.5 0.1 0.019 14.5 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|313126260|ref|YP_004036530.1| - 0.0092 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.1 gi|313126260|ref|YP_004036530.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RP-C PF03428.8 gi|313126260|ref|YP_004036530.1| - 0.041 13.3 0.0 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_Tnp_4 PF13613.1 gi|313126260|ref|YP_004036530.1| - 0.09 12.3 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Rrf2 PF02082.15 gi|313126260|ref|YP_004036530.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_41 PF14502.1 gi|313126260|ref|YP_004036530.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|313126261|ref|YP_004036531.1| - 4.9e-28 98.1 0.0 3.4e-27 95.3 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Deltaretro_Tax PF05599.6 gi|313126261|ref|YP_004036531.1| - 0.093 13.0 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Deltaretrovirus Tax protein FAD-oxidase_C PF02913.14 gi|313126262|ref|YP_004036532.1| - 7.3e-65 218.7 0.2 1.5e-64 217.7 0.1 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|313126262|ref|YP_004036532.1| - 9.3e-43 145.0 0.3 2.1e-42 143.8 0.2 1.7 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|313126262|ref|YP_004036532.1| - 4.3e-08 33.0 0.0 2.7e-05 24.0 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|313126262|ref|YP_004036532.1| - 2.7e-07 30.5 5.0 5.4e-07 29.5 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|313126262|ref|YP_004036532.1| - 3.4e-07 30.4 3.2 7.7e-07 29.3 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313126262|ref|YP_004036532.1| - 1.8e-05 25.0 1.2 0.00011 22.5 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313126262|ref|YP_004036532.1| - 0.00015 21.4 3.7 0.0019 17.9 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313126262|ref|YP_004036532.1| - 0.0012 19.0 3.6 0.012 15.8 0.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|313126262|ref|YP_004036532.1| - 0.019 14.0 0.0 0.042 13.0 0.0 1.5 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|313126262|ref|YP_004036532.1| - 0.034 13.9 0.4 0.034 13.9 0.3 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313126262|ref|YP_004036532.1| - 0.054 13.8 7.6 4.6 7.7 5.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain PP2C_C PF07830.8 gi|313126262|ref|YP_004036532.1| - 0.081 13.0 0.1 0.45 10.6 0.0 2.2 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Fer4_16 PF13484.1 gi|313126262|ref|YP_004036532.1| - 0.081 13.6 1.3 0.37 11.5 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|313126262|ref|YP_004036532.1| - 0.13 11.9 14.8 0.033 13.7 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|313126262|ref|YP_004036532.1| - 1.2 9.7 6.7 0.29 11.7 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|313126262|ref|YP_004036532.1| - 1.3 9.0 11.2 0.079 12.8 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|313126262|ref|YP_004036532.1| - 5.1 7.2 11.9 0.28 11.1 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.9 gi|313126263|ref|YP_004036533.1| - 2.1e-104 349.9 40.5 7.2e-104 348.1 28.1 1.7 1 1 0 1 1 1 1 L-lactate permease HTH_20 PF12840.2 gi|313126264|ref|YP_004036534.1| - 2.2e-05 24.1 0.1 3.6e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313126264|ref|YP_004036534.1| - 0.00024 20.6 0.0 0.00042 19.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313126264|ref|YP_004036534.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|313126264|ref|YP_004036534.1| - 0.042 13.3 0.1 0.066 12.7 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|313126264|ref|YP_004036534.1| - 0.062 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|313126264|ref|YP_004036534.1| - 0.096 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|313126264|ref|YP_004036534.1| - 0.11 12.1 0.2 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 MarR family DUF162 PF02589.10 gi|313126266|ref|YP_004036536.1| - 7.9e-20 71.1 0.0 8.8e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DUF162 PF02589.10 gi|313126267|ref|YP_004036537.1| - 1.2e-41 142.2 0.2 2e-41 141.5 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|313126267|ref|YP_004036537.1| - 1.2e-08 34.8 4.4 2.4e-08 33.8 3.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313126267|ref|YP_004036537.1| - 4.4e-08 33.4 4.8 1.4e-05 25.4 0.4 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313126267|ref|YP_004036537.1| - 1.6e-07 30.9 2.6 0.00074 19.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313126267|ref|YP_004036537.1| - 1.6e-06 28.3 3.5 4.5e-06 26.9 2.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|313126267|ref|YP_004036537.1| - 6.7e-06 26.3 3.0 1.5e-05 25.1 2.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313126267|ref|YP_004036537.1| - 0.0001 21.7 13.2 0.00014 21.3 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313126267|ref|YP_004036537.1| - 0.00022 21.4 11.0 0.0029 17.8 7.9 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313126267|ref|YP_004036537.1| - 0.00023 20.8 12.8 0.00032 20.4 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|313126267|ref|YP_004036537.1| - 0.00031 20.4 12.0 0.0038 17.0 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313126267|ref|YP_004036537.1| - 0.00052 19.8 10.7 0.0035 17.1 7.4 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|313126267|ref|YP_004036537.1| - 0.0045 17.2 14.9 0.011 16.0 2.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|313126267|ref|YP_004036537.1| - 0.018 14.6 2.2 0.054 13.1 0.1 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|313126267|ref|YP_004036537.1| - 0.047 14.2 17.1 0.035 14.6 3.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|313126267|ref|YP_004036537.1| - 0.34 11.6 9.2 1.4 9.7 6.4 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|313126267|ref|YP_004036537.1| - 1.3 9.6 6.1 0.44 11.1 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain PRC PF05239.11 gi|313126268|ref|YP_004036538.1| - 5.2e-13 48.6 0.3 6.5e-13 48.3 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|313126268|ref|YP_004036538.1| - 0.15 11.6 0.6 0.23 10.9 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3315) TrkA_N PF02254.13 gi|313126269|ref|YP_004036539.1| - 1.6e-22 79.7 1.7 3.8e-22 78.4 1.2 1.7 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|313126269|ref|YP_004036539.1| - 1.3e-13 50.8 0.2 3.7e-13 49.3 0.0 1.8 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.12 gi|313126269|ref|YP_004036539.1| - 6.4e-09 36.1 0.2 2.4e-08 34.3 0.1 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|313126269|ref|YP_004036539.1| - 2e-08 34.4 1.2 3.2e-08 33.8 0.4 1.7 2 0 0 2 2 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|313126269|ref|YP_004036539.1| - 4.8e-08 32.3 0.3 8.2e-08 31.6 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DHHA1 PF02272.14 gi|313126269|ref|YP_004036539.1| - 6.8e-07 28.9 0.5 3e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 DHHA1 domain ApbA PF02558.11 gi|313126269|ref|YP_004036539.1| - 7.9e-07 28.6 0.0 1.7e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|313126269|ref|YP_004036539.1| - 1.2e-06 27.9 0.2 2.3e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|313126269|ref|YP_004036539.1| - 1.9e-05 24.4 0.0 3.8e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|313126269|ref|YP_004036539.1| - 3.2e-05 23.8 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|313126269|ref|YP_004036539.1| - 5.8e-05 22.5 0.1 0.00018 20.9 0.0 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|313126269|ref|YP_004036539.1| - 9e-05 22.5 0.1 0.00019 21.5 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|313126269|ref|YP_004036539.1| - 0.00013 22.1 1.6 0.00032 20.9 0.8 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|313126269|ref|YP_004036539.1| - 0.0015 17.7 0.0 0.003 16.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|313126269|ref|YP_004036539.1| - 0.0016 18.1 0.1 0.0038 16.9 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|313126269|ref|YP_004036539.1| - 0.0032 17.7 0.5 0.024 14.9 0.1 2.3 1 1 1 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|313126269|ref|YP_004036539.1| - 0.0033 16.5 0.0 0.0053 15.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain ThiF PF00899.16 gi|313126269|ref|YP_004036539.1| - 0.0034 17.2 0.8 0.014 15.1 0.6 2.1 1 1 0 1 1 1 1 ThiF family ADH_zinc_N PF00107.21 gi|313126269|ref|YP_004036539.1| - 0.0045 16.5 0.2 0.065 12.7 0.0 2.8 4 0 0 4 4 3 1 Zinc-binding dehydrogenase DAO PF01266.19 gi|313126269|ref|YP_004036539.1| - 0.0053 15.6 0.1 0.017 14.0 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Epimerase PF01370.16 gi|313126269|ref|YP_004036539.1| - 0.012 15.0 0.4 0.13 11.6 0.1 2.1 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family NAD_binding_8 PF13450.1 gi|313126269|ref|YP_004036539.1| - 0.018 15.0 0.0 0.048 13.6 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF364 PF04016.7 gi|313126269|ref|YP_004036539.1| - 0.029 13.7 0.1 0.059 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF364) UPF0146 PF03686.8 gi|313126269|ref|YP_004036539.1| - 0.083 12.7 1.9 0.23 11.3 0.4 2.3 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) ELFV_dehydrog PF00208.16 gi|313126269|ref|YP_004036539.1| - 0.095 12.2 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KR PF08659.5 gi|313126269|ref|YP_004036539.1| - 0.097 12.3 2.3 1.6 8.3 1.0 2.9 1 1 1 2 2 2 0 KR domain adh_short PF00106.20 gi|313126269|ref|YP_004036539.1| - 0.1 12.5 7.5 0.046 13.6 1.1 3.0 2 1 1 3 3 3 0 short chain dehydrogenase AsnC_trans_reg PF01037.16 gi|313126271|ref|YP_004036541.1| - 2.2e-09 36.8 0.4 2.2e-09 36.8 0.3 1.5 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|313126271|ref|YP_004036541.1| - 6.2e-09 35.1 0.0 1.2e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313126271|ref|YP_004036541.1| - 1.3e-05 24.9 0.3 2.9e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313126271|ref|YP_004036541.1| - 6.8e-05 22.3 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313126271|ref|YP_004036541.1| - 0.00051 19.6 0.0 0.00086 18.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313126271|ref|YP_004036541.1| - 0.0039 16.8 0.0 0.0078 15.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313126271|ref|YP_004036541.1| - 0.007 16.0 0.1 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|313126271|ref|YP_004036541.1| - 0.014 15.6 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HisG PF01634.13 gi|313126271|ref|YP_004036541.1| - 0.027 14.0 0.1 0.032 13.7 0.1 1.2 1 0 0 1 1 1 0 ATP phosphoribosyltransferase TFIIE_alpha PF02002.12 gi|313126271|ref|YP_004036541.1| - 0.084 12.3 0.0 0.29 10.6 0.0 1.9 1 1 1 2 2 2 0 TFIIE alpha subunit B-block_TFIIIC PF04182.7 gi|313126271|ref|YP_004036541.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC EamA PF00892.15 gi|313126272|ref|YP_004036542.1| - 1e-38 132.1 33.5 8e-22 77.6 6.8 2.6 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|313126272|ref|YP_004036542.1| - 0.021 15.0 10.2 0.021 15.0 7.1 3.7 1 1 3 4 4 4 0 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|313126272|ref|YP_004036542.1| - 0.041 12.9 0.2 0.041 12.9 0.1 2.2 2 0 0 2 2 2 0 Nucleotide-sugar transporter UAA PF08449.6 gi|313126272|ref|YP_004036542.1| - 0.043 12.7 8.9 0.067 12.1 6.0 1.4 1 1 0 1 1 1 0 UAA transporter family TPT PF03151.11 gi|313126272|ref|YP_004036542.1| - 0.049 13.2 26.5 0.35 10.4 8.9 2.7 3 0 0 3 3 3 0 Triose-phosphate Transporter family DUF2048 PF09752.4 gi|313126274|ref|YP_004036544.1| - 1.2e-11 44.1 0.0 1.8e-09 36.9 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2048) Abhydrolase_6 PF12697.2 gi|313126274|ref|YP_004036544.1| - 4.6e-10 39.7 5.7 4.6e-10 39.7 3.9 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313126274|ref|YP_004036544.1| - 1.2e-09 38.0 0.0 2.3e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|313126274|ref|YP_004036544.1| - 0.0054 16.0 0.0 0.014 14.7 0.0 1.6 1 0 0 1 1 1 1 Dienelactone hydrolase family tRNA-synt_2b PF00587.20 gi|313126275|ref|YP_004036545.1| - 6.7e-40 136.4 0.0 1.3e-39 135.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|313126275|ref|YP_004036545.1| - 7.1e-19 67.5 0.4 4.7e-18 64.9 0.1 2.4 2 0 0 2 2 2 1 Anticodon binding domain TGS PF02824.16 gi|313126275|ref|YP_004036545.1| - 9.1e-13 47.8 0.3 2.2e-12 46.6 0.2 1.7 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.9 gi|313126275|ref|YP_004036545.1| - 2.5e-11 43.2 0.0 4.9e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain ThiS PF02597.15 gi|313126275|ref|YP_004036545.1| - 0.00096 19.5 3.9 0.015 15.7 0.2 3.2 3 0 0 3 3 3 1 ThiS family Polysacc_deac_1 PF01522.16 gi|313126275|ref|YP_004036545.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 Polysaccharide deacetylase Glyco_hydro_77 PF02446.12 gi|313126276|ref|YP_004036546.1| - 2.6e-131 438.6 0.0 3.3e-131 438.2 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase HTH_24 PF13412.1 gi|313126277|ref|YP_004036547.1| - 3.5e-13 48.7 0.6 5.2e-13 48.1 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313126277|ref|YP_004036547.1| - 2e-10 40.0 2.0 4.6e-10 38.8 1.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313126277|ref|YP_004036547.1| - 1.1e-07 31.4 0.0 1.8e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313126277|ref|YP_004036547.1| - 1.1e-07 31.3 0.2 1.2e-06 28.0 0.1 2.1 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|313126277|ref|YP_004036547.1| - 6e-06 26.0 0.0 1.1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|313126277|ref|YP_004036547.1| - 3.2e-05 23.6 0.1 5.8e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|313126277|ref|YP_004036547.1| - 7.2e-05 22.2 0.3 0.00015 21.2 0.1 1.7 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|313126277|ref|YP_004036547.1| - 0.00019 21.0 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|313126277|ref|YP_004036547.1| - 0.00024 20.4 0.2 0.00089 18.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family AsnC_trans_reg PF01037.16 gi|313126277|ref|YP_004036547.1| - 0.00071 19.2 0.2 0.0024 17.5 0.0 1.8 2 0 0 2 2 2 1 AsnC family Rrf2 PF02082.15 gi|313126277|ref|YP_004036547.1| - 0.0014 18.7 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|313126277|ref|YP_004036547.1| - 0.002 18.1 0.1 0.0037 17.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313126277|ref|YP_004036547.1| - 0.0022 17.6 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|313126277|ref|YP_004036547.1| - 0.0032 16.8 0.1 0.0062 15.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|313126277|ref|YP_004036547.1| - 0.0034 16.8 0.3 0.0066 15.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313126277|ref|YP_004036547.1| - 0.0037 16.8 0.0 0.0076 15.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|313126277|ref|YP_004036547.1| - 0.0045 16.5 0.2 0.0089 15.5 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.1 gi|313126277|ref|YP_004036547.1| - 0.0046 16.5 0.1 0.0097 15.5 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HrcA_DNA-bdg PF03444.10 gi|313126277|ref|YP_004036547.1| - 0.0065 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.14 gi|313126277|ref|YP_004036547.1| - 0.0066 15.7 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Put_DNA-bind_N PF06971.8 gi|313126277|ref|YP_004036547.1| - 0.0072 16.0 0.3 0.018 14.7 0.2 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus DDRGK PF09756.4 gi|313126277|ref|YP_004036547.1| - 0.0097 15.3 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain HTH_29 PF13551.1 gi|313126277|ref|YP_004036547.1| - 0.012 15.7 0.1 0.047 13.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_30 PF13556.1 gi|313126277|ref|YP_004036547.1| - 0.018 14.6 0.1 0.036 13.6 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_27 PF13463.1 gi|313126277|ref|YP_004036547.1| - 0.022 15.0 0.1 0.04 14.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Tnp_Tc3_2 PF01498.13 gi|313126277|ref|YP_004036547.1| - 0.022 14.7 0.1 0.044 13.8 0.1 1.5 1 0 0 1 1 1 0 Transposase TrmB PF01978.14 gi|313126277|ref|YP_004036547.1| - 0.023 14.3 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|313126277|ref|YP_004036547.1| - 0.034 13.3 0.2 0.057 12.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.22 gi|313126277|ref|YP_004036547.1| - 0.035 13.8 0.3 0.076 12.7 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|313126277|ref|YP_004036547.1| - 0.044 13.0 0.2 0.17 11.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|313126277|ref|YP_004036547.1| - 0.045 13.5 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PaaX PF07848.7 gi|313126277|ref|YP_004036547.1| - 0.051 13.5 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein RPA_C PF08784.6 gi|313126277|ref|YP_004036547.1| - 0.053 13.9 0.1 0.2 12.1 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal DUF2250 PF10007.4 gi|313126277|ref|YP_004036547.1| - 0.088 12.7 0.0 0.4 10.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_6 PF01418.12 gi|313126277|ref|YP_004036547.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family TFIIE_alpha PF02002.12 gi|313126277|ref|YP_004036547.1| - 0.13 11.7 0.0 0.29 10.6 0.0 1.6 2 0 0 2 2 1 0 TFIIE alpha subunit HTH_12 PF08461.5 gi|313126277|ref|YP_004036547.1| - 0.15 11.7 0.5 0.44 10.2 0.1 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain DUF21 PF01595.15 gi|313126278|ref|YP_004036548.1| - 8.1e-29 100.2 1.9 1.1e-28 99.8 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|313126278|ref|YP_004036548.1| - 8.1e-15 54.3 1.9 1.9e-08 33.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain DUF4066 PF13278.1 gi|313126279|ref|YP_004036549.1| - 9.2e-35 119.3 0.4 1.1e-34 119.1 0.3 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|313126279|ref|YP_004036549.1| - 7.2e-17 61.2 0.1 9.8e-17 60.7 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family OGG_N PF07934.7 gi|313126280|ref|YP_004036550.1| - 9e-18 64.3 0.0 1.4e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|313126280|ref|YP_004036550.1| - 2.3e-11 43.9 0.0 3.6e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF555 PF04475.7 gi|313126281|ref|YP_004036551.1| - 7.1e-38 128.7 0.2 9.3e-38 128.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) PIN PF01850.16 gi|313126281|ref|YP_004036551.1| - 0.12 12.7 0.4 0.17 12.1 0.2 1.4 1 1 0 1 1 1 0 PIN domain UPF0058 PF01893.11 gi|313126282|ref|YP_004036552.1| - 3.8e-21 74.9 0.2 4.4e-21 74.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 CdCA1 PF10563.4 gi|313126282|ref|YP_004036552.1| - 0.13 11.7 0.0 0.14 11.6 0.0 1.0 1 0 0 1 1 1 0 Cadmium carbonic anhydrase repeat eIF-5_eIF-2B PF01873.12 gi|313126283|ref|YP_004036553.1| - 2.9e-34 117.4 0.0 3.4e-34 117.2 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 OxoDH_E1alpha_N PF12573.3 gi|313126283|ref|YP_004036553.1| - 0.022 14.2 0.1 0.087 12.3 0.0 2.0 2 0 0 2 2 2 0 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal SUI1 PF01253.17 gi|313126283|ref|YP_004036553.1| - 0.032 14.0 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor SUI1 zinc_ribbon_5 PF13719.1 gi|313126284|ref|YP_004036554.1| - 0.00019 20.9 0.1 0.00027 20.4 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313126284|ref|YP_004036554.1| - 0.00022 20.8 0.1 0.0003 20.3 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|313126284|ref|YP_004036554.1| - 0.0043 16.8 0.6 0.0077 16.0 0.4 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Stc1 PF12898.2 gi|313126284|ref|YP_004036554.1| - 0.0071 16.3 1.1 0.0098 15.9 0.7 1.3 1 1 0 1 1 1 1 Stc1 domain zf-Mss51 PF13824.1 gi|313126284|ref|YP_004036554.1| - 0.0076 16.0 1.0 0.029 14.2 0.9 1.7 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|313126284|ref|YP_004036554.1| - 0.02 14.0 1.9 2 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|313126284|ref|YP_004036554.1| - 0.021 14.1 0.6 3.9 6.8 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|313126284|ref|YP_004036554.1| - 0.021 14.5 1.5 0.13 12.0 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|313126284|ref|YP_004036554.1| - 0.027 13.9 1.8 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|313126284|ref|YP_004036554.1| - 0.027 14.1 1.4 0.092 12.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_3 PF13878.1 gi|313126284|ref|YP_004036554.1| - 0.029 13.9 0.2 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.2 gi|313126284|ref|YP_004036554.1| - 0.034 13.9 1.5 0.066 13.0 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|313126284|ref|YP_004036554.1| - 0.041 13.5 1.0 0.12 12.0 0.0 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like ADK_lid PF05191.9 gi|313126284|ref|YP_004036554.1| - 0.064 12.9 0.5 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid CpXC PF14353.1 gi|313126284|ref|YP_004036554.1| - 0.071 13.0 0.2 6.4 6.7 0.0 2.1 2 0 0 2 2 2 0 CpXC protein DUF2752 PF10825.3 gi|313126284|ref|YP_004036554.1| - 0.078 13.0 0.2 1.3 9.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) OrfB_Zn_ribbon PF07282.6 gi|313126284|ref|YP_004036554.1| - 0.081 12.5 0.6 0.14 11.8 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|313126284|ref|YP_004036554.1| - 0.091 12.4 0.2 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|313126284|ref|YP_004036554.1| - 0.091 12.4 0.7 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2_6 PF13912.1 gi|313126284|ref|YP_004036554.1| - 0.11 12.4 0.4 11 6.0 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|313126284|ref|YP_004036554.1| - 0.11 12.8 0.8 12 6.4 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain GATA PF00320.22 gi|313126284|ref|YP_004036554.1| - 0.2 11.0 2.3 1.8 7.9 1.5 2.1 1 1 1 2 2 2 0 GATA zinc finger DUF4379 PF14311.1 gi|313126284|ref|YP_004036554.1| - 0.21 11.4 1.5 0.47 10.3 0.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) TFIIS_C PF01096.13 gi|313126284|ref|YP_004036554.1| - 0.22 11.1 1.5 3.9 7.1 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|313126284|ref|YP_004036554.1| - 0.45 10.5 3.6 5.2 7.1 0.2 2.1 1 1 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.6 gi|313126284|ref|YP_004036554.1| - 0.67 10.1 3.5 1.2 9.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) YhfH PF14149.1 gi|313126284|ref|YP_004036554.1| - 0.79 9.5 2.9 7.1 6.5 0.0 2.4 2 1 0 2 2 2 0 YhfH-like protein TFIIB PF00382.14 gi|313126285|ref|YP_004036555.1| - 1.7e-40 136.6 0.2 2e-19 69.1 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313126285|ref|YP_004036555.1| - 3.5e-17 61.4 1.6 8.1e-17 60.2 1.1 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|313126285|ref|YP_004036555.1| - 0.0026 17.5 0.5 0.0048 16.6 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon Sigma70_r4 PF04545.11 gi|313126285|ref|YP_004036555.1| - 0.017 14.3 2.1 0.087 12.1 0.1 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|313126285|ref|YP_004036555.1| - 0.021 14.4 0.5 0.044 13.4 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|313126285|ref|YP_004036555.1| - 0.035 14.0 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-ribbon_3 PF13248.1 gi|313126285|ref|YP_004036555.1| - 0.038 13.2 0.7 0.073 12.2 0.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|313126285|ref|YP_004036555.1| - 0.052 13.0 1.0 0.12 11.9 0.7 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|313126285|ref|YP_004036555.1| - 0.053 13.2 0.1 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit HTH_24 PF13412.1 gi|313126285|ref|YP_004036555.1| - 0.053 12.9 0.2 0.12 11.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Lar_restr_allev PF14354.1 gi|313126285|ref|YP_004036555.1| - 3.8 7.8 5.3 0.63 10.3 0.7 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|313126285|ref|YP_004036555.1| - 4 7.4 5.2 2.3 8.2 0.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Alpha-amylase PF00128.19 gi|313126286|ref|YP_004036556.1| - 0.025 13.9 0.3 0.11 11.8 0.0 1.8 1 1 1 2 2 2 0 Alpha amylase, catalytic domain CopD PF05425.8 gi|313126287|ref|YP_004036557.1| - 0.0039 17.3 3.5 0.14 12.3 0.1 2.1 1 1 1 2 2 2 2 Copper resistance protein D DUF2583 PF10762.4 gi|313126287|ref|YP_004036557.1| - 3.7 7.7 8.7 1.9 8.6 3.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) HTH_33 PF13592.1 gi|313126288|ref|YP_004036558.1| - 0.12 11.9 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Nop PF01798.13 gi|313126289|ref|YP_004036559.1| - 3.7e-43 146.3 0.0 6.1e-43 145.6 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain PhoU PF01895.14 gi|313126289|ref|YP_004036559.1| - 0.15 12.4 2.3 5.3 7.5 0.2 2.9 3 0 0 3 3 3 0 PhoU domain EspB PF05802.6 gi|313126289|ref|YP_004036559.1| - 0.36 9.7 4.3 0.13 11.1 1.0 1.6 2 0 0 2 2 2 0 Enterobacterial EspB protein Fibrillarin PF01269.12 gi|313126290|ref|YP_004036560.1| - 3.5e-53 179.8 0.0 4.3e-53 179.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCS2 PF04107.8 gi|313126291|ref|YP_004036561.1| - 7.2e-74 248.4 0.1 8.4e-74 248.2 0.0 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|313126291|ref|YP_004036561.1| - 0.0012 18.5 0.2 0.84 9.2 0.0 2.7 3 0 0 3 3 3 2 Putative amidoligase enzyme TrmB PF01978.14 gi|313126292|ref|YP_004036562.1| - 1.4e-06 27.8 0.0 2.2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|313126292|ref|YP_004036562.1| - 1.4e-05 24.5 0.0 1.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|313126292|ref|YP_004036562.1| - 3.5e-05 23.0 0.0 6.1e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313126292|ref|YP_004036562.1| - 6.1e-05 22.7 0.1 0.00012 21.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313126292|ref|YP_004036562.1| - 0.00041 19.9 0.0 0.00061 19.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313126292|ref|YP_004036562.1| - 0.00074 19.1 0.1 0.0022 17.6 0.0 1.8 2 0 0 2 2 2 1 MarR family GntR PF00392.16 gi|313126292|ref|YP_004036562.1| - 0.00083 18.7 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|313126292|ref|YP_004036562.1| - 0.0019 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|313126292|ref|YP_004036562.1| - 0.0038 17.2 0.0 0.018 15.1 0.0 1.9 2 0 0 2 2 2 1 Transposase Rrf2 PF02082.15 gi|313126292|ref|YP_004036562.1| - 0.041 14.0 0.0 0.069 13.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|313126292|ref|YP_004036562.1| - 0.043 13.5 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family Sulfolobus_pRN PF05584.6 gi|313126292|ref|YP_004036562.1| - 0.09 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF3369 PF11849.3 gi|313126292|ref|YP_004036562.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3369) CTP_transf_2 PF01467.21 gi|313126293|ref|YP_004036563.1| - 4.7e-12 46.2 0.0 4e-10 39.9 0.0 2.1 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|313126293|ref|YP_004036563.1| - 0.0062 16.1 0.2 0.03 13.9 0.1 2.1 1 1 1 2 2 2 1 FAD synthetase TFIIB PF00382.14 gi|313126294|ref|YP_004036564.1| - 2.2e-05 24.1 0.6 4.2e-05 23.2 0.4 1.5 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.11 gi|313126294|ref|YP_004036564.1| - 0.06 12.6 0.9 0.076 12.3 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 Eco57I PF07669.6 gi|313126295|ref|YP_004036565.1| - 1.4e-17 63.9 0.0 3.2e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|313126295|ref|YP_004036565.1| - 2.3e-16 59.8 0.0 3.8e-09 36.0 0.0 2.3 2 0 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|313126295|ref|YP_004036565.1| - 7.9e-16 57.8 0.0 1.6e-15 56.8 0.0 1.6 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_26 PF13659.1 gi|313126295|ref|YP_004036565.1| - 3.2e-13 49.7 0.0 2.7e-11 43.4 0.0 3.6 3 1 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.13 gi|313126295|ref|YP_004036565.1| - 1.6e-05 24.5 0.0 0.0016 18.0 0.0 2.3 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.1 gi|313126295|ref|YP_004036565.1| - 4.7e-05 23.1 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Cas_Cas4 PF01930.12 gi|313126295|ref|YP_004036565.1| - 0.025 14.5 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|313126295|ref|YP_004036565.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Cons_hypoth95 PF03602.10 gi|313126295|ref|YP_004036565.1| - 0.14 11.5 0.0 4.4 6.6 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical protein 95 HSDR_N_2 PF13588.1 gi|313126296|ref|YP_004036566.1| - 2.7e-12 46.4 0.0 5.2e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|313126296|ref|YP_004036566.1| - 9.9e-07 28.6 3.4 1.4e-05 24.9 0.0 3.3 3 2 2 5 5 5 1 Type I restriction enzyme R protein N terminus (HSDR_N) Med8 PF10232.4 gi|313126296|ref|YP_004036566.1| - 0.31 10.5 3.7 0.55 9.7 2.6 1.4 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 Syntaxin-6_N PF09177.6 gi|313126296|ref|YP_004036566.1| - 0.57 10.6 5.9 13 6.2 1.4 2.9 3 1 0 3 3 3 0 Syntaxin 6, N-terminal DisA_N PF02457.11 gi|313126297|ref|YP_004036567.1| - 8.5e-26 89.4 0.0 1.5e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.13 gi|313126298|ref|YP_004036568.1| - 2.5e-15 56.3 1.0 2.5e-15 56.3 0.7 2.8 3 1 1 4 4 4 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|313126298|ref|YP_004036568.1| - 7.4e-09 35.1 3.9 9.4e-07 28.4 0.5 4.0 3 1 1 4 4 4 2 Conserved TM helix Fimbrial_PilY2 PF14481.1 gi|313126298|ref|YP_004036568.1| - 0.071 12.5 0.1 0.17 11.3 0.0 1.7 1 1 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 DUF373 PF04123.8 gi|313126298|ref|YP_004036568.1| - 0.24 10.3 12.4 0.34 9.8 8.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Peptidase_M50 PF02163.17 gi|313126298|ref|YP_004036568.1| - 0.3 10.0 1.8 1.1 8.1 1.3 1.9 1 1 0 1 1 1 0 Peptidase family M50 Cytochrom_B558a PF05038.8 gi|313126298|ref|YP_004036568.1| - 1.6 8.3 5.3 0.59 9.7 0.1 2.5 1 1 2 3 3 3 0 Cytochrome Cytochrome b558 alpha-subunit HATPase_c PF02518.21 gi|313126299|ref|YP_004036569.1| - 8.3e-15 54.4 0.0 1.7e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313126299|ref|YP_004036569.1| - 1e-09 38.6 0.0 2.8e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|313126299|ref|YP_004036569.1| - 2.3e-05 24.3 0.1 7e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|313126299|ref|YP_004036569.1| - 4.9e-05 23.1 0.1 9.7e-05 22.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|313126299|ref|YP_004036569.1| - 0.0002 21.1 0.0 0.00066 19.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.1 gi|313126299|ref|YP_004036569.1| - 0.0021 17.6 1.4 0.0044 16.5 0.9 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.20 gi|313126299|ref|YP_004036569.1| - 0.0085 16.0 0.8 0.018 14.9 0.6 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|313126299|ref|YP_004036569.1| - 0.019 14.7 0.1 0.071 12.9 0.0 2.0 2 1 0 2 2 2 0 PAS fold PAS_3 PF08447.6 gi|313126299|ref|YP_004036569.1| - 0.027 14.5 0.0 0.24 11.5 0.0 2.3 2 0 0 2 2 2 0 PAS fold Hexapep PF00132.19 gi|313126300|ref|YP_004036570.1| - 3.2e-11 42.2 7.1 1.2e-09 37.2 0.2 3.0 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313126300|ref|YP_004036570.1| - 4.8e-10 38.8 4.6 8.9e-09 34.7 0.1 2.7 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase GARS_A PF01071.14 gi|313126301|ref|YP_004036571.1| - 5e-54 182.8 0.2 7.2e-54 182.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|313126301|ref|YP_004036571.1| - 3.6e-24 85.1 0.4 7.2e-24 84.1 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|313126301|ref|YP_004036571.1| - 9e-21 73.8 0.3 4.3e-20 71.6 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|313126301|ref|YP_004036571.1| - 3.8e-20 72.3 0.1 7.6e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|313126301|ref|YP_004036571.1| - 2.9e-07 29.5 0.0 1.5e-06 27.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|313126301|ref|YP_004036571.1| - 9.3e-05 22.3 0.0 0.00017 21.5 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|313126301|ref|YP_004036571.1| - 0.028 13.6 0.0 0.097 11.9 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_S9 PF00326.16 gi|313126302|ref|YP_004036572.1| - 4.4e-63 212.3 0.0 7.8e-63 211.5 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.10 gi|313126302|ref|YP_004036572.1| - 5e-57 193.3 0.1 6e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_5 PF12695.2 gi|313126302|ref|YP_004036572.1| - 0.00062 19.5 0.0 0.0031 17.2 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase family PQQ_2 PF13360.1 gi|313126303|ref|YP_004036573.1| - 3.5e-12 46.2 20.1 1.5e-07 31.0 4.4 3.8 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|313126303|ref|YP_004036573.1| - 4e-08 32.4 11.3 0.2 11.2 0.0 5.8 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|313126303|ref|YP_004036573.1| - 7.2e-05 22.9 24.7 1.6 9.0 0.1 8.2 6 2 1 7 7 7 4 PQQ-like domain TAT_signal PF10518.4 gi|313126303|ref|YP_004036573.1| - 0.21 11.6 3.2 1.2 9.3 2.2 2.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Thioredox_DsbH PF03190.10 gi|313126304|ref|YP_004036574.1| - 9.4e-74 246.5 0.0 1.4e-73 245.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|313126304|ref|YP_004036574.1| - 7.8e-12 45.0 0.0 1.6e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|313126304|ref|YP_004036574.1| - 0.00031 19.8 0.0 0.21 10.5 0.0 2.3 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.1 gi|313126304|ref|YP_004036574.1| - 0.03 14.5 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|313126304|ref|YP_004036574.1| - 0.036 13.1 0.1 0.17 10.9 0.0 2.0 2 0 0 2 2 2 0 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.9 gi|313126304|ref|YP_004036574.1| - 0.1 11.9 0.0 11 5.2 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 Thioredoxin PF00085.15 gi|313126306|ref|YP_004036576.1| - 1.8e-05 24.3 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|313126306|ref|YP_004036576.1| - 0.0017 18.0 0.0 0.003 17.2 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|313126306|ref|YP_004036576.1| - 0.029 14.4 0.1 2.6 8.1 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like DUF2816 PF10992.3 gi|313126306|ref|YP_004036576.1| - 0.046 13.3 3.1 0.96 9.0 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2816) Thioredoxin_2 PF13098.1 gi|313126306|ref|YP_004036576.1| - 0.055 13.6 0.1 0.24 11.6 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|313126306|ref|YP_004036576.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like PALP PF00291.20 gi|313126307|ref|YP_004036577.1| - 1.9e-59 201.3 0.2 2.5e-59 200.9 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|313126307|ref|YP_004036577.1| - 0.045 13.2 0.2 0.21 11.1 0.1 2.1 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Abhydrolase_6 PF12697.2 gi|313126308|ref|YP_004036578.1| - 4.6e-45 154.2 3.0 5.6e-45 153.9 2.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313126308|ref|YP_004036578.1| - 1.3e-21 76.8 0.0 1.5e-20 73.4 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313126308|ref|YP_004036578.1| - 4.2e-21 75.5 0.0 7.2e-20 71.5 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|313126308|ref|YP_004036578.1| - 1.7e-05 24.5 0.0 5.4e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 Putative lysophospholipase Ndr PF03096.9 gi|313126308|ref|YP_004036578.1| - 0.0026 16.2 0.0 0.012 14.0 0.0 1.8 2 0 0 2 2 2 1 Ndr family Abhydrolase_2 PF02230.11 gi|313126308|ref|YP_004036578.1| - 0.003 17.0 0.0 0.79 9.1 0.0 2.9 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|313126308|ref|YP_004036578.1| - 0.0033 17.1 0.0 0.86 9.2 0.0 2.4 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|313126308|ref|YP_004036578.1| - 0.0096 15.3 0.1 0.017 14.5 0.0 1.3 1 0 0 1 1 1 1 Putative esterase FSH1 PF03959.8 gi|313126308|ref|YP_004036578.1| - 0.012 15.0 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DLH PF01738.13 gi|313126308|ref|YP_004036578.1| - 0.043 13.1 0.0 1.2 8.3 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF2048 PF09752.4 gi|313126308|ref|YP_004036578.1| - 0.058 12.2 0.0 0.29 9.9 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Abhydrolase_4 PF08386.5 gi|313126308|ref|YP_004036578.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein OrfB_Zn_ribbon PF07282.6 gi|313126309|ref|YP_004036579.1| - 2.2e-22 78.4 1.9 6.7e-22 76.9 0.4 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|313126309|ref|YP_004036579.1| - 1.7e-07 30.8 0.0 3.1e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Probable transposase C1_3 PF07649.7 gi|313126309|ref|YP_004036579.1| - 0.031 14.3 2.4 0.059 13.4 1.7 1.4 1 0 0 1 1 1 0 C1-like domain HypA PF01155.14 gi|313126309|ref|YP_004036579.1| - 0.052 13.2 0.1 0.096 12.3 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Pox_A_type_inc PF04508.7 gi|313126309|ref|YP_004036579.1| - 0.089 12.6 1.0 0.29 11.0 0.7 1.9 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat PHD PF00628.24 gi|313126309|ref|YP_004036579.1| - 0.13 11.9 3.4 0.11 12.2 0.8 2.0 2 0 0 2 2 2 0 PHD-finger zinc_ribbon_2 PF13240.1 gi|313126309|ref|YP_004036579.1| - 0.48 9.9 4.1 0.62 9.6 1.9 2.0 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313126309|ref|YP_004036579.1| - 0.55 9.5 3.0 2.8 7.2 2.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain NAGLU_N PF12971.2 gi|313126310|ref|YP_004036580.1| - 0.11 12.1 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain ThiI PF02568.9 gi|313126312|ref|YP_004036582.1| - 2.5e-42 144.5 0.0 3.8e-42 143.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|313126312|ref|YP_004036582.1| - 9.5e-17 61.2 0.0 1.7e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Asn_synthase PF00733.16 gi|313126312|ref|YP_004036582.1| - 0.0062 16.0 0.2 0.085 12.3 0.0 2.3 2 1 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|313126312|ref|YP_004036582.1| - 0.0067 15.7 0.0 1.6 7.9 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|313126312|ref|YP_004036582.1| - 0.014 13.9 0.0 0.022 13.3 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|313126312|ref|YP_004036582.1| - 0.055 12.9 0.0 0.85 9.0 0.0 2.2 2 0 0 2 2 2 0 PP-loop family DAO PF01266.19 gi|313126313|ref|YP_004036583.1| - 6.3e-67 226.0 0.1 7.1e-67 225.8 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313126313|ref|YP_004036583.1| - 2.1e-05 24.6 0.0 0.023 14.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|313126313|ref|YP_004036583.1| - 0.0025 16.9 0.3 0.0043 16.1 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.11 gi|313126313|ref|YP_004036583.1| - 0.0038 16.6 0.1 0.0062 15.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.19 gi|313126313|ref|YP_004036583.1| - 0.0045 16.1 0.1 0.016 14.3 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|313126313|ref|YP_004036583.1| - 0.013 15.1 0.2 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|313126313|ref|YP_004036583.1| - 0.019 14.8 0.0 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313126313|ref|YP_004036583.1| - 0.024 13.1 0.0 2.9 6.2 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.12 gi|313126313|ref|YP_004036583.1| - 0.027 13.5 0.4 0.055 12.5 0.0 1.6 2 0 0 2 2 2 0 Thi4 family ThiF PF00899.16 gi|313126313|ref|YP_004036583.1| - 0.029 14.1 0.2 0.051 13.4 0.1 1.3 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.15 gi|313126313|ref|YP_004036583.1| - 0.042 13.9 0.1 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.2 gi|313126313|ref|YP_004036583.1| - 0.062 12.3 0.0 0.083 11.9 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313126313|ref|YP_004036583.1| - 0.14 12.2 1.8 0.3 11.1 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|313126313|ref|YP_004036583.1| - 0.19 11.5 0.1 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PP_kinase_C PF13090.1 gi|313126314|ref|YP_004036584.1| - 5.2e-154 512.0 0.0 1.6e-153 510.5 0.0 1.7 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|313126314|ref|YP_004036584.1| - 5.9e-64 215.3 4.4 9.3e-64 214.7 3.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|313126314|ref|YP_004036584.1| - 6.6e-37 125.9 0.1 3.1e-36 123.7 0.1 2.3 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|313126314|ref|YP_004036584.1| - 1.4e-09 37.7 0.0 0.00023 20.8 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain AdoMet_Synthase PF01941.14 gi|313126315|ref|YP_004036585.1| - 5.6e-179 594.7 6.5 6.4e-179 594.5 4.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Asp23 PF03780.8 gi|313126315|ref|YP_004036585.1| - 1 9.6 5.5 7.7 6.8 0.5 3.3 2 1 0 2 2 2 0 Asp23 family CYTH PF01928.16 gi|313126316|ref|YP_004036586.1| - 3.9e-44 150.5 1.8 4.4e-44 150.3 1.2 1.0 1 0 0 1 1 1 1 CYTH domain Peptidase_M6 PF05547.6 gi|313126316|ref|YP_004036586.1| - 0.0039 15.2 0.1 0.18 9.7 0.0 2.0 1 1 0 2 2 2 2 Immune inhibitor A peptidase M6 COX2 PF00116.15 gi|313126318|ref|YP_004036588.1| - 2.3e-21 75.8 0.1 7.6e-21 74.1 0.0 1.8 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|313126318|ref|YP_004036588.1| - 0.0002 21.1 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain CopD PF05425.8 gi|313126318|ref|YP_004036588.1| - 0.085 13.0 2.6 0.16 12.2 1.8 1.4 1 0 0 1 1 1 0 Copper resistance protein D Pox_A14 PF05767.7 gi|313126318|ref|YP_004036588.1| - 2 8.4 5.7 8.2 6.4 0.2 2.7 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 COX1 PF00115.15 gi|313126319|ref|YP_004036589.1| - 2.2e-140 468.2 67.6 2.2e-140 468.2 46.9 3.2 2 1 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|313126319|ref|YP_004036589.1| - 2.4e-20 73.0 15.5 2.4e-20 73.0 10.8 3.6 3 1 0 3 3 3 1 Cytochrome c oxidase subunit III DUF2583 PF10762.4 gi|313126319|ref|YP_004036589.1| - 0.59 10.2 7.2 1.4 9.1 2.6 3.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) COX4_pro PF03626.9 gi|313126320|ref|YP_004036590.1| - 1.6e-11 44.1 11.1 1.9e-11 43.9 7.7 1.0 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF4392 PF14336.1 gi|313126320|ref|YP_004036590.1| - 0.13 11.0 0.5 0.16 10.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) DUF4149 PF13664.1 gi|313126320|ref|YP_004036590.1| - 0.48 10.5 5.9 0.63 10.1 4.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) DUF983 PF06170.7 gi|313126320|ref|YP_004036590.1| - 0.65 10.1 5.4 0.52 10.4 2.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF983) HlyIII PF03006.15 gi|313126320|ref|YP_004036590.1| - 1.1 8.6 7.9 1.4 8.2 5.5 1.1 1 0 0 1 1 1 0 Haemolysin-III related CTV_P6 PF06706.6 gi|313126320|ref|YP_004036590.1| - 2.7 7.5 5.3 8 6.0 0.1 2.4 2 1 0 2 2 2 0 Citrus tristeza virus 6-kDa protein DUF4131 PF13567.1 gi|313126320|ref|YP_004036590.1| - 3 7.2 7.6 2.7 7.3 4.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF485 PF04341.7 gi|313126321|ref|YP_004036591.1| - 0.12 12.0 0.8 0.14 11.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Acetyltransf_1 PF00583.19 gi|313126322|ref|YP_004036592.1| - 1.2e-16 60.4 0.0 2.5e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313126322|ref|YP_004036592.1| - 1.2e-07 31.7 0.0 2.2e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313126322|ref|YP_004036592.1| - 3.5e-07 29.8 0.0 6.9e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|313126322|ref|YP_004036592.1| - 4.2e-07 29.9 0.0 7e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313126322|ref|YP_004036592.1| - 3.6e-06 27.1 0.0 4.4e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313126322|ref|YP_004036592.1| - 6.2e-06 26.3 0.0 8.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313126322|ref|YP_004036592.1| - 3e-05 23.8 0.0 6.8e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|313126322|ref|YP_004036592.1| - 0.0047 16.8 0.0 0.0072 16.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313126322|ref|YP_004036592.1| - 0.0063 16.3 0.0 0.015 15.1 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FGase PF05013.7 gi|313126322|ref|YP_004036592.1| - 0.084 12.7 0.3 0.22 11.3 0.1 1.8 2 0 0 2 2 2 0 N-formylglutamate amidohydrolase DUF308 PF03729.8 gi|313126323|ref|YP_004036593.1| - 0.015 15.2 2.0 0.017 15.1 1.4 1.1 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) Oxidored_q3 PF00499.15 gi|313126323|ref|YP_004036593.1| - 0.15 11.8 1.3 0.17 11.6 0.9 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF202 PF02656.10 gi|313126323|ref|YP_004036593.1| - 3.2 8.0 4.8 5 7.4 3.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) zf-Di19 PF05605.7 gi|313126324|ref|YP_004036594.1| - 0.004 17.2 0.0 0.0069 16.4 0.0 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.4 gi|313126324|ref|YP_004036594.1| - 0.0062 16.3 0.1 0.009 15.8 0.1 1.2 1 0 0 1 1 1 1 Zinc-finger domain zf-RING_3 PF14369.1 gi|313126324|ref|YP_004036594.1| - 0.02 14.9 0.4 0.035 14.1 0.3 1.4 1 0 0 1 1 1 0 zinc-finger zf-C2HC_2 PF13913.1 gi|313126324|ref|YP_004036594.1| - 0.052 13.2 0.4 0.082 12.6 0.3 1.2 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|313126324|ref|YP_004036594.1| - 0.067 13.5 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type PyrI_C PF02748.10 gi|313126324|ref|YP_004036594.1| - 0.12 11.8 0.1 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2_4 PF13894.1 gi|313126324|ref|YP_004036594.1| - 0.2 12.0 0.8 0.28 11.6 0.2 1.5 2 0 0 2 2 2 0 C2H2-type zinc finger Sulf_coat_C PF12193.3 gi|313126325|ref|YP_004036595.1| - 0.0041 16.8 0.1 1.4 8.7 0.0 3.2 3 0 0 3 3 3 2 Sulfolobus virus coat protein C terminal DUF1144 PF06610.8 gi|313126326|ref|YP_004036596.1| - 0.07 12.8 2.1 0.097 12.4 1.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1144) FKBP_C PF00254.23 gi|313126327|ref|YP_004036597.1| - 2.2e-08 33.9 0.5 5e-08 32.8 0.1 1.8 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase KaiC PF06745.8 gi|313126329|ref|YP_004036599.1| - 8.7e-07 28.2 0.0 0.00043 19.4 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.6 gi|313126329|ref|YP_004036599.1| - 0.0029 16.4 0.1 0.0043 15.9 0.1 1.3 1 0 0 1 1 1 1 PAXNEB protein Trigger_N PF05697.8 gi|313126329|ref|YP_004036599.1| - 0.017 14.9 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) CbiA PF01656.18 gi|313126330|ref|YP_004036600.1| - 9.1e-20 70.8 0.0 1.1e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|313126330|ref|YP_004036600.1| - 0.00034 20.2 3.5 0.031 13.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain ParA PF10609.4 gi|313126330|ref|YP_004036600.1| - 0.0006 19.6 0.1 0.00099 18.9 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like MipZ PF09140.6 gi|313126330|ref|YP_004036600.1| - 0.0073 15.4 0.2 0.013 14.5 0.1 1.4 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|313126330|ref|YP_004036600.1| - 0.011 15.6 0.0 0.13 12.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|313126330|ref|YP_004036600.1| - 0.063 12.3 0.1 0.097 11.7 0.0 1.3 1 1 0 1 1 1 0 Zeta toxin ArsA_ATPase PF02374.10 gi|313126330|ref|YP_004036600.1| - 0.63 9.0 2.1 0.93 8.4 1.4 1.1 1 0 0 1 1 1 0 Anion-transporting ATPase DUF964 PF06133.6 gi|313126331|ref|YP_004036601.1| - 2e-26 92.0 10.1 2.3e-26 91.8 7.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF964) FTA4 PF13093.1 gi|313126331|ref|YP_004036601.1| - 0.024 14.1 3.6 0.027 13.9 2.5 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF3080 PF11279.3 gi|313126331|ref|YP_004036601.1| - 0.024 13.7 2.6 0.03 13.4 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) SH3BP5 PF05276.9 gi|313126331|ref|YP_004036601.1| - 0.038 13.2 5.1 0.093 12.0 3.6 1.6 1 1 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) tRNA-synt_His PF13393.1 gi|313126331|ref|YP_004036601.1| - 0.078 12.0 2.9 0.12 11.3 2.0 1.3 1 1 0 1 1 1 0 Histidyl-tRNA synthetase WXG100 PF06013.7 gi|313126331|ref|YP_004036601.1| - 0.21 11.6 4.8 0.48 10.4 3.3 1.6 1 0 0 1 1 1 0 Proteins of 100 residues with WXG HHH_8 PF14716.1 gi|313126331|ref|YP_004036601.1| - 0.26 11.4 2.5 2.3 8.4 0.3 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain Nsp1_C PF05064.8 gi|313126331|ref|YP_004036601.1| - 0.39 10.3 7.4 1.4 8.6 5.1 1.8 1 1 1 2 2 2 0 Nsp1-like C-terminal region Mu-like_Pro PF10123.4 gi|313126331|ref|YP_004036601.1| - 0.41 10.0 6.1 0.51 9.7 4.2 1.0 1 0 0 1 1 1 0 Mu-like prophage I protein Flagellin_N PF00669.15 gi|313126331|ref|YP_004036601.1| - 0.51 10.1 3.1 1 9.1 2.2 1.5 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region Syntaxin-6_N PF09177.6 gi|313126331|ref|YP_004036601.1| - 0.75 10.2 5.4 5 7.5 2.7 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal TBPIP PF07106.8 gi|313126331|ref|YP_004036601.1| - 1.1 8.7 7.0 1.3 8.5 4.2 1.5 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Occludin_ELL PF07303.8 gi|313126331|ref|YP_004036601.1| - 1.3 9.8 4.4 12 6.6 2.5 2.2 1 1 1 2 2 2 0 Occludin homology domain Mst1_SARAH PF11629.3 gi|313126331|ref|YP_004036601.1| - 1.8 8.4 7.1 25 4.8 0.0 3.3 2 1 1 3 3 3 0 C terminal SARAH domain of Mst1 ATP-synt_DE PF00401.15 gi|313126331|ref|YP_004036601.1| - 2.7 7.9 10.9 1.1 9.1 1.3 2.5 2 1 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PG_binding_1 PF01471.13 gi|313126331|ref|YP_004036601.1| - 3.5 7.6 5.3 46 4.1 0.1 2.7 2 1 1 3 3 3 0 Putative peptidoglycan binding domain OppC_N PF12911.2 gi|313126332|ref|YP_004036602.1| - 0.029 13.7 2.5 0.042 13.2 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Pneumo_att_G PF05539.6 gi|313126332|ref|YP_004036602.1| - 0.25 10.6 7.6 0.5 9.6 5.3 1.4 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G Y1_Tnp PF01797.11 gi|313126333|ref|YP_004036603.1| - 2.9e-31 107.8 0.1 6.3e-29 100.2 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like OrfB_IS605 PF01385.14 gi|313126334|ref|YP_004036604.1| - 8.8e-61 205.1 0.0 1.5e-60 204.4 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313126334|ref|YP_004036604.1| - 2.3e-16 59.2 0.7 4.4e-16 58.2 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.14 gi|313126334|ref|YP_004036604.1| - 0.12 12.0 0.5 0.22 11.1 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Diphthamide_syn PF01866.12 gi|313126335|ref|YP_004036605.1| - 7.6e-95 317.6 0.0 8.8e-95 317.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF3529 PF12046.3 gi|313126335|ref|YP_004036605.1| - 0.024 13.6 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) Hydrolase_4 PF12146.3 gi|313126335|ref|YP_004036605.1| - 0.026 14.3 0.0 2 8.3 0.0 2.4 2 0 0 2 2 2 0 Putative lysophospholipase Lysine_decarbox PF03641.9 gi|313126336|ref|YP_004036606.1| - 5.2e-06 26.3 0.2 1.1e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|313126336|ref|YP_004036606.1| - 3.7e-05 22.7 6.0 0.0003 19.7 3.7 1.9 1 1 1 2 2 2 1 DNA recombination-mediator protein A AA_kinase PF00696.23 gi|313126336|ref|YP_004036606.1| - 0.32 10.4 2.8 1.4 8.4 0.6 1.9 1 1 0 1 1 1 0 Amino acid kinase family Lactamase_B_2 PF12706.2 gi|313126337|ref|YP_004036607.1| - 3.1e-16 59.5 1.4 4e-16 59.1 1.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313126337|ref|YP_004036607.1| - 4.2e-13 49.3 0.2 6.1e-13 48.7 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|313126337|ref|YP_004036607.1| - 0.00078 19.1 14.9 0.0075 15.9 10.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily IncA PF04156.9 gi|313126338|ref|YP_004036608.1| - 1.6e-09 37.6 13.7 5.6e-06 26.0 4.5 2.7 1 1 1 2 2 2 2 IncA protein CENP-F_leu_zip PF10473.4 gi|313126338|ref|YP_004036608.1| - 2.3e-06 27.5 10.7 0.00066 19.5 0.6 3.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.7 gi|313126338|ref|YP_004036608.1| - 8.9e-06 25.5 9.2 0.00044 20.0 1.4 3.5 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) APG6 PF04111.7 gi|313126338|ref|YP_004036608.1| - 1.4e-05 24.3 6.7 0.015 14.3 0.7 2.3 1 1 1 2 2 2 2 Autophagy protein Apg6 TBPIP PF07106.8 gi|313126338|ref|YP_004036608.1| - 1.4e-05 24.6 2.9 0.037 13.5 0.1 2.7 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Reo_sigmaC PF04582.7 gi|313126338|ref|YP_004036608.1| - 1.6e-05 24.3 9.2 1.6e-05 24.2 4.7 2.0 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Filament PF00038.16 gi|313126338|ref|YP_004036608.1| - 2.6e-05 23.8 12.9 0.0052 16.2 5.8 3.2 1 1 2 3 3 3 2 Intermediate filament protein AAA_13 PF13166.1 gi|313126338|ref|YP_004036608.1| - 3.8e-05 22.3 1.8 7.3e-05 21.4 1.2 1.4 1 0 0 1 1 1 1 AAA domain DUF4201 PF13870.1 gi|313126338|ref|YP_004036608.1| - 8.3e-05 22.0 0.2 0.072 12.5 0.1 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) Mnd1 PF03962.10 gi|313126338|ref|YP_004036608.1| - 0.00011 21.9 4.0 0.0017 18.0 0.8 2.6 1 1 1 2 2 2 1 Mnd1 family Seryl_tRNA_N PF02403.17 gi|313126338|ref|YP_004036608.1| - 0.00012 22.0 6.7 0.027 14.4 0.0 3.6 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|313126338|ref|YP_004036608.1| - 0.00018 20.3 7.0 0.062 11.9 2.7 2.3 1 1 1 2 2 2 2 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|313126338|ref|YP_004036608.1| - 0.00024 20.9 7.6 0.1 12.4 0.5 3.4 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus Tropomyosin_1 PF12718.2 gi|313126338|ref|YP_004036608.1| - 0.00035 20.4 21.5 0.002 18.0 7.5 3.0 1 1 2 3 3 3 2 Tropomyosin like IFT57 PF10498.4 gi|313126338|ref|YP_004036608.1| - 0.00036 19.4 1.1 0.00036 19.4 0.7 3.1 3 1 1 4 4 3 1 Intra-flagellar transport protein 57 BLOC1_2 PF10046.4 gi|313126338|ref|YP_004036608.1| - 0.00044 20.3 9.1 0.67 10.1 0.5 4.1 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|313126338|ref|YP_004036608.1| - 0.00049 19.8 6.2 0.19 11.4 1.7 3.4 1 1 1 2 2 2 2 Laminin Domain II WEMBL PF05701.6 gi|313126338|ref|YP_004036608.1| - 0.00056 18.5 9.2 0.00056 18.5 6.4 1.6 2 0 0 2 2 1 1 Weak chloroplast movement under blue light Mod_r PF07200.8 gi|313126338|ref|YP_004036608.1| - 0.00097 19.0 3.9 0.037 13.9 1.9 2.5 1 1 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein GAS PF13851.1 gi|313126338|ref|YP_004036608.1| - 0.0012 18.0 2.5 0.092 11.9 0.6 2.4 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding EzrA PF06160.7 gi|313126338|ref|YP_004036608.1| - 0.0016 16.7 2.2 0.0016 16.7 1.5 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin PF00261.15 gi|313126338|ref|YP_004036608.1| - 0.0028 16.7 16.2 0.0071 15.4 11.3 1.7 1 0 0 1 1 1 1 Tropomyosin Apolipoprotein PF01442.13 gi|313126338|ref|YP_004036608.1| - 0.005 16.3 12.5 0.017 14.6 8.7 1.9 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Tup_N PF08581.5 gi|313126338|ref|YP_004036608.1| - 0.0055 16.8 6.5 0.23 11.6 0.1 3.3 4 0 0 4 4 2 1 Tup N-terminal Atg14 PF10186.4 gi|313126338|ref|YP_004036608.1| - 0.006 15.5 0.2 0.29 10.0 0.0 2.1 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 FliJ PF02050.11 gi|313126338|ref|YP_004036608.1| - 0.0064 16.5 0.4 4.1 7.4 0.0 2.9 2 1 1 3 3 2 0 Flagellar FliJ protein Lebercilin PF15619.1 gi|313126338|ref|YP_004036608.1| - 0.0067 15.8 1.0 0.035 13.5 0.3 2.1 2 0 0 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease COG2 PF06148.6 gi|313126338|ref|YP_004036608.1| - 0.01 15.6 9.7 2.3 8.0 0.2 4.4 2 1 1 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF972 PF06156.8 gi|313126338|ref|YP_004036608.1| - 0.012 15.9 2.4 0.59 10.5 0.2 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) NPV_P10 PF05531.7 gi|313126338|ref|YP_004036608.1| - 0.013 15.6 18.8 5.7 7.2 1.7 4.9 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein CENP-Q PF13094.1 gi|313126338|ref|YP_004036608.1| - 0.014 15.4 8.9 1.2 9.0 6.2 2.6 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit ATG16 PF08614.6 gi|313126338|ref|YP_004036608.1| - 0.014 15.1 16.0 0.2 11.4 0.1 3.6 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Spectrin PF00435.16 gi|313126338|ref|YP_004036608.1| - 0.017 15.4 11.8 0.71 10.1 0.2 3.5 1 1 1 3 3 3 0 Spectrin repeat zf-C4H2 PF10146.4 gi|313126338|ref|YP_004036608.1| - 0.024 14.6 9.5 0.028 14.4 0.7 2.7 2 1 1 3 3 2 0 Zinc finger-containing protein TMF_DNA_bd PF12329.3 gi|313126338|ref|YP_004036608.1| - 0.042 13.6 8.3 9 6.1 0.0 4.0 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding RmuC PF02646.11 gi|313126338|ref|YP_004036608.1| - 0.065 12.0 3.3 3.2 6.5 0.4 2.8 1 1 2 3 3 3 0 RmuC family THOC7 PF05615.8 gi|313126338|ref|YP_004036608.1| - 0.079 13.2 2.0 1.6 8.9 0.0 2.8 1 1 0 2 2 2 0 Tho complex subunit 7 TPR_MLP1_2 PF07926.7 gi|313126338|ref|YP_004036608.1| - 0.079 12.7 9.7 0.028 14.1 1.6 3.1 2 1 0 2 2 1 0 TPR/MLP1/MLP2-like protein PhaC_N PF07167.8 gi|313126338|ref|YP_004036608.1| - 0.088 12.2 0.4 1.4 8.3 0.0 2.7 2 1 0 3 3 3 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Fib_alpha PF08702.5 gi|313126338|ref|YP_004036608.1| - 0.11 12.6 0.4 0.83 9.7 0.1 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ADIP PF11559.3 gi|313126338|ref|YP_004036608.1| - 0.12 12.2 2.8 1.4 8.7 0.1 3.1 2 1 3 5 5 4 0 Afadin- and alpha -actinin-Binding Macoilin PF09726.4 gi|313126338|ref|YP_004036608.1| - 0.12 10.6 3.3 0.21 9.8 2.3 1.3 1 0 0 1 1 1 0 Transmembrane protein DUF3584 PF12128.3 gi|313126338|ref|YP_004036608.1| - 0.12 9.6 14.5 1.4 6.1 10.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) XhlA PF10779.4 gi|313126338|ref|YP_004036608.1| - 0.13 12.1 12.3 1.2 9.1 0.1 3.6 2 1 1 3 3 3 0 Haemolysin XhlA Myosin_tail_1 PF01576.14 gi|313126338|ref|YP_004036608.1| - 0.14 9.8 21.6 0.43 8.2 13.6 2.1 1 1 1 2 2 2 0 Myosin tail Prefoldin PF02996.12 gi|313126338|ref|YP_004036608.1| - 0.16 11.6 8.9 23 4.6 0.2 4.7 2 1 2 5 5 5 0 Prefoldin subunit FlaC_arch PF05377.6 gi|313126338|ref|YP_004036608.1| - 0.18 11.7 8.7 16 5.4 0.0 5.0 1 1 4 5 5 5 0 Flagella accessory protein C (FlaC) Uds1 PF15456.1 gi|313126338|ref|YP_004036608.1| - 0.19 11.7 5.0 5.8 6.9 1.7 3.4 2 1 0 2 2 2 0 Up-regulated During Septation DUF2408 PF10303.4 gi|313126338|ref|YP_004036608.1| - 0.22 11.6 4.5 1.8 8.7 0.0 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) FH2 PF02181.18 gi|313126338|ref|YP_004036608.1| - 0.27 10.0 4.0 1.1 8.0 0.9 2.5 1 1 2 3 3 3 0 Formin Homology 2 Domain MscS_porin PF12795.2 gi|313126338|ref|YP_004036608.1| - 0.27 10.5 8.4 0.057 12.7 1.0 2.9 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain Prefoldin_2 PF01920.15 gi|313126338|ref|YP_004036608.1| - 0.32 10.7 12.4 3.3 7.5 0.3 4.4 2 1 0 3 3 3 0 Prefoldin subunit TMF_TATA_bd PF12325.3 gi|313126338|ref|YP_004036608.1| - 0.33 10.6 15.4 1.6 8.4 4.1 3.6 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding Nsp1_C PF05064.8 gi|313126338|ref|YP_004036608.1| - 0.33 10.5 6.5 0.99 9.0 1.0 2.3 1 1 1 2 2 2 0 Nsp1-like C-terminal region HAUS5 PF14817.1 gi|313126338|ref|YP_004036608.1| - 0.41 9.1 4.8 0.33 9.4 2.0 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 5 Rootletin PF15035.1 gi|313126338|ref|YP_004036608.1| - 0.44 10.5 8.2 0.28 11.1 2.5 2.5 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion CorA PF01544.13 gi|313126338|ref|YP_004036608.1| - 0.46 9.4 15.6 1 8.3 5.6 2.6 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein DUF4559 PF15112.1 gi|313126338|ref|YP_004036608.1| - 0.55 9.3 8.2 0.22 10.6 2.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) Fzo_mitofusin PF04799.8 gi|313126338|ref|YP_004036608.1| - 0.55 9.5 4.7 1.8 7.9 0.1 3.0 1 1 2 3 3 3 0 fzo-like conserved region AF0941-like PF14591.1 gi|313126338|ref|YP_004036608.1| - 0.56 10.2 6.9 0.66 10.0 2.3 2.6 1 1 1 2 2 2 0 AF0941-like DUF4618 PF15397.1 gi|313126338|ref|YP_004036608.1| - 0.66 9.2 3.3 2.7 7.2 0.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF948 PF06103.6 gi|313126338|ref|YP_004036608.1| - 0.76 9.6 6.4 1.7 8.5 1.2 3.2 1 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.3 gi|313126338|ref|YP_004036608.1| - 0.86 8.8 8.2 8.2 5.6 2.0 3.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) MAD PF05557.8 gi|313126338|ref|YP_004036608.1| - 0.9 7.5 10.0 1.5 6.7 6.6 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein Bacillus_HBL PF05791.6 gi|313126338|ref|YP_004036608.1| - 1.4 8.2 5.9 3.7 6.8 0.3 3.0 1 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) ALIX_LYPXL_bnd PF13949.1 gi|313126338|ref|YP_004036608.1| - 1.5 7.6 11.7 8.3 5.2 8.1 2.1 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV Vps53_N PF04100.7 gi|313126338|ref|YP_004036608.1| - 2.1 7.0 7.1 0.25 10.0 2.0 1.6 2 0 0 2 2 2 0 Vps53-like, N-terminal DASH_Dam1 PF08653.5 gi|313126338|ref|YP_004036608.1| - 6.8 6.5 6.8 33 4.3 0.0 4.2 3 1 0 4 4 3 0 DASH complex subunit Dam1 Med9 PF07544.8 gi|313126338|ref|YP_004036608.1| - 9.2 6.0 8.3 8.2 6.2 0.0 3.9 3 1 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 tRNA-synt_1b PF00579.20 gi|313126341|ref|YP_004036611.1| - 1.1e-25 90.3 0.0 6.8e-25 87.7 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) TAT_signal PF10518.4 gi|313126342|ref|YP_004036612.1| - 0.93 9.6 5.7 2.2 8.4 3.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.13 gi|313126343|ref|YP_004036613.1| - 1.3e-16 60.4 0.1 2.2e-16 59.6 0.1 1.4 1 1 0 1 1 1 1 Periplasmic binding protein CopD PF05425.8 gi|313126344|ref|YP_004036614.1| - 5.2e-06 26.6 14.5 5.2e-06 26.6 10.0 1.8 2 0 0 2 2 2 1 Copper resistance protein D HTH_20 PF12840.2 gi|313126345|ref|YP_004036615.1| - 9.6e-09 34.9 0.1 1.3e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313126345|ref|YP_004036615.1| - 8.8e-05 22.0 0.2 0.00013 21.5 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.10 gi|313126345|ref|YP_004036615.1| - 0.0001 22.0 0.0 0.00017 21.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|313126345|ref|YP_004036615.1| - 0.00027 20.5 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313126345|ref|YP_004036615.1| - 0.00043 19.8 0.0 0.00068 19.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|313126345|ref|YP_004036615.1| - 0.0057 16.2 0.0 0.0083 15.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313126345|ref|YP_004036615.1| - 0.011 15.3 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|313126345|ref|YP_004036615.1| - 0.028 14.0 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain PadR PF03551.9 gi|313126345|ref|YP_004036615.1| - 0.028 14.1 0.0 0.056 13.2 0.0 1.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family FUR PF01475.14 gi|313126345|ref|YP_004036615.1| - 0.062 13.2 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.1 gi|313126345|ref|YP_004036615.1| - 0.084 12.2 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF742 PF05331.6 gi|313126345|ref|YP_004036615.1| - 0.1 12.1 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) MerC PF03203.9 gi|313126346|ref|YP_004036616.1| - 0.053 13.8 8.1 0.092 13.1 5.6 1.4 1 1 0 1 1 1 0 MerC mercury resistance protein DUF2177 PF09945.4 gi|313126346|ref|YP_004036616.1| - 0.068 13.1 1.9 0.1 12.5 1.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2177) Phlebovirus_G2 PF07245.6 gi|313126346|ref|YP_004036616.1| - 0.38 8.9 2.7 0.35 9.0 1.8 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G2 TspO_MBR PF03073.10 gi|313126346|ref|YP_004036616.1| - 1.1 8.8 4.9 1.2 8.6 3.4 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF3007 PF11460.3 gi|313126346|ref|YP_004036616.1| - 3.3 7.8 9.6 4.2 7.5 3.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) YtpI PF14007.1 gi|313126346|ref|YP_004036616.1| - 6 6.8 14.3 2 8.3 1.0 2.4 1 1 1 2 2 2 0 YtpI-like protein DUF202 PF02656.10 gi|313126346|ref|YP_004036616.1| - 6.5 7.0 12.9 1.7 8.9 4.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF202) MMPL PF03176.10 gi|313126347|ref|YP_004036617.1| - 1.4e-31 109.4 39.6 1.8e-17 63.0 9.6 3.1 3 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|313126347|ref|YP_004036617.1| - 3.4e-12 46.0 6.6 9.3e-08 31.6 0.2 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|313126347|ref|YP_004036617.1| - 9.8e-12 43.6 10.6 1.1e-08 33.5 1.9 2.1 2 0 0 2 2 2 2 Patched family Phage_integrase PF00589.17 gi|313126348|ref|YP_004036618.1| - 1.3e-17 63.9 0.0 2.3e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|313126348|ref|YP_004036618.1| - 1.8e-07 31.3 0.5 2.9e-06 27.5 0.7 2.2 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|313126348|ref|YP_004036618.1| - 2.4e-07 30.7 0.8 1.7e-06 28.1 0.4 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain RHH_1 PF01402.16 gi|313126349|ref|YP_004036619.1| - 0.0089 15.8 0.3 0.097 12.5 0.0 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF159 PF02586.9 gi|313126350|ref|YP_004036620.1| - 9.4e-63 211.4 0.0 1.1e-62 211.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 RNase_H_2 PF13482.1 gi|313126351|ref|YP_004036621.1| - 2e-36 125.3 0.0 2.5e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|313126351|ref|YP_004036621.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 3'-5' exonuclease HHH_5 PF14520.1 gi|313126351|ref|YP_004036621.1| - 0.092 12.9 0.0 0.83 9.8 0.0 2.4 3 0 0 3 3 3 0 Helix-hairpin-helix domain Glycos_transf_2 PF00535.21 gi|313126353|ref|YP_004036623.1| - 5.4e-18 65.2 0.0 6.7e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313126353|ref|YP_004036623.1| - 3.4e-07 30.3 0.3 4.1e-07 30.0 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF3179 PF11376.3 gi|313126354|ref|YP_004036624.1| - 3.1e-81 272.4 0.0 4.4e-81 271.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Nudix_N_2 PF14803.1 gi|313126354|ref|YP_004036624.1| - 0.0064 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Nudix N-terminal Bactofilin PF04519.8 gi|313126356|ref|YP_004036626.1| - 1.2e-11 44.4 6.2 5.3e-09 36.0 0.5 3.2 2 1 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|313126356|ref|YP_004036626.1| - 6.8e-05 22.1 17.1 0.22 11.0 0.1 6.0 5 2 2 7 7 7 4 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|313126356|ref|YP_004036626.1| - 0.0063 16.1 0.2 0.02 14.5 0.1 1.9 3 0 0 3 3 3 1 Protein of unknown function (DUF3494) Hexapep_2 PF14602.1 gi|313126356|ref|YP_004036626.1| - 0.016 14.7 9.7 0.065 12.8 0.0 3.8 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF4098 PF13345.1 gi|313126356|ref|YP_004036626.1| - 4.8 7.1 8.0 5.8 6.9 2.3 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4098) DUF4349 PF14257.1 gi|313126357|ref|YP_004036627.1| - 3.2e-72 242.9 6.1 3.8e-72 242.6 4.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) CENP-F_leu_zip PF10473.4 gi|313126357|ref|YP_004036627.1| - 0.00045 20.0 7.5 0.0077 16.1 5.3 2.4 2 1 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MscS_porin PF12795.2 gi|313126357|ref|YP_004036627.1| - 0.0016 17.7 5.4 0.0024 17.2 3.7 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|313126357|ref|YP_004036627.1| - 0.004 16.6 2.3 0.071 12.5 1.6 2.1 1 1 1 2 2 2 1 Intermediate filament protein APG6 PF04111.7 gi|313126357|ref|YP_004036627.1| - 0.0049 15.9 1.7 0.0065 15.5 1.2 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 COG2 PF06148.6 gi|313126357|ref|YP_004036627.1| - 0.012 15.4 2.6 0.022 14.6 1.8 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Seryl_tRNA_N PF02403.17 gi|313126357|ref|YP_004036627.1| - 0.014 15.4 2.1 0.051 13.6 1.6 1.8 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|313126357|ref|YP_004036627.1| - 0.014 14.0 4.6 0.021 13.4 3.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2408 PF10303.4 gi|313126357|ref|YP_004036627.1| - 0.015 15.4 0.9 0.077 13.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) MAD PF05557.8 gi|313126357|ref|YP_004036627.1| - 0.043 11.9 4.0 0.063 11.3 2.8 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF4017 PF13209.1 gi|313126357|ref|YP_004036627.1| - 0.066 13.0 0.4 0.14 11.9 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4017) DUF4201 PF13870.1 gi|313126357|ref|YP_004036627.1| - 0.072 12.5 3.9 0.16 11.4 2.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DUF342 PF03961.8 gi|313126357|ref|YP_004036627.1| - 0.074 11.4 0.3 0.098 11.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF2730 PF10805.3 gi|313126357|ref|YP_004036627.1| - 0.11 12.2 2.7 0.84 9.4 1.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Fmp27_WPPW PF10359.4 gi|313126357|ref|YP_004036627.1| - 0.11 10.8 1.7 0.16 10.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.10 gi|313126357|ref|YP_004036627.1| - 0.13 11.7 8.6 0.86 9.1 1.0 2.5 1 1 1 2 2 2 0 Septum formation initiator Atg14 PF10186.4 gi|313126357|ref|YP_004036627.1| - 0.15 11.0 1.0 0.2 10.5 0.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_2 PF07716.10 gi|313126357|ref|YP_004036627.1| - 0.18 11.6 5.4 4.3 7.2 0.1 2.3 2 0 0 2 2 2 0 Basic region leucine zipper DUF1664 PF07889.7 gi|313126357|ref|YP_004036627.1| - 0.19 11.5 1.8 0.47 10.2 1.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Viral_P18 PF04521.8 gi|313126357|ref|YP_004036627.1| - 0.22 10.9 4.9 1.3 8.4 0.9 2.2 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Cortex-I_coil PF09304.5 gi|313126357|ref|YP_004036627.1| - 0.25 11.4 4.7 1.3 9.1 3.5 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil Prefoldin_2 PF01920.15 gi|313126357|ref|YP_004036627.1| - 0.27 11.0 6.6 3 7.6 0.2 2.7 1 1 1 2 2 2 0 Prefoldin subunit Snapin_Pallidin PF14712.1 gi|313126357|ref|YP_004036627.1| - 0.28 11.5 2.8 0.59 10.4 1.9 1.5 1 0 0 1 1 1 0 Snapin/Pallidin V_ATPase_I PF01496.14 gi|313126357|ref|YP_004036627.1| - 0.37 8.6 1.6 0.62 7.8 1.1 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family PilJ PF13675.1 gi|313126357|ref|YP_004036627.1| - 0.39 11.0 4.0 0.3 11.4 1.4 1.9 2 0 0 2 2 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term IFT20 PF14931.1 gi|313126357|ref|YP_004036627.1| - 0.42 10.5 5.6 5.4 6.9 0.7 2.3 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 NPV_P10 PF05531.7 gi|313126357|ref|YP_004036627.1| - 0.47 10.7 5.7 3.1 8.1 2.3 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein CorA PF01544.13 gi|313126357|ref|YP_004036627.1| - 0.53 9.2 3.5 0.91 8.5 2.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MLTD_N PF06474.7 gi|313126357|ref|YP_004036627.1| - 0.54 10.4 2.8 1.6 8.9 2.0 1.9 1 0 0 1 1 1 0 MltD lipid attachment motif Laminin_II PF06009.7 gi|313126357|ref|YP_004036627.1| - 0.6 9.8 5.4 1.2 8.9 2.9 2.0 1 1 1 2 2 2 0 Laminin Domain II Spc24 PF08286.6 gi|313126357|ref|YP_004036627.1| - 0.66 9.6 7.1 4.4 7.0 0.2 2.6 2 1 1 3 3 2 0 Spc24 subunit of Ndc80 HR1 PF02185.11 gi|313126357|ref|YP_004036627.1| - 0.68 9.7 4.7 2.4 7.9 1.1 2.2 1 1 1 2 2 2 0 Hr1 repeat DUF4140 PF13600.1 gi|313126357|ref|YP_004036627.1| - 1.2 9.5 10.2 42 4.6 7.1 2.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF3450 PF11932.3 gi|313126357|ref|YP_004036627.1| - 3.7 6.7 10.6 2.1 7.5 3.6 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) MerR-DNA-bind PF09278.6 gi|313126357|ref|YP_004036627.1| - 6.8 7.1 10.8 10 6.5 1.1 2.4 1 1 1 2 2 2 0 MerR, DNA binding MMR_HSR1_C PF08438.5 gi|313126358|ref|YP_004036628.1| - 6.7e-33 113.1 0.0 1e-32 112.5 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|313126358|ref|YP_004036628.1| - 5.9e-17 61.6 0.0 2.8e-16 59.5 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|313126358|ref|YP_004036628.1| - 6.3e-12 45.1 0.0 3.4e-11 42.8 0.0 2.1 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|313126358|ref|YP_004036628.1| - 3.8e-08 32.7 0.0 2.6e-07 30.0 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|313126358|ref|YP_004036628.1| - 0.088 12.6 0.0 8.6 6.1 0.0 2.5 3 0 0 3 3 3 0 Dynamin family Miro PF08477.8 gi|313126358|ref|YP_004036628.1| - 0.13 12.7 0.0 6.8 7.2 0.0 2.9 2 1 0 2 2 2 0 Miro-like protein HTH_20 PF12840.2 gi|313126359|ref|YP_004036629.1| - 0.079 12.7 0.0 0.28 10.9 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain YscJ_FliF PF01514.12 gi|313126359|ref|YP_004036629.1| - 0.092 11.8 0.0 0.092 11.8 0.0 1.1 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family Aminotran_1_2 PF00155.16 gi|313126360|ref|YP_004036630.1| - 7.5e-64 215.9 0.0 8.4e-64 215.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|313126360|ref|YP_004036630.1| - 5.8e-14 51.9 0.1 8.8e-14 51.3 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|313126360|ref|YP_004036630.1| - 3.7e-10 39.4 0.0 8.8e-10 38.1 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313126360|ref|YP_004036630.1| - 9.2e-08 30.7 0.0 1.2e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|313126360|ref|YP_004036630.1| - 1.7e-07 30.2 0.0 2.1e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|313126360|ref|YP_004036630.1| - 0.048 12.5 0.0 0.085 11.6 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III SLH PF00395.15 gi|313126361|ref|YP_004036631.1| - 0.011 15.4 0.1 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 S-layer homology domain ResIII PF04851.10 gi|313126362|ref|YP_004036632.1| - 5.2e-23 81.8 0.0 1e-21 77.6 0.0 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|313126362|ref|YP_004036632.1| - 1.5e-14 53.6 0.0 4.5e-14 52.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|313126362|ref|YP_004036632.1| - 1.8e-10 40.6 0.0 6e-10 38.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|313126362|ref|YP_004036632.1| - 9.2e-07 27.9 0.0 6.7e-06 25.1 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain Helicase_C_2 PF13307.1 gi|313126362|ref|YP_004036632.1| - 0.0026 17.7 0.0 3.2 7.6 0.0 3.1 3 0 0 3 3 3 2 Helicase C-terminal domain AAA_19 PF13245.1 gi|313126362|ref|YP_004036632.1| - 0.012 15.3 0.3 0.075 12.7 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain SecA_DEAD PF07517.9 gi|313126362|ref|YP_004036632.1| - 0.046 12.9 0.0 0.074 12.3 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain CARDB PF07705.6 gi|313126363|ref|YP_004036633.1| - 0.024 14.6 0.4 0.029 14.3 0.3 1.1 1 0 0 1 1 1 0 CARDB DUF790 PF05626.6 gi|313126364|ref|YP_004036634.1| - 1.6e-92 310.0 0.0 3.1e-92 309.0 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF790) Nol1_Nop2_Fmu_2 PF13636.1 gi|313126365|ref|YP_004036635.1| - 1.6e-16 60.2 0.0 2.1e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|313126366|ref|YP_004036636.1| - 8.6e-50 169.6 0.0 9.9e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|313126366|ref|YP_004036636.1| - 4.7e-05 23.0 0.0 7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313126366|ref|YP_004036636.1| - 6.8e-05 23.4 0.0 0.00017 22.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313126366|ref|YP_004036636.1| - 0.00072 19.5 0.1 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PAC2 PF09754.4 gi|313126367|ref|YP_004036637.1| - 7.6e-41 140.3 0.0 8.8e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family GrpE PF01025.14 gi|313126368|ref|YP_004036638.1| - 5.7e-37 126.8 23.4 6.2e-35 120.1 16.2 2.1 1 1 0 1 1 1 1 GrpE ATG16 PF08614.6 gi|313126368|ref|YP_004036638.1| - 0.0028 17.5 13.0 0.004 17.0 9.0 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Fib_alpha PF08702.5 gi|313126368|ref|YP_004036638.1| - 0.0059 16.7 2.5 0.011 15.8 1.8 1.4 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family ERM PF00769.14 gi|313126368|ref|YP_004036638.1| - 0.0084 15.6 17.8 0.011 15.2 12.3 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Atg14 PF10186.4 gi|313126368|ref|YP_004036638.1| - 0.013 14.5 8.4 0.017 14.1 5.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|313126368|ref|YP_004036638.1| - 0.034 14.5 4.4 0.14 12.5 3.0 2.1 1 0 0 1 1 1 0 SlyX Bacillus_HBL PF05791.6 gi|313126368|ref|YP_004036638.1| - 0.051 12.9 1.6 0.079 12.3 1.1 1.3 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) PilJ PF13675.1 gi|313126368|ref|YP_004036638.1| - 0.053 13.8 11.5 0.031 14.5 3.5 2.7 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF904 PF06005.7 gi|313126368|ref|YP_004036638.1| - 0.065 13.5 6.6 0.15 12.3 4.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Tho2 PF11262.3 gi|313126368|ref|YP_004036638.1| - 0.14 11.1 0.5 0.2 10.6 0.4 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 HrpB7 PF09486.5 gi|313126368|ref|YP_004036638.1| - 0.4 10.5 28.9 0.7 9.8 20.0 1.4 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Macoilin PF09726.4 gi|313126368|ref|YP_004036638.1| - 0.76 7.9 11.6 0.84 7.8 8.1 1.1 1 0 0 1 1 1 0 Transmembrane protein YlqD PF11068.3 gi|313126368|ref|YP_004036638.1| - 1 9.4 9.6 0.32 11.0 4.4 1.8 1 1 1 2 2 2 0 YlqD protein IFP_35_N PF07334.8 gi|313126368|ref|YP_004036638.1| - 1.1 9.3 7.9 1.9 8.5 0.3 2.4 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus IncA PF04156.9 gi|313126368|ref|YP_004036638.1| - 1.2 8.7 12.2 2 7.9 8.4 1.4 1 1 0 1 1 1 0 IncA protein DUF4407 PF14362.1 gi|313126368|ref|YP_004036638.1| - 2.1 7.2 24.7 2.9 6.7 17.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Hex_IIIa PF02455.11 gi|313126368|ref|YP_004036638.1| - 2.3 6.8 10.7 2.9 6.4 7.4 1.1 1 0 0 1 1 1 0 Hexon-associated protein (IIIa) HAUS6_N PF14661.1 gi|313126368|ref|YP_004036638.1| - 2.8 7.2 12.8 4.1 6.6 8.9 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus CENP-Q PF13094.1 gi|313126368|ref|YP_004036638.1| - 3.4 7.6 14.8 0.047 13.7 4.0 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit SPX PF03105.14 gi|313126368|ref|YP_004036638.1| - 4.2 7.0 7.1 5.1 6.7 5.0 1.2 1 0 0 1 1 1 0 SPX domain DUF972 PF06156.8 gi|313126368|ref|YP_004036638.1| - 4.9 7.5 10.8 0.32 11.3 3.0 2.2 3 0 0 3 3 2 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|313126368|ref|YP_004036638.1| - 4.9 4.8 5.5 6.1 4.5 3.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4094 PF13334.1 gi|313126368|ref|YP_004036638.1| - 6.7 7.1 6.4 2.4 8.6 1.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Abhydrolase_5 PF12695.2 gi|313126369|ref|YP_004036639.1| - 6.3e-07 29.2 0.0 8.7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|313126369|ref|YP_004036639.1| - 6.3e-05 22.9 0.4 9.1e-05 22.4 0.3 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family HSP70 PF00012.15 gi|313126370|ref|YP_004036640.1| - 9.3e-242 803.2 17.5 1.5e-239 795.9 12.1 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|313126370|ref|YP_004036640.1| - 2.4e-20 72.4 0.2 2.4e-20 72.4 0.2 2.1 2 0 0 2 2 2 1 MreB/Mbl protein FtsA PF14450.1 gi|313126370|ref|YP_004036640.1| - 0.0056 16.5 0.1 11 5.9 0.0 4.0 2 1 0 2 2 2 1 Cell division protein FtsA StbA PF06406.6 gi|313126370|ref|YP_004036640.1| - 0.0097 14.8 0.1 0.037 12.9 0.0 2.0 3 0 0 3 3 3 1 StbA protein FGGY_C PF02782.11 gi|313126370|ref|YP_004036640.1| - 0.019 14.6 0.0 0.059 12.9 0.0 2.0 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.13 gi|313126370|ref|YP_004036640.1| - 0.059 12.4 8.4 0.2 10.7 0.0 3.9 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase PhyH PF05721.8 gi|313126370|ref|YP_004036640.1| - 0.15 12.0 4.4 0.26 11.2 1.2 2.2 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) DUF4208 PF13907.1 gi|313126370|ref|YP_004036640.1| - 0.17 12.0 1.2 0.47 10.7 0.9 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) DUF812 PF05667.6 gi|313126370|ref|YP_004036640.1| - 0.38 9.1 13.7 0.81 8.1 9.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF812) CTDII PF01556.13 gi|313126371|ref|YP_004036641.1| - 1.3e-32 111.5 0.0 9.5e-24 83.1 0.0 2.7 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|313126371|ref|YP_004036641.1| - 1.5e-25 88.6 4.4 3.1e-25 87.6 3.0 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|313126371|ref|YP_004036641.1| - 7.9e-16 57.8 18.1 1.7e-15 56.7 12.6 1.6 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.1 gi|313126371|ref|YP_004036641.1| - 0.014 14.7 0.3 0.037 13.4 0.1 1.7 2 0 0 2 2 2 0 A repeated domain in UCH-protein LTXXQ PF07813.7 gi|313126371|ref|YP_004036641.1| - 0.019 15.3 0.7 6.7 7.2 0.0 2.6 2 0 0 2 2 2 0 LTXXQ motif family protein DZR PF12773.2 gi|313126371|ref|YP_004036641.1| - 0.36 10.6 15.2 1.2 9.0 10.6 1.8 1 1 1 2 2 2 0 Double zinc ribbon DUF3353 PF11833.3 gi|313126371|ref|YP_004036641.1| - 0.68 9.3 1.7 1.1 8.6 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) zf-RING_3 PF14369.1 gi|313126371|ref|YP_004036641.1| - 8.8 6.4 16.5 2.2 8.3 0.4 4.2 3 1 1 4 4 4 0 zinc-finger Peptidase_M48 PF01435.13 gi|313126372|ref|YP_004036642.1| - 3.7e-29 101.9 0.2 8.1e-29 100.7 0.0 1.5 1 1 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|313126372|ref|YP_004036642.1| - 2.8e-05 23.2 0.1 6.6e-05 22.0 0.0 1.7 1 1 1 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|313126372|ref|YP_004036642.1| - 0.00014 21.5 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|313126372|ref|YP_004036642.1| - 0.0076 16.2 0.0 0.015 15.3 0.0 1.6 1 1 0 1 1 1 1 Peptidase MA superfamily BSP PF04450.7 gi|313126372|ref|YP_004036642.1| - 0.015 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria IncA PF04156.9 gi|313126372|ref|YP_004036642.1| - 0.019 14.5 2.4 0.031 13.8 1.7 1.3 1 0 0 1 1 1 0 IncA protein DUF2201_N PF13203.1 gi|313126372|ref|YP_004036642.1| - 0.061 12.4 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF4538 PF15061.1 gi|313126372|ref|YP_004036642.1| - 7.8 5.8 5.8 22 4.4 4.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) Cupin_2 PF07883.6 gi|313126373|ref|YP_004036643.1| - 5.4e-10 38.6 0.7 6.4e-10 38.4 0.5 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.1 gi|313126373|ref|YP_004036643.1| - 3.8e-06 26.5 0.0 4.2e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|313126373|ref|YP_004036643.1| - 4.7e-05 22.6 0.0 6.6e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|313126373|ref|YP_004036643.1| - 0.0015 18.1 0.1 0.0049 16.4 0.0 1.7 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|313126373|ref|YP_004036643.1| - 0.021 14.4 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C PF05726.8 gi|313126373|ref|YP_004036643.1| - 0.092 12.8 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain DUF1498 PF07385.7 gi|313126373|ref|YP_004036643.1| - 0.12 11.4 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) cobW PF02492.14 gi|313126374|ref|YP_004036644.1| - 1.4e-49 167.9 0.0 1.9e-49 167.5 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|313126374|ref|YP_004036644.1| - 4.5e-26 90.3 0.0 7.6e-26 89.6 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain AAA_10 PF12846.2 gi|313126374|ref|YP_004036644.1| - 3.5e-05 23.3 0.0 6.3e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain T2SE PF00437.15 gi|313126374|ref|YP_004036644.1| - 0.00072 18.5 0.1 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ArgK PF03308.11 gi|313126374|ref|YP_004036644.1| - 0.0013 17.6 0.0 1.2 7.8 0.0 3.1 3 0 0 3 3 3 1 ArgK protein AAA_19 PF13245.1 gi|313126374|ref|YP_004036644.1| - 0.0046 16.6 0.3 0.0096 15.6 0.2 1.5 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|313126374|ref|YP_004036644.1| - 0.0058 16.3 0.0 0.0086 15.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase UPF0079 PF02367.12 gi|313126374|ref|YP_004036644.1| - 0.012 15.2 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 GTP_EFTU PF00009.22 gi|313126374|ref|YP_004036644.1| - 0.016 14.6 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|313126374|ref|YP_004036644.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|313126374|ref|YP_004036644.1| - 0.021 14.8 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|313126374|ref|YP_004036644.1| - 0.023 13.7 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.1 gi|313126374|ref|YP_004036644.1| - 0.05 13.1 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313126374|ref|YP_004036644.1| - 0.058 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313126374|ref|YP_004036644.1| - 0.063 14.1 0.5 0.19 12.5 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|313126374|ref|YP_004036644.1| - 0.071 12.9 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313126374|ref|YP_004036644.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|313126374|ref|YP_004036644.1| - 0.16 12.3 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1059 PF06348.6 gi|313126376|ref|YP_004036646.1| - 0.012 15.4 0.2 0.014 15.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) ADH_N PF08240.7 gi|313126377|ref|YP_004036647.1| - 1.4e-27 95.6 0.7 3e-27 94.5 0.5 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_assoc PF13823.1 gi|313126377|ref|YP_004036647.1| - 1.5e-10 40.5 1.0 3.6e-10 39.2 0.7 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N PF00107.21 gi|313126377|ref|YP_004036647.1| - 1.3e-09 37.6 0.1 2.7e-09 36.6 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.2 gi|313126377|ref|YP_004036647.1| - 0.00096 19.7 0.0 0.0025 18.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Shikimate_DH PF01488.15 gi|313126377|ref|YP_004036647.1| - 0.0021 18.1 0.0 0.06 13.4 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|313126377|ref|YP_004036647.1| - 0.0097 14.4 0.1 0.07 11.5 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein AMP-binding PF00501.23 gi|313126378|ref|YP_004036648.1| - 5.6e-08 31.6 0.1 1.1e-06 27.3 0.0 2.5 1 1 2 3 3 3 2 AMP-binding enzyme ABC_tran PF00005.22 gi|313126379|ref|YP_004036649.1| - 2.1e-35 122.0 0.0 3.6e-35 121.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313126379|ref|YP_004036649.1| - 5.7e-11 42.2 0.3 1.7e-10 40.7 0.2 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|313126379|ref|YP_004036649.1| - 1.5e-07 31.6 0.0 0.001 19.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313126379|ref|YP_004036649.1| - 0.0035 16.6 0.0 0.18 11.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313126379|ref|YP_004036649.1| - 0.0043 17.2 0.1 0.066 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|313126379|ref|YP_004036649.1| - 0.014 15.5 0.7 0.12 12.5 0.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|313126379|ref|YP_004036649.1| - 0.014 15.3 0.2 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|313126379|ref|YP_004036649.1| - 0.025 13.2 0.0 0.033 12.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|313126379|ref|YP_004036649.1| - 0.06 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|313126379|ref|YP_004036649.1| - 0.063 13.6 0.0 0.24 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|313126379|ref|YP_004036649.1| - 0.066 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|313126379|ref|YP_004036649.1| - 0.19 12.5 0.6 0.56 11.0 0.3 2.0 2 1 0 2 2 2 0 AAA domain SBP_bac_8 PF13416.1 gi|313126380|ref|YP_004036650.1| - 2.2e-25 89.9 10.3 2.9e-25 89.5 7.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313126380|ref|YP_004036650.1| - 2.9e-18 66.0 1.8 3.5e-18 65.8 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|313126380|ref|YP_004036650.1| - 0.016 14.3 1.1 0.03 13.4 0.8 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF965 PF06135.7 gi|313126380|ref|YP_004036650.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF965) BPD_transp_1 PF00528.17 gi|313126381|ref|YP_004036651.1| - 5.3e-14 52.1 21.4 5.3e-14 52.1 14.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313126382|ref|YP_004036652.1| - 1.7e-16 60.2 13.8 1.7e-16 60.2 9.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AMP-binding PF00501.23 gi|313126383|ref|YP_004036653.1| - 1e-78 264.6 0.0 1.3e-78 264.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313126383|ref|YP_004036653.1| - 3.1e-17 63.3 0.3 6.3e-17 62.2 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1336 PF07059.7 gi|313126383|ref|YP_004036653.1| - 0.083 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1336) SCFA_trans PF02667.9 gi|313126384|ref|YP_004036654.1| - 1.4e-127 426.2 23.2 1.6e-127 426.0 16.1 1.1 1 0 0 1 1 1 1 Short chain fatty acid transporter DcuC PF03606.10 gi|313126384|ref|YP_004036654.1| - 0.0014 16.9 7.0 0.0014 16.9 4.9 2.4 2 1 1 3 3 3 2 C4-dicarboxylate anaerobic carrier Acetyltransf_1 PF00583.19 gi|313126385|ref|YP_004036655.1| - 3.1e-07 30.3 0.0 9.1e-07 28.8 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313126385|ref|YP_004036655.1| - 0.0013 18.8 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313126385|ref|YP_004036655.1| - 0.0084 16.2 0.0 0.016 15.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain dCMP_cyt_deam_1 PF00383.17 gi|313126388|ref|YP_004036658.1| - 1.1e-17 63.5 0.4 1.3e-17 63.2 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|313126388|ref|YP_004036658.1| - 1.1e-11 44.8 0.1 1.6e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|313126388|ref|YP_004036658.1| - 0.13 11.9 0.5 0.39 10.3 0.4 1.6 1 1 1 2 2 2 0 MafB19-like deaminase YwqJ-deaminase PF14431.1 gi|313126388|ref|YP_004036658.1| - 0.17 11.7 0.8 0.5 10.2 0.5 1.8 1 1 1 2 2 2 0 YwqJ-like deaminase XOO_2897-deam PF14440.1 gi|313126388|ref|YP_004036658.1| - 0.4 10.3 1.7 0.86 9.3 1.2 1.6 1 1 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase PNP_UDP_1 PF01048.15 gi|313126389|ref|YP_004036659.1| - 5.9e-46 156.3 2.2 7.4e-46 156.0 1.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.9 gi|313126390|ref|YP_004036660.1| - 1.1e-18 67.8 0.0 1.9e-18 67.0 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313126390|ref|YP_004036660.1| - 2.4e-08 34.2 0.2 7e-07 29.5 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313126390|ref|YP_004036660.1| - 7.5e-06 26.1 0.0 0.014 15.5 0.0 3.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|313126390|ref|YP_004036660.1| - 0.024 14.2 0.2 3.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2080 PF09853.4 gi|313126391|ref|YP_004036661.1| - 0.00053 19.6 0.0 0.00068 19.3 0.0 1.2 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) HrcA_DNA-bdg PF03444.10 gi|313126392|ref|YP_004036662.1| - 8.3e-39 130.8 0.1 1.2e-38 130.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|313126392|ref|YP_004036662.1| - 1.3e-09 38.0 0.0 2.1e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|313126392|ref|YP_004036662.1| - 8.8e-08 31.6 0.0 1.4e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313126392|ref|YP_004036662.1| - 0.0021 17.7 0.0 0.0036 16.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313126392|ref|YP_004036662.1| - 0.085 12.2 0.1 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313126392|ref|YP_004036662.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|313126392|ref|YP_004036662.1| - 0.15 11.6 0.0 0.51 9.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Epimerase PF01370.16 gi|313126393|ref|YP_004036663.1| - 1.9e-43 148.5 0.3 2.4e-43 148.2 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313126393|ref|YP_004036663.1| - 8.4e-19 67.5 0.0 1e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313126393|ref|YP_004036663.1| - 1.2e-13 50.4 0.0 1.8e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|313126393|ref|YP_004036663.1| - 2.8e-09 36.2 0.0 2.5e-06 26.6 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313126393|ref|YP_004036663.1| - 3e-09 36.1 0.6 2.5e-07 29.8 0.4 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|313126393|ref|YP_004036663.1| - 4e-06 26.8 0.2 0.0078 16.1 0.1 2.4 1 1 1 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|313126393|ref|YP_004036663.1| - 1.4e-05 25.2 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding 2OG-FeII_Oxy_4 PF13661.1 gi|313126393|ref|YP_004036663.1| - 0.008 15.8 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 1 2OG-Fe(II) oxygenase superfamily KR PF08659.5 gi|313126393|ref|YP_004036663.1| - 0.019 14.6 0.1 0.41 10.2 0.0 2.2 1 1 0 2 2 2 0 KR domain Ldh_1_N PF00056.18 gi|313126393|ref|YP_004036663.1| - 0.16 11.7 0.1 0.55 10.0 0.0 1.9 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Arginase PF00491.16 gi|313126394|ref|YP_004036664.1| - 1.8e-74 250.5 6.6 2.1e-74 250.3 4.6 1.0 1 0 0 1 1 1 1 Arginase family DUF4314 PF14192.1 gi|313126394|ref|YP_004036664.1| - 0.11 12.7 0.1 0.56 10.5 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4314) DNA_topoisoIV PF00521.15 gi|313126395|ref|YP_004036665.1| - 4.4e-156 520.0 0.0 7.3e-156 519.2 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|313126395|ref|YP_004036665.1| - 5.4e-71 233.6 7.3 3.8e-16 58.1 0.2 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.20 gi|313126396|ref|YP_004036666.1| - 6.7e-61 204.5 0.5 1.2e-60 203.6 0.1 1.6 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|313126396|ref|YP_004036666.1| - 1.3e-29 101.6 0.0 2.8e-29 100.6 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|313126396|ref|YP_004036666.1| - 2.1e-25 88.5 0.0 5.3e-25 87.3 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|313126396|ref|YP_004036666.1| - 2e-20 72.5 0.1 5e-20 71.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|313126396|ref|YP_004036666.1| - 8.7e-05 22.1 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Topo-VIb_trans PF09239.6 gi|313126397|ref|YP_004036667.1| - 1.7e-65 219.4 0.0 3.5e-65 218.4 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|313126397|ref|YP_004036667.1| - 4.3e-17 61.8 0.0 1.2e-16 60.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|313126397|ref|YP_004036667.1| - 9e-14 51.2 0.0 3.1e-13 49.5 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|313126397|ref|YP_004036667.1| - 0.00017 21.3 1.2 0.00058 19.6 0.0 2.4 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|313126397|ref|YP_004036667.1| - 0.0033 17.1 0.1 0.019 14.6 0.0 2.3 3 0 0 3 3 3 1 GHKL domain Herpes_UL25 PF01499.11 gi|313126397|ref|YP_004036667.1| - 0.28 9.4 1.5 0.45 8.7 1.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL25 family TP6A_N PF04406.9 gi|313126398|ref|YP_004036668.1| - 2.4e-20 71.9 0.2 4.1e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Abhydrolase_6 PF12697.2 gi|313126399|ref|YP_004036669.1| - 7.2e-26 91.4 5.9 8.3e-26 91.2 4.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313126399|ref|YP_004036669.1| - 3.4e-17 62.7 0.1 1e-08 35.0 0.3 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313126399|ref|YP_004036669.1| - 1.7e-12 47.2 0.0 3.6e-12 46.2 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|313126399|ref|YP_004036669.1| - 5.1e-06 26.3 0.0 1.1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.15 gi|313126399|ref|YP_004036669.1| - 0.0015 18.0 0.6 0.0068 15.8 0.2 1.9 2 0 0 2 2 2 1 Putative esterase DUF2048 PF09752.4 gi|313126399|ref|YP_004036669.1| - 0.016 14.1 0.0 3.9 6.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Thioesterase PF00975.15 gi|313126399|ref|YP_004036669.1| - 0.016 15.4 0.0 0.026 14.7 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain DLH PF01738.13 gi|313126399|ref|YP_004036669.1| - 0.094 11.9 0.0 5.4 6.2 0.0 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family Lactamase_B_3 PF13483.1 gi|313126400|ref|YP_004036670.1| - 7.4e-31 107.0 0.0 9.3e-31 106.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|313126400|ref|YP_004036670.1| - 0.00044 19.8 0.1 0.00063 19.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Phosphodiest PF01663.17 gi|313126401|ref|YP_004036671.1| - 4.5e-56 190.7 1.0 5.2e-56 190.5 0.7 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|313126401|ref|YP_004036671.1| - 0.00031 20.0 0.1 0.059 12.5 0.0 2.7 3 0 0 3 3 3 2 Sulfatase DUF1501 PF07394.7 gi|313126401|ref|YP_004036671.1| - 0.0032 16.3 0.0 0.0069 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) NAD_binding_5 PF07994.7 gi|313126402|ref|YP_004036672.1| - 1e-54 186.0 0.0 1.1e-54 185.8 0.0 1.0 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|313126402|ref|YP_004036672.1| - 1.7e-29 101.9 0.0 2.8e-29 101.2 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase TatD_DNase PF01026.16 gi|313126403|ref|YP_004036673.1| - 1.1e-27 96.9 0.0 1.3e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase PTE PF02126.13 gi|313126403|ref|YP_004036673.1| - 0.02 13.9 0.0 0.069 12.1 0.0 1.7 2 0 0 2 2 2 0 Phosphotriesterase family AP_endonuc_2 PF01261.19 gi|313126404|ref|YP_004036674.1| - 2.4e-37 128.3 1.0 3.5e-37 127.7 0.3 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UbiA PF01040.13 gi|313126405|ref|YP_004036675.1| - 8.9e-18 64.4 37.5 7.8e-17 61.3 26.0 2.0 1 1 0 1 1 1 1 UbiA prenyltransferase family AP_endonuc_2 PF01261.19 gi|313126406|ref|YP_004036676.1| - 7.9e-43 146.2 1.4 1.2e-42 145.5 0.2 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|313126406|ref|YP_004036676.1| - 0.0048 17.0 0.0 0.17 12.0 0.0 2.3 1 1 0 1 1 1 1 Radical SAM superfamily AP_endonuc_2_N PF07582.7 gi|313126406|ref|YP_004036676.1| - 0.031 13.8 0.1 0.25 10.9 0.0 2.4 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus DNA_ligase_A_M PF01068.16 gi|313126407|ref|YP_004036677.1| - 1.7e-45 154.9 0.0 2.4e-45 154.3 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|313126407|ref|YP_004036677.1| - 1.1e-40 139.3 0.0 6.7e-40 136.7 0.0 2.1 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|313126407|ref|YP_004036677.1| - 2.1e-16 60.1 0.0 5.8e-16 58.6 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Nop14 PF04147.7 gi|313126407|ref|YP_004036677.1| - 0.55 8.0 7.2 0.7 7.7 5.0 1.1 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.9 gi|313126407|ref|YP_004036677.1| - 0.57 8.1 5.5 0.82 7.6 3.8 1.1 1 0 0 1 1 1 0 CDC45-like protein Proteasome PF00227.21 gi|313126409|ref|YP_004036679.1| - 3.6e-51 173.1 0.5 4.2e-51 172.9 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit BDM PF10684.4 gi|313126409|ref|YP_004036679.1| - 0.14 12.4 0.5 3.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Putative biofilm-dependent modulation protein DUF555 PF04475.7 gi|313126411|ref|YP_004036681.1| - 1.5e-45 153.3 0.1 1.8e-45 153.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CBS PF00571.23 gi|313126412|ref|YP_004036682.1| - 1.5e-22 79.1 4.6 2.4e-15 56.0 0.1 3.1 2 1 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|313126412|ref|YP_004036682.1| - 8.7e-12 44.7 0.1 1.4e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|313126412|ref|YP_004036682.1| - 4.7e-11 42.7 0.7 9.6e-11 41.7 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|313126412|ref|YP_004036682.1| - 1.6e-09 37.6 0.0 2.8e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|313126412|ref|YP_004036682.1| - 6.5e-05 22.6 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|313126412|ref|YP_004036682.1| - 0.0037 16.8 0.1 0.0075 15.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|313126412|ref|YP_004036682.1| - 0.0066 16.6 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|313126412|ref|YP_004036682.1| - 0.066 13.0 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain YjgP_YjgQ PF03739.9 gi|313126413|ref|YP_004036683.1| - 3.6 6.2 8.8 4.1 6.0 6.1 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family p450 PF00067.17 gi|313126414|ref|YP_004036684.1| - 3.4e-78 263.2 0.0 4.3e-78 262.9 0.0 1.1 1 0 0 1 1 1 1 Cytochrome P450 AIRS_C PF02769.17 gi|313126415|ref|YP_004036685.1| - 5.2e-21 75.2 0.0 9e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|313126415|ref|YP_004036685.1| - 2.5e-15 56.4 0.7 5.4e-15 55.4 0.5 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.17 gi|313126417|ref|YP_004036687.1| - 3.4e-09 35.9 16.8 3.4e-09 35.9 11.6 2.3 2 1 0 2 2 2 1 Peptidase family M50 Kinocilin PF15033.1 gi|313126417|ref|YP_004036687.1| - 0.031 13.8 1.7 0.058 12.9 1.2 1.6 1 0 0 1 1 1 0 Kinocilin protein TraB PF01963.12 gi|313126418|ref|YP_004036688.1| - 1e-38 133.2 1.5 2.8e-19 69.5 0.0 2.7 2 1 1 3 3 3 2 TraB family DUF399 PF04187.8 gi|313126418|ref|YP_004036688.1| - 0.06 12.8 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF399 MoaE PF02391.12 gi|313126418|ref|YP_004036688.1| - 0.091 12.5 0.1 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 MoaE protein DUF4147 PF13660.1 gi|313126419|ref|YP_004036689.1| - 2.3e-80 269.1 0.7 3.4e-80 268.6 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|313126419|ref|YP_004036689.1| - 2.3e-27 95.2 1.0 5.1e-27 94.0 0.7 1.6 1 0 0 1 1 1 1 MOFRL family HTH_20 PF12840.2 gi|313126420|ref|YP_004036690.1| - 2.8e-14 52.6 0.5 4.9e-14 51.8 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313126420|ref|YP_004036690.1| - 3.2e-05 23.2 0.0 6.9e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313126420|ref|YP_004036690.1| - 8.9e-05 22.0 0.1 0.00017 21.1 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313126420|ref|YP_004036690.1| - 0.0052 16.4 0.0 0.011 15.3 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DNA_Packaging_2 PF11123.3 gi|313126420|ref|YP_004036690.1| - 0.073 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 DNA packaging protein HTH_5 PF01022.15 gi|313126420|ref|YP_004036690.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|313126420|ref|YP_004036690.1| - 0.13 12.3 0.0 0.3 11.1 0.0 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|313126420|ref|YP_004036690.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DNase-RNase PF02577.9 gi|313126421|ref|YP_004036691.1| - 1.9e-38 130.7 0.0 2.2e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.17 gi|313126424|ref|YP_004036694.1| - 4.9e-187 622.6 0.0 6.7e-187 622.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|313126424|ref|YP_004036694.1| - 1.9e-30 105.8 0.0 7.5e-11 41.2 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|313126424|ref|YP_004036694.1| - 1.9e-29 102.4 0.4 3.6e-29 101.5 0.3 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|313126424|ref|YP_004036694.1| - 0.0011 17.6 0.0 0.026 13.1 0.0 2.5 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|313126424|ref|YP_004036694.1| - 0.0027 16.8 0.0 0.008 15.3 0.0 1.8 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|313126424|ref|YP_004036694.1| - 0.0052 16.1 0.0 0.024 13.9 0.0 2.1 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-FPG_IleRS PF06827.9 gi|313126424|ref|YP_004036694.1| - 0.036 13.7 0.3 0.096 12.3 0.2 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS SPW PF03779.9 gi|313126425|ref|YP_004036695.1| - 0.78 9.1 9.4 1 8.7 1.5 3.2 2 0 0 2 2 2 0 SPW repeat FGGY_N PF00370.16 gi|313126426|ref|YP_004036696.1| - 5.2e-74 248.6 0.0 6.9e-74 248.2 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|313126426|ref|YP_004036696.1| - 5.2e-61 205.7 0.7 8.8e-61 204.9 0.5 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|313126426|ref|YP_004036696.1| - 6.2e-05 22.4 0.2 0.0041 16.4 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.19 gi|313126427|ref|YP_004036697.1| - 4.6e-64 216.5 7.4 5.4e-64 216.3 5.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313126427|ref|YP_004036697.1| - 1.1e-10 41.0 7.5 1.6e-10 40.4 5.2 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|313126427|ref|YP_004036697.1| - 2.7e-06 26.6 0.9 4.5e-06 25.9 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|313126427|ref|YP_004036697.1| - 1.4e-05 25.0 4.1 0.00094 19.1 2.8 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313126427|ref|YP_004036697.1| - 5.9e-05 22.3 7.4 0.00012 21.3 5.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313126427|ref|YP_004036697.1| - 0.00058 19.9 0.1 0.055 13.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313126427|ref|YP_004036697.1| - 0.00099 18.2 4.5 0.41 9.7 0.8 2.7 3 0 0 3 3 3 2 Thi4 family Pyr_redox PF00070.22 gi|313126427|ref|YP_004036697.1| - 0.0022 18.3 2.1 0.15 12.4 1.7 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|313126427|ref|YP_004036697.1| - 0.004 16.8 0.4 0.0099 15.5 0.3 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|313126427|ref|YP_004036697.1| - 0.0062 16.7 0.0 0.25 11.5 0.0 2.9 3 0 0 3 3 3 1 Putative NAD(P)-binding YbjQ_1 PF01906.12 gi|313126427|ref|YP_004036697.1| - 0.05 14.0 0.0 0.23 11.8 0.0 2.1 2 0 0 2 2 2 0 Putative heavy-metal-binding GIDA PF01134.17 gi|313126427|ref|YP_004036697.1| - 0.058 12.2 3.7 2.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|313126427|ref|YP_004036697.1| - 0.068 13.2 4.0 0.14 12.1 2.2 2.0 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.1 gi|313126427|ref|YP_004036697.1| - 0.078 12.9 7.2 0.2 11.6 1.9 2.8 2 1 1 3 3 3 0 NADH(P)-binding HI0933_like PF03486.9 gi|313126427|ref|YP_004036697.1| - 0.098 11.1 4.3 1.5 7.1 1.3 2.1 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|313126427|ref|YP_004036697.1| - 0.1 12.0 1.2 0.22 10.9 0.8 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.19 gi|313126427|ref|YP_004036697.1| - 0.12 11.4 1.8 0.62 9.0 0.2 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|313126427|ref|YP_004036697.1| - 5.7 5.7 5.7 8.2 5.2 1.3 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein OrfB_IS605 PF01385.14 gi|313126429|ref|YP_004036699.1| - 8.1e-29 100.6 4.4 1.5e-28 99.7 3.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313126429|ref|YP_004036699.1| - 2.8e-18 65.3 0.1 6.2e-18 64.2 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|313126429|ref|YP_004036699.1| - 0.00072 18.8 0.5 0.0014 17.9 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L18p PF00861.17 gi|313126429|ref|YP_004036699.1| - 0.035 14.2 0.6 0.08 13.1 0.4 1.7 1 0 0 1 1 1 0 Ribosomal L18p/L5e family zf-ribbon_3 PF13248.1 gi|313126429|ref|YP_004036699.1| - 0.047 12.9 1.1 1 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|313126429|ref|YP_004036699.1| - 0.08 12.4 0.3 0.21 11.0 0.2 1.7 1 0 0 1 1 1 0 Transposase zinc-binding domain CCG PF02754.11 gi|313126432|ref|YP_004036702.1| - 2.5e-22 78.6 1.7 1.7e-11 43.9 0.0 2.7 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|313126432|ref|YP_004036702.1| - 1.2e-07 31.6 7.6 1.2e-07 31.6 5.2 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|313126432|ref|YP_004036702.1| - 4.6e-06 26.8 14.8 4.7e-06 26.8 6.3 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313126432|ref|YP_004036702.1| - 5.2e-05 23.5 9.0 0.021 15.2 0.2 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313126432|ref|YP_004036702.1| - 0.00034 20.7 16.5 0.011 16.0 8.6 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313126432|ref|YP_004036702.1| - 0.0018 18.0 19.8 0.009 15.8 10.4 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain DUF3390 PF11870.3 gi|313126432|ref|YP_004036702.1| - 0.014 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_21 PF14697.1 gi|313126432|ref|YP_004036702.1| - 0.066 13.0 13.3 0.096 12.5 0.6 3.3 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313126432|ref|YP_004036702.1| - 0.093 13.1 19.4 0.092 13.1 9.9 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain DUF1385 PF07136.6 gi|313126432|ref|YP_004036702.1| - 0.094 11.7 0.1 0.15 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) DDE_Tnp_ISAZ013 PF07592.6 gi|313126432|ref|YP_004036702.1| - 0.12 11.1 0.0 0.25 10.0 0.0 1.5 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Fer4_16 PF13484.1 gi|313126432|ref|YP_004036702.1| - 0.25 12.1 17.5 0.21 12.3 8.6 3.3 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain zf-CSL PF05207.8 gi|313126432|ref|YP_004036702.1| - 0.38 10.3 0.0 0.38 10.3 0.0 4.4 3 2 0 3 3 2 0 CSL zinc finger FAD_binding_2 PF00890.19 gi|313126433|ref|YP_004036703.1| - 1.1e-28 100.2 3.1 1.4e-28 99.9 2.1 1.0 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|313126433|ref|YP_004036703.1| - 7.9e-09 35.0 0.7 0.00033 19.8 1.5 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.19 gi|313126433|ref|YP_004036703.1| - 1e-08 34.5 1.0 0.0007 18.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313126433|ref|YP_004036703.1| - 4.5e-05 23.4 0.0 0.084 12.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313126433|ref|YP_004036703.1| - 0.00014 20.9 1.3 0.00031 19.7 0.9 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|313126433|ref|YP_004036703.1| - 0.00014 22.2 0.1 0.021 15.1 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313126433|ref|YP_004036703.1| - 0.00027 19.5 0.2 0.13 10.7 0.4 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|313126433|ref|YP_004036703.1| - 0.0054 15.8 0.7 0.44 9.5 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|313126433|ref|YP_004036703.1| - 0.0069 16.6 0.5 0.021 15.0 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding Hemerythrin PF01814.18 gi|313126433|ref|YP_004036703.1| - 0.028 14.5 0.3 0.057 13.5 0.2 1.4 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain NAD_binding_8 PF13450.1 gi|313126433|ref|YP_004036703.1| - 0.23 11.5 1.9 0.5 10.4 0.5 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313126434|ref|YP_004036704.1| - 1.2e-64 218.5 0.8 1.6e-64 218.1 0.6 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|313126434|ref|YP_004036704.1| - 2.2e-08 34.0 1.0 1.1e-07 31.8 0.5 2.4 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.9 gi|313126434|ref|YP_004036704.1| - 2.8e-08 33.9 0.1 0.0019 18.1 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313126434|ref|YP_004036704.1| - 1.5e-06 27.3 3.0 1.1e-05 24.4 2.1 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|313126434|ref|YP_004036704.1| - 0.0013 17.8 7.0 0.026 13.6 4.8 2.2 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313126434|ref|YP_004036704.1| - 0.0099 15.8 0.3 0.033 14.2 0.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|313126434|ref|YP_004036704.1| - 0.011 14.7 6.9 0.1 11.6 4.8 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|313126434|ref|YP_004036704.1| - 0.024 15.0 0.6 0.085 13.2 0.4 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|313126434|ref|YP_004036704.1| - 0.031 13.9 0.2 0.054 13.1 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|313126434|ref|YP_004036704.1| - 0.24 10.2 0.2 16 4.2 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AAA_16 PF13191.1 gi|313126435|ref|YP_004036705.1| - 6.9e-16 58.7 1.1 6.9e-16 58.7 0.8 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126435|ref|YP_004036705.1| - 3.5e-06 27.1 0.0 7.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313126435|ref|YP_004036705.1| - 0.0027 17.1 0.3 0.011 15.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain MarR_2 PF12802.2 gi|313126435|ref|YP_004036705.1| - 0.0076 15.8 0.3 0.034 13.8 0.2 2.2 1 0 0 1 1 1 1 MarR family MMR_HSR1 PF01926.18 gi|313126435|ref|YP_004036705.1| - 0.045 13.7 0.0 0.082 12.8 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|313126435|ref|YP_004036705.1| - 0.062 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|313126435|ref|YP_004036705.1| - 0.063 13.1 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|313126435|ref|YP_004036705.1| - 0.069 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|313126435|ref|YP_004036705.1| - 0.08 12.7 7.6 0.037 13.7 1.9 2.8 1 1 1 2 2 2 0 Part of AAA domain Pas_Saposin PF09016.5 gi|313126435|ref|YP_004036705.1| - 0.11 12.4 0.1 2.9 7.9 0.0 2.7 2 1 1 3 3 2 0 Pas factor saposin fold Miro PF08477.8 gi|313126435|ref|YP_004036705.1| - 0.17 12.4 0.0 0.33 11.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Guanylate_kin PF00625.16 gi|313126435|ref|YP_004036705.1| - 0.21 10.9 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase SnoaL_2 PF12680.2 gi|313126435|ref|YP_004036705.1| - 1.6 9.1 11.9 0.67 10.3 0.8 3.6 2 2 1 3 3 3 0 SnoaL-like domain Hydrolase_3 PF08282.7 gi|313126436|ref|YP_004036706.1| - 5.6e-25 88.3 0.0 4.2e-15 56.0 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|313126436|ref|YP_004036706.1| - 4.1e-05 23.0 0.0 0.00031 20.1 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|313126436|ref|YP_004036706.1| - 0.0032 17.6 2.9 0.1 12.7 0.0 2.9 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313126436|ref|YP_004036706.1| - 0.0046 17.3 0.4 0.19 12.1 0.3 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|313126436|ref|YP_004036706.1| - 0.031 13.1 0.1 0.16 10.8 0.0 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase CutA1 PF03091.10 gi|313126437|ref|YP_004036707.1| - 3.7e-28 97.1 0.0 4.1e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Phage_term_smal PF05944.7 gi|313126437|ref|YP_004036707.1| - 0.032 13.9 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Phage small terminase subunit Methyltransf_11 PF08241.7 gi|313126439|ref|YP_004036709.1| - 1.2e-18 67.3 0.0 2.2e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126439|ref|YP_004036709.1| - 1.4e-10 41.4 0.1 2.1e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126439|ref|YP_004036709.1| - 2e-09 37.2 0.0 2.7e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126439|ref|YP_004036709.1| - 2.1e-08 34.0 0.0 3.1e-08 33.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313126439|ref|YP_004036709.1| - 3.8e-07 29.4 0.0 5.2e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|313126439|ref|YP_004036709.1| - 2.2e-06 27.7 0.3 3.7e-06 26.9 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313126439|ref|YP_004036709.1| - 5e-06 27.0 0.0 9.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313126439|ref|YP_004036709.1| - 0.00064 20.1 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|313126439|ref|YP_004036709.1| - 0.0076 15.3 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|313126439|ref|YP_004036709.1| - 0.049 13.2 0.0 0.1 12.1 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase DREV PF05219.7 gi|313126439|ref|YP_004036709.1| - 0.074 11.9 0.0 0.28 10.0 0.0 1.7 2 0 0 2 2 2 0 DREV methyltransferase ADH_zinc_N PF00107.21 gi|313126439|ref|YP_004036709.1| - 0.088 12.3 0.2 0.19 11.2 0.1 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase SplA PF11132.3 gi|313126439|ref|YP_004036709.1| - 0.11 12.1 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) FtsJ PF01728.14 gi|313126439|ref|YP_004036709.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF4350 PF14258.1 gi|313126439|ref|YP_004036709.1| - 0.16 12.2 1.2 17 5.7 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4350) A2L_zn_ribbon PF08792.5 gi|313126440|ref|YP_004036710.1| - 0.0018 17.7 0.5 1.2 8.6 0.1 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain Ogr_Delta PF04606.7 gi|313126440|ref|YP_004036710.1| - 0.002 17.7 0.4 0.29 10.8 0.1 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-trcl PF13451.1 gi|313126440|ref|YP_004036710.1| - 0.0063 16.1 0.8 1.6 8.4 0.0 2.1 2 0 0 2 2 2 2 Probable zinc-binding domain DZR PF12773.2 gi|313126440|ref|YP_004036710.1| - 0.0088 15.8 0.6 0.011 15.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-UBR PF02207.15 gi|313126440|ref|YP_004036710.1| - 0.0091 15.6 0.5 0.011 15.4 0.4 1.1 1 0 0 1 1 1 1 Putative zinc finger in N-recognin (UBR box) DNA_RNApol_7kD PF03604.8 gi|313126440|ref|YP_004036710.1| - 0.012 15.0 3.4 0.034 13.5 2.4 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|313126440|ref|YP_004036710.1| - 0.015 14.9 0.9 1.6 8.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|313126440|ref|YP_004036710.1| - 0.017 14.8 0.3 2.1 8.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313126440|ref|YP_004036710.1| - 0.028 14.1 1.1 0.034 13.8 0.7 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|313126440|ref|YP_004036710.1| - 0.034 14.0 5.7 0.2 11.6 3.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|313126440|ref|YP_004036710.1| - 0.034 13.6 0.1 0.035 13.5 0.0 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain XPA_N PF01286.13 gi|313126440|ref|YP_004036710.1| - 0.038 13.6 1.3 4.6 7.0 0.0 2.3 2 0 0 2 2 2 0 XPA protein N-terminal HypA PF01155.14 gi|313126440|ref|YP_004036710.1| - 0.046 13.4 0.5 0.054 13.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-H2C2_2 PF13465.1 gi|313126440|ref|YP_004036710.1| - 0.076 13.3 0.7 1.1 9.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain NOB1_Zn_bind PF08772.6 gi|313126440|ref|YP_004036710.1| - 0.087 12.6 0.3 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PolC_DP2 PF03833.8 gi|313126440|ref|YP_004036710.1| - 0.18 9.4 0.2 0.18 9.4 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF3797 PF12677.2 gi|313126440|ref|YP_004036710.1| - 0.22 11.1 2.6 7.5 6.2 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Lar_restr_allev PF14354.1 gi|313126440|ref|YP_004036710.1| - 0.29 11.4 3.4 3.8 7.8 2.3 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.1 gi|313126440|ref|YP_004036710.1| - 0.64 9.9 0.1 0.64 9.9 0.1 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|313126440|ref|YP_004036710.1| - 0.83 9.2 3.8 14 5.2 2.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain GCC2_GCC3 PF07699.8 gi|313126440|ref|YP_004036710.1| - 0.91 9.1 6.8 2.6 7.7 2.6 2.0 1 1 1 2 2 2 0 GCC2 and GCC3 zf-C2H2_6 PF13912.1 gi|313126440|ref|YP_004036710.1| - 1.8 8.5 3.9 7.4 6.6 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF368 PF04018.8 gi|313126441|ref|YP_004036711.1| - 6.4e-68 228.7 20.7 8.4e-68 228.3 14.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) UDPG_MGDP_dh_N PF03721.9 gi|313126442|ref|YP_004036712.1| - 3.6e-55 186.2 0.1 7.7e-55 185.1 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|313126442|ref|YP_004036712.1| - 1.8e-34 117.7 0.1 5.1e-34 116.3 0.1 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|313126442|ref|YP_004036712.1| - 2.2e-28 98.5 0.4 8.4e-28 96.6 0.1 2.1 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|313126442|ref|YP_004036712.1| - 2.4e-08 33.8 0.1 1.1e-06 28.5 0.0 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|313126442|ref|YP_004036712.1| - 2e-07 30.8 0.0 4.9e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|313126442|ref|YP_004036712.1| - 2.3e-05 24.7 0.5 0.26 11.7 0.0 3.9 4 1 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|313126442|ref|YP_004036712.1| - 0.00015 21.2 0.2 0.001 18.4 0.1 2.1 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|313126442|ref|YP_004036712.1| - 0.0004 19.9 0.0 0.0009 18.8 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|313126442|ref|YP_004036712.1| - 0.0027 18.2 4.7 0.055 14.0 0.0 3.5 3 1 1 4 4 4 1 Methyltransferase domain NAD_binding_2 PF03446.10 gi|313126442|ref|YP_004036712.1| - 0.0068 16.2 0.1 0.29 10.9 0.0 2.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|313126442|ref|YP_004036712.1| - 0.0071 16.7 0.3 0.035 14.4 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|313126442|ref|YP_004036712.1| - 0.0078 16.2 0.8 0.046 13.7 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_11 PF14833.1 gi|313126442|ref|YP_004036712.1| - 0.045 13.8 0.1 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase STT3 PF02516.9 gi|313126443|ref|YP_004036713.1| - 3e-25 89.1 30.7 7.7e-24 84.5 18.2 2.8 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF4644 PF15486.1 gi|313126443|ref|YP_004036713.1| - 4.3 7.2 7.4 25 4.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4644) Epimerase PF01370.16 gi|313126444|ref|YP_004036714.1| - 2.9e-52 177.4 0.2 4.9e-52 176.7 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313126444|ref|YP_004036714.1| - 1.3e-21 76.5 0.1 2.5e-20 72.3 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|313126444|ref|YP_004036714.1| - 5.6e-18 64.7 0.0 7.2e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|313126444|ref|YP_004036714.1| - 7.8e-12 45.4 0.2 1.2e-11 44.8 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|313126444|ref|YP_004036714.1| - 3.9e-11 42.3 2.0 5.5e-10 38.6 1.3 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|313126444|ref|YP_004036714.1| - 1.9e-09 36.8 0.0 2.1e-08 33.4 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313126444|ref|YP_004036714.1| - 2.1e-08 34.3 2.7 3.4e-07 30.4 1.9 2.3 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|313126444|ref|YP_004036714.1| - 6.9e-06 25.8 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|313126444|ref|YP_004036714.1| - 2.6e-05 24.0 0.1 7.5e-05 22.5 0.1 1.8 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|313126444|ref|YP_004036714.1| - 0.00032 19.8 0.0 0.00045 19.3 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|313126444|ref|YP_004036714.1| - 0.00084 18.6 0.1 0.024 13.8 0.1 2.6 2 1 0 2 2 2 1 NmrA-like family AlaDh_PNT_C PF01262.16 gi|313126444|ref|YP_004036714.1| - 0.023 14.2 0.1 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.16 gi|313126445|ref|YP_004036715.1| - 6e-46 156.7 0.2 9e-45 152.9 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313126445|ref|YP_004036715.1| - 3e-19 68.7 0.1 8.9e-17 60.6 0.1 2.2 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|313126445|ref|YP_004036715.1| - 2.2e-15 56.3 0.0 1.1e-06 27.7 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313126445|ref|YP_004036715.1| - 9e-10 38.8 0.1 2.8e-09 37.2 0.0 1.8 2 0 0 2 2 2 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|313126445|ref|YP_004036715.1| - 1.2e-08 34.1 0.3 1.6e-06 27.2 0.2 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|313126445|ref|YP_004036715.1| - 7.7e-07 29.1 0.4 1.7e-06 28.0 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|313126445|ref|YP_004036715.1| - 2.8e-06 27.1 0.1 1.3e-05 25.0 0.0 2.1 3 0 0 3 3 3 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|313126445|ref|YP_004036715.1| - 0.0002 20.7 0.1 0.00038 19.8 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|313126445|ref|YP_004036715.1| - 0.0003 20.7 0.2 0.0006 19.7 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|313126445|ref|YP_004036715.1| - 0.0016 18.1 0.2 0.0085 15.7 0.1 2.2 2 1 0 2 2 2 1 KR domain RmlD_sub_bind PF04321.12 gi|313126445|ref|YP_004036715.1| - 0.015 14.1 0.6 0.036 12.9 0.1 1.8 2 0 0 2 2 2 0 RmlD substrate binding domain Saccharop_dh PF03435.13 gi|313126445|ref|YP_004036715.1| - 0.022 13.7 0.1 0.032 13.2 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|313126445|ref|YP_004036715.1| - 0.042 13.4 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain zf-NADH-PPase PF09297.6 gi|313126445|ref|YP_004036715.1| - 0.058 12.9 1.0 0.33 10.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Glyco_transf_4 PF13439.1 gi|313126445|ref|YP_004036715.1| - 0.078 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Epimerase PF01370.16 gi|313126446|ref|YP_004036716.1| - 1.6e-48 165.1 0.0 2e-48 164.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313126446|ref|YP_004036716.1| - 1.3e-15 57.0 0.0 1.6e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313126446|ref|YP_004036716.1| - 1.4e-14 53.4 0.0 1.7e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|313126446|ref|YP_004036716.1| - 5.7e-13 48.3 0.8 1e-07 31.1 0.0 2.1 1 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313126446|ref|YP_004036716.1| - 2.2e-08 33.3 0.0 0.00042 19.3 0.0 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313126446|ref|YP_004036716.1| - 1.4e-07 31.6 0.0 2.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|313126446|ref|YP_004036716.1| - 8.1e-05 22.5 0.0 0.022 14.7 0.0 2.3 2 0 0 2 2 2 2 short chain dehydrogenase Abhydrolase_6 PF12697.2 gi|313126446|ref|YP_004036716.1| - 0.0021 17.9 0.2 0.0028 17.5 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|313126446|ref|YP_004036716.1| - 0.0087 15.8 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase NmrA PF05368.8 gi|313126446|ref|YP_004036716.1| - 0.015 14.5 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 2 0 NmrA-like family KR PF08659.5 gi|313126446|ref|YP_004036716.1| - 0.041 13.5 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 KR domain NTP_transferase PF00483.18 gi|313126447|ref|YP_004036717.1| - 8.4e-37 126.7 0.0 1e-36 126.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313126447|ref|YP_004036717.1| - 1e-14 54.9 0.0 1.3e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|313126447|ref|YP_004036717.1| - 6.1e-07 29.1 0.1 1.1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.19 gi|313126447|ref|YP_004036717.1| - 0.0051 16.2 5.8 1.2 8.8 0.4 3.6 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Glycos_transf_2 PF00535.21 gi|313126447|ref|YP_004036717.1| - 0.033 13.8 0.0 0.26 10.9 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase family 2 Hexapep_2 PF14602.1 gi|313126447|ref|YP_004036717.1| - 0.25 10.9 1.6 3.6 7.2 0.2 3.0 1 1 2 3 3 3 0 Hexapeptide repeat of succinyl-transferase UPF0104 PF03706.8 gi|313126448|ref|YP_004036718.1| - 2.6e-46 158.2 35.4 3.3e-46 157.9 24.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|313126448|ref|YP_004036718.1| - 2.9e-28 98.6 0.0 4.2e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313126448|ref|YP_004036718.1| - 3.9e-11 43.1 0.0 6.7e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 BacteriocIIc_cy PF12173.3 gi|313126448|ref|YP_004036718.1| - 2.6 8.1 13.3 7.7 6.6 0.4 4.2 2 2 2 4 4 4 0 Bacteriocin class IIc cyclic gassericin A-like CcmD PF04995.9 gi|313126448|ref|YP_004036718.1| - 7 6.4 9.4 0.13 11.9 0.5 2.5 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Glycos_transf_2 PF00535.21 gi|313126449|ref|YP_004036719.1| - 8.4e-18 64.6 0.0 1.1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313126449|ref|YP_004036719.1| - 1.3e-07 31.6 0.0 1.4e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|313126449|ref|YP_004036719.1| - 0.00051 20.3 0.0 0.00093 19.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|313126449|ref|YP_004036719.1| - 0.0058 16.7 0.0 0.0077 16.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NAD_binding_5 PF07994.7 gi|313126449|ref|YP_004036719.1| - 0.16 11.4 0.3 0.23 10.8 0.2 1.2 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase DUF4438 PF14505.1 gi|313126450|ref|YP_004036720.1| - 0.036 12.8 0.0 0.053 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) Arylsulfotran_2 PF14269.1 gi|313126451|ref|YP_004036721.1| - 8.5e-12 44.8 0.3 7.8e-10 38.3 0.1 2.7 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|313126451|ref|YP_004036721.1| - 6e-10 38.2 2.0 9.5e-09 34.2 0.2 2.8 1 1 2 3 3 3 1 Arylsulfotransferase (ASST) PQQ_2 PF13360.1 gi|313126451|ref|YP_004036721.1| - 3.2e-07 30.0 0.5 0.00011 21.7 0.3 2.5 1 1 0 1 1 1 1 PQQ-like domain PQQ PF01011.16 gi|313126451|ref|YP_004036721.1| - 7.4e-06 25.2 0.3 0.5 9.9 0.0 3.6 3 0 0 3 3 3 2 PQQ enzyme repeat NHL PF01436.16 gi|313126451|ref|YP_004036721.1| - 0.015 15.2 0.2 0.33 10.9 0.0 2.8 2 0 0 2 2 2 0 NHL repeat Methyltransf_21 PF05050.7 gi|313126452|ref|YP_004036722.1| - 1.9e-25 89.7 0.0 2.4e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|313126452|ref|YP_004036722.1| - 0.00019 21.0 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|313126452|ref|YP_004036722.1| - 0.0004 20.9 0.1 0.00081 19.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|313126452|ref|YP_004036722.1| - 0.0011 18.1 0.0 0.0021 17.2 0.0 1.3 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein MTS PF05175.9 gi|313126452|ref|YP_004036722.1| - 0.0023 17.3 0.0 0.0034 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DUF2029 PF09594.5 gi|313126453|ref|YP_004036723.1| - 1.1e-13 51.2 29.2 2.4e-13 50.1 20.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2029) DUF3413 PF11893.3 gi|313126453|ref|YP_004036723.1| - 1.6 7.5 6.6 0.14 11.0 1.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) DUF2029 PF09594.5 gi|313126454|ref|YP_004036724.1| - 1.7e-18 67.0 24.1 1.7e-18 67.0 16.7 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF2029) Glyco_tranf_2_2 PF10111.4 gi|313126455|ref|YP_004036725.1| - 2.5e-08 33.3 0.0 0.00089 18.4 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|313126455|ref|YP_004036725.1| - 9.7e-07 28.8 2.0 0.003 17.3 0.1 2.9 1 1 3 4 4 4 2 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|313126455|ref|YP_004036725.1| - 1.3e-06 28.1 0.0 3.4e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|313126455|ref|YP_004036725.1| - 2.9e-06 27.1 1.7 1e-05 25.3 0.9 1.9 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|313126455|ref|YP_004036725.1| - 0.00099 18.4 0.0 0.23 10.7 0.0 2.2 1 1 1 2 2 2 2 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|313126455|ref|YP_004036725.1| - 0.002 17.5 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.15 gi|313126456|ref|YP_004036726.1| - 3e-38 130.9 0.0 4.7e-38 130.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313126456|ref|YP_004036726.1| - 2.1e-28 99.5 11.4 7.4e-28 97.6 5.6 2.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|313126456|ref|YP_004036726.1| - 1.1e-19 70.8 0.5 8.8e-19 67.8 0.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|313126456|ref|YP_004036726.1| - 4.6e-18 65.6 0.1 1.1e-17 64.4 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|313126456|ref|YP_004036726.1| - 4.9e-07 29.6 0.0 1.1e-06 28.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|313126456|ref|YP_004036726.1| - 0.00016 21.9 0.1 0.00044 20.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|313126456|ref|YP_004036726.1| - 0.00052 19.5 0.4 0.0063 16.0 0.3 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain DUF3492 PF11997.3 gi|313126456|ref|YP_004036726.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3492) Glycos_transf_1 PF00534.15 gi|313126457|ref|YP_004036727.1| - 3.8e-37 127.3 0.0 5.4e-37 126.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313126457|ref|YP_004036727.1| - 1.2e-15 57.8 0.0 3.3e-15 56.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|313126457|ref|YP_004036727.1| - 7.3e-14 51.8 0.0 2.1e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313126457|ref|YP_004036727.1| - 6.7e-12 45.8 4.7 1.2e-11 45.0 3.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|313126457|ref|YP_004036727.1| - 3.3e-10 39.9 0.6 5.4e-10 39.2 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.15 gi|313126457|ref|YP_004036727.1| - 0.0017 18.1 0.1 0.0031 17.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.1 gi|313126457|ref|YP_004036727.1| - 0.0033 17.2 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Sulfatase PF00884.18 gi|313126458|ref|YP_004036728.1| - 2e-42 145.4 0.1 2.7e-42 145.0 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313126458|ref|YP_004036728.1| - 3.1e-09 36.6 0.2 1.9e-06 27.4 0.0 2.6 3 0 0 3 3 3 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|313126458|ref|YP_004036728.1| - 0.0015 17.0 0.0 0.0025 16.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|313126458|ref|YP_004036728.1| - 0.0025 16.7 0.0 0.0038 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Sulfatase_C PF14707.1 gi|313126458|ref|YP_004036728.1| - 0.012 15.9 0.9 0.029 14.6 0.2 1.9 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase Metalloenzyme PF01676.13 gi|313126458|ref|YP_004036728.1| - 0.075 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily Sulfatase PF00884.18 gi|313126459|ref|YP_004036729.1| - 7.5e-21 74.6 0.1 1e-20 74.1 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Sulfatase PF00884.18 gi|313126460|ref|YP_004036730.1| - 0.012 14.8 0.0 0.021 14.0 0.0 1.4 1 0 0 1 1 1 0 Sulfatase Sulfatase_C PF14707.1 gi|313126460|ref|YP_004036730.1| - 0.066 13.5 0.1 0.085 13.1 0.1 1.3 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase HTH_16 PF12645.2 gi|313126460|ref|YP_004036730.1| - 0.077 12.9 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Polysacc_synt_C PF14667.1 gi|313126461|ref|YP_004036731.1| - 3.3e-14 52.8 14.6 3.3e-14 52.8 10.1 4.1 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|313126461|ref|YP_004036731.1| - 5.8e-11 42.3 23.6 5.8e-11 42.3 16.3 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|313126461|ref|YP_004036731.1| - 3.9e-05 23.0 15.1 3.9e-05 23.0 10.5 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MrpF_PhaF PF04066.8 gi|313126461|ref|YP_004036731.1| - 0.0077 16.4 0.6 0.0077 16.4 0.4 3.6 3 0 0 3 3 3 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Glyco_trans_4_4 PF13579.1 gi|313126462|ref|YP_004036732.1| - 2.3e-28 99.3 10.3 2.3e-28 99.3 7.2 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|313126462|ref|YP_004036732.1| - 4.4e-26 91.3 0.0 7.7e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313126462|ref|YP_004036732.1| - 2.4e-24 86.0 0.6 4e-24 85.3 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|313126462|ref|YP_004036732.1| - 7e-19 68.3 0.3 1.9e-17 63.7 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|313126462|ref|YP_004036732.1| - 2.3e-08 33.9 0.0 3.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|313126462|ref|YP_004036732.1| - 1.4e-05 24.7 0.6 0.0028 17.2 0.0 2.9 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_3 PF12000.3 gi|313126462|ref|YP_004036732.1| - 0.0078 15.8 0.1 0.24 10.9 0.0 2.2 1 1 0 2 2 2 1 Gkycosyl transferase family 4 group NAD_binding_10 PF13460.1 gi|313126462|ref|YP_004036732.1| - 0.028 14.4 0.6 14 5.6 0.0 3.1 3 0 0 3 3 3 0 NADH(P)-binding Glyco_trans_1_2 PF13524.1 gi|313126462|ref|YP_004036732.1| - 0.12 12.6 0.0 0.44 10.8 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glyco_tranf_2_3 PF13641.1 gi|313126463|ref|YP_004036733.1| - 1.1e-22 80.9 0.1 2.3e-22 79.9 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|313126463|ref|YP_004036733.1| - 2.8e-17 62.8 1.5 6.5e-17 61.7 0.3 1.8 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|313126463|ref|YP_004036733.1| - 3.7e-16 59.4 0.0 7e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|313126463|ref|YP_004036733.1| - 3.2e-11 42.8 0.0 6e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Anp1 PF03452.9 gi|313126463|ref|YP_004036733.1| - 0.081 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Anp1 Glycos_transf_2 PF00535.21 gi|313126464|ref|YP_004036734.1| - 9.5e-15 54.6 0.0 1.5e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313126464|ref|YP_004036734.1| - 4.3e-09 36.5 0.1 7e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|313126464|ref|YP_004036734.1| - 0.00015 21.9 0.0 0.00028 21.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|313126464|ref|YP_004036734.1| - 0.026 14.6 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain DUF2795 PF11387.3 gi|313126465|ref|YP_004036735.1| - 0.011 15.5 0.0 6.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) RHH_1 PF01402.16 gi|313126466|ref|YP_004036736.1| - 0.002 17.9 0.2 0.0042 16.9 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|313126466|ref|YP_004036736.1| - 0.0075 16.0 0.4 0.0088 15.8 0.2 1.2 1 1 0 1 1 1 1 Gas vesicle protein K CobS_N PF12556.3 gi|313126467|ref|YP_004036737.1| - 0.033 13.5 0.0 0.089 12.2 0.0 1.7 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal DUF4336 PF14234.1 gi|313126468|ref|YP_004036738.1| - 0.092 11.9 0.0 0.42 9.7 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4336) Glyoxalase_2 PF12681.2 gi|313126469|ref|YP_004036739.1| - 3.4e-19 69.4 1.5 3.9e-09 37.0 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|313126469|ref|YP_004036739.1| - 3.5e-06 27.0 1.3 0.0016 18.4 0.1 3.1 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313126469|ref|YP_004036739.1| - 0.00011 22.1 0.4 0.12 12.2 0.0 3.1 2 1 0 3 3 3 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313126469|ref|YP_004036739.1| - 0.00014 21.8 0.0 0.092 12.7 0.0 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HMGL-like PF00682.14 gi|313126471|ref|YP_004036741.1| - 8.2e-59 199.1 9.9 1.5e-58 198.2 6.9 1.4 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|313126471|ref|YP_004036741.1| - 0.024 13.9 2.2 0.042 13.1 0.8 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|313126471|ref|YP_004036741.1| - 0.08 13.1 0.5 0.52 10.4 0.0 2.5 2 1 2 4 4 4 0 Radical SAM superfamily TPP_enzyme_C PF02775.16 gi|313126473|ref|YP_004036743.1| - 3.4e-52 176.0 1.5 4.6e-52 175.6 0.0 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|313126473|ref|YP_004036743.1| - 1.3e-49 168.0 0.7 1.1e-48 164.9 0.4 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|313126473|ref|YP_004036743.1| - 5.4e-43 146.0 0.2 2.4e-42 143.9 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|313126473|ref|YP_004036743.1| - 0.0045 16.5 0.0 0.0073 15.8 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.4 gi|313126474|ref|YP_004036744.1| - 3.1e-21 74.8 0.1 5.2e-21 74.1 0.0 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|313126474|ref|YP_004036744.1| - 3.2e-17 62.0 0.0 1.2e-16 60.2 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|313126474|ref|YP_004036744.1| - 4.2e-10 38.9 0.9 8.8e-10 37.8 0.0 2.0 3 0 0 3 3 3 1 ACT domain ACT_6 PF13740.1 gi|313126474|ref|YP_004036744.1| - 0.0011 18.6 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|313126474|ref|YP_004036744.1| - 0.0023 18.2 0.0 0.0044 17.3 0.0 1.4 1 0 0 1 1 1 1 ACT domain IlvN PF07991.7 gi|313126475|ref|YP_004036745.1| - 3.1e-70 234.8 0.1 4.1e-70 234.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|313126475|ref|YP_004036745.1| - 7.3e-56 188.1 0.0 1e-55 187.6 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|313126475|ref|YP_004036745.1| - 1.5e-09 38.1 0.1 2.9e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|313126475|ref|YP_004036745.1| - 4.2e-08 32.5 0.0 7.5e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|313126475|ref|YP_004036745.1| - 2.7e-06 27.3 0.0 4.9e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|313126475|ref|YP_004036745.1| - 0.0015 17.9 0.0 0.0027 17.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|313126475|ref|YP_004036745.1| - 0.0058 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|313126475|ref|YP_004036745.1| - 0.0065 16.2 0.6 0.16 11.6 0.4 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|313126475|ref|YP_004036745.1| - 0.013 15.6 1.2 0.12 12.5 0.3 2.4 1 1 1 2 2 2 0 CoA binding domain GFO_IDH_MocA PF01408.17 gi|313126475|ref|YP_004036745.1| - 0.015 15.7 0.2 0.029 14.8 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|313126475|ref|YP_004036745.1| - 0.024 14.9 0.3 0.25 11.6 0.1 2.5 3 0 0 3 3 3 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|313126475|ref|YP_004036745.1| - 0.024 14.2 0.9 0.069 12.8 0.4 1.8 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Mur_ligase PF01225.20 gi|313126475|ref|YP_004036745.1| - 0.033 14.2 0.4 0.072 13.1 0.3 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Rossmann-like PF10727.4 gi|313126475|ref|YP_004036745.1| - 0.11 12.1 0.2 0.2 11.3 0.2 1.3 1 0 0 1 1 1 0 Rossmann-like domain Aconitase PF00330.15 gi|313126477|ref|YP_004036747.1| - 2.1e-146 488.0 0.0 2.4e-146 487.8 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|313126477|ref|YP_004036747.1| - 0.0029 16.2 0.0 0.0045 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|313126478|ref|YP_004036748.1| - 1.1e-20 74.0 0.0 1.6e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.15 gi|313126479|ref|YP_004036749.1| - 8.4e-86 288.0 0.0 9.5e-86 287.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|313126479|ref|YP_004036749.1| - 0.056 12.6 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA DeoRC PF00455.17 gi|313126480|ref|YP_004036750.1| - 2.5e-51 173.5 0.2 3.3e-51 173.1 0.1 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|313126480|ref|YP_004036750.1| - 1.3e-15 56.6 0.2 2.3e-15 55.8 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|313126480|ref|YP_004036750.1| - 5.1e-07 29.4 0.1 1.2e-06 28.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313126480|ref|YP_004036750.1| - 7.1e-07 28.7 0.1 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313126480|ref|YP_004036750.1| - 1.9e-06 27.4 0.3 3.8e-06 26.4 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313126480|ref|YP_004036750.1| - 3.6e-06 26.2 0.6 2.9e-05 23.3 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313126480|ref|YP_004036750.1| - 6.8e-06 25.6 0.0 1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|313126480|ref|YP_004036750.1| - 1.2e-05 24.5 0.1 2.7e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|313126480|ref|YP_004036750.1| - 7.3e-05 22.4 0.0 0.00016 21.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313126480|ref|YP_004036750.1| - 0.00013 21.5 0.0 0.00025 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313126480|ref|YP_004036750.1| - 0.00024 20.6 0.1 0.00044 19.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|313126480|ref|YP_004036750.1| - 0.00062 19.3 0.1 0.0019 17.8 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|313126480|ref|YP_004036750.1| - 0.00092 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|313126480|ref|YP_004036750.1| - 0.0035 17.2 0.0 0.01 15.7 0.0 1.8 1 0 0 1 1 1 1 Transposase HTH_27 PF13463.1 gi|313126480|ref|YP_004036750.1| - 0.0045 17.2 0.0 0.0093 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|313126480|ref|YP_004036750.1| - 0.006 15.8 1.4 0.075 12.3 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.1 gi|313126480|ref|YP_004036750.1| - 0.0064 16.6 0.0 0.021 14.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|313126480|ref|YP_004036750.1| - 0.0065 16.4 0.2 0.018 15.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|313126480|ref|YP_004036750.1| - 0.0079 15.8 0.3 0.029 14.1 0.0 2.0 3 0 0 3 3 2 1 Ribonuclease R winged-helix domain HTH_38 PF13936.1 gi|313126480|ref|YP_004036750.1| - 0.0095 15.4 0.4 0.022 14.3 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|313126480|ref|YP_004036750.1| - 0.041 14.3 0.1 0.14 12.5 0.0 1.9 2 1 0 2 2 2 0 Replication protein A C terminal DUF2250 PF10007.4 gi|313126480|ref|YP_004036750.1| - 0.042 13.7 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.1 gi|313126480|ref|YP_004036750.1| - 0.053 13.0 2.1 0.13 11.8 0.2 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RP-C PF03428.8 gi|313126480|ref|YP_004036750.1| - 0.072 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_CodY PF08222.6 gi|313126480|ref|YP_004036750.1| - 0.092 12.0 0.1 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF4423 PF14394.1 gi|313126480|ref|YP_004036750.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|313126480|ref|YP_004036750.1| - 0.11 12.6 0.1 0.72 10.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix Rrf2 PF02082.15 gi|313126480|ref|YP_004036750.1| - 0.13 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|313126480|ref|YP_004036750.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.18 gi|313126480|ref|YP_004036750.1| - 0.18 11.4 0.6 9 6.0 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|313126480|ref|YP_004036750.1| - 0.28 10.6 1.3 14 5.2 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 F_bP_aldolase PF01116.15 gi|313126481|ref|YP_004036751.1| - 2.8e-84 282.6 0.0 3.3e-84 282.3 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II TIM-br_sig_trns PF09370.5 gi|313126481|ref|YP_004036751.1| - 0.097 11.7 0.0 0.34 9.9 0.0 1.7 1 1 1 2 2 2 0 TIM-barrel signal transduction protein RHH_1 PF01402.16 gi|313126482|ref|YP_004036752.1| - 0.00034 20.3 0.4 0.0063 16.3 0.1 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family FlaC_arch PF05377.6 gi|313126482|ref|YP_004036752.1| - 0.14 12.0 0.4 0.16 11.8 0.2 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF937 PF06078.6 gi|313126483|ref|YP_004036753.1| - 0.015 15.5 2.9 0.019 15.1 2.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF937) Hydrolase_3 PF08282.7 gi|313126484|ref|YP_004036754.1| - 5.9e-11 42.4 0.0 0.00016 21.3 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|313126484|ref|YP_004036754.1| - 2.1e-05 24.7 0.1 0.00024 21.3 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase CutC PF03932.9 gi|313126484|ref|YP_004036754.1| - 0.13 11.4 0.0 0.29 10.3 0.0 1.5 2 0 0 2 2 2 0 CutC family MR_MLE_C PF13378.1 gi|313126485|ref|YP_004036755.1| - 1.3e-28 99.1 0.0 3.5e-28 97.7 0.0 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|313126485|ref|YP_004036755.1| - 4e-14 52.6 0.1 1.4e-13 50.8 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|313126485|ref|YP_004036755.1| - 1.7e-12 47.6 1.1 1.3e-10 41.6 0.1 3.6 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|313126485|ref|YP_004036755.1| - 0.019 14.6 0.1 0.033 13.8 0.1 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein MOSC PF03473.12 gi|313126486|ref|YP_004036756.1| - 2.3e-13 49.7 0.1 2.9e-13 49.4 0.1 1.1 1 0 0 1 1 1 1 MOSC domain Rubrerythrin PF02915.12 gi|313126487|ref|YP_004036757.1| - 0.00087 19.6 1.3 0.0019 18.5 0.2 2.0 2 1 0 2 2 2 1 Rubrerythrin MCPsignal PF00015.16 gi|313126488|ref|YP_004036758.1| - 1.5e-48 165.1 56.1 4.6e-47 160.3 26.6 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|313126488|ref|YP_004036758.1| - 3.1e-27 95.1 0.5 1.2e-26 93.2 0.0 2.3 2 1 0 2 2 2 1 Protoglobin Laminin_II PF06009.7 gi|313126488|ref|YP_004036758.1| - 0.0077 15.9 40.5 0.77 9.5 2.6 4.8 2 2 3 5 5 5 4 Laminin Domain II Spc7 PF08317.6 gi|313126488|ref|YP_004036758.1| - 0.023 13.3 26.3 0.12 11.0 8.1 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein HisKA_3 PF07730.8 gi|313126488|ref|YP_004036758.1| - 0.32 11.3 28.5 0.77 10.1 0.2 5.5 3 2 2 5 5 5 0 Histidine kinase Bac_globin PF01152.16 gi|313126488|ref|YP_004036758.1| - 0.64 10.0 3.5 0.75 9.8 0.0 2.9 3 1 1 4 4 4 0 Bacterial-like globin DUF948 PF06103.6 gi|313126488|ref|YP_004036758.1| - 0.74 9.7 27.4 3.5 7.5 1.1 4.9 2 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) TMP_2 PF06791.8 gi|313126488|ref|YP_004036758.1| - 0.89 9.1 29.6 0.082 12.5 8.6 3.0 1 1 0 2 2 2 0 Prophage tail length tape measure protein DUF677 PF05055.7 gi|313126488|ref|YP_004036758.1| - 1.6 7.3 29.2 0.97 8.0 6.4 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF677) DUF1664 PF07889.7 gi|313126488|ref|YP_004036758.1| - 1.9 8.2 26.3 3.6 7.4 1.1 4.2 2 2 1 4 4 4 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|313126488|ref|YP_004036758.1| - 3.3 7.9 30.5 0.78 9.9 3.5 4.8 1 1 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.7 gi|313126488|ref|YP_004036758.1| - 6.9 6.9 24.3 2.3 8.5 1.1 5.9 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Sec5 PF15469.1 gi|313126488|ref|YP_004036758.1| - 9 5.9 15.3 2.7 7.6 4.5 3.6 2 1 1 3 3 3 0 Exocyst complex component Sec5 Lactamase_B PF00753.22 gi|313126489|ref|YP_004036759.1| - 2.4e-18 66.4 3.7 3.7e-18 65.8 2.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|313126489|ref|YP_004036759.1| - 2.6e-11 43.8 0.0 7.9e-11 42.3 0.0 1.8 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|313126489|ref|YP_004036759.1| - 0.0026 17.3 0.3 0.0052 16.3 0.2 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313126489|ref|YP_004036759.1| - 0.0064 16.2 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Fer2 PF00111.22 gi|313126490|ref|YP_004036760.1| - 1.3e-11 44.0 2.6 1.7e-11 43.7 1.8 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|313126490|ref|YP_004036760.1| - 0.019 14.7 0.1 0.02 14.7 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|313126490|ref|YP_004036760.1| - 0.089 12.3 0.9 0.18 11.2 0.1 1.9 3 0 0 3 3 3 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DUF839 PF05787.8 gi|313126491|ref|YP_004036761.1| - 3.2e-24 85.7 16.5 7.1e-21 74.7 6.4 3.4 2 1 1 3 3 3 3 Bacterial protein of unknown function (DUF839) TAT_signal PF10518.4 gi|313126491|ref|YP_004036761.1| - 0.55 10.3 5.5 1.3 9.2 3.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Usp PF00582.21 gi|313126493|ref|YP_004036763.1| - 9.7e-40 135.9 0.7 1.1e-39 135.8 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.17 gi|313126493|ref|YP_004036763.1| - 0.011 15.1 0.1 0.036 13.5 0.0 1.7 1 1 0 2 2 2 0 SRP54-type protein, GTPase domain PMT_2 PF13231.1 gi|313126495|ref|YP_004036765.1| - 2.4e-13 50.3 4.8 2.4e-13 50.3 3.3 3.5 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|313126495|ref|YP_004036765.1| - 3.7e-06 26.4 5.7 3.7e-06 26.4 4.0 2.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Gate PF07670.9 gi|313126495|ref|YP_004036765.1| - 2.8 7.8 7.1 1.6 8.6 0.9 3.0 2 1 1 3 3 3 0 Nucleoside recognition DUF4157 PF13699.1 gi|313126497|ref|YP_004036767.1| - 9.7e-30 102.5 1.2 2.4e-29 101.3 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) HTH_35 PF13693.1 gi|313126497|ref|YP_004036767.1| - 0.039 13.7 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TFIIB PF00382.14 gi|313126498|ref|YP_004036768.1| - 5.1e-46 154.3 1.7 1.2e-23 82.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313126498|ref|YP_004036768.1| - 7.2e-19 66.8 1.1 1.2e-18 66.1 0.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|313126498|ref|YP_004036768.1| - 0.0033 16.8 0.6 0.007 15.7 0.4 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain Ribosomal_S27e PF01667.12 gi|313126498|ref|YP_004036768.1| - 0.0056 16.1 0.2 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 HTH_23 PF13384.1 gi|313126498|ref|YP_004036768.1| - 0.01 15.4 0.3 0.64 9.7 0.1 3.3 3 0 0 3 3 3 0 Homeodomain-like domain RRN7 PF11781.3 gi|313126498|ref|YP_004036768.1| - 0.012 15.1 0.3 0.023 14.2 0.2 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Sigma70_r4 PF04545.11 gi|313126498|ref|YP_004036768.1| - 0.012 14.9 0.8 0.3 10.4 0.0 3.4 3 1 0 3 3 3 0 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|313126498|ref|YP_004036768.1| - 0.018 14.7 0.3 0.051 13.2 0.2 1.8 2 0 0 2 2 1 0 Putative transposase DNA-binding domain Cyclin_N PF00134.18 gi|313126498|ref|YP_004036768.1| - 0.068 12.7 0.0 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 Cyclin, N-terminal domain DZR PF12773.2 gi|313126498|ref|YP_004036768.1| - 0.076 12.8 0.5 0.18 11.6 0.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon HTH_3 PF01381.17 gi|313126498|ref|YP_004036768.1| - 0.086 12.6 0.1 6.1 6.7 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix Cyclin_C PF02984.14 gi|313126498|ref|YP_004036768.1| - 0.1 12.5 0.0 0.58 10.1 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain Trm112p PF03966.11 gi|313126498|ref|YP_004036768.1| - 0.12 12.7 0.4 0.38 11.1 0.2 1.9 1 0 0 1 1 1 0 Trm112p-like protein Nudix_N_2 PF14803.1 gi|313126498|ref|YP_004036768.1| - 0.17 11.6 1.9 3.4 7.4 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.7 gi|313126498|ref|YP_004036768.1| - 0.29 10.9 2.3 0.61 9.9 1.6 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|313126498|ref|YP_004036768.1| - 2.3 8.2 4.5 5.5 7.0 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain LTD PF00932.14 gi|313126499|ref|YP_004036769.1| - 2.9e-22 78.9 4.2 8.2e-22 77.4 2.9 1.8 1 0 0 1 1 1 1 Lamin Tail Domain SNase PF00565.12 gi|313126499|ref|YP_004036769.1| - 3.6e-21 75.4 0.0 5.1e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue NlpE PF04170.7 gi|313126499|ref|YP_004036769.1| - 0.024 14.9 0.2 7.3 7.0 0.0 2.5 2 0 0 2 2 2 0 NlpE N-terminal domain Lipase_GDSL_2 PF13472.1 gi|313126500|ref|YP_004036770.1| - 0.017 15.2 0.1 0.024 14.7 0.1 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family CAP59_mtransfer PF11735.3 gi|313126500|ref|YP_004036770.1| - 0.02 14.1 0.0 0.058 12.6 0.0 1.6 2 0 0 2 2 2 0 Cryptococcal mannosyltransferase 1 PaRep2b PF07775.6 gi|313126500|ref|YP_004036770.1| - 0.069 11.3 0.0 0.094 10.9 0.0 1.2 1 0 0 1 1 1 0 PaRep2b protein Methyltransf_26 PF13659.1 gi|313126501|ref|YP_004036771.1| - 4.8e-15 55.6 0.4 6.7e-15 55.1 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313126501|ref|YP_004036771.1| - 2.4e-13 49.7 0.1 3.7e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|313126501|ref|YP_004036771.1| - 5.6e-12 45.6 0.0 6.6e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|313126501|ref|YP_004036771.1| - 3e-10 39.7 0.3 4.3e-10 39.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|313126501|ref|YP_004036771.1| - 4.5e-10 40.1 0.0 8e-10 39.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126501|ref|YP_004036771.1| - 6.8e-09 35.4 0.0 8.6e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|313126501|ref|YP_004036771.1| - 6.9e-08 32.0 0.0 9e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|313126501|ref|YP_004036771.1| - 5.1e-07 29.9 0.0 1.1e-06 28.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313126501|ref|YP_004036771.1| - 1.7e-06 28.4 0.0 3.4e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313126501|ref|YP_004036771.1| - 4.1e-05 22.8 0.0 6.8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|313126501|ref|YP_004036771.1| - 0.00035 20.2 0.0 0.00043 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126501|ref|YP_004036771.1| - 0.0012 18.6 0.0 0.0016 18.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|313126501|ref|YP_004036771.1| - 0.007 15.4 0.0 0.0097 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|313126501|ref|YP_004036771.1| - 0.0081 16.6 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|313126501|ref|YP_004036771.1| - 0.026 13.5 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase CMAS PF02353.15 gi|313126501|ref|YP_004036771.1| - 0.027 13.5 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|313126501|ref|YP_004036771.1| - 0.072 12.6 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF43 PF01861.11 gi|313126501|ref|YP_004036771.1| - 0.1 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 FtsJ PF01728.14 gi|313126501|ref|YP_004036771.1| - 0.1 12.5 0.1 0.15 12.0 0.1 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.14 gi|313126501|ref|YP_004036771.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Rhomboid PF01694.17 gi|313126502|ref|YP_004036772.1| - 7.9e-06 25.9 15.3 7.9e-06 25.9 10.6 3.2 3 1 0 3 3 3 1 Rhomboid family UPF0058 PF01893.11 gi|313126503|ref|YP_004036773.1| - 2.1e-33 114.2 2.2 2.3e-33 114.0 1.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF2580 PF10824.3 gi|313126503|ref|YP_004036773.1| - 0.088 13.1 0.1 0.14 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2580) RHH_1 PF01402.16 gi|313126504|ref|YP_004036774.1| - 0.021 14.7 0.1 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family IclR PF01614.13 gi|313126504|ref|YP_004036774.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator Oxidored_molyb PF00174.14 gi|313126505|ref|YP_004036775.1| - 1.2e-43 148.4 0.0 1.5e-43 148.1 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Chorismate_bind PF00425.13 gi|313126506|ref|YP_004036776.1| - 4.9e-75 252.1 0.0 6.3e-75 251.8 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|313126507|ref|YP_004036777.1| - 1.4e-32 112.5 0.0 3.4e-32 111.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|313126507|ref|YP_004036777.1| - 2.9e-10 39.9 0.0 1e-09 38.1 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GRDA PF04723.9 gi|313126507|ref|YP_004036777.1| - 0.0022 17.7 0.4 0.0049 16.5 0.0 1.7 2 0 0 2 2 2 1 Glycine reductase complex selenoprotein A DUF3809 PF12723.2 gi|313126508|ref|YP_004036778.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3809) ECH PF00378.15 gi|313126510|ref|YP_004036780.1| - 8.8e-43 146.1 0.0 8.1e-42 143.0 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family PAS_9 PF13426.1 gi|313126511|ref|YP_004036781.1| - 3.7e-40 136.5 1.5 4.4e-23 81.6 0.0 3.4 4 0 0 4 4 4 2 PAS domain PAS PF00989.19 gi|313126511|ref|YP_004036781.1| - 1.2e-23 83.0 0.1 1.1e-10 41.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|313126511|ref|YP_004036781.1| - 5.6e-23 81.0 3.0 1.1e-13 51.1 0.1 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|313126511|ref|YP_004036781.1| - 9.9e-19 67.1 0.1 8.3e-18 64.1 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313126511|ref|YP_004036781.1| - 3.7e-17 62.2 0.0 1.5e-08 34.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|313126511|ref|YP_004036781.1| - 2e-08 34.0 0.3 5.8e-08 32.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|313126511|ref|YP_004036781.1| - 5.7e-08 32.9 0.0 2.1e-07 31.0 0.0 2.1 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|313126511|ref|YP_004036781.1| - 3.7e-07 29.7 0.2 0.014 15.2 0.0 3.4 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.1 gi|313126511|ref|YP_004036781.1| - 1.7e-05 25.3 0.2 0.00047 20.6 0.0 2.9 3 0 0 3 3 3 1 GAF domain HATPase_c_3 PF13589.1 gi|313126511|ref|YP_004036781.1| - 2.3e-05 24.0 0.0 4.8e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|313126511|ref|YP_004036781.1| - 9.9e-05 22.5 0.1 0.00047 20.3 0.0 2.2 2 0 0 2 2 2 1 GAF domain FUSC PF04632.7 gi|313126511|ref|YP_004036781.1| - 0.0022 16.5 1.9 0.0034 15.9 1.3 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family UbiA PF01040.13 gi|313126512|ref|YP_004036782.1| - 6.1e-39 133.7 21.8 7.1e-39 133.5 15.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MR_MLE PF01188.16 gi|313126513|ref|YP_004036783.1| - 1.4e-14 54.3 3.9 1.4e-14 54.3 2.7 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|313126513|ref|YP_004036783.1| - 2.7e-13 49.8 2.4 2.7e-13 49.8 1.6 2.6 3 0 0 3 3 3 1 Enolase C-terminal domain-like Radical_SAM PF04055.16 gi|313126513|ref|YP_004036783.1| - 0.00018 21.7 0.0 0.013 15.6 0.0 2.3 1 1 0 1 1 1 1 Radical SAM superfamily MAAL_C PF07476.6 gi|313126513|ref|YP_004036783.1| - 0.011 14.7 0.2 0.019 13.8 0.1 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DeoC PF01791.4 gi|313126513|ref|YP_004036783.1| - 0.021 14.0 0.0 0.039 13.2 0.0 1.5 1 0 0 1 1 1 0 DeoC/LacD family aldolase ECH PF00378.15 gi|313126514|ref|YP_004036784.1| - 4.6e-50 170.0 0.1 5.7e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|313126514|ref|YP_004036784.1| - 0.00052 20.1 0.1 0.0014 18.7 0.0 1.7 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region NADHdh PF00146.16 gi|313126515|ref|YP_004036785.1| - 8.9e-78 261.4 12.1 1.1e-77 261.1 8.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase HTH_10 PF04967.7 gi|313126516|ref|YP_004036786.1| - 1.1e-16 60.0 0.2 2e-16 59.3 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|313126516|ref|YP_004036786.1| - 0.009 15.7 0.3 0.018 14.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2061 PF09834.4 gi|313126517|ref|YP_004036787.1| - 4.4e-17 61.9 1.7 5e-17 61.8 1.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) ThuA PF06283.6 gi|313126518|ref|YP_004036788.1| - 4.3e-47 160.6 0.1 4.8e-47 160.4 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation SWIM PF04434.12 gi|313126519|ref|YP_004036789.1| - 1.8e-06 27.2 0.0 2.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger TAT_signal PF10518.4 gi|313126520|ref|YP_004036790.1| - 0.04 13.9 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|313126521|ref|YP_004036791.1| - 0.068 13.2 2.6 0.27 11.3 1.8 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3735 PF12537.3 gi|313126522|ref|YP_004036792.1| - 0.4 10.7 2.2 0.49 10.4 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3735) DUF4015 PF13200.1 gi|313126523|ref|YP_004036793.1| - 0.0024 16.8 0.0 0.0034 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain Glyco_hydro_42 PF02449.10 gi|313126523|ref|YP_004036793.1| - 0.017 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Beta-galactosidase PyrI PF01948.13 gi|313126525|ref|YP_004036795.1| - 2.2e-36 123.7 0.6 2.8e-36 123.4 0.4 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|313126525|ref|YP_004036795.1| - 6.6e-19 67.0 0.2 1e-18 66.4 0.1 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|313126526|ref|YP_004036796.1| - 3.3e-44 149.9 0.0 5.8e-44 149.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|313126526|ref|YP_004036796.1| - 1.4e-35 122.4 0.0 2e-35 122.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DICT PF10069.4 gi|313126527|ref|YP_004036797.1| - 2.3e-20 72.4 0.0 3.7e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems ELFV_dehydrog PF00208.16 gi|313126528|ref|YP_004036798.1| - 1.7e-73 247.1 0.3 2.6e-73 246.6 0.2 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|313126528|ref|YP_004036798.1| - 9e-51 170.8 0.0 1.5e-50 170.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|313126528|ref|YP_004036798.1| - 0.00095 18.3 0.1 0.0019 17.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|313126528|ref|YP_004036798.1| - 0.017 14.7 0.2 0.038 13.5 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.14 gi|313126528|ref|YP_004036798.1| - 0.017 13.7 0.0 0.027 13.1 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase IlvN PF07991.7 gi|313126528|ref|YP_004036798.1| - 0.026 13.9 0.2 0.041 13.2 0.2 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|313126529|ref|YP_004036799.1| - 1.7e-74 250.5 0.0 6e-74 248.6 0.0 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|313126529|ref|YP_004036799.1| - 2.2e-50 169.5 0.0 3.5e-50 168.9 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|313126529|ref|YP_004036799.1| - 0.00046 19.3 0.0 0.00082 18.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|313126529|ref|YP_004036799.1| - 0.044 14.0 0.0 0.099 12.9 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|313126529|ref|YP_004036799.1| - 0.059 12.7 0.0 0.09 12.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|313126529|ref|YP_004036799.1| - 0.12 11.9 0.1 0.24 10.9 0.1 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HpcH_HpaI PF03328.9 gi|313126530|ref|YP_004036800.1| - 1.2e-48 164.9 0.5 1.6e-48 164.5 0.4 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|313126530|ref|YP_004036800.1| - 5.1e-10 38.6 0.0 8.5e-07 28.0 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold MaoC_dehydratas PF01575.14 gi|313126531|ref|YP_004036801.1| - 1e-22 79.7 0.2 1.3e-22 79.4 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313126531|ref|YP_004036801.1| - 3.3e-07 30.1 0.2 1.1e-06 28.4 0.1 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_3 PF13622.1 gi|313126531|ref|YP_004036801.1| - 0.055 13.2 0.0 0.061 13.0 0.0 1.0 1 0 0 1 1 1 0 Thioesterase-like superfamily bPH_2 PF03703.9 gi|313126532|ref|YP_004036802.1| - 1.5e-13 50.5 0.0 2.4e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF3811 PF11656.3 gi|313126532|ref|YP_004036802.1| - 0.039 14.0 0.4 0.066 13.2 0.3 1.3 1 0 0 1 1 1 0 YjbD family (DUF3811) Cwf_Cwc_15 PF04889.7 gi|313126532|ref|YP_004036802.1| - 2.6 7.6 13.7 3.4 7.2 9.5 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein bPH_2 PF03703.9 gi|313126533|ref|YP_004036803.1| - 3.9e-12 46.0 0.1 6.4e-12 45.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain YrhK PF14145.1 gi|313126533|ref|YP_004036803.1| - 0.12 12.0 1.4 2.5 7.8 0.2 2.2 2 0 0 2 2 2 0 YrhK-like protein IncA PF04156.9 gi|313126533|ref|YP_004036803.1| - 0.14 11.7 3.0 0.19 11.2 2.1 1.2 1 0 0 1 1 1 0 IncA protein DUF63 PF01889.12 gi|313126534|ref|YP_004036804.1| - 0.0066 16.5 0.4 0.0081 16.2 0.3 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Carboxyl_trans PF01039.17 gi|313126535|ref|YP_004036805.1| - 4.2e-130 434.3 0.0 5.7e-130 433.9 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain FBPase PF00316.15 gi|313126536|ref|YP_004036806.1| - 3.3e-62 210.1 0.0 3.8e-62 209.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|313126536|ref|YP_004036806.1| - 9.4e-05 21.8 0.1 0.00034 20.0 0.0 1.8 2 0 0 2 2 2 1 Inositol monophosphatase family SEO_C PF14577.1 gi|313126536|ref|YP_004036806.1| - 0.091 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Sieve element occlusion C-terminus HHH_5 PF14520.1 gi|313126537|ref|YP_004036807.1| - 6e-08 32.7 0.8 4.5e-05 23.5 0.2 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|313126537|ref|YP_004036807.1| - 0.043 13.7 0.0 4.6 7.2 0.0 2.3 2 0 0 2 2 2 0 Pathogenicity locus DUF4332 PF14229.1 gi|313126537|ref|YP_004036807.1| - 0.071 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) TMP-TENI PF02581.12 gi|313126537|ref|YP_004036807.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI 3HCDH_N PF02737.13 gi|313126538|ref|YP_004036808.1| - 8.1e-63 211.3 2.1 1.1e-62 210.9 1.5 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|313126538|ref|YP_004036808.1| - 1.7e-33 114.8 0.4 1.9e-32 111.4 0.0 2.4 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|313126538|ref|YP_004036808.1| - 0.004 16.9 3.5 0.0056 16.5 1.9 1.8 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|313126538|ref|YP_004036808.1| - 0.0059 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|313126538|ref|YP_004036808.1| - 0.019 15.4 1.6 0.068 13.6 0.7 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|313126538|ref|YP_004036808.1| - 0.082 12.2 0.9 0.11 11.9 0.1 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|313126538|ref|YP_004036808.1| - 0.088 12.5 0.5 0.14 11.8 0.3 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|313126538|ref|YP_004036808.1| - 0.11 12.8 0.2 0.19 12.0 0.1 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain DAZAP2 PF11029.3 gi|313126538|ref|YP_004036808.1| - 0.14 12.5 0.1 0.27 11.6 0.1 1.4 1 0 0 1 1 1 0 DAZ associated protein 2 (DAZAP2) Shikimate_DH PF01488.15 gi|313126538|ref|YP_004036808.1| - 0.26 11.3 1.9 7 6.7 1.6 2.5 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF4538 PF15061.1 gi|313126540|ref|YP_004036810.1| - 0.27 10.5 0.2 0.27 10.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) DUF2970 PF11174.3 gi|313126540|ref|YP_004036810.1| - 4.4 6.9 10.0 1.9 8.1 2.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) ABC_tran PF00005.22 gi|313126541|ref|YP_004036811.1| - 6.3e-29 101.0 0.0 1.1e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126541|ref|YP_004036811.1| - 1.5e-13 51.4 0.0 4.3e-07 30.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|313126541|ref|YP_004036811.1| - 5.6e-05 23.5 0.0 0.00046 20.6 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|313126541|ref|YP_004036811.1| - 0.0015 18.8 0.0 0.0024 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313126541|ref|YP_004036811.1| - 0.0054 16.8 0.1 0.015 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313126541|ref|YP_004036811.1| - 0.03 13.8 0.1 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|313126541|ref|YP_004036811.1| - 0.034 14.0 0.2 0.23 11.3 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|313126541|ref|YP_004036811.1| - 0.043 13.7 0.0 0.18 11.7 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|313126541|ref|YP_004036811.1| - 0.047 14.5 2.1 0.26 12.1 1.4 2.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313126541|ref|YP_004036811.1| - 0.051 13.1 0.1 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|313126541|ref|YP_004036811.1| - 0.064 12.8 1.5 1.6 8.2 0.1 2.8 3 0 0 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|313126541|ref|YP_004036811.1| - 0.079 12.3 0.0 1.3 8.4 0.0 2.4 2 1 1 3 3 3 0 AAA-like domain Zeta_toxin PF06414.7 gi|313126541|ref|YP_004036811.1| - 0.089 11.8 0.0 0.19 10.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|313126541|ref|YP_004036811.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|313126541|ref|YP_004036811.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane_2 PF12679.2 gi|313126542|ref|YP_004036812.1| - 1.7e-08 33.6 0.1 9.6e-08 31.2 0.1 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313126542|ref|YP_004036812.1| - 1.1e-07 31.2 8.0 1.1e-07 31.2 5.5 2.3 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313126543|ref|YP_004036813.1| - 1.3e-21 77.0 0.1 1.6e-21 76.7 0.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313126543|ref|YP_004036813.1| - 3.5e-14 52.3 3.5 5.2e-14 51.7 2.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313126543|ref|YP_004036813.1| - 6.4e-11 41.8 0.0 1.1e-10 41.0 0.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|313126543|ref|YP_004036813.1| - 9.8e-09 34.6 2.4 9.8e-09 34.6 1.6 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|313126543|ref|YP_004036813.1| - 0.023 13.9 0.2 0.023 13.9 0.1 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein CENP-F_leu_zip PF10473.4 gi|313126544|ref|YP_004036814.1| - 8.3e-05 22.4 3.8 0.0001 22.1 2.7 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EAP30 PF04157.11 gi|313126544|ref|YP_004036814.1| - 0.00022 20.4 2.4 0.00026 20.2 1.7 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family HR1 PF02185.11 gi|313126544|ref|YP_004036814.1| - 0.0019 17.9 2.8 0.0021 17.7 1.2 1.7 1 1 0 1 1 1 1 Hr1 repeat Atg14 PF10186.4 gi|313126544|ref|YP_004036814.1| - 0.0021 17.0 3.6 0.0023 16.9 2.5 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 CCDC155 PF14662.1 gi|313126544|ref|YP_004036814.1| - 0.0083 15.7 6.8 0.0092 15.5 4.7 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 Med9 PF07544.8 gi|313126544|ref|YP_004036814.1| - 0.0098 15.6 4.0 0.0098 15.6 2.7 1.8 2 0 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 DUF4201 PF13870.1 gi|313126544|ref|YP_004036814.1| - 0.011 15.2 2.0 0.012 15.0 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) eIF3_N PF09440.5 gi|313126544|ref|YP_004036814.1| - 0.012 15.7 1.9 0.017 15.2 1.3 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain GldM_N PF12081.3 gi|313126544|ref|YP_004036814.1| - 0.013 15.0 1.9 0.015 14.8 0.8 1.4 1 1 0 1 1 1 0 GldM N-terminal domain Rop-like PF05082.8 gi|313126544|ref|YP_004036814.1| - 0.013 14.9 3.1 0.016 14.6 0.2 2.2 1 1 1 2 2 2 0 Rop-like DegS PF05384.6 gi|313126544|ref|YP_004036814.1| - 0.014 14.5 2.2 0.016 14.4 1.5 1.2 1 0 0 1 1 1 0 Sensor protein DegS MFMR PF07777.6 gi|313126544|ref|YP_004036814.1| - 0.016 15.1 1.0 0.018 14.9 0.7 1.1 1 0 0 1 1 1 0 G-box binding protein MFMR DASH_Spc34 PF08657.5 gi|313126544|ref|YP_004036814.1| - 0.02 14.5 3.3 0.022 14.4 2.3 1.1 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF2802 PF10975.3 gi|313126544|ref|YP_004036814.1| - 0.021 14.5 7.5 0.029 14.1 4.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) Striatin PF08232.7 gi|313126544|ref|YP_004036814.1| - 0.022 15.0 5.4 0.026 14.8 3.7 1.1 1 0 0 1 1 1 0 Striatin family Spc7 PF08317.6 gi|313126544|ref|YP_004036814.1| - 0.026 13.1 2.7 0.027 13.1 1.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Cep57_CLD_2 PF14197.1 gi|313126544|ref|YP_004036814.1| - 0.027 14.3 7.9 0.048 13.6 5.5 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF972 PF06156.8 gi|313126544|ref|YP_004036814.1| - 0.028 14.7 5.4 0.038 14.3 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Nup54 PF13874.1 gi|313126544|ref|YP_004036814.1| - 0.029 14.0 1.6 0.033 13.8 1.1 1.1 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 T2SM PF04612.7 gi|313126544|ref|YP_004036814.1| - 0.03 14.1 6.5 0.035 13.9 4.3 1.3 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein M V_ATPase_I PF01496.14 gi|313126544|ref|YP_004036814.1| - 0.055 11.3 2.2 0.063 11.1 1.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HAUS5 PF14817.1 gi|313126544|ref|YP_004036814.1| - 0.058 11.9 7.7 0.07 11.6 5.4 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 RmuC PF02646.11 gi|313126544|ref|YP_004036814.1| - 0.059 12.1 3.1 0.092 11.5 1.9 1.5 1 1 1 2 2 2 0 RmuC family Laminin_II PF06009.7 gi|313126544|ref|YP_004036814.1| - 0.078 12.7 4.4 0.048 13.4 0.8 1.9 1 1 1 2 2 2 0 Laminin Domain II FbpA PF05833.6 gi|313126544|ref|YP_004036814.1| - 0.096 11.2 3.7 0.11 11.0 2.6 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) GAS PF13851.1 gi|313126544|ref|YP_004036814.1| - 0.096 11.8 5.2 0.1 11.7 2.9 1.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.5 gi|313126544|ref|YP_004036814.1| - 0.13 12.3 0.5 0.15 12.2 0.3 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family SPX PF03105.14 gi|313126544|ref|YP_004036814.1| - 0.14 11.9 4.4 0.15 11.7 3.0 1.1 1 0 0 1 1 1 0 SPX domain DUF2960 PF11173.3 gi|313126544|ref|YP_004036814.1| - 0.14 12.4 0.6 0.22 11.8 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2960) TPR_MLP1_2 PF07926.7 gi|313126544|ref|YP_004036814.1| - 0.14 11.8 9.8 0.31 10.7 6.8 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Vac_Fusion PF02346.11 gi|313126544|ref|YP_004036814.1| - 0.14 11.5 0.6 0.2 11.1 0.4 1.3 1 0 0 1 1 1 0 Chordopoxvirus fusion protein Mnd1 PF03962.10 gi|313126544|ref|YP_004036814.1| - 0.15 11.6 7.1 0.19 11.4 4.9 1.2 1 0 0 1 1 1 0 Mnd1 family Cwf_Cwc_15 PF04889.7 gi|313126544|ref|YP_004036814.1| - 0.16 11.6 11.8 0.19 11.4 8.2 1.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF148 PF02520.12 gi|313126544|ref|YP_004036814.1| - 0.16 11.7 3.4 0.25 11.1 2.1 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF148 TBPIP PF07106.8 gi|313126544|ref|YP_004036814.1| - 0.17 11.4 4.0 0.19 11.2 2.8 1.3 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prominin PF05478.6 gi|313126544|ref|YP_004036814.1| - 0.19 9.2 0.2 0.19 9.2 0.2 1.0 1 0 0 1 1 1 0 Prominin DUF3373 PF11853.3 gi|313126544|ref|YP_004036814.1| - 0.23 9.9 3.0 0.29 9.6 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) FUSC PF04632.7 gi|313126544|ref|YP_004036814.1| - 0.23 9.8 10.4 0.27 9.6 7.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family CENP-Q PF13094.1 gi|313126544|ref|YP_004036814.1| - 0.24 11.3 8.9 0.3 11.0 6.2 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit APG6 PF04111.7 gi|313126544|ref|YP_004036814.1| - 0.25 10.3 7.0 0.28 10.2 4.8 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|313126544|ref|YP_004036814.1| - 0.32 10.5 10.1 0.55 9.7 7.0 1.4 1 1 0 1 1 1 0 IncA protein Microtub_assoc PF07989.6 gi|313126544|ref|YP_004036814.1| - 0.38 10.6 3.4 0.55 10.1 2.0 1.5 2 0 0 2 2 1 0 Microtubule associated HAUS6_N PF14661.1 gi|313126544|ref|YP_004036814.1| - 0.38 10.0 4.1 0.41 9.9 2.8 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus BTV_NS2 PF04514.7 gi|313126544|ref|YP_004036814.1| - 0.44 9.3 7.6 0.54 9.0 5.3 1.0 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 EMP24_GP25L PF01105.19 gi|313126544|ref|YP_004036814.1| - 0.53 9.9 4.5 0.26 10.9 1.7 1.6 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Imm5 PF14423.1 gi|313126544|ref|YP_004036814.1| - 0.59 9.7 2.7 0.73 9.4 1.9 1.0 1 0 0 1 1 1 0 Immunity protein Imm5 Syntaxin PF00804.20 gi|313126544|ref|YP_004036814.1| - 0.64 10.2 4.2 0.75 9.9 2.5 1.4 1 1 0 1 1 1 0 Syntaxin FTA4 PF13093.1 gi|313126544|ref|YP_004036814.1| - 0.74 9.2 5.0 0.61 9.4 2.9 1.3 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 MIF4G_like_2 PF09090.6 gi|313126544|ref|YP_004036814.1| - 0.81 8.8 3.9 0.97 8.6 2.7 1.0 1 0 0 1 1 1 0 MIF4G like DUF2937 PF11157.3 gi|313126544|ref|YP_004036814.1| - 0.87 8.8 3.4 0.78 9.0 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) DUF2407_C PF13373.1 gi|313126544|ref|YP_004036814.1| - 0.88 9.4 3.6 1.1 9.1 2.5 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain Geminin PF07412.7 gi|313126544|ref|YP_004036814.1| - 0.89 9.2 7.0 1.2 8.7 4.8 1.2 1 0 0 1 1 1 0 Geminin Ham1p_like PF01725.11 gi|313126544|ref|YP_004036814.1| - 1.1 8.6 4.6 1.4 8.2 3.1 1.3 1 1 0 1 1 1 0 Ham1 family Spc24 PF08286.6 gi|313126544|ref|YP_004036814.1| - 1.1 8.9 8.3 2.1 8.0 5.7 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DivIC PF04977.10 gi|313126544|ref|YP_004036814.1| - 1.2 8.7 5.7 1.5 8.3 3.5 1.7 1 1 0 1 1 1 0 Septum formation initiator PhoU PF01895.14 gi|313126544|ref|YP_004036814.1| - 1.3 9.5 8.4 2.1 8.8 5.8 1.6 1 1 0 1 1 1 0 PhoU domain CASP_C PF08172.7 gi|313126544|ref|YP_004036814.1| - 1.4 7.8 6.8 3.5 6.5 4.6 1.5 1 1 0 1 1 1 0 CASP C terminal DUF2203 PF09969.4 gi|313126544|ref|YP_004036814.1| - 1.4 9.1 4.9 2.3 8.4 3.4 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) AATF-Che1 PF13339.1 gi|313126544|ref|YP_004036814.1| - 1.6 8.8 6.3 3.3 7.8 4.4 1.6 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor RHH_1 PF01402.16 gi|313126544|ref|YP_004036814.1| - 1.6 8.7 5.1 13 5.8 0.0 3.2 3 1 1 4 4 3 0 Ribbon-helix-helix protein, copG family ISG65-75 PF11727.3 gi|313126544|ref|YP_004036814.1| - 1.9 7.4 9.3 2.2 7.2 6.4 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF3584 PF12128.3 gi|313126544|ref|YP_004036814.1| - 2.2 5.5 11.2 2.5 5.3 7.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) YtxH PF12732.2 gi|313126544|ref|YP_004036814.1| - 2.2 8.7 5.7 11 6.4 3.9 2.0 1 1 0 1 1 1 0 YtxH-like protein PspB PF06667.7 gi|313126544|ref|YP_004036814.1| - 2.5 8.1 5.6 16 5.5 3.4 2.3 1 1 0 1 1 1 0 Phage shock protein B DivIVA PF05103.8 gi|313126544|ref|YP_004036814.1| - 3.2 7.8 12.8 5.6 7.0 8.9 1.4 1 1 0 1 1 1 0 DivIVA protein TMF_DNA_bd PF12329.3 gi|313126544|ref|YP_004036814.1| - 4 7.3 11.1 3 7.7 5.4 2.3 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding SAPS PF04499.10 gi|313126544|ref|YP_004036814.1| - 5.4 5.5 7.3 6.4 5.2 5.0 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Tropomyosin_1 PF12718.2 gi|313126544|ref|YP_004036814.1| - 5.7 6.7 15.9 1.3 8.8 8.0 1.8 1 1 1 2 2 2 0 Tropomyosin like SlyX PF04102.7 gi|313126544|ref|YP_004036814.1| - 9.5 6.6 10.8 1.6 9.1 1.1 2.5 2 1 1 3 3 2 0 SlyX PALP PF00291.20 gi|313126545|ref|YP_004036815.1| - 9.6e-53 179.3 0.9 1e-52 179.2 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Jun PF03957.8 gi|313126545|ref|YP_004036815.1| - 0.064 12.9 0.1 0.22 11.2 0.0 1.8 1 1 1 2 2 2 0 Jun-like transcription factor CoA_binding_2 PF13380.1 gi|313126546|ref|YP_004036816.1| - 1.6e-35 121.8 0.0 1.8e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|313126546|ref|YP_004036816.1| - 2.9e-05 24.5 0.0 4.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.12 gi|313126546|ref|YP_004036816.1| - 0.013 15.0 0.0 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA KaiC PF06745.8 gi|313126547|ref|YP_004036817.1| - 2.7e-05 23.4 0.0 7.4e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|313126547|ref|YP_004036817.1| - 0.0023 17.4 0.0 0.0042 16.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_25 PF13481.1 gi|313126547|ref|YP_004036817.1| - 0.0063 15.9 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|313126547|ref|YP_004036817.1| - 0.041 13.6 0.1 0.1 12.3 0.1 1.7 2 0 0 2 2 2 0 Part of AAA domain DUF1477 PF07346.6 gi|313126547|ref|YP_004036817.1| - 0.11 12.5 0.1 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1477) AAA_35 PF14516.1 gi|313126547|ref|YP_004036817.1| - 0.12 10.9 0.0 0.52 8.8 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain UbiA PF01040.13 gi|313126548|ref|YP_004036818.1| - 2e-42 145.2 20.2 2.6e-42 144.8 14.0 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family YtpI PF14007.1 gi|313126548|ref|YP_004036818.1| - 8.5 6.3 8.3 0.45 10.4 0.2 3.0 3 1 1 4 4 4 0 YtpI-like protein DUF1405 PF07187.6 gi|313126549|ref|YP_004036819.1| - 2e-48 164.2 13.0 3e-48 163.6 9.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) RseC_MucC PF04246.7 gi|313126549|ref|YP_004036819.1| - 1.5 8.3 3.7 35 3.9 0.1 3.2 3 1 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC UPF0016 PF01169.14 gi|313126550|ref|YP_004036820.1| - 8.5e-30 102.7 35.3 1.3e-17 63.6 6.5 3.0 3 0 0 3 3 3 2 Uncharacterized protein family UPF0016 Fe_dep_repress PF01325.14 gi|313126551|ref|YP_004036821.1| - 0.00016 21.5 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|313126551|ref|YP_004036821.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 FeoA domain SAM_adeno_trans PF01887.11 gi|313126554|ref|YP_004036824.1| - 4.8e-76 255.2 1.5 5.4e-76 255.0 1.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase ABC_tran PF00005.22 gi|313126555|ref|YP_004036825.1| - 3.2e-35 121.3 0.0 5.6e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313126555|ref|YP_004036825.1| - 1.9e-10 40.5 0.3 1.9e-10 40.5 0.2 3.2 3 1 1 4 4 4 1 TOBE domain AAA_21 PF13304.1 gi|313126555|ref|YP_004036825.1| - 5.4e-09 36.4 0.0 1.3e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|313126555|ref|YP_004036825.1| - 4.9e-05 23.5 0.1 0.021 15.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|313126555|ref|YP_004036825.1| - 0.00025 20.3 0.0 0.0094 15.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|313126555|ref|YP_004036825.1| - 0.00038 20.5 0.8 0.0015 18.5 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.12 gi|313126555|ref|YP_004036825.1| - 0.00076 19.5 0.3 0.0046 17.0 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|313126555|ref|YP_004036825.1| - 0.00095 19.3 0.1 0.0049 17.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313126555|ref|YP_004036825.1| - 0.011 14.8 0.0 0.036 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|313126555|ref|YP_004036825.1| - 0.012 14.7 0.1 0.052 12.6 0.0 2.0 3 0 0 3 3 3 0 Zeta toxin AAA_14 PF13173.1 gi|313126555|ref|YP_004036825.1| - 0.024 14.5 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|313126555|ref|YP_004036825.1| - 0.031 12.9 0.0 0.044 12.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|313126555|ref|YP_004036825.1| - 0.034 13.6 0.1 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|313126555|ref|YP_004036825.1| - 0.035 13.9 0.1 0.29 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|313126555|ref|YP_004036825.1| - 0.039 14.7 0.0 0.14 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313126555|ref|YP_004036825.1| - 0.042 13.2 0.5 0.19 11.0 0.3 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313126555|ref|YP_004036825.1| - 0.096 12.6 0.1 0.7 9.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|313126555|ref|YP_004036825.1| - 0.17 12.1 0.1 0.63 10.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain MatE PF01554.13 gi|313126556|ref|YP_004036826.1| - 2.3e-47 160.6 26.1 2.6e-24 85.6 7.3 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|313126556|ref|YP_004036826.1| - 9.4e-08 31.9 5.9 9.4e-08 31.9 4.1 4.5 3 1 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain TcdA_TcdB_pore PF12920.2 gi|313126556|ref|YP_004036826.1| - 4.4 5.0 7.1 6.3 4.5 4.9 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain MDMPI_C PF07398.6 gi|313126557|ref|YP_004036827.1| - 0.11 13.1 4.2 8.9 6.9 0.0 2.4 2 0 0 2 2 2 0 MDMPI C-terminal domain COX1 PF00115.15 gi|313126558|ref|YP_004036828.1| - 1.1e-148 495.6 51.0 1.3e-148 495.3 35.4 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I BtpA PF03437.10 gi|313126559|ref|YP_004036829.1| - 2.6e-86 289.0 4.8 2.9e-86 288.8 3.3 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|313126559|ref|YP_004036829.1| - 0.0029 16.1 0.3 0.0067 14.9 0.2 1.6 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|313126559|ref|YP_004036829.1| - 0.12 11.6 6.3 0.15 11.2 0.7 2.8 2 1 1 3 3 3 0 PcrB family Pyr_redox PF00070.22 gi|313126560|ref|YP_004036830.1| - 5.4e-13 49.1 2.8 1.4e-10 41.3 0.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|313126560|ref|YP_004036830.1| - 3.2e-10 40.2 1.3 2.1e-09 37.5 0.9 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313126560|ref|YP_004036830.1| - 5.2e-06 26.6 1.2 0.016 15.2 0.1 3.1 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|313126560|ref|YP_004036830.1| - 5.9e-06 26.1 0.9 0.66 9.7 0.0 3.4 2 1 0 3 3 3 3 FAD-NAD(P)-binding DAO PF01266.19 gi|313126560|ref|YP_004036830.1| - 1.9e-05 23.7 7.9 0.055 12.3 0.1 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313126560|ref|YP_004036830.1| - 0.0089 16.0 4.1 1.6 8.8 0.0 3.5 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|313126560|ref|YP_004036830.1| - 0.061 13.3 0.2 2.1 8.3 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|313126560|ref|YP_004036830.1| - 0.065 12.6 0.1 0.38 10.1 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GHMP_kinases_N PF00288.21 gi|313126561|ref|YP_004036831.1| - 1.2e-06 28.4 3.9 2.8e-05 24.1 2.4 2.3 1 1 1 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|313126561|ref|YP_004036831.1| - 0.004 17.3 0.0 0.008 16.3 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal TarH PF02203.10 gi|313126561|ref|YP_004036831.1| - 0.0044 16.8 3.6 0.0094 15.7 2.5 1.6 1 1 0 1 1 1 1 Tar ligand binding domain homologue Polyketide_cyc2 PF10604.4 gi|313126563|ref|YP_004036833.1| - 3.8e-13 49.8 5.9 4.7e-13 49.4 4.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|313126563|ref|YP_004036833.1| - 0.0011 19.0 0.2 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport YqjK PF13997.1 gi|313126563|ref|YP_004036833.1| - 0.0096 16.0 0.5 0.018 15.1 0.0 1.7 2 0 0 2 2 2 1 YqjK-like protein Flavin_Reduct PF01613.13 gi|313126564|ref|YP_004036834.1| - 2.5e-27 95.6 0.8 3.1e-27 95.3 0.6 1.1 1 0 0 1 1 1 1 Flavin reductase like domain HTH_1 PF00126.22 gi|313126565|ref|YP_004036835.1| - 0.00013 21.5 0.1 0.00039 20.1 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|313126565|ref|YP_004036835.1| - 0.0002 21.5 0.0 0.0032 17.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|313126565|ref|YP_004036835.1| - 0.00023 21.0 0.0 0.00037 20.3 0.0 1.3 1 0 0 1 1 1 1 Replication-relaxation HTH_20 PF12840.2 gi|313126565|ref|YP_004036835.1| - 0.002 17.8 0.0 0.0053 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313126565|ref|YP_004036835.1| - 0.004 16.7 0.3 0.017 14.8 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|313126565|ref|YP_004036835.1| - 0.0052 16.5 0.0 0.014 15.1 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF1186 PF06685.6 gi|313126565|ref|YP_004036835.1| - 0.034 13.2 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1186) HTH_5 PF01022.15 gi|313126565|ref|YP_004036835.1| - 0.035 13.7 0.0 0.087 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|313126565|ref|YP_004036835.1| - 0.066 13.1 0.0 2 8.3 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|313126565|ref|YP_004036835.1| - 0.13 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DICT PF10069.4 gi|313126567|ref|YP_004036837.1| - 1.8e-25 88.9 0.0 2.7e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems NPCBM_assoc PF10633.4 gi|313126568|ref|YP_004036838.1| - 7.2e-18 64.4 13.8 0.00094 19.1 0.0 7.0 6 1 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|313126568|ref|YP_004036838.1| - 9.9e-14 51.2 18.8 0.00036 20.5 0.3 5.2 5 0 0 5 5 5 4 CARDB Transglut_C PF00927.17 gi|313126568|ref|YP_004036838.1| - 3.9e-06 26.8 1.0 9.2 6.3 0.0 5.1 5 0 0 5 5 5 2 Transglutaminase family, C-terminal ig like domain COP-gamma_platf PF08752.5 gi|313126568|ref|YP_004036838.1| - 0.0013 18.5 0.4 0.016 15.0 0.1 2.6 2 1 1 3 3 3 1 Coatomer gamma subunit appendage platform subdomain PEP-utilizers PF00391.18 gi|313126568|ref|YP_004036838.1| - 0.0018 17.7 0.1 0.022 14.3 0.0 2.3 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain TRAP_alpha PF03896.11 gi|313126568|ref|YP_004036838.1| - 0.0031 16.5 2.7 2.5 7.0 0.1 3.7 4 0 0 4 4 4 2 Translocon-associated protein (TRAP), alpha subunit Fn3-like PF14310.1 gi|313126568|ref|YP_004036838.1| - 0.0055 16.6 0.0 4.4 7.3 0.0 4.3 4 0 0 4 4 3 1 Fibronectin type III-like domain DUF4625 PF15418.1 gi|313126568|ref|YP_004036838.1| - 0.0066 16.5 0.1 27 4.8 0.0 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) DUF11 PF01345.13 gi|313126568|ref|YP_004036838.1| - 0.025 14.6 1.9 0.025 14.6 1.3 5.5 5 0 0 5 5 5 0 Domain of unknown function DUF11 DUF4469 PF14734.1 gi|313126568|ref|YP_004036838.1| - 0.041 13.7 0.4 0.45 10.4 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4469) with IG-like fold Filamin PF00630.14 gi|313126568|ref|YP_004036838.1| - 0.22 12.1 3.5 4.3 7.9 0.3 3.8 2 2 1 3 3 3 0 Filamin/ABP280 repeat Pilin PF00114.14 gi|313126568|ref|YP_004036838.1| - 0.71 10.6 11.9 1.3 9.7 2.7 3.9 1 1 2 3 3 3 0 Pilin (bacterial filament) DUF1034 PF06280.7 gi|313126568|ref|YP_004036838.1| - 4.4 7.7 14.5 9.2 6.7 0.1 5.0 4 2 0 4 4 4 0 Fn3-like domain (DUF1034) MMPL PF03176.10 gi|313126569|ref|YP_004036839.1| - 2e-38 131.9 22.8 2.9e-19 68.9 5.3 2.4 2 0 0 2 2 2 2 MMPL family Patched PF02460.13 gi|313126569|ref|YP_004036839.1| - 2.3e-17 62.2 23.2 6.8e-10 37.5 4.3 2.2 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.3 gi|313126569|ref|YP_004036839.1| - 3.6e-15 55.7 9.7 1.7e-10 40.5 0.3 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ETRAMP PF09716.5 gi|313126569|ref|YP_004036839.1| - 0.26 11.2 0.8 36 4.4 0.0 3.6 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) TrmB PF01978.14 gi|313126570|ref|YP_004036840.1| - 7.1e-16 57.6 0.1 1.2e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|313126570|ref|YP_004036840.1| - 4.7e-05 22.9 0.3 0.00018 21.0 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|313126570|ref|YP_004036840.1| - 0.0023 17.7 0.0 0.0041 16.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|313126570|ref|YP_004036840.1| - 0.0024 17.5 0.1 0.0058 16.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313126570|ref|YP_004036840.1| - 0.0041 16.8 0.5 0.0086 15.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Regulator_TrmB PF11495.3 gi|313126570|ref|YP_004036840.1| - 0.011 14.7 0.1 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB PaaX_C PF08223.6 gi|313126570|ref|YP_004036840.1| - 0.012 15.3 0.6 2.7 7.6 0.1 2.1 1 1 1 2 2 2 0 PaaX-like protein C-terminal domain PLDc_2 PF13091.1 gi|313126570|ref|YP_004036840.1| - 0.025 14.3 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain DUF424 PF04242.8 gi|313126570|ref|YP_004036840.1| - 0.035 14.1 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF424) Inositol_P PF00459.20 gi|313126571|ref|YP_004036841.1| - 5.8e-49 166.8 3.1 7.1e-49 166.5 2.1 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|313126571|ref|YP_004036841.1| - 0.063 12.0 0.2 0.087 11.6 0.1 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase Glyco_hydro_3_C PF01915.17 gi|313126571|ref|YP_004036841.1| - 0.61 9.5 3.1 0.61 9.5 1.2 1.6 1 1 1 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain Polysacc_synt PF01943.12 gi|313126572|ref|YP_004036842.1| - 0.017 14.3 1.5 0.017 14.3 1.0 1.6 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein DUF3040 PF11239.3 gi|313126572|ref|YP_004036842.1| - 0.4 10.7 4.6 3.3 7.8 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF2244 PF10003.4 gi|313126572|ref|YP_004036842.1| - 5.3 6.4 7.2 0.38 10.1 0.4 1.9 1 1 1 2 2 2 0 Integral membrane protein (DUF2244) Acylphosphatase PF00708.13 gi|313126573|ref|YP_004036843.1| - 5.9e-27 93.6 0.1 6.2e-27 93.5 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase PGM_PMM_I PF02878.11 gi|313126574|ref|YP_004036844.1| - 2.5e-34 117.7 0.0 4.7e-34 116.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|313126574|ref|YP_004036844.1| - 5.6e-19 68.3 0.2 5.6e-19 68.3 0.1 2.5 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|313126574|ref|YP_004036844.1| - 1.3e-11 44.2 0.0 3.8e-11 42.8 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|313126574|ref|YP_004036844.1| - 0.00089 19.2 0.0 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Bmp PF02608.9 gi|313126575|ref|YP_004036845.1| - 5.7e-67 225.6 2.7 7.9e-67 225.1 1.9 1.2 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_4 PF13407.1 gi|313126575|ref|YP_004036845.1| - 2.4e-08 33.6 1.6 4.1e-08 32.8 1.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|313126575|ref|YP_004036845.1| - 0.0025 17.6 0.6 0.0025 17.6 0.4 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|313126576|ref|YP_004036846.1| - 3.1e-45 153.8 0.0 8.2e-29 100.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|313126576|ref|YP_004036846.1| - 6.8e-13 49.2 0.0 9.3e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|313126576|ref|YP_004036846.1| - 6.8e-06 25.3 0.0 0.0051 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|313126576|ref|YP_004036846.1| - 6.9e-05 22.3 0.1 0.0086 15.5 0.0 2.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain Bac_DnaA PF00308.13 gi|313126576|ref|YP_004036846.1| - 0.00038 20.1 1.1 0.0015 18.2 0.0 2.3 3 0 0 3 3 3 1 Bacterial dnaA protein SMC_N PF02463.14 gi|313126576|ref|YP_004036846.1| - 0.0034 16.6 0.1 3.3 6.8 0.0 2.9 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|313126576|ref|YP_004036846.1| - 0.0064 15.6 0.0 0.078 12.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313126576|ref|YP_004036846.1| - 0.01 15.5 0.3 2.8 7.7 0.0 3.5 3 0 0 3 3 3 0 Part of AAA domain AAA_23 PF13476.1 gi|313126576|ref|YP_004036846.1| - 0.017 15.4 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313126576|ref|YP_004036846.1| - 0.018 14.6 0.2 0.097 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|313126576|ref|YP_004036846.1| - 0.029 14.5 0.1 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313126576|ref|YP_004036846.1| - 0.064 12.6 0.3 0.26 10.6 0.2 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|313126576|ref|YP_004036846.1| - 0.067 12.6 0.6 0.68 9.3 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_2 PF02653.11 gi|313126577|ref|YP_004036847.1| - 4.3e-43 147.2 29.4 4.3e-43 147.2 20.4 2.0 1 1 1 2 2 2 2 Branched-chain amino acid transport system / permease component DUF4574 PF15141.1 gi|313126577|ref|YP_004036847.1| - 2.4 7.9 6.7 0.19 11.5 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4574) BPD_transp_2 PF02653.11 gi|313126578|ref|YP_004036848.1| - 2.5e-36 125.0 31.7 3.7e-36 124.4 22.0 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component TcdA_TcdB_pore PF12920.2 gi|313126579|ref|YP_004036849.1| - 0.56 8.0 3.5 0.69 7.7 2.4 1.1 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain MGC-24 PF05283.6 gi|313126579|ref|YP_004036849.1| - 8.8 6.0 6.6 14 5.4 0.4 2.2 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24) Ribosomal_S30AE PF02482.14 gi|313126580|ref|YP_004036850.1| - 0.13 12.7 0.2 0.15 12.5 0.1 1.1 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein Trp_halogenase PF04820.9 gi|313126581|ref|YP_004036851.1| - 1.1e-15 57.2 1.8 2.1e-11 43.1 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|313126581|ref|YP_004036851.1| - 2.2e-12 46.5 4.9 1.6e-06 27.2 1.9 2.4 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|313126581|ref|YP_004036851.1| - 5.2e-12 45.3 4.9 2.1e-06 26.8 0.2 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|313126581|ref|YP_004036851.1| - 2.6e-10 39.9 7.2 9.2e-06 24.9 2.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|313126581|ref|YP_004036851.1| - 2.4e-09 36.7 4.8 4.8e-08 32.4 3.3 2.3 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|313126581|ref|YP_004036851.1| - 2.5e-08 33.3 0.9 1.4e-07 30.8 0.2 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|313126581|ref|YP_004036851.1| - 5.6e-08 32.0 0.3 1.1e-07 31.0 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|313126581|ref|YP_004036851.1| - 8.1e-07 29.2 0.1 1.4e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313126581|ref|YP_004036851.1| - 8.6e-07 29.2 1.6 0.00059 20.1 0.5 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|313126581|ref|YP_004036851.1| - 1.8e-06 28.0 0.1 1.8e-06 28.0 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313126581|ref|YP_004036851.1| - 3.9e-06 25.5 1.1 0.00014 20.5 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|313126581|ref|YP_004036851.1| - 3.7e-05 23.6 1.0 3.7e-05 23.6 0.7 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|313126581|ref|YP_004036851.1| - 0.00039 19.4 1.3 0.02 13.8 0.3 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|313126581|ref|YP_004036851.1| - 0.0011 18.6 0.1 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FBPase PF00316.15 gi|313126581|ref|YP_004036851.1| - 0.018 13.8 0.0 0.028 13.2 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase ApbA PF02558.11 gi|313126581|ref|YP_004036851.1| - 0.021 14.2 0.1 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|313126581|ref|YP_004036851.1| - 0.026 14.3 0.1 0.049 13.4 0.1 1.4 1 0 0 1 1 1 0 ThiF family GDI PF00996.13 gi|313126581|ref|YP_004036851.1| - 0.031 12.5 0.4 0.17 10.1 0.0 1.9 2 0 0 2 2 2 0 GDP dissociation inhibitor Shikimate_DH PF01488.15 gi|313126581|ref|YP_004036851.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Peptidase_M20 PF01546.23 gi|313126582|ref|YP_004036852.1| - 4.6e-23 81.7 11.7 1.3e-21 76.9 8.1 2.1 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|313126582|ref|YP_004036852.1| - 2.4e-13 49.7 0.7 5.5e-13 48.6 0.5 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Na_H_antiporter PF03553.9 gi|313126583|ref|YP_004036853.1| - 1.5e-44 152.3 52.5 1.1e-30 106.6 14.8 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family Ribosomal_S10 PF00338.17 gi|313126585|ref|YP_004036855.1| - 4.2e-11 42.5 0.0 5e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.23 gi|313126586|ref|YP_004036856.1| - 9.5e-19 67.3 0.1 1.2e-18 67.0 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain PaaX PF07848.7 gi|313126588|ref|YP_004036858.1| - 0.046 13.7 0.3 0.15 12.0 0.2 1.8 1 0 0 1 1 1 0 PaaX-like protein TrmB PF01978.14 gi|313126589|ref|YP_004036859.1| - 0.028 14.1 0.1 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|313126589|ref|YP_004036859.1| - 0.077 12.5 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain Death PF00531.17 gi|313126589|ref|YP_004036859.1| - 0.079 12.7 0.0 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 Death domain PqqD PF05402.7 gi|313126589|ref|YP_004036859.1| - 0.096 12.7 0.1 0.23 11.5 0.1 1.7 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) GntR PF00392.16 gi|313126589|ref|YP_004036859.1| - 0.11 11.9 0.1 0.3 10.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF2576 PF10845.3 gi|313126589|ref|YP_004036859.1| - 0.14 11.3 0.1 0.43 9.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2576) ECH PF00378.15 gi|313126590|ref|YP_004036860.1| - 4.5e-65 219.1 0.1 5.1e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|313126590|ref|YP_004036860.1| - 0.0011 17.8 0.0 0.0018 17.1 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH_C PF13766.1 gi|313126590|ref|YP_004036860.1| - 0.11 12.6 0.4 0.21 11.7 0.1 1.6 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region Peptidase_S49 PF01343.13 gi|313126590|ref|YP_004036860.1| - 0.14 11.9 0.0 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Peptidase family S49 MCPsignal PF00015.16 gi|313126591|ref|YP_004036861.1| - 5.4e-45 153.5 57.5 9.6e-42 142.9 25.2 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|313126591|ref|YP_004036861.1| - 5.9e-11 42.6 1.8 1.3e-10 41.5 0.0 2.5 3 1 0 3 3 3 1 PAS domain PAS PF00989.19 gi|313126591|ref|YP_004036861.1| - 2.4e-10 40.1 1.0 1.9e-09 37.3 0.0 2.8 3 0 0 3 3 2 1 PAS fold PAS_4 PF08448.5 gi|313126591|ref|YP_004036861.1| - 2.6e-08 33.8 0.1 2.6e-08 33.8 0.1 2.6 3 0 0 3 3 2 1 PAS fold PAS_10 PF13596.1 gi|313126591|ref|YP_004036861.1| - 1.1e-07 32.0 1.2 1.5e-05 25.1 0.0 3.4 2 1 1 3 3 3 1 PAS domain PAS_8 PF13188.1 gi|313126591|ref|YP_004036861.1| - 0.00082 19.1 0.0 0.0026 17.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|313126591|ref|YP_004036861.1| - 0.017 15.1 0.0 0.051 13.6 0.0 1.9 1 0 0 1 1 1 0 PAS fold DUF1664 PF07889.7 gi|313126591|ref|YP_004036861.1| - 0.044 13.5 27.8 0.23 11.2 1.8 4.2 1 1 1 4 4 4 0 Protein of unknown function (DUF1664) EspB PF05802.6 gi|313126591|ref|YP_004036861.1| - 0.061 12.2 42.6 0.1 11.5 11.4 3.2 1 1 2 3 3 3 0 Enterobacterial EspB protein Seryl_tRNA_N PF02403.17 gi|313126591|ref|YP_004036861.1| - 0.1 12.5 27.0 0.089 12.8 3.5 4.3 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Flu_NS2 PF00601.14 gi|313126591|ref|YP_004036861.1| - 0.14 12.3 11.3 3.8 7.7 0.1 4.2 3 2 1 4 4 4 0 Influenza non-structural protein (NS2) COG5 PF10392.4 gi|313126591|ref|YP_004036861.1| - 0.51 10.2 10.2 11 6.0 0.2 3.9 2 2 1 3 3 3 0 Golgi transport complex subunit 5 BLOC1_2 PF10046.4 gi|313126591|ref|YP_004036861.1| - 0.7 10.0 26.8 1.1 9.3 0.4 4.6 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tweety PF04906.8 gi|313126591|ref|YP_004036861.1| - 1.1 7.6 9.1 0.4 9.0 0.2 2.7 2 1 1 3 3 3 0 Tweety Laminin_II PF06009.7 gi|313126591|ref|YP_004036861.1| - 1.4 8.6 39.7 0.16 11.7 3.0 4.8 1 1 4 5 5 5 0 Laminin Domain II DUF948 PF06103.6 gi|313126591|ref|YP_004036861.1| - 1.5 8.7 30.0 4.9 7.0 0.1 5.9 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) GLE1 PF07817.8 gi|313126591|ref|YP_004036861.1| - 1.6 7.6 9.8 0.64 8.9 0.8 2.8 2 2 1 3 3 3 0 GLE1-like protein AAA_13 PF13166.1 gi|313126591|ref|YP_004036861.1| - 2 6.7 28.3 0.35 9.2 3.5 2.6 1 1 2 3 3 3 0 AAA domain DUF745 PF05335.8 gi|313126591|ref|YP_004036861.1| - 2.1 7.7 37.0 0.32 10.4 8.6 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF745) ApoO PF09769.4 gi|313126591|ref|YP_004036861.1| - 4.5 6.9 7.9 13 5.4 0.3 3.0 1 1 2 3 3 3 0 Apolipoprotein O FH2 PF02181.18 gi|313126591|ref|YP_004036861.1| - 5.5 5.7 16.5 1.2 7.9 2.4 3.1 1 1 2 3 3 3 0 Formin Homology 2 Domain DUF2450 PF10475.4 gi|313126591|ref|YP_004036861.1| - 5.5 5.7 12.0 2.3 7.0 1.1 2.5 2 1 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) TFIIS_C PF01096.13 gi|313126593|ref|YP_004036863.1| - 5e-18 64.4 4.0 5e-18 64.4 2.8 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|313126593|ref|YP_004036863.1| - 1.4e-07 31.0 8.7 0.00032 20.3 0.9 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|313126593|ref|YP_004036863.1| - 1.2e-06 28.0 0.6 1.2e-06 28.0 0.4 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|313126593|ref|YP_004036863.1| - 5.2e-05 22.9 7.5 0.0007 19.3 1.2 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|313126593|ref|YP_004036863.1| - 5.4e-05 22.9 9.2 0.0029 17.4 0.5 2.8 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.5 gi|313126593|ref|YP_004036863.1| - 0.00064 19.5 9.6 0.014 15.2 2.2 2.5 1 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|313126593|ref|YP_004036863.1| - 0.0022 17.1 8.2 0.28 10.4 0.1 4.0 4 0 0 4 4 4 1 zinc-ribbon domain UPF0547 PF10571.4 gi|313126593|ref|YP_004036863.1| - 0.0027 17.3 11.0 0.0048 16.5 0.0 3.9 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|313126593|ref|YP_004036863.1| - 0.011 15.3 9.3 0.051 13.1 0.0 3.5 3 1 1 4 4 4 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313126593|ref|YP_004036863.1| - 0.016 14.9 7.6 0.17 11.6 0.5 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|313126593|ref|YP_004036863.1| - 0.02 14.3 12.5 0.031 13.7 0.1 3.8 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-UBP PF02148.14 gi|313126593|ref|YP_004036863.1| - 0.023 14.8 4.5 0.11 12.6 0.2 2.3 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein PhnA_Zn_Ribbon PF08274.7 gi|313126593|ref|YP_004036863.1| - 0.025 14.3 14.7 0.71 9.7 0.0 4.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Baculo_LEF5_C PF11792.3 gi|313126593|ref|YP_004036863.1| - 0.027 13.8 1.1 0.027 13.8 0.8 2.3 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_4 PF13717.1 gi|313126593|ref|YP_004036863.1| - 0.031 13.9 10.6 0.049 13.3 0.1 3.4 3 1 0 3 3 3 0 zinc-ribbon domain Cytochrome_C554 PF13435.1 gi|313126593|ref|YP_004036863.1| - 0.038 14.0 4.5 0.052 13.6 3.1 1.2 1 0 0 1 1 1 0 Cytochrome c554 and c-prime Terminase_GpA PF05876.7 gi|313126593|ref|YP_004036863.1| - 0.063 11.6 5.4 0.026 12.8 2.6 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) PHF5 PF03660.9 gi|313126593|ref|YP_004036863.1| - 0.081 12.9 4.5 1.6 8.8 0.1 2.1 1 1 0 2 2 2 0 PHF5-like protein Ribosomal_L37ae PF01780.14 gi|313126593|ref|YP_004036863.1| - 0.17 11.7 7.2 0.46 10.3 0.7 2.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family DUF4428 PF14471.1 gi|313126593|ref|YP_004036863.1| - 0.2 11.4 1.8 0.27 10.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Nudix_N_2 PF14803.1 gi|313126593|ref|YP_004036863.1| - 0.2 11.3 11.2 3.6 7.3 0.0 3.8 3 1 0 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|313126593|ref|YP_004036863.1| - 0.3 10.4 17.1 0.11 11.7 1.9 3.7 2 2 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|313126593|ref|YP_004036863.1| - 0.41 10.9 13.7 0.16 12.3 1.2 2.9 1 1 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|313126593|ref|YP_004036863.1| - 0.81 9.2 0.1 0.81 9.2 0.1 3.5 3 1 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|313126593|ref|YP_004036863.1| - 0.82 9.7 0.1 0.82 9.7 0.1 3.3 3 1 1 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FdhE PF04216.7 gi|313126593|ref|YP_004036863.1| - 1.3 8.6 6.5 0.69 9.5 1.3 2.1 2 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation Ribosomal_S27e PF01667.12 gi|313126593|ref|YP_004036863.1| - 1.5 8.4 0.1 1.5 8.4 0.0 3.2 3 1 0 3 3 3 0 Ribosomal protein S27 RRN7 PF11781.3 gi|313126593|ref|YP_004036863.1| - 1.5 8.3 15.8 2.4 7.7 2.6 4.1 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2072 PF09845.4 gi|313126593|ref|YP_004036863.1| - 1.7 8.5 6.0 7.9 6.4 0.3 2.3 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Rubredoxin PF00301.15 gi|313126593|ref|YP_004036863.1| - 1.7 8.5 9.0 4.5 7.2 0.2 3.3 3 1 1 4 4 4 0 Rubredoxin zinc-ribbons_6 PF07191.7 gi|313126593|ref|YP_004036863.1| - 2 8.2 7.4 8.4 6.2 0.2 2.4 2 1 0 2 2 2 0 zinc-ribbons HypA PF01155.14 gi|313126593|ref|YP_004036863.1| - 3.4 7.4 10.6 3.9 7.1 0.7 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-C2H2_jaz PF12171.3 gi|313126593|ref|YP_004036863.1| - 3.7 7.8 5.6 81 3.5 0.0 3.6 4 0 0 4 4 3 0 Zinc-finger double-stranded RNA-binding IBR PF01485.16 gi|313126593|ref|YP_004036863.1| - 3.8 7.4 11.2 17 5.3 0.2 3.2 2 1 0 2 2 2 0 IBR domain Zn_Tnp_IS91 PF14319.1 gi|313126593|ref|YP_004036863.1| - 5.2 6.6 9.0 0.43 10.1 0.9 2.7 1 1 1 2 2 2 0 Transposase zinc-binding domain zf-IS66 PF13005.2 gi|313126593|ref|YP_004036863.1| - 5.7 6.9 11.5 5.8 6.9 0.0 3.8 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF3795 PF12675.2 gi|313126593|ref|YP_004036863.1| - 7.6 6.7 9.5 1.2 9.3 3.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3795) DUF164 PF02591.10 gi|313126593|ref|YP_004036863.1| - 8.6 6.2 8.9 12 5.7 0.0 3.7 3 1 1 4 4 4 0 Putative zinc ribbon domain zf-tcix PF14952.1 gi|313126593|ref|YP_004036863.1| - 9.8 5.6 7.4 6.9 6.0 0.2 3.0 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding GCD14 PF08704.5 gi|313126595|ref|YP_004036865.1| - 1.6e-17 63.8 0.0 2.8e-14 53.2 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|313126595|ref|YP_004036865.1| - 5.5e-14 52.6 0.2 1.2e-13 51.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313126595|ref|YP_004036865.1| - 2.5e-12 46.8 2.4 7.7e-12 45.2 0.4 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126595|ref|YP_004036865.1| - 4.6e-10 39.2 0.0 6.5e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313126595|ref|YP_004036865.1| - 5.6e-09 35.5 0.0 1e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|313126595|ref|YP_004036865.1| - 1.2e-06 29.3 0.3 2.5e-06 28.2 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|313126595|ref|YP_004036865.1| - 2.1e-06 26.9 0.0 2.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.15 gi|313126595|ref|YP_004036865.1| - 3.5e-06 26.2 0.0 5.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|313126595|ref|YP_004036865.1| - 7.7e-06 25.2 0.0 1.3e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|313126595|ref|YP_004036865.1| - 1.3e-05 24.8 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|313126595|ref|YP_004036865.1| - 3.3e-05 23.6 0.0 7.7e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|313126595|ref|YP_004036865.1| - 0.00055 19.3 0.0 0.00084 18.7 0.0 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|313126595|ref|YP_004036865.1| - 0.00091 19.6 0.1 0.002 18.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126595|ref|YP_004036865.1| - 0.0027 18.0 0.0 0.0065 16.8 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|313126595|ref|YP_004036865.1| - 0.022 14.3 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|313126595|ref|YP_004036865.1| - 0.022 15.2 0.0 0.043 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|313126595|ref|YP_004036865.1| - 0.051 13.1 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|313126595|ref|YP_004036865.1| - 0.055 13.0 0.0 0.072 12.6 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase NAC PF01849.13 gi|313126596|ref|YP_004036866.1| - 7.4e-18 63.8 0.8 1e-17 63.4 0.5 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|313126596|ref|YP_004036866.1| - 6.3e-05 22.6 1.7 0.00015 21.4 0.1 2.3 2 0 0 2 2 2 1 UBA/TS-N domain CUE PF02845.11 gi|313126596|ref|YP_004036866.1| - 0.016 14.6 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 CUE domain DUF3867 PF12983.2 gi|313126596|ref|YP_004036866.1| - 0.038 13.9 0.0 0.05 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) Methyltransf_3 PF01596.12 gi|313126597|ref|YP_004036867.1| - 2.7e-13 49.4 0.0 3.3e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|313126597|ref|YP_004036867.1| - 3.4e-11 43.7 0.0 5.2e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|313126597|ref|YP_004036867.1| - 3.6e-11 43.8 0.1 7e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313126597|ref|YP_004036867.1| - 1.9e-05 24.6 0.0 5.9e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126597|ref|YP_004036867.1| - 0.0034 17.7 0.0 0.011 16.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|313126597|ref|YP_004036867.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.14 gi|313126597|ref|YP_004036867.1| - 0.084 12.3 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MM_CoA_mutase PF01642.17 gi|313126598|ref|YP_004036868.1| - 7.1e-207 687.6 1.9 8e-207 687.4 1.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Keratin PF02422.11 gi|313126599|ref|YP_004036869.1| - 0.11 12.5 1.3 0.14 12.1 0.9 1.3 1 0 0 1 1 1 0 Keratin OrfB_IS605 PF01385.14 gi|313126600|ref|YP_004036870.1| - 6.4e-45 153.2 0.1 9.4e-45 152.7 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313126600|ref|YP_004036870.1| - 6.2e-24 83.4 2.5 1.3e-23 82.4 1.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|313126600|ref|YP_004036870.1| - 0.19 11.8 2.7 0.5 10.4 1.9 1.8 1 0 0 1 1 1 0 C1-like domain Ribosomal_L37ae PF01780.14 gi|313126600|ref|YP_004036870.1| - 0.62 9.9 3.3 0.53 10.1 0.4 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.7 gi|313126600|ref|YP_004036870.1| - 7 6.0 8.3 52 3.2 1.6 2.9 1 1 1 2 2 2 0 TFIIB zinc-binding YbjQ_1 PF01906.12 gi|313126602|ref|YP_004036872.1| - 7.8e-38 129.1 2.4 9.4e-38 128.8 1.7 1.1 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|313126602|ref|YP_004036872.1| - 0.00057 19.9 0.0 0.0078 16.3 0.0 2.1 2 0 0 2 2 2 1 Selenium binding protein DMRL_synthase PF00885.14 gi|313126602|ref|YP_004036872.1| - 0.03 13.9 0.3 0.042 13.5 0.2 1.3 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase DUF4156 PF13698.1 gi|313126602|ref|YP_004036872.1| - 0.05 13.4 0.2 0.093 12.6 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Glyoxalase_4 PF13669.1 gi|313126603|ref|YP_004036873.1| - 9.3e-16 57.8 0.2 1.1e-15 57.5 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|313126603|ref|YP_004036873.1| - 7e-08 33.0 0.2 7.7e-08 32.9 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|313126603|ref|YP_004036873.1| - 3.5e-06 27.0 0.9 4.3e-06 26.7 0.6 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313126603|ref|YP_004036873.1| - 4.6e-05 23.3 0.4 5.6e-05 23.1 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Spore_permease PF03845.8 gi|313126604|ref|YP_004036874.1| - 0.0038 15.9 1.8 0.0042 15.7 1.3 1.0 1 0 0 1 1 1 1 Spore germination protein Pga1 PF10333.4 gi|313126604|ref|YP_004036874.1| - 0.3 10.7 2.7 0.36 10.4 1.9 1.1 1 0 0 1 1 1 0 GPI-Mannosyltransferase II co-activator AMP-binding PF00501.23 gi|313126605|ref|YP_004036875.1| - 7.6e-94 314.4 1.5 9.3e-94 314.1 1.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313126605|ref|YP_004036875.1| - 2.1e-16 60.6 0.1 5.5e-16 59.2 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|313126606|ref|YP_004036876.1| - 5.3e-88 295.1 0.0 6.2e-88 294.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313126606|ref|YP_004036876.1| - 2.3e-20 73.3 0.2 6.6e-20 71.8 0.2 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|313126607|ref|YP_004036877.1| - 2.5e-43 147.7 1.8 2.9e-43 147.5 0.6 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313126607|ref|YP_004036877.1| - 3.3e-25 88.8 0.4 7.6e-25 87.6 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313126607|ref|YP_004036877.1| - 3.9e-20 71.1 2.3 6e-20 70.5 0.7 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|313126607|ref|YP_004036877.1| - 3.2e-16 59.8 0.4 5.3e-16 59.0 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|313126607|ref|YP_004036877.1| - 4.1e-05 23.1 1.0 0.00045 19.6 0.7 2.1 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Peptidase_MA_2 PF13485.1 gi|313126608|ref|YP_004036878.1| - 2.3e-09 37.3 0.1 5e-09 36.2 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M61 PF05299.7 gi|313126608|ref|YP_004036878.1| - 0.0073 16.2 0.6 0.064 13.2 0.0 2.3 1 1 1 2 2 2 1 M61 glycyl aminopeptidase Peptidase_M1 PF01433.15 gi|313126608|ref|YP_004036878.1| - 0.012 14.6 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M1 GRAS PF03514.9 gi|313126608|ref|YP_004036878.1| - 0.015 14.0 0.0 0.023 13.4 0.0 1.1 1 0 0 1 1 1 0 GRAS domain family Lactamase_B PF00753.22 gi|313126609|ref|YP_004036879.1| - 2.9e-23 82.5 7.8 2.9e-23 82.5 5.4 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|313126609|ref|YP_004036879.1| - 2.1e-09 37.7 0.0 3.6e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|313126609|ref|YP_004036879.1| - 0.004 16.7 0.0 0.029 13.8 0.0 2.1 1 1 0 2 2 2 1 Beta-lactamase superfamily domain DUF4341 PF14241.1 gi|313126610|ref|YP_004036880.1| - 1.9e-16 59.4 2.9 1.9e-16 59.4 2.0 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|313126610|ref|YP_004036880.1| - 1.3e-09 37.8 7.1 1.3e-09 37.8 4.9 3.5 4 0 0 4 4 4 2 Sulphur transport UNC-93 PF05978.11 gi|313126610|ref|YP_004036880.1| - 0.78 9.2 5.2 0.28 10.6 0.4 2.2 2 1 0 2 2 2 0 Ion channel regulatory protein UNC-93 Sulf_transp PF04143.9 gi|313126611|ref|YP_004036881.1| - 3.5e-09 36.5 9.2 3.5e-09 36.5 6.4 3.0 3 0 0 3 3 3 2 Sulphur transport TrmB PF01978.14 gi|313126612|ref|YP_004036882.1| - 2.7e-17 62.2 0.0 3.6e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|313126612|ref|YP_004036882.1| - 2.2e-06 27.1 0.1 3.7e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|313126612|ref|YP_004036882.1| - 2.2e-06 27.7 0.0 2.8e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.2 gi|313126612|ref|YP_004036882.1| - 9.5e-05 21.9 0.1 0.00014 21.4 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313126612|ref|YP_004036882.1| - 9.8e-05 21.9 0.0 0.00021 20.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313126612|ref|YP_004036882.1| - 0.00037 20.0 0.0 0.00051 19.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|313126612|ref|YP_004036882.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313126612|ref|YP_004036882.1| - 0.0084 16.4 0.1 0.016 15.5 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|313126612|ref|YP_004036882.1| - 0.013 15.2 0.3 0.028 14.1 0.2 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family RuvB_C PF05491.8 gi|313126612|ref|YP_004036882.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_24 PF13412.1 gi|313126612|ref|YP_004036882.1| - 0.025 13.9 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma54_DBD PF04552.8 gi|313126612|ref|YP_004036882.1| - 0.033 13.7 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain GntR PF00392.16 gi|313126612|ref|YP_004036882.1| - 0.033 13.6 0.2 0.063 12.7 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family 2OG-Fe_Oxy_2 PF10014.4 gi|313126612|ref|YP_004036882.1| - 0.038 13.3 0.1 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase Dimerisation PF08100.6 gi|313126612|ref|YP_004036882.1| - 0.043 13.6 0.0 0.093 12.5 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain HTH_23 PF13384.1 gi|313126612|ref|YP_004036882.1| - 0.051 13.2 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|313126612|ref|YP_004036882.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|313126612|ref|YP_004036882.1| - 0.095 12.8 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix UMPH-1 PF05822.7 gi|313126612|ref|YP_004036882.1| - 0.11 11.7 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) PqqD PF05402.7 gi|313126612|ref|YP_004036882.1| - 0.6 10.1 2.3 49 4.0 0.2 3.0 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) NOB1_Zn_bind PF08772.6 gi|313126613|ref|YP_004036883.1| - 0.0047 16.7 1.0 0.96 9.3 0.1 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|313126613|ref|YP_004036883.1| - 0.036 13.8 1.3 0.054 13.3 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon Response_reg PF00072.19 gi|313126614|ref|YP_004036884.1| - 1.1e-16 60.8 0.0 1.2e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.7 gi|313126615|ref|YP_004036885.1| - 1.9e-19 68.9 0.0 3.8e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|313126615|ref|YP_004036885.1| - 3.2e-15 56.1 1.1 7.7e-15 54.8 0.7 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|313126615|ref|YP_004036885.1| - 5.1e-09 36.7 1.2 2e-08 34.8 0.1 2.5 2 0 0 2 2 2 1 GAF domain HalX PF08663.5 gi|313126615|ref|YP_004036885.1| - 0.00021 21.2 4.1 0.00047 20.0 1.9 2.4 2 0 0 2 2 2 1 HalX domain GAF PF01590.21 gi|313126615|ref|YP_004036885.1| - 0.00057 20.0 0.0 0.0013 18.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|313126615|ref|YP_004036885.1| - 0.00068 19.7 0.0 0.0022 18.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain Nucleo_LEF-12 PF06256.6 gi|313126615|ref|YP_004036885.1| - 0.0014 18.4 0.7 0.0029 17.4 0.5 1.4 1 0 0 1 1 1 1 Nucleopolyhedrovirus LEF-12 protein Sigma70_r4 PF04545.11 gi|313126615|ref|YP_004036885.1| - 0.014 14.6 0.0 0.066 12.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 DUF134 PF02001.11 gi|313126615|ref|YP_004036885.1| - 0.12 12.3 0.0 0.33 10.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 Noelin-1 PF12308.3 gi|313126615|ref|YP_004036885.1| - 0.28 11.0 3.7 1.9 8.3 1.2 2.4 2 0 0 2 2 2 0 Neurogenesis glycoprotein PAS_9 PF13426.1 gi|313126616|ref|YP_004036886.1| - 2.4e-45 153.1 0.1 2.5e-18 66.3 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|313126616|ref|YP_004036886.1| - 5.3e-41 139.0 9.8 2.1e-17 63.1 0.0 4.0 5 0 0 5 5 4 3 PAS fold PAS PF00989.19 gi|313126616|ref|YP_004036886.1| - 1.3e-25 89.3 0.2 1.9e-09 37.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|313126616|ref|YP_004036886.1| - 7.7e-20 70.6 0.0 2.4e-19 69.1 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|313126616|ref|YP_004036886.1| - 1.1e-12 48.7 0.0 3e-12 47.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|313126616|ref|YP_004036886.1| - 6.4e-09 35.6 0.0 1.7e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|313126616|ref|YP_004036886.1| - 1e-08 34.6 0.0 0.029 14.2 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|313126616|ref|YP_004036886.1| - 1.8e-05 24.6 0.2 0.18 11.8 0.0 4.7 3 2 1 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|313126616|ref|YP_004036886.1| - 0.00022 21.4 0.0 0.24 11.6 0.0 3.5 3 0 0 3 3 3 1 PAS domain GAF PF01590.21 gi|313126616|ref|YP_004036886.1| - 0.00056 20.0 0.1 0.0015 18.6 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|313126616|ref|YP_004036886.1| - 0.001 19.1 4.5 0.0093 16.0 0.1 3.6 3 1 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.1 gi|313126616|ref|YP_004036886.1| - 0.003 17.2 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HpaB PF03241.8 gi|313126616|ref|YP_004036886.1| - 0.037 12.8 0.0 0.065 12.0 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal UPF0058 PF01893.11 gi|313126617|ref|YP_004036887.1| - 1.9e-10 40.6 0.0 2e-10 40.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 MutS_V PF00488.16 gi|313126618|ref|YP_004036888.1| - 1.9e-09 37.2 0.0 3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.1 gi|313126618|ref|YP_004036888.1| - 0.0027 17.6 0.0 0.0065 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|313126618|ref|YP_004036888.1| - 0.0056 16.6 0.1 0.021 14.7 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|313126618|ref|YP_004036888.1| - 0.015 15.2 0.0 0.047 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|313126618|ref|YP_004036888.1| - 0.02 14.9 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif AAA_29 PF13555.1 gi|313126618|ref|YP_004036888.1| - 0.042 13.3 0.1 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|313126618|ref|YP_004036888.1| - 0.067 12.6 1.8 0.69 9.2 0.0 2.8 2 2 1 3 3 3 0 AAA-like domain AAA_23 PF13476.1 gi|313126618|ref|YP_004036888.1| - 0.26 11.5 0.0 0.58 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain OrfB_IS605 PF01385.14 gi|313126619|ref|YP_004036889.1| - 1.1e-42 146.0 0.0 1.4e-42 145.6 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313126619|ref|YP_004036889.1| - 2.3e-23 81.6 1.7 4.9e-23 80.5 1.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain VCBS PF13517.1 gi|313126621|ref|YP_004036891.1| - 8.9e-22 77.2 13.2 1.5e-08 34.8 0.3 5.2 3 1 2 5 5 5 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella UnbV_ASPIC PF07593.7 gi|313126621|ref|YP_004036891.1| - 1.7e-16 59.6 0.0 3.6e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 ASPIC and UnbV FG-GAP PF01839.18 gi|313126621|ref|YP_004036891.1| - 5.7e-10 38.5 17.7 0.011 15.4 0.3 5.5 5 0 0 5 5 5 4 FG-GAP repeat EF-hand_1 PF00036.27 gi|313126621|ref|YP_004036891.1| - 1.3 8.4 4.5 28 4.3 0.1 3.6 4 0 0 4 4 4 0 EF hand EF-hand_5 PF13202.1 gi|313126621|ref|YP_004036891.1| - 9.5 5.7 8.5 5.7 6.4 0.0 3.6 4 0 0 4 4 4 0 EF hand zf-FCS PF06467.9 gi|313126622|ref|YP_004036892.1| - 0.021 14.4 3.1 0.081 12.5 2.1 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|313126622|ref|YP_004036892.1| - 0.024 13.9 1.7 0.1 11.8 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF581) zf-PARP PF00645.13 gi|313126622|ref|YP_004036892.1| - 0.038 14.2 0.2 0.043 14.0 0.2 1.1 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region DUF329 PF03884.9 gi|313126622|ref|YP_004036892.1| - 0.056 13.0 3.1 0.62 9.6 2.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF329) RPAP2_Rtr1 PF04181.8 gi|313126622|ref|YP_004036892.1| - 0.13 12.3 1.9 0.17 12.0 1.3 1.3 1 1 0 1 1 1 0 Rtr1/RPAP2 family DUF2116 PF09889.4 gi|313126622|ref|YP_004036892.1| - 1.1 9.1 3.2 0.83 9.5 0.3 1.9 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Helicase_C_2 PF13307.1 gi|313126623|ref|YP_004036893.1| - 2e-27 96.1 0.0 4.5e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|313126623|ref|YP_004036893.1| - 1.1e-10 41.2 0.0 2.7e-10 39.9 0.0 1.7 1 1 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|313126623|ref|YP_004036893.1| - 9.5e-05 22.0 0.0 0.00034 20.3 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|313126623|ref|YP_004036893.1| - 0.00016 20.9 0.0 0.0004 19.6 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein ResIII PF04851.10 gi|313126623|ref|YP_004036893.1| - 0.00076 19.3 0.0 0.0054 16.5 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|313126623|ref|YP_004036893.1| - 0.0017 17.8 0.0 0.32 10.4 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|313126623|ref|YP_004036893.1| - 0.011 14.7 0.0 0.089 11.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|313126623|ref|YP_004036893.1| - 0.023 14.3 0.0 0.25 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Peptidase_S8 PF00082.17 gi|313126624|ref|YP_004036894.1| - 3.7e-15 55.8 9.9 3.3e-09 36.3 1.7 2.2 1 1 0 2 2 2 2 Subtilase family HTH_20 PF12840.2 gi|313126625|ref|YP_004036895.1| - 2.3e-11 43.3 0.2 3.7e-11 42.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313126625|ref|YP_004036895.1| - 6.7e-06 25.6 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|313126625|ref|YP_004036895.1| - 4.6e-05 23.0 0.0 9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313126625|ref|YP_004036895.1| - 5.6e-05 22.4 0.0 8.5e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313126625|ref|YP_004036895.1| - 0.0005 19.6 0.1 0.00091 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|313126625|ref|YP_004036895.1| - 0.00079 19.5 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator Phage_rep_org_N PF09681.5 gi|313126625|ref|YP_004036895.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|313126625|ref|YP_004036895.1| - 0.029 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|313126625|ref|YP_004036895.1| - 0.053 13.4 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.7 gi|313126625|ref|YP_004036895.1| - 0.054 13.6 0.4 0.14 12.3 0.0 1.8 2 0 0 2 2 2 0 FaeA-like protein HTH_27 PF13463.1 gi|313126625|ref|YP_004036895.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|313126625|ref|YP_004036895.1| - 0.13 11.8 0.0 0.27 10.8 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain MFS_1 PF07690.11 gi|313126626|ref|YP_004036896.1| - 1e-36 126.3 71.1 5.5e-32 110.8 28.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|313126626|ref|YP_004036896.1| - 2.8e-05 22.7 19.5 2.8e-05 22.7 13.5 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein Carb_kinase PF01256.12 gi|313126627|ref|YP_004036897.1| - 3.9e-51 173.6 1.3 6.4e-51 172.9 0.9 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|313126627|ref|YP_004036897.1| - 1.1e-41 142.3 1.1 1.1e-41 142.3 0.8 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|313126627|ref|YP_004036897.1| - 1.7e-07 30.6 0.1 3.2e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family GYD PF08734.6 gi|313126627|ref|YP_004036897.1| - 0.58 9.9 3.5 2.3 8.0 0.1 2.8 3 0 0 3 3 3 0 GYD domain MoaC PF01967.16 gi|313126628|ref|YP_004036898.1| - 7.2e-45 151.9 1.6 8.4e-45 151.7 1.1 1.0 1 0 0 1 1 1 1 MoaC family MMR_HSR1 PF01926.18 gi|313126630|ref|YP_004036900.1| - 5.9e-19 68.1 0.0 2.1e-18 66.3 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|313126630|ref|YP_004036900.1| - 3.2e-11 43.1 0.0 7.1e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.22 gi|313126630|ref|YP_004036900.1| - 5.8e-11 42.1 0.0 1.6e-10 40.7 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|313126630|ref|YP_004036900.1| - 1.9e-05 24.2 0.2 0.0013 18.2 0.0 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|313126630|ref|YP_004036900.1| - 0.00038 19.7 0.0 0.56 9.4 0.0 2.8 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_18 PF13238.1 gi|313126630|ref|YP_004036900.1| - 0.00057 20.2 0.0 0.0024 18.1 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|313126630|ref|YP_004036900.1| - 0.0027 18.5 1.7 0.016 16.0 0.0 2.7 2 2 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|313126630|ref|YP_004036900.1| - 0.009 15.5 0.0 0.76 9.2 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|313126630|ref|YP_004036900.1| - 0.0096 16.4 0.0 0.033 14.6 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|313126630|ref|YP_004036900.1| - 0.01 15.5 0.0 0.041 13.5 0.0 2.2 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|313126630|ref|YP_004036900.1| - 0.022 14.8 0.0 0.065 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|313126630|ref|YP_004036900.1| - 0.03 13.5 0.3 10 5.3 0.0 2.6 2 1 1 3 3 3 0 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|313126630|ref|YP_004036900.1| - 0.083 12.4 0.0 7.9 5.9 0.0 2.3 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.1 gi|313126630|ref|YP_004036900.1| - 0.51 10.6 3.6 24 5.1 0.0 2.2 1 1 1 2 2 2 0 AAA domain FUN14 PF04930.10 gi|313126631|ref|YP_004036901.1| - 2.6e-18 66.1 3.2 3.1e-18 65.8 2.2 1.0 1 0 0 1 1 1 1 FUN14 family Tmemb_14 PF03647.8 gi|313126631|ref|YP_004036901.1| - 1.6 9.1 4.8 1 9.7 0.2 2.2 2 0 0 2 2 2 0 Transmembrane proteins 14C ATPase_gene1 PF09527.5 gi|313126631|ref|YP_004036901.1| - 3.8 7.3 6.3 3.1 7.6 1.8 2.3 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) SBDS PF01172.13 gi|313126632|ref|YP_004036902.1| - 1.6e-24 85.5 0.0 2.8e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|313126632|ref|YP_004036902.1| - 1.1e-19 70.3 0.0 1.6e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain YbjN PF10722.4 gi|313126632|ref|YP_004036902.1| - 0.38 10.7 2.3 6.5 6.7 0.1 2.4 2 1 0 2 2 2 0 Putative bacterial sensory transduction regulator DUF1470 PF07336.6 gi|313126632|ref|YP_004036902.1| - 1.5 9.1 5.0 19 5.6 0.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) Thioredoxin PF00085.15 gi|313126633|ref|YP_004036903.1| - 2.5e-28 97.8 0.0 2.7e-28 97.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|313126633|ref|YP_004036903.1| - 1.1e-09 38.4 0.0 9.7e-09 35.4 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|313126633|ref|YP_004036903.1| - 3.7e-06 26.8 0.0 6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|313126633|ref|YP_004036903.1| - 8.8e-05 22.5 0.0 0.00045 20.2 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|313126633|ref|YP_004036903.1| - 0.0028 17.4 0.1 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|313126633|ref|YP_004036903.1| - 0.0034 16.9 0.0 0.0043 16.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|313126633|ref|YP_004036903.1| - 0.0045 16.4 0.0 0.0056 16.2 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.16 gi|313126633|ref|YP_004036903.1| - 0.0082 15.8 0.0 0.01 15.4 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313126633|ref|YP_004036903.1| - 0.026 14.0 0.1 0.049 13.1 0.0 1.6 1 1 0 1 1 1 0 Redoxin Glutaredoxin PF00462.19 gi|313126633|ref|YP_004036903.1| - 0.043 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_4 PF13462.1 gi|313126633|ref|YP_004036903.1| - 0.11 12.4 0.1 0.96 9.4 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin RibD_C PF01872.12 gi|313126634|ref|YP_004036904.1| - 6.8e-51 172.7 0.2 7.5e-51 172.5 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Lactamase_B_2 PF12706.2 gi|313126634|ref|YP_004036904.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Glycos_transf_1 PF00534.15 gi|313126635|ref|YP_004036905.1| - 5.2e-29 100.8 0.0 1e-28 99.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313126635|ref|YP_004036905.1| - 7.8e-18 65.1 0.0 1.4e-17 64.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|313126635|ref|YP_004036905.1| - 2e-15 57.1 0.0 4.9e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313126635|ref|YP_004036905.1| - 5.6e-09 35.9 0.0 9.3e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|313126635|ref|YP_004036905.1| - 7.3e-06 25.6 0.0 0.0038 16.7 0.0 2.6 1 1 1 2 2 2 2 Starch synthase catalytic domain Usp PF00582.21 gi|313126637|ref|YP_004036907.1| - 3.8e-23 82.2 0.8 4.2e-23 82.0 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF1205 PF06722.7 gi|313126637|ref|YP_004036907.1| - 0.012 15.8 2.3 1.4 9.1 0.0 2.4 2 1 0 3 3 3 0 Protein of unknown function (DUF1205) Metallophos_2 PF12850.2 gi|313126641|ref|YP_004036911.1| - 2.1e-06 27.6 0.0 2.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313126641|ref|YP_004036911.1| - 7.5e-06 25.4 0.3 2.7e-05 23.6 0.0 1.7 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase MBOAT PF03062.14 gi|313126642|ref|YP_004036912.1| - 0.0054 15.8 0.2 0.0061 15.7 0.2 1.0 1 0 0 1 1 1 1 MBOAT, membrane-bound O-acyltransferase family DUF4203 PF13886.1 gi|313126642|ref|YP_004036912.1| - 0.0071 15.8 1.1 0.0076 15.7 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4203) DEAD_assoc PF08494.6 gi|313126643|ref|YP_004036913.1| - 1.6e-39 135.5 0.0 4.1e-39 134.2 0.0 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|313126643|ref|YP_004036913.1| - 2.5e-32 111.7 0.0 2.9e-31 108.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|313126643|ref|YP_004036913.1| - 4.4e-18 64.9 0.1 5.9e-17 61.3 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|313126643|ref|YP_004036913.1| - 4.6e-08 33.1 0.0 9.1e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|313126643|ref|YP_004036913.1| - 5.1e-05 22.2 0.0 0.00011 21.1 0.0 1.5 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|313126643|ref|YP_004036913.1| - 0.00059 19.5 0.1 0.0038 16.9 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|313126643|ref|YP_004036913.1| - 0.0039 16.6 3.3 0.0076 15.6 0.3 2.8 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|313126643|ref|YP_004036913.1| - 0.029 14.4 0.0 0.27 11.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.16 gi|313126643|ref|YP_004036913.1| - 0.036 13.3 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Zn-ribbon_8 PF09723.5 gi|313126643|ref|YP_004036913.1| - 0.05 13.5 1.3 0.12 12.3 0.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Methyltransf_11 PF08241.7 gi|313126644|ref|YP_004036914.1| - 1.6e-09 38.1 0.1 2.3e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313126644|ref|YP_004036914.1| - 3.2e-05 24.4 0.1 5.2e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126644|ref|YP_004036914.1| - 0.00043 19.9 0.0 0.00054 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313126644|ref|YP_004036914.1| - 0.0089 15.4 0.1 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|313126644|ref|YP_004036914.1| - 0.017 15.4 0.2 0.03 14.6 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313126644|ref|YP_004036914.1| - 0.018 15.4 0.0 0.026 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126644|ref|YP_004036914.1| - 0.029 14.0 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|313126644|ref|YP_004036914.1| - 0.081 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|313126644|ref|YP_004036914.1| - 0.17 11.9 1.0 0.29 11.1 0.7 1.4 1 1 0 1 1 1 0 Methyltransferase domain AAA PF00004.24 gi|313126645|ref|YP_004036915.1| - 2.5e-93 309.1 0.0 3.8e-46 156.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|313126645|ref|YP_004036915.1| - 5.5e-22 77.5 0.4 2e-21 75.7 0.3 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|313126645|ref|YP_004036915.1| - 3.9e-14 52.2 0.1 1.6e-05 24.0 0.0 3.5 4 0 0 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|313126645|ref|YP_004036915.1| - 1.2e-13 51.3 0.0 5.7e-06 26.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|313126645|ref|YP_004036915.1| - 1.4e-12 47.6 0.0 2.8e-05 24.0 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313126645|ref|YP_004036915.1| - 1.4e-12 47.9 3.9 3.5e-05 23.8 1.3 3.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.1 gi|313126645|ref|YP_004036915.1| - 1.6e-11 44.2 0.0 0.00017 21.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|313126645|ref|YP_004036915.1| - 1.8e-11 44.8 0.3 0.00021 22.1 0.0 3.3 3 1 1 4 4 2 2 AAA domain AAA_22 PF13401.1 gi|313126645|ref|YP_004036915.1| - 2.1e-11 44.0 0.6 0.00077 19.6 0.1 4.0 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|313126645|ref|YP_004036915.1| - 2.7e-11 43.3 0.6 0.00094 18.9 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|313126645|ref|YP_004036915.1| - 3.2e-10 39.4 0.0 0.00068 18.7 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.1 gi|313126645|ref|YP_004036915.1| - 6.3e-10 38.6 5.7 0.00034 20.2 0.0 3.8 3 0 0 3 3 3 2 Part of AAA domain TIP49 PF06068.8 gi|313126645|ref|YP_004036915.1| - 1.3e-09 37.2 0.0 0.00033 19.4 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|313126645|ref|YP_004036915.1| - 5.5e-08 32.4 0.0 0.0095 15.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|313126645|ref|YP_004036915.1| - 1.4e-07 31.6 0.1 0.015 15.2 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|313126645|ref|YP_004036915.1| - 9.6e-07 29.1 0.0 0.07 13.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|313126645|ref|YP_004036915.1| - 1.3e-06 27.9 0.1 0.096 12.1 0.0 3.8 3 2 1 4 4 4 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|313126645|ref|YP_004036915.1| - 1.9e-06 27.1 0.6 0.061 12.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|313126645|ref|YP_004036915.1| - 4.4e-06 27.0 0.0 0.046 14.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter RNA_helicase PF00910.17 gi|313126645|ref|YP_004036915.1| - 5.1e-06 26.6 0.0 0.074 13.2 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.6 gi|313126645|ref|YP_004036915.1| - 6.8e-06 25.7 0.0 0.071 12.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|313126645|ref|YP_004036915.1| - 8.3e-06 25.5 1.5 0.34 10.5 0.0 3.9 4 0 0 4 4 4 2 NACHT domain Sigma54_activ_2 PF14532.1 gi|313126645|ref|YP_004036915.1| - 1.4e-05 25.2 0.0 0.073 13.1 0.0 2.9 2 1 1 3 3 2 2 Sigma-54 interaction domain CPT PF07931.7 gi|313126645|ref|YP_004036915.1| - 1.7e-05 24.5 0.2 0.55 9.8 0.0 3.3 3 0 0 3 3 3 2 Chloramphenicol phosphotransferase-like protein PhoH PF02562.11 gi|313126645|ref|YP_004036915.1| - 2.8e-05 23.4 0.2 0.23 10.6 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.1 gi|313126645|ref|YP_004036915.1| - 3.8e-05 23.1 8.5 0.71 9.2 0.1 4.4 2 2 2 4 4 4 2 AAA domain DUF2075 PF09848.4 gi|313126645|ref|YP_004036915.1| - 8.7e-05 21.6 0.0 0.16 10.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|313126645|ref|YP_004036915.1| - 9.7e-05 22.0 0.0 0.47 9.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|313126645|ref|YP_004036915.1| - 0.00012 21.7 0.0 0.58 9.7 0.0 2.9 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.12 gi|313126645|ref|YP_004036915.1| - 0.00013 21.5 0.5 0.00042 19.8 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 Parvo_NS1 PF01057.12 gi|313126645|ref|YP_004036915.1| - 0.00015 20.7 0.0 0.44 9.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|313126645|ref|YP_004036915.1| - 0.00052 18.9 0.0 0.79 8.5 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain ResIII PF04851.10 gi|313126645|ref|YP_004036915.1| - 0.00062 19.6 0.0 0.73 9.6 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|313126645|ref|YP_004036915.1| - 0.00081 18.5 0.0 1.1 8.3 0.0 2.9 3 0 0 3 3 3 2 KaiC UPF0079 PF02367.12 gi|313126645|ref|YP_004036915.1| - 0.00099 18.7 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF815 PF05673.8 gi|313126645|ref|YP_004036915.1| - 0.0015 17.5 0.0 1.6 7.5 0.0 2.8 3 0 0 3 3 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|313126645|ref|YP_004036915.1| - 0.0024 17.6 0.0 6.1 6.4 0.0 3.5 2 2 1 3 3 3 0 Archaeal ATPase NTPase_1 PF03266.10 gi|313126645|ref|YP_004036915.1| - 0.0034 17.0 0.7 3 7.5 0.1 3.7 3 2 0 3 3 3 1 NTPase SKI PF01202.17 gi|313126645|ref|YP_004036915.1| - 0.0038 17.0 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase Cytidylate_kin2 PF13189.1 gi|313126645|ref|YP_004036915.1| - 0.0045 16.9 0.0 0.23 11.3 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family Viral_helicase1 PF01443.13 gi|313126645|ref|YP_004036915.1| - 0.0052 16.3 0.0 2.7 7.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Torsin PF06309.6 gi|313126645|ref|YP_004036915.1| - 0.007 16.2 0.0 4.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin Tox-REase-2 PF15646.1 gi|313126645|ref|YP_004036915.1| - 0.018 14.8 0.2 0.11 12.4 0.2 2.2 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 2 T2SE PF00437.15 gi|313126645|ref|YP_004036915.1| - 0.029 13.2 0.2 2.4 6.9 0.0 2.5 2 1 0 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|313126645|ref|YP_004036915.1| - 0.043 13.3 3.4 4.4 6.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|313126645|ref|YP_004036915.1| - 0.055 12.9 0.0 4.6 6.6 0.0 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DAP3 PF10236.4 gi|313126645|ref|YP_004036915.1| - 0.055 12.4 0.0 4 6.2 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 KTI12 PF08433.5 gi|313126645|ref|YP_004036915.1| - 0.22 10.6 0.0 13 4.8 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DEAD PF00270.24 gi|313126645|ref|YP_004036915.1| - 0.25 10.8 1.5 36 3.8 0.0 3.6 2 2 0 4 4 4 0 DEAD/DEAH box helicase zf-C2H2_3 PF13878.1 gi|313126646|ref|YP_004036916.1| - 0.074 12.6 0.4 0.11 12.0 0.3 1.4 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO KTSC PF13619.1 gi|313126648|ref|YP_004036918.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 KTSC domain MaoC_dehydratas PF01575.14 gi|313126649|ref|YP_004036919.1| - 1.3e-17 63.2 0.0 1.6e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313126649|ref|YP_004036919.1| - 4.3e-07 29.7 0.1 6.8e-07 29.1 0.1 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|313126649|ref|YP_004036919.1| - 0.012 15.0 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain GHMP_kinases_N PF00288.21 gi|313126650|ref|YP_004036920.1| - 2e-11 43.7 1.1 2e-11 43.7 0.8 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|313126650|ref|YP_004036920.1| - 0.039 14.1 0.0 0.12 12.6 0.0 1.8 1 0 0 1 1 1 0 GHMP kinases C terminal CM_2 PF01817.16 gi|313126651|ref|YP_004036921.1| - 2.8e-16 59.3 4.2 3.3e-16 59.1 2.9 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Ribosomal_L29 PF00831.18 gi|313126651|ref|YP_004036921.1| - 0.097 12.3 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 Ribosomal L29 protein DivIC PF04977.10 gi|313126651|ref|YP_004036921.1| - 0.098 12.1 0.3 0.15 11.5 0.2 1.4 1 0 0 1 1 1 0 Septum formation initiator DUF1282 PF06930.7 gi|313126652|ref|YP_004036922.1| - 0.0097 15.5 0.9 0.011 15.4 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) EIID-AGA PF03613.9 gi|313126652|ref|YP_004036922.1| - 0.038 12.9 0.4 0.04 12.8 0.3 1.0 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF1834 PF08873.6 gi|313126652|ref|YP_004036922.1| - 0.087 12.4 0.1 0.087 12.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1834) PrgI PF12666.2 gi|313126652|ref|YP_004036922.1| - 0.14 12.2 0.7 0.14 12.3 0.5 1.1 1 0 0 1 1 1 0 PrgI family protein MtrC PF04211.8 gi|313126652|ref|YP_004036922.1| - 2.7 6.9 7.5 3.1 6.7 5.2 1.0 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C SurE PF01975.12 gi|313126653|ref|YP_004036923.1| - 1.1e-44 152.1 0.1 1.4e-44 151.7 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_12 PF08242.7 gi|313126654|ref|YP_004036924.1| - 1.3e-07 31.9 0.0 3e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126654|ref|YP_004036924.1| - 1.7e-07 31.0 0.0 4.1e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126654|ref|YP_004036924.1| - 8.2e-06 25.4 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|313126654|ref|YP_004036924.1| - 1.3e-05 24.4 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_18 PF12847.2 gi|313126654|ref|YP_004036924.1| - 3.4e-05 24.3 0.0 9.4e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126654|ref|YP_004036924.1| - 0.00028 21.2 0.0 0.00051 20.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313126654|ref|YP_004036924.1| - 0.0022 18.4 0.0 0.0071 16.8 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313126654|ref|YP_004036924.1| - 0.035 14.1 0.1 0.073 13.1 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain PALP PF00291.20 gi|313126654|ref|YP_004036924.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme PCMT PF01135.14 gi|313126654|ref|YP_004036924.1| - 0.17 11.4 0.2 4 6.9 0.0 2.7 2 1 1 3 3 3 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PDH PF02153.12 gi|313126655|ref|YP_004036925.1| - 3.5e-13 49.0 0.8 7.5e-12 44.6 0.5 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|313126655|ref|YP_004036925.1| - 0.0005 20.4 0.2 0.0023 18.3 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|313126655|ref|YP_004036925.1| - 0.0016 18.1 1.1 0.0075 15.9 0.0 2.4 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|313126655|ref|YP_004036925.1| - 0.016 15.3 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|313126655|ref|YP_004036925.1| - 0.017 15.6 2.9 0.064 13.7 0.1 2.8 2 2 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|313126655|ref|YP_004036925.1| - 0.018 14.8 0.6 0.042 13.6 0.0 1.9 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|313126655|ref|YP_004036925.1| - 0.018 14.4 0.0 0.043 13.2 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|313126655|ref|YP_004036925.1| - 0.026 14.5 0.0 0.19 11.6 0.0 2.3 2 1 0 2 2 2 0 TrkA-N domain adh_short PF00106.20 gi|313126656|ref|YP_004036926.1| - 2.4e-26 92.6 0.0 3e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313126656|ref|YP_004036926.1| - 9.5e-11 41.6 0.0 1.4e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|313126656|ref|YP_004036926.1| - 2.5e-08 33.9 0.0 3.1e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|313126656|ref|YP_004036926.1| - 0.00049 19.5 0.2 0.00092 18.7 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313126656|ref|YP_004036926.1| - 0.1 11.3 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family MGS PF02142.17 gi|313126656|ref|YP_004036926.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 MGS-like domain NAD_binding_10 PF13460.1 gi|313126656|ref|YP_004036926.1| - 0.11 12.4 1.6 1 9.3 1.1 2.3 1 1 0 1 1 1 0 NADH(P)-binding US22 PF02393.11 gi|313126657|ref|YP_004036927.1| - 0.00075 19.5 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 US22 like ATP-synt_10 PF05176.9 gi|313126657|ref|YP_004036927.1| - 0.013 14.7 0.0 0.019 14.2 0.0 1.6 1 1 0 1 1 1 0 ATP10 protein DUF4303 PF14136.1 gi|313126657|ref|YP_004036927.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) Peptidase_M24 PF00557.19 gi|313126658|ref|YP_004036928.1| - 4.3e-44 150.5 2.4 6e-44 150.1 1.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|313126658|ref|YP_004036928.1| - 2.3e-08 34.6 0.3 6e-08 33.2 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain EPSP_synthase PF00275.15 gi|313126659|ref|YP_004036929.1| - 1.3e-104 349.9 0.1 1.5e-104 349.7 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Chorismate_synt PF01264.16 gi|313126661|ref|YP_004036931.1| - 6.9e-126 419.3 0.0 7.9e-126 419.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase POR PF01558.13 gi|313126662|ref|YP_004036932.1| - 2.2e-50 170.9 0.0 4e-50 170.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.14 gi|313126662|ref|YP_004036932.1| - 3.9e-49 167.2 0.1 1.1e-48 165.8 0.1 1.7 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|313126662|ref|YP_004036932.1| - 8.6e-06 25.3 0.6 1.9e-05 24.2 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|313126663|ref|YP_004036933.1| - 1.8e-29 102.3 0.1 2.5e-29 101.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_24 PF13412.1 gi|313126664|ref|YP_004036934.1| - 1.5e-12 46.6 0.0 2.6e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|313126664|ref|YP_004036934.1| - 9.3e-10 38.0 0.0 1.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|313126664|ref|YP_004036934.1| - 1.2e-08 34.3 0.0 2.2e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313126664|ref|YP_004036934.1| - 6.9e-08 32.0 0.0 2.3e-07 30.3 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|313126664|ref|YP_004036934.1| - 4.1e-06 26.4 0.0 7e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313126664|ref|YP_004036934.1| - 5.3e-06 26.0 0.1 3.8e-05 23.2 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_DeoR PF08220.7 gi|313126664|ref|YP_004036934.1| - 7.2e-06 25.4 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|313126664|ref|YP_004036934.1| - 9.1e-06 25.2 0.0 2.1e-05 24.1 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.5 gi|313126664|ref|YP_004036934.1| - 1.1e-05 24.9 0.0 1.9e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|313126664|ref|YP_004036934.1| - 2.3e-05 23.9 0.0 4.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|313126664|ref|YP_004036934.1| - 2.9e-05 23.8 0.0 6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|313126664|ref|YP_004036934.1| - 0.00015 21.3 0.1 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|313126664|ref|YP_004036934.1| - 0.00016 21.7 0.0 0.00033 20.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|313126664|ref|YP_004036934.1| - 0.00023 21.2 0.0 0.00042 20.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|313126664|ref|YP_004036934.1| - 0.00037 20.4 0.0 0.00063 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|313126664|ref|YP_004036934.1| - 0.0027 17.8 0.0 0.0036 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.16 gi|313126664|ref|YP_004036934.1| - 0.0028 17.0 0.0 0.0062 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|313126664|ref|YP_004036934.1| - 0.0029 17.0 0.0 0.0074 15.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|313126664|ref|YP_004036934.1| - 0.004 16.7 0.0 0.0071 15.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.7 gi|313126664|ref|YP_004036934.1| - 0.0053 16.8 0.0 0.009 16.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_34 PF13601.1 gi|313126664|ref|YP_004036934.1| - 0.0056 16.6 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|313126664|ref|YP_004036934.1| - 0.0067 15.9 0.1 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_6 PF01418.12 gi|313126664|ref|YP_004036934.1| - 0.0069 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family LacI PF00356.16 gi|313126664|ref|YP_004036934.1| - 0.0083 15.7 0.0 0.026 14.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family TFIIE_alpha PF02002.12 gi|313126664|ref|YP_004036934.1| - 0.017 14.6 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit TetR_N PF00440.18 gi|313126664|ref|YP_004036934.1| - 0.033 13.8 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family DUF2250 PF10007.4 gi|313126664|ref|YP_004036934.1| - 0.041 13.7 0.0 0.067 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|313126664|ref|YP_004036934.1| - 0.045 14.0 0.0 0.077 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_1 PF01527.15 gi|313126664|ref|YP_004036934.1| - 0.055 13.4 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Transposase SLH PF00395.15 gi|313126664|ref|YP_004036934.1| - 0.089 12.5 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 S-layer homology domain HTH_CodY PF08222.6 gi|313126664|ref|YP_004036934.1| - 0.12 11.7 0.0 0.31 10.4 0.0 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain FeoC PF09012.5 gi|313126664|ref|YP_004036934.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator IMS PF00817.15 gi|313126665|ref|YP_004036935.1| - 2e-39 134.7 0.1 5.9e-39 133.2 0.0 1.7 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.3 gi|313126665|ref|YP_004036935.1| - 1.4e-16 60.5 0.0 3.2e-16 59.4 0.0 1.6 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|313126665|ref|YP_004036935.1| - 1.4e-07 31.1 0.0 3.4e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|313126665|ref|YP_004036935.1| - 2.4e-06 27.6 0.0 8e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|313126665|ref|YP_004036935.1| - 6.2e-05 22.4 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|313126665|ref|YP_004036935.1| - 0.033 14.1 0.0 0.079 12.8 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus DUF2408 PF10303.4 gi|313126665|ref|YP_004036935.1| - 0.17 11.9 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) Alpha_GJ PF03229.8 gi|313126665|ref|YP_004036935.1| - 1.1 9.5 7.3 20 5.5 2.3 2.6 2 0 0 2 2 2 0 Alphavirus glycoprotein J AAA_10 PF12846.2 gi|313126666|ref|YP_004036936.1| - 3.7e-19 69.3 0.1 6.6e-10 38.9 0.0 2.9 2 1 0 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|313126666|ref|YP_004036936.1| - 2.3e-13 50.5 0.5 6.8e-13 48.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 Med9 PF07544.8 gi|313126666|ref|YP_004036936.1| - 3.4e-05 23.4 4.9 0.0021 17.7 3.3 2.5 2 0 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 DUF853 PF05872.7 gi|313126666|ref|YP_004036936.1| - 0.0013 17.2 0.0 0.026 12.8 0.0 2.4 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TMF_DNA_bd PF12329.3 gi|313126666|ref|YP_004036936.1| - 0.002 17.8 4.8 0.002 17.8 3.3 1.7 2 0 0 2 2 1 1 TATA element modulatory factor 1 DNA binding FtsK_SpoIIIE PF01580.13 gi|313126666|ref|YP_004036936.1| - 0.0023 17.4 0.7 0.027 13.9 0.0 2.6 2 1 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|313126666|ref|YP_004036936.1| - 0.004 16.6 0.0 0.87 9.0 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_17 PF13207.1 gi|313126666|ref|YP_004036936.1| - 0.0045 17.7 0.3 0.04 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|313126666|ref|YP_004036936.1| - 0.0058 16.3 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|313126666|ref|YP_004036936.1| - 0.0063 15.9 0.1 0.013 14.9 0.0 1.6 2 0 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|313126666|ref|YP_004036936.1| - 0.019 14.6 0.0 0.055 13.1 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|313126666|ref|YP_004036936.1| - 0.027 13.8 0.0 0.082 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|313126666|ref|YP_004036936.1| - 0.035 12.7 0.0 0.09 11.3 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF4515 PF14988.1 gi|313126666|ref|YP_004036936.1| - 0.037 13.6 7.1 0.068 12.8 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) DUF2893 PF11459.3 gi|313126666|ref|YP_004036936.1| - 0.049 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknwon function (DUF2893) DUF3391 PF11871.3 gi|313126666|ref|YP_004036936.1| - 0.049 13.8 0.7 0.12 12.5 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) AAA_22 PF13401.1 gi|313126666|ref|YP_004036936.1| - 0.053 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF241 PF03087.9 gi|313126666|ref|YP_004036936.1| - 0.062 12.7 0.3 0.12 11.8 0.2 1.4 1 0 0 1 1 1 0 Arabidopsis protein of unknown function DUF3584 PF12128.3 gi|313126666|ref|YP_004036936.1| - 0.063 10.6 4.4 0.087 10.1 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.1 gi|313126666|ref|YP_004036936.1| - 0.088 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Atg14 PF10186.4 gi|313126666|ref|YP_004036936.1| - 0.093 11.6 1.4 0.14 11.1 1.0 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|313126666|ref|YP_004036936.1| - 0.11 12.0 3.6 0.23 11.0 2.5 1.4 1 0 0 1 1 1 0 IncA protein NTPase_1 PF03266.10 gi|313126666|ref|YP_004036936.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 NTPase APG6 PF04111.7 gi|313126666|ref|YP_004036936.1| - 0.16 11.0 0.9 0.25 10.3 0.6 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4613 PF15390.1 gi|313126666|ref|YP_004036936.1| - 0.16 10.1 0.1 0.22 9.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) DivIC PF04977.10 gi|313126666|ref|YP_004036936.1| - 0.19 11.2 4.2 0.46 9.9 2.9 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF641 PF04859.7 gi|313126666|ref|YP_004036936.1| - 0.31 10.8 4.9 0.51 10.0 2.2 2.2 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) AAA_13 PF13166.1 gi|313126666|ref|YP_004036936.1| - 0.32 9.3 2.9 0.54 8.6 2.0 1.3 1 0 0 1 1 1 0 AAA domain DUF4407 PF14362.1 gi|313126666|ref|YP_004036936.1| - 0.82 8.5 4.9 1.3 7.8 3.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Med4 PF10018.4 gi|313126666|ref|YP_004036936.1| - 0.9 8.9 9.7 0.17 11.2 3.9 1.8 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 ATG16 PF08614.6 gi|313126666|ref|YP_004036936.1| - 1.8 8.3 9.6 0.076 12.8 2.2 1.9 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) TIM PF00121.13 gi|313126667|ref|YP_004036937.1| - 1.8e-22 79.6 0.1 3.4e-15 55.7 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|313126667|ref|YP_004036937.1| - 0.0029 16.7 1.2 0.0029 16.7 0.8 2.3 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|313126667|ref|YP_004036937.1| - 0.011 14.7 0.0 0.023 13.7 0.0 1.7 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.1 gi|313126667|ref|YP_004036937.1| - 0.032 13.9 2.4 0.22 11.2 0.2 2.5 2 0 0 2 2 2 0 HAD-hyrolase-like Pax2_C PF12403.3 gi|313126667|ref|YP_004036937.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Paired-box protein 2 C terminal FMN_dh PF01070.13 gi|313126667|ref|YP_004036937.1| - 0.29 9.9 6.2 0.51 9.1 4.0 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase NMO PF03060.10 gi|313126667|ref|YP_004036937.1| - 8.3 5.4 12.5 3.3 6.7 4.8 2.1 1 1 1 2 2 2 0 Nitronate monooxygenase HTH_3 PF01381.17 gi|313126669|ref|YP_004036939.1| - 3.9e-10 39.4 0.2 7.6e-10 38.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|313126669|ref|YP_004036939.1| - 1e-09 38.3 0.2 1.8e-09 37.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313126669|ref|YP_004036939.1| - 3.8e-08 33.4 0.0 7.2e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|313126669|ref|YP_004036939.1| - 1.3e-05 24.6 0.5 2e-05 24.0 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Macoilin PF09726.4 gi|313126669|ref|YP_004036939.1| - 0.018 13.3 8.1 0.02 13.2 5.6 1.0 1 0 0 1 1 1 0 Transmembrane protein Pox_A12 PF04651.8 gi|313126669|ref|YP_004036939.1| - 0.026 14.6 5.7 0.04 14.0 4.0 1.3 1 0 0 1 1 1 0 Poxvirus A12 protein DUF3775 PF12616.3 gi|313126669|ref|YP_004036939.1| - 0.031 14.0 0.1 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3775) IATP PF04568.7 gi|313126669|ref|YP_004036939.1| - 0.051 13.6 1.7 0.098 12.6 1.2 1.6 1 0 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP RAP1 PF07218.6 gi|313126669|ref|YP_004036939.1| - 0.059 11.4 7.3 0.055 11.5 5.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Tmemb_cc2 PF10267.4 gi|313126669|ref|YP_004036939.1| - 0.078 11.5 6.1 0.099 11.2 4.2 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein T4SS PF07996.6 gi|313126669|ref|YP_004036939.1| - 0.26 11.1 4.1 0.37 10.6 2.8 1.2 1 0 0 1 1 1 0 Type IV secretion system proteins Period_C PF12114.3 gi|313126669|ref|YP_004036939.1| - 1.6 8.2 13.8 2.3 7.8 9.6 1.3 1 0 0 1 1 1 0 Period protein 2/3C-terminal region Sporozoite_P67 PF05642.6 gi|313126669|ref|YP_004036939.1| - 2.6 5.7 11.7 3.4 5.3 8.1 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Corona_nucleoca PF00937.13 gi|313126669|ref|YP_004036939.1| - 4.3 6.2 8.6 4.9 5.9 6.0 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein SR-25 PF10500.4 gi|313126669|ref|YP_004036939.1| - 4.5 6.6 26.2 15 4.9 18.1 1.7 1 1 0 1 1 1 0 Nuclear RNA-splicing-associated protein Secretin_N_2 PF07655.8 gi|313126669|ref|YP_004036939.1| - 4.6 7.6 19.2 3.5 8.0 11.5 1.9 2 0 0 2 2 2 0 Secretin N-terminal domain Apt1 PF10351.4 gi|313126669|ref|YP_004036939.1| - 5.4 5.7 9.6 6.7 5.4 6.6 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain CDP-OH_P_transf PF01066.16 gi|313126670|ref|YP_004036940.1| - 1.8e-11 44.2 10.6 4.3e-11 43.0 7.3 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|313126671|ref|YP_004036941.1| - 2.2e-24 86.2 0.1 2.8e-24 85.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313126671|ref|YP_004036941.1| - 6.2e-17 62.5 0.7 8.4e-17 62.1 0.5 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|313126671|ref|YP_004036941.1| - 7.3e-08 32.4 0.2 0.0012 18.7 0.1 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_33 PF13671.1 gi|313126671|ref|YP_004036941.1| - 8.1e-08 32.2 0.4 0.012 15.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|313126671|ref|YP_004036941.1| - 1.9e-05 24.3 0.1 5.9e-05 22.7 0.0 1.9 2 1 0 2 2 2 1 Part of AAA domain AAA_5 PF07728.9 gi|313126671|ref|YP_004036941.1| - 0.00019 21.1 0.0 0.00033 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|313126671|ref|YP_004036941.1| - 0.0003 20.7 0.9 0.0003 20.7 0.6 2.3 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|313126671|ref|YP_004036941.1| - 0.00035 20.7 0.1 0.001 19.2 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313126671|ref|YP_004036941.1| - 0.00082 19.5 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313126671|ref|YP_004036941.1| - 0.0022 18.0 0.8 0.0035 17.3 0.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|313126671|ref|YP_004036941.1| - 0.0086 15.7 0.1 0.026 14.2 0.0 1.8 2 0 0 2 2 2 1 NTPase dNK PF01712.14 gi|313126671|ref|YP_004036941.1| - 0.0099 15.8 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase Thymidylate_kin PF02223.12 gi|313126671|ref|YP_004036941.1| - 0.013 14.9 0.2 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|313126671|ref|YP_004036941.1| - 0.017 14.2 0.0 0.06 12.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin DUF2075 PF09848.4 gi|313126671|ref|YP_004036941.1| - 0.085 11.8 0.0 0.13 11.2 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|313126671|ref|YP_004036941.1| - 0.29 10.6 3.3 0.27 10.7 0.3 2.2 1 1 1 2 2 2 0 AAA domain CoaE PF01121.15 gi|313126671|ref|YP_004036941.1| - 0.32 10.3 2.0 1.4 8.2 0.1 2.4 1 1 2 3 3 3 0 Dephospho-CoA kinase KaiC PF06745.8 gi|313126671|ref|YP_004036941.1| - 0.36 9.9 1.7 0.81 8.7 0.4 1.9 1 1 1 2 2 2 0 KaiC cobW PF02492.14 gi|313126671|ref|YP_004036941.1| - 0.48 9.8 2.7 1.8 7.9 1.9 2.0 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|313126671|ref|YP_004036941.1| - 1.3 8.4 4.1 5.1 6.4 2.0 2.6 1 1 0 2 2 2 0 AAA domain DUF1470 PF07336.6 gi|313126671|ref|YP_004036941.1| - 3.6 7.9 11.4 2.3 8.5 6.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) Aminotran_1_2 PF00155.16 gi|313126672|ref|YP_004036942.1| - 1.1e-63 215.4 0.0 1.2e-63 215.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|313126672|ref|YP_004036942.1| - 0.001 17.8 0.1 0.0024 16.5 0.0 1.5 2 0 0 2 2 2 1 Allinase FTR PF01913.13 gi|313126672|ref|YP_004036942.1| - 0.0019 17.8 0.2 0.0037 16.9 0.1 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Cys_Met_Meta_PP PF01053.15 gi|313126672|ref|YP_004036942.1| - 0.0053 15.0 0.0 0.0096 14.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.6 gi|313126672|ref|YP_004036942.1| - 0.15 10.3 0.0 0.23 9.7 0.0 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase PBP_like_2 PF12849.2 gi|313126673|ref|YP_004036943.1| - 3.8e-17 62.6 0.1 4.8e-17 62.3 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|313126673|ref|YP_004036943.1| - 1.2e-08 34.8 0.2 3.9e-08 33.2 0.1 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|313126673|ref|YP_004036943.1| - 1.2e-07 31.0 0.2 1.7e-07 30.5 0.2 1.2 1 0 0 1 1 1 1 LysR substrate binding domain PBP_like PF12727.2 gi|313126673|ref|YP_004036943.1| - 0.0074 15.2 0.1 0.02 13.8 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain GMC_oxred_C PF05199.8 gi|313126674|ref|YP_004036944.1| - 2.6e-24 86.1 0.7 1e-23 84.2 0.5 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|313126674|ref|YP_004036944.1| - 2.2e-13 50.0 0.0 5.3e-13 48.7 0.0 1.7 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|313126674|ref|YP_004036944.1| - 3.4e-11 42.6 0.1 8.7e-05 21.5 0.0 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313126674|ref|YP_004036944.1| - 1.3e-07 30.8 1.6 0.0018 17.1 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|313126674|ref|YP_004036944.1| - 9e-05 22.4 0.1 0.0024 17.7 0.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313126674|ref|YP_004036944.1| - 0.00013 21.9 2.4 0.00018 21.4 0.2 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|313126674|ref|YP_004036944.1| - 0.00017 20.8 1.6 0.0078 15.3 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|313126674|ref|YP_004036944.1| - 0.00026 20.0 0.1 0.00039 19.4 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|313126674|ref|YP_004036944.1| - 0.00097 17.7 0.7 0.0057 15.1 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|313126674|ref|YP_004036944.1| - 0.0044 16.1 4.4 2.3 7.2 0.0 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|313126674|ref|YP_004036944.1| - 0.021 13.9 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.11 gi|313126674|ref|YP_004036944.1| - 0.026 13.9 0.1 0.094 12.1 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Fer4_7 PF12838.2 gi|313126674|ref|YP_004036944.1| - 0.036 14.4 0.6 0.082 13.3 0.4 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|313126674|ref|YP_004036944.1| - 0.061 13.3 0.0 0.27 11.2 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_17 PF13534.1 gi|313126674|ref|YP_004036944.1| - 0.15 12.4 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Gluconate_2-dh3 PF13618.1 gi|313126675|ref|YP_004036945.1| - 6.5e-14 52.1 0.0 9.8e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 DUF2059 PF09832.4 gi|313126675|ref|YP_004036945.1| - 0.0021 18.0 0.0 0.044 13.8 0.0 2.8 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2059) TAT_signal PF10518.4 gi|313126675|ref|YP_004036945.1| - 3.8 7.7 10.1 0.39 10.8 3.5 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF1648 PF07853.6 gi|313126676|ref|YP_004036946.1| - 8.8e-12 44.3 2.1 8.8e-12 44.3 1.5 2.0 2 1 1 3 3 3 1 Protein of unknown function (DUF1648) DUF4282 PF14110.1 gi|313126676|ref|YP_004036946.1| - 0.063 13.4 0.8 0.063 13.4 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) FAA_hydrolase PF01557.13 gi|313126677|ref|YP_004036947.1| - 1.4e-65 220.8 0.2 1.7e-65 220.5 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Med5 PF08689.5 gi|313126677|ref|YP_004036947.1| - 0.028 12.1 0.0 0.033 11.8 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit Med5 Lactamase_B_3 PF13483.1 gi|313126678|ref|YP_004036948.1| - 1.1e-20 73.9 1.1 1.5e-20 73.5 0.4 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|313126678|ref|YP_004036948.1| - 5.7e-14 52.1 1.5 7.3e-14 51.7 1.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|313126678|ref|YP_004036948.1| - 5e-11 42.6 6.0 7.7e-11 41.9 4.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily OsmC PF02566.14 gi|313126679|ref|YP_004036949.1| - 4.2e-14 52.5 0.0 5.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF3168 PF11367.3 gi|313126679|ref|YP_004036949.1| - 0.045 13.9 0.3 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3168) DJ-1_PfpI PF01965.19 gi|313126681|ref|YP_004036951.1| - 4.2e-40 136.6 0.1 5.1e-40 136.3 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|313126681|ref|YP_004036951.1| - 3.2e-12 46.0 0.0 4.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|313126681|ref|YP_004036951.1| - 2.5e-05 23.8 0.0 3.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|313126681|ref|YP_004036951.1| - 0.00062 19.3 0.0 0.00095 18.7 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SnoaL_3 PF13474.1 gi|313126681|ref|YP_004036951.1| - 0.021 14.8 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 SnoaL-like domain GATase_5 PF13507.1 gi|313126681|ref|YP_004036951.1| - 0.038 12.8 0.0 0.056 12.3 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Hydrolase_6 PF13344.1 gi|313126682|ref|YP_004036952.1| - 9.4e-25 86.4 0.0 2.3e-24 85.2 0.0 1.7 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313126682|ref|YP_004036952.1| - 6e-21 73.9 0.2 3.2e-20 71.6 0.1 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313126682|ref|YP_004036952.1| - 3.8e-09 37.2 0.3 6.6e-09 36.4 0.2 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|313126682|ref|YP_004036952.1| - 3.9e-08 33.7 0.6 0.0013 18.9 0.0 3.1 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|313126682|ref|YP_004036952.1| - 0.0015 17.9 0.1 0.005 16.2 0.0 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase DUF973 PF06157.6 gi|313126683|ref|YP_004036953.1| - 0.00018 20.5 0.6 0.0002 20.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF2651 PF10852.3 gi|313126683|ref|YP_004036953.1| - 0.01 16.1 4.8 0.014 15.6 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2651) Oxidored_q2 PF00420.19 gi|313126683|ref|YP_004036953.1| - 0.019 14.5 1.9 0.024 14.2 1.3 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1625 PF07787.7 gi|313126683|ref|YP_004036953.1| - 0.082 12.1 0.8 0.09 12.0 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) Cation_ATPase_C PF00689.16 gi|313126683|ref|YP_004036953.1| - 0.12 11.8 2.0 0.14 11.7 1.4 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus UL2 PF08196.6 gi|313126683|ref|YP_004036953.1| - 0.32 10.7 2.7 0.83 9.4 1.8 1.6 1 0 0 1 1 1 0 UL2 protein Tic20 PF09685.5 gi|313126683|ref|YP_004036953.1| - 0.82 9.6 5.8 1.4 8.9 4.0 1.4 1 1 0 1 1 1 0 Tic20-like protein GGDN PF05165.7 gi|313126684|ref|YP_004036954.1| - 4e-88 294.6 0.0 5.3e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 GGDN family Pyridox_oxidase PF01243.15 gi|313126686|ref|YP_004036956.1| - 6.3e-16 58.1 0.0 8e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|313126686|ref|YP_004036956.1| - 4.8e-07 29.7 0.0 5.4e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase COX7a PF02238.10 gi|313126690|ref|YP_004036960.1| - 1.1 9.0 2.9 2.3 8.0 1.9 1.7 1 1 1 2 2 2 0 Cytochrome c oxidase subunit VIIa DUF4131 PF13567.1 gi|313126690|ref|YP_004036960.1| - 5.5 6.3 5.8 1.9 7.8 1.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) UPF1_Zn_bind PF09416.5 gi|313126693|ref|YP_004036963.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) Zn-ribbon_8 PF09723.5 gi|313126693|ref|YP_004036963.1| - 0.11 12.4 3.2 3 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Fer2 PF00111.22 gi|313126696|ref|YP_004036966.1| - 1e-15 57.2 0.3 1.5e-15 56.6 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.6 gi|313126697|ref|YP_004036967.1| - 1.5e-189 630.2 0.1 1.8e-189 630.0 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Beta_propel PF09826.4 gi|313126697|ref|YP_004036967.1| - 0.0081 14.5 0.0 0.014 13.7 0.0 1.3 1 0 0 1 1 1 1 Beta propeller domain P53 PF00870.13 gi|313126697|ref|YP_004036967.1| - 0.044 13.3 0.0 7.9 6.0 0.0 2.2 2 0 0 2 2 2 0 P53 DNA-binding domain IMPDH PF00478.20 gi|313126698|ref|YP_004036968.1| - 1.4e-129 432.0 5.5 1.6e-129 431.8 3.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|313126698|ref|YP_004036968.1| - 6.4e-28 96.2 6.4 1.3e-15 56.8 0.6 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|313126698|ref|YP_004036968.1| - 2.2e-10 40.1 6.0 7e-06 25.4 1.7 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|313126698|ref|YP_004036968.1| - 6.6e-09 35.0 5.0 1.4e-08 34.0 3.4 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|313126698|ref|YP_004036968.1| - 0.0002 20.3 3.0 0.00037 19.5 2.1 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|313126698|ref|YP_004036968.1| - 0.0011 18.1 2.0 0.0011 18.1 1.4 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|313126698|ref|YP_004036968.1| - 0.0012 17.9 1.5 0.0025 16.8 0.9 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|313126698|ref|YP_004036968.1| - 0.0033 16.7 1.2 0.021 14.0 0.1 2.0 1 1 1 2 2 2 1 Histidine biosynthesis protein HET-s_218-289 PF11558.3 gi|313126698|ref|YP_004036968.1| - 0.01 15.7 0.2 0.026 14.4 0.1 1.6 1 0 0 1 1 1 0 Het-s 218-289 PEP_mutase PF13714.1 gi|313126698|ref|YP_004036968.1| - 0.053 12.7 0.1 0.053 12.7 0.0 2.7 3 1 1 4 4 4 0 Phosphoenolpyruvate phosphomutase PcrB PF01884.12 gi|313126698|ref|YP_004036968.1| - 0.46 9.6 6.6 0.063 12.5 0.4 2.4 3 0 0 3 3 3 0 PcrB family Regulator_TrmB PF11495.3 gi|313126699|ref|YP_004036969.1| - 1.9e-62 210.3 0.1 2.3e-62 210.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|313126699|ref|YP_004036969.1| - 2.2e-15 56.0 0.0 4.1e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|313126699|ref|YP_004036969.1| - 0.00073 19.2 0.0 0.0021 17.8 0.0 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|313126699|ref|YP_004036969.1| - 0.0028 17.0 0.0 0.0057 16.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding NTase_sub_bind PF08780.6 gi|313126699|ref|YP_004036969.1| - 0.0074 16.0 0.2 0.02 14.6 0.1 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase substrate binding protein like MarR_2 PF12802.2 gi|313126699|ref|YP_004036969.1| - 0.0078 15.8 0.1 0.019 14.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313126699|ref|YP_004036969.1| - 0.037 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|313126699|ref|YP_004036969.1| - 0.038 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|313126699|ref|YP_004036969.1| - 0.098 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|313126699|ref|YP_004036969.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|313126699|ref|YP_004036969.1| - 0.17 11.6 1.0 0.36 10.6 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain MDMPI_N PF11716.3 gi|313126699|ref|YP_004036969.1| - 0.76 10.2 6.3 1 9.7 2.2 2.4 2 1 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain HalX PF08663.5 gi|313126700|ref|YP_004036970.1| - 3.8e-22 78.0 9.8 3.8e-22 78.0 6.8 2.4 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|313126700|ref|YP_004036970.1| - 2.4e-18 66.1 0.1 4e-18 65.4 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_24 PF13578.1 gi|313126700|ref|YP_004036970.1| - 0.34 11.7 3.4 0.95 10.3 0.3 2.3 1 1 1 2 2 2 0 Methyltransferase domain DUF218 PF02698.12 gi|313126704|ref|YP_004036974.1| - 1.4e-29 102.6 0.0 1.6e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 DUF218 domain Peripla_BP_2 PF01497.13 gi|313126705|ref|YP_004036975.1| - 5.5e-13 48.5 0.0 9.8e-13 47.7 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein Aminotran_1_2 PF00155.16 gi|313126706|ref|YP_004036976.1| - 7e-71 239.0 0.0 7.9e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|313126706|ref|YP_004036976.1| - 1.3e-05 24.5 0.0 2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|313126706|ref|YP_004036976.1| - 0.0021 16.8 0.0 0.0031 16.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V AsnC_trans_reg PF01037.16 gi|313126707|ref|YP_004036977.1| - 2.9e-18 65.3 0.1 5.5e-18 64.4 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|313126707|ref|YP_004036977.1| - 1.1e-09 37.5 0.1 1.8e-09 36.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313126707|ref|YP_004036977.1| - 6.5e-06 25.5 2.6 1e-05 24.9 0.7 2.1 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|313126707|ref|YP_004036977.1| - 6.1e-05 22.6 0.1 0.00013 21.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313126707|ref|YP_004036977.1| - 9.7e-05 21.8 0.1 0.00019 20.9 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|313126707|ref|YP_004036977.1| - 0.0026 17.2 0.4 0.004 16.6 0.3 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|313126707|ref|YP_004036977.1| - 0.016 15.5 0.1 0.038 14.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|313126707|ref|YP_004036977.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|313126707|ref|YP_004036977.1| - 0.039 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Gp_dh_C PF02800.15 gi|313126707|ref|YP_004036977.1| - 0.059 12.8 0.0 0.095 12.1 0.0 1.4 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FeoC PF09012.5 gi|313126707|ref|YP_004036977.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|313126707|ref|YP_004036977.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|313126707|ref|YP_004036977.1| - 0.12 12.4 0.1 0.24 11.5 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn helix DUF2250 PF10007.4 gi|313126707|ref|YP_004036977.1| - 0.15 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) SBP_bac_11 PF13531.1 gi|313126708|ref|YP_004036978.1| - 2.5e-28 99.2 0.3 3.1e-28 98.9 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313126708|ref|YP_004036978.1| - 4.7e-05 23.2 1.3 0.0013 18.5 0.3 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313126708|ref|YP_004036978.1| - 0.0026 17.1 0.4 0.031 13.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|313126709|ref|YP_004036979.1| - 9.3e-17 61.1 10.7 9.3e-17 61.1 7.4 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4149 PF13664.1 gi|313126709|ref|YP_004036979.1| - 4.3 7.4 9.9 0.36 10.9 1.2 3.2 2 2 0 2 2 2 0 Domain of unknown function (DUF4149) ABC_tran PF00005.22 gi|313126710|ref|YP_004036980.1| - 2.3e-30 105.6 0.0 3.7e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126710|ref|YP_004036980.1| - 4.1e-08 33.5 0.0 0.00057 19.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|313126710|ref|YP_004036980.1| - 1.4e-05 24.9 0.3 3.6e-05 23.6 0.2 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|313126710|ref|YP_004036980.1| - 0.002 17.4 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|313126710|ref|YP_004036980.1| - 0.0023 17.0 0.0 0.078 12.0 0.0 2.6 2 1 1 3 3 3 1 Zeta toxin AAA_16 PF13191.1 gi|313126710|ref|YP_004036980.1| - 0.0028 17.6 1.0 0.0049 16.8 0.1 1.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_29 PF13555.1 gi|313126710|ref|YP_004036980.1| - 0.0072 15.8 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313126710|ref|YP_004036980.1| - 0.017 15.2 0.1 0.049 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313126710|ref|YP_004036980.1| - 0.031 13.4 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313126710|ref|YP_004036980.1| - 0.063 13.0 0.5 0.48 10.2 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|313126710|ref|YP_004036980.1| - 0.097 12.5 0.3 0.84 9.5 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|313126710|ref|YP_004036980.1| - 0.14 11.6 0.1 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|313126710|ref|YP_004036980.1| - 0.15 11.7 0.3 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BatA PF07584.6 gi|313126712|ref|YP_004036982.1| - 2.2e-18 66.1 4.1 4.5e-18 65.2 2.9 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|313126712|ref|YP_004036982.1| - 1.1e-05 25.6 5.2 2.5e-05 24.4 3.6 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF3357 PF11837.3 gi|313126712|ref|YP_004036982.1| - 0.022 14.6 0.2 0.056 13.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF58 PF01882.13 gi|313126712|ref|YP_004036982.1| - 0.089 12.9 0.2 0.31 11.1 0.2 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|313126713|ref|YP_004036983.1| - 1.1e-27 97.1 4.4 1.6e-23 83.6 0.0 3.4 3 1 0 3 3 3 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|313126713|ref|YP_004036983.1| - 2.8e-16 59.5 0.0 2e-15 56.7 0.0 2.3 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|313126713|ref|YP_004036983.1| - 1.2e-12 47.8 0.0 7.1e-10 38.8 0.0 2.5 2 1 0 2 2 2 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|313126713|ref|YP_004036983.1| - 1.8e-09 37.2 0.0 4e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA_CoxE PF05762.9 gi|313126713|ref|YP_004036983.1| - 5.7e-08 32.1 0.0 1.5e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein DUF4131 PF13567.1 gi|313126713|ref|YP_004036983.1| - 0.13 11.6 1.9 0.21 10.9 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) SCAMP PF04144.8 gi|313126713|ref|YP_004036983.1| - 0.15 11.9 0.2 0.32 10.8 0.1 1.5 1 0 0 1 1 1 0 SCAMP family DivIC PF04977.10 gi|313126714|ref|YP_004036984.1| - 8.9e-08 31.5 26.1 0.00048 19.5 5.3 3.8 1 1 3 4 4 4 2 Septum formation initiator TPR_MLP1_2 PF07926.7 gi|313126714|ref|YP_004036984.1| - 1.2e-07 31.4 31.1 2.1e-05 24.2 11.0 3.0 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.4 gi|313126714|ref|YP_004036984.1| - 6.9e-07 29.2 32.9 0.0088 15.9 10.9 2.4 1 1 2 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fib_alpha PF08702.5 gi|313126714|ref|YP_004036984.1| - 1.7e-06 28.2 30.7 0.00011 22.3 7.7 2.0 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Atg14 PF10186.4 gi|313126714|ref|YP_004036984.1| - 3.6e-06 26.1 23.8 0.0005 19.1 7.7 2.0 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 Mod_r PF07200.8 gi|313126714|ref|YP_004036984.1| - 5.2e-06 26.4 24.0 0.00094 19.1 8.4 2.1 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein Reo_sigmaC PF04582.7 gi|313126714|ref|YP_004036984.1| - 8.9e-06 25.0 9.5 0.0037 16.4 2.2 2.0 1 1 1 2 2 2 2 Reovirus sigma C capsid protein FlaC_arch PF05377.6 gi|313126714|ref|YP_004036984.1| - 1.2e-05 25.0 20.1 0.0029 17.4 3.4 3.8 3 1 1 4 4 4 2 Flagella accessory protein C (FlaC) GAS PF13851.1 gi|313126714|ref|YP_004036984.1| - 1.3e-05 24.4 29.4 0.00012 21.3 13.4 2.1 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding TMF_DNA_bd PF12329.3 gi|313126714|ref|YP_004036984.1| - 1.4e-05 24.7 37.7 0.0072 16.1 4.3 3.0 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding DUF904 PF06005.7 gi|313126714|ref|YP_004036984.1| - 1.5e-05 25.2 33.0 0.00029 21.0 6.3 3.2 2 1 1 3 3 3 2 Protein of unknown function (DUF904) Laminin_II PF06009.7 gi|313126714|ref|YP_004036984.1| - 1.6e-05 24.6 19.5 6.4e-05 22.7 8.7 2.3 1 1 1 2 2 2 1 Laminin Domain II Myosin_tail_1 PF01576.14 gi|313126714|ref|YP_004036984.1| - 1.9e-05 22.6 33.0 0.00013 19.9 22.8 1.7 1 1 0 1 1 1 1 Myosin tail Cast PF10174.4 gi|313126714|ref|YP_004036984.1| - 3.3e-05 22.1 25.5 4.1e-05 21.8 17.7 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Spc7 PF08317.6 gi|313126714|ref|YP_004036984.1| - 3.9e-05 22.4 25.9 0.00038 19.2 18.0 2.0 1 1 0 1 1 1 1 Spc7 kinetochore protein IncA PF04156.9 gi|313126714|ref|YP_004036984.1| - 4.3e-05 23.2 34.9 0.00016 21.3 15.0 2.8 1 1 2 3 3 2 2 IncA protein CCDC155 PF14662.1 gi|313126714|ref|YP_004036984.1| - 4.7e-05 23.0 25.1 7.8e-05 22.3 17.4 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 ERM PF00769.14 gi|313126714|ref|YP_004036984.1| - 4.8e-05 23.0 17.5 4.8e-05 23.0 12.1 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family FliJ PF02050.11 gi|313126714|ref|YP_004036984.1| - 6.2e-05 23.0 19.7 7.5e-05 22.7 12.2 2.0 1 1 1 2 2 2 1 Flagellar FliJ protein AAA_13 PF13166.1 gi|313126714|ref|YP_004036984.1| - 7.3e-05 21.4 15.4 9.6e-05 21.0 10.7 1.1 1 0 0 1 1 1 1 AAA domain EzrA PF06160.7 gi|313126714|ref|YP_004036984.1| - 8e-05 21.0 21.6 0.00019 19.7 15.0 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4201 PF13870.1 gi|313126714|ref|YP_004036984.1| - 0.00013 21.4 26.0 0.00066 19.1 18.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) Rootletin PF15035.1 gi|313126714|ref|YP_004036984.1| - 0.00016 21.7 33.0 0.019 14.9 13.9 2.2 1 1 1 2 2 2 2 Ciliary rootlet component, centrosome cohesion DUF2353 PF09789.4 gi|313126714|ref|YP_004036984.1| - 0.00023 20.5 26.1 0.017 14.4 10.7 2.1 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) bZIP_1 PF00170.16 gi|313126714|ref|YP_004036984.1| - 0.0003 20.6 26.9 0.0016 18.3 2.9 4.1 2 2 2 4 4 4 2 bZIP transcription factor IFT57 PF10498.4 gi|313126714|ref|YP_004036984.1| - 0.00032 19.5 22.7 0.0073 15.0 6.4 2.0 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 ADIP PF11559.3 gi|313126714|ref|YP_004036984.1| - 0.00033 20.5 31.1 0.01 15.7 8.0 2.2 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding Filament PF00038.16 gi|313126714|ref|YP_004036984.1| - 0.00035 20.1 26.4 0.043 13.2 11.2 2.0 1 1 1 2 2 2 2 Intermediate filament protein WXG100 PF06013.7 gi|313126714|ref|YP_004036984.1| - 0.00036 20.4 11.6 0.79 9.7 0.0 4.2 1 1 0 3 3 3 0 Proteins of 100 residues with WXG ATG16 PF08614.6 gi|313126714|ref|YP_004036984.1| - 0.00048 20.0 32.7 0.043 13.6 7.7 2.3 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) TBPIP PF07106.8 gi|313126714|ref|YP_004036984.1| - 0.00071 19.1 26.0 0.047 13.2 4.8 2.3 1 1 2 3 3 3 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Tropomyosin_1 PF12718.2 gi|313126714|ref|YP_004036984.1| - 0.00093 19.0 37.1 0.015 15.1 8.6 2.4 1 1 1 2 2 2 1 Tropomyosin like AAA_27 PF13514.1 gi|313126714|ref|YP_004036984.1| - 0.00094 17.0 21.6 0.0012 16.6 15.0 1.1 1 0 0 1 1 1 1 AAA domain GOLGA2L5 PF15070.1 gi|313126714|ref|YP_004036984.1| - 0.0013 17.3 18.8 0.0017 16.9 13.1 1.1 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 PspA_IM30 PF04012.7 gi|313126714|ref|YP_004036984.1| - 0.0013 18.0 25.6 0.067 12.5 4.9 3.1 1 1 2 3 3 3 1 PspA/IM30 family Prefoldin_2 PF01920.15 gi|313126714|ref|YP_004036984.1| - 0.0016 18.1 32.6 0.023 14.4 2.7 3.5 1 1 2 3 3 3 1 Prefoldin subunit PilJ PF13675.1 gi|313126714|ref|YP_004036984.1| - 0.002 18.4 17.1 0.25 11.6 3.4 3.0 1 1 2 3 3 3 2 Type IV pili methyl-accepting chemotaxis transducer N-term PEARLI-4 PF05278.7 gi|313126714|ref|YP_004036984.1| - 0.0022 17.4 12.6 0.0027 17.1 8.3 1.4 1 1 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) WEMBL PF05701.6 gi|313126714|ref|YP_004036984.1| - 0.0022 16.5 25.6 0.0031 16.0 17.7 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light BLOC1_2 PF10046.4 gi|313126714|ref|YP_004036984.1| - 0.0023 18.0 19.2 0.028 14.5 2.3 3.0 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF972 PF06156.8 gi|313126714|ref|YP_004036984.1| - 0.0025 18.1 24.3 0.02 15.2 4.4 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|313126714|ref|YP_004036984.1| - 0.0025 15.2 24.5 0.0043 14.4 17.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MAD PF05557.8 gi|313126714|ref|YP_004036984.1| - 0.0031 15.6 27.2 0.0041 15.2 18.9 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein DUF812 PF05667.6 gi|313126714|ref|YP_004036984.1| - 0.0032 16.0 23.4 0.059 11.8 8.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) APG6 PF04111.7 gi|313126714|ref|YP_004036984.1| - 0.0038 16.3 30.9 0.0068 15.4 14.7 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 DUF869 PF05911.6 gi|313126714|ref|YP_004036984.1| - 0.0041 15.4 25.9 0.015 13.5 12.4 2.0 1 1 1 2 2 2 2 Plant protein of unknown function (DUF869) DUF2968 PF11180.3 gi|313126714|ref|YP_004036984.1| - 0.0056 16.0 9.9 0.0056 16.0 6.8 2.6 1 1 2 3 3 3 1 Protein of unknown function (DUF2968) Laminin_I PF06008.9 gi|313126714|ref|YP_004036984.1| - 0.0082 15.4 21.9 0.055 12.7 7.0 2.1 1 1 0 1 1 1 1 Laminin Domain I Vps5 PF09325.5 gi|313126714|ref|YP_004036984.1| - 0.0085 15.3 13.3 0.33 10.1 6.5 2.6 2 1 0 2 2 2 1 Vps5 C terminal like Cluap1 PF10234.4 gi|313126714|ref|YP_004036984.1| - 0.0091 15.2 9.3 0.0091 15.2 6.5 2.1 1 1 1 2 2 2 1 Clusterin-associated protein-1 COG2 PF06148.6 gi|313126714|ref|YP_004036984.1| - 0.0094 15.8 19.2 0.49 10.2 5.7 3.5 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF4200 PF13863.1 gi|313126714|ref|YP_004036984.1| - 0.0096 15.8 29.8 0.16 11.9 14.3 2.8 1 1 2 3 3 3 2 Domain of unknown function (DUF4200) Seryl_tRNA_N PF02403.17 gi|313126714|ref|YP_004036984.1| - 0.0097 15.9 23.9 0.068 13.1 7.1 2.5 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.6 gi|313126714|ref|YP_004036984.1| - 0.011 15.6 15.4 0.093 12.5 1.8 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|313126714|ref|YP_004036984.1| - 0.012 15.4 16.5 0.012 15.3 4.3 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Vps52 PF04129.7 gi|313126714|ref|YP_004036984.1| - 0.013 14.0 7.8 0.18 10.2 2.0 2.0 1 1 1 2 2 2 0 Vps52 / Sac2 family HlyD PF00529.15 gi|313126714|ref|YP_004036984.1| - 0.015 14.6 19.3 0.26 10.5 12.8 2.0 1 1 0 1 1 1 0 HlyD family secretion protein NPV_P10 PF05531.7 gi|313126714|ref|YP_004036984.1| - 0.016 15.4 15.0 0.26 11.5 2.1 3.2 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein CENP-Q PF13094.1 gi|313126714|ref|YP_004036984.1| - 0.019 15.0 34.7 0.17 11.9 15.0 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4446 PF14584.1 gi|313126714|ref|YP_004036984.1| - 0.02 14.7 17.5 0.35 10.6 0.5 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) DUF3450 PF11932.3 gi|313126714|ref|YP_004036984.1| - 0.021 14.0 22.5 0.31 10.2 7.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Tropomyosin PF00261.15 gi|313126714|ref|YP_004036984.1| - 0.022 13.8 31.5 0.0099 14.9 18.5 2.1 1 1 1 2 2 2 0 Tropomyosin HrpB7 PF09486.5 gi|313126714|ref|YP_004036984.1| - 0.022 14.6 19.9 0.44 10.4 2.1 3.1 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) bZIP_2 PF07716.10 gi|313126714|ref|YP_004036984.1| - 0.023 14.4 0.7 0.023 14.4 0.5 4.6 3 1 3 6 6 5 0 Basic region leucine zipper Sec2p PF06428.6 gi|313126714|ref|YP_004036984.1| - 0.024 14.4 28.2 0.19 11.6 3.3 3.2 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p DASH_Duo1 PF08651.5 gi|313126714|ref|YP_004036984.1| - 0.025 14.1 2.0 0.025 14.1 1.4 2.6 2 1 0 2 2 2 0 DASH complex subunit Duo1 Halogen_Hydrol PF10112.4 gi|313126714|ref|YP_004036984.1| - 0.025 14.0 8.4 0.42 9.9 0.1 2.6 1 1 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DivIVA PF05103.8 gi|313126714|ref|YP_004036984.1| - 0.025 14.6 25.9 0.16 12.0 4.9 3.0 1 1 2 3 3 3 0 DivIVA protein MCPsignal PF00015.16 gi|313126714|ref|YP_004036984.1| - 0.027 14.0 7.3 0.11 11.9 4.9 1.9 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF342 PF03961.8 gi|313126714|ref|YP_004036984.1| - 0.027 12.9 20.1 0.3 9.4 7.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Mnd1 PF03962.10 gi|313126714|ref|YP_004036984.1| - 0.032 13.9 27.5 0.25 10.9 11.0 2.1 1 1 1 2 2 2 0 Mnd1 family MscS_porin PF12795.2 gi|313126714|ref|YP_004036984.1| - 0.035 13.4 28.4 0.1 11.8 19.7 1.7 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain FH2 PF02181.18 gi|313126714|ref|YP_004036984.1| - 0.038 12.8 14.6 0.0092 14.9 3.5 2.3 1 1 1 2 2 2 0 Formin Homology 2 Domain Phage_GP20 PF06810.6 gi|313126714|ref|YP_004036984.1| - 0.039 13.4 26.0 0.039 13.3 10.2 2.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 Fez1 PF06818.10 gi|313126714|ref|YP_004036984.1| - 0.04 13.9 24.1 0.052 13.5 16.7 1.2 1 0 0 1 1 1 0 Fez1 Spectrin PF00435.16 gi|313126714|ref|YP_004036984.1| - 0.043 14.1 22.8 0.17 12.1 10.8 2.2 1 1 1 2 2 2 0 Spectrin repeat DUF2730 PF10805.3 gi|313126714|ref|YP_004036984.1| - 0.051 13.3 16.8 0.33 10.7 4.5 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF2730) Cep57_MT_bd PF06657.8 gi|313126714|ref|YP_004036984.1| - 0.055 13.4 22.9 0.042 13.7 2.9 3.5 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 HOOK PF05622.7 gi|313126714|ref|YP_004036984.1| - 0.059 11.1 30.6 0.056 11.2 15.0 2.0 1 1 1 2 2 2 0 HOOK protein EST1_DNA_bind PF10373.4 gi|313126714|ref|YP_004036984.1| - 0.082 12.1 2.1 0.1 11.7 1.4 1.1 1 0 0 1 1 1 0 Est1 DNA/RNA binding domain BCAS2 PF05700.6 gi|313126714|ref|YP_004036984.1| - 0.096 12.1 21.7 0.58 9.5 7.4 2.2 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Exonuc_VII_L PF02601.10 gi|313126714|ref|YP_004036984.1| - 0.1 11.7 15.2 0.14 11.3 10.5 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF1043 PF06295.7 gi|313126714|ref|YP_004036984.1| - 0.11 12.0 13.3 2.4 7.7 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1043) DUF2681 PF10883.3 gi|313126714|ref|YP_004036984.1| - 0.12 12.6 0.4 0.12 12.6 0.3 3.0 1 1 2 3 3 2 0 Protein of unknown function (DUF2681) Metal_resist PF13801.1 gi|313126714|ref|YP_004036984.1| - 0.12 12.3 18.2 0.045 13.7 3.4 2.3 1 1 1 2 2 2 0 Heavy-metal resistance Cas_DxTHG PF09455.5 gi|313126714|ref|YP_004036984.1| - 0.13 11.3 5.8 0.15 11.1 4.0 1.0 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family Nup54 PF13874.1 gi|313126714|ref|YP_004036984.1| - 0.13 11.8 20.4 0.48 10.0 5.5 2.5 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 FliD_N PF02465.13 gi|313126714|ref|YP_004036984.1| - 0.14 12.5 11.0 0.69 10.3 2.3 2.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF1049 PF06305.6 gi|313126714|ref|YP_004036984.1| - 0.14 11.6 0.0 0.14 11.6 0.0 3.9 3 2 2 5 5 4 0 Protein of unknown function (DUF1049) Cortex-I_coil PF09304.5 gi|313126714|ref|YP_004036984.1| - 0.15 12.1 30.5 1.4 8.9 11.1 2.4 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF745 PF05335.8 gi|313126714|ref|YP_004036984.1| - 0.15 11.5 14.3 1.1 8.6 3.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF4407 PF14362.1 gi|313126714|ref|YP_004036984.1| - 0.16 10.8 20.3 0.76 8.6 14.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Syntaxin-6_N PF09177.6 gi|313126714|ref|YP_004036984.1| - 0.16 12.3 23.9 0.93 9.9 4.4 3.2 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Hormone_1 PF00103.15 gi|313126714|ref|YP_004036984.1| - 0.17 11.2 10.2 1 8.6 2.5 2.2 1 1 1 2 2 2 0 Somatotropin hormone family ALIX_LYPXL_bnd PF13949.1 gi|313126714|ref|YP_004036984.1| - 0.18 10.7 24.8 3.4 6.5 17.4 2.0 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV Fmp27_WPPW PF10359.4 gi|313126714|ref|YP_004036984.1| - 0.19 10.1 23.5 0.32 9.3 7.1 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Baculo_PEP_C PF04513.7 gi|313126714|ref|YP_004036984.1| - 0.2 11.5 14.8 11 5.7 10.3 2.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4559 PF15112.1 gi|313126714|ref|YP_004036984.1| - 0.2 10.7 16.9 0.27 10.3 11.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Hemagglutinin PF00509.13 gi|313126714|ref|YP_004036984.1| - 0.21 9.6 8.9 0.06 11.4 3.3 1.9 1 1 1 2 2 2 0 Haemagglutinin Rab5-bind PF09311.6 gi|313126714|ref|YP_004036984.1| - 0.22 11.4 31.6 0.62 9.9 21.9 1.6 1 1 0 1 1 1 0 Rabaptin-like protein DUF3427 PF11907.3 gi|313126714|ref|YP_004036984.1| - 0.22 10.4 6.2 0.18 10.7 3.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3427) AATF-Che1 PF13339.1 gi|313126714|ref|YP_004036984.1| - 0.23 11.5 21.7 0.85 9.7 8.8 2.1 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Macoilin PF09726.4 gi|313126714|ref|YP_004036984.1| - 0.25 9.5 25.0 0.17 10.1 8.5 1.9 1 1 1 2 2 2 0 Transmembrane protein V_ATPase_I PF01496.14 gi|313126714|ref|YP_004036984.1| - 0.26 9.0 22.8 0.02 12.8 10.5 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Allexi_40kDa PF05549.6 gi|313126714|ref|YP_004036984.1| - 0.29 10.4 12.1 0.75 9.0 3.2 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein CALCOCO1 PF07888.6 gi|313126714|ref|YP_004036984.1| - 0.29 9.3 25.1 1.2 7.3 9.9 2.0 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like TSC22 PF01166.13 gi|313126714|ref|YP_004036984.1| - 0.29 11.1 28.7 0.73 9.8 4.2 4.6 1 1 2 4 4 4 0 TSC-22/dip/bun family Bacillus_HBL PF05791.6 gi|313126714|ref|YP_004036984.1| - 0.31 10.4 15.4 0.57 9.5 3.1 2.5 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) CK2S PF15011.1 gi|313126714|ref|YP_004036984.1| - 0.33 10.7 13.4 11 5.7 0.1 3.0 1 1 1 2 2 2 0 Casein Kinase 2 substrate DUF4618 PF15397.1 gi|313126714|ref|YP_004036984.1| - 0.33 10.2 23.3 1.4 8.1 1.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Cauli_AT PF03233.8 gi|313126714|ref|YP_004036984.1| - 0.33 10.6 15.5 0.35 10.5 5.6 2.1 1 1 1 2 2 2 0 Aphid transmission protein Sec8_exocyst PF04048.9 gi|313126714|ref|YP_004036984.1| - 0.35 10.4 17.5 0.66 9.6 2.3 3.8 1 1 3 4 4 4 0 Sec8 exocyst complex component specific domain CCDC144C PF14915.1 gi|313126714|ref|YP_004036984.1| - 0.36 9.6 26.8 3.4 6.4 17.8 1.9 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Occludin_ELL PF07303.8 gi|313126714|ref|YP_004036984.1| - 0.38 11.5 13.7 2.2e+02 2.6 9.5 2.8 1 1 0 1 1 1 0 Occludin homology domain RmuC PF02646.11 gi|313126714|ref|YP_004036984.1| - 0.39 9.4 18.0 1.7 7.4 3.9 2.3 1 1 1 2 2 2 0 RmuC family Prominin PF05478.6 gi|313126714|ref|YP_004036984.1| - 0.4 8.1 14.9 1.7 6.0 5.3 2.0 1 1 1 2 2 2 0 Prominin Spc24 PF08286.6 gi|313126714|ref|YP_004036984.1| - 0.41 10.3 32.1 1.1 8.9 4.7 3.1 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 DUF641 PF04859.7 gi|313126714|ref|YP_004036984.1| - 0.41 10.4 18.8 0.28 10.9 1.9 2.6 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Astro_capsid PF03115.9 gi|313126714|ref|YP_004036984.1| - 0.44 8.7 6.1 0.51 8.5 4.2 1.0 1 0 0 1 1 1 0 Astrovirus capsid protein precursor Prefoldin PF02996.12 gi|313126714|ref|YP_004036984.1| - 0.47 10.1 23.7 6.6 6.4 2.8 3.8 1 1 3 4 4 4 0 Prefoldin subunit Pox_A_type_inc PF04508.7 gi|313126714|ref|YP_004036984.1| - 0.48 10.3 30.2 0.13 12.1 0.9 5.6 5 1 2 7 7 4 0 Viral A-type inclusion protein repeat Flagellin_C PF00700.16 gi|313126714|ref|YP_004036984.1| - 0.56 10.4 10.3 0.45 10.6 0.4 3.4 1 1 3 4 4 3 0 Bacterial flagellin C-terminal helical region DUF1202 PF06717.6 gi|313126714|ref|YP_004036984.1| - 0.57 9.4 6.9 0.4 9.9 2.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1202) DUF3552 PF12072.3 gi|313126714|ref|YP_004036984.1| - 0.61 9.2 34.4 6.2 5.9 20.5 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) COG6 PF06419.6 gi|313126714|ref|YP_004036984.1| - 0.63 8.0 16.7 0.8 7.7 3.9 2.1 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 HisKA_3 PF07730.8 gi|313126714|ref|YP_004036984.1| - 0.63 10.4 17.9 7.1 7.0 0.4 4.0 1 1 1 2 2 1 0 Histidine kinase YscO PF07321.7 gi|313126714|ref|YP_004036984.1| - 0.65 9.8 26.7 3.6 7.4 8.6 2.8 1 1 2 3 3 3 0 Type III secretion protein YscO Mei4 PF13971.1 gi|313126714|ref|YP_004036984.1| - 0.67 8.8 12.7 0.83 8.5 8.8 1.1 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 MbeD_MobD PF04899.7 gi|313126714|ref|YP_004036984.1| - 0.69 9.8 11.9 3.9 7.4 1.6 3.0 2 1 1 3 3 2 0 MbeD/MobD like Cep57_CLD_2 PF14197.1 gi|313126714|ref|YP_004036984.1| - 0.86 9.5 38.4 1.7e+02 2.2 13.4 3.7 1 1 1 2 2 1 0 Centrosome localisation domain of PPC89 Adeno_PIX PF03955.9 gi|313126714|ref|YP_004036984.1| - 0.87 10.1 15.4 2.5 8.6 1.7 2.9 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Sec34 PF04136.10 gi|313126714|ref|YP_004036984.1| - 0.87 9.2 12.8 0.52 9.9 4.0 2.1 1 1 1 2 2 2 0 Sec34-like family Hemerythrin PF01814.18 gi|313126714|ref|YP_004036984.1| - 0.91 9.6 13.6 94 3.1 9.5 2.5 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Prefoldin_3 PF13758.1 gi|313126714|ref|YP_004036984.1| - 0.94 9.2 15.3 1.4 8.7 6.5 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF3166 PF11365.3 gi|313126714|ref|YP_004036984.1| - 1 9.8 17.6 1.2 9.5 7.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3166) Uds1 PF15456.1 gi|313126714|ref|YP_004036984.1| - 1 9.3 24.2 0.26 11.2 11.2 2.7 1 1 2 3 3 3 0 Up-regulated During Septation DUF724 PF05266.9 gi|313126714|ref|YP_004036984.1| - 1.1 8.8 21.3 0.84 9.2 8.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Phlebovirus_NSM PF07246.6 gi|313126714|ref|YP_004036984.1| - 1.1 8.3 17.4 0.053 12.6 0.6 2.3 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M Snapin_Pallidin PF14712.1 gi|313126714|ref|YP_004036984.1| - 1.1 9.5 21.8 0.53 10.6 3.3 3.1 1 1 2 3 3 3 0 Snapin/Pallidin HALZ PF02183.13 gi|313126714|ref|YP_004036984.1| - 1.1 8.9 21.6 0.65 9.7 3.0 3.6 2 1 1 3 3 3 0 Homeobox associated leucine zipper RasGAP_C PF03836.10 gi|313126714|ref|YP_004036984.1| - 1.2 8.7 15.3 4.5 6.9 3.4 2.5 1 1 1 2 2 2 0 RasGAP C-terminus TarH PF02203.10 gi|313126714|ref|YP_004036984.1| - 1.3 8.8 17.1 1.6 8.5 1.2 2.1 1 1 1 2 2 2 0 Tar ligand binding domain homologue bZIP_Maf PF03131.12 gi|313126714|ref|YP_004036984.1| - 1.3 9.3 26.7 0.15 12.3 2.4 3.5 1 1 1 3 3 3 0 bZIP Maf transcription factor Syntaxin PF00804.20 gi|313126714|ref|YP_004036984.1| - 1.4 9.1 21.8 0.67 10.1 5.2 2.6 1 1 1 2 2 2 0 Syntaxin Bap31 PF05529.7 gi|313126714|ref|YP_004036984.1| - 1.4 8.3 20.8 0.23 10.8 1.1 2.6 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Tho2 PF11262.3 gi|313126714|ref|YP_004036984.1| - 1.4 7.8 15.4 2.2 7.2 4.4 2.1 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 CP12 PF02672.10 gi|313126714|ref|YP_004036984.1| - 1.5 9.3 13.1 0.29 11.6 3.1 2.4 2 1 0 2 2 2 0 CP12 domain RTBV_P46 PF06216.6 gi|313126714|ref|YP_004036984.1| - 1.6 7.4 13.4 2.6 6.7 0.7 2.4 1 1 1 2 2 2 0 Rice tungro bacilliform virus P46 protein Taxilin PF09728.4 gi|313126714|ref|YP_004036984.1| - 1.6 7.7 25.5 0.23 10.5 6.8 2.1 1 1 1 2 2 2 0 Myosin-like coiled-coil protein KfrA_N PF11740.3 gi|313126714|ref|YP_004036984.1| - 1.7 9.1 27.3 1.4 9.3 1.8 3.3 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term DUF4140 PF13600.1 gi|313126714|ref|YP_004036984.1| - 1.8 9.0 26.7 14 6.2 3.8 3.5 1 1 1 2 2 1 0 N-terminal domain of unknown function (DUF4140) DMPK_coil PF08826.5 gi|313126714|ref|YP_004036984.1| - 1.9 8.4 29.5 0.75 9.7 8.8 4.0 1 1 3 4 4 3 0 DMPK coiled coil domain like End3 PF12761.2 gi|313126714|ref|YP_004036984.1| - 1.9 8.0 20.7 1.1 8.8 11.2 2.1 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 She9_MDM33 PF05546.6 gi|313126714|ref|YP_004036984.1| - 2 7.9 17.5 0.97 8.9 5.0 2.5 1 1 1 2 2 2 0 She9 / Mdm33 family THOC7 PF05615.8 gi|313126714|ref|YP_004036984.1| - 2.1 8.5 28.1 0.91 9.7 3.1 2.8 1 1 1 2 2 2 0 Tho complex subunit 7 MT PF12777.2 gi|313126714|ref|YP_004036984.1| - 2.3 6.9 7.6 1.5 7.4 1.5 2.1 1 1 1 2 2 2 0 Microtubule-binding stalk of dynein motor Ax_dynein_light PF10211.4 gi|313126714|ref|YP_004036984.1| - 2.3 8.0 28.0 0.45 10.3 4.6 2.9 1 1 2 3 3 2 0 Axonemal dynein light chain Lebercilin PF15619.1 gi|313126714|ref|YP_004036984.1| - 2.4 7.5 31.1 6.6 6.0 21.6 1.7 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF2935 PF11155.3 gi|313126714|ref|YP_004036984.1| - 2.4 8.2 9.2 2.9e+02 1.5 6.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) DUF773 PF05600.7 gi|313126714|ref|YP_004036984.1| - 2.4 6.8 16.5 5.2 5.7 11.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF773) GrpE PF01025.14 gi|313126714|ref|YP_004036984.1| - 2.6 7.5 28.3 1.5e+04 -7.2 19.6 3.0 1 1 0 1 1 0 0 GrpE DUF3053 PF11254.3 gi|313126714|ref|YP_004036984.1| - 2.8 7.1 10.4 5.9 6.0 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) TMPIT PF07851.8 gi|313126714|ref|YP_004036984.1| - 2.9 6.8 16.1 3 6.8 7.8 2.1 1 1 2 3 3 3 0 TMPIT-like protein HAUS6_N PF14661.1 gi|313126714|ref|YP_004036984.1| - 3.1 7.0 19.9 0.66 9.2 9.0 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Tweety PF04906.8 gi|313126714|ref|YP_004036984.1| - 3.2 6.0 9.2 1.1 7.6 2.9 2.0 1 1 1 2 2 2 0 Tweety FUSC PF04632.7 gi|313126714|ref|YP_004036984.1| - 3.2 6.0 12.8 6.8 4.9 8.8 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family Transposase_22 PF02994.9 gi|313126714|ref|YP_004036984.1| - 3.3 6.1 19.8 3 6.2 8.7 2.0 1 1 0 1 1 1 0 L1 transposable element HCMV_UL139 PF12507.3 gi|313126714|ref|YP_004036984.1| - 3.4 7.8 11.4 1.8 8.7 1.8 2.9 1 1 1 2 2 2 0 Human Cytomegalovirus UL139 protein Lectin_N PF03954.9 gi|313126714|ref|YP_004036984.1| - 3.5 7.0 16.6 12 5.3 3.4 2.7 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Fzo_mitofusin PF04799.8 gi|313126714|ref|YP_004036984.1| - 3.5 6.9 19.3 5 6.4 1.9 2.7 1 1 2 3 3 3 0 fzo-like conserved region BMFP PF04380.8 gi|313126714|ref|YP_004036984.1| - 3.7 7.7 21.5 0.39 10.8 3.2 4.2 2 2 2 4 4 2 0 Membrane fusogenic activity SlyX PF04102.7 gi|313126714|ref|YP_004036984.1| - 3.8 7.9 22.9 0.21 11.9 2.6 3.8 1 1 2 3 3 2 0 SlyX Sas10_Utp3 PF04000.10 gi|313126714|ref|YP_004036984.1| - 4 7.7 15.0 70 3.7 0.3 3.8 1 1 1 2 2 1 0 Sas10/Utp3/C1D family Kinetocho_Slk19 PF12709.2 gi|313126714|ref|YP_004036984.1| - 4 7.5 26.0 0.49 10.4 1.2 4.0 1 1 1 2 2 1 0 Central kinetochore-associated DUF883 PF05957.8 gi|313126714|ref|YP_004036984.1| - 4.3 7.8 22.2 1.8 8.9 3.8 3.4 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) UPF0449 PF15136.1 gi|313126714|ref|YP_004036984.1| - 4.3 7.6 22.6 5.5 7.2 3.1 4.0 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 BRE1 PF08647.6 gi|313126714|ref|YP_004036984.1| - 4.4 7.3 23.6 0.65 10.0 9.8 2.4 2 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase HAP1_N PF04849.8 gi|313126714|ref|YP_004036984.1| - 4.4 6.1 30.6 17 4.2 21.2 1.8 1 1 0 1 1 1 0 HAP1 N-terminal conserved region OmpH PF03938.9 gi|313126714|ref|YP_004036984.1| - 4.6 7.1 26.5 6.3e+03 -3.1 18.3 2.6 1 1 0 1 1 0 0 Outer membrane protein (OmpH-like) DUF4398 PF14346.1 gi|313126714|ref|YP_004036984.1| - 4.9 7.2 16.3 0.43 10.6 6.4 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4398) SSFA2_C PF14723.1 gi|313126714|ref|YP_004036984.1| - 4.9 6.8 17.7 0.91 9.2 3.0 2.3 1 1 1 2 2 2 0 Sperm-specific antigen 2 C-terminus Viral_P18 PF04521.8 gi|313126714|ref|YP_004036984.1| - 5 6.5 16.5 5.7 6.4 3.3 3.1 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein Med9 PF07544.8 gi|313126714|ref|YP_004036984.1| - 5.1 6.9 21.4 18 5.1 6.7 3.6 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 COG5 PF10392.4 gi|313126714|ref|YP_004036984.1| - 5.4 6.9 14.8 14 5.6 6.0 2.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 FlxA PF14282.1 gi|313126714|ref|YP_004036984.1| - 6.2 6.8 22.0 0.33 10.9 2.5 3.0 1 1 2 3 3 2 0 FlxA-like protein DegS PF05384.6 gi|313126714|ref|YP_004036984.1| - 6.2 6.0 22.9 20 4.3 6.3 2.9 1 1 1 2 2 2 0 Sensor protein DegS Striatin PF08232.7 gi|313126714|ref|YP_004036984.1| - 6.4 7.0 23.9 29 4.9 8.4 2.2 1 1 1 2 2 2 0 Striatin family DUF2570 PF10828.3 gi|313126714|ref|YP_004036984.1| - 6.6 6.3 19.2 1 8.9 2.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2570) Nnf1 PF03980.9 gi|313126714|ref|YP_004036984.1| - 7 6.6 25.6 0.38 10.7 2.5 4.4 1 1 4 5 5 5 0 Nnf1 KxDL PF10241.4 gi|313126714|ref|YP_004036984.1| - 7.1 6.6 18.5 1.3 9.0 3.8 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein TMCO5 PF14992.1 gi|313126714|ref|YP_004036984.1| - 8 5.5 29.5 28 3.7 20.4 1.7 1 1 0 1 1 1 0 TMCO5 family DUF4337 PF14235.1 gi|313126714|ref|YP_004036984.1| - 8.8 6.1 21.0 6.7 6.5 7.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) DUF3086 PF11285.3 gi|313126714|ref|YP_004036984.1| - 9 5.0 16.8 2.4 6.8 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) Borrelia_P83 PF05262.6 gi|313126714|ref|YP_004036984.1| - 9.3 4.3 19.7 12 4.0 13.7 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein P4Ha_N PF08336.6 gi|313126714|ref|YP_004036984.1| - 9.4 6.0 15.5 21 4.9 4.0 2.6 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF1843 PF08898.5 gi|313126714|ref|YP_004036984.1| - 9.6 6.3 15.3 3.4 7.7 0.9 3.9 2 1 2 4 4 4 0 Domain of unknown function (DUF1843) Sporozoite_P67 PF05642.6 gi|313126715|ref|YP_004036985.1| - 0.25 9.1 7.7 0.38 8.5 0.1 2.0 1 1 0 2 2 2 0 Sporozoite P67 surface antigen SpoIIIAH PF12685.2 gi|313126715|ref|YP_004036985.1| - 0.38 10.2 11.2 1.1 8.7 0.1 2.2 2 0 0 2 2 2 0 SpoIIIAH-like protein AAA_3 PF07726.6 gi|313126716|ref|YP_004036986.1| - 1.5e-61 205.7 0.1 2.6e-61 204.9 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313126716|ref|YP_004036986.1| - 1.8e-11 43.9 0.0 3.2e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|313126716|ref|YP_004036986.1| - 2.1e-08 33.3 0.0 1.5e-07 30.5 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|313126716|ref|YP_004036986.1| - 1.8e-05 24.9 0.0 3.5e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|313126716|ref|YP_004036986.1| - 0.00071 19.0 0.0 0.0059 16.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|313126716|ref|YP_004036986.1| - 0.0014 17.7 0.1 0.0079 15.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|313126716|ref|YP_004036986.1| - 0.02 14.0 0.0 0.29 10.2 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF58 PF01882.13 gi|313126717|ref|YP_004036987.1| - 4.6e-20 71.5 0.2 1.4e-19 70.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|313126717|ref|YP_004036987.1| - 0.00012 21.3 1.2 0.00072 18.7 0.8 2.1 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|313126717|ref|YP_004036987.1| - 0.064 13.3 0.2 0.096 12.7 0.1 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain EamA PF00892.15 gi|313126719|ref|YP_004036989.1| - 8e-11 42.0 12.5 1e-10 41.7 8.7 1.2 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.9 gi|313126719|ref|YP_004036989.1| - 0.00045 19.2 5.5 0.00045 19.2 3.8 1.4 1 1 0 1 1 1 1 Magnesium transporter NIPA EmrE PF13536.1 gi|313126719|ref|YP_004036989.1| - 0.00071 19.7 9.4 0.00071 19.7 6.5 1.7 1 1 1 2 2 2 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|313126719|ref|YP_004036989.1| - 0.0028 17.4 3.8 0.005 16.6 2.6 1.4 1 1 0 1 1 1 1 Uncharacterised protein family UPF0546 TPT PF03151.11 gi|313126719|ref|YP_004036989.1| - 0.075 12.6 10.4 0.21 11.1 7.2 1.7 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF2721 PF11026.3 gi|313126719|ref|YP_004036989.1| - 0.32 10.6 5.7 0.072 12.7 0.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) AhpC-TSA PF00578.16 gi|313126720|ref|YP_004036990.1| - 7.1e-16 58.0 0.0 9.9e-16 57.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313126720|ref|YP_004036990.1| - 8.5e-12 44.8 0.0 1.1e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|313126720|ref|YP_004036990.1| - 1.4e-05 25.2 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|313126720|ref|YP_004036990.1| - 0.0049 16.9 0.0 0.0071 16.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like TatD_DNase PF01026.16 gi|313126720|ref|YP_004036990.1| - 0.057 12.6 0.0 0.076 12.1 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase RNA_binding PF01877.12 gi|313126721|ref|YP_004036991.1| - 2.9e-29 101.5 0.7 4.1e-29 101.0 0.5 1.2 1 0 0 1 1 1 1 RNA binding DUF1918 PF08940.6 gi|313126722|ref|YP_004036992.1| - 0.0056 15.9 0.1 0.0068 15.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) NUDIX PF00293.23 gi|313126723|ref|YP_004036993.1| - 1.4e-16 60.3 0.2 2.2e-16 59.7 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain ANTH PF07651.11 gi|313126723|ref|YP_004036993.1| - 0.16 10.6 0.1 0.2 10.3 0.1 1.1 1 0 0 1 1 1 0 ANTH domain Nudix_N_2 PF14803.1 gi|313126724|ref|YP_004036994.1| - 2.3e-05 24.0 0.9 0.051 13.2 0.0 2.3 2 0 0 2 2 2 2 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|313126724|ref|YP_004036994.1| - 0.0003 19.8 1.4 0.023 13.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|313126724|ref|YP_004036994.1| - 0.0013 18.3 0.9 1.1 8.9 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|313126724|ref|YP_004036994.1| - 0.0025 17.2 0.2 1.7 8.2 0.0 2.3 2 1 0 2 2 2 2 zinc-ribbon domain zf-Mss51 PF13824.1 gi|313126724|ref|YP_004036994.1| - 0.0044 16.8 0.6 0.58 10.0 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|313126724|ref|YP_004036994.1| - 0.0047 16.8 1.5 1.2 9.1 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|313126724|ref|YP_004036994.1| - 0.0078 16.0 0.4 0.028 14.2 0.3 1.8 1 1 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|313126724|ref|YP_004036994.1| - 0.012 15.3 0.6 0.11 12.3 0.4 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Terminase_GpA PF05876.7 gi|313126724|ref|YP_004036994.1| - 0.015 13.7 0.0 0.017 13.4 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_5 PF13719.1 gi|313126724|ref|YP_004036994.1| - 0.015 14.8 0.4 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.1 gi|313126724|ref|YP_004036994.1| - 0.017 14.7 1.4 0.044 13.4 0.2 1.9 2 0 0 2 2 2 0 Probable zinc-binding domain zf-dskA_traR PF01258.12 gi|313126724|ref|YP_004036994.1| - 0.018 14.7 0.5 2.3 8.0 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|313126724|ref|YP_004036994.1| - 0.022 14.4 0.6 1.8 8.2 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|313126724|ref|YP_004036994.1| - 0.034 13.8 0.7 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|313126724|ref|YP_004036994.1| - 0.043 13.7 0.3 4.4 7.3 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_3 PF14369.1 gi|313126724|ref|YP_004036994.1| - 0.047 13.6 2.7 0.51 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger CpXC PF14353.1 gi|313126724|ref|YP_004036994.1| - 0.056 13.4 0.2 4.3 7.3 0.0 2.1 2 0 0 2 2 2 0 CpXC protein IBR PF01485.16 gi|313126724|ref|YP_004036994.1| - 0.057 13.3 0.2 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 IBR domain Lar_restr_allev PF14354.1 gi|313126724|ref|YP_004036994.1| - 0.092 13.0 3.1 0.44 10.8 2.2 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_6 PF13912.1 gi|313126724|ref|YP_004036994.1| - 0.11 12.4 0.4 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.5 gi|313126724|ref|YP_004036994.1| - 0.12 11.9 1.2 1.7 8.2 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.21 gi|313126724|ref|YP_004036994.1| - 0.13 12.6 0.5 1.2 9.6 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|313126724|ref|YP_004036994.1| - 0.14 12.0 0.8 0.48 10.2 0.5 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|313126724|ref|YP_004036994.1| - 0.15 12.2 4.3 0.42 10.7 1.2 2.4 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-C4_Topoisom PF01396.14 gi|313126724|ref|YP_004036994.1| - 0.15 11.5 0.5 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Trm112p PF03966.11 gi|313126724|ref|YP_004036994.1| - 0.15 12.3 0.3 0.31 11.4 0.2 1.5 1 1 0 1 1 1 0 Trm112p-like protein Ribosomal_S27 PF01599.14 gi|313126724|ref|YP_004036994.1| - 0.16 11.8 0.4 9.2 6.1 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27a DUF35_N PF12172.3 gi|313126724|ref|YP_004036994.1| - 0.21 11.5 1.6 9.9 6.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|313126724|ref|YP_004036994.1| - 0.24 11.1 1.7 11 5.8 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-H2C2_2 PF13465.1 gi|313126724|ref|YP_004036994.1| - 0.25 11.7 1.7 9.5 6.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-NADH-PPase PF09297.6 gi|313126724|ref|YP_004036994.1| - 0.32 10.5 2.4 3.3 7.3 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-HYPF PF07503.7 gi|313126724|ref|YP_004036994.1| - 0.47 9.9 2.2 14 5.1 0.1 2.5 3 0 0 3 3 3 0 HypF finger Zn_Tnp_IS1 PF03811.8 gi|313126724|ref|YP_004036994.1| - 0.93 9.0 2.8 1.1 8.8 0.3 2.0 2 0 0 2 2 2 0 InsA N-terminal domain ADK_lid PF05191.9 gi|313126724|ref|YP_004036994.1| - 2.9 7.6 6.6 2.7 7.7 0.1 2.5 3 0 0 3 3 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|313126724|ref|YP_004036994.1| - 6.7 6.1 6.2 1.5e+02 1.8 4.3 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding Fer2 PF00111.22 gi|313126725|ref|YP_004036995.1| - 1.1e-08 34.6 0.5 1.8e-08 33.9 0.3 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|313126725|ref|YP_004036995.1| - 0.019 14.7 1.5 0.036 13.8 1.0 1.7 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|313126725|ref|YP_004036995.1| - 0.074 12.8 0.9 0.1 12.4 0.7 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Thioredoxin_4 PF13462.1 gi|313126726|ref|YP_004036996.1| - 7.4e-31 107.3 0.0 8.8e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|313126726|ref|YP_004036996.1| - 2.8e-11 43.3 1.9 1.7e-08 34.2 1.3 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|313126726|ref|YP_004036996.1| - 0.0014 18.8 0.1 0.0084 16.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|313126726|ref|YP_004036996.1| - 0.093 12.5 0.3 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin domain Redoxin PF08534.5 gi|313126727|ref|YP_004036997.1| - 1.5e-14 53.7 0.0 1.7e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|313126727|ref|YP_004036997.1| - 2.3e-10 40.4 0.0 3.1e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|313126727|ref|YP_004036997.1| - 4.6e-10 39.2 0.0 6.1e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_2 PF13098.1 gi|313126727|ref|YP_004036997.1| - 5.1e-07 29.8 0.0 6.5e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|313126727|ref|YP_004036997.1| - 3e-05 23.6 0.0 0.00018 21.1 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin DsbD PF02683.10 gi|313126728|ref|YP_004036998.1| - 1.4e-19 70.5 15.4 1.8e-19 70.2 10.7 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF3754 PF12576.3 gi|313126728|ref|YP_004036998.1| - 9.5 5.8 11.6 1.3e+02 2.1 8.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3754) CBS PF00571.23 gi|313126729|ref|YP_004036999.1| - 2.7e-22 78.2 7.8 1.3e-12 47.2 0.5 2.2 2 0 0 2 2 2 2 CBS domain TAT_signal PF10518.4 gi|313126731|ref|YP_004037001.1| - 0.0024 17.7 3.8 0.0067 16.3 2.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SCO1-SenC PF02630.9 gi|313126732|ref|YP_004037002.1| - 3.8e-10 39.6 0.0 5.2e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.4 gi|313126732|ref|YP_004037002.1| - 0.00031 20.4 5.9 0.0005 19.8 4.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MFS_1 PF07690.11 gi|313126733|ref|YP_004037003.1| - 1.1e-32 113.1 61.5 4.4e-20 71.6 20.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3482 PF11981.3 gi|313126733|ref|YP_004037003.1| - 0.88 8.7 3.1 1.9 7.6 2.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Aldo_ket_red PF00248.16 gi|313126734|ref|YP_004037004.1| - 2.8e-74 249.4 0.0 3.1e-74 249.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|313126734|ref|YP_004037004.1| - 0.03 14.4 0.0 2 8.5 0.0 2.3 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family RDD PF06271.7 gi|313126735|ref|YP_004037005.1| - 2.6e-18 66.2 1.8 2.6e-18 66.2 1.3 2.7 2 1 0 2 2 2 1 RDD family Kinocilin PF15033.1 gi|313126735|ref|YP_004037005.1| - 1.5 8.3 7.0 1.3 8.5 0.7 2.4 2 0 0 2 2 2 0 Kinocilin protein AMP-binding PF00501.23 gi|313126736|ref|YP_004037006.1| - 1.1e-80 271.0 0.0 1.5e-80 270.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313126736|ref|YP_004037006.1| - 6e-21 75.1 0.7 1.5e-20 73.9 0.4 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Creatininase PF02633.9 gi|313126737|ref|YP_004037007.1| - 1.1e-69 234.1 1.4 1.2e-69 233.9 0.9 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase LMWPc PF01451.16 gi|313126738|ref|YP_004037008.1| - 4.1e-28 98.4 0.0 4.6e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase CSD PF00313.17 gi|313126739|ref|YP_004037009.1| - 9.2e-21 73.4 0.2 1e-20 73.2 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|313126739|ref|YP_004037009.1| - 0.0025 17.4 0.6 0.0038 16.9 0.4 1.4 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|313126739|ref|YP_004037009.1| - 0.042 13.7 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|313126739|ref|YP_004037009.1| - 0.047 13.1 1.6 0.071 12.6 1.1 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain NikR_C PF08753.6 gi|313126740|ref|YP_004037010.1| - 9.6e-10 38.2 0.1 1.6e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|313126740|ref|YP_004037010.1| - 0.00064 19.5 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF1024 PF06260.7 gi|313126740|ref|YP_004037010.1| - 0.013 15.6 0.3 0.022 14.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1024) NicO PF03824.11 gi|313126741|ref|YP_004037011.1| - 0.0019 17.5 25.4 0.0019 17.5 17.6 4.8 3 1 2 5 5 5 1 High-affinity nickel-transport protein DsbD_2 PF13386.1 gi|313126741|ref|YP_004037011.1| - 0.099 12.3 11.6 0.029 14.1 5.2 1.9 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region CBS PF00571.23 gi|313126742|ref|YP_004037012.1| - 0.00066 19.4 0.1 1.2 8.9 0.0 3.4 3 0 0 3 3 3 2 CBS domain DUF4559 PF15112.1 gi|313126742|ref|YP_004037012.1| - 0.026 13.7 0.3 0.064 12.4 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) HTH_DeoR PF08220.7 gi|313126743|ref|YP_004037013.1| - 0.098 12.2 0.0 4.3 6.9 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|313126743|ref|YP_004037013.1| - 0.12 12.0 0.2 2 8.2 0.0 2.7 3 0 0 3 3 3 0 Homeodomain-like domain Phage_integrase PF00589.17 gi|313126748|ref|YP_004037018.1| - 2.9e-38 131.2 0.2 4.4e-38 130.6 0.2 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|313126748|ref|YP_004037018.1| - 5.8e-06 26.5 0.0 1.3e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|313126748|ref|YP_004037018.1| - 3.6e-05 23.8 0.1 0.00014 21.9 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF2984 PF11203.3 gi|313126748|ref|YP_004037018.1| - 0.035 14.2 0.0 0.23 11.5 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2984) ApoLp-III PF07464.6 gi|313126749|ref|YP_004037019.1| - 0.043 13.8 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) UPF0184 PF03670.8 gi|313126749|ref|YP_004037019.1| - 0.52 10.5 2.2 2.3 8.4 0.1 2.6 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) CMD PF02627.15 gi|313126750|ref|YP_004037020.1| - 2e-10 40.3 0.1 4.6e-10 39.1 0.1 1.7 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Usp PF00582.21 gi|313126751|ref|YP_004037021.1| - 1.2e-59 200.5 12.9 2.2e-30 105.6 4.8 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF3013 PF11217.3 gi|313126751|ref|YP_004037021.1| - 0.0062 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3013) SRP54 PF00448.17 gi|313126751|ref|YP_004037021.1| - 0.013 14.9 0.0 2.2 7.7 0.0 2.5 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain Pterin_bind PF00809.17 gi|313126751|ref|YP_004037021.1| - 0.024 13.9 0.0 0.77 9.0 0.0 2.4 2 1 0 2 2 2 0 Pterin binding enzyme Acetyltransf_1 PF00583.19 gi|313126751|ref|YP_004037021.1| - 0.072 13.1 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|313126751|ref|YP_004037021.1| - 0.082 12.6 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein DUF457 PF04307.9 gi|313126752|ref|YP_004037022.1| - 4.4e-17 61.8 13.0 5.5e-17 61.5 9.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MS_channel PF00924.13 gi|313126753|ref|YP_004037023.1| - 6.6e-42 143.1 0.0 1.3e-41 142.2 0.0 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel FtsX PF02687.16 gi|313126753|ref|YP_004037023.1| - 1.2 8.8 6.4 3.2 7.5 0.2 3.0 1 1 2 3 3 3 0 FtsX-like permease family Copper-bind PF00127.15 gi|313126755|ref|YP_004037025.1| - 3.2e-15 56.1 0.1 1e-14 54.5 0.1 2.0 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|313126755|ref|YP_004037025.1| - 0.0063 16.4 2.2 0.0063 16.4 1.5 3.4 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|313126755|ref|YP_004037025.1| - 0.0064 16.3 0.1 0.05 13.4 0.0 2.3 1 1 0 1 1 1 1 Cupredoxin-like domain Flg_hook PF02120.11 gi|313126755|ref|YP_004037025.1| - 0.23 11.1 3.1 2.8 7.6 0.1 3.6 4 0 0 4 4 4 0 Flagellar hook-length control protein FliK Xan_ur_permease PF00860.15 gi|313126756|ref|YP_004037026.1| - 1.9e-72 243.9 42.1 9e-72 241.6 29.2 1.9 1 1 0 1 1 1 1 Permease family CheW PF01584.14 gi|313126757|ref|YP_004037027.1| - 3e-27 94.7 0.1 3.7e-27 94.4 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.12 gi|313126758|ref|YP_004037028.1| - 3.2e-59 199.3 0.9 3.2e-59 199.3 0.6 1.9 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|313126758|ref|YP_004037028.1| - 4.3e-26 91.1 1.4 9.5e-26 90.0 0.6 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|313126759|ref|YP_004037029.1| - 1.8e-22 79.1 0.1 4.8e-22 77.7 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|313126759|ref|YP_004037029.1| - 2e-19 69.3 0.6 2e-19 69.3 0.4 2.1 2 0 0 2 2 2 1 Hpt domain CheW PF01584.14 gi|313126759|ref|YP_004037029.1| - 3.2e-18 65.5 1.9 6e-18 64.6 1.3 1.4 1 0 0 1 1 1 1 CheW-like domain H-kinase_dim PF02895.9 gi|313126759|ref|YP_004037029.1| - 7e-09 35.8 4.2 7e-09 35.8 2.9 2.3 3 0 0 3 3 3 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|313126759|ref|YP_004037029.1| - 1.4e-06 28.0 0.0 5.7e-06 26.1 0.0 2.2 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|313126759|ref|YP_004037029.1| - 0.0016 18.2 0.1 0.0064 16.2 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Macoilin PF09726.4 gi|313126759|ref|YP_004037029.1| - 2.2 6.4 9.3 3.1 5.9 6.5 1.1 1 0 0 1 1 1 0 Transmembrane protein CheR PF01739.13 gi|313126760|ref|YP_004037030.1| - 1.1e-50 171.6 0.0 1.4e-50 171.2 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|313126760|ref|YP_004037030.1| - 1.7e-10 40.1 2.2 4.3e-10 38.8 1.5 1.7 1 1 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|313126760|ref|YP_004037030.1| - 1.2e-06 28.8 0.0 6.4e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126760|ref|YP_004037030.1| - 0.00014 22.2 0.0 0.00038 20.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313126760|ref|YP_004037030.1| - 0.00015 22.3 0.1 0.00077 20.0 0.0 2.2 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126760|ref|YP_004037030.1| - 0.00049 19.7 0.0 0.33 10.5 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126760|ref|YP_004037030.1| - 0.00086 19.0 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313126760|ref|YP_004037030.1| - 0.0076 16.7 0.0 0.11 13.0 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Acetyltransf_6 PF13480.1 gi|313126760|ref|YP_004037030.1| - 0.014 15.3 0.3 0.032 14.2 0.2 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NodS PF05401.6 gi|313126760|ref|YP_004037030.1| - 0.016 14.6 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) CheF-arch PF04283.7 gi|313126761|ref|YP_004037031.1| - 2.6e-56 190.3 0.0 4e-56 189.7 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_4 PF06713.6 gi|313126761|ref|YP_004037031.1| - 0.018 14.8 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain CheF-arch PF04283.7 gi|313126762|ref|YP_004037032.1| - 6.2e-36 123.6 0.1 1.1e-35 122.8 0.1 1.4 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea SHOCT PF09851.4 gi|313126762|ref|YP_004037032.1| - 0.13 11.7 2.4 0.29 10.6 1.7 1.5 1 0 0 1 1 1 0 Short C-terminal domain T2SF PF00482.18 gi|313126763|ref|YP_004037033.1| - 1.2e-12 47.7 12.0 9.3e-10 38.4 0.2 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|313126764|ref|YP_004037034.1| - 1.1e-45 155.6 0.0 1.6e-45 155.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|313126764|ref|YP_004037034.1| - 0.0014 18.1 0.0 0.0033 16.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313126764|ref|YP_004037034.1| - 0.0014 18.6 0.0 0.018 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126764|ref|YP_004037034.1| - 0.0018 18.3 0.0 0.0055 16.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|313126764|ref|YP_004037034.1| - 0.012 15.9 0.0 0.055 13.7 0.0 2.1 2 0 0 2 2 2 0 ABC transporter Dynamin_N PF00350.18 gi|313126764|ref|YP_004037034.1| - 0.053 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.13 gi|313126764|ref|YP_004037034.1| - 0.056 12.9 0.0 0.17 11.3 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AIG1 PF04548.11 gi|313126764|ref|YP_004037034.1| - 0.074 12.1 0.0 0.17 10.9 0.0 1.6 1 0 0 1 1 1 0 AIG1 family GTP_EFTU PF00009.22 gi|313126764|ref|YP_004037034.1| - 0.077 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.7 gi|313126764|ref|YP_004037034.1| - 0.099 11.7 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|313126764|ref|YP_004037034.1| - 0.14 11.8 0.0 0.37 10.4 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|313126764|ref|YP_004037034.1| - 0.2 11.9 2.9 0.21 11.8 0.1 2.3 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|313126764|ref|YP_004037034.1| - 0.43 11.4 3.1 3.9 8.3 0.0 3.2 2 1 1 3 3 3 0 AAA domain KaiC PF06745.8 gi|313126765|ref|YP_004037035.1| - 3.5e-16 58.9 0.1 5.5e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|313126765|ref|YP_004037035.1| - 1.5e-05 24.4 0.0 4.9e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|313126765|ref|YP_004037035.1| - 1.6e-05 24.4 0.0 3.2e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|313126765|ref|YP_004037035.1| - 0.00012 21.7 0.2 0.0026 17.4 0.2 2.2 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|313126765|ref|YP_004037035.1| - 0.0019 18.3 0.1 0.0067 16.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313126765|ref|YP_004037035.1| - 0.027 14.4 0.8 0.091 12.7 0.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain FF PF01846.14 gi|313126765|ref|YP_004037035.1| - 0.032 14.1 0.1 0.17 11.8 0.1 2.1 1 1 1 2 2 2 0 FF domain Resolvase PF00239.16 gi|313126765|ref|YP_004037035.1| - 0.083 12.7 0.1 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain DAP3 PF10236.4 gi|313126765|ref|YP_004037035.1| - 0.094 11.6 0.1 0.89 8.4 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Arch_flagellin PF01917.11 gi|313126766|ref|YP_004037036.1| - 2.7e-12 46.7 4.5 4.8e-12 45.9 3.1 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|313126766|ref|YP_004037036.1| - 0.021 14.8 1.4 0.035 14.1 1.0 1.4 1 1 0 1 1 1 0 CARDB DUF756 PF05506.7 gi|313126766|ref|YP_004037036.1| - 0.065 13.7 0.3 0.11 13.0 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF756) Glyco_hydro_114 PF03537.8 gi|313126766|ref|YP_004037036.1| - 0.081 12.7 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 Gram_pos_anchor PF00746.16 gi|313126766|ref|YP_004037036.1| - 9.4 6.1 6.0 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Gram positive anchor Arch_flagellin PF01917.11 gi|313126767|ref|YP_004037037.1| - 1.8e-08 34.2 5.3 1.9e-07 30.9 3.7 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin FlaC_arch PF05377.6 gi|313126768|ref|YP_004037038.1| - 1e-19 70.1 1.0 2.7e-19 68.8 0.7 1.8 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Arch_fla_DE PF04659.8 gi|313126768|ref|YP_004037038.1| - 1.3e-17 63.3 0.0 3.2e-17 62.1 0.0 1.7 1 0 0 1 1 1 1 Archaeal flagella protein DUF904 PF06005.7 gi|313126768|ref|YP_004037038.1| - 0.0074 16.5 0.7 0.0074 16.5 0.5 3.2 4 0 0 4 4 4 1 Protein of unknown function (DUF904) NPV_P10 PF05531.7 gi|313126768|ref|YP_004037038.1| - 0.0077 16.4 0.5 0.017 15.3 0.3 1.5 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|313126768|ref|YP_004037038.1| - 0.033 14.3 0.4 0.084 13.0 0.3 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TBPIP PF07106.8 gi|313126768|ref|YP_004037038.1| - 0.43 10.1 3.0 0.29 10.6 0.1 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) KaiC PF06745.8 gi|313126769|ref|YP_004037039.1| - 5.2e-51 172.9 0.0 5.9e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|313126769|ref|YP_004037039.1| - 1.2e-09 37.8 0.0 4e-09 36.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|313126769|ref|YP_004037039.1| - 0.00078 18.5 0.0 0.00085 18.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|313126769|ref|YP_004037039.1| - 0.0098 15.7 0.2 0.046 13.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|313126769|ref|YP_004037039.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|313126769|ref|YP_004037039.1| - 0.039 13.5 1.2 0.062 12.8 0.4 1.7 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|313126769|ref|YP_004037039.1| - 0.05 13.0 0.0 0.096 12.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family GvpD PF07088.6 gi|313126769|ref|YP_004037039.1| - 0.052 11.8 0.5 0.34 9.1 0.3 2.0 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA_22 PF13401.1 gi|313126769|ref|YP_004037039.1| - 0.09 12.9 0.1 0.13 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|313126769|ref|YP_004037039.1| - 0.13 12.0 0.1 0.28 10.9 0.0 1.7 1 1 0 1 1 1 0 Part of AAA domain Arch_flagellin PF01917.11 gi|313126770|ref|YP_004037040.1| - 4.1e-31 108.0 14.5 5.3e-31 107.7 10.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|313126771|ref|YP_004037041.1| - 2.5e-30 105.5 11.3 3.1e-30 105.2 7.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|313126772|ref|YP_004037042.1| - 6.5e-31 107.4 12.7 8.2e-31 107.1 8.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Cas_GSU0053 PF09617.5 gi|313126772|ref|YP_004037042.1| - 0.031 14.0 0.2 0.044 13.5 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein GSU0053 (Cas_GSU0053) DUF4098 PF13345.1 gi|313126772|ref|YP_004037042.1| - 0.86 9.5 7.7 0.082 12.8 1.7 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4098) Arch_flagellin PF01917.11 gi|313126773|ref|YP_004037043.1| - 9.1e-35 120.0 11.9 1.1e-34 119.7 8.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin HTH_20 PF12840.2 gi|313126774|ref|YP_004037044.1| - 7e-09 35.3 0.1 1.2e-08 34.6 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313126774|ref|YP_004037044.1| - 8e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|313126774|ref|YP_004037044.1| - 0.0006 19.1 0.0 0.001 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313126774|ref|YP_004037044.1| - 0.0028 17.3 0.0 0.0053 16.4 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|313126774|ref|YP_004037044.1| - 0.004 16.7 0.0 0.0065 16.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313126774|ref|YP_004037044.1| - 0.0062 16.1 0.1 0.0094 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4368 PF14287.1 gi|313126774|ref|YP_004037044.1| - 0.065 13.0 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4368) HTH_23 PF13384.1 gi|313126774|ref|YP_004037044.1| - 0.079 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Response_reg PF00072.19 gi|313126776|ref|YP_004037046.1| - 6.9e-30 103.3 0.2 7.7e-30 103.1 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheC PF04509.7 gi|313126777|ref|YP_004037047.1| - 1.3e-25 88.8 0.3 1.2e-13 50.5 0.1 3.1 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|313126777|ref|YP_004037047.1| - 3.1e-21 75.0 0.1 3.3e-09 36.4 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheD PF03975.8 gi|313126778|ref|YP_004037048.1| - 7.3e-31 106.2 0.1 9.7e-31 105.8 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Arch_fla_DE PF04659.8 gi|313126779|ref|YP_004037049.1| - 2.4e-25 88.2 0.1 3.8e-25 87.6 0.1 1.2 1 0 0 1 1 1 1 Archaeal flagella protein DUF835 PF05763.7 gi|313126779|ref|YP_004037049.1| - 0.029 13.9 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) MreB_Mbl PF06723.8 gi|313126780|ref|YP_004037050.1| - 0.011 14.3 0.0 0.017 13.7 0.0 1.5 1 1 0 1 1 1 0 MreB/Mbl protein CheX PF13690.1 gi|313126780|ref|YP_004037050.1| - 0.026 14.3 0.0 0.083 12.7 0.0 1.8 2 0 0 2 2 2 0 Chemotaxis phosphatase CheX BcrAD_BadFG PF01869.15 gi|313126780|ref|YP_004037050.1| - 0.038 13.2 0.0 0.24 10.6 0.0 2.1 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family EH_Signature PF15611.1 gi|313126780|ref|YP_004037050.1| - 0.13 11.2 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 EH_Signature domain PfkB PF00294.19 gi|313126781|ref|YP_004037051.1| - 1.2e-65 221.5 0.1 1.4e-65 221.3 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|313126781|ref|YP_004037051.1| - 0.00029 20.1 0.0 0.0004 19.6 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Methyltransf_5 PF01795.14 gi|313126781|ref|YP_004037051.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family PAS_4 PF08448.5 gi|313126783|ref|YP_004037053.1| - 2.7e-23 82.1 11.0 9.6e-12 44.9 0.2 3.4 4 1 0 4 4 4 2 PAS fold PAS PF00989.19 gi|313126783|ref|YP_004037053.1| - 2.6e-22 78.7 0.0 8.3e-10 38.4 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|313126783|ref|YP_004037053.1| - 3.8e-20 72.2 0.0 4.4e-10 39.8 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|313126783|ref|YP_004037053.1| - 3.4e-13 49.3 0.1 2.1e-12 46.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313126783|ref|YP_004037053.1| - 1.9e-11 43.8 0.1 1.7e-10 40.8 0.0 2.7 4 0 0 4 4 3 1 PAS fold HATPase_c_2 PF13581.1 gi|313126783|ref|YP_004037053.1| - 9.9e-09 35.0 0.2 4.5e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|313126783|ref|YP_004037053.1| - 1e-08 34.7 0.0 0.0079 16.0 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|313126783|ref|YP_004037053.1| - 1.6e-06 28.1 1.4 0.0067 16.4 0.0 4.1 3 2 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|313126783|ref|YP_004037053.1| - 2.9e-06 27.1 0.9 8e-06 25.7 0.6 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|313126783|ref|YP_004037053.1| - 0.00018 21.1 0.1 0.0017 17.9 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|313126783|ref|YP_004037053.1| - 0.14 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 GHKL domain SPOB_a PF14689.1 gi|313126783|ref|YP_004037053.1| - 0.14 11.7 0.5 0.3 10.6 0.4 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acyl-CoA_dh_1 PF00441.19 gi|313126784|ref|YP_004037054.1| - 8.3e-48 162.2 1.1 1.1e-47 161.8 0.8 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313126784|ref|YP_004037054.1| - 2.6e-37 127.8 0.1 6.2e-37 126.6 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313126784|ref|YP_004037054.1| - 8.8e-18 63.5 0.1 1.8e-17 62.5 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|313126784|ref|YP_004037054.1| - 3.4e-15 56.4 2.0 5.9e-15 55.6 1.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.1 gi|313126784|ref|YP_004037054.1| - 0.068 13.4 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal Usp PF00582.21 gi|313126785|ref|YP_004037055.1| - 1.5e-38 132.1 2.9 1.6e-38 132.0 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family SpoVAE PF14097.1 gi|313126785|ref|YP_004037055.1| - 0.064 12.6 0.4 1.9 7.8 0.0 2.1 2 0 0 2 2 2 0 Stage V sporulation protein AE1 RIO1 PF01163.17 gi|313126786|ref|YP_004037056.1| - 5.7e-12 45.3 0.0 9.4e-12 44.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|313126786|ref|YP_004037056.1| - 5.3e-07 28.8 0.0 8.3e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|313126786|ref|YP_004037056.1| - 6.9e-07 29.2 1.3 0.00013 21.8 0.2 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|313126786|ref|YP_004037056.1| - 1.8e-06 27.3 0.0 2.4e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|313126786|ref|YP_004037056.1| - 8.6e-05 21.8 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|313126786|ref|YP_004037056.1| - 0.0014 17.7 0.0 0.0015 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH_6_hur PF04655.9 gi|313126786|ref|YP_004037056.1| - 0.087 11.9 0.4 0.53 9.3 0.1 1.9 1 1 1 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase DUF4112 PF13430.1 gi|313126787|ref|YP_004037057.1| - 3.5e-37 126.5 0.4 4e-37 126.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) ABC_tran PF00005.22 gi|313126788|ref|YP_004037058.1| - 4.3e-34 117.7 0.0 6.1e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126788|ref|YP_004037058.1| - 7.6e-15 55.6 0.1 3.5e-06 27.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313126788|ref|YP_004037058.1| - 5.7e-05 23.1 0.4 0.00054 20.0 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|313126788|ref|YP_004037058.1| - 0.00011 21.6 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313126788|ref|YP_004037058.1| - 0.00026 21.3 0.0 0.0004 20.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313126788|ref|YP_004037058.1| - 0.00037 19.8 0.0 0.025 13.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313126788|ref|YP_004037058.1| - 0.0011 19.1 0.1 0.025 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|313126788|ref|YP_004037058.1| - 0.0022 17.1 0.0 0.0037 16.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|313126788|ref|YP_004037058.1| - 0.0025 18.0 0.1 0.037 14.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313126788|ref|YP_004037058.1| - 0.0036 16.7 0.4 0.29 10.5 0.1 2.5 1 1 2 3 3 3 1 AAA-like domain AAA_15 PF13175.1 gi|313126788|ref|YP_004037058.1| - 0.0039 16.3 0.0 0.054 12.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|313126788|ref|YP_004037058.1| - 0.0095 15.3 0.1 0.022 14.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|313126788|ref|YP_004037058.1| - 0.014 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|313126788|ref|YP_004037058.1| - 0.034 13.8 0.0 0.067 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|313126788|ref|YP_004037058.1| - 0.036 13.9 0.0 0.075 12.9 0.0 1.6 1 1 1 2 2 2 0 AAA domain DUF3215 PF11503.3 gi|313126788|ref|YP_004037058.1| - 0.04 13.5 0.2 0.27 10.8 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3215) AAA_30 PF13604.1 gi|313126788|ref|YP_004037058.1| - 0.05 13.1 0.0 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|313126788|ref|YP_004037058.1| - 0.05 12.9 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|313126788|ref|YP_004037058.1| - 0.055 13.3 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|313126788|ref|YP_004037058.1| - 0.059 11.9 0.1 2.3 6.7 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|313126788|ref|YP_004037058.1| - 0.08 12.5 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|313126788|ref|YP_004037058.1| - 0.086 11.9 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|313126788|ref|YP_004037058.1| - 0.18 12.6 2.6 0.19 12.5 0.5 2.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|313126789|ref|YP_004037059.1| - 1.2e-30 106.5 0.0 1.7e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126789|ref|YP_004037059.1| - 4.8e-12 46.4 1.4 5e-05 23.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|313126789|ref|YP_004037059.1| - 1.3e-09 37.5 0.0 2.5e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|313126789|ref|YP_004037059.1| - 1.3e-05 24.5 0.3 0.00021 20.6 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313126789|ref|YP_004037059.1| - 0.00045 19.7 0.2 0.001 18.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313126789|ref|YP_004037059.1| - 0.0032 17.8 1.3 0.0051 17.1 0.9 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|313126789|ref|YP_004037059.1| - 0.0052 16.2 0.0 0.0065 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|313126789|ref|YP_004037059.1| - 0.011 14.8 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|313126789|ref|YP_004037059.1| - 0.054 13.4 0.0 0.086 12.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|313126789|ref|YP_004037059.1| - 0.061 13.3 0.0 0.24 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|313126789|ref|YP_004037059.1| - 0.084 11.9 0.1 4.3 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|313126789|ref|YP_004037059.1| - 0.11 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|313126790|ref|YP_004037060.1| - 6.7e-50 169.5 28.2 6.7e-50 169.5 19.6 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF3159 PF11361.3 gi|313126790|ref|YP_004037060.1| - 0.0061 16.0 2.9 0.0061 16.0 2.0 2.8 2 1 0 3 3 3 1 Protein of unknown function (DUF3159) BPD_transp_2 PF02653.11 gi|313126791|ref|YP_004037061.1| - 4.1e-40 137.4 42.4 4.8e-40 137.2 29.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Trp_oprn_chp PF09534.5 gi|313126791|ref|YP_004037061.1| - 0.02 14.5 2.3 0.02 14.5 1.6 3.0 3 1 1 4 4 4 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF997 PF06196.7 gi|313126791|ref|YP_004037061.1| - 0.062 12.8 0.2 0.062 12.8 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF997) Peripla_BP_6 PF13458.1 gi|313126792|ref|YP_004037062.1| - 7.9e-39 133.9 9.1 9.3e-39 133.7 6.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|313126792|ref|YP_004037062.1| - 5.8e-29 100.9 0.3 7.3e-29 100.6 0.2 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|313126792|ref|YP_004037062.1| - 2.6e-09 36.3 2.8 6.5e-07 28.4 0.2 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain Imm5 PF14423.1 gi|313126792|ref|YP_004037062.1| - 0.037 13.6 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Immunity protein Imm5 Pro_dh PF01619.13 gi|313126793|ref|YP_004037063.1| - 2.6e-42 144.9 0.0 5.2e-42 143.9 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase PqqD PF05402.7 gi|313126793|ref|YP_004037063.1| - 0.021 14.8 2.5 0.2 11.6 0.1 2.8 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_10 PF04967.7 gi|313126794|ref|YP_004037064.1| - 2.2e-20 71.9 0.0 3.9e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313126794|ref|YP_004037064.1| - 0.00032 20.1 0.6 0.29 10.6 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_24 PF13412.1 gi|313126794|ref|YP_004037064.1| - 0.00091 18.5 0.1 0.0029 16.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313126794|ref|YP_004037064.1| - 0.002 17.7 0.4 0.012 15.3 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_psq PF05225.11 gi|313126794|ref|YP_004037064.1| - 0.0023 17.4 0.1 0.34 10.5 0.0 2.4 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_20 PF12840.2 gi|313126794|ref|YP_004037064.1| - 0.0033 17.1 0.4 0.01 15.6 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain TetR_N PF00440.18 gi|313126794|ref|YP_004037064.1| - 0.0036 16.9 1.0 0.017 14.7 0.0 2.5 2 1 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_5 PF01022.15 gi|313126794|ref|YP_004037064.1| - 0.016 14.8 0.1 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|313126794|ref|YP_004037064.1| - 0.025 13.8 0.1 0.069 12.4 0.0 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|313126794|ref|YP_004037064.1| - 0.06 12.6 0.0 0.3 10.4 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|313126794|ref|YP_004037064.1| - 0.061 12.8 0.0 0.18 11.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|313126794|ref|YP_004037064.1| - 0.092 13.1 0.0 0.29 11.5 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal HTH_23 PF13384.1 gi|313126794|ref|YP_004037064.1| - 0.094 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain BMC PF00936.14 gi|313126794|ref|YP_004037064.1| - 0.097 12.3 0.1 0.26 10.9 0.1 1.7 1 0 0 1 1 1 0 BMC domain HTH_11 PF08279.7 gi|313126794|ref|YP_004037064.1| - 0.11 12.1 0.0 0.36 10.5 0.0 1.8 1 0 0 1 1 1 0 HTH domain Coat_F PF07875.7 gi|313126794|ref|YP_004037064.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Coat F domain Aldedh PF00171.17 gi|313126795|ref|YP_004037065.1| - 7.6e-143 476.1 0.0 8.6e-143 476.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.1 gi|313126795|ref|YP_004037065.1| - 0.0027 17.3 0.2 0.0056 16.3 0.1 1.4 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.9 gi|313126795|ref|YP_004037065.1| - 0.0068 15.1 0.0 0.013 14.2 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Polyketide_cyc2 PF10604.4 gi|313126796|ref|YP_004037066.1| - 9e-17 61.5 0.6 1e-16 61.3 0.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|313126796|ref|YP_004037066.1| - 0.0001 22.2 0.2 0.00013 22.0 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|313126796|ref|YP_004037066.1| - 0.00015 21.4 0.0 0.00017 21.2 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF2505 PF10698.4 gi|313126796|ref|YP_004037066.1| - 0.016 14.6 0.2 0.43 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2505) FaeA PF04703.7 gi|313126797|ref|YP_004037067.1| - 0.00054 20.0 0.2 0.00066 19.7 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.1 gi|313126797|ref|YP_004037067.1| - 0.0069 15.7 0.4 0.028 13.7 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313126797|ref|YP_004037067.1| - 0.0074 15.8 0.2 0.019 14.4 0.1 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Myb_DNA-bind_6 PF13921.1 gi|313126797|ref|YP_004037067.1| - 0.021 14.9 0.1 0.025 14.6 0.1 1.2 1 0 0 1 1 1 0 Myb-like DNA-binding domain LexA_DNA_bind PF01726.11 gi|313126797|ref|YP_004037067.1| - 0.04 13.4 0.0 0.059 12.9 0.0 1.3 1 1 0 1 1 1 0 LexA DNA binding domain P22_AR_N PF10547.4 gi|313126797|ref|YP_004037067.1| - 0.071 12.9 0.0 0.077 12.8 0.0 1.1 1 0 0 1 1 1 0 P22_AR N-terminal domain DUF3270 PF11674.3 gi|313126798|ref|YP_004037068.1| - 1 9.4 3.2 1.2 9.1 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) DUF2910 PF11139.3 gi|313126798|ref|YP_004037068.1| - 1.1 8.3 8.3 1.3 8.1 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) YqzM PF14141.1 gi|313126798|ref|YP_004037068.1| - 2.5 7.9 6.7 6.8 6.5 2.3 2.2 1 1 1 2 2 2 0 YqzM-like protein YbgT_YccB PF08173.6 gi|313126798|ref|YP_004037068.1| - 3.5 7.5 9.7 0.3 10.9 0.7 2.7 2 1 0 2 2 2 0 Membrane bound YbgT-like protein LEA_2 PF03168.8 gi|313126799|ref|YP_004037069.1| - 2.4e-19 69.5 0.1 1.1e-09 38.5 0.0 2.4 2 0 0 2 2 2 2 Late embryogenesis abundant protein PapD_C PF02753.12 gi|313126799|ref|YP_004037069.1| - 0.0012 18.5 1.3 1.3 8.9 0.0 2.8 2 0 0 2 2 2 2 Pili assembly chaperone PapD, C-terminal domain PhoU PF01895.14 gi|313126801|ref|YP_004037071.1| - 1.8e-11 44.2 10.1 1.6e-10 41.2 0.0 2.7 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|313126801|ref|YP_004037071.1| - 3.7e-07 29.7 0.0 6.9e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NAD_kinase PF01513.16 gi|313126802|ref|YP_004037072.1| - 2e-42 144.9 0.1 2.3e-42 144.7 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|313126802|ref|YP_004037072.1| - 8e-05 22.0 0.6 8e-05 22.0 0.4 2.7 2 1 1 3 3 3 1 Diacylglycerol kinase catalytic domain ThiS PF02597.15 gi|313126802|ref|YP_004037072.1| - 0.0014 18.9 0.2 0.0063 16.9 0.1 2.1 2 0 0 2 2 2 1 ThiS family Peripla_BP_4 PF13407.1 gi|313126802|ref|YP_004037072.1| - 0.0064 15.8 1.1 0.046 13.0 0.6 2.3 2 1 1 3 3 3 1 Periplasmic binding protein domain TisB_toxin PF13939.1 gi|313126803|ref|YP_004037073.1| - 0.12 12.0 0.3 0.15 11.8 0.2 1.2 1 0 0 1 1 1 0 Toxin TisB, type I toxin-antitoxin system MoCF_biosynth PF00994.19 gi|313126804|ref|YP_004037074.1| - 2.4e-37 127.5 0.2 3.5e-37 126.9 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain GDPD PF03009.12 gi|313126805|ref|YP_004037075.1| - 3.1e-30 105.5 0.0 4.3e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family DUF2110 PF09883.4 gi|313126807|ref|YP_004037077.1| - 2.8e-87 292.0 0.0 3.2e-87 291.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.12 gi|313126808|ref|YP_004037078.1| - 4.9e-21 74.2 0.3 1.1e-20 73.1 0.0 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|313126808|ref|YP_004037078.1| - 0.0025 17.6 0.3 0.0064 16.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70 region 3 DUF3618 PF12277.3 gi|313126808|ref|YP_004037078.1| - 0.082 12.9 4.3 3.2 7.8 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) GntR PF00392.16 gi|313126808|ref|YP_004037078.1| - 0.3 10.5 1.4 0.82 9.1 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Trm56 PF01994.11 gi|313126809|ref|YP_004037079.1| - 4.2e-48 162.0 0.0 5.6e-48 161.6 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Epimerase PF01370.16 gi|313126810|ref|YP_004037080.1| - 1.7e-52 178.2 0.0 2e-52 177.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313126810|ref|YP_004037080.1| - 3.8e-22 78.5 0.0 4.8e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|313126810|ref|YP_004037080.1| - 3.3e-14 53.3 0.0 4.4e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|313126810|ref|YP_004037080.1| - 6.8e-14 51.2 0.0 9.4e-14 50.7 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|313126810|ref|YP_004037080.1| - 4.8e-13 48.6 0.2 5.1e-12 45.2 0.2 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|313126810|ref|YP_004037080.1| - 6.3e-12 44.9 0.0 1.5e-10 40.3 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein TrkA_N PF02254.13 gi|313126810|ref|YP_004037080.1| - 7.4e-06 25.9 0.2 1.6e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.8 gi|313126810|ref|YP_004037080.1| - 1.5e-05 24.3 0.4 0.0017 17.6 0.1 2.1 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|313126810|ref|YP_004037080.1| - 3.4e-05 23.8 0.7 9.8e-05 22.3 0.0 2.1 3 0 0 3 3 3 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|313126810|ref|YP_004037080.1| - 0.00091 18.3 0.5 0.0066 15.4 0.3 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|313126810|ref|YP_004037080.1| - 0.0054 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|313126810|ref|YP_004037080.1| - 0.014 15.3 0.2 0.029 14.3 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF1188 PF06690.6 gi|313126810|ref|YP_004037080.1| - 0.017 14.2 0.2 0.34 10.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) Semialdhyde_dh PF01118.19 gi|313126810|ref|YP_004037080.1| - 0.068 13.4 0.2 0.17 12.2 0.2 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|313126810|ref|YP_004037080.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KR PF08659.5 gi|313126810|ref|YP_004037080.1| - 0.16 11.6 3.5 0.79 9.3 1.4 2.6 2 1 0 2 2 2 0 KR domain DUF2797 PF10977.3 gi|313126811|ref|YP_004037081.1| - 3.6e-50 170.7 2.9 3.4e-49 167.5 2.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) U79_P34 PF03064.11 gi|313126812|ref|YP_004037082.1| - 0.83 9.1 6.7 5.7 6.3 0.1 2.1 2 0 0 2 2 2 0 HSV U79 / HCMV P34 M_domain PF12938.2 gi|313126812|ref|YP_004037082.1| - 1 9.1 5.6 1.5 8.5 3.9 1.3 1 0 0 1 1 1 0 M domain of GW182 DUF4140 PF13600.1 gi|313126812|ref|YP_004037082.1| - 3.9 7.9 6.3 0.95 9.9 1.0 1.9 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|313126812|ref|YP_004037082.1| - 6.7 6.2 6.4 1.8 8.1 0.7 2.0 2 0 0 2 2 2 0 IncA protein Glycos_transf_1 PF00534.15 gi|313126813|ref|YP_004037083.1| - 4.1e-31 107.6 0.0 1.7e-30 105.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313126813|ref|YP_004037083.1| - 1.2e-17 64.2 0.0 1.8e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|313126813|ref|YP_004037083.1| - 9.3e-15 54.9 0.2 4.8e-14 52.6 0.0 2.1 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313126813|ref|YP_004037083.1| - 5.9e-14 52.5 2.8 1.8e-13 50.9 0.7 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|313126813|ref|YP_004037083.1| - 0.00047 20.3 0.1 0.0017 18.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|313126813|ref|YP_004037083.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like VWA_2 PF13519.1 gi|313126813|ref|YP_004037083.1| - 0.067 13.2 0.0 0.15 12.2 0.0 1.6 2 0 0 2 2 2 0 von Willebrand factor type A domain DUF4129 PF13559.1 gi|313126813|ref|YP_004037083.1| - 8.6 6.4 7.4 4.3 7.3 0.1 3.2 4 1 0 4 4 4 0 Domain of unknown function (DUF4129) Rpr2 PF04032.11 gi|313126814|ref|YP_004037084.1| - 1.4e-17 63.3 0.1 1.6e-17 63.1 0.1 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|313126814|ref|YP_004037084.1| - 0.0012 18.6 4.8 0.0019 17.9 3.3 1.4 1 1 0 1 1 1 1 Putative zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|313126814|ref|YP_004037084.1| - 0.053 13.3 0.3 0.48 10.2 0.0 2.1 2 1 0 2 2 2 0 Zinc-ribbon Prok-RING_1 PF14446.1 gi|313126814|ref|YP_004037084.1| - 0.073 12.8 1.6 1.5 8.6 1.1 2.2 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-DNL PF05180.7 gi|313126814|ref|YP_004037084.1| - 0.13 11.9 2.2 0.28 10.9 1.5 1.5 1 1 0 1 1 1 0 DNL zinc finger DZR PF12773.2 gi|313126814|ref|YP_004037084.1| - 0.15 11.8 1.1 0.28 11.0 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|313126814|ref|YP_004037084.1| - 0.23 11.7 2.1 0.39 11.0 1.4 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar CRS1_YhbY PF01985.16 gi|313126815|ref|YP_004037085.1| - 3e-18 65.5 0.3 3.6e-18 65.3 0.2 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.13 gi|313126816|ref|YP_004037086.1| - 1.3e-52 178.1 0.1 1.6e-52 177.8 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel INSIG PF07281.7 gi|313126816|ref|YP_004037086.1| - 0.0069 15.7 0.3 0.011 15.0 0.2 1.3 1 0 0 1 1 1 1 Insulin-induced protein (INSIG) GtrA PF04138.9 gi|313126816|ref|YP_004037086.1| - 0.066 13.1 4.0 0.11 12.3 2.8 1.4 1 0 0 1 1 1 0 GtrA-like protein DUF2910 PF11139.3 gi|313126816|ref|YP_004037086.1| - 0.13 11.3 8.1 0.2 10.7 5.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) HD PF01966.17 gi|313126817|ref|YP_004037087.1| - 6.3e-10 39.1 3.0 6.3e-10 39.1 2.1 1.7 2 1 0 2 2 2 1 HD domain AhpC-TSA PF00578.16 gi|313126818|ref|YP_004037088.1| - 5e-34 116.6 0.0 5.8e-34 116.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313126818|ref|YP_004037088.1| - 5.6e-24 84.3 0.1 6.7e-24 84.0 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|313126818|ref|YP_004037088.1| - 0.012 15.4 0.0 1.1 9.1 0.0 2.1 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF3103 PF11301.3 gi|313126818|ref|YP_004037088.1| - 0.11 11.1 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) DoxX PF07681.7 gi|313126819|ref|YP_004037089.1| - 4.3e-14 52.7 4.1 4.3e-14 52.7 2.9 1.4 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|313126819|ref|YP_004037089.1| - 0.00044 20.0 0.4 0.00095 19.0 0.3 1.6 1 1 0 1 1 1 1 HR-like lesion-inducing DoxX_2 PF13564.1 gi|313126819|ref|YP_004037089.1| - 0.0068 16.3 2.9 0.0068 16.3 2.0 1.5 2 0 0 2 2 2 1 DoxX-like family MttA_Hcf106 PF02416.11 gi|313126820|ref|YP_004037090.1| - 3.4e-15 54.8 0.0 4.8e-15 54.4 0.0 1.3 1 0 0 1 1 1 1 mttA/Hcf106 family DUF4611 PF15387.1 gi|313126820|ref|YP_004037090.1| - 0.053 13.6 1.5 0.057 13.5 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) T2SE PF00437.15 gi|313126821|ref|YP_004037091.1| - 1.1e-44 152.4 0.0 1.9e-44 151.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|313126821|ref|YP_004037091.1| - 3.6e-05 23.1 0.1 7.1e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|313126822|ref|YP_004037092.1| - 9.6e-27 93.3 7.2 1e-12 48.0 0.7 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F FA_desaturase PF00487.19 gi|313126822|ref|YP_004037092.1| - 0.025 14.0 8.3 1.2 8.5 0.4 3.9 4 0 0 4 4 4 0 Fatty acid desaturase DUF3357 PF11837.3 gi|313126822|ref|YP_004037092.1| - 0.27 11.1 0.1 0.27 11.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) Afaf PF15339.1 gi|313126822|ref|YP_004037092.1| - 0.31 10.6 2.0 10 5.6 0.1 2.3 2 0 0 2 2 2 0 Acrosome formation-associated factor DUF2583 PF10762.4 gi|313126822|ref|YP_004037092.1| - 4.5 7.4 5.9 1 9.5 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) DUF4519 PF15012.1 gi|313126823|ref|YP_004037093.1| - 0.00045 20.0 0.0 0.00075 19.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4519) PsaM PF07465.8 gi|313126823|ref|YP_004037093.1| - 0.87 9.2 2.8 9.5 5.9 0.8 2.3 2 0 0 2 2 2 0 Photosystem I protein M (PsaM) CRA PF06589.6 gi|313126826|ref|YP_004037096.1| - 0.033 13.5 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) DUF1628 PF07790.6 gi|313126828|ref|YP_004037098.1| - 0.11 13.2 0.0 0.27 12.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) HAMP PF00672.20 gi|313126829|ref|YP_004037099.1| - 0.032 14.3 0.1 0.032 14.3 0.0 1.6 2 0 0 2 2 2 0 HAMP domain DUF1294 PF06961.8 gi|313126829|ref|YP_004037099.1| - 0.22 11.4 0.9 3.9 7.5 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) TMF_TATA_bd PF12325.3 gi|313126830|ref|YP_004037100.1| - 0.056 13.1 0.0 0.063 13.0 0.0 1.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Sugarporin_N PF11471.3 gi|313126830|ref|YP_004037100.1| - 0.12 12.0 0.3 0.19 11.4 0.2 1.4 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension PsbH PF00737.15 gi|313126830|ref|YP_004037100.1| - 4.1 7.0 5.4 5.3 6.6 3.7 1.2 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein Beta_helix PF13229.1 gi|313126831|ref|YP_004037101.1| - 1.2e-26 93.3 42.4 1e-12 48.0 6.0 3.3 2 1 1 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|313126831|ref|YP_004037101.1| - 1.6e-22 79.7 44.0 1.8e-09 37.1 2.4 4.0 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) TAT_signal PF10518.4 gi|313126831|ref|YP_004037101.1| - 0.00043 20.0 3.7 0.00097 18.9 2.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_S15 PF00312.17 gi|313126832|ref|YP_004037102.1| - 4.5e-25 87.2 0.2 6.5e-25 86.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|313126832|ref|YP_004037102.1| - 2.1e-21 75.5 0.0 3.3e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain CRISPR_Cse1 PF09481.5 gi|313126832|ref|YP_004037102.1| - 0.073 11.8 0.0 0.098 11.3 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) Pcc1 PF09341.5 gi|313126834|ref|YP_004037104.1| - 0.015 15.3 0.4 0.018 15.0 0.3 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|313126835|ref|YP_004037105.1| - 3.2e-67 225.6 0.4 3.9e-67 225.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Copper-bind PF00127.15 gi|313126836|ref|YP_004037106.1| - 9.6e-18 64.2 0.0 1.7e-17 63.4 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313126836|ref|YP_004037106.1| - 9.2e-05 22.2 0.0 0.0036 17.1 0.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.15 gi|313126836|ref|YP_004037106.1| - 0.012 15.3 1.5 0.33 10.7 0.0 2.5 2 1 0 2 2 2 0 PKD domain TAT_signal PF10518.4 gi|313126836|ref|YP_004037106.1| - 0.018 15.0 5.5 0.037 14.0 3.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|313126836|ref|YP_004037106.1| - 0.12 11.6 0.7 0.29 10.3 0.5 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDP-OH_P_transf PF01066.16 gi|313126837|ref|YP_004037107.1| - 2.6e-10 40.4 6.7 2.6e-10 40.4 4.6 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PadR PF03551.9 gi|313126839|ref|YP_004037109.1| - 0.00028 20.5 0.1 0.00028 20.5 0.1 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|313126839|ref|YP_004037109.1| - 0.026 14.3 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|313126839|ref|YP_004037109.1| - 0.043 14.1 0.2 0.075 13.3 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain Acyl-CoA_dh_1 PF00441.19 gi|313126840|ref|YP_004037110.1| - 5e-49 166.2 1.2 8.2e-49 165.5 0.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313126840|ref|YP_004037110.1| - 1.8e-34 118.7 0.1 5.1e-34 117.2 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|313126840|ref|YP_004037110.1| - 1.8e-23 83.2 0.8 2.9e-23 82.6 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313126840|ref|YP_004037110.1| - 7e-20 70.2 0.9 3.3e-19 68.1 0.3 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain SQS_PSY PF00494.14 gi|313126841|ref|YP_004037111.1| - 9.1e-46 156.2 2.0 1.2e-45 155.9 1.4 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase COX3 PF00510.13 gi|313126842|ref|YP_004037112.1| - 7.7e-39 133.6 17.5 1.8e-38 132.4 12.1 1.6 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III TrkA_N PF02254.13 gi|313126843|ref|YP_004037113.1| - 6.4e-40 135.7 9.6 1.9e-22 79.4 0.2 3.6 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|313126843|ref|YP_004037113.1| - 1e-25 89.0 2.3 2.7e-13 49.3 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|313126843|ref|YP_004037113.1| - 3.5e-05 23.4 7.1 7.7e-05 22.3 4.9 1.5 1 0 0 1 1 1 1 Ion channel ThiF PF00899.16 gi|313126843|ref|YP_004037113.1| - 0.081 12.7 0.9 0.29 10.9 0.6 2.1 1 1 0 1 1 1 0 ThiF family NAD_binding_7 PF13241.1 gi|313126843|ref|YP_004037113.1| - 0.11 12.7 6.1 0.45 10.7 0.1 3.4 2 2 0 3 3 3 0 Putative NAD(P)-binding FA_desaturase PF00487.19 gi|313126844|ref|YP_004037114.1| - 1.3 8.4 4.9 1.2 8.5 2.9 1.3 1 1 0 1 1 1 0 Fatty acid desaturase DUF4149 PF13664.1 gi|313126844|ref|YP_004037114.1| - 1.5 8.9 5.2 0.88 9.6 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) Penicil_amidase PF01804.13 gi|313126845|ref|YP_004037115.1| - 6.2e-169 564.4 16.1 7.8e-169 564.1 11.1 1.0 1 0 0 1 1 1 1 Penicillin amidase YtpI PF14007.1 gi|313126846|ref|YP_004037116.1| - 2.2 8.2 5.7 0.73 9.7 1.9 1.6 1 1 1 2 2 2 0 YtpI-like protein ATP1G1_PLM_MAT8 PF02038.11 gi|313126846|ref|YP_004037116.1| - 5.3 6.1 6.1 16 4.5 0.3 2.5 2 1 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF547 PF04784.9 gi|313126847|ref|YP_004037117.1| - 8.3e-26 90.1 0.0 1.2e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 IncA PF04156.9 gi|313126848|ref|YP_004037118.1| - 0.43 10.1 20.8 0.95 9.0 14.4 1.5 1 0 0 1 1 1 0 IncA protein V_ATPase_I PF01496.14 gi|313126848|ref|YP_004037118.1| - 4.2 5.0 11.7 6.1 4.5 8.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HTH_12 PF08461.5 gi|313126849|ref|YP_004037119.1| - 0.0017 18.0 0.1 0.0038 16.9 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|313126849|ref|YP_004037119.1| - 0.0074 15.6 0.0 0.016 14.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313126849|ref|YP_004037119.1| - 0.016 14.9 0.2 0.031 13.9 0.1 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|313126849|ref|YP_004037119.1| - 0.028 13.9 0.1 0.054 13.0 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_15 PF12324.3 gi|313126849|ref|YP_004037119.1| - 0.049 13.2 0.0 0.26 10.9 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase MotA_activ PF09114.5 gi|313126849|ref|YP_004037119.1| - 0.05 13.3 0.0 0.058 13.1 0.0 1.3 1 1 0 1 1 1 0 Transcription factor MotA, activation domain HTH_5 PF01022.15 gi|313126849|ref|YP_004037119.1| - 0.066 12.8 0.2 0.17 11.5 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313126849|ref|YP_004037119.1| - 0.094 12.5 0.6 0.34 10.7 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Laminin_II PF06009.7 gi|313126849|ref|YP_004037119.1| - 0.15 11.8 1.2 0.54 10.0 0.1 1.9 2 0 0 2 2 2 0 Laminin Domain II Adenylsucc_synt PF00709.16 gi|313126850|ref|YP_004037120.1| - 2.1e-150 501.0 0.0 2.4e-150 500.9 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Bac_globin PF01152.16 gi|313126851|ref|YP_004037121.1| - 2.4e-27 95.3 0.0 2.7e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|313126851|ref|YP_004037121.1| - 0.00014 21.5 0.3 0.0004 20.0 0.2 1.8 1 1 0 1 1 1 1 Protoglobin Trm112p PF03966.11 gi|313126852|ref|YP_004037122.1| - 0.0022 18.3 0.1 0.005 17.1 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein DUF4285 PF14113.1 gi|313126854|ref|YP_004037124.1| - 0.12 12.3 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4285) CbiX PF01903.12 gi|313126855|ref|YP_004037125.1| - 2.3e-41 140.1 0.5 4.5e-20 71.7 0.0 2.4 3 0 0 3 3 3 2 CbiX CbiK PF06180.6 gi|313126855|ref|YP_004037125.1| - 2.9e-07 29.8 0.0 0.0014 17.7 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) tRNA-synt_1e PF01406.14 gi|313126857|ref|YP_004037127.1| - 9e-103 343.5 0.2 6.7e-102 340.6 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|313126857|ref|YP_004037127.1| - 1.6e-12 47.4 1.3 1.6e-12 47.4 0.9 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|313126857|ref|YP_004037127.1| - 4e-11 42.2 0.6 7e-05 21.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|313126857|ref|YP_004037127.1| - 1.4e-06 27.2 0.0 0.00051 18.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|313126857|ref|YP_004037127.1| - 0.00041 19.2 0.4 0.31 9.8 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1 PF00133.17 gi|313126857|ref|YP_004037127.1| - 0.002 16.1 0.2 0.0077 14.2 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) UVR PF02151.14 gi|313126857|ref|YP_004037127.1| - 0.032 13.7 0.2 0.11 12.0 0.1 2.0 1 0 0 1 1 1 0 UvrB/uvrC motif Dak1_2 PF13684.1 gi|313126857|ref|YP_004037127.1| - 0.035 13.0 0.2 0.82 8.5 0.0 2.3 2 0 0 2 2 2 0 Dihydroxyacetone kinase family TPR_7 PF13176.1 gi|313126857|ref|YP_004037127.1| - 0.14 12.0 3.1 14 5.7 0.1 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TipAS PF07739.8 gi|313126857|ref|YP_004037127.1| - 3.9 7.8 7.8 4.2 7.7 1.8 3.1 3 1 0 3 3 3 0 TipAS antibiotic-recognition domain DUF357 PF04010.8 gi|313126858|ref|YP_004037128.1| - 1.9e-28 97.9 0.0 2.2e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Acyl_transf_3 PF01757.17 gi|313126859|ref|YP_004037129.1| - 0.023 13.5 7.7 0.031 13.1 5.4 1.2 1 0 0 1 1 1 0 Acyltransferase family DUF1469 PF07332.6 gi|313126859|ref|YP_004037129.1| - 5.5 6.7 15.5 0.43 10.3 3.2 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1469) Pyr_redox_2 PF07992.9 gi|313126860|ref|YP_004037130.1| - 1.2e-25 90.5 0.3 1.8e-25 89.9 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313126860|ref|YP_004037130.1| - 9.1e-17 61.2 0.4 1.2e-14 54.4 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313126860|ref|YP_004037130.1| - 2e-13 50.8 0.0 2.9e-12 47.0 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313126860|ref|YP_004037130.1| - 3.9e-06 26.0 0.8 0.023 13.6 0.1 2.8 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313126860|ref|YP_004037130.1| - 0.00013 20.5 0.2 1.4 7.3 0.0 3.8 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|313126860|ref|YP_004037130.1| - 0.00025 20.9 0.0 0.0012 18.8 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|313126860|ref|YP_004037130.1| - 0.0018 17.1 7.4 0.1 11.3 0.0 3.3 2 1 2 4 4 4 2 FAD binding domain NAD_binding_7 PF13241.1 gi|313126860|ref|YP_004037130.1| - 0.0034 17.6 0.0 0.011 15.9 0.0 1.9 3 0 0 3 3 2 1 Putative NAD(P)-binding FMO-like PF00743.14 gi|313126860|ref|YP_004037130.1| - 0.0064 14.7 0.0 0.11 10.6 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Shikimate_DH PF01488.15 gi|313126860|ref|YP_004037130.1| - 0.034 14.2 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|313126860|ref|YP_004037130.1| - 0.035 12.9 0.5 30 3.3 0.0 3.6 4 0 0 4 4 4 0 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|313126860|ref|YP_004037130.1| - 0.076 11.6 0.8 3.5 6.1 0.0 3.0 3 0 0 3 3 3 0 Tryptophan halogenase Thi4 PF01946.12 gi|313126860|ref|YP_004037130.1| - 0.094 11.7 0.0 0.64 9.0 0.0 2.1 2 0 0 2 2 2 0 Thi4 family K_oxygenase PF13434.1 gi|313126860|ref|YP_004037130.1| - 0.18 10.7 0.1 0.88 8.4 0.0 2.1 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Zip PF02535.17 gi|313126862|ref|YP_004037132.1| - 4.4e-20 71.9 14.5 2e-19 69.7 1.6 2.8 1 1 1 2 2 2 2 ZIP Zinc transporter MazG PF03819.12 gi|313126863|ref|YP_004037133.1| - 1.7e-05 24.6 0.1 2.5e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|313126863|ref|YP_004037133.1| - 0.013 15.7 1.6 0.016 15.4 1.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase tRNA_edit PF04073.10 gi|313126864|ref|YP_004037134.1| - 6.4e-34 116.4 0.0 7.9e-34 116.1 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain ATP-grasp_5 PF13549.1 gi|313126866|ref|YP_004037136.1| - 2.6e-74 249.1 0.4 4.3e-74 248.4 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|313126866|ref|YP_004037136.1| - 1.6e-53 180.0 1.2 2.8e-53 179.2 0.2 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|313126866|ref|YP_004037136.1| - 4e-23 81.7 2.7 1.9e-22 79.6 0.2 3.0 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|313126866|ref|YP_004037136.1| - 1.5e-09 38.1 1.5 1.5e-09 38.1 1.0 2.6 4 0 0 4 4 4 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|313126866|ref|YP_004037136.1| - 0.0017 17.7 0.0 0.0045 16.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain AAA_26 PF13500.1 gi|313126867|ref|YP_004037137.1| - 1.2e-31 109.8 0.0 1.6e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.7 gi|313126867|ref|YP_004037137.1| - 2.5e-26 91.3 0.0 3.5e-25 87.6 0.0 2.4 2 1 0 2 2 2 1 DRTGG domain CbiA PF01656.18 gi|313126867|ref|YP_004037137.1| - 4.6e-06 26.1 0.0 8.1e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.9 gi|313126867|ref|YP_004037137.1| - 0.0015 17.5 0.2 0.49 9.2 0.0 2.1 2 0 0 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase CoA_binding_2 PF13380.1 gi|313126867|ref|YP_004037137.1| - 0.0094 16.1 0.1 0.13 12.4 0.0 2.6 1 1 1 2 2 2 1 CoA binding domain Usp PF00582.21 gi|313126867|ref|YP_004037137.1| - 0.06 13.5 0.4 1.1 9.3 0.0 2.7 2 1 0 2 2 2 0 Universal stress protein family SpoU_sub_bind PF08032.7 gi|313126867|ref|YP_004037137.1| - 0.068 13.3 0.0 0.3 11.2 0.0 2.1 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding Peptidase_M24 PF00557.19 gi|313126868|ref|YP_004037138.1| - 7.8e-65 218.3 0.6 1e-64 217.9 0.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|313126868|ref|YP_004037138.1| - 2.3e-29 102.5 0.0 4.2e-29 101.7 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CPSase_L_chain PF00289.17 gi|313126868|ref|YP_004037138.1| - 0.14 12.3 0.1 1 9.5 0.0 2.2 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain MFS_1 PF07690.11 gi|313126870|ref|YP_004037140.1| - 8.2e-59 199.0 59.5 9.2e-52 175.8 25.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|313126870|ref|YP_004037140.1| - 2.5e-11 42.6 18.1 2.2e-07 29.6 1.6 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|313126870|ref|YP_004037140.1| - 2.8e-11 42.6 3.2 2.8e-11 42.6 2.2 2.8 3 0 0 3 3 3 1 Sugar (and other) transporter Folate_carrier PF01770.13 gi|313126870|ref|YP_004037140.1| - 0.046 12.2 0.0 0.086 11.3 0.0 1.4 1 0 0 1 1 1 0 Reduced folate carrier MFS_3 PF05977.8 gi|313126870|ref|YP_004037140.1| - 0.23 9.5 22.3 0.0072 14.4 1.4 2.4 2 1 0 2 2 2 0 Transmembrane secretion effector Zn_Tnp_IS1595 PF12760.2 gi|313126871|ref|YP_004037141.1| - 0.051 13.3 3.4 1.6 8.5 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313126871|ref|YP_004037141.1| - 0.052 12.7 6.7 0.2 10.8 4.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313126871|ref|YP_004037141.1| - 0.058 13.0 0.5 8.9 6.0 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|313126871|ref|YP_004037141.1| - 0.063 13.2 2.7 0.16 11.9 1.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF2752 PF10825.3 gi|313126871|ref|YP_004037141.1| - 0.18 11.8 3.1 10 6.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) GATA PF00320.22 gi|313126871|ref|YP_004037141.1| - 0.22 10.8 2.0 5.5 6.4 0.2 2.2 2 0 0 2 2 2 0 GATA zinc finger zf-ISL3 PF14690.1 gi|313126871|ref|YP_004037141.1| - 0.23 11.5 0.9 1.4 8.9 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|313126871|ref|YP_004037141.1| - 0.28 10.4 3.4 5.9 6.1 0.0 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger TerY-C PF15616.1 gi|313126871|ref|YP_004037141.1| - 0.34 10.8 1.4 0.42 10.5 1.0 1.3 1 1 0 1 1 1 0 TerY-C metal binding domain Prim_Zn_Ribbon PF08273.7 gi|313126871|ref|YP_004037141.1| - 0.73 9.9 7.6 4.9 7.3 2.9 2.5 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.7 gi|313126871|ref|YP_004037141.1| - 0.78 9.1 4.6 2.2 7.6 0.8 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|313126871|ref|YP_004037141.1| - 0.79 9.3 3.2 17 5.1 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Sgf11 PF08209.6 gi|313126871|ref|YP_004037141.1| - 0.81 9.0 2.9 5.6 6.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.1 gi|313126871|ref|YP_004037141.1| - 2 7.9 7.4 0.66 9.5 0.8 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|313126871|ref|YP_004037141.1| - 2.3 7.6 5.6 0.7 9.2 0.3 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF3797 PF12677.2 gi|313126871|ref|YP_004037141.1| - 2.3 7.8 4.3 3.6 7.2 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Phage-tail_3 PF13550.1 gi|313126872|ref|YP_004037142.1| - 0.0053 16.5 0.2 0.0065 16.2 0.1 1.1 1 0 0 1 1 1 1 Putative phage tail protein DUF2066 PF09839.4 gi|313126872|ref|YP_004037142.1| - 0.086 11.9 0.1 0.1 11.7 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) CBS PF00571.23 gi|313126873|ref|YP_004037143.1| - 2e-25 88.2 6.3 1.5e-12 47.1 0.5 2.9 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|313126873|ref|YP_004037143.1| - 3.2e-10 39.9 0.3 1.1e-09 38.3 0.0 1.9 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|313126873|ref|YP_004037143.1| - 4.2e-05 23.4 0.1 0.00047 20.0 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease Dehyd-heme_bind PF09098.5 gi|313126873|ref|YP_004037143.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding DHHA1 PF02272.14 gi|313126874|ref|YP_004037144.1| - 3.9e-13 48.8 1.1 8.8e-13 47.7 0.1 2.1 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.15 gi|313126874|ref|YP_004037144.1| - 2.8e-12 46.4 0.0 4.6e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.13 gi|313126874|ref|YP_004037144.1| - 2.3e-06 27.5 0.0 6.1e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|313126874|ref|YP_004037144.1| - 8.8e-05 22.7 0.0 0.00018 21.7 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding MotB_plug PF13677.1 gi|313126874|ref|YP_004037144.1| - 0.047 13.0 0.1 0.091 12.0 0.1 1.4 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB Oxidored_q1 PF00361.15 gi|313126876|ref|YP_004037146.1| - 1.3e-58 198.4 15.9 1.3e-58 198.4 11.0 1.9 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|313126876|ref|YP_004037146.1| - 0.0012 18.3 1.6 0.0012 18.3 1.1 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|313126877|ref|YP_004037147.1| - 5.2e-67 225.9 20.3 5.2e-67 225.9 14.1 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|313126877|ref|YP_004037147.1| - 0.0029 17.4 2.3 0.0029 17.4 1.6 3.3 3 1 0 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|313126878|ref|YP_004037148.1| - 1.7e-75 253.8 9.2 1.7e-75 253.8 6.4 2.6 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|313126878|ref|YP_004037148.1| - 2e-14 52.8 0.1 1.9e-11 43.3 0.0 2.8 2 0 0 2 2 2 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|313126878|ref|YP_004037148.1| - 0.0018 17.8 0.0 0.0064 16.0 0.0 1.8 1 1 1 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q2 PF00420.19 gi|313126879|ref|YP_004037149.1| - 3.5e-23 81.0 5.8 3.9e-23 80.8 4.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q3 PF00499.15 gi|313126881|ref|YP_004037151.1| - 3.6e-14 52.7 4.6 4.9e-14 52.3 3.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|313126881|ref|YP_004037151.1| - 0.00052 19.9 11.1 0.001 19.0 7.7 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) YjgP_YjgQ PF03739.9 gi|313126881|ref|YP_004037151.1| - 1.2 7.7 9.0 1.5 7.4 6.2 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF4341 PF14241.1 gi|313126881|ref|YP_004037151.1| - 9.8 5.9 9.9 6.9 6.4 0.2 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4341) Fer4 PF00037.22 gi|313126882|ref|YP_004037152.1| - 2e-12 46.1 9.6 1.2e-06 27.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|313126882|ref|YP_004037152.1| - 2e-11 44.0 10.5 3.1e-11 43.4 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|313126882|ref|YP_004037152.1| - 2.5e-10 40.0 9.1 3.5e-10 39.5 6.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313126882|ref|YP_004037152.1| - 1.9e-09 37.1 10.8 3e-09 36.5 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|313126882|ref|YP_004037152.1| - 5.8e-09 36.5 5.3 3e-05 24.6 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|313126882|ref|YP_004037152.1| - 6.4e-09 35.9 11.5 1.4e-08 34.8 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313126882|ref|YP_004037152.1| - 3.3e-08 33.4 9.7 8.6e-08 32.1 6.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313126882|ref|YP_004037152.1| - 5.5e-08 32.3 13.1 0.0004 20.1 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|313126882|ref|YP_004037152.1| - 1.2e-07 31.1 9.7 0.00025 20.7 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|313126882|ref|YP_004037152.1| - 4.8e-07 29.6 8.7 0.0018 18.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|313126882|ref|YP_004037152.1| - 2.1e-05 24.7 12.0 0.011 16.0 8.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313126882|ref|YP_004037152.1| - 9.5e-05 22.7 12.1 0.019 15.3 1.3 2.3 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|313126882|ref|YP_004037152.1| - 0.00034 20.9 14.8 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|313126882|ref|YP_004037152.1| - 0.0027 18.2 8.9 0.21 12.1 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|313126882|ref|YP_004037152.1| - 0.052 13.9 12.5 0.41 11.0 0.9 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|313126883|ref|YP_004037153.1| - 6.5e-79 265.2 9.4 8.1e-79 264.9 6.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|313126884|ref|YP_004037154.1| - 8.6e-63 211.8 0.0 9.2e-41 139.6 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|313126884|ref|YP_004037154.1| - 1e-28 99.5 0.1 1.8e-28 98.7 0.1 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.10 gi|313126884|ref|YP_004037154.1| - 0.039 13.2 0.0 0.085 12.1 0.0 1.6 1 0 0 1 1 1 0 Autoinducer binding domain Oxidored_q6 PF01058.17 gi|313126885|ref|YP_004037155.1| - 9e-22 77.0 0.2 1.3e-21 76.5 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|313126886|ref|YP_004037156.1| - 2.5e-27 94.6 0.1 3.2e-27 94.3 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DuoxA PF10204.4 gi|313126886|ref|YP_004037156.1| - 1 8.3 4.9 0.41 9.6 1.8 1.3 2 0 0 2 2 2 0 Dual oxidase maturation factor AIRC PF00731.15 gi|313126887|ref|YP_004037157.1| - 2.9e-51 172.6 0.0 3.6e-51 172.4 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.17 gi|313126888|ref|YP_004037158.1| - 2.9e-51 173.2 0.0 4.1e-51 172.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|313126888|ref|YP_004037158.1| - 4.4e-19 68.9 0.1 8.3e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|313126888|ref|YP_004037158.1| - 2.9e-08 33.7 0.0 4.1e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|313126888|ref|YP_004037158.1| - 6.5e-08 31.6 0.0 5.2e-07 28.7 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|313126888|ref|YP_004037158.1| - 2.2e-07 30.1 0.0 5e-07 29.0 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|313126888|ref|YP_004037158.1| - 0.00026 21.3 0.1 0.0015 18.8 0.0 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain Dala_Dala_lig_C PF07478.8 gi|313126888|ref|YP_004037158.1| - 0.00027 20.4 0.0 0.00087 18.7 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus NAD_binding_10 PF13460.1 gi|313126888|ref|YP_004037158.1| - 0.009 16.0 0.3 0.017 15.1 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|313126888|ref|YP_004037158.1| - 0.0094 15.6 0.2 0.022 14.4 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|313126888|ref|YP_004037158.1| - 0.024 15.0 0.0 0.081 13.3 0.0 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PMT_2 PF13231.1 gi|313126889|ref|YP_004037159.1| - 5.6e-15 55.6 6.6 5.6e-15 55.6 4.6 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DMRL_synthase PF00885.14 gi|313126890|ref|YP_004037160.1| - 1.7e-34 118.5 1.6 1.8e-34 118.4 1.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FMN_red PF03358.10 gi|313126890|ref|YP_004037160.1| - 0.095 12.1 0.6 2.3 7.7 0.1 2.4 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Aminotran_1_2 PF00155.16 gi|313126891|ref|YP_004037161.1| - 1.5e-63 214.9 0.0 1.7e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|313126891|ref|YP_004037161.1| - 1.8e-08 33.9 0.0 5.3e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313126891|ref|YP_004037161.1| - 5.4e-07 28.2 0.0 1.2e-06 27.1 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|313126891|ref|YP_004037161.1| - 0.00039 19.2 0.0 0.00067 18.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|313126891|ref|YP_004037161.1| - 0.006 15.6 0.1 0.011 14.7 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Lipase_GDSL_2 PF13472.1 gi|313126891|ref|YP_004037161.1| - 0.024 14.7 0.8 0.11 12.6 0.1 2.3 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family MacB_PCD PF12704.2 gi|313126892|ref|YP_004037162.1| - 9.3e-32 110.4 1.0 9.3e-32 110.4 0.7 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|313126892|ref|YP_004037162.1| - 6.1e-21 74.4 9.5 6.1e-21 74.4 6.6 2.2 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|313126893|ref|YP_004037163.1| - 1.7e-35 122.3 0.0 2.2e-35 121.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126893|ref|YP_004037163.1| - 2.6e-11 44.0 0.1 1.7e-05 24.9 0.0 2.5 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313126893|ref|YP_004037163.1| - 8.9e-07 28.3 0.3 5.9e-05 22.4 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|313126893|ref|YP_004037163.1| - 9.5e-05 22.4 0.1 0.00031 20.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|313126893|ref|YP_004037163.1| - 0.00015 21.1 0.0 0.00027 20.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|313126893|ref|YP_004037163.1| - 0.00038 19.6 0.0 0.00063 18.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|313126893|ref|YP_004037163.1| - 0.0036 18.1 0.2 0.0078 17.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|313126893|ref|YP_004037163.1| - 0.0039 17.1 0.0 0.015 15.2 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|313126893|ref|YP_004037163.1| - 0.0043 16.4 0.0 0.032 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|313126893|ref|YP_004037163.1| - 0.0048 16.7 0.1 0.061 13.2 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|313126893|ref|YP_004037163.1| - 0.0054 16.8 0.6 0.046 13.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|313126893|ref|YP_004037163.1| - 0.0069 16.7 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313126893|ref|YP_004037163.1| - 0.01 15.7 0.6 0.044 13.6 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313126893|ref|YP_004037163.1| - 0.012 15.0 0.0 0.03 13.7 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|313126893|ref|YP_004037163.1| - 0.018 14.5 0.1 0.053 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|313126893|ref|YP_004037163.1| - 0.025 13.0 0.0 0.034 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_18 PF13238.1 gi|313126893|ref|YP_004037163.1| - 0.052 13.8 0.1 0.25 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|313126893|ref|YP_004037163.1| - 0.09 12.4 0.0 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase IstB_IS21 PF01695.12 gi|313126893|ref|YP_004037163.1| - 0.092 12.1 0.0 0.26 10.6 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|313126893|ref|YP_004037163.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|313126893|ref|YP_004037163.1| - 0.12 11.8 0.1 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family CARDB PF07705.6 gi|313126894|ref|YP_004037164.1| - 1.1e-10 41.4 10.4 0.0026 17.7 0.0 4.2 4 0 0 4 4 4 3 CARDB Transglut_C PF00927.17 gi|313126894|ref|YP_004037164.1| - 0.00025 21.0 0.7 1 9.4 0.0 3.3 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|313126894|ref|YP_004037164.1| - 0.021 14.8 11.8 0.022 14.7 0.5 5.3 6 1 0 6 6 6 0 NPCBM-associated, NEW3 domain of alpha-galactosidase GidB PF02527.10 gi|313126894|ref|YP_004037164.1| - 0.14 11.2 0.1 0.25 10.4 0.1 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G DEAD PF00270.24 gi|313126895|ref|YP_004037165.1| - 1.9e-23 82.7 0.0 4.2e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|313126895|ref|YP_004037165.1| - 2.2e-07 30.6 0.1 1.4e-06 28.0 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|313126895|ref|YP_004037165.1| - 0.0002 21.2 0.0 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF433 PF04255.9 gi|313126895|ref|YP_004037165.1| - 0.071 12.5 0.0 0.28 10.6 0.0 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF433) RuBisCO_large PF00016.15 gi|313126896|ref|YP_004037166.1| - 6.5e-68 228.8 0.7 5.9e-66 222.4 0.5 2.1 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|313126896|ref|YP_004037166.1| - 2.9e-22 78.6 0.0 6.4e-22 77.5 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Glyco_hydro_97 PF10566.4 gi|313126896|ref|YP_004037166.1| - 0.044 12.8 0.1 0.1 11.6 0.0 1.4 1 1 0 1 1 1 0 Glycoside hydrolase 97 DUF805 PF05656.9 gi|313126897|ref|YP_004037167.1| - 6.7 6.5 8.6 1.9 8.3 3.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF805) IF-2B PF01008.12 gi|313126898|ref|YP_004037168.1| - 5.8e-76 255.1 1.5 6.7e-76 254.9 1.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family 6PGD PF00393.14 gi|313126898|ref|YP_004037168.1| - 0.066 12.4 0.0 1.6 7.8 0.1 2.3 2 0 0 2 2 2 0 6-phosphogluconate dehydrogenase, C-terminal domain PYNP_C PF07831.8 gi|313126899|ref|YP_004037169.1| - 1.5e-11 43.5 0.0 3.1e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|313126899|ref|YP_004037169.1| - 1.2e-08 34.7 2.9 6.6e-08 32.2 2.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|313126899|ref|YP_004037169.1| - 5.8e-08 32.2 0.0 1.2e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Molydop_binding PF01568.16 gi|313126899|ref|YP_004037169.1| - 0.00026 20.7 0.0 0.00063 19.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.4 gi|313126899|ref|YP_004037169.1| - 0.038 12.4 0.0 0.074 11.5 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Biotin_lipoyl_2 PF13533.1 gi|313126899|ref|YP_004037169.1| - 0.044 13.4 0.0 0.12 12.0 0.0 1.7 2 0 0 2 2 2 0 Biotin-lipoyl like Thioredoxin PF00085.15 gi|313126900|ref|YP_004037170.1| - 4.8e-30 103.3 0.0 6.2e-30 102.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|313126900|ref|YP_004037170.1| - 5.5e-09 36.2 0.0 4.4e-08 33.3 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|313126900|ref|YP_004037170.1| - 3.8e-08 33.3 0.0 0.00017 21.6 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|313126900|ref|YP_004037170.1| - 2.7e-05 24.1 0.0 5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|313126900|ref|YP_004037170.1| - 9.8e-05 21.9 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|313126900|ref|YP_004037170.1| - 0.00026 20.6 0.2 0.00088 18.8 0.0 1.8 1 1 1 2 2 2 1 DSBA-like thioredoxin domain TraF PF13728.1 gi|313126900|ref|YP_004037170.1| - 0.00044 19.7 0.0 0.00069 19.1 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.6 gi|313126900|ref|YP_004037170.1| - 0.00067 19.5 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|313126900|ref|YP_004037170.1| - 0.00088 19.4 0.0 0.0015 18.7 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|313126900|ref|YP_004037170.1| - 0.0023 17.5 0.0 0.0068 16.0 0.0 1.7 1 1 0 1 1 1 1 AhpC/TSA family Phosducin PF02114.11 gi|313126900|ref|YP_004037170.1| - 0.016 13.9 0.0 0.024 13.3 0.0 1.3 1 1 0 1 1 1 0 Phosducin Thioredoxin_3 PF13192.1 gi|313126900|ref|YP_004037170.1| - 0.018 14.8 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain Redoxin PF08534.5 gi|313126900|ref|YP_004037170.1| - 0.072 12.6 0.1 0.17 11.4 0.1 1.6 1 1 0 1 1 1 0 Redoxin DUF3353 PF11833.3 gi|313126901|ref|YP_004037171.1| - 0.21 11.0 3.5 0.24 10.8 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF308 PF03729.8 gi|313126901|ref|YP_004037171.1| - 3.1 7.8 13.0 0.14 12.2 4.3 2.0 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) PSI_PsaJ PF01701.13 gi|313126901|ref|YP_004037171.1| - 7.3 6.4 6.5 0.43 10.3 0.4 2.1 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ HTH_20 PF12840.2 gi|313126902|ref|YP_004037172.1| - 1.5e-10 40.7 0.4 2.8e-10 39.8 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313126902|ref|YP_004037172.1| - 1.4e-06 27.7 0.1 2.6e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313126902|ref|YP_004037172.1| - 0.00068 19.2 0.1 0.0011 18.5 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313126902|ref|YP_004037172.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313126902|ref|YP_004037172.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313126902|ref|YP_004037172.1| - 0.015 15.5 0.7 0.047 14.0 0.5 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain ArsR PF09824.4 gi|313126902|ref|YP_004037172.1| - 0.025 13.9 0.0 0.025 13.8 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Sigma70_r4 PF04545.11 gi|313126902|ref|YP_004037172.1| - 0.035 13.4 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|313126902|ref|YP_004037172.1| - 0.041 13.2 0.0 0.07 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|313126902|ref|YP_004037172.1| - 0.049 13.5 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family PBP PF01161.15 gi|313126903|ref|YP_004037173.1| - 1.7e-38 131.7 0.0 2e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Oxidored_FMN PF00724.15 gi|313126904|ref|YP_004037174.1| - 3.4e-36 124.9 0.0 2.2e-30 105.7 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|313126904|ref|YP_004037174.1| - 0.003 16.4 0.0 0.0051 15.6 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|313126904|ref|YP_004037174.1| - 0.015 14.6 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein Nudix_N_2 PF14803.1 gi|313126904|ref|YP_004037174.1| - 0.024 14.3 1.7 0.024 14.3 1.2 1.8 2 0 0 2 2 2 0 Nudix N-terminal Macro PF01661.16 gi|313126905|ref|YP_004037175.1| - 4.9e-26 90.9 0.0 6.6e-26 90.5 0.0 1.2 1 0 0 1 1 1 1 Macro domain AP_endonuc_2 PF01261.19 gi|313126905|ref|YP_004037175.1| - 0.032 13.5 0.0 0.049 12.9 0.0 1.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_S9 PF00326.16 gi|313126906|ref|YP_004037176.1| - 4.2e-49 166.6 0.0 6.2e-49 166.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|313126906|ref|YP_004037176.1| - 8.7e-12 44.4 6.5 0.00049 19.7 0.0 5.7 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|313126906|ref|YP_004037176.1| - 3.4e-07 30.1 0.1 9.6e-07 28.6 0.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|313126906|ref|YP_004037176.1| - 1.5e-05 24.5 0.0 0.14 11.5 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|313126906|ref|YP_004037176.1| - 3.4e-05 23.8 2.2 3.4e-05 23.8 1.5 3.1 3 1 0 3 3 3 1 Alpha/beta hydrolase family DPPIV_N PF00930.16 gi|313126906|ref|YP_004037176.1| - 0.00011 20.9 0.0 0.77 8.2 0.0 3.7 2 2 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.13 gi|313126906|ref|YP_004037176.1| - 0.0078 15.5 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family DUF3625 PF12293.3 gi|313126906|ref|YP_004037176.1| - 0.017 14.2 0.0 0.032 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3625) FSH1 PF03959.8 gi|313126906|ref|YP_004037176.1| - 0.05 13.0 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) WD40 PF00400.27 gi|313126906|ref|YP_004037176.1| - 0.79 9.7 2.8 4.2 7.4 0.0 3.4 4 0 0 4 4 4 0 WD domain, G-beta repeat Inositol_P PF00459.20 gi|313126907|ref|YP_004037177.1| - 7.4e-36 123.8 0.4 8.4e-36 123.6 0.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase_glpX PF03320.8 gi|313126907|ref|YP_004037177.1| - 0.079 11.5 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DUF4157 PF13699.1 gi|313126911|ref|YP_004037181.1| - 1.4e-30 105.2 1.2 4.6e-30 103.5 0.9 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) TipAS PF07739.8 gi|313126911|ref|YP_004037181.1| - 0.0011 19.2 0.5 0.099 12.9 0.0 3.1 3 0 0 3 3 3 1 TipAS antibiotic-recognition domain ACT_6 PF13740.1 gi|313126911|ref|YP_004037181.1| - 0.0086 15.7 0.0 0.025 14.2 0.0 1.8 1 0 0 1 1 1 1 ACT domain Flagellin_IN PF07196.8 gi|313126911|ref|YP_004037181.1| - 0.031 14.2 1.8 0.033 14.1 0.1 1.9 2 0 0 2 2 2 0 Flagellin hook IN motif Peptidase_MA_2 PF13485.1 gi|313126911|ref|YP_004037181.1| - 0.05 13.6 0.7 4.2 7.4 0.1 3.1 3 0 0 3 3 3 0 Peptidase MA superfamily Peptidase_M91 PF14891.1 gi|313126911|ref|YP_004037181.1| - 0.2 11.7 3.1 0.29 11.1 0.3 2.5 1 1 1 2 2 2 0 Effector protein DUF2071 PF09844.4 gi|313126912|ref|YP_004037182.1| - 1.9e-65 220.2 0.2 3.1e-37 128.1 0.0 2.0 2 0 0 2 2 2 2 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|313126912|ref|YP_004037182.1| - 0.0024 17.2 0.0 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) CopD PF05425.8 gi|313126913|ref|YP_004037183.1| - 1.6e-07 31.4 4.8 1.6e-07 31.4 3.4 2.0 1 1 1 2 2 2 1 Copper resistance protein D DUF2770 PF10968.3 gi|313126913|ref|YP_004037183.1| - 0.0084 15.7 1.9 0.02 14.5 1.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2770) COX15-CtaA PF02628.10 gi|313126913|ref|YP_004037183.1| - 0.073 11.9 6.5 0.26 10.1 0.4 2.0 1 1 1 2 2 2 0 Cytochrome oxidase assembly protein Metallophos PF00149.23 gi|313126915|ref|YP_004037185.1| - 3.2e-12 46.2 3.9 1.5e-11 44.1 2.7 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|313126915|ref|YP_004037185.1| - 3.2e-12 46.5 0.1 5.4e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1778 PF08681.6 gi|313126916|ref|YP_004037186.1| - 0.12 12.1 6.7 5 7.0 0.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1778) DUF4078 PF13300.1 gi|313126916|ref|YP_004037186.1| - 8 6.6 7.7 0.92 9.6 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4078) bPH_2 PF03703.9 gi|313126917|ref|YP_004037187.1| - 4.1e-19 68.3 0.1 5.5e-19 67.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain NfeD PF01957.13 gi|313126917|ref|YP_004037187.1| - 0.078 13.1 3.7 0.19 11.8 2.6 1.7 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Na_H_antiport_1 PF06965.7 gi|313126917|ref|YP_004037187.1| - 0.11 11.3 0.5 0.14 10.9 0.3 1.1 1 0 0 1 1 1 0 Na+/H+ antiporter 1 DUF1469 PF07332.6 gi|313126917|ref|YP_004037187.1| - 0.24 11.1 6.5 0.15 11.7 3.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) bPH_2 PF03703.9 gi|313126918|ref|YP_004037188.1| - 3.8e-46 154.9 2.8 7.8e-20 70.6 0.2 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|313126918|ref|YP_004037188.1| - 0.15 11.9 0.0 0.9 9.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial PH domain Rnk_N PF14760.1 gi|313126918|ref|YP_004037188.1| - 6.7 6.8 7.1 40 4.3 0.1 3.7 4 0 0 4 4 4 0 Rnk N-terminus DUF2244 PF10003.4 gi|313126918|ref|YP_004037188.1| - 9.6 5.5 13.2 26 4.1 1.6 3.4 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) Glyoxalase_2 PF12681.2 gi|313126919|ref|YP_004037189.1| - 3.6e-08 33.9 0.6 4.3e-08 33.7 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313126919|ref|YP_004037189.1| - 0.0025 17.7 1.7 0.046 13.6 1.2 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.1 gi|313126919|ref|YP_004037189.1| - 0.13 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 CppA N-terminal Pro_CA PF00484.14 gi|313126920|ref|YP_004037190.1| - 4.6e-27 94.8 0.2 6.3e-27 94.4 0.1 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Aldolase PF01081.14 gi|313126921|ref|YP_004037191.1| - 2.7e-44 150.7 2.3 3.3e-44 150.4 1.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|313126921|ref|YP_004037191.1| - 0.00076 18.5 6.7 1.2 8.0 1.0 3.0 1 1 2 3 3 3 3 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|313126921|ref|YP_004037191.1| - 0.0027 16.8 1.9 0.082 12.0 1.3 3.0 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|313126921|ref|YP_004037191.1| - 0.015 14.5 5.3 0.72 9.0 0.0 3.1 2 1 2 4 4 4 0 PcrB family QRPTase_C PF01729.14 gi|313126921|ref|YP_004037191.1| - 0.066 12.7 0.0 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Ferritin_2 PF13668.1 gi|313126921|ref|YP_004037191.1| - 0.068 13.1 0.1 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Ferritin-like domain NMO PF03060.10 gi|313126921|ref|YP_004037191.1| - 1.5 7.9 6.9 2.7 7.0 0.0 2.7 2 1 1 3 3 3 0 Nitronate monooxygenase ABC2_membrane PF01061.19 gi|313126922|ref|YP_004037192.1| - 8.5e-25 87.1 11.5 8.5e-25 87.1 8.0 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|313126922|ref|YP_004037192.1| - 4e-18 65.5 3.0 4e-18 65.5 2.1 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313126922|ref|YP_004037192.1| - 1.1e-10 40.9 16.0 4.7e-10 38.7 11.1 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313126922|ref|YP_004037192.1| - 2.6e-10 39.8 8.4 3.3e-10 39.5 5.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|313126922|ref|YP_004037192.1| - 0.0011 17.7 2.8 0.0016 17.3 1.9 1.2 1 0 0 1 1 1 1 Predicted permease (DUF2074) ABC2_membrane_5 PF13346.1 gi|313126922|ref|YP_004037192.1| - 0.066 12.4 10.7 0.025 13.8 3.9 2.4 2 1 0 2 2 2 0 ABC-2 family transporter protein DUF2069 PF09842.4 gi|313126922|ref|YP_004037192.1| - 3.1 7.7 10.9 2.1 8.3 3.6 3.1 2 2 1 3 3 3 0 Predicted membrane protein (DUF2069) DUF1616 PF07760.6 gi|313126922|ref|YP_004037192.1| - 7.2 5.6 8.9 16 4.5 6.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1616) ABC_tran PF00005.22 gi|313126923|ref|YP_004037193.1| - 1e-28 100.3 0.0 1.6e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313126923|ref|YP_004037193.1| - 2.5e-18 67.0 0.0 5.5e-12 46.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313126923|ref|YP_004037193.1| - 0.0003 20.8 0.1 0.00056 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|313126923|ref|YP_004037193.1| - 0.00091 18.8 0.3 0.0029 17.2 0.1 1.9 1 1 1 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|313126923|ref|YP_004037193.1| - 0.0015 18.1 0.3 0.0029 17.2 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|313126923|ref|YP_004037193.1| - 0.0017 17.8 0.4 0.0035 16.8 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313126923|ref|YP_004037193.1| - 0.0018 18.6 0.1 0.0026 18.1 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313126923|ref|YP_004037193.1| - 0.0066 16.6 0.0 0.022 14.9 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|313126923|ref|YP_004037193.1| - 0.011 14.8 0.0 1.1 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|313126923|ref|YP_004037193.1| - 0.015 15.2 0.8 0.046 13.6 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|313126923|ref|YP_004037193.1| - 0.022 14.6 0.2 0.04 13.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313126923|ref|YP_004037193.1| - 0.028 14.3 0.0 0.11 12.4 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.12 gi|313126923|ref|YP_004037193.1| - 0.033 13.6 0.1 1.6 8.1 0.2 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ArgK PF03308.11 gi|313126923|ref|YP_004037193.1| - 0.042 12.6 0.5 0.065 11.9 0.4 1.2 1 0 0 1 1 1 0 ArgK protein SMC_N PF02463.14 gi|313126923|ref|YP_004037193.1| - 0.055 12.6 0.0 0.49 9.5 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|313126923|ref|YP_004037193.1| - 0.062 14.1 0.3 0.14 13.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|313126923|ref|YP_004037193.1| - 0.075 12.9 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|313126923|ref|YP_004037193.1| - 0.087 12.2 0.1 0.7 9.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|313126923|ref|YP_004037193.1| - 0.096 11.8 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|313126923|ref|YP_004037193.1| - 0.11 11.6 0.0 0.22 10.6 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|313126923|ref|YP_004037193.1| - 0.11 12.6 0.1 0.19 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|313126923|ref|YP_004037193.1| - 0.13 11.7 0.3 0.21 11.0 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|313126923|ref|YP_004037193.1| - 0.19 12.2 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|313126923|ref|YP_004037193.1| - 0.21 11.0 0.0 0.35 10.3 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|313126923|ref|YP_004037193.1| - 0.22 11.0 0.2 0.33 10.4 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein GSDH PF07995.6 gi|313126924|ref|YP_004037194.1| - 6.6e-31 107.6 0.2 2.1e-19 69.7 0.0 2.2 2 0 0 2 2 2 2 Glucose / Sorbosone dehydrogenase PQQ_3 PF13570.1 gi|313126924|ref|YP_004037194.1| - 0.49 10.7 7.6 2.3 8.5 0.0 3.5 4 0 0 4 4 4 0 PQQ-like domain Aldo_ket_red PF00248.16 gi|313126925|ref|YP_004037195.1| - 4.9e-70 235.5 0.0 6e-70 235.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF457 PF04307.9 gi|313126926|ref|YP_004037196.1| - 0.00033 20.0 5.8 0.00042 19.6 4.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3307 PF11750.3 gi|313126926|ref|YP_004037196.1| - 0.025 14.3 1.3 0.19 11.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3307) Rdx PF10262.4 gi|313126927|ref|YP_004037197.1| - 3.9e-16 58.8 0.0 4.5e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Rdx family UbiA PF01040.13 gi|313126929|ref|YP_004037199.1| - 5e-29 101.2 24.9 5e-29 101.2 17.3 2.8 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|313126929|ref|YP_004037199.1| - 5.6e-19 68.1 14.4 5.6e-19 68.1 10.0 3.2 2 1 1 3 3 3 2 Cytochrome oxidase assembly protein DUF2663 PF10864.3 gi|313126929|ref|YP_004037199.1| - 5.3 7.2 6.7 0.69 10.1 0.9 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2663) COX2 PF00116.15 gi|313126930|ref|YP_004037200.1| - 4.6e-24 84.5 3.2 1.2e-22 79.9 2.2 2.2 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|313126930|ref|YP_004037200.1| - 1.9e-09 37.3 0.3 3.3e-09 36.5 0.2 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Claudin_3 PF06653.6 gi|313126930|ref|YP_004037200.1| - 0.0096 15.6 0.0 0.019 14.6 0.0 1.5 2 0 0 2 2 2 1 Tight junction protein, Claudin-like PTPLA PF04387.9 gi|313126930|ref|YP_004037200.1| - 0.053 12.9 0.1 0.091 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein tyrosine phosphatase-like protein, PTPLA Cupredoxin_1 PF13473.1 gi|313126930|ref|YP_004037200.1| - 0.082 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain TrbC PF04956.8 gi|313126930|ref|YP_004037200.1| - 0.31 11.0 2.3 0.62 10.1 0.7 1.9 2 0 0 2 2 2 0 TrbC/VIRB2 family BPL_LplA_LipB PF03099.14 gi|313126931|ref|YP_004037201.1| - 4.9e-12 45.9 0.0 7.9e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|313126931|ref|YP_004037201.1| - 3.8e-07 29.6 0.3 7.3e-07 28.7 0.2 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain CTP_transf_2 PF01467.21 gi|313126932|ref|YP_004037202.1| - 2.1e-12 47.3 0.8 6.9e-12 45.6 0.5 1.8 1 1 0 1 1 1 1 Cytidylyltransferase Urm1 PF09138.6 gi|313126932|ref|YP_004037202.1| - 0.037 14.1 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) FAD_syn PF06574.7 gi|313126932|ref|YP_004037202.1| - 0.17 11.4 1.8 0.21 11.1 0.2 2.0 1 1 2 3 3 3 0 FAD synthetase Prok-JAB PF14464.1 gi|313126933|ref|YP_004037203.1| - 1.1e-14 53.9 0.0 1.4e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|313126933|ref|YP_004037203.1| - 1.4e-05 24.8 0.0 2.9e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|313126933|ref|YP_004037203.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|313126933|ref|YP_004037203.1| - 0.098 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 Fructosamin_kin PF03881.9 gi|313126934|ref|YP_004037204.1| - 9.7e-38 129.7 0.0 1.3e-37 129.4 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.18 gi|313126934|ref|YP_004037204.1| - 8.8e-20 71.4 3.3 1.1e-19 71.0 2.3 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.9 gi|313126934|ref|YP_004037204.1| - 3.2e-05 23.2 0.4 9.9e-05 21.6 0.2 1.7 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase RIO1 PF01163.17 gi|313126934|ref|YP_004037204.1| - 0.0015 17.9 0.0 0.008 15.5 0.0 1.9 2 0 0 2 2 2 1 RIO1 family DHH PF01368.15 gi|313126935|ref|YP_004037205.1| - 3.1e-10 39.8 0.0 5e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|313126935|ref|YP_004037205.1| - 4.5e-08 32.8 0.0 8.3e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|313126935|ref|YP_004037205.1| - 1.2e-07 31.7 0.8 3.4e-07 30.2 0.6 1.7 1 0 0 1 1 1 1 S1 RNA binding domain PLDc_2 PF13091.1 gi|313126936|ref|YP_004037206.1| - 1.4e-35 121.7 0.0 5.3e-20 71.4 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|313126936|ref|YP_004037206.1| - 1.6e-06 27.6 2.9 0.00083 19.0 0.3 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|313126936|ref|YP_004037206.1| - 0.00068 18.6 0.0 1 8.2 0.0 2.4 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB DUF1669 PF07894.7 gi|313126936|ref|YP_004037206.1| - 0.00081 18.6 0.0 0.01 15.0 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1669) DUF218 PF02698.12 gi|313126936|ref|YP_004037206.1| - 0.0027 17.2 0.4 0.97 8.9 0.1 2.7 2 0 0 2 2 2 2 DUF218 domain DUF1518 PF07469.7 gi|313126936|ref|YP_004037206.1| - 0.045 13.9 0.4 0.14 12.2 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1518) PP_kinase_C PF13090.1 gi|313126936|ref|YP_004037206.1| - 0.17 10.4 0.0 6.4 5.2 0.0 2.1 2 0 0 2 2 2 0 Polyphosphate kinase C-terminal domain HEAT_2 PF13646.1 gi|313126937|ref|YP_004037207.1| - 2.9e-21 75.5 10.7 1.8e-12 47.3 1.5 4.1 2 1 2 4 4 4 2 HEAT repeats HEAT_PBS PF03130.11 gi|313126937|ref|YP_004037207.1| - 2.9e-12 45.8 19.1 0.00084 19.5 0.9 6.4 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|313126937|ref|YP_004037207.1| - 8.5e-06 25.4 0.2 0.0056 16.6 0.1 4.1 4 0 0 4 4 4 1 HEAT repeat HEAT_EZ PF13513.1 gi|313126937|ref|YP_004037207.1| - 3.6e-05 24.0 10.8 0.00011 22.5 2.3 3.4 3 1 0 3 3 3 1 HEAT-like repeat Arm PF00514.18 gi|313126937|ref|YP_004037207.1| - 0.002 17.9 0.0 0.034 13.9 0.0 2.4 2 0 0 2 2 2 1 Armadillo/beta-catenin-like repeat DNA_alkylation PF08713.6 gi|313126937|ref|YP_004037207.1| - 0.0038 16.7 0.8 0.0085 15.6 0.2 2.0 1 1 1 2 2 2 1 DNA alkylation repair enzyme G-gamma PF00631.17 gi|313126937|ref|YP_004037207.1| - 0.055 13.2 0.1 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 GGL domain cwf21 PF08312.7 gi|313126937|ref|YP_004037207.1| - 0.16 11.8 3.1 0.53 10.1 0.0 3.1 2 1 0 2 2 2 0 cwf21 domain CN_hydrolase PF00795.17 gi|313126938|ref|YP_004037208.1| - 4.2e-19 68.6 0.0 5.5e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Peripla_BP_2 PF01497.13 gi|313126939|ref|YP_004037209.1| - 1.5e-38 132.3 0.0 2.2e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PQQ_3 PF13570.1 gi|313126939|ref|YP_004037209.1| - 0.54 10.5 3.6 0.47 10.8 0.2 2.6 4 0 0 4 4 4 0 PQQ-like domain Ferritin PF00210.19 gi|313126940|ref|YP_004037210.1| - 1.2e-26 93.2 4.6 1.4e-26 92.9 3.2 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|313126940|ref|YP_004037210.1| - 0.0026 17.9 0.5 0.01 16.0 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF2383) Fe_dep_repr_C PF02742.10 gi|313126940|ref|YP_004037210.1| - 0.079 12.6 3.2 0.096 12.3 0.2 2.4 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain Oxidored_FMN PF00724.15 gi|313126942|ref|YP_004037212.1| - 1e-70 238.4 0.0 1.1e-70 238.2 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|313126942|ref|YP_004037212.1| - 0.047 12.5 0.0 0.078 11.7 0.0 1.5 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) DUF35 PF01796.12 gi|313126944|ref|YP_004037214.1| - 1.2e-08 35.0 0.8 1.7e-08 34.5 0.5 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|313126945|ref|YP_004037215.1| - 3.7e-09 36.0 0.1 2.1e-08 33.5 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|313126945|ref|YP_004037215.1| - 0.00019 21.2 0.5 0.41 10.5 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.18 gi|313126945|ref|YP_004037215.1| - 0.00028 19.9 0.0 0.00073 18.5 0.0 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain Acyl_transf_3 PF01757.17 gi|313126946|ref|YP_004037216.1| - 0.06 12.1 11.8 0.074 11.8 8.1 1.0 1 0 0 1 1 1 0 Acyltransferase family Pox_A14 PF05767.7 gi|313126946|ref|YP_004037216.1| - 2.1 8.3 4.7 11 6.0 0.3 2.3 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 MFS_1 PF07690.11 gi|313126947|ref|YP_004037217.1| - 6.5e-36 123.7 36.9 6e-26 90.9 9.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|313126947|ref|YP_004037217.1| - 1.8e-08 33.2 26.4 8e-05 21.2 10.2 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|313126947|ref|YP_004037217.1| - 1.2e-06 26.9 18.2 0.00014 20.1 5.7 2.1 1 1 0 2 2 2 2 Transmembrane secretion effector TrbE PF11100.3 gi|313126947|ref|YP_004037217.1| - 0.045 13.6 1.9 0.42 10.5 0.5 2.6 2 0 0 2 2 2 0 Conjugal transfer protein TrbE Pyr_redox_2 PF07992.9 gi|313126948|ref|YP_004037218.1| - 2.7e-22 79.6 0.0 3.3e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313126948|ref|YP_004037218.1| - 1.3e-08 35.1 0.1 0.0007 19.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313126948|ref|YP_004037218.1| - 4.8e-08 32.2 3.4 4.1e-06 25.9 1.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|313126948|ref|YP_004037218.1| - 5.2e-08 33.1 0.1 0.0019 18.5 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313126948|ref|YP_004037218.1| - 1.8e-07 30.4 4.6 3e-05 23.0 1.0 3.0 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|313126948|ref|YP_004037218.1| - 4.7e-05 22.0 0.5 0.00038 19.0 0.4 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|313126948|ref|YP_004037218.1| - 5.1e-05 22.3 0.3 9.2e-05 21.4 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313126948|ref|YP_004037218.1| - 0.00012 21.3 0.8 0.00012 21.3 0.6 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|313126948|ref|YP_004037218.1| - 0.00023 20.3 0.3 0.0035 16.4 0.1 2.2 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.1 gi|313126948|ref|YP_004037218.1| - 0.00036 19.5 0.0 0.0072 15.2 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|313126948|ref|YP_004037218.1| - 0.00047 19.3 0.7 0.00093 18.3 0.5 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313126948|ref|YP_004037218.1| - 0.0021 18.0 0.3 0.0062 16.5 0.2 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|313126948|ref|YP_004037218.1| - 0.04 13.6 1.5 2 8.1 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|313126948|ref|YP_004037218.1| - 0.043 13.3 0.2 0.079 12.5 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|313126948|ref|YP_004037218.1| - 0.06 12.2 0.1 0.081 11.8 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein HCBP_related PF06594.6 gi|313126948|ref|YP_004037218.1| - 0.069 12.7 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain 3HCDH_N PF02737.13 gi|313126948|ref|YP_004037218.1| - 0.15 11.7 0.4 0.35 10.5 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_11 PF08241.7 gi|313126949|ref|YP_004037219.1| - 9.1e-21 74.1 0.1 1.5e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313126949|ref|YP_004037219.1| - 9.7e-14 51.5 0.0 1.7e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313126949|ref|YP_004037219.1| - 8e-12 45.7 0.1 1.4e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313126949|ref|YP_004037219.1| - 2.3e-11 43.5 0.0 2.8e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313126949|ref|YP_004037219.1| - 6e-11 42.7 0.0 1.1e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313126949|ref|YP_004037219.1| - 2.1e-10 40.5 0.0 2.7e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313126949|ref|YP_004037219.1| - 5.6e-09 35.4 0.0 8.1e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|313126949|ref|YP_004037219.1| - 1.3e-07 31.6 0.8 2.9e-07 30.5 0.6 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313126949|ref|YP_004037219.1| - 9.2e-05 21.8 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|313126949|ref|YP_004037219.1| - 0.0018 17.9 0.0 0.01 15.4 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.9 gi|313126949|ref|YP_004037219.1| - 0.0023 17.1 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB DREV PF05219.7 gi|313126949|ref|YP_004037219.1| - 0.0028 16.5 0.0 0.0037 16.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_17 PF12692.2 gi|313126949|ref|YP_004037219.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.5 1 1 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase PCMT PF01135.14 gi|313126949|ref|YP_004037219.1| - 0.015 14.8 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|313126949|ref|YP_004037219.1| - 0.027 13.8 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|313126949|ref|YP_004037219.1| - 0.03 13.9 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|313126949|ref|YP_004037219.1| - 0.081 11.9 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase T2SF PF00482.18 gi|313126950|ref|YP_004037220.1| - 4.3e-35 120.3 4.9 9e-21 74.0 1.0 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F CMV_US PF08001.6 gi|313126950|ref|YP_004037220.1| - 0.012 14.6 0.2 0.023 13.7 0.1 1.4 1 0 0 1 1 1 0 CMV US DUF3366 PF11846.3 gi|313126950|ref|YP_004037220.1| - 0.02 14.7 0.2 0.02 14.7 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3366) NDUF_B12 PF08122.7 gi|313126950|ref|YP_004037220.1| - 0.29 10.8 1.2 26 4.6 0.1 3.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family T2SE PF00437.15 gi|313126951|ref|YP_004037221.1| - 6.5e-46 156.4 0.0 1e-45 155.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|313126951|ref|YP_004037221.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain COX15-CtaA PF02628.10 gi|313126952|ref|YP_004037222.1| - 0.89 8.3 11.6 4.3 6.0 8.1 1.8 1 1 0 1 1 1 0 Cytochrome oxidase assembly protein DUF1214 PF06742.6 gi|313126953|ref|YP_004037223.1| - 0.022 15.2 0.1 0.035 14.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1214) UDG PF03167.14 gi|313126954|ref|YP_004037224.1| - 6.5e-11 41.9 0.0 7.7e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Collagen_bind_2 PF12904.2 gi|313126954|ref|YP_004037224.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative collagen-binding domain of a collagenase DUF4098 PF13345.1 gi|313126955|ref|YP_004037225.1| - 2.3e-10 40.2 28.4 3.5e-05 23.6 4.1 4.7 2 1 3 5 5 5 5 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|313126955|ref|YP_004037225.1| - 3e-05 23.6 0.4 0.0002 20.9 0.0 2.3 2 1 0 3 3 3 1 Domain of unknown function (DUF4097) Lactamase_B PF00753.22 gi|313126956|ref|YP_004037226.1| - 9.7e-25 87.3 2.8 1.1e-24 87.1 1.9 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313126956|ref|YP_004037226.1| - 0.00023 20.7 0.1 0.00029 20.4 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DnaJ PF00226.26 gi|313126957|ref|YP_004037227.1| - 4.5e-22 77.5 0.9 6.6e-22 77.0 0.6 1.3 1 0 0 1 1 1 1 DnaJ domain Ndc1_Nup PF09531.5 gi|313126957|ref|YP_004037227.1| - 5.6 5.2 5.8 8.8 4.6 4.0 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Macoilin PF09726.4 gi|313126957|ref|YP_004037227.1| - 6.1 4.9 21.0 8.9 4.4 14.6 1.3 1 0 0 1 1 1 0 Transmembrane protein DNA_pol_viral_N PF00242.12 gi|313126957|ref|YP_004037227.1| - 7.6 5.4 18.9 12 4.8 13.1 1.4 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain DUF3040 PF11239.3 gi|313126958|ref|YP_004037228.1| - 0.0065 16.4 1.6 2.5 8.2 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3040) OpgC_C PF10129.4 gi|313126958|ref|YP_004037228.1| - 0.065 11.9 1.3 0.064 11.9 0.3 1.4 1 1 0 1 1 1 0 OpgC protein DUF2892 PF11127.3 gi|313126958|ref|YP_004037228.1| - 1.3 8.8 9.4 0.11 12.2 2.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) FA_desaturase PF00487.19 gi|313126958|ref|YP_004037228.1| - 8.5 5.7 6.6 8.8 5.6 1.9 2.0 1 1 1 2 2 2 0 Fatty acid desaturase Lactamase_B PF00753.22 gi|313126959|ref|YP_004037229.1| - 1.1e-21 77.3 7.1 2.1e-21 76.4 5.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313126959|ref|YP_004037229.1| - 0.00047 19.7 0.1 0.00047 19.7 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RNA_pol_L_2 PF13656.1 gi|313126960|ref|YP_004037230.1| - 3.1e-17 61.7 0.0 3.6e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|313126960|ref|YP_004037230.1| - 1.1e-08 34.0 0.0 1.3e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1684 PF07920.6 gi|313126961|ref|YP_004037231.1| - 5.3e-53 178.7 0.0 6.8e-53 178.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) His_biosynth PF00977.16 gi|313126962|ref|YP_004037232.1| - 6.7e-81 270.9 0.1 7.6e-81 270.7 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|313126962|ref|YP_004037232.1| - 9.9e-10 37.7 0.0 1.8e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|313126962|ref|YP_004037232.1| - 1.2e-07 31.1 0.1 0.00011 21.4 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|313126962|ref|YP_004037232.1| - 4.4e-06 26.0 0.2 0.00042 19.5 0.0 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase PcrB PF01884.12 gi|313126962|ref|YP_004037232.1| - 2.9e-05 23.4 0.0 5.7e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 PcrB family DHO_dh PF01180.16 gi|313126962|ref|YP_004037232.1| - 0.00038 19.5 0.0 0.0038 16.2 0.0 2.0 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|313126962|ref|YP_004037232.1| - 0.0068 15.3 0.2 0.014 14.2 0.0 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|313126962|ref|YP_004037232.1| - 0.031 13.3 0.0 0.056 12.4 0.0 1.3 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|313126962|ref|YP_004037232.1| - 0.035 13.2 0.1 0.31 10.1 0.0 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Glu_synthase PF01645.12 gi|313126962|ref|YP_004037232.1| - 0.048 12.5 0.0 0.077 11.9 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|313126962|ref|YP_004037232.1| - 0.084 11.6 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|313126962|ref|YP_004037232.1| - 0.12 11.4 0.0 0.7 8.8 0.0 2.2 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase ADH_zinc_N PF00107.21 gi|313126964|ref|YP_004037234.1| - 8.1e-32 109.5 0.2 2.4e-31 107.9 0.0 1.9 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|313126964|ref|YP_004037234.1| - 1.4e-19 71.1 1.3 3e-19 70.1 0.2 2.0 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313126964|ref|YP_004037234.1| - 8.7e-13 47.9 0.1 2.6e-12 46.4 0.0 1.8 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AIRS PF00586.19 gi|313126965|ref|YP_004037235.1| - 5.3e-43 145.1 9.2 2.8e-25 88.3 0.1 3.3 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|313126965|ref|YP_004037235.1| - 8.5e-34 116.7 13.9 2.1e-27 96.0 1.6 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain CBS PF00571.23 gi|313126966|ref|YP_004037236.1| - 9.1e-27 92.5 2.3 7.8e-14 51.1 0.1 2.1 2 0 0 2 2 2 2 CBS domain PHP_C PF13263.1 gi|313126967|ref|YP_004037237.1| - 5.7e-21 73.7 0.2 7.5e-20 70.1 0.1 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|313126967|ref|YP_004037237.1| - 7e-16 58.5 0.1 1.3e-15 57.6 0.1 1.5 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.16 gi|313126968|ref|YP_004037238.1| - 6.5e-38 130.6 0.3 1.1e-37 129.9 0.2 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|313126968|ref|YP_004037238.1| - 0.011 14.6 0.1 0.017 14.0 0.1 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|313126968|ref|YP_004037238.1| - 0.16 10.5 0.1 0.24 9.9 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase NUDIX PF00293.23 gi|313126969|ref|YP_004037239.1| - 1.7e-13 50.3 0.1 2.2e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.14 gi|313126970|ref|YP_004037240.1| - 1e-41 140.5 0.1 1e-19 70.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313126970|ref|YP_004037240.1| - 2.6e-19 68.2 2.7 1.6e-18 65.7 2.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|313126970|ref|YP_004037240.1| - 0.00061 19.0 1.4 0.012 14.8 0.0 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_C PF02984.14 gi|313126970|ref|YP_004037240.1| - 0.012 15.5 0.0 2.2 8.2 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain Lar_restr_allev PF14354.1 gi|313126970|ref|YP_004037240.1| - 0.012 15.9 1.1 0.012 15.9 0.8 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.2 gi|313126970|ref|YP_004037240.1| - 0.02 14.7 0.6 0.038 13.7 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313126970|ref|YP_004037240.1| - 0.022 13.9 0.7 0.037 13.2 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HTH_24 PF13412.1 gi|313126970|ref|YP_004037240.1| - 0.036 13.4 0.1 0.075 12.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding OrfB_Zn_ribbon PF07282.6 gi|313126970|ref|YP_004037240.1| - 0.038 13.6 0.7 0.089 12.4 0.5 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_N PF00134.18 gi|313126970|ref|YP_004037240.1| - 0.078 12.5 0.0 0.68 9.5 0.0 2.1 2 0 0 2 2 2 0 Cyclin, N-terminal domain RRN7 PF11781.3 gi|313126970|ref|YP_004037240.1| - 0.16 11.5 0.6 0.26 10.8 0.4 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|313126970|ref|YP_004037240.1| - 0.67 9.4 2.6 5.1 6.6 1.8 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|313126970|ref|YP_004037240.1| - 0.82 9.6 4.7 1.2 9.1 0.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Glu-tRNAGln PF02686.10 gi|313126971|ref|YP_004037241.1| - 4.6e-20 71.1 1.9 7.4e-20 70.5 1.3 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|313126972|ref|YP_004037242.1| - 9.2e-139 463.0 2.2 1.1e-138 462.7 1.6 1.0 1 0 0 1 1 1 1 Amidase Gloverin PF10793.4 gi|313126973|ref|YP_004037243.1| - 0.11 12.1 0.1 0.21 11.2 0.0 1.5 2 0 0 2 2 2 0 Gloverin-like protein TrkA_N PF02254.13 gi|313126974|ref|YP_004037244.1| - 7.3e-28 96.8 1.1 1.4e-27 96.0 0.8 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|313126974|ref|YP_004037244.1| - 1e-18 66.6 0.5 4.7e-17 61.3 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|313126974|ref|YP_004037244.1| - 3.3e-06 27.4 0.2 6.7e-06 26.4 0.1 1.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|313126974|ref|YP_004037244.1| - 1.7e-05 24.0 0.3 9.2e-05 21.5 0.1 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|313126974|ref|YP_004037244.1| - 4.6e-05 23.6 0.2 0.00015 21.9 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|313126974|ref|YP_004037244.1| - 7e-05 22.9 0.1 0.00012 22.1 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|313126974|ref|YP_004037244.1| - 0.00011 22.4 0.0 0.00016 21.9 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|313126974|ref|YP_004037244.1| - 0.00014 21.5 0.1 0.00021 20.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313126974|ref|YP_004037244.1| - 0.00032 20.7 0.2 0.00048 20.1 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|313126974|ref|YP_004037244.1| - 0.00083 19.7 0.5 0.0086 16.4 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|313126974|ref|YP_004037244.1| - 0.0014 18.4 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.8 gi|313126974|ref|YP_004037244.1| - 0.0018 17.5 0.1 0.003 16.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family ADH_zinc_N PF00107.21 gi|313126974|ref|YP_004037244.1| - 0.0021 17.5 0.0 0.16 11.5 0.1 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|313126974|ref|YP_004037244.1| - 0.0033 16.8 0.2 0.087 12.1 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|313126974|ref|YP_004037244.1| - 0.0038 16.6 0.0 0.0056 16.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Peripla_BP_3 PF13377.1 gi|313126974|ref|YP_004037244.1| - 0.0054 16.7 0.0 0.0083 16.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain GFO_IDH_MocA PF01408.17 gi|313126974|ref|YP_004037244.1| - 0.0066 16.9 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.16 gi|313126974|ref|YP_004037244.1| - 0.0094 15.5 0.1 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|313126974|ref|YP_004037244.1| - 0.014 15.1 0.1 0.027 14.2 0.1 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|313126974|ref|YP_004037244.1| - 0.017 14.2 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.5 gi|313126974|ref|YP_004037244.1| - 0.04 13.5 0.1 0.056 13.1 0.0 1.2 1 0 0 1 1 1 0 KR domain Thi4 PF01946.12 gi|313126974|ref|YP_004037244.1| - 0.046 12.8 0.0 0.071 12.1 0.0 1.3 1 0 0 1 1 1 0 Thi4 family BK_channel_a PF03493.13 gi|313126974|ref|YP_004037244.1| - 0.078 12.9 0.0 0.54 10.2 0.0 2.0 1 1 0 1 1 1 0 Calcium-activated BK potassium channel alpha subunit TrkH PF02386.11 gi|313126975|ref|YP_004037245.1| - 1e-71 241.4 11.6 1e-71 241.4 8.1 2.0 2 0 0 2 2 2 2 Cation transport protein adh_short PF00106.20 gi|313126976|ref|YP_004037246.1| - 7.5e-42 143.0 1.5 9.6e-42 142.7 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313126976|ref|YP_004037246.1| - 3.2e-29 102.3 0.0 3.7e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313126976|ref|YP_004037246.1| - 6.7e-23 81.2 0.5 9.1e-23 80.8 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313126976|ref|YP_004037246.1| - 0.004 16.6 0.1 0.0076 15.7 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|313126976|ref|YP_004037246.1| - 0.026 14.1 0.7 0.11 12.0 0.2 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2099 PF09872.4 gi|313126976|ref|YP_004037246.1| - 0.041 12.9 0.3 0.069 12.1 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) THF_DHG_CYH_C PF02882.14 gi|313126976|ref|YP_004037246.1| - 0.061 12.4 0.3 0.46 9.5 0.0 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|313126976|ref|YP_004037246.1| - 0.077 12.6 2.1 0.22 11.1 1.4 1.8 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_binding_10 PF13460.1 gi|313126976|ref|YP_004037246.1| - 0.082 12.9 1.4 0.15 12.0 0.9 1.6 1 1 0 1 1 1 0 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|313126976|ref|YP_004037246.1| - 0.089 12.5 0.1 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Ribosomal_L12 PF00542.14 gi|313126976|ref|YP_004037246.1| - 0.2 11.7 1.3 11 6.1 0.2 2.5 2 0 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain TrkH PF02386.11 gi|313126977|ref|YP_004037247.1| - 4.5e-56 189.9 19.1 3.4e-55 187.0 8.7 2.1 2 0 0 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|313126978|ref|YP_004037248.1| - 2.8e-52 175.6 10.1 3e-28 98.1 0.8 3.1 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|313126978|ref|YP_004037248.1| - 1.3e-27 95.1 10.9 2.8e-15 55.6 0.1 3.5 4 0 0 4 4 4 2 TrkA-C domain Shikimate_DH PF01488.15 gi|313126978|ref|YP_004037248.1| - 1.4e-13 51.0 1.3 4.8e-06 26.7 0.1 3.0 2 1 1 3 3 3 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|313126978|ref|YP_004037248.1| - 3.8e-12 46.3 2.3 6e-06 26.4 0.4 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|313126978|ref|YP_004037248.1| - 7.5e-09 35.8 6.7 0.00069 19.6 1.1 2.3 2 0 0 2 2 2 2 NADH(P)-binding Saccharop_dh PF03435.13 gi|313126978|ref|YP_004037248.1| - 2e-08 33.6 2.5 0.00027 20.0 0.2 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase FAD_binding_3 PF01494.14 gi|313126978|ref|YP_004037248.1| - 5.1e-08 32.3 0.2 0.0013 17.8 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain F420_oxidored PF03807.12 gi|313126978|ref|YP_004037248.1| - 1.3e-07 31.9 4.3 7.4e-05 23.1 0.3 3.9 3 1 1 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|313126978|ref|YP_004037248.1| - 1.5e-06 28.2 0.6 0.035 13.9 0.1 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|313126978|ref|YP_004037248.1| - 2.9e-06 26.8 0.1 1.4e-05 24.5 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|313126978|ref|YP_004037248.1| - 3.2e-06 26.9 0.0 0.00044 20.0 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|313126978|ref|YP_004037248.1| - 6.6e-06 25.6 0.1 0.00012 21.5 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|313126978|ref|YP_004037248.1| - 7.5e-06 26.2 0.8 0.19 12.1 0.0 3.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|313126978|ref|YP_004037248.1| - 1e-05 25.2 0.5 0.0035 17.0 0.2 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|313126978|ref|YP_004037248.1| - 7.8e-05 22.9 1.1 0.023 14.9 0.1 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|313126978|ref|YP_004037248.1| - 8.1e-05 22.5 0.3 0.048 13.5 0.1 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.19 gi|313126978|ref|YP_004037248.1| - 0.00025 20.0 0.7 0.052 12.4 0.1 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase ADH_zinc_N PF00107.21 gi|313126978|ref|YP_004037248.1| - 0.00057 19.4 2.3 0.077 12.5 0.1 4.0 4 1 0 4 4 4 1 Zinc-binding dehydrogenase Oxidored_nitro PF00148.14 gi|313126978|ref|YP_004037248.1| - 0.0015 17.2 0.6 0.0059 15.2 0.1 2.1 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase GFO_IDH_MocA PF01408.17 gi|313126978|ref|YP_004037248.1| - 0.002 18.6 0.4 0.057 13.9 0.1 2.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|313126978|ref|YP_004037248.1| - 0.0047 16.1 0.0 1.2 8.2 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|313126978|ref|YP_004037248.1| - 0.0056 16.7 1.1 3.5 7.7 0.0 3.7 3 1 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_8 PF13450.1 gi|313126978|ref|YP_004037248.1| - 0.008 16.1 0.1 0.36 10.8 0.0 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DUF2325 PF10087.4 gi|313126978|ref|YP_004037248.1| - 0.04 13.7 0.1 1.2 9.0 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) AlaDh_PNT_C PF01262.16 gi|313126978|ref|YP_004037248.1| - 0.04 13.4 0.1 0.36 10.3 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|313126978|ref|YP_004037248.1| - 0.048 12.5 0.0 0.14 11.0 0.0 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Rossmann-like PF10727.4 gi|313126978|ref|YP_004037248.1| - 0.078 12.7 5.5 2.8 7.6 0.8 3.0 2 1 0 2 2 2 0 Rossmann-like domain Methyltransf_18 PF12847.2 gi|313126978|ref|YP_004037248.1| - 0.13 12.8 2.0 3.4 8.2 0.1 3.1 2 2 0 2 2 2 0 Methyltransferase domain ThiF PF00899.16 gi|313126978|ref|YP_004037248.1| - 0.24 11.2 11.0 0.58 9.9 0.3 4.2 2 2 2 4 4 4 0 ThiF family PcrB PF01884.12 gi|313126979|ref|YP_004037249.1| - 8.1e-39 133.2 1.2 1.2e-38 132.6 0.8 1.3 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|313126979|ref|YP_004037249.1| - 0.00014 21.2 0.0 0.00028 20.2 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|313126979|ref|YP_004037249.1| - 0.00078 18.0 0.0 0.024 13.1 0.0 2.3 3 0 0 3 3 3 1 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|313126979|ref|YP_004037249.1| - 0.0034 16.3 1.5 0.17 10.7 0.0 2.4 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|313126979|ref|YP_004037249.1| - 0.12 11.2 0.1 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Polyketide_cyc2 PF10604.4 gi|313126980|ref|YP_004037250.1| - 3.4e-12 46.7 0.4 4.7e-12 46.2 0.2 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|313126980|ref|YP_004037250.1| - 1.4e-09 38.0 0.2 3.4e-09 36.7 0.1 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|313126980|ref|YP_004037250.1| - 0.0022 18.1 0.1 0.0032 17.5 0.1 1.4 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein SHNi-TPR PF10516.4 gi|313126981|ref|YP_004037251.1| - 0.34 10.1 1.4 13 5.0 0.2 2.3 2 0 0 2 2 2 0 SHNi-TPR Pyr_redox_2 PF07992.9 gi|313126982|ref|YP_004037252.1| - 6.1e-10 39.3 2.2 2.4e-05 24.3 0.2 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313126982|ref|YP_004037252.1| - 7.8e-10 38.1 3.0 1.1e-07 31.1 0.5 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|313126982|ref|YP_004037252.1| - 3.3e-07 29.6 3.8 2.6e-05 23.4 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|313126982|ref|YP_004037252.1| - 4.7e-07 29.0 7.3 3e-05 23.0 0.8 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|313126982|ref|YP_004037252.1| - 3.6e-05 23.0 2.6 3.6e-05 23.0 1.8 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|313126982|ref|YP_004037252.1| - 5e-05 22.3 0.2 9.2e-05 21.4 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|313126982|ref|YP_004037252.1| - 0.00026 20.9 1.1 0.00044 20.2 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|313126982|ref|YP_004037252.1| - 0.00069 18.7 0.9 0.0037 16.3 0.1 2.3 2 1 1 3 3 3 1 Thi4 family HI0933_like PF03486.9 gi|313126982|ref|YP_004037252.1| - 0.0021 16.6 0.1 0.0032 15.9 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|313126982|ref|YP_004037252.1| - 0.003 17.9 1.1 0.0071 16.7 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|313126982|ref|YP_004037252.1| - 0.015 14.9 0.2 0.055 13.1 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|313126982|ref|YP_004037252.1| - 0.016 13.8 5.2 0.93 8.0 1.2 2.2 1 1 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|313126982|ref|YP_004037252.1| - 0.023 13.6 0.3 0.056 12.3 0.2 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein ThiF PF00899.16 gi|313126982|ref|YP_004037252.1| - 0.065 13.0 0.4 0.12 12.1 0.3 1.4 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.16 gi|313126982|ref|YP_004037252.1| - 0.13 11.8 0.2 0.28 10.7 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DFP PF04127.10 gi|313126983|ref|YP_004037253.1| - 1.2e-50 171.7 3.6 3.4e-50 170.2 0.4 2.4 3 0 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|313126983|ref|YP_004037253.1| - 2.8e-27 94.9 0.7 5.3e-27 94.0 0.0 1.8 2 1 0 2 2 2 1 Flavoprotein PhaG_MnhG_YufB PF03334.9 gi|313126984|ref|YP_004037254.1| - 6.5e-25 86.9 7.6 9.2e-25 86.5 5.3 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|313126985|ref|YP_004037255.1| - 1.3e-19 70.1 5.9 1.3e-19 70.1 4.1 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) SYS1 PF09801.4 gi|313126985|ref|YP_004037255.1| - 0.019 14.9 1.0 0.023 14.7 0.7 1.0 1 0 0 1 1 1 0 Integral membrane protein S linking to the trans Golgi network CoA_transf_3 PF02515.12 gi|313126985|ref|YP_004037255.1| - 0.03 13.5 0.3 0.034 13.3 0.2 1.1 1 0 0 1 1 1 0 CoA-transferase family III DUF3368 PF11848.3 gi|313126985|ref|YP_004037255.1| - 0.16 11.5 0.9 5.3 6.6 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) PhaG_MnhG_YufB PF03334.9 gi|313126985|ref|YP_004037255.1| - 3.2 7.8 8.3 0.87 9.6 3.4 1.7 2 0 0 2 2 2 0 Na+/H+ antiporter subunit DUF2611 PF11022.3 gi|313126985|ref|YP_004037255.1| - 5.1 7.2 6.2 7.9 6.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2611) MNHE PF01899.11 gi|313126986|ref|YP_004037256.1| - 8.7e-44 148.8 2.2 1e-43 148.6 1.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF2955 PF11168.3 gi|313126986|ref|YP_004037256.1| - 0.0028 17.3 1.8 0.013 15.2 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2955) Oxidored_q1 PF00361.15 gi|313126987|ref|YP_004037257.1| - 6.4e-46 156.7 13.2 6.4e-46 156.7 9.2 2.8 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q2 PF00420.19 gi|313126988|ref|YP_004037258.1| - 2.3e-25 87.9 2.3 2.7e-25 87.7 1.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TrbC PF04956.8 gi|313126988|ref|YP_004037258.1| - 1 9.4 5.9 0.58 10.1 0.9 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF1049 PF06305.6 gi|313126988|ref|YP_004037258.1| - 3.7 7.1 6.9 6.3 6.3 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) MnhB PF04039.8 gi|313126989|ref|YP_004037259.1| - 2.3e-23 82.5 16.1 2.7e-22 79.1 11.2 1.9 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4231 PF14015.1 gi|313126989|ref|YP_004037259.1| - 0.62 10.0 5.5 0.6 10.1 0.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) EI24 PF07264.6 gi|313126989|ref|YP_004037259.1| - 0.76 9.1 10.6 0.038 13.4 3.2 1.8 2 1 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Oxidored_q1 PF00361.15 gi|313126990|ref|YP_004037260.1| - 8.1e-67 225.3 12.9 8.1e-67 225.3 9.0 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|313126990|ref|YP_004037260.1| - 5.9e-15 55.0 10.9 5.9e-15 55.0 7.6 5.1 6 0 0 6 6 6 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|313126990|ref|YP_004037260.1| - 1.8e-08 33.7 0.0 7.8e-08 31.7 0.0 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_20 PF12840.2 gi|313126991|ref|YP_004037261.1| - 7.8e-09 35.2 0.3 1.1e-08 34.7 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313126991|ref|YP_004037261.1| - 5.5e-07 29.1 0.1 8.1e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313126991|ref|YP_004037261.1| - 1.2e-06 28.0 0.1 1.7e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313126991|ref|YP_004037261.1| - 5.8e-06 25.5 0.0 7.8e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|313126991|ref|YP_004037261.1| - 7.2e-05 22.7 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|313126991|ref|YP_004037261.1| - 7.8e-05 22.3 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313126991|ref|YP_004037261.1| - 0.00016 21.2 0.1 0.0002 20.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|313126991|ref|YP_004037261.1| - 0.00028 20.5 0.0 0.00043 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|313126991|ref|YP_004037261.1| - 0.00053 19.6 0.1 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|313126991|ref|YP_004037261.1| - 0.00065 19.7 0.0 0.001 19.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator FUR PF01475.14 gi|313126991|ref|YP_004037261.1| - 0.00065 19.6 0.0 0.00076 19.3 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_AsnC-type PF13404.1 gi|313126991|ref|YP_004037261.1| - 0.00065 19.1 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.1 gi|313126991|ref|YP_004037261.1| - 0.00067 19.7 0.1 0.00087 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|313126991|ref|YP_004037261.1| - 0.0017 17.9 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|313126991|ref|YP_004037261.1| - 0.0021 18.3 0.1 0.0031 17.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|313126991|ref|YP_004037261.1| - 0.0024 17.4 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_30 PF13556.1 gi|313126991|ref|YP_004037261.1| - 0.0044 16.5 0.0 0.0082 15.7 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain RP-C PF03428.8 gi|313126991|ref|YP_004037261.1| - 0.005 16.3 0.0 0.0071 15.8 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain TFIIE_alpha PF02002.12 gi|313126991|ref|YP_004037261.1| - 0.013 14.9 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|313126991|ref|YP_004037261.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|313126991|ref|YP_004037261.1| - 0.019 14.5 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Mga PF05043.8 gi|313126991|ref|YP_004037261.1| - 0.033 14.4 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|313126991|ref|YP_004037261.1| - 0.052 12.7 0.0 0.098 11.8 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.7 gi|313126991|ref|YP_004037261.1| - 0.063 12.7 0.1 0.13 11.7 0.0 1.6 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|313126991|ref|YP_004037261.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Pribosyltran PF00156.22 gi|313126993|ref|YP_004037263.1| - 1.2e-19 70.2 1.0 1.2e-19 70.2 0.7 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|313126993|ref|YP_004037263.1| - 0.00018 20.8 0.1 0.00025 20.2 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF2529 PF10740.4 gi|313126993|ref|YP_004037263.1| - 0.0067 15.8 0.2 0.015 14.7 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2529) PRTase_2 PF15609.1 gi|313126993|ref|YP_004037263.1| - 0.0084 15.4 0.6 0.012 14.9 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase PRTase_3 PF15610.1 gi|313126993|ref|YP_004037263.1| - 0.063 12.1 0.1 0.081 11.8 0.1 1.1 1 0 0 1 1 1 0 PRTase ComF-like SBP_bac_5 PF00496.17 gi|313126994|ref|YP_004037264.1| - 3.5e-56 190.6 6.3 4.6e-56 190.2 4.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313126994|ref|YP_004037264.1| - 0.05 13.6 1.4 0.096 12.7 1.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|313126995|ref|YP_004037265.1| - 3.5e-31 108.1 10.3 3.5e-31 108.1 7.1 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|313126995|ref|YP_004037265.1| - 0.021 14.6 3.2 0.021 14.6 2.2 3.2 3 0 0 3 3 3 0 FtsX-like permease family Bac_export_3 PF01313.14 gi|313126995|ref|YP_004037265.1| - 0.1 12.2 0.1 0.1 12.2 0.1 3.4 5 0 0 5 5 5 0 Bacterial export proteins, family 3 TPR_2 PF07719.12 gi|313126995|ref|YP_004037265.1| - 0.13 12.2 0.2 0.31 11.0 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Abi PF02517.11 gi|313126995|ref|YP_004037265.1| - 1 9.5 7.6 1.1e+02 3.0 5.3 2.9 1 1 0 1 1 1 0 CAAX protease self-immunity DUF2909 PF11137.3 gi|313126995|ref|YP_004037265.1| - 1.3 8.8 7.0 35 4.2 0.7 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2909) BPD_transp_1 PF00528.17 gi|313126996|ref|YP_004037266.1| - 2.8e-29 101.9 5.0 2.8e-29 101.9 3.4 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313126996|ref|YP_004037266.1| - 1.6e-09 36.9 0.0 1.6e-09 36.9 0.0 3.0 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C CcmD PF04995.9 gi|313126996|ref|YP_004037266.1| - 0.23 11.2 0.1 0.23 11.2 0.1 2.3 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) ABC_tran PF00005.22 gi|313126997|ref|YP_004037267.1| - 4.2e-26 91.8 0.0 6.1e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313126997|ref|YP_004037267.1| - 3.4e-18 65.7 1.5 6.7e-18 64.8 0.5 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313126997|ref|YP_004037267.1| - 2.4e-08 34.3 0.1 4e-07 30.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313126997|ref|YP_004037267.1| - 0.00056 19.9 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313126997|ref|YP_004037267.1| - 0.00057 20.0 0.2 0.059 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|313126997|ref|YP_004037267.1| - 0.00097 18.4 0.0 0.0021 17.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|313126997|ref|YP_004037267.1| - 0.0036 16.7 0.0 0.041 13.3 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|313126997|ref|YP_004037267.1| - 0.0077 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|313126997|ref|YP_004037267.1| - 0.01 15.3 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|313126997|ref|YP_004037267.1| - 0.014 14.5 0.0 0.037 13.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|313126997|ref|YP_004037267.1| - 0.029 13.8 0.2 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|313126997|ref|YP_004037267.1| - 0.031 13.9 0.0 0.067 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|313126997|ref|YP_004037267.1| - 0.032 13.9 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|313126997|ref|YP_004037267.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|313126997|ref|YP_004037267.1| - 0.15 12.3 0.0 0.78 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|313126998|ref|YP_004037268.1| - 9.6e-34 116.6 0.0 1.5e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313126998|ref|YP_004037268.1| - 2.6e-21 75.7 0.4 1.3e-20 73.4 0.3 2.1 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313126998|ref|YP_004037268.1| - 5.3e-08 33.1 0.1 2.7e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313126998|ref|YP_004037268.1| - 0.00016 21.7 0.1 0.0012 18.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313126998|ref|YP_004037268.1| - 0.00047 20.4 0.0 0.0011 19.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|313126998|ref|YP_004037268.1| - 0.029 13.5 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|313126998|ref|YP_004037268.1| - 0.037 13.5 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|313126998|ref|YP_004037268.1| - 0.045 13.2 0.0 0.098 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|313126998|ref|YP_004037268.1| - 0.077 12.3 1.9 0.091 12.1 0.1 2.1 3 1 0 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|313126998|ref|YP_004037268.1| - 0.12 12.3 3.8 0.097 12.6 0.3 2.4 2 1 0 2 2 2 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|313126998|ref|YP_004037268.1| - 0.17 11.3 0.1 1.1 8.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DJ-1_PfpI PF01965.19 gi|313126999|ref|YP_004037269.1| - 2.8e-16 59.3 0.4 1.3e-15 57.1 0.3 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|313126999|ref|YP_004037269.1| - 0.018 14.2 0.4 0.19 10.9 0.1 2.2 2 1 0 2 2 2 0 Putative amidotransferase ThuA PF06283.6 gi|313126999|ref|YP_004037269.1| - 0.097 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation HTH_5 PF01022.15 gi|313127000|ref|YP_004037270.1| - 5.5e-06 25.9 0.0 7.7e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313127000|ref|YP_004037270.1| - 1.9e-05 24.3 0.0 3.6e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|313127000|ref|YP_004037270.1| - 0.00036 20.1 0.0 0.00053 19.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|313127000|ref|YP_004037270.1| - 0.0059 16.1 0.1 0.01 15.3 0.0 1.5 1 1 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|313127000|ref|YP_004037270.1| - 0.023 14.2 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain zf-trcl PF13451.1 gi|313127000|ref|YP_004037270.1| - 0.039 13.6 0.9 0.039 13.6 0.6 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Zn-ribbon_8 PF09723.5 gi|313127000|ref|YP_004037270.1| - 0.98 9.4 4.0 2.5 8.1 2.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|313127000|ref|YP_004037270.1| - 2.6 8.1 5.0 0.84 9.6 0.2 2.2 1 1 1 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|313127000|ref|YP_004037270.1| - 8.7 6.1 6.5 14 5.4 0.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NTP_transferase PF00483.18 gi|313127001|ref|YP_004037271.1| - 4.2e-38 131.0 0.0 5.6e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313127001|ref|YP_004037271.1| - 1.7e-09 37.9 0.0 2.2e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Pentapeptide_3 PF13576.1 gi|313127001|ref|YP_004037271.1| - 0.019 14.8 0.4 0.49 10.3 0.0 2.4 2 1 1 3 3 3 0 Pentapeptide repeats (9 copies) IspD PF01128.14 gi|313127001|ref|YP_004037271.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATP_bind_4 PF01902.12 gi|313127002|ref|YP_004037272.1| - 3.3e-58 196.6 0.0 7e-58 195.5 0.0 1.5 1 1 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|313127002|ref|YP_004037272.1| - 0.12 11.8 0.1 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.14 gi|313127003|ref|YP_004037273.1| - 1.9e-21 76.6 0.0 7e-19 68.3 0.0 2.8 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|313127003|ref|YP_004037273.1| - 0.03 13.6 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region ATP_bind_3 PF01171.15 gi|313127003|ref|YP_004037273.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 PP-loop family UL11 PF11094.3 gi|313127003|ref|YP_004037273.1| - 0.16 11.7 0.2 0.5 10.2 0.2 1.8 1 0 0 1 1 1 0 Membrane-associated tegument protein PAPS_reduct PF01507.14 gi|313127004|ref|YP_004037274.1| - 6.7e-20 71.6 0.0 3e-16 59.7 0.0 3.0 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|313127004|ref|YP_004037274.1| - 0.0037 16.6 0.0 0.036 13.4 0.0 2.2 2 0 0 2 2 2 1 ATP-binding region ATP_bind_3 PF01171.15 gi|313127004|ref|YP_004037274.1| - 0.1 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Glutaredoxin PF00462.19 gi|313127006|ref|YP_004037276.1| - 2.3e-15 56.3 0.0 3.6e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|313127006|ref|YP_004037276.1| - 0.0098 16.0 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Pribosyltran PF00156.22 gi|313127007|ref|YP_004037277.1| - 2.6e-23 82.0 0.1 4.6e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|313127007|ref|YP_004037277.1| - 0.00014 21.4 0.0 0.00036 20.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.10 gi|313127007|ref|YP_004037277.1| - 0.0051 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|313127007|ref|YP_004037277.1| - 0.0071 16.3 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain PRTase_2 PF15609.1 gi|313127007|ref|YP_004037277.1| - 0.01 15.1 0.1 0.097 11.9 0.0 2.0 2 0 0 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|313127007|ref|YP_004037277.1| - 0.012 14.8 0.0 0.018 14.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_11 PF08279.7 gi|313127007|ref|YP_004037277.1| - 0.017 14.7 0.1 0.067 12.8 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.1 gi|313127007|ref|YP_004037277.1| - 0.025 13.9 0.0 0.05 12.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|313127007|ref|YP_004037277.1| - 0.032 13.5 0.0 0.056 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|313127007|ref|YP_004037277.1| - 0.13 11.9 0.0 0.36 10.5 0.0 1.7 1 0 0 1 1 1 0 MarR family CENP-B_N PF04218.8 gi|313127007|ref|YP_004037277.1| - 0.15 11.5 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain ADH_N PF08240.7 gi|313127008|ref|YP_004037278.1| - 6.8e-11 41.8 0.0 1.1e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|313127008|ref|YP_004037278.1| - 5e-07 29.3 0.0 8.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Lyase_1 PF00206.15 gi|313127009|ref|YP_004037279.1| - 1.2e-48 165.9 0.0 1.5e-48 165.5 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|313127009|ref|YP_004037279.1| - 1.2e-40 137.8 0.0 2.4e-40 136.9 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal MRFAP1 PF15155.1 gi|313127009|ref|YP_004037279.1| - 0.042 14.1 0.1 0.15 12.3 0.1 1.9 1 0 0 1 1 1 0 MORF4 family-associated protein1 AICARFT_IMPCHas PF01808.13 gi|313127010|ref|YP_004037280.1| - 1.9e-86 290.0 0.0 2.5e-86 289.6 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|313127010|ref|YP_004037280.1| - 1.2e-39 135.7 0.0 2.9e-39 134.4 0.0 1.6 2 0 0 2 2 2 1 Formyl transferase Usp PF00582.21 gi|313127011|ref|YP_004037281.1| - 9.1e-34 116.6 2.7 1e-33 116.4 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family IPT PF01745.11 gi|313127011|ref|YP_004037281.1| - 0.028 13.5 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase Pterin_bind PF00809.17 gi|313127012|ref|YP_004037282.1| - 6e-69 231.6 0.1 1.1e-68 230.7 0.1 1.5 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|313127012|ref|YP_004037282.1| - 8.9e-18 65.0 0.0 2.3e-17 63.6 0.0 1.7 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|313127012|ref|YP_004037282.1| - 4.2e-10 39.5 0.0 1.5e-09 37.7 0.0 2.0 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain NRDE PF05742.7 gi|313127013|ref|YP_004037283.1| - 1.4e-22 80.3 0.0 1.2e-21 77.2 0.0 1.9 1 1 0 1 1 1 1 NRDE protein MarR PF01047.17 gi|313127014|ref|YP_004037284.1| - 0.0073 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|313127014|ref|YP_004037284.1| - 0.034 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Ribosomal_L37ae PF01780.14 gi|313127015|ref|YP_004037285.1| - 0.04 13.7 0.1 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family Proteasome PF00227.21 gi|313127016|ref|YP_004037286.1| - 2.1e-59 200.0 0.0 2.6e-59 199.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|313127016|ref|YP_004037286.1| - 2.8e-14 52.1 0.1 4.5e-14 51.4 0.1 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|313127017|ref|YP_004037287.1| - 1.1e-23 83.2 0.0 1.4e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Methyltransf_31 PF13847.1 gi|313127018|ref|YP_004037288.1| - 2.1e-19 69.6 0.0 3.6e-19 68.8 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313127018|ref|YP_004037288.1| - 1.2e-16 61.2 0.4 3.3e-16 59.8 0.2 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313127018|ref|YP_004037288.1| - 2.4e-14 53.5 0.1 5.6e-14 52.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127018|ref|YP_004037288.1| - 4.1e-12 46.4 0.0 9.2e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313127018|ref|YP_004037288.1| - 1.8e-11 44.2 0.0 4.1e-11 43.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313127018|ref|YP_004037288.1| - 1.1e-09 37.8 0.0 2e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|313127018|ref|YP_004037288.1| - 3e-09 36.4 0.0 4.4e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|313127018|ref|YP_004037288.1| - 2.7e-08 33.7 0.1 4.9e-08 32.8 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127018|ref|YP_004037288.1| - 4.1e-08 33.2 0.4 6.3e-08 32.6 0.3 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|313127018|ref|YP_004037288.1| - 2.1e-06 27.4 0.1 3.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|313127018|ref|YP_004037288.1| - 5.5e-05 22.3 0.0 8.7e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|313127018|ref|YP_004037288.1| - 9.8e-05 21.6 0.1 0.00014 21.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|313127018|ref|YP_004037288.1| - 0.00041 20.0 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|313127018|ref|YP_004037288.1| - 0.00086 18.0 0.0 0.0013 17.5 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|313127018|ref|YP_004037288.1| - 0.0051 15.8 0.0 0.016 14.2 0.0 1.7 2 1 0 2 2 2 1 Putative methyltransferase DREV PF05219.7 gi|313127018|ref|YP_004037288.1| - 0.0062 15.4 0.0 0.0094 14.8 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.15 gi|313127018|ref|YP_004037288.1| - 0.012 14.6 0.0 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|313127018|ref|YP_004037288.1| - 0.019 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N PF00107.21 gi|313127018|ref|YP_004037288.1| - 0.085 12.4 0.1 0.18 11.3 0.1 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF3650 PF12368.3 gi|313127018|ref|YP_004037288.1| - 0.11 11.9 0.8 0.99 8.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) Reovirus_L2 PF06016.6 gi|313127018|ref|YP_004037288.1| - 0.12 9.3 0.0 0.15 8.9 0.0 1.0 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) Methyltransf_16 PF10294.4 gi|313127018|ref|YP_004037288.1| - 0.14 11.5 0.0 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase FtsJ PF01728.14 gi|313127018|ref|YP_004037288.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase GidB PF02527.10 gi|313127018|ref|YP_004037288.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MethyltransfD12 PF02086.10 gi|313127018|ref|YP_004037288.1| - 0.17 11.3 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase RNase_P_p30 PF01876.11 gi|313127019|ref|YP_004037289.1| - 7e-31 106.4 0.0 1.1e-30 105.9 0.0 1.3 1 1 0 1 1 1 1 RNase P subunit p30 HEM4 PF02602.10 gi|313127019|ref|YP_004037289.1| - 0.022 14.0 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Arch_flagellin PF01917.11 gi|313127020|ref|YP_004037290.1| - 0.00043 19.9 0.9 0.0012 18.4 0.6 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin RskA PF10099.4 gi|313127020|ref|YP_004037290.1| - 0.0096 15.6 0.6 0.087 12.5 0.1 2.1 2 0 0 2 2 2 1 Anti-sigma-K factor rskA Peptidase_M20 PF01546.23 gi|313127021|ref|YP_004037291.1| - 4.1e-27 94.9 0.5 5e-27 94.6 0.3 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|313127021|ref|YP_004037291.1| - 1.1e-17 63.8 0.1 2.6e-17 62.5 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain DAP_epimerase PF01678.14 gi|313127022|ref|YP_004037292.1| - 1.3e-48 163.9 3.2 1e-24 86.7 0.3 2.8 2 1 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|313127022|ref|YP_004037292.1| - 0.0031 16.3 0.2 0.54 9.0 0.0 2.2 2 0 0 2 2 2 2 Proline racemase Orn_Arg_deC_N PF02784.11 gi|313127023|ref|YP_004037293.1| - 4.5e-38 130.8 0.0 5.9e-38 130.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|313127023|ref|YP_004037293.1| - 3.1e-20 72.0 0.0 5.4e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THDPS_N_2 PF14805.1 gi|313127024|ref|YP_004037294.1| - 1.7e-17 63.0 0.0 2.4e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|313127024|ref|YP_004037294.1| - 5.7e-12 44.5 2.5 3.1e-05 23.2 0.2 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313127024|ref|YP_004037294.1| - 0.00015 21.2 8.7 0.0012 18.3 0.3 3.4 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.9 gi|313127025|ref|YP_004037295.1| - 4.9e-36 123.4 0.0 6.8e-36 122.9 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|313127025|ref|YP_004037295.1| - 2.1e-29 101.9 0.1 3.7e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|313127025|ref|YP_004037295.1| - 3e-06 27.5 0.3 5.8e-06 26.6 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313127025|ref|YP_004037295.1| - 3.6e-06 27.0 1.4 5.7e-06 26.4 1.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|313127025|ref|YP_004037295.1| - 5.4e-06 26.7 0.1 1.2e-05 25.6 0.1 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|313127025|ref|YP_004037295.1| - 4.2e-05 24.0 0.1 7.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.14 gi|313127025|ref|YP_004037295.1| - 0.0009 19.7 0.3 0.0019 18.6 0.2 1.5 1 0 0 1 1 1 1 CoA binding domain Saccharop_dh PF03435.13 gi|313127025|ref|YP_004037295.1| - 0.0015 17.5 0.1 0.0031 16.5 0.1 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase ADH_zinc_N PF00107.21 gi|313127025|ref|YP_004037295.1| - 0.0018 17.7 0.1 0.0028 17.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase RmlD_sub_bind PF04321.12 gi|313127025|ref|YP_004037295.1| - 0.0027 16.6 0.0 0.0042 16.0 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Peripla_BP_6 PF13458.1 gi|313127025|ref|YP_004037295.1| - 0.029 13.7 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein CoA_binding_2 PF13380.1 gi|313127025|ref|YP_004037295.1| - 0.031 14.4 0.2 0.051 13.7 0.2 1.4 1 0 0 1 1 1 0 CoA binding domain Gp_dh_N PF00044.19 gi|313127025|ref|YP_004037295.1| - 0.037 13.9 0.3 0.29 11.0 0.2 2.1 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|313127025|ref|YP_004037295.1| - 0.099 12.0 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DHDPS PF00701.17 gi|313127026|ref|YP_004037296.1| - 4.8e-96 320.7 0.0 5.5e-96 320.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NYN PF01936.13 gi|313127027|ref|YP_004037297.1| - 7.4e-38 130.1 0.2 9e-38 129.8 0.1 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.14 gi|313127027|ref|YP_004037297.1| - 0.0042 15.3 0.1 0.0053 15.0 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like PA PF02225.17 gi|313127029|ref|YP_004037299.1| - 0.1 12.2 0.2 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 PA domain TGT_C2 PF14810.1 gi|313127030|ref|YP_004037300.1| - 3.4e-25 87.6 0.0 5.4e-25 87.0 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|313127030|ref|YP_004037300.1| - 4e-16 58.4 0.2 6e-16 57.9 0.2 1.3 1 0 0 1 1 1 1 PUA domain DUF1119 PF06550.6 gi|313127031|ref|YP_004037301.1| - 6.8e-86 287.9 10.1 9.7e-86 287.3 7.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|313127031|ref|YP_004037301.1| - 5.4e-05 22.7 7.8 0.00071 19.1 0.5 2.8 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.12 gi|313127031|ref|YP_004037301.1| - 0.0017 17.2 2.3 0.05 12.4 1.5 2.4 2 1 0 2 2 2 2 Presenilin Gar1 PF04410.9 gi|313127032|ref|YP_004037302.1| - 4.6e-08 32.6 0.0 4.7e-08 32.6 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|313127032|ref|YP_004037302.1| - 0.085 12.7 0.1 0.16 11.8 0.0 1.5 2 0 0 2 2 2 0 PRC-barrel domain SRP19 PF01922.12 gi|313127033|ref|YP_004037303.1| - 2.9e-27 95.0 0.0 3.1e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.13 gi|313127034|ref|YP_004037304.1| - 4.8e-33 114.2 0.9 7.9e-33 113.5 0.7 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.1 gi|313127034|ref|YP_004037304.1| - 0.00068 19.0 0.2 0.00068 19.0 0.1 2.1 1 1 0 2 2 2 1 Periplasmic binding protein domain DUF1318 PF07027.7 gi|313127034|ref|YP_004037304.1| - 0.089 13.0 1.1 0.21 11.8 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1318) FecCD PF01032.13 gi|313127035|ref|YP_004037305.1| - 3.2e-90 302.1 35.6 3.7e-90 301.9 24.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|313127035|ref|YP_004037305.1| - 2.4e-06 27.0 17.3 2.4e-06 27.0 12.0 1.9 1 1 1 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|313127036|ref|YP_004037306.1| - 4.2e-31 108.0 0.0 6.7e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313127036|ref|YP_004037306.1| - 1.1e-09 38.6 0.3 2.8e-05 24.2 0.1 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313127036|ref|YP_004037306.1| - 9.7e-06 24.9 0.0 2.8e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|313127036|ref|YP_004037306.1| - 1.3e-05 25.3 0.3 3.7e-05 23.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|313127036|ref|YP_004037306.1| - 0.00036 20.9 0.0 0.00049 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313127036|ref|YP_004037306.1| - 0.0012 18.3 0.1 0.0026 17.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|313127036|ref|YP_004037306.1| - 0.0012 18.4 5.8 0.0035 16.9 0.0 2.7 3 0 0 3 3 3 1 AAA domain ABC_ATPase PF09818.4 gi|313127036|ref|YP_004037306.1| - 0.0027 16.3 0.3 1.5 7.3 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|313127036|ref|YP_004037306.1| - 0.0053 16.8 1.0 0.072 13.2 0.7 2.3 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|313127036|ref|YP_004037306.1| - 0.0059 15.7 0.1 0.013 14.7 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|313127036|ref|YP_004037306.1| - 0.0063 16.4 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|313127036|ref|YP_004037306.1| - 0.0074 15.3 0.0 0.015 14.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.24 gi|313127036|ref|YP_004037306.1| - 0.013 15.7 0.1 0.11 12.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|313127036|ref|YP_004037306.1| - 0.016 14.8 0.1 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|313127036|ref|YP_004037306.1| - 0.019 14.6 0.2 0.52 9.9 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.1 gi|313127036|ref|YP_004037306.1| - 0.022 13.7 0.0 0.82 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|313127036|ref|YP_004037306.1| - 0.027 13.8 0.4 0.079 12.3 0.3 1.9 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|313127036|ref|YP_004037306.1| - 0.028 13.3 0.0 0.053 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|313127036|ref|YP_004037306.1| - 0.029 14.2 0.2 0.52 10.2 0.1 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|313127036|ref|YP_004037306.1| - 0.03 13.7 0.6 0.098 12.0 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|313127036|ref|YP_004037306.1| - 0.031 15.0 0.4 0.12 13.1 0.1 2.1 1 1 0 2 2 1 0 AAA domain NAD_binding_7 PF13241.1 gi|313127036|ref|YP_004037306.1| - 0.039 14.2 0.6 0.17 12.1 0.1 2.3 3 1 0 3 3 1 0 Putative NAD(P)-binding AAA_33 PF13671.1 gi|313127036|ref|YP_004037306.1| - 0.048 13.5 0.3 0.18 11.6 0.2 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313127036|ref|YP_004037306.1| - 0.065 12.4 0.1 0.15 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Nitro_FeMo-Co PF02579.12 gi|313127036|ref|YP_004037306.1| - 0.074 13.1 0.7 9.2 6.4 0.1 2.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor PduV-EutP PF10662.4 gi|313127036|ref|YP_004037306.1| - 0.13 11.7 0.0 0.34 10.3 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|313127036|ref|YP_004037306.1| - 0.14 11.0 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|313127036|ref|YP_004037306.1| - 0.14 12.1 0.1 0.28 11.1 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|313127036|ref|YP_004037306.1| - 0.15 10.4 0.0 2.4 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain TFIIB PF00382.14 gi|313127037|ref|YP_004037307.1| - 1.2e-39 133.9 0.1 3e-20 71.7 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313127037|ref|YP_004037307.1| - 5e-18 64.1 3.2 3.5e-17 61.4 2.8 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|313127037|ref|YP_004037307.1| - 3.4e-05 23.7 0.0 0.011 15.6 0.0 2.4 2 0 0 2 2 2 2 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|313127037|ref|YP_004037307.1| - 0.00015 21.3 0.0 0.007 15.9 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain Sigma70_r4 PF04545.11 gi|313127037|ref|YP_004037307.1| - 0.058 12.7 0.0 1.2 8.5 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|313127037|ref|YP_004037307.1| - 0.15 11.3 0.3 0.26 10.5 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|313127037|ref|YP_004037307.1| - 1.6 9.1 5.3 0.21 11.8 0.5 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar NTP_transf_3 PF12804.2 gi|313127038|ref|YP_004037308.1| - 2.3e-36 125.2 0.2 3e-36 124.9 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|313127038|ref|YP_004037308.1| - 0.0032 17.1 0.0 0.0072 15.9 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase Met_10 PF02475.11 gi|313127040|ref|YP_004037310.1| - 1.1e-53 181.8 0.1 8.9e-53 178.8 0.0 2.0 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|313127040|ref|YP_004037310.1| - 2.5e-12 46.8 0.8 1.1e-11 44.8 0.1 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313127040|ref|YP_004037310.1| - 3.5e-10 40.4 0.8 1.7e-09 38.2 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313127040|ref|YP_004037310.1| - 2.4e-09 36.9 0.0 4.6e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313127040|ref|YP_004037310.1| - 1.2e-08 34.5 0.0 2.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|313127040|ref|YP_004037310.1| - 9.3e-08 31.7 0.0 1.4e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|313127040|ref|YP_004037310.1| - 1.8e-07 30.8 0.0 3.1e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|313127040|ref|YP_004037310.1| - 1.2e-05 24.6 0.0 2.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|313127040|ref|YP_004037310.1| - 4.9e-05 22.7 0.0 0.00014 21.3 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|313127040|ref|YP_004037310.1| - 0.00042 20.0 0.0 0.00066 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313127040|ref|YP_004037310.1| - 0.00054 20.3 0.0 0.0014 19.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|313127040|ref|YP_004037310.1| - 0.0017 17.3 0.0 0.0031 16.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) CMAS PF02353.15 gi|313127040|ref|YP_004037310.1| - 0.0021 17.1 0.0 0.0035 16.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|313127040|ref|YP_004037310.1| - 0.0022 18.3 0.0 0.0053 17.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|313127040|ref|YP_004037310.1| - 0.0022 16.9 0.0 0.0038 16.1 0.0 1.4 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_24 PF13578.1 gi|313127040|ref|YP_004037310.1| - 0.029 15.2 4.1 0.13 13.1 0.0 2.8 2 1 1 3 3 3 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127040|ref|YP_004037310.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TPMT PF05724.6 gi|313127040|ref|YP_004037310.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PQQ_2 PF13360.1 gi|313127042|ref|YP_004037312.1| - 9.1e-23 80.9 3.4 4.9e-15 55.6 0.2 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|313127042|ref|YP_004037312.1| - 1.1e-10 41.4 10.5 0.011 15.9 0.0 6.2 6 0 0 6 6 6 4 PQQ-like domain PQQ PF01011.16 gi|313127042|ref|YP_004037312.1| - 5e-08 32.1 0.0 0.0088 15.5 0.0 4.5 4 0 0 4 4 4 3 PQQ enzyme repeat TP_methylase PF00590.15 gi|313127043|ref|YP_004037313.1| - 3.2e-19 69.4 0.6 4.6e-19 68.9 0.4 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|313127044|ref|YP_004037314.1| - 5.8e-49 166.6 20.8 7.1e-49 166.3 14.4 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Glyoxalase_2 PF12681.2 gi|313127046|ref|YP_004037316.1| - 2.4e-23 82.8 5.3 1.6e-13 51.2 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313127046|ref|YP_004037316.1| - 1.5e-19 70.2 3.2 2.5e-12 46.9 0.1 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313127046|ref|YP_004037316.1| - 4.6e-12 45.9 3.7 3.3e-05 23.8 0.1 3.3 2 2 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313127046|ref|YP_004037316.1| - 0.00034 20.5 1.6 0.95 9.3 0.1 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain MatE PF01554.13 gi|313127047|ref|YP_004037317.1| - 4.5e-48 162.9 20.8 6.8e-25 87.5 4.4 2.4 3 0 0 3 3 3 2 MatE MVIN PF03023.9 gi|313127047|ref|YP_004037317.1| - 2.1e-09 36.3 6.0 4.6e-07 28.6 1.4 2.3 2 0 0 2 2 2 2 MviN-like protein Polysacc_synt_C PF14667.1 gi|313127047|ref|YP_004037317.1| - 8.1e-07 28.9 3.3 8.1e-07 28.9 2.3 3.8 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF2955 PF11168.3 gi|313127048|ref|YP_004037318.1| - 0.96 9.1 6.2 0.41 10.2 2.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2955) OrfB_IS605 PF01385.14 gi|313127049|ref|YP_004037319.1| - 6.6e-66 221.9 0.0 9e-66 221.5 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313127049|ref|YP_004037319.1| - 1.8e-16 59.5 0.1 3.2e-16 58.7 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_2 PF13639.1 gi|313127049|ref|YP_004037319.1| - 0.012 15.4 1.3 0.024 14.4 0.9 1.5 1 0 0 1 1 1 0 Ring finger domain zf-C3HC4_3 PF13920.1 gi|313127049|ref|YP_004037319.1| - 0.03 13.9 1.0 0.05 13.2 0.7 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) AAA_25 PF13481.1 gi|313127049|ref|YP_004037319.1| - 0.078 12.3 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain zf-RING_4 PF14570.1 gi|313127049|ref|YP_004037319.1| - 0.77 9.3 3.3 1.6 8.3 2.3 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain DUF2147 PF09917.4 gi|313127050|ref|YP_004037320.1| - 0.011 15.9 0.0 0.041 14.1 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2147) MMR_HSR1 PF01926.18 gi|313127051|ref|YP_004037321.1| - 6.1e-21 74.5 0.0 1.2e-20 73.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|313127051|ref|YP_004037321.1| - 1.1e-13 50.8 0.3 9.6e-13 47.7 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|313127051|ref|YP_004037321.1| - 2.6e-10 39.9 0.0 4.6e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|313127051|ref|YP_004037321.1| - 7.1e-05 22.6 0.0 0.07 12.9 0.0 2.5 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.11 gi|313127051|ref|YP_004037321.1| - 0.00031 19.9 0.0 0.00069 18.7 0.0 1.5 1 0 0 1 1 1 1 AIG1 family Arf PF00025.16 gi|313127051|ref|YP_004037321.1| - 0.0043 16.2 0.1 0.3 10.3 0.0 2.5 2 1 0 2 2 2 1 ADP-ribosylation factor family ABC_tran PF00005.22 gi|313127051|ref|YP_004037321.1| - 0.0045 17.2 0.0 0.37 11.0 0.0 2.4 2 0 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|313127051|ref|YP_004037321.1| - 0.0046 16.1 0.1 0.014 14.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|313127051|ref|YP_004037321.1| - 0.0047 15.7 0.5 0.017 13.9 0.0 2.1 2 1 0 2 2 2 1 ArgK protein Miro PF08477.8 gi|313127051|ref|YP_004037321.1| - 0.0081 16.6 0.0 0.022 15.2 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein cobW PF02492.14 gi|313127051|ref|YP_004037321.1| - 0.0081 15.6 0.5 2 7.8 0.0 2.6 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|313127051|ref|YP_004037321.1| - 0.0094 15.9 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|313127051|ref|YP_004037321.1| - 0.011 15.2 0.1 0.95 8.8 0.0 2.8 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|313127051|ref|YP_004037321.1| - 0.028 13.9 0.1 1.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Surf_Ag_VNR PF07244.10 gi|313127051|ref|YP_004037321.1| - 0.029 14.7 0.8 0.19 12.1 0.2 2.7 2 1 1 3 3 3 0 Surface antigen variable number repeat AAA_16 PF13191.1 gi|313127051|ref|YP_004037321.1| - 0.033 14.1 0.0 0.072 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|313127051|ref|YP_004037321.1| - 0.034 13.6 0.2 0.091 12.2 0.2 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|313127051|ref|YP_004037321.1| - 0.052 14.3 0.9 0.47 11.2 0.2 2.9 1 1 1 2 2 2 0 AAA domain MobB PF03205.9 gi|313127051|ref|YP_004037321.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|313127051|ref|YP_004037321.1| - 0.13 12.5 0.9 0.62 10.3 0.1 2.5 2 1 0 2 2 1 0 AAA domain Propep_M14 PF02244.11 gi|313127052|ref|YP_004037322.1| - 0.03 13.9 0.0 0.44 10.2 0.0 2.0 2 0 0 2 2 2 0 Carboxypeptidase activation peptide Cyt_c_ox_IV PF12270.3 gi|313127053|ref|YP_004037323.1| - 0.16 11.7 3.1 0.091 12.5 0.5 1.8 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV DUF4345 PF14248.1 gi|313127053|ref|YP_004037323.1| - 1 8.7 9.4 1.9 7.9 6.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4345) NfeD PF01957.13 gi|313127054|ref|YP_004037324.1| - 0.017 15.2 0.1 0.02 15.0 0.1 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3007 PF11460.3 gi|313127054|ref|YP_004037324.1| - 0.3 11.1 1.1 0.42 10.6 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3007) COX1 PF00115.15 gi|313127055|ref|YP_004037325.1| - 3.5e-158 526.9 56.0 3.5e-158 526.9 38.8 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2937 PF11157.3 gi|313127056|ref|YP_004037326.1| - 0.25 10.6 0.1 0.25 10.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Usp PF00582.21 gi|313127057|ref|YP_004037327.1| - 9.7e-20 71.1 0.4 1.1e-19 70.9 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.19 gi|313127057|ref|YP_004037327.1| - 0.022 14.2 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain ArsC PF03960.10 gi|313127057|ref|YP_004037327.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 ArsC family Acetyltransf_1 PF00583.19 gi|313127058|ref|YP_004037328.1| - 3.3e-17 62.2 0.0 5.5e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313127058|ref|YP_004037328.1| - 2.8e-13 50.0 0.1 5.1e-13 49.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313127058|ref|YP_004037328.1| - 1.3e-12 47.7 0.0 2.4e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313127058|ref|YP_004037328.1| - 5.5e-09 36.1 0.0 9e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|313127058|ref|YP_004037328.1| - 4.9e-07 29.9 0.2 8.7e-07 29.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313127058|ref|YP_004037328.1| - 1.1e-05 25.2 0.4 4.7e-05 23.2 0.1 2.1 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313127058|ref|YP_004037328.1| - 1.4e-05 24.7 0.0 2.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|313127058|ref|YP_004037328.1| - 2.2e-05 24.3 0.2 7.8e-05 22.5 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313127058|ref|YP_004037328.1| - 0.0035 17.2 0.0 0.0081 16.0 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase AMP-binding PF00501.23 gi|313127059|ref|YP_004037329.1| - 1.2e-90 303.9 3.2 1.4e-90 303.7 2.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313127059|ref|YP_004037329.1| - 1.7e-17 64.1 0.1 5e-17 62.6 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3797 PF12677.2 gi|313127060|ref|YP_004037330.1| - 0.11 12.1 0.0 0.28 10.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) AMP-binding PF00501.23 gi|313127061|ref|YP_004037331.1| - 6.8e-94 314.6 0.0 8e-94 314.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313127061|ref|YP_004037331.1| - 1.8e-18 67.2 0.6 4.3e-18 66.0 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MM_CoA_mutase PF01642.17 gi|313127062|ref|YP_004037332.1| - 4.6e-191 635.4 0.4 5.2e-191 635.2 0.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase NosL PF05573.7 gi|313127063|ref|YP_004037333.1| - 2.5e-31 108.3 0.0 3e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 NosL TAT_signal PF10518.4 gi|313127063|ref|YP_004037333.1| - 0.0006 19.6 3.3 0.0013 18.6 2.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NosD PF05048.8 gi|313127064|ref|YP_004037334.1| - 3.6e-31 108.1 0.0 2.4e-29 102.1 0.0 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|313127064|ref|YP_004037334.1| - 1.2e-15 57.6 4.2 4.2e-13 49.3 1.1 2.5 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.7 gi|313127064|ref|YP_004037334.1| - 7.7e-11 41.9 0.0 1.4e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.2 gi|313127064|ref|YP_004037334.1| - 3.5e-10 40.3 0.7 3.5e-10 40.3 0.5 2.2 2 0 0 2 2 2 1 Pectate lyase superfamily protein ABC_tran PF00005.22 gi|313127065|ref|YP_004037335.1| - 1.1e-25 90.5 0.0 1.9e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313127065|ref|YP_004037335.1| - 2.3e-17 63.9 0.0 7.9e-13 49.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313127065|ref|YP_004037335.1| - 6.1e-05 22.4 0.1 0.00013 21.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313127065|ref|YP_004037335.1| - 0.00014 21.1 0.0 0.031 13.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313127065|ref|YP_004037335.1| - 0.00049 20.4 0.0 0.0006 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313127065|ref|YP_004037335.1| - 0.00091 18.4 0.1 0.0014 17.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313127065|ref|YP_004037335.1| - 0.0021 18.0 0.0 0.0038 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|313127065|ref|YP_004037335.1| - 0.0035 17.2 0.0 0.0073 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313127065|ref|YP_004037335.1| - 0.025 13.6 0.0 0.25 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Dynamin_N PF00350.18 gi|313127065|ref|YP_004037335.1| - 0.027 14.2 0.9 0.049 13.4 0.6 1.3 1 0 0 1 1 1 0 Dynamin family AAA_25 PF13481.1 gi|313127065|ref|YP_004037335.1| - 0.036 13.4 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313127065|ref|YP_004037335.1| - 0.069 13.9 0.0 0.11 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313127065|ref|YP_004037335.1| - 0.069 12.5 0.0 0.95 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|313127065|ref|YP_004037335.1| - 0.078 12.3 0.0 3.3 7.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MobB PF03205.9 gi|313127065|ref|YP_004037335.1| - 0.093 12.4 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|313127065|ref|YP_004037335.1| - 0.12 10.9 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|313127065|ref|YP_004037335.1| - 0.13 12.4 0.0 0.43 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|313127065|ref|YP_004037335.1| - 0.14 11.2 0.2 1.4 8.0 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC2_membrane_2 PF12679.2 gi|313127066|ref|YP_004037336.1| - 4.5e-08 32.2 21.4 8.5e-08 31.3 14.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|313127066|ref|YP_004037336.1| - 0.019 14.1 12.7 0.04 13.0 8.8 1.5 1 0 0 1 1 1 0 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|313127066|ref|YP_004037336.1| - 0.026 13.5 15.1 0.036 13.1 10.5 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein FAD_binding_6 PF00970.19 gi|313127067|ref|YP_004037337.1| - 2.7e-13 49.8 0.0 3.7e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_9 PF08021.6 gi|313127067|ref|YP_004037337.1| - 0.039 13.9 0.0 0.2 11.6 0.0 2.0 1 1 0 1 1 1 0 Siderophore-interacting FAD-binding domain POR_N PF01855.14 gi|313127068|ref|YP_004037338.1| - 3.2e-60 203.5 0.4 5.1e-60 202.8 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|313127068|ref|YP_004037338.1| - 1.4e-40 138.9 0.1 3e-40 137.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|313127068|ref|YP_004037338.1| - 7.5e-06 25.5 0.3 1.3e-05 24.7 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MsyB PF13984.1 gi|313127068|ref|YP_004037338.1| - 0.021 14.8 1.3 0.064 13.3 0.1 2.2 2 0 0 2 2 2 0 MsyB protein Transketolase_C PF02780.15 gi|313127068|ref|YP_004037338.1| - 0.026 14.4 0.0 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|313127069|ref|YP_004037339.1| - 2.7e-32 111.4 0.7 4.1e-32 110.8 0.5 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|313127069|ref|YP_004037339.1| - 7.5e-15 54.6 0.1 1.8e-14 53.3 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal COX5B PF01215.14 gi|313127070|ref|YP_004037340.1| - 0.016 14.8 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Vb TFIIS_C PF01096.13 gi|313127070|ref|YP_004037340.1| - 0.044 13.4 0.5 6.4 6.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Elf1 PF05129.8 gi|313127070|ref|YP_004037340.1| - 0.046 13.4 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|313127070|ref|YP_004037340.1| - 0.1 12.5 2.4 0.4 10.6 1.8 1.8 1 1 1 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|313127070|ref|YP_004037340.1| - 1.2 8.6 3.5 6.9 6.2 2.4 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Trp_halogenase PF04820.9 gi|313127071|ref|YP_004037341.1| - 1e-12 47.4 1.1 2.8e-08 32.8 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|313127071|ref|YP_004037341.1| - 7.9e-11 41.4 4.1 2.1e-05 23.6 0.8 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|313127071|ref|YP_004037341.1| - 8.3e-10 38.3 7.2 2.9e-09 36.5 5.0 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313127071|ref|YP_004037341.1| - 1.3e-09 37.4 6.9 1.2e-05 24.3 2.2 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.14 gi|313127071|ref|YP_004037341.1| - 2.7e-07 29.9 6.3 5e-06 25.8 4.4 2.5 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|313127071|ref|YP_004037341.1| - 3.7e-07 29.3 0.0 4.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|313127071|ref|YP_004037341.1| - 2.4e-06 26.3 1.1 2e-05 23.2 0.4 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|313127071|ref|YP_004037341.1| - 2e-05 24.9 2.5 0.037 14.4 0.4 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313127071|ref|YP_004037341.1| - 6.8e-05 22.8 1.1 0.00034 20.5 0.2 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|313127071|ref|YP_004037341.1| - 0.00017 21.5 0.6 0.00031 20.7 0.4 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|313127071|ref|YP_004037341.1| - 0.00032 19.7 2.2 0.0025 16.7 1.5 2.1 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|313127071|ref|YP_004037341.1| - 0.0046 17.0 0.0 0.0083 16.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313127071|ref|YP_004037341.1| - 0.0063 15.6 0.3 0.0063 15.6 0.2 1.8 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|313127071|ref|YP_004037341.1| - 0.008 15.8 0.1 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|313127071|ref|YP_004037341.1| - 0.014 14.9 0.1 0.028 13.9 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|313127071|ref|YP_004037341.1| - 0.063 13.2 0.4 0.17 11.9 0.1 1.9 2 0 0 2 2 2 0 NADH(P)-binding GMC_oxred_N PF00732.14 gi|313127071|ref|YP_004037341.1| - 0.086 11.9 0.0 5.2 6.1 0.0 2.3 2 0 0 2 2 2 0 GMC oxidoreductase Aldo_ket_red PF00248.16 gi|313127072|ref|YP_004037342.1| - 4.6e-69 232.3 0.0 5.4e-69 232.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_28 PF13518.1 gi|313127072|ref|YP_004037342.1| - 0.022 14.7 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|313127072|ref|YP_004037342.1| - 0.13 12.2 0.1 67 3.5 0.0 3.4 4 0 0 4 4 4 0 Transposase DUF308 PF03729.8 gi|313127073|ref|YP_004037343.1| - 0.002 18.0 1.4 0.0028 17.5 0.9 1.3 1 1 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF872 PF05915.7 gi|313127073|ref|YP_004037343.1| - 0.24 11.2 1.1 0.26 11.1 0.8 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF1469 PF07332.6 gi|313127073|ref|YP_004037343.1| - 0.55 9.9 5.0 0.67 9.6 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF373 PF04123.8 gi|313127074|ref|YP_004037344.1| - 5.4e-112 374.2 4.6 6.2e-112 374.0 3.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Peptidase_S49 PF01343.13 gi|313127075|ref|YP_004037345.1| - 1.7e-44 151.3 0.0 2.5e-44 150.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.11 gi|313127075|ref|YP_004037345.1| - 7.6e-05 21.6 0.0 0.00012 21.0 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|313127075|ref|YP_004037345.1| - 0.045 13.4 0.0 0.32 10.6 0.0 2.0 2 0 0 2 2 2 0 Clp protease TniQ PF06527.6 gi|313127075|ref|YP_004037345.1| - 0.14 12.3 0.1 1.5 9.0 0.0 2.3 1 1 1 2 2 2 0 TniQ Laminin_II PF06009.7 gi|313127076|ref|YP_004037346.1| - 1.3 8.7 32.8 0.054 13.2 7.4 3.5 1 1 3 4 4 4 0 Laminin Domain II DUF948 PF06103.6 gi|313127076|ref|YP_004037346.1| - 1.8 8.4 18.6 3.4 7.5 1.5 3.8 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|313127076|ref|YP_004037346.1| - 4.7 6.3 6.5 12 5.0 0.5 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein DUF371 PF04027.8 gi|313127077|ref|YP_004037347.1| - 1.2e-49 167.3 0.1 1.3e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) HhH-GPD PF00730.20 gi|313127078|ref|YP_004037348.1| - 5.2e-17 62.1 0.0 7.6e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|313127078|ref|YP_004037348.1| - 2.6e-05 24.1 6.5 5.7e-05 23.1 4.5 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|313127078|ref|YP_004037348.1| - 0.00058 19.4 0.0 0.0016 18.0 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif PRiA4_ORF3 PF07929.6 gi|313127078|ref|YP_004037348.1| - 0.047 13.1 0.3 0.67 9.3 0.1 2.4 2 0 0 2 2 2 0 Plasmid pRiA4b ORF-3-like protein DUF2400 PF09674.5 gi|313127078|ref|YP_004037348.1| - 0.065 12.9 0.0 0.14 11.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) HHH_5 PF14520.1 gi|313127078|ref|YP_004037348.1| - 0.086 13.0 0.2 0.33 11.1 0.1 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain PAS_3 PF08447.6 gi|313127079|ref|YP_004037349.1| - 6.5e-45 151.1 0.1 9.7e-17 60.8 0.0 4.4 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|313127079|ref|YP_004037349.1| - 1e-37 128.6 0.5 3.5e-13 49.8 0.0 4.6 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|313127079|ref|YP_004037349.1| - 2.5e-35 120.6 1.1 2.5e-15 56.2 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|313127079|ref|YP_004037349.1| - 2.2e-30 104.8 6.9 2.5e-10 40.3 0.0 4.7 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|313127079|ref|YP_004037349.1| - 1.2e-17 63.6 0.9 7.5e-17 61.0 0.1 2.6 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|313127079|ref|YP_004037349.1| - 2.8e-15 55.5 0.0 5e-06 26.1 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|313127079|ref|YP_004037349.1| - 6.7e-12 45.2 0.3 1.9e-11 43.8 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|313127079|ref|YP_004037349.1| - 7.7e-07 29.0 0.0 0.064 13.2 0.0 4.1 4 0 0 4 4 4 2 PAS domain CopD PF05425.8 gi|313127080|ref|YP_004037350.1| - 0.022 14.9 0.1 0.039 14.1 0.1 1.4 1 0 0 1 1 1 0 Copper resistance protein D MGS PF02142.17 gi|313127081|ref|YP_004037351.1| - 9.7e-14 51.0 0.0 1.2e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain Beta-Casp PF10996.3 gi|313127082|ref|YP_004037352.1| - 8.6e-33 112.9 0.0 1.7e-32 112.0 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|313127082|ref|YP_004037352.1| - 2.7e-22 79.3 2.8 5.2e-22 78.4 1.9 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|313127082|ref|YP_004037352.1| - 4.4e-14 52.0 0.0 1.3e-13 50.4 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|313127082|ref|YP_004037352.1| - 1.2e-10 41.3 0.4 2.6e-10 40.1 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|313127082|ref|YP_004037352.1| - 2.4e-09 36.6 0.1 3.4e-07 29.7 0.0 2.7 2 1 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|313127082|ref|YP_004037352.1| - 0.00011 22.0 0.0 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|313127082|ref|YP_004037352.1| - 0.00013 21.5 0.1 0.00051 19.6 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|313127082|ref|YP_004037352.1| - 0.016 14.8 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|313127082|ref|YP_004037352.1| - 0.055 13.1 0.2 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 KH domain DHquinase_II PF01220.14 gi|313127082|ref|YP_004037352.1| - 0.13 11.5 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 Dehydroquinase class II DUF1155 PF06633.6 gi|313127083|ref|YP_004037353.1| - 0.0037 16.5 0.1 0.0065 15.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1155) PgpA PF04608.8 gi|313127083|ref|YP_004037353.1| - 0.2 11.4 1.2 0.5 10.1 0.9 1.8 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A HGTP_anticodon PF03129.15 gi|313127085|ref|YP_004037355.1| - 2.8e-23 81.6 0.4 2.8e-23 81.6 0.3 1.7 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|313127085|ref|YP_004037355.1| - 1.2e-19 69.9 0.1 3.5e-19 68.4 0.1 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|313127085|ref|YP_004037355.1| - 1.3e-16 60.6 0.0 2.8e-16 59.5 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Glu_synthase PF01645.12 gi|313127086|ref|YP_004037356.1| - 2.3e-153 510.4 0.2 2.5e-152 507.0 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|313127086|ref|YP_004037356.1| - 3e-121 404.5 0.0 8.1e-121 403.1 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|313127086|ref|YP_004037356.1| - 3e-111 371.3 0.0 4.7e-111 370.6 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|313127086|ref|YP_004037356.1| - 7.8e-60 201.3 9.3 1.3e-59 200.5 6.5 1.3 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.10 gi|313127086|ref|YP_004037356.1| - 0.00054 19.2 0.7 0.0013 17.9 0.5 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|313127086|ref|YP_004037356.1| - 0.0025 16.7 12.7 0.0097 14.7 1.3 3.3 3 1 0 3 3 3 2 FMN-dependent dehydrogenase GATase_6 PF13522.1 gi|313127086|ref|YP_004037356.1| - 0.02 14.8 0.5 0.64 9.9 0.0 3.5 3 0 0 3 3 3 0 Glutamine amidotransferase domain Epimerase PF01370.16 gi|313127087|ref|YP_004037357.1| - 2.2e-30 105.8 0.5 1.5e-28 99.8 0.4 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313127087|ref|YP_004037357.1| - 4.7e-09 36.5 0.1 7.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|313127087|ref|YP_004037357.1| - 1e-06 27.7 0.0 0.0058 15.3 0.0 2.2 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313127087|ref|YP_004037357.1| - 3e-05 23.0 0.0 0.19 10.6 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|313127087|ref|YP_004037357.1| - 0.0013 17.6 0.0 0.13 11.1 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|313127087|ref|YP_004037357.1| - 0.0076 16.1 0.1 0.021 14.7 0.0 1.7 1 1 1 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|313127087|ref|YP_004037357.1| - 0.15 11.3 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family HD PF01966.17 gi|313127088|ref|YP_004037358.1| - 1.7e-16 60.3 0.6 1.7e-16 60.3 0.4 1.6 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|313127088|ref|YP_004037358.1| - 0.02 14.6 0.2 0.04 13.6 0.1 1.4 1 0 0 1 1 1 0 HD domain DUF3179 PF11376.3 gi|313127089|ref|YP_004037359.1| - 6e-52 176.4 0.0 2e-51 174.6 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3179) Fe_dep_repress PF01325.14 gi|313127090|ref|YP_004037360.1| - 7.4e-17 61.0 0.2 1.7e-16 59.8 0.0 1.7 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|313127090|ref|YP_004037360.1| - 1.2e-10 40.8 0.0 2.5e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|313127090|ref|YP_004037360.1| - 2.5e-06 27.7 0.0 4.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313127090|ref|YP_004037360.1| - 7.8e-05 22.2 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313127090|ref|YP_004037360.1| - 0.00053 19.6 0.0 0.0022 17.6 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313127090|ref|YP_004037360.1| - 0.00079 18.7 0.0 0.007 15.7 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|313127090|ref|YP_004037360.1| - 0.00079 19.1 0.0 0.0024 17.6 0.0 1.8 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|313127090|ref|YP_004037360.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313127090|ref|YP_004037360.1| - 0.008 15.9 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|313127090|ref|YP_004037360.1| - 0.02 14.4 0.0 0.032 13.7 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.16 gi|313127090|ref|YP_004037360.1| - 0.069 12.5 0.0 0.22 11.0 0.0 1.8 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|313127090|ref|YP_004037360.1| - 0.092 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|313127090|ref|YP_004037360.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Rubrerythrin PF02915.12 gi|313127091|ref|YP_004037361.1| - 4.3e-07 30.3 5.5 6.3e-07 29.8 3.7 1.3 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|313127091|ref|YP_004037361.1| - 0.00022 21.2 2.6 0.15 12.0 0.4 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF445 PF04286.7 gi|313127091|ref|YP_004037361.1| - 0.018 14.5 0.4 0.024 14.1 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF342 PF03961.8 gi|313127091|ref|YP_004037361.1| - 0.032 12.6 0.5 2.3 6.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Pex19 PF04614.7 gi|313127091|ref|YP_004037361.1| - 0.078 12.5 0.3 0.11 12.0 0.2 1.2 1 0 0 1 1 1 0 Pex19 protein family DUF892 PF05974.7 gi|313127091|ref|YP_004037361.1| - 0.079 12.7 4.5 0.22 11.2 1.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF892) MiaE_2 PF13794.1 gi|313127091|ref|YP_004037361.1| - 0.08 12.4 1.1 0.29 10.5 0.8 1.8 1 1 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like PspB PF06667.7 gi|313127091|ref|YP_004037361.1| - 0.081 12.8 1.7 0.17 11.8 1.2 1.6 1 0 0 1 1 1 0 Phage shock protein B DUF4226 PF10774.4 gi|313127091|ref|YP_004037361.1| - 0.15 12.0 1.2 0.36 10.8 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Nup54 PF13874.1 gi|313127091|ref|YP_004037361.1| - 0.39 10.3 2.8 2.2 7.9 0.7 2.2 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 PP2C_C PF07830.8 gi|313127091|ref|YP_004037361.1| - 0.77 9.9 4.0 0.88 9.7 1.3 2.1 2 1 1 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain Ferritin PF00210.19 gi|313127091|ref|YP_004037361.1| - 0.98 9.1 9.6 3 7.5 6.6 1.8 1 1 0 1 1 1 0 Ferritin-like domain APG6 PF04111.7 gi|313127091|ref|YP_004037361.1| - 1 8.3 6.6 0.18 10.8 1.8 1.6 2 0 0 2 2 2 0 Autophagy protein Apg6 IncA PF04156.9 gi|313127091|ref|YP_004037361.1| - 1.5 8.3 5.3 0.76 9.3 2.3 1.5 2 0 0 2 2 2 0 IncA protein DUF3647 PF12363.3 gi|313127091|ref|YP_004037361.1| - 2.8 8.0 5.2 5.8 7.0 1.9 2.4 1 1 1 2 2 2 0 Phage protein UPF0051 PF01458.12 gi|313127092|ref|YP_004037362.1| - 1.3e-64 217.8 0.8 1.6e-64 217.5 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|313127093|ref|YP_004037363.1| - 1e-70 237.7 0.7 1.5e-70 237.2 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|313127094|ref|YP_004037364.1| - 2e-15 57.2 0.0 8.1e-15 55.3 0.0 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|313127094|ref|YP_004037364.1| - 3.5e-06 26.3 0.8 0.016 14.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|313127094|ref|YP_004037364.1| - 1.3e-05 25.3 0.2 0.00047 20.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313127094|ref|YP_004037364.1| - 0.00018 21.7 0.1 0.15 12.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|313127094|ref|YP_004037364.1| - 0.00038 21.2 1.3 0.0023 18.7 0.1 2.4 2 2 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|313127094|ref|YP_004037364.1| - 0.00049 20.4 1.1 0.051 13.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313127094|ref|YP_004037364.1| - 0.0015 18.0 0.1 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|313127094|ref|YP_004037364.1| - 0.0015 18.2 0.1 1.3 8.7 0.0 2.7 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|313127094|ref|YP_004037364.1| - 0.0069 16.5 0.1 0.39 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|313127094|ref|YP_004037364.1| - 0.018 14.9 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|313127094|ref|YP_004037364.1| - 0.034 14.1 0.0 0.57 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313127094|ref|YP_004037364.1| - 0.037 13.4 0.0 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|313127094|ref|YP_004037364.1| - 0.063 13.5 0.9 0.15 12.4 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|313127094|ref|YP_004037364.1| - 0.064 11.7 0.3 0.13 10.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|313127094|ref|YP_004037364.1| - 0.065 12.6 0.0 1.1 8.6 0.0 2.0 2 0 0 2 2 2 0 MutS domain V AAA_10 PF12846.2 gi|313127094|ref|YP_004037364.1| - 0.44 9.9 3.5 1.6 8.0 2.3 1.8 1 1 0 1 1 1 0 AAA-like domain DNA_pol_B PF00136.16 gi|313127095|ref|YP_004037365.1| - 5.8e-62 209.9 0.0 9.1e-62 209.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|313127095|ref|YP_004037365.1| - 7.3e-37 126.9 0.0 1.6e-36 125.7 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain MarR_2 PF12802.2 gi|313127098|ref|YP_004037368.1| - 0.11 12.2 0.2 0.26 10.9 0.2 1.7 1 0 0 1 1 1 0 MarR family AAA_23 PF13476.1 gi|313127099|ref|YP_004037369.1| - 2.6e-19 70.3 20.0 2.6e-19 70.3 13.8 5.8 2 2 0 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|313127099|ref|YP_004037369.1| - 2.9e-13 50.4 2.2 3.1e-08 33.9 0.1 2.7 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.1 gi|313127099|ref|YP_004037369.1| - 2.3e-12 46.2 51.8 2.2e-05 23.1 12.1 4.7 2 1 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|313127099|ref|YP_004037369.1| - 5.9e-11 42.0 47.7 6.7e-10 38.5 33.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF3584 PF12128.3 gi|313127099|ref|YP_004037369.1| - 9.5e-09 33.2 91.3 4.1e-05 21.1 25.5 3.6 3 1 0 3 3 3 3 Protein of unknown function (DUF3584) AAA_15 PF13175.1 gi|313127099|ref|YP_004037369.1| - 1.3e-08 34.3 0.6 0.00022 20.3 0.0 3.7 3 1 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|313127099|ref|YP_004037369.1| - 6.4e-06 25.5 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|313127099|ref|YP_004037369.1| - 4.7e-05 23.0 107.8 0.043 13.4 12.7 5.5 2 2 3 5 5 5 3 IncA protein Reo_sigmaC PF04582.7 gi|313127099|ref|YP_004037369.1| - 0.00034 19.8 26.9 0.074 12.2 1.0 4.5 2 2 2 4 4 4 2 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|313127099|ref|YP_004037369.1| - 0.00045 18.0 11.6 0.00045 18.0 8.0 5.1 2 1 2 4 4 4 1 AAA domain NPV_P10 PF05531.7 gi|313127099|ref|YP_004037369.1| - 0.00053 20.1 22.6 0.27 11.5 0.1 8.5 4 2 2 6 6 6 1 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|313127099|ref|YP_004037369.1| - 0.0017 17.3 77.8 0.0043 16.0 6.9 5.4 2 2 3 5 5 5 2 UV radiation resistance protein and autophagy-related subunit 14 CENP-F_leu_zip PF10473.4 gi|313127099|ref|YP_004037369.1| - 0.0022 17.8 112.4 0.19 11.5 8.0 7.4 2 2 4 6 6 6 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nup54 PF13874.1 gi|313127099|ref|YP_004037369.1| - 0.003 17.2 12.2 0.003 17.2 8.5 6.4 3 2 3 6 6 5 1 Nucleoporin complex subunit 54 Snapin_Pallidin PF14712.1 gi|313127099|ref|YP_004037369.1| - 0.0069 16.6 33.5 1.1 9.6 0.2 7.6 4 3 4 8 8 8 3 Snapin/Pallidin STAT_alpha PF01017.15 gi|313127099|ref|YP_004037369.1| - 0.0084 15.8 2.1 0.0084 15.8 1.4 5.0 3 1 2 5 5 5 2 STAT protein, all-alpha domain CBS PF00571.23 gi|313127099|ref|YP_004037369.1| - 0.038 13.7 1.8 0.17 11.6 0.1 2.8 2 0 0 2 2 2 0 CBS domain Baculo_PEP_C PF04513.7 gi|313127099|ref|YP_004037369.1| - 0.19 11.5 21.5 4.2 7.1 0.1 6.4 2 2 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus WEMBL PF05701.6 gi|313127099|ref|YP_004037369.1| - 0.22 9.9 107.9 0.081 11.3 33.6 3.5 2 2 1 3 3 3 0 Weak chloroplast movement under blue light DUF4201 PF13870.1 gi|313127099|ref|YP_004037369.1| - 0.23 10.8 76.9 1.1 8.6 5.6 7.7 1 1 6 7 7 7 0 Domain of unknown function (DUF4201) ABC_tran PF00005.22 gi|313127099|ref|YP_004037369.1| - 0.27 11.5 0.0 0.27 11.5 0.0 5.4 2 1 0 2 2 1 0 ABC transporter zinc_ribbon_2 PF13240.1 gi|313127099|ref|YP_004037369.1| - 0.34 10.4 0.8 0.61 9.6 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain AAA_33 PF13671.1 gi|313127099|ref|YP_004037369.1| - 0.44 10.4 0.0 0.44 10.4 0.0 4.2 3 1 1 4 4 3 0 AAA domain DUF948 PF06103.6 gi|313127099|ref|YP_004037369.1| - 0.65 9.8 19.1 2.6 7.9 0.2 6.3 4 3 3 7 7 7 0 Bacterial protein of unknown function (DUF948) Filament PF00038.16 gi|313127099|ref|YP_004037369.1| - 0.78 9.1 98.5 0.53 9.7 9.8 6.2 2 2 0 2 2 2 0 Intermediate filament protein Laminin_II PF06009.7 gi|313127099|ref|YP_004037369.1| - 0.93 9.2 48.8 0.17 11.6 3.9 6.6 2 1 3 6 6 6 0 Laminin Domain II DUF342 PF03961.8 gi|313127099|ref|YP_004037369.1| - 2.5 6.4 57.5 0.42 8.9 4.7 5.5 1 1 5 6 6 6 0 Protein of unknown function (DUF342) Metallophos_2 PF12850.2 gi|313127100|ref|YP_004037370.1| - 3.8e-14 52.7 0.7 9.6e-14 51.5 0.5 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313127100|ref|YP_004037370.1| - 7.9e-11 41.7 2.0 1.2e-10 41.0 1.4 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Lip_A_acyltrans PF03279.8 gi|313127100|ref|YP_004037370.1| - 0.21 10.4 0.0 0.34 9.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase KfrA_N PF11740.3 gi|313127101|ref|YP_004037371.1| - 0.39 11.1 11.4 30 5.0 7.8 2.0 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_24 PF13412.1 gi|313127102|ref|YP_004037372.1| - 5.3e-06 25.7 0.0 8.5e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313127102|ref|YP_004037372.1| - 0.00011 21.8 0.1 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313127102|ref|YP_004037372.1| - 0.00021 21.0 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|313127102|ref|YP_004037372.1| - 0.00083 18.7 0.1 0.0012 18.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|313127102|ref|YP_004037372.1| - 0.0028 17.3 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|313127102|ref|YP_004037372.1| - 0.0097 15.3 0.0 0.012 15.1 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|313127102|ref|YP_004037372.1| - 0.011 16.0 0.0 0.016 15.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|313127102|ref|YP_004037372.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|313127102|ref|YP_004037372.1| - 0.02 15.0 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|313127102|ref|YP_004037372.1| - 0.021 14.2 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TrmB PF01978.14 gi|313127102|ref|YP_004037372.1| - 0.022 14.4 0.1 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313127102|ref|YP_004037372.1| - 0.033 13.8 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Mga PF08280.6 gi|313127102|ref|YP_004037372.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.1 gi|313127102|ref|YP_004037372.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain AAA PF00004.24 gi|313127103|ref|YP_004037373.1| - 5.6e-46 156.0 2.1 6.8e-46 155.7 0.0 2.1 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|313127103|ref|YP_004037373.1| - 2.4e-09 37.3 0.0 9.3e-09 35.4 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|313127103|ref|YP_004037373.1| - 8.5e-08 32.0 0.3 8.1e-07 28.8 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|313127103|ref|YP_004037373.1| - 7e-07 28.5 0.0 1.5e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|313127103|ref|YP_004037373.1| - 2.5e-06 27.6 3.7 4e-05 23.7 0.2 3.0 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313127103|ref|YP_004037373.1| - 2.6e-06 27.5 4.5 3.8e-05 23.7 0.0 3.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|313127103|ref|YP_004037373.1| - 3.1e-06 28.0 1.2 1.9e-05 25.4 0.0 2.6 3 1 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|313127103|ref|YP_004037373.1| - 6.4e-05 22.8 0.3 0.00067 19.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|313127103|ref|YP_004037373.1| - 9.6e-05 21.4 0.0 0.00021 20.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|313127103|ref|YP_004037373.1| - 0.00056 19.1 0.2 0.0029 16.7 0.1 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|313127103|ref|YP_004037373.1| - 0.00058 19.5 0.1 0.035 13.7 0.0 2.5 1 1 1 2 2 2 1 NACHT domain TIP49 PF06068.8 gi|313127103|ref|YP_004037373.1| - 0.00066 18.5 0.5 0.0026 16.5 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|313127103|ref|YP_004037373.1| - 0.00083 18.8 0.0 0.0021 17.4 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|313127103|ref|YP_004037373.1| - 0.00083 19.0 0.1 0.003 17.2 0.1 1.9 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|313127103|ref|YP_004037373.1| - 0.00096 18.6 0.1 0.023 14.1 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_24 PF13479.1 gi|313127103|ref|YP_004037373.1| - 0.00099 18.7 0.5 0.0071 15.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|313127103|ref|YP_004037373.1| - 0.0017 18.3 0.0 0.0068 16.3 0.0 2.2 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|313127103|ref|YP_004037373.1| - 0.0027 17.7 0.1 0.019 15.0 0.0 2.5 3 1 0 3 3 1 1 Sigma-54 interaction domain GrpE PF01025.14 gi|313127103|ref|YP_004037373.1| - 0.0029 17.1 7.2 0.0029 17.1 5.0 1.8 2 0 0 2 2 1 1 GrpE RNA_helicase PF00910.17 gi|313127103|ref|YP_004037373.1| - 0.0034 17.5 0.0 0.0094 16.1 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.1 gi|313127103|ref|YP_004037373.1| - 0.0037 17.1 0.0 0.01 15.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|313127103|ref|YP_004037373.1| - 0.0039 16.3 0.3 0.012 14.7 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_3 PF07726.6 gi|313127103|ref|YP_004037373.1| - 0.0044 16.6 0.7 0.052 13.1 0.0 2.9 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|313127103|ref|YP_004037373.1| - 0.0049 17.1 3.2 0.012 15.9 0.0 2.6 2 2 0 2 2 2 1 AAA domain ATG16 PF08614.6 gi|313127103|ref|YP_004037373.1| - 0.005 16.6 9.7 0.005 16.6 6.7 2.5 2 1 0 2 2 2 1 Autophagy protein 16 (ATG16) AAA_11 PF13086.1 gi|313127103|ref|YP_004037373.1| - 0.0055 16.3 0.7 0.26 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|313127103|ref|YP_004037373.1| - 0.0095 15.0 4.9 0.17 10.9 0.0 3.2 2 1 1 3 3 3 1 KaiC Arch_ATPase PF01637.13 gi|313127103|ref|YP_004037373.1| - 0.012 15.3 2.5 0.1 12.2 0.0 2.8 2 1 0 2 2 2 0 Archaeal ATPase Kinetocho_Slk19 PF12709.2 gi|313127103|ref|YP_004037373.1| - 0.012 15.6 3.1 0.047 13.7 2.1 1.9 1 0 0 1 1 1 0 Central kinetochore-associated Creatininase PF02633.9 gi|313127103|ref|YP_004037373.1| - 0.015 14.3 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase ADIP PF11559.3 gi|313127103|ref|YP_004037373.1| - 0.017 15.0 6.5 0.043 13.7 4.5 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AAA_25 PF13481.1 gi|313127103|ref|YP_004037373.1| - 0.023 14.0 10.5 0.044 13.1 0.1 3.4 3 1 1 4 4 4 0 AAA domain Parvo_NS1 PF01057.12 gi|313127103|ref|YP_004037373.1| - 0.025 13.4 0.0 0.049 12.4 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 bZIP_1 PF00170.16 gi|313127103|ref|YP_004037373.1| - 0.027 14.4 11.6 0.26 11.2 2.8 2.8 1 1 1 2 2 2 0 bZIP transcription factor NTPase_1 PF03266.10 gi|313127103|ref|YP_004037373.1| - 0.035 13.8 4.8 0.81 9.3 0.0 3.5 2 2 2 4 4 4 0 NTPase NB-ARC PF00931.17 gi|313127103|ref|YP_004037373.1| - 0.1 11.4 0.0 0.1 11.4 0.0 2.3 3 0 0 3 3 2 0 NB-ARC domain ABC_tran PF00005.22 gi|313127103|ref|YP_004037373.1| - 0.29 11.4 0.0 0.29 11.4 0.0 2.6 2 1 0 2 2 1 0 ABC transporter IncA PF04156.9 gi|313127103|ref|YP_004037373.1| - 0.33 10.5 15.9 1.5 8.4 9.7 2.2 1 1 1 2 2 2 0 IncA protein Fmp27_WPPW PF10359.4 gi|313127103|ref|YP_004037373.1| - 0.7 8.2 7.4 1.1 7.5 5.1 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain KAP_NTPase PF07693.9 gi|313127103|ref|YP_004037373.1| - 1.1 8.2 4.4 2.1 7.2 0.1 2.6 2 1 0 2 2 2 0 KAP family P-loop domain ERM PF00769.14 gi|313127103|ref|YP_004037373.1| - 1.1 8.7 14.3 0.72 9.3 8.5 1.7 2 0 0 2 2 1 0 Ezrin/radixin/moesin family AAA_10 PF12846.2 gi|313127103|ref|YP_004037373.1| - 1.3 8.4 4.6 2.3 7.5 0.0 2.9 3 1 0 3 3 3 0 AAA-like domain Macoilin PF09726.4 gi|313127103|ref|YP_004037373.1| - 1.4 7.0 6.3 2 6.6 4.3 1.2 1 0 0 1 1 1 0 Transmembrane protein Viral_P18 PF04521.8 gi|313127103|ref|YP_004037373.1| - 1.5 8.2 4.3 3.6 7.0 3.0 1.6 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein DUF3987 PF13148.1 gi|313127103|ref|YP_004037373.1| - 2.6 6.5 7.5 3.5 6.0 3.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_23 PF13476.1 gi|313127103|ref|YP_004037373.1| - 4 7.6 0.0 4 7.6 0.0 2.5 2 1 0 2 2 1 0 AAA domain Cep57_CLD_2 PF14197.1 gi|313127103|ref|YP_004037373.1| - 4.4 7.3 17.3 0.54 10.2 7.4 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 AAA_13 PF13166.1 gi|313127103|ref|YP_004037373.1| - 8.2 4.7 12.6 27 3.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain HhH-GPD PF00730.20 gi|313127105|ref|YP_004037375.1| - 2.5e-22 79.2 0.0 3.9e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|313127105|ref|YP_004037375.1| - 3.4e-09 35.8 0.1 2.6e-08 33.1 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|313127105|ref|YP_004037375.1| - 0.00011 22.2 3.6 0.00018 21.5 2.5 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|313127105|ref|YP_004037375.1| - 0.00024 21.2 0.0 0.39 10.9 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain PqqD PF05402.7 gi|313127105|ref|YP_004037375.1| - 0.0038 17.2 5.0 0.089 12.8 0.4 3.1 4 0 0 4 4 4 2 Coenzyme PQQ synthesis protein D (PqqD) DUF3349 PF11829.3 gi|313127105|ref|YP_004037375.1| - 0.037 14.4 0.1 0.068 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) Cytochrom_B561 PF03188.11 gi|313127106|ref|YP_004037376.1| - 0.085 12.6 1.9 0.15 11.9 0.2 1.9 2 0 0 2 2 2 0 Eukaryotic cytochrome b561 Fig1 PF12351.3 gi|313127107|ref|YP_004037377.1| - 0.12 12.2 0.3 0.17 11.7 0.2 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Copper-bind PF00127.15 gi|313127108|ref|YP_004037378.1| - 2.4e-14 53.3 0.1 4.4e-14 52.5 0.1 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF1673 PF07895.6 gi|313127109|ref|YP_004037379.1| - 0.016 14.7 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF3087 PF11286.3 gi|313127109|ref|YP_004037379.1| - 0.15 11.2 0.1 0.18 11.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) Vma12 PF11712.3 gi|313127109|ref|YP_004037379.1| - 0.2 11.3 0.8 0.26 10.9 0.5 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Cytochrom_B_N_2 PF13631.1 gi|313127110|ref|YP_004037380.1| - 1.1e-41 142.3 15.0 2.5e-41 141.2 8.7 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|313127110|ref|YP_004037380.1| - 1.7e-11 43.8 17.3 2.4e-11 43.3 12.0 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|313127110|ref|YP_004037380.1| - 0.053 13.9 0.1 0.053 13.9 0.0 4.1 4 1 0 4 4 4 0 PepSY-associated TM helix DUF3267 PF11667.3 gi|313127110|ref|YP_004037380.1| - 0.057 13.6 0.5 0.057 13.6 0.3 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3267) Cytochrom_B_C PF00032.12 gi|313127111|ref|YP_004037381.1| - 2.5e-07 30.8 0.1 5.8e-07 29.6 0.0 1.7 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD COPI_assoc PF08507.5 gi|313127112|ref|YP_004037382.1| - 0.38 10.4 3.4 1.8 8.2 0.0 2.0 1 1 1 2 2 2 0 COPI associated protein SPC12 PF06645.8 gi|313127112|ref|YP_004037382.1| - 7.5 6.4 6.4 4.2 7.2 1.5 2.1 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Oxidored_q3 PF00499.15 gi|313127113|ref|YP_004037383.1| - 0.081 12.7 0.7 0.096 12.4 0.5 1.0 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PDR_assoc PF08370.6 gi|313127113|ref|YP_004037383.1| - 1.1 8.8 4.2 0.74 9.3 1.7 1.7 1 1 1 2 2 2 0 Plant PDR ABC transporter associated DUF3592 PF12158.3 gi|313127113|ref|YP_004037383.1| - 6.2 6.6 6.0 8.7 6.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3592) TctB PF07331.6 gi|313127114|ref|YP_004037384.1| - 0.0057 16.3 1.2 0.0083 15.7 0.8 1.3 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family SirB PF04247.7 gi|313127114|ref|YP_004037384.1| - 0.077 12.7 0.4 0.077 12.7 0.3 1.8 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB TPPK_C PF12555.3 gi|313127114|ref|YP_004037384.1| - 0.14 11.9 0.6 0.14 11.9 0.4 1.9 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal NAD_kinase PF01513.16 gi|313127115|ref|YP_004037385.1| - 1.4e-15 56.8 0.0 1.9e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Peptidase_M28 PF04389.12 gi|313127116|ref|YP_004037386.1| - 6e-26 91.2 0.1 1e-25 90.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|313127116|ref|YP_004037386.1| - 2e-09 37.0 0.0 3.5e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|313127116|ref|YP_004037386.1| - 3e-06 26.8 0.2 6.4e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|313127116|ref|YP_004037386.1| - 0.0023 16.7 0.1 0.0039 15.9 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Thiolase_N PF00108.18 gi|313127117|ref|YP_004037387.1| - 2.4e-11 43.1 0.8 1.6e-09 37.1 0.1 2.2 1 1 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|313127117|ref|YP_004037387.1| - 4.9e-09 35.6 0.2 1e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|313127117|ref|YP_004037387.1| - 3.7e-08 33.1 1.4 3.7e-08 33.1 1.0 2.8 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|313127117|ref|YP_004037387.1| - 0.0026 17.5 1.8 0.041 13.7 1.2 2.5 1 1 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|313127118|ref|YP_004037388.1| - 3.1e-11 43.3 0.4 4.2e-11 42.9 0.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|313127118|ref|YP_004037388.1| - 0.00072 19.3 1.1 0.0011 18.7 0.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|313127118|ref|YP_004037388.1| - 0.013 14.7 0.1 0.025 13.8 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|313127118|ref|YP_004037388.1| - 0.07 12.6 0.2 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Abhydrolase_6 PF12697.2 gi|313127119|ref|YP_004037389.1| - 2e-30 106.3 0.8 2.5e-30 106.0 0.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313127119|ref|YP_004037389.1| - 7e-10 38.8 0.0 4.4e-09 36.2 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313127119|ref|YP_004037389.1| - 0.00076 19.1 0.1 0.27 10.7 0.0 2.2 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|313127119|ref|YP_004037389.1| - 0.0022 17.7 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative lysophospholipase ArgK PF03308.11 gi|313127120|ref|YP_004037390.1| - 4.8e-96 320.6 3.7 5.9e-96 320.3 2.6 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|313127120|ref|YP_004037390.1| - 9e-08 31.7 2.7 7e-07 28.8 1.9 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|313127120|ref|YP_004037390.1| - 3.9e-06 27.6 0.6 2e-05 25.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313127120|ref|YP_004037390.1| - 2.1e-05 24.6 0.4 0.0002 21.4 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|313127120|ref|YP_004037390.1| - 5.1e-05 22.9 0.3 0.00069 19.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|313127120|ref|YP_004037390.1| - 6.2e-05 22.7 0.1 0.00016 21.3 0.0 1.7 1 0 0 1 1 1 1 NTPase CbiA PF01656.18 gi|313127120|ref|YP_004037390.1| - 8.2e-05 22.0 0.7 0.00015 21.2 0.3 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|313127120|ref|YP_004037390.1| - 0.0001 21.8 0.4 0.0003 20.2 0.3 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|313127120|ref|YP_004037390.1| - 0.00058 19.3 2.4 0.0012 18.3 1.6 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|313127120|ref|YP_004037390.1| - 0.00063 19.4 1.7 0.0027 17.4 0.3 2.7 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|313127120|ref|YP_004037390.1| - 0.00066 19.9 0.2 0.0021 18.3 0.1 1.9 2 0 0 2 2 1 1 AAA domain ATP_bind_1 PF03029.12 gi|313127120|ref|YP_004037390.1| - 0.00069 19.2 0.5 0.0023 17.4 0.1 2.0 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|313127120|ref|YP_004037390.1| - 0.0007 19.9 0.0 0.0014 18.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter GTP_EFTU PF00009.22 gi|313127120|ref|YP_004037390.1| - 0.0025 17.2 0.1 1.5 8.2 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|313127120|ref|YP_004037390.1| - 0.0032 16.9 0.2 0.0065 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313127120|ref|YP_004037390.1| - 0.0064 16.6 0.0 0.025 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|313127120|ref|YP_004037390.1| - 0.0077 15.9 0.1 0.11 12.1 0.0 2.3 2 0 0 2 2 2 1 NACHT domain MobB PF03205.9 gi|313127120|ref|YP_004037390.1| - 0.0087 15.7 0.3 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|313127120|ref|YP_004037390.1| - 0.0087 15.4 0.1 0.03 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|313127120|ref|YP_004037390.1| - 0.011 14.9 0.1 0.025 13.7 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NB-ARC PF00931.17 gi|313127120|ref|YP_004037390.1| - 0.011 14.5 0.0 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|313127120|ref|YP_004037390.1| - 0.012 15.5 1.6 0.014 15.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|313127120|ref|YP_004037390.1| - 0.019 14.1 0.0 0.049 12.8 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|313127120|ref|YP_004037390.1| - 0.021 14.7 0.1 0.057 13.3 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase PRK PF00485.13 gi|313127120|ref|YP_004037390.1| - 0.022 14.3 0.1 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KAP_NTPase PF07693.9 gi|313127120|ref|YP_004037390.1| - 0.024 13.6 0.0 0.032 13.2 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_33 PF13671.1 gi|313127120|ref|YP_004037390.1| - 0.026 14.4 0.2 0.086 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|313127120|ref|YP_004037390.1| - 0.032 13.3 0.0 0.07 12.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|313127120|ref|YP_004037390.1| - 0.065 12.1 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Miro PF08477.8 gi|313127120|ref|YP_004037390.1| - 0.073 13.5 0.1 0.16 12.4 0.1 1.6 1 0 0 1 1 1 0 Miro-like protein RNA_helicase PF00910.17 gi|313127120|ref|YP_004037390.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase B12-binding PF02310.14 gi|313127121|ref|YP_004037391.1| - 3.2e-20 72.1 0.2 3.8e-20 71.9 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.6 gi|313127121|ref|YP_004037391.1| - 0.099 12.3 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Staphylococcus haemolytic protein BcrAD_BadFG PF01869.15 gi|313127121|ref|YP_004037391.1| - 0.13 11.5 0.0 0.32 10.2 0.0 1.6 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family GAF_2 PF13185.1 gi|313127122|ref|YP_004037392.1| - 7.7e-16 58.9 0.6 5.3e-15 56.1 0.1 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|313127122|ref|YP_004037392.1| - 9.8e-12 45.0 0.6 1.2e-10 41.5 0.1 2.5 2 1 1 3 3 3 1 GAF domain GAF PF01590.21 gi|313127122|ref|YP_004037392.1| - 7.7e-09 35.8 1.4 1.5e-08 34.8 0.2 2.1 2 1 0 2 2 2 1 GAF domain SnoaL_2 PF12680.2 gi|313127122|ref|YP_004037392.1| - 0.0095 16.3 0.5 0.29 11.5 0.3 2.7 2 1 0 2 2 2 1 SnoaL-like domain PAS_8 PF13188.1 gi|313127122|ref|YP_004037392.1| - 0.033 14.0 0.0 1.7 8.6 0.0 2.7 2 0 0 2 2 2 0 PAS domain Peptidase_S9 PF00326.16 gi|313127123|ref|YP_004037393.1| - 8.6e-46 155.8 0.0 1.5e-45 155.0 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|313127123|ref|YP_004037393.1| - 1.4e-12 47.5 0.0 3e-09 36.6 0.1 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.2 gi|313127123|ref|YP_004037393.1| - 3.3e-12 46.3 0.0 7.3e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|313127123|ref|YP_004037393.1| - 1.3e-11 44.2 0.0 4.3e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|313127123|ref|YP_004037393.1| - 4.7e-11 43.0 0.6 2.1e-10 40.8 0.4 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|313127123|ref|YP_004037393.1| - 4.7e-09 35.7 14.3 0.0001 21.9 0.1 6.2 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat AXE1 PF05448.7 gi|313127123|ref|YP_004037393.1| - 2.7e-08 32.7 0.0 2.9e-06 26.0 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.6 gi|313127123|ref|YP_004037393.1| - 1.6e-05 24.7 0.0 0.041 13.5 0.0 2.3 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.16 gi|313127123|ref|YP_004037393.1| - 3e-05 22.7 0.1 0.62 8.5 0.0 4.3 2 2 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9_N PF02897.10 gi|313127123|ref|YP_004037393.1| - 5.2e-05 21.9 0.1 0.0001 21.0 0.1 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_3 PF07859.8 gi|313127123|ref|YP_004037393.1| - 0.00035 20.2 0.1 0.0038 16.8 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|313127123|ref|YP_004037393.1| - 0.00051 19.6 0.0 0.042 13.4 0.0 2.3 1 1 1 2 2 2 1 alpha/beta hydrolase fold Lactonase PF10282.4 gi|313127123|ref|YP_004037393.1| - 0.0006 18.9 0.0 0.11 11.5 0.0 2.3 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Hydrolase_4 PF12146.3 gi|313127123|ref|YP_004037393.1| - 0.001 18.8 0.1 0.0035 17.1 0.0 1.9 1 0 0 1 1 1 1 Putative lysophospholipase Kelch_6 PF13964.1 gi|313127123|ref|YP_004037393.1| - 0.0051 16.9 0.1 23 5.3 0.0 4.6 5 0 0 5 5 5 0 Kelch motif Abhydrolase_2 PF02230.11 gi|313127123|ref|YP_004037393.1| - 0.0074 15.7 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|313127123|ref|YP_004037393.1| - 0.011 15.5 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Peptidase_S28 PF05577.7 gi|313127123|ref|YP_004037393.1| - 0.025 13.1 0.0 0.037 12.6 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Esterase PF00756.15 gi|313127123|ref|YP_004037393.1| - 0.026 13.9 0.0 0.16 11.3 0.0 2.2 1 1 0 1 1 1 0 Putative esterase Esterase_phd PF10503.4 gi|313127123|ref|YP_004037393.1| - 0.027 13.7 0.0 0.097 11.9 0.0 1.7 2 0 0 2 2 2 0 Esterase PHB depolymerase PepSY PF03413.14 gi|313127123|ref|YP_004037393.1| - 0.028 15.0 2.4 0.86 10.2 0.1 3.3 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain MTH865 PF07747.6 gi|313127124|ref|YP_004037394.1| - 1.2e-24 85.6 0.1 1.5e-24 85.4 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family FmdA_AmdA PF03069.10 gi|313127124|ref|YP_004037394.1| - 0.0037 16.0 0.0 0.0044 15.7 0.0 1.1 1 0 0 1 1 1 1 Acetamidase/Formamidase family Peptidase_M42 PF05343.9 gi|313127125|ref|YP_004037395.1| - 3.9e-91 304.8 6.4 4.7e-91 304.5 4.4 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|313127125|ref|YP_004037395.1| - 1.3e-12 47.6 0.4 2.3e-12 46.8 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|313127125|ref|YP_004037395.1| - 4.6e-05 22.1 0.5 0.068 11.6 0.0 2.2 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|313127125|ref|YP_004037395.1| - 0.0005 19.8 3.9 0.0008 19.1 0.1 2.4 2 1 0 2 2 2 1 Peptidase family M28 Copper-bind PF00127.15 gi|313127126|ref|YP_004037396.1| - 4.2e-15 55.7 0.2 8.5e-15 54.8 0.1 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|313127126|ref|YP_004037396.1| - 0.009 15.9 9.5 0.009 15.9 6.6 3.7 4 1 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|313127126|ref|YP_004037396.1| - 0.057 12.6 7.5 0.2 10.8 5.2 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PsbQ PF05757.6 gi|313127126|ref|YP_004037396.1| - 0.22 10.8 3.3 0.34 10.2 2.3 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) SSP160 PF06933.6 gi|313127126|ref|YP_004037396.1| - 4.2 5.2 15.9 6.2 4.6 11.0 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Glyco_trans_4_4 PF13579.1 gi|313127127|ref|YP_004037397.1| - 6.2e-19 68.7 7.4 2e-18 67.0 2.1 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|313127127|ref|YP_004037397.1| - 1.3e-14 54.0 0.0 1.8e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313127127|ref|YP_004037397.1| - 1.1e-12 48.0 0.2 2.5e-12 46.8 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|313127127|ref|YP_004037397.1| - 5.7e-05 22.9 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like MgtE_N PF03448.12 gi|313127127|ref|YP_004037397.1| - 0.035 14.4 1.3 0.82 10.0 0.8 2.6 1 1 1 2 2 2 0 MgtE intracellular N domain DUF420 PF04238.7 gi|313127128|ref|YP_004037398.1| - 2.1e-36 124.7 8.3 2.1e-36 124.7 5.8 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|313127128|ref|YP_004037398.1| - 0.0026 17.8 2.5 0.0026 17.8 1.7 2.4 1 1 2 3 3 3 1 Predicted membrane protein (DUF2306) MASE1 PF05231.9 gi|313127128|ref|YP_004037398.1| - 0.18 10.7 20.5 0.86 8.5 14.2 1.9 1 1 0 1 1 1 0 MASE1 DUF4029 PF13221.1 gi|313127128|ref|YP_004037398.1| - 0.45 10.9 2.4 1.8 8.9 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4029) DUF2231 PF09990.4 gi|313127128|ref|YP_004037398.1| - 5.9 7.2 14.3 0.14 12.4 3.1 2.8 2 2 0 2 2 2 0 Predicted membrane protein (DUF2231) Fe-ADH_2 PF13685.1 gi|313127129|ref|YP_004037399.1| - 5.6e-60 202.7 1.5 6.9e-60 202.4 1.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|313127129|ref|YP_004037399.1| - 1.1e-22 80.1 5.6 1.9e-22 79.4 3.9 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|313127129|ref|YP_004037399.1| - 1.2e-12 47.2 0.1 3.7e-12 45.7 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase LysE PF01810.13 gi|313127130|ref|YP_004037400.1| - 1.4e-29 102.7 2.7 3.6e-28 98.1 1.9 2.1 1 1 0 1 1 1 1 LysE type translocator UPF0016 PF01169.14 gi|313127131|ref|YP_004037401.1| - 3.3e-25 88.0 14.7 8.2e-16 57.9 1.6 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 DUF754 PF05449.6 gi|313127131|ref|YP_004037401.1| - 3.9 7.5 5.9 10 6.2 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF754) Fe_dep_repr_C PF02742.10 gi|313127132|ref|YP_004037402.1| - 6.9e-29 99.3 1.4 1.4e-28 98.3 0.9 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|313127132|ref|YP_004037402.1| - 8.1e-20 70.5 0.1 1.9e-19 69.3 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|313127132|ref|YP_004037402.1| - 1.7e-15 56.6 0.6 4e-15 55.5 0.0 1.9 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|313127132|ref|YP_004037402.1| - 3.1e-07 29.9 0.0 1.3e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|313127132|ref|YP_004037402.1| - 4.2e-07 29.5 0.0 9.3e-07 28.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|313127132|ref|YP_004037402.1| - 8.3e-06 25.4 0.1 9.9e-05 21.9 0.1 2.6 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|313127132|ref|YP_004037402.1| - 1e-05 25.0 0.2 8.7e-05 22.0 0.0 2.4 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|313127132|ref|YP_004037402.1| - 1.4e-05 25.2 0.0 7.5e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Crp PF00325.15 gi|313127132|ref|YP_004037402.1| - 1.5e-05 24.3 0.0 2.9e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_24 PF13412.1 gi|313127132|ref|YP_004037402.1| - 9.4e-05 21.7 0.0 0.00028 20.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313127132|ref|YP_004037402.1| - 0.00017 21.3 0.0 0.0024 17.6 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313127132|ref|YP_004037402.1| - 0.0005 19.7 0.0 0.00096 18.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|313127132|ref|YP_004037402.1| - 0.001 18.7 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|313127132|ref|YP_004037402.1| - 0.0011 18.8 0.1 0.0023 17.7 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|313127132|ref|YP_004037402.1| - 0.0017 18.0 0.1 0.007 16.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|313127132|ref|YP_004037402.1| - 0.0024 17.5 0.0 0.0072 15.9 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|313127132|ref|YP_004037402.1| - 0.0026 17.8 0.0 0.0061 16.6 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator FeoC PF09012.5 gi|313127132|ref|YP_004037402.1| - 0.0029 17.2 0.0 0.007 16.0 0.0 1.6 2 0 0 2 2 1 1 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|313127132|ref|YP_004037402.1| - 0.0063 16.6 0.0 0.019 15.0 0.0 1.8 2 0 0 2 2 2 1 Penicillinase repressor HTH_Tnp_ISL3 PF13542.1 gi|313127132|ref|YP_004037402.1| - 0.0075 15.4 0.0 3.3 6.9 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HrcA_DNA-bdg PF03444.10 gi|313127132|ref|YP_004037402.1| - 0.0099 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_13 PF11972.3 gi|313127132|ref|YP_004037402.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.16 gi|313127132|ref|YP_004037402.1| - 0.013 14.9 0.0 0.066 12.6 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_15 PF12324.3 gi|313127132|ref|YP_004037402.1| - 0.037 13.6 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Topoisom_bac PF01131.15 gi|313127132|ref|YP_004037402.1| - 0.054 12.3 0.0 0.068 11.9 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_11 PF08279.7 gi|313127132|ref|YP_004037402.1| - 0.13 11.8 0.0 0.46 10.1 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.1 gi|313127132|ref|YP_004037402.1| - 0.14 11.8 0.0 0.58 9.8 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain PALP PF00291.20 gi|313127133|ref|YP_004037403.1| - 1.8e-55 188.3 2.0 2.1e-55 188.1 1.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Amino_oxidase PF01593.19 gi|313127134|ref|YP_004037404.1| - 3.3e-40 138.5 1.6 3.4e-39 135.1 1.1 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|313127134|ref|YP_004037404.1| - 6.6e-17 61.3 0.1 1.6e-16 60.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313127134|ref|YP_004037404.1| - 6.7e-14 51.5 1.9 3.8e-06 26.0 0.5 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313127134|ref|YP_004037404.1| - 8.2e-08 31.1 0.1 7.9e-05 21.3 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|313127134|ref|YP_004037404.1| - 4e-07 30.2 0.0 2.6e-05 24.4 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313127134|ref|YP_004037404.1| - 7.9e-07 29.4 1.7 0.00013 22.3 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313127134|ref|YP_004037404.1| - 9.3e-07 28.0 2.0 1.3e-06 27.5 0.5 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|313127134|ref|YP_004037404.1| - 3e-06 27.2 0.8 5.6e-05 23.1 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|313127134|ref|YP_004037404.1| - 4.2e-06 26.0 0.4 0.00013 21.1 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|313127134|ref|YP_004037404.1| - 4.5e-05 22.6 0.1 9e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.1 gi|313127134|ref|YP_004037404.1| - 0.00011 22.4 1.0 0.0032 17.7 0.0 2.8 2 1 1 3 3 3 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|313127134|ref|YP_004037404.1| - 0.00017 21.2 1.0 0.00026 20.5 0.2 1.6 2 0 0 2 2 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|313127134|ref|YP_004037404.1| - 0.00053 19.7 1.8 0.099 12.4 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|313127134|ref|YP_004037404.1| - 0.0013 17.7 2.3 0.29 9.9 0.2 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|313127134|ref|YP_004037404.1| - 0.0014 17.7 5.8 0.0017 17.5 2.4 2.2 2 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|313127134|ref|YP_004037404.1| - 0.0024 17.8 0.3 0.0024 17.8 0.2 2.0 2 0 0 2 2 2 1 NADH(P)-binding GIDA PF01134.17 gi|313127134|ref|YP_004037404.1| - 0.0031 16.4 0.4 0.0031 16.4 0.3 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.11 gi|313127134|ref|YP_004037404.1| - 0.0059 16.0 0.6 0.054 12.9 0.1 2.5 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|313127134|ref|YP_004037404.1| - 0.011 15.4 0.2 0.4 10.4 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|313127134|ref|YP_004037404.1| - 0.013 15.1 1.5 0.019 14.6 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|313127134|ref|YP_004037404.1| - 0.019 14.9 0.4 0.56 10.2 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain YjeF_N PF03853.10 gi|313127134|ref|YP_004037404.1| - 0.031 13.8 0.8 0.058 12.9 0.1 1.7 2 0 0 2 2 2 0 YjeF-related protein N-terminus FMO-like PF00743.14 gi|313127134|ref|YP_004037404.1| - 0.11 10.7 0.0 0.15 10.1 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like AdoHcyase_NAD PF00670.16 gi|313127134|ref|YP_004037404.1| - 0.25 11.1 2.0 11 5.8 0.1 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.20 gi|313127134|ref|YP_004037404.1| - 0.31 10.9 2.9 0.77 9.6 0.1 2.3 2 0 0 2 2 2 0 short chain dehydrogenase ThiF PF00899.16 gi|313127134|ref|YP_004037404.1| - 0.32 10.8 3.3 12 5.7 0.4 2.4 2 0 0 2 2 2 0 ThiF family Trp_halogenase PF04820.9 gi|313127134|ref|YP_004037404.1| - 0.85 8.1 3.0 0.54 8.8 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Metallophos_2 PF12850.2 gi|313127135|ref|YP_004037405.1| - 1.4e-09 38.0 0.1 1.9e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313127135|ref|YP_004037405.1| - 2.6e-06 26.9 0.1 3.8e-05 23.1 0.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase TrbC_Ftype PF09673.5 gi|313127135|ref|YP_004037405.1| - 0.082 12.5 0.0 0.12 11.9 0.0 1.4 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein MarR_2 PF12802.2 gi|313127136|ref|YP_004037406.1| - 2.7e-09 36.5 0.1 1e-08 34.7 0.1 2.0 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313127136|ref|YP_004037406.1| - 3.7e-09 35.8 0.0 8.9e-09 34.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|313127136|ref|YP_004037406.1| - 3.1e-07 30.6 3.3 8.9e-06 25.9 0.0 3.6 4 0 0 4 4 4 1 Winged helix DNA-binding domain MarR PF01047.17 gi|313127136|ref|YP_004037406.1| - 9.8e-07 28.3 0.0 2.4e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313127136|ref|YP_004037406.1| - 0.00015 21.2 0.0 0.00041 19.8 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313127136|ref|YP_004037406.1| - 0.00025 20.7 0.1 0.00055 19.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|313127136|ref|YP_004037406.1| - 0.0017 18.1 0.0 0.0039 16.9 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix NMD3 PF04981.8 gi|313127136|ref|YP_004037406.1| - 0.002 17.2 0.0 0.12 11.4 0.1 2.1 2 0 0 2 2 2 1 NMD3 family HTH_5 PF01022.15 gi|313127136|ref|YP_004037406.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|313127136|ref|YP_004037406.1| - 0.0028 17.7 0.0 0.011 15.7 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.14 gi|313127136|ref|YP_004037406.1| - 0.003 17.2 0.2 0.0063 16.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|313127136|ref|YP_004037406.1| - 0.0033 17.1 0.1 0.012 15.3 0.0 2.0 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313127136|ref|YP_004037406.1| - 0.0034 17.2 0.1 0.0094 15.8 0.1 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_13 PF11972.3 gi|313127136|ref|YP_004037406.1| - 0.004 16.9 0.0 0.0092 15.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Nitro_FeMo-Co PF02579.12 gi|313127136|ref|YP_004037406.1| - 0.015 15.3 0.2 0.039 14.0 0.1 1.7 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor HTH_AsnC-type PF13404.1 gi|313127136|ref|YP_004037406.1| - 0.057 12.9 0.2 0.67 9.5 0.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF977 PF06163.6 gi|313127136|ref|YP_004037406.1| - 0.061 13.0 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_11 PF08279.7 gi|313127136|ref|YP_004037406.1| - 0.072 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain MerB PF03243.10 gi|313127136|ref|YP_004037406.1| - 0.078 12.8 0.1 6.7 6.5 0.0 2.3 1 1 1 2 2 2 0 Alkylmercury lyase HTH_3 PF01381.17 gi|313127136|ref|YP_004037406.1| - 0.1 12.4 0.1 0.34 10.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix LexA_DNA_bind PF01726.11 gi|313127136|ref|YP_004037406.1| - 0.14 11.7 0.2 0.84 9.2 0.0 2.2 2 1 0 2 2 2 0 LexA DNA binding domain DnaJ PF00226.26 gi|313127137|ref|YP_004037407.1| - 5.3e-11 42.0 0.2 8.2e-11 41.4 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain PPDK_N PF01326.14 gi|313127138|ref|YP_004037408.1| - 2e-106 355.7 3.4 3.7e-106 354.8 2.4 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|313127138|ref|YP_004037408.1| - 2.3e-78 263.0 0.0 3.4e-78 262.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|313127138|ref|YP_004037408.1| - 2.5e-28 97.4 2.3 4.4e-28 96.6 0.9 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|313127138|ref|YP_004037408.1| - 0.00068 19.4 2.0 1.2 8.8 0.0 3.5 3 0 0 3 3 3 2 PEP-utilising enzyme, N-terminal Pyridoxal_deC PF00282.14 gi|313127139|ref|YP_004037409.1| - 2.2e-30 105.3 0.0 3.1e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|313127139|ref|YP_004037409.1| - 2.7e-11 42.8 0.0 3e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|313127139|ref|YP_004037409.1| - 3.7e-07 29.5 0.0 4.3e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.14 gi|313127139|ref|YP_004037409.1| - 0.001 17.5 0.0 0.0015 16.9 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase SNARE_assoc PF09335.6 gi|313127140|ref|YP_004037410.1| - 2.4e-11 43.9 3.7 7.6e-11 42.2 2.5 1.8 1 1 0 1 1 1 1 SNARE associated Golgi protein CMD PF02627.15 gi|313127141|ref|YP_004037411.1| - 4.6e-14 52.0 0.3 7.3e-14 51.3 0.2 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family TatD_DNase PF01026.16 gi|313127141|ref|YP_004037411.1| - 0.031 13.5 0.1 0.033 13.3 0.1 1.1 1 0 0 1 1 1 0 TatD related DNase Thioredoxin_2 PF13098.1 gi|313127141|ref|YP_004037411.1| - 0.032 14.4 0.1 0.046 13.9 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain CENP-F_leu_zip PF10473.4 gi|313127141|ref|YP_004037411.1| - 0.056 13.2 0.6 0.099 12.5 0.4 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 THUMP PF02926.12 gi|313127141|ref|YP_004037411.1| - 0.11 12.4 0.1 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 THUMP domain Glu-tRNAGln PF02686.10 gi|313127141|ref|YP_004037411.1| - 0.16 11.8 1.5 0.58 10.0 0.3 2.2 2 0 0 2 2 2 0 Glu-tRNAGln amidotransferase C subunit tRNA-synt_1g PF09334.6 gi|313127143|ref|YP_004037413.1| - 3.9e-138 460.3 0.0 5.9e-138 459.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|313127143|ref|YP_004037413.1| - 3.8e-24 84.3 0.3 2e-23 82.0 0.1 2.1 2 0 0 2 2 2 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|313127143|ref|YP_004037413.1| - 6.7e-16 57.4 0.7 3e-09 35.4 0.1 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|313127143|ref|YP_004037413.1| - 4.5e-10 39.1 0.0 1.3e-06 27.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|313127143|ref|YP_004037413.1| - 6.1e-08 32.5 0.0 1.4e-07 31.3 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|313127143|ref|YP_004037413.1| - 0.00032 19.6 1.7 0.17 10.6 0.1 3.2 3 1 0 4 4 4 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|313127143|ref|YP_004037413.1| - 0.032 12.9 0.8 0.98 8.0 0.0 2.8 2 1 0 3 3 3 0 tRNA synthetases class I (K) DUF2423 PF10338.4 gi|313127143|ref|YP_004037413.1| - 0.11 12.5 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) Mpt_N PF09176.6 gi|313127143|ref|YP_004037413.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal DUF848 PF05852.6 gi|313127143|ref|YP_004037413.1| - 7.2 6.4 9.1 5.6 6.8 2.7 2.6 3 0 0 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) PK PF00224.16 gi|313127144|ref|YP_004037414.1| - 1.3e-109 366.0 4.1 2.1e-109 365.3 2.9 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|313127144|ref|YP_004037414.1| - 3.8e-34 116.7 0.8 6.4e-34 116.0 0.1 1.7 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|313127144|ref|YP_004037414.1| - 1.4e-09 37.3 0.1 2.5e-08 33.3 0.0 2.8 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|313127144|ref|YP_004037414.1| - 0.0027 16.6 2.0 0.0063 15.4 1.1 1.8 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF4366 PF14283.1 gi|313127146|ref|YP_004037416.1| - 0.0028 17.1 1.4 0.15 11.4 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4366) DUF4551 PF15087.1 gi|313127146|ref|YP_004037416.1| - 0.037 12.4 0.0 0.066 11.5 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4551) Lamp PF01299.12 gi|313127146|ref|YP_004037416.1| - 2 7.4 5.5 4.5 6.3 3.8 1.5 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) Mrr_cat PF04471.7 gi|313127147|ref|YP_004037417.1| - 1.1e-08 34.8 0.0 1.8e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF4352 PF11611.3 gi|313127147|ref|YP_004037417.1| - 2.2e-07 31.0 0.0 3.8e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF1049 PF06305.6 gi|313127147|ref|YP_004037417.1| - 1.4 8.4 4.8 2.5 7.6 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) NfeD PF01957.13 gi|313127148|ref|YP_004037418.1| - 1.1e-11 45.0 1.9 1.5e-11 44.6 1.3 1.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding YtpI PF14007.1 gi|313127148|ref|YP_004037418.1| - 0.015 15.1 0.3 0.025 14.5 0.2 1.3 1 0 0 1 1 1 0 YtpI-like protein PUA PF01472.15 gi|313127148|ref|YP_004037418.1| - 0.25 11.0 1.2 0.36 10.5 0.1 1.8 2 0 0 2 2 2 0 PUA domain DUF1469 PF07332.6 gi|313127148|ref|YP_004037418.1| - 0.52 10.0 7.9 0.84 9.3 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Band_7 PF01145.20 gi|313127149|ref|YP_004037419.1| - 5.2e-38 130.7 4.5 5.2e-38 130.7 3.1 2.6 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|313127149|ref|YP_004037419.1| - 0.0002 20.9 1.3 0.00044 19.8 0.1 2.1 3 0 0 3 3 3 1 SPFH domain-Band 7 family HTH_20 PF12840.2 gi|313127150|ref|YP_004037420.1| - 1.8e-12 46.8 0.2 4.3e-06 26.4 0.2 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|313127150|ref|YP_004037420.1| - 7.9e-09 35.0 0.0 5.1e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313127150|ref|YP_004037420.1| - 1.6e-08 34.1 0.5 1.7e-05 24.3 0.2 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|313127150|ref|YP_004037420.1| - 4.5e-07 29.1 0.0 0.0001 21.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|313127150|ref|YP_004037420.1| - 1.5e-06 28.1 0.0 0.039 13.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313127150|ref|YP_004037420.1| - 1.7e-06 27.5 0.9 0.00024 20.6 0.1 3.1 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|313127150|ref|YP_004037420.1| - 5.2e-06 26.0 0.0 1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313127150|ref|YP_004037420.1| - 1e-05 25.1 0.0 0.00068 19.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313127150|ref|YP_004037420.1| - 6.9e-05 22.4 0.0 0.00029 20.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|313127150|ref|YP_004037420.1| - 0.00026 20.5 0.0 0.00064 19.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|313127150|ref|YP_004037420.1| - 0.00067 19.9 0.2 0.1 12.9 0.0 2.5 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|313127150|ref|YP_004037420.1| - 0.0011 18.4 0.2 0.0027 17.1 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313127150|ref|YP_004037420.1| - 0.0012 18.6 0.0 0.0099 15.6 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313127150|ref|YP_004037420.1| - 0.0017 18.2 0.1 0.0071 16.2 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|313127150|ref|YP_004037420.1| - 0.0063 15.9 0.1 0.062 12.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Tnp_1 PF01527.15 gi|313127150|ref|YP_004037420.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_3 PF01381.17 gi|313127150|ref|YP_004037420.1| - 0.049 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_6 PF01418.12 gi|313127150|ref|YP_004037420.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_10 PF04967.7 gi|313127150|ref|YP_004037420.1| - 0.071 12.6 0.1 0.53 9.8 0.0 2.4 3 0 0 3 3 3 0 HTH DNA binding domain HTH_29 PF13551.1 gi|313127150|ref|YP_004037420.1| - 0.078 13.1 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix DUF2250 PF10007.4 gi|313127150|ref|YP_004037420.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.1 gi|313127151|ref|YP_004037421.1| - 0.00049 19.4 0.3 2.6 7.4 0.0 3.0 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|313127151|ref|YP_004037421.1| - 0.0075 15.8 0.1 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain RPA_C PF08784.6 gi|313127151|ref|YP_004037421.1| - 0.01 16.2 0.0 0.012 16.0 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal GerE PF00196.14 gi|313127151|ref|YP_004037421.1| - 0.029 13.6 0.1 0.3 10.4 0.1 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family RepL PF05732.6 gi|313127151|ref|YP_004037421.1| - 0.12 11.5 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) UPF0104 PF03706.8 gi|313127152|ref|YP_004037422.1| - 4.2e-36 124.7 26.3 7.5e-36 123.9 18.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|313127152|ref|YP_004037422.1| - 2.3e-27 95.7 0.0 3.9e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313127152|ref|YP_004037422.1| - 1.3e-16 61.1 1.0 2.9e-16 59.9 0.7 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|313127152|ref|YP_004037422.1| - 1.4e-07 30.8 0.0 2.2e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|313127152|ref|YP_004037422.1| - 0.0015 18.8 0.2 0.0028 17.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTPase_I-T PF01931.13 gi|313127153|ref|YP_004037423.1| - 1.9e-37 128.5 0.0 2.2e-37 128.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 Peripla_BP_2 PF01497.13 gi|313127154|ref|YP_004037424.1| - 1.3e-23 83.3 0.0 2.1e-23 82.7 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TFIIB PF00382.14 gi|313127155|ref|YP_004037425.1| - 8.4e-42 140.8 0.3 1.4e-22 79.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313127155|ref|YP_004037425.1| - 5e-16 57.7 3.1 5e-16 57.7 2.2 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|313127155|ref|YP_004037425.1| - 0.00079 18.6 0.7 1.3 8.4 0.0 4.1 4 0 0 4 4 4 1 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|313127155|ref|YP_004037425.1| - 0.001 18.1 1.1 0.0018 17.4 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|313127155|ref|YP_004037425.1| - 0.0016 17.8 1.0 0.0026 17.1 0.7 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313127155|ref|YP_004037425.1| - 0.026 14.1 1.1 0.068 12.8 0.8 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|313127155|ref|YP_004037425.1| - 0.027 14.3 0.0 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.2 gi|313127155|ref|YP_004037425.1| - 0.037 13.8 0.4 0.069 12.9 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|313127155|ref|YP_004037425.1| - 0.14 11.9 1.6 0.26 11.1 1.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.15 gi|313127155|ref|YP_004037425.1| - 0.15 11.9 0.5 15 5.5 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin zf-IS66 PF13005.2 gi|313127155|ref|YP_004037425.1| - 0.57 10.1 3.2 5.4 7.0 0.1 2.9 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.1 gi|313127155|ref|YP_004037425.1| - 1 9.7 5.7 0.2 11.9 0.8 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|313127155|ref|YP_004037425.1| - 1.7 8.7 4.3 0.73 9.8 0.4 2.1 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|313127155|ref|YP_004037425.1| - 3.4 7.6 4.6 3.6 7.6 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DHquinase_I PF01487.10 gi|313127156|ref|YP_004037426.1| - 1.3e-47 162.3 0.0 1.6e-47 162.0 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DNA_pol_A_exo1 PF01612.15 gi|313127156|ref|YP_004037426.1| - 0.077 12.4 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 3'-5' exonuclease DZR PF12773.2 gi|313127157|ref|YP_004037427.1| - 0.00099 18.8 0.3 0.0014 18.4 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF998 PF06197.8 gi|313127157|ref|YP_004037427.1| - 0.0032 16.7 2.9 0.0042 16.4 2.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) zinc_ribbon_2 PF13240.1 gi|313127157|ref|YP_004037427.1| - 0.0038 16.6 0.5 0.0057 16.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313127157|ref|YP_004037427.1| - 0.023 13.8 1.0 0.035 13.3 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313127157|ref|YP_004037427.1| - 0.041 13.6 0.4 0.058 13.1 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TM2 PF05154.11 gi|313127157|ref|YP_004037427.1| - 0.096 12.9 6.7 0.57 10.4 4.6 2.1 1 1 0 1 1 1 0 TM2 domain zinc-ribbons_6 PF07191.7 gi|313127157|ref|YP_004037427.1| - 0.15 11.8 0.5 0.24 11.2 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.4 gi|313127157|ref|YP_004037427.1| - 0.16 11.7 3.3 0.26 10.9 2.3 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF4231 PF14015.1 gi|313127157|ref|YP_004037427.1| - 0.18 11.8 2.6 0.19 11.7 1.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) Rad50_zn_hook PF04423.9 gi|313127157|ref|YP_004037427.1| - 0.18 11.2 2.0 0.58 9.6 0.5 2.0 1 1 1 2 2 2 0 Rad50 zinc hook motif DUF1272 PF06906.6 gi|313127157|ref|YP_004037427.1| - 0.29 11.0 2.1 6.1 6.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-Di19 PF05605.7 gi|313127157|ref|YP_004037427.1| - 0.49 10.5 1.9 10 6.3 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DHQS PF01959.11 gi|313127158|ref|YP_004037428.1| - 4.6e-154 512.3 2.9 5.2e-154 512.1 2.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|313127158|ref|YP_004037428.1| - 0.00023 20.4 0.0 0.03 13.5 0.0 2.3 2 0 0 2 2 2 2 Hint module Hint_2 PF13403.1 gi|313127158|ref|YP_004037428.1| - 0.00028 20.8 0.8 0.083 12.8 0.0 3.1 3 0 0 3 3 3 2 Hint domain QRPTase_C PF01729.14 gi|313127158|ref|YP_004037428.1| - 0.02 14.4 0.5 0.21 11.0 0.1 2.4 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain SHOCT PF09851.4 gi|313127159|ref|YP_004037429.1| - 4.3e-07 29.1 2.9 6.1e-07 28.6 2.0 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|313127159|ref|YP_004037429.1| - 6e-05 22.7 0.7 9.6e-05 22.0 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Yip1 PF04893.12 gi|313127159|ref|YP_004037429.1| - 0.0026 17.3 5.3 0.0029 17.1 3.7 1.1 1 0 0 1 1 1 1 Yip1 domain DUF533 PF04391.7 gi|313127159|ref|YP_004037429.1| - 0.056 12.8 0.1 0.067 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF533) DctQ PF04290.7 gi|313127159|ref|YP_004037429.1| - 0.31 10.7 5.4 0.39 10.4 3.7 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component NfeD PF01957.13 gi|313127159|ref|YP_004037429.1| - 0.37 10.9 5.7 0.7 10.0 3.9 1.4 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Apq12 PF12716.2 gi|313127159|ref|YP_004037429.1| - 4.2 7.1 6.7 3.6 7.3 1.4 2.2 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis DUF1469 PF07332.6 gi|313127159|ref|YP_004037429.1| - 7.2 6.3 10.8 12 5.5 7.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) DeoC PF01791.4 gi|313127160|ref|YP_004037430.1| - 7e-42 143.3 0.0 8.9e-42 142.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|313127160|ref|YP_004037430.1| - 9.9e-06 24.9 0.1 1.7e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.19 gi|313127160|ref|YP_004037430.1| - 0.01 15.2 0.3 0.016 14.5 0.2 1.3 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.7 gi|313127160|ref|YP_004037430.1| - 0.05 12.5 0.0 0.074 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Trp_syntA PF00290.15 gi|313127161|ref|YP_004037431.1| - 1.3e-92 308.9 0.0 1.6e-92 308.7 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|313127161|ref|YP_004037431.1| - 6.8e-05 22.2 0.1 0.00012 21.4 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|313127161|ref|YP_004037431.1| - 0.0001 21.6 1.2 0.00087 18.6 0.4 2.1 2 0 0 2 2 2 1 PcrB family PA PF02225.17 gi|313127161|ref|YP_004037431.1| - 0.027 14.1 0.1 3.4 7.4 0.0 2.5 2 0 0 2 2 2 0 PA domain IGPS PF00218.16 gi|313127161|ref|YP_004037431.1| - 0.13 11.2 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase ScdA_N PF04405.9 gi|313127161|ref|YP_004037431.1| - 0.13 11.6 0.2 7.2 6.0 0.0 2.5 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) PALP PF00291.20 gi|313127162|ref|YP_004037432.1| - 6.9e-34 117.4 0.4 9.8e-34 116.9 0.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|313127163|ref|YP_004037433.1| - 7e-70 234.9 0.0 7.8e-70 234.8 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|313127163|ref|YP_004037433.1| - 3e-06 26.3 1.4 7.2e-06 25.0 0.9 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase PcrB PF01884.12 gi|313127163|ref|YP_004037433.1| - 9.4e-05 21.7 0.1 0.0003 20.1 0.0 1.8 2 1 1 3 3 3 1 PcrB family QRPTase_C PF01729.14 gi|313127163|ref|YP_004037433.1| - 0.00018 21.1 0.1 0.00081 18.9 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|313127163|ref|YP_004037433.1| - 0.00024 20.1 0.5 0.0047 15.9 0.2 2.6 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|313127163|ref|YP_004037433.1| - 0.00055 19.2 0.0 0.016 14.4 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|313127163|ref|YP_004037433.1| - 0.0024 16.8 0.1 0.0049 15.8 0.0 1.5 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase DeoC PF01791.4 gi|313127163|ref|YP_004037433.1| - 0.0034 16.7 0.1 0.64 9.2 0.0 2.2 2 0 0 2 2 2 2 DeoC/LacD family aldolase NMO PF03060.10 gi|313127163|ref|YP_004037433.1| - 0.015 14.5 1.1 0.37 9.8 0.8 2.1 1 1 0 1 1 1 0 Nitronate monooxygenase ThiG PF05690.9 gi|313127163|ref|YP_004037433.1| - 0.093 11.7 1.2 0.24 10.4 0.3 2.2 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DNA_binding_1 PF01035.15 gi|313127164|ref|YP_004037434.1| - 2.1e-10 40.1 0.0 3e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Abi PF02517.11 gi|313127165|ref|YP_004037435.1| - 5.4e-11 42.4 16.4 6.9e-11 42.1 8.2 2.3 2 0 0 2 2 2 1 CAAX protease self-immunity Lon_C PF05362.8 gi|313127166|ref|YP_004037436.1| - 5.1e-33 114.1 2.8 8.3e-33 113.4 1.9 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|313127166|ref|YP_004037436.1| - 1.2e-29 103.3 0.0 5.5e-21 74.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|313127166|ref|YP_004037436.1| - 6.1e-18 64.7 0.1 9.2e-11 41.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|313127166|ref|YP_004037436.1| - 9.5e-15 54.4 0.1 1.6e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|313127166|ref|YP_004037436.1| - 1.1e-12 47.4 0.6 0.0045 15.8 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|313127166|ref|YP_004037436.1| - 1.4e-10 41.0 0.0 0.00056 19.6 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|313127166|ref|YP_004037436.1| - 1.3e-09 37.5 0.4 3.2e-09 36.3 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|313127166|ref|YP_004037436.1| - 1.4e-07 31.7 0.0 0.023 14.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|313127166|ref|YP_004037436.1| - 2.7e-06 26.6 0.1 0.0013 17.8 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|313127166|ref|YP_004037436.1| - 1.2e-05 24.2 0.1 0.044 12.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|313127166|ref|YP_004037436.1| - 7.6e-05 22.7 0.0 0.15 12.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|313127166|ref|YP_004037436.1| - 8.5e-05 22.7 0.0 0.0079 16.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|313127166|ref|YP_004037436.1| - 0.00052 19.6 0.1 0.58 9.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.6 gi|313127166|ref|YP_004037436.1| - 0.00071 18.3 0.0 0.054 12.1 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_30 PF13604.1 gi|313127166|ref|YP_004037436.1| - 0.0022 17.6 0.0 0.02 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|313127166|ref|YP_004037436.1| - 0.0024 18.1 0.0 0.0077 16.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|313127166|ref|YP_004037436.1| - 0.0037 17.2 0.0 0.82 9.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|313127166|ref|YP_004037436.1| - 0.0045 16.7 0.0 0.013 15.2 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|313127166|ref|YP_004037436.1| - 0.005 16.0 0.0 0.011 15.0 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein T2SE PF00437.15 gi|313127166|ref|YP_004037436.1| - 0.0055 15.6 0.4 0.089 11.6 0.0 2.8 4 0 0 4 4 4 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|313127166|ref|YP_004037436.1| - 0.014 15.3 0.8 0.046 13.5 0.1 2.3 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|313127166|ref|YP_004037436.1| - 0.015 14.4 0.0 0.034 13.2 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|313127166|ref|YP_004037436.1| - 0.019 13.6 0.0 0.028 13.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|313127166|ref|YP_004037436.1| - 0.02 13.8 0.0 0.038 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|313127166|ref|YP_004037436.1| - 0.026 14.8 0.0 0.073 13.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|313127166|ref|YP_004037436.1| - 0.033 13.8 0.0 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|313127166|ref|YP_004037436.1| - 0.051 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|313127166|ref|YP_004037436.1| - 0.069 13.1 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|313127166|ref|YP_004037436.1| - 0.082 13.7 0.6 0.53 11.1 0.0 2.5 2 1 1 3 3 2 0 AAA domain Parvo_NS1 PF01057.12 gi|313127166|ref|YP_004037436.1| - 0.095 11.5 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CTP_transf_2 PF01467.21 gi|313127167|ref|YP_004037437.1| - 1.2e-16 61.1 0.1 2.6e-16 60.0 0.0 1.5 1 1 1 2 2 2 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|313127167|ref|YP_004037437.1| - 0.15 11.4 0.0 0.33 10.3 0.0 1.4 1 1 0 1 1 1 0 Citrate lyase ligase C-terminal domain UPF0126 PF03458.8 gi|313127168|ref|YP_004037438.1| - 3.4e-42 141.9 27.1 3.9e-22 77.6 7.7 2.2 2 0 0 2 2 2 2 UPF0126 domain DUF2985 PF11204.3 gi|313127168|ref|YP_004037438.1| - 0.035 13.8 0.2 0.3 10.8 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) DsbD_2 PF13386.1 gi|313127168|ref|YP_004037438.1| - 0.85 9.3 9.3 0.028 14.1 2.0 1.8 2 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Cpn60_TCP1 PF00118.19 gi|313127169|ref|YP_004037439.1| - 1.3e-144 482.4 3.5 1.5e-144 482.2 2.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SIS_2 PF13580.1 gi|313127169|ref|YP_004037439.1| - 0.021 14.5 0.2 0.098 12.3 0.0 2.2 2 0 0 2 2 2 0 SIS domain Amidohydro_2 PF04909.9 gi|313127170|ref|YP_004037440.1| - 2.7e-12 46.8 2.3 3.6e-12 46.4 1.6 1.3 1 1 0 1 1 1 1 Amidohydrolase Glycos_transf_2 PF00535.21 gi|313127171|ref|YP_004037441.1| - 2.7e-14 53.2 0.2 1.1e-13 51.2 0.1 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313127171|ref|YP_004037441.1| - 1.8e-07 31.1 3.1 6.4e-07 29.3 2.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 LysR_substrate PF03466.15 gi|313127171|ref|YP_004037441.1| - 0.0015 17.6 0.2 0.65 9.0 0.0 2.5 2 1 0 2 2 2 2 LysR substrate binding domain Glyco_trans_2_3 PF13632.1 gi|313127171|ref|YP_004037441.1| - 0.014 15.1 0.1 0.019 14.6 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|313127171|ref|YP_004037441.1| - 0.014 14.4 0.0 0.03 13.4 0.0 1.5 1 1 1 2 2 2 0 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|313127171|ref|YP_004037441.1| - 0.027 13.7 0.1 0.16 11.2 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase family 21 Methyltransf_11 PF08241.7 gi|313127172|ref|YP_004037442.1| - 5.8e-22 77.9 0.1 1.1e-21 77.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313127172|ref|YP_004037442.1| - 1e-17 64.1 0.0 1.5e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313127172|ref|YP_004037442.1| - 5.6e-16 58.3 0.0 2.5e-15 56.2 0.0 1.8 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|313127172|ref|YP_004037442.1| - 6.2e-16 58.9 0.0 9.5e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313127172|ref|YP_004037442.1| - 1.6e-15 57.1 0.0 2.1e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313127172|ref|YP_004037442.1| - 2e-15 56.9 0.1 3.2e-15 56.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127172|ref|YP_004037442.1| - 1.8e-13 50.7 0.0 2.8e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127172|ref|YP_004037442.1| - 3e-13 49.8 0.1 4.8e-13 49.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|313127172|ref|YP_004037442.1| - 1.1e-08 34.8 0.0 1.1e-07 31.5 0.0 2.3 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|313127172|ref|YP_004037442.1| - 1.7e-06 27.5 0.0 2.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|313127172|ref|YP_004037442.1| - 2.3e-05 23.5 0.0 3e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|313127172|ref|YP_004037442.1| - 8.5e-05 21.3 0.0 0.00012 20.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|313127172|ref|YP_004037442.1| - 0.00011 21.6 0.0 0.00016 21.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_3 PF01596.12 gi|313127172|ref|YP_004037442.1| - 0.00017 20.7 0.0 0.00024 20.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|313127172|ref|YP_004037442.1| - 0.00036 19.7 0.0 0.00051 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|313127172|ref|YP_004037442.1| - 0.00042 19.4 0.0 0.00058 18.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_20 PF12147.3 gi|313127172|ref|YP_004037442.1| - 0.00076 18.4 0.0 0.0019 17.1 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|313127172|ref|YP_004037442.1| - 0.00079 19.0 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|313127172|ref|YP_004037442.1| - 0.0012 17.6 0.0 0.0013 17.4 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase FmrO PF07091.6 gi|313127172|ref|YP_004037442.1| - 0.0013 17.7 0.0 0.0018 17.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) TehB PF03848.9 gi|313127172|ref|YP_004037442.1| - 0.0022 17.2 0.0 0.0027 16.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|313127172|ref|YP_004037442.1| - 0.0028 17.3 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|313127172|ref|YP_004037442.1| - 0.005 16.2 0.0 0.0065 15.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.6 gi|313127172|ref|YP_004037442.1| - 0.014 14.8 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_24 PF13578.1 gi|313127172|ref|YP_004037442.1| - 0.019 15.7 0.2 0.047 14.5 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|313127172|ref|YP_004037442.1| - 0.02 14.4 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|313127172|ref|YP_004037442.1| - 0.027 14.4 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltrans_SAM PF10672.4 gi|313127172|ref|YP_004037442.1| - 0.098 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase DUF938 PF06080.7 gi|313127172|ref|YP_004037442.1| - 0.16 11.4 0.0 0.38 10.2 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Pyridox_oxidase PF01243.15 gi|313127173|ref|YP_004037443.1| - 6.6e-19 67.7 0.0 8.7e-19 67.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|313127173|ref|YP_004037443.1| - 4.3e-06 26.6 0.1 4.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase TRAM PF01938.15 gi|313127173|ref|YP_004037443.1| - 0.048 13.4 0.0 0.11 12.3 0.0 1.8 1 1 0 1 1 1 0 TRAM domain HTH_24 PF13412.1 gi|313127174|ref|YP_004037444.1| - 2.6e-06 26.6 0.0 1.1e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313127174|ref|YP_004037444.1| - 8.9e-05 22.0 0.1 0.00011 21.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313127174|ref|YP_004037444.1| - 9.3e-05 22.1 0.6 0.00085 19.0 0.2 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|313127174|ref|YP_004037444.1| - 0.00072 18.9 0.7 0.0013 18.0 0.5 1.6 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|313127174|ref|YP_004037444.1| - 0.002 17.7 1.1 0.016 14.9 0.1 2.5 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|313127174|ref|YP_004037444.1| - 0.0027 17.1 0.0 0.0033 16.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|313127174|ref|YP_004037444.1| - 0.005 16.5 0.0 0.0063 16.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313127174|ref|YP_004037444.1| - 0.0089 15.7 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|313127174|ref|YP_004037444.1| - 0.025 14.6 0.0 0.057 13.5 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|313127174|ref|YP_004037444.1| - 0.068 13.2 0.0 0.088 12.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.7 gi|313127174|ref|YP_004037444.1| - 0.079 12.1 0.0 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_27 PF13463.1 gi|313127174|ref|YP_004037444.1| - 0.094 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|313127174|ref|YP_004037444.1| - 0.11 12.0 0.3 1.4 8.5 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.1 gi|313127174|ref|YP_004037444.1| - 0.13 12.3 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313127174|ref|YP_004037444.1| - 0.13 11.7 0.0 2.4 7.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Lactamase_B PF00753.22 gi|313127175|ref|YP_004037445.1| - 1.4e-16 60.7 7.6 2.7e-16 59.8 5.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313127175|ref|YP_004037445.1| - 0.00022 20.8 0.1 0.00026 20.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CxxCxxCC PF03692.10 gi|313127176|ref|YP_004037446.1| - 5.4e-14 52.4 0.0 1.1e-13 51.3 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|313127176|ref|YP_004037446.1| - 0.043 13.9 1.9 0.069 13.2 0.2 2.1 2 0 0 2 2 2 0 High potential iron-sulfur protein TRAM PF01938.15 gi|313127177|ref|YP_004037447.1| - 6.3e-15 54.7 6.2 7.6e-15 54.4 2.2 2.2 2 1 1 3 3 3 1 TRAM domain Hexapep PF00132.19 gi|313127177|ref|YP_004037447.1| - 0.054 13.0 0.4 0.21 11.1 0.1 2.0 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Radical_SAM PF04055.16 gi|313127178|ref|YP_004037448.1| - 5.9e-14 52.5 0.1 2.1e-13 50.7 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|313127178|ref|YP_004037448.1| - 4.5e-06 26.0 0.0 1.8e-05 24.1 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|313127178|ref|YP_004037448.1| - 3.6e-05 23.6 0.0 0.0001 22.1 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|313127178|ref|YP_004037448.1| - 0.0074 16.1 0.1 0.035 13.9 0.0 2.1 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|313127178|ref|YP_004037448.1| - 0.011 15.8 0.0 0.1 12.7 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|313127178|ref|YP_004037448.1| - 0.087 12.7 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|313127178|ref|YP_004037448.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain FG-GAP_2 PF14312.1 gi|313127179|ref|YP_004037449.1| - 3.1e-38 129.5 9.7 4.6e-09 36.1 0.0 7.4 7 0 0 7 7 7 6 FG-GAP repeat HSP20 PF00011.16 gi|313127181|ref|YP_004037451.1| - 1.4e-06 28.0 0.0 3.2e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DUF4350 PF14258.1 gi|313127181|ref|YP_004037451.1| - 0.068 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DAO PF01266.19 gi|313127182|ref|YP_004037452.1| - 5.8e-61 206.3 9.4 6.9e-61 206.1 6.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313127182|ref|YP_004037452.1| - 2e-09 36.8 5.8 2.9e-09 36.2 4.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|313127182|ref|YP_004037452.1| - 7.3e-08 32.5 2.1 3.4e-06 27.0 1.5 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313127182|ref|YP_004037452.1| - 2.7e-07 30.4 1.5 9.8e-07 28.7 1.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|313127182|ref|YP_004037452.1| - 7.1e-06 26.3 1.2 0.0004 20.7 1.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|313127182|ref|YP_004037452.1| - 1.2e-05 25.5 0.0 2.9e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding HI0933_like PF03486.9 gi|313127182|ref|YP_004037452.1| - 1.9e-05 23.3 1.3 0.00044 18.8 0.9 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|313127182|ref|YP_004037452.1| - 2.6e-05 24.3 0.6 0.00012 22.1 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|313127182|ref|YP_004037452.1| - 2.7e-05 23.6 0.6 0.00033 20.1 0.3 2.3 2 1 1 3 3 3 1 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|313127182|ref|YP_004037452.1| - 0.00045 19.3 0.7 0.00082 18.5 0.5 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|313127182|ref|YP_004037452.1| - 0.00073 18.6 1.1 0.0017 17.4 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|313127182|ref|YP_004037452.1| - 0.0058 16.3 0.4 0.0058 16.3 0.2 1.6 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|313127182|ref|YP_004037452.1| - 0.006 16.3 1.9 0.21 11.3 0.4 2.6 2 1 0 2 2 2 1 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|313127182|ref|YP_004037452.1| - 0.0093 15.3 0.2 0.016 14.5 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.19 gi|313127182|ref|YP_004037452.1| - 0.0098 15.0 0.6 0.088 11.8 0.2 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|313127182|ref|YP_004037452.1| - 0.016 14.1 2.0 0.032 13.1 1.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A ThiF PF00899.16 gi|313127182|ref|YP_004037452.1| - 0.017 14.9 0.5 0.034 13.9 0.3 1.6 1 0 0 1 1 1 0 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|313127182|ref|YP_004037452.1| - 0.023 14.4 0.9 0.041 13.6 0.6 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|313127182|ref|YP_004037452.1| - 0.027 13.6 0.0 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ-1_PfpI PF01965.19 gi|313127182|ref|YP_004037452.1| - 0.044 13.2 0.9 6.4 6.2 0.2 3.0 2 1 0 2 2 2 0 DJ-1/PfpI family FAD_oxidored PF12831.2 gi|313127182|ref|YP_004037452.1| - 0.069 12.2 6.0 0.16 11.0 4.2 1.7 1 1 0 1 1 1 0 FAD dependent oxidoreductase IlvN PF07991.7 gi|313127182|ref|YP_004037452.1| - 0.091 12.1 0.3 0.19 11.0 0.2 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|313127182|ref|YP_004037452.1| - 0.11 12.0 0.3 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Bac_luciferase PF00296.15 gi|313127183|ref|YP_004037453.1| - 9.3e-05 21.6 4.9 0.0001 21.5 2.9 1.3 1 1 0 1 1 1 1 Luciferase-like monooxygenase PrpR_N PF06506.6 gi|313127183|ref|YP_004037453.1| - 0.035 13.5 0.0 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 Propionate catabolism activator NUDIX PF00293.23 gi|313127184|ref|YP_004037454.1| - 4.1e-19 68.5 0.1 5.2e-19 68.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain MFS_1 PF07690.11 gi|313127187|ref|YP_004037457.1| - 5.3e-44 150.3 58.6 3.2e-36 124.7 25.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2627 PF11118.3 gi|313127187|ref|YP_004037457.1| - 0.21 11.7 0.0 0.21 11.7 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2627) UPF0547 PF10571.4 gi|313127188|ref|YP_004037458.1| - 0.0032 17.1 1.2 0.33 10.6 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|313127188|ref|YP_004037458.1| - 0.0043 16.7 0.6 0.0055 16.3 0.4 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|313127188|ref|YP_004037458.1| - 0.006 16.3 1.7 0.013 15.3 1.2 1.6 1 1 0 1 1 1 1 Double zinc ribbon NinF PF05810.7 gi|313127188|ref|YP_004037458.1| - 0.0091 15.7 0.2 0.013 15.2 0.1 1.3 1 0 0 1 1 1 1 NinF protein ADK_lid PF05191.9 gi|313127188|ref|YP_004037458.1| - 0.017 14.7 2.7 0.2 11.3 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.7 gi|313127188|ref|YP_004037458.1| - 0.02 14.6 3.3 0.12 12.2 0.3 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF3039 PF11238.3 gi|313127188|ref|YP_004037458.1| - 0.021 14.2 0.3 0.024 14.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-IS66 PF13005.2 gi|313127188|ref|YP_004037458.1| - 0.033 14.1 2.3 1.4 8.9 0.1 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|313127188|ref|YP_004037458.1| - 0.059 13.1 2.5 0.16 11.7 1.7 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|313127188|ref|YP_004037458.1| - 0.072 12.7 0.6 0.071 12.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|313127188|ref|YP_004037458.1| - 0.072 13.2 0.2 0.088 12.9 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger Arc_trans_TRASH PF08394.5 gi|313127188|ref|YP_004037458.1| - 0.08 13.1 2.5 3.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Archaeal TRASH domain A2L_zn_ribbon PF08792.5 gi|313127188|ref|YP_004037458.1| - 0.11 12.0 1.2 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain FYVE PF01363.16 gi|313127188|ref|YP_004037458.1| - 0.11 12.4 0.6 0.13 12.1 0.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger OrfB_Zn_ribbon PF07282.6 gi|313127188|ref|YP_004037458.1| - 0.13 11.9 1.6 0.2 11.3 1.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|313127188|ref|YP_004037458.1| - 0.15 11.4 1.3 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.7 gi|313127188|ref|YP_004037458.1| - 0.15 11.9 2.3 1.7 8.5 1.6 2.0 1 1 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|313127188|ref|YP_004037458.1| - 0.18 11.3 1.2 4.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|313127188|ref|YP_004037458.1| - 0.2 11.3 4.6 0.66 9.7 0.2 2.1 1 1 1 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|313127188|ref|YP_004037458.1| - 0.24 11.3 3.8 0.54 10.2 2.6 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|313127188|ref|YP_004037458.1| - 0.27 10.5 4.0 1.8 7.8 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|313127188|ref|YP_004037458.1| - 0.44 10.0 2.8 8.4 6.0 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|313127188|ref|YP_004037458.1| - 0.83 8.8 5.5 0.41 9.8 1.8 2.0 2 1 1 3 3 3 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.1 gi|313127188|ref|YP_004037458.1| - 0.98 9.0 2.8 11 5.7 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Aldo_ket_red PF00248.16 gi|313127189|ref|YP_004037459.1| - 1.2e-35 122.7 0.0 2.2e-35 121.8 0.0 1.4 1 1 0 1 1 1 1 Aldo/keto reductase family DHH PF01368.15 gi|313127190|ref|YP_004037460.1| - 2.3e-14 53.2 0.0 3.3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|313127190|ref|YP_004037460.1| - 5.8e-09 35.5 0.7 1.6e-08 34.0 0.5 1.7 1 0 0 1 1 1 1 DHHA1 domain NAD_binding_10 PF13460.1 gi|313127191|ref|YP_004037461.1| - 4.6e-18 65.8 1.0 6e-18 65.4 0.2 1.5 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|313127191|ref|YP_004037461.1| - 3.9e-11 42.8 0.0 8.5e-11 41.7 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313127191|ref|YP_004037461.1| - 2.1e-06 26.6 0.0 2.1e-05 23.3 0.0 2.0 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|313127191|ref|YP_004037461.1| - 6.8e-06 26.0 0.1 1.6e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|313127191|ref|YP_004037461.1| - 9.2e-05 21.9 0.0 0.00018 20.9 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|313127191|ref|YP_004037461.1| - 0.00027 20.3 0.1 0.00058 19.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|313127191|ref|YP_004037461.1| - 0.00032 21.0 0.2 0.0007 19.9 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF1731 PF08338.6 gi|313127191|ref|YP_004037461.1| - 0.0018 17.7 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) DAO PF01266.19 gi|313127191|ref|YP_004037461.1| - 0.0031 16.4 0.4 0.0088 14.9 0.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase RmlD_sub_bind PF04321.12 gi|313127191|ref|YP_004037461.1| - 0.013 14.4 0.1 0.041 12.7 0.0 1.8 1 1 0 1 1 1 0 RmlD substrate binding domain Saccharop_dh PF03435.13 gi|313127191|ref|YP_004037461.1| - 0.021 13.8 0.0 0.03 13.2 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|313127191|ref|YP_004037461.1| - 0.027 14.8 0.0 0.065 13.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|313127191|ref|YP_004037461.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF2231 PF09990.4 gi|313127197|ref|YP_004037467.1| - 0.026 14.8 5.5 0.073 13.4 3.8 1.8 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) T2SE PF00437.15 gi|313127198|ref|YP_004037468.1| - 2.9e-36 124.7 0.0 3.9e-36 124.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|313127198|ref|YP_004037468.1| - 0.038 14.2 0.0 0.075 13.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|313127198|ref|YP_004037468.1| - 0.14 11.7 0.1 0.33 10.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DSRB PF10781.4 gi|313127198|ref|YP_004037468.1| - 0.27 10.7 1.5 1.9 8.0 0.2 2.4 2 0 0 2 2 2 0 Dextransucrase DSRB IncA PF04156.9 gi|313127200|ref|YP_004037470.1| - 0.017 14.7 0.4 0.025 14.1 0.3 1.3 1 1 0 1 1 1 0 IncA protein NPV_P10 PF05531.7 gi|313127200|ref|YP_004037470.1| - 0.023 14.9 0.5 0.35 11.1 0.0 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein SlyX PF04102.7 gi|313127200|ref|YP_004037470.1| - 0.034 14.5 0.7 0.15 12.4 0.1 2.2 2 1 0 2 2 2 0 SlyX Prominin PF05478.6 gi|313127200|ref|YP_004037470.1| - 0.039 11.4 0.3 0.047 11.2 0.2 1.0 1 0 0 1 1 1 0 Prominin Mst1_SARAH PF11629.3 gi|313127200|ref|YP_004037470.1| - 0.044 13.6 0.1 0.09 12.6 0.0 1.5 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 DUF3209 PF11483.3 gi|313127200|ref|YP_004037470.1| - 0.092 13.0 6.4 0.13 12.5 4.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3209) MitMem_reg PF13012.1 gi|313127200|ref|YP_004037470.1| - 0.11 12.6 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Maintenance of mitochondrial structure and function DUF4140 PF13600.1 gi|313127200|ref|YP_004037470.1| - 1.4 9.4 7.4 0.36 11.2 0.5 2.7 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) Tubulin PF00091.20 gi|313127201|ref|YP_004037471.1| - 9.1e-24 84.4 0.1 2.1e-23 83.3 0.0 1.6 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|313127201|ref|YP_004037471.1| - 0.0025 16.8 0.1 0.0045 15.9 0.1 1.4 1 0 0 1 1 1 1 Tubulin like Cementoin PF10511.4 gi|313127201|ref|YP_004037471.1| - 1.4 8.7 4.7 0.72 9.6 1.2 2.0 2 0 0 2 2 2 0 Trappin protein transglutaminase binding domain Phosphodiest PF01663.17 gi|313127202|ref|YP_004037472.1| - 1e-58 199.4 0.1 1.2e-58 199.2 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|313127202|ref|YP_004037472.1| - 0.029 13.7 0.0 0.098 12.0 0.0 1.8 2 0 0 2 2 2 0 Metalloenzyme superfamily DUF2063 PF09836.4 gi|313127202|ref|YP_004037472.1| - 0.036 14.0 0.1 0.077 12.9 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) Sulfatase PF00884.18 gi|313127202|ref|YP_004037472.1| - 0.19 10.9 1.8 0.85 8.7 0.8 2.3 2 1 0 2 2 2 0 Sulfatase PTPlike_phytase PF14566.1 gi|313127203|ref|YP_004037473.1| - 0.075 13.0 0.5 0.09 12.8 0.4 1.2 1 0 0 1 1 1 0 Inositol hexakisphosphate FAM104 PF15434.1 gi|313127203|ref|YP_004037473.1| - 0.12 12.5 1.3 0.45 10.7 0.5 2.1 2 1 1 3 3 3 0 Family 104 DNA_pol_B_thumb PF14791.1 gi|313127204|ref|YP_004037474.1| - 3e-25 87.7 0.0 8.2e-25 86.2 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|313127204|ref|YP_004037474.1| - 1.8e-20 72.8 2.2 5.6e-16 58.4 0.1 3.5 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|313127204|ref|YP_004037474.1| - 3.6e-20 71.8 2.2 5.3e-12 45.7 0.1 3.5 4 0 0 4 4 4 2 Helix-hairpin-helix domain PHP PF02811.14 gi|313127204|ref|YP_004037474.1| - 3.4e-14 53.0 0.0 1.1e-13 51.3 0.0 1.9 1 1 0 1 1 1 1 PHP domain HHH_2 PF12826.2 gi|313127204|ref|YP_004037474.1| - 1.7e-08 34.2 0.4 0.0014 18.4 0.0 3.2 2 1 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|313127204|ref|YP_004037474.1| - 6.1e-05 22.4 0.0 0.00026 20.4 0.0 2.2 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|313127204|ref|YP_004037474.1| - 0.00033 20.1 1.0 0.013 15.1 0.1 3.4 2 1 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|313127204|ref|YP_004037474.1| - 0.00038 20.4 0.1 0.0027 17.7 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase beta palm HHH_3 PF12836.2 gi|313127204|ref|YP_004037474.1| - 0.056 13.3 0.1 38 4.3 0.0 3.4 2 1 0 2 2 2 0 Helix-hairpin-helix motif Mut7-C PF01927.11 gi|313127205|ref|YP_004037475.1| - 1.3e-41 142.0 0.0 1.5e-41 141.8 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain Glyco_tranf_2_4 PF13704.1 gi|313127205|ref|YP_004037475.1| - 0.002 18.3 0.0 0.0036 17.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 RNA_pol_N PF01194.12 gi|313127205|ref|YP_004037475.1| - 0.058 13.4 0.5 11 6.1 0.1 2.4 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit zf-UBP PF02148.14 gi|313127205|ref|YP_004037475.1| - 0.14 12.2 0.4 0.23 11.5 0.3 1.3 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein A2L_zn_ribbon PF08792.5 gi|313127205|ref|YP_004037475.1| - 0.14 11.6 0.3 22 4.6 0.0 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|313127205|ref|YP_004037475.1| - 0.17 11.8 0.5 7.2 6.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Virul_fac_BrkB PF03631.10 gi|313127206|ref|YP_004037476.1| - 3.1e-06 26.7 3.8 3.1e-06 26.7 2.6 1.8 1 1 1 2 2 2 1 Virulence factor BrkB HCV_NS4a PF01006.15 gi|313127206|ref|YP_004037476.1| - 0.085 12.4 0.4 0.085 12.4 0.2 2.6 2 1 1 3 3 3 0 Hepatitis C virus non-structural protein NS4a TctB PF07331.6 gi|313127206|ref|YP_004037476.1| - 0.11 12.1 12.3 0.7 9.5 8.5 2.2 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2512 PF10710.4 gi|313127206|ref|YP_004037476.1| - 0.18 11.2 0.3 0.34 10.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) DUF3040 PF11239.3 gi|313127206|ref|YP_004037476.1| - 2.9 8.0 15.3 67 3.6 9.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3040) Macoilin PF09726.4 gi|313127206|ref|YP_004037476.1| - 4.8 5.3 6.3 6.1 5.0 4.4 1.0 1 0 0 1 1 1 0 Transmembrane protein MDFI PF15316.1 gi|313127206|ref|YP_004037476.1| - 5.5 6.9 7.2 9 6.2 5.0 1.2 1 0 0 1 1 1 0 MyoD family inhibitor Abi PF02517.11 gi|313127208|ref|YP_004037478.1| - 6.4e-07 29.4 0.2 1.4e-06 28.3 0.1 1.8 1 1 0 1 1 1 1 CAAX protease self-immunity DUF302 PF03625.9 gi|313127209|ref|YP_004037479.1| - 1.3e-18 66.3 0.0 1.9e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 HTH_10 PF04967.7 gi|313127210|ref|YP_004037480.1| - 3.2e-17 61.8 0.0 4.9e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|313127210|ref|YP_004037480.1| - 0.0011 18.3 0.0 0.0021 17.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313127210|ref|YP_004037480.1| - 0.0029 17.2 0.1 0.0087 15.7 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|313127210|ref|YP_004037480.1| - 0.0031 17.0 0.3 0.0086 15.5 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313127210|ref|YP_004037480.1| - 0.052 12.8 0.4 0.15 11.4 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|313127210|ref|YP_004037480.1| - 0.066 12.6 0.2 0.14 11.6 0.1 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|313127211|ref|YP_004037481.1| - 0.001 18.8 0.4 0.014 15.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain DUF650 PF04894.7 gi|313127212|ref|YP_004037482.1| - 5.5e-101 337.6 0.0 6.6e-101 337.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|313127212|ref|YP_004037482.1| - 1.6e-32 111.4 0.0 2.7e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) TFIIB PF00382.14 gi|313127213|ref|YP_004037483.1| - 4.8e-48 160.8 2.1 8.5e-25 86.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|313127213|ref|YP_004037483.1| - 6.2e-05 22.2 0.1 0.00013 21.2 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|313127213|ref|YP_004037483.1| - 0.011 15.4 0.4 0.61 9.8 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain HARE-HTH PF05066.8 gi|313127213|ref|YP_004037483.1| - 0.07 13.4 0.1 2.6 8.4 0.0 2.3 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Cyclin_C PF02984.14 gi|313127213|ref|YP_004037483.1| - 0.072 13.0 0.0 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|313127213|ref|YP_004037483.1| - 0.11 12.0 0.0 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain Sigma70_r4 PF04545.11 gi|313127213|ref|YP_004037483.1| - 0.31 10.3 0.1 0.31 10.3 0.0 3.3 4 1 0 4 4 4 0 Sigma-70, region 4 RVT_3 PF13456.1 gi|313127214|ref|YP_004037484.1| - 3.6e-22 77.9 0.0 6.1e-22 77.2 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|313127214|ref|YP_004037484.1| - 2.8e-15 56.8 0.0 4.4e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 RNase H Mac PF12464.3 gi|313127214|ref|YP_004037484.1| - 0.011 15.7 0.2 0.029 14.3 0.0 1.8 2 0 0 2 2 2 0 Maltose acetyltransferase BDV_P10 PF06515.6 gi|313127215|ref|YP_004037485.1| - 0.11 12.3 0.7 0.18 11.6 0.5 1.4 1 0 0 1 1 1 0 Borna disease virus P10 protein PadR PF03551.9 gi|313127216|ref|YP_004037486.1| - 6.9e-17 60.9 0.4 9.6e-17 60.5 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313127216|ref|YP_004037486.1| - 3.7e-06 27.1 0.0 6.7e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|313127216|ref|YP_004037486.1| - 0.00059 19.6 0.1 0.00092 18.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|313127216|ref|YP_004037486.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) FUR PF01475.14 gi|313127216|ref|YP_004037486.1| - 0.013 15.4 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_34 PF13601.1 gi|313127216|ref|YP_004037486.1| - 0.05 13.6 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF505 PF04458.7 gi|313127216|ref|YP_004037486.1| - 0.084 10.9 0.2 0.095 10.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF1495 PF07381.6 gi|313127216|ref|YP_004037486.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Pyrophosphatase PF00719.14 gi|313127217|ref|YP_004037487.1| - 4.3e-54 182.1 1.7 5e-54 181.9 1.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Rhomboid PF01694.17 gi|313127219|ref|YP_004037489.1| - 1.2e-23 83.7 14.3 1.2e-23 83.7 9.9 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|313127219|ref|YP_004037489.1| - 4.1e-14 52.1 8.4 5.7e-14 51.7 5.8 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|313127219|ref|YP_004037489.1| - 0.0039 17.4 0.8 0.0087 16.3 0.3 1.9 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|313127219|ref|YP_004037489.1| - 0.051 13.4 1.7 0.076 12.9 1.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.11 gi|313127219|ref|YP_004037489.1| - 0.42 10.2 4.5 0.67 9.6 3.1 1.3 1 0 0 1 1 1 0 HIT zinc finger zf-C2H2_6 PF13912.1 gi|313127219|ref|YP_004037489.1| - 1.4 8.8 6.9 1.9 8.4 1.5 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Endonuclease_5 PF04493.9 gi|313127220|ref|YP_004037490.1| - 1.2e-46 158.6 0.0 1.7e-46 158.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V adh_short PF00106.20 gi|313127221|ref|YP_004037491.1| - 1.3e-33 116.2 0.0 1.8e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313127221|ref|YP_004037491.1| - 1e-17 64.7 0.0 1.3e-17 64.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313127221|ref|YP_004037491.1| - 2.2e-13 50.2 0.0 4.6e-13 49.2 0.0 1.6 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|313127221|ref|YP_004037491.1| - 1.5e-06 28.3 0.1 3.4e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|313127221|ref|YP_004037491.1| - 7.7e-06 25.5 0.0 1.5e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|313127221|ref|YP_004037491.1| - 5.8e-05 22.7 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF1776 PF08643.5 gi|313127221|ref|YP_004037491.1| - 0.00014 21.1 0.0 0.00018 20.7 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) RmlD_sub_bind PF04321.12 gi|313127221|ref|YP_004037491.1| - 0.00036 19.5 0.0 0.00059 18.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain ArsA_ATPase PF02374.10 gi|313127222|ref|YP_004037492.1| - 6.2e-78 261.9 0.0 1.3e-52 178.7 0.0 2.5 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|313127222|ref|YP_004037492.1| - 7.7e-10 38.4 0.0 3.1e-09 36.5 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313127222|ref|YP_004037492.1| - 2.7e-05 24.1 0.1 0.0016 18.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|313127222|ref|YP_004037492.1| - 0.002 17.5 3.6 0.022 14.1 0.1 3.2 2 1 0 3 3 3 1 AAA domain PhoH PF02562.11 gi|313127222|ref|YP_004037492.1| - 0.0027 16.9 0.0 0.0049 16.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein SRP54 PF00448.17 gi|313127222|ref|YP_004037492.1| - 0.0087 15.5 0.2 0.5 9.7 0.3 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|313127222|ref|YP_004037492.1| - 0.016 14.2 0.4 0.072 12.1 0.1 2.0 2 0 0 2 2 2 0 Zeta toxin Fer4_NifH PF00142.13 gi|313127222|ref|YP_004037492.1| - 0.062 12.4 0.1 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|313127222|ref|YP_004037492.1| - 0.097 12.0 0.1 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 YhjQ protein IstB_IS21 PF01695.12 gi|313127222|ref|YP_004037492.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein CinA PF02464.12 gi|313127223|ref|YP_004037493.1| - 4.4e-60 201.6 0.2 4.9e-60 201.4 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein DUF457 PF04307.9 gi|313127224|ref|YP_004037494.1| - 5.9e-20 71.1 4.9 7.9e-20 70.7 3.4 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|313127224|ref|YP_004037494.1| - 0.0067 16.1 0.1 0.0082 15.8 0.0 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.1 gi|313127226|ref|YP_004037496.1| - 9.4e-17 60.2 0.0 1.8e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 PHP-associated FYVE PF01363.16 gi|313127227|ref|YP_004037497.1| - 0.022 14.6 0.2 0.028 14.3 0.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger Nudix_N_2 PF14803.1 gi|313127227|ref|YP_004037497.1| - 0.08 12.6 0.5 0.19 11.4 0.4 1.6 1 0 0 1 1 1 0 Nudix N-terminal AP-5_subunit_s1 PF15001.1 gi|313127227|ref|YP_004037497.1| - 0.17 11.8 0.2 0.17 11.8 0.2 1.3 2 0 0 2 2 2 0 AP-5 complex subunit sigma-1 Spt5-NGN PF03439.8 gi|313127228|ref|YP_004037498.1| - 1.6e-23 82.2 0.1 2.6e-23 81.5 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|313127228|ref|YP_004037498.1| - 1e-07 31.3 0.7 2.6e-07 30.1 0.2 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|313127228|ref|YP_004037498.1| - 0.0009 19.4 0.0 0.014 15.6 0.0 2.3 1 1 0 1 1 1 1 Transcription termination factor nusG NapD PF03927.8 gi|313127228|ref|YP_004037498.1| - 0.043 13.6 0.5 0.11 12.3 0.3 1.7 1 0 0 1 1 1 0 NapD protein DUF1469 PF07332.6 gi|313127229|ref|YP_004037499.1| - 0.054 13.2 2.7 0.064 12.9 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) FtsZ_C PF12327.3 gi|313127230|ref|YP_004037500.1| - 5.6e-37 125.7 2.8 8.2e-37 125.1 0.9 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|313127230|ref|YP_004037500.1| - 1.6e-36 126.1 0.4 3.6e-36 124.9 0.3 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|313127230|ref|YP_004037500.1| - 4.9 5.9 7.6 4.5 6.1 2.2 2.2 1 1 1 2 2 2 0 Tubulin like tRNA_deacylase PF04414.7 gi|313127231|ref|YP_004037501.1| - 7.9e-62 208.1 0.0 1.2e-61 207.5 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Na_Ca_ex PF01699.19 gi|313127232|ref|YP_004037502.1| - 1.5e-17 63.5 20.9 2.3e-09 36.9 2.9 3.3 3 1 1 4 4 4 2 Sodium/calcium exchanger protein Na_Ca_ex PF01699.19 gi|313127233|ref|YP_004037503.1| - 3.9e-45 152.8 31.1 1.7e-23 82.7 6.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF3278 PF11683.3 gi|313127233|ref|YP_004037503.1| - 0.11 12.4 0.1 0.51 10.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3278) Shikimate_dh_N PF08501.6 gi|313127234|ref|YP_004037504.1| - 1.8e-27 95.1 0.0 3.8e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|313127234|ref|YP_004037504.1| - 8.6e-12 45.3 0.0 1.4e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.19 gi|313127234|ref|YP_004037504.1| - 0.00099 18.0 4.4 0.00099 18.0 3.1 1.4 2 0 0 2 2 2 1 FAD binding domain THF_DHG_CYH_C PF02882.14 gi|313127234|ref|YP_004037504.1| - 0.002 17.2 0.0 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thi4 PF01946.12 gi|313127234|ref|YP_004037504.1| - 0.0046 16.0 0.1 0.0068 15.5 0.1 1.3 1 0 0 1 1 1 1 Thi4 family F420_oxidored PF03807.12 gi|313127234|ref|YP_004037504.1| - 0.0094 16.3 0.9 0.019 15.4 0.6 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|313127234|ref|YP_004037504.1| - 0.012 15.5 1.2 0.02 14.7 0.8 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|313127234|ref|YP_004037504.1| - 0.012 14.9 0.1 0.021 14.1 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GIDA PF01134.17 gi|313127234|ref|YP_004037504.1| - 0.016 14.1 2.2 0.02 13.7 1.5 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A ApbA PF02558.11 gi|313127234|ref|YP_004037504.1| - 0.018 14.4 0.3 0.03 13.7 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|313127234|ref|YP_004037504.1| - 0.025 14.8 0.2 0.046 13.9 0.1 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|313127234|ref|YP_004037504.1| - 0.047 13.5 0.1 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|313127234|ref|YP_004037504.1| - 0.078 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Malic_M PF03949.10 gi|313127234|ref|YP_004037504.1| - 0.1 12.1 0.9 0.16 11.4 0.6 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain NAD_binding_8 PF13450.1 gi|313127234|ref|YP_004037504.1| - 0.13 12.2 1.1 0.32 11.0 0.7 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|313127234|ref|YP_004037504.1| - 0.15 11.6 1.1 0.24 11.0 0.8 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|313127234|ref|YP_004037504.1| - 0.19 10.1 1.7 0.25 9.7 1.2 1.1 1 0 0 1 1 1 0 HI0933-like protein HHH_5 PF14520.1 gi|313127235|ref|YP_004037505.1| - 8.5e-09 35.4 0.1 8.5e-09 35.4 0.1 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|313127235|ref|YP_004037505.1| - 0.00014 21.8 0.0 0.00046 20.1 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|313127235|ref|YP_004037505.1| - 0.00031 20.2 0.0 0.00059 19.3 0.0 1.4 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|313127235|ref|YP_004037505.1| - 0.00073 19.4 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.8 gi|313127235|ref|YP_004037505.1| - 0.0092 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 TfoX C-terminal domain HTH_Tnp_ISL3 PF13542.1 gi|313127235|ref|YP_004037505.1| - 0.086 12.0 0.1 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FluMu_gp41 PF10109.4 gi|313127235|ref|YP_004037505.1| - 0.66 9.9 4.3 0.16 11.9 0.2 2.1 2 1 0 2 2 2 0 Mu-like prophage FluMu protein gp41 Chorismate_bind PF00425.13 gi|313127236|ref|YP_004037506.1| - 4e-99 331.0 0.0 5.4e-99 330.6 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|313127236|ref|YP_004037506.1| - 3.9e-19 69.0 0.0 8.6e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|313127237|ref|YP_004037507.1| - 3.5e-48 163.6 0.0 3.9e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313127237|ref|YP_004037507.1| - 2.8e-07 30.2 0.0 6.2e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.14 gi|313127238|ref|YP_004037508.1| - 6.6e-46 156.6 0.0 9e-46 156.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Rieske PF00355.21 gi|313127239|ref|YP_004037509.1| - 5.2e-09 35.5 0.0 6.8e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|313127239|ref|YP_004037509.1| - 0.057 13.1 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain GtrA PF04138.9 gi|313127240|ref|YP_004037510.1| - 2.1e-15 56.7 9.1 2.8e-15 56.3 6.3 1.2 1 0 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.21 gi|313127241|ref|YP_004037511.1| - 3.1e-06 26.9 0.0 5.6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2298 PF10060.4 gi|313127242|ref|YP_004037512.1| - 3.6e-125 418.4 27.5 4.5e-125 418.1 19.1 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Ribosomal_L44 PF00935.14 gi|313127245|ref|YP_004037515.1| - 4.5e-25 87.4 1.9 5.5e-25 87.1 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.1 gi|313127245|ref|YP_004037515.1| - 0.024 13.8 1.0 3.9 6.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|313127245|ref|YP_004037515.1| - 0.041 13.2 1.4 5.6 6.3 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|313127245|ref|YP_004037515.1| - 0.042 14.1 0.4 0.12 12.7 0.3 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF1272 PF06906.6 gi|313127245|ref|YP_004037515.1| - 0.053 13.3 0.5 0.93 9.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF2296 PF10058.4 gi|313127245|ref|YP_004037515.1| - 0.06 13.1 0.6 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Terminase_GpA PF05876.7 gi|313127245|ref|YP_004037515.1| - 0.078 11.3 0.3 0.099 10.9 0.2 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Nudix_N_2 PF14803.1 gi|313127245|ref|YP_004037515.1| - 0.097 12.3 2.6 3 7.5 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal DZR PF12773.2 gi|313127245|ref|YP_004037515.1| - 0.099 12.4 2.6 1 9.2 1.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|313127245|ref|YP_004037515.1| - 0.14 12.5 1.0 7.8 7.0 0.1 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Zn-ribbon_8 PF09723.5 gi|313127245|ref|YP_004037515.1| - 0.23 11.4 1.6 15 5.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|313127245|ref|YP_004037515.1| - 0.38 10.3 3.6 5.8 6.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.19 gi|313127245|ref|YP_004037515.1| - 0.64 9.9 6.3 7.1 6.6 0.1 2.2 2 0 0 2 2 2 0 B-box zinc finger Ribosomal_S27e PF01667.12 gi|313127246|ref|YP_004037516.1| - 2e-19 68.8 0.5 2.2e-19 68.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|313127246|ref|YP_004037516.1| - 0.0093 15.9 0.3 0.015 15.2 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Baculo_ME53 PF06061.6 gi|313127246|ref|YP_004037516.1| - 0.071 12.0 0.6 0.083 11.8 0.4 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 A2L_zn_ribbon PF08792.5 gi|313127246|ref|YP_004037516.1| - 0.13 11.7 3.1 0.27 10.7 2.1 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|313127246|ref|YP_004037516.1| - 0.14 11.3 1.6 0.24 10.6 1.1 1.4 1 1 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.2 gi|313127246|ref|YP_004037516.1| - 0.3 10.7 3.1 0.57 9.8 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) EIF_2_alpha PF07541.7 gi|313127247|ref|YP_004037517.1| - 8.3e-30 102.8 0.1 1.5e-29 102.0 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|313127247|ref|YP_004037517.1| - 1.3e-14 53.9 2.3 1.5e-14 53.8 0.5 1.8 2 0 0 2 2 2 1 S1 RNA binding domain Nop10p PF04135.7 gi|313127248|ref|YP_004037518.1| - 3.8e-25 87.3 0.3 4.2e-25 87.2 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|313127248|ref|YP_004037518.1| - 0.036 13.2 0.7 0.069 12.3 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|313127248|ref|YP_004037518.1| - 0.053 13.2 0.5 0.093 12.4 0.3 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Jun PF03957.8 gi|313127248|ref|YP_004037518.1| - 0.074 12.7 0.0 0.077 12.7 0.0 1.0 1 0 0 1 1 1 0 Jun-like transcription factor PAC2 PF09754.4 gi|313127249|ref|YP_004037519.1| - 7.2e-52 176.4 0.4 8.7e-52 176.1 0.3 1.0 1 0 0 1 1 1 1 PAC2 family HTH_20 PF12840.2 gi|313127250|ref|YP_004037520.1| - 0.002 17.9 0.3 0.0039 16.9 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313127250|ref|YP_004037520.1| - 0.007 16.0 1.6 0.33 10.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family PhzC-PhzF PF02567.11 gi|313127251|ref|YP_004037521.1| - 6e-64 215.9 0.3 6.7e-64 215.8 0.2 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|313127251|ref|YP_004037521.1| - 0.0053 16.6 0.2 0.02 14.7 0.1 2.0 2 0 0 2 2 2 1 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|313127251|ref|YP_004037521.1| - 0.006 15.4 0.0 0.0093 14.8 0.0 1.2 1 0 0 1 1 1 1 Proline racemase Desulfoferrod_N PF06397.7 gi|313127252|ref|YP_004037522.1| - 0.0001 21.5 0.8 0.088 12.2 0.0 2.1 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|313127252|ref|YP_004037522.1| - 0.04 13.1 3.6 0.074 12.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|313127252|ref|YP_004037522.1| - 0.05 13.2 1.8 0.23 11.1 1.2 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|313127252|ref|YP_004037522.1| - 0.07 12.9 0.3 0.091 12.5 0.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|313127252|ref|YP_004037522.1| - 0.12 12.3 3.3 0.66 9.9 2.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain RNHCP PF12647.2 gi|313127252|ref|YP_004037522.1| - 0.14 12.0 0.2 0.2 11.4 0.2 1.3 1 1 0 1 1 1 0 RNHCP domain zf-RING_3 PF14369.1 gi|313127252|ref|YP_004037522.1| - 0.15 12.0 3.1 2.8 8.0 2.1 2.1 1 1 0 1 1 1 0 zinc-finger PhnA_Zn_Ribbon PF08274.7 gi|313127252|ref|YP_004037522.1| - 0.27 11.0 2.3 1.6 8.5 1.6 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-DNL PF05180.7 gi|313127252|ref|YP_004037522.1| - 0.37 10.5 2.0 0.99 9.1 1.4 1.7 1 1 0 1 1 1 0 DNL zinc finger DUF1610 PF07754.6 gi|313127252|ref|YP_004037522.1| - 0.37 10.9 5.1 1.2 9.3 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TFIIS_C PF01096.13 gi|313127252|ref|YP_004037522.1| - 0.72 9.5 3.0 5.1 6.8 0.4 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Sgf11 PF08209.6 gi|313127252|ref|YP_004037522.1| - 2.6 7.4 4.5 5.2 6.4 0.2 2.2 2 1 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Pribosyltran PF00156.22 gi|313127253|ref|YP_004037523.1| - 1.1e-19 70.4 0.0 1.6e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|313127253|ref|YP_004037523.1| - 0.0095 15.1 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HD_3 PF13023.1 gi|313127254|ref|YP_004037524.1| - 3.8e-28 98.2 0.0 5.1e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|313127254|ref|YP_004037524.1| - 6.4e-08 32.6 0.0 1.3e-07 31.6 0.0 1.5 1 1 0 1 1 1 1 HD domain Antibiotic_NAT PF02522.9 gi|313127254|ref|YP_004037524.1| - 0.093 11.9 0.0 0.26 10.4 0.0 1.7 1 1 1 2 2 2 0 Aminoglycoside 3-N-acetyltransferase HDOD PF08668.7 gi|313127254|ref|YP_004037524.1| - 0.16 11.1 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 HDOD domain Mem_trans PF03547.13 gi|313127255|ref|YP_004037525.1| - 2.7e-29 101.6 22.9 5.8e-15 54.4 8.8 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF1467 PF07330.7 gi|313127255|ref|YP_004037525.1| - 0.021 14.6 0.6 0.021 14.6 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1467) Flavi_NS4A PF01350.12 gi|313127255|ref|YP_004037525.1| - 0.98 8.9 12.2 0.19 11.2 1.1 2.6 2 0 0 2 2 2 0 Flavivirus non-structural protein NS4A PNP_UDP_1 PF01048.15 gi|313127256|ref|YP_004037526.1| - 4.9e-43 146.7 0.0 5.8e-43 146.5 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Peripla_BP_2 PF01497.13 gi|313127257|ref|YP_004037527.1| - 5.8e-14 51.8 0.0 9.6e-14 51.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FlgI PF02119.11 gi|313127257|ref|YP_004037527.1| - 0.23 10.0 0.0 0.3 9.6 0.0 1.1 1 0 0 1 1 1 0 Flagellar P-ring protein DUF1924 PF09086.6 gi|313127258|ref|YP_004037528.1| - 0.011 15.8 2.2 0.072 13.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1924) Cytochrome_C7 PF14522.1 gi|313127258|ref|YP_004037528.1| - 0.35 10.5 2.7 0.84 9.3 1.9 1.6 1 1 0 1 1 1 0 Cytochrome c7 Prim_Zn_Ribbon PF08273.7 gi|313127258|ref|YP_004037528.1| - 1.7 8.8 7.7 0.89 9.6 0.6 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase RRN7 PF11781.3 gi|313127258|ref|YP_004037528.1| - 4 7.0 7.3 1.9 8.0 0.0 2.9 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 ScpA_ScpB PF02616.9 gi|313127259|ref|YP_004037529.1| - 1.2e-24 87.2 0.0 3.9e-24 85.5 0.0 1.8 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|313127260|ref|YP_004037530.1| - 3.9e-49 166.8 47.2 7.8e-49 165.8 32.7 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|313127260|ref|YP_004037530.1| - 3.5e-29 101.2 0.0 1.5e-28 99.1 0.0 2.2 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|313127260|ref|YP_004037530.1| - 7.4e-16 57.7 102.0 6.7e-06 24.8 18.7 6.3 3 2 3 6 6 6 5 AAA domain AAA_21 PF13304.1 gi|313127260|ref|YP_004037530.1| - 1.1e-12 48.5 0.9 8e-08 32.5 0.1 4.5 3 2 0 3 3 2 2 AAA domain CENP-F_leu_zip PF10473.4 gi|313127260|ref|YP_004037530.1| - 3.3e-12 46.4 153.6 1.9e-05 24.5 11.4 8.9 2 2 7 9 9 8 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Reo_sigmaC PF04582.7 gi|313127260|ref|YP_004037530.1| - 1.4e-11 44.2 32.6 0.00029 20.1 2.4 6.1 2 2 4 6 6 6 5 Reovirus sigma C capsid protein Myosin_tail_1 PF01576.14 gi|313127260|ref|YP_004037530.1| - 4.3e-09 34.7 161.0 1.1e-05 23.4 51.5 3.4 2 1 1 3 3 3 3 Myosin tail IncA PF04156.9 gi|313127260|ref|YP_004037530.1| - 1.4e-08 34.5 154.7 0.0022 17.6 8.9 8.9 2 2 6 8 8 8 5 IncA protein Spc7 PF08317.6 gi|313127260|ref|YP_004037530.1| - 3.6e-08 32.4 122.8 0.00031 19.4 11.4 7.8 2 2 4 7 7 7 5 Spc7 kinetochore protein WEMBL PF05701.6 gi|313127260|ref|YP_004037530.1| - 5.4e-07 28.4 37.1 5.4e-07 28.4 25.7 6.1 2 2 3 5 5 4 3 Weak chloroplast movement under blue light GAS PF13851.1 gi|313127260|ref|YP_004037530.1| - 2.5e-06 26.8 118.2 0.006 15.8 16.6 6.4 2 2 3 5 5 5 4 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.7 gi|313127260|ref|YP_004037530.1| - 2.1e-05 24.3 30.1 0.0087 15.8 1.2 7.2 3 2 4 7 7 7 1 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.5 gi|313127260|ref|YP_004037530.1| - 2.9e-05 24.2 5.3 2.9e-05 24.2 3.7 7.1 3 2 3 7 7 7 2 Fibrinogen alpha/beta chain family AAA_29 PF13555.1 gi|313127260|ref|YP_004037530.1| - 3.3e-05 23.3 0.0 8.8e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.3 gi|313127260|ref|YP_004037530.1| - 6.3e-05 20.5 48.9 6.3e-05 20.5 33.9 4.7 2 2 1 3 3 3 1 Protein of unknown function (DUF3584) TBPIP PF07106.8 gi|313127260|ref|YP_004037530.1| - 8.1e-05 22.2 113.2 0.019 14.5 6.0 8.8 2 2 7 9 9 9 5 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ATG16 PF08614.6 gi|313127260|ref|YP_004037530.1| - 0.0001 22.1 125.2 0.0015 18.3 8.6 9.3 2 2 6 8 8 8 4 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|313127260|ref|YP_004037530.1| - 0.00023 20.8 12.8 0.00023 20.8 8.9 11.7 3 2 9 13 13 13 2 TATA element modulatory factor 1 DNA binding MscS_porin PF12795.2 gi|313127260|ref|YP_004037530.1| - 0.00059 19.2 99.3 0.0071 15.6 3.1 5.6 3 2 2 5 5 5 2 Mechanosensitive ion channel porin domain DUF4200 PF13863.1 gi|313127260|ref|YP_004037530.1| - 0.00072 19.4 147.1 0.0044 16.9 8.6 10.5 3 2 7 10 10 10 3 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|313127260|ref|YP_004037530.1| - 0.0013 18.4 78.8 0.061 13.0 2.4 8.8 3 2 4 9 9 9 4 Laminin Domain II Cast PF10174.4 gi|313127260|ref|YP_004037530.1| - 0.0016 16.6 61.0 0.0016 16.6 42.3 4.5 2 2 1 3 3 3 1 RIM-binding protein of the cytomatrix active zone Filament PF00038.16 gi|313127260|ref|YP_004037530.1| - 0.0026 17.3 128.2 0.029 13.8 37.2 6.6 2 2 3 5 5 5 2 Intermediate filament protein FliJ PF02050.11 gi|313127260|ref|YP_004037530.1| - 0.0033 17.4 92.9 0.0067 16.4 3.8 9.1 4 2 4 9 9 9 5 Flagellar FliJ protein DUF3450 PF11932.3 gi|313127260|ref|YP_004037530.1| - 0.006 15.8 8.5 0.006 15.8 5.9 8.0 2 2 6 8 8 7 2 Protein of unknown function (DUF3450) AAA_23 PF13476.1 gi|313127260|ref|YP_004037530.1| - 0.006 16.9 132.3 0.3 11.3 40.5 8.1 2 2 1 3 3 1 1 AAA domain DUF1664 PF07889.7 gi|313127260|ref|YP_004037530.1| - 0.0062 16.3 6.7 0.0062 16.3 4.7 9.2 4 3 6 11 11 10 4 Protein of unknown function (DUF1664) DUF869 PF05911.6 gi|313127260|ref|YP_004037530.1| - 0.0066 14.7 117.0 0.12 10.6 22.1 5.8 2 2 2 4 4 4 2 Plant protein of unknown function (DUF869) bZIP_1 PF00170.16 gi|313127260|ref|YP_004037530.1| - 0.0086 16.0 1.4 0.0086 16.0 0.9 13.1 6 5 7 15 15 14 2 bZIP transcription factor APG6 PF04111.7 gi|313127260|ref|YP_004037530.1| - 0.013 14.6 139.2 0.012 14.6 14.0 7.7 2 2 7 9 9 9 0 Autophagy protein Apg6 Seryl_tRNA_N PF02403.17 gi|313127260|ref|YP_004037530.1| - 0.028 14.4 124.0 0.023 14.7 6.2 10.3 2 2 7 11 11 11 0 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|313127260|ref|YP_004037530.1| - 0.041 12.8 102.2 0.066 12.1 10.8 6.3 2 2 5 7 7 6 0 UV radiation resistance protein and autophagy-related subunit 14 NPV_P10 PF05531.7 gi|313127260|ref|YP_004037530.1| - 0.051 13.8 63.0 0.017 15.3 3.3 10.7 6 3 4 10 10 10 0 Nucleopolyhedrovirus P10 protein Laminin_I PF06008.9 gi|313127260|ref|YP_004037530.1| - 0.056 12.7 96.4 0.018 14.3 8.4 6.4 2 2 4 6 6 6 0 Laminin Domain I Mnd1 PF03962.10 gi|313127260|ref|YP_004037530.1| - 0.063 12.9 120.0 0.12 11.9 9.2 8.6 2 2 6 9 9 9 0 Mnd1 family DUF4201 PF13870.1 gi|313127260|ref|YP_004037530.1| - 0.064 12.6 104.9 0.048 13.0 3.9 8.2 2 2 5 8 8 7 0 Domain of unknown function (DUF4201) FliD_N PF02465.13 gi|313127260|ref|YP_004037530.1| - 0.086 13.2 33.3 1 9.7 0.5 8.5 4 3 5 9 9 9 0 Flagellar hook-associated protein 2 N-terminus AAA_27 PF13514.1 gi|313127260|ref|YP_004037530.1| - 0.1 10.2 126.9 0.08 10.6 24.0 4.3 2 2 2 4 4 4 0 AAA domain M_domain PF12938.2 gi|313127260|ref|YP_004037530.1| - 0.16 11.7 0.9 28 4.4 0.0 3.4 3 0 0 3 3 3 0 M domain of GW182 BLOC1_2 PF10046.4 gi|313127260|ref|YP_004037530.1| - 0.43 10.7 84.8 0.065 13.3 0.5 10.6 3 2 6 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.7 gi|313127260|ref|YP_004037530.1| - 0.63 9.3 118.8 0.01 15.2 12.2 8.5 2 2 6 8 8 8 0 PspA/IM30 family TPR_MLP1_2 PF07926.7 gi|313127260|ref|YP_004037530.1| - 1 9.1 128.5 0.012 15.3 12.0 7.6 3 2 3 6 6 6 0 TPR/MLP1/MLP2-like protein AAA_15 PF13175.1 gi|313127260|ref|YP_004037530.1| - 1.5 7.7 29.9 0.45 9.4 10.6 4.7 2 2 1 3 3 3 0 AAA ATPase domain ERM PF00769.14 gi|313127260|ref|YP_004037530.1| - 2.3 7.6 144.9 0.11 12.0 16.4 6.7 2 2 3 6 6 6 0 Ezrin/radixin/moesin family DUF948 PF06103.6 gi|313127260|ref|YP_004037530.1| - 3.8 7.4 38.5 0.039 13.8 1.0 8.0 2 2 5 9 9 9 0 Bacterial protein of unknown function (DUF948) DUF812 PF05667.6 gi|313127260|ref|YP_004037530.1| - 4.2 5.7 121.7 0.011 14.2 10.2 6.0 3 2 3 6 6 6 0 Protein of unknown function (DUF812) EzrA PF06160.7 gi|313127260|ref|YP_004037530.1| - 5 5.1 109.0 0.14 10.2 18.0 5.3 2 2 1 3 3 2 0 Septation ring formation regulator, EzrA GerPC PF10737.4 gi|313127261|ref|YP_004037531.1| - 0.0098 15.6 0.3 0.013 15.3 0.2 1.2 1 0 0 1 1 1 1 Spore germination protein GerPC FlaC_arch PF05377.6 gi|313127261|ref|YP_004037531.1| - 0.084 12.7 2.3 0.16 11.8 1.6 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) SlyX PF04102.7 gi|313127261|ref|YP_004037531.1| - 0.089 13.1 0.4 0.089 13.1 0.3 2.2 2 1 0 2 2 2 0 SlyX bZIP_1 PF00170.16 gi|313127261|ref|YP_004037531.1| - 0.16 11.9 2.2 0.27 11.2 1.5 1.4 1 0 0 1 1 1 0 bZIP transcription factor ATP-synt_D PF01813.12 gi|313127261|ref|YP_004037531.1| - 0.37 10.3 4.1 0.12 11.9 0.7 1.6 2 0 0 2 2 2 0 ATP synthase subunit D CENP-N PF05238.8 gi|313127261|ref|YP_004037531.1| - 0.39 9.7 4.3 0.39 9.7 3.0 1.1 1 0 0 1 1 1 0 Kinetochore protein CHL4 like DUF4407 PF14362.1 gi|313127261|ref|YP_004037531.1| - 1.2 8.0 8.5 1.4 7.8 5.9 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Raftlin PF15250.1 gi|313127261|ref|YP_004037531.1| - 1.6 7.1 5.5 2 6.8 3.8 1.1 1 0 0 1 1 1 0 Raftlin DivIC PF04977.10 gi|313127261|ref|YP_004037531.1| - 2.7 7.5 6.1 0.16 11.4 0.4 1.8 2 0 0 2 2 2 0 Septum formation initiator Striatin PF08232.7 gi|313127261|ref|YP_004037531.1| - 3.1 8.1 13.9 0.048 13.9 2.0 2.1 1 1 1 2 2 2 0 Striatin family Abhydrolase_3 PF07859.8 gi|313127262|ref|YP_004037532.1| - 1.5e-20 73.7 1.1 2.5e-20 72.9 0.8 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313127262|ref|YP_004037532.1| - 4.5e-16 58.9 0.8 5.6e-16 58.6 0.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|313127262|ref|YP_004037532.1| - 1.5e-10 40.6 0.0 1.1e-08 34.5 0.0 2.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|313127262|ref|YP_004037532.1| - 3.9e-10 39.9 10.1 9.2e-10 38.7 7.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|313127262|ref|YP_004037532.1| - 1.1e-08 34.2 0.0 2.4e-08 33.1 0.0 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_2 PF02230.11 gi|313127262|ref|YP_004037532.1| - 3.6e-07 29.8 0.0 0.0056 16.1 0.0 3.0 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.15 gi|313127262|ref|YP_004037532.1| - 0.0033 17.0 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|313127262|ref|YP_004037532.1| - 0.0068 15.8 0.0 0.034 13.5 0.0 2.1 2 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|313127262|ref|YP_004037532.1| - 0.029 13.6 0.0 0.37 10.0 0.0 2.3 2 1 0 2 2 2 0 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|313127262|ref|YP_004037532.1| - 0.038 13.8 0.0 0.08 12.7 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase DUF2099 PF09872.4 gi|313127262|ref|YP_004037532.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) Esterase_phd PF10503.4 gi|313127262|ref|YP_004037532.1| - 0.15 11.3 6.0 1 8.5 2.2 2.7 2 2 1 3 3 3 0 Esterase PHB depolymerase GatB_N PF02934.10 gi|313127263|ref|YP_004037533.1| - 4.4e-112 373.6 0.0 6.6e-112 373.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|313127263|ref|YP_004037533.1| - 1.6e-41 141.4 0.0 3e-41 140.5 0.0 1.5 1 0 0 1 1 1 1 GatB domain Nudix_N_2 PF14803.1 gi|313127264|ref|YP_004037534.1| - 0.011 15.4 1.0 1.9 8.2 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal zf-H2C2_2 PF13465.1 gi|313127264|ref|YP_004037534.1| - 0.019 15.2 1.1 1 9.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|313127264|ref|YP_004037534.1| - 0.059 13.3 2.5 0.17 11.8 1.7 1.7 1 1 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|313127264|ref|YP_004037534.1| - 0.08 12.4 1.7 1.5 8.3 0.3 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|313127264|ref|YP_004037534.1| - 0.11 12.1 0.1 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.3 gi|313127264|ref|YP_004037534.1| - 0.23 11.3 2.6 2.6 8.0 2.0 2.0 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.9 gi|313127264|ref|YP_004037534.1| - 1.4 8.6 3.4 9.1 6.0 2.4 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid MatE PF01554.13 gi|313127265|ref|YP_004037535.1| - 3.2e-64 215.4 29.7 3.6e-38 130.7 6.8 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|313127265|ref|YP_004037535.1| - 1.6e-09 37.7 19.6 5.9e-09 35.8 4.0 4.5 4 1 0 4 4 4 3 Polysaccharide biosynthesis C-terminal domain Topoisom_bac PF01131.15 gi|313127266|ref|YP_004037536.1| - 3.7e-116 388.2 0.0 4.9e-116 387.8 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|313127266|ref|YP_004037536.1| - 1.7e-18 65.7 9.3 5.5e-11 41.7 0.0 4.1 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|313127266|ref|YP_004037536.1| - 1.7e-17 63.1 0.0 3.8e-17 62.1 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|313127266|ref|YP_004037536.1| - 7.1e-12 45.3 0.9 3.3e-11 43.2 0.6 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|313127266|ref|YP_004037536.1| - 0.0001 21.8 0.9 0.00048 19.6 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|313127266|ref|YP_004037536.1| - 0.00079 19.2 0.0 0.003 17.4 0.0 1.9 1 0 0 1 1 1 1 Pathogenicity locus DUF3375 PF11855.3 gi|313127266|ref|YP_004037536.1| - 0.00081 18.2 0.4 0.0015 17.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) DNA_pol_lambd_f PF10391.4 gi|313127266|ref|YP_004037536.1| - 0.0019 17.7 0.0 0.025 14.1 0.0 2.6 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|313127266|ref|YP_004037536.1| - 0.017 15.0 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) IMS_HHH PF11798.3 gi|313127266|ref|YP_004037536.1| - 0.033 14.2 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 1 0 IMS family HHH motif Toprim_4 PF13662.1 gi|313127266|ref|YP_004037536.1| - 0.038 13.9 1.6 0.073 13.0 0.1 2.3 2 1 0 2 2 1 0 Toprim domain TfoX_C PF04994.8 gi|313127266|ref|YP_004037536.1| - 0.044 13.6 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain HHH_3 PF12836.2 gi|313127266|ref|YP_004037536.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|313127266|ref|YP_004037536.1| - 0.1 12.5 0.2 1.3 8.9 0.0 2.4 2 1 1 3 3 3 0 Helix-hairpin-helix motif BAF PF02961.9 gi|313127266|ref|YP_004037536.1| - 0.19 12.0 0.1 0.64 10.3 0.0 1.9 2 0 0 2 2 2 0 Barrier to autointegration factor HHH_8 PF14716.1 gi|313127266|ref|YP_004037536.1| - 0.56 10.4 3.2 1.2 9.3 0.2 2.9 3 1 1 4 4 2 0 Helix-hairpin-helix domain PcrB PF01884.12 gi|313127267|ref|YP_004037537.1| - 1.2e-50 171.9 0.1 1.5e-50 171.6 0.1 1.0 1 0 0 1 1 1 1 PcrB family CRF-BP PF05428.6 gi|313127267|ref|YP_004037537.1| - 0.088 11.6 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Corticotropin-releasing factor binding protein (CRF-BP) DUF4013 PF13197.1 gi|313127268|ref|YP_004037538.1| - 1.8e-16 59.9 9.5 1.8e-16 59.9 6.6 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) HCV_core PF01542.13 gi|313127268|ref|YP_004037538.1| - 1.9 8.9 6.8 9.9 6.6 1.4 2.7 2 0 0 2 2 2 0 Hepatitis C virus core protein tRNA-synt_2 PF00152.15 gi|313127269|ref|YP_004037539.1| - 2.2e-88 296.2 0.1 2.8e-88 295.9 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|313127269|ref|YP_004037539.1| - 4.1e-14 52.1 0.2 6.8e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|313127269|ref|YP_004037539.1| - 0.007 15.5 0.4 0.044 12.9 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) BOF PF04076.8 gi|313127269|ref|YP_004037539.1| - 0.14 11.9 0.1 0.55 10.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial OB fold (BOF) protein SHOCT PF09851.4 gi|313127270|ref|YP_004037540.1| - 1.6e-09 36.9 3.0 3.1e-09 35.9 2.1 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|313127270|ref|YP_004037540.1| - 3.5e-06 26.6 1.1 5.6e-06 26.0 0.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|313127270|ref|YP_004037540.1| - 1.9e-05 24.3 0.9 2.7e-05 23.9 0.6 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF4191 PF13829.1 gi|313127270|ref|YP_004037540.1| - 0.064 12.3 0.0 0.08 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) SpecificRecomb PF10136.4 gi|313127270|ref|YP_004037540.1| - 1.1 7.2 3.5 0.32 8.9 0.6 1.4 2 0 0 2 2 2 0 Site-specific recombinase GHMP_kinases_N PF00288.21 gi|313127271|ref|YP_004037541.1| - 1e-08 35.1 1.5 2.7e-08 33.7 0.4 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain FAD_binding_4 PF01565.18 gi|313127271|ref|YP_004037541.1| - 0.0091 15.4 0.2 0.017 14.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain DUF137 PF02006.11 gi|313127272|ref|YP_004037542.1| - 6e-75 250.5 4.1 7.2e-75 250.2 2.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|313127272|ref|YP_004037542.1| - 0.0046 16.1 0.0 0.0084 15.3 0.0 1.4 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) HTH_38 PF13936.1 gi|313127272|ref|YP_004037542.1| - 0.76 9.3 3.9 1.3 8.6 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain Oxidored_molyb PF00174.14 gi|313127273|ref|YP_004037543.1| - 1.6e-31 108.9 0.0 2.2e-31 108.5 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_B_N PF00033.14 gi|313127273|ref|YP_004037543.1| - 0.0003 20.2 9.8 0.077 12.3 0.4 2.3 1 1 1 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|313127273|ref|YP_004037543.1| - 0.0066 15.8 8.4 0.056 12.8 0.5 2.4 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 DUF420 PF04238.7 gi|313127273|ref|YP_004037543.1| - 1.3 8.9 5.1 7.9 6.4 3.5 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF420) GST_N_2 PF13409.1 gi|313127274|ref|YP_004037544.1| - 5.6e-24 83.9 0.2 6.5e-23 80.5 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|313127274|ref|YP_004037544.1| - 1.6e-12 47.1 0.1 4e-12 45.8 0.1 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|313127274|ref|YP_004037544.1| - 9.7e-09 35.1 0.1 3.1e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|313127274|ref|YP_004037544.1| - 7.7e-08 32.7 0.1 1.6e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|313127274|ref|YP_004037544.1| - 1.1e-07 32.0 0.0 1.3e-06 28.4 0.0 2.6 2 1 0 2 2 2 1 Glutathione S-transferase, N-terminal domain Thi4 PF01946.12 gi|313127275|ref|YP_004037545.1| - 7.9e-62 208.3 1.1 5.1e-49 166.4 0.2 2.6 3 0 0 3 3 3 2 Thi4 family DAO PF01266.19 gi|313127275|ref|YP_004037545.1| - 8.3e-10 38.0 0.9 1.1e-06 27.8 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313127275|ref|YP_004037545.1| - 9.2e-10 38.4 0.1 2.2e-09 37.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|313127275|ref|YP_004037545.1| - 3.4e-09 36.2 0.3 4.8e-09 35.7 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313127275|ref|YP_004037545.1| - 6.6e-09 35.1 2.7 1.3e-06 27.5 0.1 2.3 2 1 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.14 gi|313127275|ref|YP_004037545.1| - 4.3e-08 32.5 0.2 8.9e-08 31.5 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|313127275|ref|YP_004037545.1| - 2.9e-07 29.3 0.0 3.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|313127275|ref|YP_004037545.1| - 2e-06 27.8 0.1 3.2e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|313127275|ref|YP_004037545.1| - 1.2e-05 25.1 0.2 2.9e-05 23.8 0.1 1.7 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|313127275|ref|YP_004037545.1| - 1.6e-05 25.1 0.3 5.8e-05 23.4 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|313127275|ref|YP_004037545.1| - 6.8e-05 21.6 0.2 0.0073 14.9 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|313127275|ref|YP_004037545.1| - 7.5e-05 22.8 0.4 0.00025 21.2 0.3 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|313127275|ref|YP_004037545.1| - 0.0011 18.0 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|313127275|ref|YP_004037545.1| - 0.0019 17.2 0.2 0.025 13.5 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|313127275|ref|YP_004037545.1| - 0.0076 16.4 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.17 gi|313127275|ref|YP_004037545.1| - 0.011 14.6 0.2 0.016 14.1 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A TrkA_N PF02254.13 gi|313127275|ref|YP_004037545.1| - 0.019 14.9 0.5 0.052 13.5 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain Methyltransf_11 PF08241.7 gi|313127276|ref|YP_004037546.1| - 7.1e-14 52.0 0.0 1.1e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313127276|ref|YP_004037546.1| - 1.3e-13 50.8 0.0 1.6e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313127276|ref|YP_004037546.1| - 1.8e-12 47.7 0.0 3.1e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127276|ref|YP_004037546.1| - 6.4e-12 45.8 0.0 9.8e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|313127276|ref|YP_004037546.1| - 7.8e-12 45.1 0.0 1.1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|313127276|ref|YP_004037546.1| - 9.9e-11 41.1 0.0 1.3e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|313127276|ref|YP_004037546.1| - 3.2e-10 39.9 0.0 4.7e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127276|ref|YP_004037546.1| - 7.9e-10 38.7 0.8 1.5e-09 37.8 0.5 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313127276|ref|YP_004037546.1| - 3.8e-07 30.4 0.0 7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|313127276|ref|YP_004037546.1| - 1.3e-05 25.2 0.0 1.4e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|313127276|ref|YP_004037546.1| - 0.00045 19.3 0.0 0.00065 18.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|313127276|ref|YP_004037546.1| - 0.00053 19.4 0.0 0.00085 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|313127276|ref|YP_004037546.1| - 0.0038 16.1 0.0 0.0051 15.7 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.15 gi|313127276|ref|YP_004037546.1| - 0.0057 15.7 0.0 0.0075 15.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|313127276|ref|YP_004037546.1| - 0.0061 16.0 0.0 0.0082 15.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|313127276|ref|YP_004037546.1| - 0.009 15.1 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Pyr_excise PF03013.9 gi|313127276|ref|YP_004037546.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase Methyltransf_19 PF04672.7 gi|313127276|ref|YP_004037546.1| - 0.045 13.0 0.3 0.6 9.3 0.2 2.0 1 1 0 1 1 1 0 S-adenosyl methyltransferase Methyltransf_32 PF13679.1 gi|313127276|ref|YP_004037546.1| - 0.055 13.1 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Aldolase_2 PF10120.4 gi|313127277|ref|YP_004037547.1| - 1.2e-44 151.6 0.0 1.9e-44 151.0 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|313127277|ref|YP_004037547.1| - 7e-07 28.9 0.1 1.5e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|313127277|ref|YP_004037547.1| - 1.8e-05 24.4 0.0 3.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313127277|ref|YP_004037547.1| - 4.6e-05 23.5 0.2 4.6e-05 23.5 0.2 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|313127277|ref|YP_004037547.1| - 0.00014 21.3 0.3 0.001 18.6 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain HTH_19 PF12844.2 gi|313127277|ref|YP_004037547.1| - 0.00016 21.6 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313127277|ref|YP_004037547.1| - 0.00021 20.5 1.3 0.0073 15.6 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|313127277|ref|YP_004037547.1| - 0.00032 20.3 0.0 0.0028 17.2 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_26 PF13443.1 gi|313127277|ref|YP_004037547.1| - 0.00052 20.1 0.0 0.00097 19.2 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.1 gi|313127277|ref|YP_004037547.1| - 0.00071 19.0 0.0 0.002 17.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313127277|ref|YP_004037547.1| - 0.00094 18.5 0.0 0.0059 15.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RepB PF07506.6 gi|313127277|ref|YP_004037547.1| - 0.0065 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 RepB plasmid partitioning protein MarR PF01047.17 gi|313127277|ref|YP_004037547.1| - 0.019 14.6 0.0 4.4 7.0 0.0 3.1 3 0 0 3 3 3 0 MarR family P22_Cro PF14549.1 gi|313127277|ref|YP_004037547.1| - 0.043 13.5 0.0 0.13 11.9 0.0 1.8 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Sigma70_r4_2 PF08281.7 gi|313127277|ref|YP_004037547.1| - 0.044 13.2 0.4 0.17 11.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|313127277|ref|YP_004037547.1| - 0.045 13.3 1.2 3.2 7.4 0.0 3.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain KorB PF08535.5 gi|313127277|ref|YP_004037547.1| - 0.064 13.4 0.0 0.48 10.6 0.0 2.4 1 1 0 1 1 1 0 KorB domain Cro PF09048.5 gi|313127277|ref|YP_004037547.1| - 0.07 12.7 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Cro Phage_CII PF05269.6 gi|313127277|ref|YP_004037547.1| - 0.076 13.0 0.0 0.24 11.4 0.0 1.9 1 1 0 1 1 1 0 Bacteriophage CII protein DUF2481 PF10654.4 gi|313127277|ref|YP_004037547.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Phage_CI_repr PF07022.8 gi|313127277|ref|YP_004037547.1| - 0.15 12.1 0.0 0.32 11.0 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DCD PF06559.6 gi|313127278|ref|YP_004037548.1| - 1.6e-21 76.1 0.1 6.3e-11 41.2 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|313127278|ref|YP_004037548.1| - 9.4e-16 57.4 0.0 1.4e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase PTH2 PF01981.11 gi|313127279|ref|YP_004037549.1| - 3.9e-41 139.3 0.0 4.3e-41 139.2 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 PAS_9 PF13426.1 gi|313127280|ref|YP_004037550.1| - 1.2e-24 86.6 0.9 2e-11 44.1 0.0 2.4 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|313127280|ref|YP_004037550.1| - 3.3e-18 65.4 0.0 9.6e-18 63.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|313127280|ref|YP_004037550.1| - 5e-17 61.7 1.1 1.3e-09 37.7 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|313127280|ref|YP_004037550.1| - 1.3e-15 57.3 3.3 6.2e-10 39.0 0.1 2.8 3 0 0 3 3 2 2 PAS fold PAS_3 PF08447.6 gi|313127280|ref|YP_004037550.1| - 7.9e-13 48.3 0.0 2.7e-08 33.7 0.0 2.9 2 1 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|313127280|ref|YP_004037550.1| - 1.5e-12 47.2 2.5 3.2e-12 46.2 0.2 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|313127280|ref|YP_004037550.1| - 5.2e-10 38.8 0.4 2.5e-05 23.9 0.0 3.6 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|313127280|ref|YP_004037550.1| - 3.7e-06 26.7 0.1 8.1e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|313127280|ref|YP_004037550.1| - 2.5e-05 24.2 1.2 0.11 12.5 0.0 3.1 3 0 0 3 3 3 2 PAS fold HATPase_c_3 PF13589.1 gi|313127280|ref|YP_004037550.1| - 0.002 17.7 0.0 0.0046 16.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1902 PF08972.6 gi|313127280|ref|YP_004037550.1| - 0.097 12.2 0.5 0.37 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) TruD PF01142.13 gi|313127281|ref|YP_004037551.1| - 8.9e-95 317.5 0.0 1.5e-93 313.4 0.0 2.0 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF3775 PF12616.3 gi|313127281|ref|YP_004037551.1| - 0.045 13.5 0.4 2.4 8.0 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3775) DUF2103 PF09876.4 gi|313127283|ref|YP_004037553.1| - 8.9e-43 144.2 0.3 1.5e-42 143.5 0.1 1.5 2 0 0 2 2 2 1 Predicted metal-binding protein (DUF2103) zf-NADH-PPase PF09297.6 gi|313127283|ref|YP_004037553.1| - 1 8.9 3.9 2.3 7.8 2.7 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|313127284|ref|YP_004037554.1| - 2.8e-24 84.7 1.7 3.4e-24 84.5 1.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|313127285|ref|YP_004037555.1| - 2.4e-10 39.6 6.3 2.8e-10 39.4 4.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|313127285|ref|YP_004037555.1| - 0.00043 19.3 0.3 0.022 13.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|313127285|ref|YP_004037555.1| - 0.00061 19.4 0.3 0.00061 19.4 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|313127285|ref|YP_004037555.1| - 0.00076 18.8 0.9 0.047 13.1 1.8 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain DUF329 PF03884.9 gi|313127285|ref|YP_004037555.1| - 0.0012 18.3 0.7 0.6 9.7 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) TF_Zn_Ribbon PF08271.7 gi|313127285|ref|YP_004037555.1| - 0.0037 16.5 1.5 0.0049 16.1 1.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|313127285|ref|YP_004037555.1| - 0.0054 16.5 4.8 0.14 11.9 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.4 gi|313127285|ref|YP_004037555.1| - 0.0061 16.3 0.2 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|313127285|ref|YP_004037555.1| - 0.0091 15.4 3.8 0.075 12.5 2.6 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|313127285|ref|YP_004037555.1| - 0.012 15.4 0.8 0.042 13.6 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.2 gi|313127285|ref|YP_004037555.1| - 0.012 15.4 0.7 0.03 14.1 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|313127285|ref|YP_004037555.1| - 0.016 14.7 1.2 1.5 8.3 0.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) OrfB_Zn_ribbon PF07282.6 gi|313127285|ref|YP_004037555.1| - 0.019 14.6 1.0 0.023 14.3 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|313127285|ref|YP_004037555.1| - 0.039 13.6 1.6 0.14 11.8 1.2 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.11 gi|313127285|ref|YP_004037555.1| - 0.048 13.3 3.8 0.81 9.3 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-Di19 PF05605.7 gi|313127285|ref|YP_004037555.1| - 0.049 13.7 0.4 0.79 9.8 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc-ribbons_6 PF07191.7 gi|313127285|ref|YP_004037555.1| - 0.053 13.3 0.2 0.067 12.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-AN1 PF01428.11 gi|313127285|ref|YP_004037555.1| - 0.061 13.1 0.9 0.14 12.0 0.7 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger CpXC PF14353.1 gi|313127285|ref|YP_004037555.1| - 0.067 13.1 1.4 1.1 9.2 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Sgf11 PF08209.6 gi|313127285|ref|YP_004037555.1| - 0.067 12.5 3.6 1.2 8.5 0.3 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TFIIS_C PF01096.13 gi|313127285|ref|YP_004037555.1| - 0.073 12.7 1.2 5 6.8 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|313127285|ref|YP_004037555.1| - 0.095 12.7 1.9 0.38 10.8 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.1 gi|313127285|ref|YP_004037555.1| - 0.098 13.0 1.3 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger C1_1 PF00130.17 gi|313127285|ref|YP_004037555.1| - 0.11 12.3 0.5 0.14 11.9 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.1 gi|313127285|ref|YP_004037555.1| - 0.14 11.8 5.6 5.5 6.7 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|313127285|ref|YP_004037555.1| - 0.14 12.4 1.6 1.7 8.9 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-TFIIB PF13453.1 gi|313127285|ref|YP_004037555.1| - 0.15 11.2 1.5 0.28 10.4 1.0 1.4 1 1 1 2 2 2 0 Transcription factor zinc-finger RNHCP PF12647.2 gi|313127285|ref|YP_004037555.1| - 0.16 11.7 0.5 0.21 11.4 0.3 1.3 1 1 0 1 1 1 0 RNHCP domain zf-RING_3 PF14369.1 gi|313127285|ref|YP_004037555.1| - 0.17 11.8 2.0 0.28 11.2 1.4 1.4 1 0 0 1 1 1 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|313127285|ref|YP_004037555.1| - 0.2 11.2 6.0 8.8 6.0 4.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313127285|ref|YP_004037555.1| - 0.43 10.5 5.2 4.5 7.3 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|313127285|ref|YP_004037555.1| - 0.6 9.5 2.5 5.2 6.5 0.1 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_KTR PF14205.1 gi|313127285|ref|YP_004037555.1| - 0.68 9.4 2.9 1.5 8.3 0.1 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR zf-NADH-PPase PF09297.6 gi|313127285|ref|YP_004037555.1| - 0.87 9.1 0.1 0.87 9.1 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2HC_2 PF13913.1 gi|313127285|ref|YP_004037555.1| - 1 9.0 5.0 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|313127285|ref|YP_004037555.1| - 1.5 9.3 4.0 9.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Mu-like_Com PF10122.4 gi|313127285|ref|YP_004037555.1| - 2.9 7.0 6.9 5.6 6.0 1.0 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Pcc1 PF09341.5 gi|313127286|ref|YP_004037556.1| - 1.6e-16 60.0 1.3 1.7e-16 59.9 0.9 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 GP40 PF11025.3 gi|313127286|ref|YP_004037556.1| - 0.051 13.1 0.0 0.051 13.1 0.0 1.1 1 0 0 1 1 1 0 Glycoprotein GP40 of Cryptosporidium Prefoldin_2 PF01920.15 gi|313127287|ref|YP_004037557.1| - 9.1e-25 86.4 19.5 1e-24 86.3 13.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|313127287|ref|YP_004037557.1| - 0.0017 17.3 8.5 0.0023 16.9 5.9 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prefoldin PF02996.12 gi|313127287|ref|YP_004037557.1| - 0.0018 17.8 15.4 0.028 14.0 10.6 2.2 1 1 0 1 1 1 1 Prefoldin subunit PspA_IM30 PF04012.7 gi|313127287|ref|YP_004037557.1| - 0.0044 16.4 11.3 0.13 11.5 0.4 2.0 2 0 0 2 2 2 2 PspA/IM30 family DUF3584 PF12128.3 gi|313127287|ref|YP_004037557.1| - 0.0046 14.3 6.5 0.0053 14.1 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Radical_SAM_N PF08497.5 gi|313127287|ref|YP_004037557.1| - 0.013 14.4 1.6 0.016 14.1 1.1 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal BLOC1_2 PF10046.4 gi|313127287|ref|YP_004037557.1| - 0.047 13.8 9.2 0.17 12.0 1.0 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 eIF3_subunit PF08597.5 gi|313127287|ref|YP_004037557.1| - 0.057 12.9 7.2 0.082 12.4 5.0 1.2 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit Sigma70_ner PF04546.8 gi|313127287|ref|YP_004037557.1| - 0.066 12.8 12.2 0.034 13.7 1.8 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region Laminin_I PF06008.9 gi|313127287|ref|YP_004037557.1| - 0.07 12.4 14.7 0.31 10.3 2.8 2.1 1 1 1 2 2 2 0 Laminin Domain I CK2S PF15011.1 gi|313127287|ref|YP_004037557.1| - 0.073 12.8 5.2 0.16 11.7 3.6 1.5 1 1 0 1 1 1 0 Casein Kinase 2 substrate DUF3610 PF12272.3 gi|313127287|ref|YP_004037557.1| - 0.083 12.5 0.6 0.19 11.3 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3610) Acyl-CoA_dh_C PF12806.2 gi|313127287|ref|YP_004037557.1| - 0.14 12.0 1.7 12 5.7 0.3 2.2 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like CobN-Mg_chel PF02514.11 gi|313127287|ref|YP_004037557.1| - 0.14 9.5 2.2 0.16 9.2 1.5 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase Sec8_exocyst PF04048.9 gi|313127287|ref|YP_004037557.1| - 0.15 11.6 8.0 0.59 9.7 0.5 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain SseC PF04888.7 gi|313127287|ref|YP_004037557.1| - 0.17 11.1 9.0 0.069 12.4 0.5 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family NPV_P10 PF05531.7 gi|313127287|ref|YP_004037557.1| - 0.18 12.0 10.0 0.46 10.7 1.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ADIP PF11559.3 gi|313127287|ref|YP_004037557.1| - 0.19 11.6 12.0 0.066 13.1 1.3 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.3 gi|313127287|ref|YP_004037557.1| - 0.22 11.3 15.9 0.14 11.9 2.3 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4407 PF14362.1 gi|313127287|ref|YP_004037557.1| - 0.23 10.3 10.7 0.23 10.4 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) CDC37_N PF03234.9 gi|313127287|ref|YP_004037557.1| - 0.25 11.6 10.2 0.32 11.2 7.1 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding AAA_27 PF13514.1 gi|313127287|ref|YP_004037557.1| - 0.28 8.8 12.3 0.38 8.3 8.5 1.1 1 0 0 1 1 1 0 AAA domain DUF4164 PF13747.1 gi|313127287|ref|YP_004037557.1| - 0.28 11.3 10.7 0.51 10.5 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF1664 PF07889.7 gi|313127287|ref|YP_004037557.1| - 0.3 10.8 10.5 0.1 12.4 1.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) PilJ PF13675.1 gi|313127287|ref|YP_004037557.1| - 0.33 11.2 9.8 6.6 7.0 6.3 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2353 PF09789.4 gi|313127287|ref|YP_004037557.1| - 0.39 9.9 10.8 0.46 9.6 7.5 1.0 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF4404 PF14357.1 gi|313127287|ref|YP_004037557.1| - 0.43 11.0 12.6 0.68 10.3 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) TraF_2 PF13729.1 gi|313127287|ref|YP_004037557.1| - 0.43 9.3 7.2 0.16 10.7 0.2 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Laminin_II PF06009.7 gi|313127287|ref|YP_004037557.1| - 0.46 10.2 9.0 1.3 8.8 6.2 1.7 1 1 0 1 1 1 0 Laminin Domain II Atg14 PF10186.4 gi|313127287|ref|YP_004037557.1| - 0.5 9.2 7.7 0.71 8.7 5.4 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 COG2 PF06148.6 gi|313127287|ref|YP_004037557.1| - 0.52 10.1 11.3 0.17 11.7 1.6 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FlxA PF14282.1 gi|313127287|ref|YP_004037557.1| - 0.57 10.1 15.3 0.058 13.3 2.3 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF4140 PF13600.1 gi|313127287|ref|YP_004037557.1| - 0.58 10.6 15.1 0.33 11.4 2.2 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) YtxH PF12732.2 gi|313127287|ref|YP_004037557.1| - 0.62 10.4 9.0 1.3 9.4 1.0 2.2 2 0 0 2 2 2 0 YtxH-like protein DUF2379 PF09543.5 gi|313127287|ref|YP_004037557.1| - 0.68 9.8 6.9 0.68 9.8 1.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Flagellin_C PF00700.16 gi|313127287|ref|YP_004037557.1| - 0.85 9.8 5.5 3.3 7.9 0.9 2.5 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region GlnD_UR_UTase PF08335.6 gi|313127287|ref|YP_004037557.1| - 0.85 9.4 5.0 1.1 9.0 3.5 1.3 1 0 0 1 1 1 0 GlnD PII-uridylyltransferase CENP-F_N PF10481.4 gi|313127287|ref|YP_004037557.1| - 0.89 8.8 12.4 0.11 11.8 2.5 2.0 2 0 0 2 2 2 0 Cenp-F N-terminal domain WXG100 PF06013.7 gi|313127287|ref|YP_004037557.1| - 0.96 9.4 11.4 6.1 6.9 1.3 2.8 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Baculo_PEP_C PF04513.7 gi|313127287|ref|YP_004037557.1| - 0.99 9.2 7.8 4 7.2 5.4 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.3 gi|313127287|ref|YP_004037557.1| - 1 8.6 18.7 2 7.6 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Reo_sigmaC PF04582.7 gi|313127287|ref|YP_004037557.1| - 1.1 8.3 4.7 3.8 6.5 3.3 1.7 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Exonuc_VII_L PF02601.10 gi|313127287|ref|YP_004037557.1| - 1.1 8.3 4.8 1.7 7.7 3.3 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit TPR_MLP1_2 PF07926.7 gi|313127287|ref|YP_004037557.1| - 1.3 8.8 18.2 0.37 10.5 1.9 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein FliD_C PF07195.7 gi|313127287|ref|YP_004037557.1| - 1.3 8.3 7.2 2.4 7.3 5.0 1.5 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus V_ATPase_I PF01496.14 gi|313127287|ref|YP_004037557.1| - 1.3 6.7 13.2 3.5 5.3 9.2 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Sipho_Gp157 PF05565.6 gi|313127287|ref|YP_004037557.1| - 1.5 8.3 9.8 11 5.5 6.6 2.0 1 1 0 1 1 1 0 Siphovirus Gp157 bZIP_1 PF00170.16 gi|313127287|ref|YP_004037557.1| - 2 8.4 13.2 0.18 11.7 1.9 2.2 2 0 0 2 2 2 0 bZIP transcription factor LUC7 PF03194.10 gi|313127287|ref|YP_004037557.1| - 2.4 7.6 9.4 3.6 7.0 6.5 1.3 1 0 0 1 1 1 0 LUC7 N_terminus Viral_P18 PF04521.8 gi|313127287|ref|YP_004037557.1| - 2.6 7.5 7.3 0.99 8.8 0.6 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DASH_Dad2 PF08654.5 gi|313127287|ref|YP_004037557.1| - 2.6 8.0 10.0 3.3 7.7 1.3 2.6 2 1 0 2 2 2 0 DASH complex subunit Dad2 FlgN PF05130.7 gi|313127287|ref|YP_004037557.1| - 2.8 8.1 14.6 5.3 7.2 10.1 1.4 1 1 0 1 1 1 0 FlgN protein Phage_GPO PF05929.6 gi|313127287|ref|YP_004037557.1| - 3 7.0 12.0 28 3.8 8.3 1.9 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Glyco_hydro_4C PF11975.3 gi|313127287|ref|YP_004037557.1| - 3 7.5 6.4 5.6 6.6 4.4 1.4 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Hemerythrin PF01814.18 gi|313127287|ref|YP_004037557.1| - 3.1 7.9 7.9 7.2 6.7 5.5 1.6 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Spectrin PF00435.16 gi|313127287|ref|YP_004037557.1| - 3.1 8.1 14.8 4.1 7.7 8.9 2.1 1 1 0 1 1 1 0 Spectrin repeat DUF1759 PF03564.10 gi|313127287|ref|YP_004037557.1| - 3.2 7.5 6.4 8.5 6.1 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) THOC7 PF05615.8 gi|313127287|ref|YP_004037557.1| - 3.2 7.9 14.4 9.5 6.4 10.0 1.7 1 1 0 1 1 1 0 Tho complex subunit 7 V-SNARE PF05008.10 gi|313127287|ref|YP_004037557.1| - 3.3 7.9 13.1 3.9 7.7 2.6 2.3 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Lebercilin PF15619.1 gi|313127287|ref|YP_004037557.1| - 3.4 7.0 15.6 13 5.1 10.8 1.8 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF964 PF06133.6 gi|313127287|ref|YP_004037557.1| - 3.5 7.6 17.8 0.52 10.3 4.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF964) Med10 PF09748.4 gi|313127287|ref|YP_004037557.1| - 3.5 7.4 6.9 3.9 7.3 0.6 2.1 1 1 1 2 2 2 0 Transcription factor subunit Med10 of Mediator complex DUF4071 PF13281.1 gi|313127287|ref|YP_004037557.1| - 3.6 6.3 7.4 0.64 8.8 0.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4071) Bap31 PF05529.7 gi|313127287|ref|YP_004037557.1| - 3.6 7.0 9.7 5.3 6.4 6.7 1.3 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF904 PF06005.7 gi|313127287|ref|YP_004037557.1| - 3.6 7.9 17.6 0.22 11.8 3.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF904) GAS PF13851.1 gi|313127287|ref|YP_004037557.1| - 4.6 6.3 18.3 64 2.6 12.7 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding ERM PF00769.14 gi|313127287|ref|YP_004037557.1| - 4.9 6.6 19.4 10 5.5 13.4 1.5 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Fib_alpha PF08702.5 gi|313127287|ref|YP_004037557.1| - 4.9 7.2 9.4 1.5 8.9 1.1 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Flagellin_N PF00669.15 gi|313127287|ref|YP_004037557.1| - 5.2 6.8 8.5 9.9 5.9 2.4 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region P4Ha_N PF08336.6 gi|313127287|ref|YP_004037557.1| - 5.7 6.7 8.1 6.3 6.6 0.9 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Seryl_tRNA_N PF02403.17 gi|313127287|ref|YP_004037557.1| - 5.7 7.0 14.7 2.2 8.3 1.6 2.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HR1 PF02185.11 gi|313127287|ref|YP_004037557.1| - 5.7 6.7 13.6 8.9 6.1 2.2 3.0 2 2 0 2 2 2 0 Hr1 repeat Cortex-I_coil PF09304.5 gi|313127287|ref|YP_004037557.1| - 5.9 6.9 17.2 0.55 10.2 3.4 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF4200 PF13863.1 gi|313127287|ref|YP_004037557.1| - 6.2 6.7 18.5 0.99 9.3 3.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Herpes_UL6 PF01763.11 gi|313127287|ref|YP_004037557.1| - 6.3 4.8 10.7 3.2 5.7 1.2 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like DUF4446 PF14584.1 gi|313127287|ref|YP_004037557.1| - 6.6 6.5 10.4 1.5 8.6 1.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) bZIP_Maf PF03131.12 gi|313127287|ref|YP_004037557.1| - 6.7 7.0 11.7 2.7 8.3 1.8 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF2203 PF09969.4 gi|313127287|ref|YP_004037557.1| - 7.1 6.8 9.5 1.6e+02 2.4 6.6 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) IncA PF04156.9 gi|313127287|ref|YP_004037557.1| - 7.6 6.0 22.9 37 3.8 15.9 1.8 1 1 0 1 1 1 0 IncA protein DUF972 PF06156.8 gi|313127287|ref|YP_004037557.1| - 7.7 6.9 12.2 2.2 8.6 1.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF972) HSP70 PF00012.15 gi|313127287|ref|YP_004037557.1| - 8.2 4.2 9.8 9.7 3.9 6.8 1.0 1 0 0 1 1 1 0 Hsp70 protein OEP PF02321.13 gi|313127287|ref|YP_004037557.1| - 8.2 5.9 16.3 19 4.7 11.3 1.5 1 1 0 1 1 1 0 Outer membrane efflux protein Prominin PF05478.6 gi|313127287|ref|YP_004037557.1| - 8.7 3.7 7.4 15 2.9 5.2 1.4 1 1 0 1 1 1 0 Prominin Spc24 PF08286.6 gi|313127287|ref|YP_004037557.1| - 8.9 6.0 17.4 1.9 8.2 2.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF3194 PF11419.3 gi|313127288|ref|YP_004037558.1| - 2e-05 24.7 4.1 2.6e-05 24.3 2.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) zf-ribbon_3 PF13248.1 gi|313127289|ref|YP_004037559.1| - 3.8e-05 22.7 1.5 6.4e-05 22.0 1.1 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|313127289|ref|YP_004037559.1| - 0.00016 21.4 1.2 0.033 13.9 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|313127289|ref|YP_004037559.1| - 0.00017 20.8 0.6 0.47 9.8 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-CCHC_4 PF14392.1 gi|313127289|ref|YP_004037559.1| - 0.00055 19.5 0.9 0.0031 17.1 0.0 2.0 2 0 0 2 2 2 1 Zinc knuckle UPF0547 PF10571.4 gi|313127289|ref|YP_004037559.1| - 0.0014 18.2 1.8 0.85 9.3 0.2 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|313127289|ref|YP_004037559.1| - 0.0014 18.2 5.5 0.077 12.6 0.4 2.4 2 0 0 2 2 2 2 Nudix N-terminal Rubredoxin PF00301.15 gi|313127289|ref|YP_004037559.1| - 0.0048 16.7 2.8 0.012 15.5 1.9 1.6 1 1 0 1 1 1 1 Rubredoxin DUF2387 PF09526.5 gi|313127289|ref|YP_004037559.1| - 0.0074 16.1 1.3 1.9 8.4 0.1 2.1 1 1 1 2 2 2 2 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|313127289|ref|YP_004037559.1| - 0.016 15.0 1.5 0.14 12.0 1.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.18 gi|313127289|ref|YP_004037559.1| - 0.036 14.2 0.9 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family OrfB_Zn_ribbon PF07282.6 gi|313127289|ref|YP_004037559.1| - 0.037 13.6 2.5 0.059 13.0 1.7 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|313127289|ref|YP_004037559.1| - 0.038 13.4 1.5 4 7.0 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Churchill PF06573.6 gi|313127289|ref|YP_004037559.1| - 0.061 13.3 0.2 0.074 13.0 0.2 1.1 1 0 0 1 1 1 0 Churchill protein Zn-ribbon_8 PF09723.5 gi|313127289|ref|YP_004037559.1| - 0.097 12.6 2.9 1.9 8.4 2.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|313127289|ref|YP_004037559.1| - 0.13 11.8 2.5 4.5 6.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|313127289|ref|YP_004037559.1| - 0.59 10.5 3.9 5.2 7.5 0.1 2.4 2 1 0 2 2 2 0 Zinc-finger double domain zf-IS66 PF13005.2 gi|313127289|ref|YP_004037559.1| - 0.69 9.9 3.6 6 6.9 0.3 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-tcix PF14952.1 gi|313127289|ref|YP_004037559.1| - 0.73 9.2 3.7 6.3 6.2 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1610 PF07754.6 gi|313127289|ref|YP_004037559.1| - 0.73 9.9 6.5 0.72 10.0 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.3 gi|313127289|ref|YP_004037559.1| - 0.93 9.4 5.4 8.4 6.4 0.1 2.7 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|313127289|ref|YP_004037559.1| - 1.4 8.7 6.8 0.81 9.5 0.3 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF2070 PF09843.4 gi|313127290|ref|YP_004037560.1| - 2.1e-48 164.1 0.5 3.9e-48 163.3 0.1 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) GATase PF00117.23 gi|313127291|ref|YP_004037561.1| - 1.4e-35 122.4 0.0 1.6e-35 122.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313127291|ref|YP_004037561.1| - 4.7e-12 45.8 1.1 7.2e-11 41.9 0.1 2.6 2 1 0 2 2 2 1 Peptidase C26 UPF0104 PF03706.8 gi|313127292|ref|YP_004037562.1| - 5.1e-24 85.0 31.0 7.4e-24 84.5 21.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF968 PF06147.6 gi|313127293|ref|YP_004037563.1| - 0.07 13.0 2.6 4.7 7.0 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF968) C1_1 PF00130.17 gi|313127293|ref|YP_004037563.1| - 0.095 12.4 0.2 0.095 12.4 0.1 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF192 PF02643.10 gi|313127294|ref|YP_004037564.1| - 9.3e-18 63.8 0.0 1.1e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.14 gi|313127295|ref|YP_004037565.1| - 2e-60 204.4 1.0 4e-60 203.4 0.7 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|313127295|ref|YP_004037565.1| - 1.1e-32 112.6 0.8 2.1e-32 111.6 0.5 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Oxidored_molyb PF00174.14 gi|313127298|ref|YP_004037568.1| - 7.2e-34 116.6 0.0 1.1e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|313127298|ref|YP_004037568.1| - 1.7e-17 63.2 0.2 3.1e-17 62.4 0.1 1.4 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain DUF2512 PF10710.4 gi|313127298|ref|YP_004037568.1| - 4.5 6.7 5.2 7.9 5.9 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) Creatininase PF02633.9 gi|313127299|ref|YP_004037569.1| - 3.2e-64 216.2 4.3 3.6e-64 216.1 3.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase AAA_3 PF07726.6 gi|313127300|ref|YP_004037570.1| - 9.5e-67 222.5 0.1 2.4e-66 221.2 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313127300|ref|YP_004037570.1| - 3.2e-14 52.8 0.0 1e-13 51.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313127300|ref|YP_004037570.1| - 3.5e-06 27.2 0.0 6.7e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|313127300|ref|YP_004037570.1| - 1.2e-05 24.8 0.0 0.00012 21.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|313127300|ref|YP_004037570.1| - 1.5e-05 23.9 0.0 0.0037 16.1 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family Mg_chelatase PF01078.16 gi|313127300|ref|YP_004037570.1| - 0.0033 16.6 0.1 2.2 7.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|313127300|ref|YP_004037570.1| - 0.02 13.9 0.0 0.16 10.9 0.0 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|313127300|ref|YP_004037570.1| - 0.072 12.9 0.0 0.26 11.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Dehydratase_SU PF02287.10 gi|313127300|ref|YP_004037570.1| - 0.098 12.3 0.1 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Dehydratase small subunit MCR_alpha_N PF02745.10 gi|313127300|ref|YP_004037570.1| - 0.16 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, N-terminal domain DUF58 PF01882.13 gi|313127302|ref|YP_004037572.1| - 2.1e-22 79.0 1.0 4.7e-22 77.9 0.7 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|313127302|ref|YP_004037572.1| - 1e-08 35.0 1.8 1e-08 35.0 1.2 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|313127302|ref|YP_004037572.1| - 0.00021 20.4 0.0 0.00034 19.8 0.0 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|313127302|ref|YP_004037572.1| - 0.05 13.6 0.5 0.15 12.0 0.2 1.9 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|313127302|ref|YP_004037572.1| - 0.06 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 CARDB DUF4129 PF13559.1 gi|313127304|ref|YP_004037574.1| - 1.8e-14 53.4 1.7 3.7e-14 52.4 1.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF4473 PF14747.1 gi|313127304|ref|YP_004037574.1| - 0.067 13.4 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) DUF1724 PF08350.5 gi|313127305|ref|YP_004037575.1| - 3.1e-08 33.0 0.0 6e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|313127305|ref|YP_004037575.1| - 0.008 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|313127305|ref|YP_004037575.1| - 0.009 16.3 0.0 0.022 15.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|313127305|ref|YP_004037575.1| - 0.052 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|313127305|ref|YP_004037575.1| - 0.099 12.3 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Na_H_Exchanger PF00999.16 gi|313127306|ref|YP_004037576.1| - 6.5e-55 186.1 38.6 7.8e-55 185.9 26.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PT PF04886.7 gi|313127307|ref|YP_004037577.1| - 0.012 14.9 8.2 0.018 14.3 5.7 1.3 1 1 0 1 1 1 0 PT repeat Peptidase_S8 PF00082.17 gi|313127310|ref|YP_004037580.1| - 7.9e-43 146.6 8.3 1.4e-42 145.7 5.8 1.4 1 0 0 1 1 1 1 Subtilase family CarboxypepD_reg PF13620.1 gi|313127310|ref|YP_004037580.1| - 0.043 13.8 1.4 0.22 11.5 1.0 2.3 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain T2SE PF00437.15 gi|313127311|ref|YP_004037581.1| - 2.9e-24 85.4 0.0 7.4e-24 84.0 0.0 1.6 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|313127311|ref|YP_004037581.1| - 0.0012 18.2 0.0 0.0024 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|313127311|ref|YP_004037581.1| - 0.0057 16.3 0.1 0.15 11.7 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|313127311|ref|YP_004037581.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|313127311|ref|YP_004037581.1| - 0.011 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|313127311|ref|YP_004037581.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|313127311|ref|YP_004037581.1| - 0.024 14.5 0.1 0.093 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|313127311|ref|YP_004037581.1| - 0.038 13.9 0.0 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|313127311|ref|YP_004037581.1| - 0.048 13.7 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313127311|ref|YP_004037581.1| - 0.058 14.2 0.0 0.058 14.2 0.0 2.8 3 1 0 3 3 2 0 AAA domain AAA PF00004.24 gi|313127311|ref|YP_004037581.1| - 0.15 12.2 0.1 0.46 10.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SF PF00482.18 gi|313127312|ref|YP_004037582.1| - 2.3e-17 63.0 0.8 1.9e-07 30.9 0.0 3.0 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|313127313|ref|YP_004037583.1| - 0.0017 19.1 1.7 0.0042 17.8 1.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF2892 PF11127.3 gi|313127313|ref|YP_004037583.1| - 1.6 8.5 5.5 1.9 8.3 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) DUF1628 PF07790.6 gi|313127314|ref|YP_004037584.1| - 0.0046 17.6 0.3 0.01 16.5 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Sulfate_tra_GLY PF13792.1 gi|313127317|ref|YP_004037587.1| - 0.092 12.4 3.6 0.18 11.4 2.5 1.4 1 0 0 1 1 1 0 Sulfate transporter N-terminal domain with GLY motif Trypsin_2 PF13365.1 gi|313127318|ref|YP_004037588.1| - 4.3e-08 33.1 0.0 1.7e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|313127318|ref|YP_004037588.1| - 5.3e-08 32.7 0.2 1.6e-07 31.1 0.2 1.7 1 1 0 1 1 1 1 Trypsin PepSY_TM_1 PF13172.1 gi|313127319|ref|YP_004037589.1| - 1.1 9.1 5.0 10 6.0 0.2 2.8 2 0 0 2 2 2 0 PepSY-associated TM helix SSF PF00474.12 gi|313127320|ref|YP_004037590.1| - 3.3e-46 157.7 37.8 4e-46 157.4 26.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family HTH_10 PF04967.7 gi|313127322|ref|YP_004037592.1| - 2.7e-15 55.6 0.0 4.7e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain UPF0122 PF04297.9 gi|313127322|ref|YP_004037592.1| - 0.0011 18.9 0.1 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.2 gi|313127322|ref|YP_004037592.1| - 0.02 14.5 0.0 0.078 12.6 0.0 1.9 1 1 1 2 2 2 0 MarR family Fe_dep_repress PF01325.14 gi|313127322|ref|YP_004037592.1| - 0.034 14.0 0.3 0.19 11.7 0.0 2.3 2 1 1 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|313127322|ref|YP_004037592.1| - 0.049 13.2 0.0 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain DNA_photolyase PF00875.13 gi|313127322|ref|YP_004037592.1| - 0.053 13.2 0.1 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 DNA photolyase adh_short PF00106.20 gi|313127323|ref|YP_004037593.1| - 7.9e-21 74.6 2.9 1.3e-20 74.0 2.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313127323|ref|YP_004037593.1| - 2e-09 37.5 0.0 2.5e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313127323|ref|YP_004037593.1| - 0.00015 21.4 0.8 0.00021 21.0 0.6 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313127323|ref|YP_004037593.1| - 0.0046 16.4 0.2 0.0066 15.9 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|313127323|ref|YP_004037593.1| - 0.0052 16.4 0.3 0.0091 15.6 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|313127323|ref|YP_004037593.1| - 0.11 12.3 0.2 0.26 11.0 0.2 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltransf_18 PF12847.2 gi|313127323|ref|YP_004037593.1| - 0.13 12.8 0.9 0.22 12.1 0.2 1.6 1 1 1 2 2 2 0 Methyltransferase domain SnoaL PF07366.7 gi|313127324|ref|YP_004037594.1| - 6.4e-27 93.6 0.3 7.4e-27 93.4 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|313127324|ref|YP_004037594.1| - 1.2e-21 76.9 1.4 1.7e-21 76.4 0.8 1.3 1 1 1 2 2 2 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|313127324|ref|YP_004037594.1| - 0.0074 16.3 0.1 0.0087 16.1 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain SSF PF00474.12 gi|313127325|ref|YP_004037595.1| - 9.8e-31 106.7 35.5 6.1e-30 104.1 24.6 2.1 1 1 0 1 1 1 1 Sodium:solute symporter family CbiA PF01656.18 gi|313127328|ref|YP_004037598.1| - 7.8e-26 90.6 0.2 9.2e-26 90.4 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313127328|ref|YP_004037598.1| - 2.5e-09 37.2 0.0 3.5e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|313127328|ref|YP_004037598.1| - 2.3e-07 30.2 0.0 0.00032 19.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|313127328|ref|YP_004037598.1| - 2.7e-05 23.3 0.3 0.0043 16.1 0.6 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|313127328|ref|YP_004037598.1| - 4.4e-05 22.6 1.0 0.0004 19.5 0.7 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|313127328|ref|YP_004037598.1| - 0.0031 16.9 0.3 0.0065 15.8 0.2 1.5 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|313127328|ref|YP_004037598.1| - 0.0063 16.1 0.3 0.036 13.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|313127328|ref|YP_004037598.1| - 0.014 14.9 1.3 0.034 13.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|313127328|ref|YP_004037598.1| - 0.043 12.8 0.5 0.068 12.2 0.3 1.3 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.9 gi|313127328|ref|YP_004037598.1| - 0.065 12.1 0.1 0.096 11.6 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase ParA PF10609.4 gi|313127328|ref|YP_004037598.1| - 0.082 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 ParA/MinD ATPase like YhjQ PF06564.7 gi|313127328|ref|YP_004037598.1| - 0.14 11.4 0.2 0.23 10.8 0.1 1.3 1 1 0 1 1 1 0 YhjQ protein CDC45 PF02724.9 gi|313127329|ref|YP_004037599.1| - 5.8 4.8 10.5 6.4 4.6 7.3 1.1 1 0 0 1 1 1 0 CDC45-like protein HTH_10 PF04967.7 gi|313127331|ref|YP_004037601.1| - 1.4e-14 53.3 0.2 2.4e-14 52.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|313127331|ref|YP_004037601.1| - 8.4e-05 21.8 0.0 0.00017 20.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|313127331|ref|YP_004037601.1| - 0.0031 17.3 0.0 0.011 15.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix Phage_CI_repr PF07022.8 gi|313127331|ref|YP_004037601.1| - 0.0088 16.1 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 1 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313127331|ref|YP_004037601.1| - 0.011 15.0 0.1 0.026 13.8 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|313127331|ref|YP_004037601.1| - 0.02 14.5 0.1 0.067 12.8 0.1 1.9 1 1 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|313127331|ref|YP_004037601.1| - 0.026 14.0 1.1 0.047 13.2 0.1 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Frankia_peptide PF14407.1 gi|313127331|ref|YP_004037601.1| - 0.041 13.6 0.6 0.11 12.2 0.1 2.0 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HTH_23 PF13384.1 gi|313127331|ref|YP_004037601.1| - 0.046 13.3 0.1 0.092 12.4 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_8 PF02954.14 gi|313127331|ref|YP_004037601.1| - 0.071 12.6 0.1 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.7 gi|313127331|ref|YP_004037601.1| - 0.096 12.1 0.0 0.096 12.1 0.0 2.3 4 0 0 4 4 4 0 Sigma-70, region 4 HTH_26 PF13443.1 gi|313127331|ref|YP_004037601.1| - 0.11 12.7 0.0 0.53 10.5 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain NADH_4Fe-4S PF10589.4 gi|313127332|ref|YP_004037602.1| - 6.9e-13 47.5 0.1 2.4e-12 45.8 0.1 2.0 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.12 gi|313127332|ref|YP_004037602.1| - 5.6e-12 45.6 0.0 8.6e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.4 gi|313127332|ref|YP_004037602.1| - 0.0054 16.5 0.1 0.028 14.3 0.0 2.3 1 0 0 1 1 1 1 SLBB domain ADH_N PF08240.7 gi|313127332|ref|YP_004037602.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain AFOR_C PF01314.13 gi|313127334|ref|YP_004037604.1| - 3.7e-89 299.0 0.0 6.5e-89 298.2 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|313127334|ref|YP_004037604.1| - 1.1e-60 204.4 0.0 1.6e-60 203.9 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain GATase_3 PF07685.9 gi|313127335|ref|YP_004037605.1| - 2e-34 118.4 0.0 3.6e-34 117.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|313127335|ref|YP_004037605.1| - 1.2e-25 90.0 0.0 1.9e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|313127335|ref|YP_004037605.1| - 8.7e-17 61.3 0.0 8.5e-16 58.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF1611 PF07755.6 gi|313127335|ref|YP_004037605.1| - 0.021 13.4 0.0 0.2 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) GATase PF00117.23 gi|313127335|ref|YP_004037605.1| - 0.051 13.0 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferase class-I CTP_synth_N PF06418.9 gi|313127335|ref|YP_004037605.1| - 0.074 12.1 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus SNO PF01174.14 gi|313127335|ref|YP_004037605.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family SRP54 PF00448.17 gi|313127335|ref|YP_004037605.1| - 0.15 11.4 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|313127335|ref|YP_004037605.1| - 0.15 11.7 0.0 2.6 7.7 0.0 2.5 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B CobA_CobO_BtuR PF02572.10 gi|313127336|ref|YP_004037606.1| - 1.1e-57 194.4 0.0 1.3e-57 194.2 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.12 gi|313127336|ref|YP_004037606.1| - 0.016 14.6 0.3 4 6.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiA PF01656.18 gi|313127336|ref|YP_004037606.1| - 0.047 13.0 0.1 0.093 12.1 0.1 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain YiaAB PF05360.9 gi|313127337|ref|YP_004037607.1| - 7.4 6.2 11.9 16 5.1 0.1 3.3 2 1 2 4 4 4 0 yiaA/B two helix domain GATase_3 PF07685.9 gi|313127339|ref|YP_004037609.1| - 3.3e-33 114.5 0.0 5.3e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|313127339|ref|YP_004037609.1| - 7e-16 58.2 0.0 1.7e-15 56.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|313127339|ref|YP_004037609.1| - 3.6e-11 43.0 0.0 0.00014 21.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.14 gi|313127339|ref|YP_004037609.1| - 0.00029 20.5 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DUF4066 PF13278.1 gi|313127339|ref|YP_004037609.1| - 0.0029 16.8 0.0 0.0058 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_S51 PF03575.12 gi|313127339|ref|YP_004037609.1| - 0.014 15.1 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|313127339|ref|YP_004037609.1| - 0.044 13.2 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family CbiZ PF01955.13 gi|313127340|ref|YP_004037610.1| - 9.1e-42 143.0 2.0 1.1e-41 142.7 1.4 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase TetR_N PF00440.18 gi|313127340|ref|YP_004037610.1| - 0.22 11.1 2.7 0.28 10.8 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family Aminotran_1_2 PF00155.16 gi|313127341|ref|YP_004037611.1| - 2.8e-33 115.3 0.0 3.8e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|313127341|ref|YP_004037611.1| - 0.004 16.2 0.0 0.0081 15.2 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF1250 PF06855.7 gi|313127341|ref|YP_004037611.1| - 0.13 11.7 0.0 0.36 10.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1250) Nif11 PF07862.6 gi|313127341|ref|YP_004037611.1| - 0.16 11.9 0.7 5.9 6.9 0.0 2.8 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function DBI_PRT PF02277.12 gi|313127342|ref|YP_004037612.1| - 2.6e-14 53.0 1.1 4.4e-14 52.2 0.8 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase NTP_transf_3 PF12804.2 gi|313127343|ref|YP_004037613.1| - 1.3e-18 67.6 2.1 1.9e-18 67.0 1.4 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|313127343|ref|YP_004037613.1| - 1.1e-08 35.0 0.0 1.3e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|313127343|ref|YP_004037613.1| - 3.9e-05 23.2 3.2 4.9e-05 22.9 0.8 1.9 1 1 1 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|313127343|ref|YP_004037613.1| - 0.00069 18.9 0.0 0.00093 18.5 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase DUF2064 PF09837.4 gi|313127343|ref|YP_004037613.1| - 0.016 14.8 0.2 0.039 13.5 0.1 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|313127343|ref|YP_004037613.1| - 0.021 13.8 0.0 0.033 13.1 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like CobS PF02654.10 gi|313127344|ref|YP_004037614.1| - 5.4e-40 137.4 16.1 1.2e-39 136.3 11.2 1.5 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.8 gi|313127345|ref|YP_004037615.1| - 4.4e-75 252.5 12.5 5.1e-75 252.2 8.7 1.0 1 0 0 1 1 1 1 CobD/Cbib protein HAD_2 PF13419.1 gi|313127346|ref|YP_004037616.1| - 2.8e-18 66.7 0.0 3.7e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313127346|ref|YP_004037616.1| - 9.9e-05 22.8 0.1 0.001 19.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313127346|ref|YP_004037616.1| - 0.00033 20.3 0.0 0.00066 19.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like DUF4350 PF14258.1 gi|313127346|ref|YP_004037616.1| - 0.0051 16.9 0.6 7.6 6.8 0.4 3.2 2 1 0 2 2 2 2 Domain of unknown function (DUF4350) Hydrolase_6 PF13344.1 gi|313127346|ref|YP_004037616.1| - 0.047 13.5 0.0 0.67 9.8 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HhH-GPD PF00730.20 gi|313127347|ref|YP_004037617.1| - 0.00014 22.1 0.0 0.00027 21.1 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.7 gi|313127347|ref|YP_004037617.1| - 0.04 13.8 0.0 0.065 13.2 0.0 1.3 1 0 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain HbrB PF08539.6 gi|313127347|ref|YP_004037617.1| - 0.083 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 HbrB-like Peptidase_M24 PF00557.19 gi|313127348|ref|YP_004037618.1| - 2.6e-32 112.1 1.5 3.3e-32 111.7 1.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|313127348|ref|YP_004037618.1| - 5e-12 46.4 0.0 1e-11 45.4 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain AhpC-TSA PF00578.16 gi|313127349|ref|YP_004037619.1| - 6.9e-20 70.9 0.0 8e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313127349|ref|YP_004037619.1| - 1.8e-19 69.7 0.0 2.1e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin zf-ribbon_3 PF13248.1 gi|313127350|ref|YP_004037620.1| - 3.2e-10 38.8 14.1 1.2e-06 27.5 3.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|313127350|ref|YP_004037620.1| - 1.6e-08 34.2 11.4 2.8e-08 33.4 7.9 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|313127350|ref|YP_004037620.1| - 2.3e-08 33.2 13.8 8.2e-06 25.1 3.6 2.4 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.16 gi|313127350|ref|YP_004037620.1| - 0.00011 21.9 4.2 0.012 15.5 0.5 3.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family PolC_DP2 PF03833.8 gi|313127350|ref|YP_004037620.1| - 0.001 16.8 1.1 0.001 16.8 0.7 1.2 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Prok-RING_1 PF14446.1 gi|313127350|ref|YP_004037620.1| - 0.0025 17.5 10.1 0.018 14.7 3.0 2.3 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 YwqJ-deaminase PF14431.1 gi|313127350|ref|YP_004037620.1| - 0.0043 16.9 0.1 0.0043 16.9 0.1 1.5 2 0 0 2 2 1 1 YwqJ-like deaminase zf-C3HC4_3 PF13920.1 gi|313127350|ref|YP_004037620.1| - 0.039 13.6 5.7 0.6 9.8 4.0 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nudix_N_2 PF14803.1 gi|313127350|ref|YP_004037620.1| - 0.067 12.8 11.1 2 8.1 1.7 3.8 3 1 1 4 4 4 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|313127350|ref|YP_004037620.1| - 0.16 11.4 9.2 1 8.9 1.0 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|313127350|ref|YP_004037620.1| - 0.59 9.8 12.2 1.1 8.9 0.3 2.9 2 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|313127350|ref|YP_004037620.1| - 0.65 9.8 8.6 4.5 7.1 6.1 2.0 1 1 0 1 1 1 0 zinc-ribbons Ribosomal_L32p PF01783.18 gi|313127350|ref|YP_004037620.1| - 1.2 9.3 4.7 0.84 9.8 1.4 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|313127350|ref|YP_004037620.1| - 1.4 8.9 8.2 9.4 6.3 0.4 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Stig1 PF04885.8 gi|313127350|ref|YP_004037620.1| - 1.8 8.7 9.0 2.3 8.3 6.3 1.3 1 1 0 1 1 1 0 Stigma-specific protein, Stig1 Cys_rich_KTR PF14205.1 gi|313127350|ref|YP_004037620.1| - 1.9 8.0 9.4 4.1 6.9 0.3 2.8 3 0 0 3 3 2 0 Cysteine-rich KTR zf-C2HC_2 PF13913.1 gi|313127350|ref|YP_004037620.1| - 2.9 7.6 13.3 14 5.5 0.3 3.4 3 0 0 3 3 3 0 zinc-finger of a C2HC-type TerY-C PF15616.1 gi|313127350|ref|YP_004037620.1| - 3.3 7.6 11.2 15 5.4 7.7 2.1 1 1 0 1 1 1 0 TerY-C metal binding domain HypA PF01155.14 gi|313127350|ref|YP_004037620.1| - 6.5 6.4 9.4 1.8e+02 1.8 6.5 2.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2191 PF09957.4 gi|313127350|ref|YP_004037620.1| - 7 6.5 6.2 0.99 9.2 0.5 2.4 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) RHH_1 PF01402.16 gi|313127351|ref|YP_004037621.1| - 4.3e-08 32.7 0.1 5.3e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|313127351|ref|YP_004037621.1| - 0.087 13.0 0.1 0.096 12.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) FtsZ_C PF12327.3 gi|313127352|ref|YP_004037622.1| - 2.5e-35 120.4 0.7 2.5e-35 120.4 0.5 2.7 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|313127352|ref|YP_004037622.1| - 4.9e-33 114.7 3.1 2.7e-32 112.3 2.1 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|313127352|ref|YP_004037622.1| - 0.021 14.6 0.0 0.058 13.2 0.0 1.7 1 0 0 1 1 1 0 ThiF family Copper-bind PF00127.15 gi|313127353|ref|YP_004037623.1| - 1.4e-13 50.8 0.1 4.8e-13 49.1 0.1 1.9 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|313127353|ref|YP_004037623.1| - 5.1 7.3 6.9 0.88 9.7 1.3 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ATP_bind_3 PF01171.15 gi|313127354|ref|YP_004037624.1| - 4.7e-15 55.5 0.0 9.1e-15 54.6 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|313127354|ref|YP_004037624.1| - 1.4e-05 24.9 0.0 2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|313127354|ref|YP_004037624.1| - 9.6e-05 21.3 0.0 0.00017 20.6 0.0 1.4 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|313127354|ref|YP_004037624.1| - 0.0049 15.4 0.0 0.0067 15.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase DUF2392 PF10288.4 gi|313127354|ref|YP_004037624.1| - 0.0061 16.8 0.0 0.0092 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) ThiI PF02568.9 gi|313127354|ref|YP_004037624.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) RecR PF02132.10 gi|313127354|ref|YP_004037624.1| - 0.4 10.1 6.8 0.68 9.4 1.5 3.0 3 0 0 3 3 3 0 RecR protein OppC_N PF12911.2 gi|313127356|ref|YP_004037626.1| - 0.012 14.9 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF2082 PF09855.4 gi|313127357|ref|YP_004037627.1| - 4.1e-26 90.6 0.3 4.6e-26 90.4 0.2 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|313127357|ref|YP_004037627.1| - 0.00017 21.8 0.2 0.00022 21.4 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|313127357|ref|YP_004037627.1| - 0.00048 19.2 0.7 0.54 9.5 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|313127357|ref|YP_004037627.1| - 0.0018 18.0 3.0 0.49 10.2 0.3 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|313127357|ref|YP_004037627.1| - 0.0018 17.6 1.9 0.22 11.0 0.0 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|313127357|ref|YP_004037627.1| - 0.0022 17.8 0.5 0.55 10.2 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DUF2387 PF09526.5 gi|313127357|ref|YP_004037627.1| - 0.0025 17.6 0.8 0.26 11.2 0.7 2.1 1 1 1 2 2 2 2 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|313127357|ref|YP_004037627.1| - 0.011 15.5 0.9 0.023 14.5 0.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|313127357|ref|YP_004037627.1| - 0.028 13.9 3.3 0.92 9.0 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TerY-C PF15616.1 gi|313127357|ref|YP_004037627.1| - 0.033 14.1 0.7 0.052 13.4 0.5 1.4 1 1 0 1 1 1 0 TerY-C metal binding domain zf-C2H2_3 PF13878.1 gi|313127357|ref|YP_004037627.1| - 0.04 13.4 1.4 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.7 gi|313127357|ref|YP_004037627.1| - 0.055 12.7 3.6 0.43 9.9 2.5 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2225 PF09986.4 gi|313127357|ref|YP_004037627.1| - 0.061 12.7 1.0 0.21 11.0 0.7 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Ribosomal_L37e PF01907.14 gi|313127357|ref|YP_004037627.1| - 0.072 12.9 1.2 0.88 9.4 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e OrfB_Zn_ribbon PF07282.6 gi|313127357|ref|YP_004037627.1| - 0.091 12.4 4.1 2.3 7.9 0.3 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.1 gi|313127357|ref|YP_004037627.1| - 0.12 11.8 1.5 1.7 8.1 0.1 2.0 1 1 0 2 2 2 0 Transposase zinc-binding domain RNA_POL_M_15KD PF02150.11 gi|313127357|ref|YP_004037627.1| - 0.12 12.0 1.6 3.1 7.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.13 gi|313127357|ref|YP_004037627.1| - 0.12 12.0 6.1 1 9.0 0.3 2.5 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.12 gi|313127357|ref|YP_004037627.1| - 0.13 11.7 4.4 3.1 7.3 0.9 2.3 2 1 0 2 2 2 0 Ribosomal protein S27 zf-TFIIB PF13453.1 gi|313127357|ref|YP_004037627.1| - 0.14 11.3 0.4 0.3 10.3 0.3 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger CpXC PF14353.1 gi|313127357|ref|YP_004037627.1| - 0.15 12.0 1.1 0.29 11.1 0.7 1.5 1 1 0 1 1 1 0 CpXC protein A2L_zn_ribbon PF08792.5 gi|313127357|ref|YP_004037627.1| - 0.15 11.5 0.5 4.8 6.7 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-tcix PF14952.1 gi|313127357|ref|YP_004037627.1| - 0.21 10.9 1.9 1.5 8.2 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DNA_RNApol_7kD PF03604.8 gi|313127357|ref|YP_004037627.1| - 0.22 11.0 4.0 0.54 9.7 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|313127357|ref|YP_004037627.1| - 0.59 9.8 5.6 9.4 6.0 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|313127357|ref|YP_004037627.1| - 1.1 9.0 3.9 13 5.5 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313127357|ref|YP_004037627.1| - 1.2 8.8 4.0 13 5.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Methyltransf_11 PF08241.7 gi|313127358|ref|YP_004037628.1| - 9.9e-18 64.4 0.0 2.6e-17 63.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313127358|ref|YP_004037628.1| - 1.3e-13 50.8 0.0 2.2e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313127358|ref|YP_004037628.1| - 7.3e-11 42.3 0.0 1.4e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313127358|ref|YP_004037628.1| - 1.9e-10 40.7 0.0 3.6e-10 39.8 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127358|ref|YP_004037628.1| - 5.5e-10 39.5 0.0 1.9e-09 37.8 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313127358|ref|YP_004037628.1| - 1.3e-09 38.5 0.3 5.4e-09 36.6 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127358|ref|YP_004037628.1| - 1.8e-09 37.6 5.0 6.6e-08 32.5 3.5 2.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313127358|ref|YP_004037628.1| - 1.6e-06 27.4 0.0 2.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|313127358|ref|YP_004037628.1| - 2.2e-06 27.1 0.0 9.9e-06 25.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain MetW PF07021.7 gi|313127358|ref|YP_004037628.1| - 2.5e-06 26.9 0.0 4.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|313127358|ref|YP_004037628.1| - 4.8e-05 22.6 0.0 6.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|313127358|ref|YP_004037628.1| - 0.00017 21.2 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|313127358|ref|YP_004037628.1| - 0.00065 18.8 0.0 0.00097 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|313127358|ref|YP_004037628.1| - 0.0066 15.9 0.0 0.018 14.5 0.0 1.7 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.11 gi|313127358|ref|YP_004037628.1| - 0.02 13.2 0.0 0.03 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.15 gi|313127358|ref|YP_004037628.1| - 0.069 12.2 0.1 0.22 10.5 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|313127358|ref|YP_004037628.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|313127358|ref|YP_004037628.1| - 0.17 11.4 0.1 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Exo_endo_phos PF03372.18 gi|313127359|ref|YP_004037629.1| - 2.3e-15 57.2 0.3 3.5e-15 56.6 0.2 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Dehydratase_MU PF02288.10 gi|313127359|ref|YP_004037629.1| - 0.057 13.1 0.0 4.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Dehydratase medium subunit TAT_signal PF10518.4 gi|313127359|ref|YP_004037629.1| - 0.74 9.9 14.5 0.06 13.3 5.2 2.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence AP_endonuc_2 PF01261.19 gi|313127360|ref|YP_004037630.1| - 9.2e-25 87.1 1.0 1.5e-24 86.4 0.3 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AhpC-TSA PF00578.16 gi|313127361|ref|YP_004037631.1| - 2.2e-21 75.7 0.0 2.7e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313127361|ref|YP_004037631.1| - 1.8e-15 56.7 0.0 2.2e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|313127361|ref|YP_004037631.1| - 0.14 12.0 0.1 0.74 9.7 0.1 1.9 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme BPL_LplA_LipB PF03099.14 gi|313127362|ref|YP_004037632.1| - 2.9e-17 62.8 0.0 4.6e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family adh_short PF00106.20 gi|313127363|ref|YP_004037633.1| - 1.1e-23 83.9 0.8 1.6e-23 83.4 0.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313127363|ref|YP_004037633.1| - 9.7e-10 38.3 0.7 2.5e-09 37.0 0.5 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313127363|ref|YP_004037633.1| - 3.9e-07 29.7 0.0 6e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313127363|ref|YP_004037633.1| - 4.2e-07 30.1 0.2 6.4e-07 29.5 0.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short_C2 PF13561.1 gi|313127363|ref|YP_004037633.1| - 1.2e-05 25.1 0.0 1.5e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase 3Beta_HSD PF01073.14 gi|313127363|ref|YP_004037633.1| - 0.016 13.9 0.0 0.021 13.5 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Eno-Rase_NADH_b PF12242.3 gi|313127363|ref|YP_004037633.1| - 0.025 14.3 0.7 0.062 13.1 0.5 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase F420_oxidored PF03807.12 gi|313127363|ref|YP_004037633.1| - 0.071 13.5 0.1 0.18 12.2 0.0 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|313127363|ref|YP_004037633.1| - 0.073 12.1 0.1 0.29 10.1 0.0 1.9 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_Gly3P_dh_N PF01210.18 gi|313127363|ref|YP_004037633.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MoCF_biosynth PF00994.19 gi|313127363|ref|YP_004037633.1| - 0.12 11.8 0.0 0.25 10.7 0.0 1.6 1 1 0 1 1 1 0 Probable molybdopterin binding domain DFP PF04127.10 gi|313127363|ref|YP_004037633.1| - 0.14 11.7 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF4112 PF13430.1 gi|313127365|ref|YP_004037635.1| - 3.5e-30 104.0 0.6 4.1e-30 103.8 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) RIO1 PF01163.17 gi|313127369|ref|YP_004037639.1| - 5.1e-47 159.6 0.1 7.5e-47 159.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|313127369|ref|YP_004037639.1| - 8.2e-26 89.8 0.0 1.5e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|313127369|ref|YP_004037639.1| - 1.1e-05 25.3 0.6 0.14 11.8 0.4 2.9 1 1 1 2 2 2 2 Phosphotransferase enzyme family Regulator_TrmB PF11495.3 gi|313127370|ref|YP_004037640.1| - 1.2e-61 207.6 0.0 1.5e-61 207.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|313127370|ref|YP_004037640.1| - 7.9e-16 57.5 0.0 2e-15 56.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313127370|ref|YP_004037640.1| - 0.004 16.8 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313127370|ref|YP_004037640.1| - 0.0057 16.2 0.5 1.1 8.9 0.0 2.5 2 0 0 2 2 2 2 HTH domain PLDc_2 PF13091.1 gi|313127370|ref|YP_004037640.1| - 0.0063 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain Rrf2 PF02082.15 gi|313127370|ref|YP_004037640.1| - 0.012 15.7 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MerR-DNA-bind PF09278.6 gi|313127370|ref|YP_004037640.1| - 0.057 13.8 0.5 1.2 9.5 0.0 2.6 2 0 0 2 2 2 0 MerR, DNA binding MarR PF01047.17 gi|313127370|ref|YP_004037640.1| - 0.071 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family Alpha-amylase PF00128.19 gi|313127371|ref|YP_004037641.1| - 1.5e-54 185.5 0.0 2.2e-54 184.9 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|313127371|ref|YP_004037641.1| - 8.1e-09 35.4 0.0 3.1e-08 33.6 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.13 gi|313127371|ref|YP_004037641.1| - 0.0038 17.3 0.1 0.018 15.1 0.0 2.2 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain Glyco_hydro_15 PF00723.16 gi|313127372|ref|YP_004037642.1| - 0.00063 18.4 0.3 0.0084 14.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolases family 15 DUF1391 PF07151.7 gi|313127372|ref|YP_004037642.1| - 0.016 14.6 0.1 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1391) Prenyltrans_1 PF13243.1 gi|313127372|ref|YP_004037642.1| - 0.088 12.8 4.0 0.1 12.6 0.9 2.5 2 1 1 3 3 3 0 Prenyltransferase-like ABC_tran PF00005.22 gi|313127373|ref|YP_004037643.1| - 7.1e-35 120.2 0.0 1.2e-34 119.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313127373|ref|YP_004037643.1| - 9.3e-10 38.3 0.5 3.4e-09 36.5 0.4 2.0 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|313127373|ref|YP_004037643.1| - 9.2e-08 32.3 0.0 0.00043 20.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|313127373|ref|YP_004037643.1| - 5.2e-07 29.6 0.8 1.8e-06 27.9 0.1 2.3 3 0 0 3 3 2 1 TOBE domain SMC_N PF02463.14 gi|313127373|ref|YP_004037643.1| - 4.8e-05 22.6 0.1 0.00014 21.1 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313127373|ref|YP_004037643.1| - 0.0029 17.1 0.2 0.018 14.5 0.0 2.3 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313127373|ref|YP_004037643.1| - 0.0035 17.4 0.6 0.011 15.8 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313127373|ref|YP_004037643.1| - 0.0053 17.0 0.0 0.01 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313127373|ref|YP_004037643.1| - 0.0063 16.5 0.2 0.017 15.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|313127373|ref|YP_004037643.1| - 0.01 15.3 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|313127373|ref|YP_004037643.1| - 0.011 14.9 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|313127373|ref|YP_004037643.1| - 0.012 15.7 0.2 0.055 13.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|313127373|ref|YP_004037643.1| - 0.013 14.5 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|313127373|ref|YP_004037643.1| - 0.028 15.2 0.5 0.058 14.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|313127373|ref|YP_004037643.1| - 0.032 12.9 0.0 0.048 12.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|313127373|ref|YP_004037643.1| - 0.047 13.5 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|313127373|ref|YP_004037643.1| - 0.058 12.4 0.0 0.15 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|313127373|ref|YP_004037643.1| - 0.073 12.7 0.1 0.26 11.0 0.1 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|313127373|ref|YP_004037643.1| - 0.077 12.9 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|313127373|ref|YP_004037643.1| - 0.098 13.1 0.0 0.36 11.3 0.0 1.9 2 0 0 2 2 1 0 Miro-like protein AAA_25 PF13481.1 gi|313127373|ref|YP_004037643.1| - 0.1 11.9 0.2 0.28 10.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|313127373|ref|YP_004037643.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313127373|ref|YP_004037643.1| - 0.16 10.8 0.1 0.28 9.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|313127373|ref|YP_004037643.1| - 0.16 12.1 0.0 0.99 9.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_19 PF13245.1 gi|313127373|ref|YP_004037643.1| - 0.81 9.4 3.9 3.3 7.5 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain SBP_bac_8 PF13416.1 gi|313127374|ref|YP_004037644.1| - 5.5e-33 114.9 8.4 8e-33 114.3 5.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313127374|ref|YP_004037644.1| - 1.6e-16 60.9 7.6 1.6e-16 60.9 5.3 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|313127374|ref|YP_004037644.1| - 0.0037 17.1 0.2 0.0079 16.1 0.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|313127375|ref|YP_004037645.1| - 5.4e-16 58.6 14.4 5.4e-16 58.6 10.0 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313127376|ref|YP_004037646.1| - 2.9e-16 59.5 14.4 2.9e-16 59.5 10.0 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|313127376|ref|YP_004037646.1| - 4.5 7.0 19.1 0.035 13.8 1.5 3.4 3 1 1 4 4 4 0 FtsX-like permease family Cupin_2 PF07883.6 gi|313127377|ref|YP_004037647.1| - 4.1e-13 48.6 0.0 6.8e-13 47.9 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|313127377|ref|YP_004037647.1| - 2.5e-06 27.2 0.0 3.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|313127377|ref|YP_004037647.1| - 6.1e-05 22.5 0.0 9.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.7 gi|313127377|ref|YP_004037647.1| - 0.0066 15.8 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|313127377|ref|YP_004037647.1| - 0.013 15.0 0.1 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_6 PF12852.2 gi|313127377|ref|YP_004037647.1| - 0.025 14.1 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.13 gi|313127377|ref|YP_004037647.1| - 0.066 12.8 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Ribosomal_L15e PF00827.12 gi|313127378|ref|YP_004037648.1| - 1.8e-84 282.0 5.6 2.1e-84 281.8 3.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 GETHR PF05671.6 gi|313127378|ref|YP_004037648.1| - 1.5 8.0 7.8 0.21 10.7 1.2 2.3 2 0 0 2 2 2 0 GETHR pentapeptide repeat (5 copies) Abi PF02517.11 gi|313127379|ref|YP_004037649.1| - 3.8e-10 39.7 15.9 3.1e-09 36.8 11.0 2.4 1 1 0 1 1 1 1 CAAX protease self-immunity Rhodanese PF00581.15 gi|313127380|ref|YP_004037650.1| - 7e-16 58.5 0.0 8.8e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain LVIVD PF08309.6 gi|313127380|ref|YP_004037650.1| - 0.048 12.6 0.1 0.099 11.6 0.0 1.5 1 0 0 1 1 1 0 LVIVD repeat ThiF PF00899.16 gi|313127381|ref|YP_004037651.1| - 5.7e-45 152.4 0.1 8.5e-45 151.9 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|313127381|ref|YP_004037651.1| - 6.8e-33 112.1 0.0 1e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|313127381|ref|YP_004037651.1| - 0.0029 17.6 0.2 0.0079 16.2 0.1 1.6 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|313127381|ref|YP_004037651.1| - 0.021 13.7 0.2 0.035 13.1 0.1 1.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|313127381|ref|YP_004037651.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding MCPsignal PF00015.16 gi|313127382|ref|YP_004037652.1| - 7.7e-42 143.2 48.1 1.1e-39 136.2 21.9 2.6 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|313127382|ref|YP_004037652.1| - 3.9e-08 33.5 0.0 1.5e-07 31.6 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|313127382|ref|YP_004037652.1| - 6.3e-06 25.9 0.0 1.9e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|313127382|ref|YP_004037652.1| - 7.2e-06 26.0 5.8 1.4e-05 25.1 0.1 3.7 3 1 0 3 3 3 1 PAS fold V_ATPase_I PF01496.14 gi|313127382|ref|YP_004037652.1| - 0.014 13.3 10.5 0.019 12.8 7.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HAMP PF00672.20 gi|313127382|ref|YP_004037652.1| - 0.016 15.4 15.1 1.2 9.3 0.3 4.8 5 1 0 5 5 4 0 HAMP domain DUF489 PF04356.7 gi|313127382|ref|YP_004037652.1| - 0.023 14.3 4.6 0.77 9.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF489) Mnd1 PF03962.10 gi|313127382|ref|YP_004037652.1| - 0.18 11.4 15.2 1.7 8.3 0.8 2.3 2 0 0 2 2 2 0 Mnd1 family Dor1 PF04124.7 gi|313127382|ref|YP_004037652.1| - 0.19 10.1 6.9 1.3 7.4 0.4 2.4 2 0 0 2 2 2 0 Dor1-like family WXG100 PF06013.7 gi|313127382|ref|YP_004037652.1| - 0.28 11.1 27.2 0.5 10.3 0.4 5.9 3 2 1 5 5 5 0 Proteins of 100 residues with WXG DUF3450 PF11932.3 gi|313127382|ref|YP_004037652.1| - 0.43 9.8 24.2 0.27 10.4 1.8 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) PAS_7 PF12860.2 gi|313127382|ref|YP_004037652.1| - 0.44 10.5 4.4 1.9 8.5 0.0 3.5 3 1 1 4 4 4 0 PAS fold DUF948 PF06103.6 gi|313127382|ref|YP_004037652.1| - 0.48 10.3 21.4 1.2 9.0 2.8 5.0 2 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Sec5 PF15469.1 gi|313127382|ref|YP_004037652.1| - 0.48 10.1 6.5 5 6.8 4.0 2.7 1 1 1 2 2 2 0 Exocyst complex component Sec5 AAA_13 PF13166.1 gi|313127382|ref|YP_004037652.1| - 1.7 6.9 17.6 3.4 6.0 0.5 2.1 1 1 1 2 2 2 0 AAA domain TMP_2 PF06791.8 gi|313127382|ref|YP_004037652.1| - 4.9 6.7 30.2 1.8 8.0 5.6 3.4 1 1 2 3 3 3 0 Prophage tail length tape measure protein BLOC1_2 PF10046.4 gi|313127382|ref|YP_004037652.1| - 5.3 7.2 9.7 1.5 8.9 1.7 3.3 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin PF00261.15 gi|313127382|ref|YP_004037652.1| - 5.4 6.0 23.2 0.074 12.1 3.6 2.5 2 1 0 2 2 2 0 Tropomyosin IncA PF04156.9 gi|313127382|ref|YP_004037652.1| - 8.2 5.9 19.6 2.2 7.8 5.2 2.6 1 1 1 2 2 2 0 IncA protein Laminin_II PF06009.7 gi|313127382|ref|YP_004037652.1| - 8.3 6.1 27.2 7.9 6.2 7.2 4.1 1 1 2 4 4 4 0 Laminin Domain II CorA PF01544.13 gi|313127382|ref|YP_004037652.1| - 8.8 5.2 14.6 0.99 8.3 3.4 2.6 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Spc7 PF08317.6 gi|313127382|ref|YP_004037652.1| - 9.4 4.7 18.8 2.1 6.9 5.3 2.4 1 1 3 4 4 4 0 Spc7 kinetochore protein HTH_10 PF04967.7 gi|313127383|ref|YP_004037653.1| - 2.1e-13 49.5 0.0 3.7e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|313127383|ref|YP_004037653.1| - 0.015 14.6 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313127383|ref|YP_004037653.1| - 0.019 14.7 0.1 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313127383|ref|YP_004037653.1| - 0.021 14.3 0.5 0.61 9.5 0.1 2.8 2 1 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|313127383|ref|YP_004037653.1| - 0.076 12.3 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Complex1_49kDa PF00346.14 gi|313127384|ref|YP_004037654.1| - 1e-64 218.1 0.0 9.5e-62 208.4 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|313127384|ref|YP_004037654.1| - 1.8e-28 98.7 0.1 3.5e-28 97.8 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MutS_V PF00488.16 gi|313127385|ref|YP_004037655.1| - 4e-101 337.3 0.0 6.6e-101 336.6 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|313127385|ref|YP_004037655.1| - 5e-48 163.5 5.5 2e-46 158.3 2.8 2.3 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|313127385|ref|YP_004037655.1| - 6.5e-27 93.8 0.0 1.5e-26 92.6 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|313127385|ref|YP_004037655.1| - 3.2e-23 81.7 2.0 8.4e-23 80.3 1.4 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|313127385|ref|YP_004037655.1| - 7.7e-22 77.8 0.0 2.6e-21 76.1 0.0 1.9 2 0 0 2 2 2 1 MutS domain II FbpA PF05833.6 gi|313127385|ref|YP_004037655.1| - 0.019 13.5 0.7 0.031 12.8 0.5 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) AAA_29 PF13555.1 gi|313127385|ref|YP_004037655.1| - 0.093 12.2 0.0 0.093 12.2 0.0 2.0 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|313127385|ref|YP_004037655.1| - 0.1 12.5 0.0 0.44 10.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain Herpes_UL6 PF01763.11 gi|313127385|ref|YP_004037655.1| - 0.12 10.5 0.3 0.19 9.8 0.2 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like AAA_23 PF13476.1 gi|313127385|ref|YP_004037655.1| - 0.14 12.4 0.2 5.1 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain NUDIX PF00293.23 gi|313127386|ref|YP_004037656.1| - 4.1e-20 71.7 0.1 4.9e-20 71.5 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain MutL_C PF08676.6 gi|313127387|ref|YP_004037657.1| - 2.2e-37 127.8 0.0 3.4e-37 127.2 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|313127387|ref|YP_004037657.1| - 6.6e-36 122.3 0.0 1e-35 121.7 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|313127387|ref|YP_004037657.1| - 3.4e-12 46.2 0.1 8.3e-12 44.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|313127387|ref|YP_004037657.1| - 2.9e-10 39.8 0.3 7.1e-10 38.5 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aldose_epim PF01263.15 gi|313127387|ref|YP_004037657.1| - 0.029 13.4 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Aldose 1-epimerase PfkB PF00294.19 gi|313127388|ref|YP_004037658.1| - 9.5e-53 179.2 0.1 1.1e-52 179.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Pirin_C PF05726.8 gi|313127389|ref|YP_004037659.1| - 0.45 10.6 5.1 1.7 8.7 0.1 3.5 3 1 1 4 4 4 0 Pirin C-terminal cupin domain Pyr_redox_2 PF07992.9 gi|313127390|ref|YP_004037660.1| - 6.9e-21 75.0 0.0 1e-20 74.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313127390|ref|YP_004037660.1| - 5.4e-14 52.7 0.1 2.1e-08 34.4 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313127390|ref|YP_004037660.1| - 3e-11 43.5 0.2 1.2e-10 41.5 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|313127390|ref|YP_004037660.1| - 3.5e-07 30.2 0.0 7.7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_9 PF13454.1 gi|313127390|ref|YP_004037660.1| - 1.6e-05 24.7 0.9 0.011 15.5 0.0 3.3 2 1 1 3 3 3 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|313127390|ref|YP_004037660.1| - 0.0016 18.4 0.6 0.035 14.1 0.0 2.8 3 0 0 3 3 3 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|313127390|ref|YP_004037660.1| - 0.018 15.3 2.0 1.4 9.2 0.1 4.0 4 1 0 4 4 4 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|313127390|ref|YP_004037660.1| - 0.02 14.2 0.0 0.045 13.1 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|313127390|ref|YP_004037660.1| - 0.022 13.6 0.0 0.23 10.3 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A ThiF PF00899.16 gi|313127390|ref|YP_004037660.1| - 0.15 11.8 0.8 20 5.0 0.2 2.5 2 0 0 2 2 2 0 ThiF family FAD_binding_3 PF01494.14 gi|313127390|ref|YP_004037660.1| - 0.27 10.2 5.7 4.8 6.1 0.0 3.9 4 0 0 4 4 4 0 FAD binding domain DAO PF01266.19 gi|313127390|ref|YP_004037660.1| - 0.95 8.2 9.6 9 5.0 0.0 3.9 3 1 0 4 4 4 0 FAD dependent oxidoreductase HATPase_c PF02518.21 gi|313127391|ref|YP_004037661.1| - 2.2e-14 53.1 0.0 4.2e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|313127391|ref|YP_004037661.1| - 4.1e-06 26.6 0.1 7.3e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|313127391|ref|YP_004037661.1| - 0.001 19.0 0.3 0.0022 17.9 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|313127391|ref|YP_004037661.1| - 0.011 15.2 1.4 0.02 14.4 0.9 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.1 gi|313127391|ref|YP_004037661.1| - 0.023 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 GHKL domain Na_H_antiporter PF03553.9 gi|313127392|ref|YP_004037662.1| - 1.6e-51 175.1 41.6 3.2e-45 154.4 14.0 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family NikR_C PF08753.6 gi|313127394|ref|YP_004037664.1| - 7.6e-20 70.5 0.2 1e-19 70.1 0.1 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|313127394|ref|YP_004037664.1| - 1.4e-07 31.0 0.0 2.8e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Response_reg PF00072.19 gi|313127395|ref|YP_004037665.1| - 3.5e-12 46.3 0.2 4.2e-11 42.8 0.0 2.4 1 1 2 3 3 3 1 Response regulator receiver domain HisKA PF00512.20 gi|313127395|ref|YP_004037665.1| - 2.2e-06 27.5 0.2 6.3e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|313127395|ref|YP_004037665.1| - 2.9e-05 23.7 0.1 0.0001 21.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|313127395|ref|YP_004037665.1| - 0.029 14.1 0.3 0.084 12.6 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HxlR PF01638.12 gi|313127396|ref|YP_004037666.1| - 2.5e-20 71.8 0.0 6.7e-20 70.5 0.0 1.7 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Response_reg PF00072.19 gi|313127396|ref|YP_004037666.1| - 7.2e-12 45.3 0.1 1.2e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HTH_20 PF12840.2 gi|313127396|ref|YP_004037666.1| - 5.5e-05 22.8 0.1 0.0045 16.7 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|313127396|ref|YP_004037666.1| - 6e-05 22.6 0.2 0.00025 20.6 0.0 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313127396|ref|YP_004037666.1| - 0.00044 19.8 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|313127396|ref|YP_004037666.1| - 0.00046 19.8 0.0 0.0013 18.3 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|313127396|ref|YP_004037666.1| - 0.00053 19.6 0.0 0.0013 18.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313127396|ref|YP_004037666.1| - 0.0066 16.7 0.1 0.025 14.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313127396|ref|YP_004037666.1| - 0.052 13.5 0.0 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HalX PF08663.5 gi|313127396|ref|YP_004037666.1| - 0.053 13.5 0.5 0.4 10.6 0.0 2.4 2 0 0 2 2 2 0 HalX domain PadR PF03551.9 gi|313127396|ref|YP_004037666.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|313127396|ref|YP_004037666.1| - 0.13 11.7 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit zf-ribbon_3 PF13248.1 gi|313127397|ref|YP_004037667.1| - 1e-05 24.5 0.5 1.7e-05 23.8 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TM2 PF05154.11 gi|313127397|ref|YP_004037667.1| - 0.00011 22.3 0.2 0.00017 21.7 0.1 1.3 1 0 0 1 1 1 1 TM2 domain zinc_ribbon_2 PF13240.1 gi|313127397|ref|YP_004037667.1| - 0.00011 21.5 0.9 0.00016 21.0 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|313127397|ref|YP_004037667.1| - 0.00017 21.3 0.3 0.00025 20.7 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|313127397|ref|YP_004037667.1| - 0.063 12.9 1.1 4.9 6.9 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|313127397|ref|YP_004037667.1| - 0.095 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|313127397|ref|YP_004037667.1| - 0.095 12.4 0.5 0.14 11.9 0.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF581 PF04570.9 gi|313127397|ref|YP_004037667.1| - 0.11 11.7 0.3 0.39 10.0 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF581) Cys_rich_CPXG PF14255.1 gi|313127397|ref|YP_004037667.1| - 0.24 11.2 1.4 0.45 10.3 1.0 1.5 1 1 0 1 1 1 0 Cysteine-rich CPXCG Peptidase_C15 PF01470.12 gi|313127398|ref|YP_004037668.1| - 4.4e-55 186.6 0.0 5.4e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Cecropin PF00272.14 gi|313127398|ref|YP_004037668.1| - 0.15 11.6 0.3 0.3 10.6 0.2 1.5 1 0 0 1 1 1 0 Cecropin family Zip PF02535.17 gi|313127399|ref|YP_004037669.1| - 3e-20 72.4 12.6 1e-17 64.1 3.0 2.3 2 1 0 2 2 2 2 ZIP Zinc transporter ABC2_membrane_2 PF12679.2 gi|313127400|ref|YP_004037670.1| - 0.0099 14.7 2.7 0.0097 14.7 1.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein SNase PF00565.12 gi|313127401|ref|YP_004037671.1| - 6.1e-30 103.6 0.0 5.5e-14 52.3 0.0 2.4 2 0 0 2 2 2 2 Staphylococcal nuclease homologue DUF1654 PF07867.6 gi|313127401|ref|YP_004037671.1| - 0.11 11.8 4.1 0.55 9.6 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1654) DUF3940 PF13076.1 gi|313127401|ref|YP_004037671.1| - 0.16 11.5 0.0 2.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3940) Clavanin PF05452.6 gi|313127401|ref|YP_004037671.1| - 0.85 9.6 6.0 8.4 6.4 0.7 2.4 2 0 0 2 2 2 0 Clavanin Cu-oxidase_2 PF07731.9 gi|313127402|ref|YP_004037672.1| - 5.5e-30 103.6 14.0 9.4e-20 70.5 1.4 3.3 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|313127402|ref|YP_004037672.1| - 7.6e-25 86.9 7.0 1.8e-20 72.7 0.6 2.8 2 2 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|313127402|ref|YP_004037672.1| - 1.2e-16 61.0 0.5 9.8e-16 58.0 0.1 2.2 2 1 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.15 gi|313127402|ref|YP_004037672.1| - 6.2e-06 26.3 1.5 0.0044 17.2 0.2 2.6 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313127402|ref|YP_004037672.1| - 0.00075 19.3 0.0 1.2 9.0 0.0 2.8 2 1 0 2 2 2 2 Cupredoxin-like domain Self-incomp_S1 PF05938.6 gi|313127402|ref|YP_004037672.1| - 0.16 12.1 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Plant self-incompatibility protein S1 TAT_signal PF10518.4 gi|313127402|ref|YP_004037672.1| - 0.27 11.3 2.0 0.59 10.2 1.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|313127403|ref|YP_004037673.1| - 2e-19 69.6 0.1 5.7e-11 42.5 0.0 3.4 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family tRNA_NucTransf2 PF09249.6 gi|313127405|ref|YP_004037675.1| - 1.8e-40 137.3 0.0 3.1e-40 136.6 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|313127405|ref|YP_004037675.1| - 4.7e-14 52.4 0.1 1.2e-13 51.1 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain OAS1_C PF10421.4 gi|313127405|ref|YP_004037675.1| - 0.038 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus Hist_deacetyl PF00850.14 gi|313127406|ref|YP_004037676.1| - 6.7e-86 288.3 0.0 8.1e-86 288.1 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain Lipase_GDSL_2 PF13472.1 gi|313127406|ref|YP_004037676.1| - 0.13 12.3 2.4 3.3 7.7 0.2 2.6 1 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family CBFD_NFYB_HMF PF00808.18 gi|313127407|ref|YP_004037677.1| - 1.3e-27 95.6 1.1 2.8e-14 52.9 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|313127407|ref|YP_004037677.1| - 8.7e-17 61.0 1.8 1.2e-10 41.3 0.3 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 TFIID_20kDa PF03847.8 gi|313127407|ref|YP_004037677.1| - 0.00028 21.0 1.0 0.0012 19.1 0.2 2.0 2 0 0 2 2 2 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|313127407|ref|YP_004037677.1| - 0.00045 19.9 0.3 0.062 13.1 0.0 2.2 2 0 0 2 2 2 2 Transcription initiation factor IID, 18kD subunit CENP-S PF15630.1 gi|313127407|ref|YP_004037677.1| - 0.00076 19.6 1.5 0.0018 18.3 0.2 1.9 1 1 1 2 2 2 1 Kinetochore component CENP-S TAF PF02969.12 gi|313127407|ref|YP_004037677.1| - 0.0022 17.8 2.7 0.3 11.0 0.1 2.2 2 0 0 2 2 2 2 TATA box binding protein associated factor (TAF) DUF1931 PF09123.6 gi|313127407|ref|YP_004037677.1| - 0.019 14.9 1.3 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) Toprim_3 PF13362.1 gi|313127407|ref|YP_004037677.1| - 1.5 9.1 4.5 9.5 6.5 0.4 2.5 2 1 0 2 2 2 0 Toprim domain tRNA_anti-codon PF01336.20 gi|313127408|ref|YP_004037678.1| - 6.3e-33 112.4 9.8 1.8e-14 53.3 0.2 4.2 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain SSB PF00436.20 gi|313127408|ref|YP_004037678.1| - 0.001 18.9 0.2 0.047 13.5 0.0 3.4 4 0 0 4 4 4 1 Single-strand binding protein family DUF4539 PF15072.1 gi|313127408|ref|YP_004037678.1| - 0.0026 17.4 0.2 1 9.0 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4539) Rep_fac-A_C PF08646.5 gi|313127408|ref|YP_004037678.1| - 0.0027 17.4 0.2 10 5.8 0.0 3.2 3 0 0 3 3 3 1 Replication factor-A C terminal domain tRNA_anti-like PF12869.2 gi|313127408|ref|YP_004037678.1| - 0.066 12.7 0.1 2.6 7.5 0.0 3.0 3 0 0 3 3 3 0 tRNA_anti-like FKBP_C PF00254.23 gi|313127408|ref|YP_004037678.1| - 0.11 12.5 0.0 7.5 6.6 0.0 2.8 2 0 0 2 2 2 0 FKBP-type peptidyl-prolyl cis-trans isomerase HABP4_PAI-RBP1 PF04774.10 gi|313127408|ref|YP_004037678.1| - 1.1 9.7 3.7 4.3 7.8 0.8 3.0 2 1 0 2 2 2 0 Hyaluronan / mRNA binding family FYVE_2 PF02318.11 gi|313127410|ref|YP_004037680.1| - 0.014 15.2 0.1 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-dskA_traR PF01258.12 gi|313127410|ref|YP_004037680.1| - 0.11 12.2 0.6 9.6 6.0 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Cytochrome_C7 PF14522.1 gi|313127410|ref|YP_004037680.1| - 0.38 10.4 2.2 0.63 9.7 1.5 1.5 1 1 0 1 1 1 0 Cytochrome c7 TrkA_C PF02080.16 gi|313127411|ref|YP_004037681.1| - 4.1e-29 99.9 0.7 1.4e-15 56.5 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|313127411|ref|YP_004037681.1| - 1.1e-13 51.3 8.3 5.7e-07 29.8 2.2 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|313127411|ref|YP_004037681.1| - 0.00013 21.1 3.2 0.11 11.6 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 Ribosomal_L34 PF00468.12 gi|313127411|ref|YP_004037681.1| - 0.056 13.1 3.1 1.6 8.4 0.1 2.4 2 0 0 2 2 2 0 Ribosomal protein L34 bZIP_2 PF07716.10 gi|313127411|ref|YP_004037681.1| - 0.29 10.9 1.2 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Sulfate_tra_GLY PF13792.1 gi|313127412|ref|YP_004037682.1| - 0.013 15.1 0.3 0.026 14.2 0.1 1.6 1 1 0 1 1 1 0 Sulfate transporter N-terminal domain with GLY motif MFS_1 PF07690.11 gi|313127413|ref|YP_004037683.1| - 2.3e-15 56.2 59.2 4.9e-09 35.3 13.0 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily AstE_AspA PF04952.9 gi|313127414|ref|YP_004037684.1| - 1e-56 191.9 0.0 1.2e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.20 gi|313127415|ref|YP_004037685.1| - 3.9e-55 187.2 0.4 4.4e-55 187.0 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|313127415|ref|YP_004037685.1| - 0.097 12.2 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF2892 PF11127.3 gi|313127416|ref|YP_004037686.1| - 5.1e-14 51.8 7.9 1.3e-12 47.3 5.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1772 PF08592.6 gi|313127416|ref|YP_004037686.1| - 0.011 15.5 0.4 0.012 15.3 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) IncA PF04156.9 gi|313127416|ref|YP_004037686.1| - 0.91 9.0 11.0 1 8.9 7.6 1.0 1 0 0 1 1 1 0 IncA protein YtpI PF14007.1 gi|313127416|ref|YP_004037686.1| - 3.5 7.6 5.7 13 5.8 0.5 2.2 1 1 1 2 2 2 0 YtpI-like protein PCMT PF01135.14 gi|313127417|ref|YP_004037687.1| - 7.5e-35 120.3 0.0 9.2e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|313127417|ref|YP_004037687.1| - 4.8e-07 29.3 0.0 7.9e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|313127417|ref|YP_004037687.1| - 2.3e-06 28.1 0.0 5e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127417|ref|YP_004037687.1| - 3.4e-05 23.8 1.5 9e-05 22.4 0.4 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313127417|ref|YP_004037687.1| - 0.00084 18.9 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|313127417|ref|YP_004037687.1| - 0.0013 17.8 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.12 gi|313127417|ref|YP_004037687.1| - 0.0023 16.9 0.1 0.0032 16.4 0.1 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_12 PF08242.7 gi|313127417|ref|YP_004037687.1| - 0.0026 18.2 0.0 0.0053 17.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|313127417|ref|YP_004037687.1| - 0.0031 17.1 0.0 0.0045 16.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|313127417|ref|YP_004037687.1| - 0.0055 15.8 0.3 0.0076 15.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) HEM4 PF02602.10 gi|313127417|ref|YP_004037687.1| - 0.0089 15.2 0.1 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Spermine_synth PF01564.12 gi|313127417|ref|YP_004037687.1| - 0.035 13.0 0.0 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase Methyltransf_11 PF08241.7 gi|313127417|ref|YP_004037687.1| - 0.059 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313127417|ref|YP_004037687.1| - 0.081 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF2387 PF09526.5 gi|313127419|ref|YP_004037689.1| - 0.00084 19.2 2.6 0.0017 18.2 1.8 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|313127419|ref|YP_004037689.1| - 0.0013 18.2 1.3 0.0027 17.2 0.9 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313127419|ref|YP_004037689.1| - 0.013 15.1 2.6 0.03 14.0 1.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|313127419|ref|YP_004037689.1| - 0.016 15.5 1.0 0.045 14.0 0.7 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|313127419|ref|YP_004037689.1| - 0.26 11.0 1.6 0.52 10.0 1.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-CSL PF05207.8 gi|313127419|ref|YP_004037689.1| - 1.5 8.4 5.4 5.6 6.5 0.1 2.7 1 1 1 2 2 2 0 CSL zinc finger Zn_Tnp_IS1 PF03811.8 gi|313127419|ref|YP_004037689.1| - 8.9 5.8 7.2 16 5.0 3.4 2.5 2 1 1 3 3 3 0 InsA N-terminal domain Peptidase_M29 PF02073.10 gi|313127420|ref|YP_004037690.1| - 5e-19 68.3 0.8 9.4e-17 60.8 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_N PF00044.19 gi|313127421|ref|YP_004037691.1| - 1.8e-19 70.1 0.0 5e-19 68.7 0.0 1.8 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|313127421|ref|YP_004037691.1| - 2.5e-17 62.7 0.0 4.1e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|313127421|ref|YP_004037691.1| - 7.8e-09 35.5 0.1 1.9e-08 34.2 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|313127421|ref|YP_004037691.1| - 2.5e-06 27.8 0.0 1.3e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|313127421|ref|YP_004037691.1| - 0.0027 18.0 0.0 0.0098 16.1 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|313127421|ref|YP_004037691.1| - 0.0049 16.0 0.2 0.051 12.7 0.0 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Metallophos_2 PF12850.2 gi|313127422|ref|YP_004037692.1| - 6.6e-29 100.7 1.1 7.4e-29 100.5 0.7 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313127422|ref|YP_004037692.1| - 8.8e-08 31.7 2.8 0.00071 19.0 0.2 2.6 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|313127422|ref|YP_004037692.1| - 0.012 14.8 0.0 0.3 10.2 0.0 2.0 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily PGK PF00162.14 gi|313127423|ref|YP_004037693.1| - 1.7e-112 375.8 0.1 2e-112 375.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.15 gi|313127424|ref|YP_004037694.1| - 2.7e-59 199.1 0.0 3.6e-59 198.7 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|313127424|ref|YP_004037694.1| - 3e-52 176.6 0.0 4.3e-52 176.0 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|313127424|ref|YP_004037694.1| - 0.00079 19.3 0.1 0.002 18.0 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|313127424|ref|YP_004037694.1| - 0.032 14.6 0.0 0.073 13.4 0.0 1.6 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|313127424|ref|YP_004037694.1| - 0.11 12.9 0.1 0.25 11.8 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold HSP20 PF00011.16 gi|313127425|ref|YP_004037695.1| - 6.8e-10 38.7 0.0 1.9e-08 34.0 0.0 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|313127425|ref|YP_004037695.1| - 0.00048 19.8 0.5 0.00058 19.5 0.3 1.2 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|313127425|ref|YP_004037695.1| - 0.042 13.2 0.0 0.051 13.0 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 RimK PF08443.6 gi|313127426|ref|YP_004037696.1| - 2.7e-31 108.5 0.0 3.6e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|313127426|ref|YP_004037696.1| - 3.4e-17 62.7 0.0 5.2e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|313127426|ref|YP_004037696.1| - 4.2e-12 45.5 0.0 6.1e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|313127426|ref|YP_004037696.1| - 2.1e-08 34.2 0.0 4.1e-08 33.2 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|313127426|ref|YP_004037696.1| - 1.8e-07 30.7 0.0 3.9e-07 29.6 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|313127426|ref|YP_004037696.1| - 2.3e-06 26.5 0.0 4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|313127426|ref|YP_004037696.1| - 0.00037 19.8 0.0 0.00048 19.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|313127426|ref|YP_004037696.1| - 0.021 13.9 0.0 0.039 13.0 0.0 1.4 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp DUF1446 PF07287.6 gi|313127426|ref|YP_004037696.1| - 0.036 12.5 0.0 0.05 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1446) Btz PF09405.5 gi|313127426|ref|YP_004037696.1| - 0.036 14.0 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 CASC3/Barentsz eIF4AIII binding Ribosomal_L16 PF00252.13 gi|313127427|ref|YP_004037697.1| - 2e-28 98.8 0.0 2.3e-28 98.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e GATase PF00117.23 gi|313127428|ref|YP_004037698.1| - 5.2e-18 65.2 0.0 6.6e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313127428|ref|YP_004037698.1| - 1.4e-09 37.7 0.0 2.6e-08 33.5 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|313127428|ref|YP_004037698.1| - 0.016 14.8 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF91 PF01939.11 gi|313127429|ref|YP_004037699.1| - 3e-68 229.4 0.0 3.5e-68 229.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 Redoxin PF08534.5 gi|313127429|ref|YP_004037699.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Redoxin Pyridox_ox_2 PF12900.2 gi|313127430|ref|YP_004037700.1| - 1.6e-18 66.8 0.0 1.8e-18 66.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|313127430|ref|YP_004037700.1| - 4.8e-08 32.9 0.0 5.9e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase VanZ PF04892.7 gi|313127431|ref|YP_004037701.1| - 4.3e-11 42.8 0.4 5.1e-11 42.6 0.3 1.1 1 0 0 1 1 1 1 VanZ like family DUF2279 PF10043.4 gi|313127431|ref|YP_004037701.1| - 0.0048 17.1 0.1 0.006 16.8 0.1 1.2 1 0 0 1 1 1 1 Predicted periplasmic lipoprotein (DUF2279) CSD PF00313.17 gi|313127432|ref|YP_004037702.1| - 1.3e-19 69.7 0.1 1.4e-19 69.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|313127432|ref|YP_004037702.1| - 0.018 14.7 0.3 0.023 14.4 0.2 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|313127432|ref|YP_004037702.1| - 0.039 13.4 2.6 0.051 13.0 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain ParBc PF02195.13 gi|313127433|ref|YP_004037703.1| - 0.0057 16.7 0.0 0.023 14.7 0.0 2.0 1 1 0 1 1 1 1 ParB-like nuclease domain Acetyltransf_4 PF13420.1 gi|313127436|ref|YP_004037706.1| - 1.9e-14 53.8 0.1 2.8e-14 53.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313127436|ref|YP_004037706.1| - 1.1e-11 44.6 0.1 1.9e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|313127436|ref|YP_004037706.1| - 3.5e-07 30.2 0.0 6.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313127436|ref|YP_004037706.1| - 1e-06 28.8 0.1 2.7e-06 27.4 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313127436|ref|YP_004037706.1| - 2.9e-06 27.1 0.2 9e-06 25.5 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|313127436|ref|YP_004037706.1| - 3.8e-06 26.6 0.4 1.8e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|313127436|ref|YP_004037706.1| - 7.3e-06 26.1 0.1 1.3e-05 25.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|313127436|ref|YP_004037706.1| - 0.00033 20.2 0.0 0.00058 19.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|313127436|ref|YP_004037706.1| - 0.0023 17.9 1.8 0.13 12.2 0.0 2.9 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313127436|ref|YP_004037706.1| - 0.052 13.4 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.1 gi|313127436|ref|YP_004037706.1| - 0.066 12.7 0.1 0.23 11.0 0.0 1.8 1 0 0 1 1 1 0 UBA-like domain CARDB PF07705.6 gi|313127438|ref|YP_004037708.1| - 0.0057 16.6 1.8 0.012 15.6 1.2 1.6 1 1 0 1 1 1 1 CARDB DUF11 PF01345.13 gi|313127438|ref|YP_004037708.1| - 0.0058 16.6 0.7 0.0058 16.6 0.5 2.3 3 0 0 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|313127438|ref|YP_004037708.1| - 0.024 14.6 0.7 0.024 14.6 0.5 2.4 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Phage_holin_3 PF05106.7 gi|313127440|ref|YP_004037710.1| - 0.016 15.1 0.1 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Phage holin family (Lysis protein S) LrgA PF03788.9 gi|313127440|ref|YP_004037710.1| - 0.025 14.2 0.1 0.037 13.7 0.1 1.2 1 0 0 1 1 1 0 LrgA family TOBE_2 PF08402.5 gi|313127441|ref|YP_004037711.1| - 0.12 12.3 0.2 0.55 10.2 0.0 2.3 2 0 0 2 2 2 0 TOBE domain DUF192 PF02643.10 gi|313127442|ref|YP_004037712.1| - 6.2e-29 99.8 0.0 7.7e-29 99.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 ABC_tran PF00005.22 gi|313127444|ref|YP_004037714.1| - 1.7e-37 128.8 0.0 3e-37 127.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|313127444|ref|YP_004037714.1| - 1.8e-32 112.8 5.0 2.6e-32 112.3 3.5 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|313127444|ref|YP_004037714.1| - 8e-06 26.0 0.0 0.00014 21.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313127444|ref|YP_004037714.1| - 4e-05 24.4 0.1 0.00012 22.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|313127444|ref|YP_004037714.1| - 0.00031 19.9 0.0 0.00056 19.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|313127444|ref|YP_004037714.1| - 0.00033 20.8 0.1 0.0015 18.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313127444|ref|YP_004037714.1| - 0.00044 20.2 0.0 0.00091 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|313127444|ref|YP_004037714.1| - 0.0011 18.1 0.0 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|313127444|ref|YP_004037714.1| - 0.0012 19.1 0.0 0.0031 17.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313127444|ref|YP_004037714.1| - 0.0018 17.7 0.0 0.0049 16.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313127444|ref|YP_004037714.1| - 0.0051 16.0 0.8 0.16 11.2 0.1 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|313127444|ref|YP_004037714.1| - 0.016 15.3 0.0 0.1 12.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|313127444|ref|YP_004037714.1| - 0.033 12.8 0.2 0.063 11.8 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|313127444|ref|YP_004037714.1| - 0.037 13.8 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313127444|ref|YP_004037714.1| - 0.043 13.3 0.3 0.19 11.2 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313127444|ref|YP_004037714.1| - 0.052 13.4 0.0 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|313127444|ref|YP_004037714.1| - 0.058 12.8 0.4 0.18 11.1 0.3 1.9 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|313127444|ref|YP_004037714.1| - 0.094 12.4 0.0 1.1 8.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|313127444|ref|YP_004037714.1| - 0.099 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain FA_desaturase PF00487.19 gi|313127444|ref|YP_004037714.1| - 0.75 9.1 8.4 0.024 14.0 1.4 1.7 2 0 0 2 2 2 0 Fatty acid desaturase Creatininase PF02633.9 gi|313127445|ref|YP_004037715.1| - 7.3e-72 241.2 4.1 8.3e-72 241.0 2.9 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase CBS PF00571.23 gi|313127445|ref|YP_004037715.1| - 0.005 16.5 0.5 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 CBS domain DUF883 PF05957.8 gi|313127446|ref|YP_004037716.1| - 0.0026 18.1 7.2 0.21 11.9 0.0 2.8 3 1 0 3 3 3 2 Bacterial protein of unknown function (DUF883) AATF-Che1 PF13339.1 gi|313127446|ref|YP_004037716.1| - 0.26 11.4 2.2 2.2 8.4 1.0 2.1 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Syntaxin-6_N PF09177.6 gi|313127446|ref|YP_004037716.1| - 0.7 10.3 4.2 4.2 7.8 0.6 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal PilJ PF13675.1 gi|313127446|ref|YP_004037716.1| - 0.72 10.1 6.2 0.46 10.8 1.7 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term SlyX PF04102.7 gi|313127446|ref|YP_004037716.1| - 0.79 10.1 3.9 0.4 11.0 0.9 1.8 2 0 0 2 2 2 0 SlyX DUF1840 PF08895.6 gi|313127446|ref|YP_004037716.1| - 3.1 7.8 6.3 0.8 9.7 1.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1840) TPR_14 PF13428.1 gi|313127446|ref|YP_004037716.1| - 8.6 7.3 9.7 18 6.3 0.0 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF372 PF04036.7 gi|313127447|ref|YP_004037717.1| - 1.3e-22 78.9 1.3 4.6e-22 77.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|313127447|ref|YP_004037717.1| - 6.1e-21 74.2 0.4 8e-21 73.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|313127447|ref|YP_004037717.1| - 0.0049 16.3 0.0 0.0061 16.0 0.0 1.2 1 0 0 1 1 1 1 Gene 25-like lysozyme HEM4 PF02602.10 gi|313127447|ref|YP_004037717.1| - 0.023 13.9 0.0 0.026 13.7 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Epimerase PF01370.16 gi|313127448|ref|YP_004037718.1| - 3e-19 69.4 0.0 4e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313127448|ref|YP_004037718.1| - 7.5e-17 60.9 0.0 9.2e-17 60.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|313127448|ref|YP_004037718.1| - 3.6e-12 46.6 0.0 5.2e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|313127448|ref|YP_004037718.1| - 1e-10 41.0 0.2 8.7e-08 31.3 0.3 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|313127448|ref|YP_004037718.1| - 1.7e-10 40.2 0.0 1.9e-09 36.8 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|313127448|ref|YP_004037718.1| - 2e-06 27.8 0.0 3.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|313127448|ref|YP_004037718.1| - 8.1e-05 21.6 0.0 0.00024 20.0 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|313127448|ref|YP_004037718.1| - 0.00014 21.2 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|313127448|ref|YP_004037718.1| - 0.00032 19.7 0.0 0.00039 19.5 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase KR PF08659.5 gi|313127448|ref|YP_004037718.1| - 0.052 13.2 1.2 0.32 10.6 0.8 2.1 1 1 0 1 1 1 0 KR domain DUF309 PF03745.9 gi|313127449|ref|YP_004037719.1| - 6e-17 60.8 3.2 8.7e-17 60.3 2.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Citrate_synt PF00285.16 gi|313127450|ref|YP_004037720.1| - 6.8e-134 446.0 0.0 7.7e-134 445.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase AIG2 PF06094.7 gi|313127451|ref|YP_004037721.1| - 1.1e-09 38.7 0.1 1.5e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|313127451|ref|YP_004037721.1| - 0.058 13.5 0.0 0.095 12.8 0.0 1.3 1 0 0 1 1 1 0 AIG2-like family PALP PF00291.20 gi|313127452|ref|YP_004037722.1| - 4.6e-80 269.1 5.3 5.4e-80 268.8 3.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|313127452|ref|YP_004037722.1| - 1.1e-06 28.8 0.3 9.7e-06 25.8 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|313127452|ref|YP_004037722.1| - 0.00012 21.5 0.0 0.00056 19.3 0.0 2.2 1 0 0 1 1 1 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|313127452|ref|YP_004037722.1| - 0.0012 17.9 0.2 0.0053 15.8 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family CagE_TrbE_VirB PF03135.9 gi|313127452|ref|YP_004037722.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system NikR_C PF08753.6 gi|313127452|ref|YP_004037722.1| - 0.085 12.7 0.3 0.31 10.9 0.0 2.0 2 0 0 2 2 2 0 NikR C terminal nickel binding domain Bac_Ubq_Cox PF01654.12 gi|313127453|ref|YP_004037723.1| - 2.8e-135 451.1 26.5 3.2e-135 450.9 18.3 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase JSRP PF15312.1 gi|313127453|ref|YP_004037723.1| - 0.021 14.7 0.1 0.058 13.3 0.0 1.8 2 0 0 2 2 2 0 Junctional sarcoplasmic reticulum protein DUF4381 PF14316.1 gi|313127453|ref|YP_004037723.1| - 0.43 10.6 3.1 18 5.3 0.0 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4381) Cyto_ox_2 PF02322.10 gi|313127454|ref|YP_004037724.1| - 1e-73 248.4 27.9 1.4e-73 247.9 19.3 1.2 1 0 0 1 1 1 1 Cytochrome oxidase subunit II Ribonuc_L-PSP PF01042.16 gi|313127455|ref|YP_004037725.1| - 6.7e-39 132.3 0.0 7.5e-39 132.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF4488 PF14869.1 gi|313127455|ref|YP_004037725.1| - 0.049 13.2 0.0 0.053 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) YjgF_endoribonc PF14588.1 gi|313127455|ref|YP_004037725.1| - 0.052 13.4 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease Sulfate_tra_GLY PF13792.1 gi|313127456|ref|YP_004037726.1| - 0.1 12.2 4.0 0.15 11.7 2.8 1.2 1 0 0 1 1 1 0 Sulfate transporter N-terminal domain with GLY motif DUF2628 PF10947.3 gi|313127456|ref|YP_004037726.1| - 0.88 9.4 3.7 1 9.2 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF347 PF03988.7 gi|313127456|ref|YP_004037726.1| - 7.2 6.5 10.1 0.92 9.4 2.6 2.0 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) Cpn60_TCP1 PF00118.19 gi|313127459|ref|YP_004037729.1| - 1.6e-154 515.1 8.7 1.8e-154 515.0 6.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4559 PF15112.1 gi|313127459|ref|YP_004037729.1| - 0.069 12.3 3.2 1.7 7.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) OCD_Mu_crystall PF02423.10 gi|313127460|ref|YP_004037730.1| - 1.3e-96 323.1 1.2 1.5e-96 322.9 0.8 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|313127460|ref|YP_004037730.1| - 0.0084 16.2 0.1 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ExoD PF06055.7 gi|313127461|ref|YP_004037731.1| - 0.043 12.9 0.4 0.045 12.8 0.3 1.1 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD CybS PF05328.7 gi|313127461|ref|YP_004037731.1| - 0.05 13.2 0.0 0.056 13.0 0.0 1.0 1 0 0 1 1 1 0 CybS tRNA-synt_1 PF00133.17 gi|313127462|ref|YP_004037732.1| - 1.9e-53 181.4 0.5 9.9e-39 132.8 0.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|313127462|ref|YP_004037732.1| - 7.4e-25 87.4 3.4 5.2e-11 41.8 0.1 3.7 3 1 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|313127462|ref|YP_004037732.1| - 1.6e-21 76.6 0.1 3.7e-21 75.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|313127462|ref|YP_004037732.1| - 4.7e-09 35.8 0.0 9.2e-09 34.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|313127462|ref|YP_004037732.1| - 0.00021 20.5 0.0 0.46 9.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|313127462|ref|YP_004037732.1| - 0.0011 17.6 0.0 0.021 13.5 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) HSP20 PF00011.16 gi|313127463|ref|YP_004037733.1| - 3e-21 75.2 0.4 3.9e-21 74.8 0.3 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|313127463|ref|YP_004037733.1| - 0.00011 21.8 2.9 0.0008 19.0 1.5 2.2 1 1 1 2 2 2 1 GvpH CS PF04969.11 gi|313127463|ref|YP_004037733.1| - 0.098 13.2 0.0 0.21 12.1 0.0 1.5 1 1 0 1 1 1 0 CS domain HSP20 PF00011.16 gi|313127464|ref|YP_004037734.1| - 5.9e-23 80.6 0.8 7.1e-23 80.4 0.6 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|313127464|ref|YP_004037734.1| - 0.0079 16.7 0.0 0.015 15.8 0.0 1.5 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|313127464|ref|YP_004037734.1| - 0.013 15.1 2.7 0.083 12.5 1.9 2.0 1 1 0 1 1 1 0 GvpH YL1 PF05764.8 gi|313127464|ref|YP_004037734.1| - 0.023 14.2 2.2 0.027 14.0 1.5 1.2 1 0 0 1 1 1 0 YL1 nuclear protein PDT PF00800.13 gi|313127465|ref|YP_004037735.1| - 1.1e-46 158.6 0.2 1.5e-46 158.2 0.2 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|313127465|ref|YP_004037735.1| - 3.5e-07 29.5 0.0 1.4e-06 27.6 0.0 2.1 1 0 0 1 1 1 1 ACT domain DUF77 PF01910.12 gi|313127465|ref|YP_004037735.1| - 0.12 12.0 0.1 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF77 TIP39 PF14980.1 gi|313127465|ref|YP_004037735.1| - 0.13 11.9 0.2 0.32 10.6 0.2 1.7 1 0 0 1 1 1 0 TIP39 peptide GATase PF00117.23 gi|313127466|ref|YP_004037736.1| - 4.2e-35 120.9 0.0 4.9e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|313127466|ref|YP_004037736.1| - 9.2e-10 38.3 0.0 2.5e-09 36.9 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|313127466|ref|YP_004037736.1| - 8.3e-08 32.0 0.0 0.00032 20.3 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|313127466|ref|YP_004037736.1| - 1.5e-06 27.8 0.3 7.5e-06 25.5 0.2 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|313127466|ref|YP_004037736.1| - 0.00013 21.4 0.0 0.00022 20.6 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.1 gi|313127466|ref|YP_004037736.1| - 0.095 11.5 0.0 0.49 9.2 0.0 2.2 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|313127466|ref|YP_004037736.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Phosphonate-bd PF12974.2 gi|313127467|ref|YP_004037737.1| - 5.9e-59 199.3 0.7 7.1e-59 199.1 0.5 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|313127467|ref|YP_004037737.1| - 0.0002 21.0 0.1 0.00037 20.1 0.1 1.4 1 0 0 1 1 1 1 NMT1/THI5 like TAT_signal PF10518.4 gi|313127467|ref|YP_004037737.1| - 0.0049 16.7 1.1 0.0049 16.7 0.8 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence OpuAC PF04069.7 gi|313127467|ref|YP_004037737.1| - 0.037 13.3 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system ABC_tran PF00005.22 gi|313127468|ref|YP_004037738.1| - 4.5e-34 117.7 0.0 6e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313127468|ref|YP_004037738.1| - 5.4e-09 36.4 0.0 0.00095 19.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|313127468|ref|YP_004037738.1| - 4.4e-06 25.9 0.0 7e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313127468|ref|YP_004037738.1| - 2.8e-05 24.1 1.0 0.00018 21.5 0.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|313127468|ref|YP_004037738.1| - 0.00013 21.1 0.0 0.2 10.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|313127468|ref|YP_004037738.1| - 0.00023 20.6 0.0 0.00049 19.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313127468|ref|YP_004037738.1| - 0.00052 19.3 0.0 0.081 12.1 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|313127468|ref|YP_004037738.1| - 0.003 17.4 0.0 0.0085 16.0 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|313127468|ref|YP_004037738.1| - 0.0036 16.4 0.1 0.0087 15.1 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin AAA_22 PF13401.1 gi|313127468|ref|YP_004037738.1| - 0.0062 16.6 0.2 0.033 14.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|313127468|ref|YP_004037738.1| - 0.0088 15.9 0.4 0.15 11.9 0.3 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313127468|ref|YP_004037738.1| - 0.011 15.0 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|313127468|ref|YP_004037738.1| - 0.012 15.9 0.0 0.021 15.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|313127468|ref|YP_004037738.1| - 0.026 14.9 0.0 0.18 12.3 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_30 PF13604.1 gi|313127468|ref|YP_004037738.1| - 0.038 13.5 0.0 0.097 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313127468|ref|YP_004037738.1| - 0.041 13.0 0.0 0.06 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|313127468|ref|YP_004037738.1| - 0.054 12.9 0.2 0.26 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|313127468|ref|YP_004037738.1| - 0.062 12.9 0.1 0.16 11.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 G-alpha PF00503.15 gi|313127468|ref|YP_004037738.1| - 0.071 11.7 0.0 0.071 11.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_13 PF13166.1 gi|313127468|ref|YP_004037738.1| - 0.095 11.1 0.0 2.9 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|313127468|ref|YP_004037738.1| - 0.13 11.9 0.1 0.31 10.7 0.1 1.6 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.17 gi|313127469|ref|YP_004037739.1| - 1.7e-06 27.6 9.7 1.7e-06 27.6 6.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UDG PF03167.14 gi|313127470|ref|YP_004037740.1| - 4.5e-35 120.3 0.0 5.6e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF1127 PF06568.6 gi|313127470|ref|YP_004037740.1| - 0.031 13.6 0.6 0.096 12.1 0.4 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) DUF99 PF01949.11 gi|313127471|ref|YP_004037741.1| - 2.2e-48 163.8 0.0 2.6e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF4162 PF13732.1 gi|313127472|ref|YP_004037742.1| - 0.12 12.9 0.6 0.13 12.8 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Tom22 PF04281.8 gi|313127472|ref|YP_004037742.1| - 0.12 11.9 5.1 0.14 11.6 3.5 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 TFIIA PF03153.8 gi|313127472|ref|YP_004037742.1| - 2.2 8.1 11.7 2.4 7.9 8.1 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Lactamase_B PF00753.22 gi|313127473|ref|YP_004037743.1| - 1.4e-22 80.3 3.3 1.8e-22 79.9 2.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313127473|ref|YP_004037743.1| - 3.1e-05 23.6 1.1 4.6e-05 23.0 0.7 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313127473|ref|YP_004037743.1| - 0.013 15.2 0.8 0.032 13.9 0.5 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ribosomal_L40e PF01020.12 gi|313127474|ref|YP_004037744.1| - 5.1e-08 32.3 6.4 5.7e-08 32.2 4.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|313127474|ref|YP_004037744.1| - 0.00032 20.4 1.8 0.00035 20.3 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|313127474|ref|YP_004037744.1| - 0.00049 19.5 1.7 0.0005 19.5 1.2 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|313127474|ref|YP_004037744.1| - 0.0013 18.1 1.1 0.0018 17.6 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313127474|ref|YP_004037744.1| - 0.011 14.8 1.6 0.014 14.6 1.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|313127474|ref|YP_004037744.1| - 0.06 12.8 4.6 0.15 11.5 3.2 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|313127474|ref|YP_004037744.1| - 0.16 11.0 4.9 0.59 9.2 3.4 1.9 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others RNA_POL_M_15KD PF02150.11 gi|313127474|ref|YP_004037744.1| - 0.45 10.2 5.7 0.57 9.9 0.8 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Thioredoxin PF00085.15 gi|313127475|ref|YP_004037745.1| - 8.1e-24 83.3 0.0 9e-24 83.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|313127475|ref|YP_004037745.1| - 2.1e-07 31.1 0.1 2e-06 27.9 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|313127475|ref|YP_004037745.1| - 3.7e-07 30.1 0.0 0.00083 19.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|313127475|ref|YP_004037745.1| - 5.5e-06 26.0 0.0 5.9e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|313127475|ref|YP_004037745.1| - 7.4e-06 25.5 0.0 9.2e-06 25.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|313127475|ref|YP_004037745.1| - 4.8e-05 22.9 0.3 0.0043 16.5 0.0 2.0 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.16 gi|313127475|ref|YP_004037745.1| - 0.00024 20.7 0.4 0.2 11.3 0.1 2.1 1 1 1 2 2 2 2 AhpC/TSA family Glutaredoxin PF00462.19 gi|313127475|ref|YP_004037745.1| - 0.00073 19.4 0.3 0.0015 18.5 0.1 1.6 1 1 1 2 2 2 1 Glutaredoxin DSBA PF01323.15 gi|313127475|ref|YP_004037745.1| - 0.0012 18.4 0.2 0.074 12.6 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain DUF836 PF05768.9 gi|313127475|ref|YP_004037745.1| - 0.0033 17.6 0.2 0.0037 17.4 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.1 gi|313127475|ref|YP_004037745.1| - 0.028 13.8 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_7 PF13899.1 gi|313127475|ref|YP_004037745.1| - 0.028 14.4 1.3 0.055 13.4 0.1 2.0 2 1 0 2 2 2 0 Thioredoxin-like HyaE PF07449.6 gi|313127475|ref|YP_004037745.1| - 0.051 13.4 0.0 0.059 13.2 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Phosducin PF02114.11 gi|313127475|ref|YP_004037745.1| - 0.063 11.9 0.0 0.066 11.9 0.0 1.0 1 0 0 1 1 1 0 Phosducin Thioredoxin_5 PF13743.1 gi|313127475|ref|YP_004037745.1| - 0.12 11.8 0.2 0.19 11.2 0.1 1.5 1 1 1 2 2 2 0 Thioredoxin Sec61_beta PF03911.11 gi|313127476|ref|YP_004037746.1| - 3.1e-07 30.0 0.0 4.1e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family SNO PF01174.14 gi|313127477|ref|YP_004037747.1| - 5.8e-55 185.8 0.0 6.4e-55 185.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|313127477|ref|YP_004037747.1| - 9.8e-11 41.4 0.0 3.4e-10 39.7 0.0 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|313127477|ref|YP_004037747.1| - 3.1e-06 26.9 0.0 4.3e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|313127477|ref|YP_004037747.1| - 0.00014 21.3 0.0 0.00052 19.5 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|313127477|ref|YP_004037747.1| - 0.00024 20.6 0.0 0.00033 20.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.4 gi|313127477|ref|YP_004037747.1| - 0.002 17.0 0.0 0.024 13.4 0.0 2.3 2 1 0 2 2 2 1 Biotin-protein ligase, N terminal DUF4066 PF13278.1 gi|313127477|ref|YP_004037747.1| - 0.034 13.4 0.1 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative amidotransferase Aconitase PF00330.15 gi|313127477|ref|YP_004037747.1| - 0.11 10.8 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) PRA-PH PF01503.12 gi|313127478|ref|YP_004037748.1| - 1.3e-11 44.5 1.5 1.6e-11 44.3 1.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|313127478|ref|YP_004037748.1| - 0.22 11.4 2.9 0.35 10.8 2.0 1.3 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain RA PF00788.18 gi|313127479|ref|YP_004037749.1| - 0.12 12.8 0.0 0.23 11.9 0.0 1.5 1 1 0 1 1 1 0 Ras association (RalGDS/AF-6) domain F420_oxidored PF03807.12 gi|313127480|ref|YP_004037750.1| - 3.1e-22 78.8 0.0 5.2e-22 78.0 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|313127480|ref|YP_004037750.1| - 0.00021 21.0 0.0 0.00035 20.3 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|313127480|ref|YP_004037750.1| - 0.00071 18.5 0.0 0.00095 18.1 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.19 gi|313127480|ref|YP_004037750.1| - 0.0028 17.9 0.0 0.0043 17.3 0.0 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|313127480|ref|YP_004037750.1| - 0.0028 17.3 0.8 0.035 13.7 0.0 2.2 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|313127480|ref|YP_004037750.1| - 0.0039 17.2 0.5 0.0073 16.3 0.2 1.7 1 1 1 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|313127480|ref|YP_004037750.1| - 0.0089 15.9 6.5 0.026 14.4 0.1 2.8 1 1 2 3 3 3 1 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|313127480|ref|YP_004037750.1| - 0.014 15.9 0.0 0.028 14.9 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.11 gi|313127480|ref|YP_004037750.1| - 0.018 14.5 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Bac_luciferase PF00296.15 gi|313127480|ref|YP_004037750.1| - 0.047 12.8 3.6 0.026 13.6 1.2 1.6 2 1 0 2 2 2 0 Luciferase-like monooxygenase HAD_2 PF13419.1 gi|313127483|ref|YP_004037753.1| - 2.1e-11 44.3 1.5 3.4e-09 37.1 1.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|313127483|ref|YP_004037753.1| - 8.8e-07 29.5 0.1 3.5e-06 27.5 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313127483|ref|YP_004037753.1| - 8.9e-06 25.3 0.6 3.8e-05 23.3 0.2 2.3 2 1 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|313127483|ref|YP_004037753.1| - 0.012 15.7 0.1 0.024 14.7 0.1 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase UPF0146 PF03686.8 gi|313127484|ref|YP_004037754.1| - 4.8e-18 65.1 0.0 8.1e-18 64.4 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0146) Nucleotid_trans PF03407.11 gi|313127484|ref|YP_004037754.1| - 0.16 11.7 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Nucleotide-diphospho-sugar transferase Peptidase_M54 PF07998.6 gi|313127485|ref|YP_004037755.1| - 7e-23 81.4 0.0 8.8e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|313127485|ref|YP_004037755.1| - 5.8e-06 26.4 0.0 6.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|313127485|ref|YP_004037755.1| - 9.6e-06 25.2 0.0 1.2e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|313127485|ref|YP_004037755.1| - 3.3e-05 23.6 0.1 6.7e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|313127485|ref|YP_004037755.1| - 0.00011 22.6 0.0 0.00014 22.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|313127485|ref|YP_004037755.1| - 0.00028 20.8 0.1 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|313127485|ref|YP_004037755.1| - 0.0058 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Possibl zinc metallo-peptidase Peptidase_M66 PF10462.4 gi|313127485|ref|YP_004037755.1| - 0.015 14.2 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.3 gi|313127485|ref|YP_004037755.1| - 0.019 13.4 0.2 0.029 12.8 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.8 gi|313127485|ref|YP_004037755.1| - 0.022 14.3 0.0 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin PF01421.14 gi|313127485|ref|YP_004037755.1| - 0.026 14.1 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease DUF4374 PF14298.1 gi|313127485|ref|YP_004037755.1| - 0.046 12.3 0.1 0.06 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4374) Peptidase_M57 PF12388.3 gi|313127485|ref|YP_004037755.1| - 0.053 12.8 0.1 0.097 11.9 0.0 1.6 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase TIR-like PF10137.4 gi|313127485|ref|YP_004037755.1| - 0.13 11.8 0.0 0.52 9.9 0.0 1.9 1 1 1 2 2 2 0 Predicted nucleotide-binding protein containing TIR-like domain Usp PF00582.21 gi|313127486|ref|YP_004037756.1| - 9e-29 100.4 1.4 9.8e-29 100.3 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family RTC PF01137.16 gi|313127487|ref|YP_004037757.1| - 2.4e-70 235.8 0.0 3.1e-70 235.5 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|313127487|ref|YP_004037757.1| - 9.5e-13 48.0 1.1 1.7e-12 47.2 0.7 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain ABC_tran PF00005.22 gi|313127488|ref|YP_004037758.1| - 3.8e-41 140.5 0.0 5.8e-20 71.9 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|313127488|ref|YP_004037758.1| - 2.8e-17 63.6 0.0 0.00019 21.5 0.0 4.2 3 1 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|313127488|ref|YP_004037758.1| - 4.4e-15 55.5 1.6 0.00026 20.3 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|313127488|ref|YP_004037758.1| - 1.1e-12 47.2 0.8 2.2e-12 46.3 0.6 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|313127488|ref|YP_004037758.1| - 4.8e-09 37.0 0.6 0.003 18.3 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|313127488|ref|YP_004037758.1| - 1.4e-07 31.1 0.7 0.12 11.8 0.0 3.8 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|313127488|ref|YP_004037758.1| - 3.7e-07 30.6 0.2 0.021 15.1 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|313127488|ref|YP_004037758.1| - 1.7e-06 28.2 0.2 0.0093 16.1 0.0 3.2 3 1 0 3 3 3 2 AAA domain AAA PF00004.24 gi|313127488|ref|YP_004037758.1| - 3.7e-06 27.1 0.0 0.03 14.5 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|313127488|ref|YP_004037758.1| - 2.2e-05 23.8 0.2 0.12 11.9 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313127488|ref|YP_004037758.1| - 3.9e-05 23.7 1.2 0.33 10.9 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain NACHT PF05729.7 gi|313127488|ref|YP_004037758.1| - 6.6e-05 22.6 0.0 0.09 12.4 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_14 PF13173.1 gi|313127488|ref|YP_004037758.1| - 7.4e-05 22.6 0.0 0.46 10.4 0.0 3.5 3 1 1 4 4 3 1 AAA domain RNA_helicase PF00910.17 gi|313127488|ref|YP_004037758.1| - 0.00021 21.4 0.0 1.2 9.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Fer4 PF00037.22 gi|313127488|ref|YP_004037758.1| - 0.00073 19.0 2.4 0.00073 19.0 1.7 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain DUF258 PF03193.11 gi|313127488|ref|YP_004037758.1| - 0.00082 18.5 0.0 0.5 9.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|313127488|ref|YP_004037758.1| - 0.00084 19.2 0.4 0.94 9.3 0.4 3.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|313127488|ref|YP_004037758.1| - 0.0012 19.1 0.0 1.9 8.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|313127488|ref|YP_004037758.1| - 0.0016 17.3 0.1 0.17 10.7 0.2 2.2 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.9 gi|313127488|ref|YP_004037758.1| - 0.0024 17.5 0.3 0.83 9.3 0.0 2.8 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|313127488|ref|YP_004037758.1| - 0.0026 16.8 0.0 0.57 9.1 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain AAA_24 PF13479.1 gi|313127488|ref|YP_004037758.1| - 0.0028 17.2 0.0 2.1 7.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|313127488|ref|YP_004037758.1| - 0.0037 17.2 1.9 0.29 11.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain Miro PF08477.8 gi|313127488|ref|YP_004037758.1| - 0.0067 16.9 0.0 4.1 7.9 0.0 2.7 3 0 0 3 3 2 0 Miro-like protein NTPase_1 PF03266.10 gi|313127488|ref|YP_004037758.1| - 0.0071 16.0 0.3 7.7 6.1 0.0 3.3 4 0 0 4 4 3 0 NTPase Arch_ATPase PF01637.13 gi|313127488|ref|YP_004037758.1| - 0.0075 15.9 0.0 2.3 7.8 0.0 2.3 2 0 0 2 2 2 1 Archaeal ATPase SbcCD_C PF13558.1 gi|313127488|ref|YP_004037758.1| - 0.008 16.0 0.0 2.4 8.1 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_6 PF12837.2 gi|313127488|ref|YP_004037758.1| - 0.0093 15.8 14.5 0.028 14.2 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|313127488|ref|YP_004037758.1| - 0.029 14.7 8.9 0.066 13.6 6.2 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Rad17 PF03215.10 gi|313127488|ref|YP_004037758.1| - 0.036 12.7 0.0 1.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|313127488|ref|YP_004037758.1| - 0.036 13.7 0.0 6.5 6.4 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|313127488|ref|YP_004037758.1| - 0.048 13.0 0.4 2.9 7.2 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RuvB_N PF05496.7 gi|313127488|ref|YP_004037758.1| - 0.058 12.4 0.1 12 4.8 0.0 2.7 3 0 0 3 3 2 0 Holliday junction DNA helicase ruvB N-terminus MukB PF04310.7 gi|313127488|ref|YP_004037758.1| - 0.075 12.3 0.0 6.6 5.9 0.0 2.3 2 0 0 2 2 2 0 MukB N-terminal AAA_10 PF12846.2 gi|313127488|ref|YP_004037758.1| - 0.091 12.1 5.4 1.4 8.2 0.3 3.2 3 2 0 3 3 3 0 AAA-like domain AAA_13 PF13166.1 gi|313127488|ref|YP_004037758.1| - 0.11 10.9 0.0 6.9 5.0 0.0 2.7 2 1 1 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|313127488|ref|YP_004037758.1| - 0.14 12.1 0.1 15 5.5 0.1 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|313127488|ref|YP_004037758.1| - 0.17 10.6 1.7 2.5 6.8 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_2 PF12797.2 gi|313127488|ref|YP_004037758.1| - 0.26 11.3 12.6 0.22 11.4 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313127488|ref|YP_004037758.1| - 0.43 10.8 11.2 0.86 9.9 7.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain IstB_IS21 PF01695.12 gi|313127488|ref|YP_004037758.1| - 0.48 9.8 3.6 3.5 7.0 0.1 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_10 PF13237.1 gi|313127488|ref|YP_004037758.1| - 1 9.2 11.2 1.8 8.4 7.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|313127488|ref|YP_004037758.1| - 1.2 9.9 9.6 0.093 13.4 0.8 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|313127488|ref|YP_004037758.1| - 4.9 7.0 8.7 11 6.0 6.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|313127488|ref|YP_004037758.1| - 8.4 7.2 13.5 0.12 13.0 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1634 PF07843.6 gi|313127489|ref|YP_004037759.1| - 0.0011 18.5 3.9 0.0017 17.9 2.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) EIID-AGA PF03613.9 gi|313127489|ref|YP_004037759.1| - 0.028 13.3 1.3 0.039 12.8 0.9 1.2 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF3487 PF11990.3 gi|313127489|ref|YP_004037759.1| - 3.6 7.0 6.3 0.68 9.3 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) HTH_27 PF13463.1 gi|313127490|ref|YP_004037760.1| - 0.0037 17.5 0.0 0.0047 17.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|313127490|ref|YP_004037760.1| - 0.0065 16.1 0.1 0.0087 15.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|313127490|ref|YP_004037760.1| - 0.012 15.1 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|313127490|ref|YP_004037760.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|313127490|ref|YP_004037760.1| - 0.026 14.2 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|313127490|ref|YP_004037760.1| - 0.046 13.3 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|313127490|ref|YP_004037760.1| - 0.059 12.7 0.0 0.085 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PaaX PF07848.7 gi|313127490|ref|YP_004037760.1| - 0.065 13.2 0.1 0.092 12.7 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein T2SE PF00437.15 gi|313127491|ref|YP_004037761.1| - 1.1e-13 50.7 0.0 4.3e-13 48.7 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|313127491|ref|YP_004037761.1| - 1.9e-08 33.8 0.2 5.6e-08 32.3 0.2 1.9 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|313127491|ref|YP_004037761.1| - 4.1e-05 24.3 0.0 0.00017 22.3 0.0 2.2 1 0 0 1 1 1 1 AAA domain KH_3 PF13014.1 gi|313127491|ref|YP_004037761.1| - 0.00025 20.6 0.2 0.00089 18.8 0.1 2.0 1 0 0 1 1 1 1 KH domain PIN PF01850.16 gi|313127491|ref|YP_004037761.1| - 0.00027 21.2 0.1 0.00092 19.5 0.0 2.0 2 0 0 2 2 1 1 PIN domain AAA_16 PF13191.1 gi|313127491|ref|YP_004037761.1| - 0.00039 20.4 0.0 0.0063 16.5 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain Thymidylate_kin PF02223.12 gi|313127491|ref|YP_004037761.1| - 0.00041 19.7 0.0 0.0013 18.1 0.0 1.7 1 1 1 2 2 2 1 Thymidylate kinase AAA_30 PF13604.1 gi|313127491|ref|YP_004037761.1| - 0.00086 18.9 0.2 0.0023 17.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|313127491|ref|YP_004037761.1| - 0.001 18.2 0.0 0.0021 17.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|313127491|ref|YP_004037761.1| - 0.0014 18.3 0.0 0.0035 17.0 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_33 PF13671.1 gi|313127491|ref|YP_004037761.1| - 0.0018 18.1 0.0 0.0088 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313127491|ref|YP_004037761.1| - 0.0021 17.5 0.0 0.0071 15.8 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain KH_2 PF07650.12 gi|313127491|ref|YP_004037761.1| - 0.0026 17.2 0.5 0.0062 16.0 0.3 1.7 1 0 0 1 1 1 1 KH domain AAA_19 PF13245.1 gi|313127491|ref|YP_004037761.1| - 0.0034 17.1 0.0 0.0082 15.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|313127491|ref|YP_004037761.1| - 0.0041 17.2 0.0 0.012 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|313127491|ref|YP_004037761.1| - 0.005 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313127491|ref|YP_004037761.1| - 0.0052 17.0 0.1 0.03 14.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|313127491|ref|YP_004037761.1| - 0.0056 15.9 0.0 0.013 14.7 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 PIN_4 PF13638.1 gi|313127491|ref|YP_004037761.1| - 0.0092 16.0 0.0 0.03 14.4 0.0 1.9 1 1 0 1 1 1 1 PIN domain AAA_5 PF07728.9 gi|313127491|ref|YP_004037761.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313127491|ref|YP_004037761.1| - 0.018 15.2 0.0 0.046 13.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|313127491|ref|YP_004037761.1| - 0.024 14.1 0.0 0.06 12.8 0.0 1.6 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.12 gi|313127491|ref|YP_004037761.1| - 0.037 13.4 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|313127491|ref|YP_004037761.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|313127491|ref|YP_004037761.1| - 0.081 12.3 0.9 0.19 11.0 0.2 1.9 2 1 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|313127491|ref|YP_004037761.1| - 0.11 12.8 0.0 0.28 11.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Sigma54_activat PF00158.21 gi|313127491|ref|YP_004037761.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|313127491|ref|YP_004037761.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.2 gi|313127491|ref|YP_004037761.1| - 0.13 11.2 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 Sigma54_activ_2 PF14532.1 gi|313127491|ref|YP_004037761.1| - 0.13 12.2 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|313127491|ref|YP_004037761.1| - 0.17 11.0 0.0 0.4 9.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KH_4 PF13083.1 gi|313127491|ref|YP_004037761.1| - 0.23 11.1 1.6 0.63 9.7 0.4 2.3 2 0 0 2 2 2 0 KH domain MCPsignal PF00015.16 gi|313127492|ref|YP_004037762.1| - 3.4e-48 164.0 57.8 7e-47 159.7 23.1 3.2 2 1 1 3 3 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313127492|ref|YP_004037762.1| - 3.7e-14 52.6 0.2 3.7e-14 52.6 0.1 6.1 6 1 2 8 8 5 2 HAMP domain Laminin_II PF06009.7 gi|313127492|ref|YP_004037762.1| - 0.00066 19.4 30.9 0.48 10.1 3.1 4.9 3 2 2 5 5 5 4 Laminin Domain II BLOC1_2 PF10046.4 gi|313127492|ref|YP_004037762.1| - 0.0018 18.3 20.7 0.78 9.9 1.9 4.9 2 2 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.6 gi|313127492|ref|YP_004037762.1| - 0.006 16.4 3.7 0.006 16.4 2.6 6.1 6 2 2 8 8 6 2 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.6 gi|313127492|ref|YP_004037762.1| - 0.0092 16.3 4.1 0.0092 16.3 2.8 4.2 2 2 2 4 4 4 1 Syntaxin 6, N-terminal Spectrin PF00435.16 gi|313127492|ref|YP_004037762.1| - 0.017 15.4 2.9 0.017 15.4 2.0 4.7 2 2 2 5 5 5 0 Spectrin repeat Spc7 PF08317.6 gi|313127492|ref|YP_004037762.1| - 0.023 13.3 14.1 0.34 9.5 0.7 2.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|313127492|ref|YP_004037762.1| - 0.023 14.6 22.9 0.044 13.7 0.5 4.5 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain SnoaL_2 PF12680.2 gi|313127492|ref|YP_004037762.1| - 0.038 14.3 0.5 0.038 14.3 0.3 3.9 3 2 0 4 4 4 0 SnoaL-like domain AAA_13 PF13166.1 gi|313127492|ref|YP_004037762.1| - 0.041 12.3 20.8 0.23 9.9 8.5 2.2 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|313127492|ref|YP_004037762.1| - 0.075 12.8 21.7 0.66 9.7 1.9 4.8 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) ATG16 PF08614.6 gi|313127492|ref|YP_004037762.1| - 0.091 12.5 16.0 0.78 9.5 1.5 2.6 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) V_ATPase_I PF01496.14 gi|313127492|ref|YP_004037762.1| - 0.12 10.2 13.6 0.068 11.0 7.8 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|313127492|ref|YP_004037762.1| - 0.18 11.3 24.1 0.42 10.1 4.1 4.3 2 2 0 2 2 2 0 IncA protein Phage_GP20 PF06810.6 gi|313127492|ref|YP_004037762.1| - 0.31 10.4 12.8 4.4 6.7 0.0 3.7 3 1 1 4 4 3 0 Phage minor structural protein GP20 Ferritin PF00210.19 gi|313127492|ref|YP_004037762.1| - 0.74 9.5 17.9 0.74 9.5 4.9 4.1 2 1 1 3 3 3 0 Ferritin-like domain IFT57 PF10498.4 gi|313127492|ref|YP_004037762.1| - 1.1 7.9 13.8 1.9 7.1 0.6 2.6 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 Peptidase_C6 PF00851.13 gi|313127492|ref|YP_004037762.1| - 1.3 7.5 5.2 2.4 6.6 0.7 2.2 2 0 0 2 2 2 0 Helper component proteinase CobU PF02283.11 gi|313127492|ref|YP_004037762.1| - 1.3 8.3 12.6 2 7.7 2.4 3.3 2 1 1 3 3 3 0 Cobinamide kinase / cobinamide phosphate guanyltransferase BAR_2 PF10455.4 gi|313127492|ref|YP_004037762.1| - 1.4 7.8 11.1 0.3 9.9 1.4 3.2 3 0 0 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking NPV_P10 PF05531.7 gi|313127492|ref|YP_004037762.1| - 1.4 9.1 24.4 8.4 6.7 0.6 5.9 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|313127492|ref|YP_004037762.1| - 2.1 8.1 18.8 1.4 8.7 1.6 4.1 3 3 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Snapin_Pallidin PF14712.1 gi|313127492|ref|YP_004037762.1| - 2.2 8.6 7.7 30 5.0 0.1 4.3 4 1 1 5 5 4 0 Snapin/Pallidin HisKA PF00512.20 gi|313127492|ref|YP_004037762.1| - 2.5 8.1 19.5 1.5 8.8 0.1 5.9 2 2 2 4 4 4 0 His Kinase A (phospho-acceptor) domain APG17 PF04108.7 gi|313127492|ref|YP_004037762.1| - 2.7 6.6 17.3 5.8 5.6 1.7 2.9 1 1 1 2 2 2 0 Autophagy protein Apg17 CorA PF01544.13 gi|313127492|ref|YP_004037762.1| - 2.8 6.8 15.2 3.4 6.6 3.0 3.9 3 2 1 4 4 4 0 CorA-like Mg2+ transporter protein MutS_III PF05192.13 gi|313127492|ref|YP_004037762.1| - 3.5 7.3 10.3 5.5e+02 0.1 7.1 3.2 1 1 0 1 1 1 0 MutS domain III APG6 PF04111.7 gi|313127492|ref|YP_004037762.1| - 3.7 6.4 17.3 3.7 6.5 1.3 2.8 2 1 1 3 3 3 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|313127492|ref|YP_004037762.1| - 5 7.2 10.1 4.1 7.5 1.6 3.6 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Mating_N PF12731.2 gi|313127492|ref|YP_004037762.1| - 6.6 6.6 17.2 0.62 9.9 0.3 4.4 3 2 1 4 4 4 0 Mating-type protein beta 1 Mod_r PF07200.8 gi|313127492|ref|YP_004037762.1| - 7.1 6.5 12.0 6.9 6.5 0.3 3.9 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.4 gi|313127492|ref|YP_004037762.1| - 8.3 5.2 9.0 9.7 5.0 3.2 2.2 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Peptidase_M20 PF01546.23 gi|313127493|ref|YP_004037763.1| - 9.5e-30 103.5 2.6 1.2e-29 103.1 1.8 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|313127493|ref|YP_004037763.1| - 2.6e-13 49.6 0.0 9.2e-13 47.9 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M32 PF02074.10 gi|313127494|ref|YP_004037764.1| - 2.3e-160 534.4 1.5 2.8e-160 534.2 1.1 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DsrC PF04358.8 gi|313127494|ref|YP_004037764.1| - 0.12 12.6 0.0 0.46 10.7 0.0 2.0 2 0 0 2 2 2 0 DsrC like protein zinc_ribbon_2 PF13240.1 gi|313127495|ref|YP_004037765.1| - 0.0075 15.7 1.0 0.015 14.8 0.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|313127495|ref|YP_004037765.1| - 0.013 15.3 0.6 0.017 14.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|313127495|ref|YP_004037765.1| - 0.033 13.8 2.4 0.1 12.3 1.7 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|313127495|ref|YP_004037765.1| - 0.036 13.7 2.0 0.07 12.7 1.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|313127495|ref|YP_004037765.1| - 0.041 13.1 2.5 0.14 11.4 1.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|313127495|ref|YP_004037765.1| - 0.16 11.4 1.2 2.3 7.7 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|313127495|ref|YP_004037765.1| - 0.19 11.2 0.5 0.19 11.2 0.3 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|313127495|ref|YP_004037765.1| - 0.42 10.5 4.4 5.6 6.9 0.7 2.3 2 1 0 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.1 gi|313127495|ref|YP_004037765.1| - 0.45 10.2 3.9 2.4 7.9 2.7 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-tcix PF14952.1 gi|313127495|ref|YP_004037765.1| - 1 8.7 3.3 0.63 9.4 0.6 1.8 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|313127495|ref|YP_004037765.1| - 2.8 7.9 5.0 2.7 8.0 0.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain UvrD-helicase PF00580.16 gi|313127496|ref|YP_004037766.1| - 1.2e-25 90.5 1.2 4.7e-12 45.8 0.0 2.7 3 0 0 3 3 3 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|313127496|ref|YP_004037766.1| - 6.5e-14 52.1 0.1 4.2e-09 36.3 0.0 2.9 1 1 2 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|313127496|ref|YP_004037766.1| - 5.6e-11 42.0 0.1 1.6e-10 40.5 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|313127496|ref|YP_004037766.1| - 3.7e-07 30.2 1.1 7.3e-06 26.0 0.3 2.9 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|313127496|ref|YP_004037766.1| - 1.9e-05 24.3 0.0 1.7 8.1 0.1 3.8 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|313127496|ref|YP_004037766.1| - 0.00036 20.1 0.1 0.0025 17.4 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_12 PF13087.1 gi|313127496|ref|YP_004037766.1| - 0.00087 18.7 0.0 0.0055 16.1 0.0 2.3 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|313127496|ref|YP_004037766.1| - 0.00088 19.4 0.0 0.18 11.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain Herpes_ori_bp PF02399.10 gi|313127496|ref|YP_004037766.1| - 0.0012 16.9 0.0 0.0018 16.3 0.0 1.1 1 0 0 1 1 1 1 Origin of replication binding protein AAA_30 PF13604.1 gi|313127496|ref|YP_004037766.1| - 0.01 15.4 0.1 0.069 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313127496|ref|YP_004037766.1| - 0.035 13.5 0.0 0.45 9.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|313127496|ref|YP_004037766.1| - 0.054 12.4 0.0 2.7 6.8 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Peptidase_M24 PF00557.19 gi|313127497|ref|YP_004037767.1| - 2.3e-40 138.4 0.3 3.1e-40 137.9 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF3017 PF11222.3 gi|313127498|ref|YP_004037768.1| - 0.011 15.4 1.3 0.016 14.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3017) CitMHS PF03600.11 gi|313127499|ref|YP_004037769.1| - 3.5e-48 163.9 0.0 6.2e-36 123.6 0.0 1.7 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|313127499|ref|YP_004037769.1| - 2.1e-23 82.9 39.1 1.6e-14 53.6 12.7 2.6 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|313127499|ref|YP_004037769.1| - 8.6e-20 70.1 2.8 4.8e-11 42.0 0.3 2.6 2 0 0 2 2 2 2 TrkA-C domain DUF502 PF04367.8 gi|313127500|ref|YP_004037770.1| - 7.6e-27 93.2 0.0 1.4e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Lum_binding PF00677.12 gi|313127501|ref|YP_004037771.1| - 8.7e-34 115.2 0.0 3.5e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|313127502|ref|YP_004037772.1| - 1.4e-40 138.5 13.4 1.4e-40 138.5 9.3 1.8 2 0 0 2 2 2 1 Protease prsW family DUF4051 PF13260.1 gi|313127502|ref|YP_004037772.1| - 0.1 11.9 1.2 0.34 10.2 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) DUF402 PF04167.8 gi|313127504|ref|YP_004037774.1| - 4e-22 77.8 0.2 7.5e-22 76.9 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|313127504|ref|YP_004037774.1| - 8.4e-05 22.5 0.0 0.0002 21.3 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain MoeA_C PF03454.10 gi|313127504|ref|YP_004037774.1| - 0.0032 17.3 0.0 0.022 14.7 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) NifU PF01106.12 gi|313127505|ref|YP_004037775.1| - 3.9e-09 36.1 0.3 5.9e-09 35.5 0.2 1.3 1 0 0 1 1 1 1 NifU-like domain LVIVD PF08309.6 gi|313127506|ref|YP_004037776.1| - 4.9e-14 51.0 8.8 2.2e-07 29.7 0.0 6.5 8 0 0 8 8 8 3 LVIVD repeat Beta_propel PF09826.4 gi|313127506|ref|YP_004037776.1| - 0.016 13.6 0.0 3.9 5.6 0.0 3.9 5 0 0 5 5 5 0 Beta propeller domain SBP56 PF05694.6 gi|313127506|ref|YP_004037776.1| - 0.042 12.3 0.2 0.89 7.9 0.0 2.4 2 0 0 2 2 2 0 56kDa selenium binding protein (SBP56) TAT_signal PF10518.4 gi|313127506|ref|YP_004037776.1| - 0.047 13.7 1.0 0.047 13.7 0.7 2.9 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence ROK PF00480.15 gi|313127507|ref|YP_004037777.1| - 2.2e-31 109.0 0.1 3e-31 108.6 0.1 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|313127507|ref|YP_004037777.1| - 6.2e-07 28.9 0.1 3.2e-06 26.6 0.0 1.9 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|313127507|ref|YP_004037777.1| - 8.9e-06 25.1 0.2 4.8e-05 22.7 0.2 1.9 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Usp PF00582.21 gi|313127508|ref|YP_004037778.1| - 1.1e-19 70.9 0.9 1.5e-19 70.5 0.6 1.2 1 0 0 1 1 1 1 Universal stress protein family adh_short PF00106.20 gi|313127509|ref|YP_004037779.1| - 3.3e-25 88.9 2.6 4.9e-25 88.3 1.8 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313127509|ref|YP_004037779.1| - 1.9e-20 73.6 0.0 5.3e-19 68.9 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313127509|ref|YP_004037779.1| - 5.1e-09 36.0 0.9 7.9e-09 35.4 0.7 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313127509|ref|YP_004037779.1| - 0.0021 17.5 1.3 0.0055 16.1 0.1 2.0 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313127509|ref|YP_004037779.1| - 0.0094 15.9 4.5 0.032 14.2 3.1 2.0 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|313127509|ref|YP_004037779.1| - 0.086 12.6 0.4 0.17 11.6 0.3 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|313127509|ref|YP_004037779.1| - 0.15 11.2 0.6 0.24 10.6 0.4 1.3 1 0 0 1 1 1 0 NmrA-like family Zn-ribbon_8 PF09723.5 gi|313127511|ref|YP_004037781.1| - 0.049 13.5 3.1 0.13 12.2 0.4 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF1660 PF07874.6 gi|313127511|ref|YP_004037781.1| - 0.071 13.3 0.3 0.071 13.3 0.2 2.4 2 1 0 2 2 2 0 Prophage protein (DUF1660) DZR PF12773.2 gi|313127511|ref|YP_004037781.1| - 0.28 11.0 4.2 0.69 9.7 1.3 2.4 2 1 0 2 2 2 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|313127511|ref|YP_004037781.1| - 0.37 10.8 5.5 2.1 8.4 1.4 3.2 2 1 1 3 3 3 0 zinc-finger zf-TFIIB PF13453.1 gi|313127511|ref|YP_004037781.1| - 0.82 8.9 6.9 1.3 8.2 1.8 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|313127511|ref|YP_004037781.1| - 0.92 9.2 3.1 13 5.5 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF2296 PF10058.4 gi|313127511|ref|YP_004037781.1| - 0.96 9.2 3.0 3 7.6 0.0 3.0 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|313127511|ref|YP_004037781.1| - 1.5 8.3 6.6 14 5.2 4.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|313127511|ref|YP_004037781.1| - 2.7 8.0 5.1 25 5.0 0.2 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 MGC-24 PF05283.6 gi|313127511|ref|YP_004037781.1| - 6 6.6 9.8 1.2 8.9 4.2 1.7 1 1 1 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24) DUF1502 PF07397.6 gi|313127511|ref|YP_004037781.1| - 8.6 6.0 14.5 7.9 6.2 2.8 2.9 1 1 1 2 2 2 0 Repeat of unknown function (DUF1502) GntR PF00392.16 gi|313127512|ref|YP_004037782.1| - 0.00016 21.0 0.0 0.00022 20.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|313127512|ref|YP_004037782.1| - 0.00021 20.9 0.0 0.00027 20.5 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313127512|ref|YP_004037782.1| - 0.0018 18.0 0.1 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|313127512|ref|YP_004037782.1| - 0.0019 18.6 0.0 0.0024 18.2 0.0 1.1 1 0 0 1 1 1 1 Replication protein A C terminal MarR_2 PF12802.2 gi|313127512|ref|YP_004037782.1| - 0.0048 16.5 0.1 0.0072 15.9 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|313127512|ref|YP_004037782.1| - 0.086 13.1 0.1 0.12 12.6 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain GCV_T PF01571.16 gi|313127513|ref|YP_004037783.1| - 1.8e-39 135.2 0.0 2.8e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|313127513|ref|YP_004037783.1| - 9.9e-18 63.9 0.1 3e-17 62.4 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain FAD_binding_3 PF01494.14 gi|313127514|ref|YP_004037784.1| - 3.1e-16 59.3 1.8 4.2e-11 42.5 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|313127514|ref|YP_004037784.1| - 2.6e-11 43.0 1.5 4.3e-05 22.5 0.2 2.2 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313127514|ref|YP_004037784.1| - 9.5e-08 32.1 0.1 3.5e-07 30.2 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313127514|ref|YP_004037784.1| - 1.2e-06 27.8 0.4 1.7e-06 27.3 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313127514|ref|YP_004037784.1| - 3.2e-06 27.3 0.0 5.4e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|313127514|ref|YP_004037784.1| - 7.2e-06 25.1 2.9 0.16 10.8 0.0 2.9 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|313127514|ref|YP_004037784.1| - 0.00054 18.9 4.3 0.0041 16.0 0.4 2.3 1 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|313127514|ref|YP_004037784.1| - 0.00087 17.8 0.2 0.015 13.7 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|313127514|ref|YP_004037784.1| - 0.0032 17.4 0.6 0.018 15.0 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain SE PF08491.5 gi|313127514|ref|YP_004037784.1| - 0.027 13.3 0.0 0.19 10.5 0.0 1.9 2 0 0 2 2 2 0 Squalene epoxidase NAD_binding_2 PF03446.10 gi|313127514|ref|YP_004037784.1| - 0.04 13.7 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_9 PF13454.1 gi|313127514|ref|YP_004037784.1| - 0.059 13.1 0.7 0.39 10.4 0.5 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|313127514|ref|YP_004037784.1| - 0.073 11.6 0.5 0.28 9.7 0.1 1.9 3 0 0 3 3 3 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|313127514|ref|YP_004037784.1| - 0.12 12.0 0.0 0.35 10.5 0.0 1.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PSII_BNR PF14870.1 gi|313127516|ref|YP_004037786.1| - 1.3e-07 30.9 5.3 0.0013 17.7 0.1 3.5 1 1 0 2 2 2 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.15 gi|313127516|ref|YP_004037786.1| - 1.3e-06 27.3 24.5 0.11 12.4 0.1 6.0 6 0 0 6 6 6 4 BNR/Asp-box repeat BNR_2 PF13088.1 gi|313127516|ref|YP_004037786.1| - 5.2e-05 22.6 6.8 0.069 12.4 0.1 3.3 1 1 1 2 2 2 2 BNR repeat-like domain DUF4185 PF13810.1 gi|313127516|ref|YP_004037786.1| - 0.015 14.1 7.0 1.2 7.9 0.0 3.7 1 1 3 4 4 4 0 Domain of unknown function (DUF4185) Glyoxalase_4 PF13669.1 gi|313127516|ref|YP_004037786.1| - 0.061 13.3 0.4 0.84 9.6 0.1 2.5 1 1 1 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Transgly_assoc PF04226.8 gi|313127517|ref|YP_004037787.1| - 9 6.4 10.6 2.1e+03 -1.1 7.7 2.2 1 1 0 1 1 1 0 Transglycosylase associated protein ABC_tran PF00005.22 gi|313127518|ref|YP_004037788.1| - 2.6e-22 79.5 0.0 4.8e-12 46.3 0.0 4.3 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|313127518|ref|YP_004037788.1| - 5.6e-13 48.6 0.1 0.005 16.0 0.1 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313127518|ref|YP_004037788.1| - 9.3e-09 34.6 0.1 0.001 18.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|313127518|ref|YP_004037788.1| - 4.6e-07 30.0 5.4 0.24 11.3 0.0 4.2 4 0 0 4 4 4 3 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|313127518|ref|YP_004037788.1| - 6.3e-07 29.3 3.8 0.0032 17.4 0.7 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_25 PF13481.1 gi|313127518|ref|YP_004037788.1| - 2.5e-06 27.0 0.0 0.17 11.2 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|313127518|ref|YP_004037788.1| - 2.7e-06 27.5 0.5 0.086 12.9 0.0 3.7 4 0 0 4 4 3 2 AAA domain DUF258 PF03193.11 gi|313127518|ref|YP_004037788.1| - 5.3e-06 25.6 0.0 0.022 13.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313127518|ref|YP_004037788.1| - 7.6e-06 26.0 0.1 0.059 13.3 0.0 3.3 3 0 0 3 3 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|313127518|ref|YP_004037788.1| - 4.5e-05 23.8 0.4 0.042 14.1 0.0 2.9 3 1 0 3 3 2 1 AAA domain AAA_18 PF13238.1 gi|313127518|ref|YP_004037788.1| - 7.1e-05 23.1 0.3 0.47 10.7 0.0 3.9 4 0 0 4 4 3 1 AAA domain AAA_14 PF13173.1 gi|313127518|ref|YP_004037788.1| - 8.9e-05 22.3 0.0 0.25 11.2 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|313127518|ref|YP_004037788.1| - 0.0001 21.8 5.9 0.014 14.8 0.0 3.5 4 1 0 4 4 3 2 AAA-like domain KaiC PF06745.8 gi|313127518|ref|YP_004037788.1| - 0.00013 21.1 0.0 0.054 12.6 0.0 2.6 2 0 0 2 2 2 1 KaiC AAA_33 PF13671.1 gi|313127518|ref|YP_004037788.1| - 0.00045 20.1 0.4 0.9 9.4 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA_15 PF13175.1 gi|313127518|ref|YP_004037788.1| - 0.00046 19.3 0.0 0.39 9.7 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain APS_kinase PF01583.15 gi|313127518|ref|YP_004037788.1| - 0.0018 17.9 1.0 3.4 7.3 0.0 3.5 3 0 0 3 3 3 1 Adenylylsulphate kinase DUF2075 PF09848.4 gi|313127518|ref|YP_004037788.1| - 0.0051 15.8 0.1 1.4 7.8 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|313127518|ref|YP_004037788.1| - 0.0057 16.1 0.1 0.62 9.4 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|313127518|ref|YP_004037788.1| - 0.007 16.0 0.0 0.28 10.8 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Viral_helicase1 PF01443.13 gi|313127518|ref|YP_004037788.1| - 0.0085 15.6 0.1 0.37 10.2 0.0 2.6 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase Arch_ATPase PF01637.13 gi|313127518|ref|YP_004037788.1| - 0.0099 15.5 0.0 6.2 6.4 0.0 2.6 2 0 0 2 2 2 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|313127518|ref|YP_004037788.1| - 0.012 15.0 0.1 2.4 7.5 0.0 3.3 3 0 0 3 3 3 0 FtsK/SpoIIIE family MobB PF03205.9 gi|313127518|ref|YP_004037788.1| - 0.014 15.1 0.1 0.9 9.2 0.0 3.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|313127518|ref|YP_004037788.1| - 0.015 15.2 0.3 1.6 8.6 0.0 3.6 4 0 0 4 4 4 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|313127518|ref|YP_004037788.1| - 0.029 14.5 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_19 PF13245.1 gi|313127518|ref|YP_004037788.1| - 0.068 12.9 0.1 13 5.5 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|313127518|ref|YP_004037788.1| - 0.077 13.8 14.9 0.21 12.4 0.0 4.8 6 1 1 7 7 5 0 AAA domain Miro PF08477.8 gi|313127518|ref|YP_004037788.1| - 0.15 12.5 0.0 24 5.4 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein NB-ARC PF00931.17 gi|313127518|ref|YP_004037788.1| - 0.22 10.3 0.0 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Zn-ribbon_8 PF09723.5 gi|313127518|ref|YP_004037788.1| - 0.41 10.6 6.6 18 5.3 0.1 3.5 3 0 0 3 3 3 0 Zinc ribbon domain DUF87 PF01935.12 gi|313127518|ref|YP_004037788.1| - 2.5 7.8 5.7 0.59 9.9 0.0 2.8 3 1 0 3 3 2 0 Domain of unknown function DUF87 DUF552 PF04472.7 gi|313127519|ref|YP_004037789.1| - 1.5e-17 63.2 2.4 1.9e-17 62.9 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF2088 PF09861.4 gi|313127519|ref|YP_004037789.1| - 0.056 12.4 0.1 0.072 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) SnoaL_2 PF12680.2 gi|313127519|ref|YP_004037789.1| - 0.12 12.7 0.2 0.16 12.3 0.1 1.2 1 0 0 1 1 1 0 SnoaL-like domain bcl-2I13 PF12201.3 gi|313127519|ref|YP_004037789.1| - 0.14 11.6 0.2 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing DUF1028 PF06267.7 gi|313127520|ref|YP_004037790.1| - 3.4e-50 170.1 0.1 4.1e-50 169.8 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PUA PF01472.15 gi|313127521|ref|YP_004037791.1| - 1.2e-16 60.2 1.4 1.2e-16 60.2 1.0 1.8 2 1 0 2 2 2 1 PUA domain UPF0278 PF08745.6 gi|313127521|ref|YP_004037791.1| - 0.04 13.1 0.1 0.059 12.6 0.1 1.3 1 0 0 1 1 1 0 UPF0278 family Baculo_ME53 PF06061.6 gi|313127522|ref|YP_004037792.1| - 0.082 11.8 1.6 0.12 11.3 1.1 1.4 1 1 0 1 1 1 0 Baculoviridae ME53 DUF3417 PF11897.3 gi|313127522|ref|YP_004037792.1| - 0.088 12.7 0.2 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) GFA PF04828.9 gi|313127522|ref|YP_004037792.1| - 0.09 12.7 1.0 1.8 8.5 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme GATA PF00320.22 gi|313127522|ref|YP_004037792.1| - 0.14 11.5 5.8 0.3 10.4 0.2 2.3 2 0 0 2 2 2 0 GATA zinc finger DZR PF12773.2 gi|313127522|ref|YP_004037792.1| - 0.25 11.1 2.2 1.2 9.0 1.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-UBR PF02207.15 gi|313127522|ref|YP_004037792.1| - 2.4 7.9 5.6 26 4.6 3.9 2.1 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) RNB PF00773.14 gi|313127523|ref|YP_004037793.1| - 1.3e-78 264.6 0.1 1.7e-50 172.1 0.1 2.1 1 1 1 2 2 2 2 RNB domain DUF982 PF06169.7 gi|313127523|ref|YP_004037793.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF982) Prok-RING_1 PF14446.1 gi|313127524|ref|YP_004037794.1| - 0.0051 16.5 0.8 0.009 15.7 0.5 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 CBS PF00571.23 gi|313127525|ref|YP_004037795.1| - 2e-32 110.7 5.9 9.2e-17 60.5 0.3 2.0 2 0 0 2 2 2 2 CBS domain MRP-S22 PF10245.4 gi|313127525|ref|YP_004037795.1| - 0.1 11.9 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 PPC PF04151.10 gi|313127526|ref|YP_004037796.1| - 2e-08 35.0 3.3 2.8e-05 25.0 0.1 5.1 3 1 0 3 3 3 2 Bacterial pre-peptidase C-terminal domain PA-IIL PF07472.6 gi|313127526|ref|YP_004037796.1| - 0.85 9.8 4.6 36 4.6 0.0 3.9 4 0 0 4 4 4 0 Fucose-binding lectin II (PA-IIL) Ribosomal_S10 PF00338.17 gi|313127528|ref|YP_004037798.1| - 1.1e-28 98.8 0.0 1.3e-28 98.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|313127529|ref|YP_004037799.1| - 4.9e-58 195.6 0.1 7e-58 195.1 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|313127529|ref|YP_004037799.1| - 3.9e-30 103.9 0.1 1.3e-29 102.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|313127529|ref|YP_004037799.1| - 1e-18 67.2 3.2 6.1e-18 64.6 0.9 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|313127529|ref|YP_004037799.1| - 1.6e-07 31.2 0.0 3.7e-07 30.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|313127529|ref|YP_004037799.1| - 9.2e-06 25.2 0.1 3.2e-05 23.4 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|313127529|ref|YP_004037799.1| - 5e-05 22.5 0.1 0.025 13.6 0.0 2.3 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region Miro PF08477.8 gi|313127529|ref|YP_004037799.1| - 6.8e-05 23.3 0.0 0.0021 18.5 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein SRPRB PF09439.5 gi|313127529|ref|YP_004037799.1| - 0.011 14.9 0.0 0.36 10.0 0.0 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|313127529|ref|YP_004037799.1| - 0.019 14.0 0.0 0.04 12.9 0.0 1.5 1 0 0 1 1 1 0 Septin Dynamin_N PF00350.18 gi|313127529|ref|YP_004037799.1| - 0.057 13.2 0.1 6.4 6.5 0.0 2.5 1 1 1 2 2 2 0 Dynamin family FeoB_N PF02421.13 gi|313127529|ref|YP_004037799.1| - 0.095 11.9 0.1 2.1 7.6 0.1 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Homoserine_dh PF00742.14 gi|313127530|ref|YP_004037800.1| - 6.2e-49 166.0 0.1 8.8e-49 165.5 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|313127530|ref|YP_004037800.1| - 7.4e-09 36.0 0.2 1.4e-08 35.1 0.2 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|313127530|ref|YP_004037800.1| - 4.7e-08 32.9 0.1 1e-07 31.8 0.1 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.1 gi|313127530|ref|YP_004037800.1| - 0.0011 18.9 2.0 0.0044 17.0 1.4 2.0 1 1 1 2 2 2 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|313127530|ref|YP_004037800.1| - 0.0076 15.4 0.1 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|313127530|ref|YP_004037800.1| - 0.023 14.1 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|313127530|ref|YP_004037800.1| - 0.027 14.1 0.1 0.049 13.2 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_23 PF13489.1 gi|313127530|ref|YP_004037800.1| - 0.13 12.0 0.0 0.6 9.8 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain ACT PF01842.20 gi|313127531|ref|YP_004037801.1| - 6e-06 25.6 0.2 6.2e-05 22.3 0.0 2.5 1 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|313127531|ref|YP_004037801.1| - 0.063 13.6 0.0 0.83 10.0 0.0 2.3 2 1 0 2 2 2 0 ACT domain GTP_EFTU PF00009.22 gi|313127532|ref|YP_004037802.1| - 2.2e-61 206.5 0.5 3.6e-61 205.8 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.19 gi|313127532|ref|YP_004037802.1| - 6.9e-24 83.5 0.0 1.3e-22 79.4 0.0 2.7 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|313127532|ref|YP_004037802.1| - 9.9e-23 79.7 0.5 9.9e-23 79.7 0.4 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_IV PF03764.13 gi|313127532|ref|YP_004037802.1| - 1.2e-22 79.6 0.0 4.4e-22 77.8 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV GTP_EFTU_D2 PF03144.20 gi|313127532|ref|YP_004037802.1| - 4.2e-15 55.6 2.9 9.1e-15 54.5 1.1 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|313127532|ref|YP_004037802.1| - 1.9e-05 24.5 0.2 8.2e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|313127532|ref|YP_004037802.1| - 0.05 12.8 0.1 0.14 11.3 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|313127532|ref|YP_004037802.1| - 0.14 11.5 0.0 0.33 10.3 0.0 1.6 1 0 0 1 1 1 0 Ras family DUF4157 PF13699.1 gi|313127533|ref|YP_004037803.1| - 0.026 14.6 0.8 0.063 13.4 0.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Ribosomal_S7 PF00177.16 gi|313127534|ref|YP_004037804.1| - 1.3e-36 125.3 2.9 1.6e-36 125.1 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2420 PF10336.4 gi|313127534|ref|YP_004037804.1| - 0.037 13.6 0.1 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) Ribosom_S12_S23 PF00164.20 gi|313127535|ref|YP_004037805.1| - 1.3e-41 140.8 0.3 1.5e-41 140.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MS_channel PF00924.13 gi|313127536|ref|YP_004037806.1| - 6.2e-33 113.8 0.0 6.2e-33 113.8 0.0 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel CopD PF05425.8 gi|313127536|ref|YP_004037806.1| - 1.1 9.5 7.8 0.29 11.3 1.9 2.2 1 1 1 2 2 2 0 Copper resistance protein D Usp PF00582.21 gi|313127537|ref|YP_004037807.1| - 3.4e-15 56.4 0.1 4e-15 56.2 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family KH_2 PF07650.12 gi|313127538|ref|YP_004037808.1| - 8.5e-17 60.4 0.2 4.4e-08 32.5 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|313127538|ref|YP_004037808.1| - 5.8e-11 42.0 0.2 3.4e-10 39.5 0.0 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|313127538|ref|YP_004037808.1| - 9.3e-09 34.8 0.0 9.9e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|313127538|ref|YP_004037808.1| - 4.1e-06 26.3 0.4 0.0086 15.7 0.0 2.3 1 1 1 2 2 2 2 KH domain gpW PF02831.10 gi|313127538|ref|YP_004037808.1| - 0.14 11.7 0.3 0.32 10.5 0.1 1.7 2 0 0 2 2 2 0 gpW RNA_pol_Rpb1_5 PF04998.12 gi|313127539|ref|YP_004037809.1| - 1.8e-48 165.1 0.2 2.3e-48 164.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF4355 PF14265.1 gi|313127539|ref|YP_004037809.1| - 0.0044 16.9 0.7 0.11 12.3 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|313127540|ref|YP_004037810.1| - 1.3e-87 294.2 0.0 2.5e-87 293.3 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|313127540|ref|YP_004037810.1| - 7.3e-66 221.2 0.1 1.2e-65 220.5 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|313127540|ref|YP_004037810.1| - 5.6e-32 109.7 0.0 1.2e-31 108.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|313127540|ref|YP_004037810.1| - 8.5e-30 103.5 0.0 1.5e-29 102.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|313127540|ref|YP_004037810.1| - 9.1e-30 103.8 0.1 1.7e-29 102.9 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.17 gi|313127540|ref|YP_004037810.1| - 0.00032 20.4 0.0 0.00084 19.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix zf-ribbon_3 PF13248.1 gi|313127540|ref|YP_004037810.1| - 9.8 5.5 8.1 0.53 9.5 1.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.23 gi|313127541|ref|YP_004037811.1| - 4.6e-122 407.4 0.0 6.2e-122 407.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_4 PF04566.8 gi|313127541|ref|YP_004037811.1| - 3.2e-27 94.1 1.2 2.2e-26 91.4 0.6 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_7 PF04560.15 gi|313127541|ref|YP_004037811.1| - 7.1e-26 90.2 0.0 1.3e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.12 gi|313127541|ref|YP_004037811.1| - 5.4e-12 45.4 3.7 1.1e-11 44.5 2.6 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 ActA PF05058.7 gi|313127541|ref|YP_004037811.1| - 0.13 10.2 0.1 0.19 9.6 0.1 1.1 1 0 0 1 1 1 0 ActA Protein RNA_pol_Rpb2_1 PF04563.10 gi|313127542|ref|YP_004037812.1| - 8.9e-55 184.7 0.0 1.1e-54 184.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|313127542|ref|YP_004037812.1| - 2.6e-26 92.2 0.1 4e-26 91.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|313127542|ref|YP_004037812.1| - 4.7e-23 80.7 0.0 8.6e-23 79.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|313127543|ref|YP_004037813.1| - 5.3e-28 96.4 0.9 5.8e-28 96.2 0.6 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|313127543|ref|YP_004037813.1| - 0.0099 15.6 0.7 1.7 8.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3006) CRCB PF02537.10 gi|313127544|ref|YP_004037814.1| - 5.4e-22 77.8 10.2 6.7e-22 77.5 7.0 1.1 1 0 0 1 1 1 1 CrcB-like protein YwiC PF14256.1 gi|313127544|ref|YP_004037814.1| - 0.1 12.6 2.9 0.073 13.1 0.9 1.5 1 1 0 1 1 1 0 YwiC-like protein Nucleoside_tran PF01733.13 gi|313127544|ref|YP_004037814.1| - 0.25 10.4 2.1 0.3 10.1 1.5 1.1 1 0 0 1 1 1 0 Nucleoside transporter CRCB PF02537.10 gi|313127545|ref|YP_004037815.1| - 1e-20 73.7 14.1 1.2e-20 73.5 9.7 1.0 1 0 0 1 1 1 1 CrcB-like protein SpecificRecomb PF10136.4 gi|313127545|ref|YP_004037815.1| - 0.047 11.7 8.1 0.081 10.9 1.4 2.0 1 1 1 2 2 2 0 Site-specific recombinase Oxidored_q2 PF00420.19 gi|313127545|ref|YP_004037815.1| - 0.047 13.2 1.8 0.07 12.7 1.3 1.3 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAA_10 PF12846.2 gi|313127546|ref|YP_004037816.1| - 3.5e-13 49.6 0.0 2.9e-08 33.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|313127546|ref|YP_004037816.1| - 1.9e-09 36.4 0.1 4.1e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|313127546|ref|YP_004037816.1| - 2.7e-05 24.1 0.0 4.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|313127546|ref|YP_004037816.1| - 3.6e-05 23.3 0.1 0.0036 16.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|313127546|ref|YP_004037816.1| - 0.0022 16.7 0.0 0.91 8.0 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|313127546|ref|YP_004037816.1| - 0.066 13.2 0.7 0.59 10.0 0.0 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|313127546|ref|YP_004037816.1| - 0.078 13.1 0.0 12 6.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Big_1 PF02369.11 gi|313127547|ref|YP_004037817.1| - 3.3e-05 23.7 0.3 4.3e-05 23.3 0.2 1.3 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|313127547|ref|YP_004037817.1| - 0.00041 20.3 2.4 0.00088 19.2 1.6 1.6 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain YtkA PF13115.1 gi|313127547|ref|YP_004037817.1| - 0.027 14.8 1.4 0.15 12.4 0.9 2.0 1 1 0 1 1 1 0 YtkA-like PASTA PF03793.14 gi|313127547|ref|YP_004037817.1| - 0.034 13.7 0.2 0.074 12.7 0.1 1.7 1 0 0 1 1 1 0 PASTA domain DUF4480 PF13715.1 gi|313127547|ref|YP_004037817.1| - 0.034 14.1 0.5 0.052 13.5 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4480) Rib PF08428.5 gi|313127547|ref|YP_004037817.1| - 0.047 13.4 2.1 0.089 12.5 1.0 1.8 1 1 0 1 1 1 0 Rib/alpha-like repeat DUF2964 PF11177.3 gi|313127547|ref|YP_004037817.1| - 0.085 12.7 1.4 0.17 11.8 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) DUF1743 PF08489.6 gi|313127548|ref|YP_004037818.1| - 2e-33 114.6 0.0 4.3e-33 113.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.2 gi|313127548|ref|YP_004037818.1| - 0.065 13.0 0.8 0.16 11.7 0.6 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|313127548|ref|YP_004037818.1| - 0.13 12.0 1.1 0.29 10.9 0.8 1.6 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|313127548|ref|YP_004037818.1| - 0.13 11.9 0.4 0.36 10.5 0.3 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|313127548|ref|YP_004037818.1| - 0.18 11.5 0.2 0.34 10.6 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1 PF03811.8 gi|313127548|ref|YP_004037818.1| - 0.22 11.0 3.2 0.51 9.8 2.2 1.6 1 0 0 1 1 1 0 InsA N-terminal domain HTH_3 PF01381.17 gi|313127549|ref|YP_004037819.1| - 6.9e-09 35.4 0.0 1.2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|313127549|ref|YP_004037819.1| - 9.9e-07 28.7 0.0 1.9e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313127549|ref|YP_004037819.1| - 1.1e-06 28.7 0.5 3e-06 27.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|313127549|ref|YP_004037819.1| - 0.00023 20.6 0.5 0.00046 19.7 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.7 gi|313127549|ref|YP_004037819.1| - 0.00038 20.0 0.0 0.001 18.6 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|313127549|ref|YP_004037819.1| - 0.00048 19.7 0.1 0.001 18.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|313127549|ref|YP_004037819.1| - 0.01 15.7 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|313127549|ref|YP_004037819.1| - 0.076 12.5 0.0 0.22 11.0 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.11 gi|313127549|ref|YP_004037819.1| - 0.083 12.2 0.1 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|313127549|ref|YP_004037819.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Glutaredoxin PF00462.19 gi|313127550|ref|YP_004037820.1| - 6.9e-13 48.3 0.1 1.3e-12 47.4 0.0 1.5 1 1 1 2 2 2 1 Glutaredoxin GST_N_3 PF13417.1 gi|313127550|ref|YP_004037820.1| - 1.9e-12 47.2 0.0 2.1e-12 47.0 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|313127550|ref|YP_004037820.1| - 8.2e-10 38.5 0.0 9.5e-10 38.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|313127550|ref|YP_004037820.1| - 0.0021 18.2 0.2 0.0023 18.1 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|313127550|ref|YP_004037820.1| - 0.028 14.2 0.3 0.052 13.3 0.2 1.4 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|313127550|ref|YP_004037820.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain Arylsulfotrans PF05935.6 gi|313127551|ref|YP_004037821.1| - 5.6e-13 48.2 4.6 1.8e-11 43.2 2.2 2.2 2 0 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|313127551|ref|YP_004037821.1| - 7.2e-06 25.3 4.8 9.9e-05 21.6 2.5 2.5 1 1 1 2 2 2 1 Arylsulfotransferase (ASST) PQQ PF01011.16 gi|313127551|ref|YP_004037821.1| - 0.0019 17.6 4.2 1.4 8.5 0.2 4.1 4 0 0 4 4 4 2 PQQ enzyme repeat NHL PF01436.16 gi|313127551|ref|YP_004037821.1| - 0.041 13.8 3.2 1.3 9.1 0.0 4.2 5 0 0 5 5 5 0 NHL repeat Xan_ur_permease PF00860.15 gi|313127552|ref|YP_004037822.1| - 5.7e-36 123.8 45.5 1.4e-35 122.5 31.5 1.6 1 1 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|313127553|ref|YP_004037823.1| - 1.4e-10 41.0 0.1 2e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|313127553|ref|YP_004037823.1| - 0.0046 16.7 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix MOFRL PF05161.8 gi|313127553|ref|YP_004037823.1| - 0.0063 16.6 0.2 0.047 13.8 0.1 2.2 2 0 0 2 2 2 1 MOFRL family HTH_31 PF13560.1 gi|313127553|ref|YP_004037823.1| - 0.045 13.9 0.5 0.088 13.0 0.4 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Pribosyltran PF00156.22 gi|313127554|ref|YP_004037824.1| - 3.2e-12 46.2 3.8 1.1e-11 44.4 2.6 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|313127554|ref|YP_004037824.1| - 0.00034 19.8 0.1 0.00043 19.5 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|313127554|ref|YP_004037824.1| - 0.0053 16.0 1.2 0.0068 15.7 0.2 1.6 1 1 1 2 2 2 1 Phosphoribosyl transferase DUF46 PF01864.12 gi|313127555|ref|YP_004037825.1| - 6.3e-45 153.1 3.5 7.4e-45 152.9 2.4 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|313127555|ref|YP_004037825.1| - 7.9e-05 22.4 4.8 7.9e-05 22.4 3.3 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family CcmD PF04995.9 gi|313127555|ref|YP_004037825.1| - 0.0019 17.8 1.3 0.0065 16.1 0.0 2.4 2 0 0 2 2 2 1 Heme exporter protein D (CcmD) DUF2273 PF10031.4 gi|313127555|ref|YP_004037825.1| - 0.17 11.5 0.1 0.17 11.5 0.1 2.6 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) Pro_dh PF01619.13 gi|313127556|ref|YP_004037826.1| - 8.2e-41 139.9 0.3 2e-40 138.7 0.2 1.5 1 1 0 1 1 1 1 Proline dehydrogenase DUF234 PF03008.9 gi|313127556|ref|YP_004037826.1| - 0.21 11.7 0.2 0.21 11.7 0.1 2.0 3 0 0 3 3 3 0 Archaea bacterial proteins of unknown function DUF502 PF04367.8 gi|313127557|ref|YP_004037827.1| - 6.3e-19 67.7 0.1 6.3e-19 67.7 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) DUF485 PF04341.7 gi|313127557|ref|YP_004037827.1| - 0.0056 16.3 2.9 0.0085 15.7 2.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF485 Colicin_V PF02674.11 gi|313127557|ref|YP_004037827.1| - 0.024 14.5 4.5 0.034 13.9 3.1 1.2 1 0 0 1 1 1 0 Colicin V production protein Ribonuc_L-PSP PF01042.16 gi|313127558|ref|YP_004037828.1| - 2.7e-09 36.8 0.4 4.9e-09 35.9 0.3 1.4 1 1 0 1 1 1 1 Endoribonuclease L-PSP Aminotran_4 PF01063.14 gi|313127559|ref|YP_004037829.1| - 7.3e-46 156.4 0.0 8.6e-46 156.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV Epimerase PF01370.16 gi|313127560|ref|YP_004037830.1| - 2.5e-21 76.1 0.0 3.9e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313127560|ref|YP_004037830.1| - 8.4e-11 42.2 2.3 9.9e-11 41.9 1.4 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|313127560|ref|YP_004037830.1| - 3.6e-07 29.3 0.1 6e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313127560|ref|YP_004037830.1| - 5.3e-06 25.3 0.0 7.8e-06 24.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|313127560|ref|YP_004037830.1| - 2.3e-05 24.3 9.6 0.00013 21.9 4.5 2.6 2 1 0 2 2 2 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|313127560|ref|YP_004037830.1| - 0.00021 20.3 1.6 0.23 10.3 0.1 3.2 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein KR PF08659.5 gi|313127560|ref|YP_004037830.1| - 0.00023 20.9 3.8 0.034 13.8 0.3 2.3 1 1 1 2 2 2 2 KR domain NAD_binding_4 PF07993.7 gi|313127560|ref|YP_004037830.1| - 0.00025 20.0 0.0 0.026 13.4 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|313127560|ref|YP_004037830.1| - 0.0033 16.7 0.2 0.0053 16.0 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family CoA_binding_2 PF13380.1 gi|313127560|ref|YP_004037830.1| - 0.027 14.6 0.5 0.088 12.9 0.2 2.0 2 1 0 2 2 2 0 CoA binding domain 2-Hacid_dh_C PF02826.14 gi|313127560|ref|YP_004037830.1| - 0.046 12.8 0.1 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|313127560|ref|YP_004037830.1| - 0.063 13.2 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DHBP_synthase PF00926.14 gi|313127561|ref|YP_004037831.1| - 1.6e-55 187.3 0.0 1.9e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase NUDIX PF00293.23 gi|313127561|ref|YP_004037831.1| - 0.017 14.7 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain CTP-dep_RFKase PF01982.11 gi|313127562|ref|YP_004037832.1| - 1e-43 147.8 0.0 1.4e-43 147.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.2 gi|313127562|ref|YP_004037832.1| - 2.9e-06 26.8 0.1 5.5e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313127562|ref|YP_004037832.1| - 7.2e-06 25.7 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313127562|ref|YP_004037832.1| - 0.00012 21.9 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|313127562|ref|YP_004037832.1| - 0.0002 20.6 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|313127562|ref|YP_004037832.1| - 0.0035 17.3 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|313127562|ref|YP_004037832.1| - 0.0035 17.6 0.0 0.0069 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|313127562|ref|YP_004037832.1| - 0.007 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|313127562|ref|YP_004037832.1| - 0.0075 15.7 0.3 0.017 14.6 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313127562|ref|YP_004037832.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|313127562|ref|YP_004037832.1| - 0.043 13.4 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Antitoxin-MazE PF04014.13 gi|313127562|ref|YP_004037832.1| - 0.054 13.2 0.3 0.11 12.2 0.2 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE HTH_DeoR PF08220.7 gi|313127562|ref|YP_004037832.1| - 0.13 11.8 0.2 0.47 10.0 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain TOBE PF03459.12 gi|313127563|ref|YP_004037833.1| - 0.084 12.9 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 TOBE domain tRNA-synt_1d PF00750.14 gi|313127564|ref|YP_004037834.1| - 4.3e-64 216.5 0.1 5.7e-64 216.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|313127564|ref|YP_004037834.1| - 3.7e-37 126.9 0.2 1e-36 125.4 0.1 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|313127564|ref|YP_004037834.1| - 2.9e-11 43.7 0.0 9.3e-11 42.1 0.0 2.0 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|313127564|ref|YP_004037834.1| - 0.0039 15.9 0.0 0.061 11.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) Jag_N PF14804.1 gi|313127564|ref|YP_004037834.1| - 0.083 12.9 0.1 0.31 11.1 0.1 2.0 1 0 0 1 1 1 0 Jag N-terminus CbiA PF01656.18 gi|313127565|ref|YP_004037835.1| - 7.3e-25 87.5 0.6 1.3e-24 86.6 0.4 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313127565|ref|YP_004037835.1| - 1.2e-14 54.4 0.0 1.8e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|313127565|ref|YP_004037835.1| - 1e-09 37.9 0.0 0.00041 19.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|313127565|ref|YP_004037835.1| - 6.6e-06 25.3 0.2 2e-05 23.7 0.1 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|313127565|ref|YP_004037835.1| - 0.00082 19.0 3.1 0.16 11.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|313127565|ref|YP_004037835.1| - 0.0014 17.7 3.3 0.0034 16.4 2.3 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.6 gi|313127565|ref|YP_004037835.1| - 0.002 17.2 1.8 0.0044 16.1 0.5 1.9 2 0 0 2 2 2 1 VirC1 protein SRP54 PF00448.17 gi|313127565|ref|YP_004037835.1| - 0.006 16.0 3.0 0.04 13.3 0.6 2.5 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain ParA PF10609.4 gi|313127565|ref|YP_004037835.1| - 0.0093 15.8 0.2 0.016 15.0 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like MobB PF03205.9 gi|313127565|ref|YP_004037835.1| - 0.014 15.0 0.1 0.037 13.7 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|313127565|ref|YP_004037835.1| - 0.015 15.0 4.7 0.026 14.2 0.7 3.1 3 0 0 3 3 2 0 Part of AAA domain AAA_10 PF12846.2 gi|313127565|ref|YP_004037835.1| - 0.029 13.8 0.5 0.051 12.9 0.3 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|313127565|ref|YP_004037835.1| - 0.035 13.5 3.2 0.097 12.0 2.3 1.8 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|313127565|ref|YP_004037835.1| - 0.037 13.4 2.6 0.12 11.7 0.5 2.3 2 1 0 2 2 2 0 YhjQ protein Mur_ligase_M PF08245.7 gi|313127565|ref|YP_004037835.1| - 0.074 13.0 0.5 0.14 12.1 0.4 1.4 1 0 0 1 1 1 0 Mur ligase middle domain APS_kinase PF01583.15 gi|313127565|ref|YP_004037835.1| - 0.11 12.0 0.2 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase eRF1_2 PF03464.10 gi|313127566|ref|YP_004037836.1| - 5.1e-36 123.9 0.0 1.2e-35 122.7 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|313127566|ref|YP_004037836.1| - 5.6e-28 97.4 0.0 2.2e-27 95.5 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|313127566|ref|YP_004037836.1| - 6.7e-25 87.1 0.0 1.1e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.5 gi|313127566|ref|YP_004037836.1| - 0.015 15.2 1.5 0.039 13.9 1.0 1.7 1 0 0 1 1 1 0 Zinc ribbon domain ATP-synt_D PF01813.12 gi|313127570|ref|YP_004037840.1| - 6.7e-62 208.5 11.9 8.9e-62 208.1 8.3 1.2 1 0 0 1 1 1 1 ATP synthase subunit D PAPA-1 PF04795.7 gi|313127570|ref|YP_004037840.1| - 8.4 7.1 13.0 2.4 8.9 6.5 2.0 2 0 0 2 2 2 0 PAPA-1-like conserved region ATP-synt_ab PF00006.20 gi|313127571|ref|YP_004037841.1| - 2.8e-59 200.2 0.0 3.7e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|313127571|ref|YP_004037841.1| - 7.2e-18 65.1 0.2 1.5e-17 64.1 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|313127571|ref|YP_004037841.1| - 2.2e-12 46.9 0.7 4.8e-12 45.8 0.5 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|313127571|ref|YP_004037841.1| - 0.0081 16.0 0.4 0.022 14.6 0.3 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|313127572|ref|YP_004037842.1| - 2.5e-93 311.5 0.0 3.6e-93 310.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|313127572|ref|YP_004037842.1| - 7.2e-19 68.3 0.6 1.5e-18 67.3 0.4 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|313127572|ref|YP_004037842.1| - 9.4e-13 48.1 3.7 9.4e-13 48.1 2.6 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Collagen_bind PF05737.7 gi|313127572|ref|YP_004037842.1| - 0.095 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Collagen binding domain Peptidase_M23 PF01551.17 gi|313127572|ref|YP_004037842.1| - 0.14 12.2 0.1 21 5.2 0.0 2.7 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.6 gi|313127572|ref|YP_004037842.1| - 0.47 10.2 2.4 2.4 7.9 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.12 gi|313127573|ref|YP_004037843.1| - 1.9e-19 69.8 0.1 2.3e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit FIST PF08495.5 gi|313127573|ref|YP_004037843.1| - 0.087 11.9 0.1 0.097 11.7 0.0 1.0 1 0 0 1 1 1 0 FIST N domain vATP-synt_AC39 PF01992.11 gi|313127574|ref|YP_004037844.1| - 8.1e-99 330.9 8.5 9.1e-99 330.7 5.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|313127574|ref|YP_004037844.1| - 0.13 12.6 2.8 1.2 9.4 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3209) vATP-synt_E PF01991.13 gi|313127575|ref|YP_004037845.1| - 9.4e-44 149.0 13.4 1.5e-43 148.4 9.3 1.3 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|313127575|ref|YP_004037845.1| - 0.00061 19.6 17.6 0.0011 18.7 11.0 2.0 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|313127575|ref|YP_004037845.1| - 0.0035 17.1 11.1 0.026 14.2 7.7 2.0 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|313127575|ref|YP_004037845.1| - 0.007 15.5 20.7 0.086 12.0 14.1 1.9 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) Rgp1 PF08737.5 gi|313127575|ref|YP_004037845.1| - 0.07 12.1 2.9 0.083 11.9 2.0 1.1 1 0 0 1 1 1 0 Rgp1 GCN5L1 PF06320.8 gi|313127575|ref|YP_004037845.1| - 0.15 11.9 6.5 0.26 11.1 4.5 1.4 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) DUF445 PF04286.7 gi|313127575|ref|YP_004037845.1| - 0.17 11.3 3.6 0.18 11.3 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) RapA_C PF12137.3 gi|313127575|ref|YP_004037845.1| - 0.45 9.3 8.4 0.61 8.8 5.8 1.2 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal Endonuc_Holl PF10107.4 gi|313127575|ref|YP_004037845.1| - 0.59 9.8 6.2 0.97 9.1 4.3 1.3 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase DivIVA PF05103.8 gi|313127575|ref|YP_004037845.1| - 1.6 8.7 12.8 7.3 6.6 8.7 2.1 1 1 0 1 1 1 0 DivIVA protein OmpH PF03938.9 gi|313127575|ref|YP_004037845.1| - 2.2 8.1 11.0 3.3 7.6 7.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) CAF-1_p150 PF11600.3 gi|313127575|ref|YP_004037845.1| - 3.8 6.8 18.1 5.5 6.3 12.6 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal DUF883 PF05957.8 gi|313127575|ref|YP_004037845.1| - 7.3 7.0 17.9 2.3 8.6 0.8 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) ATP-synt_C PF00137.16 gi|313127576|ref|YP_004037846.1| - 1.8e-15 56.5 10.0 2.2e-15 56.3 6.9 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|313127577|ref|YP_004037847.1| - 4.1e-71 239.8 26.9 3.7e-32 111.1 9.8 4.2 3 1 0 3 3 3 3 V-type ATPase 116kDa subunit family FlaC_arch PF05377.6 gi|313127577|ref|YP_004037847.1| - 0.00014 21.7 3.5 0.04 13.8 0.2 2.7 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) Spc24 PF08286.6 gi|313127577|ref|YP_004037847.1| - 0.0021 17.7 2.7 0.086 12.5 0.1 2.4 2 0 0 2 2 2 1 Spc24 subunit of Ndc80 DUF4140 PF13600.1 gi|313127577|ref|YP_004037847.1| - 0.004 17.5 4.2 0.67 10.4 1.2 2.3 2 0 0 2 2 2 2 N-terminal domain of unknown function (DUF4140) DUF4600 PF15372.1 gi|313127577|ref|YP_004037847.1| - 0.014 15.6 2.4 0.14 12.3 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4600) Prefoldin_2 PF01920.15 gi|313127577|ref|YP_004037847.1| - 0.019 14.6 2.0 0.65 9.7 0.5 2.3 2 0 0 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|313127577|ref|YP_004037847.1| - 0.042 13.7 4.0 0.54 10.1 0.2 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TBPIP PF07106.8 gi|313127577|ref|YP_004037847.1| - 0.071 12.6 2.9 0.55 9.7 0.5 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TPD52 PF04201.10 gi|313127577|ref|YP_004037847.1| - 0.078 12.7 4.8 3.1 7.5 0.2 2.2 2 0 0 2 2 2 0 Tumour protein D52 family Syntaxin-6_N PF09177.6 gi|313127577|ref|YP_004037847.1| - 0.13 12.7 2.2 3 8.2 0.1 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF812 PF05667.6 gi|313127577|ref|YP_004037847.1| - 0.14 10.6 0.5 0.24 9.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF812) DUF904 PF06005.7 gi|313127577|ref|YP_004037847.1| - 0.15 12.3 5.2 2.5 8.4 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) DUF2968 PF11180.3 gi|313127577|ref|YP_004037847.1| - 0.21 10.9 1.7 1.5 8.1 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DASH_Dad3 PF08656.5 gi|313127577|ref|YP_004037847.1| - 0.24 11.1 2.0 0.25 11.0 0.2 1.8 2 0 0 2 2 2 0 DASH complex subunit Dad3 CCDC-167 PF15188.1 gi|313127577|ref|YP_004037847.1| - 0.61 10.0 5.7 3.3 7.7 0.1 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 APG6 PF04111.7 gi|313127577|ref|YP_004037847.1| - 0.84 8.6 5.3 1.5 7.8 0.5 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 TMF_DNA_bd PF12329.3 gi|313127577|ref|YP_004037847.1| - 1.2 8.9 7.8 4.8 7.0 0.3 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Snapin_Pallidin PF14712.1 gi|313127577|ref|YP_004037847.1| - 1.6 9.1 5.4 8.7 6.7 0.4 2.3 2 0 0 2 2 2 0 Snapin/Pallidin DivIC PF04977.10 gi|313127577|ref|YP_004037847.1| - 2 7.9 6.6 0.55 9.7 0.5 2.3 2 0 0 2 2 2 0 Septum formation initiator bZIP_1 PF00170.16 gi|313127577|ref|YP_004037847.1| - 3.6 7.6 8.3 7.2 6.6 1.3 2.2 2 0 0 2 2 2 0 bZIP transcription factor ATP-synt_B PF00430.13 gi|313127578|ref|YP_004037848.1| - 4e-05 23.4 25.4 0.00065 19.5 11.8 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|313127578|ref|YP_004037848.1| - 0.0011 18.7 10.7 0.0017 18.1 6.9 1.5 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G PF03179.10 gi|313127578|ref|YP_004037848.1| - 0.018 15.3 23.4 0.13 12.5 16.2 2.1 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.8 gi|313127578|ref|YP_004037848.1| - 0.084 12.9 17.3 0.52 10.3 8.0 2.1 1 1 1 2 2 2 0 DivIVA protein DUF883 PF05957.8 gi|313127578|ref|YP_004037848.1| - 0.09 13.1 16.4 2.3 8.6 3.5 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.3 gi|313127578|ref|YP_004037848.1| - 0.28 10.3 26.5 0.21 10.7 8.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Muted PF14942.1 gi|313127578|ref|YP_004037848.1| - 0.33 10.8 12.6 0.55 10.0 8.7 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein V-SNARE PF05008.10 gi|313127578|ref|YP_004037848.1| - 1.3 9.2 12.5 0.3 11.2 2.3 2.6 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus YtxH PF12732.2 gi|313127578|ref|YP_004037848.1| - 1.3 9.3 11.3 1.3 9.4 0.3 2.5 2 1 0 2 2 2 0 YtxH-like protein DUF3435 PF11917.3 gi|313127578|ref|YP_004037848.1| - 1.7 7.2 9.2 1.9 7.1 6.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) U79_P34 PF03064.11 gi|313127578|ref|YP_004037848.1| - 1.9 7.9 7.4 2.2 7.7 5.1 1.0 1 0 0 1 1 1 0 HSV U79 / HCMV P34 GnsAB PF08178.6 gi|313127578|ref|YP_004037848.1| - 2.2 7.9 10.4 0.18 11.4 3.6 2.0 2 1 0 2 2 2 0 GnsA/GnsB family Atg14 PF10186.4 gi|313127578|ref|YP_004037848.1| - 3 6.7 8.5 3.3 6.5 5.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Caudo_TAP PF02413.12 gi|313127578|ref|YP_004037848.1| - 4.1 7.5 13.3 6.5 6.9 6.0 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein Mnd1 PF03962.10 gi|313127578|ref|YP_004037848.1| - 8.7 5.9 12.5 10 5.7 8.6 1.2 1 0 0 1 1 1 0 Mnd1 family Med8 PF10232.4 gi|313127578|ref|YP_004037848.1| - 9.3 5.6 9.4 11 5.4 6.5 1.2 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DUF4102 PF13356.1 gi|313127578|ref|YP_004037848.1| - 9.5 6.1 9.7 9.9 6.1 1.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4102) Methyltransf_11 PF08241.7 gi|313127579|ref|YP_004037849.1| - 1.6e-22 79.8 0.0 2.4e-22 79.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313127579|ref|YP_004037849.1| - 1.6e-18 66.9 0.1 2.2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|313127579|ref|YP_004037849.1| - 1.6e-15 56.9 0.0 2.1e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|313127579|ref|YP_004037849.1| - 1.1e-14 54.0 0.0 5.7e-12 45.2 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|313127579|ref|YP_004037849.1| - 2.8e-13 50.0 0.0 5.4e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127579|ref|YP_004037849.1| - 2.8e-12 46.9 0.0 4.3e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|313127579|ref|YP_004037849.1| - 3.5e-11 43.6 0.0 5.6e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127579|ref|YP_004037849.1| - 3.1e-09 36.8 0.0 1e-08 35.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|313127579|ref|YP_004037849.1| - 7.9e-07 28.3 0.0 9.9e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|313127579|ref|YP_004037849.1| - 1.2e-05 24.9 0.0 3.2e-05 23.5 0.0 1.8 2 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|313127579|ref|YP_004037849.1| - 3.4e-05 23.3 0.0 4.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|313127579|ref|YP_004037849.1| - 0.00021 20.7 0.0 0.00032 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|313127579|ref|YP_004037849.1| - 0.00055 19.0 0.0 0.00075 18.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.7 gi|313127579|ref|YP_004037849.1| - 0.0095 15.2 0.0 0.014 14.6 0.0 1.3 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_9 PF08003.6 gi|313127579|ref|YP_004037849.1| - 0.013 14.2 0.0 0.02 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|313127579|ref|YP_004037849.1| - 0.022 13.1 0.0 0.026 12.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.6 gi|313127579|ref|YP_004037849.1| - 0.034 13.5 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) ADPrib_exo_Tox PF03496.9 gi|313127579|ref|YP_004037849.1| - 0.084 12.0 0.0 1.4 8.0 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosyltransferase exoenzyme TehB PF03848.9 gi|313127579|ref|YP_004037849.1| - 0.14 11.2 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF1628 PF07790.6 gi|313127580|ref|YP_004037850.1| - 6.8e-07 29.9 2.0 8.9e-07 29.5 0.8 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) HTH_IclR PF09339.5 gi|313127582|ref|YP_004037852.1| - 0.0082 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313127582|ref|YP_004037852.1| - 0.098 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ETF PF01012.16 gi|313127583|ref|YP_004037853.1| - 1.3e-29 102.9 1.8 1.3e-29 102.9 1.3 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Zn_peptidase_2 PF04298.7 gi|313127583|ref|YP_004037853.1| - 0.11 11.7 0.0 0.31 10.3 0.0 1.6 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase ETF_alpha PF00766.14 gi|313127584|ref|YP_004037854.1| - 5.7e-37 125.2 0.2 1e-36 124.3 0.2 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|313127584|ref|YP_004037854.1| - 3.7e-30 104.8 0.1 6.5e-30 104.0 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain polyprenyl_synt PF00348.12 gi|313127585|ref|YP_004037855.1| - 1.4e-53 181.3 0.2 1.8e-53 181.0 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.8 gi|313127586|ref|YP_004037856.1| - 5.4e-110 367.6 7.2 6.4e-110 367.4 5.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF2975 PF11188.3 gi|313127586|ref|YP_004037856.1| - 7.4 6.2 8.6 1.2 8.8 2.2 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2975) Radical_SAM PF04055.16 gi|313127587|ref|YP_004037857.1| - 0.00015 21.9 0.7 0.0058 16.8 0.1 2.5 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|313127587|ref|YP_004037857.1| - 0.00023 21.1 0.1 0.00042 20.3 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|313127587|ref|YP_004037857.1| - 0.0023 18.0 0.0 0.0045 17.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PASTA PF03793.14 gi|313127587|ref|YP_004037857.1| - 0.067 12.8 0.3 0.36 10.5 0.4 2.2 2 1 0 2 2 2 0 PASTA domain PPR_3 PF13812.1 gi|313127587|ref|YP_004037857.1| - 0.089 13.1 0.0 0.38 11.1 0.0 2.1 1 0 0 1 1 1 0 Pentatricopeptide repeat domain Methyltransf_31 PF13847.1 gi|313127589|ref|YP_004037859.1| - 1.1e-07 31.5 0.0 1.5e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|313127589|ref|YP_004037859.1| - 2.8e-07 30.9 0.0 5.2e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|313127589|ref|YP_004037859.1| - 4.5e-07 30.1 0.0 8.8e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|313127589|ref|YP_004037859.1| - 1.2e-06 28.0 0.0 1.5e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|313127589|ref|YP_004037859.1| - 1.2e-06 29.0 0.0 1.9e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|313127589|ref|YP_004037859.1| - 2.9e-06 27.0 0.0 4.2e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313127589|ref|YP_004037859.1| - 6.1e-06 26.6 0.0 1.1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|313127589|ref|YP_004037859.1| - 9.3e-06 25.6 0.0 1.2e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|313127589|ref|YP_004037859.1| - 0.00025 20.1 0.0 0.00031 19.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|313127589|ref|YP_004037859.1| - 0.0032 16.6 0.0 0.0042 16.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|313127589|ref|YP_004037859.1| - 0.02 14.5 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|313127589|ref|YP_004037859.1| - 0.043 12.8 0.0 0.056 12.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|313127589|ref|YP_004037859.1| - 0.048 12.7 0.0 0.062 12.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|313127589|ref|YP_004037859.1| - 0.056 12.8 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|313127589|ref|YP_004037859.1| - 0.063 12.8 0.0 0.076 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|313127589|ref|YP_004037859.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TRAM PF01938.15 gi|313127591|ref|YP_004037861.1| - 6.2e-08 32.3 0.6 9e-08 31.7 0.4 1.2 1 0 0 1 1 1 1 TRAM domain TFX_C PF14601.1 gi|313127592|ref|YP_004037862.1| - 1.9e-32 110.8 0.0 2.8e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|313127592|ref|YP_004037862.1| - 5.4e-06 25.6 0.9 1.1e-05 24.5 0.6 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|313127592|ref|YP_004037862.1| - 0.00026 21.0 1.4 0.0006 19.9 1.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|313127592|ref|YP_004037862.1| - 0.00075 18.7 0.2 0.0014 17.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|313127592|ref|YP_004037862.1| - 0.0027 17.2 0.5 0.0058 16.2 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|313127592|ref|YP_004037862.1| - 0.0048 16.7 0.3 0.01 15.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|313127592|ref|YP_004037862.1| - 0.0059 16.6 0.2 0.025 14.6 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|313127592|ref|YP_004037862.1| - 0.007 16.1 0.1 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|313127592|ref|YP_004037862.1| - 0.0092 15.8 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|313127592|ref|YP_004037862.1| - 0.031 13.9 0.4 0.21 11.2 0.3 2.1 1 1 1 2 2 2 0 MarR family Sigma70_r4_2 PF08281.7 gi|313127592|ref|YP_004037862.1| - 0.063 12.7 0.3 0.14 11.6 0.1 1.7 1 1 1 2 2 2 0 Sigma-70, region 4 DUF2481 PF10654.4 gi|313127592|ref|YP_004037862.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Response_reg PF00072.19 gi|313127593|ref|YP_004037863.1| - 1.4e-20 73.4 0.0 1.6e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|313127594|ref|YP_004037864.1| - 6.8e-17 61.4 0.0 2e-16 59.9 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.1 gi|313127594|ref|YP_004037864.1| - 1.8e-13 51.2 0.4 2.9e-13 50.5 0.3 1.3 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|313127594|ref|YP_004037864.1| - 1.2e-07 31.9 0.1 1.7e-07 31.4 0.1 1.4 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|313127594|ref|YP_004037864.1| - 2.7e-07 30.7 0.1 5e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 GAF domain DUF1542 PF07564.6 gi|313127594|ref|YP_004037864.1| - 0.083 12.9 0.3 0.083 12.9 0.2 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) NTP_transferase PF00483.18 gi|313127595|ref|YP_004037865.1| - 1.3e-36 126.2 0.0 1.6e-36 125.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313127595|ref|YP_004037865.1| - 2e-08 34.4 0.1 2e-08 34.4 0.1 2.0 3 0 0 3 3 3 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|313127595|ref|YP_004037865.1| - 2.1e-05 24.1 0.1 4.4e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CitG PF01874.11 gi|313127596|ref|YP_004037866.1| - 0.068 12.3 0.1 0.068 12.3 0.0 1.0 1 0 0 1 1 1 0 ATP:dephospho-CoA triphosphoribosyl transferase tRNA_anti-codon PF01336.20 gi|313127597|ref|YP_004037867.1| - 0.0052 16.6 0.0 0.031 14.1 0.0 2.3 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Notch PF00066.12 gi|313127597|ref|YP_004037867.1| - 0.012 15.8 0.2 0.018 15.3 0.1 1.2 1 0 0 1 1 1 0 LNR domain PqqD PF05402.7 gi|313127597|ref|YP_004037867.1| - 0.087 12.8 2.9 0.82 9.7 0.7 2.6 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) RHH_1 PF01402.16 gi|313127599|ref|YP_004037869.1| - 1.1e-05 25.1 0.1 3.7e-05 23.4 0.1 2.0 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF4047 PF13256.1 gi|313127599|ref|YP_004037869.1| - 0.015 15.2 2.0 0.021 14.7 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) Phage_GP20 PF06810.6 gi|313127599|ref|YP_004037869.1| - 0.023 14.1 1.7 0.041 13.3 1.2 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 DUF3562 PF12085.3 gi|313127599|ref|YP_004037869.1| - 0.041 13.7 1.3 0.075 12.8 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3562) Sigma70_r4 PF04545.11 gi|313127599|ref|YP_004037869.1| - 0.069 12.4 0.8 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 DUF972 PF06156.8 gi|313127599|ref|YP_004037869.1| - 0.09 13.1 1.1 0.15 12.3 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) HR1 PF02185.11 gi|313127599|ref|YP_004037869.1| - 0.13 12.0 2.6 0.27 11.0 1.8 1.6 1 0 0 1 1 1 0 Hr1 repeat IncA PF04156.9 gi|313127599|ref|YP_004037869.1| - 0.22 11.0 3.6 0.3 10.6 2.5 1.2 1 0 0 1 1 1 0 IncA protein AhpC-TSA PF00578.16 gi|313127601|ref|YP_004037871.1| - 6.2e-26 90.5 0.0 8.3e-26 90.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313127601|ref|YP_004037871.1| - 2.9e-13 49.5 0.0 3.5e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|313127601|ref|YP_004037871.1| - 0.15 12.0 0.0 5.6 6.9 0.0 2.1 1 1 0 2 2 2 0 AhpC/TSA antioxidant enzyme OCIA PF07051.6 gi|313127602|ref|YP_004037872.1| - 0.042 13.2 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) Pil1 PF13805.1 gi|313127602|ref|YP_004037872.1| - 0.11 11.5 0.2 0.12 11.5 0.1 1.0 1 0 0 1 1 1 0 Eisosome component PIL1 MoCF_biosynth PF00994.19 gi|313127604|ref|YP_004037874.1| - 7.5e-31 106.4 0.2 1.1e-30 105.9 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CBS PF00571.23 gi|313127605|ref|YP_004037875.1| - 1.2e-27 95.3 4.2 9.5e-17 60.5 0.1 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|313127605|ref|YP_004037875.1| - 1.5e-21 76.2 15.3 5.5e-17 61.3 3.9 2.7 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|313127605|ref|YP_004037875.1| - 1.9e-05 24.1 5.0 1.9e-05 24.1 3.5 2.1 1 1 0 2 2 2 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|313127605|ref|YP_004037875.1| - 0.045 13.7 0.1 0.1 12.6 0.0 1.5 2 0 0 2 2 2 0 Peptidase MA superfamily Cupin_2 PF07883.6 gi|313127606|ref|YP_004037876.1| - 1.1e-16 60.1 0.2 1.7e-16 59.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|313127606|ref|YP_004037876.1| - 3.5e-08 32.9 0.0 5.2e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|313127606|ref|YP_004037876.1| - 1e-05 25.2 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|313127606|ref|YP_004037876.1| - 1.1e-05 25.1 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|313127606|ref|YP_004037876.1| - 0.0018 17.6 0.1 0.0033 16.7 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|313127606|ref|YP_004037876.1| - 0.017 14.7 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.3 gi|313127606|ref|YP_004037876.1| - 0.023 14.6 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like ARD PF03079.9 gi|313127606|ref|YP_004037876.1| - 0.097 12.6 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_7 PF12973.2 gi|313127606|ref|YP_004037876.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain DEAD PF00270.24 gi|313127607|ref|YP_004037877.1| - 1.8e-24 86.1 0.0 3.4e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|313127607|ref|YP_004037877.1| - 2.6e-11 43.2 0.0 6.8e-11 41.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|313127607|ref|YP_004037877.1| - 3.4e-08 33.5 0.0 6.2e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|313127607|ref|YP_004037877.1| - 0.0037 16.0 0.0 0.005 15.6 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF4428 PF14471.1 gi|313127607|ref|YP_004037877.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) CitMHS PF03600.11 gi|313127608|ref|YP_004037878.1| - 2e-47 161.4 0.0 2.1e-34 118.6 0.0 2.1 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|313127608|ref|YP_004037878.1| - 6.8e-23 80.0 4.7 1.4e-13 50.2 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|313127608|ref|YP_004037878.1| - 7.1e-23 81.2 36.0 3.7e-13 49.1 11.1 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region AraC_binding_2 PF14525.1 gi|313127609|ref|YP_004037879.1| - 0.095 12.2 0.5 0.36 10.3 0.1 1.9 1 1 1 2 2 2 0 AraC-binding-like domain DUF488 PF04343.8 gi|313127610|ref|YP_004037880.1| - 0.077 13.3 0.2 0.13 12.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF488 HTH_AsnC-type PF13404.1 gi|313127611|ref|YP_004037881.1| - 0.00015 21.2 0.1 0.00069 19.1 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|313127611|ref|YP_004037881.1| - 0.00098 18.4 0.0 0.0022 17.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313127611|ref|YP_004037881.1| - 0.069 12.8 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|313127611|ref|YP_004037881.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF4157 PF13699.1 gi|313127613|ref|YP_004037883.1| - 3.7e-30 103.8 1.2 9.3e-30 102.6 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF2726 PF10881.3 gi|313127613|ref|YP_004037883.1| - 0.017 14.7 0.0 0.039 13.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2726) Melittin PF01372.12 gi|313127615|ref|YP_004037885.1| - 0.078 12.3 0.4 0.19 11.0 0.3 1.7 1 0 0 1 1 1 0 Melittin TrbC PF04956.8 gi|313127615|ref|YP_004037885.1| - 0.29 11.1 5.0 0.16 11.9 0.3 2.1 1 1 1 2 2 2 0 TrbC/VIRB2 family Big_3_4 PF13754.1 gi|313127617|ref|YP_004037887.1| - 1.4e-07 31.6 54.3 6.1e-06 26.4 0.4 7.8 6 1 1 7 7 7 3 Bacterial Ig-like domain (group 3) ABC2_membrane_3 PF12698.2 gi|313127617|ref|YP_004037887.1| - 0.016 14.2 0.0 0.016 14.2 0.0 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein DUF3992 PF13157.1 gi|313127617|ref|YP_004037887.1| - 4.4 7.5 18.7 0.58 10.3 0.8 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF3992) Yip1 PF04893.12 gi|313127618|ref|YP_004037888.1| - 0.0045 16.5 1.1 0.0053 16.2 0.8 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1469 PF07332.6 gi|313127618|ref|YP_004037888.1| - 0.24 11.1 4.0 1.2 8.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) FixQ PF05545.6 gi|313127618|ref|YP_004037888.1| - 2.3 7.9 8.2 4.4 7.0 0.3 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF3149 PF11346.3 gi|313127618|ref|YP_004037888.1| - 3.1 7.4 8.7 0.52 9.9 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) DUF4131 PF13567.1 gi|313127619|ref|YP_004037889.1| - 5.5 6.3 6.9 3.4 7.0 0.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) SseC PF04888.7 gi|313127620|ref|YP_004037890.1| - 0.01 15.2 4.9 0.018 14.3 3.4 1.4 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family DUF883 PF05957.8 gi|313127620|ref|YP_004037890.1| - 0.47 10.8 5.7 3.3 8.1 0.0 3.8 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF883) MT0933_antitox PF14013.1 gi|313127620|ref|YP_004037890.1| - 0.71 10.0 8.7 1.1 9.4 1.2 3.7 2 1 2 4 4 4 0 MT0933-like antitoxin protein Tape_meas_lam_C PF09718.5 gi|313127620|ref|YP_004037890.1| - 5.4 6.9 15.4 0.48 10.3 0.7 4.2 3 1 1 4 4 4 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF883 PF05957.8 gi|313127622|ref|YP_004037892.1| - 0.046 14.1 0.9 0.2 12.0 0.2 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4105 PF13387.1 gi|313127623|ref|YP_004037893.1| - 0.15 11.2 0.4 0.21 10.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) HMG14_17 PF01101.13 gi|313127623|ref|YP_004037893.1| - 2.6 8.7 4.7 1.3 9.7 0.2 2.1 2 0 0 2 2 2 0 HMG14 and HMG17 VPEP PF07589.6 gi|313127624|ref|YP_004037894.1| - 0.12 12.2 4.9 0.3 11.0 3.4 1.7 1 0 0 1 1 1 0 PEP-CTERM motif DUF4605 PF15378.1 gi|313127624|ref|YP_004037894.1| - 1.5 8.5 5.2 5.3 6.8 3.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4605) DUF1469 PF07332.6 gi|313127625|ref|YP_004037895.1| - 0.025 14.3 1.2 0.025 14.3 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) SecD-TM1 PF13721.1 gi|313127625|ref|YP_004037895.1| - 0.14 12.4 0.1 0.14 12.4 0.1 1.4 2 0 0 2 2 2 0 SecD export protein N-terminal TM region AJAP1_PANP_C PF15298.1 gi|313127625|ref|YP_004037895.1| - 0.21 11.4 2.8 0.082 12.7 0.2 1.6 1 1 1 2 2 2 0 AJAP1/PANP C-terminus DUF1628 PF07790.6 gi|313127625|ref|YP_004037895.1| - 0.32 11.7 7.7 3.6 8.4 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) DUF4282 PF14110.1 gi|313127625|ref|YP_004037895.1| - 2.2 8.5 6.7 3.2 8.0 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF996 PF06195.8 gi|313127625|ref|YP_004037895.1| - 6.6 6.7 9.5 1.4 8.9 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF996) Tetraspannin PF00335.15 gi|313127626|ref|YP_004037896.1| - 0.03 13.5 0.5 0.041 13.1 0.3 1.1 1 0 0 1 1 1 0 Tetraspanin family MFS_Mycoplasma PF07672.8 gi|313127626|ref|YP_004037896.1| - 0.05 12.7 0.5 0.066 12.3 0.3 1.1 1 0 0 1 1 1 0 Mycoplasma MFS transporter Antitoxin-MazE PF04014.13 gi|313127627|ref|YP_004037897.1| - 0.064 13.0 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DUF1250 PF06855.7 gi|313127628|ref|YP_004037898.1| - 0.083 12.4 0.0 0.29 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1250) Zot PF05707.7 gi|313127629|ref|YP_004037899.1| - 8.8e-06 25.3 0.7 5.7e-05 22.6 0.0 2.1 1 1 1 2 2 2 1 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|313127629|ref|YP_004037899.1| - 0.0035 16.7 0.0 0.007 15.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|313127629|ref|YP_004037899.1| - 0.0098 16.0 0.0 0.045 13.9 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|313127629|ref|YP_004037899.1| - 0.017 14.5 0.0 0.097 12.1 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|313127629|ref|YP_004037899.1| - 0.019 15.0 0.1 0.078 13.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313127629|ref|YP_004037899.1| - 0.032 15.0 0.7 0.11 13.2 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313127629|ref|YP_004037899.1| - 0.043 13.5 0.1 0.71 9.5 0.0 2.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|313127629|ref|YP_004037899.1| - 0.074 12.8 0.1 0.27 11.0 0.0 1.9 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|313127629|ref|YP_004037899.1| - 0.11 11.9 0.5 12 5.1 0.0 2.5 3 0 0 3 3 3 0 AAA-like domain Pox_RNA_Pol_19 PF05320.7 gi|313127629|ref|YP_004037899.1| - 0.19 11.4 1.6 0.47 10.1 0.0 2.1 2 0 0 2 2 2 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit AAA_5 PF07728.9 gi|313127630|ref|YP_004037900.1| - 1.4e-16 60.4 0.0 2.6e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313127630|ref|YP_004037900.1| - 2e-06 28.0 0.0 5e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|313127630|ref|YP_004037900.1| - 1.2e-05 25.4 0.1 0.0003 20.8 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|313127630|ref|YP_004037900.1| - 8.4e-05 23.3 0.8 0.00062 20.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|313127630|ref|YP_004037900.1| - 0.00022 20.8 0.0 0.0013 18.3 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313127630|ref|YP_004037900.1| - 0.00082 19.5 0.2 0.0052 16.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|313127630|ref|YP_004037900.1| - 0.0014 17.7 0.0 0.058 12.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|313127630|ref|YP_004037900.1| - 0.0015 18.4 0.0 0.0047 16.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|313127630|ref|YP_004037900.1| - 0.0019 18.1 0.0 0.0037 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313127630|ref|YP_004037900.1| - 0.0025 18.1 0.1 0.0069 16.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain Rad17 PF03215.10 gi|313127630|ref|YP_004037900.1| - 0.0037 16.0 0.0 0.0053 15.4 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein HTH_24 PF13412.1 gi|313127630|ref|YP_004037900.1| - 0.0045 16.3 0.1 0.0093 15.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Arch_ATPase PF01637.13 gi|313127630|ref|YP_004037900.1| - 0.013 15.2 0.0 0.85 9.2 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase RNA_helicase PF00910.17 gi|313127630|ref|YP_004037900.1| - 0.016 15.4 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|313127630|ref|YP_004037900.1| - 0.016 15.0 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|313127630|ref|YP_004037900.1| - 0.022 14.1 0.0 0.045 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain IPT PF01745.11 gi|313127630|ref|YP_004037900.1| - 0.027 13.6 0.0 0.059 12.5 0.0 1.5 2 0 0 2 2 1 0 Isopentenyl transferase ABC_tran PF00005.22 gi|313127630|ref|YP_004037900.1| - 0.03 14.5 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter CbbQ_C PF08406.5 gi|313127630|ref|YP_004037900.1| - 0.046 13.7 0.1 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal Sigma54_activat PF00158.21 gi|313127630|ref|YP_004037900.1| - 0.073 12.5 0.0 0.24 10.8 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|313127630|ref|YP_004037900.1| - 0.076 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313127630|ref|YP_004037900.1| - 0.15 11.6 0.1 0.41 10.2 0.1 1.8 1 1 0 1 1 1 0 NACHT domain ResIII PF04851.10 gi|313127630|ref|YP_004037900.1| - 0.17 11.6 0.0 1.2 8.8 0.0 2.0 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit IBR PF01485.16 gi|313127631|ref|YP_004037901.1| - 0.032 14.0 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 IBR domain Sgf11 PF08209.6 gi|313127631|ref|YP_004037901.1| - 0.052 12.8 1.1 1.1 8.5 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|313127631|ref|YP_004037901.1| - 0.06 13.0 0.3 0.071 12.8 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|313127631|ref|YP_004037901.1| - 0.082 12.7 0.9 0.14 12.0 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|313127631|ref|YP_004037901.1| - 0.092 12.2 1.3 0.21 11.0 0.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|313127631|ref|YP_004037901.1| - 0.11 11.7 1.4 3.1 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|313127631|ref|YP_004037901.1| - 0.14 12.2 2.6 0.2 11.6 1.1 1.7 2 0 0 2 2 2 0 zinc-finger TFIIS_C PF01096.13 gi|313127631|ref|YP_004037901.1| - 0.15 11.7 0.8 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CCHC PF00098.18 gi|313127631|ref|YP_004037901.1| - 1.6 8.7 5.6 0.46 10.5 0.6 2.1 2 0 0 2 2 2 0 Zinc knuckle zf-TFIIB PF13453.1 gi|313127631|ref|YP_004037901.1| - 3.4 6.9 5.1 3.3 6.9 0.5 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger VWA_2 PF13519.1 gi|313127632|ref|YP_004037902.1| - 3.8e-12 46.6 0.0 7.9e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|313127632|ref|YP_004037902.1| - 7.7e-09 35.5 0.0 1.9e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|313127632|ref|YP_004037902.1| - 0.00019 21.1 0.0 0.00038 20.1 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1427 PF07235.6 gi|313127634|ref|YP_004037904.1| - 0.27 11.3 2.3 0.31 11.1 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1427) DUF3487 PF11990.3 gi|313127634|ref|YP_004037904.1| - 0.95 8.8 3.2 1.1 8.6 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) LHC PF00556.15 gi|313127634|ref|YP_004037904.1| - 4.9 7.0 9.7 0.56 10.1 3.0 2.0 1 1 1 2 2 2 0 Antenna complex alpha/beta subunit OppC_N PF12911.2 gi|313127635|ref|YP_004037905.1| - 0.2 11.0 1.0 0.37 10.1 0.2 1.9 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Phage_integrase PF00589.17 gi|313127637|ref|YP_004037907.1| - 1.1e-08 34.9 0.0 3.8e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|313127637|ref|YP_004037907.1| - 5e-06 26.4 0.1 6.2e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Integrase DUF2188 PF09954.4 gi|313127640|ref|YP_004037910.1| - 2e-13 50.0 0.9 2.2e-13 49.8 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) Peptidase_M10 PF00413.19 gi|313127641|ref|YP_004037911.1| - 9e-09 35.2 0.7 0.0013 18.4 0.0 2.5 2 1 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.1 gi|313127641|ref|YP_004037911.1| - 1.7e-05 25.3 0.6 0.00045 20.7 0.0 2.5 2 1 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.3 gi|313127641|ref|YP_004037911.1| - 2.6e-05 23.6 0.0 4.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Dual-action HEIGH metallo-peptidase Peptidase_M54 PF07998.6 gi|313127641|ref|YP_004037911.1| - 0.00078 19.2 0.1 0.0013 18.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.1 gi|313127641|ref|YP_004037911.1| - 0.0077 15.7 0.1 0.06 12.8 0.0 2.1 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.8 gi|313127641|ref|YP_004037911.1| - 0.0079 15.7 0.3 0.019 14.5 0.2 1.7 1 1 0 1 1 1 1 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.1 gi|313127641|ref|YP_004037911.1| - 0.012 15.5 2.9 0.027 14.4 0.3 2.3 1 1 1 2 2 2 0 Metallo-peptidase family M12 Reprolysin_2 PF13574.1 gi|313127641|ref|YP_004037911.1| - 0.022 14.8 1.1 0.071 13.1 0.4 2.0 1 1 1 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin PF01421.14 gi|313127641|ref|YP_004037911.1| - 0.042 13.4 0.1 0.35 10.4 0.0 2.0 2 0 0 2 2 2 0 Reprolysin (M12B) family zinc metalloprotease Peptidase_M66 PF10462.4 gi|313127641|ref|YP_004037911.1| - 0.059 12.2 0.1 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 Peptidase M66 HTH_27 PF13463.1 gi|313127642|ref|YP_004037912.1| - 0.00052 20.2 0.1 0.00078 19.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|313127642|ref|YP_004037912.1| - 0.0022 17.7 0.2 0.0035 17.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.9 gi|313127642|ref|YP_004037912.1| - 0.006 16.3 1.0 0.018 14.8 0.5 1.8 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family Cdc6_C PF09079.6 gi|313127642|ref|YP_004037912.1| - 0.008 15.8 0.2 0.0093 15.6 0.1 1.2 1 0 0 1 1 1 1 CDC6, C terminal Mrr_N PF14338.1 gi|313127642|ref|YP_004037912.1| - 0.035 14.1 0.1 0.051 13.6 0.1 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain DUF4364 PF14277.1 gi|313127642|ref|YP_004037912.1| - 0.077 12.6 0.1 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) ADK_lid PF05191.9 gi|313127643|ref|YP_004037913.1| - 0.0024 17.4 0.4 0.0078 15.8 0.0 1.9 2 0 0 2 2 2 1 Adenylate kinase, active site lid zinc-ribbons_6 PF07191.7 gi|313127643|ref|YP_004037913.1| - 0.14 11.9 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons DnaJ PF00226.26 gi|313127645|ref|YP_004037915.1| - 0.00076 19.1 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Phage_integrase PF00589.17 gi|313127646|ref|YP_004037916.1| - 3.5e-08 33.2 0.0 1.7e-07 31.1 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|313127646|ref|YP_004037916.1| - 0.00016 21.7 0.1 0.0004 20.4 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain NT5C PF06941.7 gi|313127646|ref|YP_004037916.1| - 0.064 12.7 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Col_cuticle_N PF01484.12 gi|313127647|ref|YP_004037917.1| - 0.0072 15.9 0.2 0.0072 15.9 0.1 4.7 6 0 0 6 6 6 1 Nematode cuticle collagen N-terminal domain Fer2 PF00111.22 gi|313127648|ref|YP_004037918.1| - 5.7e-12 45.2 0.0 1.1e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.26 gi|313127648|ref|YP_004037918.1| - 3.9e-11 42.5 0.0 8.3e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|313127648|ref|YP_004037918.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein Adaptin_N PF01602.15 gi|313127649|ref|YP_004037919.1| - 2.3e-05 22.9 0.0 3.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Adaptin N terminal region HEAT_2 PF13646.1 gi|313127649|ref|YP_004037919.1| - 3.6e-05 23.9 6.8 9.8e-05 22.5 0.3 3.2 1 1 1 2 2 2 2 HEAT repeats Cnd1 PF12717.2 gi|313127649|ref|YP_004037919.1| - 0.00017 21.4 0.0 0.00024 21.0 0.0 1.3 1 0 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.1 gi|313127649|ref|YP_004037919.1| - 4.5 7.8 13.2 3.7 8.1 0.1 4.4 4 1 1 5 5 5 0 HEAT-like repeat Cas_Cas4 PF01930.12 gi|313127650|ref|YP_004037920.1| - 0.0005 20.0 0.1 0.011 15.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 Sua5_yciO_yrdC PF01300.13 gi|313127651|ref|YP_004037921.1| - 1.2e-49 167.9 0.0 1.4e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Glyoxalase_2 PF12681.2 gi|313127651|ref|YP_004037921.1| - 0.068 13.7 0.3 0.61 10.7 0.0 2.2 2 0 0 2 2 2 0 Glyoxalase-like domain AhpC-TSA PF00578.16 gi|313127652|ref|YP_004037922.1| - 4.4e-18 65.1 0.0 5.5e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|313127652|ref|YP_004037922.1| - 1.9e-06 27.4 0.0 4.9e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|313127652|ref|YP_004037922.1| - 0.0042 16.9 0.0 0.44 10.4 0.0 2.1 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme GST_N_3 PF13417.1 gi|313127653|ref|YP_004037923.1| - 1.7e-15 56.9 0.0 2.1e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|313127653|ref|YP_004037923.1| - 2.7e-14 52.8 0.2 3.8e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|313127653|ref|YP_004037923.1| - 1.1e-12 47.7 0.0 1.4e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|313127653|ref|YP_004037923.1| - 0.00024 21.1 0.0 0.0003 20.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|313127653|ref|YP_004037923.1| - 0.13 12.5 0.1 0.13 12.5 0.1 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|313127653|ref|YP_004037923.1| - 0.14 12.3 0.1 0.21 11.8 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain DUF21 PF01595.15 gi|313127654|ref|YP_004037924.1| - 2.4e-52 176.8 1.0 3.5e-52 176.3 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|313127654|ref|YP_004037924.1| - 3.6e-20 71.4 3.2 5.3e-11 42.1 0.1 2.6 2 0 0 2 2 2 2 CBS domain CorC_HlyC PF03471.12 gi|313127654|ref|YP_004037924.1| - 1.5e-19 69.5 1.8 1.5e-19 69.5 1.2 1.8 2 0 0 2 2 2 1 Transporter associated domain PHO4 PF01384.15 gi|313127655|ref|YP_004037925.1| - 9.1e-43 146.1 31.1 9.1e-43 146.1 21.6 1.7 1 1 0 1 1 1 1 Phosphate transporter family HAMP PF00672.20 gi|313127656|ref|YP_004037926.1| - 0.23 11.6 2.4 0.33 11.1 1.6 1.3 1 0 0 1 1 1 0 HAMP domain HTH_20 PF12840.2 gi|313127657|ref|YP_004037927.1| - 4.9e-15 55.0 0.1 9.7e-15 54.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313127657|ref|YP_004037927.1| - 2.6e-08 33.1 0.0 4.2e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313127657|ref|YP_004037927.1| - 1.5e-05 24.5 0.0 3.1e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|313127657|ref|YP_004037927.1| - 2.1e-05 24.0 0.0 3.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|313127657|ref|YP_004037927.1| - 0.0062 16.2 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|313127657|ref|YP_004037927.1| - 0.0066 16.5 0.0 0.015 15.3 0.0 1.6 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) MarR PF01047.17 gi|313127657|ref|YP_004037927.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|313127657|ref|YP_004037927.1| - 0.022 14.5 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix CDC37_C PF08564.5 gi|313127657|ref|YP_004037927.1| - 0.053 13.3 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 Cdc37 C terminal domain HTH_34 PF13601.1 gi|313127657|ref|YP_004037927.1| - 0.066 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Metallophos_2 PF12850.2 gi|313127658|ref|YP_004037928.1| - 8e-19 67.9 0.2 1.1e-18 67.5 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|313127658|ref|YP_004037928.1| - 1e-05 25.0 0.1 0.006 15.9 0.0 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Cation_efflux PF01545.16 gi|313127659|ref|YP_004037929.1| - 1e-48 165.8 0.6 1.2e-48 165.6 0.4 1.0 1 0 0 1 1 1 1 Cation efflux family Flg_new PF09479.5 gi|313127659|ref|YP_004037929.1| - 0.16 12.0 0.3 0.54 10.3 0.2 1.9 1 0 0 1 1 1 0 Listeria-Bacteroides repeat domain (List_Bact_rpt) IncA PF04156.9 gi|313127659|ref|YP_004037929.1| - 0.72 9.4 0.0 0.72 9.4 0.0 2.3 2 0 0 2 2 2 0 IncA protein Beta_elim_lyase PF01212.16 gi|313127660|ref|YP_004037930.1| - 1.2e-86 290.4 1.0 1.4e-86 290.2 0.7 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|313127660|ref|YP_004037930.1| - 5.7e-11 41.9 0.0 7.4e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|313127660|ref|YP_004037930.1| - 1.7e-05 24.0 0.0 0.0051 15.8 0.0 2.3 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|313127660|ref|YP_004037930.1| - 0.033 12.4 0.3 0.084 11.1 0.2 1.7 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DoxX PF07681.7 gi|313127661|ref|YP_004037931.1| - 1.7e-06 28.3 10.3 1.7e-06 28.3 7.1 2.1 1 1 0 2 2 2 1 DoxX DoxD PF04173.8 gi|313127661|ref|YP_004037931.1| - 0.00011 21.9 4.4 0.00016 21.4 3.0 1.3 1 0 0 1 1 1 1 TQO small subunit DoxD Peptidase_M29 PF02073.10 gi|313127662|ref|YP_004037932.1| - 2.3e-112 375.6 2.2 2.6e-112 375.5 1.5 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_S24 PF00717.18 gi|313127662|ref|YP_004037932.1| - 0.1 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Peptidase S24-like zf-C3HC4_3 PF13920.1 gi|313127663|ref|YP_004037933.1| - 0.013 15.1 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-HIT PF04438.11 gi|313127663|ref|YP_004037933.1| - 0.049 13.2 0.6 0.061 12.9 0.4 1.1 1 0 0 1 1 1 0 HIT zinc finger zf-Di19 PF05605.7 gi|313127663|ref|YP_004037933.1| - 0.07 13.2 0.1 0.097 12.8 0.1 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-FCS PF06467.9 gi|313127663|ref|YP_004037933.1| - 0.071 12.7 0.1 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF2296 PF10058.4 gi|313127663|ref|YP_004037933.1| - 0.073 12.8 0.1 0.079 12.7 0.1 1.1 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) PyrI_C PF02748.10 gi|313127663|ref|YP_004037933.1| - 0.095 12.1 0.4 0.1 12.0 0.3 1.3 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain HTH_24 PF13412.1 gi|313127664|ref|YP_004037934.1| - 1.8e-12 46.4 0.1 4.1e-12 45.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|313127664|ref|YP_004037934.1| - 3.7e-12 45.7 0.0 6.8e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|313127664|ref|YP_004037934.1| - 1.3e-08 34.2 0.3 2.5e-08 33.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|313127664|ref|YP_004037934.1| - 1.7e-08 34.0 0.1 3.4e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313127664|ref|YP_004037934.1| - 7.5e-08 32.0 0.5 2.1e-07 30.6 0.0 2.0 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313127664|ref|YP_004037934.1| - 5.4e-07 29.1 0.1 2.3e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|313127664|ref|YP_004037934.1| - 3.4e-06 26.6 0.2 8.2e-06 25.4 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|313127664|ref|YP_004037934.1| - 1.8e-05 24.6 0.0 9.4e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|313127664|ref|YP_004037934.1| - 5.2e-05 22.6 0.1 0.00037 19.9 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|313127664|ref|YP_004037934.1| - 5.4e-05 22.5 0.2 0.00014 21.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|313127664|ref|YP_004037934.1| - 0.00015 21.4 0.1 0.00063 19.3 0.0 2.0 3 0 0 3 3 3 1 MarR family HTH_10 PF04967.7 gi|313127664|ref|YP_004037934.1| - 0.00017 21.0 0.1 0.00044 19.7 0.0 1.7 2 0 0 2 2 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|313127664|ref|YP_004037934.1| - 0.00018 21.1 0.0 0.0004 19.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313127664|ref|YP_004037934.1| - 0.00043 19.8 0.1 0.00076 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|313127664|ref|YP_004037934.1| - 0.0019 17.8 0.0 0.0041 16.7 0.0 1.6 2 0 0 2 2 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|313127664|ref|YP_004037934.1| - 0.0034 17.2 0.0 0.0091 15.9 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.1 gi|313127664|ref|YP_004037934.1| - 0.0038 16.7 0.0 0.0087 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|313127664|ref|YP_004037934.1| - 0.0043 16.7 0.0 0.0078 15.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Mga PF05043.8 gi|313127664|ref|YP_004037934.1| - 0.0044 17.2 0.0 0.026 14.8 0.0 2.2 3 0 0 3 3 2 1 Mga helix-turn-helix domain HTH_41 PF14502.1 gi|313127664|ref|YP_004037934.1| - 0.0087 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313127664|ref|YP_004037934.1| - 0.011 16.0 0.2 0.052 13.8 0.0 2.1 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|313127664|ref|YP_004037934.1| - 0.015 15.4 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|313127664|ref|YP_004037934.1| - 0.015 14.4 0.3 0.034 13.3 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.1 gi|313127664|ref|YP_004037934.1| - 0.016 15.2 0.0 0.035 14.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|313127664|ref|YP_004037934.1| - 0.037 13.7 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.15 gi|313127664|ref|YP_004037934.1| - 0.04 14.0 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator RPA_C PF08784.6 gi|313127664|ref|YP_004037934.1| - 0.048 14.0 0.3 0.26 11.7 0.0 2.1 2 1 0 2 2 2 0 Replication protein A C terminal HTH_40 PF14493.1 gi|313127664|ref|YP_004037934.1| - 0.077 13.2 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|313127664|ref|YP_004037934.1| - 0.086 12.1 0.3 0.19 11.0 0.0 1.7 2 0 0 2 2 1 0 CodY helix-turn-helix domain HTH_29 PF13551.1 gi|313127664|ref|YP_004037934.1| - 0.12 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix GerE PF00196.14 gi|313127664|ref|YP_004037934.1| - 0.12 11.6 0.1 0.29 10.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.10 gi|313127664|ref|YP_004037934.1| - 0.13 12.1 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|313127664|ref|YP_004037934.1| - 0.15 11.5 0.2 0.34 10.3 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 Gln-synt_C PF00120.19 gi|313127665|ref|YP_004037935.1| - 1.3e-103 345.6 0.1 1.8e-103 345.2 0.1 1.2 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|313127665|ref|YP_004037935.1| - 2e-30 104.1 0.2 4.5e-30 103.0 0.0 1.7 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|313127666|ref|YP_004037936.1| - 4e-17 62.1 7.3 4e-17 62.1 5.1 2.0 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|313127666|ref|YP_004037936.1| - 3.2e-05 23.5 3.5 7.3e-05 22.3 2.4 1.6 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|313127666|ref|YP_004037936.1| - 0.081 13.1 0.4 0.21 11.8 0.2 1.6 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Virul_fac_BrkB PF03631.10 gi|313127667|ref|YP_004037937.1| - 2.3e-39 135.3 28.7 2.3e-39 135.3 19.9 2.0 2 0 0 2 2 2 1 Virulence factor BrkB IncA PF04156.9 gi|313127667|ref|YP_004037937.1| - 0.0039 16.7 0.0 0.0039 16.7 0.0 3.7 3 0 0 3 3 3 1 IncA protein Claudin_2 PF13903.1 gi|313127667|ref|YP_004037937.1| - 0.023 14.3 0.1 0.023 14.3 0.0 2.6 4 0 0 4 4 4 0 PMP-22/EMP/MP20/Claudin tight junction LPP PF04728.8 gi|313127667|ref|YP_004037937.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DUF2207 PF09972.4 gi|313127667|ref|YP_004037937.1| - 0.51 8.8 0.0 0.51 8.8 0.0 2.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) TRM PF02005.11 gi|313127668|ref|YP_004037938.1| - 5.5e-96 321.7 0.0 6.6e-96 321.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|313127668|ref|YP_004037938.1| - 1e-06 28.7 0.9 3e-06 27.2 0.6 1.9 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|313127668|ref|YP_004037938.1| - 1.1e-05 24.9 0.0 1.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|313127668|ref|YP_004037938.1| - 9.8e-05 21.6 0.1 0.00014 21.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Zn-ribbon_8 PF09723.5 gi|313127668|ref|YP_004037938.1| - 0.00013 21.8 0.7 0.0003 20.6 0.5 1.6 1 0 0 1 1 1 1 Zinc ribbon domain Methyltransf_31 PF13847.1 gi|313127668|ref|YP_004037938.1| - 0.0015 18.1 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|313127668|ref|YP_004037938.1| - 0.0052 16.2 0.1 0.0086 15.4 0.1 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|313127668|ref|YP_004037938.1| - 0.023 14.2 0.1 0.079 12.5 0.0 1.8 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|313127668|ref|YP_004037938.1| - 0.038 14.5 0.1 0.065 13.8 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|313127668|ref|YP_004037938.1| - 0.063 13.7 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain SWIM PF04434.12 gi|313127669|ref|YP_004037939.1| - 0.00023 20.5 0.1 0.00035 19.9 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger Pribosyltran_N PF13793.1 gi|313127671|ref|YP_004037941.1| - 2.6e-21 75.5 0.0 6.8e-20 70.9 0.0 2.4 2 1 1 3 3 3 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|313127671|ref|YP_004037941.1| - 6e-11 42.1 3.1 1.6e-10 40.7 0.1 2.8 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|313127671|ref|YP_004037941.1| - 8e-08 32.2 0.9 8e-08 32.2 0.6 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|313127671|ref|YP_004037941.1| - 5.4e-05 22.5 0.1 8.5e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|313127671|ref|YP_004037941.1| - 0.00064 19.0 0.0 0.004 16.4 0.0 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase Methyltransf_26 PF13659.1 gi|313127671|ref|YP_004037941.1| - 0.52 10.3 3.2 1.2 9.1 0.3 2.4 2 1 0 2 2 2 0 Methyltransferase domain UDG PF03167.14 gi|313127673|ref|YP_004037943.1| - 8.8e-24 83.7 0.0 1.1e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GCC2_GCC3 PF07699.8 gi|313127673|ref|YP_004037943.1| - 3.6 7.2 5.1 2.1 7.9 0.5 2.2 2 0 0 2 2 2 0 GCC2 and GCC3 Metallothio_PEC PF02068.11 gi|313127673|ref|YP_004037943.1| - 4.3 7.7 6.9 3.4 8.1 1.3 2.3 1 1 0 2 2 2 0 Plant PEC family metallothionein PLDc_N PF13396.1 gi|313127674|ref|YP_004037944.1| - 9.8e-07 28.3 4.4 9.8e-07 28.3 3.1 2.6 2 1 0 2 2 2 1 Phospholipase_D-nuclease N-terminal EcsB PF05975.7 gi|313127674|ref|YP_004037944.1| - 0.04 12.3 6.6 0.046 12.1 4.6 1.0 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF1634 PF07843.6 gi|313127674|ref|YP_004037944.1| - 0.36 10.4 9.1 0.18 11.4 3.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1634) YesK PF14150.1 gi|313127674|ref|YP_004037944.1| - 2.4 8.2 7.1 1.2 9.2 2.2 2.0 1 1 1 2 2 2 0 YesK-like protein DUF4199 PF13858.1 gi|313127674|ref|YP_004037944.1| - 4.8 7.0 9.5 6.8 6.5 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Herpes_LMP1 PF05297.6 gi|313127674|ref|YP_004037944.1| - 5.1 5.9 6.8 6 5.6 4.7 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF805 PF05656.9 gi|313127674|ref|YP_004037944.1| - 6.5 6.5 11.2 10 5.9 7.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF805) MAPEG PF01124.13 gi|313127675|ref|YP_004037945.1| - 0.057 13.0 0.2 0.088 12.4 0.1 1.5 1 1 0 1 1 1 0 MAPEG family DUF460 PF04312.8 gi|313127676|ref|YP_004037946.1| - 1.8e-50 170.0 0.7 7.9e-50 167.9 0.2 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DUF429 PF04250.8 gi|313127676|ref|YP_004037946.1| - 0.003 16.8 2.8 0.13 11.5 0.1 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF429) TMF_DNA_bd PF12329.3 gi|313127676|ref|YP_004037946.1| - 0.012 15.3 24.8 0.027 14.2 12.1 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|313127676|ref|YP_004037946.1| - 0.013 15.6 8.2 0.034 14.2 5.7 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.7 gi|313127676|ref|YP_004037946.1| - 0.028 14.1 7.9 0.1 12.3 5.5 2.0 1 0 0 1 1 1 0 Laminin Domain II FlaC_arch PF05377.6 gi|313127676|ref|YP_004037946.1| - 0.053 13.4 10.6 0.035 13.9 1.0 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Prefoldin PF02996.12 gi|313127676|ref|YP_004037946.1| - 0.086 12.4 8.6 1.2 8.7 2.4 2.6 2 0 0 2 2 2 0 Prefoldin subunit V_ATPase_I PF01496.14 gi|313127676|ref|YP_004037946.1| - 0.094 10.5 11.9 0.13 10.0 7.7 1.7 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|313127676|ref|YP_004037946.1| - 0.18 11.3 17.3 0.041 13.3 2.7 3.1 1 1 2 3 3 3 0 Septum formation initiator DUF342 PF03961.8 gi|313127676|ref|YP_004037946.1| - 0.26 9.6 9.4 0.47 8.8 6.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Semialdhyde_dhC PF02774.13 gi|313127676|ref|YP_004037946.1| - 0.49 10.2 3.1 1.1 9.0 1.4 2.1 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, dimerisation domain AAA_13 PF13166.1 gi|313127676|ref|YP_004037946.1| - 0.5 8.7 14.3 0.76 8.1 9.9 1.2 1 0 0 1 1 1 0 AAA domain SlyX PF04102.7 gi|313127676|ref|YP_004037946.1| - 0.54 10.6 9.5 1.1e+02 3.3 6.5 3.2 1 1 0 1 1 1 0 SlyX Vac_Fusion PF02346.11 gi|313127676|ref|YP_004037946.1| - 1.1 8.6 13.5 0.76 9.2 1.9 2.8 2 0 0 2 2 2 0 Chordopoxvirus fusion protein HALZ PF02183.13 gi|313127676|ref|YP_004037946.1| - 1.2 8.9 11.4 0.83 9.4 2.7 2.8 3 0 0 3 3 2 0 Homeobox associated leucine zipper GAS PF13851.1 gi|313127676|ref|YP_004037946.1| - 1.4 8.0 21.8 0.33 10.1 8.3 2.4 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|313127676|ref|YP_004037946.1| - 2.2 6.8 19.4 1.4 7.5 10.8 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein ADIP PF11559.3 gi|313127676|ref|YP_004037946.1| - 2.6 7.9 22.8 1.8 8.4 10.7 2.6 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Spc24 PF08286.6 gi|313127676|ref|YP_004037946.1| - 4.1 7.1 16.9 4.7 6.9 4.9 2.9 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 IncA PF04156.9 gi|313127676|ref|YP_004037946.1| - 4.3 6.8 32.5 0.064 12.8 4.3 2.8 2 1 1 3 3 3 0 IncA protein Atg14 PF10186.4 gi|313127676|ref|YP_004037946.1| - 5.7 5.7 21.2 3.1 6.6 4.5 2.3 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Nsp1_C PF05064.8 gi|313127676|ref|YP_004037946.1| - 9.7 5.8 12.7 1.3 8.6 0.6 3.0 2 1 0 3 3 2 0 Nsp1-like C-terminal region Band_7 PF01145.20 gi|313127677|ref|YP_004037947.1| - 8.1e-33 113.8 4.7 1.4e-32 112.9 3.2 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|313127677|ref|YP_004037947.1| - 0.0015 18.1 0.1 0.0027 17.2 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family SPW PF03779.9 gi|313127677|ref|YP_004037947.1| - 0.13 11.6 0.3 0.21 10.9 0.2 1.3 1 0 0 1 1 1 0 SPW repeat PhzC-PhzF PF02567.11 gi|313127679|ref|YP_004037949.1| - 7.4e-66 222.2 0.0 8.4e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Lactamase_B_2 PF12706.2 gi|313127680|ref|YP_004037950.1| - 6.9e-32 110.5 0.1 9.5e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|313127680|ref|YP_004037950.1| - 1.1e-16 61.0 4.2 3.4e-16 59.4 2.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|313127680|ref|YP_004037950.1| - 0.007 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 tRNase Z endonuclease SHOCT PF09851.4 gi|313127681|ref|YP_004037951.1| - 3.7e-09 35.7 0.4 1.3e-08 34.0 0.1 1.9 2 0 0 2 2 2 1 Short C-terminal domain SBF PF01758.11 gi|313127681|ref|YP_004037951.1| - 0.0011 18.4 1.8 0.0015 18.0 1.2 1.1 1 0 0 1 1 1 1 Sodium Bile acid symporter family MFS_1 PF07690.11 gi|313127681|ref|YP_004037951.1| - 0.012 14.3 0.0 0.012 14.3 0.0 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily GvpG PF05120.7 gi|313127681|ref|YP_004037951.1| - 0.022 14.5 0.5 0.034 13.9 0.4 1.3 1 0 0 1 1 1 0 Gas vesicle protein G DUF1707 PF08044.6 gi|313127681|ref|YP_004037951.1| - 0.044 13.5 0.6 0.073 12.8 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF1420 PF07220.6 gi|313116828|ref|YP_004037952.1| - 0.13 10.5 0.8 0.2 9.9 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1420) N6_N4_Mtase PF01555.13 gi|313116829|ref|YP_004037953.1| - 7.3e-38 130.3 0.1 3.4e-28 98.6 0.1 2.7 2 1 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|313116829|ref|YP_004037953.1| - 5.4e-12 45.7 0.0 1.5e-05 24.9 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|313116829|ref|YP_004037953.1| - 0.003 17.1 0.0 2.3 7.7 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 HATPase_c_3 PF13589.1 gi|313116830|ref|YP_004037954.1| - 1.6e-06 27.8 0.0 4.3e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CARDB PF07705.6 gi|313116831|ref|YP_004037955.1| - 6.7e-11 42.1 15.3 0.0064 16.5 0.1 4.6 4 0 0 4 4 4 4 CARDB DUF4352 PF11611.3 gi|313116831|ref|YP_004037955.1| - 0.002 18.2 11.0 1.2 9.2 0.3 4.4 4 2 1 6 6 6 3 Domain of unknown function (DUF4352) TraK PF06586.6 gi|313116831|ref|YP_004037955.1| - 0.027 13.6 0.1 0.44 9.6 0.0 2.5 2 0 0 2 2 2 0 TraK protein PapD_C PF02753.12 gi|313116831|ref|YP_004037955.1| - 0.033 14.0 1.0 1.1 9.1 0.1 3.4 3 1 0 3 3 3 0 Pili assembly chaperone PapD, C-terminal domain NOB1_Zn_bind PF08772.6 gi|313116831|ref|YP_004037955.1| - 0.069 12.9 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HEAT_2 PF13646.1 gi|313116834|ref|YP_004037958.1| - 7e-33 112.7 45.9 1.9e-11 44.0 2.0 7.8 2 2 5 7 7 7 7 HEAT repeats HEAT_EZ PF13513.1 gi|313116834|ref|YP_004037958.1| - 8.7e-24 83.3 45.8 1.9e-07 31.3 1.4 11.1 6 5 5 11 11 11 6 HEAT-like repeat Adaptin_N PF01602.15 gi|313116834|ref|YP_004037958.1| - 2.5e-23 82.1 0.0 1.7e-05 23.3 0.0 5.3 2 1 3 6 6 6 4 Adaptin N terminal region HEAT PF02985.17 gi|313116834|ref|YP_004037958.1| - 9.9e-21 71.9 19.8 8.7e-05 22.2 0.0 9.2 9 0 0 9 9 9 4 HEAT repeat Cnd1 PF12717.2 gi|313116834|ref|YP_004037958.1| - 8.9e-12 45.2 0.0 0.0082 16.0 0.0 5.2 4 1 1 5 5 5 3 non-SMC mitotic condensation complex subunit 1 HEAT_PBS PF03130.11 gi|313116834|ref|YP_004037958.1| - 9.6e-09 34.9 48.8 0.01 16.2 0.5 11.0 13 0 0 13 13 10 5 PBS lyase HEAT-like repeat DNA_alkylation PF08713.6 gi|313116834|ref|YP_004037958.1| - 2.3e-07 30.5 0.6 0.2 11.1 0.0 4.2 3 1 1 4 4 4 2 DNA alkylation repair enzyme Vac14_Fab1_bd PF12755.2 gi|313116834|ref|YP_004037958.1| - 4.9e-05 23.6 0.0 4.7 7.6 0.0 4.2 3 1 2 5 5 4 2 Vacuolar 14 Fab1-binding region Arm PF00514.18 gi|313116834|ref|YP_004037958.1| - 0.0068 16.2 6.9 1 9.2 0.0 6.6 8 0 0 8 8 8 1 Armadillo/beta-catenin-like repeat MMS19_N PF14500.1 gi|313116834|ref|YP_004037958.1| - 0.0079 15.4 0.6 2.4 7.3 0.0 3.9 4 1 1 5 5 5 1 Dos2-interacting transcription regulator of RNA-Pol-II DUF3385 PF11865.3 gi|313116834|ref|YP_004037958.1| - 0.024 14.5 0.1 0.82 9.5 0.0 3.5 4 1 1 5 5 5 0 Domain of unknown function (DUF3385) TIP120 PF08623.5 gi|313116834|ref|YP_004037958.1| - 0.035 13.6 0.4 11 5.5 0.0 3.3 3 0 0 3 3 3 0 TATA-binding protein interacting (TIP20) DUF4042 PF13251.1 gi|313116834|ref|YP_004037958.1| - 0.049 13.0 3.4 9.1 5.6 0.0 3.9 3 1 2 5 5 5 0 Domain of unknown function (DUF4042) CLASP_N PF12348.3 gi|313116834|ref|YP_004037958.1| - 0.062 12.6 0.1 1.7 7.9 0.0 2.7 3 0 0 3 3 3 0 CLASP N terminal APP_E2 PF12925.2 gi|313116834|ref|YP_004037958.1| - 0.11 12.1 0.5 0.29 10.6 0.0 2.0 3 0 0 3 3 3 0 E2 domain of amyloid precursor protein FANCI_S2 PF14676.1 gi|313116834|ref|YP_004037958.1| - 0.11 12.4 0.0 5.6 6.8 0.0 3.4 3 2 0 3 3 3 0 FANCI solenoid 2 Cohesin_HEAT PF12765.2 gi|313116834|ref|YP_004037958.1| - 6.1 6.9 14.7 50 3.9 0.0 6.1 5 1 1 6 6 5 0 HEAT repeat associated with sister chromatid cohesion DUF2262 PF10020.4 gi|313116835|ref|YP_004037959.1| - 0.0011 19.1 0.1 0.0012 19.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2262) Phage_integrase PF00589.17 gi|313116836|ref|YP_004037960.1| - 1.8e-05 24.5 0.3 1.8e-05 24.5 0.2 1.1 1 0 0 1 1 1 1 Phage integrase family UvrD_C_2 PF13538.1 gi|313116837|ref|YP_004037961.1| - 2.7e-10 40.3 0.0 5.3e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.1 gi|313116837|ref|YP_004037961.1| - 4.3e-08 33.0 0.0 6.5e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|313116837|ref|YP_004037961.1| - 0.00036 20.1 0.0 0.13 11.7 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|313116837|ref|YP_004037961.1| - 0.02 14.1 0.0 4.6 6.4 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|313116837|ref|YP_004037961.1| - 0.083 11.8 0.0 0.17 10.8 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.16 gi|313116837|ref|YP_004037961.1| - 0.17 11.1 0.0 16 4.6 0.0 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF2892 PF11127.3 gi|313116838|ref|YP_004037962.1| - 0.087 12.6 1.0 0.12 12.2 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) MARVEL PF01284.18 gi|313116838|ref|YP_004037962.1| - 0.11 12.2 1.8 0.14 11.9 1.3 1.0 1 0 0 1 1 1 0 Membrane-associating domain DDE_Tnp_IS240 PF13610.1 gi|313116841|ref|YP_004037965.1| - 4.3e-28 98.0 0.0 8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313116841|ref|YP_004037965.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313116841|ref|YP_004037965.1| - 0.0039 16.4 0.1 0.0076 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313116841|ref|YP_004037965.1| - 0.0062 16.6 0.2 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313116841|ref|YP_004037965.1| - 0.031 14.3 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313116841|ref|YP_004037965.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease EthD PF07110.6 gi|313116842|ref|YP_004037966.1| - 0.042 14.7 0.0 0.07 14.0 0.0 1.3 1 0 0 1 1 1 0 EthD domain Rnk_N PF14760.1 gi|313116843|ref|YP_004037967.1| - 5.6 7.1 17.0 6.9 6.8 0.1 6.4 7 0 0 7 7 7 0 Rnk N-terminus TPR_19 PF14559.1 gi|313116844|ref|YP_004037968.1| - 8.9e-07 29.1 28.5 0.27 11.5 0.0 10.5 9 4 1 10 10 10 3 Tetratricopeptide repeat BTAD PF03704.12 gi|313116844|ref|YP_004037968.1| - 0.00038 20.7 42.7 0.26 11.5 0.3 8.5 4 3 2 8 8 8 4 Bacterial transcriptional activator domain TPR_14 PF13428.1 gi|313116844|ref|YP_004037968.1| - 0.00051 20.4 54.4 6.4 7.6 1.9 13.8 7 4 7 14 14 14 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|313116844|ref|YP_004037968.1| - 0.0041 17.4 12.9 3.8 8.1 0.2 8.5 11 0 0 11 11 11 1 Tetratricopeptide repeat TraF PF13728.1 gi|313116844|ref|YP_004037968.1| - 0.02 14.3 0.6 0.84 9.0 0.1 3.8 4 2 2 6 6 6 0 F plasmid transfer operon protein TPR_17 PF13431.1 gi|313116844|ref|YP_004037968.1| - 0.049 13.8 0.9 59 4.2 0.0 5.2 7 0 0 7 7 7 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|313116844|ref|YP_004037968.1| - 0.076 12.9 24.7 2.1 8.3 0.4 6.5 7 2 2 9 9 9 0 Tetratricopeptide repeat DUF2376 PF09550.5 gi|313116844|ref|YP_004037968.1| - 5.4 7.2 16.2 33 4.7 0.2 6.7 6 0 0 6 6 6 0 Conserved hypothetical phage protein (DUF2376) AAA_16 PF13191.1 gi|313116845|ref|YP_004037969.1| - 0.0015 18.5 3.1 2.5 8.0 0.0 4.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_33 PF13671.1 gi|313116845|ref|YP_004037969.1| - 0.0062 16.4 2.5 0.23 11.3 0.1 3.8 4 1 0 4 4 4 1 AAA domain AAA_17 PF13207.1 gi|313116845|ref|YP_004037969.1| - 0.032 15.0 0.3 9.2 7.1 0.0 4.0 4 0 0 4 4 4 0 AAA domain RNase_H PF00075.19 gi|313116846|ref|YP_004037970.1| - 9.7e-10 38.9 0.0 3e-09 37.3 0.0 1.8 1 1 0 1 1 1 1 RNase H Peripla_BP_2 PF01497.13 gi|313116849|ref|YP_004037973.1| - 6e-12 45.1 0.0 8e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Pyr_redox_2 PF07992.9 gi|313116850|ref|YP_004037974.1| - 5.9e-08 32.8 2.0 1.2e-06 28.5 0.0 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313116850|ref|YP_004037974.1| - 8.2e-07 28.2 17.9 6.3e-05 22.0 1.0 3.7 3 1 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313116850|ref|YP_004037974.1| - 1.7e-05 24.9 0.8 0.15 12.0 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313116850|ref|YP_004037974.1| - 8.1e-05 21.2 0.1 0.00091 17.8 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|313116850|ref|YP_004037974.1| - 8.7e-05 21.5 1.5 0.0035 16.3 0.2 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|313116850|ref|YP_004037974.1| - 9.1e-05 21.6 0.2 9.1e-05 21.6 0.1 2.3 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313116850|ref|YP_004037974.1| - 0.00011 22.1 0.4 0.00011 22.1 0.3 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|313116850|ref|YP_004037974.1| - 0.00016 20.8 0.8 0.00056 19.0 0.1 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|313116850|ref|YP_004037974.1| - 0.00027 19.9 0.5 0.00027 19.9 0.4 3.4 2 1 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.22 gi|313116850|ref|YP_004037974.1| - 0.00059 20.1 2.5 0.0072 16.6 0.1 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313116850|ref|YP_004037974.1| - 0.0019 17.1 0.9 0.0019 17.1 0.6 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313116850|ref|YP_004037974.1| - 0.0029 16.7 2.1 0.0029 16.7 1.5 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|313116850|ref|YP_004037974.1| - 0.1 12.3 8.9 0.79 9.4 0.1 3.1 3 1 1 4 4 4 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|313116850|ref|YP_004037974.1| - 0.12 12.0 0.1 0.12 12.0 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPR_7 PF13176.1 gi|313116850|ref|YP_004037974.1| - 0.21 11.4 1.9 0.27 11.1 0.2 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat UDPG_MGDP_dh_N PF03721.9 gi|313116850|ref|YP_004037974.1| - 0.55 9.5 2.3 0.6 9.4 0.3 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NUDIX PF00293.23 gi|313116852|ref|YP_004037976.1| - 2.6e-22 78.9 0.2 5.7e-22 77.8 0.1 1.6 1 0 0 1 1 1 1 NUDIX domain Hydrolase_6 PF13344.1 gi|313116852|ref|YP_004037976.1| - 1.4e-20 73.0 0.0 8.6e-20 70.5 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313116852|ref|YP_004037976.1| - 3.3e-14 52.3 0.1 8.2e-14 51.0 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313116852|ref|YP_004037976.1| - 6.6e-06 26.6 0.4 0.00028 21.3 0.2 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|313116852|ref|YP_004037976.1| - 1.1e-05 25.6 0.0 6e-05 23.3 0.0 2.1 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX_4 PF14815.1 gi|313116852|ref|YP_004037976.1| - 0.023 14.0 0.0 0.062 12.7 0.0 1.7 1 0 0 1 1 1 0 NUDIX domain PrpR_N PF06506.6 gi|313116852|ref|YP_004037976.1| - 0.027 13.8 0.2 0.26 10.6 0.0 2.3 2 0 0 2 2 2 0 Propionate catabolism activator KH_3 PF13014.1 gi|313116852|ref|YP_004037976.1| - 0.091 12.4 0.0 0.26 10.9 0.0 1.8 1 0 0 1 1 1 0 KH domain MFS_1 PF07690.11 gi|313116853|ref|YP_004037977.1| - 7.5e-16 57.7 29.9 7.5e-16 57.7 20.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|313116853|ref|YP_004037977.1| - 0.0012 18.5 0.1 0.0012 18.5 0.1 2.7 3 0 0 3 3 3 1 MFS_1 like family HAP PF03866.8 gi|313116853|ref|YP_004037977.1| - 2.1 8.1 10.0 0.078 12.7 2.0 2.2 2 0 0 2 2 2 0 Hydrophobic abundant protein (HAP) PTA_PTB PF01515.14 gi|313116854|ref|YP_004037978.1| - 8.2e-93 310.9 0.0 1.1e-92 310.4 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|313116854|ref|YP_004037978.1| - 2.6e-68 230.3 0.9 3.4e-68 229.9 0.0 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|313116854|ref|YP_004037978.1| - 2.5e-28 98.8 0.3 5.6e-26 91.2 0.2 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain HTH_20 PF12840.2 gi|313116857|ref|YP_004037981.1| - 7e-12 44.9 0.0 1.2e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313116857|ref|YP_004037981.1| - 2e-05 23.8 0.0 4.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313116857|ref|YP_004037981.1| - 0.00072 19.1 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313116857|ref|YP_004037981.1| - 0.023 14.3 0.0 0.063 12.9 0.0 1.7 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|313116857|ref|YP_004037981.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.4 gi|313116857|ref|YP_004037981.1| - 0.083 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|313116857|ref|YP_004037981.1| - 0.09 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC AgrD PF05931.6 gi|313116857|ref|YP_004037981.1| - 0.12 12.0 0.1 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 Staphylococcal AgrD protein Phage_rep_org_N PF09681.5 gi|313116857|ref|YP_004037981.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) CD24 PF14984.1 gi|313116860|ref|YP_004037984.1| - 0.15 11.8 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 CD24 protein TAT_signal PF10518.4 gi|313116860|ref|YP_004037984.1| - 1.2 9.3 7.2 0.67 10.1 3.0 2.1 1 1 1 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_27 PF13463.1 gi|313116861|ref|YP_004037985.1| - 0.00015 22.0 0.1 0.00036 20.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|313116861|ref|YP_004037985.1| - 0.00032 20.3 0.0 0.00098 18.7 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313116861|ref|YP_004037985.1| - 0.0019 17.8 0.1 0.0052 16.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313116861|ref|YP_004037985.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|313116861|ref|YP_004037985.1| - 0.012 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|313116861|ref|YP_004037985.1| - 0.015 15.0 0.1 0.064 12.9 0.0 2.0 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|313116861|ref|YP_004037985.1| - 0.025 14.7 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|313116861|ref|YP_004037985.1| - 0.062 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|313116861|ref|YP_004037985.1| - 0.071 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PQQ_2 PF13360.1 gi|313116864|ref|YP_004037988.1| - 2.4e-29 102.4 16.5 3.8e-14 52.7 3.0 3.5 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|313116864|ref|YP_004037988.1| - 6.1e-11 42.2 33.5 0.025 14.8 0.6 8.1 8 2 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|313116864|ref|YP_004037988.1| - 3.4e-08 32.6 3.7 1.2 8.7 0.0 7.3 7 0 0 7 7 7 2 PQQ enzyme repeat ABC_transp_aux PF09822.4 gi|313116868|ref|YP_004037992.1| - 1.5e-19 70.5 0.0 1.7e-05 24.4 0.0 3.2 3 0 0 3 3 3 3 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|313116868|ref|YP_004037992.1| - 3.6e-12 46.2 7.7 0.00038 20.6 0.1 4.8 4 0 0 4 4 4 3 Domain of unknown function (DUF4350) SNase PF00565.12 gi|313116868|ref|YP_004037992.1| - 2.6e-10 40.4 0.0 1.4e-08 34.9 0.0 2.4 2 0 0 2 2 2 1 Staphylococcal nuclease homologue ThuA PF06283.6 gi|313116868|ref|YP_004037992.1| - 8.1e-08 32.2 0.1 0.00097 18.9 0.0 3.4 3 1 0 3 3 3 2 Trehalose utilisation UDPG_MGDP_dh_C PF03720.10 gi|313116868|ref|YP_004037992.1| - 0.0014 18.7 0.0 2.1 8.5 0.0 3.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF4159 PF13709.1 gi|313116868|ref|YP_004037992.1| - 0.0015 17.6 0.1 0.6 9.1 0.0 2.9 2 1 0 2 2 2 2 Domain of unknown function (DUF4159) DDOST_48kD PF03345.9 gi|313116868|ref|YP_004037992.1| - 0.0071 14.9 0.5 0.19 10.2 0.1 2.8 3 1 0 3 3 3 1 Oligosaccharyltransferase 48 kDa subunit beta NVEALA PF14055.1 gi|313116869|ref|YP_004037993.1| - 0.14 11.8 0.2 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 NVEALA protein TAT_signal PF10518.4 gi|313116869|ref|YP_004037993.1| - 0.39 10.8 3.4 0.97 9.6 2.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2370 PF10176.4 gi|313116870|ref|YP_004037994.1| - 0.047 13.0 0.6 0.079 12.2 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) Iron_permease PF04120.7 gi|313116870|ref|YP_004037994.1| - 0.84 9.2 3.2 1.3 8.5 2.3 1.3 1 0 0 1 1 1 0 Low affinity iron permease DUF4199 PF13858.1 gi|313116870|ref|YP_004037994.1| - 3.3 7.6 18.2 0.15 11.9 8.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) HTH_20 PF12840.2 gi|313116871|ref|YP_004037995.1| - 1.6e-05 24.6 0.0 3.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Lar_restr_allev PF14354.1 gi|313116871|ref|YP_004037995.1| - 0.0078 16.4 0.9 2.2 8.6 0.0 2.5 2 0 0 2 2 2 2 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|313116871|ref|YP_004037995.1| - 0.014 15.2 0.9 2.6 7.9 0.1 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|313116871|ref|YP_004037995.1| - 0.022 14.5 0.1 2.7 7.8 0.0 2.6 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_3 PF14369.1 gi|313116871|ref|YP_004037995.1| - 0.024 14.6 4.7 0.45 10.5 0.1 2.6 2 0 0 2 2 2 0 zinc-finger HTH_5 PF01022.15 gi|313116871|ref|YP_004037995.1| - 0.03 13.9 0.0 0.12 12.0 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-C4_Topoisom PF01396.14 gi|313116871|ref|YP_004037995.1| - 0.08 12.4 0.8 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Abi PF02517.11 gi|313116872|ref|YP_004037996.1| - 2.5e-18 66.0 6.0 2.5e-18 66.0 4.2 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity Colicin_V PF02674.11 gi|313116872|ref|YP_004037996.1| - 0.0072 16.1 15.6 0.017 14.9 2.3 2.5 2 1 0 2 2 2 2 Colicin V production protein DUF1129 PF06570.6 gi|313116872|ref|YP_004037996.1| - 0.039 13.2 0.6 0.039 13.2 0.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) BPD_transp_1 PF00528.17 gi|313116874|ref|YP_004037998.1| - 8.9e-22 77.4 17.6 8.9e-22 77.4 12.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313116875|ref|YP_004037999.1| - 1.2e-16 60.7 19.3 1.2e-16 60.7 13.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|313116876|ref|YP_004038000.1| - 5.3e-25 88.7 2.4 7.1e-25 88.2 1.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313116876|ref|YP_004038000.1| - 2.2e-20 73.6 3.3 3.6e-20 72.9 2.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Clr5 PF14420.1 gi|313116876|ref|YP_004038000.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Clr5 domain ABC_tran PF00005.22 gi|313116877|ref|YP_004038001.1| - 6e-33 114.0 0.0 9.2e-33 113.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313116877|ref|YP_004038001.1| - 1.8e-10 40.6 0.2 6e-10 38.9 0.1 1.9 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|313116877|ref|YP_004038001.1| - 8.3e-10 39.1 0.0 0.00022 21.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|313116877|ref|YP_004038001.1| - 7e-07 29.2 0.1 3.2e-06 27.1 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|313116877|ref|YP_004038001.1| - 0.00014 21.0 0.0 0.0097 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|313116877|ref|YP_004038001.1| - 0.00022 20.5 0.0 0.00049 19.3 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313116877|ref|YP_004038001.1| - 0.00035 20.9 0.1 0.00066 20.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313116877|ref|YP_004038001.1| - 0.0023 17.1 0.0 0.0041 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313116877|ref|YP_004038001.1| - 0.0044 17.0 0.0 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313116877|ref|YP_004038001.1| - 0.0057 16.7 0.0 0.025 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|313116877|ref|YP_004038001.1| - 0.012 15.0 0.3 0.1 11.9 0.2 2.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|313116877|ref|YP_004038001.1| - 0.013 15.6 0.1 0.064 13.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313116877|ref|YP_004038001.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Rad17 PF03215.10 gi|313116877|ref|YP_004038001.1| - 0.015 14.0 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|313116877|ref|YP_004038001.1| - 0.015 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|313116877|ref|YP_004038001.1| - 0.023 14.5 0.1 0.036 13.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313116877|ref|YP_004038001.1| - 0.034 13.2 0.0 0.075 12.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|313116877|ref|YP_004038001.1| - 0.11 12.2 0.1 0.9 9.2 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B GFO_IDH_MocA PF01408.17 gi|313116878|ref|YP_004038002.1| - 2.6e-21 76.3 0.1 4.2e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116878|ref|YP_004038002.1| - 9.9e-10 38.2 0.2 2.5e-09 36.9 0.2 1.8 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|313116878|ref|YP_004038002.1| - 3.2e-06 26.6 0.1 1.6e-05 24.3 0.0 2.1 1 1 1 2 2 2 1 Putative oxidoreductase C terminal CN_hydrolase PF00795.17 gi|313116878|ref|YP_004038002.1| - 0.0072 15.6 0.0 0.015 14.6 0.0 1.5 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase 53-BP1_Tudor PF09038.5 gi|313116878|ref|YP_004038002.1| - 0.07 12.9 0.0 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 Tumour suppressor p53-binding protein-1 Tudor CoA_binding PF02629.14 gi|313116878|ref|YP_004038002.1| - 0.14 12.6 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain AP_endonuc_2 PF01261.19 gi|313116879|ref|YP_004038003.1| - 6.6e-27 94.1 0.6 8.5e-27 93.8 0.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|313116879|ref|YP_004038003.1| - 0.042 13.3 0.5 0.36 10.4 0.0 2.7 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus MFS_1 PF07690.11 gi|313116880|ref|YP_004038004.1| - 1.9e-16 59.7 54.8 1.5e-15 56.8 28.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|313116880|ref|YP_004038004.1| - 5.5e-12 45.3 0.4 1.7e-11 43.7 0.3 1.9 1 0 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.14 gi|313116880|ref|YP_004038004.1| - 1.2e-11 43.8 5.1 1.2e-11 43.8 3.5 1.9 2 0 0 2 2 2 1 LacY proton/sugar symporter Nuc_H_symport PF03825.11 gi|313116880|ref|YP_004038004.1| - 5.8e-07 28.6 22.4 7.5e-07 28.2 15.5 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_2 PF13347.1 gi|313116880|ref|YP_004038004.1| - 1.3e-05 23.8 28.1 2.7e-05 22.7 6.8 2.9 2 2 0 2 2 2 2 MFS/sugar transport protein Ribonuc_L-PSP PF01042.16 gi|313116881|ref|YP_004038005.1| - 1.8e-40 137.4 0.1 2e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF1355 PF07090.6 gi|313116882|ref|YP_004038006.1| - 8.3e-35 119.7 0.0 1.1e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) ADH_N PF08240.7 gi|313116883|ref|YP_004038007.1| - 2.4e-31 107.7 0.3 4.3e-31 106.8 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|313116883|ref|YP_004038007.1| - 3.2e-25 88.1 0.3 4.9e-25 87.5 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ApbA PF02558.11 gi|313116883|ref|YP_004038007.1| - 0.024 14.1 0.2 0.046 13.1 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_C PF07479.9 gi|313116883|ref|YP_004038007.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NADH_4Fe-4S PF10589.4 gi|313116883|ref|YP_004038007.1| - 0.42 9.8 4.0 0.99 8.6 2.8 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PIG-L PF02585.12 gi|313116884|ref|YP_004038008.1| - 4e-32 111.4 0.8 7.1e-32 110.6 0.5 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Cas_Csx8 PF09657.5 gi|313116884|ref|YP_004038008.1| - 0.021 13.5 0.0 0.024 13.3 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein Csx8 (Cas_Csx8) Cdc6_C PF09079.6 gi|313116885|ref|YP_004038009.1| - 3.6e-17 61.8 0.1 1.1e-16 60.2 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|313116885|ref|YP_004038009.1| - 1.7e-12 47.5 0.1 6e-12 45.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313116885|ref|YP_004038009.1| - 4e-10 39.9 3.2 3.7e-09 36.8 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain PhoH PF02562.11 gi|313116885|ref|YP_004038009.1| - 7.7e-05 22.0 0.1 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.17 gi|313116885|ref|YP_004038009.1| - 0.00084 18.2 0.0 0.0017 17.3 0.0 1.5 2 0 0 2 2 2 1 NB-ARC domain AAA_5 PF07728.9 gi|313116885|ref|YP_004038009.1| - 0.0013 18.5 0.4 0.02 14.5 0.3 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|313116885|ref|YP_004038009.1| - 0.0015 18.1 0.0 0.0032 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|313116885|ref|YP_004038009.1| - 0.0022 18.0 0.0 0.0043 17.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|313116885|ref|YP_004038009.1| - 0.0028 16.6 0.0 0.0066 15.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DEAD PF00270.24 gi|313116885|ref|YP_004038009.1| - 0.0049 16.3 1.4 1.4 8.4 0.1 2.5 1 1 0 2 2 2 2 DEAD/DEAH box helicase AAA PF00004.24 gi|313116885|ref|YP_004038009.1| - 0.0079 16.3 1.8 0.1 12.7 1.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|313116885|ref|YP_004038009.1| - 0.0089 15.5 0.1 0.024 14.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_32 PF13654.1 gi|313116885|ref|YP_004038009.1| - 0.021 13.4 0.6 4.1 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|313116885|ref|YP_004038009.1| - 0.041 13.5 0.0 0.61 9.7 0.0 2.2 1 1 1 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|313116885|ref|YP_004038009.1| - 0.11 12.1 0.0 0.35 10.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|313116885|ref|YP_004038009.1| - 0.12 12.5 0.0 0.36 11.0 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|313116885|ref|YP_004038009.1| - 0.12 12.8 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein GFO_IDH_MocA PF01408.17 gi|313116886|ref|YP_004038010.1| - 8.6e-25 87.5 0.2 1.3e-24 86.9 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116886|ref|YP_004038010.1| - 5.1e-13 48.8 0.1 1.1e-12 47.7 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|313116886|ref|YP_004038010.1| - 1.4e-05 25.3 0.5 2.6e-05 24.4 0.1 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|313116886|ref|YP_004038010.1| - 0.0032 17.3 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|313116886|ref|YP_004038010.1| - 0.0095 16.3 0.1 0.018 15.3 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|313116886|ref|YP_004038010.1| - 0.021 15.2 0.0 0.067 13.6 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|313116886|ref|YP_004038010.1| - 0.027 13.2 0.0 0.044 12.5 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|313116886|ref|YP_004038010.1| - 0.066 13.0 0.1 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MDMPI_C PF07398.6 gi|313116886|ref|YP_004038010.1| - 0.13 12.8 2.7 0.41 11.2 0.3 2.6 2 0 0 2 2 2 0 MDMPI C-terminal domain Saccharop_dh PF03435.13 gi|313116886|ref|YP_004038010.1| - 0.14 11.0 0.1 0.22 10.4 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|313116887|ref|YP_004038011.1| - 5.5e-18 65.6 0.3 1.2e-17 64.5 0.2 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116887|ref|YP_004038011.1| - 3.2e-11 43.0 0.1 7.1e-11 41.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.17 gi|313116888|ref|YP_004038012.1| - 1.7e-13 51.1 0.0 3.4e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116888|ref|YP_004038012.1| - 6.2e-08 32.4 0.0 1.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.17 gi|313116889|ref|YP_004038013.1| - 4.3e-07 30.4 0.0 6.9e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313116889|ref|YP_004038013.1| - 0.00028 20.6 0.0 0.00062 19.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain SelA PF03841.8 gi|313116890|ref|YP_004038014.1| - 4.4e-10 38.8 0.0 1.7e-07 30.3 0.0 3.2 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|313116890|ref|YP_004038014.1| - 2.9e-09 36.1 0.0 5.1e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|313116890|ref|YP_004038014.1| - 5.3e-07 28.9 3.2 1.6e-06 27.4 1.7 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|313116890|ref|YP_004038014.1| - 3e-05 22.5 1.7 0.00035 18.9 1.2 2.0 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|313116890|ref|YP_004038014.1| - 5.4e-05 22.4 0.3 0.00016 20.8 0.1 1.9 1 1 1 2 2 2 1 Beta-eliminating lyase NAD_binding_3 PF03447.11 gi|313116890|ref|YP_004038014.1| - 0.018 15.4 0.1 0.16 12.3 0.0 2.3 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.19 gi|313116891|ref|YP_004038015.1| - 3e-25 88.7 0.5 3.3e-23 82.0 0.1 2.0 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel NYN PF01936.13 gi|313116891|ref|YP_004038015.1| - 0.083 13.1 0.0 5.3 7.3 0.0 2.6 2 1 0 2 2 2 0 NYN domain GlcNAc_2-epim PF07221.6 gi|313116892|ref|YP_004038016.1| - 1.7e-93 313.3 7.2 2.3e-93 312.9 5.0 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.9 gi|313116892|ref|YP_004038016.1| - 1.9e-06 27.5 2.2 0.00014 21.4 0.2 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.8 gi|313116892|ref|YP_004038016.1| - 0.0036 16.6 1.1 1.6 8.0 0.0 2.6 1 1 1 2 2 2 2 D-glucuronyl C5-epimerase C-terminus DUF1680 PF07944.7 gi|313116892|ref|YP_004038016.1| - 0.0042 15.4 0.5 0.37 8.9 0.0 2.2 1 1 0 2 2 2 2 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_47 PF01532.15 gi|313116892|ref|YP_004038016.1| - 0.033 12.8 0.0 4.5 5.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 47 DUF35_N PF12172.3 gi|313116893|ref|YP_004038017.1| - 2.4e-07 30.4 2.2 4.6e-07 29.5 1.5 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|313116893|ref|YP_004038017.1| - 2.8e-07 30.6 1.4 1e-06 28.8 1.0 2.1 1 0 0 1 1 1 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|313116893|ref|YP_004038017.1| - 0.00088 19.2 0.2 0.0027 17.6 0.2 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Chal_sti_synt_N PF00195.14 gi|313116893|ref|YP_004038017.1| - 0.0054 16.0 0.1 0.012 14.8 0.0 1.6 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain ACP_syn_III PF08545.5 gi|313116893|ref|YP_004038017.1| - 0.23 11.1 3.0 0.38 10.4 0.8 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|313116894|ref|YP_004038018.1| - 9.3e-14 51.0 0.5 5.4e-13 48.5 0.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|313116894|ref|YP_004038018.1| - 1.2e-09 37.6 0.2 4.4e-09 35.8 0.0 2.1 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|313116894|ref|YP_004038018.1| - 2.9e-06 26.9 2.7 3.3e-06 26.7 0.9 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|313116894|ref|YP_004038018.1| - 0.00021 20.8 0.9 0.06 13.0 0.1 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peripla_BP_2 PF01497.13 gi|313116895|ref|YP_004038019.1| - 1.3e-16 60.4 0.1 2.1e-16 59.7 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313116895|ref|YP_004038019.1| - 0.0055 16.6 4.7 0.01 15.7 3.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.4 gi|313116896|ref|YP_004038020.1| - 0.44 10.6 2.6 0.83 9.8 1.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_3 PF00933.16 gi|313116897|ref|YP_004038021.1| - 1.5e-76 257.2 0.0 2e-76 256.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|313116897|ref|YP_004038021.1| - 2.3e-60 203.9 0.0 3.2e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|313116897|ref|YP_004038021.1| - 5e-11 42.3 1.3 5.5e-11 42.2 0.1 1.7 2 0 0 2 2 2 1 Fibronectin type III-like domain CARDB PF07705.6 gi|313116897|ref|YP_004038021.1| - 0.027 14.5 0.1 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 CARDB TrkA_C PF02080.16 gi|313116898|ref|YP_004038022.1| - 4e-12 45.5 0.5 7.7e-12 44.6 0.4 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|313116898|ref|YP_004038022.1| - 3.8e-10 38.9 0.0 7.5e-10 38.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313116898|ref|YP_004038022.1| - 2.1e-08 33.5 0.1 5.1e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313116898|ref|YP_004038022.1| - 5.9e-05 22.6 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313116898|ref|YP_004038022.1| - 0.003 17.1 0.1 0.009 15.6 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|313116898|ref|YP_004038022.1| - 0.0046 16.4 0.0 0.012 15.0 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|313116898|ref|YP_004038022.1| - 0.0068 16.1 0.0 0.018 14.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|313116898|ref|YP_004038022.1| - 0.026 13.9 0.0 0.071 12.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.1 gi|313116898|ref|YP_004038022.1| - 0.036 14.0 0.3 0.094 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|313116898|ref|YP_004038022.1| - 0.045 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|313116898|ref|YP_004038022.1| - 0.048 13.4 0.1 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|313116898|ref|YP_004038022.1| - 0.088 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|313116898|ref|YP_004038022.1| - 0.089 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF2250 PF10007.4 gi|313116898|ref|YP_004038022.1| - 0.094 12.6 0.1 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TrkA_N PF02254.13 gi|313116899|ref|YP_004038023.1| - 2.1e-25 88.9 0.9 3.8e-25 88.1 0.6 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|313116899|ref|YP_004038023.1| - 6.2e-14 51.3 0.8 2.6e-13 49.3 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain ADH_zinc_N PF00107.21 gi|313116899|ref|YP_004038023.1| - 9.5e-05 21.9 0.1 0.0041 16.6 0.3 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|313116899|ref|YP_004038023.1| - 0.00035 20.6 1.3 0.00083 19.4 0.3 1.9 2 0 0 2 2 2 1 NADH(P)-binding XdhC_C PF13478.1 gi|313116899|ref|YP_004038023.1| - 0.00068 19.9 0.1 0.00095 19.4 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Peripla_BP_3 PF13377.1 gi|313116899|ref|YP_004038023.1| - 0.0014 18.6 1.7 0.0053 16.7 0.1 2.0 2 0 0 2 2 2 1 Periplasmic binding protein-like domain UDPG_MGDP_dh_N PF03721.9 gi|313116899|ref|YP_004038023.1| - 0.0016 17.8 0.2 0.0023 17.3 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|313116899|ref|YP_004038023.1| - 0.0022 17.6 0.4 0.0031 17.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|313116899|ref|YP_004038023.1| - 0.0023 17.0 0.4 0.0027 16.7 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|313116899|ref|YP_004038023.1| - 0.0076 16.6 0.9 0.017 15.5 0.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|313116899|ref|YP_004038023.1| - 0.013 15.7 0.3 0.027 14.7 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|313116899|ref|YP_004038023.1| - 0.013 15.3 0.1 0.035 13.9 0.1 1.7 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|313116899|ref|YP_004038023.1| - 0.078 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|313116899|ref|YP_004038023.1| - 0.095 11.9 0.2 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family ThiF PF00899.16 gi|313116899|ref|YP_004038023.1| - 0.32 10.7 4.0 4.1 7.2 0.5 2.3 1 1 1 2 2 2 0 ThiF family CENP-Q PF13094.1 gi|313116900|ref|YP_004038024.1| - 0.0082 16.1 2.0 0.01 15.8 1.4 1.1 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit DUF2072 PF09845.4 gi|313116900|ref|YP_004038024.1| - 4 7.3 6.1 2.4 8.0 2.3 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) CitMHS PF03600.11 gi|313116901|ref|YP_004038025.1| - 2.1e-44 151.5 0.0 1.3e-38 132.4 0.0 1.7 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|313116901|ref|YP_004038025.1| - 8.3e-23 80.9 37.6 4.5e-15 55.4 13.0 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|313116901|ref|YP_004038025.1| - 7.5e-21 73.5 2.9 2.8e-13 49.2 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain DUF883 PF05957.8 gi|313116903|ref|YP_004038027.1| - 0.055 13.8 1.7 0.34 11.3 0.0 2.3 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) CBS PF00571.23 gi|313116905|ref|YP_004038029.1| - 2.6e-27 94.3 0.9 1.8e-15 56.4 0.0 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|313116905|ref|YP_004038029.1| - 2.3e-19 69.1 11.1 3.3e-14 52.2 3.0 2.9 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|313116905|ref|YP_004038029.1| - 7.4e-06 25.4 3.2 7.4e-06 25.4 2.2 2.3 2 1 0 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|313116905|ref|YP_004038029.1| - 0.025 14.6 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily Peptidase_M64 PF09471.5 gi|313116905|ref|YP_004038029.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 IgA Peptidase M64 CBS PF00571.23 gi|313116908|ref|YP_004038032.1| - 3.8e-10 39.3 0.6 8.3e-10 38.3 0.4 1.6 1 0 0 1 1 1 1 CBS domain DUF1111 PF06537.6 gi|313116908|ref|YP_004038032.1| - 0.076 11.2 0.1 0.098 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1111) DUF2178 PF09946.4 gi|313116910|ref|YP_004038034.1| - 3.8e-10 39.4 0.3 5.6e-10 38.9 0.2 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) PTS_EIIC_2 PF13303.1 gi|313116910|ref|YP_004038034.1| - 0.00088 18.2 0.8 0.001 18.0 0.6 1.0 1 0 0 1 1 1 1 Phosphotransferase system, EIIC DUF4131 PF13567.1 gi|313116910|ref|YP_004038034.1| - 1.2 8.5 8.4 20 4.5 5.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) HTH_3 PF01381.17 gi|313116911|ref|YP_004038035.1| - 8.5e-16 57.5 0.0 9.3e-16 57.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|313116911|ref|YP_004038035.1| - 1.6e-11 44.0 0.0 1.6e-11 44.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313116911|ref|YP_004038035.1| - 7.4e-10 38.8 0.2 8e-10 38.7 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|313116911|ref|YP_004038035.1| - 7.7e-07 29.2 0.0 8.6e-07 29.0 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|313116911|ref|YP_004038035.1| - 0.00023 20.7 0.2 0.00027 20.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|313116911|ref|YP_004038035.1| - 0.014 15.2 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|313116911|ref|YP_004038035.1| - 0.02 14.5 0.1 0.032 13.8 0.1 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|313116911|ref|YP_004038035.1| - 0.06 12.6 0.1 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|313116911|ref|YP_004038035.1| - 0.09 12.5 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.10 gi|313116911|ref|YP_004038035.1| - 0.096 12.5 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|313116911|ref|YP_004038035.1| - 0.097 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1841 PF08897.6 gi|313116911|ref|YP_004038035.1| - 0.1 12.3 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) HTH_20 PF12840.2 gi|313116912|ref|YP_004038036.1| - 7.4e-06 25.6 0.0 1.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain ADK_lid PF05191.9 gi|313116912|ref|YP_004038036.1| - 0.061 12.9 2.7 4.3 7.0 0.1 3.5 3 0 0 3 3 3 0 Adenylate kinase, active site lid Secretin_N_2 PF07655.8 gi|313116912|ref|YP_004038036.1| - 0.87 10.0 6.2 0.85 10.0 1.2 2.1 2 0 0 2 2 2 0 Secretin N-terminal domain MarR_2 PF12802.2 gi|313116915|ref|YP_004038039.1| - 1.1e-15 57.0 2.0 5.9e-09 35.4 0.7 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|313116915|ref|YP_004038039.1| - 2.2e-09 36.8 0.2 0.0011 18.6 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313116915|ref|YP_004038039.1| - 8.3e-09 35.0 0.0 0.00082 19.0 0.0 2.5 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.15 gi|313116915|ref|YP_004038039.1| - 1.3e-08 34.8 0.0 0.0057 16.7 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_24 PF13412.1 gi|313116915|ref|YP_004038039.1| - 5.3e-08 32.1 0.1 0.0059 15.9 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|313116915|ref|YP_004038039.1| - 1.2e-07 31.9 0.6 2.8e-05 24.3 0.3 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313116915|ref|YP_004038039.1| - 2.6e-07 30.0 0.2 0.02 14.4 0.1 2.8 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|313116915|ref|YP_004038039.1| - 6.6e-07 29.4 0.5 0.039 14.0 0.0 2.4 1 1 1 2 2 2 2 Winged helix-turn helix HTH_20 PF12840.2 gi|313116915|ref|YP_004038039.1| - 1.9e-06 27.5 0.3 0.027 14.2 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|313116915|ref|YP_004038039.1| - 3.6e-06 26.4 0.1 0.0062 16.1 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_38 PF13936.1 gi|313116915|ref|YP_004038039.1| - 4.3e-05 22.9 0.0 0.37 10.3 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain GntR PF00392.16 gi|313116915|ref|YP_004038039.1| - 0.0003 20.1 0.1 0.91 9.0 0.0 2.7 3 0 0 3 3 2 2 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|313116915|ref|YP_004038039.1| - 0.00053 19.5 0.0 0.63 9.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|313116915|ref|YP_004038039.1| - 0.00077 19.2 0.0 0.29 10.9 0.0 2.6 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|313116915|ref|YP_004038039.1| - 0.0018 18.2 0.1 0.24 11.4 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|313116915|ref|YP_004038039.1| - 0.0018 18.3 0.0 2.2 8.3 0.0 2.4 1 1 1 2 2 2 2 Penicillinase repressor Crp PF00325.15 gi|313116915|ref|YP_004038039.1| - 0.0025 17.2 0.7 0.0092 15.4 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_41 PF14502.1 gi|313116915|ref|YP_004038039.1| - 0.0026 17.3 0.0 0.019 14.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain DUF746 PF05344.6 gi|313116915|ref|YP_004038039.1| - 0.0043 16.5 0.0 0.012 15.1 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|313116915|ref|YP_004038039.1| - 0.015 15.5 0.1 0.04 14.2 0.0 1.7 1 1 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_36 PF13730.1 gi|313116915|ref|YP_004038039.1| - 0.016 15.3 0.0 0.85 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|313116915|ref|YP_004038039.1| - 0.02 15.2 0.0 0.051 13.9 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal Phage_rep_org_N PF09681.5 gi|313116915|ref|YP_004038039.1| - 0.037 13.5 0.0 5 6.7 0.0 2.3 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|313116915|ref|YP_004038039.1| - 0.092 12.4 0.1 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|313116915|ref|YP_004038039.1| - 0.11 11.8 0.1 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2204 PF09970.4 gi|313116916|ref|YP_004038040.1| - 0.0034 16.8 0.4 0.32 10.4 0.0 2.3 2 0 0 2 2 2 2 Nucleotidyl transferase of unknown function (DUF2204) HTH_20 PF12840.2 gi|313116916|ref|YP_004038040.1| - 0.024 14.4 0.2 0.068 12.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|313116916|ref|YP_004038040.1| - 0.033 14.0 0.1 0.068 13.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 IF2_N PF04760.10 gi|313116916|ref|YP_004038040.1| - 0.09 12.4 0.0 0.26 10.9 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region DUF4423 PF14394.1 gi|313116916|ref|YP_004038040.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PqqD PF05402.7 gi|313116916|ref|YP_004038040.1| - 0.13 12.3 1.1 2.9 7.9 0.1 2.7 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) SWIM PF04434.12 gi|313116917|ref|YP_004038041.1| - 0.0069 15.8 0.6 0.02 14.3 0.4 1.8 1 1 0 1 1 1 1 SWIM zinc finger ABC2_membrane_2 PF12679.2 gi|313116919|ref|YP_004038043.1| - 8.8e-13 47.7 10.1 1.1e-12 47.3 7.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313116919|ref|YP_004038043.1| - 7e-10 38.4 8.7 1.2e-09 37.7 5.5 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313116919|ref|YP_004038043.1| - 1.2 8.0 11.8 1.5 7.7 8.2 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313116920|ref|YP_004038044.1| - 4e-26 91.9 0.0 1.1e-25 90.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313116920|ref|YP_004038044.1| - 1e-15 58.4 0.0 2e-09 37.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|313116920|ref|YP_004038044.1| - 3.5e-06 26.4 0.0 0.07 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313116920|ref|YP_004038044.1| - 8.3e-06 25.2 0.1 1.6e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|313116920|ref|YP_004038044.1| - 0.00021 20.8 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_30 PF13604.1 gi|313116920|ref|YP_004038044.1| - 0.0014 18.2 2.1 0.015 14.8 0.2 2.6 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|313116920|ref|YP_004038044.1| - 0.0044 17.3 0.1 0.0069 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|313116920|ref|YP_004038044.1| - 0.0063 16.4 0.1 0.83 9.6 0.0 2.8 2 1 0 3 3 3 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|313116920|ref|YP_004038044.1| - 0.0084 14.9 0.3 0.014 14.1 0.2 1.3 1 0 0 1 1 1 1 ArgK protein DUF258 PF03193.11 gi|313116920|ref|YP_004038044.1| - 0.056 12.6 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313116920|ref|YP_004038044.1| - 0.057 12.8 1.0 0.23 10.8 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|313116920|ref|YP_004038044.1| - 0.085 11.8 0.0 4.4 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|313116920|ref|YP_004038044.1| - 0.11 12.3 0.2 0.34 10.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313116920|ref|YP_004038044.1| - 0.15 12.2 0.4 2.8 8.0 0.3 2.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|313116920|ref|YP_004038044.1| - 0.17 11.3 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|313116920|ref|YP_004038044.1| - 0.19 11.6 2.5 0.91 9.4 1.1 2.3 1 1 1 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|313116921|ref|YP_004038045.1| - 1e-17 63.9 6.9 1.6e-17 63.2 4.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313116921|ref|YP_004038045.1| - 3.8e-11 42.5 3.0 4.7e-11 42.2 2.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313116921|ref|YP_004038045.1| - 1e-06 28.0 1.9 1.2e-06 27.8 1.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313116921|ref|YP_004038045.1| - 0.014 14.6 0.1 0.023 13.9 0.1 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|313116921|ref|YP_004038045.1| - 0.8 8.8 7.9 1.3 8.1 5.5 1.4 1 1 0 1 1 1 0 ABC-2 type transporter TrmB PF01978.14 gi|313116923|ref|YP_004038047.1| - 1.9e-09 37.1 0.2 5e-09 35.7 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313116923|ref|YP_004038047.1| - 1.8e-06 27.6 0.1 5.6e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313116923|ref|YP_004038047.1| - 6.4e-05 22.2 0.0 0.00068 18.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313116923|ref|YP_004038047.1| - 0.00046 19.7 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RP-C PF03428.8 gi|313116923|ref|YP_004038047.1| - 0.0072 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_IclR PF09339.5 gi|313116923|ref|YP_004038047.1| - 0.011 15.2 0.1 0.11 12.1 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313116923|ref|YP_004038047.1| - 0.017 14.7 0.4 0.085 12.5 0.0 2.2 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.11 gi|313116923|ref|YP_004038047.1| - 0.031 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor F-112 PF09645.5 gi|313116923|ref|YP_004038047.1| - 0.043 13.7 0.0 9.3 6.1 0.0 2.2 2 0 0 2 2 2 0 F-112 protein HTH_29 PF13551.1 gi|313116923|ref|YP_004038047.1| - 0.079 13.1 0.1 0.2 11.8 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn helix ADH_zinc_N_2 PF13602.1 gi|313116923|ref|YP_004038047.1| - 0.16 12.9 1.7 0.54 11.1 1.1 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase FUR PF01475.14 gi|313116925|ref|YP_004038049.1| - 0.0031 17.4 0.1 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Tnp_Tc3_2 PF01498.13 gi|313116925|ref|YP_004038049.1| - 0.012 15.6 0.1 0.022 14.8 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.7 gi|313116925|ref|YP_004038049.1| - 0.022 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain Tic20 PF09685.5 gi|313116926|ref|YP_004038050.1| - 3.2e-16 59.2 4.4 3.2e-16 59.2 3.1 2.8 2 1 0 2 2 2 1 Tic20-like protein Hydrolase PF00702.21 gi|313116928|ref|YP_004038052.1| - 6.7e-55 186.8 6.0 6.7e-55 186.8 4.2 1.9 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|313116928|ref|YP_004038052.1| - 9.5e-51 172.0 0.2 1.6e-50 171.2 0.1 1.4 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.21 gi|313116928|ref|YP_004038052.1| - 7.5e-27 93.2 0.4 4e-12 46.1 0.0 3.2 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|313116928|ref|YP_004038052.1| - 2.7e-18 66.8 0.0 1.6e-17 64.2 0.0 2.3 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|313116928|ref|YP_004038052.1| - 1.5e-06 27.9 3.3 0.0023 17.5 0.5 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|313116928|ref|YP_004038052.1| - 0.00096 19.0 1.6 0.0078 16.0 0.0 3.2 5 0 0 5 5 5 1 Haloacid dehalogenase-like hydrolase Plug_translocon PF10559.4 gi|313116928|ref|YP_004038052.1| - 0.088 12.3 0.6 0.2 11.2 0.4 1.6 1 0 0 1 1 1 0 Plug domain of Sec61p Thioredoxin_3 PF13192.1 gi|313116928|ref|YP_004038052.1| - 0.12 12.2 1.0 21 4.9 0.1 3.0 3 0 0 3 3 3 0 Thioredoxin domain MFP2b PF12150.3 gi|313116928|ref|YP_004038052.1| - 0.12 11.0 0.0 0.22 10.2 0.0 1.3 1 0 0 1 1 1 0 Cytosolic motility protein Amidohydro_4 PF13147.1 gi|313116929|ref|YP_004038053.1| - 8.6e-21 75.1 13.5 2e-20 73.9 9.4 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|313116929|ref|YP_004038053.1| - 6.3e-15 55.6 0.3 5.1e-11 42.8 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313116929|ref|YP_004038053.1| - 2.9e-12 46.1 0.5 6.9e-12 45.0 0.4 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313116929|ref|YP_004038053.1| - 1.7e-09 37.4 5.6 1.5e-06 27.7 1.2 3.4 2 1 0 2 2 2 2 Amidohydrolase family DUF3188 PF11384.3 gi|313116930|ref|YP_004038054.1| - 0.063 12.8 0.1 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) Peptidase_S49 PF01343.13 gi|313116931|ref|YP_004038055.1| - 2.6e-22 79.2 1.3 7.5e-13 48.5 0.8 2.5 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|313116931|ref|YP_004038055.1| - 4.4e-09 36.2 0.2 2.3e-08 33.8 0.1 2.1 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|313116931|ref|YP_004038055.1| - 2.1e-05 23.4 0.1 3e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH PF00378.15 gi|313116931|ref|YP_004038055.1| - 0.00053 19.1 1.5 0.067 12.3 0.1 2.9 3 1 1 4 4 4 2 Enoyl-CoA hydratase/isomerase family Ligase_CoA PF00549.14 gi|313116931|ref|YP_004038055.1| - 0.0034 16.9 0.1 0.012 15.2 0.1 1.9 2 0 0 2 2 2 1 CoA-ligase Metal_resist PF13801.1 gi|313116931|ref|YP_004038055.1| - 0.007 16.3 0.1 0.33 10.9 0.0 2.4 2 0 0 2 2 2 1 Heavy-metal resistance OKR_DC_1_N PF03709.10 gi|313116931|ref|YP_004038055.1| - 0.037 14.0 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Abhydrolase_5 PF12695.2 gi|313116932|ref|YP_004038056.1| - 0.00012 21.8 0.2 0.0002 21.1 0.2 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF4350 PF14258.1 gi|313116932|ref|YP_004038056.1| - 0.00019 21.5 0.1 0.001 19.2 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|313116932|ref|YP_004038056.1| - 0.00057 19.4 0.0 0.00076 19.0 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system HATPase_c PF02518.21 gi|313116933|ref|YP_004038057.1| - 2.9e-16 59.1 0.1 5.6e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313116933|ref|YP_004038057.1| - 5.5e-09 36.0 0.6 4.3e-08 33.1 0.1 2.6 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|313116933|ref|YP_004038057.1| - 3e-08 33.9 0.7 6e-07 29.7 0.1 3.0 2 2 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|313116933|ref|YP_004038057.1| - 1.3e-06 28.2 0.0 2.7e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|313116933|ref|YP_004038057.1| - 8.1e-06 25.5 0.2 4.6e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|313116933|ref|YP_004038057.1| - 0.00015 21.5 0.1 0.00099 18.8 0.1 2.4 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|313116933|ref|YP_004038057.1| - 0.0033 17.1 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|313116933|ref|YP_004038057.1| - 0.0081 16.1 0.5 0.87 9.6 0.0 2.9 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|313116933|ref|YP_004038057.1| - 0.019 15.2 0.1 0.4 10.9 0.1 2.5 1 1 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|313116933|ref|YP_004038057.1| - 0.025 14.2 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UbiA PF01040.13 gi|313116934|ref|YP_004038058.1| - 2.4e-19 69.6 23.7 3.1e-19 69.2 16.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3353 PF11833.3 gi|313116934|ref|YP_004038058.1| - 7.3 6.0 7.0 2.5 7.4 2.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) HTH_10 PF04967.7 gi|313116935|ref|YP_004038059.1| - 6.5e-19 67.2 0.0 1e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.7 gi|313116935|ref|YP_004038059.1| - 0.00021 20.8 0.1 0.0039 16.8 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|313116935|ref|YP_004038059.1| - 0.0015 17.9 0.0 0.0032 16.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313116935|ref|YP_004038059.1| - 0.0067 16.0 0.1 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|313116935|ref|YP_004038059.1| - 0.008 15.4 0.1 0.016 14.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|313116935|ref|YP_004038059.1| - 0.012 14.8 0.2 0.049 12.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|313116935|ref|YP_004038059.1| - 0.05 13.0 0.3 0.14 11.5 0.0 1.9 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.17 gi|313116935|ref|YP_004038059.1| - 0.058 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|313116935|ref|YP_004038059.1| - 0.058 13.3 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|313116935|ref|YP_004038059.1| - 0.087 12.4 0.1 0.39 10.2 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|313116935|ref|YP_004038059.1| - 0.096 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|313116935|ref|YP_004038059.1| - 0.12 12.0 0.0 1.6 8.3 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|313116935|ref|YP_004038059.1| - 0.15 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain p450 PF00067.17 gi|313116936|ref|YP_004038060.1| - 4.3e-96 322.2 0.0 4.8e-96 322.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Peptidase_S8 PF00082.17 gi|313116938|ref|YP_004038062.1| - 1.8e-59 201.2 8.4 2.5e-59 200.7 5.8 1.2 1 0 0 1 1 1 1 Subtilase family PadR PF03551.9 gi|313116939|ref|YP_004038063.1| - 1.3e-14 53.7 0.9 1.5e-14 53.5 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313116939|ref|YP_004038063.1| - 2.5e-06 27.7 0.0 2.9e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313116939|ref|YP_004038063.1| - 0.00032 20.6 0.0 0.00043 20.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|313116939|ref|YP_004038063.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) USP7_ICP0_bdg PF12436.3 gi|313116940|ref|YP_004038064.1| - 0.093 11.9 0.0 0.093 11.9 0.0 1.0 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 DUF2850 PF11012.3 gi|313116941|ref|YP_004038065.1| - 0.16 12.2 0.7 6.8 6.9 0.0 3.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2850) HxlR PF01638.12 gi|313116942|ref|YP_004038066.1| - 1.2e-27 95.3 0.0 1.5e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313116942|ref|YP_004038066.1| - 0.0029 17.3 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PAS_9 PF13426.1 gi|313116944|ref|YP_004038068.1| - 3.5e-42 142.9 0.1 1e-16 61.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|313116944|ref|YP_004038068.1| - 2.5e-33 114.2 0.0 9e-10 38.3 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|313116944|ref|YP_004038068.1| - 8.3e-24 82.5 0.0 7.3e-08 31.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain HTH_10 PF04967.7 gi|313116944|ref|YP_004038068.1| - 5e-22 77.2 0.0 1.6e-21 75.6 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|313116944|ref|YP_004038068.1| - 8.3e-21 74.0 1.1 2.2e-06 27.6 0.0 4.3 3 1 0 3 3 3 3 PAS fold GAF_2 PF13185.1 gi|313116944|ref|YP_004038068.1| - 5.9e-20 72.2 1.1 1.4e-10 41.8 0.2 2.8 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|313116944|ref|YP_004038068.1| - 7.2e-19 68.1 0.4 4.5e-09 36.4 0.1 2.7 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|313116944|ref|YP_004038068.1| - 5e-16 58.5 0.0 3.2e-05 23.9 0.0 4.6 3 1 1 4 4 4 3 PAS fold GAF PF01590.21 gi|313116944|ref|YP_004038068.1| - 1.1e-06 28.8 0.3 0.0021 18.1 0.1 2.7 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.2 gi|313116944|ref|YP_004038068.1| - 0.00042 20.3 0.0 2.2 8.3 0.0 4.0 4 0 0 4 4 4 1 PAS fold PAS_11 PF14598.1 gi|313116944|ref|YP_004038068.1| - 0.00091 19.1 0.0 0.78 9.7 0.0 3.4 3 0 0 3 3 3 1 PAS domain Sigma70_r4_2 PF08281.7 gi|313116944|ref|YP_004038068.1| - 0.0027 17.1 0.0 0.0081 15.5 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 ATP-cone PF03477.11 gi|313116944|ref|YP_004038068.1| - 0.011 16.1 0.5 4.4 7.7 0.0 3.2 2 0 0 2 2 2 0 ATP cone domain DUF134 PF02001.11 gi|313116944|ref|YP_004038068.1| - 0.027 14.3 0.0 0.11 12.4 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function DUF134 GerE PF00196.14 gi|313116944|ref|YP_004038068.1| - 0.048 12.9 0.0 0.13 11.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family CBS PF00571.23 gi|313116945|ref|YP_004038069.1| - 7.4e-23 80.0 0.4 5.3e-11 42.1 0.0 2.5 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.14 gi|313116945|ref|YP_004038069.1| - 2.6e-21 75.2 0.0 5.2e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313116945|ref|YP_004038069.1| - 1.3e-07 31.4 0.0 4e-07 29.8 0.0 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|313116945|ref|YP_004038069.1| - 0.017 15.6 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 Thioesterase-like superfamily 4HBT PF03061.17 gi|313116945|ref|YP_004038069.1| - 0.098 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Thioesterase superfamily Ribosomal_L18_c PF14204.1 gi|313116945|ref|YP_004038069.1| - 0.13 12.8 0.0 0.3 11.6 0.0 1.6 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region Copper-bind PF00127.15 gi|313116947|ref|YP_004038071.1| - 1.6e-08 34.6 0.1 2.2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313116947|ref|YP_004038071.1| - 2.4e-07 30.5 0.0 1e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.10 gi|313116947|ref|YP_004038071.1| - 3.8e-05 23.3 0.3 6.7e-05 22.6 0.2 1.5 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|313116947|ref|YP_004038071.1| - 0.0013 18.2 0.1 0.0031 17.0 0.1 1.8 1 1 0 1 1 1 1 Multicopper oxidase SoxE PF06525.6 gi|313116947|ref|YP_004038071.1| - 0.0096 15.2 0.7 0.033 13.4 0.5 2.1 1 1 0 1 1 1 1 Sulfocyanin (SoxE) COX2 PF00116.15 gi|313116947|ref|YP_004038071.1| - 0.064 13.0 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain TALPID3 PF15324.1 gi|313116947|ref|YP_004038071.1| - 4.6 4.4 7.0 5.6 4.1 4.9 1.1 1 0 0 1 1 1 0 Hedgehog signalling target FecR PF04773.8 gi|313116948|ref|YP_004038072.1| - 0.18 12.0 7.4 0.29 11.3 0.2 4.2 3 3 2 5 5 5 0 FecR protein HtaA PF04213.8 gi|313116948|ref|YP_004038072.1| - 7.3 6.7 24.5 0.43 10.7 1.7 4.2 1 1 3 4 4 4 0 Htaa DUF2218 PF09981.4 gi|313116949|ref|YP_004038073.1| - 0.069 13.3 2.9 4.5 7.5 0.1 3.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2218) zf-Di19 PF05605.7 gi|313116950|ref|YP_004038074.1| - 0.045 13.8 0.9 0.1 12.7 0.5 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TrmB PF01978.14 gi|313116951|ref|YP_004038075.1| - 2.3e-05 24.0 0.0 4.3e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313116951|ref|YP_004038075.1| - 0.00011 21.8 0.0 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|313116951|ref|YP_004038075.1| - 0.00023 20.8 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|313116951|ref|YP_004038075.1| - 0.00035 20.1 0.1 0.00074 19.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|313116951|ref|YP_004038075.1| - 0.00051 19.8 0.0 0.0014 18.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313116951|ref|YP_004038075.1| - 0.00058 19.3 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|313116951|ref|YP_004038075.1| - 0.0018 17.8 0.1 0.0043 16.6 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|313116951|ref|YP_004038075.1| - 0.0037 16.6 0.1 0.008 15.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|313116951|ref|YP_004038075.1| - 0.0042 16.4 0.0 0.0099 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|313116951|ref|YP_004038075.1| - 0.0073 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313116951|ref|YP_004038075.1| - 0.019 15.3 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313116951|ref|YP_004038075.1| - 0.031 13.9 0.1 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|313116951|ref|YP_004038075.1| - 0.052 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|313116951|ref|YP_004038075.1| - 0.07 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_29 PF13551.1 gi|313116951|ref|YP_004038075.1| - 0.07 13.2 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|313116951|ref|YP_004038075.1| - 0.077 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|313116951|ref|YP_004038075.1| - 0.093 12.7 0.9 0.49 10.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain GM_CSF PF01109.12 gi|313116952|ref|YP_004038076.1| - 0.061 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor UbiA PF01040.13 gi|313116952|ref|YP_004038076.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF2345 PF10106.4 gi|313116953|ref|YP_004038077.1| - 0.043 13.4 0.0 6.7 6.2 0.0 3.0 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2345) HxlR PF01638.12 gi|313116957|ref|YP_004038081.1| - 3.7e-21 74.5 0.0 5.7e-21 73.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313116957|ref|YP_004038081.1| - 0.056 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|313116959|ref|YP_004038083.1| - 9.9e-27 92.4 0.0 1.2e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313116959|ref|YP_004038083.1| - 0.056 13.2 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|313116959|ref|YP_004038083.1| - 0.072 12.8 0.0 0.094 12.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDE_Tnp_IS240 PF13610.1 gi|313116960|ref|YP_004038084.1| - 7e-28 97.3 0.0 1.3e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313116960|ref|YP_004038084.1| - 6.9e-08 31.9 0.6 6.9e-08 31.9 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313116960|ref|YP_004038084.1| - 0.004 16.4 0.1 0.008 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313116960|ref|YP_004038084.1| - 0.0062 16.6 0.1 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313116960|ref|YP_004038084.1| - 0.031 14.2 0.0 0.073 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313116960|ref|YP_004038084.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease Citrate_synt PF00285.16 gi|313116961|ref|YP_004038085.1| - 1.3e-111 372.7 0.0 1.5e-111 372.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Cu-oxidase_3 PF07732.10 gi|313116962|ref|YP_004038086.1| - 1.8e-09 37.3 0.1 3.9e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Multicopper oxidase Copper-bind PF00127.15 gi|313116962|ref|YP_004038086.1| - 2e-06 27.9 0.4 1.8e-05 24.9 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.9 gi|313116962|ref|YP_004038086.1| - 3.3e-05 23.4 0.3 0.00048 19.6 0.2 2.6 2 1 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|313116962|ref|YP_004038086.1| - 0.005 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.15 gi|313116963|ref|YP_004038087.1| - 2.1e-47 161.7 47.5 4.3e-47 160.7 32.9 1.5 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF3353 PF11833.3 gi|313116964|ref|YP_004038088.1| - 0.00043 19.8 1.8 0.00052 19.5 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3353) DUF981 PF06168.6 gi|313116964|ref|YP_004038088.1| - 0.015 15.0 3.8 0.018 14.8 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) COX15-CtaA PF02628.10 gi|313116964|ref|YP_004038088.1| - 0.052 12.4 1.3 0.054 12.3 0.9 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein 7TMR-DISM_7TM PF07695.6 gi|313116964|ref|YP_004038088.1| - 0.097 12.3 2.6 0.14 11.8 1.8 1.3 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF4199 PF13858.1 gi|313116964|ref|YP_004038088.1| - 0.18 11.7 1.9 0.15 11.9 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF202 PF02656.10 gi|313116964|ref|YP_004038088.1| - 4 7.7 5.0 23 5.3 3.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) HTH_20 PF12840.2 gi|313116965|ref|YP_004038089.1| - 1.3e-11 44.1 0.1 1.9e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|313116965|ref|YP_004038089.1| - 4.3e-05 23.1 0.0 6.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313116965|ref|YP_004038089.1| - 7.7e-05 22.2 0.0 0.00016 21.1 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313116965|ref|YP_004038089.1| - 0.016 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|313116965|ref|YP_004038089.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF4423 PF14394.1 gi|313116965|ref|YP_004038089.1| - 0.093 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|313116965|ref|YP_004038089.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.14 gi|313116965|ref|YP_004038089.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.1 gi|313116965|ref|YP_004038089.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|313116966|ref|YP_004038090.1| - 3.3e-19 68.2 0.0 5.6e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|313116966|ref|YP_004038090.1| - 0.0013 18.2 2.4 0.059 12.9 0.0 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain PuR_N PF09182.5 gi|313116966|ref|YP_004038090.1| - 0.0075 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal HTH_24 PF13412.1 gi|313116966|ref|YP_004038090.1| - 0.0086 15.4 0.0 0.03 13.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313116966|ref|YP_004038090.1| - 0.0086 15.7 0.1 0.036 13.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313116966|ref|YP_004038090.1| - 0.029 14.1 0.3 0.27 11.0 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313116966|ref|YP_004038090.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain UPF0122 PF04297.9 gi|313116966|ref|YP_004038090.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2249 PF10006.4 gi|313116967|ref|YP_004038091.1| - 2.9e-22 78.0 0.1 3.2e-22 77.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|313116968|ref|YP_004038092.1| - 1.6e-15 56.4 1.0 1.9e-15 56.1 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|313116968|ref|YP_004038092.1| - 0.00017 21.1 0.0 0.00021 20.7 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Y2_Tnp PF04986.8 gi|313116968|ref|YP_004038092.1| - 0.062 13.0 0.0 0.077 12.7 0.0 1.1 1 0 0 1 1 1 0 Putative transposase Radical_SAM PF04055.16 gi|313116969|ref|YP_004038093.1| - 9.6e-19 68.1 0.0 1.3e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|313116969|ref|YP_004038093.1| - 3.8e-06 26.9 0.0 7.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|313116969|ref|YP_004038093.1| - 4.2e-05 23.6 0.0 6.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAGK_cat PF00781.19 gi|313116969|ref|YP_004038093.1| - 0.032 13.6 0.0 0.082 12.3 0.0 1.7 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain TP_methylase PF00590.15 gi|313116969|ref|YP_004038093.1| - 0.035 13.8 0.1 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1906 PF08924.6 gi|313116969|ref|YP_004038093.1| - 0.1 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) GlutR_dimer PF00745.15 gi|313116970|ref|YP_004038094.1| - 2.5e-08 33.7 1.3 3.1e-08 33.4 0.9 1.1 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain DUF2564 PF10819.3 gi|313116970|ref|YP_004038094.1| - 0.057 13.5 0.4 0.081 13.0 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2564) GPP34 PF05719.6 gi|313116970|ref|YP_004038094.1| - 0.062 13.3 0.4 0.073 13.1 0.3 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) EcoEI_R_C PF08463.5 gi|313116970|ref|YP_004038094.1| - 0.076 12.8 0.0 0.083 12.7 0.0 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal Copper-bind PF00127.15 gi|313116971|ref|YP_004038095.1| - 4.6e-15 55.6 1.2 2.2e-14 53.4 0.8 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313116971|ref|YP_004038095.1| - 5.4e-05 23.0 0.1 7.6e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|313116971|ref|YP_004038095.1| - 0.00061 19.5 2.7 0.0012 18.6 1.9 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence F5_F8_type_C PF00754.20 gi|313116972|ref|YP_004038096.1| - 0.019 14.7 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 F5/8 type C domain DUF4064 PF13273.1 gi|313116973|ref|YP_004038097.1| - 0.5 10.4 5.2 0.85 9.7 0.0 3.6 4 1 0 4 4 4 0 Protein of unknown function (DUF4064) Ectatomin PF06457.6 gi|313116974|ref|YP_004038098.1| - 0.14 11.8 0.0 0.23 11.2 0.0 1.4 1 1 0 1 1 1 0 Ectatomin Cu-oxidase_2 PF07731.9 gi|313116975|ref|YP_004038099.1| - 4.7e-30 103.8 14.6 2.4e-18 65.9 3.1 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|313116975|ref|YP_004038099.1| - 3.3e-22 78.4 7.1 6.6e-19 67.7 0.5 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|313116975|ref|YP_004038099.1| - 4.4e-12 46.1 0.2 1.9e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|313116975|ref|YP_004038099.1| - 2.8e-06 27.1 0.0 0.022 14.6 0.0 2.6 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|313116975|ref|YP_004038099.1| - 0.018 14.9 1.8 0.035 14.1 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|313116976|ref|YP_004038100.1| - 1.7e-29 101.9 8.5 3.1e-14 52.9 0.6 3.3 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family DUF272 PF03312.10 gi|313116976|ref|YP_004038100.1| - 0.0024 18.0 0.2 2.4 8.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF272) DUF2924 PF11149.3 gi|313116976|ref|YP_004038100.1| - 0.094 12.7 0.4 8.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) Dsh_C PF12316.3 gi|313116976|ref|YP_004038100.1| - 0.26 11.3 5.0 0.061 13.4 1.0 1.8 2 0 0 2 2 2 0 Segment polarity protein dishevelled (Dsh) C terminal Peripla_BP_2 PF01497.13 gi|313116977|ref|YP_004038101.1| - 1.2e-16 60.5 0.0 1.6e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PDGLE PF13190.1 gi|313116977|ref|YP_004038101.1| - 0.16 11.6 0.6 0.72 9.5 0.0 2.1 2 0 0 2 2 2 0 PDGLE domain UCR_Fe-S_N PF10399.4 gi|313116977|ref|YP_004038101.1| - 0.94 8.7 3.9 27 4.0 0.0 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Aminotran_5 PF00266.14 gi|313116978|ref|YP_004038102.1| - 3.9e-149 496.4 0.0 4.7e-149 496.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V NifU_N PF01592.11 gi|313116978|ref|YP_004038102.1| - 5.9e-15 55.3 0.0 1.1e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain DegT_DnrJ_EryC1 PF01041.12 gi|313116978|ref|YP_004038102.1| - 7.1e-12 45.0 0.4 1.1e-11 44.3 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|313116978|ref|YP_004038102.1| - 1.7e-07 30.7 0.0 2.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313116978|ref|YP_004038102.1| - 4.3e-05 21.9 0.1 9.3e-05 20.8 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|313116978|ref|YP_004038102.1| - 0.00081 17.9 0.0 0.0017 16.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Glyoxalase_2 PF12681.2 gi|313116979|ref|YP_004038103.1| - 3.9e-18 66.0 0.0 4.6e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313116979|ref|YP_004038103.1| - 1.1e-16 60.9 0.0 1.3e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313116979|ref|YP_004038103.1| - 9.3e-13 48.1 0.0 1.1e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313116979|ref|YP_004038103.1| - 2.5e-05 24.2 0.0 4.1e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain AAA_16 PF13191.1 gi|313116980|ref|YP_004038104.1| - 3.1e-16 59.8 0.3 3.3e-15 56.5 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|313116980|ref|YP_004038104.1| - 5.3e-15 54.9 0.0 2.1e-14 52.9 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|313116980|ref|YP_004038104.1| - 2.6e-13 50.2 0.1 7.8e-13 48.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|313116980|ref|YP_004038104.1| - 3.3e-06 26.1 0.0 8.1e-06 24.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|313116980|ref|YP_004038104.1| - 2.1e-05 24.2 0.0 5e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313116980|ref|YP_004038104.1| - 3.8e-05 23.8 0.3 0.00013 22.2 0.2 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|313116980|ref|YP_004038104.1| - 4.5e-05 22.9 0.0 8.5e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|313116980|ref|YP_004038104.1| - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|313116980|ref|YP_004038104.1| - 0.00016 21.3 0.6 0.00041 20.0 0.1 1.8 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|313116980|ref|YP_004038104.1| - 0.00025 21.1 0.0 0.00075 19.5 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|313116980|ref|YP_004038104.1| - 0.00038 20.1 0.0 0.00071 19.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|313116980|ref|YP_004038104.1| - 0.00062 20.0 0.0 0.0018 18.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter IstB_IS21 PF01695.12 gi|313116980|ref|YP_004038104.1| - 0.00076 18.9 0.1 0.022 14.1 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein NB-ARC PF00931.17 gi|313116980|ref|YP_004038104.1| - 0.00087 18.2 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain DUF2791 PF10923.3 gi|313116980|ref|YP_004038104.1| - 0.00089 17.9 0.0 0.0021 16.7 0.0 1.6 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) AAA_32 PF13654.1 gi|313116980|ref|YP_004038104.1| - 0.0011 17.7 0.1 0.32 9.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|313116980|ref|YP_004038104.1| - 0.0013 18.8 0.1 0.0046 17.1 0.1 2.1 1 1 0 1 1 1 1 RNA helicase AAA_25 PF13481.1 gi|313116980|ref|YP_004038104.1| - 0.0016 17.8 0.6 0.018 14.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|313116980|ref|YP_004038104.1| - 0.0036 18.1 0.9 0.012 16.4 0.6 2.2 1 1 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|313116980|ref|YP_004038104.1| - 0.0049 16.1 0.1 0.73 9.0 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein DAP3 PF10236.4 gi|313116980|ref|YP_004038104.1| - 0.022 13.7 0.0 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.24 gi|313116980|ref|YP_004038104.1| - 0.04 13.4 0.9 2.7 7.4 0.1 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_2 PF07724.9 gi|313116980|ref|YP_004038104.1| - 0.052 13.4 0.1 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PIF1 PF05970.9 gi|313116980|ref|YP_004038104.1| - 0.055 12.4 0.1 0.28 10.0 0.0 2.1 2 1 0 2 2 2 0 PIF1-like helicase DUF2075 PF09848.4 gi|313116980|ref|YP_004038104.1| - 0.081 11.8 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|313116980|ref|YP_004038104.1| - 0.083 12.7 0.1 0.45 10.3 0.0 2.2 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|313116980|ref|YP_004038104.1| - 0.09 12.2 0.2 10 5.5 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family PCP_red PF08369.5 gi|313116980|ref|YP_004038104.1| - 0.1 12.4 0.0 0.36 10.7 0.0 1.9 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit AAA PF00004.24 gi|313116981|ref|YP_004038105.1| - 5.9e-39 133.2 0.0 1.6e-38 131.8 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313116981|ref|YP_004038105.1| - 1.1e-06 28.4 0.5 7.7e-06 25.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|313116981|ref|YP_004038105.1| - 1.1e-05 26.1 0.0 5.8e-05 23.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313116981|ref|YP_004038105.1| - 3.5e-05 23.8 0.6 3.5e-05 23.8 0.4 2.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|313116981|ref|YP_004038105.1| - 4.5e-05 23.3 0.0 0.00018 21.4 0.0 2.1 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|313116981|ref|YP_004038105.1| - 5e-05 22.4 0.0 0.00012 21.2 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|313116981|ref|YP_004038105.1| - 7.2e-05 22.9 1.3 0.0023 18.0 0.3 2.7 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|313116981|ref|YP_004038105.1| - 0.00017 21.8 0.0 0.00034 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|313116981|ref|YP_004038105.1| - 0.00077 19.1 0.1 0.0035 17.0 0.1 2.2 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|313116981|ref|YP_004038105.1| - 0.0014 18.5 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|313116981|ref|YP_004038105.1| - 0.0028 16.7 0.0 0.011 14.7 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|313116981|ref|YP_004038105.1| - 0.004 17.1 4.8 0.061 13.2 0.1 3.6 3 1 0 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|313116981|ref|YP_004038105.1| - 0.0054 16.1 0.1 0.013 14.9 0.1 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|313116981|ref|YP_004038105.1| - 0.0062 15.2 0.0 0.014 14.1 0.0 1.4 1 1 0 1 1 1 1 TIP49 C-terminus AAA_2 PF07724.9 gi|313116981|ref|YP_004038105.1| - 0.0078 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|313116981|ref|YP_004038105.1| - 0.0086 15.0 0.0 0.15 10.9 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|313116981|ref|YP_004038105.1| - 0.012 15.0 0.5 2.3 7.5 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|313116981|ref|YP_004038105.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|313116981|ref|YP_004038105.1| - 0.013 14.7 0.0 0.029 13.5 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|313116981|ref|YP_004038105.1| - 0.014 14.4 0.1 0.24 10.3 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|313116981|ref|YP_004038105.1| - 0.02 14.5 0.4 5.8 6.5 0.1 2.4 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|313116981|ref|YP_004038105.1| - 0.027 14.6 0.0 0.055 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|313116981|ref|YP_004038105.1| - 0.029 14.4 0.1 0.22 11.5 0.1 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain Cytidylate_kin2 PF13189.1 gi|313116981|ref|YP_004038105.1| - 0.041 13.7 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase-like family Torsin PF06309.6 gi|313116981|ref|YP_004038105.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_11 PF13086.1 gi|313116981|ref|YP_004038105.1| - 0.063 12.8 0.0 0.11 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|313116981|ref|YP_004038105.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|313116981|ref|YP_004038105.1| - 0.099 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DXP_reductoisom PF02670.11 gi|313116981|ref|YP_004038105.1| - 0.11 13.0 1.1 0.24 11.9 0.1 2.0 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDE_Tnp_IS240 PF13610.1 gi|313116982|ref|YP_004038106.1| - 4.3e-28 98.0 0.0 8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313116982|ref|YP_004038106.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313116982|ref|YP_004038106.1| - 0.0039 16.4 0.1 0.0076 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313116982|ref|YP_004038106.1| - 0.0062 16.6 0.2 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313116982|ref|YP_004038106.1| - 0.031 14.3 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313116982|ref|YP_004038106.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease Cylicin_N PF15241.1 gi|313116983|ref|YP_004038107.1| - 0.19 11.5 2.3 0.25 11.2 0.2 2.1 1 1 1 2 2 2 0 Cylicin N-terminus Spore_coat_CotO PF14153.1 gi|313116983|ref|YP_004038107.1| - 0.24 10.8 11.6 0.28 10.5 8.0 1.1 1 0 0 1 1 1 0 Spore coat protein CotO Borrelia_P83 PF05262.6 gi|313116983|ref|YP_004038107.1| - 0.24 9.6 10.0 0.27 9.4 6.9 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Peptidase_S64 PF08192.6 gi|313116983|ref|YP_004038107.1| - 0.72 8.1 4.8 0.8 7.9 3.3 1.0 1 0 0 1 1 1 0 Peptidase family S64 Mucin PF01456.12 gi|313116983|ref|YP_004038107.1| - 0.92 9.2 8.3 1.2 8.9 5.7 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein Sec62 PF03839.11 gi|313116983|ref|YP_004038107.1| - 1.8 7.9 7.9 2.2 7.6 5.5 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 SAPS PF04499.10 gi|313116983|ref|YP_004038107.1| - 2.3 6.7 12.0 2.6 6.5 8.3 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF2201_N PF13203.1 gi|313116983|ref|YP_004038107.1| - 4.3 6.4 10.1 4.8 6.2 7.0 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain CDC45 PF02724.9 gi|313116983|ref|YP_004038107.1| - 4.9 5.0 15.0 5.9 4.7 10.4 1.1 1 0 0 1 1 1 0 CDC45-like protein Ycf1 PF05758.7 gi|313116983|ref|YP_004038107.1| - 5.2 4.6 10.1 5.8 4.4 7.0 1.0 1 0 0 1 1 1 0 Ycf1 Tom37_C PF11801.3 gi|313116983|ref|YP_004038107.1| - 5.5 6.8 7.4 6.9 6.4 5.1 1.2 1 0 0 1 1 1 0 Tom37 C-terminal domain PIH1 PF08190.7 gi|313116983|ref|YP_004038107.1| - 6.6 6.0 13.7 17 4.7 9.7 1.4 1 1 1 2 2 2 0 pre-RNA processing PIH1/Nop17 DDRGK PF09756.4 gi|313116983|ref|YP_004038107.1| - 7.2 5.9 17.6 11 5.3 12.2 1.4 1 0 0 1 1 1 0 DDRGK domain eIF-3c_N PF05470.7 gi|313116983|ref|YP_004038107.1| - 8 4.4 13.0 9.8 4.1 9.0 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus CbiA PF01656.18 gi|313116984|ref|YP_004038108.1| - 1.1e-31 109.7 0.0 1.3e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313116984|ref|YP_004038108.1| - 1e-14 54.7 0.0 1.7e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|313116984|ref|YP_004038108.1| - 4.6e-13 48.8 3.3 1.7e-10 40.4 2.3 2.1 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|313116984|ref|YP_004038108.1| - 8.6e-08 31.6 0.0 0.00038 19.7 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|313116984|ref|YP_004038108.1| - 4.2e-07 29.3 1.8 5.5e-06 25.6 0.4 3.1 1 1 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|313116984|ref|YP_004038108.1| - 7.2e-05 22.2 0.0 0.00024 20.5 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein ATP_bind_1 PF03029.12 gi|313116984|ref|YP_004038108.1| - 0.0058 16.2 4.0 0.83 9.1 2.7 3.1 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein UPF0146 PF03686.8 gi|313116984|ref|YP_004038108.1| - 0.036 13.8 0.8 2.1 8.2 0.0 2.6 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) AAA_16 PF13191.1 gi|313116984|ref|YP_004038108.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Pyridox_ox_2 PF12900.2 gi|313116985|ref|YP_004038109.1| - 1.2e-17 64.1 0.0 1.3e-17 63.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|313116985|ref|YP_004038109.1| - 2.2e-05 24.3 0.0 2.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Nefa_Nip30_N PF10187.4 gi|313116985|ref|YP_004038109.1| - 0.12 12.5 0.0 0.91 9.7 0.1 2.0 1 1 1 2 2 2 0 N-terminal domain of NEFA-interacting nuclear protein NIP30 PPDK_N PF01326.14 gi|313116986|ref|YP_004038110.1| - 7.8e-90 301.2 0.4 1.6e-89 300.2 0.2 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|313116986|ref|YP_004038110.1| - 2.6e-21 74.9 0.1 6.4e-21 73.7 0.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Beta-lactamase PF00144.19 gi|313116987|ref|YP_004038111.1| - 9.9e-52 175.9 1.4 1.8e-51 175.1 1.0 1.3 1 0 0 1 1 1 1 Beta-lactamase Usp PF00582.21 gi|313116988|ref|YP_004038112.1| - 0.00065 19.9 0.1 0.015 15.5 0.0 2.7 2 1 0 2 2 2 1 Universal stress protein family IU_nuc_hydro PF01156.14 gi|313116990|ref|YP_004038114.1| - 5.9e-83 278.6 0.9 7e-83 278.4 0.7 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase adh_short PF00106.20 gi|313116991|ref|YP_004038115.1| - 2.5e-36 125.1 0.3 3.3e-36 124.6 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313116991|ref|YP_004038115.1| - 2.1e-33 116.0 0.0 2.8e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313116991|ref|YP_004038115.1| - 2.9e-16 59.6 0.0 4.2e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|313116991|ref|YP_004038115.1| - 0.00051 19.7 0.1 0.00077 19.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|313116991|ref|YP_004038115.1| - 0.0012 18.3 0.1 0.002 17.6 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313116991|ref|YP_004038115.1| - 0.0015 17.3 0.2 0.0018 17.0 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 2-Hacid_dh_C PF02826.14 gi|313116991|ref|YP_004038115.1| - 0.008 15.3 0.7 0.013 14.6 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|313116991|ref|YP_004038115.1| - 0.011 15.5 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DFP PF04127.10 gi|313116991|ref|YP_004038115.1| - 0.025 14.2 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein NmrA PF05368.8 gi|313116991|ref|YP_004038115.1| - 0.046 12.9 0.0 0.097 11.9 0.0 1.5 1 0 0 1 1 1 0 NmrA-like family PALP PF00291.20 gi|313116991|ref|YP_004038115.1| - 0.051 12.7 0.3 0.068 12.3 0.2 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme THF_DHG_CYH_C PF02882.14 gi|313116991|ref|YP_004038115.1| - 0.081 11.9 0.0 0.26 10.3 0.0 1.8 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|313116991|ref|YP_004038115.1| - 0.083 12.6 0.2 0.19 11.5 0.1 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PfkB PF00294.19 gi|313116992|ref|YP_004038116.1| - 2.7e-43 148.2 5.2 5.3e-43 147.2 3.6 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|313116992|ref|YP_004038116.1| - 5.8e-06 25.6 0.0 0.0003 20.0 0.0 2.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|313116992|ref|YP_004038116.1| - 0.00013 21.3 0.6 0.0009 18.5 0.4 2.0 1 1 0 1 1 1 1 Carbohydrate kinase PepSY_2 PF13670.1 gi|313116992|ref|YP_004038116.1| - 0.0015 18.4 0.6 0.0043 16.9 0.4 1.8 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain DUF3035 PF11233.3 gi|313116992|ref|YP_004038116.1| - 0.026 14.5 0.1 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3035) Herpes_UL1 PF05259.6 gi|313116992|ref|YP_004038116.1| - 0.029 13.8 0.0 0.071 12.5 0.0 1.6 2 0 0 2 2 2 0 Herpesvirus glycoprotein L DUF4232 PF14016.1 gi|313116993|ref|YP_004038117.1| - 0.011 15.3 0.4 0.035 13.7 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) DAO PF01266.19 gi|313116994|ref|YP_004038118.1| - 6e-15 55.0 0.7 2.4e-07 30.0 0.1 2.2 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|313116994|ref|YP_004038118.1| - 1.8e-09 37.7 0.1 5e-09 36.3 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313116994|ref|YP_004038118.1| - 6.6e-07 28.7 6.4 6.8e-07 28.7 0.6 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|313116994|ref|YP_004038118.1| - 8.6e-07 28.1 0.5 2.5e-06 26.6 0.3 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|313116994|ref|YP_004038118.1| - 1.3e-06 27.5 3.5 2.9e-06 26.4 0.1 2.7 3 1 1 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313116994|ref|YP_004038118.1| - 2.6e-06 27.3 0.2 6.4e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313116994|ref|YP_004038118.1| - 3.6e-06 25.6 0.1 9e-05 21.1 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|313116994|ref|YP_004038118.1| - 1.1e-05 24.5 0.0 0.018 13.9 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|313116994|ref|YP_004038118.1| - 1.1e-05 24.6 0.0 2.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|313116994|ref|YP_004038118.1| - 2.2e-05 24.5 0.1 0.17 11.9 0.0 2.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313116994|ref|YP_004038118.1| - 0.00048 19.2 0.1 0.0024 17.0 0.0 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|313116994|ref|YP_004038118.1| - 0.0019 18.5 0.4 0.0057 17.0 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|313116994|ref|YP_004038118.1| - 0.0028 17.2 0.0 0.0058 16.2 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|313116994|ref|YP_004038118.1| - 0.055 13.1 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|313116994|ref|YP_004038118.1| - 0.24 11.1 4.6 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding TMP-TENI PF02581.12 gi|313116995|ref|YP_004038119.1| - 2.8e-60 202.5 3.3 3.9e-60 202.0 2.3 1.2 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|313116995|ref|YP_004038119.1| - 2.2e-06 26.9 3.9 2.2e-06 26.9 2.7 2.1 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|313116995|ref|YP_004038119.1| - 1.1e-05 24.6 2.1 1.1e-05 24.6 1.4 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|313116995|ref|YP_004038119.1| - 0.0014 17.9 8.1 0.0022 17.1 5.6 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.7 gi|313116995|ref|YP_004038119.1| - 0.02 13.8 0.5 0.054 12.4 0.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|313116995|ref|YP_004038119.1| - 0.042 13.1 3.6 0.12 11.6 1.1 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein IMPDH PF00478.20 gi|313116995|ref|YP_004038119.1| - 0.36 9.6 5.5 0.73 8.6 3.5 1.5 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|313116995|ref|YP_004038119.1| - 0.51 9.2 6.0 17 4.3 2.1 2.7 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|313116995|ref|YP_004038119.1| - 0.84 8.8 8.2 2 7.6 0.1 2.6 1 1 2 3 3 3 0 PcrB family HK PF02110.10 gi|313116996|ref|YP_004038120.1| - 2.9e-65 219.8 5.4 3.6e-65 219.5 3.7 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|313116996|ref|YP_004038120.1| - 1.9e-05 24.0 0.7 2.6e-05 23.5 0.5 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|313116996|ref|YP_004038120.1| - 0.12 11.5 8.3 0.044 13.0 3.1 1.8 1 1 1 2 2 2 0 Carbohydrate kinase adh_short PF00106.20 gi|313116997|ref|YP_004038121.1| - 1.3e-32 113.0 4.5 1.7e-32 112.6 3.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313116997|ref|YP_004038121.1| - 1.8e-26 93.3 0.0 2.1e-26 93.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313116997|ref|YP_004038121.1| - 9e-21 74.3 2.0 1.2e-20 73.9 1.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313116997|ref|YP_004038121.1| - 2.8e-09 36.7 0.3 5.8e-09 35.7 0.2 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313116997|ref|YP_004038121.1| - 0.00019 21.4 2.4 0.0003 20.8 1.7 1.4 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|313116997|ref|YP_004038121.1| - 0.00025 20.0 0.0 0.00028 19.9 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|313116997|ref|YP_004038121.1| - 0.0026 16.5 0.2 0.0034 16.1 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313116997|ref|YP_004038121.1| - 0.012 14.4 0.1 0.019 13.8 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.8 gi|313116997|ref|YP_004038121.1| - 0.093 11.9 0.3 0.17 11.1 0.2 1.4 2 0 0 2 2 2 0 NmrA-like family Phos_pyr_kin PF08543.7 gi|313116998|ref|YP_004038122.1| - 4.2e-84 281.5 0.1 5.2e-84 281.2 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|313116998|ref|YP_004038122.1| - 6.6e-10 38.6 0.6 9.2e-10 38.1 0.4 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|313116998|ref|YP_004038122.1| - 0.011 15.0 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate kinase HK PF02110.10 gi|313116998|ref|YP_004038122.1| - 0.016 14.4 0.1 0.17 11.0 0.0 2.0 2 0 0 2 2 2 0 Hydroxyethylthiazole kinase family DrsE_2 PF13686.1 gi|313116999|ref|YP_004038123.1| - 1.3e-52 177.4 0.0 1.6e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|313116999|ref|YP_004038123.1| - 1e-06 28.7 0.0 1.3e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 DsrE/DsrF-like family Packaging_FI PF14000.1 gi|313116999|ref|YP_004038123.1| - 0.026 14.6 0.0 0.059 13.5 0.0 1.5 1 1 0 1 1 1 0 DNA packaging protein FI TusA PF01206.12 gi|313117000|ref|YP_004038124.1| - 3.8e-21 74.4 0.0 4.3e-21 74.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|313117000|ref|YP_004038124.1| - 0.055 13.0 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.22 gi|313117001|ref|YP_004038125.1| - 7.2e-26 91.0 4.6 1.1e-25 90.5 3.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|313117001|ref|YP_004038125.1| - 1.4e-10 41.5 0.0 2.5e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|313117001|ref|YP_004038125.1| - 0.0095 15.5 0.2 0.083 12.4 0.2 2.2 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|313117001|ref|YP_004038125.1| - 0.078 12.6 0.1 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF4341 PF14241.1 gi|313117002|ref|YP_004038126.1| - 7.1e-17 60.8 10.2 1.9e-16 59.5 2.6 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|313117002|ref|YP_004038126.1| - 1e-10 41.4 20.6 5.2e-10 39.1 6.2 3.0 3 0 0 3 3 3 2 Sulphur transport Sulf_transp PF04143.9 gi|313117003|ref|YP_004038127.1| - 4.2e-09 36.2 7.9 4.2e-09 36.2 5.5 2.8 3 0 0 3 3 3 2 Sulphur transport DUF624 PF04854.9 gi|313117003|ref|YP_004038127.1| - 5.6 6.9 6.7 20 5.0 0.6 2.9 1 1 1 2 2 2 0 Protein of unknown function, DUF624 Ribonuc_red_sm PF00268.16 gi|313117005|ref|YP_004038129.1| - 2.4e-42 144.8 0.0 7.1e-42 143.3 0.0 1.6 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain Ribonuc_red_lgC PF02867.10 gi|313117006|ref|YP_004038130.1| - 6.8e-199 661.8 0.0 8.7e-199 661.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|313117006|ref|YP_004038130.1| - 2.2e-21 75.4 0.0 1.7e-20 72.5 0.0 2.4 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|313117007|ref|YP_004038131.1| - 9.4e-18 64.4 0.1 1.3e-17 64.0 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.2 gi|313117007|ref|YP_004038131.1| - 0.0011 18.7 1.4 0.0016 18.1 1.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|313117007|ref|YP_004038131.1| - 0.018 14.6 3.4 0.031 13.8 2.3 1.4 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|313117007|ref|YP_004038131.1| - 0.071 12.4 0.5 0.071 12.4 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.8 gi|313117007|ref|YP_004038131.1| - 0.1 12.3 0.6 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.1 gi|313117007|ref|YP_004038131.1| - 0.19 12.1 1.7 1.1 9.7 0.6 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Na_Ca_ex PF01699.19 gi|313117008|ref|YP_004038132.1| - 1.7e-38 131.4 26.8 1.1e-20 73.6 6.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein 2TM PF13239.1 gi|313117008|ref|YP_004038132.1| - 0.32 11.0 2.8 0.87 9.6 0.0 2.9 3 0 0 3 3 3 0 2TM domain APH PF01636.18 gi|313117010|ref|YP_004038134.1| - 1.9e-21 76.9 2.8 1.9e-21 76.9 2.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|313117010|ref|YP_004038134.1| - 4.5e-07 29.1 0.0 6.9e-06 25.2 0.0 2.4 1 1 0 1 1 1 1 Fructosamine kinase HD PF01966.17 gi|313117010|ref|YP_004038134.1| - 0.048 13.6 0.3 0.18 11.8 0.3 1.8 1 1 0 1 1 1 0 HD domain Lon_2 PF13337.1 gi|313117010|ref|YP_004038134.1| - 0.19 10.0 0.0 0.27 9.5 0.0 1.1 1 0 0 1 1 1 0 Putative ATP-dependent Lon protease Peptidase_S8 PF00082.17 gi|313117011|ref|YP_004038135.1| - 8.2e-28 97.3 0.2 1.1e-27 96.8 0.1 1.2 1 0 0 1 1 1 1 Subtilase family Rhomboid PF01694.17 gi|313117012|ref|YP_004038136.1| - 2e-18 66.8 15.7 2e-18 66.8 10.9 1.6 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|313117012|ref|YP_004038136.1| - 0.14 12.5 3.4 0.22 11.8 0.0 2.5 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) DUF1673 PF07895.6 gi|313117012|ref|YP_004038136.1| - 1.5 8.3 5.0 4.3 6.7 0.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1673) HTH_24 PF13412.1 gi|313117013|ref|YP_004038137.1| - 7.5e-07 28.4 0.0 1.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117013|ref|YP_004038137.1| - 9e-07 28.4 0.1 1.1e-06 28.2 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313117013|ref|YP_004038137.1| - 9.3e-07 28.4 0.0 1.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|313117013|ref|YP_004038137.1| - 2e-05 23.8 0.1 2.9e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|313117013|ref|YP_004038137.1| - 7.3e-05 23.0 0.1 9.1e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|313117013|ref|YP_004038137.1| - 0.00025 20.5 0.2 0.00036 19.9 0.1 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|313117013|ref|YP_004038137.1| - 0.00028 20.9 0.0 0.0004 20.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|313117013|ref|YP_004038137.1| - 0.00065 18.9 0.0 0.00083 18.6 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.15 gi|313117013|ref|YP_004038137.1| - 0.00067 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|313117013|ref|YP_004038137.1| - 0.00087 18.9 0.2 0.0013 18.4 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313117013|ref|YP_004038137.1| - 0.00095 18.9 0.1 0.0014 18.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|313117013|ref|YP_004038137.1| - 0.0016 18.0 0.1 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|313117013|ref|YP_004038137.1| - 0.0031 17.1 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|313117013|ref|YP_004038137.1| - 0.0034 16.8 0.0 0.004 16.6 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|313117013|ref|YP_004038137.1| - 0.0093 15.7 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|313117013|ref|YP_004038137.1| - 0.02 14.9 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|313117013|ref|YP_004038137.1| - 0.035 14.1 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|313117013|ref|YP_004038137.1| - 0.045 14.1 0.0 0.05 14.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal RepL PF05732.6 gi|313117013|ref|YP_004038137.1| - 0.059 12.5 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_41 PF14502.1 gi|313117013|ref|YP_004038137.1| - 0.059 12.9 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.6 gi|313117013|ref|YP_004038137.1| - 0.099 12.3 0.1 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal Pyr_redox_2 PF07992.9 gi|313117014|ref|YP_004038138.1| - 2.1e-16 60.3 0.9 3.1e-13 50.0 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|313117014|ref|YP_004038138.1| - 1.1e-13 50.7 0.0 1.6e-06 27.2 0.0 2.0 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313117014|ref|YP_004038138.1| - 4.9e-10 38.4 0.0 2.6e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|313117014|ref|YP_004038138.1| - 1.6e-09 37.6 0.1 4e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|313117014|ref|YP_004038138.1| - 5.6e-08 33.0 0.6 0.01 15.8 0.0 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313117014|ref|YP_004038138.1| - 2.7e-07 29.8 0.6 3.9e-05 22.6 0.0 2.4 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|313117014|ref|YP_004038138.1| - 3.4e-07 29.4 0.2 8.6e-07 28.1 0.0 1.7 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|313117014|ref|YP_004038138.1| - 1.3e-06 27.6 0.1 8.7e-05 21.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|313117014|ref|YP_004038138.1| - 4.2e-06 26.7 0.0 1.2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|313117014|ref|YP_004038138.1| - 9.4e-06 24.5 1.8 0.002 16.8 0.3 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|313117014|ref|YP_004038138.1| - 3.3e-05 22.9 0.1 0.064 12.1 0.0 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|313117014|ref|YP_004038138.1| - 5.6e-05 22.3 0.2 0.0001 21.5 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|313117014|ref|YP_004038138.1| - 0.00056 19.0 0.0 0.0014 17.7 0.0 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|313117014|ref|YP_004038138.1| - 0.0016 18.7 0.0 0.0043 17.4 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|313117014|ref|YP_004038138.1| - 0.0033 17.0 0.4 0.011 15.2 0.0 1.9 1 1 1 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|313117014|ref|YP_004038138.1| - 0.031 13.9 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|313117014|ref|YP_004038138.1| - 0.076 13.2 0.0 0.1 12.8 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding Cytomega_UL20A PF05984.7 gi|313117014|ref|YP_004038138.1| - 0.14 12.3 2.8 1.7 8.9 0.6 2.3 1 1 0 2 2 2 0 Cytomegalovirus UL20A protein UPF0104 PF03706.8 gi|313117015|ref|YP_004038139.1| - 8.1e-15 54.8 28.8 1.1e-14 54.4 19.9 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) PAS_4 PF08448.5 gi|313117016|ref|YP_004038140.1| - 9.3e-40 135.0 12.9 7.5e-13 48.4 0.1 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.1 gi|313117016|ref|YP_004038140.1| - 3.4e-32 110.8 0.3 7.1e-12 45.6 0.0 4.8 5 0 0 5 5 5 4 PAS domain PAS PF00989.19 gi|313117016|ref|YP_004038140.1| - 3.8e-28 97.5 0.4 2.2e-12 46.7 0.0 5.3 4 1 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|313117016|ref|YP_004038140.1| - 1.5e-21 76.5 0.0 3.8e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|313117016|ref|YP_004038140.1| - 7.1e-20 70.1 1.3 1.2e-06 28.1 0.0 4.9 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|313117016|ref|YP_004038140.1| - 1.6e-17 63.1 0.0 4.1e-17 61.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|313117016|ref|YP_004038140.1| - 8.5e-11 41.7 1.5 8.5e-11 41.7 1.0 3.7 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|313117016|ref|YP_004038140.1| - 6.1e-09 35.8 0.4 0.015 15.2 0.0 5.3 4 2 1 5 5 5 2 PAS fold PAS_3 PF08447.6 gi|313117016|ref|YP_004038140.1| - 4.9e-08 32.9 0.0 0.0016 18.4 0.0 3.6 3 0 0 3 3 3 2 PAS fold OKR_DC_1_N PF03709.10 gi|313117016|ref|YP_004038140.1| - 0.00083 19.3 0.1 0.02 14.9 0.0 2.9 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|313117016|ref|YP_004038140.1| - 0.021 14.4 0.0 0.05 13.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OrfB_IS605 PF01385.14 gi|313117017|ref|YP_004038141.1| - 1.8e-44 151.8 0.0 2.4e-44 151.4 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|313117017|ref|YP_004038141.1| - 5.9e-24 83.5 2.5 1.3e-23 82.4 1.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|313117017|ref|YP_004038141.1| - 0.18 11.8 2.7 0.5 10.4 1.9 1.8 1 0 0 1 1 1 0 C1-like domain Ribosomal_L37ae PF01780.14 gi|313117017|ref|YP_004038141.1| - 0.62 9.9 3.3 0.53 10.1 0.4 2.1 2 0 0 2 2 2 0 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.7 gi|313117017|ref|YP_004038141.1| - 6.8 6.1 8.3 52 3.2 1.6 2.9 1 1 1 2 2 2 0 TFIIB zinc-binding Peptidase_C25_C PF03785.9 gi|313117018|ref|YP_004038142.1| - 0.038 13.7 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain zinc-ribbons_6 PF07191.7 gi|313117019|ref|YP_004038143.1| - 0.007 16.1 0.7 0.0099 15.6 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbons DRP PF06044.7 gi|313117019|ref|YP_004038143.1| - 0.0077 15.2 0.1 0.0077 15.2 0.1 1.0 1 0 0 1 1 1 1 Dam-replacing family RNA_POL_M_15KD PF02150.11 gi|313117019|ref|YP_004038143.1| - 0.0087 15.7 1.0 0.014 15.0 0.7 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-FPG_IleRS PF06827.9 gi|313117019|ref|YP_004038143.1| - 0.025 14.1 2.8 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS C1_1 PF00130.17 gi|313117019|ref|YP_004038143.1| - 0.047 13.4 0.5 0.064 12.9 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ISL3 PF14690.1 gi|313117019|ref|YP_004038143.1| - 0.051 13.6 0.9 3 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|313117019|ref|YP_004038143.1| - 0.055 13.7 0.7 0.076 13.3 0.5 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|313117019|ref|YP_004038143.1| - 0.095 11.9 0.3 0.14 11.3 0.2 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|313117019|ref|YP_004038143.1| - 0.1 11.9 0.9 0.22 10.8 0.6 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding PRKCSH-like PF12999.2 gi|313117019|ref|YP_004038143.1| - 0.13 11.8 0.5 0.14 11.7 0.4 1.1 1 0 0 1 1 1 0 Glucosidase II beta subunit-like DZR PF12773.2 gi|313117019|ref|YP_004038143.1| - 0.13 12.0 1.1 0.29 10.9 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|313117019|ref|YP_004038143.1| - 0.14 11.7 1.1 0.72 9.3 0.1 1.9 1 1 1 2 2 2 0 Transposase zinc-binding domain zf-trcl PF13451.1 gi|313117019|ref|YP_004038143.1| - 0.17 11.5 1.9 1.5 8.5 1.3 2.0 1 1 0 1 1 1 0 Probable zinc-binding domain GFA PF04828.9 gi|313117019|ref|YP_004038143.1| - 0.3 11.0 1.6 4.4 7.3 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|313117019|ref|YP_004038143.1| - 0.67 9.5 3.8 16 5.0 2.6 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|313117019|ref|YP_004038143.1| - 0.91 9.1 3.6 18 4.9 2.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-B_box PF00643.19 gi|313117019|ref|YP_004038143.1| - 2.2 8.2 4.6 9.1 6.2 3.2 1.8 1 1 0 1 1 1 0 B-box zinc finger Usp PF00582.21 gi|313117020|ref|YP_004038144.1| - 3.8e-62 208.5 6.7 4.4e-34 117.6 0.6 2.1 2 0 0 2 2 2 2 Universal stress protein family Transketolase_C PF02780.15 gi|313117020|ref|YP_004038144.1| - 0.03 14.2 0.5 0.12 12.2 0.0 2.2 2 1 0 2 2 2 0 Transketolase, C-terminal domain FR47 PF08445.5 gi|313117020|ref|YP_004038144.1| - 0.05 13.3 0.1 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein Mur_ligase PF01225.20 gi|313117020|ref|YP_004038144.1| - 0.12 12.4 0.5 1.9 8.5 0.0 2.9 3 0 0 3 3 3 0 Mur ligase family, catalytic domain SHOCT PF09851.4 gi|313117021|ref|YP_004038145.1| - 3.6e-08 32.5 0.3 5.1e-08 32.1 0.2 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|313117021|ref|YP_004038145.1| - 9.3e-05 22.1 0.4 0.0002 21.0 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) VIT1 PF01988.14 gi|313117021|ref|YP_004038145.1| - 0.00012 21.6 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 VIT family TAFH PF07531.9 gi|313117021|ref|YP_004038145.1| - 0.013 15.1 0.1 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 NHR1 homology to TAF GvpG PF05120.7 gi|313117021|ref|YP_004038145.1| - 0.022 14.5 0.6 0.033 13.9 0.4 1.2 1 0 0 1 1 1 0 Gas vesicle protein G SelB-wing_2 PF09106.6 gi|313117021|ref|YP_004038145.1| - 0.027 14.3 0.1 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 Elongation factor SelB, winged helix YihI PF04220.7 gi|313117021|ref|YP_004038145.1| - 0.059 12.6 0.1 0.076 12.3 0.1 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) Amastin PF07344.6 gi|313117021|ref|YP_004038145.1| - 0.075 12.6 0.4 0.095 12.3 0.3 1.1 1 0 0 1 1 1 0 Amastin surface glycoprotein DUF3650 PF12368.3 gi|313117021|ref|YP_004038145.1| - 0.089 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) Tetraspannin PF00335.15 gi|313117021|ref|YP_004038145.1| - 4.2 6.5 6.4 14 4.8 5.0 1.3 1 1 0 1 1 1 0 Tetraspanin family COX1 PF00115.15 gi|313117022|ref|YP_004038146.1| - 1.5e-05 23.8 45.3 0.0013 17.3 11.3 4.7 1 1 2 4 4 4 2 Cytochrome C and Quinol oxidase polypeptide I Oxidored_molyb PF00174.14 gi|313117023|ref|YP_004038147.1| - 2.8e-15 56.1 0.0 3.2e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cupin_2 PF07883.6 gi|313117024|ref|YP_004038148.1| - 2.1e-06 27.1 0.1 3.1e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|313117024|ref|YP_004038148.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|313117024|ref|YP_004038148.1| - 0.068 12.6 0.0 0.083 12.3 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_2 PF07883.6 gi|313117025|ref|YP_004038149.1| - 1.9e-08 33.6 0.5 3.6e-08 32.7 0.1 1.6 1 1 1 2 2 2 1 Cupin domain AraC_binding_2 PF14525.1 gi|313117025|ref|YP_004038149.1| - 0.00077 19.0 0.1 0.001 18.6 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.14 gi|313117025|ref|YP_004038149.1| - 0.0099 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain HutD PF05962.6 gi|313117025|ref|YP_004038149.1| - 0.023 14.4 0.0 0.026 14.2 0.0 1.1 1 0 0 1 1 1 0 HutD DUF1637 PF07847.7 gi|313117025|ref|YP_004038149.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Pirin_C PF05726.8 gi|313117025|ref|YP_004038149.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_7 PF12973.2 gi|313117025|ref|YP_004038149.1| - 0.13 12.0 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_3 PF05899.7 gi|313117025|ref|YP_004038149.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PaaB PF06243.6 gi|313117026|ref|YP_004038150.1| - 1.8e-16 60.0 0.5 2.3e-16 59.6 0.4 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|313117027|ref|YP_004038151.1| - 1.8e-24 86.7 0.0 4.3e-24 85.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|313117027|ref|YP_004038151.1| - 4.3e-11 43.0 0.0 9.5e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|313117027|ref|YP_004038151.1| - 2.6e-09 37.1 0.0 9.5e-09 35.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|313117027|ref|YP_004038151.1| - 0.04 14.1 0.1 1.9 8.7 0.0 2.9 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF1906 PF08924.6 gi|313117027|ref|YP_004038151.1| - 0.088 12.6 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DUF2249 PF10006.4 gi|313117028|ref|YP_004038152.1| - 3.6e-26 90.5 0.8 4e-26 90.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|313117028|ref|YP_004038152.1| - 0.015 14.9 0.0 0.039 13.5 0.0 1.6 2 0 0 2 2 2 0 Sulfurtransferase TusA Elf1 PF05129.8 gi|313117030|ref|YP_004038154.1| - 0.0058 16.2 0.4 0.0062 16.2 0.3 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|313117030|ref|YP_004038154.1| - 0.056 13.3 0.9 0.059 13.3 0.6 1.1 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|313117030|ref|YP_004038154.1| - 0.34 10.6 4.6 0.62 9.7 3.2 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 HTH_10 PF04967.7 gi|313117031|ref|YP_004038155.1| - 1.4e-17 63.0 0.0 2.2e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|313117031|ref|YP_004038155.1| - 0.034 13.4 0.0 0.077 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3587 PF12132.3 gi|313117031|ref|YP_004038155.1| - 0.045 12.9 0.8 0.077 12.2 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3587) LexA_DNA_bind PF01726.11 gi|313117031|ref|YP_004038155.1| - 0.074 12.6 0.1 0.22 11.1 0.0 1.8 1 1 0 1 1 1 0 LexA DNA binding domain Pcc1 PF09341.5 gi|313117031|ref|YP_004038155.1| - 0.1 12.6 0.3 0.53 10.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor Pcc1 GerE PF00196.14 gi|313117031|ref|YP_004038155.1| - 0.12 11.7 0.4 15 4.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family NfeD PF01957.13 gi|313117032|ref|YP_004038156.1| - 0.47 10.5 4.2 1 9.4 0.6 2.5 3 0 0 3 3 3 0 NfeD-like C-terminal, partner-binding DUF805 PF05656.9 gi|313117032|ref|YP_004038156.1| - 1.1 9.0 5.7 8.6 6.2 0.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF805) DUF4131 PF13567.1 gi|313117032|ref|YP_004038156.1| - 4.6 6.6 5.8 21 4.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Sensor PF13796.1 gi|313117032|ref|YP_004038156.1| - 5.4 6.5 16.8 0.2 11.2 1.1 2.9 2 1 1 3 3 3 0 Putative sensor Rieske PF00355.21 gi|313117033|ref|YP_004038157.1| - 1.1e-13 50.5 0.1 1.7e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HCV_NS1 PF01560.12 gi|313117033|ref|YP_004038157.1| - 0.086 11.2 0.2 0.12 10.8 0.1 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein E2/NS1 Cytochrom_B_N_2 PF13631.1 gi|313117034|ref|YP_004038158.1| - 8.2e-42 142.8 0.7 8.2e-42 142.8 0.5 3.3 4 1 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|313117034|ref|YP_004038158.1| - 1.1e-07 31.4 13.7 1.1e-07 31.4 9.5 2.5 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|313117034|ref|YP_004038158.1| - 0.00041 20.5 0.8 0.00041 20.5 0.5 2.5 3 0 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD SP_C-Propep PF08999.5 gi|313117034|ref|YP_004038158.1| - 0.05 13.0 0.2 0.22 11.0 0.0 2.1 3 0 0 3 3 3 0 Surfactant protein C, N terminal propeptide DUF3188 PF11384.3 gi|313117035|ref|YP_004038159.1| - 0.069 12.7 1.3 0.099 12.2 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) Molybdopterin PF00384.17 gi|313117036|ref|YP_004038160.1| - 6.2e-93 311.8 0.0 9.6e-93 311.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|313117036|ref|YP_004038160.1| - 2.2e-20 72.4 0.0 4.6e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|313117036|ref|YP_004038160.1| - 0.014 15.1 0.5 0.033 14.0 0.3 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|313117037|ref|YP_004038161.1| - 9.5e-35 118.4 6.3 9.5e-35 118.4 4.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313117037|ref|YP_004038161.1| - 3.2e-15 56.2 3.1 3.9e-08 33.5 0.0 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313117037|ref|YP_004038161.1| - 1.4e-11 43.9 17.9 1.4e-06 27.9 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313117037|ref|YP_004038161.1| - 8.7e-10 38.7 16.7 0.015 15.5 0.2 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313117037|ref|YP_004038161.1| - 6.9e-07 28.8 28.5 3.4e-05 23.4 2.1 4.7 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313117037|ref|YP_004038161.1| - 0.00053 19.7 18.8 0.018 14.8 1.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313117037|ref|YP_004038161.1| - 0.00071 19.0 29.7 0.013 15.1 1.9 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|313117037|ref|YP_004038161.1| - 0.0011 18.7 26.9 0.054 13.3 0.7 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|313117037|ref|YP_004038161.1| - 0.0013 19.0 20.9 0.037 14.3 0.1 4.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313117037|ref|YP_004038161.1| - 0.0062 16.5 18.7 0.014 15.4 5.4 3.7 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|313117037|ref|YP_004038161.1| - 0.0092 16.5 15.1 0.49 10.9 0.1 3.8 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|313117037|ref|YP_004038161.1| - 0.015 15.7 5.9 0.015 15.7 4.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|313117037|ref|YP_004038161.1| - 0.063 13.7 0.9 0.063 13.7 0.6 3.6 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|313117037|ref|YP_004038161.1| - 0.12 12.7 0.1 0.12 12.7 0.1 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|313117037|ref|YP_004038161.1| - 0.94 9.9 31.2 0.083 13.2 1.3 4.4 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|313117037|ref|YP_004038161.1| - 9.2 7.1 27.8 24 5.7 8.1 4.4 3 2 1 4 4 4 0 4Fe-4S double cluster binding domain EB_dh PF09459.5 gi|313117038|ref|YP_004038162.1| - 1.9e-26 93.1 8.2 1.5e-24 86.8 5.7 2.6 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.10 gi|313117039|ref|YP_004038163.1| - 2.6e-08 33.8 2.4 8e-08 32.2 0.4 2.6 1 1 1 2 2 2 1 Nitrate reductase delta subunit CcoS PF03597.10 gi|313117040|ref|YP_004038164.1| - 0.016 14.6 0.6 0.016 14.6 0.4 3.5 4 1 0 4 4 4 0 Cytochrome oxidase maturation protein cbb3-type HEAT_2 PF13646.1 gi|313117041|ref|YP_004038165.1| - 2.6e-26 91.7 26.3 9.5e-15 54.6 3.1 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|313117041|ref|YP_004038165.1| - 1.3e-10 40.4 13.1 0.00016 21.4 0.0 5.8 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.1 gi|313117041|ref|YP_004038165.1| - 1.2e-05 25.5 25.2 0.066 13.7 0.7 5.8 3 2 3 6 6 6 4 HEAT-like repeat HEAT_PBS PF03130.11 gi|313117041|ref|YP_004038165.1| - 0.0031 17.8 16.6 0.97 10.0 0.1 5.6 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|313117041|ref|YP_004038165.1| - 0.042 14.2 0.0 5.9 7.3 0.0 2.7 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region ParA PF10609.4 gi|313117042|ref|YP_004038166.1| - 2.3e-26 91.4 0.1 4.1e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|313117042|ref|YP_004038166.1| - 1.7e-18 66.7 0.1 3.5e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2249 PF10006.4 gi|313117042|ref|YP_004038166.1| - 4.5e-16 58.1 0.1 1.2e-15 56.8 0.1 1.8 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF59 PF01883.14 gi|313117042|ref|YP_004038166.1| - 6.7e-11 42.0 4.7 6.7e-11 42.0 3.3 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|313117042|ref|YP_004038166.1| - 2.8e-05 24.1 0.0 0.00013 21.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|313117042|ref|YP_004038166.1| - 4e-05 23.3 0.7 0.005 16.4 0.0 2.5 3 0 0 3 3 3 1 AAA domain ArsA_ATPase PF02374.10 gi|313117042|ref|YP_004038166.1| - 0.00091 18.3 2.4 0.26 10.3 1.3 2.7 2 1 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.6 gi|313117042|ref|YP_004038166.1| - 0.0046 16.0 0.1 0.0084 15.2 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|313117042|ref|YP_004038166.1| - 0.059 12.7 3.1 0.19 11.1 0.2 2.4 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|313117042|ref|YP_004038166.1| - 0.097 11.7 0.1 0.25 10.4 0.1 1.7 1 0 0 1 1 1 0 ATPase MipZ MFS_1 PF07690.11 gi|313117043|ref|YP_004038167.1| - 7.5e-39 133.4 49.8 7.7e-36 123.5 23.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|313117043|ref|YP_004038167.1| - 2.4e-05 23.0 10.0 0.00019 20.1 2.0 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|313117043|ref|YP_004038167.1| - 3.1e-05 23.6 17.6 0.023 14.4 0.1 4.0 4 1 0 4 4 4 3 MFS_1 like family OATP PF03137.15 gi|313117043|ref|YP_004038167.1| - 0.0017 16.4 0.1 0.0017 16.4 0.0 2.6 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.8 gi|313117043|ref|YP_004038167.1| - 0.037 12.1 24.2 0.018 13.1 10.2 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector GFO_IDH_MocA PF01408.17 gi|313117044|ref|YP_004038168.1| - 7.3e-25 87.8 0.0 1.2e-24 87.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|313117044|ref|YP_004038168.1| - 1.3e-06 28.1 0.0 2.3e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|313117044|ref|YP_004038168.1| - 0.094 13.1 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent BPD_transp_1 PF00528.17 gi|313117045|ref|YP_004038169.1| - 1.6e-31 109.2 7.1 1.6e-31 109.2 4.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313117045|ref|YP_004038169.1| - 3.8e-05 22.9 0.8 9.7e-05 21.6 0.6 1.7 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|313117046|ref|YP_004038170.1| - 3.5e-40 137.4 7.3 3.5e-40 137.4 5.1 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|313117047|ref|YP_004038171.1| - 2.8e-64 215.4 0.0 8.8e-31 107.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|313117047|ref|YP_004038171.1| - 1.2e-37 128.0 1.9 3.3e-18 65.7 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117047|ref|YP_004038171.1| - 1.3e-22 81.1 3.8 7.5e-10 39.2 0.0 4.1 2 2 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|313117047|ref|YP_004038171.1| - 5.6e-17 61.7 0.3 7.4e-08 31.8 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|313117047|ref|YP_004038171.1| - 9.1e-09 35.5 1.5 0.0032 17.4 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|313117047|ref|YP_004038171.1| - 5.2e-08 32.6 0.0 0.016 14.6 0.1 2.9 2 2 1 3 3 3 2 AAA-like domain SbcCD_C PF13558.1 gi|313117047|ref|YP_004038171.1| - 1.2e-07 31.5 0.1 0.042 13.7 0.0 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|313117047|ref|YP_004038171.1| - 2.5e-07 30.1 1.0 0.018 14.5 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313117047|ref|YP_004038171.1| - 3.1e-07 30.5 4.1 0.021 14.9 0.5 3.8 2 2 0 2 2 2 2 AAA domain MobB PF03205.9 gi|313117047|ref|YP_004038171.1| - 8.8e-07 28.7 0.1 0.02 14.5 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|313117047|ref|YP_004038171.1| - 1.9e-06 27.1 1.4 0.0087 15.2 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313117047|ref|YP_004038171.1| - 2.5e-06 27.0 0.3 0.011 15.1 0.0 3.7 4 0 0 4 4 4 1 AAA domain ATP-synt_ab PF00006.20 gi|313117047|ref|YP_004038171.1| - 3e-06 26.9 0.0 0.00091 18.7 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|313117047|ref|YP_004038171.1| - 2.9e-05 23.7 3.2 0.58 9.7 0.0 3.5 3 0 0 3 3 3 2 NACHT domain DUF87 PF01935.12 gi|313117047|ref|YP_004038171.1| - 4.1e-05 23.5 0.9 0.18 11.5 0.1 2.6 2 0 0 2 2 2 2 Domain of unknown function DUF87 AAA_15 PF13175.1 gi|313117047|ref|YP_004038171.1| - 0.00012 21.2 0.4 0.028 13.4 0.0 3.4 4 0 0 4 4 4 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|313117047|ref|YP_004038171.1| - 0.00018 21.0 0.2 4.5 6.6 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|313117047|ref|YP_004038171.1| - 0.00024 19.7 0.9 1.5 7.1 0.0 3.7 4 0 0 4 4 4 1 AAA domain AAA_18 PF13238.1 gi|313117047|ref|YP_004038171.1| - 0.00034 20.9 0.1 0.92 9.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|313117047|ref|YP_004038171.1| - 0.00035 20.1 0.1 0.89 8.9 0.0 2.9 3 0 0 3 3 3 2 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|313117047|ref|YP_004038171.1| - 0.00081 18.6 0.2 0.8 8.8 0.0 3.4 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|313117047|ref|YP_004038171.1| - 0.00084 20.1 0.1 0.91 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|313117047|ref|YP_004038171.1| - 0.0009 18.8 0.1 0.26 10.8 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.21 gi|313117047|ref|YP_004038171.1| - 0.0026 17.2 2.3 3.4 7.1 0.0 3.6 4 0 0 4 4 4 0 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|313117047|ref|YP_004038171.1| - 0.0035 17.3 0.1 2.8 7.9 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|313117047|ref|YP_004038171.1| - 0.0037 17.4 0.3 3.7 7.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|313117047|ref|YP_004038171.1| - 0.0046 16.6 1.9 2.7 7.7 0.0 3.5 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313117047|ref|YP_004038171.1| - 0.0052 16.9 0.0 6.1 7.0 0.0 2.9 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|313117047|ref|YP_004038171.1| - 0.006 15.4 0.2 2.6 6.8 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_33 PF13671.1 gi|313117047|ref|YP_004038171.1| - 0.0068 16.2 0.6 1.7 8.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|313117047|ref|YP_004038171.1| - 0.0081 15.8 0.2 0.38 10.4 0.0 2.6 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|313117047|ref|YP_004038171.1| - 0.0086 16.4 0.0 1.3 9.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|313117047|ref|YP_004038171.1| - 0.014 14.5 0.1 5.5 6.0 0.0 2.5 2 0 0 2 2 2 0 KaiC Methyltransf_32 PF13679.1 gi|313117047|ref|YP_004038171.1| - 0.017 14.7 0.1 0.075 12.7 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain CbiA PF01656.18 gi|313117047|ref|YP_004038171.1| - 0.019 14.3 1.4 0.16 11.3 0.1 2.7 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|313117047|ref|YP_004038171.1| - 0.031 13.9 0.7 0.45 10.1 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase Hpr_kinase_C PF07475.7 gi|313117047|ref|YP_004038171.1| - 0.045 13.0 1.1 6.1 6.1 0.0 2.5 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Miro PF08477.8 gi|313117047|ref|YP_004038171.1| - 0.049 14.1 0.0 10 6.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein DUF2075 PF09848.4 gi|313117047|ref|YP_004038171.1| - 0.049 12.5 0.0 1.9 7.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) tRNA_lig_kinase PF08303.6 gi|313117047|ref|YP_004038171.1| - 0.059 13.2 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 tRNA ligase kinase domain Septin PF00735.13 gi|313117047|ref|YP_004038171.1| - 0.06 12.3 0.3 2.2 7.2 0.0 2.2 2 0 0 2 2 2 0 Septin T2SE PF00437.15 gi|313117047|ref|YP_004038171.1| - 0.065 12.1 0.2 0.89 8.3 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein TIP49 PF06068.8 gi|313117047|ref|YP_004038171.1| - 0.071 11.8 0.0 0.14 10.8 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus AAA_19 PF13245.1 gi|313117047|ref|YP_004038171.1| - 0.14 11.8 0.6 3.8 7.3 0.0 3.2 4 0 0 4 4 2 0 Part of AAA domain Kazal_1 PF00050.16 gi|313117047|ref|YP_004038171.1| - 0.54 10.3 3.2 2.2 8.3 0.0 2.8 3 0 0 3 3 3 0 Kazal-type serine protease inhibitor domain SBP_bac_5 PF00496.17 gi|313117048|ref|YP_004038172.1| - 1.2e-75 254.7 1.2 1.3e-75 254.5 0.5 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle IclR PF01614.13 gi|313117049|ref|YP_004038173.1| - 2.4e-29 101.6 0.0 3.6e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117049|ref|YP_004038173.1| - 1.8e-08 33.8 0.0 4.8e-08 32.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117049|ref|YP_004038173.1| - 5e-08 32.4 0.0 1.9e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313117049|ref|YP_004038173.1| - 7.4e-07 28.8 0.0 2.2e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|313117049|ref|YP_004038173.1| - 4.7e-06 26.2 0.0 2.1e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313117049|ref|YP_004038173.1| - 4.4e-05 23.0 0.0 9.8e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313117049|ref|YP_004038173.1| - 5.5e-05 22.4 0.0 0.00024 20.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|313117049|ref|YP_004038173.1| - 6.4e-05 22.5 0.0 0.00024 20.6 0.0 2.1 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313117049|ref|YP_004038173.1| - 6.9e-05 22.4 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|313117049|ref|YP_004038173.1| - 0.0026 17.7 0.2 0.017 15.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|313117049|ref|YP_004038173.1| - 0.0037 17.1 0.0 0.0099 15.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.18 gi|313117049|ref|YP_004038173.1| - 0.012 15.2 0.0 0.042 13.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_22 PF13309.1 gi|313117049|ref|YP_004038173.1| - 0.045 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.2 gi|313117049|ref|YP_004038173.1| - 0.051 13.8 0.0 0.39 10.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|313117049|ref|YP_004038173.1| - 0.058 12.9 0.1 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_45 PF14947.1 gi|313117049|ref|YP_004038173.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|313117049|ref|YP_004038173.1| - 0.11 12.1 0.0 0.47 10.1 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_27 PF13463.1 gi|313117049|ref|YP_004038173.1| - 0.12 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain z-alpha PF02295.12 gi|313117049|ref|YP_004038173.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DAO PF01266.19 gi|313117050|ref|YP_004038174.1| - 2.1e-59 201.2 0.0 2.4e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|313117050|ref|YP_004038174.1| - 0.00054 20.0 0.6 0.017 15.2 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|313117050|ref|YP_004038174.1| - 0.00076 19.4 0.0 0.16 11.8 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|313117050|ref|YP_004038174.1| - 0.0029 16.1 0.0 0.13 10.7 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein ThiF PF00899.16 gi|313117050|ref|YP_004038174.1| - 0.053 13.3 0.2 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 ThiF family ApbA PF02558.11 gi|313117050|ref|YP_004038174.1| - 0.14 11.6 0.3 0.23 10.8 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|313117050|ref|YP_004038174.1| - 0.16 11.0 0.2 0.29 10.1 0.1 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.1 gi|313117050|ref|YP_004038174.1| - 0.36 10.5 4.3 0.48 10.1 0.7 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding TPP_enzyme_C PF02775.16 gi|313117051|ref|YP_004038175.1| - 8.1e-33 113.1 0.9 2e-32 111.8 0.6 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|313117051|ref|YP_004038175.1| - 9.9e-33 112.7 0.7 2.4e-32 111.5 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.13 gi|313117051|ref|YP_004038175.1| - 1.8e-30 105.6 0.1 7.4e-29 100.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|313117051|ref|YP_004038175.1| - 0.2 10.5 0.1 0.45 9.3 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase CO_dh PF02552.11 gi|313117051|ref|YP_004038175.1| - 0.2 11.1 0.0 0.37 10.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Epimerase PF01370.16 gi|313117052|ref|YP_004038176.1| - 2.8e-43 148.0 0.4 3.6e-43 147.6 0.3 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313117052|ref|YP_004038176.1| - 1e-22 80.2 0.0 1.3e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|313117052|ref|YP_004038176.1| - 2e-17 63.0 0.7 2.8e-17 62.5 0.5 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|313117052|ref|YP_004038176.1| - 1.5e-12 47.0 0.0 8.2e-11 41.3 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313117052|ref|YP_004038176.1| - 6.1e-11 42.6 0.4 8.5e-11 42.1 0.3 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|313117052|ref|YP_004038176.1| - 1.1e-10 40.9 1.1 3.4e-09 35.9 0.8 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|313117052|ref|YP_004038176.1| - 6.6e-10 39.1 1.5 1.3e-09 38.1 1.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313117052|ref|YP_004038176.1| - 5.8e-08 32.5 0.8 1.4e-07 31.3 0.5 1.6 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|313117052|ref|YP_004038176.1| - 4.6e-06 26.0 0.3 8e-06 25.2 0.2 1.4 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|313117052|ref|YP_004038176.1| - 0.063 12.4 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|313117052|ref|YP_004038176.1| - 0.083 12.5 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HD PF01966.17 gi|313117053|ref|YP_004038177.1| - 2.6e-10 40.3 0.4 4.5e-10 39.5 0.2 1.3 1 0 0 1 1 1 1 HD domain EthD PF07110.6 gi|313117054|ref|YP_004038178.1| - 7.8e-24 84.4 11.1 2e-12 47.8 0.5 3.9 2 2 0 2 2 2 2 EthD domain DUF4543 PF15076.1 gi|313117054|ref|YP_004038178.1| - 0.0031 17.5 0.9 0.24 11.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4543) ABM PF03992.11 gi|313117054|ref|YP_004038178.1| - 0.021 14.8 1.0 7.2 6.7 0.1 3.0 3 0 0 3 3 3 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.19 gi|313117055|ref|YP_004038179.1| - 4.1e-27 95.1 0.1 6.2e-27 94.5 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|313117055|ref|YP_004038179.1| - 0.00022 21.7 0.0 0.00039 20.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF433 PF04255.9 gi|313117055|ref|YP_004038179.1| - 0.018 14.4 0.0 0.058 12.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Bac_luciferase PF00296.15 gi|313117056|ref|YP_004038180.1| - 6.7e-61 206.0 0.1 7.6e-61 205.9 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Transket_pyr PF02779.19 gi|313117057|ref|YP_004038181.1| - 6e-48 162.6 0.0 8.2e-48 162.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|313117057|ref|YP_004038181.1| - 1.4e-34 118.7 0.0 2.4e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|313117058|ref|YP_004038182.1| - 1.2e-83 280.2 0.0 1.5e-83 280.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|313117058|ref|YP_004038182.1| - 9.1e-09 34.5 0.2 1.5e-08 33.8 0.1 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|313117058|ref|YP_004038182.1| - 1e-08 34.5 0.0 1.7e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|313117058|ref|YP_004038182.1| - 3.3e-05 23.5 0.3 0.00019 21.0 0.2 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SNF PF00209.13 gi|313117059|ref|YP_004038183.1| - 3.2e-49 167.7 27.4 4.1e-25 88.2 6.2 2.3 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Aminotran_1_2 PF00155.16 gi|313117060|ref|YP_004038184.1| - 8.1e-59 199.3 0.0 9.1e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|313117060|ref|YP_004038184.1| - 2e-14 53.4 0.0 3.1e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|313117060|ref|YP_004038184.1| - 3.2e-08 32.7 0.0 5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|313117060|ref|YP_004038184.1| - 7.1e-08 31.9 0.0 1.9e-07 30.5 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|313117060|ref|YP_004038184.1| - 6.5e-05 21.3 0.0 9.3e-05 20.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HTH_24 PF13412.1 gi|313117061|ref|YP_004038185.1| - 2.4e-05 23.6 0.0 3.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117061|ref|YP_004038185.1| - 0.00013 21.5 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|313117061|ref|YP_004038185.1| - 0.0012 18.3 0.4 0.0022 17.4 0.3 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|313117061|ref|YP_004038185.1| - 0.0016 18.7 0.1 0.0023 18.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|313117061|ref|YP_004038185.1| - 0.0029 17.1 0.0 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313117061|ref|YP_004038185.1| - 0.0044 16.6 0.1 0.0056 16.3 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313117061|ref|YP_004038185.1| - 0.0072 16.0 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|313117061|ref|YP_004038185.1| - 0.055 12.9 0.0 0.091 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|313117061|ref|YP_004038185.1| - 0.056 13.2 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|313117061|ref|YP_004038185.1| - 0.093 12.5 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Aldedh PF00171.17 gi|313117062|ref|YP_004038186.1| - 2.3e-137 458.1 0.0 2.6e-137 457.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.13 gi|313117063|ref|YP_004038187.1| - 3.2e-33 114.1 0.2 1.2e-32 112.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117063|ref|YP_004038187.1| - 1.5e-08 34.1 0.2 3.8e-08 32.8 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313117063|ref|YP_004038187.1| - 2.4e-07 30.0 0.2 1.3e-06 27.6 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313117063|ref|YP_004038187.1| - 3e-06 26.9 0.2 3e-06 26.9 0.2 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313117063|ref|YP_004038187.1| - 4.6e-06 26.1 0.4 3e-05 23.5 0.2 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|313117063|ref|YP_004038187.1| - 6.6e-06 25.7 0.2 1.4e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117063|ref|YP_004038187.1| - 2.1e-05 24.1 0.0 7.9e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313117063|ref|YP_004038187.1| - 4.1e-05 23.2 0.1 8.7e-05 22.1 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117063|ref|YP_004038187.1| - 0.001 18.7 0.0 0.0025 17.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|313117063|ref|YP_004038187.1| - 0.0041 16.6 0.1 0.01 15.3 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|313117063|ref|YP_004038187.1| - 0.0052 16.2 0.6 0.029 13.8 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_32 PF13565.1 gi|313117063|ref|YP_004038187.1| - 0.007 17.1 1.0 0.042 14.6 0.2 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Sulfolobus_pRN PF05584.6 gi|313117063|ref|YP_004038187.1| - 0.019 14.9 0.2 0.19 11.7 0.0 2.4 2 1 1 3 3 3 0 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|313117063|ref|YP_004038187.1| - 0.032 13.8 0.0 4.4 7.1 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain HTH_40 PF14493.1 gi|313117063|ref|YP_004038187.1| - 0.062 13.5 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|313117063|ref|YP_004038187.1| - 0.071 13.1 0.0 0.54 10.3 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|313117063|ref|YP_004038187.1| - 0.081 12.5 0.1 0.58 9.7 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Rnk_N PF14760.1 gi|313117063|ref|YP_004038187.1| - 0.53 10.4 4.9 1.9 8.6 0.3 2.7 2 0 0 2 2 2 0 Rnk N-terminus F420_oxidored PF03807.12 gi|313117064|ref|YP_004038188.1| - 1.1e-18 67.4 0.5 1.9e-18 66.6 0.3 1.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|313117064|ref|YP_004038188.1| - 5.7e-05 22.8 0.2 0.00012 21.8 0.1 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|313117064|ref|YP_004038188.1| - 0.00024 20.0 0.0 0.00036 19.4 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase ApbA PF02558.11 gi|313117064|ref|YP_004038188.1| - 0.00051 19.4 0.1 0.00078 18.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|313117064|ref|YP_004038188.1| - 0.0026 18.0 0.1 0.0052 17.0 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313117064|ref|YP_004038188.1| - 0.016 15.2 1.3 0.016 15.2 0.9 1.8 1 1 0 2 2 2 0 NADH(P)-binding adh_short PF00106.20 gi|313117064|ref|YP_004038188.1| - 0.065 13.1 4.1 0.62 9.9 2.4 2.6 1 1 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.8 gi|313117064|ref|YP_004038188.1| - 0.11 11.7 0.2 0.18 11.0 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family Usp PF00582.21 gi|313117064|ref|YP_004038188.1| - 0.11 12.6 1.7 0.71 10.0 1.2 2.2 1 1 0 1 1 1 0 Universal stress protein family KR PF08659.5 gi|313117064|ref|YP_004038188.1| - 0.15 11.7 0.4 0.47 10.0 0.1 2.0 2 1 0 2 2 2 0 KR domain zf-ISL3 PF14690.1 gi|313117065|ref|YP_004038189.1| - 0.016 15.2 0.9 0.026 14.5 0.2 1.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FCS PF06467.9 gi|313117065|ref|YP_004038189.1| - 0.058 13.0 7.3 0.14 11.7 5.1 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Glyoxalase_2 PF12681.2 gi|313117065|ref|YP_004038189.1| - 0.15 12.7 0.0 0.18 12.4 0.0 1.1 1 0 0 1 1 1 0 Glyoxalase-like domain Arc_trans_TRASH PF08394.5 gi|313117065|ref|YP_004038189.1| - 1.7 8.9 8.4 16 5.7 5.8 2.3 1 1 0 1 1 1 0 Archaeal TRASH domain IMPDH PF00478.20 gi|313117067|ref|YP_004038191.1| - 7.4e-114 380.2 2.7 1.1e-113 379.7 1.9 1.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|313117067|ref|YP_004038191.1| - 7.6e-08 31.8 0.5 8.6e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.13 gi|313117067|ref|YP_004038191.1| - 2.3e-07 30.0 6.4 5.8e-07 28.6 4.4 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|313117067|ref|YP_004038191.1| - 5.3e-06 25.8 16.0 0.0012 18.0 11.1 2.7 1 1 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|313117067|ref|YP_004038191.1| - 0.001 18.0 4.1 0.0026 16.7 2.5 1.9 2 0 0 2 2 2 1 Conserved region in glutamate synthase TMP-TENI PF02581.12 gi|313117067|ref|YP_004038191.1| - 0.0032 16.5 2.2 0.013 14.6 1.2 2.0 1 1 1 2 2 2 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|313117067|ref|YP_004038191.1| - 0.0047 15.9 1.0 0.011 14.7 0.7 1.6 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|313117067|ref|YP_004038191.1| - 0.057 12.6 2.7 0.13 11.5 0.4 2.2 2 0 0 2 2 2 0 PcrB family Aldolase PF01081.14 gi|313117067|ref|YP_004038191.1| - 0.076 12.1 3.1 0.099 11.7 0.5 2.0 1 1 1 2 2 2 0 KDPG and KHG aldolase ThiG PF05690.9 gi|313117067|ref|YP_004038191.1| - 0.29 10.1 5.3 0.056 12.5 0.7 1.8 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DAO PF01266.19 gi|313117068|ref|YP_004038192.1| - 4.9e-64 216.4 0.1 5.6e-64 216.2 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|313117068|ref|YP_004038192.1| - 3.3e-07 29.1 0.4 0.00084 17.9 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|313117068|ref|YP_004038192.1| - 5.6e-07 29.8 0.5 3.9e-05 23.7 0.3 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|313117068|ref|YP_004038192.1| - 7.1e-06 25.9 0.0 2.4e-05 24.2 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|313117068|ref|YP_004038192.1| - 1.7e-05 24.6 0.9 0.00096 18.9 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|313117068|ref|YP_004038192.1| - 2.6e-05 24.1 0.4 0.0017 18.2 0.1 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|313117068|ref|YP_004038192.1| - 0.00018 21.8 0.1 0.21 12.0 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|313117068|ref|YP_004038192.1| - 0.00072 18.7 0.0 0.0037 16.4 0.0 2.1 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.1 gi|313117068|ref|YP_004038192.1| - 0.0011 17.9 0.3 0.043 12.7 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|313117068|ref|YP_004038192.1| - 0.0015 17.5 0.2 0.21 10.4 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Mqo PF06039.10 gi|313117068|ref|YP_004038192.1| - 0.0027 15.9 0.0 0.75 7.8 0.0 2.1 2 0 0 2 2 2 2 Malate:quinone oxidoreductase (Mqo) FAD_binding_2 PF00890.19 gi|313117068|ref|YP_004038192.1| - 0.0035 16.2 0.8 0.01 14.7 0.5 1.7 1 1 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|313117068|ref|YP_004038192.1| - 0.0041 17.3 0.0 0.011 15.9 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|313117068|ref|YP_004038192.1| - 0.037 13.0 0.1 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain B12-binding PF02310.14 gi|313117068|ref|YP_004038192.1| - 0.18 11.7 0.8 0.46 10.3 0.1 1.9 2 0 0 2 2 2 0 B12 binding domain Acyl-CoA_dh_1 PF00441.19 gi|313117069|ref|YP_004038193.1| - 7.5e-30 104.0 1.4 1.1e-29 103.4 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313117069|ref|YP_004038193.1| - 1.6e-24 86.6 0.1 3.8e-24 85.4 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313117069|ref|YP_004038193.1| - 1.2e-20 72.7 0.0 3.2e-20 71.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|313117069|ref|YP_004038193.1| - 4.4e-12 46.3 1.2 6.3e-12 45.8 0.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AcetylCoA_hyd_C PF13336.1 gi|313117070|ref|YP_004038194.1| - 2.3e-38 131.2 0.0 3.3e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|313117070|ref|YP_004038194.1| - 2.7e-10 40.3 0.0 5.8e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.7 gi|313117070|ref|YP_004038194.1| - 7.1e-05 21.6 0.3 0.00017 20.4 0.2 1.6 1 1 0 1 1 1 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.18 gi|313117070|ref|YP_004038194.1| - 0.00096 18.3 0.1 0.002 17.3 0.0 1.6 2 0 0 2 2 2 1 Coenzyme A transferase DUF2204 PF09970.4 gi|313117070|ref|YP_004038194.1| - 0.072 12.5 0.1 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) DctM PF06808.7 gi|313117072|ref|YP_004038196.1| - 2e-53 181.4 46.6 2e-53 181.4 32.3 1.9 1 1 1 2 2 2 1 DctM-like transporters DUF3278 PF11683.3 gi|313117072|ref|YP_004038196.1| - 0.045 13.7 4.8 0.43 10.5 0.0 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3278) NMT1 PF09084.6 gi|313117073|ref|YP_004038197.1| - 0.0016 18.0 0.0 0.0044 16.6 0.0 1.6 1 1 1 2 2 2 1 NMT1/THI5 like UCR_Fe-S_N PF10399.4 gi|313117073|ref|YP_004038197.1| - 5.2 6.3 5.1 0.47 9.6 0.1 1.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IclR PF01614.13 gi|313117074|ref|YP_004038198.1| - 5.7e-32 110.1 0.0 1.7e-31 108.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117074|ref|YP_004038198.1| - 1.4e-10 40.5 0.1 4.9e-10 38.8 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313117074|ref|YP_004038198.1| - 1.3e-07 31.3 0.0 3.3e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313117074|ref|YP_004038198.1| - 3.8e-07 29.6 0.1 8.7e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|313117074|ref|YP_004038198.1| - 4.8e-07 29.0 0.0 1.1e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117074|ref|YP_004038198.1| - 4.9e-05 22.9 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313117074|ref|YP_004038198.1| - 0.00022 20.8 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313117074|ref|YP_004038198.1| - 0.00028 20.4 0.0 0.00066 19.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313117074|ref|YP_004038198.1| - 0.00074 19.1 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|313117074|ref|YP_004038198.1| - 0.0087 15.9 0.0 0.046 13.6 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313117074|ref|YP_004038198.1| - 0.0099 15.5 0.1 0.046 13.3 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_36 PF13730.1 gi|313117074|ref|YP_004038198.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|313117074|ref|YP_004038198.1| - 0.018 15.3 0.0 1 9.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|313117074|ref|YP_004038198.1| - 0.02 14.4 0.0 0.053 13.0 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|313117074|ref|YP_004038198.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|313117074|ref|YP_004038198.1| - 0.077 13.2 0.1 0.5 10.6 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|313117074|ref|YP_004038198.1| - 0.11 12.1 0.0 0.38 10.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|313117074|ref|YP_004038198.1| - 0.13 11.5 0.0 0.28 10.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|313117075|ref|YP_004038199.1| - 2.1e-12 46.6 0.1 4.4e-12 45.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313117075|ref|YP_004038199.1| - 0.00028 20.1 0.1 0.00048 19.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313117075|ref|YP_004038199.1| - 0.00029 20.4 0.0 0.00061 19.4 0.0 1.5 1 0 0 1 1 1 1 MarR family CAAD PF14159.1 gi|313117075|ref|YP_004038199.1| - 0.0083 15.7 0.0 0.023 14.2 0.0 1.7 1 0 0 1 1 1 1 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Phage_connect_1 PF05135.8 gi|313117075|ref|YP_004038199.1| - 0.05 13.7 0.4 1 9.5 0.1 2.8 3 0 0 3 3 3 0 Phage gp6-like head-tail connector protein HTH_5 PF01022.15 gi|313117075|ref|YP_004038199.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3869 PF12985.2 gi|313117076|ref|YP_004038200.1| - 2 8.8 8.3 0.58 10.6 0.3 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3869) MarR PF01047.17 gi|313117077|ref|YP_004038201.1| - 7.6e-08 31.9 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|313117077|ref|YP_004038201.1| - 1.2e-07 31.2 0.2 2.5e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117077|ref|YP_004038201.1| - 5.7e-07 29.1 0.4 9.2e-07 28.4 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|313117077|ref|YP_004038201.1| - 3e-06 26.7 0.2 5.1e-06 25.9 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|313117077|ref|YP_004038201.1| - 6e-06 25.5 0.0 1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313117077|ref|YP_004038201.1| - 0.00037 20.2 0.2 0.00061 19.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|313117077|ref|YP_004038201.1| - 0.00047 20.4 0.1 0.0011 19.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|313117077|ref|YP_004038201.1| - 0.00084 18.9 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|313117077|ref|YP_004038201.1| - 0.0012 18.6 0.2 0.0022 17.9 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|313117077|ref|YP_004038201.1| - 0.0024 17.2 0.3 0.004 16.5 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|313117077|ref|YP_004038201.1| - 0.003 17.0 0.5 0.0062 16.0 0.1 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain RepL PF05732.6 gi|313117077|ref|YP_004038201.1| - 0.0095 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) Trp_oprn_chp PF09534.5 gi|313117077|ref|YP_004038201.1| - 0.013 15.0 1.2 0.017 14.7 0.3 1.5 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) COX15-CtaA PF02628.10 gi|313117077|ref|YP_004038201.1| - 0.016 14.1 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein HTH_11 PF08279.7 gi|313117077|ref|YP_004038201.1| - 0.022 14.4 0.2 0.057 13.0 0.1 1.7 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.1 gi|313117077|ref|YP_004038201.1| - 0.025 14.1 0.1 0.053 13.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Trp_repressor PF01371.14 gi|313117077|ref|YP_004038201.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein Trep_Strep PF09605.5 gi|313117077|ref|YP_004038201.1| - 0.042 13.5 1.5 0.073 12.7 1.0 1.3 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) HTH_Crp_2 PF13545.1 gi|313117077|ref|YP_004038201.1| - 0.046 13.5 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|313117077|ref|YP_004038201.1| - 0.056 13.5 0.3 0.14 12.2 0.2 1.7 1 1 0 1 1 1 0 Penicillinase repressor RNA_pol_Rpc34 PF05158.7 gi|313117077|ref|YP_004038201.1| - 0.081 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit 3HCDH_N PF02737.13 gi|313117079|ref|YP_004038203.1| - 7.8e-62 208.1 0.1 1.3e-61 207.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|313117079|ref|YP_004038203.1| - 1.7e-55 187.8 0.0 2.6e-55 187.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|313117079|ref|YP_004038203.1| - 3.4e-45 152.3 0.3 5.6e-22 77.9 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_C PF13766.1 gi|313117079|ref|YP_004038203.1| - 0.00052 20.1 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|313117079|ref|YP_004038203.1| - 0.01 15.6 0.1 0.026 14.3 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|313117079|ref|YP_004038203.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|313117079|ref|YP_004038203.1| - 0.18 12.2 0.4 0.6 10.5 0.3 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent SCP2 PF02036.12 gi|313117080|ref|YP_004038204.1| - 6.6e-10 39.1 0.0 7.9e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family CBM_10 PF02013.11 gi|313117080|ref|YP_004038204.1| - 0.71 10.1 5.2 3.5 7.9 0.2 2.4 2 0 0 2 2 2 0 Cellulose or protein binding domain ADH_zinc_N PF00107.21 gi|313117081|ref|YP_004038205.1| - 9.8e-26 89.8 0.1 1.4e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313117081|ref|YP_004038205.1| - 1.6e-25 88.9 0.1 3.9e-25 87.7 0.1 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|313117081|ref|YP_004038205.1| - 0.022 14.3 0.1 0.04 13.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|313117081|ref|YP_004038205.1| - 0.045 13.7 0.3 0.07 13.1 0.2 1.3 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_11 PF08241.7 gi|313117081|ref|YP_004038205.1| - 0.046 14.1 0.0 0.091 13.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Urocanase PF01175.13 gi|313117081|ref|YP_004038205.1| - 0.091 10.7 0.1 0.12 10.3 0.1 1.1 1 0 0 1 1 1 0 Urocanase ELFV_dehydrog PF00208.16 gi|313117081|ref|YP_004038205.1| - 0.1 12.1 0.2 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|313117081|ref|YP_004038205.1| - 0.11 11.6 0.1 0.17 10.9 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldedh PF00171.17 gi|313117082|ref|YP_004038206.1| - 1.1e-158 528.4 0.0 1.2e-158 528.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|313117082|ref|YP_004038206.1| - 0.00012 21.4 0.0 0.0042 16.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) MFS_1 PF07690.11 gi|313117083|ref|YP_004038207.1| - 3.7e-38 131.1 61.9 1.2e-30 106.4 26.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|313117083|ref|YP_004038207.1| - 3.7e-08 32.3 4.0 3.7e-08 32.3 2.7 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Alkyl_sulf_dimr PF14863.1 gi|313117084|ref|YP_004038208.1| - 1e-27 97.0 0.1 1.8e-27 96.2 0.1 1.4 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.22 gi|313117084|ref|YP_004038208.1| - 2.5e-21 76.2 0.4 6.1e-21 74.9 0.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313117084|ref|YP_004038208.1| - 0.00015 21.3 2.3 0.00067 19.2 1.6 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_10 PF04967.7 gi|313117085|ref|YP_004038209.1| - 8.7e-16 57.2 0.0 1.3e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|313117085|ref|YP_004038209.1| - 5.5e-06 25.5 0.3 8.9e-06 24.9 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_4 PF13613.1 gi|313117085|ref|YP_004038209.1| - 0.0029 17.0 0.0 0.0059 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4_2 PF08281.7 gi|313117085|ref|YP_004038209.1| - 0.022 14.2 0.5 0.38 10.2 0.1 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 SgrR_N PF12793.2 gi|313117085|ref|YP_004038209.1| - 0.05 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term GtrA PF04138.9 gi|313117086|ref|YP_004038210.1| - 1.4e-20 73.4 11.3 1.6e-20 73.1 7.9 1.1 1 0 0 1 1 1 1 GtrA-like protein PMT_2 PF13231.1 gi|313117087|ref|YP_004038211.1| - 4e-13 49.5 9.8 4e-13 49.5 6.8 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|313117087|ref|YP_004038211.1| - 1e-07 31.5 9.5 2e-07 30.6 6.6 1.4 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_18 PF00704.23 gi|313117088|ref|YP_004038212.1| - 4.2e-97 325.6 10.6 5.7e-97 325.2 7.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.15 gi|313117088|ref|YP_004038212.1| - 1.1e-18 66.7 5.6 1.1e-18 66.7 3.9 2.1 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.9 gi|313117088|ref|YP_004038212.1| - 6.1e-15 54.5 6.5 6.1e-15 54.5 4.5 2.5 2 0 0 2 2 2 1 Carbohydrate binding domain I-set PF07679.11 gi|313117088|ref|YP_004038212.1| - 0.035 13.9 0.0 0.077 12.8 0.0 1.6 1 0 0 1 1 1 0 Immunoglobulin I-set domain ig PF00047.20 gi|313117088|ref|YP_004038212.1| - 0.045 13.8 0.1 0.92 9.6 0.2 2.7 2 0 0 2 2 2 0 Immunoglobulin domain Glyco_hydro_18 PF00704.23 gi|313117089|ref|YP_004038213.1| - 8.5e-77 258.9 2.2 1.4e-76 258.2 1.5 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.15 gi|313117089|ref|YP_004038213.1| - 6.8e-23 80.2 7.2 3e-22 78.1 5.0 2.2 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313117089|ref|YP_004038213.1| - 6.3e-15 54.4 6.8 2.5e-14 52.5 4.7 2.1 1 0 0 1 1 1 1 Carbohydrate binding domain PKD PF00801.15 gi|313117090|ref|YP_004038214.1| - 9.5e-16 57.3 4.6 2.3e-15 56.1 3.2 1.6 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313117090|ref|YP_004038214.1| - 4.2e-13 48.6 5.5 1.2e-12 47.2 3.8 1.8 1 0 0 1 1 1 1 Carbohydrate binding domain Big_3_4 PF13754.1 gi|313117090|ref|YP_004038214.1| - 4.2e-05 23.7 12.2 4.9e-05 23.5 7.0 2.2 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) PKD PF00801.15 gi|313117091|ref|YP_004038215.1| - 3.4e-14 52.3 6.8 1.4e-13 50.4 4.7 2.1 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313117091|ref|YP_004038215.1| - 2.3e-10 39.8 1.2 8.5e-10 38.0 0.8 2.0 1 0 0 1 1 1 1 Carbohydrate binding domain IclR PF01614.13 gi|313117092|ref|YP_004038216.1| - 2.8e-21 75.5 0.3 3.3e-20 72.0 0.1 2.3 3 0 0 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117092|ref|YP_004038216.1| - 2.3e-12 46.2 0.1 9.3e-12 44.3 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117092|ref|YP_004038216.1| - 4.7e-07 29.3 0.0 1.1e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313117092|ref|YP_004038216.1| - 8.5e-06 25.4 0.0 2.4e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313117092|ref|YP_004038216.1| - 3.3e-05 23.4 0.0 0.00011 21.7 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|313117092|ref|YP_004038216.1| - 0.00033 20.2 0.0 0.00077 19.0 0.0 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117092|ref|YP_004038216.1| - 0.0012 18.4 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|313117092|ref|YP_004038216.1| - 0.033 14.3 0.0 0.082 13.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|313117092|ref|YP_004038216.1| - 0.034 13.5 0.0 0.086 12.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|313117092|ref|YP_004038216.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|313117092|ref|YP_004038216.1| - 0.12 12.5 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain His_Phos_1 PF00300.17 gi|313117093|ref|YP_004038217.1| - 4.8e-22 78.7 0.0 5.8e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ComA PF02679.10 gi|313117094|ref|YP_004038218.1| - 3.3e-79 265.3 0.0 3.7e-79 265.1 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) MmgE_PrpD PF03972.9 gi|313117095|ref|YP_004038219.1| - 2.7e-105 352.1 0.4 3e-105 351.9 0.3 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Big_4 PF07532.6 gi|313117095|ref|YP_004038219.1| - 0.028 13.9 0.1 0.1 12.1 0.1 2.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 4) Rib PF08428.5 gi|313117095|ref|YP_004038219.1| - 0.062 13.0 0.7 0.75 9.5 0.1 2.7 3 0 0 3 3 3 0 Rib/alpha-like repeat Peripla_BP_2 PF01497.13 gi|313117096|ref|YP_004038220.1| - 1.1e-15 57.4 0.0 2e-15 56.6 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313117096|ref|YP_004038220.1| - 0.00063 19.5 0.4 0.0013 18.5 0.3 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Myco_19_kDa PF05481.7 gi|313117096|ref|YP_004038220.1| - 2 8.2 4.7 3.4 7.4 3.3 1.3 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen CMD PF02627.15 gi|313117097|ref|YP_004038221.1| - 5.5e-12 45.3 0.3 2.5e-10 40.0 0.1 2.1 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family Med15_fungi PF05397.7 gi|313117099|ref|YP_004038223.1| - 0.12 12.3 0.0 0.53 10.2 0.0 2.0 1 1 1 2 2 2 0 Mediator complex subunit 15 DUF2427 PF10348.4 gi|313117100|ref|YP_004038224.1| - 0.079 12.5 0.6 0.095 12.2 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF4044 PF13253.1 gi|313117100|ref|YP_004038224.1| - 1.2 8.3 5.2 2.3 7.4 3.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) OAD_gamma PF04277.8 gi|313117100|ref|YP_004038224.1| - 4.4 7.7 5.9 7.7 6.9 4.1 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain DDE_Tnp_1 PF01609.16 gi|313117101|ref|YP_004038225.1| - 1.5e-07 31.2 0.1 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain SP2 PF03014.9 gi|313117101|ref|YP_004038225.1| - 0.025 12.4 0.2 0.039 11.8 0.1 1.2 1 0 0 1 1 1 0 Structural protein 2 DUF772 PF05598.6 gi|313117101|ref|YP_004038225.1| - 0.058 13.2 0.1 0.27 11.1 0.0 2.2 1 1 0 1 1 1 0 Transposase domain (DUF772) Na_K-ATPase PF00287.13 gi|313117101|ref|YP_004038225.1| - 0.075 11.7 0.1 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain YibE_F PF07907.6 gi|313117102|ref|YP_004038226.1| - 0.021 13.9 1.4 0.022 13.9 1.0 1.0 1 0 0 1 1 1 0 YibE/F-like protein DUF485 PF04341.7 gi|313117102|ref|YP_004038226.1| - 0.12 12.0 2.4 0.14 11.8 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF485 RDD PF06271.7 gi|313117102|ref|YP_004038226.1| - 0.16 11.8 3.3 0.19 11.6 2.3 1.1 1 0 0 1 1 1 0 RDD family DUF3671 PF12420.3 gi|313117102|ref|YP_004038226.1| - 0.35 10.8 1.6 0.42 10.6 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF2892 PF11127.3 gi|313117102|ref|YP_004038226.1| - 0.47 10.3 2.7 0.59 10.0 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF2614 PF11023.3 gi|313117102|ref|YP_004038226.1| - 1 9.1 4.5 1.1 9.0 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF4083 PF13314.1 gi|313117102|ref|YP_004038226.1| - 7.2 6.5 10.1 0.74 9.6 3.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4083) DUF3960 PF13142.1 gi|313117104|ref|YP_004038228.1| - 0.021 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) H_kinase_N PF12282.3 gi|313117104|ref|YP_004038228.1| - 0.044 13.3 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Signal transduction histidine kinase UvrD-helicase PF00580.16 gi|313117106|ref|YP_004038230.1| - 2e-47 162.0 2.6 2e-47 162.0 1.8 2.8 2 2 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|313117106|ref|YP_004038230.1| - 1.2e-16 61.1 15.9 3.4e-09 36.6 0.0 4.9 2 2 1 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|313117106|ref|YP_004038230.1| - 4.7e-10 39.0 0.0 1.4e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|313117106|ref|YP_004038230.1| - 3.6e-07 29.9 0.3 2.3e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|313117106|ref|YP_004038230.1| - 1.5e-06 28.2 0.1 1.9e-05 24.7 0.1 2.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|313117106|ref|YP_004038230.1| - 0.021 14.3 0.1 12 5.3 0.0 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase Prominin PF05478.6 gi|313117106|ref|YP_004038230.1| - 2.2 5.7 3.7 1 6.7 0.4 2.1 2 0 0 2 2 2 0 Prominin Pex14_N PF04695.8 gi|313117107|ref|YP_004038231.1| - 0.018 15.0 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region PhrC_PhrF PF11131.3 gi|313117107|ref|YP_004038231.1| - 0.13 11.8 0.2 0.24 10.9 0.1 1.4 1 0 0 1 1 1 0 Rap-phr extracellular signalling bPH_2 PF03703.9 gi|313117108|ref|YP_004038232.1| - 3.3e-11 43.0 0.5 1.2e-10 41.2 0.6 1.7 2 0 0 2 2 2 1 Bacterial PH domain PalH PF08733.5 gi|313117108|ref|YP_004038232.1| - 0.014 14.3 0.2 0.018 13.8 0.2 1.1 1 0 0 1 1 1 0 PalH/RIM21 zf-dskA_traR PF01258.12 gi|313117109|ref|YP_004038233.1| - 0.03 14.0 3.5 0.95 9.2 0.8 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ISL3 PF14690.1 gi|313117109|ref|YP_004038233.1| - 0.055 13.5 2.5 5.3 7.1 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2116 PF09889.4 gi|313117109|ref|YP_004038233.1| - 0.11 12.2 5.2 0.089 12.6 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF35_N PF12172.3 gi|313117109|ref|YP_004038233.1| - 0.15 11.9 6.6 0.99 9.4 1.0 2.8 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|313117109|ref|YP_004038233.1| - 0.22 11.3 5.4 3.5 7.5 0.7 2.6 2 1 0 2 2 2 0 Double zinc ribbon Helicase_C_2 PF13307.1 gi|313117110|ref|YP_004038234.1| - 4.8e-28 98.2 0.0 1e-27 97.1 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|313117110|ref|YP_004038234.1| - 4.1e-12 45.8 0.0 1.2e-10 41.0 0.0 2.2 2 0 0 2 2 2 1 DEAD_2 DEAD PF00270.24 gi|313117110|ref|YP_004038234.1| - 0.0035 16.8 0.1 0.075 12.5 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|313117110|ref|YP_004038234.1| - 0.0082 15.9 0.2 0.024 14.4 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|313117110|ref|YP_004038234.1| - 0.01 15.0 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.24 gi|313117111|ref|YP_004038235.1| - 7.6e-31 107.0 0.0 1.3e-30 106.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313117111|ref|YP_004038235.1| - 1.8e-06 27.6 0.1 4.2e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|313117111|ref|YP_004038235.1| - 4.9e-05 23.4 0.1 0.0041 17.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|313117111|ref|YP_004038235.1| - 5e-05 23.2 0.0 0.00013 21.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|313117111|ref|YP_004038235.1| - 0.00013 21.6 0.5 0.00054 19.6 0.0 2.3 3 0 0 3 3 3 1 Part of AAA domain AAA_16 PF13191.1 gi|313117111|ref|YP_004038235.1| - 0.00021 21.3 0.0 0.00049 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|313117111|ref|YP_004038235.1| - 0.00026 20.8 0.0 0.00057 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|313117111|ref|YP_004038235.1| - 0.00035 19.6 0.2 0.02 13.8 0.1 2.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.8 gi|313117111|ref|YP_004038235.1| - 0.00045 19.0 0.0 0.0023 16.7 0.0 1.8 1 1 1 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|313117111|ref|YP_004038235.1| - 0.00078 20.2 0.0 0.0025 18.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|313117111|ref|YP_004038235.1| - 0.0022 17.0 0.0 0.0038 16.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|313117111|ref|YP_004038235.1| - 0.0027 18.0 0.4 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|313117111|ref|YP_004038235.1| - 0.0034 16.8 0.1 0.017 14.5 0.0 2.0 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_14 PF13173.1 gi|313117111|ref|YP_004038235.1| - 0.0039 17.1 0.0 0.0073 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|313117111|ref|YP_004038235.1| - 0.0041 16.5 0.0 0.012 15.0 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|313117111|ref|YP_004038235.1| - 0.009 15.5 0.0 0.031 13.7 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain SKI PF01202.17 gi|313117111|ref|YP_004038235.1| - 0.0092 15.8 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase AAA_11 PF13086.1 gi|313117111|ref|YP_004038235.1| - 0.015 14.9 1.3 0.1 12.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|313117111|ref|YP_004038235.1| - 0.017 14.3 0.0 0.034 13.2 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.12 gi|313117111|ref|YP_004038235.1| - 0.019 13.8 0.0 0.039 12.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|313117111|ref|YP_004038235.1| - 0.019 14.6 0.0 0.05 13.2 0.0 1.8 1 1 0 1 1 1 0 NACHT domain DUF815 PF05673.8 gi|313117111|ref|YP_004038235.1| - 0.021 13.7 0.0 0.042 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|313117111|ref|YP_004038235.1| - 0.021 14.7 0.0 2.7 7.9 0.0 2.6 1 1 1 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|313117111|ref|YP_004038235.1| - 0.023 14.7 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|313117111|ref|YP_004038235.1| - 0.024 14.9 0.1 0.069 13.4 0.0 1.7 2 0 0 2 2 1 0 ABC transporter RNA_helicase PF00910.17 gi|313117111|ref|YP_004038235.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase GvpD PF07088.6 gi|313117111|ref|YP_004038235.1| - 0.076 11.3 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein ADP_ribosyl_GH PF03747.9 gi|313117112|ref|YP_004038236.1| - 1.2e-64 218.8 1.9 1.2e-64 218.8 1.3 1.4 2 0 0 2 2 2 1 ADP-ribosylglycohydrolase Gly-zipper_OmpA PF13436.1 gi|313117112|ref|YP_004038236.1| - 2.5 7.7 6.7 0.11 12.1 0.4 1.8 3 0 0 3 3 3 0 Glycine-zipper containing OmpA-like membrane domain DUF4177 PF13783.1 gi|313117113|ref|YP_004038237.1| - 7.4e-06 25.4 0.1 1.7e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) RNase_H PF00075.19 gi|313117114|ref|YP_004038238.1| - 2.7e-09 37.4 0.0 3.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 RNase H SfsA PF03749.8 gi|313117115|ref|YP_004038239.1| - 5.2e-54 182.9 0.0 7.2e-54 182.5 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Herpes_TK_C PF08465.5 gi|313117116|ref|YP_004038240.1| - 0.02 14.4 0.1 0.029 13.8 0.1 1.3 1 0 0 1 1 1 0 Thymidine kinase from Herpesvirus C-terminal NTP_transf_2 PF01909.18 gi|313117117|ref|YP_004038241.1| - 2.7e-06 27.6 0.0 4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Oxidored_q1 PF00361.15 gi|313117118|ref|YP_004038242.1| - 0.038 13.2 0.9 0.057 12.6 0.6 1.3 1 1 0 1 1 1 0 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4134 PF13572.1 gi|313117118|ref|YP_004038242.1| - 0.057 13.5 0.1 0.075 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) DUF2631 PF10939.3 gi|313117118|ref|YP_004038242.1| - 0.078 12.8 0.2 9.2 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) Pox_P21 PF05313.7 gi|313117118|ref|YP_004038242.1| - 0.76 9.0 4.8 0.13 11.5 0.4 1.7 1 1 0 2 2 2 0 Poxvirus P21 membrane protein DUF2516 PF10724.4 gi|313117118|ref|YP_004038242.1| - 7.9 6.5 6.3 25 4.9 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2516) HTH_45 PF14947.1 gi|313117121|ref|YP_004038245.1| - 4.1e-07 29.7 0.2 9.4e-07 28.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|313117121|ref|YP_004038245.1| - 0.005 17.1 0.1 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313117121|ref|YP_004038245.1| - 0.02 14.5 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|313117121|ref|YP_004038245.1| - 0.03 14.2 0.2 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 Trp repressor protein MarR PF01047.17 gi|313117121|ref|YP_004038245.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family TgMIC1 PF11476.3 gi|313117123|ref|YP_004038247.1| - 0.031 13.7 0.1 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Toxoplasma gondii micronemal protein 1 TgMIC1 phiKZ_IP PF12699.2 gi|313117124|ref|YP_004038248.1| - 0.054 12.4 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins DUF972 PF06156.8 gi|313117124|ref|YP_004038248.1| - 0.08 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) ICAT PF06384.6 gi|313117124|ref|YP_004038248.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Beta-catenin-interacting protein ICAT Peripla_BP_2 PF01497.13 gi|313117128|ref|YP_004038252.1| - 1.2e-19 70.3 0.0 3e-19 69.1 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313117128|ref|YP_004038252.1| - 0.02 14.8 0.1 0.039 13.9 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF998 PF06197.8 gi|313117131|ref|YP_004038255.1| - 0.0021 17.4 5.1 0.003 16.8 3.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF423 PF04241.10 gi|313117131|ref|YP_004038255.1| - 0.04 13.8 1.3 0.043 13.7 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF423) DUF872 PF05915.7 gi|313117131|ref|YP_004038255.1| - 0.53 10.1 3.5 0.52 10.1 0.6 1.9 1 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) SdpI PF13630.1 gi|313117131|ref|YP_004038255.1| - 0.79 9.4 12.7 0.17 11.6 4.2 2.1 1 1 1 2 2 2 0 SdpI/YhfL protein family VIT1 PF01988.14 gi|313117131|ref|YP_004038255.1| - 7.2 6.0 10.1 9.5 5.6 7.0 1.2 1 0 0 1 1 1 0 VIT family FA_desaturase PF00487.19 gi|313117132|ref|YP_004038256.1| - 0.045 13.1 0.0 0.068 12.5 0.0 1.3 2 0 0 2 2 2 0 Fatty acid desaturase DUF3040 PF11239.3 gi|313117132|ref|YP_004038256.1| - 0.15 12.1 4.1 0.51 10.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF354 PF04007.7 gi|313122370|ref|YP_004038257.1| - 1.3e-61 208.3 0.0 1.6e-61 208.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.14 gi|313122370|ref|YP_004038257.1| - 0.047 12.4 0.0 0.074 11.8 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Velvet PF11754.3 gi|313122371|ref|YP_004038258.1| - 0.044 13.3 0.1 0.056 13.0 0.1 1.2 1 0 0 1 1 1 0 Velvet factor GFO_IDH_MocA PF01408.17 gi|313122372|ref|YP_004038259.1| - 1.2e-24 87.0 0.1 2.1e-24 86.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.1 gi|313122372|ref|YP_004038259.1| - 0.0065 16.6 0.2 0.014 15.5 0.2 1.6 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.12 gi|313122372|ref|YP_004038259.1| - 0.019 15.3 0.0 0.054 13.9 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.19 gi|313122373|ref|YP_004038260.1| - 5e-17 61.8 1.1 1.6e-08 34.1 0.1 2.5 3 0 0 3 3 3 2 Xylose isomerase-like TIM barrel Epimerase PF01370.16 gi|313122373|ref|YP_004038260.1| - 0.076 12.4 0.2 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family UxuA PF03786.8 gi|313122373|ref|YP_004038260.1| - 0.19 10.2 0.0 0.3 9.6 0.0 1.2 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) FG-GAP PF01839.18 gi|313122374|ref|YP_004038261.1| - 1.7e-26 91.2 16.2 0.0023 17.5 0.0 7.4 7 0 0 7 7 7 6 FG-GAP repeat VCBS PF13517.1 gi|313122374|ref|YP_004038261.1| - 5.9e-26 90.6 23.6 5.1e-11 42.7 0.4 5.8 4 2 2 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.3 gi|313122374|ref|YP_004038261.1| - 1.3e-07 31.2 13.8 1.6 8.1 0.0 6.3 4 1 3 7 7 7 4 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.1 gi|313122374|ref|YP_004038261.1| - 0.021 14.6 2.1 8 6.2 0.0 4.2 5 1 1 6 6 6 0 Ciliary BBSome complex subunit 2, middle region EF-hand_5 PF13202.1 gi|313122374|ref|YP_004038261.1| - 0.065 12.5 16.3 1.5 8.3 0.5 5.4 5 0 0 5 5 5 0 EF hand EF-hand_1 PF00036.27 gi|313122374|ref|YP_004038261.1| - 1.2 8.5 16.1 6 6.4 0.1 5.6 6 0 0 6 6 6 0 EF hand Methyltransf_21 PF05050.7 gi|313122375|ref|YP_004038262.1| - 3.8e-22 78.9 0.0 5.1e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|313122375|ref|YP_004038262.1| - 2.3e-07 30.2 0.0 1.6e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Vibrio cholerae RfbT protein Methyltransf_18 PF12847.2 gi|313122375|ref|YP_004038262.1| - 3.3e-07 30.8 0.0 6.3e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|313122375|ref|YP_004038262.1| - 2.9e-06 27.0 0.0 4.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|313122375|ref|YP_004038262.1| - 0.012 15.6 0.1 0.023 14.7 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|313122375|ref|YP_004038262.1| - 0.036 13.4 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Polysacc_deac_1 PF01522.16 gi|313122376|ref|YP_004038263.1| - 5.8e-29 100.2 0.0 1.1e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF693 PF05113.8 gi|313122376|ref|YP_004038263.1| - 0.036 12.9 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF693) Glycos_transf_2 PF00535.21 gi|313122377|ref|YP_004038264.1| - 3.2e-15 56.2 0.3 5.6e-15 55.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|313122377|ref|YP_004038264.1| - 5.5e-12 45.3 1.4 8.8e-06 25.0 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|313122377|ref|YP_004038264.1| - 3e-11 43.5 0.6 9.1e-11 41.9 0.4 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|313122377|ref|YP_004038264.1| - 0.0079 15.9 0.9 0.048 13.3 0.6 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|313122377|ref|YP_004038264.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Aldolase_2 PF10120.4 gi|313122377|ref|YP_004038264.1| - 0.017 14.5 0.0 0.04 13.2 0.0 1.6 1 0 0 1 1 1 0 Putative aldolase PhoD PF09423.5 gi|313122378|ref|YP_004038265.1| - 0.064 11.8 0.0 0.071 11.6 0.0 1.0 1 0 0 1 1 1 0 PhoD-like phosphatase Glycos_transf_1 PF00534.15 gi|313122380|ref|YP_004038267.1| - 3.6e-25 88.3 0.0 5.5e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313122380|ref|YP_004038267.1| - 1.3e-15 57.7 0.0 2.9e-15 56.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313122380|ref|YP_004038267.1| - 2.5e-15 56.9 3.6 5e-15 56.0 2.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|313122380|ref|YP_004038267.1| - 2.2e-11 43.8 0.0 1.5e-09 37.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313122380|ref|YP_004038267.1| - 1.6e-08 34.5 0.7 2.7e-08 33.7 0.5 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|313122380|ref|YP_004038267.1| - 2.6e-05 24.0 0.0 4.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like LigB PF02900.13 gi|313122380|ref|YP_004038267.1| - 0.045 12.7 0.0 2.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Phosphodiest PF01663.17 gi|313122381|ref|YP_004038268.1| - 1.4e-49 169.4 0.0 4e-49 167.8 0.0 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|313122381|ref|YP_004038268.1| - 0.012 15.0 0.0 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 Metalloenzyme superfamily AF0941-like PF14591.1 gi|313122381|ref|YP_004038268.1| - 0.12 12.4 0.1 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 AF0941-like Pectate_lyase_3 PF12708.2 gi|313122382|ref|YP_004038269.1| - 2.2e-09 37.7 1.9 3.8e-05 23.9 0.1 3.0 1 1 2 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|313122382|ref|YP_004038269.1| - 6.1e-09 35.8 8.6 0.00034 20.3 0.1 3.1 1 1 0 2 2 2 2 Right handed beta helix region Beta_helix PF13229.1 gi|313122383|ref|YP_004038270.1| - 0.017 14.8 37.7 0.19 11.4 15.2 4.7 2 2 2 4 4 4 0 Right handed beta helix region DUF1202 PF06717.6 gi|313122383|ref|YP_004038270.1| - 0.031 13.5 0.1 0.26 10.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1202) TAT_signal PF10518.4 gi|313122383|ref|YP_004038270.1| - 0.56 10.3 10.7 1.6 8.9 7.4 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Sulfatase PF00884.18 gi|313122385|ref|YP_004038272.1| - 5.2e-43 147.4 0.2 6.6e-43 147.0 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.13 gi|313122385|ref|YP_004038272.1| - 0.18 11.1 0.4 0.33 10.3 0.2 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.21 gi|313122386|ref|YP_004038273.1| - 3.2e-36 124.5 0.0 4.8e-36 123.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313122386|ref|YP_004038273.1| - 3.3e-22 79.4 0.8 5.1e-22 78.7 0.5 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|313122386|ref|YP_004038273.1| - 4.8e-08 32.4 0.0 5.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_11 PF13414.1 gi|313122386|ref|YP_004038273.1| - 0.00036 20.1 0.0 0.00063 19.3 0.0 1.3 1 0 0 1 1 1 1 TPR repeat TPR_16 PF13432.1 gi|313122386|ref|YP_004038273.1| - 0.025 15.2 0.9 0.06 14.0 0.6 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|313122386|ref|YP_004038273.1| - 0.062 13.9 0.6 0.26 12.0 0.3 2.1 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|313122386|ref|YP_004038273.1| - 0.066 13.1 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat UPF0167 PF03691.9 gi|313122386|ref|YP_004038273.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) Polysacc_synt PF01943.12 gi|313122387|ref|YP_004038274.1| - 1.8e-32 112.7 9.0 1.8e-32 112.7 6.2 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|313122387|ref|YP_004038274.1| - 1.7e-17 63.7 12.2 1.7e-17 63.7 8.5 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|313122387|ref|YP_004038274.1| - 2.4e-15 56.5 13.6 2.4e-15 56.5 9.4 3.4 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Sulfatase PF00884.18 gi|313122388|ref|YP_004038275.1| - 1.4e-34 119.7 0.5 1.8e-34 119.3 0.4 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313122388|ref|YP_004038275.1| - 2.2e-05 23.9 0.3 0.016 14.5 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAD_2 PF13419.1 gi|313122389|ref|YP_004038276.1| - 2.1e-25 89.9 0.0 2.5e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|313122389|ref|YP_004038276.1| - 5.9e-09 35.5 0.0 1.1e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|313122389|ref|YP_004038276.1| - 2.2e-08 34.7 2.6 7.6e-05 23.2 0.3 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|313122389|ref|YP_004038276.1| - 0.0028 17.8 0.1 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.21 gi|313122390|ref|YP_004038277.1| - 4.2e-22 78.6 0.0 2.5e-21 76.0 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313122390|ref|YP_004038277.1| - 1.1e-09 38.4 0.7 3.1e-09 36.9 0.5 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF4282 PF14110.1 gi|313122390|ref|YP_004038277.1| - 0.024 14.8 0.1 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Amidohydro_2 PF04909.9 gi|313122391|ref|YP_004038278.1| - 1.6e-52 178.7 0.5 2.3e-52 178.2 0.3 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|313122391|ref|YP_004038278.1| - 0.0011 18.2 0.0 0.013 14.6 0.0 2.1 2 0 0 2 2 2 1 TatD related DNase ECH PF00378.15 gi|313122392|ref|YP_004038279.1| - 5e-59 199.3 1.0 5.6e-59 199.2 0.7 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|313122392|ref|YP_004038279.1| - 0.055 13.6 0.3 0.85 9.7 0.1 2.2 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region HTH_10 PF04967.7 gi|313122393|ref|YP_004038280.1| - 7.9e-19 66.9 0.0 1.4e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|313122393|ref|YP_004038280.1| - 0.0087 15.4 0.0 0.026 13.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122393|ref|YP_004038280.1| - 0.018 14.6 0.4 0.066 12.7 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PaaA_PaaC PF05138.7 gi|313122394|ref|YP_004038281.1| - 9.1e-74 247.7 0.8 1.3e-73 247.1 0.5 1.2 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaB PF06243.6 gi|313122395|ref|YP_004038282.1| - 7.5e-28 96.5 0.5 8.7e-28 96.3 0.4 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.7 gi|313122396|ref|YP_004038283.1| - 2.5e-59 200.4 0.8 3.4e-59 199.9 0.6 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.1 gi|313122396|ref|YP_004038283.1| - 9e-05 22.0 0.2 0.00019 20.9 0.1 1.6 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Rubrerythrin PF02915.12 gi|313122396|ref|YP_004038283.1| - 0.016 15.5 1.4 0.41 10.9 0.1 3.1 2 1 1 3 3 3 0 Rubrerythrin HEAT_2 PF13646.1 gi|313122396|ref|YP_004038283.1| - 0.058 13.6 0.3 2.4 8.4 0.0 2.7 2 0 0 2 2 2 0 HEAT repeats PerC PF06069.6 gi|313122396|ref|YP_004038283.1| - 0.075 13.0 0.6 0.38 10.8 0.2 2.3 2 1 1 3 3 3 0 PerC transcriptional activator DUF59 PF01883.14 gi|313122397|ref|YP_004038284.1| - 6.4e-19 67.7 0.2 8.4e-19 67.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 Zn-ribbon_8 PF09723.5 gi|313122398|ref|YP_004038285.1| - 0.00055 19.8 4.3 0.038 13.9 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|313122398|ref|YP_004038285.1| - 0.019 14.9 2.5 0.024 14.6 1.7 1.1 1 0 0 1 1 1 0 DnaJ central domain Toxin_16 PF07945.6 gi|313122398|ref|YP_004038285.1| - 0.02 14.5 1.4 0.02 14.5 1.0 1.5 2 0 0 2 2 1 0 Janus-atracotoxin Lar_restr_allev PF14354.1 gi|313122398|ref|YP_004038285.1| - 0.038 14.3 4.9 0.05 13.9 3.4 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-LITAF-like PF10601.4 gi|313122398|ref|YP_004038285.1| - 0.088 12.6 0.8 5.1 7.0 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|313122398|ref|YP_004038285.1| - 0.18 11.1 6.2 2 7.8 4.3 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|313122398|ref|YP_004038285.1| - 0.26 11.0 3.7 0.62 9.8 2.6 1.6 1 1 0 1 1 1 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|313122398|ref|YP_004038285.1| - 0.36 10.5 2.1 0.45 10.2 1.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|313122398|ref|YP_004038285.1| - 0.41 10.6 0.2 0.41 10.6 0.1 2.2 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|313122398|ref|YP_004038285.1| - 0.51 10.1 3.8 0.71 9.7 2.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|313122398|ref|YP_004038285.1| - 0.66 9.8 5.6 7.6 6.4 3.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon Cys_rich_CPXG PF14255.1 gi|313122398|ref|YP_004038285.1| - 1.1 9.1 4.5 0.88 9.4 0.3 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C3HC4_3 PF13920.1 gi|313122398|ref|YP_004038285.1| - 1.4 8.6 4.9 15 5.3 0.1 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2 PF00096.21 gi|313122398|ref|YP_004038285.1| - 1.8 9.0 5.4 12 6.4 0.6 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|313122398|ref|YP_004038285.1| - 3.9 6.8 7.8 10 5.4 5.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|313122398|ref|YP_004038285.1| - 5 7.2 8.7 26 5.0 6.0 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Aldedh PF00171.17 gi|313122399|ref|YP_004038286.1| - 1.2e-179 597.4 0.0 1.4e-179 597.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.9 gi|313122399|ref|YP_004038286.1| - 0.05 13.8 0.0 0.19 11.9 0.0 2.0 1 1 0 1 1 1 0 YCII-related domain LuxC PF05893.9 gi|313122399|ref|YP_004038286.1| - 0.23 10.1 0.0 0.39 9.3 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) 4HBT PF03061.17 gi|313122400|ref|YP_004038287.1| - 1.6e-14 53.8 0.2 2.4e-14 53.2 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|313122400|ref|YP_004038287.1| - 6.3e-08 32.6 0.0 8.7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|313122400|ref|YP_004038287.1| - 0.00068 19.4 0.4 0.00078 19.2 0.3 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily AMP-binding_C_2 PF14535.1 gi|313122401|ref|YP_004038288.1| - 5.9e-24 83.9 0.0 1.4e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|313122401|ref|YP_004038288.1| - 2.7e-20 72.1 0.4 3.9e-20 71.6 0.3 1.2 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|313122401|ref|YP_004038288.1| - 0.0012 17.5 0.0 0.003 16.3 0.0 1.5 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE ABC_tran PF00005.22 gi|313122402|ref|YP_004038289.1| - 5.3e-34 117.4 0.0 7.4e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122402|ref|YP_004038289.1| - 4.8e-09 36.5 0.0 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|313122402|ref|YP_004038289.1| - 0.0011 18.4 0.1 0.0022 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122402|ref|YP_004038289.1| - 0.0064 16.0 0.1 0.013 14.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313122402|ref|YP_004038289.1| - 0.0089 16.0 2.4 0.18 11.7 1.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122402|ref|YP_004038289.1| - 0.015 15.4 1.2 0.1 12.7 0.8 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313122402|ref|YP_004038289.1| - 0.033 13.0 0.1 0.052 12.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.14 gi|313122402|ref|YP_004038289.1| - 0.033 13.4 0.1 4.6 6.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|313122402|ref|YP_004038289.1| - 0.037 13.9 0.2 0.33 10.9 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BCA_ABC_TP_C PF12399.3 gi|313122402|ref|YP_004038289.1| - 0.041 13.5 0.1 0.11 12.2 0.1 1.7 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|313122402|ref|YP_004038289.1| - 0.046 14.0 0.0 0.091 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313122402|ref|YP_004038289.1| - 0.046 13.3 0.4 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain SRP54 PF00448.17 gi|313122402|ref|YP_004038289.1| - 0.079 12.3 0.2 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|313122402|ref|YP_004038289.1| - 0.095 11.7 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|313122402|ref|YP_004038289.1| - 0.13 12.5 0.1 0.36 11.0 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|313122403|ref|YP_004038290.1| - 1.5e-28 99.8 0.0 1.9e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|313122403|ref|YP_004038290.1| - 3.8e-08 32.8 0.0 8.7e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_30 PF13604.1 gi|313122403|ref|YP_004038290.1| - 0.00015 21.3 0.0 0.00024 20.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|313122403|ref|YP_004038290.1| - 0.00018 21.5 0.1 0.044 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|313122403|ref|YP_004038290.1| - 0.0003 21.1 0.0 0.00033 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122403|ref|YP_004038290.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|313122403|ref|YP_004038290.1| - 0.0017 17.5 0.0 0.0025 16.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin SbcCD_C PF13558.1 gi|313122403|ref|YP_004038290.1| - 0.02 14.8 0.1 0.037 13.9 0.1 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|313122403|ref|YP_004038290.1| - 0.075 13.0 0.1 0.12 12.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313122403|ref|YP_004038290.1| - 0.084 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|313122403|ref|YP_004038290.1| - 0.097 12.1 0.1 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|313122403|ref|YP_004038290.1| - 0.13 11.4 0.1 0.27 10.4 0.1 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|313122403|ref|YP_004038290.1| - 0.18 10.2 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|313122404|ref|YP_004038291.1| - 4.4e-80 268.4 86.7 9.6e-47 159.1 28.0 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|313122405|ref|YP_004038292.1| - 2.3e-70 237.6 4.6 3e-70 237.2 3.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|313122405|ref|YP_004038292.1| - 2e-40 138.6 0.3 2.4e-40 138.3 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|313122405|ref|YP_004038292.1| - 2.8e-22 78.9 0.8 3.9e-22 78.5 0.6 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.8 gi|313122405|ref|YP_004038292.1| - 0.0039 16.6 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family MaoC_dehydratas PF01575.14 gi|313122406|ref|YP_004038293.1| - 1.5e-17 63.1 0.1 1.9e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313122406|ref|YP_004038293.1| - 0.0024 17.6 0.3 0.0061 16.3 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|313122407|ref|YP_004038294.1| - 2.4e-14 53.2 1.3 4.3e-14 52.3 0.9 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|313122407|ref|YP_004038294.1| - 2e-06 27.8 0.0 2.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.1 gi|313122407|ref|YP_004038294.1| - 0.0088 15.2 0.1 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 Polyketide synthase dehydratase AMP-binding_C_2 PF14535.1 gi|313122408|ref|YP_004038295.1| - 6.5e-23 80.5 0.0 1.8e-22 79.2 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|313122408|ref|YP_004038295.1| - 8.7e-21 73.7 0.0 1.3e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|313122408|ref|YP_004038295.1| - 2.4e-05 23.2 0.0 0.00032 19.4 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|313122408|ref|YP_004038295.1| - 0.022 13.3 0.0 0.35 9.3 0.0 2.6 3 0 0 3 3 3 0 GH3 auxin-responsive promoter 3HCDH_N PF02737.13 gi|313122409|ref|YP_004038296.1| - 6e-64 215.0 2.8 9.2e-64 214.4 1.9 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|313122409|ref|YP_004038296.1| - 3.9e-32 110.5 0.3 1.6e-31 108.5 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|313122409|ref|YP_004038296.1| - 1.8e-08 34.3 0.0 3e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|313122409|ref|YP_004038296.1| - 5.8e-05 22.9 3.7 0.00014 21.6 2.6 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|313122409|ref|YP_004038296.1| - 8e-05 22.0 0.2 0.00013 21.4 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|313122409|ref|YP_004038296.1| - 0.00011 22.5 2.3 0.01 16.2 1.6 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|313122409|ref|YP_004038296.1| - 0.12 12.2 0.3 0.37 10.6 0.2 1.7 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ECH PF00378.15 gi|313122410|ref|YP_004038297.1| - 7.3e-62 208.6 0.4 8.9e-62 208.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|313122410|ref|YP_004038297.1| - 3.4e-05 23.9 0.1 0.0003 20.8 0.0 2.1 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region DUF4248 PF14053.1 gi|313122410|ref|YP_004038297.1| - 0.07 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) NTP_transf_5 PF14907.1 gi|313122410|ref|YP_004038297.1| - 0.073 12.3 0.2 0.64 9.3 0.1 2.0 1 1 1 2 2 2 0 Uncharacterised nucleotidyltransferase RelB_N PF12910.2 gi|313122410|ref|YP_004038297.1| - 0.39 10.1 3.9 0.63 9.4 0.1 3.0 3 0 0 3 3 3 0 Antitoxin of toxin-antitoxin stability system N-terminal EthD PF07110.6 gi|313122412|ref|YP_004038299.1| - 6.2e-14 52.7 1.9 1.6e-13 51.4 1.3 1.6 1 1 0 1 1 1 1 EthD domain Dabb PF07876.7 gi|313122412|ref|YP_004038299.1| - 0.0012 19.2 0.1 0.0016 18.8 0.1 1.2 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain DUF3066 PF11266.3 gi|313122412|ref|YP_004038299.1| - 0.11 12.2 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3066) HD PF01966.17 gi|313122414|ref|YP_004038301.1| - 1.7e-09 37.7 0.0 2.8e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 HD domain zinc-ribbons_6 PF07191.7 gi|313122416|ref|YP_004038303.1| - 0.0046 16.7 0.6 0.0074 16.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.2 gi|313122416|ref|YP_004038303.1| - 0.028 14.2 1.6 0.073 12.9 1.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|313122416|ref|YP_004038303.1| - 0.075 12.3 3.8 1.9 7.8 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PADR1 PF08063.7 gi|313122416|ref|YP_004038303.1| - 0.11 11.9 3.2 5.2 6.5 0.4 2.2 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-ribbon_3 PF13248.1 gi|313122416|ref|YP_004038303.1| - 0.11 11.6 2.2 4.9 6.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313122416|ref|YP_004038303.1| - 0.12 12.3 3.9 5 7.1 0.4 2.5 2 1 0 2 2 2 0 Zinc ribbon domain DUF164 PF02591.10 gi|313122416|ref|YP_004038303.1| - 0.15 11.9 1.2 4.8 7.0 0.2 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|313122416|ref|YP_004038303.1| - 0.15 11.5 3.8 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|313122416|ref|YP_004038303.1| - 0.2 11.3 4.1 6.3 6.5 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|313122416|ref|YP_004038303.1| - 0.49 9.9 3.1 15 5.2 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|313122416|ref|YP_004038303.1| - 0.91 8.9 3.1 7.9 5.8 0.5 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Opy2 PF09463.5 gi|313122416|ref|YP_004038303.1| - 1.3 9.1 6.3 6.9 6.8 0.2 2.3 2 0 0 2 2 2 0 Opy2 protein RRN7 PF11781.3 gi|313122416|ref|YP_004038303.1| - 1.4 8.4 5.5 8.9 5.9 0.8 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|313122416|ref|YP_004038303.1| - 8.8 6.1 9.4 2.1 8.1 0.7 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|313122416|ref|YP_004038303.1| - 9.5 6.3 7.0 11 6.1 0.1 2.4 2 1 0 2 2 2 0 zinc-finger NTP_transferase PF00483.18 gi|313122418|ref|YP_004038305.1| - 8.6e-42 143.1 0.0 1.3e-41 142.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313122418|ref|YP_004038305.1| - 5.5e-15 55.8 0.3 1.1e-14 54.8 0.2 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|313122418|ref|YP_004038305.1| - 7e-13 47.4 10.5 0.0027 17.1 0.1 4.8 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|313122418|ref|YP_004038305.1| - 3e-07 30.1 0.1 5.6e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|313122418|ref|YP_004038305.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Hexapep_2 PF14602.1 gi|313122418|ref|YP_004038305.1| - 1 8.9 12.6 4.6 6.8 0.2 4.7 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase HTH_20 PF12840.2 gi|313122419|ref|YP_004038306.1| - 2.6e-09 36.7 0.0 4.1e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|313122419|ref|YP_004038306.1| - 7.7e-09 35.0 0.0 1.5e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|313122419|ref|YP_004038306.1| - 4.1e-07 29.5 0.0 7.3e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|313122419|ref|YP_004038306.1| - 9.3e-07 28.4 0.0 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313122419|ref|YP_004038306.1| - 5e-06 26.0 0.0 8.6e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313122419|ref|YP_004038306.1| - 3.3e-05 23.4 0.0 5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|313122419|ref|YP_004038306.1| - 4.5e-05 22.8 0.0 8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|313122419|ref|YP_004038306.1| - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313122419|ref|YP_004038306.1| - 0.00015 21.0 0.0 0.00025 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122419|ref|YP_004038306.1| - 0.00017 21.0 0.3 0.00042 19.7 0.2 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|313122419|ref|YP_004038306.1| - 0.0014 18.0 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|313122419|ref|YP_004038306.1| - 0.0026 17.8 0.0 0.0054 16.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|313122419|ref|YP_004038306.1| - 0.0033 17.0 0.0 0.0062 16.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain FUR PF01475.14 gi|313122419|ref|YP_004038306.1| - 0.0039 17.1 0.0 0.0063 16.4 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_28 PF13518.1 gi|313122419|ref|YP_004038306.1| - 0.0052 16.7 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|313122419|ref|YP_004038306.1| - 0.0076 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|313122419|ref|YP_004038306.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|313122419|ref|YP_004038306.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|313122419|ref|YP_004038306.1| - 0.014 15.3 0.0 0.034 14.1 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Replic_Relax PF13814.1 gi|313122419|ref|YP_004038306.1| - 0.014 15.2 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF4423 PF14394.1 gi|313122419|ref|YP_004038306.1| - 0.019 14.5 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Mga PF05043.8 gi|313122419|ref|YP_004038306.1| - 0.027 14.7 0.0 0.067 13.4 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_38 PF13936.1 gi|313122419|ref|YP_004038306.1| - 0.031 13.8 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|313122419|ref|YP_004038306.1| - 0.042 13.4 0.0 0.083 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family B-block_TFIIIC PF04182.7 gi|313122419|ref|YP_004038306.1| - 0.044 13.6 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Phage_rep_org_N PF09681.5 gi|313122419|ref|YP_004038306.1| - 0.047 13.2 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_36 PF13730.1 gi|313122419|ref|YP_004038306.1| - 0.051 13.7 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|313122419|ref|YP_004038306.1| - 0.055 12.6 0.0 0.089 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|313122419|ref|YP_004038306.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|313122419|ref|YP_004038306.1| - 0.13 12.0 0.0 2.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix HTH_17 PF12728.2 gi|313122419|ref|YP_004038306.1| - 0.14 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SIS PF01380.17 gi|313122420|ref|YP_004038307.1| - 3.6e-53 178.6 0.8 1.9e-27 95.4 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|313122420|ref|YP_004038307.1| - 5.9e-24 84.5 0.0 1.6e-23 83.0 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|313122420|ref|YP_004038307.1| - 1.7e-21 76.3 0.0 2.3e-15 56.1 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|313122420|ref|YP_004038307.1| - 1.7e-19 69.7 0.0 7.6e-19 67.6 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|313122420|ref|YP_004038307.1| - 1e-06 27.6 0.0 1.6e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|313122420|ref|YP_004038307.1| - 0.00031 20.4 2.2 0.055 13.1 0.0 3.5 4 0 0 4 4 4 1 SIS domain DUF4170 PF13773.1 gi|313122420|ref|YP_004038307.1| - 0.094 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4170) NTP_transferase PF00483.18 gi|313122421|ref|YP_004038308.1| - 1.1e-33 116.6 0.0 1.3e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313122421|ref|YP_004038308.1| - 4.5e-18 65.8 0.1 7.4e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|313122421|ref|YP_004038308.1| - 9.2e-15 53.3 18.6 3.6e-06 26.2 0.6 5.0 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313122421|ref|YP_004038308.1| - 2e-09 36.8 21.2 2.5e-07 30.1 1.2 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|313122421|ref|YP_004038308.1| - 1.1e-05 25.1 0.1 2.1e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_20 PF12840.2 gi|313122423|ref|YP_004038310.1| - 6.8e-05 22.5 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|313122423|ref|YP_004038310.1| - 0.0006 19.4 0.0 1 9.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family Stn1_C PF12659.2 gi|313122423|ref|YP_004038310.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Telomere capping C-terminal wHTH PadR PF03551.9 gi|313122424|ref|YP_004038311.1| - 6.3e-13 48.2 0.2 7.7e-13 48.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.6 gi|313122424|ref|YP_004038311.1| - 0.00064 19.3 0.0 0.00095 18.7 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|313122424|ref|YP_004038311.1| - 0.0017 18.3 0.0 0.0025 17.7 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|313122424|ref|YP_004038311.1| - 0.02 14.5 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_27 PF13463.1 gi|313122424|ref|YP_004038311.1| - 0.02 15.2 0.0 0.033 14.5 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|313122424|ref|YP_004038311.1| - 0.036 13.8 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix FUR PF01475.14 gi|313122424|ref|YP_004038311.1| - 0.038 13.9 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Epimerase_2 PF02350.14 gi|313122426|ref|YP_004038313.1| - 2.3e-108 362.0 0.0 2.8e-108 361.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Lipase_GDSL_2 PF13472.1 gi|313122426|ref|YP_004038313.1| - 0.012 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Glyco_trans_4_2 PF13477.1 gi|313122426|ref|YP_004038313.1| - 0.077 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like DUF354 PF04007.7 gi|313122426|ref|YP_004038313.1| - 0.16 10.8 0.0 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) UDPG_MGDP_dh_N PF03721.9 gi|313122427|ref|YP_004038314.1| - 8.8e-51 171.9 0.0 1.7e-50 171.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|313122427|ref|YP_004038314.1| - 2.3e-24 85.4 0.0 4e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|313122427|ref|YP_004038314.1| - 1.3e-20 73.4 1.0 5.2e-19 68.3 0.0 3.3 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|313122427|ref|YP_004038314.1| - 2.3e-06 27.9 0.3 0.45 10.9 0.0 3.8 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|313122427|ref|YP_004038314.1| - 5e-06 26.3 0.0 4.9e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|313122427|ref|YP_004038314.1| - 9.4e-06 25.5 0.0 2.6e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|313122427|ref|YP_004038314.1| - 4.3e-05 23.4 0.3 0.0013 18.7 0.0 3.0 2 1 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|313122427|ref|YP_004038314.1| - 9.9e-05 21.5 0.0 0.024 13.8 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|313122427|ref|YP_004038314.1| - 0.0002 21.0 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|313122427|ref|YP_004038314.1| - 0.00071 19.0 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Methyltransf_18 PF12847.2 gi|313122427|ref|YP_004038314.1| - 0.014 15.9 0.1 0.23 12.0 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain NAD_binding_10 PF13460.1 gi|313122427|ref|YP_004038314.1| - 0.029 14.3 0.4 8.4 6.3 0.1 2.6 2 1 0 2 2 2 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|313122427|ref|YP_004038314.1| - 0.033 13.7 0.0 0.13 11.8 0.0 2.0 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transferase PF00483.18 gi|313122429|ref|YP_004038316.1| - 3.9e-40 137.7 0.0 4.7e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313122429|ref|YP_004038316.1| - 2.5e-17 63.4 0.0 3.1e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|313122429|ref|YP_004038316.1| - 7.4e-08 32.1 0.0 2.7e-07 30.3 0.0 1.8 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|313122429|ref|YP_004038316.1| - 0.0059 16.3 0.1 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 PGM_PMM_I PF02878.11 gi|313122430|ref|YP_004038317.1| - 9.6e-32 109.3 0.0 1.7e-31 108.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|313122430|ref|YP_004038317.1| - 4e-20 71.9 0.0 7.1e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|313122430|ref|YP_004038317.1| - 6.8e-17 61.6 0.1 2e-16 60.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|313122430|ref|YP_004038317.1| - 6.8e-14 51.6 0.1 1.6e-13 50.4 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF457 PF04307.9 gi|313122432|ref|YP_004038319.1| - 2.4e-11 43.2 7.7 3.3e-11 42.7 5.4 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|313122432|ref|YP_004038319.1| - 0.0056 16.3 0.0 0.0072 15.9 0.0 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C PsbX PF06596.6 gi|313122432|ref|YP_004038319.1| - 0.024 14.2 3.2 0.024 14.2 2.2 1.7 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) Sulfatase PF00884.18 gi|313122433|ref|YP_004038320.1| - 1e-21 77.4 0.3 1.4e-21 77.0 0.2 1.2 1 0 0 1 1 1 1 Sulfatase Glycos_transf_1 PF00534.15 gi|313122434|ref|YP_004038321.1| - 1.2e-25 89.9 0.0 2.1e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313122434|ref|YP_004038321.1| - 1.5e-24 86.6 0.1 6e-24 84.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313122434|ref|YP_004038321.1| - 4.2e-18 65.9 5.9 4.2e-18 65.9 4.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|313122434|ref|YP_004038321.1| - 5.9e-10 39.2 0.0 2e-09 37.5 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313122434|ref|YP_004038321.1| - 1.2e-08 34.8 1.3 7.8e-08 32.2 0.9 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF1697 PF08002.6 gi|313122434|ref|YP_004038321.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1697) Methyltransf_11 PF08241.7 gi|313122435|ref|YP_004038322.1| - 4.4e-07 30.2 0.0 1e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Prenyltrans_1 PF13243.1 gi|313122435|ref|YP_004038322.1| - 0.00038 20.4 3.9 0.67 9.9 0.1 3.6 4 1 0 4 4 4 2 Prenyltransferase-like Glyco_hydro_88 PF07470.8 gi|313122435|ref|YP_004038322.1| - 0.023 13.7 3.9 1.3 7.9 0.1 2.7 2 1 0 3 3 3 0 Glycosyl Hydrolase Family 88 Prenyltrans_2 PF13249.1 gi|313122435|ref|YP_004038322.1| - 0.039 14.3 0.6 0.35 11.2 0.0 2.6 3 0 0 3 3 3 0 Prenyltransferase-like Sulfatase PF00884.18 gi|313122436|ref|YP_004038323.1| - 6e-38 130.7 3.1 7.4e-38 130.4 0.3 1.9 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.17 gi|313122436|ref|YP_004038323.1| - 2.2e-06 27.2 0.3 0.00016 21.1 0.2 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2236 PF09995.4 gi|313122436|ref|YP_004038323.1| - 7 5.8 6.2 6.7 5.9 0.2 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2236) GSDH PF07995.6 gi|313122437|ref|YP_004038324.1| - 3.2e-52 177.6 0.0 5.3e-52 176.9 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase PKD PF00801.15 gi|313122437|ref|YP_004038324.1| - 1.4e-14 53.5 6.0 1.4e-14 53.5 4.1 6.3 6 0 0 6 6 6 3 PKD domain GIDE PF12483.3 gi|313122439|ref|YP_004038326.1| - 0.00029 20.2 0.0 0.00092 18.6 0.0 1.7 2 0 0 2 2 2 1 E3 Ubiquitin ligase Cdc6_C PF09079.6 gi|313122440|ref|YP_004038327.1| - 8.6e-20 70.2 0.0 2e-19 69.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|313122440|ref|YP_004038327.1| - 6.2e-12 45.8 0.1 4e-11 43.2 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122440|ref|YP_004038327.1| - 1.2e-11 44.9 0.0 2.8e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|313122440|ref|YP_004038327.1| - 3.4e-05 23.5 0.0 5.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.17 gi|313122440|ref|YP_004038327.1| - 7.2e-05 21.7 0.0 0.00011 21.2 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|313122440|ref|YP_004038327.1| - 8.2e-05 21.6 0.0 0.00018 20.4 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA PF00004.24 gi|313122440|ref|YP_004038327.1| - 0.00031 20.9 0.0 0.00084 19.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|313122440|ref|YP_004038327.1| - 0.0017 18.1 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase DEAD PF00270.24 gi|313122440|ref|YP_004038327.1| - 0.004 16.6 0.5 0.27 10.7 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|313122440|ref|YP_004038327.1| - 0.013 14.9 0.0 0.041 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313122440|ref|YP_004038327.1| - 0.017 15.2 0.1 0.038 14.1 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|313122440|ref|YP_004038327.1| - 0.023 14.4 0.2 0.17 11.5 0.2 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|313122440|ref|YP_004038327.1| - 0.023 14.3 0.0 0.057 13.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_18 PF13238.1 gi|313122440|ref|YP_004038327.1| - 0.024 14.9 0.0 0.066 13.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|313122440|ref|YP_004038327.1| - 0.031 13.2 0.1 1.8 7.4 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain AAA_32 PF13654.1 gi|313122440|ref|YP_004038327.1| - 0.035 12.7 0.1 0.64 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|313122440|ref|YP_004038327.1| - 0.096 11.6 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Sigma54_activat PF00158.21 gi|313122440|ref|YP_004038327.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|313122440|ref|YP_004038327.1| - 0.15 11.6 0.7 0.26 10.8 0.5 1.5 1 1 0 1 1 1 0 AAA domain HTH_29 PF13551.1 gi|313122441|ref|YP_004038328.1| - 1.4e-23 83.1 0.0 2.2e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|313122441|ref|YP_004038328.1| - 5.8e-13 49.4 0.7 1e-12 48.6 0.5 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|313122441|ref|YP_004038328.1| - 5.1e-11 42.3 0.0 2.3e-10 40.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_33 PF13592.1 gi|313122441|ref|YP_004038328.1| - 2.7e-08 33.2 0.2 9.4e-08 31.4 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn helix HTH_23 PF13384.1 gi|313122441|ref|YP_004038328.1| - 1.4e-07 30.9 0.0 3.4e-07 29.6 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|313122441|ref|YP_004038328.1| - 2.9e-05 23.9 0.0 6.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Transposase HTH_psq PF05225.11 gi|313122441|ref|YP_004038328.1| - 0.00034 20.1 0.1 0.00088 18.7 0.0 1.8 1 1 1 2 2 2 1 helix-turn-helix, Psq domain MerR_1 PF13411.1 gi|313122441|ref|YP_004038328.1| - 0.0013 18.4 0.2 0.0041 16.8 0.1 1.8 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_7 PF02796.10 gi|313122441|ref|YP_004038328.1| - 0.0013 18.5 0.1 1.4 8.8 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase LZ_Tnp_IS481 PF13011.1 gi|313122441|ref|YP_004038328.1| - 0.0036 17.6 0.0 0.0067 16.7 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_Tnp_IS630 PF01710.11 gi|313122441|ref|YP_004038328.1| - 0.016 14.8 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Transposase Endonuc_subdom PF09062.5 gi|313122441|ref|YP_004038328.1| - 0.045 14.5 0.1 0.14 12.9 0.0 1.7 2 0 0 2 2 2 0 PI-PfuI Endonuclease subdomain HTH_17 PF12728.2 gi|313122441|ref|YP_004038328.1| - 0.077 13.2 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|313122441|ref|YP_004038328.1| - 0.082 12.7 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313122441|ref|YP_004038328.1| - 0.11 11.7 0.0 0.75 9.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|313122441|ref|YP_004038328.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HBS1_N PF08938.5 gi|313122441|ref|YP_004038328.1| - 0.17 12.0 1.3 1.2 9.2 0.9 2.4 1 1 0 1 1 1 0 HBS1 N-terminus zf-HC2 PF13490.1 gi|313122441|ref|YP_004038328.1| - 0.74 9.8 2.6 0.88 9.5 0.2 2.4 2 0 0 2 2 2 0 Putative zinc-finger DUF1131 PF06572.7 gi|313122442|ref|YP_004038329.1| - 0.05 13.0 0.5 5.4 6.4 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1131) HypA PF01155.14 gi|313122442|ref|YP_004038329.1| - 0.065 12.9 0.2 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family LRV_FeS PF05484.6 gi|313122442|ref|YP_004038329.1| - 0.29 10.7 2.3 0.87 9.2 1.4 1.9 1 1 1 2 2 2 0 LRV protein FeS4 cluster AAA_23 PF13476.1 gi|313122443|ref|YP_004038330.1| - 3.1e-08 34.1 23.9 3.1e-08 34.1 16.6 4.8 2 2 0 2 2 1 1 AAA domain GAS PF13851.1 gi|313122443|ref|YP_004038330.1| - 4.2e-06 26.1 52.5 0.0078 15.4 13.1 4.3 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding AAA_13 PF13166.1 gi|313122443|ref|YP_004038330.1| - 1.9e-05 23.3 37.8 0.00017 20.2 9.7 2.5 2 1 0 2 2 2 2 AAA domain WEMBL PF05701.6 gi|313122443|ref|YP_004038330.1| - 3e-05 22.6 45.4 0.0054 15.2 11.9 2.1 2 0 0 2 2 2 2 Weak chloroplast movement under blue light Reo_sigmaC PF04582.7 gi|313122443|ref|YP_004038330.1| - 8.1e-05 21.9 13.0 0.00087 18.5 1.7 3.2 1 1 1 3 3 3 3 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|313122443|ref|YP_004038330.1| - 0.0002 21.5 32.5 0.22 11.8 0.2 6.9 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein AAA_27 PF13514.1 gi|313122443|ref|YP_004038330.1| - 0.00021 19.1 52.4 0.0048 14.6 14.9 2.2 2 0 0 2 2 2 2 AAA domain Spc7 PF08317.6 gi|313122443|ref|YP_004038330.1| - 0.00034 19.3 60.1 0.043 12.4 12.0 4.5 2 2 1 4 4 4 4 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|313122443|ref|YP_004038330.1| - 0.00081 19.2 20.6 1 9.1 1.7 5.5 3 2 1 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.4 gi|313122443|ref|YP_004038330.1| - 0.0016 18.3 17.2 0.0016 18.3 11.9 5.0 2 2 2 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HsbA PF12296.3 gi|313122443|ref|YP_004038330.1| - 0.002 17.9 2.4 0.016 15.0 0.1 2.9 3 0 0 3 3 2 1 Hydrophobic surface binding protein A IncA PF04156.9 gi|313122443|ref|YP_004038330.1| - 0.0028 17.2 80.1 0.0091 15.6 14.1 4.5 2 2 2 4 4 4 2 IncA protein COG2 PF06148.6 gi|313122443|ref|YP_004038330.1| - 0.0032 17.3 35.7 0.16 11.8 3.2 6.1 2 2 4 6 6 6 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.3 gi|313122443|ref|YP_004038330.1| - 0.0034 14.8 54.5 0.049 10.9 25.4 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) TBPIP PF07106.8 gi|313122443|ref|YP_004038330.1| - 0.004 16.7 51.4 0.021 14.4 1.2 5.0 3 2 1 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlxA PF14282.1 gi|313122443|ref|YP_004038330.1| - 0.0041 17.0 38.1 0.0059 16.5 0.0 5.3 2 2 2 5 5 5 2 FlxA-like protein BLOC1_2 PF10046.4 gi|313122443|ref|YP_004038330.1| - 0.0062 16.6 1.9 0.0062 16.6 1.3 6.8 3 3 3 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.16 gi|313122443|ref|YP_004038330.1| - 0.012 15.8 47.1 0.038 14.2 3.8 5.2 2 2 1 5 5 5 0 Spectrin repeat Laminin_II PF06009.7 gi|313122443|ref|YP_004038330.1| - 0.029 14.1 30.2 0.14 11.8 4.6 5.5 3 2 2 6 6 5 0 Laminin Domain II FliD_N PF02465.13 gi|313122443|ref|YP_004038330.1| - 0.031 14.6 16.2 1.1 9.6 0.0 6.0 4 2 3 7 7 6 0 Flagellar hook-associated protein 2 N-terminus Tropomyosin_1 PF12718.2 gi|313122443|ref|YP_004038330.1| - 0.042 13.7 81.2 1.9 8.3 21.2 4.8 2 2 2 4 4 4 0 Tropomyosin like Val_tRNA-synt_C PF10458.4 gi|313122443|ref|YP_004038330.1| - 0.064 13.3 0.1 0.064 13.3 0.1 7.3 5 2 3 8 8 7 0 Valyl tRNA synthetase tRNA binding arm Atg14 PF10186.4 gi|313122443|ref|YP_004038330.1| - 0.089 11.7 51.7 0.15 10.9 5.8 4.2 2 2 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|313122443|ref|YP_004038330.1| - 0.19 10.7 62.3 0.023 13.7 12.6 4.3 2 2 2 4 4 4 0 Autophagy protein Apg6 Seryl_tRNA_N PF02403.17 gi|313122443|ref|YP_004038330.1| - 0.2 11.7 57.4 0.56 10.2 3.2 5.7 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|313122443|ref|YP_004038330.1| - 0.21 11.5 66.5 0.98 9.3 14.1 6.3 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) DUF342 PF03961.8 gi|313122443|ref|YP_004038330.1| - 0.24 9.7 43.1 0.24 9.7 1.0 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF342) Fez1 PF06818.10 gi|313122443|ref|YP_004038330.1| - 0.27 11.2 57.1 11 5.9 13.7 3.5 1 1 2 3 3 3 0 Fez1 Flagellin_C PF00700.16 gi|313122443|ref|YP_004038330.1| - 0.83 9.8 16.3 0.14 12.3 0.6 5.1 3 1 1 5 5 5 0 Bacterial flagellin C-terminal helical region Fzo_mitofusin PF04799.8 gi|313122443|ref|YP_004038330.1| - 1.1 8.6 37.1 0.63 9.3 1.3 6.1 2 2 4 6 6 6 0 fzo-like conserved region DUF607 PF04678.8 gi|313122443|ref|YP_004038330.1| - 1.1 9.1 25.8 0.45 10.4 0.2 5.3 2 2 3 5 5 5 0 Protein of unknown function, DUF607 Syntaxin-6_N PF09177.6 gi|313122443|ref|YP_004038330.1| - 1.3 9.4 53.5 2.2 8.7 0.8 5.8 4 2 0 4 4 4 0 Syntaxin 6, N-terminal Myosin_tail_1 PF01576.14 gi|313122443|ref|YP_004038330.1| - 1.9 6.1 78.8 0.48 8.0 8.5 3.3 2 2 1 3 3 3 0 Myosin tail ATG16 PF08614.6 gi|313122443|ref|YP_004038330.1| - 2.4 7.9 63.7 0.13 12.0 9.5 5.2 2 2 1 4 4 4 0 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.7 gi|313122443|ref|YP_004038330.1| - 3.6 7.3 54.7 29 4.4 12.0 5.7 2 1 3 5 5 4 0 TPR/MLP1/MLP2-like protein DivIC PF04977.10 gi|313122443|ref|YP_004038330.1| - 4.5 6.8 73.5 3.2 7.3 8.1 8.5 2 2 6 8 8 8 0 Septum formation initiator Cytochrom_C_2 PF01322.15 gi|313122443|ref|YP_004038330.1| - 4.6 7.8 9.1 13 6.2 0.7 4.2 4 1 1 5 5 3 0 Cytochrome C' Phage_GP20 PF06810.6 gi|313122443|ref|YP_004038330.1| - 7.1 6.0 53.8 1.4 8.3 7.9 6.4 3 2 4 7 7 6 0 Phage minor structural protein GP20 MscS_porin PF12795.2 gi|313122443|ref|YP_004038330.1| - 7.8 5.7 54.1 0.55 9.5 7.2 4.1 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain Mnd1 PF03962.10 gi|313122443|ref|YP_004038330.1| - 8 6.0 59.4 2 8.0 2.7 5.8 2 2 2 4 4 4 0 Mnd1 family DUF869 PF05911.6 gi|313122443|ref|YP_004038330.1| - 9.4 4.3 53.5 0.71 8.0 15.6 3.0 1 1 0 3 3 3 0 Plant protein of unknown function (DUF869) Trypan_PARP PF05887.6 gi|313122444|ref|YP_004038331.1| - 0.00023 21.0 2.7 0.0008 19.2 1.9 1.9 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) DUF3244 PF11589.3 gi|313122444|ref|YP_004038331.1| - 0.0025 17.5 6.4 0.45 10.2 0.0 4.0 4 0 0 4 4 4 2 Domain of unknown function (DUF3244) Abhydrolase_6 PF12697.2 gi|313122447|ref|YP_004038334.1| - 6.7e-34 117.7 2.0 8.7e-34 117.3 1.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313122447|ref|YP_004038334.1| - 9.6e-20 71.1 0.0 2.1e-19 70.0 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313122447|ref|YP_004038334.1| - 2.2e-13 50.1 0.0 5.6e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|313122447|ref|YP_004038334.1| - 0.005 16.0 0.1 0.11 11.6 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family CbiA PF01656.18 gi|313122451|ref|YP_004038338.1| - 3e-30 105.0 0.0 3.8e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313122451|ref|YP_004038338.1| - 1e-10 41.7 0.0 2.8e-10 40.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|313122451|ref|YP_004038338.1| - 5.6e-08 32.1 0.3 2.9e-05 23.2 0.1 2.6 3 0 0 3 3 3 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|313122451|ref|YP_004038338.1| - 3.7e-06 26.1 0.1 0.00014 20.9 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|313122451|ref|YP_004038338.1| - 0.0023 17.1 0.0 0.0054 15.9 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|313122451|ref|YP_004038338.1| - 0.0041 17.9 0.3 0.013 16.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|313122451|ref|YP_004038338.1| - 0.0062 15.9 0.1 0.026 13.9 0.2 1.7 2 0 0 2 2 2 1 YhjQ protein VirC1 PF07015.6 gi|313122451|ref|YP_004038338.1| - 0.011 14.8 0.1 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MobB PF03205.9 gi|313122451|ref|YP_004038338.1| - 0.04 13.6 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|313122451|ref|YP_004038338.1| - 0.044 13.1 0.1 0.1 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|313122451|ref|YP_004038338.1| - 0.052 12.9 0.1 0.093 12.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|313122451|ref|YP_004038338.1| - 0.053 13.8 0.4 0.2 11.9 0.0 2.2 3 1 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|313122451|ref|YP_004038338.1| - 0.064 13.0 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|313122451|ref|YP_004038338.1| - 0.11 11.8 0.0 0.39 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain KTI12 PF08433.5 gi|313122451|ref|YP_004038338.1| - 0.19 10.8 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Transglut_core PF01841.14 gi|313122452|ref|YP_004038339.1| - 1.9e-31 108.6 0.0 4.1e-31 107.5 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|313122452|ref|YP_004038339.1| - 1.8e-05 24.5 0.4 1.8e-05 24.5 0.3 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF3488 PF11992.3 gi|313122452|ref|YP_004038339.1| - 0.0013 17.4 0.3 0.0021 16.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.1 gi|313122452|ref|YP_004038339.1| - 0.0088 15.8 0.0 0.029 14.1 0.0 1.8 1 0 0 1 1 1 1 Transglutaminase-like superfamily HLH PF00010.21 gi|313122453|ref|YP_004038340.1| - 0.023 14.3 0.1 7 6.4 0.0 2.3 2 0 0 2 2 2 0 Helix-loop-helix DNA-binding domain DUF2910 PF11139.3 gi|313122453|ref|YP_004038340.1| - 0.024 13.8 2.0 0.036 13.2 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) DUF58 PF01882.13 gi|313122454|ref|YP_004038341.1| - 6.3e-17 61.4 2.3 7.1e-17 61.3 0.2 2.2 3 0 0 3 3 3 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|313122454|ref|YP_004038341.1| - 4.3e-06 26.6 1.9 0.0028 17.6 0.0 3.0 2 0 0 2 2 2 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|313122454|ref|YP_004038341.1| - 0.0014 18.6 2.6 0.052 13.6 0.4 2.9 1 1 1 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|313122454|ref|YP_004038341.1| - 0.0094 15.9 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 CARDB Fn3-like PF14310.1 gi|313122454|ref|YP_004038341.1| - 0.017 15.0 0.5 4.2 7.3 0.0 2.9 3 0 0 3 3 3 0 Fibronectin type III-like domain Acetyltransf_3 PF13302.1 gi|313122456|ref|YP_004038343.1| - 4e-23 82.1 0.0 5e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|313122456|ref|YP_004038343.1| - 5.2e-20 71.9 0.0 6e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313122456|ref|YP_004038343.1| - 2.7e-07 30.4 0.0 4e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|313122456|ref|YP_004038343.1| - 1.5e-05 24.9 0.0 2.2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313122456|ref|YP_004038343.1| - 0.032 13.9 0.0 0.074 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein DUF4013 PF13197.1 gi|313122457|ref|YP_004038344.1| - 2.1e-39 134.5 23.3 2.7e-39 134.2 16.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) Ost4 PF10215.4 gi|313122457|ref|YP_004038344.1| - 9.2 5.8 7.4 2 7.9 1.7 2.5 2 0 0 2 2 2 0 Oligosaccaryltransferase Catalase-rel PF06628.7 gi|313122459|ref|YP_004038346.1| - 0.039 13.8 0.0 0.093 12.6 0.0 1.6 2 0 0 2 2 2 0 Catalase-related immune-responsive BAAT_C PF08840.6 gi|313122461|ref|YP_004038348.1| - 2.2e-39 135.3 0.0 5.3e-39 134.1 0.0 1.6 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.9 gi|313122461|ref|YP_004038348.1| - 4.1e-27 94.3 0.0 6.6e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region Abhydrolase_6 PF12697.2 gi|313122461|ref|YP_004038348.1| - 1.7e-07 31.3 6.9 3e-07 30.5 4.8 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|313122461|ref|YP_004038348.1| - 1.9e-07 30.9 0.2 4.4e-07 29.7 0.1 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|313122461|ref|YP_004038348.1| - 3.6e-05 23.1 0.2 0.0014 17.9 0.1 2.7 2 1 0 2 2 2 1 Dienelactone hydrolase family Chlorophyllase PF07224.6 gi|313122461|ref|YP_004038348.1| - 0.0086 14.9 0.0 0.016 13.9 0.0 1.4 1 0 0 1 1 1 1 Chlorophyllase Rieske PF00355.21 gi|313122463|ref|YP_004038350.1| - 9.9e-11 41.0 0.1 1.4e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|313122463|ref|YP_004038350.1| - 0.0011 18.6 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain SprT-like PF10263.4 gi|313122464|ref|YP_004038351.1| - 1.6e-08 34.3 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|313122464|ref|YP_004038351.1| - 0.024 14.6 0.1 0.04 13.9 0.1 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4157 PF13699.1 gi|313122464|ref|YP_004038351.1| - 0.03 14.4 0.6 1.9 8.6 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4157) Na_Ca_ex PF01699.19 gi|313122465|ref|YP_004038352.1| - 2.6e-44 150.2 28.6 1.5e-23 82.9 6.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein AAA_3 PF07726.6 gi|313122466|ref|YP_004038353.1| - 6.3e-65 216.6 0.0 9e-65 216.1 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313122466|ref|YP_004038353.1| - 1.4e-15 57.2 0.0 4.4e-15 55.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313122466|ref|YP_004038353.1| - 9e-07 29.1 0.0 6e-06 26.4 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|313122466|ref|YP_004038353.1| - 3.3e-06 26.1 0.1 0.00042 19.2 0.0 2.1 2 0 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|313122466|ref|YP_004038353.1| - 3.7e-05 23.2 0.0 0.00019 20.9 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|313122466|ref|YP_004038353.1| - 0.015 14.3 0.1 0.17 10.9 0.0 2.4 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|313122466|ref|YP_004038353.1| - 0.026 14.2 0.1 0.083 12.6 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|313122466|ref|YP_004038353.1| - 0.033 13.3 0.1 2.7 7.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MR_MLE_C PF13378.1 gi|313122467|ref|YP_004038354.1| - 2.8e-20 72.3 0.5 1.2e-19 70.2 0.3 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|313122467|ref|YP_004038354.1| - 7.8e-15 54.8 0.0 3.1e-13 49.7 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|313122467|ref|YP_004038354.1| - 1.6e-14 54.1 0.1 1.1e-13 51.5 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Creatininase PF02633.9 gi|313122468|ref|YP_004038355.1| - 8.6e-63 211.5 0.3 1e-62 211.3 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PRC PF05239.11 gi|313122469|ref|YP_004038356.1| - 8.3e-10 38.4 0.2 9.9e-10 38.1 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain PAS_3 PF08447.6 gi|313122471|ref|YP_004038358.1| - 2.8e-26 91.4 0.2 8.3e-14 51.4 0.0 3.2 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|313122471|ref|YP_004038358.1| - 7.7e-23 80.8 7.0 2.2e-08 34.4 0.0 5.5 6 1 0 6 6 6 3 PAS domain HATPase_c PF02518.21 gi|313122471|ref|YP_004038358.1| - 2.6e-20 72.2 1.2 6e-20 71.0 0.1 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|313122471|ref|YP_004038358.1| - 5.1e-18 64.8 4.0 2.5e-08 33.6 0.0 4.7 4 0 0 4 4 4 2 PAS fold PAS_4 PF08448.5 gi|313122471|ref|YP_004038358.1| - 1.4e-16 60.4 8.5 4e-07 30.0 0.0 5.3 4 1 0 4 4 4 2 PAS fold Response_reg PF00072.19 gi|313122471|ref|YP_004038358.1| - 5.1e-16 58.6 0.0 1.9e-15 56.8 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|313122471|ref|YP_004038358.1| - 3.3e-13 49.4 4.7 7.2e-13 48.3 1.2 3.2 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|313122471|ref|YP_004038358.1| - 3.8e-13 48.7 0.0 4.2e-06 26.4 0.0 4.1 4 0 0 4 4 4 2 PAS domain GAF_3 PF13492.1 gi|313122471|ref|YP_004038358.1| - 2.2e-09 37.4 0.2 1.2e-08 35.1 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|313122471|ref|YP_004038358.1| - 4.4e-08 33.7 0.9 1.7e-07 31.8 0.1 2.5 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.1 gi|313122471|ref|YP_004038358.1| - 7.6e-06 25.8 0.0 0.0031 17.4 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|313122471|ref|YP_004038358.1| - 0.0002 21.4 0.1 0.00066 19.8 0.0 1.9 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|313122471|ref|YP_004038358.1| - 0.00085 19.3 0.6 0.011 15.8 0.0 2.7 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|313122471|ref|YP_004038358.1| - 0.0015 18.1 0.0 0.0044 16.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3391 PF11871.3 gi|313122471|ref|YP_004038358.1| - 0.24 11.6 4.0 0.15 12.2 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3391) PAS_7 PF12860.2 gi|313122471|ref|YP_004038358.1| - 0.44 10.5 7.0 8 6.5 0.0 5.0 5 1 1 6 6 6 0 PAS fold Spo0M PF07070.6 gi|313122472|ref|YP_004038359.1| - 4.7e-69 232.0 0.0 5.6e-69 231.8 0.0 1.0 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.17 gi|313122472|ref|YP_004038359.1| - 0.009 16.1 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 Arrestin (or S-antigen), C-terminal domain Cohesin PF00963.13 gi|313122472|ref|YP_004038359.1| - 0.086 12.7 0.3 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 Cohesin domain HTH_IclR PF09339.5 gi|313122473|ref|YP_004038360.1| - 6.2e-05 22.5 0.0 0.00015 21.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313122473|ref|YP_004038360.1| - 0.00095 18.7 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|313122473|ref|YP_004038360.1| - 0.01 15.2 0.0 0.018 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313122473|ref|YP_004038360.1| - 0.026 14.2 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313122473|ref|YP_004038360.1| - 0.063 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Aldo_ket_red PF00248.16 gi|313122474|ref|YP_004038361.1| - 1.8e-67 227.1 0.0 2e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MCPsignal PF00015.16 gi|313122475|ref|YP_004038362.1| - 3.6e-45 154.1 60.6 1.7e-42 145.3 27.0 2.7 2 1 1 3 3 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.1 gi|313122475|ref|YP_004038362.1| - 3.8e-44 151.5 0.4 3.8e-44 151.5 0.3 2.1 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313122475|ref|YP_004038362.1| - 2.5e-32 112.8 1.2 5.1e-32 111.8 0.8 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313122475|ref|YP_004038362.1| - 0.00036 19.9 0.0 0.5 9.6 0.0 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein HAMP PF00672.20 gi|313122475|ref|YP_004038362.1| - 0.00058 19.9 0.1 0.00058 19.9 0.1 4.2 4 0 0 4 4 4 1 HAMP domain DUF2130 PF09903.4 gi|313122475|ref|YP_004038362.1| - 0.0058 15.3 4.3 0.026 13.2 0.6 2.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2130) Laminin_II PF06009.7 gi|313122475|ref|YP_004038362.1| - 0.04 13.6 37.3 0.85 9.3 2.1 5.0 2 2 2 4 4 4 0 Laminin Domain II CK2S PF15011.1 gi|313122475|ref|YP_004038362.1| - 0.099 12.4 16.8 4.3 7.1 0.7 6.1 2 1 3 6 6 6 0 Casein Kinase 2 substrate AAA_13 PF13166.1 gi|313122475|ref|YP_004038362.1| - 0.17 10.3 24.2 0.72 8.2 3.8 2.1 1 1 1 2 2 2 0 AAA domain DUF948 PF06103.6 gi|313122475|ref|YP_004038362.1| - 0.47 10.3 31.7 0.28 11.0 1.4 5.2 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.4 gi|313122475|ref|YP_004038362.1| - 0.77 8.6 13.0 1.8 7.4 3.8 2.4 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Mod_r PF07200.8 gi|313122475|ref|YP_004038362.1| - 1.4 8.8 15.0 3 7.7 2.1 4.2 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein BAR_2 PF10455.4 gi|313122475|ref|YP_004038362.1| - 1.7 7.4 15.8 0.86 8.4 1.7 2.6 2 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking COG2 PF06148.6 gi|313122475|ref|YP_004038362.1| - 2.5 7.9 22.5 0.61 9.9 1.5 4.3 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Seryl_tRNA_N PF02403.17 gi|313122475|ref|YP_004038362.1| - 3.3 7.7 23.1 14 5.7 3.1 5.0 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Syntaxin PF00804.20 gi|313122475|ref|YP_004038362.1| - 6.2 7.0 24.8 2.3 8.4 3.9 3.6 1 1 2 3 3 3 0 Syntaxin GM_CSF PF01109.12 gi|313122475|ref|YP_004038362.1| - 6.3 6.7 5.6 11 5.9 0.3 3.3 2 1 0 3 3 3 0 Granulocyte-macrophage colony-stimulating factor V_ATPase_I PF01496.14 gi|313122475|ref|YP_004038362.1| - 6.8 4.4 16.8 1.9 6.2 5.8 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.7 gi|313122475|ref|YP_004038362.1| - 7 6.4 23.4 1.5 8.6 1.0 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) adh_short PF00106.20 gi|313122476|ref|YP_004038363.1| - 7.9e-39 133.2 2.5 1.2e-38 132.6 1.8 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313122476|ref|YP_004038363.1| - 5e-30 105.0 0.1 6.6e-30 104.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313122476|ref|YP_004038363.1| - 4.3e-16 59.1 0.5 5.7e-16 58.6 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313122476|ref|YP_004038363.1| - 2.3e-06 27.2 0.2 3.5e-06 26.6 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|313122476|ref|YP_004038363.1| - 0.00026 21.0 1.0 0.00035 20.6 0.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|313122476|ref|YP_004038363.1| - 0.0039 16.1 0.1 0.0067 15.3 0.1 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|313122476|ref|YP_004038363.1| - 0.0057 16.4 0.5 0.013 15.3 0.3 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase THF_DHG_CYH_C PF02882.14 gi|313122476|ref|YP_004038363.1| - 0.0087 15.1 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.12 gi|313122476|ref|YP_004038363.1| - 0.021 15.2 0.2 0.049 14.0 0.2 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF217 PF02697.9 gi|313122477|ref|YP_004038364.1| - 3.6e-14 52.7 0.3 4.3e-14 52.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|313122477|ref|YP_004038364.1| - 0.019 14.8 2.4 2.9 7.9 0.0 3.0 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family DUF883 PF05957.8 gi|313122477|ref|YP_004038364.1| - 0.062 13.6 1.2 0.062 13.6 0.8 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) PIN PF01850.16 gi|313122478|ref|YP_004038365.1| - 1.9e-12 47.5 0.0 2.2e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|313122478|ref|YP_004038365.1| - 0.00031 21.4 0.1 0.00037 21.1 0.1 1.3 1 1 0 1 1 1 1 PIN domain Acyl-CoA_dh_1 PF00441.19 gi|313122479|ref|YP_004038366.1| - 1.8e-38 132.0 1.0 2.5e-38 131.5 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313122479|ref|YP_004038366.1| - 1.7e-19 70.4 0.5 5e-19 68.9 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|313122479|ref|YP_004038366.1| - 1.8e-16 60.5 0.9 3.8e-16 59.5 0.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313122479|ref|YP_004038366.1| - 2.4e-16 58.9 0.0 4.8e-16 57.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|313122479|ref|YP_004038366.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal APH PF01636.18 gi|313122480|ref|YP_004038367.1| - 9.1e-44 149.9 8.1 1.2e-43 149.5 5.6 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|313122480|ref|YP_004038367.1| - 1.9e-05 23.9 0.0 3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|313122480|ref|YP_004038367.1| - 0.025 13.2 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Choline_kinase PF01633.15 gi|313122480|ref|YP_004038367.1| - 0.09 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase ABC_tran PF00005.22 gi|313122481|ref|YP_004038368.1| - 1.1e-27 97.0 0.0 1.4e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122481|ref|YP_004038368.1| - 2.1e-14 54.2 0.0 6.4e-09 36.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313122481|ref|YP_004038368.1| - 0.005 16.3 0.4 0.011 15.2 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|313122481|ref|YP_004038368.1| - 0.0078 15.2 0.0 0.022 13.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122481|ref|YP_004038368.1| - 0.0079 16.3 0.1 0.077 13.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|313122481|ref|YP_004038368.1| - 0.012 15.9 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|313122481|ref|YP_004038368.1| - 0.034 14.0 0.0 0.068 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313122481|ref|YP_004038368.1| - 0.036 13.9 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|313122481|ref|YP_004038368.1| - 0.039 14.1 0.1 0.23 11.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|313122481|ref|YP_004038368.1| - 0.055 11.9 0.0 1.3 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|313122481|ref|YP_004038368.1| - 0.058 12.9 0.2 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313122481|ref|YP_004038368.1| - 0.13 11.6 1.3 0.61 9.4 0.4 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|313122481|ref|YP_004038368.1| - 0.25 11.3 1.5 1.6 8.6 0.1 2.5 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|313122481|ref|YP_004038368.1| - 0.4 10.1 1.8 0.41 10.0 0.5 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TIM-br_sig_trns PF09370.5 gi|313122482|ref|YP_004038369.1| - 0.036 13.1 0.1 0.068 12.2 0.1 1.4 1 0 0 1 1 1 0 TIM-barrel signal transduction protein Pox_A9 PF04835.7 gi|313122482|ref|YP_004038369.1| - 1.1 9.2 5.9 0.12 12.3 0.5 2.1 2 0 0 2 2 2 0 A9 protein conserved region EpuA PF11772.3 gi|313122482|ref|YP_004038369.1| - 4.5 6.7 12.1 0.4 10.1 3.8 2.9 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta HTH_Tnp_Tc3_2 PF01498.13 gi|313122483|ref|YP_004038370.1| - 0.00017 21.5 0.3 0.00035 20.5 0.2 1.5 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.1 gi|313122483|ref|YP_004038370.1| - 0.00052 20.7 0.8 0.0025 18.5 0.2 2.2 2 1 1 3 3 3 1 Homeodomain-like domain PHZA_PHZB PF03284.8 gi|313122483|ref|YP_004038370.1| - 0.013 14.6 1.0 0.4 9.7 0.4 2.1 1 1 1 2 2 2 0 Phenazine biosynthesis protein A/B HTH_24 PF13412.1 gi|313122483|ref|YP_004038370.1| - 0.022 14.1 0.1 0.073 12.4 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122483|ref|YP_004038370.1| - 0.17 11.4 1.5 0.51 9.9 1.1 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Acyl-CoA_dh_1 PF00441.19 gi|313122484|ref|YP_004038371.1| - 7.2e-50 168.9 3.2 1.1e-49 168.3 2.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|313122484|ref|YP_004038371.1| - 2.9e-30 105.1 0.3 2.9e-30 105.1 0.2 2.0 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|313122484|ref|YP_004038371.1| - 9.4e-25 87.4 8.5 1.5e-24 86.7 5.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313122484|ref|YP_004038371.1| - 2.2e-23 81.5 1.0 5.2e-23 80.3 0.2 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|313122484|ref|YP_004038371.1| - 0.0018 17.7 4.6 0.0072 15.7 1.0 2.8 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.23 gi|313122485|ref|YP_004038372.1| - 7.3e-106 354.0 0.0 8.7e-106 353.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313122485|ref|YP_004038372.1| - 7e-20 71.7 0.7 1.6e-19 70.6 0.5 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ADP_ribosyl_GH PF03747.9 gi|313122486|ref|YP_004038373.1| - 8.1e-65 219.4 0.2 9.4e-65 219.2 0.2 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_Omp PF13488.1 gi|313122486|ref|YP_004038373.1| - 0.028 14.0 3.5 0.16 11.6 0.3 2.3 2 0 0 2 2 2 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|313122486|ref|YP_004038373.1| - 0.2 11.1 5.7 1 8.9 0.9 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|313122486|ref|YP_004038373.1| - 0.61 9.7 7.9 1.4 8.6 2.3 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain NPP1 PF05630.6 gi|313122489|ref|YP_004038376.1| - 0.001 18.8 0.2 0.0031 17.2 0.1 1.7 2 0 0 2 2 2 1 Necrosis inducing protein (NPP1) ADH_N PF08240.7 gi|313122490|ref|YP_004038377.1| - 2e-26 91.8 0.9 4.1e-26 90.8 0.6 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|313122490|ref|YP_004038377.1| - 1.5e-22 79.5 0.5 2.5e-22 78.8 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|313122490|ref|YP_004038377.1| - 0.0032 17.0 0.5 0.0071 15.9 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|313122490|ref|YP_004038377.1| - 0.0094 16.5 0.1 0.023 15.2 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain ELFV_dehydrog PF00208.16 gi|313122490|ref|YP_004038377.1| - 0.019 14.5 0.2 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SIS_2 PF13580.1 gi|313122490|ref|YP_004038377.1| - 0.031 13.9 0.1 0.053 13.2 0.1 1.3 1 0 0 1 1 1 0 SIS domain Methyltransf_11 PF08241.7 gi|313122490|ref|YP_004038377.1| - 0.04 14.4 0.1 0.14 12.6 0.1 1.9 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|313122490|ref|YP_004038377.1| - 0.076 13.0 0.2 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|313122490|ref|YP_004038377.1| - 0.094 11.8 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1418 PF07214.7 gi|313122491|ref|YP_004038378.1| - 1.5 8.5 4.2 0.79 9.3 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) DZR PF12773.2 gi|313122492|ref|YP_004038379.1| - 0.005 16.6 0.3 0.0063 16.3 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|313122492|ref|YP_004038379.1| - 0.0078 15.3 1.3 0.18 11.0 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313122492|ref|YP_004038379.1| - 0.033 13.9 1.9 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313122492|ref|YP_004038379.1| - 0.042 13.4 1.9 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Opy2 PF09463.5 gi|313122492|ref|YP_004038379.1| - 0.057 13.5 2.4 2.7 8.1 0.0 2.1 2 0 0 2 2 2 0 Opy2 protein FYVE PF01363.16 gi|313122492|ref|YP_004038379.1| - 0.09 12.6 0.7 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 FYVE zinc finger WCCH PF03716.9 gi|313122492|ref|YP_004038379.1| - 0.095 12.1 0.7 0.095 12.1 0.5 2.1 2 0 0 2 2 2 0 WCCH motif zf-DNL PF05180.7 gi|313122492|ref|YP_004038379.1| - 0.097 12.4 0.7 0.12 12.1 0.5 1.2 1 0 0 1 1 1 0 DNL zinc finger zf-RING_3 PF14369.1 gi|313122492|ref|YP_004038379.1| - 0.14 12.1 4.5 0.87 9.6 3.2 1.9 1 1 1 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|313122492|ref|YP_004038379.1| - 0.19 11.4 3.4 2 8.1 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|313122492|ref|YP_004038379.1| - 0.28 11.1 3.3 1.4 8.9 2.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|313122492|ref|YP_004038379.1| - 1.3 8.7 4.2 2 8.1 0.7 2.3 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger PMSR PF01625.16 gi|313122493|ref|YP_004038380.1| - 1.7e-66 222.9 0.2 2e-66 222.7 0.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.1 gi|313122493|ref|YP_004038380.1| - 0.11 12.3 0.6 0.19 11.6 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) NUDIX PF00293.23 gi|313122494|ref|YP_004038381.1| - 0.031 13.9 0.2 0.048 13.3 0.2 1.3 1 0 0 1 1 1 0 NUDIX domain MFS_1 PF07690.11 gi|313122495|ref|YP_004038382.1| - 1.6e-40 138.8 57.4 1e-27 96.8 20.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|313122495|ref|YP_004038382.1| - 7.9e-06 24.5 10.7 7.9e-06 24.5 7.4 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein DUF1228 PF06779.9 gi|313122495|ref|YP_004038382.1| - 0.013 15.5 0.3 0.013 15.5 0.2 4.4 4 2 0 4 4 4 0 Protein of unknown function (DUF1228) LacY_symp PF01306.14 gi|313122495|ref|YP_004038382.1| - 0.21 10.1 11.3 0.009 14.6 2.6 2.3 2 1 0 3 3 3 0 LacY proton/sugar symporter adh_short_C2 PF13561.1 gi|313122496|ref|YP_004038383.1| - 3.6e-22 79.3 0.0 4.3e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|313122496|ref|YP_004038383.1| - 6.2e-20 71.7 2.2 8.9e-20 71.2 1.3 1.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|313122496|ref|YP_004038383.1| - 6e-10 39.0 0.1 1.3e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|313122496|ref|YP_004038383.1| - 0.075 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|313122496|ref|YP_004038383.1| - 0.27 11.1 2.9 1.1 9.2 2.0 1.8 1 1 0 1 1 1 0 NADH(P)-binding TetR_N PF00440.18 gi|313122498|ref|YP_004038385.1| - 1.1e-13 50.6 0.2 2.4e-13 49.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|313122498|ref|YP_004038385.1| - 1.6e-10 41.0 0.7 2.6e-10 40.3 0.5 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor HTH_10 PF04967.7 gi|313122498|ref|YP_004038385.1| - 0.027 14.0 0.1 0.086 12.4 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.1 gi|313122498|ref|YP_004038385.1| - 0.032 13.6 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Roughex PF06020.6 gi|313122498|ref|YP_004038385.1| - 0.035 12.8 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Drosophila roughex protein MatE PF01554.13 gi|313122499|ref|YP_004038386.1| - 1.3e-65 219.9 31.1 1.8e-38 131.7 7.3 2.4 2 0 0 2 2 2 2 MatE Glyco_hydro_43 PF04616.9 gi|313122499|ref|YP_004038386.1| - 0.035 13.2 0.0 0.048 12.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 Pmp3 PF01679.12 gi|313122499|ref|YP_004038386.1| - 0.066 12.9 3.1 0.25 11.0 0.1 2.9 1 1 1 2 2 2 0 Proteolipid membrane potential modulator Polysacc_synt_C PF14667.1 gi|313122499|ref|YP_004038386.1| - 0.5 10.1 48.6 0.029 14.1 14.8 5.0 3 2 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Peptidase_M50 PF02163.17 gi|313122500|ref|YP_004038387.1| - 6e-16 57.9 4.7 8.8e-15 54.1 2.1 2.6 2 1 0 2 2 2 1 Peptidase family M50 RHH_1 PF01402.16 gi|313122501|ref|YP_004038388.1| - 0.088 12.7 0.1 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family TrmB PF01978.14 gi|313122503|ref|YP_004038390.1| - 4e-18 64.8 0.1 6.4e-18 64.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|313122503|ref|YP_004038390.1| - 0.012 15.2 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.9 gi|313122503|ref|YP_004038390.1| - 0.036 13.8 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Chromo PF00385.19 gi|313122503|ref|YP_004038390.1| - 0.077 12.6 0.0 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Chromo (CHRromatin Organisation MOdifier) domain RseA_N PF03872.8 gi|313122503|ref|YP_004038390.1| - 0.081 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Anti sigma-E protein RseA, N-terminal domain Blo-t-5 PF11642.3 gi|313122503|ref|YP_004038390.1| - 0.082 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Mite allergen Blo t 5 z-alpha PF02295.12 gi|313122503|ref|YP_004038390.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Multi_Drug_Res PF00893.14 gi|313122504|ref|YP_004038391.1| - 6.1e-27 93.9 4.0 8.2e-27 93.5 2.8 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|313122504|ref|YP_004038391.1| - 4.9e-06 26.7 6.3 6.6e-06 26.3 4.4 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|313122504|ref|YP_004038391.1| - 0.014 15.4 9.3 0.02 14.9 6.4 1.4 1 1 0 1 1 1 0 EamA-like transporter family TPT PF03151.11 gi|313122504|ref|YP_004038391.1| - 5.9 6.5 8.3 0.57 9.8 2.2 1.8 2 1 0 2 2 2 0 Triose-phosphate Transporter family DUF981 PF06168.6 gi|313122504|ref|YP_004038391.1| - 6.8 6.4 11.0 62 3.2 7.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DDE_Tnp_1 PF01609.16 gi|313122505|ref|YP_004038392.1| - 6e-09 35.7 0.3 1.2e-08 34.7 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|313122505|ref|YP_004038392.1| - 7.9e-09 35.3 0.6 3.6e-07 30.0 0.0 2.7 2 0 0 2 2 2 1 Transposase domain (DUF772) PhageP22-tail PF09251.5 gi|313122505|ref|YP_004038392.1| - 0.012 13.8 0.0 0.019 13.2 0.0 1.2 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike DDE_Tnp_1_2 PF13586.1 gi|313122505|ref|YP_004038392.1| - 0.036 14.2 0.1 0.37 10.9 0.0 2.5 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.1 gi|313122508|ref|YP_004038395.1| - 4.3e-28 98.0 0.0 8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|313122508|ref|YP_004038395.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|313122508|ref|YP_004038395.1| - 0.0039 16.4 0.1 0.0076 15.4 0.1 1.4 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|313122508|ref|YP_004038395.1| - 0.0062 16.6 0.2 0.021 14.9 0.0 2.0 2 1 0 2 2 2 1 Integrase core domain HTH_28 PF13518.1 gi|313122508|ref|YP_004038395.1| - 0.031 14.3 0.1 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_3 PF13358.1 gi|313122508|ref|YP_004038395.1| - 0.032 13.9 0.0 0.32 10.7 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease DUF3792 PF12670.2 gi|313122510|ref|YP_004038397.1| - 0.0037 17.0 3.6 0.0044 16.8 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) GPI2 PF06432.6 gi|313122510|ref|YP_004038397.1| - 0.011 15.0 1.1 0.012 14.9 0.8 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase FeoB_C PF07664.7 gi|313122510|ref|YP_004038397.1| - 0.028 13.8 4.3 0.11 11.9 0.2 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus RseC_MucC PF04246.7 gi|313122510|ref|YP_004038397.1| - 0.03 13.8 2.0 0.036 13.6 1.4 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3043 PF11241.3 gi|313122510|ref|YP_004038397.1| - 0.073 12.6 1.5 0.076 12.5 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) FixQ PF05545.6 gi|313122510|ref|YP_004038397.1| - 0.26 10.9 3.8 7.3 6.3 0.9 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4229 PF14012.1 gi|313122510|ref|YP_004038397.1| - 0.81 9.6 5.8 5.4 6.9 3.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4229) DUF1049 PF06305.6 gi|313122510|ref|YP_004038397.1| - 9.8 5.7 7.0 10 5.6 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Toxin-deaminase PF14424.1 gi|313122511|ref|YP_004038398.1| - 0.097 12.6 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases Acyl-CoA_dh_2 PF08028.6 gi|313122511|ref|YP_004038398.1| - 0.16 12.2 0.7 0.2 11.9 0.5 1.1 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain SBP_bac_5 PF00496.17 gi|313122512|ref|YP_004038399.1| - 8.2e-66 222.3 2.0 9.8e-66 222.0 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|313122513|ref|YP_004038400.1| - 8.1e-38 129.7 10.8 8.1e-38 129.7 7.5 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3561 PF12084.3 gi|313122513|ref|YP_004038400.1| - 0.062 13.1 0.1 0.062 13.1 0.1 2.9 3 1 1 4 4 4 0 Protein of unknown function (DUF3561) BPD_transp_1 PF00528.17 gi|313122514|ref|YP_004038401.1| - 4.1e-31 107.9 9.7 4.1e-31 107.9 6.7 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313122514|ref|YP_004038401.1| - 2.7e-08 33.0 6.2 6.9e-08 31.7 0.0 2.8 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|313122515|ref|YP_004038402.1| - 1.3e-27 96.7 0.0 1.8e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122515|ref|YP_004038402.1| - 2.1e-15 56.7 0.4 4.5e-15 55.7 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122515|ref|YP_004038402.1| - 2.8e-07 30.8 0.0 1.6e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313122515|ref|YP_004038402.1| - 1.8e-06 28.1 0.1 0.00032 20.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122515|ref|YP_004038402.1| - 0.0023 17.3 0.1 0.0047 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313122515|ref|YP_004038402.1| - 0.008 15.4 0.1 0.19 10.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|313122515|ref|YP_004038402.1| - 0.014 14.8 0.2 1 8.7 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|313122515|ref|YP_004038402.1| - 0.072 13.0 3.3 0.35 10.8 2.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|313122515|ref|YP_004038402.1| - 0.092 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|313122515|ref|YP_004038402.1| - 0.12 11.7 0.4 0.39 10.0 0.3 1.8 1 1 0 1 1 1 0 AAA-like domain AIG1 PF04548.11 gi|313122515|ref|YP_004038402.1| - 0.17 10.9 0.2 0.41 9.7 0.0 1.7 2 0 0 2 2 2 0 AIG1 family ABC_tran PF00005.22 gi|313122516|ref|YP_004038403.1| - 4e-30 104.9 0.0 5.4e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122516|ref|YP_004038403.1| - 7.5e-21 74.2 3.2 1.4e-20 73.3 2.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122516|ref|YP_004038403.1| - 2.9e-09 37.3 0.0 2e-06 27.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313122516|ref|YP_004038403.1| - 5.7e-09 36.2 0.2 1e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|313122516|ref|YP_004038403.1| - 7.9e-05 22.8 0.1 0.00039 20.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313122516|ref|YP_004038403.1| - 0.0019 17.3 0.0 0.0033 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|313122516|ref|YP_004038403.1| - 0.0029 16.1 0.0 0.085 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|313122516|ref|YP_004038403.1| - 0.0033 17.1 0.3 0.14 11.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|313122516|ref|YP_004038403.1| - 0.0045 16.8 0.1 0.013 15.4 0.1 1.7 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313122516|ref|YP_004038403.1| - 0.0088 15.4 0.2 0.018 14.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|313122516|ref|YP_004038403.1| - 0.009 16.3 0.0 0.026 14.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|313122516|ref|YP_004038403.1| - 0.012 15.8 0.1 0.092 12.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|313122516|ref|YP_004038403.1| - 0.013 15.5 0.0 0.065 13.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|313122516|ref|YP_004038403.1| - 0.016 14.7 0.0 0.47 9.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|313122516|ref|YP_004038403.1| - 0.019 15.7 0.0 0.041 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|313122516|ref|YP_004038403.1| - 0.024 14.1 0.1 0.042 13.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|313122516|ref|YP_004038403.1| - 0.027 14.6 0.0 0.056 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.16 gi|313122516|ref|YP_004038403.1| - 0.032 13.3 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.20 gi|313122516|ref|YP_004038403.1| - 0.038 13.4 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|313122516|ref|YP_004038403.1| - 0.077 12.6 0.2 0.15 11.7 0.2 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|313122516|ref|YP_004038403.1| - 0.08 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|313122516|ref|YP_004038403.1| - 0.082 12.3 0.1 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|313122516|ref|YP_004038403.1| - 0.12 11.2 0.1 0.2 10.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.15 gi|313122516|ref|YP_004038403.1| - 0.12 12.0 0.2 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CoaE PF01121.15 gi|313122516|ref|YP_004038403.1| - 0.15 11.4 0.0 1.7 7.9 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase Pyr_redox_2 PF07992.9 gi|313122517|ref|YP_004038404.1| - 4e-08 33.3 1.7 7.4e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313122517|ref|YP_004038404.1| - 1.4e-06 27.3 3.0 0.004 16.0 0.2 2.2 1 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|313122517|ref|YP_004038404.1| - 4.3e-06 25.8 2.4 0.00051 19.0 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313122517|ref|YP_004038404.1| - 5.1e-06 26.4 0.2 1.1e-05 25.3 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313122517|ref|YP_004038404.1| - 7.7e-06 24.6 0.0 7.8e-05 21.3 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|313122517|ref|YP_004038404.1| - 6.2e-05 22.0 0.0 9.1e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|313122517|ref|YP_004038404.1| - 0.00035 19.7 0.0 0.0019 17.3 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|313122517|ref|YP_004038404.1| - 0.0013 17.8 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|313122517|ref|YP_004038404.1| - 0.0014 18.6 0.7 0.55 10.2 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|313122517|ref|YP_004038404.1| - 0.0018 17.4 0.2 0.0037 16.4 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|313122517|ref|YP_004038404.1| - 0.028 13.3 0.1 0.061 12.2 0.0 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|313122517|ref|YP_004038404.1| - 0.028 14.1 1.0 1.1 9.0 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|313122517|ref|YP_004038404.1| - 0.036 13.7 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|313122517|ref|YP_004038404.1| - 0.073 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-ph_phosp PF04029.9 gi|313122517|ref|YP_004038404.1| - 0.15 11.0 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase AP_endonuc_2 PF01261.19 gi|313122518|ref|YP_004038405.1| - 8.1e-20 71.0 2.7 1.2e-19 70.4 1.9 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|313122519|ref|YP_004038406.1| - 3.1e-08 33.9 0.5 4.6e-08 33.3 0.3 1.3 1 1 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.22 gi|313122520|ref|YP_004038407.1| - 1.3e-29 103.2 0.0 1.7e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122520|ref|YP_004038407.1| - 1.8e-15 57.0 0.3 3.2e-15 56.2 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122520|ref|YP_004038407.1| - 3.6e-07 30.4 0.1 0.0038 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|313122520|ref|YP_004038407.1| - 0.00053 20.1 0.5 0.0043 17.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|313122520|ref|YP_004038407.1| - 0.0053 15.6 0.0 0.0066 15.3 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.1 gi|313122520|ref|YP_004038407.1| - 0.023 14.2 0.1 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|313122520|ref|YP_004038407.1| - 0.079 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|313122520|ref|YP_004038407.1| - 0.08 12.9 0.6 0.17 11.8 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|313122520|ref|YP_004038407.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|313122520|ref|YP_004038407.1| - 0.12 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313122520|ref|YP_004038407.1| - 0.14 11.6 0.2 2.5 7.4 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|313122520|ref|YP_004038407.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|313122520|ref|YP_004038407.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|313122520|ref|YP_004038407.1| - 0.16 11.0 0.0 0.48 9.4 0.0 1.7 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|313122520|ref|YP_004038407.1| - 0.19 11.3 0.2 0.32 10.6 0.1 1.3 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|313122520|ref|YP_004038407.1| - 0.26 11.2 1.4 6.8 6.6 1.0 2.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|313122521|ref|YP_004038408.1| - 1.1e-23 84.0 0.0 1.5e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313122521|ref|YP_004038408.1| - 1.3e-19 70.3 0.6 2.5e-19 69.3 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313122521|ref|YP_004038408.1| - 2.9e-11 43.8 0.5 3.7e-08 33.6 0.2 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313122521|ref|YP_004038408.1| - 0.00063 19.7 0.3 0.0014 18.6 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|313122521|ref|YP_004038408.1| - 0.00065 18.9 0.8 0.84 8.8 0.1 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313122521|ref|YP_004038408.1| - 0.0019 18.3 0.3 0.018 15.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313122521|ref|YP_004038408.1| - 0.0041 16.2 0.2 0.16 11.0 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|313122521|ref|YP_004038408.1| - 0.0092 16.3 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313122521|ref|YP_004038408.1| - 0.019 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|313122521|ref|YP_004038408.1| - 0.022 13.5 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_25 PF13481.1 gi|313122521|ref|YP_004038408.1| - 0.023 14.0 0.0 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|313122521|ref|YP_004038408.1| - 0.025 14.2 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|313122521|ref|YP_004038408.1| - 0.049 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|313122521|ref|YP_004038408.1| - 0.091 12.1 0.0 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|313122521|ref|YP_004038408.1| - 0.12 11.5 0.1 0.26 10.4 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|313122521|ref|YP_004038408.1| - 0.13 11.6 0.1 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|313122521|ref|YP_004038408.1| - 0.16 10.4 0.5 1 7.8 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|313122522|ref|YP_004038409.1| - 1.9e-23 82.9 17.1 1.9e-23 82.9 11.8 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313122523|ref|YP_004038410.1| - 5.9e-36 123.7 11.5 5.9e-36 123.7 8.0 2.0 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|313122524|ref|YP_004038411.1| - 2.9e-39 134.9 6.2 4.1e-39 134.4 4.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313122524|ref|YP_004038411.1| - 0.092 12.7 1.0 0.17 11.9 0.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HEAT_2 PF13646.1 gi|313122526|ref|YP_004038413.1| - 1.1e-18 67.3 28.7 7.8e-11 42.1 1.8 4.1 2 2 2 4 4 4 4 HEAT repeats HEAT PF02985.17 gi|313122526|ref|YP_004038413.1| - 2.4e-11 42.7 9.1 0.3 11.2 0.0 6.4 7 0 0 7 7 7 4 HEAT repeat Adaptin_N PF01602.15 gi|313122526|ref|YP_004038413.1| - 2.4e-06 26.1 2.9 0.00033 19.1 0.4 2.1 1 1 0 2 2 2 2 Adaptin N terminal region HEAT_EZ PF13513.1 gi|313122526|ref|YP_004038413.1| - 9.3e-06 25.9 23.0 0.033 14.6 0.3 5.6 3 2 3 6 6 6 4 HEAT-like repeat HEAT_PBS PF03130.11 gi|313122526|ref|YP_004038413.1| - 0.00076 19.7 9.9 0.99 10.0 0.1 6.1 6 2 0 6 6 6 2 PBS lyase HEAT-like repeat DUF3730 PF12530.3 gi|313122526|ref|YP_004038413.1| - 0.001 19.0 0.9 0.31 10.9 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3730) Cnd1 PF12717.2 gi|313122526|ref|YP_004038413.1| - 0.0074 16.1 0.0 0.073 12.9 0.0 2.3 2 1 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 TINF2_N PF14973.1 gi|313122526|ref|YP_004038413.1| - 0.018 15.1 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus Arm PF00514.18 gi|313122526|ref|YP_004038413.1| - 0.02 14.7 0.0 0.02 14.7 0.0 3.7 5 0 0 5 5 5 0 Armadillo/beta-catenin-like repeat Nipped-B_C PF12830.2 gi|313122526|ref|YP_004038413.1| - 0.02 14.5 1.5 0.21 11.2 0.1 2.7 3 0 0 3 3 3 0 Sister chromatid cohesion C-terminus MR_MLE_C PF13378.1 gi|313122527|ref|YP_004038414.1| - 2.8e-32 110.9 0.0 4.9e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|313122527|ref|YP_004038414.1| - 6.4e-27 93.8 0.0 1.3e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|313122527|ref|YP_004038414.1| - 3.3e-11 43.5 0.0 7e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NanE PF04131.9 gi|313122527|ref|YP_004038414.1| - 0.038 12.9 0.1 0.071 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase IclR PF01614.13 gi|313122528|ref|YP_004038415.1| - 1.5e-23 82.9 0.0 2.2e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313122528|ref|YP_004038415.1| - 1.2e-12 47.1 0.4 9.4e-12 44.3 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313122528|ref|YP_004038415.1| - 2.6e-07 30.3 0.0 5.6e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|313122528|ref|YP_004038415.1| - 6.2e-07 29.0 0.0 2.1e-06 27.3 0.0 1.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|313122528|ref|YP_004038415.1| - 8.2e-07 28.5 0.0 1.8e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|313122528|ref|YP_004038415.1| - 3.9e-06 26.1 0.0 8.8e-06 25.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|313122528|ref|YP_004038415.1| - 1.7e-05 24.4 0.0 2.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|313122528|ref|YP_004038415.1| - 2.3e-05 23.9 0.0 5.2e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|313122528|ref|YP_004038415.1| - 0.0047 16.8 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|313122528|ref|YP_004038415.1| - 0.0087 16.1 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|313122528|ref|YP_004038415.1| - 0.015 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|313122528|ref|YP_004038415.1| - 0.018 14.6 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_DeoR PF08220.7 gi|313122528|ref|YP_004038415.1| - 0.027 14.0 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|313122528|ref|YP_004038415.1| - 0.042 13.3 0.1 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Acetyltransf_7 PF13508.1 gi|313122529|ref|YP_004038416.1| - 1.7e-07 31.2 0.0 8.1e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313122529|ref|YP_004038416.1| - 1.1e-06 28.5 0.0 4.4e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|313122529|ref|YP_004038416.1| - 4.6e-05 23.2 0.0 0.034 14.0 0.0 2.6 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313122529|ref|YP_004038416.1| - 4.8e-05 23.0 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|313122529|ref|YP_004038416.1| - 0.0011 18.8 0.1 0.021 14.7 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|313122529|ref|YP_004038416.1| - 0.0031 17.6 0.0 0.025 14.6 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Phenol_hyd_sub PF06099.6 gi|313122530|ref|YP_004038417.1| - 0.14 12.0 0.2 0.25 11.1 0.1 1.5 1 1 0 1 1 1 0 Phenol hydroxylase subunit Ferritin PF00210.19 gi|313122531|ref|YP_004038418.1| - 1.7e-25 89.3 6.7 2e-25 89.1 4.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2959 PF11172.3 gi|313122531|ref|YP_004038418.1| - 0.0087 15.8 0.7 0.041 13.6 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2959) DUF3572 PF12096.3 gi|313122531|ref|YP_004038418.1| - 0.08 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3572) DUF1664 PF07889.7 gi|313122531|ref|YP_004038418.1| - 0.11 12.2 0.1 0.31 10.8 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF1451 PF07295.6 gi|313122531|ref|YP_004038418.1| - 1.1 9.0 5.0 6 6.6 0.4 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1451) PAS_9 PF13426.1 gi|313122535|ref|YP_004038422.1| - 2.1e-54 182.2 1.4 6.9e-25 87.4 0.1 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|313122535|ref|YP_004038422.1| - 1.3e-35 121.6 2.0 2.2e-16 59.6 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|313122535|ref|YP_004038422.1| - 1.2e-31 108.9 8.5 6.3e-14 51.9 0.1 3.9 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|313122535|ref|YP_004038422.1| - 6.3e-23 79.8 0.0 3.7e-07 29.7 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|313122535|ref|YP_004038422.1| - 1e-20 73.5 0.8 4.1e-09 36.4 0.1 3.7 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|313122535|ref|YP_004038422.1| - 8.8e-18 63.6 0.0 1.8e-17 62.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|313122535|ref|YP_004038422.1| - 1.8e-12 47.9 0.9 7.4e-12 45.9 0.1 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|313122535|ref|YP_004038422.1| - 2.4e-07 31.0 0.0 5.4e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|313122535|ref|YP_004038422.1| - 1.4e-05 25.3 0.1 0.08 13.2 0.0 3.4 3 1 0 3 3 2 2 PAS domain PAS_7 PF12860.2 gi|313122535|ref|YP_004038422.1| - 2.8e-05 24.1 2.4 0.18 11.8 0.0 3.7 3 1 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|313122535|ref|YP_004038422.1| - 9.1e-05 22.5 0.0 0.00025 21.1 0.0 1.8 1 0 0 1 1 1 1 GAF domain DUF2458 PF10454.4 gi|313122535|ref|YP_004038422.1| - 0.015 15.2 0.6 0.11 12.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2458) Sigma70_r4 PF04545.11 gi|313122535|ref|YP_004038422.1| - 0.027 13.7 3.1 0.09 12.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|313122535|ref|YP_004038422.1| - 0.047 13.4 0.0 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 HTH domain FAD_binding_4 PF01565.18 gi|313122536|ref|YP_004038423.1| - 1.9e-37 127.8 2.8 3.2e-37 127.0 2.0 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|313122536|ref|YP_004038423.1| - 1.9e-08 34.0 0.1 3.8e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|313122536|ref|YP_004038423.1| - 0.13 11.3 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding DUF4098 PF13345.1 gi|313122537|ref|YP_004038424.1| - 5.9e-05 22.9 4.9 0.8 9.6 0.1 3.6 1 1 2 3 3 3 3 Domain of unknown function (DUF4098) HtaA PF04213.8 gi|313122537|ref|YP_004038424.1| - 0.00083 19.6 1.3 0.86 9.8 0.1 2.6 1 1 2 3 3 3 3 Htaa DUF3540 PF12059.3 gi|313122537|ref|YP_004038424.1| - 0.0039 16.8 0.0 0.88 9.1 0.0 2.9 1 1 2 3 3 3 1 Protein of unknown function (DUF3540) DUF2807 PF10988.3 gi|313122537|ref|YP_004038424.1| - 0.0074 15.8 2.1 1.8 8.0 0.1 2.8 1 1 0 2 2 2 2 Protein of unknown function (DUF2807) AsmA_2 PF13502.1 gi|313122537|ref|YP_004038424.1| - 0.042 13.1 0.2 0.42 9.9 0.0 2.5 1 1 0 2 2 2 0 AsmA-like C-terminal region HSP20 PF00011.16 gi|313122537|ref|YP_004038424.1| - 0.28 11.0 8.3 0.32 10.8 0.6 3.4 1 1 1 3 3 3 0 Hsp20/alpha crystallin family MinE PF03776.9 gi|313122537|ref|YP_004038424.1| - 0.91 9.0 5.4 2.8 7.4 0.1 3.5 4 0 0 4 4 4 0 Septum formation topological specificity factor MinE Big_3 PF07523.7 gi|313122537|ref|YP_004038424.1| - 2.1 8.4 6.5 0.89 9.6 0.1 3.3 1 1 3 4 4 4 0 Bacterial Ig-like domain (group 3) NAD_binding_10 PF13460.1 gi|313122538|ref|YP_004038425.1| - 1.6e-15 57.5 0.0 3.2e-15 56.6 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313122538|ref|YP_004038425.1| - 7.1e-14 51.6 0.0 1.7e-13 50.3 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|313122538|ref|YP_004038425.1| - 3e-09 36.6 0.0 2.4e-07 30.4 0.0 2.1 1 1 0 2 2 2 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313122538|ref|YP_004038425.1| - 4.1e-05 22.4 0.0 6.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family MarR_2 PF12802.2 gi|313122539|ref|YP_004038426.1| - 2.2e-06 27.2 0.0 1.3e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|313122539|ref|YP_004038426.1| - 3.6e-06 26.4 0.0 1.1e-05 24.9 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313122539|ref|YP_004038426.1| - 0.0011 18.6 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|313122539|ref|YP_004038426.1| - 0.0024 18.1 0.0 0.019 15.3 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.17 gi|313122539|ref|YP_004038426.1| - 0.0055 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313122539|ref|YP_004038426.1| - 0.0062 16.3 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|313122539|ref|YP_004038426.1| - 0.0091 15.9 0.0 0.54 10.2 0.0 2.8 2 1 1 3 3 3 1 Sulfolobus plasmid regulatory protein HTH_5 PF01022.15 gi|313122539|ref|YP_004038426.1| - 0.013 15.1 0.0 0.066 12.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|313122539|ref|YP_004038426.1| - 0.015 14.7 0.0 0.042 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family NBP1 PF08537.5 gi|313122539|ref|YP_004038426.1| - 0.046 12.9 0.1 0.053 12.7 0.0 1.1 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 Glyco_hydro_15 PF00723.16 gi|313122539|ref|YP_004038426.1| - 0.06 11.8 0.1 0.082 11.4 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 15 ABC2_membrane_4 PF12730.2 gi|313122540|ref|YP_004038427.1| - 0.75 8.9 6.6 1.5 7.9 4.6 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2198 PF09964.4 gi|313122540|ref|YP_004038427.1| - 5.6 6.8 6.6 0.74 9.6 0.9 2.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2198) ADH_zinc_N_2 PF13602.1 gi|313122541|ref|YP_004038428.1| - 6e-26 91.8 0.0 1.4e-25 90.6 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|313122541|ref|YP_004038428.1| - 7.1e-19 67.6 0.1 2e-18 66.1 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|313122541|ref|YP_004038428.1| - 2.9e-10 39.8 0.0 1.9e-09 37.2 0.0 2.3 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain PAS_9 PF13426.1 gi|313122543|ref|YP_004038430.1| - 1.2e-20 73.7 0.2 4.5e-15 55.9 0.1 3.1 2 0 0 2 2 2 2 PAS domain HTH_10 PF04967.7 gi|313122543|ref|YP_004038430.1| - 5.7e-19 67.4 0.0 1.4e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|313122543|ref|YP_004038430.1| - 1.1e-17 64.0 4.7 6.9e-10 38.9 0.1 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|313122543|ref|YP_004038430.1| - 4.4e-17 61.8 0.5 5.6e-13 48.6 0.1 3.0 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|313122543|ref|YP_004038430.1| - 3.3e-15 56.8 4.3 9.2e-12 45.6 0.0 3.8 4 0 0 4 4 4 2 GAF domain PAS_8 PF13188.1 gi|313122543|ref|YP_004038430.1| - 5.7e-12 45.0 0.2 1.2e-06 28.1 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|313122543|ref|YP_004038430.1| - 9.4e-08 32.2 0.1 0.012 15.7 0.0 3.2 3 0 0 3 3 3 2 GAF domain PAS_7 PF12860.2 gi|313122543|ref|YP_004038430.1| - 2.5e-07 30.6 1.4 0.0015 18.4 0.1 3.7 3 1 0 3 3 3 2 PAS fold HTH_20 PF12840.2 gi|313122543|ref|YP_004038430.1| - 0.001 18.8 0.0 0.0041 16.9 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313122543|ref|YP_004038430.1| - 0.0022 17.6 0.0 0.0057 16.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Erf4 PF10256.4 gi|313122543|ref|YP_004038430.1| - 0.081 12.7 0.3 18 5.2 0.0 2.9 3 0 0 3 3 3 0 Golgin subfamily A member 7/ERF4 family PAS_3 PF08447.6 gi|313122543|ref|YP_004038430.1| - 0.1 12.7 0.0 0.31 11.1 0.0 1.9 1 0 0 1 1 1 0 PAS fold Methyltransf_26 PF13659.1 gi|313122545|ref|YP_004038432.1| - 5.6e-14 52.1 0.6 2.9e-13 49.8 0.4 2.3 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|313122545|ref|YP_004038432.1| - 6.3e-07 29.7 0.0 1.2e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|313122545|ref|YP_004038432.1| - 7.5e-07 28.5 0.0 0.0017 17.4 0.0 2.5 2 1 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|313122545|ref|YP_004038432.1| - 1.8e-05 24.4 0.0 6.4e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Glyco_hydro_88 PF07470.8 gi|313122546|ref|YP_004038433.1| - 1.4e-08 34.2 0.4 0.029 13.4 0.0 3.2 2 1 1 3 3 3 3 Glycosyl Hydrolase Family 88 Prenyltrans_1 PF13243.1 gi|313122546|ref|YP_004038433.1| - 4.6e-06 26.5 0.5 0.0087 16.0 0.0 3.1 2 2 1 3 3 3 2 Prenyltransferase-like Glyco_hydro_76 PF03663.9 gi|313122546|ref|YP_004038433.1| - 0.00015 21.2 3.1 0.0055 16.1 0.0 2.9 2 1 1 3 3 3 2 Glycosyl hydrolase family 76 DUF1616 PF07760.6 gi|313122548|ref|YP_004038435.1| - 2.6e-49 167.8 0.5 3.1e-49 167.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2976 PF11190.3 gi|313122548|ref|YP_004038435.1| - 0.0044 16.5 0.2 0.014 14.9 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2976) ABC_tran PF00005.22 gi|313117185|ref|YP_004044168.1| - 1.8e-25 89.8 0.0 2.8e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117185|ref|YP_004044168.1| - 2.2e-14 54.0 0.0 2.3e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|313117185|ref|YP_004044168.1| - 3e-05 23.6 0.2 0.56 9.5 0.0 3.0 3 0 0 3 3 3 2 AAA-like domain AAA_29 PF13555.1 gi|313117185|ref|YP_004044168.1| - 4.3e-05 22.9 0.1 9.2e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117185|ref|YP_004044168.1| - 0.00041 19.6 0.0 0.4 9.8 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313117185|ref|YP_004044168.1| - 0.00052 20.4 0.0 0.00066 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|313117185|ref|YP_004044168.1| - 0.0023 18.3 0.0 0.004 17.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) ArgK PF03308.11 gi|313117185|ref|YP_004044168.1| - 0.0052 15.5 0.0 0.0084 14.9 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|313117185|ref|YP_004044168.1| - 0.03 14.3 0.0 0.053 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313117185|ref|YP_004044168.1| - 0.051 12.7 0.0 0.076 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|313117185|ref|YP_004044168.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SicP-binding PF09119.5 gi|313117185|ref|YP_004044168.1| - 0.15 11.8 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 SicP binding Mg_chelatase PF01078.16 gi|313117185|ref|YP_004044168.1| - 0.15 11.2 0.0 3.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|313117185|ref|YP_004044168.1| - 0.19 10.7 0.0 5.5 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|313117186|ref|YP_004044169.1| - 5.3e-20 71.4 8.7 6.4e-20 71.1 6.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117186|ref|YP_004044169.1| - 1.8e-11 43.6 12.6 2.3e-11 43.2 8.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117186|ref|YP_004044169.1| - 0.00043 19.6 1.4 0.00073 18.8 0.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein Tom5 PF10642.4 gi|313117186|ref|YP_004044169.1| - 0.083 12.5 0.6 0.083 12.5 0.4 1.8 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase DDE_Tnp_IS240 PF13610.1 gi|313117188|ref|YP_004044171.1| - 1.4e-11 44.5 0.0 1.7e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 DDE domain ALMT PF11744.3 gi|313117189|ref|YP_004044172.1| - 0.058 12.0 1.3 0.067 11.8 0.9 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter MgtC PF02308.11 gi|313117189|ref|YP_004044172.1| - 0.093 12.5 10.2 0.021 14.6 5.1 1.4 2 0 0 2 2 2 0 MgtC family Wzy_C PF04932.10 gi|313117189|ref|YP_004044172.1| - 0.38 10.5 4.4 0.62 9.8 3.1 1.4 1 1 0 1 1 1 0 O-Antigen ligase DUF2207 PF09972.4 gi|313117189|ref|YP_004044172.1| - 1.7 7.1 3.6 1.8 7.0 2.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TLE_N PF03920.10 gi|313117191|ref|YP_004044174.1| - 0.16 11.8 0.7 0.25 11.1 0.5 1.3 1 0 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain LPAM_1 PF08139.7 gi|313117192|ref|YP_004044175.1| - 1.1 9.5 3.0 2.1 8.7 2.1 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Apolipoprotein PF01442.13 gi|313117193|ref|YP_004044176.1| - 0.096 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain TAT_signal PF10518.4 gi|313117193|ref|YP_004044176.1| - 0.48 10.5 2.0 0.91 9.6 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Sulfate_transp PF00916.15 gi|313117194|ref|YP_004044177.1| - 0.08 11.9 0.6 0.11 11.5 0.4 1.1 1 0 0 1 1 1 0 Sulfate transporter family Usp PF00582.21 gi|313117195|ref|YP_004044178.1| - 9e-31 106.9 0.1 1e-30 106.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|313117195|ref|YP_004044178.1| - 0.047 12.9 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DNA_photolyase PF00875.13 gi|313117195|ref|YP_004044178.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase ABC2_membrane_2 PF12679.2 gi|313117197|ref|YP_004044180.1| - 0.057 12.2 0.1 0.058 12.2 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313117198|ref|YP_004044181.1| - 7.2e-08 31.6 10.6 7.5e-08 31.5 7.0 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117198|ref|YP_004044181.1| - 4.5e-05 22.7 12.9 8e-05 21.9 8.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117198|ref|YP_004044181.1| - 0.04 12.9 11.6 0.062 12.3 8.0 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Glycos_transf_1 PF00534.15 gi|313117199|ref|YP_004044182.1| - 1.3e-18 67.0 0.0 8.9e-18 64.2 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313117199|ref|YP_004044182.1| - 5.8e-14 52.3 0.0 4.2e-13 49.5 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|313117199|ref|YP_004044182.1| - 2.7e-09 37.1 0.0 5.3e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117199|ref|YP_004044182.1| - 3.3e-08 33.8 0.0 6.9e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|313117199|ref|YP_004044182.1| - 3.7e-06 26.7 0.0 6.2e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUF3325 PF11804.3 gi|313117202|ref|YP_004044185.1| - 0.042 13.7 6.2 0.14 12.1 4.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) AzlD PF05437.7 gi|313117202|ref|YP_004044185.1| - 0.18 11.7 3.2 0.63 10.0 0.2 2.2 2 0 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) DUF1469 PF07332.6 gi|313117202|ref|YP_004044185.1| - 0.5 10.0 3.1 1 9.0 2.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1206 PF06724.6 gi|313117202|ref|YP_004044185.1| - 7.2 6.4 7.0 1.2 8.8 0.7 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) ABC_tran PF00005.22 gi|313117203|ref|YP_004044186.1| - 4.9e-28 98.1 0.0 8.1e-28 97.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117203|ref|YP_004044186.1| - 7.7e-13 49.0 0.0 1.5e-07 31.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|313117203|ref|YP_004044186.1| - 1.2e-05 25.7 0.0 2.5e-05 24.7 0.0 1.6 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313117203|ref|YP_004044186.1| - 5e-05 22.7 0.0 9.1e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117203|ref|YP_004044186.1| - 9.1e-05 21.7 0.0 0.0038 16.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|313117203|ref|YP_004044186.1| - 0.00094 19.0 0.0 0.0041 16.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313117203|ref|YP_004044186.1| - 0.0035 16.4 0.0 1.2 8.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|313117203|ref|YP_004044186.1| - 0.02 14.0 0.1 0.045 12.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|313117203|ref|YP_004044186.1| - 0.033 14.1 0.0 0.06 13.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_PrkA PF08298.6 gi|313117203|ref|YP_004044186.1| - 0.043 12.4 0.0 0.081 11.5 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain AAA_16 PF13191.1 gi|313117203|ref|YP_004044186.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|313117203|ref|YP_004044186.1| - 0.15 11.4 0.4 0.58 9.5 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|313117204|ref|YP_004044187.1| - 3.1e-08 32.8 3.7 3.1e-08 32.8 2.6 3.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117204|ref|YP_004044187.1| - 3.3e-05 23.1 11.9 3.3e-05 23.1 8.2 2.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117204|ref|YP_004044187.1| - 4.8e-05 22.7 5.0 4.8e-05 22.7 3.5 3.1 3 1 0 3 3 3 1 ABC-2 family transporter protein OspE PF02471.12 gi|313117205|ref|YP_004044188.1| - 0.1 12.4 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Borrelia outer surface protein E Bac_luciferase PF00296.15 gi|313117206|ref|YP_004044189.1| - 5.5e-36 124.2 0.1 1.7e-35 122.6 0.1 1.8 1 1 0 1 1 1 1 Luciferase-like monooxygenase Hexapep PF00132.19 gi|313117207|ref|YP_004044190.1| - 5.8e-18 63.5 9.4 1.2e-07 30.8 0.6 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313117207|ref|YP_004044190.1| - 5.9e-07 28.9 9.2 1.8e-05 24.1 0.7 3.9 1 1 3 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|313117207|ref|YP_004044190.1| - 0.16 10.5 0.6 4.1 5.8 0.2 2.0 1 1 1 2 2 2 0 L-fucokinase Phasin_2 PF09361.5 gi|313117209|ref|YP_004044192.1| - 0.0008 19.3 1.7 1.4 8.9 0.0 2.8 1 1 0 2 2 2 2 Phasin protein PMC2NT PF08066.7 gi|313117209|ref|YP_004044192.1| - 0.079 13.2 4.6 0.56 10.5 3.1 2.2 1 1 0 1 1 1 0 PMC2NT (NUC016) domain Phasin PF05597.6 gi|313117209|ref|YP_004044192.1| - 0.1 12.3 0.7 1.2 8.8 0.0 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) GTPase_Cys_C PF12631.2 gi|313117209|ref|YP_004044192.1| - 0.17 12.3 1.4 0.3 11.5 0.1 2.2 2 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF1993 PF09351.5 gi|313117209|ref|YP_004044192.1| - 0.2 11.5 1.8 0.25 11.2 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) DASH_Dam1 PF08653.5 gi|313117209|ref|YP_004044192.1| - 0.22 11.3 2.0 6.6 6.5 0.0 2.9 2 1 0 2 2 2 0 DASH complex subunit Dam1 PHA_synth_III_E PF09712.5 gi|313117210|ref|YP_004044193.1| - 4.2e-10 39.5 0.2 2.4e-09 37.0 0.1 1.9 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|313117210|ref|YP_004044193.1| - 0.012 15.3 0.3 0.035 13.8 0.0 1.9 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Nsp1_C PF05064.8 gi|313117210|ref|YP_004044193.1| - 0.046 13.3 0.5 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region FliD_C PF07195.7 gi|313117210|ref|YP_004044193.1| - 0.05 12.8 0.0 0.22 10.8 0.0 1.9 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF3150 PF11348.3 gi|313117210|ref|YP_004044193.1| - 0.11 11.5 0.2 0.15 11.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) Sipho_Gp157 PF05565.6 gi|313117210|ref|YP_004044193.1| - 0.12 11.9 0.6 11 5.5 0.1 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 DUF4083 PF13314.1 gi|313117210|ref|YP_004044193.1| - 0.22 11.3 0.6 0.36 10.6 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Abhydrolase_1 PF00561.15 gi|313117211|ref|YP_004044194.1| - 2.6e-19 69.6 0.0 4.3e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|313117211|ref|YP_004044194.1| - 2.7e-13 49.6 0.0 4.8e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_6 PF12697.2 gi|313117211|ref|YP_004044194.1| - 5.6e-11 42.7 0.0 1.9e-10 41.0 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|313117211|ref|YP_004044194.1| - 6.8e-10 37.9 0.0 3.6e-09 35.5 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) Abhydrolase_5 PF12695.2 gi|313117211|ref|YP_004044194.1| - 1.6e-08 34.4 0.0 3.5e-07 30.0 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family HHH_5 PF14520.1 gi|313117211|ref|YP_004044194.1| - 3.5e-07 30.2 0.1 9e-07 28.9 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DLH PF01738.13 gi|313117211|ref|YP_004044194.1| - 3.4e-06 26.5 0.0 0.003 16.8 0.0 2.5 2 0 0 2 2 2 2 Dienelactone hydrolase family DNA_pol_lambd_f PF10391.4 gi|313117211|ref|YP_004044194.1| - 2.7e-05 23.5 0.0 7.6e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda FSH1 PF03959.8 gi|313117211|ref|YP_004044194.1| - 3.4e-05 23.4 0.0 0.0083 15.5 0.0 2.3 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DUF4332 PF14229.1 gi|313117211|ref|YP_004044194.1| - 0.00041 20.3 0.2 0.0054 16.6 0.1 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|313117211|ref|YP_004044194.1| - 0.0015 17.8 0.0 0.0044 16.2 0.0 1.8 2 0 0 2 2 2 1 PHB de-polymerase C-terminus Cdd1 PF11731.3 gi|313117211|ref|YP_004044194.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus HTH_Tnp_1 PF01527.15 gi|313117211|ref|YP_004044194.1| - 0.032 14.1 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 Transposase DUF2048 PF09752.4 gi|313117211|ref|YP_004044194.1| - 0.051 12.4 0.3 0.19 10.5 0.0 2.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2048) PGAP1 PF07819.8 gi|313117211|ref|YP_004044194.1| - 0.053 13.0 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein TfoX_C PF04994.8 gi|313117211|ref|YP_004044194.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain CcmH PF03918.9 gi|313117212|ref|YP_004044195.1| - 0.094 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein MaoC_dehydratas PF01575.14 gi|313117213|ref|YP_004044196.1| - 5.4e-21 74.2 0.0 7.6e-21 73.7 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313117213|ref|YP_004044196.1| - 3.2e-07 30.1 0.0 1.5e-06 27.9 0.0 2.1 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase C1_1 PF00130.17 gi|313117214|ref|YP_004044197.1| - 7.7e-05 22.3 9.5 7.7e-05 22.3 6.6 2.0 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|313117214|ref|YP_004044197.1| - 0.00069 19.3 14.6 0.0022 17.6 10.1 1.7 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_2 PF13639.1 gi|313117214|ref|YP_004044197.1| - 0.3 10.9 14.2 0.58 10.0 9.8 1.5 1 1 0 1 1 1 0 Ring finger domain Desulfoferrod_N PF06397.7 gi|313117214|ref|YP_004044197.1| - 0.34 10.3 13.2 0.67 9.3 0.1 3.2 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain YhfH PF14149.1 gi|313117214|ref|YP_004044197.1| - 0.56 10.0 0.3 0.56 10.0 0.2 3.0 1 1 2 3 3 3 0 YhfH-like protein zinc_ribbon_2 PF13240.1 gi|313117214|ref|YP_004044197.1| - 1.7 8.2 7.9 1.2 8.7 2.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Prok-RING_2 PF14445.1 gi|313117214|ref|YP_004044197.1| - 1.8 8.5 10.1 3.1 7.8 7.0 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 DZR PF12773.2 gi|313117214|ref|YP_004044197.1| - 2.2 8.1 12.6 9.5 6.1 8.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|313117214|ref|YP_004044197.1| - 2.3 8.0 7.9 5.1 6.9 2.8 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e DUF4206 PF13901.1 gi|313117214|ref|YP_004044197.1| - 2.6 7.5 10.1 3.3 7.2 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) PHD PF00628.24 gi|313117214|ref|YP_004044197.1| - 2.7 7.7 15.2 7.9 6.2 10.5 1.7 1 1 0 1 1 1 0 PHD-finger zf-HIT PF04438.11 gi|313117214|ref|YP_004044197.1| - 3.4 7.3 13.2 12 5.6 0.2 2.9 1 1 1 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|313117214|ref|YP_004044197.1| - 7.4 6.1 13.6 3.7 7.1 0.1 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF35 PF01796.12 gi|313117215|ref|YP_004044198.1| - 6.9e-08 32.6 0.7 1.3e-07 31.7 0.5 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|313117216|ref|YP_004044199.1| - 2.1e-07 30.3 0.1 5.6e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|313117216|ref|YP_004044199.1| - 4e-05 22.7 0.0 6.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|313117216|ref|YP_004044199.1| - 0.0052 16.6 0.1 24 4.7 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain adh_short PF00106.20 gi|313117217|ref|YP_004044200.1| - 3.1e-42 144.3 0.2 4e-42 143.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313117217|ref|YP_004044200.1| - 2.3e-25 89.7 0.3 2.9e-25 89.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313117217|ref|YP_004044200.1| - 1.5e-21 76.8 0.1 2e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313117217|ref|YP_004044200.1| - 7.7e-05 22.2 0.8 0.00013 21.4 0.5 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|313117217|ref|YP_004044200.1| - 0.0034 16.3 0.2 0.0041 16.0 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313117217|ref|YP_004044200.1| - 0.0052 16.7 0.5 0.0077 16.2 0.4 1.4 1 1 0 1 1 1 1 NADH(P)-binding Pox_TAA1 PF03295.9 gi|313117217|ref|YP_004044200.1| - 0.16 11.6 0.1 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Poxvirus trans-activator protein A1 C-terminal Carboxyl_trans PF01039.17 gi|313117218|ref|YP_004044201.1| - 1.6e-198 660.0 0.1 1.8e-198 659.8 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|313117218|ref|YP_004044201.1| - 0.00046 19.4 0.2 0.0014 17.8 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) ACC_epsilon PF13822.1 gi|313117219|ref|YP_004044202.1| - 4.9e-05 23.6 8.0 4.9e-05 23.6 5.5 3.3 2 2 2 4 4 4 1 Acyl-CoA carboxylase epsilon subunit OAD_gamma PF04277.8 gi|313117219|ref|YP_004044202.1| - 0.035 14.4 13.3 0.024 14.9 7.2 2.3 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain ABC_tran PF00005.22 gi|313117220|ref|YP_004044203.1| - 4.3e-35 120.9 0.0 6.6e-35 120.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117220|ref|YP_004044203.1| - 9.4e-20 70.7 0.1 2.2e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117220|ref|YP_004044203.1| - 7.6e-10 39.2 0.0 1.5e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313117220|ref|YP_004044203.1| - 3.4e-05 23.1 0.0 7.2e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313117220|ref|YP_004044203.1| - 4e-05 23.7 0.1 0.00084 19.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313117220|ref|YP_004044203.1| - 0.00077 18.9 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313117220|ref|YP_004044203.1| - 0.018 15.0 0.0 0.06 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|313117220|ref|YP_004044203.1| - 0.02 14.0 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|313117220|ref|YP_004044203.1| - 0.027 14.7 0.0 0.066 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313117220|ref|YP_004044203.1| - 0.055 12.3 0.1 0.13 11.0 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AIG1 PF04548.11 gi|313117220|ref|YP_004044203.1| - 0.1 11.7 0.0 1.6 7.7 0.0 2.1 2 0 0 2 2 2 0 AIG1 family Zeta_toxin PF06414.7 gi|313117220|ref|YP_004044203.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|313117220|ref|YP_004044203.1| - 0.14 11.5 0.1 0.43 10.0 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|313117221|ref|YP_004044204.1| - 6.9e-28 97.6 0.0 1.1e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117221|ref|YP_004044204.1| - 2e-17 63.3 0.4 5.2e-17 61.9 0.3 1.8 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117221|ref|YP_004044204.1| - 2.2e-10 40.9 0.2 4.1e-09 36.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313117221|ref|YP_004044204.1| - 9.8e-05 21.6 0.1 0.00025 20.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313117221|ref|YP_004044204.1| - 0.0026 17.2 0.0 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|313117221|ref|YP_004044204.1| - 0.005 15.9 0.0 0.044 12.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain PRK PF00485.13 gi|313117221|ref|YP_004044204.1| - 0.0059 16.1 0.0 0.009 15.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|313117221|ref|YP_004044204.1| - 0.01 15.9 0.8 0.062 13.4 0.6 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|313117221|ref|YP_004044204.1| - 0.025 14.0 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|313117221|ref|YP_004044204.1| - 0.032 14.2 0.2 0.061 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313117221|ref|YP_004044204.1| - 0.046 12.8 0.1 1.2 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313117221|ref|YP_004044204.1| - 0.055 12.8 0.2 2.7 7.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|313117221|ref|YP_004044204.1| - 0.063 12.7 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|313117221|ref|YP_004044204.1| - 0.068 12.8 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|313117221|ref|YP_004044204.1| - 0.083 13.7 0.1 0.14 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|313117221|ref|YP_004044204.1| - 0.11 11.0 1.4 0.32 9.5 1.0 1.7 1 1 0 1 1 1 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|313117222|ref|YP_004044205.1| - 1.9e-19 69.8 11.8 1.9e-19 69.8 8.1 2.6 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313117222|ref|YP_004044205.1| - 4.2e-12 45.2 0.8 4.2e-12 45.2 0.6 2.7 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF204 PF02659.10 gi|313117222|ref|YP_004044205.1| - 0.067 13.3 0.1 0.067 13.3 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function DUF BPD_transp_1 PF00528.17 gi|313117223|ref|YP_004044206.1| - 3.1e-33 114.8 12.7 3.1e-33 114.8 8.8 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component MscS_TM PF12794.2 gi|313117223|ref|YP_004044206.1| - 0.0067 15.0 0.7 0.0067 15.0 0.5 2.5 2 1 0 2 2 2 1 Mechanosensitive ion channel inner membrane domain 1 DUF1471 PF07338.8 gi|313117223|ref|YP_004044206.1| - 0.11 12.1 0.1 0.31 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) SBP_bac_5 PF00496.17 gi|313117224|ref|YP_004044207.1| - 9.3e-50 169.4 7.7 1.2e-49 169.0 5.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313117224|ref|YP_004044207.1| - 0.004 17.0 1.5 0.0098 15.8 1.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|313117225|ref|YP_004044208.1| - 8.6e-37 126.4 0.0 1.2e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117225|ref|YP_004044208.1| - 7.3e-16 58.2 0.5 1.8e-15 57.0 0.3 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117225|ref|YP_004044208.1| - 7.7e-11 42.4 0.1 3.1e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313117225|ref|YP_004044208.1| - 2.8e-05 24.2 0.1 0.0002 21.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117225|ref|YP_004044208.1| - 0.0011 18.9 0.3 0.0021 18.0 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|313117225|ref|YP_004044208.1| - 0.0012 18.0 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|313117225|ref|YP_004044208.1| - 0.0061 16.0 0.0 0.0072 15.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|313117225|ref|YP_004044208.1| - 0.012 15.1 0.2 0.023 14.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|313117225|ref|YP_004044208.1| - 0.021 14.2 0.0 0.037 13.4 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|313117225|ref|YP_004044208.1| - 0.029 14.6 0.5 0.09 13.0 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313117225|ref|YP_004044208.1| - 0.034 14.0 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313117225|ref|YP_004044208.1| - 0.041 13.8 0.0 0.24 11.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313117225|ref|YP_004044208.1| - 0.05 13.0 0.3 0.29 10.4 0.2 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313117225|ref|YP_004044208.1| - 0.1 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|313117225|ref|YP_004044208.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|313117225|ref|YP_004044208.1| - 0.11 13.2 0.1 0.34 11.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313117225|ref|YP_004044208.1| - 0.26 10.9 1.2 0.68 9.5 0.3 1.9 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|313117226|ref|YP_004044209.1| - 1.7e-26 93.1 0.0 2.3e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117226|ref|YP_004044209.1| - 5.8e-18 65.0 0.2 1.1e-17 64.0 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117226|ref|YP_004044209.1| - 3e-08 33.9 0.2 1.5e-07 31.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313117226|ref|YP_004044209.1| - 0.012 15.0 0.2 1.6 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|313117226|ref|YP_004044209.1| - 0.09 12.9 2.0 1.6 8.8 1.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313117226|ref|YP_004044209.1| - 0.19 11.1 0.9 8.1 5.7 0.2 2.2 1 1 0 2 2 2 0 AAA-like domain BPD_transp_1 PF00528.17 gi|313117227|ref|YP_004044210.1| - 6.8e-29 100.6 13.4 1.1e-28 99.9 6.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313117227|ref|YP_004044210.1| - 1.6e-16 59.3 0.2 1.6e-16 59.3 0.1 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|313117228|ref|YP_004044211.1| - 8e-45 152.6 14.5 8e-45 152.6 10.1 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|313117229|ref|YP_004044212.1| - 8.5e-70 235.4 1.6 1.1e-69 235.0 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle IclR PF01614.13 gi|313117230|ref|YP_004044213.1| - 1.3e-26 92.8 0.5 1.4e-25 89.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117230|ref|YP_004044213.1| - 2.2e-07 30.3 0.1 5.1e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117230|ref|YP_004044213.1| - 0.00026 20.5 0.1 0.00069 19.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117230|ref|YP_004044213.1| - 0.0022 17.6 0.0 0.0056 16.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313117230|ref|YP_004044213.1| - 0.0025 17.5 0.1 0.0055 16.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313117230|ref|YP_004044213.1| - 0.0026 17.0 0.0 0.0062 15.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313117230|ref|YP_004044213.1| - 0.0073 15.9 0.0 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|313117230|ref|YP_004044213.1| - 0.01 15.6 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_9 PF08221.6 gi|313117230|ref|YP_004044213.1| - 0.013 15.3 0.1 0.029 14.2 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_DeoR PF08220.7 gi|313117230|ref|YP_004044213.1| - 0.017 14.6 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|313117230|ref|YP_004044213.1| - 0.018 14.7 0.1 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|313117230|ref|YP_004044213.1| - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|313117230|ref|YP_004044213.1| - 0.091 12.3 0.1 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_11 PF08279.7 gi|313117230|ref|YP_004044213.1| - 0.11 12.1 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain SpoIIID PF12116.3 gi|313117230|ref|YP_004044213.1| - 0.13 12.1 0.1 0.37 10.7 0.0 1.8 2 0 0 2 2 1 0 Stage III sporulation protein D Sulfolobus_pRN PF05584.6 gi|313117230|ref|YP_004044213.1| - 0.13 12.2 0.2 0.37 10.7 0.1 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein AMP-binding PF00501.23 gi|313117231|ref|YP_004044214.1| - 2.5e-71 240.2 0.1 3.1e-71 239.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313117231|ref|YP_004044214.1| - 1.3e-12 48.5 0.0 3e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3701 PF12482.3 gi|313117231|ref|YP_004044214.1| - 0.059 13.1 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Phage integrase protein Acyl-CoA_dh_1 PF00441.19 gi|313117232|ref|YP_004044215.1| - 1.7e-33 115.8 3.1 4.2e-33 114.5 1.1 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313117232|ref|YP_004044215.1| - 3.8e-13 48.7 0.0 7.3e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|313117232|ref|YP_004044215.1| - 4.1e-09 36.7 7.5 2.3e-08 34.3 0.5 2.3 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain IclR PF01614.13 gi|313117233|ref|YP_004044216.1| - 2.2e-35 121.1 0.3 5.9e-35 119.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117233|ref|YP_004044216.1| - 3.9e-10 39.1 0.2 2.7e-09 36.4 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313117233|ref|YP_004044216.1| - 2.1e-07 30.5 0.1 7.2e-07 28.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|313117233|ref|YP_004044216.1| - 3.8e-07 29.6 0.1 1.1e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313117233|ref|YP_004044216.1| - 4.4e-06 26.4 0.1 9.2e-06 25.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313117233|ref|YP_004044216.1| - 5.9e-06 25.8 0.0 1.3e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|313117233|ref|YP_004044216.1| - 3.3e-05 24.1 0.6 0.0032 17.7 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313117233|ref|YP_004044216.1| - 7.8e-05 22.6 0.2 0.0016 18.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|313117233|ref|YP_004044216.1| - 9.7e-05 21.6 0.1 0.00046 19.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|313117233|ref|YP_004044216.1| - 0.00017 21.0 0.1 0.00037 20.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|313117233|ref|YP_004044216.1| - 0.0018 17.7 0.1 0.0046 16.4 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|313117233|ref|YP_004044216.1| - 0.0034 16.9 0.5 0.075 12.6 0.1 2.7 3 0 0 3 3 3 1 HTH domain TrmB PF01978.14 gi|313117233|ref|YP_004044216.1| - 0.0093 15.6 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|313117233|ref|YP_004044216.1| - 0.012 15.5 0.1 0.028 14.3 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313117233|ref|YP_004044216.1| - 0.053 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|313117233|ref|YP_004044216.1| - 0.11 12.1 0.1 0.35 10.5 0.1 1.7 2 0 0 2 2 2 0 ECF sigma factor HATPase_c PF02518.21 gi|313117234|ref|YP_004044217.1| - 1.4e-29 102.0 0.0 2.8e-29 101.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313117234|ref|YP_004044217.1| - 2e-12 46.9 0.0 9.9e-12 44.7 0.0 2.2 2 0 0 2 2 2 1 PAS fold HAMP PF00672.20 gi|313117234|ref|YP_004044217.1| - 9.2e-11 41.7 1.2 1.6e-10 40.9 0.1 2.0 2 0 0 2 2 2 1 HAMP domain PAS PF00989.19 gi|313117234|ref|YP_004044217.1| - 2.6e-10 40.0 0.0 1e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|313117234|ref|YP_004044217.1| - 3.3e-10 39.7 1.5 6.8e-10 38.7 0.0 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|313117234|ref|YP_004044217.1| - 3e-07 30.7 0.0 1.2e-06 28.8 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|313117234|ref|YP_004044217.1| - 2.3e-06 27.6 0.4 1.1e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|313117234|ref|YP_004044217.1| - 2.5e-06 27.1 0.0 8.8e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.1 gi|313117234|ref|YP_004044217.1| - 0.00029 20.4 0.0 0.0006 19.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|313117234|ref|YP_004044217.1| - 0.00097 18.9 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ADSL_C PF10397.4 gi|313117234|ref|YP_004044217.1| - 0.012 15.5 0.1 0.033 14.1 0.1 1.7 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus FxsA PF04186.8 gi|313117234|ref|YP_004044217.1| - 0.02 14.5 0.3 0.04 13.5 0.2 1.5 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein CorA PF01544.13 gi|313117234|ref|YP_004044217.1| - 0.028 13.4 0.4 0.07 12.1 0.3 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SBP_bac_1 PF01547.20 gi|313117235|ref|YP_004044218.1| - 6.8e-21 75.3 2.2 2.9e-20 73.2 1.5 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|313117235|ref|YP_004044218.1| - 6.3e-19 68.7 0.2 9.3e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ApbA_C PF08546.6 gi|313117235|ref|YP_004044218.1| - 0.028 14.4 0.0 7.2 6.6 0.0 2.5 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal SpoVIF PF14069.1 gi|313117235|ref|YP_004044218.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Stage VI sporulation protein F Peripla_BP_6 PF13458.1 gi|313117236|ref|YP_004044219.1| - 6.8e-37 127.5 8.4 9.3e-37 127.1 5.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|313117236|ref|YP_004044219.1| - 1.8e-24 86.1 0.1 3.8e-24 85.1 0.1 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|313117236|ref|YP_004044219.1| - 9e-09 34.5 0.0 6e-08 31.8 0.0 2.1 3 0 0 3 3 3 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|313117236|ref|YP_004044219.1| - 0.002 18.0 3.1 0.002 18.0 2.1 2.8 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.16 gi|313117237|ref|YP_004044220.1| - 5.3e-51 173.1 69.3 8.8e-51 172.4 25.3 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313117237|ref|YP_004044220.1| - 3.4e-09 36.7 0.1 3.4e-09 36.7 0.1 6.7 8 1 1 9 9 9 2 HAMP domain Laminin_II PF06009.7 gi|313117237|ref|YP_004044220.1| - 0.01 15.5 6.6 0.01 15.5 4.6 4.6 2 2 2 4 4 4 0 Laminin Domain II KxDL PF10241.4 gi|313117237|ref|YP_004044220.1| - 0.047 13.5 8.1 0.99 9.3 0.1 3.4 2 2 2 4 4 4 0 Uncharacterized conserved protein BLOC1_2 PF10046.4 gi|313117237|ref|YP_004044220.1| - 1 9.5 33.1 1.5 9.0 1.8 6.1 3 2 1 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2450 PF10475.4 gi|313117237|ref|YP_004044220.1| - 2.1 7.1 16.6 0.031 13.1 1.2 3.0 2 2 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) NPV_P10 PF05531.7 gi|313117237|ref|YP_004044220.1| - 3.3 8.0 23.8 0.1 12.8 1.1 5.3 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein DUF1628 PF07790.6 gi|313117238|ref|YP_004044221.1| - 1.9e-08 34.9 0.6 3.5e-08 34.0 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) 7TMR-DISM_7TM PF07695.6 gi|313117239|ref|YP_004044222.1| - 0.054 13.1 7.4 0.066 12.8 5.1 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling RseC_MucC PF04246.7 gi|313117239|ref|YP_004044222.1| - 5.2 6.6 6.8 11 5.5 0.1 2.3 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF4330 PF14221.1 gi|313117240|ref|YP_004044223.1| - 0.036 13.9 0.1 0.064 13.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) ABC2_membrane_2 PF12679.2 gi|313117242|ref|YP_004044225.1| - 1.8e-28 99.2 16.5 5.7e-27 94.2 11.5 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117242|ref|YP_004044225.1| - 1.8e-13 50.2 22.4 1.8e-13 50.2 15.5 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117242|ref|YP_004044225.1| - 8.1e-07 28.3 21.0 1e-06 28.0 14.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117242|ref|YP_004044225.1| - 0.0003 20.1 9.3 0.00057 19.2 6.5 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313117243|ref|YP_004044226.1| - 6.2e-30 104.2 0.0 8.8e-30 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117243|ref|YP_004044226.1| - 4.9e-15 56.2 0.1 3.6e-11 43.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|313117243|ref|YP_004044226.1| - 0.0062 16.4 0.0 0.029 14.2 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|313117243|ref|YP_004044226.1| - 0.0082 15.6 0.1 0.034 13.5 0.1 1.9 1 1 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|313117243|ref|YP_004044226.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117243|ref|YP_004044226.1| - 0.037 13.2 0.0 7.1 5.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313117243|ref|YP_004044226.1| - 0.037 14.3 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313117243|ref|YP_004044226.1| - 0.066 12.7 0.0 0.1 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313117243|ref|YP_004044226.1| - 0.069 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|313117243|ref|YP_004044226.1| - 0.093 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|313117243|ref|YP_004044226.1| - 0.14 12.0 0.0 0.29 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain CARDB PF07705.6 gi|313117244|ref|YP_004044227.1| - 0.059 13.4 0.1 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 CARDB Lipase_bact_N PF12262.3 gi|313117244|ref|YP_004044227.1| - 0.072 12.2 0.0 0.096 11.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial virulence factor lipase N-terminal DUF1573 PF07610.6 gi|313117244|ref|YP_004044227.1| - 0.12 11.9 0.0 0.74 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) DUF11 PF01345.13 gi|313117244|ref|YP_004044227.1| - 0.14 12.2 0.4 0.34 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF11 EamA PF00892.15 gi|313117245|ref|YP_004044228.1| - 1.4e-32 112.3 27.1 6.1e-18 65.0 5.3 2.7 2 1 1 3 3 3 2 EamA-like transporter family TPT PF03151.11 gi|313117245|ref|YP_004044228.1| - 0.00035 20.2 17.7 0.00049 19.7 3.9 3.1 3 0 0 3 3 3 2 Triose-phosphate Transporter family DUF914 PF06027.7 gi|313117245|ref|YP_004044228.1| - 0.00039 19.3 4.2 0.00073 18.4 2.9 1.4 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) EmrE PF13536.1 gi|313117245|ref|YP_004044228.1| - 0.015 15.4 30.0 0.19 11.9 6.0 3.5 1 1 2 3 3 3 0 Multidrug resistance efflux transporter UAA PF08449.6 gi|313117245|ref|YP_004044228.1| - 7.1 5.4 16.3 0.036 12.9 1.3 3.0 1 1 0 3 3 3 0 UAA transporter family AsnC_trans_reg PF01037.16 gi|313117246|ref|YP_004044229.1| - 3.1e-09 36.4 0.8 5.2e-09 35.6 0.2 1.7 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|313117246|ref|YP_004044229.1| - 1.2e-08 34.2 0.0 2e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313117246|ref|YP_004044229.1| - 0.00022 20.6 0.0 0.00046 19.6 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|313117246|ref|YP_004044229.1| - 0.00027 20.4 0.0 0.0014 18.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117246|ref|YP_004044229.1| - 0.00062 19.3 0.0 0.00098 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313117246|ref|YP_004044229.1| - 0.00075 19.7 0.1 0.0018 18.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|313117246|ref|YP_004044229.1| - 0.0029 17.3 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GYD PF08734.6 gi|313117246|ref|YP_004044229.1| - 0.0066 16.1 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 GYD domain Replic_Relax PF13814.1 gi|313117246|ref|YP_004044229.1| - 0.018 14.9 0.0 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Replication-relaxation TrmB PF01978.14 gi|313117246|ref|YP_004044229.1| - 0.024 14.3 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|313117246|ref|YP_004044229.1| - 0.03 14.2 0.1 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) GvpK PF05121.7 gi|313117246|ref|YP_004044229.1| - 0.11 12.3 0.9 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Gas vesicle protein K HTH_10 PF04967.7 gi|313117247|ref|YP_004044230.1| - 5.1e-18 64.3 0.0 9.3e-18 63.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313117247|ref|YP_004044230.1| - 7.7e-08 31.6 0.2 1.7e-06 27.4 0.0 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|313117247|ref|YP_004044230.1| - 4.3e-06 25.9 0.1 3.3e-05 23.0 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|313117247|ref|YP_004044230.1| - 7.5e-06 25.4 0.0 1.9e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313117247|ref|YP_004044230.1| - 0.00054 19.2 0.0 0.0011 18.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|313117247|ref|YP_004044230.1| - 0.0007 19.1 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.2 gi|313117247|ref|YP_004044230.1| - 0.0022 17.6 0.1 0.011 15.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313117247|ref|YP_004044230.1| - 0.011 15.5 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|313117247|ref|YP_004044230.1| - 0.012 14.9 0.0 0.028 13.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|313117247|ref|YP_004044230.1| - 0.022 14.3 0.0 0.054 13.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.1 gi|313117247|ref|YP_004044230.1| - 0.089 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Amidohydro_1 PF01979.15 gi|313117248|ref|YP_004044231.1| - 4.6e-33 115.2 0.0 6.4e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313117248|ref|YP_004044231.1| - 4.7e-20 72.7 0.8 3.3e-18 66.6 0.1 2.8 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|313117248|ref|YP_004044231.1| - 4.7e-14 51.9 2.8 8e-14 51.2 0.1 2.6 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313117248|ref|YP_004044231.1| - 4.6e-13 49.1 0.2 1.5e-10 40.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|313117248|ref|YP_004044231.1| - 0.12 11.6 0.9 11 5.4 0.2 2.5 2 0 0 2 2 2 0 D-aminoacylase, C-terminal region Cupin_2 PF07883.6 gi|313117249|ref|YP_004044232.1| - 7.1e-11 41.4 1.8 1.4e-10 40.5 1.2 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|313117249|ref|YP_004044232.1| - 0.0016 18.1 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|313117249|ref|YP_004044232.1| - 0.0035 16.7 0.0 0.0058 16.0 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|313117249|ref|YP_004044232.1| - 0.0098 15.2 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|313117249|ref|YP_004044232.1| - 0.049 13.2 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Cupin Strep_67kDa_ant PF06100.6 gi|313117250|ref|YP_004044233.1| - 1.2e-180 601.2 0.0 1.3e-180 601.0 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|313117250|ref|YP_004044233.1| - 2.9e-05 23.9 0.1 6.6e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313117250|ref|YP_004044233.1| - 0.0017 17.2 0.0 0.0063 15.4 0.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase PadR PF03551.9 gi|313117251|ref|YP_004044234.1| - 4.2e-15 55.2 1.0 5.3e-15 54.9 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|313117251|ref|YP_004044234.1| - 0.00034 20.3 0.4 0.00053 19.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|313117251|ref|YP_004044234.1| - 0.011 16.0 0.1 0.013 15.8 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|313117251|ref|YP_004044234.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|313117251|ref|YP_004044234.1| - 0.032 13.8 0.1 0.29 10.8 0.1 2.0 1 1 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|313117251|ref|YP_004044234.1| - 0.037 14.0 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|313117251|ref|YP_004044234.1| - 0.079 12.8 0.0 0.19 11.6 0.0 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC MFS_1 PF07690.11 gi|313117252|ref|YP_004044235.1| - 3.4e-13 49.0 34.0 3.4e-13 49.0 23.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily UPF0227 PF05728.7 gi|313117252|ref|YP_004044235.1| - 0.18 11.4 0.1 0.3 10.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) UvrD-helicase PF00580.16 gi|313117253|ref|YP_004044236.1| - 2.2e-49 168.4 0.1 7.1e-49 166.7 0.1 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|313117253|ref|YP_004044236.1| - 2.4e-34 119.3 0.0 2.2e-18 66.8 0.0 2.3 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|313117253|ref|YP_004044236.1| - 3.1e-13 49.2 0.0 1.8e-12 46.7 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|313117253|ref|YP_004044236.1| - 9e-09 35.0 0.2 9e-09 35.0 0.2 2.5 3 2 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|313117253|ref|YP_004044236.1| - 1.5e-08 34.7 0.1 0.001 19.1 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|313117253|ref|YP_004044236.1| - 9.2e-05 22.0 0.0 0.00023 20.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2800 PF10926.3 gi|313117253|ref|YP_004044236.1| - 0.0006 19.0 0.0 0.0014 17.7 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_11 PF13086.1 gi|313117253|ref|YP_004044236.1| - 0.0035 16.9 0.1 1 8.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|313117253|ref|YP_004044236.1| - 0.0051 16.2 0.0 0.12 11.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|313117253|ref|YP_004044236.1| - 0.025 14.0 2.8 24 4.3 0.1 4.1 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|313117253|ref|YP_004044236.1| - 0.058 12.6 0.3 13 4.9 0.0 2.8 3 0 0 3 3 3 0 PhoH-like protein TetR_N PF00440.18 gi|313117253|ref|YP_004044236.1| - 0.1 12.2 0.0 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family PDDEXK_1 PF12705.2 gi|313117254|ref|YP_004044237.1| - 6.4e-18 65.0 0.5 1.7e-17 63.6 0.4 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily MaoC_dehydrat_N PF13452.1 gi|313117255|ref|YP_004044238.1| - 2e-09 37.3 0.2 1.8e-08 34.2 0.2 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|313117255|ref|YP_004044238.1| - 1.7e-05 24.2 0.1 5e-05 22.6 0.1 1.7 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.17 gi|313117255|ref|YP_004044238.1| - 0.052 13.6 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily AfsA PF03756.8 gi|313117255|ref|YP_004044238.1| - 0.057 13.1 0.1 0.09 12.5 0.0 1.4 1 1 0 1 1 1 0 A-factor biosynthesis hotdog domain Penicillinase_R PF03965.11 gi|313117256|ref|YP_004044239.1| - 8e-12 45.2 0.0 8.8e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor FUR PF01475.14 gi|313117256|ref|YP_004044239.1| - 2.7e-05 24.0 0.1 3.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Arg_repressor PF01316.16 gi|313117256|ref|YP_004044239.1| - 0.00063 19.2 0.3 0.00095 18.6 0.2 1.2 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain DUF480 PF04337.7 gi|313117256|ref|YP_004044239.1| - 0.0036 17.1 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF480 MarR_2 PF12802.2 gi|313117256|ref|YP_004044239.1| - 0.006 16.2 3.5 0.028 14.1 1.3 2.5 2 1 0 2 2 2 1 MarR family PadR PF03551.9 gi|313117256|ref|YP_004044239.1| - 0.0095 15.6 0.1 0.013 15.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313117256|ref|YP_004044239.1| - 0.012 15.8 0.6 0.041 14.2 0.2 2.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_32 PF13565.1 gi|313117256|ref|YP_004044239.1| - 0.016 16.0 1.3 0.038 14.7 0.2 2.0 1 1 1 2 2 2 0 Homeodomain-like domain TrmB PF01978.14 gi|313117256|ref|YP_004044239.1| - 0.034 13.8 0.7 0.075 12.7 0.5 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313117256|ref|YP_004044239.1| - 0.047 13.4 0.5 0.072 12.9 0.4 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|313117256|ref|YP_004044239.1| - 0.049 13.6 0.2 0.088 12.8 0.1 1.4 1 0 0 1 1 1 0 Transposase Replic_Relax PF13814.1 gi|313117256|ref|YP_004044239.1| - 0.095 12.5 0.1 0.097 12.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_12 PF08461.5 gi|313117256|ref|YP_004044239.1| - 0.11 12.1 0.5 0.23 11.2 0.4 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Copper-bind PF00127.15 gi|313117257|ref|YP_004044240.1| - 6.3e-18 64.8 1.7 1.4e-17 63.7 1.2 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313117257|ref|YP_004044240.1| - 0.0016 18.2 2.4 0.029 14.2 1.7 2.2 1 1 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.15 gi|313117258|ref|YP_004044241.1| - 3.7e-15 55.8 0.0 8.1e-15 54.7 0.0 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|313117258|ref|YP_004044241.1| - 1.6e-07 31.1 0.0 4e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|313117258|ref|YP_004044241.1| - 0.00049 19.8 2.8 0.00083 19.1 1.9 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Trp_oprn_chp PF09534.5 gi|313117259|ref|YP_004044242.1| - 5.4 6.5 8.4 6.4 6.3 3.8 2.3 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) NosD PF05048.8 gi|313117260|ref|YP_004044243.1| - 1.2e-51 175.1 14.9 5.3e-49 166.5 7.8 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|313117260|ref|YP_004044243.1| - 9.7e-25 87.1 15.3 1.3e-17 63.9 2.3 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|313117260|ref|YP_004044243.1| - 3.7e-07 29.5 6.0 0.0088 15.2 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) VCBS PF13517.1 gi|313117260|ref|YP_004044243.1| - 0.0076 16.5 0.8 0.0076 16.5 0.5 3.0 3 0 0 3 3 3 1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Lsm_C PF14894.1 gi|313117260|ref|YP_004044243.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Lsm C-terminal ABC_tran PF00005.22 gi|313117261|ref|YP_004044244.1| - 6e-32 110.8 0.0 4.6e-31 107.9 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313117261|ref|YP_004044244.1| - 7e-11 42.6 0.1 3.3e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|313117261|ref|YP_004044244.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|313117261|ref|YP_004044244.1| - 0.012 15.1 0.3 1.4 8.2 0.2 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|313117261|ref|YP_004044244.1| - 0.014 14.8 0.6 0.028 13.9 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117261|ref|YP_004044244.1| - 0.044 13.0 0.0 9.1 5.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|313117261|ref|YP_004044244.1| - 0.053 13.4 0.2 0.77 9.7 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|313117261|ref|YP_004044244.1| - 0.059 12.4 0.0 0.55 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|313117262|ref|YP_004044245.1| - 1.9e-16 59.7 22.6 3.2e-16 59.0 15.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117262|ref|YP_004044245.1| - 6.6e-06 25.4 21.1 8.5e-06 25.0 14.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117262|ref|YP_004044245.1| - 0.0019 17.4 7.2 0.0035 16.6 5.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Sarcoglycan_1 PF04790.8 gi|313117263|ref|YP_004044246.1| - 1.2e-06 27.8 0.1 0.24 10.5 0.0 4.4 1 1 3 6 6 6 2 Sarcoglycan complex subunit protein Glyco_hydro_65C PF03633.10 gi|313117263|ref|YP_004044246.1| - 7.5e-05 22.7 9.9 2.2 8.4 0.0 6.9 5 2 2 8 8 8 2 Glycosyl hydrolase family 65, C-terminal domain DUF4098 PF13345.1 gi|313117263|ref|YP_004044246.1| - 7.6e-05 22.5 30.6 0.12 12.2 0.8 6.5 1 1 4 5 5 5 2 Domain of unknown function (DUF4098) FecR PF04773.8 gi|313117263|ref|YP_004044246.1| - 0.00021 21.4 5.1 8.7 6.6 0.0 5.5 1 1 3 5 5 5 1 FecR protein HtaA PF04213.8 gi|313117263|ref|YP_004044246.1| - 0.00023 21.4 18.3 0.02 15.1 1.4 4.6 1 1 3 4 4 4 2 Htaa DUF2345 PF10106.4 gi|313117263|ref|YP_004044246.1| - 0.00028 20.5 0.0 0.82 9.2 0.0 3.1 2 2 1 3 3 3 2 Uncharacterized protein conserved in bacteria (DUF2345) DUF945 PF06097.6 gi|313117263|ref|YP_004044246.1| - 0.00033 19.5 14.5 0.072 11.8 1.8 2.9 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF945) DUF3581 PF12119.3 gi|313117263|ref|YP_004044246.1| - 0.0022 17.2 0.3 2.3 7.3 0.0 3.1 2 1 0 3 3 3 2 Protein of unknown function (DUF3581) YabP PF07873.6 gi|313117263|ref|YP_004044246.1| - 0.0033 16.9 0.9 22 4.6 0.0 5.0 5 2 1 6 6 6 0 YabP family NAGLU_N PF12971.2 gi|313117263|ref|YP_004044246.1| - 0.006 16.2 7.4 2.5 7.8 0.0 5.2 3 2 2 5 5 5 1 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain DUF4097 PF13349.1 gi|313117263|ref|YP_004044246.1| - 0.0079 15.7 11.9 1.5 8.3 1.2 5.0 1 1 3 4 4 4 1 Domain of unknown function (DUF4097) DNA_pol3_beta PF00712.14 gi|313117263|ref|YP_004044246.1| - 0.01 15.7 4.6 3.3 7.6 0.1 4.6 3 3 2 5 5 5 0 DNA polymerase III beta subunit, N-terminal domain Ribosomal_L6 PF00347.18 gi|313117263|ref|YP_004044246.1| - 0.016 15.6 0.4 0.55 10.7 0.1 3.4 3 1 0 3 3 3 0 Ribosomal protein L6 LEA_2 PF03168.8 gi|313117263|ref|YP_004044246.1| - 0.022 15.1 0.0 61 4.0 0.0 4.3 2 2 3 5 5 5 0 Late embryogenesis abundant protein DUF108 PF01958.13 gi|313117263|ref|YP_004044246.1| - 0.036 14.3 0.1 26 5.1 0.0 4.2 2 2 2 4 4 4 0 Domain of unknown function DUF108 MORN_2 PF07661.8 gi|313117264|ref|YP_004044247.1| - 0.00011 21.8 0.0 42 4.6 0.0 5.3 5 0 0 5 5 5 1 MORN repeat variant zf-RING_3 PF14369.1 gi|313117264|ref|YP_004044247.1| - 0.029 14.3 0.2 0.07 13.1 0.2 1.7 1 0 0 1 1 1 0 zinc-finger Pterin_4a PF01329.14 gi|313117265|ref|YP_004044248.1| - 3e-29 100.6 0.5 3.5e-29 100.3 0.4 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase COQ7 PF03232.8 gi|313117265|ref|YP_004044248.1| - 0.12 11.8 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 FAD-oxidase_C PF02913.14 gi|313117266|ref|YP_004044249.1| - 1.1e-57 195.2 0.8 2.1e-57 194.3 0.5 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|313117266|ref|YP_004044249.1| - 2.2e-37 127.6 0.6 6.5e-37 126.1 0.2 2.0 2 1 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.1 gi|313117266|ref|YP_004044249.1| - 1.8e-09 37.8 4.8 3.2e-09 36.9 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313117266|ref|YP_004044249.1| - 9.2e-09 35.2 5.5 1.9e-08 34.1 3.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313117266|ref|YP_004044249.1| - 1.3e-06 28.7 2.3 9.9e-06 25.8 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.11 gi|313117266|ref|YP_004044249.1| - 1e-05 25.4 0.0 0.0019 18.1 0.0 2.7 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_7 PF12838.2 gi|313117266|ref|YP_004044249.1| - 0.00022 21.5 4.9 0.00049 20.4 3.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313117266|ref|YP_004044249.1| - 0.0028 17.4 9.5 0.31 11.0 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313117266|ref|YP_004044249.1| - 0.0031 17.3 3.4 0.068 13.0 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313117266|ref|YP_004044249.1| - 0.0094 15.7 10.1 0.056 13.2 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313117266|ref|YP_004044249.1| - 0.011 15.2 12.7 0.076 12.6 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313117266|ref|YP_004044249.1| - 0.022 15.0 1.9 0.022 15.0 1.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|313117266|ref|YP_004044249.1| - 0.23 11.9 11.7 0.34 11.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|313117266|ref|YP_004044249.1| - 1.1 9.3 11.2 2.2 8.3 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|313117266|ref|YP_004044249.1| - 1.3 9.4 4.2 9.3 6.7 0.1 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|313117266|ref|YP_004044249.1| - 1.5 9.4 13.2 0.29 11.7 0.1 4.3 4 0 0 4 4 3 0 4Fe-4S single cluster domain Glyoxalase_2 PF12681.2 gi|313117267|ref|YP_004044250.1| - 4.5e-17 62.6 0.4 5.2e-17 62.4 0.3 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313117267|ref|YP_004044250.1| - 2.9e-16 59.6 0.2 3.3e-16 59.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313117267|ref|YP_004044250.1| - 1.3e-13 50.8 0.2 7.6e-11 41.9 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313117267|ref|YP_004044250.1| - 8.3e-05 22.5 0.1 0.009 15.9 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain HpcH_HpaI PF03328.9 gi|313117268|ref|YP_004044251.1| - 7e-09 34.8 0.0 3e-08 32.8 0.0 2.0 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family IclR PF01614.13 gi|313117269|ref|YP_004044252.1| - 4.2e-31 107.3 0.4 1.3e-30 105.7 0.1 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_20 PF12840.2 gi|313117269|ref|YP_004044252.1| - 7.2e-07 28.9 0.0 1.9e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313117269|ref|YP_004044252.1| - 1.1e-05 24.8 0.3 3e-05 23.5 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117269|ref|YP_004044252.1| - 6.2e-05 22.5 0.0 0.00013 21.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117269|ref|YP_004044252.1| - 0.00016 21.2 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117269|ref|YP_004044252.1| - 0.00018 21.1 0.0 0.00041 19.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313117269|ref|YP_004044252.1| - 0.00033 20.2 0.1 0.0014 18.2 0.0 2.0 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.11 gi|313117269|ref|YP_004044252.1| - 0.015 14.8 0.0 0.041 13.4 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain PadR PF03551.9 gi|313117269|ref|YP_004044252.1| - 0.023 14.4 0.6 0.053 13.2 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|313117269|ref|YP_004044252.1| - 0.039 13.5 0.0 0.092 12.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.14 gi|313117269|ref|YP_004044252.1| - 0.063 13.2 0.1 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|313117269|ref|YP_004044252.1| - 0.075 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|313117269|ref|YP_004044252.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|313117269|ref|YP_004044252.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TENA_THI-4 PF03070.11 gi|313117271|ref|YP_004044254.1| - 1e-51 175.7 0.0 1.2e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.11 gi|313117272|ref|YP_004044255.1| - 8.6e-26 90.9 0.0 1.1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.12 gi|313117273|ref|YP_004044256.1| - 4e-31 108.0 29.0 5.3e-31 107.6 20.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TMEM191C PF15194.1 gi|313117273|ref|YP_004044256.1| - 0.073 12.9 0.4 0.073 12.9 0.3 2.6 2 1 0 2 2 2 0 TMEM191C family Nramp PF01566.13 gi|313117275|ref|YP_004044258.1| - 5e-63 213.0 36.6 5e-63 213.0 25.4 1.8 1 1 1 2 2 2 1 Natural resistance-associated macrophage protein UPF0278 PF08745.6 gi|313117277|ref|YP_004044260.1| - 1.9e-74 249.3 0.7 2.2e-74 249.1 0.5 1.0 1 0 0 1 1 1 1 UPF0278 family DUF4411 PF14367.1 gi|313117277|ref|YP_004044260.1| - 0.017 14.8 0.0 0.22 11.2 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) DNA_ligase_A_M PF01068.16 gi|313117278|ref|YP_004044261.1| - 1.9e-12 46.9 0.0 4.5e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|313117278|ref|YP_004044261.1| - 0.0005 19.9 0.0 0.0029 17.4 0.0 2.0 1 1 0 1 1 1 1 RNA ligase DUF4185 PF13810.1 gi|313117278|ref|YP_004044261.1| - 0.077 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4185) CBS PF00571.23 gi|313117279|ref|YP_004044262.1| - 2.1e-25 88.2 4.5 1.2e-12 47.3 0.1 2.2 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.16 gi|313117280|ref|YP_004044263.1| - 2e-33 115.5 43.7 2.6e-33 115.1 30.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|313117280|ref|YP_004044263.1| - 6.7e-29 100.2 0.9 6.7e-29 100.2 0.6 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|313117280|ref|YP_004044263.1| - 1.1e-09 37.6 0.1 4.1e-09 35.8 0.1 2.0 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|313117280|ref|YP_004044263.1| - 3.8e-06 27.0 0.2 8.3e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|313117280|ref|YP_004044263.1| - 0.00054 19.4 0.1 0.0014 18.0 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|313117280|ref|YP_004044263.1| - 0.0012 19.1 1.6 0.0022 18.4 0.2 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|313117280|ref|YP_004044263.1| - 0.002 17.2 0.1 0.0031 16.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|313117280|ref|YP_004044263.1| - 0.0027 17.0 0.0 0.0055 16.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|313117280|ref|YP_004044263.1| - 0.0036 17.6 0.1 0.0077 16.5 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|313117280|ref|YP_004044263.1| - 0.0055 15.7 0.2 0.01 14.8 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase Lipase_GDSL_2 PF13472.1 gi|313117280|ref|YP_004044263.1| - 0.0087 16.2 0.3 4.2 7.4 0.0 2.4 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family NAD_Gly3P_dh_N PF01210.18 gi|313117280|ref|YP_004044263.1| - 0.014 15.1 0.6 0.076 12.7 0.0 2.4 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|313117280|ref|YP_004044263.1| - 0.019 14.1 0.5 0.07 12.2 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|313117280|ref|YP_004044263.1| - 0.026 14.3 0.1 0.056 13.2 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Usp PF00582.21 gi|313117281|ref|YP_004044264.1| - 1.5e-62 209.8 7.7 1e-31 110.0 1.7 2.0 2 0 0 2 2 2 2 Universal stress protein family DXP_reductoisom PF02670.11 gi|313117281|ref|YP_004044264.1| - 0.025 15.1 0.1 0.84 10.1 0.0 2.4 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase FR47 PF08445.5 gi|313117281|ref|YP_004044264.1| - 0.19 11.4 1.2 8.6 6.2 0.0 2.7 3 0 0 3 3 3 0 FR47-like protein HTH_20 PF12840.2 gi|313117282|ref|YP_004044265.1| - 7.2e-10 38.5 0.2 1.1e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313117282|ref|YP_004044265.1| - 7e-08 31.9 0.3 3.2e-07 29.8 0.2 2.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313117282|ref|YP_004044265.1| - 0.00054 19.5 0.2 0.00094 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117282|ref|YP_004044265.1| - 0.00074 19.1 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313117282|ref|YP_004044265.1| - 0.0021 17.4 0.0 0.0033 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313117282|ref|YP_004044265.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|313117282|ref|YP_004044265.1| - 0.025 13.8 0.0 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator FUR PF01475.14 gi|313117282|ref|YP_004044265.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family DUF742 PF05331.6 gi|313117282|ref|YP_004044265.1| - 0.03 13.9 0.2 0.034 13.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_10 PF04967.7 gi|313117283|ref|YP_004044266.1| - 1.5e-21 75.7 0.2 2.3e-21 75.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|313117283|ref|YP_004044266.1| - 0.0017 17.9 0.0 0.0059 16.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117283|ref|YP_004044266.1| - 0.0069 16.0 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family GerE PF00196.14 gi|313117283|ref|YP_004044266.1| - 0.013 14.8 0.2 0.87 8.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|313117283|ref|YP_004044266.1| - 0.016 14.6 0.1 0.056 12.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313117283|ref|YP_004044266.1| - 0.026 14.3 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|313117283|ref|YP_004044266.1| - 0.056 13.6 0.1 0.88 9.8 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|313117283|ref|YP_004044266.1| - 0.057 13.1 0.1 0.17 11.6 0.0 1.8 1 1 0 1 1 1 0 MarR family Homeobox PF00046.24 gi|313117283|ref|YP_004044266.1| - 0.089 12.4 0.1 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 Homeobox domain Fe_dep_repress PF01325.14 gi|313117283|ref|YP_004044266.1| - 0.094 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r3 PF04539.11 gi|313117283|ref|YP_004044266.1| - 0.098 12.5 0.9 0.18 11.7 0.1 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_27 PF13463.1 gi|313117283|ref|YP_004044266.1| - 0.12 12.6 0.1 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|313117283|ref|YP_004044266.1| - 0.13 11.8 1.1 1.1 8.8 0.7 2.2 1 1 0 1 1 1 0 LexA DNA binding domain Zn-ribbon_8 PF09723.5 gi|313117284|ref|YP_004044267.1| - 0.00023 21.0 0.3 0.0003 20.6 0.2 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Elf1 PF05129.8 gi|313117284|ref|YP_004044267.1| - 0.00085 18.9 0.2 0.00086 18.9 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|313117284|ref|YP_004044267.1| - 0.017 14.2 0.8 0.6 9.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|313117284|ref|YP_004044267.1| - 0.019 14.8 0.2 0.024 14.5 0.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Di19 PF05605.7 gi|313117284|ref|YP_004044267.1| - 0.21 11.7 1.2 1.9 8.6 0.8 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF2180 PF09947.4 gi|313117284|ref|YP_004044267.1| - 0.36 10.6 2.3 1.7 8.4 1.6 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-HIT PF04438.11 gi|313117284|ref|YP_004044267.1| - 0.63 9.7 2.7 6.7 6.4 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger AA_permease_2 PF13520.1 gi|313117285|ref|YP_004044268.1| - 6.3e-42 143.5 36.0 7.6e-42 143.3 25.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|313117285|ref|YP_004044268.1| - 1.4e-37 129.2 36.4 1.7e-37 128.8 25.2 1.0 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|313117286|ref|YP_004044269.1| - 3.6e-11 43.4 8.8 2.6e-08 34.1 2.2 2.2 2 0 0 2 2 2 2 Universal stress protein family Copper-bind PF00127.15 gi|313117287|ref|YP_004044270.1| - 4.3e-19 68.5 0.1 1.1e-18 67.2 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313117287|ref|YP_004044270.1| - 6.7e-05 22.7 0.0 0.038 13.8 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain Na_Ca_ex PF01699.19 gi|313117288|ref|YP_004044271.1| - 6e-35 119.8 26.7 1.7e-21 76.2 7.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4131 PF13567.1 gi|313117288|ref|YP_004044271.1| - 0.11 11.9 2.1 11 5.3 0.7 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) CBS PF00571.23 gi|313117289|ref|YP_004044272.1| - 1.3e-36 124.1 19.4 1.5e-12 47.1 0.7 4.8 5 0 0 5 5 5 4 CBS domain GATase PF00117.23 gi|313117290|ref|YP_004044273.1| - 8.8e-22 77.4 0.0 1.1e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313117290|ref|YP_004044273.1| - 7.5e-06 25.5 0.0 3.2e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|313117290|ref|YP_004044273.1| - 0.0026 16.5 0.0 0.0048 15.6 0.0 1.4 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|313117290|ref|YP_004044273.1| - 0.025 14.1 0.0 0.042 13.4 0.0 1.6 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Oxidored_q2 PF00420.19 gi|313117291|ref|YP_004044274.1| - 1.1 8.9 6.8 5 6.7 4.5 1.9 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2583 PF10762.4 gi|313117291|ref|YP_004044274.1| - 2.9 8.0 5.0 2 8.5 1.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) Ion_trans_2 PF07885.11 gi|313117291|ref|YP_004044274.1| - 4.8 6.9 12.0 1.2e+02 2.4 0.0 3.1 2 1 0 2 2 2 0 Ion channel UPF0047 PF01894.12 gi|313117292|ref|YP_004044275.1| - 2.4e-39 133.7 0.0 2.7e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Usp PF00582.21 gi|313117293|ref|YP_004044276.1| - 3.3e-27 95.3 0.6 3.8e-27 95.1 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family TPR_12 PF13424.1 gi|313117293|ref|YP_004044276.1| - 0.045 13.6 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat E1-E2_ATPase PF00122.15 gi|313117295|ref|YP_004044278.1| - 1.6e-44 151.6 0.2 4.1e-44 150.3 0.1 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|313117295|ref|YP_004044278.1| - 4.7e-37 128.4 3.6 4.7e-37 128.4 2.5 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|313117295|ref|YP_004044278.1| - 7.8e-09 35.5 0.0 2.5e-08 33.9 0.0 1.9 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.2 gi|313117295|ref|YP_004044278.1| - 1e-08 35.5 0.0 2.2e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|313117295|ref|YP_004044278.1| - 0.0021 17.6 0.1 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|313117295|ref|YP_004044278.1| - 0.018 15.5 0.1 0.063 13.8 0.1 1.9 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase HCV_NS4a PF01006.15 gi|313117295|ref|YP_004044278.1| - 0.028 13.9 4.0 0.05 13.1 1.2 2.7 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a DsbD_2 PF13386.1 gi|313117296|ref|YP_004044279.1| - 1.9e-41 142.0 14.3 2.2e-41 141.7 9.9 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Oxidored_q5_N PF01059.12 gi|313117297|ref|YP_004044280.1| - 0.055 13.3 0.1 0.061 13.2 0.1 1.0 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus PepSY_TM_1 PF13172.1 gi|313117297|ref|YP_004044280.1| - 6.8 6.5 7.0 4.5 7.1 0.3 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix COX2 PF00116.15 gi|313117299|ref|YP_004044282.1| - 1.2e-23 83.2 0.1 1.5e-23 82.8 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|313117299|ref|YP_004044282.1| - 0.0081 16.0 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.5 gi|313117299|ref|YP_004044282.1| - 0.018 14.6 0.6 0.032 13.7 0.4 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.15 gi|313117300|ref|YP_004044283.1| - 3.1e-72 243.6 55.1 3.1e-72 243.6 38.2 1.9 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I BacA PF02673.13 gi|313117303|ref|YP_004044286.1| - 0.0074 15.5 0.8 0.0074 15.5 0.5 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA PsbN PF02468.10 gi|313117303|ref|YP_004044286.1| - 1.4 8.5 5.3 13 5.5 0.2 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) PGPGW PF09656.5 gi|313117303|ref|YP_004044286.1| - 4.6 6.6 7.3 0.94 8.8 0.9 2.0 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) SNARE_assoc PF09335.6 gi|313117304|ref|YP_004044287.1| - 9e-24 84.0 5.2 9e-24 84.0 3.6 2.6 2 2 0 2 2 2 1 SNARE associated Golgi protein CD20 PF04103.10 gi|313117304|ref|YP_004044287.1| - 0.29 11.0 6.7 0.04 13.8 1.5 1.8 2 0 0 2 2 2 0 CD20-like family DUF4191 PF13829.1 gi|313117304|ref|YP_004044287.1| - 1.3 8.0 7.4 0.98 8.4 0.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) GtrA PF04138.9 gi|313117304|ref|YP_004044287.1| - 2.8 7.9 17.1 2.7 7.9 3.6 3.4 2 1 1 3 3 3 0 GtrA-like protein Bacteriocin_IIc PF10439.4 gi|313117304|ref|YP_004044287.1| - 2.8 8.1 6.4 4 7.6 0.9 2.3 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide MCPsignal PF00015.16 gi|313117305|ref|YP_004044288.1| - 7.7e-49 166.1 40.3 7.7e-49 166.1 27.9 3.6 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313117305|ref|YP_004044288.1| - 3.5e-17 62.3 0.3 3.5e-17 62.3 0.2 5.1 3 1 1 4 4 4 1 HAMP domain Cache_1 PF02743.13 gi|313117305|ref|YP_004044288.1| - 1.7e-14 53.1 1.0 5.3e-09 35.5 0.1 3.7 3 0 0 3 3 3 2 Cache domain AAA_27 PF13514.1 gi|313117305|ref|YP_004044288.1| - 0.00084 17.1 34.7 0.00084 17.1 24.0 1.8 2 1 0 2 2 2 1 AAA domain Laminin_II PF06009.7 gi|313117305|ref|YP_004044288.1| - 0.01 15.6 4.4 0.01 15.6 3.0 4.8 2 2 2 4 4 4 0 Laminin Domain II COG2 PF06148.6 gi|313117305|ref|YP_004044288.1| - 0.22 11.3 27.0 0.077 12.8 0.2 5.2 4 1 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_I PF06008.9 gi|313117305|ref|YP_004044288.1| - 0.44 9.8 38.5 0.3 10.3 17.6 3.6 1 1 1 2 2 2 0 Laminin Domain I CorA PF01544.13 gi|313117305|ref|YP_004044288.1| - 0.48 9.4 23.0 3 6.7 0.5 4.2 1 1 2 4 4 4 0 CorA-like Mg2+ transporter protein GAS PF13851.1 gi|313117305|ref|YP_004044288.1| - 1.1 8.4 25.5 0.6 9.2 7.9 3.7 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF21 PF01595.15 gi|313117306|ref|YP_004044289.1| - 2.4e-29 101.9 0.3 3.5e-29 101.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|313117306|ref|YP_004044289.1| - 9.1e-14 50.9 0.9 4.9e-07 29.4 0.0 2.4 2 0 0 2 2 2 2 CBS domain Pribosyltran PF00156.22 gi|313117307|ref|YP_004044290.1| - 2.8e-27 94.9 0.2 4.2e-27 94.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|313117307|ref|YP_004044290.1| - 0.00047 19.5 0.0 0.0095 15.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|313117307|ref|YP_004044290.1| - 0.00053 19.2 0.0 0.00081 18.6 0.0 1.5 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase Abhydrolase_5 PF12695.2 gi|313117308|ref|YP_004044291.1| - 1.3e-19 70.3 0.2 1.6e-19 70.1 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|313117308|ref|YP_004044291.1| - 2.1e-13 50.6 1.7 2.8e-06 27.3 0.4 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|313117308|ref|YP_004044291.1| - 1e-07 31.4 0.0 1.6e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|313117308|ref|YP_004044291.1| - 3.3e-05 23.1 0.5 0.15 11.2 0.1 2.9 2 1 1 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|313117308|ref|YP_004044291.1| - 0.00013 21.5 0.0 0.0043 16.6 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|313117308|ref|YP_004044291.1| - 0.00016 21.4 0.0 0.067 12.8 0.0 2.1 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.13 gi|313117308|ref|YP_004044291.1| - 0.00032 20.2 0.0 0.0037 16.7 0.0 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.11 gi|313117308|ref|YP_004044291.1| - 0.013 14.9 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.8 gi|313117308|ref|YP_004044291.1| - 0.11 10.7 0.0 6.5 4.9 0.0 2.0 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II SBP_bac_8 PF13416.1 gi|313117309|ref|YP_004044292.1| - 3.5e-50 171.3 13.2 4.4e-50 171.0 8.9 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313117309|ref|YP_004044292.1| - 5e-30 105.3 11.2 7.2e-30 104.7 7.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313117309|ref|YP_004044292.1| - 0.00016 21.0 0.1 0.049 12.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313117309|ref|YP_004044292.1| - 0.01 15.5 1.2 1.3 8.6 0.1 2.6 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|313117309|ref|YP_004044292.1| - 0.041 13.8 0.0 0.15 12.1 0.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FmdE PF02663.9 gi|313117309|ref|YP_004044292.1| - 0.14 12.0 0.2 0.48 10.3 0.0 1.9 2 0 0 2 2 2 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon BPD_transp_1 PF00528.17 gi|313117310|ref|YP_004044293.1| - 2.4e-13 50.0 13.5 2.4e-13 50.0 9.3 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313117311|ref|YP_004044294.1| - 6.3e-17 61.6 17.3 6.3e-17 61.6 12.0 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.1 gi|313117311|ref|YP_004044294.1| - 0.12 12.3 0.0 0.7 9.9 0.0 2.0 2 0 0 2 2 2 0 IS66 C-terminal element ABC_tran PF00005.22 gi|313117312|ref|YP_004044295.1| - 8.1e-33 113.6 0.0 1.3e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313117312|ref|YP_004044295.1| - 6.2e-11 42.1 0.5 9.1e-10 38.4 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|313117312|ref|YP_004044295.1| - 5.5e-08 33.1 0.0 0.006 16.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|313117312|ref|YP_004044295.1| - 7.4e-05 22.7 0.4 0.021 14.8 0.1 3.5 3 0 0 3 3 3 1 TOBE domain AAA_22 PF13401.1 gi|313117312|ref|YP_004044295.1| - 0.00078 19.5 0.1 0.0017 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|313117312|ref|YP_004044295.1| - 0.0016 17.2 0.0 0.0024 16.6 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|313117312|ref|YP_004044295.1| - 0.0016 18.3 0.0 0.0039 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313117312|ref|YP_004044295.1| - 0.002 17.3 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313117312|ref|YP_004044295.1| - 0.0027 17.7 1.4 0.004 17.1 0.2 2.0 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|313117312|ref|YP_004044295.1| - 0.0032 16.7 0.0 0.031 13.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|313117312|ref|YP_004044295.1| - 0.011 15.1 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313117312|ref|YP_004044295.1| - 0.016 14.3 0.0 0.042 13.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|313117312|ref|YP_004044295.1| - 0.017 14.6 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|313117312|ref|YP_004044295.1| - 0.037 14.2 0.0 0.076 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313117312|ref|YP_004044295.1| - 0.047 13.1 0.1 0.094 12.1 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|313117312|ref|YP_004044295.1| - 0.072 13.9 0.5 0.18 12.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313117312|ref|YP_004044295.1| - 0.091 12.4 0.4 0.4 10.4 0.1 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|313117312|ref|YP_004044295.1| - 0.097 13.1 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein NACHT PF05729.7 gi|313117312|ref|YP_004044295.1| - 0.14 11.8 0.3 0.34 10.5 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|313117312|ref|YP_004044295.1| - 0.16 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313117312|ref|YP_004044295.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|313117312|ref|YP_004044295.1| - 0.16 10.9 0.0 2.1 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Lipase_chap PF03280.9 gi|313117315|ref|YP_004044298.1| - 0.0051 16.3 0.4 0.4 10.1 0.1 2.1 2 0 0 2 2 2 2 Proteobacterial lipase chaperone protein Peripla_BP_2 PF01497.13 gi|313117316|ref|YP_004044299.1| - 1.9e-13 50.0 0.0 6.1e-13 48.4 0.0 1.7 1 1 1 2 2 2 1 Periplasmic binding protein Glyco_hyd_65N_2 PF14498.1 gi|313117316|ref|YP_004044299.1| - 0.046 13.4 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain HEAT_2 PF13646.1 gi|313117317|ref|YP_004044300.1| - 5.8e-15 55.3 13.7 4.7e-07 30.0 0.8 3.6 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|313117317|ref|YP_004044300.1| - 1.6e-09 36.9 3.9 0.04 13.9 0.0 5.3 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|313117317|ref|YP_004044300.1| - 3.4e-09 36.9 20.7 0.0055 17.1 0.1 5.3 2 1 4 6 6 6 4 HEAT-like repeat Adaptin_N PF01602.15 gi|313117317|ref|YP_004044300.1| - 0.00022 19.6 0.0 0.31 9.3 0.0 2.3 1 1 1 3 3 3 3 Adaptin N terminal region DZR PF12773.2 gi|313117317|ref|YP_004044300.1| - 0.00087 19.0 0.8 0.0017 18.1 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon Cnd1 PF12717.2 gi|313117317|ref|YP_004044300.1| - 0.0056 16.5 0.0 1.4 8.7 0.0 2.6 2 2 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 zf-ribbon_3 PF13248.1 gi|313117317|ref|YP_004044300.1| - 0.015 14.4 5.5 0.042 13.0 3.8 1.8 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|313117317|ref|YP_004044300.1| - 0.019 14.4 6.4 0.022 14.2 3.4 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313117317|ref|YP_004044300.1| - 0.02 14.6 0.4 0.039 13.6 0.2 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HEAT_PBS PF03130.11 gi|313117317|ref|YP_004044300.1| - 0.11 13.0 12.9 6.3 7.5 0.8 4.9 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat Cdc6_C PF09079.6 gi|313117318|ref|YP_004044301.1| - 7.7e-16 57.5 0.2 2.4e-15 56.0 0.0 2.0 2 0 0 2 2 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|313117318|ref|YP_004044301.1| - 1.4e-10 41.3 0.0 3.3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117318|ref|YP_004044301.1| - 8.2e-10 38.9 0.3 6e-09 36.1 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|313117318|ref|YP_004044301.1| - 0.0003 19.7 0.0 0.00046 19.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Arch_ATPase PF01637.13 gi|313117318|ref|YP_004044301.1| - 0.00034 20.4 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|313117318|ref|YP_004044301.1| - 0.0024 18.0 0.0 0.0084 16.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.1 gi|313117318|ref|YP_004044301.1| - 0.0034 16.0 0.2 0.092 11.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|313117318|ref|YP_004044301.1| - 0.0035 17.4 0.0 0.0073 16.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase T2SE PF00437.15 gi|313117318|ref|YP_004044301.1| - 0.0076 15.1 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|313117318|ref|YP_004044301.1| - 0.019 14.4 0.3 0.67 9.4 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase PIF1 PF05970.9 gi|313117318|ref|YP_004044301.1| - 0.02 13.8 0.0 0.042 12.7 0.0 1.4 2 0 0 2 2 2 0 PIF1-like helicase AAA_24 PF13479.1 gi|313117318|ref|YP_004044301.1| - 0.026 14.1 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|313117318|ref|YP_004044301.1| - 0.036 13.5 0.1 0.077 12.4 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|313117318|ref|YP_004044301.1| - 0.037 13.6 0.0 0.08 12.5 0.0 1.5 1 1 0 1 1 1 0 NACHT domain Kinesin PF00225.18 gi|313117318|ref|YP_004044301.1| - 0.043 12.5 0.0 0.066 11.9 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain DUF258 PF03193.11 gi|313117318|ref|YP_004044301.1| - 0.044 12.9 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|313117318|ref|YP_004044301.1| - 0.044 12.7 0.0 0.29 10.0 0.0 1.9 1 1 1 2 2 2 0 KAP family P-loop domain AAA_10 PF12846.2 gi|313117318|ref|YP_004044301.1| - 0.045 13.1 0.6 0.19 11.1 0.5 2.2 1 1 0 1 1 1 0 AAA-like domain TrwB_AAD_bind PF10412.4 gi|313117318|ref|YP_004044301.1| - 0.065 11.8 0.0 0.74 8.3 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF3987 PF13148.1 gi|313117318|ref|YP_004044301.1| - 0.086 11.3 0.0 0.31 9.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_5 PF07728.9 gi|313117318|ref|YP_004044301.1| - 0.092 12.4 0.0 0.43 10.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|313117318|ref|YP_004044301.1| - 0.11 12.0 0.0 0.35 10.4 0.0 1.9 2 1 0 2 2 2 0 Bacterial dnaA protein AFOR_C PF01314.13 gi|313117319|ref|YP_004044302.1| - 2.3e-75 253.6 0.5 9.8e-75 251.6 0.4 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|313117319|ref|YP_004044302.1| - 2.5e-55 186.9 0.1 4.3e-55 186.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SBP_bac_6 PF13343.1 gi|313117320|ref|YP_004044303.1| - 9e-22 77.5 0.0 1.4e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|313117320|ref|YP_004044303.1| - 8.8e-19 68.3 0.7 1.3e-18 67.7 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313117320|ref|YP_004044303.1| - 8.1e-15 55.3 3.3 8.4e-15 55.3 0.8 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313117320|ref|YP_004044303.1| - 5.2e-11 42.6 0.0 9.7e-11 41.7 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|313117321|ref|YP_004044304.1| - 6.5e-11 42.0 15.5 1.1e-10 41.3 10.7 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PepSY_TM PF03929.11 gi|313117321|ref|YP_004044304.1| - 0.15 12.5 0.0 0.15 12.5 0.0 4.3 5 0 0 5 5 5 0 PepSY-associated TM helix BPD_transp_1 PF00528.17 gi|313117322|ref|YP_004044305.1| - 3.4e-09 36.4 11.7 3.4e-09 36.4 8.1 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ycf9 PF01737.12 gi|313117322|ref|YP_004044305.1| - 0.023 14.1 0.1 0.023 14.1 0.1 2.8 3 0 0 3 3 3 0 YCF9 Chordopox_L2 PF05803.7 gi|313117322|ref|YP_004044305.1| - 0.13 11.8 0.3 0.26 10.9 0.2 1.4 1 0 0 1 1 1 0 Chordopoxvirus L2 protein ABC_tran PF00005.22 gi|313117323|ref|YP_004044306.1| - 6e-37 126.9 0.0 8.1e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117323|ref|YP_004044306.1| - 1.1e-10 41.9 0.0 5.7e-06 26.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|313117323|ref|YP_004044306.1| - 0.00046 19.3 0.0 0.039 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|313117323|ref|YP_004044306.1| - 0.0027 16.4 0.0 0.0038 15.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|313117323|ref|YP_004044306.1| - 0.012 14.8 0.4 0.7 9.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313117323|ref|YP_004044306.1| - 0.014 15.5 0.3 0.063 13.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|313117323|ref|YP_004044306.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|313117323|ref|YP_004044306.1| - 0.025 14.5 2.6 0.055 13.4 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|313117323|ref|YP_004044306.1| - 0.033 13.0 0.2 0.056 12.2 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|313117323|ref|YP_004044306.1| - 0.054 13.3 0.0 0.83 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|313117323|ref|YP_004044306.1| - 0.057 12.9 0.3 0.097 12.2 0.2 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|313117323|ref|YP_004044306.1| - 0.068 13.1 0.2 0.72 9.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313117323|ref|YP_004044306.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|313117323|ref|YP_004044306.1| - 0.11 12.6 1.5 0.91 9.7 0.7 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|313117323|ref|YP_004044306.1| - 0.12 13.1 2.3 0.32 11.8 1.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|313117323|ref|YP_004044306.1| - 0.18 11.3 0.3 0.34 10.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|313117323|ref|YP_004044306.1| - 0.19 11.4 0.5 0.33 10.6 0.4 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|313117323|ref|YP_004044306.1| - 0.24 11.6 1.0 0.39 10.9 0.7 1.3 1 0 0 1 1 1 0 AAA domain PQQ_2 PF13360.1 gi|313117324|ref|YP_004044307.1| - 2e-39 135.4 12.8 4.7e-21 75.3 3.0 3.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|313117324|ref|YP_004044307.1| - 6.6e-22 75.8 8.3 0.0015 17.9 0.1 7.0 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|313117324|ref|YP_004044307.1| - 3e-20 71.8 27.9 0.0022 18.2 0.0 8.8 8 1 0 8 8 8 6 PQQ-like domain ABC2_membrane_2 PF12679.2 gi|313117326|ref|YP_004044309.1| - 1.8e-14 53.2 1.4 5.7e-14 51.6 0.9 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117326|ref|YP_004044309.1| - 6.6e-12 45.0 3.0 6.6e-12 45.0 2.1 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein Ycf4 PF02392.11 gi|313117326|ref|YP_004044309.1| - 0.021 14.1 0.6 0.039 13.2 0.4 1.4 1 0 0 1 1 1 0 Ycf4 ABC_tran PF00005.22 gi|313117327|ref|YP_004044310.1| - 8.8e-28 97.3 0.0 2.3e-27 95.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313117327|ref|YP_004044310.1| - 1e-11 45.3 0.0 4.1e-07 30.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|313117327|ref|YP_004044310.1| - 4.3e-05 23.9 0.2 6.2e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|313117327|ref|YP_004044310.1| - 0.0022 17.4 0.2 0.0045 16.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313117327|ref|YP_004044310.1| - 0.025 14.9 0.5 0.043 14.1 0.3 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|313117327|ref|YP_004044310.1| - 0.046 12.9 0.3 2.1 7.5 0.0 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|313117327|ref|YP_004044310.1| - 0.064 12.6 0.1 0.6 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|313117327|ref|YP_004044310.1| - 0.098 12.0 0.8 0.25 10.7 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC2_membrane_2 PF12679.2 gi|313117330|ref|YP_004044313.1| - 1.3e-34 119.3 36.5 7.5e-20 70.9 7.5 2.6 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117330|ref|YP_004044313.1| - 2e-13 50.0 18.1 2e-13 50.0 12.5 3.4 2 2 2 4 4 4 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117330|ref|YP_004044313.1| - 5e-07 29.0 48.8 1e-05 24.8 14.0 2.5 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313117331|ref|YP_004044314.1| - 1.7e-28 99.6 0.0 3.1e-28 98.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117331|ref|YP_004044314.1| - 2.9e-13 50.4 0.0 1.2e-07 32.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313117331|ref|YP_004044314.1| - 5.1e-06 25.9 0.0 1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|313117331|ref|YP_004044314.1| - 1.9e-05 25.0 0.0 3.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|313117331|ref|YP_004044314.1| - 0.0018 18.6 0.3 0.0028 18.0 0.2 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|313117331|ref|YP_004044314.1| - 0.013 14.3 0.1 0.049 12.3 0.0 1.8 2 0 0 2 2 2 0 ArgK protein DUF258 PF03193.11 gi|313117331|ref|YP_004044314.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|313117331|ref|YP_004044314.1| - 0.018 14.2 0.0 0.071 12.3 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.3 gi|313117331|ref|YP_004044314.1| - 0.034 13.8 0.1 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter SRP54 PF00448.17 gi|313117331|ref|YP_004044314.1| - 0.046 13.1 0.0 0.075 12.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|313117331|ref|YP_004044314.1| - 0.056 13.0 0.0 0.12 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313117331|ref|YP_004044314.1| - 0.084 13.0 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|313117331|ref|YP_004044314.1| - 0.09 12.7 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|313117331|ref|YP_004044314.1| - 0.11 12.4 0.0 0.7 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF4258 PF14076.1 gi|313117333|ref|YP_004044316.1| - 0.11 12.5 2.2 0.22 11.5 1.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4258) Tubulin PF00091.20 gi|313117335|ref|YP_004044318.1| - 2.5e-23 83.0 0.0 4.7e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF1616 PF07760.6 gi|313117336|ref|YP_004044319.1| - 4.3e-95 318.1 0.2 4.8e-95 317.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|313117336|ref|YP_004044319.1| - 0.15 11.4 7.4 3.4 7.0 2.4 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4231 PF14015.1 gi|313117336|ref|YP_004044319.1| - 5.7 6.9 8.8 0.19 11.7 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) DUF4129 PF13559.1 gi|313117337|ref|YP_004044320.1| - 2.3e-07 30.6 1.6 1.4e-06 28.1 1.1 2.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|313117337|ref|YP_004044320.1| - 9e-07 28.8 13.2 0.0043 17.0 0.8 4.5 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain CaMBD PF02888.11 gi|313117337|ref|YP_004044320.1| - 0.00037 20.2 0.1 0.00078 19.2 0.1 1.5 1 0 0 1 1 1 1 Calmodulin binding domain DUF4480 PF13715.1 gi|313117337|ref|YP_004044320.1| - 0.014 15.3 6.8 3 7.9 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4480) DUF58 PF01882.13 gi|313117338|ref|YP_004044321.1| - 2.4e-19 69.2 0.0 5.4e-19 68.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|313117338|ref|YP_004044321.1| - 0.005 16.9 0.1 0.0084 16.2 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4381 PF14316.1 gi|313117339|ref|YP_004044322.1| - 2.1 8.4 5.8 0.33 11.0 0.8 2.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4381) AAA_3 PF07726.6 gi|313117341|ref|YP_004044324.1| - 1.2e-61 206.0 0.5 2.8e-61 204.9 0.2 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313117341|ref|YP_004044324.1| - 1.6e-13 50.5 0.0 2.9e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|313117341|ref|YP_004044324.1| - 1.8e-07 30.2 0.1 3.9e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|313117341|ref|YP_004044324.1| - 8.8e-06 25.0 0.5 0.008 15.3 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|313117341|ref|YP_004044324.1| - 1.8e-05 24.2 0.1 8.6e-05 22.0 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|313117341|ref|YP_004044324.1| - 0.00011 21.2 0.3 0.00066 18.7 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|313117341|ref|YP_004044324.1| - 0.00019 21.6 1.2 0.00043 20.4 0.1 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313117341|ref|YP_004044324.1| - 0.085 13.0 0.0 0.72 9.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|313117341|ref|YP_004044324.1| - 0.14 12.1 0.8 0.35 10.8 0.0 2.0 3 1 0 3 3 3 0 AAA ATPase domain DUF4350 PF14258.1 gi|313117342|ref|YP_004044325.1| - 2.1e-11 43.8 9.9 7.1e-09 35.7 0.1 3.6 3 1 1 4 4 4 2 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|313117342|ref|YP_004044325.1| - 0.019 14.4 0.0 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF4159 PF13709.1 gi|313117342|ref|YP_004044325.1| - 0.022 13.8 0.0 0.045 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) TauE PF01925.14 gi|313117343|ref|YP_004044326.1| - 0.0057 16.1 2.0 0.0063 15.9 1.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF606 PF04657.8 gi|313117343|ref|YP_004044326.1| - 0.025 14.6 2.4 0.055 13.5 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF606 DUF3429 PF11911.3 gi|313117343|ref|YP_004044326.1| - 0.029 14.3 3.7 0.034 14.1 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) Imp-YgjV PF10688.4 gi|313117343|ref|YP_004044326.1| - 0.054 12.9 2.1 0.07 12.5 1.4 1.0 1 0 0 1 1 1 0 Bacterial inner membrane protein YlaC PF10777.4 gi|313117343|ref|YP_004044326.1| - 0.067 12.7 1.6 0.079 12.5 1.1 1.2 1 0 0 1 1 1 0 Inner membrane protein YlaC DUF2537 PF10801.3 gi|313117343|ref|YP_004044326.1| - 0.18 11.9 4.6 0.24 11.5 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2537) O-antigen_lig PF13425.1 gi|313117343|ref|YP_004044326.1| - 0.19 11.7 5.7 0.23 11.4 4.0 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Acyl_transf_3 PF01757.17 gi|313117343|ref|YP_004044326.1| - 0.28 9.9 7.2 0.19 10.5 4.0 1.3 1 1 0 1 1 1 0 Acyltransferase family CARDB PF07705.6 gi|313117345|ref|YP_004044328.1| - 3.7e-32 110.3 74.9 1.9e-08 34.2 3.8 10.5 9 1 1 10 10 10 6 CARDB Prenyltrans_2 PF13249.1 gi|313117345|ref|YP_004044328.1| - 1.6e-17 63.8 10.1 4.8e-11 43.0 2.4 3.1 2 0 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|313117345|ref|YP_004044328.1| - 6.1e-15 55.1 11.8 5e-08 32.9 2.0 3.9 2 1 1 3 3 3 3 Prenyltransferase-like Prenyltrans PF00432.16 gi|313117345|ref|YP_004044328.1| - 2.9e-06 26.7 6.7 5.7 6.6 0.1 5.5 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat Thiol-ester_cl PF10569.4 gi|313117345|ref|YP_004044328.1| - 2.5e-05 23.4 0.4 5.8e-05 22.2 0.3 1.6 1 0 0 1 1 1 1 Alpha-macro-globulin thiol-ester bond-forming region A2M_comp PF07678.9 gi|313117345|ref|YP_004044328.1| - 2.8e-05 23.4 3.1 0.0031 16.7 2.2 3.4 1 1 0 1 1 1 1 A-macroglobulin complement component Transglut_C PF00927.17 gi|313117345|ref|YP_004044328.1| - 9.7e-05 22.3 8.5 10 6.2 0.0 7.0 8 0 0 8 8 8 2 Transglutaminase family, C-terminal ig like domain DUF2393 PF09624.5 gi|313117345|ref|YP_004044328.1| - 0.016 14.6 2.2 0.31 10.5 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) DUF824 PF05688.6 gi|313117345|ref|YP_004044328.1| - 8 6.1 13.5 5.9 6.6 0.5 4.6 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) Dockerin_1 PF00404.13 gi|313117346|ref|YP_004044329.1| - 9e-07 28.3 10.5 0.00012 21.5 0.3 3.2 3 0 0 3 3 3 2 Dockerin type I repeat PEGA PF08308.6 gi|313117346|ref|YP_004044329.1| - 0.00098 18.8 1.0 0.38 10.5 0.1 3.3 3 0 0 3 3 3 2 PEGA domain YtkA PF13115.1 gi|313117346|ref|YP_004044329.1| - 0.026 14.8 9.4 1.1 9.6 0.1 4.4 4 1 1 5 5 5 0 YtkA-like CopC PF04234.7 gi|313117346|ref|YP_004044329.1| - 0.036 14.7 2.8 1.6 9.4 0.1 3.3 3 0 0 3 3 3 0 CopC domain CARDB PF07705.6 gi|313117346|ref|YP_004044329.1| - 0.036 14.1 0.1 0.036 14.1 0.1 3.1 1 1 1 2 2 2 0 CARDB Glypican PF01153.14 gi|313117347|ref|YP_004044330.1| - 1.3 7.5 3.6 1.5 7.3 2.5 1.2 1 0 0 1 1 1 0 Glypican Nop14 PF04147.7 gi|313117347|ref|YP_004044330.1| - 1.3 6.8 4.3 1.2 6.9 3.0 1.1 1 0 0 1 1 1 0 Nop14-like family DUF3244 PF11589.3 gi|313117349|ref|YP_004044332.1| - 4.9e-05 22.9 0.4 0.29 10.8 0.0 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF3244) FAM176 PF14851.1 gi|313117349|ref|YP_004044332.1| - 0.36 10.5 0.0 0.36 10.5 0.0 2.5 2 0 0 2 2 2 0 FAM176 family A2M_N PF01835.14 gi|313117350|ref|YP_004044333.1| - 0.00037 20.6 4.6 0.55 10.5 0.1 4.2 5 0 0 5 5 5 2 MG2 domain DUF4414 PF14377.1 gi|313117351|ref|YP_004044334.1| - 0.017 15.0 0.2 0.031 14.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4414) FtsX PF02687.16 gi|313117352|ref|YP_004044335.1| - 3.7e-17 62.2 33.9 4.9e-09 35.9 5.5 3.8 4 0 0 4 4 4 2 FtsX-like permease family PEGA PF08308.6 gi|313117352|ref|YP_004044335.1| - 0.00093 18.9 8.0 0.007 16.1 0.5 4.1 4 0 0 4 4 4 1 PEGA domain DUF4480 PF13715.1 gi|313117352|ref|YP_004044335.1| - 0.001 19.0 0.3 0.013 15.5 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) CARDB PF07705.6 gi|313117352|ref|YP_004044335.1| - 0.0091 16.0 1.9 0.028 14.4 0.2 2.6 3 0 0 3 3 3 1 CARDB ABC_tran PF00005.22 gi|313117353|ref|YP_004044336.1| - 4.2e-30 104.8 0.0 5.4e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117353|ref|YP_004044336.1| - 1.9e-08 34.5 0.0 0.00016 21.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313117353|ref|YP_004044336.1| - 0.00028 20.9 3.1 0.0032 17.4 2.2 2.5 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|313117353|ref|YP_004044336.1| - 0.0016 18.3 0.1 0.015 15.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|313117353|ref|YP_004044336.1| - 0.002 17.6 0.4 0.0046 16.4 0.3 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313117353|ref|YP_004044336.1| - 0.0056 16.8 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain BPL_C PF02237.12 gi|313117353|ref|YP_004044336.1| - 0.014 15.0 0.2 0.11 12.1 0.1 2.2 2 0 0 2 2 2 0 Biotin protein ligase C terminal domain DUF258 PF03193.11 gi|313117353|ref|YP_004044336.1| - 0.015 14.4 0.1 0.025 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313117353|ref|YP_004044336.1| - 0.015 15.0 0.5 0.044 13.5 0.0 1.9 2 1 0 2 2 2 0 Part of AAA domain SMC_N PF02463.14 gi|313117353|ref|YP_004044336.1| - 0.021 14.0 0.0 0.39 9.8 0.0 2.0 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|313117353|ref|YP_004044336.1| - 0.023 13.5 0.0 0.043 12.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|313117353|ref|YP_004044336.1| - 0.03 14.1 0.2 0.087 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313117353|ref|YP_004044336.1| - 0.051 13.2 0.3 1.2 8.7 0.1 2.3 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|313117353|ref|YP_004044336.1| - 0.12 13.2 0.5 0.42 11.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|313117353|ref|YP_004044336.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313117353|ref|YP_004044336.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Herpes_UL14 PF03580.9 gi|313117353|ref|YP_004044336.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL14-like protein AAA_30 PF13604.1 gi|313117353|ref|YP_004044336.1| - 0.14 11.6 0.2 0.77 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|313117353|ref|YP_004044336.1| - 0.2 10.2 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF457 PF04307.9 gi|313117354|ref|YP_004044337.1| - 5.4e-10 38.8 8.9 6.7e-10 38.5 6.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3307 PF11750.3 gi|313117354|ref|YP_004044337.1| - 0.034 13.8 1.2 0.043 13.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3307) FtsX PF02687.16 gi|313117356|ref|YP_004044339.1| - 6.5e-22 77.5 34.7 3.3e-15 55.9 4.5 3.6 4 0 0 4 4 4 2 FtsX-like permease family Glycos_transf_2 PF00535.21 gi|313117357|ref|YP_004044340.1| - 6.6e-23 81.2 0.0 1e-22 80.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313117357|ref|YP_004044340.1| - 1.6e-06 28.1 0.0 2.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 FBPase_glpX PF03320.8 gi|313117357|ref|YP_004044340.1| - 0.39 9.3 1.5 0.38 9.3 0.1 1.6 2 0 0 2 2 2 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HATPase_c PF02518.21 gi|313117358|ref|YP_004044341.1| - 4e-17 61.9 0.0 7.3e-17 61.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313117358|ref|YP_004044341.1| - 1.4e-13 51.1 0.0 1.3e-12 47.9 0.0 2.4 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|313117358|ref|YP_004044341.1| - 1.8e-13 50.2 1.3 1.8e-13 50.2 0.9 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|313117358|ref|YP_004044341.1| - 4.1e-13 49.3 0.1 1.2e-12 47.7 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.5 gi|313117358|ref|YP_004044341.1| - 5.5e-12 45.6 0.3 5.6e-11 42.4 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|313117358|ref|YP_004044341.1| - 4.5e-10 39.3 0.0 1.2e-09 37.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|313117358|ref|YP_004044341.1| - 6.4e-06 25.8 0.0 3.6e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|313117358|ref|YP_004044341.1| - 0.00014 21.8 0.0 0.0021 18.0 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|313117358|ref|YP_004044341.1| - 0.0005 20.1 0.1 0.011 15.8 0.0 2.6 1 1 1 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|313117358|ref|YP_004044341.1| - 0.049 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NUDIX PF00293.23 gi|313117359|ref|YP_004044342.1| - 3.6e-13 49.3 0.0 4.4e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|313117359|ref|YP_004044342.1| - 0.022 14.1 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 NUDIX domain Epimerase PF01370.16 gi|313117360|ref|YP_004044343.1| - 2.2e-70 236.7 0.0 3e-70 236.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313117360|ref|YP_004044343.1| - 4.4e-27 94.7 0.0 5.1e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313117360|ref|YP_004044343.1| - 5.8e-25 87.5 0.0 7.9e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|313117360|ref|YP_004044343.1| - 1.7e-20 73.1 0.0 3e-19 69.0 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|313117360|ref|YP_004044343.1| - 4.4e-17 61.8 0.0 4e-16 58.6 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|313117360|ref|YP_004044343.1| - 2.1e-10 40.8 0.0 3.4e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313117360|ref|YP_004044343.1| - 3e-07 29.9 0.1 5.1e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|313117360|ref|YP_004044343.1| - 6.9e-05 22.8 0.2 0.00054 19.9 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|313117360|ref|YP_004044343.1| - 0.0079 15.8 0.0 0.025 14.2 0.0 1.8 1 1 0 1 1 1 1 KR domain DapB_N PF01113.15 gi|313117360|ref|YP_004044343.1| - 0.012 15.5 0.6 0.21 11.5 0.1 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|313117360|ref|YP_004044343.1| - 0.024 13.6 0.1 0.035 13.0 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase RmlD_sub_bind PF04321.12 gi|313117361|ref|YP_004044344.1| - 2.5e-71 239.9 0.0 2.8e-71 239.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|313117361|ref|YP_004044344.1| - 4.2e-26 91.8 0.0 5.6e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|313117361|ref|YP_004044344.1| - 3.9e-08 32.5 0.0 6.6e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313117361|ref|YP_004044344.1| - 5.5e-07 28.7 0.2 1.7e-06 27.1 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|313117361|ref|YP_004044344.1| - 7.5e-07 28.1 0.1 1.3e-06 27.3 0.1 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|313117361|ref|YP_004044344.1| - 2.3e-06 27.7 0.0 3.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|313117361|ref|YP_004044344.1| - 0.14 12.0 1.5 0.47 10.3 1.1 1.9 1 1 0 1 1 1 0 short chain dehydrogenase OrfB_Zn_ribbon PF07282.6 gi|313117362|ref|YP_004044345.1| - 0.0049 16.5 1.3 0.0072 15.9 0.9 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|313117362|ref|YP_004044345.1| - 0.011 15.5 0.3 0.016 15.0 0.2 1.4 1 0 0 1 1 1 0 IBR domain zf-ribbon_3 PF13248.1 gi|313117362|ref|YP_004044345.1| - 0.028 13.6 3.2 0.087 12.0 2.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|313117362|ref|YP_004044345.1| - 0.044 13.4 3.6 0.044 13.4 2.5 2.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|313117362|ref|YP_004044345.1| - 0.05 13.4 0.5 0.083 12.7 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|313117362|ref|YP_004044345.1| - 0.051 13.2 5.4 0.12 12.1 3.7 1.6 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|313117362|ref|YP_004044345.1| - 0.058 12.7 0.1 0.058 12.7 0.1 2.0 3 0 0 3 3 3 0 TFIIB zinc-binding RNHCP PF12647.2 gi|313117362|ref|YP_004044345.1| - 0.086 12.6 0.7 0.097 12.5 0.5 1.2 1 0 0 1 1 1 0 RNHCP domain zf-tcix PF14952.1 gi|313117362|ref|YP_004044345.1| - 0.19 11.1 2.4 0.46 9.8 1.6 1.6 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.1 gi|313117362|ref|YP_004044345.1| - 0.21 11.1 1.8 0.54 9.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313117362|ref|YP_004044345.1| - 0.38 10.3 2.0 0.74 9.4 1.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313117362|ref|YP_004044345.1| - 2.8 7.9 4.7 1.5 8.8 0.6 2.1 1 1 2 3 3 3 0 Zinc ribbon domain NTP_transferase PF00483.18 gi|313117363|ref|YP_004044346.1| - 2.1e-56 190.9 0.0 2.6e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313117363|ref|YP_004044346.1| - 4.6e-10 39.7 0.0 7.5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|313117363|ref|YP_004044346.1| - 1.5e-08 33.7 3.7 0.0009 18.6 0.0 3.5 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|313117363|ref|YP_004044346.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dTDP_sugar_isom PF00908.12 gi|313117364|ref|YP_004044347.1| - 5.6e-14 51.8 0.0 7.6e-14 51.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|313117364|ref|YP_004044347.1| - 1.7e-06 27.5 0.0 2.3e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|313117364|ref|YP_004044347.1| - 0.0049 16.3 0.3 0.05 13.1 0.2 2.1 1 1 0 1 1 1 1 Cupin domain Polysacc_synt PF01943.12 gi|313117365|ref|YP_004044348.1| - 1.3e-27 96.7 36.9 9.8e-23 80.7 11.1 2.0 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|313117365|ref|YP_004044348.1| - 6.2e-24 84.4 13.4 6.2e-24 84.4 9.3 3.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|313117365|ref|YP_004044348.1| - 6e-15 55.3 24.0 6e-15 55.3 16.7 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|313117365|ref|YP_004044348.1| - 3.2e-11 43.1 7.4 3.2e-11 43.1 5.1 3.6 3 1 1 4 4 4 1 MatE MVIN PF03023.9 gi|313117365|ref|YP_004044348.1| - 1.6e-10 40.0 11.3 1.6e-10 40.0 7.8 2.2 2 1 0 2 2 2 1 MviN-like protein Sulfatase PF00884.18 gi|313117367|ref|YP_004044350.1| - 7.2e-18 64.8 0.0 9.1e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313117367|ref|YP_004044350.1| - 0.00025 20.4 0.2 0.00071 18.9 0.1 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|313117367|ref|YP_004044350.1| - 0.1 11.0 0.0 0.15 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.21 gi|313117368|ref|YP_004044351.1| - 1.8e-21 76.5 0.1 2.6e-21 76.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313117368|ref|YP_004044351.1| - 5.2e-14 52.6 0.0 9.8e-14 51.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|313117368|ref|YP_004044351.1| - 1.4e-05 24.4 0.1 0.00011 21.5 0.1 2.2 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.4 gi|313117368|ref|YP_004044351.1| - 2.3e-05 23.5 0.0 3.1e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|313117368|ref|YP_004044351.1| - 0.00098 18.8 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|313117368|ref|YP_004044351.1| - 0.035 14.4 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_trans_1_4 PF13692.1 gi|313117369|ref|YP_004044352.1| - 1.7e-15 57.3 0.0 4.8e-15 55.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|313117369|ref|YP_004044352.1| - 4.3e-07 30.1 0.0 1e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|313117369|ref|YP_004044352.1| - 0.0058 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_25 PF13649.1 gi|313117369|ref|YP_004044352.1| - 0.14 12.4 0.0 3.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|313117370|ref|YP_004044353.1| - 1.8e-28 99.1 0.0 3.2e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313117370|ref|YP_004044353.1| - 1.2e-12 48.1 0.0 2.2e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117370|ref|YP_004044353.1| - 3.4e-09 37.0 0.0 5.5e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|313117370|ref|YP_004044353.1| - 2.2e-07 30.7 0.1 3.5e-05 23.6 0.1 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|313117370|ref|YP_004044353.1| - 0.00097 19.3 0.0 0.011 16.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|313117370|ref|YP_004044353.1| - 0.001 18.9 0.2 0.037 13.8 0.1 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Sulfatase PF00884.18 gi|313117371|ref|YP_004044354.1| - 1.4e-14 54.0 2.0 5.4e-13 48.8 1.4 2.2 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313117371|ref|YP_004044354.1| - 0.0019 17.6 5.5 0.25 10.6 3.8 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Glycos_transf_1 PF00534.15 gi|313117372|ref|YP_004044355.1| - 2e-15 56.6 0.1 1.2e-14 54.0 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313117372|ref|YP_004044355.1| - 4e-11 42.9 0.0 5.5e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|313117372|ref|YP_004044355.1| - 4.2e-11 43.1 0.0 1.6e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117372|ref|YP_004044355.1| - 1.6e-06 28.3 0.0 2.3e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|313117372|ref|YP_004044355.1| - 1.5e-05 24.8 0.3 0.00053 19.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|313117372|ref|YP_004044355.1| - 0.00094 19.4 0.1 0.0035 17.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|313117372|ref|YP_004044355.1| - 0.001 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|313117373|ref|YP_004044356.1| - 8.6e-27 93.6 0.0 1.4e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117373|ref|YP_004044356.1| - 7.9e-19 68.3 1.9 7.9e-19 68.3 1.3 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|313117373|ref|YP_004044356.1| - 1.8e-15 57.2 0.4 6.4e-15 55.4 0.1 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313117373|ref|YP_004044356.1| - 1.9e-15 57.0 0.0 5.2e-15 55.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|313117373|ref|YP_004044356.1| - 0.082 13.1 0.1 0.31 11.3 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 NTP_transferase PF00483.18 gi|313117374|ref|YP_004044357.1| - 1.4e-43 149.0 0.0 1.5e-43 148.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313117374|ref|YP_004044357.1| - 1.1e-14 54.8 0.0 1.4e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|313117374|ref|YP_004044357.1| - 0.00025 20.6 0.0 0.0012 18.4 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|313117374|ref|YP_004044357.1| - 0.0081 15.8 0.1 0.014 15.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF1628 PF07790.6 gi|313117375|ref|YP_004044358.1| - 0.27 11.9 0.2 0.27 11.9 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) CENP-T PF15511.1 gi|313117375|ref|YP_004044358.1| - 0.3 10.2 10.0 0.36 10.0 6.9 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Nop14 PF04147.7 gi|313117375|ref|YP_004044358.1| - 8.3 4.1 12.2 11 3.8 8.5 1.0 1 0 0 1 1 1 0 Nop14-like family Peptidase_S8 PF00082.17 gi|313117376|ref|YP_004044359.1| - 2.6e-47 161.3 5.6 2.6e-47 161.3 3.9 3.5 3 0 0 3 3 3 1 Subtilase family Beta_helix PF13229.1 gi|313117376|ref|YP_004044359.1| - 4.1e-14 52.6 14.2 4.1e-14 52.6 9.9 3.7 3 1 1 4 4 4 2 Right handed beta helix region NosD PF05048.8 gi|313117376|ref|YP_004044359.1| - 1.5e-12 47.2 6.1 3.3e-08 32.9 0.8 2.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) DUF4480 PF13715.1 gi|313117376|ref|YP_004044359.1| - 8.3e-09 35.3 1.1 2.5e-08 33.8 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Epimerase PF01370.16 gi|313117377|ref|YP_004044360.1| - 1.6e-42 145.5 0.1 2.1e-42 145.2 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313117377|ref|YP_004044360.1| - 4.3e-15 55.3 0.0 5.5e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313117377|ref|YP_004044360.1| - 1.1e-11 44.0 0.1 4.9e-11 41.8 0.1 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|313117377|ref|YP_004044360.1| - 2.9e-10 39.5 0.0 4.8e-08 32.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313117377|ref|YP_004044360.1| - 1e-09 37.7 0.3 8e-07 28.2 0.0 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313117377|ref|YP_004044360.1| - 1.5e-05 25.0 0.0 1.9e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|313117377|ref|YP_004044360.1| - 0.00017 21.5 0.0 0.22 11.4 0.0 2.5 2 0 0 2 2 2 2 short chain dehydrogenase NmrA PF05368.8 gi|313117377|ref|YP_004044360.1| - 0.078 12.2 0.2 4.8 6.3 0.0 2.4 2 1 0 2 2 2 0 NmrA-like family HalX PF08663.5 gi|313117378|ref|YP_004044361.1| - 1e-15 57.4 5.8 1.8e-15 56.6 4.0 1.4 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|313117378|ref|YP_004044361.1| - 2.7e-15 56.3 0.4 4.4e-15 55.6 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain AIG1 PF04548.11 gi|313117378|ref|YP_004044361.1| - 0.033 13.2 0.7 0.045 12.8 0.5 1.2 1 0 0 1 1 1 0 AIG1 family DUF2762 PF10960.3 gi|313117378|ref|YP_004044361.1| - 0.045 13.4 1.2 0.086 12.5 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2762) Bac_small_YrzI PF09501.5 gi|313117378|ref|YP_004044361.1| - 0.057 13.3 2.1 0.096 12.6 0.6 2.0 2 1 0 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) IF-2B PF01008.12 gi|313117378|ref|YP_004044361.1| - 0.09 11.7 0.5 0.38 9.6 0.0 1.8 2 0 0 2 2 2 0 Initiation factor 2 subunit family TSGA13 PF14994.1 gi|313117379|ref|YP_004044362.1| - 0.067 12.3 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Testis-specific gene 13 protein Utp14 PF04615.8 gi|313117379|ref|YP_004044362.1| - 1.1 7.3 7.4 1.5 6.9 5.1 1.1 1 0 0 1 1 1 0 Utp14 protein DUF4551 PF15087.1 gi|313117379|ref|YP_004044362.1| - 7.1 4.8 7.6 10 4.3 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) DUF3584 PF12128.3 gi|313117380|ref|YP_004044363.1| - 0.0011 16.4 8.3 0.0017 15.8 5.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Apolipoprotein PF01442.13 gi|313117380|ref|YP_004044363.1| - 0.0036 16.8 11.3 0.013 15.0 7.6 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain MitMem_reg PF13012.1 gi|313117380|ref|YP_004044363.1| - 0.0045 17.0 0.7 0.13 12.3 0.1 2.5 1 1 0 2 2 2 1 Maintenance of mitochondrial structure and function Baculo_PEP_C PF04513.7 gi|313117380|ref|YP_004044363.1| - 0.0047 16.7 4.4 0.0047 16.7 3.1 2.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus RmuC PF02646.11 gi|313117380|ref|YP_004044363.1| - 0.01 14.7 8.3 0.12 11.1 3.1 2.2 1 1 1 2 2 2 0 RmuC family Seryl_tRNA_N PF02403.17 gi|313117380|ref|YP_004044363.1| - 0.011 15.7 3.7 0.011 15.7 2.6 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prefoldin_2 PF01920.15 gi|313117380|ref|YP_004044363.1| - 0.028 14.1 14.7 3.4 7.4 0.4 4.1 2 1 2 4 4 4 0 Prefoldin subunit DUF1895 PF08988.5 gi|313117380|ref|YP_004044363.1| - 0.044 13.8 3.0 0.092 12.7 2.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1895) Spc7 PF08317.6 gi|313117380|ref|YP_004044363.1| - 0.058 12.0 12.3 0.14 10.7 8.5 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein Cep57_CLD_2 PF14197.1 gi|313117380|ref|YP_004044363.1| - 0.064 13.2 14.7 0.3 11.0 0.5 3.2 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.4 gi|313117380|ref|YP_004044363.1| - 0.11 12.3 18.3 0.088 12.6 6.0 2.8 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PilJ PF13675.1 gi|313117380|ref|YP_004044363.1| - 0.18 12.1 6.8 2.6 8.4 0.3 3.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Tropomyosin_1 PF12718.2 gi|313117380|ref|YP_004044363.1| - 0.29 10.9 15.7 2.3 8.0 10.2 2.8 1 1 0 1 1 1 0 Tropomyosin like ADIP PF11559.3 gi|313117380|ref|YP_004044363.1| - 0.34 10.7 13.2 1.5 8.6 4.9 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4559 PF15112.1 gi|313117380|ref|YP_004044363.1| - 0.37 9.8 7.5 0.64 9.1 5.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Atg14 PF10186.4 gi|313117380|ref|YP_004044363.1| - 0.57 9.0 8.0 1.7 7.5 5.5 1.8 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|313117380|ref|YP_004044363.1| - 0.71 10.2 13.7 0.75 10.1 1.5 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF972) Snapin_Pallidin PF14712.1 gi|313117380|ref|YP_004044363.1| - 0.74 10.1 12.1 1.4 9.2 2.2 2.9 1 1 1 2 2 2 0 Snapin/Pallidin HemX PF04375.9 gi|313117380|ref|YP_004044363.1| - 0.8 8.2 9.4 4.6 5.7 6.4 2.0 1 1 0 1 1 1 0 HemX Stathmin PF00836.14 gi|313117380|ref|YP_004044363.1| - 0.88 9.2 5.7 0.88 9.2 1.0 2.3 1 1 1 2 2 2 0 Stathmin family V_ATPase_I PF01496.14 gi|313117380|ref|YP_004044363.1| - 0.92 7.2 11.0 3.7 5.2 2.1 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF948 PF06103.6 gi|313117380|ref|YP_004044363.1| - 1.1 9.1 8.7 2.3 8.1 0.4 2.6 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|313117380|ref|YP_004044363.1| - 1.3 8.8 9.9 2.1 8.1 0.4 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|313117380|ref|YP_004044363.1| - 1.4 8.3 12.1 0.26 10.8 2.6 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|313117380|ref|YP_004044363.1| - 1.5 9.1 15.3 39 4.5 0.2 3.7 2 1 2 4 4 3 0 Nucleopolyhedrovirus P10 protein CorA PF01544.13 gi|313117380|ref|YP_004044363.1| - 1.5 7.7 9.1 2.6 6.9 6.1 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein ACCA PF03255.9 gi|313117380|ref|YP_004044363.1| - 1.6 8.2 4.7 0.72 9.3 0.2 2.5 2 1 1 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IncA PF04156.9 gi|313117380|ref|YP_004044363.1| - 2.1 7.9 21.7 13 5.3 14.2 2.4 1 1 0 1 1 1 0 IncA protein Nup54 PF13874.1 gi|313117380|ref|YP_004044363.1| - 2.4 7.8 11.9 0.89 9.2 2.0 2.6 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 BLOC1_2 PF10046.4 gi|313117380|ref|YP_004044363.1| - 2.4 8.3 10.8 11 6.2 0.5 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-Q PF13094.1 gi|313117380|ref|YP_004044363.1| - 2.5 8.0 12.9 8.9 6.3 8.9 1.9 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit APG6 PF04111.7 gi|313117380|ref|YP_004044363.1| - 2.8 6.8 15.0 1 8.3 5.1 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 Occludin_ELL PF07303.8 gi|313117380|ref|YP_004044363.1| - 3.1 8.5 5.0 27 5.5 0.3 2.7 1 1 1 2 2 2 0 Occludin homology domain CASP_C PF08172.7 gi|313117380|ref|YP_004044363.1| - 3.1 6.7 7.9 0.46 9.4 0.5 2.6 2 1 1 3 3 3 0 CASP C terminal COG2 PF06148.6 gi|313117380|ref|YP_004044363.1| - 3.5 7.5 12.3 4.2 7.2 0.4 3.1 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF812 PF05667.6 gi|313117380|ref|YP_004044363.1| - 4.2 5.7 17.2 0.09 11.2 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) CCDC-167 PF15188.1 gi|313117380|ref|YP_004044363.1| - 5.1 7.1 12.0 0.27 11.2 2.1 3.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF4164 PF13747.1 gi|313117380|ref|YP_004044363.1| - 5.9 7.0 13.0 1.4 9.0 3.9 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Psb28 PF03912.9 gi|313117381|ref|YP_004044364.1| - 0.027 14.4 0.3 6.8 6.7 0.0 2.8 2 0 0 2 2 2 0 Psb28 protein Poly_export PF02563.11 gi|313117381|ref|YP_004044364.1| - 0.087 12.6 2.3 1.3 8.8 0.1 3.6 2 1 1 3 3 3 0 Polysaccharide biosynthesis/export protein Sarcoglycan_1 PF04790.8 gi|313117381|ref|YP_004044364.1| - 0.13 11.4 13.3 4.4 6.4 0.1 4.9 2 1 0 4 4 4 0 Sarcoglycan complex subunit protein Peptidase_S24 PF00717.18 gi|313117382|ref|YP_004044365.1| - 2.8e-08 33.2 0.6 6e-08 32.2 0.0 1.8 2 0 0 2 2 2 1 Peptidase S24-like GPI2 PF06432.6 gi|313117382|ref|YP_004044365.1| - 0.081 12.2 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase TrbC PF04956.8 gi|313117382|ref|YP_004044365.1| - 4.6 7.3 23.0 0.062 13.3 2.6 3.6 4 0 0 4 4 4 0 TrbC/VIRB2 family DUF4232 PF14016.1 gi|313117383|ref|YP_004044366.1| - 0.17 11.5 5.8 0.32 10.6 1.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) DUF1214 PF06742.6 gi|313117383|ref|YP_004044366.1| - 4 7.9 5.3 11 6.4 0.1 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF1214) HlyIII PF03006.15 gi|313117386|ref|YP_004044369.1| - 0.0096 15.3 0.2 0.017 14.5 0.1 1.4 1 0 0 1 1 1 1 Haemolysin-III related OapA_N PF08525.6 gi|313117386|ref|YP_004044369.1| - 0.25 11.1 0.9 0.56 10.0 0.6 1.6 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif T2SM PF04612.7 gi|313117387|ref|YP_004044370.1| - 0.015 15.0 0.2 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF4131 PF13567.1 gi|313117387|ref|YP_004044370.1| - 0.077 12.4 0.4 0.17 11.2 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) OppC_N PF12911.2 gi|313117388|ref|YP_004044371.1| - 0.0066 15.7 0.2 0.027 13.8 0.0 2.0 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Apt1 PF10351.4 gi|313117389|ref|YP_004044372.1| - 1.7 7.4 11.7 2.4 6.8 8.1 1.3 1 0 0 1 1 1 0 Golgi-body localisation protein domain NPR3 PF03666.8 gi|313117389|ref|YP_004044372.1| - 6.9 5.0 6.5 12 4.3 4.5 1.2 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 zf-FPG_IleRS PF06827.9 gi|313117390|ref|YP_004044373.1| - 0.00046 19.7 2.2 0.0011 18.5 1.5 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-RING_6 PF14835.1 gi|313117390|ref|YP_004044373.1| - 0.0038 16.9 0.1 0.005 16.6 0.1 1.2 1 0 0 1 1 1 1 zf-RING of BARD1-type protein zf-TFIIB PF13453.1 gi|313117390|ref|YP_004044373.1| - 0.0054 15.8 1.5 0.011 14.8 1.1 1.6 1 0 0 1 1 1 1 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|313117390|ref|YP_004044373.1| - 0.1 12.4 0.8 0.16 11.7 0.6 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|313117390|ref|YP_004044373.1| - 0.14 12.4 0.6 0.24 11.7 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|313117390|ref|YP_004044373.1| - 0.16 11.8 1.7 0.33 10.8 1.2 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) HTH_10 PF04967.7 gi|313117391|ref|YP_004044374.1| - 1.9e-22 78.5 0.0 1e-21 76.2 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.1 gi|313117391|ref|YP_004044374.1| - 1.8e-12 47.9 3.9 2.8e-08 34.3 0.2 2.5 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|313117391|ref|YP_004044374.1| - 6.3e-09 36.0 3.4 1.3e-05 25.2 0.4 2.7 2 0 0 2 2 2 2 GAF domain HTH_1 PF00126.22 gi|313117391|ref|YP_004044374.1| - 2.9e-05 23.7 0.0 0.00012 21.7 0.0 2.1 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|313117391|ref|YP_004044374.1| - 0.00034 19.8 0.0 0.0011 18.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|313117391|ref|YP_004044374.1| - 0.0017 17.6 0.0 0.15 11.3 0.0 3.1 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|313117391|ref|YP_004044374.1| - 0.0018 17.9 0.0 0.0043 16.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AAA_23 PF13476.1 gi|313117393|ref|YP_004044376.1| - 3e-07 30.9 23.7 3e-07 30.9 16.4 4.8 2 2 1 3 3 2 1 AAA domain Seryl_tRNA_N PF02403.17 gi|313117393|ref|YP_004044376.1| - 2.8e-06 27.3 65.0 0.00024 21.1 4.4 5.7 2 2 3 6 6 6 4 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|313117393|ref|YP_004044376.1| - 0.00018 20.7 12.2 0.00018 20.7 8.4 3.8 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|313117393|ref|YP_004044376.1| - 0.0011 17.7 74.2 0.011 14.4 15.5 4.2 2 2 1 3 3 3 2 Spc7 kinetochore protein Atg14 PF10186.4 gi|313117393|ref|YP_004044376.1| - 0.0079 15.1 69.8 0.11 11.4 5.0 4.2 2 2 2 4 4 4 3 UV radiation resistance protein and autophagy-related subunit 14 Snapin_Pallidin PF14712.1 gi|313117393|ref|YP_004044376.1| - 0.011 16.0 48.4 0.013 15.7 3.3 6.2 2 2 5 7 7 7 0 Snapin/Pallidin Reo_sigmaC PF04582.7 gi|313117393|ref|YP_004044376.1| - 0.012 14.8 25.8 0.22 10.6 2.9 4.1 2 1 3 5 5 5 0 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|313117393|ref|YP_004044376.1| - 0.034 12.6 61.7 0.22 9.9 15.0 3.0 1 1 0 2 2 2 0 AAA domain IncA PF04156.9 gi|313117393|ref|YP_004044376.1| - 0.062 12.8 95.0 0.035 13.6 12.8 4.3 2 2 2 4 4 4 0 IncA protein DUF1664 PF07889.7 gi|313117393|ref|YP_004044376.1| - 0.11 12.2 47.0 0.079 12.7 5.1 6.1 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) WEMBL PF05701.6 gi|313117393|ref|YP_004044376.1| - 0.15 10.4 66.9 0.034 12.6 13.7 2.8 2 1 0 2 2 2 0 Weak chloroplast movement under blue light PilJ PF13675.1 gi|313117393|ref|YP_004044376.1| - 0.31 11.3 38.6 0.93 9.8 1.1 4.9 2 2 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term TBPIP PF07106.8 gi|313117393|ref|YP_004044376.1| - 0.38 10.2 68.8 0.2 11.1 10.5 5.9 1 1 7 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_II PF06009.7 gi|313117393|ref|YP_004044376.1| - 0.53 10.0 44.7 0.35 10.6 1.6 4.9 2 2 3 5 5 5 0 Laminin Domain II HsbA PF12296.3 gi|313117393|ref|YP_004044376.1| - 0.63 9.9 6.2 1 9.2 0.0 3.7 3 1 0 3 3 3 0 Hydrophobic surface binding protein A DUF4041 PF13250.1 gi|313117393|ref|YP_004044376.1| - 1.5 8.4 4.7 0.46 10.0 0.1 2.6 3 0 0 3 3 1 0 Domain of unknown function (DUF4041) CENP-F_leu_zip PF10473.4 gi|313117393|ref|YP_004044376.1| - 1.8 8.4 89.4 0.1 12.4 7.0 4.4 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|313117393|ref|YP_004044376.1| - 2.1 5.5 70.3 3.9 4.6 16.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) SMC_N PF02463.14 gi|313117393|ref|YP_004044376.1| - 3.2 6.9 26.6 3.6 6.7 0.0 3.1 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF4201 PF13870.1 gi|313117393|ref|YP_004044376.1| - 3.5 7.0 63.1 3.1 7.2 10.0 4.5 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) NPV_P10 PF05531.7 gi|313117393|ref|YP_004044376.1| - 4.1 7.7 37.7 3 8.1 0.9 6.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Mnd1 PF03962.10 gi|313117393|ref|YP_004044376.1| - 5.1 6.7 70.6 2.5 7.7 15.4 5.0 2 2 1 3 3 3 0 Mnd1 family APG6 PF04111.7 gi|313117393|ref|YP_004044376.1| - 6.1 5.7 77.8 0.33 9.9 24.0 3.8 2 2 1 3 3 3 0 Autophagy protein Apg6 DUF4407 PF14362.1 gi|313117393|ref|YP_004044376.1| - 6.3 5.6 54.1 0.014 14.3 17.3 3.3 1 1 2 3 3 2 0 Domain of unknown function (DUF4407) Cortex-I_coil PF09304.5 gi|313117393|ref|YP_004044376.1| - 9 6.3 78.3 0.089 12.8 10.7 5.7 2 2 3 5 5 5 0 Cortexillin I, coiled coil BLOC1_2 PF10046.4 gi|313117393|ref|YP_004044376.1| - 9.6 6.4 53.5 0.063 13.4 3.9 6.3 2 2 4 7 7 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HalX PF08663.5 gi|313117396|ref|YP_004044379.1| - 3.1e-11 43.0 7.8 4.9e-11 42.4 5.4 1.3 1 0 0 1 1 1 1 HalX domain Erp_C PF06780.6 gi|313117396|ref|YP_004044379.1| - 0.055 13.3 1.5 0.061 13.1 1.0 1.1 1 0 0 1 1 1 0 Erp protein C-terminus TetR_C_2 PF08361.6 gi|313117396|ref|YP_004044379.1| - 0.098 12.5 0.2 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region TBPIP PF07106.8 gi|313117396|ref|YP_004044379.1| - 0.13 11.8 4.0 0.18 11.3 2.8 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bac_small_YrzI PF09501.5 gi|313117396|ref|YP_004044379.1| - 0.14 12.0 0.2 0.14 12.0 0.1 2.3 3 0 0 3 3 3 0 Probable sporulation protein (Bac_small_yrzI) Spc7 PF08317.6 gi|313117396|ref|YP_004044379.1| - 0.33 9.5 7.3 0.38 9.3 5.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein UPF0449 PF15136.1 gi|313117396|ref|YP_004044379.1| - 0.41 10.8 2.5 0.44 10.7 1.2 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 Atg14 PF10186.4 gi|313117396|ref|YP_004044379.1| - 1.9 7.3 8.4 2.1 7.1 5.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|313117396|ref|YP_004044379.1| - 8.1 6.0 7.5 2.7 7.5 0.8 2.4 1 1 1 2 2 2 0 Septum formation initiator Response_reg PF00072.19 gi|313117397|ref|YP_004044380.1| - 1.4e-12 47.6 0.3 1.7e-12 47.3 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain TPP_enzyme_N PF02776.13 gi|313117398|ref|YP_004044381.1| - 0.14 11.6 0.1 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HATPase_c PF02518.21 gi|313117399|ref|YP_004044382.1| - 1.3e-23 82.8 0.0 2.4e-23 81.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313117399|ref|YP_004044382.1| - 8.2e-23 80.5 0.5 1.3e-12 47.7 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|313117399|ref|YP_004044382.1| - 6.1e-16 58.6 0.1 2.6e-08 34.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|313117399|ref|YP_004044382.1| - 1.2e-10 41.1 0.0 1.9e-08 34.0 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|313117399|ref|YP_004044382.1| - 1e-06 28.5 0.0 2.4e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|313117399|ref|YP_004044382.1| - 1e-06 28.3 0.0 2.3e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|313117399|ref|YP_004044382.1| - 2.9e-06 27.1 0.8 2.9e-06 27.1 0.5 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|313117399|ref|YP_004044382.1| - 3.7e-06 26.3 1.5 8.4e-06 25.2 1.0 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|313117399|ref|YP_004044382.1| - 0.024 14.2 0.0 0.084 12.5 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313117399|ref|YP_004044382.1| - 0.083 12.9 0.1 8.9 6.4 0.0 2.6 2 0 0 2 2 2 0 PAS fold PAS_7 PF12860.2 gi|313117399|ref|YP_004044382.1| - 0.17 11.8 2.5 1.1 9.2 0.0 2.9 3 1 0 3 3 2 0 PAS fold DUF883 PF05957.8 gi|313117399|ref|YP_004044382.1| - 0.38 11.1 2.5 23 5.4 0.0 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) AIF-MLS PF14962.1 gi|313117399|ref|YP_004044382.1| - 0.84 9.2 7.7 0.079 12.5 2.1 1.7 2 0 0 2 2 2 0 Mitochondria Localisation Sequence p450 PF00067.17 gi|313117400|ref|YP_004044383.1| - 6.1e-91 305.2 0.0 6.8e-91 305.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Pr_beta_C PF12465.3 gi|313117400|ref|YP_004044383.1| - 0.021 14.0 0.0 0.05 12.8 0.0 1.7 1 0 0 1 1 1 0 Proteasome beta subunits C terminal HTH_10 PF04967.7 gi|313117401|ref|YP_004044384.1| - 1.8e-18 65.8 0.0 3.4e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313117401|ref|YP_004044384.1| - 0.0052 16.2 0.1 0.29 10.6 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|313117401|ref|YP_004044384.1| - 0.022 14.5 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313117401|ref|YP_004044384.1| - 0.028 13.7 0.1 0.17 11.2 0.0 2.2 2 1 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.14 gi|313117401|ref|YP_004044384.1| - 0.031 13.5 0.1 0.9 8.9 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|313117401|ref|YP_004044384.1| - 0.033 13.8 0.1 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.1 gi|313117401|ref|YP_004044384.1| - 0.071 12.7 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|313117401|ref|YP_004044384.1| - 0.097 12.2 0.0 0.32 10.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TroA PF01297.12 gi|313117402|ref|YP_004044385.1| - 7.6e-45 153.1 0.1 9.8e-45 152.7 0.1 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|313117403|ref|YP_004044386.1| - 4e-31 108.1 0.0 5.4e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117403|ref|YP_004044386.1| - 2.5e-12 47.3 0.0 4.9e-06 26.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313117403|ref|YP_004044386.1| - 1.9e-05 24.1 0.1 4e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117403|ref|YP_004044386.1| - 3.1e-05 23.3 0.4 0.0012 18.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|313117403|ref|YP_004044386.1| - 0.00029 19.5 0.3 0.17 10.3 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|313117403|ref|YP_004044386.1| - 0.00043 19.8 0.6 0.00097 18.6 0.4 1.8 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|313117403|ref|YP_004044386.1| - 0.00051 20.1 0.2 0.068 13.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|313117403|ref|YP_004044386.1| - 0.0024 17.7 0.4 0.04 13.8 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|313117403|ref|YP_004044386.1| - 0.0033 17.3 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|313117403|ref|YP_004044386.1| - 0.0037 17.6 0.0 0.0053 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117403|ref|YP_004044386.1| - 0.004 17.1 0.3 0.011 15.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|313117403|ref|YP_004044386.1| - 0.0063 17.3 0.6 0.16 12.7 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|313117403|ref|YP_004044386.1| - 0.013 15.0 0.0 0.04 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|313117403|ref|YP_004044386.1| - 0.015 14.9 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|313117403|ref|YP_004044386.1| - 0.02 13.6 0.0 0.027 13.2 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|313117403|ref|YP_004044386.1| - 0.031 14.1 0.1 0.055 13.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|313117403|ref|YP_004044386.1| - 0.036 13.4 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_19 PF13245.1 gi|313117403|ref|YP_004044386.1| - 0.054 13.2 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|313117403|ref|YP_004044386.1| - 0.072 12.2 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|313117403|ref|YP_004044386.1| - 0.072 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF87 PF01935.12 gi|313117403|ref|YP_004044386.1| - 0.073 12.8 0.2 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 NTPase_1 PF03266.10 gi|313117403|ref|YP_004044386.1| - 0.087 12.5 0.0 0.34 10.6 0.0 1.9 1 1 0 1 1 1 0 NTPase NACHT PF05729.7 gi|313117403|ref|YP_004044386.1| - 0.088 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|313117403|ref|YP_004044386.1| - 0.1 12.0 0.1 0.34 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Septin PF00735.13 gi|313117403|ref|YP_004044386.1| - 0.13 11.2 0.0 13 4.6 0.0 2.1 2 0 0 2 2 2 0 Septin ABC-3 PF00950.12 gi|313117404|ref|YP_004044387.1| - 1.7e-56 191.3 40.4 2e-56 191.1 28.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|313117404|ref|YP_004044387.1| - 0.00049 19.0 36.4 0.00049 19.0 25.2 1.9 1 1 0 2 2 2 1 FecCD transport family DUF2407_C PF13373.1 gi|313117404|ref|YP_004044387.1| - 0.17 11.8 0.9 0.46 10.3 0.6 1.7 1 0 0 1 1 1 0 DUF2407 C-terminal domain Fe_dep_repr_C PF02742.10 gi|313117405|ref|YP_004044388.1| - 1.3e-19 69.6 0.3 2.7e-19 68.6 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|313117405|ref|YP_004044388.1| - 8.5e-17 60.8 0.1 1.7e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|313117405|ref|YP_004044388.1| - 4.8e-12 45.3 0.1 6.2e-10 38.6 0.0 2.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|313117405|ref|YP_004044388.1| - 8.4e-09 35.0 0.3 3e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|313117405|ref|YP_004044388.1| - 1.3e-08 34.4 0.5 3e-08 33.3 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain FeoA PF04023.9 gi|313117405|ref|YP_004044388.1| - 1.6e-08 34.3 0.1 3.5e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 FeoA domain HTH_24 PF13412.1 gi|313117405|ref|YP_004044388.1| - 4e-08 32.5 0.1 8.3e-08 31.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|313117405|ref|YP_004044388.1| - 5.8e-08 32.2 6.2 2e-07 30.4 0.1 3.3 4 0 0 4 4 4 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313117405|ref|YP_004044388.1| - 8.6e-08 31.8 0.1 4.7e-06 26.3 0.0 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|313117405|ref|YP_004044388.1| - 5.9e-06 25.8 0.1 3.3e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|313117405|ref|YP_004044388.1| - 7.4e-06 25.5 0.1 1.2e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|313117405|ref|YP_004044388.1| - 1.5e-05 25.2 0.1 4.7e-05 23.6 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain Crp PF00325.15 gi|313117405|ref|YP_004044388.1| - 2.3e-05 23.7 0.8 7.3e-05 22.1 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.11 gi|313117405|ref|YP_004044388.1| - 8.3e-05 21.8 0.1 0.27 10.5 0.0 2.9 3 0 0 3 3 3 2 Sigma-70, region 4 Rrf2 PF02082.15 gi|313117405|ref|YP_004044388.1| - 8.6e-05 22.5 0.1 0.00051 20.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.16 gi|313117405|ref|YP_004044388.1| - 0.00034 19.9 0.1 0.00065 19.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|313117405|ref|YP_004044388.1| - 0.00034 20.1 0.0 0.0011 18.5 0.0 2.0 2 0 0 2 2 1 1 Homeodomain-like domain HTH_CodY PF08222.6 gi|313117405|ref|YP_004044388.1| - 0.00063 19.0 0.3 0.0015 17.8 0.1 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|313117405|ref|YP_004044388.1| - 0.00087 18.7 0.1 0.0026 17.2 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.1 gi|313117405|ref|YP_004044388.1| - 0.0017 18.4 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313117405|ref|YP_004044388.1| - 0.0019 17.8 0.0 0.0056 16.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|313117405|ref|YP_004044388.1| - 0.0034 17.0 0.0 0.009 15.6 0.0 1.7 2 0 0 2 2 1 1 FeoC like transcriptional regulator Put_DNA-bind_N PF06971.8 gi|313117405|ref|YP_004044388.1| - 0.0064 16.2 0.1 0.018 14.8 0.1 1.7 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_38 PF13936.1 gi|313117405|ref|YP_004044388.1| - 0.008 15.7 0.4 0.042 13.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain FaeA PF04703.7 gi|313117405|ref|YP_004044388.1| - 0.012 15.6 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.12 gi|313117405|ref|YP_004044388.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2250 PF10007.4 gi|313117405|ref|YP_004044388.1| - 0.021 14.7 0.0 0.043 13.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r3 PF04539.11 gi|313117405|ref|YP_004044388.1| - 0.022 14.6 0.5 0.078 12.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 TetR_N PF00440.18 gi|313117405|ref|YP_004044388.1| - 0.025 14.2 0.2 0.72 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF4423 PF14394.1 gi|313117405|ref|YP_004044388.1| - 0.03 13.8 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|313117405|ref|YP_004044388.1| - 0.031 14.4 0.0 0.053 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|313117405|ref|YP_004044388.1| - 0.034 13.6 0.0 0.14 11.7 0.0 2.1 2 0 0 2 2 1 0 LexA DNA binding domain EAP30 PF04157.11 gi|313117405|ref|YP_004044388.1| - 0.044 12.9 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_34 PF13601.1 gi|313117405|ref|YP_004044388.1| - 0.049 13.6 0.0 0.098 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|313117405|ref|YP_004044388.1| - 0.067 13.0 0.0 0.59 10.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix Phage_rep_O PF04492.8 gi|313117405|ref|YP_004044388.1| - 0.07 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O LacI PF00356.16 gi|313117405|ref|YP_004044388.1| - 0.082 12.5 0.6 0.19 11.3 0.1 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.7 gi|313117405|ref|YP_004044388.1| - 0.09 12.2 0.0 0.41 10.1 0.0 2.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|313117405|ref|YP_004044388.1| - 0.14 11.7 0.1 0.55 9.8 0.0 2.1 2 0 0 2 2 1 0 HTH DNA binding domain HTH_28 PF13518.1 gi|313117405|ref|YP_004044388.1| - 0.15 12.1 0.0 0.53 10.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Apo-CIII PF05778.7 gi|313117405|ref|YP_004044388.1| - 0.15 11.4 0.1 0.47 9.8 0.0 1.9 2 0 0 2 2 1 0 Apolipoprotein CIII (Apo-CIII) Topoisom_bac PF01131.15 gi|313117405|ref|YP_004044388.1| - 0.16 10.8 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase PgpA PF04608.8 gi|313117406|ref|YP_004044389.1| - 2.7e-29 101.7 1.6 3.1e-29 101.6 1.1 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A ABC_tran PF00005.22 gi|313117407|ref|YP_004044390.1| - 6.3e-31 107.5 0.0 1.2e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117407|ref|YP_004044390.1| - 2.3e-08 34.3 0.1 0.0038 17.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|313117407|ref|YP_004044390.1| - 4.7e-06 26.8 0.4 7.4e-05 22.9 0.1 2.6 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|313117407|ref|YP_004044390.1| - 1.6e-05 24.9 0.1 0.0003 20.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|313117407|ref|YP_004044390.1| - 0.0012 18.5 1.2 0.025 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|313117407|ref|YP_004044390.1| - 0.0028 17.7 0.3 0.011 15.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313117407|ref|YP_004044390.1| - 0.0047 16.1 0.0 0.0086 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|313117407|ref|YP_004044390.1| - 0.008 16.0 0.6 0.025 14.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313117407|ref|YP_004044390.1| - 0.011 16.5 0.4 0.04 14.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313117407|ref|YP_004044390.1| - 0.012 15.0 0.2 0.078 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|313117407|ref|YP_004044390.1| - 0.015 14.8 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|313117407|ref|YP_004044390.1| - 0.015 14.6 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|313117407|ref|YP_004044390.1| - 0.022 13.6 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|313117407|ref|YP_004044390.1| - 0.024 14.5 0.1 0.11 12.4 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|313117407|ref|YP_004044390.1| - 0.028 14.3 0.8 0.091 12.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|313117407|ref|YP_004044390.1| - 0.028 13.0 0.1 0.083 11.4 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|313117407|ref|YP_004044390.1| - 0.033 14.1 0.3 0.49 10.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|313117407|ref|YP_004044390.1| - 0.033 14.1 0.0 0.068 13.1 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|313117407|ref|YP_004044390.1| - 0.041 13.5 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.1 gi|313117407|ref|YP_004044390.1| - 0.042 12.9 0.0 0.4 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|313117407|ref|YP_004044390.1| - 0.048 13.3 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase UPF0079 PF02367.12 gi|313117407|ref|YP_004044390.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|313117407|ref|YP_004044390.1| - 0.064 12.9 0.2 0.24 11.0 0.0 2.0 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|313117407|ref|YP_004044390.1| - 0.068 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|313117407|ref|YP_004044390.1| - 0.077 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|313117407|ref|YP_004044390.1| - 0.084 12.3 0.1 0.082 12.3 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.16 gi|313117407|ref|YP_004044390.1| - 0.085 12.0 0.0 0.19 10.8 0.0 1.5 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|313117407|ref|YP_004044390.1| - 0.088 13.1 0.1 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|313117407|ref|YP_004044390.1| - 0.089 12.0 0.0 5.6 6.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|313117407|ref|YP_004044390.1| - 0.1 11.2 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|313117407|ref|YP_004044390.1| - 0.21 11.3 1.2 0.71 9.6 0.2 2.3 2 1 1 3 3 3 0 Part of AAA domain BPD_transp_1 PF00528.17 gi|313117408|ref|YP_004044391.1| - 8.9e-16 57.9 11.0 8.9e-16 57.9 7.6 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component YbjM PF11045.3 gi|313117408|ref|YP_004044391.1| - 0.13 12.0 5.1 5 6.9 0.1 2.6 2 1 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae Oleosin PF01277.12 gi|313117408|ref|YP_004044391.1| - 1.5 8.4 5.8 0.27 10.8 1.3 1.8 2 0 0 2 2 2 0 Oleosin NMT1_2 PF13379.1 gi|313117409|ref|YP_004044392.1| - 4.4e-39 134.3 0.9 7.9e-39 133.5 0.2 1.6 2 0 0 2 2 2 1 NMT1-like family Phosphonate-bd PF12974.2 gi|313117409|ref|YP_004044392.1| - 0.015 14.6 0.1 0.03 13.7 0.1 1.5 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DS PF01916.12 gi|313117410|ref|YP_004044393.1| - 4.8e-99 331.2 0.0 5.5e-99 331.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ABC_tran PF00005.22 gi|313117411|ref|YP_004044394.1| - 1.2e-29 103.3 0.0 2.7e-29 102.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313117411|ref|YP_004044394.1| - 7.5e-13 49.0 1.5 3.2e-07 30.6 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|313117411|ref|YP_004044394.1| - 0.0011 18.4 0.3 0.0025 17.3 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313117411|ref|YP_004044394.1| - 0.0022 18.3 0.6 0.0035 17.6 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313117411|ref|YP_004044394.1| - 0.0053 15.8 0.0 5.6 5.8 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.1 gi|313117411|ref|YP_004044394.1| - 0.0076 16.2 0.3 0.016 15.2 0.1 1.8 1 1 1 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|313117411|ref|YP_004044394.1| - 0.013 14.6 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|313117411|ref|YP_004044394.1| - 0.026 14.7 0.0 0.12 12.5 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313117411|ref|YP_004044394.1| - 0.029 14.4 2.7 0.12 12.5 0.7 2.4 2 1 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|313117411|ref|YP_004044394.1| - 0.035 13.7 0.1 0.086 12.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|313117411|ref|YP_004044394.1| - 0.041 13.6 0.2 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.1 gi|313117411|ref|YP_004044394.1| - 0.049 13.3 0.1 0.12 12.1 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain SMC_N PF02463.14 gi|313117411|ref|YP_004044394.1| - 0.066 12.4 0.4 0.26 10.4 0.3 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|313117411|ref|YP_004044394.1| - 0.069 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|313117411|ref|YP_004044394.1| - 0.076 12.9 0.5 2.9 7.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|313117411|ref|YP_004044394.1| - 0.094 12.5 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313117411|ref|YP_004044394.1| - 0.12 11.9 0.1 0.29 10.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313117411|ref|YP_004044394.1| - 0.19 12.5 2.3 2.5 8.9 1.6 2.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|313117411|ref|YP_004044394.1| - 0.37 10.1 4.2 2 7.8 1.6 2.8 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|313117411|ref|YP_004044394.1| - 0.37 10.1 2.5 1.8 7.9 1.7 1.9 1 1 0 1 1 1 0 AAA-like domain ABC2_membrane_3 PF12698.2 gi|313117412|ref|YP_004044395.1| - 4e-05 22.8 29.1 0.0003 19.9 20.2 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313117412|ref|YP_004044395.1| - 0.73 8.6 22.9 3.2 6.5 15.8 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein PAS_3 PF08447.6 gi|313117413|ref|YP_004044396.1| - 1.5e-31 108.3 2.1 1.2e-18 67.0 0.2 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|313117413|ref|YP_004044396.1| - 9.3e-21 73.6 0.1 2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313117413|ref|YP_004044396.1| - 4.4e-19 68.7 1.9 5.8e-08 33.0 0.0 3.8 4 0 0 4 4 4 3 PAS domain HisKA PF00512.20 gi|313117413|ref|YP_004044396.1| - 7.3e-15 54.7 1.5 2.4e-14 53.0 0.0 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|313117413|ref|YP_004044396.1| - 1.2e-13 51.0 5.2 9.5e-06 25.6 0.2 3.7 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.1 gi|313117413|ref|YP_004044396.1| - 6.9e-08 33.1 0.3 1.9e-07 31.7 0.2 1.8 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|313117413|ref|YP_004044396.1| - 6.1e-06 25.9 3.4 0.0058 16.3 0.1 3.3 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|313117413|ref|YP_004044396.1| - 1.6e-05 24.5 0.0 0.0058 16.4 0.0 3.1 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|313117413|ref|YP_004044396.1| - 0.00012 21.7 0.0 0.00033 20.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|313117413|ref|YP_004044396.1| - 0.00038 20.5 0.1 0.001 19.1 0.0 1.8 2 0 0 2 2 1 1 GAF domain PAS_7 PF12860.2 gi|313117413|ref|YP_004044396.1| - 0.0018 18.2 1.9 0.035 14.1 0.0 3.1 3 0 0 3 3 3 1 PAS fold DUF2930 PF11152.3 gi|313117413|ref|YP_004044396.1| - 0.0071 15.5 0.0 0.018 14.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2930) Retrotrans_gag PF03732.12 gi|313117413|ref|YP_004044396.1| - 0.0078 16.2 1.4 0.86 9.7 0.1 2.9 3 0 0 3 3 3 1 Retrotransposon gag protein PAS_4 PF08448.5 gi|313117414|ref|YP_004044397.1| - 6.8e-30 103.3 6.0 4e-14 52.5 0.1 4.0 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|313117414|ref|YP_004044397.1| - 8.8e-19 67.8 0.1 2.3e-08 34.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|313117414|ref|YP_004044397.1| - 5.7e-15 55.2 0.3 1.1e-14 54.3 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|313117414|ref|YP_004044397.1| - 2.1e-14 53.2 0.5 5.3e-06 26.1 0.0 3.7 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|313117414|ref|YP_004044397.1| - 2.4e-12 46.2 0.2 0.00024 20.8 0.0 4.2 4 1 1 5 5 5 2 PAS domain GAF_3 PF13492.1 gi|313117414|ref|YP_004044397.1| - 1.3e-11 44.7 0.1 1.4e-10 41.3 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|313117414|ref|YP_004044397.1| - 3.8e-05 24.2 1.8 9.3e-05 22.9 0.2 2.4 3 0 0 3 3 3 1 GAF domain OKR_DC_1_N PF03709.10 gi|313117414|ref|YP_004044397.1| - 9.6e-05 22.4 0.4 0.00097 19.1 0.2 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.2 gi|313117414|ref|YP_004044397.1| - 0.072 13.0 0.2 3.1 7.8 0.0 3.3 2 2 0 2 2 2 0 PAS fold GAF_2 PF13185.1 gi|313117416|ref|YP_004044399.1| - 3.9e-26 92.3 3.0 3e-17 63.4 0.0 3.4 3 1 1 4 4 4 2 GAF domain PAS_9 PF13426.1 gi|313117416|ref|YP_004044399.1| - 4.7e-23 81.5 0.1 1.7e-13 50.8 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|313117416|ref|YP_004044399.1| - 2.4e-22 79.7 0.2 4e-13 49.7 0.1 2.9 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|313117416|ref|YP_004044399.1| - 3e-21 74.7 0.0 9.3e-21 73.1 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|313117416|ref|YP_004044399.1| - 4.1e-21 75.0 1.3 9.2e-10 38.5 0.3 3.0 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|313117416|ref|YP_004044399.1| - 4.3e-20 71.5 0.1 8e-11 41.7 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|313117416|ref|YP_004044399.1| - 2.1e-14 53.7 0.0 6.6e-06 26.2 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|313117416|ref|YP_004044399.1| - 1.9e-09 37.5 0.0 4.8e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|313117416|ref|YP_004044399.1| - 2.5e-09 36.6 0.0 1.7e-05 24.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|313117416|ref|YP_004044399.1| - 3.9e-05 23.6 4.0 0.044 13.7 0.0 3.4 4 0 0 4 4 3 2 PAS fold HTH_20 PF12840.2 gi|313117416|ref|YP_004044399.1| - 0.00038 20.1 0.1 0.019 14.7 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|313117416|ref|YP_004044399.1| - 0.0088 15.7 0.0 0.063 12.9 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|313117416|ref|YP_004044399.1| - 0.012 15.0 0.0 1.1 8.7 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|313117416|ref|YP_004044399.1| - 0.016 14.9 0.0 0.48 10.2 0.0 3.1 3 0 0 3 3 3 0 HTH domain HTH_IclR PF09339.5 gi|313117416|ref|YP_004044399.1| - 0.029 13.9 0.6 0.35 10.5 0.2 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain TetR_N PF00440.18 gi|313117416|ref|YP_004044399.1| - 0.1 12.2 0.0 3.1 7.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family MarR_2 PF12802.2 gi|313117416|ref|YP_004044399.1| - 0.23 11.1 4.1 4 7.1 0.0 3.2 3 1 0 3 3 2 0 MarR family CbiA PF01656.18 gi|313117418|ref|YP_004044401.1| - 3.1e-18 65.9 0.0 4.3e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313117418|ref|YP_004044401.1| - 3.1e-08 33.7 0.0 7.2e-08 32.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|313117418|ref|YP_004044401.1| - 5.4e-07 28.9 0.0 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|313117418|ref|YP_004044401.1| - 0.00097 18.2 0.0 0.023 13.7 0.0 2.2 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|313117418|ref|YP_004044401.1| - 0.0091 15.2 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|313117418|ref|YP_004044401.1| - 0.0092 15.4 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|313117418|ref|YP_004044401.1| - 0.013 14.9 0.0 0.48 9.8 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain YhjQ PF06564.7 gi|313117418|ref|YP_004044401.1| - 0.025 13.9 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein AAA_19 PF13245.1 gi|313117418|ref|YP_004044401.1| - 0.041 13.6 0.2 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain HD PF01966.17 gi|313117420|ref|YP_004044403.1| - 7.1e-11 42.1 0.9 1.2e-10 41.4 0.6 1.3 1 0 0 1 1 1 1 HD domain DUF4064 PF13273.1 gi|313117421|ref|YP_004044404.1| - 0.0003 20.8 1.7 0.00035 20.6 0.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4064) Tetraspannin PF00335.15 gi|313117421|ref|YP_004044404.1| - 1.3 8.2 6.5 2.1 7.5 4.5 1.4 1 1 0 1 1 1 0 Tetraspanin family NMT1_2 PF13379.1 gi|313117422|ref|YP_004044405.1| - 1.7e-24 86.5 0.0 2.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|313117422|ref|YP_004044405.1| - 3.2e-06 26.9 0.0 6.1e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|313117422|ref|YP_004044405.1| - 0.00028 20.3 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|313117423|ref|YP_004044406.1| - 3.4e-21 75.6 7.6 4.3e-21 75.2 5.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|313117424|ref|YP_004044407.1| - 5.2e-32 111.0 0.0 7.7e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117424|ref|YP_004044407.1| - 5.8e-07 29.7 0.0 0.006 16.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313117424|ref|YP_004044407.1| - 3.7e-05 23.7 0.0 7.3e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|313117424|ref|YP_004044407.1| - 0.00077 19.6 0.1 0.0055 16.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|313117424|ref|YP_004044407.1| - 0.0016 17.6 0.1 0.0026 16.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|313117424|ref|YP_004044407.1| - 0.0037 17.3 0.3 0.0071 16.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313117424|ref|YP_004044407.1| - 0.0037 17.1 0.2 0.0071 16.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313117424|ref|YP_004044407.1| - 0.011 16.5 0.0 0.02 15.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|313117424|ref|YP_004044407.1| - 0.012 15.5 0.4 0.19 11.6 0.0 2.4 3 0 0 3 3 2 0 AAA domain AAA_15 PF13175.1 gi|313117424|ref|YP_004044407.1| - 0.019 14.0 0.0 0.31 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|313117424|ref|YP_004044407.1| - 0.019 14.6 0.3 0.053 13.2 0.2 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|313117424|ref|YP_004044407.1| - 0.027 13.8 0.1 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|313117424|ref|YP_004044407.1| - 0.028 14.3 0.0 0.076 12.9 0.0 1.8 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|313117424|ref|YP_004044407.1| - 0.034 13.8 0.6 0.31 10.8 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_29 PF13555.1 gi|313117424|ref|YP_004044407.1| - 0.039 13.4 0.3 0.086 12.3 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|313117424|ref|YP_004044407.1| - 0.048 13.3 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|313117424|ref|YP_004044407.1| - 0.057 12.2 0.1 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.14 gi|313117424|ref|YP_004044407.1| - 0.064 12.4 0.1 3.5 6.8 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.1 gi|313117424|ref|YP_004044407.1| - 0.081 12.4 0.1 0.84 9.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|313117424|ref|YP_004044407.1| - 0.086 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|313117424|ref|YP_004044407.1| - 0.098 12.2 0.1 0.57 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|313117424|ref|YP_004044407.1| - 0.11 12.3 0.1 0.33 10.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|313117424|ref|YP_004044407.1| - 0.13 11.9 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|313117424|ref|YP_004044407.1| - 0.15 11.1 0.1 0.29 10.2 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|313117424|ref|YP_004044407.1| - 0.2 11.9 0.2 0.34 11.2 0.2 1.3 1 0 0 1 1 1 0 AAA domain AMP-binding PF00501.23 gi|313117425|ref|YP_004044408.1| - 7.1e-93 311.2 0.1 9e-93 310.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313117425|ref|YP_004044408.1| - 5.2e-17 62.5 0.4 5.2e-17 62.5 0.3 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Aconitase PF00330.15 gi|313117426|ref|YP_004044409.1| - 4.4e-135 450.7 0.0 7.4e-93 311.5 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|313117426|ref|YP_004044409.1| - 3e-40 137.3 0.0 5.2e-40 136.5 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF2244 PF10003.4 gi|313117428|ref|YP_004044411.1| - 1.5 8.2 9.8 3.2 7.1 1.4 2.7 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) PAS_4 PF08448.5 gi|313117429|ref|YP_004044412.1| - 1.1e-38 131.6 8.6 1.9e-15 56.8 0.2 5.0 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|313117429|ref|YP_004044412.1| - 1.1e-35 122.1 0.9 3.5e-15 56.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|313117429|ref|YP_004044412.1| - 2.6e-35 120.6 2.8 8.1e-17 61.0 0.0 3.8 3 0 0 3 3 3 3 PAS fold GAF_3 PF13492.1 gi|313117429|ref|YP_004044412.1| - 8.2e-20 71.2 0.1 1.7e-09 37.8 0.0 3.9 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.21 gi|313117429|ref|YP_004044412.1| - 8.8e-20 70.4 0.5 1.8e-19 69.4 0.3 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|313117429|ref|YP_004044412.1| - 6.2e-19 67.1 0.1 2.5e-06 27.1 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|313117429|ref|YP_004044412.1| - 1.4e-18 67.8 0.6 7.7e-08 32.9 0.0 3.8 2 1 1 3 3 3 2 GAF domain Response_reg PF00072.19 gi|313117429|ref|YP_004044412.1| - 7.5e-13 48.4 0.3 7.5e-13 48.4 0.2 2.9 3 0 0 3 3 3 1 Response regulator receiver domain HisKA PF00512.20 gi|313117429|ref|YP_004044412.1| - 1.9e-12 46.9 0.2 1.9e-12 46.9 0.1 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|313117429|ref|YP_004044412.1| - 1.4e-10 41.4 0.1 0.002 18.2 0.0 3.6 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.6 gi|313117429|ref|YP_004044412.1| - 0.00011 22.2 0.1 0.00078 19.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.10 gi|313117429|ref|YP_004044412.1| - 0.00061 19.8 0.5 0.0035 17.3 0.3 2.4 1 1 1 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|313117429|ref|YP_004044412.1| - 0.0018 17.9 0.0 0.0047 16.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|313117429|ref|YP_004044412.1| - 0.002 18.1 2.8 0.37 10.8 0.0 5.1 4 3 0 4 4 4 1 PAS fold PAS_10 PF13596.1 gi|313117429|ref|YP_004044412.1| - 0.004 17.4 0.0 0.18 12.1 0.0 3.5 4 0 0 4 4 4 1 PAS domain Na_H_antiporter PF03553.9 gi|313117430|ref|YP_004044413.1| - 4.2e-65 219.7 26.7 7.5e-63 212.3 4.1 2.5 1 1 2 3 3 3 2 Na+/H+ antiporter family TAT_signal PF10518.4 gi|313117431|ref|YP_004044414.1| - 0.024 14.6 0.5 0.031 14.2 0.4 1.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SDA1 PF05285.7 gi|313117431|ref|YP_004044414.1| - 0.059 12.6 5.5 0.057 12.7 3.8 1.0 1 0 0 1 1 1 0 SDA1 Trypan_PARP PF05887.6 gi|313117431|ref|YP_004044414.1| - 0.15 11.8 7.1 0.18 11.6 4.9 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) TRAP_alpha PF03896.11 gi|313117431|ref|YP_004044414.1| - 0.23 10.4 1.6 0.24 10.3 1.1 1.0 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Prothymosin PF03247.9 gi|313117431|ref|YP_004044414.1| - 4 7.6 22.2 5.5 7.1 15.4 1.1 1 0 0 1 1 1 0 Prothymosin/parathymosin family Sigma70_ner PF04546.8 gi|313117431|ref|YP_004044414.1| - 6.6 6.2 8.1 8.4 5.9 5.6 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region Daxx PF03344.10 gi|313117431|ref|YP_004044414.1| - 7.1 4.9 11.0 8.1 4.7 7.6 1.0 1 0 0 1 1 1 0 Daxx Family Nop14 PF04147.7 gi|313117431|ref|YP_004044414.1| - 8.4 4.1 11.9 9.5 3.9 8.3 1.0 1 0 0 1 1 1 0 Nop14-like family adh_short PF00106.20 gi|313117432|ref|YP_004044415.1| - 9.2e-22 77.7 3.7 1.2e-21 77.3 2.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313117432|ref|YP_004044415.1| - 2.2e-07 30.8 0.1 2.8e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313117432|ref|YP_004044415.1| - 2.6e-06 27.2 3.3 5.8e-06 26.0 2.3 1.5 1 1 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|313117432|ref|YP_004044415.1| - 9.8e-05 22.0 0.4 0.00062 19.4 0.2 2.1 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|313117432|ref|YP_004044415.1| - 0.0018 17.7 0.2 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Patatin PF01734.17 gi|313117433|ref|YP_004044416.1| - 2.6e-15 56.8 2.9 5.8e-14 52.4 2.0 2.2 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.9 gi|313117434|ref|YP_004044417.1| - 3.2e-34 118.5 1.5 5.7e-34 117.7 1.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|313117434|ref|YP_004044417.1| - 4.2e-28 97.5 1.0 8.9e-28 96.5 0.7 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|313117434|ref|YP_004044417.1| - 2.9e-16 59.6 6.9 4.9e-15 55.6 0.2 3.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313117434|ref|YP_004044417.1| - 2.5e-12 47.2 0.1 7.9e-10 39.1 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|313117434|ref|YP_004044417.1| - 4.6e-07 29.0 0.0 0.00091 18.2 0.0 2.3 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|313117434|ref|YP_004044417.1| - 2.9e-06 26.4 5.4 9.5e-06 24.7 2.9 2.3 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313117434|ref|YP_004044417.1| - 4.5e-05 22.7 1.3 0.0001 21.5 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313117434|ref|YP_004044417.1| - 0.0054 15.6 2.1 0.0054 15.6 1.5 2.2 1 1 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|313117434|ref|YP_004044417.1| - 0.023 13.6 15.2 0.27 10.0 0.9 3.8 3 1 0 4 4 4 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|313117434|ref|YP_004044417.1| - 0.036 13.6 1.8 3.5 7.2 0.1 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|313117434|ref|YP_004044417.1| - 0.046 14.0 0.2 0.33 11.2 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain HI0933_like PF03486.9 gi|313117434|ref|YP_004044417.1| - 0.052 12.0 0.8 9.6 4.5 0.2 3.0 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_8 PF13450.1 gi|313117434|ref|YP_004044417.1| - 1.7 8.7 5.0 12 6.0 0.1 3.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain MarR_2 PF12802.2 gi|313117435|ref|YP_004044418.1| - 7.3e-10 38.3 0.0 1.9e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313117435|ref|YP_004044418.1| - 1.4e-08 34.2 0.0 5.5e-08 32.2 0.0 2.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313117435|ref|YP_004044418.1| - 5e-07 29.3 0.0 8.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313117435|ref|YP_004044418.1| - 5.2e-07 29.3 0.0 9.9e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313117435|ref|YP_004044418.1| - 3.1e-06 26.7 0.0 1e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|313117435|ref|YP_004044418.1| - 3.3e-06 26.3 0.0 8.1e-06 25.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313117435|ref|YP_004044418.1| - 4.3e-05 23.0 0.0 6.9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313117435|ref|YP_004044418.1| - 0.00036 20.7 0.0 0.0023 18.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|313117435|ref|YP_004044418.1| - 0.0025 17.5 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|313117435|ref|YP_004044418.1| - 0.0047 17.0 0.0 0.0071 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313117435|ref|YP_004044418.1| - 0.067 13.3 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313117435|ref|YP_004044418.1| - 0.079 12.9 0.0 0.34 10.8 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313117435|ref|YP_004044418.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_17 PF12728.2 gi|313117435|ref|YP_004044418.1| - 0.097 12.9 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Desulfoferrod_N PF06397.7 gi|313117435|ref|YP_004044418.1| - 0.1 12.0 0.1 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain GntR PF00392.16 gi|313117435|ref|YP_004044418.1| - 0.15 11.5 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TetR_C_6 PF13977.1 gi|313117436|ref|YP_004044419.1| - 5e-13 49.0 0.6 6.9e-13 48.6 0.4 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|313117436|ref|YP_004044419.1| - 9.9e-07 28.3 0.0 1.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MatE PF01554.13 gi|313117437|ref|YP_004044420.1| - 4.8e-63 211.6 47.1 1.5e-34 118.9 9.0 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|313117437|ref|YP_004044420.1| - 7.7e-06 25.7 33.4 4.5e-05 23.2 12.1 5.6 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|313117437|ref|YP_004044420.1| - 0.8 8.0 37.3 7 4.9 24.4 2.7 1 1 0 1 1 1 0 MviN-like protein NAD_binding_10 PF13460.1 gi|313117438|ref|YP_004044421.1| - 5.1e-23 82.0 0.0 9.3e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313117438|ref|YP_004044421.1| - 6.1e-14 51.8 0.0 8.5e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|313117438|ref|YP_004044421.1| - 0.0013 17.7 0.0 0.0023 16.9 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|313117438|ref|YP_004044421.1| - 0.0033 16.8 0.0 0.018 14.4 0.0 2.1 3 0 0 3 3 3 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313117438|ref|YP_004044421.1| - 0.013 14.2 0.0 0.026 13.2 0.0 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HTH_23 PF13384.1 gi|313117438|ref|YP_004044421.1| - 0.017 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.14 gi|313117438|ref|YP_004044421.1| - 0.023 14.0 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family adh_short PF00106.20 gi|313117438|ref|YP_004044421.1| - 0.028 14.3 0.1 0.079 12.8 0.0 1.7 2 0 0 2 2 2 0 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|313117438|ref|YP_004044421.1| - 0.039 14.2 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|313117438|ref|YP_004044421.1| - 0.05 12.4 0.0 0.092 11.6 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Usp PF00582.21 gi|313117439|ref|YP_004044422.1| - 1.7e-27 96.3 0.6 1.9e-27 96.1 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family ASCH PF04266.9 gi|313117440|ref|YP_004044423.1| - 0.0056 17.0 0.1 0.0086 16.4 0.1 1.3 1 0 0 1 1 1 1 ASCH domain Gifsy-2 PF13856.1 gi|313117440|ref|YP_004044423.1| - 0.066 13.3 0.0 0.095 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage Peptidase_S8 PF00082.17 gi|313117441|ref|YP_004044424.1| - 1.3e-57 195.0 8.1 2e-57 194.5 5.6 1.3 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|313117441|ref|YP_004044424.1| - 0.0013 19.2 0.1 0.0033 17.9 0.1 1.8 1 0 0 1 1 1 1 Peptidase inhibitor I9 DUF4225 PF13988.1 gi|313117441|ref|YP_004044424.1| - 0.025 14.0 0.1 0.05 13.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) fn3 PF00041.16 gi|313117441|ref|YP_004044424.1| - 0.055 13.6 0.1 0.21 11.7 0.1 2.0 1 0 0 1 1 1 0 Fibronectin type III domain YHS PF04945.8 gi|313117442|ref|YP_004044425.1| - 1.1e-05 25.1 1.6 1.4e-05 24.8 0.4 1.7 2 0 0 2 2 2 1 YHS domain DUF2116 PF09889.4 gi|313117442|ref|YP_004044425.1| - 0.0039 16.9 0.4 0.43 10.4 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FCS PF06467.9 gi|313117442|ref|YP_004044425.1| - 0.0047 16.5 4.4 0.025 14.1 3.1 1.9 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|313117442|ref|YP_004044425.1| - 0.0061 15.8 0.9 0.02 14.1 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF581) Ecl1 PF12855.2 gi|313117442|ref|YP_004044425.1| - 0.016 14.5 1.2 0.029 13.6 0.8 1.5 1 1 0 1 1 1 0 Life-span regulatory factor NMD3 PF04981.8 gi|313117442|ref|YP_004044425.1| - 0.087 11.9 0.2 0.087 11.9 0.1 1.1 1 0 0 1 1 1 0 NMD3 family Arc_trans_TRASH PF08394.5 gi|313117442|ref|YP_004044425.1| - 0.13 12.4 0.1 1.2 9.3 0.0 2.0 2 0 0 2 2 2 0 Archaeal TRASH domain DUF4182 PF13790.1 gi|313117442|ref|YP_004044425.1| - 0.15 11.9 0.3 9.1 6.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) zf-ribbon_3 PF13248.1 gi|313117442|ref|YP_004044425.1| - 0.79 9.0 4.3 3 7.1 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF329 PF03884.9 gi|313117442|ref|YP_004044425.1| - 2.3 7.8 5.2 24 4.5 3.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF329) GAF_2 PF13185.1 gi|313117443|ref|YP_004044426.1| - 1e-28 100.6 0.3 2.1e-11 44.5 0.0 3.6 3 0 0 3 3 3 3 GAF domain HTH_10 PF04967.7 gi|313117443|ref|YP_004044426.1| - 1.7e-20 72.3 0.0 6.5e-20 70.4 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain GAF_3 PF13492.1 gi|313117443|ref|YP_004044426.1| - 5.4e-20 71.7 0.2 1.7e-05 24.8 0.0 3.4 3 0 0 3 3 3 3 GAF domain Response_reg PF00072.19 gi|313117443|ref|YP_004044426.1| - 3.4e-12 46.3 0.2 1.1e-11 44.7 0.1 2.0 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|313117443|ref|YP_004044426.1| - 1.6e-09 38.0 1.5 0.00018 21.6 0.0 3.6 3 0 0 3 3 3 2 GAF domain Sigma70_r4 PF04545.11 gi|313117443|ref|YP_004044426.1| - 0.0057 15.9 0.5 0.022 14.0 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|313117443|ref|YP_004044426.1| - 0.018 14.4 0.0 0.047 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FleQ PF06490.6 gi|313117443|ref|YP_004044426.1| - 0.029 14.5 0.1 0.47 10.6 0.0 3.0 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ DUF3281 PF11685.3 gi|313117444|ref|YP_004044427.1| - 0.052 12.7 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3281) HTH_20 PF12840.2 gi|313117445|ref|YP_004044428.1| - 4.2e-12 45.6 0.1 8.7e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313117445|ref|YP_004044428.1| - 7e-09 35.2 0.1 9.5e-09 34.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117445|ref|YP_004044428.1| - 3.7e-08 32.9 0.0 5.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313117445|ref|YP_004044428.1| - 1.6e-07 30.8 0.0 2.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117445|ref|YP_004044428.1| - 2.4e-07 30.3 0.1 3.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313117445|ref|YP_004044428.1| - 1e-05 24.7 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|313117445|ref|YP_004044428.1| - 1.4e-05 25.3 0.1 2.2e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|313117445|ref|YP_004044428.1| - 1.7e-05 24.5 0.0 2.6e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_IclR PF09339.5 gi|313117445|ref|YP_004044428.1| - 0.00033 20.1 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|313117445|ref|YP_004044428.1| - 0.00035 20.0 0.0 0.0005 19.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.1 gi|313117445|ref|YP_004044428.1| - 0.00038 20.4 0.0 0.00055 19.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|313117445|ref|YP_004044428.1| - 0.0033 17.1 0.9 0.014 15.1 0.1 2.0 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|313117445|ref|YP_004044428.1| - 0.0095 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix CLU_N PF15044.1 gi|313117445|ref|YP_004044428.1| - 0.036 14.2 0.0 0.06 13.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial function, CLU-N-term TFIIA_gamma_N PF02268.11 gi|313117445|ref|YP_004044428.1| - 0.056 13.0 0.1 0.19 11.3 0.1 1.9 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain HTH_45 PF14947.1 gi|313117445|ref|YP_004044428.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|313117445|ref|YP_004044428.1| - 0.14 12.0 1.8 0.41 10.5 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Lactamase_B PF00753.22 gi|313117449|ref|YP_004044432.1| - 1.1e-06 28.3 4.0 2.6e-06 27.2 2.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313117449|ref|YP_004044432.1| - 1.7e-05 24.4 1.3 2.1e-05 24.1 0.9 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Asp_Glu_race PF01177.17 gi|313117450|ref|YP_004044433.1| - 4.9e-30 105.0 0.2 5.7e-30 104.8 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Hydantoinase_B PF02538.9 gi|313117451|ref|YP_004044434.1| - 3.3e-166 553.6 0.0 3.8e-166 553.3 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|313117452|ref|YP_004044435.1| - 9.8e-91 303.8 13.0 6.8e-88 294.5 6.5 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|313117452|ref|YP_004044435.1| - 6.4e-52 175.5 4.1 3.6e-51 173.1 0.6 2.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|313117452|ref|YP_004044435.1| - 0.00023 19.6 4.2 0.0071 14.7 0.5 2.3 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|313117452|ref|YP_004044435.1| - 0.0054 16.0 3.1 0.13 11.5 2.3 2.8 1 1 1 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Gloverin PF10793.4 gi|313117452|ref|YP_004044435.1| - 0.049 13.2 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Gloverin-like protein EutA PF06277.6 gi|313117452|ref|YP_004044435.1| - 0.19 10.3 2.6 0.13 10.8 0.6 1.5 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA Nramp PF01566.13 gi|313117453|ref|YP_004044436.1| - 3.4e-97 325.4 26.4 4.5e-97 325.0 18.3 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Ceramidase PF05875.7 gi|313117453|ref|YP_004044436.1| - 0.01 14.9 0.5 0.02 14.0 0.1 1.7 2 0 0 2 2 2 0 Ceramidase RHH_1 PF01402.16 gi|313117454|ref|YP_004044437.1| - 1.4e-05 24.7 0.1 2.9e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|313117454|ref|YP_004044437.1| - 0.0012 18.5 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HTH_20 PF12840.2 gi|313117455|ref|YP_004044438.1| - 8.7e-06 25.4 0.0 3e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Rpr2 PF04032.11 gi|313117455|ref|YP_004044438.1| - 0.048 13.5 1.4 0.074 12.9 0.1 1.9 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-Mss51 PF13824.1 gi|313117455|ref|YP_004044438.1| - 0.064 13.1 0.3 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ima1_N PF09779.4 gi|313117455|ref|YP_004044438.1| - 0.12 12.9 1.8 6 7.3 0.3 2.5 1 1 1 2 2 2 0 Ima1 N-terminal domain zf-met PF12874.2 gi|313117456|ref|YP_004044439.1| - 0.0073 16.4 0.2 0.014 15.5 0.2 1.5 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.3 gi|313117456|ref|YP_004044439.1| - 0.012 15.7 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding DUF629 PF04780.7 gi|313117456|ref|YP_004044439.1| - 0.042 12.3 0.2 0.059 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-C2H2_4 PF13894.1 gi|313117456|ref|YP_004044439.1| - 0.05 13.9 1.2 0.13 12.6 0.9 1.7 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|313117456|ref|YP_004044439.1| - 0.098 13.0 0.6 0.19 12.1 0.4 1.5 1 0 0 1 1 1 0 Zinc finger, C2H2 type FAD_binding_4 PF01565.18 gi|313117457|ref|YP_004044440.1| - 9.9e-35 119.0 2.5 1.6e-34 118.3 1.7 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|313117457|ref|YP_004044440.1| - 2.7e-15 55.9 2.1 3.6e-15 55.5 0.6 1.9 2 0 0 2 2 2 1 Berberine and berberine like Gas_vesicle PF00741.13 gi|313117458|ref|YP_004044441.1| - 1.1e-12 47.6 6.4 1.3e-12 47.4 4.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein GvpL_GvpF PF06386.6 gi|313117459|ref|YP_004044442.1| - 2.3e-78 263.2 0.0 2.8e-78 262.9 0.0 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF DUF826 PF05696.6 gi|313117459|ref|YP_004044442.1| - 1.6 8.9 4.8 0.23 11.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF826) GvpK PF05121.7 gi|313117460|ref|YP_004044443.1| - 7.2e-28 96.2 7.7 8.7e-28 95.9 5.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein K FlxA PF14282.1 gi|313117460|ref|YP_004044443.1| - 0.0016 18.3 0.4 0.0021 17.9 0.2 1.3 1 0 0 1 1 1 1 FlxA-like protein OTCace_N PF02729.16 gi|313117460|ref|YP_004044443.1| - 0.0067 16.0 0.1 0.0089 15.6 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTV PF04180.9 gi|313117460|ref|YP_004044443.1| - 0.0092 15.5 0.9 0.012 15.1 0.4 1.3 1 1 0 1 1 1 1 Low temperature viability protein OmpH PF03938.9 gi|313117460|ref|YP_004044443.1| - 0.026 14.4 1.0 0.028 14.3 0.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Spc24 PF08286.6 gi|313117460|ref|YP_004044443.1| - 0.038 13.6 1.5 0.045 13.4 1.0 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Halogen_Hydrol PF10112.4 gi|313117460|ref|YP_004044443.1| - 0.042 13.2 0.3 0.075 12.4 0.1 1.4 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DivIC PF04977.10 gi|313117460|ref|YP_004044443.1| - 0.054 12.9 0.8 0.1 12.1 0.6 1.4 1 0 0 1 1 1 0 Septum formation initiator DUF948 PF06103.6 gi|313117460|ref|YP_004044443.1| - 0.057 13.2 0.2 0.088 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) MbeD_MobD PF04899.7 gi|313117460|ref|YP_004044443.1| - 0.081 12.8 1.8 0.13 12.1 0.6 1.9 2 1 0 2 2 2 0 MbeD/MobD like DUF2730 PF10805.3 gi|313117460|ref|YP_004044443.1| - 0.087 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Not3 PF04065.10 gi|313117460|ref|YP_004044443.1| - 0.092 12.0 0.8 0.11 11.6 0.6 1.1 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component DUF3138 PF11336.3 gi|313117460|ref|YP_004044443.1| - 0.13 10.3 0.1 0.14 10.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF3573 PF12097.3 gi|313117460|ref|YP_004044443.1| - 0.15 10.6 0.0 0.16 10.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) TPD52 PF04201.10 gi|313117460|ref|YP_004044443.1| - 0.32 10.6 2.5 0.51 10.0 1.5 1.3 1 1 0 1 1 1 0 Tumour protein D52 family Bap31 PF05529.7 gi|313117460|ref|YP_004044443.1| - 0.44 9.9 1.9 0.68 9.3 1.3 1.4 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like KfrA_N PF11740.3 gi|313117460|ref|YP_004044443.1| - 1.7 9.1 8.7 0.56 10.6 4.2 1.6 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF1192 PF06698.6 gi|313117460|ref|YP_004044443.1| - 4.4 7.2 8.9 6.2 6.7 4.4 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1192) Gas_vesicle PF00741.13 gi|313117461|ref|YP_004044444.1| - 1.6e-16 59.8 2.7 2e-16 59.5 1.9 1.1 1 0 0 1 1 1 1 Gas vesicle protein SASP_gamma PF04259.9 gi|313117461|ref|YP_004044444.1| - 0.039 14.0 0.3 0.054 13.6 0.2 1.2 1 0 0 1 1 1 0 Small, acid-soluble spore protein, gamma-type GvpH PF05455.6 gi|313117463|ref|YP_004044446.1| - 2.1e-56 190.3 11.3 2.5e-56 190.1 7.8 1.0 1 0 0 1 1 1 1 GvpH GvpG PF05120.7 gi|313117464|ref|YP_004044447.1| - 9.5e-05 22.1 1.9 0.00011 21.9 1.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.8 gi|313117464|ref|YP_004044447.1| - 0.01 16.0 1.5 0.012 15.9 1.0 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 Orthopox_A49R PF06489.6 gi|313117464|ref|YP_004044447.1| - 0.014 15.3 0.0 0.016 15.1 0.0 1.0 1 0 0 1 1 1 0 Orthopoxvirus A49R protein SHOCT PF09851.4 gi|313117464|ref|YP_004044447.1| - 0.044 13.2 3.6 0.094 12.2 1.8 2.1 2 0 0 2 2 2 0 Short C-terminal domain GvpL_GvpF PF06386.6 gi|313117465|ref|YP_004044448.1| - 7.7e-55 186.1 0.6 4.2e-31 108.4 0.0 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF PadR PF03551.9 gi|313117466|ref|YP_004044449.1| - 4.5e-09 35.9 0.0 1e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|313117466|ref|YP_004044449.1| - 0.011 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.15 gi|313117466|ref|YP_004044449.1| - 0.015 14.9 0.0 0.078 12.6 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|313117466|ref|YP_004044449.1| - 0.028 14.0 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEK_C PF08766.6 gi|313117466|ref|YP_004044449.1| - 0.03 14.1 0.6 33 4.3 0.0 3.6 4 0 0 4 4 4 0 DEK C terminal domain HTH_20 PF12840.2 gi|313117466|ref|YP_004044449.1| - 0.11 12.3 0.4 0.48 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GvpD PF07088.6 gi|313117467|ref|YP_004044450.1| - 1.6e-246 818.2 0.0 1.9e-246 818.0 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein KaiC PF06745.8 gi|313117467|ref|YP_004044450.1| - 1e-12 47.7 0.0 2e-09 36.9 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|313117467|ref|YP_004044450.1| - 6.6e-05 22.4 0.0 0.00024 20.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117467|ref|YP_004044450.1| - 0.0015 18.5 0.2 0.0062 16.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|313117467|ref|YP_004044450.1| - 0.0061 16.2 0.1 0.026 14.2 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain PAXNEB PF05625.6 gi|313117467|ref|YP_004044450.1| - 0.012 14.5 0.1 0.02 13.7 0.1 1.3 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.4 gi|313117467|ref|YP_004044450.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Gas_vesicle PF00741.13 gi|313117468|ref|YP_004044451.1| - 6.8e-16 57.8 6.9 8.7e-16 57.5 4.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein Halo_GVPC PF05465.8 gi|313117469|ref|YP_004044452.1| - 2e-53 177.3 77.2 1.9e-10 40.3 2.0 7.6 6 1 1 7 7 7 7 Halobacterial gas vesicle protein C (GVPC) repeat AAA_13 PF13166.1 gi|313117469|ref|YP_004044452.1| - 1.5e-08 33.6 4.4 1.5e-08 33.6 3.1 1.8 1 1 1 2 2 2 2 AAA domain TPR_MLP1_2 PF07926.7 gi|313117469|ref|YP_004044452.1| - 1.3e-06 28.1 7.1 0.0058 16.3 0.1 4.0 1 1 1 3 3 3 1 TPR/MLP1/MLP2-like protein Laminin_I PF06008.9 gi|313117469|ref|YP_004044452.1| - 4.9e-05 22.7 3.8 4.9e-05 22.7 2.6 2.1 1 1 1 2 2 2 1 Laminin Domain I CorA PF01544.13 gi|313117469|ref|YP_004044452.1| - 5.5e-05 22.3 3.2 5.5e-05 22.3 2.2 2.2 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|313117469|ref|YP_004044452.1| - 7e-05 22.5 6.0 0.21 11.2 1.0 3.0 1 1 2 3 3 3 2 Mnd1 family Filament PF00038.16 gi|313117469|ref|YP_004044452.1| - 7.7e-05 22.2 12.7 0.00014 21.4 8.8 1.5 1 1 0 1 1 1 1 Intermediate filament protein IncA PF04156.9 gi|313117469|ref|YP_004044452.1| - 0.00011 21.8 9.4 0.56 9.7 3.8 3.2 1 1 2 3 3 3 1 IncA protein Seryl_tRNA_N PF02403.17 gi|313117469|ref|YP_004044452.1| - 0.00015 21.6 4.3 0.55 10.2 0.0 3.8 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain LOH1CR12 PF10158.4 gi|313117469|ref|YP_004044452.1| - 0.00016 21.4 4.4 1.9 8.3 0.1 4.0 1 1 3 4 4 4 1 Tumour suppressor protein OmpH PF03938.9 gi|313117469|ref|YP_004044452.1| - 0.00027 20.8 15.4 1.6 8.6 4.4 3.6 1 1 1 2 2 2 1 Outer membrane protein (OmpH-like) GAS PF13851.1 gi|313117469|ref|YP_004044452.1| - 0.00047 19.4 2.7 0.072 12.2 0.0 3.1 1 1 2 3 3 3 1 Growth-arrest specific micro-tubule binding DUF869 PF05911.6 gi|313117469|ref|YP_004044452.1| - 0.00061 18.1 0.8 0.00082 17.7 0.6 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Vps5 PF09325.5 gi|313117469|ref|YP_004044452.1| - 0.00074 18.8 9.5 0.022 14.0 5.0 2.3 1 1 1 2 2 2 1 Vps5 C terminal like HsbA PF12296.3 gi|313117469|ref|YP_004044452.1| - 0.00091 19.0 2.4 1.3 8.8 0.0 3.1 1 1 2 3 3 3 1 Hydrophobic surface binding protein A Spc7 PF08317.6 gi|313117469|ref|YP_004044452.1| - 0.00097 17.8 1.4 0.36 9.4 0.0 2.6 1 1 2 3 3 3 1 Spc7 kinetochore protein APG17 PF04108.7 gi|313117469|ref|YP_004044452.1| - 0.0014 17.4 3.2 0.12 11.1 2.2 2.4 1 1 0 1 1 1 1 Autophagy protein Apg17 Lectin_N PF03954.9 gi|313117469|ref|YP_004044452.1| - 0.0023 17.3 0.1 0.9 8.9 0.0 3.0 1 1 1 2 2 2 1 Hepatic lectin, N-terminal domain CagZ PF09053.5 gi|313117469|ref|YP_004044452.1| - 0.0024 17.2 3.3 0.0068 15.7 1.0 2.3 1 1 1 2 2 2 1 CagZ DUF1664 PF07889.7 gi|313117469|ref|YP_004044452.1| - 0.0029 17.3 2.6 0.24 11.2 0.2 3.1 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) RTBV_P46 PF06216.6 gi|313117469|ref|YP_004044452.1| - 0.0047 15.8 0.2 0.018 13.9 0.1 1.8 1 1 0 2 2 2 1 Rice tungro bacilliform virus P46 protein Apolipoprotein PF01442.13 gi|313117469|ref|YP_004044452.1| - 0.0053 16.2 9.9 0.067 12.7 6.8 2.2 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain EHN PF06441.7 gi|313117469|ref|YP_004044452.1| - 0.0057 16.5 0.0 0.23 11.4 0.0 2.8 1 1 0 1 1 1 1 Epoxide hydrolase N terminus DUF2730 PF10805.3 gi|313117469|ref|YP_004044452.1| - 0.0078 15.9 1.6 14 5.5 0.0 4.4 3 1 2 5 5 5 0 Protein of unknown function (DUF2730) Phage_GP20 PF06810.6 gi|313117469|ref|YP_004044452.1| - 0.0085 15.5 4.6 1 8.7 0.1 3.4 1 1 0 3 3 3 1 Phage minor structural protein GP20 Baculo_PEP_C PF04513.7 gi|313117469|ref|YP_004044452.1| - 0.0087 15.8 1.7 6 6.6 0.0 3.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Streptin-Immun PF11083.3 gi|313117469|ref|YP_004044452.1| - 0.0088 16.0 1.3 55 3.8 0.0 4.2 2 1 1 4 4 4 0 Lantibiotic streptin immunity protein DUF904 PF06005.7 gi|313117469|ref|YP_004044452.1| - 0.016 15.5 0.8 0.62 10.3 0.1 2.9 4 0 0 4 4 2 0 Protein of unknown function (DUF904) Tup_N PF08581.5 gi|313117469|ref|YP_004044452.1| - 0.017 15.2 9.9 0.12 12.5 0.3 3.4 1 1 3 4 4 4 0 Tup N-terminal Bacillus_HBL PF05791.6 gi|313117469|ref|YP_004044452.1| - 0.018 14.4 6.8 1.3 8.3 0.2 3.5 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) ALIX_LYPXL_bnd PF13949.1 gi|313117469|ref|YP_004044452.1| - 0.03 13.2 6.8 0.24 10.3 0.8 2.7 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV HAUS5 PF14817.1 gi|313117469|ref|YP_004044452.1| - 0.031 12.8 4.4 0.22 9.9 0.3 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 DUF4200 PF13863.1 gi|313117469|ref|YP_004044452.1| - 0.038 13.9 14.3 0.38 10.7 0.9 4.4 2 2 1 4 4 4 0 Domain of unknown function (DUF4200) YgaB PF14182.1 gi|313117469|ref|YP_004044452.1| - 0.041 14.1 6.8 1.5 9.1 0.1 4.2 3 2 1 4 4 3 0 YgaB-like protein DUF2605 PF10792.4 gi|313117469|ref|YP_004044452.1| - 0.056 13.1 3.0 3.1 7.5 0.0 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF2605) ECM11 PF15463.1 gi|313117469|ref|YP_004044452.1| - 0.06 13.6 0.1 0.06 13.6 0.1 3.1 4 0 0 4 4 2 0 Extracellular mutant protein 11 Mod_r PF07200.8 gi|313117469|ref|YP_004044452.1| - 0.066 13.1 7.6 0.35 10.7 0.6 2.8 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Complex1_LYR_2 PF13233.1 gi|313117469|ref|YP_004044452.1| - 0.075 13.5 2.3 0.79 10.2 0.4 2.9 1 1 1 2 2 2 0 Complex1_LYR-like gpW PF02831.10 gi|313117469|ref|YP_004044452.1| - 0.083 12.4 2.3 16 5.1 0.0 3.8 4 0 0 4 4 3 0 gpW DUF16 PF01519.11 gi|313117469|ref|YP_004044452.1| - 0.11 12.7 3.3 6.2 7.0 0.1 2.7 2 1 0 3 3 2 0 Protein of unknown function DUF16 DUF1367 PF07105.6 gi|313117469|ref|YP_004044452.1| - 0.11 11.8 4.4 0.87 8.9 0.2 3.1 1 1 0 3 3 3 0 Protein of unknown function (DUF1367) DUF2508 PF10704.4 gi|313117469|ref|YP_004044452.1| - 0.12 12.6 7.4 2.4 8.3 0.2 4.5 1 1 5 6 6 5 0 Protein of unknown function (DUF2508) WXG100 PF06013.7 gi|313117469|ref|YP_004044452.1| - 0.13 12.3 17.1 8.6 6.4 0.1 4.6 1 1 5 6 6 6 0 Proteins of 100 residues with WXG DUF3770 PF12603.3 gi|313117469|ref|YP_004044452.1| - 0.15 11.1 9.4 0.13 11.3 1.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3770) Med9 PF07544.8 gi|313117469|ref|YP_004044452.1| - 0.15 11.8 3.2 2.7 7.7 0.2 3.7 1 1 2 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Cor1 PF04803.7 gi|313117469|ref|YP_004044452.1| - 0.17 11.6 3.9 0.23 11.2 0.3 2.5 2 2 0 2 2 2 0 Cor1/Xlr/Xmr conserved region Cortex-I_coil PF09304.5 gi|313117469|ref|YP_004044452.1| - 0.18 11.8 6.9 0.33 11.0 0.4 3.3 1 1 3 4 4 4 0 Cortexillin I, coiled coil CENP-F_leu_zip PF10473.4 gi|313117469|ref|YP_004044452.1| - 0.19 11.5 5.1 2.1 8.1 0.1 3.3 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FimP PF09766.4 gi|313117469|ref|YP_004044452.1| - 0.2 10.6 2.0 0.75 8.8 0.4 2.2 2 0 0 2 2 2 0 Fms-interacting protein Spectrin PF00435.16 gi|313117469|ref|YP_004044452.1| - 0.22 11.8 10.7 4.1 7.7 0.5 4.3 1 1 1 3 3 3 0 Spectrin repeat PilJ PF13675.1 gi|313117469|ref|YP_004044452.1| - 0.22 11.8 10.9 2 8.7 0.6 3.6 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term MutS_III PF05192.13 gi|313117469|ref|YP_004044452.1| - 0.25 11.0 9.1 0.12 12.1 3.0 2.1 1 1 1 2 2 2 0 MutS domain III Phasin PF05597.6 gi|313117469|ref|YP_004044452.1| - 0.29 10.9 7.9 4.9 6.9 0.1 3.5 1 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) BLOC1_2 PF10046.4 gi|313117469|ref|YP_004044452.1| - 0.31 11.1 4.8 47 4.2 0.1 4.0 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V-SNARE PF05008.10 gi|313117469|ref|YP_004044452.1| - 0.41 10.8 3.3 15 5.8 0.2 3.5 3 2 0 3 3 2 0 Vesicle transport v-SNARE protein N-terminus DUF4241 PF14025.1 gi|313117469|ref|YP_004044452.1| - 0.43 10.3 6.9 0.077 12.7 0.8 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF4241) DMPK_coil PF08826.5 gi|313117469|ref|YP_004044452.1| - 0.59 10.0 6.0 14 5.6 0.1 3.8 4 1 0 4 4 3 0 DMPK coiled coil domain like DUF3348 PF11828.3 gi|313117469|ref|YP_004044452.1| - 0.65 9.3 9.6 0.13 11.6 1.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3348) V_ATPase_I PF01496.14 gi|313117469|ref|YP_004044452.1| - 0.67 7.7 3.4 1.4 6.6 2.4 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DASH_Spc34 PF08657.5 gi|313117469|ref|YP_004044452.1| - 0.75 9.4 5.1 1.5 8.4 1.2 2.6 1 1 0 2 2 2 0 DASH complex subunit Spc34 Rab5-bind PF09311.6 gi|313117469|ref|YP_004044452.1| - 0.88 9.4 5.6 0.26 11.1 0.9 2.0 1 1 0 1 1 1 0 Rabaptin-like protein FtsK_SpoIIIE PF01580.13 gi|313117469|ref|YP_004044452.1| - 1.3 8.4 6.2 0.19 11.2 0.9 2.0 1 1 1 2 2 2 0 FtsK/SpoIIIE family DUF2779 PF11074.3 gi|313117469|ref|YP_004044452.1| - 1.7 8.6 4.6 17 5.4 0.2 2.7 1 1 0 2 2 2 0 Domain of unknown function(DUF2779) Alph_Pro_TM PF09608.5 gi|313117469|ref|YP_004044452.1| - 1.8 8.0 4.3 1.1 8.6 0.2 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (Alph_Pro_TM) DUF2664 PF10867.3 gi|313117469|ref|YP_004044452.1| - 1.8 9.2 9.7 3.6 8.2 1.1 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF2664) DUF724 PF05266.9 gi|313117469|ref|YP_004044452.1| - 2.2 7.8 11.2 3.9 7.0 1.0 2.9 1 1 0 3 3 3 0 Protein of unknown function (DUF724) CCP_MauG PF03150.9 gi|313117469|ref|YP_004044452.1| - 3.3 7.9 16.6 1.2 9.3 0.6 3.4 1 1 2 3 3 3 0 Di-haem cytochrome c peroxidase FlgN PF05130.7 gi|313117469|ref|YP_004044452.1| - 4.5 7.5 6.7 5.4 7.2 1.6 2.7 2 2 0 2 2 2 0 FlgN protein APG6 PF04111.7 gi|313117469|ref|YP_004044452.1| - 6.8 5.6 9.6 13 4.6 0.5 2.3 1 1 2 3 3 3 0 Autophagy protein Apg6 Rotamase PF00639.16 gi|313117469|ref|YP_004044452.1| - 7.9 7.2 16.2 17 6.2 0.1 4.4 2 1 3 5 5 5 0 PPIC-type PPIASE domain 4HB_MCP_1 PF12729.2 gi|313117469|ref|YP_004044452.1| - 8.2 5.7 11.2 7.9 5.7 0.2 3.7 1 1 3 4 4 4 0 Four helix bundle sensory module for signal transduction FUSC PF04632.7 gi|313117469|ref|YP_004044452.1| - 8.4 4.6 14.1 3.3e+02 -0.6 9.8 2.1 1 1 0 1 1 1 0 Fusaric acid resistance protein family ROS_MUCR PF05443.6 gi|313117470|ref|YP_004044453.1| - 9.5e-08 31.8 0.0 1.1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein AAA_5 PF07728.9 gi|313117471|ref|YP_004044454.1| - 1.3e-18 67.0 0.0 2.7e-17 62.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313117471|ref|YP_004044454.1| - 1.6e-05 25.1 0.0 4.7e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|313117471|ref|YP_004044454.1| - 2.3e-05 24.0 0.0 0.0043 16.6 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|313117471|ref|YP_004044454.1| - 8e-05 22.1 0.0 0.00018 21.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|313117471|ref|YP_004044454.1| - 0.00018 21.6 0.0 0.00051 20.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313117471|ref|YP_004044454.1| - 0.002 18.1 0.2 0.015 15.2 0.0 2.3 2 2 0 2 2 2 1 AAA ATPase domain Sigma54_activ_2 PF14532.1 gi|313117471|ref|YP_004044454.1| - 0.0035 17.3 0.0 0.012 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|313117471|ref|YP_004044454.1| - 0.0039 16.9 0.0 0.017 14.8 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|313117471|ref|YP_004044454.1| - 0.0041 17.9 0.2 0.054 14.3 0.0 2.5 1 1 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|313117471|ref|YP_004044454.1| - 0.0054 15.4 0.0 0.033 12.9 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus Sigma54_activat PF00158.21 gi|313117471|ref|YP_004044454.1| - 0.0055 16.1 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain CbbQ_C PF08406.5 gi|313117471|ref|YP_004044454.1| - 0.0061 16.5 0.8 0.011 15.6 0.6 1.5 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal AAA_14 PF13173.1 gi|313117471|ref|YP_004044454.1| - 0.0066 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|313117471|ref|YP_004044454.1| - 0.0078 16.5 0.1 0.015 15.5 0.0 1.8 2 1 0 2 2 1 1 ABC transporter NACHT PF05729.7 gi|313117471|ref|YP_004044454.1| - 0.015 15.0 0.0 0.045 13.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|313117471|ref|YP_004044454.1| - 0.015 14.7 0.0 0.06 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|313117471|ref|YP_004044454.1| - 0.017 14.3 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.11 gi|313117471|ref|YP_004044454.1| - 0.018 14.3 0.0 0.069 12.3 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.1 gi|313117471|ref|YP_004044454.1| - 0.025 14.4 2.3 0.08 12.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain RuvB_N PF05496.7 gi|313117471|ref|YP_004044454.1| - 0.03 13.3 0.0 0.32 9.9 0.0 2.3 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_7 PF12775.2 gi|313117471|ref|YP_004044454.1| - 0.091 11.8 0.0 0.47 9.4 0.0 1.9 1 1 1 2 2 2 0 P-loop containing dynein motor region D3 AAA_28 PF13521.1 gi|313117471|ref|YP_004044454.1| - 0.12 12.3 1.1 0.33 10.8 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|313117471|ref|YP_004044454.1| - 0.13 12.0 0.0 0.34 10.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|313117471|ref|YP_004044454.1| - 0.16 12.2 2.7 0.18 12.1 0.0 2.4 3 1 0 3 3 3 0 AAA domain GvpO PF05800.6 gi|313117472|ref|YP_004044455.1| - 7.7e-37 125.2 0.6 1.1e-36 124.6 0.4 1.3 1 1 0 1 1 1 1 Gas vesicle synthesis protein GvpO PGA2 PF07543.7 gi|313117472|ref|YP_004044455.1| - 0.015 15.1 0.4 0.024 14.4 0.3 1.4 1 0 0 1 1 1 0 Protein trafficking PGA2 FTHFS PF01268.14 gi|313117473|ref|YP_004044456.1| - 3.9e-245 814.1 0.0 4.3e-245 813.9 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase HATPase_c PF02518.21 gi|313117474|ref|YP_004044457.1| - 7.4e-21 73.9 0.1 2.1e-20 72.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|313117474|ref|YP_004044457.1| - 8.3e-08 31.8 0.0 1.3e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|313117474|ref|YP_004044457.1| - 5.4e-07 29.4 0.0 1.2e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|313117474|ref|YP_004044457.1| - 2.4e-05 24.2 0.6 5.9e-05 22.9 0.2 1.9 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|313117474|ref|YP_004044457.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_9 PF13426.1 gi|313117475|ref|YP_004044458.1| - 1.5e-46 157.0 0.8 3.8e-17 62.5 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|313117475|ref|YP_004044458.1| - 2e-46 155.9 0.2 2.7e-17 62.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|313117475|ref|YP_004044458.1| - 1.7e-41 140.7 1.1 2e-16 59.9 0.1 3.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|313117475|ref|YP_004044458.1| - 7.7e-38 128.7 0.3 9.8e-15 54.3 0.0 3.2 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|313117475|ref|YP_004044458.1| - 2.7e-19 69.2 0.0 7.3e-19 67.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|313117475|ref|YP_004044458.1| - 1.7e-16 59.4 0.3 0.00024 20.8 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_11 PF14598.1 gi|313117475|ref|YP_004044458.1| - 2.3e-05 24.3 0.0 0.00082 19.3 0.0 2.6 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|313117475|ref|YP_004044458.1| - 0.00045 20.1 5.3 1.6 8.8 0.0 4.7 3 2 1 4 4 4 2 PAS fold Glyco_tranf_2_4 PF13704.1 gi|313117475|ref|YP_004044458.1| - 0.073 13.3 0.0 0.28 11.5 0.0 2.0 1 0 0 1 1 1 0 Glycosyl transferase family 2 Molybdopterin PF00384.17 gi|313117476|ref|YP_004044459.1| - 4.8e-85 285.8 0.0 5.9e-85 285.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|313117476|ref|YP_004044459.1| - 5.9e-32 109.7 0.0 1.2e-31 108.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|313117476|ref|YP_004044459.1| - 1.1e-25 89.2 0.6 2.3e-25 88.2 0.4 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|313117476|ref|YP_004044459.1| - 9.5e-14 50.3 0.8 2.7e-13 48.9 0.5 1.9 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|313117476|ref|YP_004044459.1| - 5.7e-10 38.8 0.0 1.9e-09 37.1 0.0 2.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.2 gi|313117476|ref|YP_004044459.1| - 2.7e-09 37.2 10.1 2.3e-07 31.0 6.3 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|313117476|ref|YP_004044459.1| - 1.7e-08 34.2 8.9 1.7e-08 34.2 6.2 2.8 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313117476|ref|YP_004044459.1| - 6e-07 28.8 23.0 0.00023 20.6 1.9 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|313117476|ref|YP_004044459.1| - 7e-07 28.9 10.5 7e-07 28.9 7.3 3.2 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313117476|ref|YP_004044459.1| - 2.9e-06 27.1 7.7 2.9e-06 27.1 5.3 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313117476|ref|YP_004044459.1| - 8.9e-06 25.3 13.4 1.8e-05 24.3 1.7 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313117476|ref|YP_004044459.1| - 3.2e-05 24.1 12.1 3.2e-05 24.1 8.4 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|313117476|ref|YP_004044459.1| - 0.00039 20.9 10.1 0.011 16.2 0.5 3.7 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|313117476|ref|YP_004044459.1| - 0.00051 20.7 13.6 0.006 17.3 1.2 4.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|313117476|ref|YP_004044459.1| - 0.00095 18.9 2.8 0.00095 18.9 1.9 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain CDC48_N PF02359.13 gi|313117476|ref|YP_004044459.1| - 0.009 15.9 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Fer4_17 PF13534.1 gi|313117476|ref|YP_004044459.1| - 0.077 13.3 0.4 0.077 13.3 0.3 4.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313117476|ref|YP_004044459.1| - 0.19 12.1 22.8 0.17 12.3 2.7 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|313117476|ref|YP_004044459.1| - 0.53 10.7 15.2 0.9 9.9 2.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Zn-ribbon_8 PF09723.5 gi|313117478|ref|YP_004044461.1| - 0.0033 17.3 1.3 0.013 15.4 0.2 2.0 2 0 0 2 2 2 1 Zinc ribbon domain zf-RING_3 PF14369.1 gi|313117478|ref|YP_004044461.1| - 0.0036 17.2 1.8 0.061 13.3 0.2 2.3 2 0 0 2 2 2 1 zinc-finger TF_Zn_Ribbon PF08271.7 gi|313117478|ref|YP_004044461.1| - 0.011 14.9 4.8 0.13 11.6 0.7 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|313117478|ref|YP_004044461.1| - 0.015 14.5 0.2 0.015 14.5 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313117478|ref|YP_004044461.1| - 0.018 14.6 0.1 0.018 14.6 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313117478|ref|YP_004044461.1| - 0.057 13.1 0.1 0.057 13.1 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|313117478|ref|YP_004044461.1| - 0.083 13.2 2.6 0.18 12.0 1.8 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|313117478|ref|YP_004044461.1| - 9.3 6.0 6.6 3.3 7.5 1.5 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Hexapep PF00132.19 gi|313117479|ref|YP_004044462.1| - 3.6e-11 42.0 8.9 8.8e-07 28.1 1.8 3.2 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|313117479|ref|YP_004044462.1| - 1.3e-05 25.4 0.0 2.2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|313117479|ref|YP_004044462.1| - 0.00019 20.8 3.8 0.0028 17.1 0.6 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase E1-E2_ATPase PF00122.15 gi|313117480|ref|YP_004044463.1| - 1.1e-74 250.3 1.9 1.1e-74 250.3 1.3 2.6 2 1 1 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|313117480|ref|YP_004044463.1| - 3.7e-40 138.6 4.3 9.1e-40 137.3 3.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|313117480|ref|YP_004044463.1| - 1.7e-34 118.9 6.1 1.7e-34 118.9 4.2 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|313117480|ref|YP_004044463.1| - 4.6e-18 64.4 0.0 9.5e-18 63.4 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|313117480|ref|YP_004044463.1| - 1.2e-17 64.6 0.2 3.4e-17 63.2 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|313117480|ref|YP_004044463.1| - 6.1e-17 61.3 0.0 1.5e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|313117480|ref|YP_004044463.1| - 7.5e-06 25.6 0.2 0.00021 20.9 0.4 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF3357 PF11837.3 gi|313117480|ref|YP_004044463.1| - 0.11 12.3 0.7 1.1 9.1 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) VIT1 PF01988.14 gi|313117481|ref|YP_004044464.1| - 6.4e-18 65.0 13.5 2.8e-11 43.3 4.9 2.0 1 1 1 2 2 2 2 VIT family Gly-zipper_OmpA PF13436.1 gi|313117481|ref|YP_004044464.1| - 1.4 8.5 7.2 4.4 6.9 0.1 2.3 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain DUF211 PF02680.9 gi|313117482|ref|YP_004044465.1| - 2.9e-31 107.1 0.5 3.1e-31 107.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 LigD_N PF13298.1 gi|313117482|ref|YP_004044465.1| - 0.11 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase Ligase (LigD) Phage_integrase PF00589.17 gi|313117483|ref|YP_004044466.1| - 9.9e-08 31.8 0.0 1.5e-06 28.0 0.0 2.5 1 1 0 1 1 1 1 Phage integrase family FdsD PF11390.3 gi|313117483|ref|YP_004044466.1| - 0.0084 16.1 0.1 0.048 13.7 0.0 2.1 2 0 0 2 2 2 1 NADH-dependant formate dehydrogenase delta subunit FdsD BATS PF06968.8 gi|313117484|ref|YP_004044467.1| - 3.8e-23 81.1 0.0 1.7e-22 79.0 0.0 2.0 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|313117484|ref|YP_004044467.1| - 4.6e-13 49.6 0.1 1.9e-11 44.4 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily GFO_IDH_MocA PF01408.17 gi|313117485|ref|YP_004044468.1| - 0.00074 20.0 3.3 0.0035 17.8 0.2 2.9 3 1 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.16 gi|313117485|ref|YP_004044468.1| - 0.0012 18.4 0.1 0.003 17.1 0.1 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|313117485|ref|YP_004044468.1| - 0.0038 16.2 0.8 0.024 13.6 0.5 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase Pup PF05639.6 gi|313117485|ref|YP_004044468.1| - 5.4 7.5 7.4 2 8.9 1.2 2.6 2 1 0 2 2 2 0 Pup-like protein Aminotran_1_2 PF00155.16 gi|313117486|ref|YP_004044469.1| - 1.5e-61 208.4 0.0 1.7e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|313117486|ref|YP_004044469.1| - 0.0013 17.1 0.0 0.0024 16.2 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|313117486|ref|YP_004044469.1| - 0.002 17.2 3.2 0.0053 15.8 2.0 1.9 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.16 gi|313117486|ref|YP_004044469.1| - 0.032 13.0 0.0 0.066 12.0 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-III Aminotran_5 PF00266.14 gi|313117486|ref|YP_004044469.1| - 0.07 11.8 0.0 0.13 10.9 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class-V AAA_26 PF13500.1 gi|313117487|ref|YP_004044470.1| - 3.7e-38 131.1 0.0 4.3e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|313117487|ref|YP_004044470.1| - 3.3e-08 33.1 0.7 7.1e-08 32.0 0.5 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|313117487|ref|YP_004044470.1| - 3.2e-05 22.7 1.8 0.00019 20.1 1.3 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1611) FTHFS PF01268.14 gi|313117487|ref|YP_004044470.1| - 0.063 11.2 0.3 0.089 10.7 0.2 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Abi PF02517.11 gi|313117488|ref|YP_004044471.1| - 2e-16 59.9 7.5 2e-16 59.9 5.2 2.8 3 1 0 3 3 3 1 CAAX protease self-immunity CcoS PF03597.10 gi|313117489|ref|YP_004044472.1| - 1.1 8.7 5.7 1.5 8.3 0.3 2.3 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Peripla_BP_2 PF01497.13 gi|313117491|ref|YP_004044474.1| - 4.9e-16 58.5 0.0 9.1e-16 57.7 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313117491|ref|YP_004044474.1| - 0.014 15.3 0.1 0.035 14.1 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_65m PF03632.10 gi|313117491|ref|YP_004044474.1| - 0.082 11.5 0.1 2.9 6.4 0.1 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 65 central catalytic domain ABC2_membrane_2 PF12679.2 gi|313117492|ref|YP_004044475.1| - 4.2e-20 71.7 9.2 5.6e-20 71.3 6.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117492|ref|YP_004044475.1| - 5.7e-08 32.2 19.4 2e-07 30.3 13.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117492|ref|YP_004044475.1| - 1.2e-06 27.9 4.0 1.2e-06 27.9 2.8 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117492|ref|YP_004044475.1| - 6.9e-06 25.3 14.2 8.4e-06 25.0 9.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2561 PF10812.3 gi|313117492|ref|YP_004044475.1| - 0.0043 16.6 0.6 0.0043 16.6 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2561) CD20 PF04103.10 gi|313117492|ref|YP_004044475.1| - 0.023 14.6 0.6 0.023 14.6 0.4 1.8 2 0 0 2 2 2 0 CD20-like family PQQ_2 PF13360.1 gi|313117493|ref|YP_004044476.1| - 1.8e-31 109.4 5.3 7.5e-21 74.6 0.1 2.8 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|313117493|ref|YP_004044476.1| - 2.2e-21 75.4 14.3 0.0012 19.0 0.2 7.6 7 0 0 7 7 7 6 PQQ-like domain PQQ PF01011.16 gi|313117493|ref|YP_004044476.1| - 7.4e-19 66.2 2.4 0.01 15.3 0.0 6.4 6 0 0 6 6 6 5 PQQ enzyme repeat EFhand_Ca_insen PF08726.5 gi|313117493|ref|YP_004044476.1| - 0.051 13.5 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 Ca2+ insensitive EF hand TAT_signal PF10518.4 gi|313117493|ref|YP_004044476.1| - 0.17 11.9 1.6 0.61 10.2 1.1 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BCCT PF02028.12 gi|313122550|ref|YP_004044477.1| - 7.3e-111 370.7 52.8 8.5e-111 370.5 36.6 1.0 1 0 0 1 1 1 1 BCCT family transporter BPD_transp_1 PF00528.17 gi|313122553|ref|YP_004044480.1| - 6.6e-15 55.1 15.0 6.6e-15 55.1 10.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_UL49_5 PF05702.6 gi|313122553|ref|YP_004044480.1| - 0.017 14.9 2.5 0.073 12.9 0.4 2.4 2 0 0 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein BPD_transp_1 PF00528.17 gi|313122554|ref|YP_004044481.1| - 4.4e-08 32.8 23.9 4.4e-08 32.8 16.5 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|313122555|ref|YP_004044482.1| - 4.8e-37 127.3 0.0 8.6e-37 126.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122555|ref|YP_004044482.1| - 1.7e-13 51.2 0.0 5.2e-08 33.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|313122555|ref|YP_004044482.1| - 1.7e-06 27.3 0.0 0.00094 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|313122555|ref|YP_004044482.1| - 9.3e-06 25.0 0.0 0.0093 15.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|313122555|ref|YP_004044482.1| - 1.3e-05 25.9 0.3 9e-05 23.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|313122555|ref|YP_004044482.1| - 1.4e-05 25.2 0.1 3.8e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313122555|ref|YP_004044482.1| - 5.3e-05 23.2 1.4 0.00029 20.8 1.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|313122555|ref|YP_004044482.1| - 9.4e-05 22.6 0.0 0.00061 19.9 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|313122555|ref|YP_004044482.1| - 0.00042 19.5 0.0 0.00069 18.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313122555|ref|YP_004044482.1| - 0.00051 19.4 0.0 0.0024 17.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|313122555|ref|YP_004044482.1| - 0.0011 18.8 0.0 0.003 17.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|313122555|ref|YP_004044482.1| - 0.0013 18.4 0.3 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|313122555|ref|YP_004044482.1| - 0.0017 18.6 0.0 0.0065 16.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313122555|ref|YP_004044482.1| - 0.002 18.0 0.0 0.0039 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|313122555|ref|YP_004044482.1| - 0.0058 15.3 0.0 0.0077 14.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|313122555|ref|YP_004044482.1| - 0.0089 16.0 0.1 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|313122555|ref|YP_004044482.1| - 0.015 15.4 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|313122555|ref|YP_004044482.1| - 0.017 14.8 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|313122555|ref|YP_004044482.1| - 0.017 14.8 0.0 0.045 13.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|313122555|ref|YP_004044482.1| - 0.021 14.3 0.0 0.055 13.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313122555|ref|YP_004044482.1| - 0.022 15.1 0.1 0.035 14.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313122555|ref|YP_004044482.1| - 0.029 14.0 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|313122555|ref|YP_004044482.1| - 0.037 13.1 0.1 0.37 9.9 0.0 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI TOBE_2 PF08402.5 gi|313122555|ref|YP_004044482.1| - 0.044 13.7 0.1 0.15 12.1 0.0 2.0 1 0 0 1 1 1 0 TOBE domain Miro PF08477.8 gi|313122555|ref|YP_004044482.1| - 0.077 13.4 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|313122555|ref|YP_004044482.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|313122555|ref|YP_004044482.1| - 0.085 12.3 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.20 gi|313122555|ref|YP_004044482.1| - 0.097 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|313122555|ref|YP_004044482.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.7 gi|313122555|ref|YP_004044482.1| - 0.1 11.6 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|313122555|ref|YP_004044482.1| - 0.12 12.1 0.1 0.5 10.1 0.0 2.1 2 0 0 2 2 1 0 Part of AAA domain AAA_24 PF13479.1 gi|313122555|ref|YP_004044482.1| - 0.16 11.5 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313122555|ref|YP_004044482.1| - 0.16 11.8 0.3 1.3 9.0 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SBP_bac_8 PF13416.1 gi|313122556|ref|YP_004044483.1| - 1.7e-11 44.3 6.7 2.6e-11 43.8 4.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313122556|ref|YP_004044483.1| - 1.6e-08 34.1 1.7 5.1e-08 32.5 0.6 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|313122556|ref|YP_004044483.1| - 1.1 9.4 3.8 1.8 8.7 2.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fe-ADH PF00465.14 gi|313122557|ref|YP_004044484.1| - 2.5e-111 371.8 2.6 2.8e-111 371.7 1.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|313122557|ref|YP_004044484.1| - 3.3e-17 62.6 1.6 5.2e-11 42.3 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1485 PF07364.7 gi|313122558|ref|YP_004044485.1| - 8.4e-88 294.3 0.9 1.1e-87 293.9 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1485) MlrC_C PF07171.7 gi|313122558|ref|YP_004044485.1| - 7.4e-52 175.4 0.1 1.2e-51 174.8 0.1 1.3 1 0 0 1 1 1 1 MlrC C-terminus Aldedh PF00171.17 gi|313122559|ref|YP_004044486.1| - 7.4e-160 532.2 0.5 9.2e-160 531.9 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|313122559|ref|YP_004044486.1| - 2.2e-05 23.4 0.0 4.4e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Gln-synt_C PF00120.19 gi|313122560|ref|YP_004044487.1| - 4.1e-73 245.7 0.0 3.9e-72 242.5 0.0 2.0 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|313122560|ref|YP_004044487.1| - 6.8e-05 22.3 0.0 0.0076 15.8 0.0 2.3 2 0 0 2 2 2 2 Glutamine synthetase, beta-Grasp domain PhoD PF09423.5 gi|313122562|ref|YP_004044489.1| - 3.2e-78 263.3 1.5 4.6e-78 262.8 1.1 1.2 1 0 0 1 1 1 1 PhoD-like phosphatase Laminin_B PF00052.13 gi|313122562|ref|YP_004044489.1| - 2.3e-15 56.4 0.0 3.9e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Laminin B (Domain IV) fn3 PF00041.16 gi|313122562|ref|YP_004044489.1| - 0.019 15.0 2.2 0.056 13.5 0.8 2.4 2 0 0 2 2 2 0 Fibronectin type III domain Thiol-ester_cl PF10569.4 gi|313122563|ref|YP_004044490.1| - 0.026 13.7 0.2 0.05 12.8 0.2 1.4 1 0 0 1 1 1 0 Alpha-macro-globulin thiol-ester bond-forming region Aft1_HRR PF11787.3 gi|313122563|ref|YP_004044490.1| - 0.39 11.8 4.0 0.49 11.4 2.5 1.4 1 1 0 1 1 1 0 Aft1 HRR domain Pectate_lyase_3 PF12708.2 gi|313122564|ref|YP_004044491.1| - 1.1e-18 68.2 9.6 1.1e-18 68.2 6.6 2.5 1 1 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|313122564|ref|YP_004044491.1| - 5.6e-18 65.1 40.4 2.6e-08 33.7 17.7 3.5 1 1 1 2 2 2 2 Right handed beta helix region End_N_terminal PF12218.3 gi|313122564|ref|YP_004044491.1| - 0.027 13.9 0.3 0.17 11.3 0.0 2.4 2 0 0 2 2 2 0 N terminal extension of bacteriophage endosialidase HTH_20 PF12840.2 gi|313122567|ref|YP_004044494.1| - 0.027 14.2 0.4 0.12 12.1 0.3 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain CopD PF05425.8 gi|313122568|ref|YP_004044495.1| - 0.033 14.3 0.9 0.055 13.6 0.2 1.6 1 1 0 1 1 1 0 Copper resistance protein D Usp PF00582.21 gi|313122569|ref|YP_004044496.1| - 1.1e-25 90.5 1.2 1.2e-25 90.2 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family ATP-grasp_5 PF13549.1 gi|313122569|ref|YP_004044496.1| - 0.065 12.4 0.1 0.075 12.2 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain PHO4 PF01384.15 gi|313122570|ref|YP_004044497.1| - 1.9e-37 128.6 33.5 4.1e-37 127.5 23.2 1.6 1 1 0 1 1 1 1 Phosphate transporter family PQQ_2 PF13360.1 gi|313122571|ref|YP_004044498.1| - 7.1e-43 146.7 10.9 9.4e-30 103.8 2.9 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|313122571|ref|YP_004044498.1| - 6.2e-36 121.6 13.6 1.1e-06 28.6 0.1 8.0 7 1 1 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|313122571|ref|YP_004044498.1| - 1.3e-24 84.4 1.4 0.00015 21.1 0.1 6.7 6 0 0 6 6 6 5 PQQ enzyme repeat Arylsulfotrans PF05935.6 gi|313122571|ref|YP_004044498.1| - 0.018 13.5 0.0 0.029 12.8 0.0 1.3 1 0 0 1 1 1 0 Arylsulfotransferase (ASST) CBM_6 PF03422.10 gi|313122571|ref|YP_004044498.1| - 0.02 15.0 0.8 0.045 13.9 0.5 1.6 1 0 0 1 1 1 0 Carbohydrate binding module (family 6) ZU5 PF00791.15 gi|313122571|ref|YP_004044498.1| - 0.082 12.5 0.0 0.35 10.5 0.0 2.1 1 1 0 1 1 1 0 ZU5 domain Pentapeptide_3 PF13576.1 gi|313122572|ref|YP_004044499.1| - 2.1e-09 37.1 37.0 0.00029 20.6 11.4 5.8 3 1 4 7 7 7 6 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|313122572|ref|YP_004044499.1| - 0.0035 17.1 8.8 0.77 9.5 4.7 3.7 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|313122573|ref|YP_004044500.1| - 6.8e-08 31.5 2.9 1.3e-07 30.7 0.8 2.0 2 0 0 2 2 2 1 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|313122573|ref|YP_004044500.1| - 0.061 13.2 0.1 0.22 11.4 0.1 2.0 1 1 0 1 1 1 0 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|313122573|ref|YP_004044500.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) YqjK PF13997.1 gi|313122573|ref|YP_004044500.1| - 0.22 11.6 1.7 0.36 11.0 0.1 2.1 2 0 0 2 2 2 0 YqjK-like protein Phage_B PF02304.10 gi|313122573|ref|YP_004044500.1| - 1.3 9.3 3.3 2.9 8.2 2.2 1.7 1 1 1 2 2 2 0 Scaffold protein B Aldedh PF00171.17 gi|313122574|ref|YP_004044501.1| - 4.4e-172 572.5 0.2 5e-172 572.3 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TraB PF01963.12 gi|313122575|ref|YP_004044502.1| - 0.00051 19.5 0.4 0.95 8.8 0.0 3.6 3 1 0 4 4 4 2 TraB family DUF399 PF04187.8 gi|313122575|ref|YP_004044502.1| - 0.0041 16.6 1.8 0.043 13.3 0.1 2.6 2 1 1 3 3 3 1 Protein of unknown function, DUF399 TAT_signal PF10518.4 gi|313122575|ref|YP_004044502.1| - 0.052 13.5 1.8 0.095 12.7 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence IucA_IucC PF04183.7 gi|313122577|ref|YP_004044504.1| - 7.8e-51 172.7 0.0 1.2e-50 172.1 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|313122577|ref|YP_004044504.1| - 1.5e-32 112.7 0.0 8.4e-32 110.3 0.0 2.2 3 0 0 3 3 3 1 Ferric iron reductase FhuF-like transporter Mus7 PF09462.5 gi|313122577|ref|YP_004044504.1| - 0.03 13.1 0.0 0.041 12.7 0.0 1.1 1 0 0 1 1 1 0 Mus7/MMS22 family ABC_tran PF00005.22 gi|313122578|ref|YP_004044505.1| - 1.2e-34 119.5 0.0 2.4e-34 118.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|313122578|ref|YP_004044505.1| - 4e-33 114.9 1.0 5.1e-33 114.6 0.7 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.1 gi|313122578|ref|YP_004044505.1| - 1.6e-06 28.2 2.9 8e-06 25.9 2.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|313122578|ref|YP_004044505.1| - 1.1e-05 26.2 0.1 2.7e-05 24.9 0.1 1.8 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|313122578|ref|YP_004044505.1| - 8.2e-05 21.7 0.1 0.0002 20.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_21 PF13304.1 gi|313122578|ref|YP_004044505.1| - 0.00019 21.4 0.0 0.089 12.7 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|313122578|ref|YP_004044505.1| - 0.00044 20.5 0.1 0.0025 18.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313122578|ref|YP_004044505.1| - 0.00058 19.7 0.0 0.0024 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|313122578|ref|YP_004044505.1| - 0.0008 19.5 0.5 0.0072 16.4 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|313122578|ref|YP_004044505.1| - 0.00086 19.5 0.0 0.016 15.3 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313122578|ref|YP_004044505.1| - 0.0012 18.6 0.2 0.0091 15.7 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|313122578|ref|YP_004044505.1| - 0.0018 17.4 0.0 0.0034 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|313122578|ref|YP_004044505.1| - 0.0051 16.0 0.2 0.16 11.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.10 gi|313122578|ref|YP_004044505.1| - 0.0051 16.5 0.1 0.56 9.9 0.1 2.4 1 1 0 1 1 1 1 NTPase AAA_29 PF13555.1 gi|313122578|ref|YP_004044505.1| - 0.0079 15.7 0.0 0.021 14.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|313122578|ref|YP_004044505.1| - 0.008 15.7 2.2 0.059 12.9 1.3 2.3 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|313122578|ref|YP_004044505.1| - 0.017 14.8 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase T2SE PF00437.15 gi|313122578|ref|YP_004044505.1| - 0.027 13.3 0.0 0.22 10.3 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|313122578|ref|YP_004044505.1| - 0.032 13.8 0.0 1.7 8.3 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|313122578|ref|YP_004044505.1| - 0.032 13.9 0.1 0.1 12.3 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|313122578|ref|YP_004044505.1| - 0.036 13.4 3.0 0.14 11.5 2.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313122578|ref|YP_004044505.1| - 0.04 13.3 0.2 0.15 11.4 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|313122578|ref|YP_004044505.1| - 0.046 13.1 0.1 0.29 10.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|313122578|ref|YP_004044505.1| - 0.066 13.1 0.3 0.33 10.8 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.12 gi|313122578|ref|YP_004044505.1| - 0.067 12.9 0.3 0.15 11.8 0.1 1.7 2 0 0 2 2 1 0 Domain of unknown function DUF87 AAA_23 PF13476.1 gi|313122578|ref|YP_004044505.1| - 0.16 12.2 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain IucA_IucC PF04183.7 gi|313122580|ref|YP_004044507.1| - 9.7e-68 228.1 0.0 1.4e-67 227.6 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|313122580|ref|YP_004044507.1| - 1.8e-35 122.3 0.5 4.2e-35 121.1 0.3 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Gln-synt_C PF00120.19 gi|313122581|ref|YP_004044508.1| - 1.6e-70 237.2 0.0 2e-70 236.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|313122581|ref|YP_004044508.1| - 0.041 13.4 0.0 1.5 8.4 0.0 3.0 3 0 0 3 3 3 0 Glutamine synthetase, beta-Grasp domain Aminotran_3 PF00202.16 gi|313122582|ref|YP_004044509.1| - 8.8e-88 294.3 0.0 1.1e-87 294.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III HCR PF07111.7 gi|313122582|ref|YP_004044509.1| - 0.12 10.3 0.0 0.18 9.7 0.0 1.1 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) Pyridoxal_deC PF00282.14 gi|313122583|ref|YP_004044510.1| - 1.7e-62 211.0 0.0 2e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.16 gi|313122583|ref|YP_004044510.1| - 0.00011 21.5 0.1 0.00022 20.4 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|313122583|ref|YP_004044510.1| - 0.0004 19.2 0.0 0.00099 17.9 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V IucA_IucC PF04183.7 gi|313122584|ref|YP_004044511.1| - 4e-69 232.6 0.0 5.6e-69 232.1 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|313122584|ref|YP_004044511.1| - 3.1e-32 111.7 0.0 6e-32 110.8 0.0 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Methyltransf_6 PF03737.10 gi|313122585|ref|YP_004044512.1| - 1.4e-29 102.9 2.5 1.7e-29 102.6 1.7 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase PCP_red PF08369.5 gi|313122585|ref|YP_004044512.1| - 0.013 15.3 0.1 2.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit cobW PF02492.14 gi|313122585|ref|YP_004044512.1| - 0.052 12.9 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DDE_Tnp_1 PF01609.16 gi|313122586|ref|YP_004044513.1| - 1.2e-07 31.5 0.1 2.3e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain TRAPPC10 PF12584.3 gi|313122588|ref|YP_004044515.1| - 0.033 13.6 0.0 0.04 13.4 0.0 1.1 1 0 0 1 1 1 0 Trafficking protein particle complex subunit 10, TRAPPC10 RNA_pol_Rpb2_5 PF04567.12 gi|313122588|ref|YP_004044515.1| - 0.11 12.5 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 5 UCR_Fe-S_N PF10399.4 gi|313122589|ref|YP_004044516.1| - 0.077 12.1 0.0 0.19 10.9 0.0 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Cadherin PF00028.12 gi|313122590|ref|YP_004044517.1| - 0.00079 19.6 1.1 0.0013 18.9 0.7 1.3 1 0 0 1 1 1 1 Cadherin domain DUF1528 PF07515.6 gi|313122590|ref|YP_004044517.1| - 0.072 13.1 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1528) Trypsin PF00089.21 gi|313122592|ref|YP_004044519.1| - 0.00057 19.5 2.0 0.001 18.7 1.4 1.3 1 1 0 1 1 1 1 Trypsin PNPOx_C PF10590.4 gi|313122593|ref|YP_004044520.1| - 0.093 12.2 0.4 0.16 11.5 0.3 1.4 1 0 0 1 1 1 0 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MarR_2 PF12802.2 gi|313122594|ref|YP_004044521.1| - 1.2e-06 28.0 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313122594|ref|YP_004044521.1| - 8.6e-05 22.1 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|313122594|ref|YP_004044521.1| - 0.00041 19.7 0.0 0.00061 19.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR PF01047.17 gi|313122594|ref|YP_004044521.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|313122594|ref|YP_004044521.1| - 0.0018 18.0 0.0 0.0036 17.0 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|313122594|ref|YP_004044521.1| - 0.0018 17.6 0.1 0.0031 16.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|313122594|ref|YP_004044521.1| - 0.0026 17.0 0.0 0.0041 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.1 gi|313122594|ref|YP_004044521.1| - 0.0031 17.0 0.0 0.013 15.0 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.7 gi|313122594|ref|YP_004044521.1| - 0.007 15.8 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|313122594|ref|YP_004044521.1| - 0.0084 16.2 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|313122594|ref|YP_004044521.1| - 0.014 15.0 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|313122594|ref|YP_004044521.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|313122594|ref|YP_004044521.1| - 0.018 15.3 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PaaX PF07848.7 gi|313122594|ref|YP_004044521.1| - 0.021 14.8 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_20 PF12840.2 gi|313122594|ref|YP_004044521.1| - 0.023 14.4 0.1 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313122594|ref|YP_004044521.1| - 0.026 14.0 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|313122594|ref|YP_004044521.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2309 PF10070.4 gi|313122595|ref|YP_004044522.1| - 1.9e-251 836.5 0.0 3.4e-251 835.7 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF883 PF05957.8 gi|313122595|ref|YP_004044522.1| - 3.7 8.0 8.2 1.3 9.5 0.1 3.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Oxidored_q1 PF00361.15 gi|313122596|ref|YP_004044523.1| - 1.7e-26 93.0 8.3 1.7e-26 93.0 5.7 1.6 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Tetraspannin PF00335.15 gi|313122596|ref|YP_004044523.1| - 6.4 5.9 6.5 1.6 7.9 1.9 2.0 2 0 0 2 2 2 0 Tetraspanin family Oxidored_q1_N PF00662.15 gi|313122597|ref|YP_004044524.1| - 1e-08 34.6 0.6 1e-08 34.6 0.4 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF1212 PF06738.7 gi|313122597|ref|YP_004044524.1| - 0.21 11.0 10.0 0.03 13.7 4.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Amidohydro_1 PF01979.15 gi|313122599|ref|YP_004044526.1| - 2.7e-22 79.8 0.0 1.6e-20 74.0 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313122599|ref|YP_004044526.1| - 2e-08 34.6 8.4 3e-07 30.7 5.8 2.2 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|313122599|ref|YP_004044526.1| - 2.7e-08 33.1 0.0 3.9e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|313122599|ref|YP_004044526.1| - 2.2e-07 30.4 6.9 4.8e-07 29.3 1.2 2.5 1 1 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|313122599|ref|YP_004044526.1| - 1.1e-05 25.1 0.0 2.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase HTH_24 PF13412.1 gi|313122600|ref|YP_004044527.1| - 4.7e-16 57.9 0.1 7e-16 57.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313122600|ref|YP_004044527.1| - 6.5e-13 47.9 0.8 1.4e-12 46.9 0.5 1.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|313122600|ref|YP_004044527.1| - 1.1e-07 31.3 0.0 1.9e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|313122600|ref|YP_004044527.1| - 3.4e-06 26.6 0.0 7.8e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|313122600|ref|YP_004044527.1| - 5.9e-06 26.1 0.1 1.3e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|313122600|ref|YP_004044527.1| - 6.3e-06 25.6 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313122600|ref|YP_004044527.1| - 3e-05 23.7 0.0 7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|313122600|ref|YP_004044527.1| - 4.2e-05 23.5 0.0 0.00014 21.9 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|313122600|ref|YP_004044527.1| - 4.7e-05 22.7 0.0 8.5e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|313122600|ref|YP_004044527.1| - 8.7e-05 21.9 0.1 0.0015 18.0 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|313122600|ref|YP_004044527.1| - 0.00021 20.8 0.0 0.00038 20.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313122600|ref|YP_004044527.1| - 0.00049 20.3 0.1 0.0054 17.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|313122600|ref|YP_004044527.1| - 0.0012 18.7 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|313122600|ref|YP_004044527.1| - 0.0014 18.2 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|313122600|ref|YP_004044527.1| - 0.0036 16.9 0.0 0.012 15.3 0.0 1.8 2 0 0 2 2 2 1 MarR family GntR PF00392.16 gi|313122600|ref|YP_004044527.1| - 0.0062 15.9 0.0 0.017 14.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|313122600|ref|YP_004044527.1| - 0.0076 15.9 0.0 0.018 14.7 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|313122600|ref|YP_004044527.1| - 0.011 15.4 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.1 gi|313122600|ref|YP_004044527.1| - 0.011 14.8 0.0 0.027 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_12 PF08461.5 gi|313122600|ref|YP_004044527.1| - 0.019 14.6 0.1 0.064 12.9 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_10 PF04967.7 gi|313122600|ref|YP_004044527.1| - 0.032 13.7 0.1 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.1 gi|313122600|ref|YP_004044527.1| - 0.049 13.7 0.0 0.079 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|313122600|ref|YP_004044527.1| - 0.058 12.8 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2250 PF10007.4 gi|313122600|ref|YP_004044527.1| - 0.059 13.2 0.0 0.52 10.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|313122600|ref|YP_004044527.1| - 0.066 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|313122600|ref|YP_004044527.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|313122600|ref|YP_004044527.1| - 0.097 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|313122600|ref|YP_004044527.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_38 PF13936.1 gi|313122600|ref|YP_004044527.1| - 0.13 11.7 0.1 0.29 10.7 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Peripla_BP_2 PF01497.13 gi|313122601|ref|YP_004044528.1| - 6.7e-10 38.4 0.3 1.4e-09 37.4 0.2 1.6 1 1 0 1 1 1 1 Periplasmic binding protein TauE PF01925.14 gi|313122602|ref|YP_004044529.1| - 2.1e-38 132.1 39.5 2.5e-38 131.8 27.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CBS PF00571.23 gi|313122603|ref|YP_004044530.1| - 2e-10 40.3 2.6 4.4e-06 26.3 0.0 2.7 2 1 0 2 2 2 2 CBS domain LTD PF00932.14 gi|313122605|ref|YP_004044532.1| - 0.015 15.4 0.0 0.025 14.6 0.0 1.3 1 0 0 1 1 1 0 Lamin Tail Domain Halogen_Hydrol PF10112.4 gi|313122605|ref|YP_004044532.1| - 0.38 10.1 4.6 0.1 11.9 0.2 2.1 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein TctB PF07331.6 gi|313122605|ref|YP_004044532.1| - 0.4 10.3 18.4 1.1 8.8 2.9 2.5 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF4131 PF13567.1 gi|313122605|ref|YP_004044532.1| - 0.58 9.5 11.6 4.1 6.7 3.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF4418 PF14387.1 gi|313122605|ref|YP_004044532.1| - 2.7 7.7 6.3 1.9 8.2 2.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) LysM PF01476.15 gi|313122607|ref|YP_004044534.1| - 2.4e-09 36.9 0.0 6.3e-09 35.5 0.0 1.8 1 0 0 1 1 1 1 LysM domain Phage_GPD PF05954.6 gi|313122608|ref|YP_004044535.1| - 1.3e-21 77.1 0.3 1.5e-21 76.8 0.2 1.1 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Phage-tail_3 PF13550.1 gi|313122608|ref|YP_004044535.1| - 0.04 13.6 0.0 0.089 12.5 0.0 1.7 2 0 0 2 2 2 0 Putative phage tail protein Phage_base_V PF04717.7 gi|313122609|ref|YP_004044536.1| - 1.1e-20 73.3 0.0 2.5e-20 72.1 0.0 1.6 1 0 0 1 1 1 1 Phage-related baseplate assembly protein DUF2345 PF10106.4 gi|313122609|ref|YP_004044536.1| - 0.0015 18.1 2.2 0.0015 18.1 1.5 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2345) DUF3540 PF12059.3 gi|313122609|ref|YP_004044536.1| - 0.002 17.8 0.1 1.5 8.3 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF3540) Sarcoglycan_1 PF04790.8 gi|313122609|ref|YP_004044536.1| - 0.0035 16.5 6.9 0.029 13.5 0.5 2.7 1 1 2 3 3 3 2 Sarcoglycan complex subunit protein Pilus_CpaD PF09476.5 gi|313122609|ref|YP_004044536.1| - 0.048 13.1 0.2 0.072 12.5 0.2 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) YabP PF07873.6 gi|313122609|ref|YP_004044536.1| - 0.12 11.8 0.7 0.6 9.7 0.3 2.3 2 1 0 2 2 2 0 YabP family PAAR_motif PF05488.8 gi|313122610|ref|YP_004044537.1| - 2.9e-25 88.0 11.0 6.4e-14 51.6 0.8 3.0 1 1 2 3 3 3 3 PAAR motif DUF4150 PF13665.1 gi|313122610|ref|YP_004044537.1| - 9.8e-06 25.4 0.0 0.028 14.3 0.0 2.7 1 1 2 3 3 3 2 Domain of unknown function (DUF4150) D-aminoacyl_C PF07908.7 gi|313122610|ref|YP_004044537.1| - 0.0013 17.9 0.4 0.58 9.5 0.0 2.3 2 0 0 2 2 2 2 D-aminoacylase, C-terminal region GPW_gp25 PF04965.9 gi|313122611|ref|YP_004044538.1| - 1.4e-21 75.9 0.1 1.6e-21 75.6 0.1 1.0 1 0 0 1 1 1 1 Gene 25-like lysozyme Baseplate_J PF04865.9 gi|313122612|ref|YP_004044539.1| - 1.6e-16 60.4 0.5 6.4e-15 55.1 0.2 2.3 2 0 0 2 2 2 2 Baseplate J-like protein Baseplate_J PF04865.9 gi|313122613|ref|YP_004044540.1| - 3.7e-16 59.1 3.9 1.4e-13 50.8 1.9 2.3 2 0 0 2 2 2 2 Baseplate J-like protein Tail_P2_I PF09684.5 gi|313122614|ref|YP_004044541.1| - 2.8e-05 23.7 0.0 5.9e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Phage tail protein (Tail_P2_I) HHH_5 PF14520.1 gi|313122614|ref|YP_004044541.1| - 0.021 14.9 0.0 0.052 13.7 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain Tachylectin PF14517.1 gi|313122614|ref|YP_004044541.1| - 0.11 11.8 0.0 0.3 10.3 0.0 1.7 2 0 0 2 2 2 0 Tachylectin PQQ_3 PF13570.1 gi|313122614|ref|YP_004044541.1| - 0.26 11.6 12.4 2.7 8.3 0.5 5.4 5 1 1 6 6 6 0 PQQ-like domain DUF4157 PF13699.1 gi|313122615|ref|YP_004044542.1| - 2.5e-29 101.2 4.5 4.7e-29 100.3 1.9 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|313122615|ref|YP_004044542.1| - 0.2 11.7 1.8 1.8 8.6 0.1 2.6 3 0 0 3 3 3 0 Peptidase MA superfamily Atg14 PF10186.4 gi|313122615|ref|YP_004044542.1| - 0.37 9.6 4.8 0.83 8.5 3.3 1.5 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|313122615|ref|YP_004044542.1| - 0.37 10.3 6.7 0.78 9.3 4.6 1.5 1 0 0 1 1 1 0 IncA protein ApoL PF05461.6 gi|313122615|ref|YP_004044542.1| - 5.3 6.2 8.9 6 6.0 3.3 2.4 3 0 0 3 3 3 0 Apolipoprotein L DUF4157 PF13699.1 gi|313122617|ref|YP_004044544.1| - 1.8e-17 63.2 1.7 4.3e-17 62.0 1.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) RD3 PF14473.1 gi|313122617|ref|YP_004044544.1| - 0.063 12.7 0.1 0.19 11.2 0.1 1.8 2 0 0 2 2 2 0 RD3 protein KCNQ_channel PF03520.9 gi|313122617|ref|YP_004044544.1| - 0.066 12.5 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 KCNQ voltage-gated potassium channel M16C_assoc PF08367.6 gi|313122617|ref|YP_004044544.1| - 0.089 11.6 4.8 0.18 10.6 3.4 1.5 1 0 0 1 1 1 0 Peptidase M16C associated RHH_1 PF01402.16 gi|313122617|ref|YP_004044544.1| - 1.1 9.2 0.0 1.1 9.2 0.0 3.1 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Mst1_SARAH PF11629.3 gi|313122617|ref|YP_004044544.1| - 5.1 6.9 7.5 1 9.2 0.8 2.5 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 Dict-STAT-coil PF09267.5 gi|313122619|ref|YP_004044546.1| - 0.069 13.3 3.3 0.073 13.2 0.5 2.0 2 0 0 2 2 2 0 Dictyostelium STAT, coiled coil GvpL_GvpF PF06386.6 gi|313122619|ref|YP_004044546.1| - 0.33 10.5 8.9 0.54 9.8 0.7 2.6 1 1 1 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF CCDC-167 PF15188.1 gi|313122619|ref|YP_004044546.1| - 0.54 10.2 3.5 1.1 9.3 0.7 2.7 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 DUF4157 PF13699.1 gi|313122621|ref|YP_004044548.1| - 1.2e-05 25.3 1.5 1.9e-05 24.7 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.1 gi|313122621|ref|YP_004044548.1| - 0.097 12.7 0.2 0.1 12.6 0.2 1.1 1 0 0 1 1 1 0 Effector protein ArsA_ATPase PF02374.10 gi|313122622|ref|YP_004044549.1| - 6e-71 238.9 0.0 6.7e-71 238.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|313122622|ref|YP_004044549.1| - 7.2e-10 38.5 0.0 6.5e-08 32.2 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313122622|ref|YP_004044549.1| - 7.3e-06 25.9 0.0 2.1e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|313122622|ref|YP_004044549.1| - 0.0097 15.3 3.5 0.033 13.5 1.2 2.6 1 1 1 2 2 2 1 AAA domain ParA PF10609.4 gi|313122622|ref|YP_004044549.1| - 0.018 14.9 0.0 0.046 13.5 0.0 1.7 2 0 0 2 2 2 0 ParA/MinD ATPase like YhjQ PF06564.7 gi|313122622|ref|YP_004044549.1| - 0.027 13.8 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein PhoH PF02562.11 gi|313122622|ref|YP_004044549.1| - 0.036 13.3 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_16 PF13191.1 gi|313122622|ref|YP_004044549.1| - 0.05 13.5 0.2 0.11 12.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Fer4_NifH PF00142.13 gi|313122622|ref|YP_004044549.1| - 0.093 11.8 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|313122622|ref|YP_004044549.1| - 0.13 11.6 0.0 0.28 10.5 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|313122622|ref|YP_004044549.1| - 1.2 9.0 3.7 33 4.3 2.6 3.0 1 1 0 1 1 1 0 AAA domain Rab5-bind PF09311.6 gi|313122624|ref|YP_004044551.1| - 0.11 12.3 4.6 4.3 7.1 3.2 2.5 1 1 0 1 1 1 0 Rabaptin-like protein Pro-kuma_activ PF09286.6 gi|313122624|ref|YP_004044551.1| - 0.11 12.5 0.0 43 4.1 0.0 3.5 4 0 0 4 4 4 0 Pro-kumamolisin, activation domain TBPIP PF07106.8 gi|313122624|ref|YP_004044551.1| - 0.2 11.2 2.1 0.19 11.2 0.4 1.7 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|313122624|ref|YP_004044551.1| - 0.28 11.4 3.6 22 5.3 2.5 3.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein FliJ PF02050.11 gi|313122624|ref|YP_004044551.1| - 0.31 11.1 5.5 0.28 11.2 1.2 2.6 3 0 0 3 3 3 0 Flagellar FliJ protein Phage_sheath_1 PF04984.9 gi|313122625|ref|YP_004044552.1| - 2.4e-77 260.3 0.0 2e-76 257.3 0.0 1.9 1 1 0 1 1 1 1 Phage tail sheath protein Phage_T4_gp19 PF06841.7 gi|313122626|ref|YP_004044553.1| - 2e-21 76.0 0.0 2.2e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Nbs1_C PF08599.5 gi|313122626|ref|YP_004044553.1| - 0.077 12.9 0.2 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 DNA damage repair protein Nbs1 FYDLN_acid PF09538.5 gi|313122628|ref|YP_004044555.1| - 0.064 13.8 2.3 0.096 13.2 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Phage_T4_gp19 PF06841.7 gi|313122630|ref|YP_004044557.1| - 2.8e-35 120.8 0.1 3.2e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 DUF4255 PF14065.1 gi|313122631|ref|YP_004044558.1| - 1e-28 99.9 0.0 1.2e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) AAA PF00004.24 gi|313122632|ref|YP_004044559.1| - 3e-30 105.1 0.0 1.2e-28 99.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|313122632|ref|YP_004044559.1| - 3.6e-05 24.5 0.1 0.00089 20.0 0.0 3.2 3 2 1 4 4 3 1 AAA domain Zot PF05707.7 gi|313122632|ref|YP_004044559.1| - 0.00023 20.6 0.5 0.0037 16.7 0.4 2.2 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|313122632|ref|YP_004044559.1| - 0.00089 19.3 1.9 0.056 13.5 0.3 3.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|313122632|ref|YP_004044559.1| - 0.0016 18.2 0.0 0.076 12.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|313122632|ref|YP_004044559.1| - 0.0019 18.1 0.1 0.0036 17.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|313122632|ref|YP_004044559.1| - 0.0029 16.4 0.0 0.0062 15.3 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus Cytidylate_kin2 PF13189.1 gi|313122632|ref|YP_004044559.1| - 0.0046 16.8 0.1 0.0098 15.8 0.1 1.5 1 0 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|313122632|ref|YP_004044559.1| - 0.0068 16.7 0.0 0.024 14.9 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|313122632|ref|YP_004044559.1| - 0.012 15.4 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313122632|ref|YP_004044559.1| - 0.017 15.2 0.0 0.13 12.4 0.0 2.4 3 0 0 3 3 3 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|313122632|ref|YP_004044559.1| - 0.027 14.5 0.0 12 5.9 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|313122632|ref|YP_004044559.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4157 PF13699.1 gi|313122633|ref|YP_004044560.1| - 2.8e-30 104.2 1.4 1.1e-29 102.4 1.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF3899 PF13038.1 gi|313122633|ref|YP_004044560.1| - 2.5 8.3 4.1 0.74 10.0 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) Plug PF07715.10 gi|313122634|ref|YP_004044561.1| - 0.0076 16.5 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 TonB-dependent Receptor Plug Domain Laminin_I PF06008.9 gi|313122635|ref|YP_004044562.1| - 0.0017 17.7 5.0 0.0032 16.8 3.5 1.4 1 0 0 1 1 1 1 Laminin Domain I TBPIP PF07106.8 gi|313122635|ref|YP_004044562.1| - 0.0047 16.4 4.9 0.0091 15.5 3.4 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|313122635|ref|YP_004044562.1| - 0.0047 16.5 2.4 0.0094 15.5 1.7 1.5 1 0 0 1 1 1 1 IncA protein HOOK PF05622.7 gi|313122635|ref|YP_004044562.1| - 0.01 13.6 6.9 0.015 13.1 4.8 1.1 1 0 0 1 1 1 0 HOOK protein Bacillus_HBL PF05791.6 gi|313122635|ref|YP_004044562.1| - 0.011 15.1 5.1 0.019 14.3 3.5 1.3 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Fmp27_WPPW PF10359.4 gi|313122635|ref|YP_004044562.1| - 0.014 13.8 6.0 0.024 13.0 4.2 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1664 PF07889.7 gi|313122635|ref|YP_004044562.1| - 0.025 14.3 2.4 0.053 13.3 1.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Vac_Fusion PF02346.11 gi|313122635|ref|YP_004044562.1| - 0.054 12.9 2.2 1.2 8.5 0.1 2.6 1 1 1 2 2 2 0 Chordopoxvirus fusion protein DUF812 PF05667.6 gi|313122635|ref|YP_004044562.1| - 0.057 11.9 4.7 0.076 11.5 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) COG2 PF06148.6 gi|313122635|ref|YP_004044562.1| - 0.057 13.2 2.1 0.11 12.3 1.5 1.5 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 XhlA PF10779.4 gi|313122635|ref|YP_004044562.1| - 0.068 13.0 16.6 2 8.3 3.7 3.4 2 1 1 3 3 3 0 Haemolysin XhlA Occludin_ELL PF07303.8 gi|313122635|ref|YP_004044562.1| - 0.082 13.6 1.4 0.16 12.6 1.0 1.5 1 0 0 1 1 1 0 Occludin homology domain V_ATPase_I PF01496.14 gi|313122635|ref|YP_004044562.1| - 0.088 10.6 2.9 0.12 10.1 2.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Cauli_AT PF03233.8 gi|313122635|ref|YP_004044562.1| - 0.09 12.4 2.5 0.16 11.6 1.7 1.4 1 0 0 1 1 1 0 Aphid transmission protein PP_kinase_N PF13089.1 gi|313122635|ref|YP_004044562.1| - 0.19 11.8 1.8 0.39 10.8 1.2 1.5 1 0 0 1 1 1 0 Polyphosphate kinase N-terminal domain TMPIT PF07851.8 gi|313122635|ref|YP_004044562.1| - 0.21 10.5 1.6 0.3 10.0 1.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein GLE1 PF07817.8 gi|313122635|ref|YP_004044562.1| - 0.27 10.1 2.2 0.41 9.5 1.5 1.2 1 0 0 1 1 1 0 GLE1-like protein Phage_GPO PF05929.6 gi|313122635|ref|YP_004044562.1| - 0.29 10.3 6.9 0.097 11.9 2.5 1.7 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase COG5 PF10392.4 gi|313122635|ref|YP_004044562.1| - 0.34 10.8 4.2 0.68 9.8 2.9 1.5 1 0 0 1 1 1 0 Golgi transport complex subunit 5 SlyX PF04102.7 gi|313122635|ref|YP_004044562.1| - 0.35 11.2 7.7 3.2 8.1 0.4 2.6 1 1 1 2 2 2 0 SlyX TMF_DNA_bd PF12329.3 gi|313122635|ref|YP_004044562.1| - 0.78 9.5 17.2 1.8 8.4 4.3 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF2580 PF10824.3 gi|313122635|ref|YP_004044562.1| - 1 9.7 8.8 3.2 8.1 0.9 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2580) DUF607 PF04678.8 gi|313122635|ref|YP_004044562.1| - 1 9.2 4.1 20 5.0 2.9 2.3 1 1 0 1 1 1 0 Protein of unknown function, DUF607 FemAB PF02388.11 gi|313122635|ref|YP_004044562.1| - 1.1 7.9 5.0 1.6 7.3 3.4 1.2 1 0 0 1 1 1 0 FemAB family NPV_P10 PF05531.7 gi|313122635|ref|YP_004044562.1| - 1.1 9.5 5.5 1.7 8.9 2.7 2.1 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein MIF4G_like_2 PF09090.6 gi|313122635|ref|YP_004044562.1| - 1.2 8.2 7.0 0.47 9.6 2.7 1.7 2 0 0 2 2 2 0 MIF4G like DUF4407 PF14362.1 gi|313122635|ref|YP_004044562.1| - 2.1 7.2 11.6 2.4 7.0 7.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1840 PF08895.6 gi|313122635|ref|YP_004044562.1| - 2.2 8.3 6.5 1.6 8.7 2.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) DUF948 PF06103.6 gi|313122635|ref|YP_004044562.1| - 2.4 8.0 5.1 7.3 6.5 3.6 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF3552 PF12072.3 gi|313122635|ref|YP_004044562.1| - 3.5 6.7 12.6 6.9 5.8 8.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) Sugarporin_N PF11471.3 gi|313122635|ref|YP_004044562.1| - 3.7 7.2 9.1 0.58 9.8 2.4 2.4 1 1 1 2 2 2 0 Maltoporin periplasmic N-terminal extension UPF0449 PF15136.1 gi|313122635|ref|YP_004044562.1| - 4 7.6 6.7 4.8 7.4 2.1 2.3 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 BTV_NS2 PF04514.7 gi|313122635|ref|YP_004044562.1| - 6.8 5.4 10.0 0.5 9.2 2.9 1.8 2 0 0 2 2 2 0 Bluetongue virus non-structural protein NS2 Packaging_FI PF14000.1 gi|313122635|ref|YP_004044562.1| - 8.7 6.5 12.5 0.44 10.7 3.6 2.4 2 0 0 2 2 2 0 DNA packaging protein FI ABC_tran PF00005.22 gi|313122639|ref|YP_004044566.1| - 2.5e-23 82.8 0.0 4.1e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122639|ref|YP_004044566.1| - 7.7e-11 42.4 0.0 5.8e-07 29.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|313122639|ref|YP_004044566.1| - 0.0017 17.8 0.1 0.044 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|313122639|ref|YP_004044566.1| - 0.0027 17.3 0.0 0.01 15.5 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|313122639|ref|YP_004044566.1| - 0.0051 16.4 0.0 0.21 11.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|313122639|ref|YP_004044566.1| - 0.0059 17.0 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.17 gi|313122639|ref|YP_004044566.1| - 0.0079 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|313122639|ref|YP_004044566.1| - 0.0097 14.7 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_29 PF13555.1 gi|313122639|ref|YP_004044566.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313122639|ref|YP_004044566.1| - 0.077 13.3 0.0 0.081 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|313122639|ref|YP_004044566.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SMC_N PF02463.14 gi|313122639|ref|YP_004044566.1| - 0.13 11.4 0.0 7.2 5.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.2 gi|313122640|ref|YP_004044567.1| - 9.2e-17 60.7 16.4 1.2e-16 60.3 11.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313122640|ref|YP_004044567.1| - 1.8e-07 30.6 26.0 3.1e-07 29.8 18.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313122640|ref|YP_004044567.1| - 0.00028 20.0 17.2 0.00038 19.6 11.9 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313122640|ref|YP_004044567.1| - 0.0032 16.7 14.5 0.0032 16.7 10.1 1.8 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313122641|ref|YP_004044568.1| - 2e-16 59.7 14.4 2.6e-16 59.2 10.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313122641|ref|YP_004044568.1| - 6.1e-13 48.4 18.4 7.2e-13 48.2 12.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313122641|ref|YP_004044568.1| - 7.3e-06 25.4 3.9 1.2e-05 24.7 2.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Peptidase_S8 PF00082.17 gi|313122643|ref|YP_004044570.1| - 6.2e-20 71.4 0.0 8.1e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 Subtilase family HNF-1_N PF04814.8 gi|313122644|ref|YP_004044571.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus DDE_Tnp_1 PF01609.16 gi|313122645|ref|YP_004044572.1| - 2.7e-10 40.1 2.5 5.5e-10 39.1 1.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|313122645|ref|YP_004044572.1| - 0.00043 20.4 1.4 0.001 19.1 1.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|313122645|ref|YP_004044572.1| - 0.00061 19.5 0.0 0.00073 19.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|313122645|ref|YP_004044572.1| - 0.0028 17.6 0.2 0.0032 17.4 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain GDE_N PF12439.3 gi|313122645|ref|YP_004044572.1| - 0.13 11.4 0.3 0.17 11.1 0.2 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme N terminal Prominin PF05478.6 gi|313122646|ref|YP_004044573.1| - 0.039 11.4 2.5 0.038 11.5 1.7 1.0 1 0 0 1 1 1 0 Prominin YtpI PF14007.1 gi|313122646|ref|YP_004044573.1| - 0.061 13.2 5.8 0.15 11.9 3.8 1.8 1 1 1 2 2 2 0 YtpI-like protein MFS_1 PF07690.11 gi|313122646|ref|YP_004044573.1| - 0.11 11.1 6.9 0.14 10.8 4.8 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily OCIA PF07051.6 gi|313122646|ref|YP_004044573.1| - 0.2 11.0 0.7 0.25 10.7 0.2 1.4 1 1 0 1 1 1 0 Ovarian carcinoma immunoreactive antigen (OCIA) Choline_transpo PF04515.7 gi|313122646|ref|YP_004044573.1| - 0.23 10.1 4.4 0.26 10.0 3.0 1.0 1 0 0 1 1 1 0 Plasma-membrane choline transporter DUF1201 PF06716.6 gi|313122646|ref|YP_004044573.1| - 0.39 10.5 0.1 0.39 10.5 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1201) Orai-1 PF07856.7 gi|313122646|ref|YP_004044573.1| - 0.52 9.8 3.8 0.62 9.5 2.7 1.3 1 1 0 1 1 1 0 Mediator of CRAC channel activity DsbD_2 PF13386.1 gi|313122646|ref|YP_004044573.1| - 1 9.0 6.6 0.52 10.0 0.6 2.0 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF1700 PF08006.6 gi|313122646|ref|YP_004044573.1| - 1.4 8.2 4.7 2.1 7.6 3.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) DUF3040 PF11239.3 gi|313122646|ref|YP_004044573.1| - 2 8.5 6.6 2.1 8.4 4.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) FixQ PF05545.6 gi|313122646|ref|YP_004044573.1| - 6.3 6.5 7.6 0.73 9.5 0.3 2.3 2 1 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ ABC2_membrane_2 PF12679.2 gi|313122647|ref|YP_004044574.1| - 5.9e-30 104.0 34.6 1.8e-16 59.8 8.3 3.1 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313122647|ref|YP_004044574.1| - 5.7e-12 45.2 39.4 1.1e-07 31.2 8.7 3.3 2 2 1 3 3 3 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313122647|ref|YP_004044574.1| - 3.1e-10 39.6 40.9 9.3e-07 28.1 8.8 2.4 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313122648|ref|YP_004044575.1| - 1.8e-25 89.8 0.0 2.7e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313122648|ref|YP_004044575.1| - 2e-12 47.6 0.0 6.6e-08 32.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313122648|ref|YP_004044575.1| - 0.002 17.6 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313122648|ref|YP_004044575.1| - 0.014 15.7 0.0 0.022 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|313122648|ref|YP_004044575.1| - 0.02 15.4 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) ArgK PF03308.11 gi|313122648|ref|YP_004044575.1| - 0.035 12.8 0.0 0.056 12.2 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|313122648|ref|YP_004044575.1| - 0.049 13.0 0.0 0.36 10.2 0.0 1.9 1 1 1 2 2 2 0 AAA-like domain Transcrip_reg PF01709.15 gi|313122648|ref|YP_004044575.1| - 0.057 12.5 0.0 0.086 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator BCA_ABC_TP_C PF12399.3 gi|313122648|ref|YP_004044575.1| - 0.065 12.9 0.2 0.57 9.9 0.0 2.3 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter SbcCD_C PF13558.1 gi|313122648|ref|YP_004044575.1| - 0.07 13.0 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|313122648|ref|YP_004044575.1| - 0.072 12.3 0.0 2.7 7.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|313122648|ref|YP_004044575.1| - 0.08 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|313122648|ref|YP_004044575.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DDE_Tnp_1 PF01609.16 gi|313122651|ref|YP_004044578.1| - 2.6e-05 23.8 0.0 2.7e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain Na_K-ATPase PF00287.13 gi|313122651|ref|YP_004044578.1| - 0.034 12.9 0.0 0.038 12.7 0.0 1.1 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain CbiA PF01656.18 gi|313122652|ref|YP_004044579.1| - 1.5e-19 70.1 0.0 2e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313122652|ref|YP_004044579.1| - 6.4e-06 26.1 0.1 2e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|313122652|ref|YP_004044579.1| - 4.5e-05 22.6 0.0 0.00053 19.1 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|313122652|ref|YP_004044579.1| - 0.00029 19.9 0.0 0.00049 19.2 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|313122652|ref|YP_004044579.1| - 0.0054 16.1 0.0 0.014 14.7 0.0 1.7 2 0 0 2 2 2 1 YhjQ protein Fer4_NifH PF00142.13 gi|313122652|ref|YP_004044579.1| - 0.13 11.4 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family XAP5 PF04921.9 gi|313122653|ref|YP_004044580.1| - 0.24 10.9 3.6 0.32 10.5 2.5 1.3 1 0 0 1 1 1 0 XAP5, circadian clock regulator YqfQ PF14181.1 gi|313122653|ref|YP_004044580.1| - 4.2 7.3 6.9 7 6.6 4.8 1.3 1 0 0 1 1 1 0 YqfQ-like protein FUSC_2 PF13515.1 gi|313122654|ref|YP_004044581.1| - 0.02 14.8 5.7 0.03 14.2 4.0 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein-like Bax1-I PF01027.15 gi|313122654|ref|YP_004044581.1| - 0.047 13.2 3.9 0.056 13.0 2.7 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 UPF0220 PF05255.6 gi|313122654|ref|YP_004044581.1| - 0.11 11.6 1.3 3.5 6.8 0.1 2.2 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0220) PRA1 PF03208.14 gi|313122654|ref|YP_004044581.1| - 0.18 11.1 1.6 0.25 10.6 1.1 1.3 1 0 0 1 1 1 0 PRA1 family protein DUF1109 PF06532.6 gi|313122654|ref|YP_004044581.1| - 0.45 9.8 7.2 0.13 11.6 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1109) DUF202 PF02656.10 gi|313122654|ref|YP_004044581.1| - 1.1 9.4 12.7 24 5.2 8.8 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4234 PF14018.1 gi|313122654|ref|YP_004044581.1| - 3.9 7.2 5.5 1 9.1 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) DUF4131 PF13567.1 gi|313122654|ref|YP_004044581.1| - 5 6.4 10.2 0.87 8.9 4.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Rick_17kDa_Anti PF05433.10 gi|313122655|ref|YP_004044582.1| - 0.044 13.4 12.1 0.12 12.0 8.4 1.7 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.1 gi|313122655|ref|YP_004044582.1| - 0.093 12.3 10.7 0.27 10.9 7.4 1.8 1 0 0 1 1 1 0 Glycine zipper OPT PF03169.10 gi|313122657|ref|YP_004044584.1| - 0.1 10.9 1.2 0.12 10.7 0.9 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein Tmemb_cc2 PF10267.4 gi|313122657|ref|YP_004044584.1| - 0.12 10.9 1.4 0.14 10.7 1.0 1.0 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Gpi16 PF04113.9 gi|313122658|ref|YP_004044585.1| - 0.081 10.9 1.9 0.082 10.9 1.3 1.0 1 0 0 1 1 1 0 Gpi16 subunit, GPI transamidase component MARVEL PF01284.18 gi|313122658|ref|YP_004044585.1| - 0.098 12.4 1.3 0.11 12.3 0.9 1.0 1 0 0 1 1 1 0 Membrane-associating domain DoxX PF07681.7 gi|313122659|ref|YP_004044586.1| - 4.9e-11 42.9 11.0 4.9e-11 42.9 7.7 1.7 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|313122659|ref|YP_004044586.1| - 0.00093 19.0 1.5 0.001 18.9 0.3 1.6 1 1 1 2 2 2 1 HR-like lesion-inducing Fe-ADH PF00465.14 gi|313122660|ref|YP_004044587.1| - 1.2e-60 205.1 0.8 1.3e-60 204.9 0.6 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|313122660|ref|YP_004044587.1| - 7.1e-13 48.4 0.1 4.2e-08 32.8 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase MR_MLE_C PF13378.1 gi|313122661|ref|YP_004044588.1| - 0.0059 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|313122661|ref|YP_004044588.1| - 0.15 10.9 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Isochorismatase PF00857.15 gi|313122662|ref|YP_004044589.1| - 9e-30 103.8 0.2 2e-29 102.7 0.1 1.6 1 1 0 1 1 1 1 Isochorismatase family TK PF00265.13 gi|313122662|ref|YP_004044589.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Thymidine kinase Fer4_19 PF06902.6 gi|313122663|ref|YP_004044590.1| - 3.4e-24 84.4 0.0 6.7e-24 83.4 0.0 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.5 gi|313122663|ref|YP_004044590.1| - 6.4e-23 80.3 3.0 1e-11 44.4 0.0 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_15 PF13459.1 gi|313122663|ref|YP_004044590.1| - 0.035 14.6 0.3 0.13 12.8 0.2 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|313122663|ref|YP_004044590.1| - 1.9 8.5 5.3 1.1 9.2 0.2 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Isochorismatase PF00857.15 gi|313122664|ref|YP_004044591.1| - 2e-25 89.7 0.0 3.3e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Isochorismatase family HxlR PF01638.12 gi|313122665|ref|YP_004044592.1| - 1.5e-20 72.5 0.0 1.9e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|313122665|ref|YP_004044592.1| - 8.5e-07 29.2 0.1 1.3e-06 28.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313122665|ref|YP_004044592.1| - 3.2e-05 23.8 0.0 4.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|313122665|ref|YP_004044592.1| - 5.7e-05 22.7 0.1 8.4e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313122665|ref|YP_004044592.1| - 0.0061 16.2 0.2 0.011 15.4 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|313122665|ref|YP_004044592.1| - 0.0077 15.9 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|313122665|ref|YP_004044592.1| - 0.019 14.6 0.1 0.032 13.9 0.1 1.5 1 1 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|313122665|ref|YP_004044592.1| - 0.026 14.1 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|313122665|ref|YP_004044592.1| - 0.062 13.0 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator Replic_Relax PF13814.1 gi|313122665|ref|YP_004044592.1| - 0.073 12.9 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Trp_repressor PF01371.14 gi|313122665|ref|YP_004044592.1| - 0.084 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein HTH_11 PF08279.7 gi|313122665|ref|YP_004044592.1| - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain Glyoxalase PF00903.20 gi|313122666|ref|YP_004044593.1| - 1.4e-11 44.5 0.4 1.8e-11 44.1 0.3 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313122666|ref|YP_004044593.1| - 1.3e-08 34.8 0.0 2.2e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|313122666|ref|YP_004044593.1| - 7.6e-06 26.4 0.0 1.4e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313122667|ref|YP_004044594.1| - 1.3e-32 112.4 1.3 1.3e-17 63.9 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|313122667|ref|YP_004044594.1| - 5.1e-14 52.7 0.7 3e-07 31.0 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|313122667|ref|YP_004044594.1| - 0.0001 22.2 0.4 0.43 10.6 0.0 3.2 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YcfA PF07927.7 gi|313122667|ref|YP_004044594.1| - 0.085 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 YcfA-like protein Abhydrolase_2 PF02230.11 gi|313122668|ref|YP_004044595.1| - 1.5e-22 80.1 0.0 1.2e-21 77.1 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|313122668|ref|YP_004044595.1| - 1.3e-13 50.9 0.2 1.5e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|313122668|ref|YP_004044595.1| - 7.2e-13 48.9 4.5 2.9e-10 40.4 2.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|313122668|ref|YP_004044595.1| - 8.9e-07 28.4 0.0 1.3e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|313122668|ref|YP_004044595.1| - 0.00017 21.2 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|313122668|ref|YP_004044595.1| - 0.017 14.9 0.1 0.05 13.4 0.0 1.8 2 0 0 2 2 2 0 Putative lysophospholipase NUDIX-like PF09296.6 gi|313122668|ref|YP_004044595.1| - 0.022 15.0 0.0 0.41 11.0 0.0 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain FSH1 PF03959.8 gi|313122668|ref|YP_004044595.1| - 0.13 11.7 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DUF2326 PF10088.4 gi|313122668|ref|YP_004044595.1| - 0.14 11.7 0.1 0.57 9.8 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2326) CoA_binding_2 PF13380.1 gi|313122669|ref|YP_004044596.1| - 6.9e-37 126.1 0.3 8e-37 125.9 0.2 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|313122669|ref|YP_004044596.1| - 8.5e-06 26.1 0.0 1.3e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain Eno-Rase_NADH_b PF12242.3 gi|313122669|ref|YP_004044596.1| - 0.044 13.5 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF77 PF01910.12 gi|313122670|ref|YP_004044597.1| - 5.8e-21 73.9 0.4 6.6e-21 73.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Usp PF00582.21 gi|313122671|ref|YP_004044598.1| - 6.8e-61 204.5 2.8 6.1e-33 113.9 0.4 2.0 2 0 0 2 2 2 2 Universal stress protein family MGS PF02142.17 gi|313122671|ref|YP_004044598.1| - 0.00093 19.0 0.1 0.0031 17.4 0.0 1.9 2 0 0 2 2 2 1 MGS-like domain AA_permease_2 PF13520.1 gi|313122673|ref|YP_004044600.1| - 7.8e-33 113.6 41.5 1.1e-32 113.2 28.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|313122673|ref|YP_004044600.1| - 6.8e-23 80.7 35.9 9.5e-23 80.2 24.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|313122673|ref|YP_004044600.1| - 3.7e-06 27.1 1.2 0.0021 18.2 0.1 2.3 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|313122673|ref|YP_004044600.1| - 4.6e-05 23.2 5.0 4.6e-05 23.2 3.4 2.4 2 0 0 2 2 2 1 C-terminus of AA_permease UPF0233 PF06781.7 gi|313122673|ref|YP_004044600.1| - 1.4 8.5 3.4 0.73 9.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) DUF318 PF03773.8 gi|313122674|ref|YP_004044601.1| - 6e-51 173.2 10.3 8.1e-51 172.8 7.1 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.8 gi|313122674|ref|YP_004044601.1| - 8e-05 22.4 0.1 0.00015 21.4 0.1 1.5 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|313122674|ref|YP_004044601.1| - 0.016 14.8 0.2 0.029 14.0 0.1 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|313122674|ref|YP_004044601.1| - 0.036 13.8 0.1 0.036 13.8 0.0 2.7 4 0 0 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NAPRTase PF04095.11 gi|313122675|ref|YP_004044602.1| - 9.8e-18 64.3 0.0 1.8e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family QRPTase_C PF01729.14 gi|313122675|ref|YP_004044602.1| - 0.029 13.9 0.1 0.063 12.7 0.0 1.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Na_Pi_cotrans PF02690.10 gi|313122677|ref|YP_004044604.1| - 3.9e-17 62.3 20.1 4.7e-11 42.5 3.3 2.3 2 0 0 2 2 2 2 Na+/Pi-cotransporter Claudin_2 PF13903.1 gi|313122677|ref|YP_004044604.1| - 0.11 12.1 17.0 0.062 12.9 3.0 2.8 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Usp PF00582.21 gi|313122678|ref|YP_004044605.1| - 4.6e-24 85.1 2.7 5.2e-24 85.0 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|313122678|ref|YP_004044605.1| - 0.0077 15.5 0.4 0.069 12.4 0.1 2.0 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1906 PF08924.6 gi|313122678|ref|YP_004044605.1| - 0.1 12.4 0.2 1.6 8.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1906) PEX-2N PF09263.5 gi|313122678|ref|YP_004044605.1| - 0.13 12.6 0.0 0.28 11.5 0.0 1.6 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal CTP_transf_2 PF01467.21 gi|313122679|ref|YP_004044606.1| - 1.8e-07 31.3 1.1 2.9e-06 27.4 0.8 2.1 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|313122679|ref|YP_004044606.1| - 0.04 13.5 0.1 0.084 12.4 0.0 1.7 2 0 0 2 2 2 0 FAD synthetase RbcS PF12338.3 gi|313122679|ref|YP_004044606.1| - 0.062 13.0 0.2 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 Ribulose-1,5-bisphosphate carboxylase small subunit VanZ PF04892.7 gi|313122680|ref|YP_004044607.1| - 2.8e-07 30.5 0.1 3.6e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 VanZ like family Ammonium_transp PF00909.16 gi|313122680|ref|YP_004044607.1| - 0.082 11.3 0.0 0.54 8.6 0.0 2.0 2 0 0 2 2 2 0 Ammonium Transporter Family Cdc6_C PF09079.6 gi|313122681|ref|YP_004044608.1| - 1.4e-17 63.2 0.2 2.8e-17 62.2 0.2 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|313122681|ref|YP_004044608.1| - 3.6e-15 56.2 0.2 1.2e-14 54.5 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313122681|ref|YP_004044608.1| - 6.9e-12 45.7 1.1 7.6e-11 42.3 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|313122681|ref|YP_004044608.1| - 6.2e-06 26.4 0.3 2.3e-05 24.6 0.0 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|313122681|ref|YP_004044608.1| - 8.9e-05 22.2 0.1 0.00025 20.7 0.0 1.7 2 0 0 2 2 2 1 NACHT domain PhoH PF02562.11 gi|313122681|ref|YP_004044608.1| - 0.00015 21.1 0.4 0.039 13.1 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Sigma54_activat PF00158.21 gi|313122681|ref|YP_004044608.1| - 0.00015 21.2 0.1 0.00041 19.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|313122681|ref|YP_004044608.1| - 0.00017 20.5 0.0 0.00027 19.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.9 gi|313122681|ref|YP_004044608.1| - 0.00017 21.3 0.5 0.0019 17.9 0.4 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|313122681|ref|YP_004044608.1| - 0.0004 20.6 0.1 0.0015 18.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|313122681|ref|YP_004044608.1| - 0.0022 17.8 2.2 0.0071 16.1 0.1 2.5 2 1 1 3 3 3 1 Domain of unknown function DUF87 DEAD PF00270.24 gi|313122681|ref|YP_004044608.1| - 0.0029 17.1 2.3 1 8.8 0.2 2.5 1 1 0 2 2 2 2 DEAD/DEAH box helicase AAA_32 PF13654.1 gi|313122681|ref|YP_004044608.1| - 0.0047 15.6 0.6 1.3 7.6 0.2 2.2 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|313122681|ref|YP_004044608.1| - 0.0048 17.1 0.5 0.017 15.3 0.0 2.1 2 1 0 2 2 2 1 ABC transporter Kinesin PF00225.18 gi|313122681|ref|YP_004044608.1| - 0.005 15.5 0.0 0.011 14.4 0.0 1.6 1 0 0 1 1 1 1 Kinesin motor domain T2SE PF00437.15 gi|313122681|ref|YP_004044608.1| - 0.0079 15.1 0.0 0.019 13.8 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|313122681|ref|YP_004044608.1| - 0.011 15.6 0.1 0.033 14.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) AAA_10 PF12846.2 gi|313122681|ref|YP_004044608.1| - 0.017 14.5 0.3 0.07 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain Sigma54_activ_2 PF14532.1 gi|313122681|ref|YP_004044608.1| - 0.017 15.1 0.0 0.048 13.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|313122681|ref|YP_004044608.1| - 0.019 14.0 0.0 0.043 12.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.16 gi|313122681|ref|YP_004044608.1| - 0.027 13.6 0.0 0.043 12.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|313122681|ref|YP_004044608.1| - 0.028 15.2 0.5 0.22 12.3 0.3 2.6 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|313122681|ref|YP_004044608.1| - 0.03 13.7 0.0 0.057 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family P-II PF00543.17 gi|313122681|ref|YP_004044608.1| - 0.079 13.4 0.1 0.65 10.5 0.0 2.4 2 1 0 2 2 2 0 Nitrogen regulatory protein P-II RNA_helicase PF00910.17 gi|313122681|ref|YP_004044608.1| - 0.11 12.6 0.1 0.38 10.9 0.0 2.0 1 1 0 1 1 1 0 RNA helicase fn3 PF00041.16 gi|313122682|ref|YP_004044609.1| - 2e-23 82.2 30.5 4.6e-11 42.6 2.9 6.4 7 0 0 7 7 7 4 Fibronectin type III domain DUF4624 PF15417.1 gi|313122682|ref|YP_004044609.1| - 0.028 14.0 2.8 0.51 9.9 0.0 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4624) DUF1212 PF06738.7 gi|313122685|ref|YP_004044612.1| - 0.033 13.6 0.1 0.058 12.8 0.0 1.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) DUF4235 PF14019.1 gi|313122685|ref|YP_004044612.1| - 0.062 13.1 0.1 14 5.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) DUF3464 PF11947.3 gi|313122685|ref|YP_004044612.1| - 0.097 12.1 0.7 0.16 11.3 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3464) MarR_2 PF12802.2 gi|313122687|ref|YP_004044614.1| - 0.0012 18.5 0.1 0.0014 18.2 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|313122687|ref|YP_004044614.1| - 0.0035 16.7 0.1 0.0056 16.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|313122687|ref|YP_004044614.1| - 0.0068 16.0 0.0 0.0095 15.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|313122687|ref|YP_004044614.1| - 0.0076 16.3 0.0 0.059 13.4 0.0 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|313122687|ref|YP_004044614.1| - 0.027 14.5 0.0 0.037 14.1 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|313122687|ref|YP_004044614.1| - 0.029 13.7 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3489 PF11994.3 gi|313122687|ref|YP_004044614.1| - 0.041 13.8 0.0 0.048 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) MarR PF01047.17 gi|313122687|ref|YP_004044614.1| - 0.055 13.1 0.0 0.074 12.7 0.0 1.3 1 1 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|313122687|ref|YP_004044614.1| - 0.06 12.8 0.0 0.096 12.1 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.14 gi|313122687|ref|YP_004044614.1| - 0.075 12.7 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_43 PF09904.4 gi|313122687|ref|YP_004044614.1| - 0.077 12.8 0.0 0.092 12.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HDC PF02329.11 gi|313122688|ref|YP_004044615.1| - 0.065 11.8 0.0 0.08 11.5 0.0 1.1 1 0 0 1 1 1 0 Histidine carboxylase PI chain CENP-F_leu_zip PF10473.4 gi|313122689|ref|YP_004044616.1| - 8.7e-06 25.6 4.8 8.7e-06 25.6 3.3 2.3 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spectrin PF00435.16 gi|313122689|ref|YP_004044616.1| - 0.00038 20.7 3.9 0.4 11.0 0.3 2.9 2 0 0 2 2 2 2 Spectrin repeat XhlA PF10779.4 gi|313122689|ref|YP_004044616.1| - 0.0011 18.8 1.7 0.0011 18.8 1.2 2.6 3 0 0 3 3 2 1 Haemolysin XhlA DUF869 PF05911.6 gi|313122689|ref|YP_004044616.1| - 0.002 16.4 2.6 0.002 16.4 1.8 2.0 1 1 1 2 2 2 1 Plant protein of unknown function (DUF869) ATG16 PF08614.6 gi|313122689|ref|YP_004044616.1| - 0.0067 16.2 2.2 0.0067 16.2 1.5 2.7 2 1 0 3 3 3 1 Autophagy protein 16 (ATG16) TSC22 PF01166.13 gi|313122689|ref|YP_004044616.1| - 0.0071 16.2 4.4 0.35 10.8 0.2 2.9 1 1 1 2 2 2 1 TSC-22/dip/bun family FlaC_arch PF05377.6 gi|313122689|ref|YP_004044616.1| - 0.0073 16.1 4.5 0.012 15.4 0.7 2.8 2 2 0 2 2 2 1 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.7 gi|313122689|ref|YP_004044616.1| - 0.0097 15.6 1.1 0.0097 15.6 0.7 2.5 2 0 0 2 2 2 1 TPR/MLP1/MLP2-like protein Wbp11 PF09429.5 gi|313122689|ref|YP_004044616.1| - 0.012 15.6 10.7 1 9.3 0.1 3.3 3 0 0 3 3 3 0 WW domain binding protein 11 V_ATPase_I PF01496.14 gi|313122689|ref|YP_004044616.1| - 0.012 13.4 3.5 0.019 12.8 2.5 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.4 gi|313122689|ref|YP_004044616.1| - 0.015 15.4 1.2 0.015 15.4 0.8 2.9 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Nnf1 PF03980.9 gi|313122689|ref|YP_004044616.1| - 0.016 15.2 2.5 0.15 12.0 0.3 2.6 2 0 0 2 2 2 0 Nnf1 TMF_TATA_bd PF12325.3 gi|313122689|ref|YP_004044616.1| - 0.018 14.7 4.1 0.018 14.7 2.9 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding COG5 PF10392.4 gi|313122689|ref|YP_004044616.1| - 0.02 14.8 4.8 0.057 13.3 0.1 2.7 3 1 0 3 3 2 0 Golgi transport complex subunit 5 bZIP_2 PF07716.10 gi|313122689|ref|YP_004044616.1| - 0.03 14.1 1.1 0.03 14.1 0.7 3.2 2 1 1 3 3 3 0 Basic region leucine zipper Cep57_MT_bd PF06657.8 gi|313122689|ref|YP_004044616.1| - 0.033 14.1 1.8 0.087 12.7 0.6 2.2 2 0 0 2 2 1 0 Centrosome microtubule-binding domain of Cep57 GAS PF13851.1 gi|313122689|ref|YP_004044616.1| - 0.036 13.2 5.7 0.12 11.6 0.6 2.5 3 0 0 3 3 2 0 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.16 gi|313122689|ref|YP_004044616.1| - 0.04 13.8 3.3 0.04 13.8 2.3 1.9 2 0 0 2 2 1 0 bZIP transcription factor Prefoldin_2 PF01920.15 gi|313122689|ref|YP_004044616.1| - 0.052 13.3 0.8 0.052 13.3 0.6 3.0 3 1 0 3 3 3 0 Prefoldin subunit Vac_Fusion PF02346.11 gi|313122689|ref|YP_004044616.1| - 0.062 12.7 1.0 0.21 11.0 0.7 1.9 1 0 0 1 1 1 0 Chordopoxvirus fusion protein CENP-Q PF13094.1 gi|313122689|ref|YP_004044616.1| - 0.086 12.8 13.1 0.56 10.2 7.7 2.4 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF641 PF04859.7 gi|313122689|ref|YP_004044616.1| - 0.093 12.4 1.3 0.11 12.3 0.1 1.7 2 0 0 2 2 1 0 Plant protein of unknown function (DUF641) Macoilin PF09726.4 gi|313122689|ref|YP_004044616.1| - 0.096 10.9 2.8 0.062 11.5 0.7 1.4 1 1 0 1 1 1 0 Transmembrane protein Occludin_ELL PF07303.8 gi|313122689|ref|YP_004044616.1| - 0.11 13.2 2.5 7.3 7.3 0.3 3.1 3 0 0 3 3 3 0 Occludin homology domain Snapin_Pallidin PF14712.1 gi|313122689|ref|YP_004044616.1| - 0.12 12.6 3.9 0.33 11.2 0.2 2.5 2 0 0 2 2 2 0 Snapin/Pallidin CCDC155 PF14662.1 gi|313122689|ref|YP_004044616.1| - 0.13 11.8 7.5 0.25 10.9 5.1 1.5 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 NPV_P10 PF05531.7 gi|313122689|ref|YP_004044616.1| - 0.13 12.5 0.2 0.13 12.5 0.1 3.6 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|313122689|ref|YP_004044616.1| - 0.16 11.1 2.3 0.24 10.5 1.2 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|313122689|ref|YP_004044616.1| - 0.16 11.5 17.0 0.037 13.6 8.6 2.2 2 1 0 2 2 2 0 IncA protein DUF1192 PF06698.6 gi|313122689|ref|YP_004044616.1| - 0.21 11.4 5.5 0.096 12.5 1.6 2.2 2 1 0 2 2 1 0 Protein of unknown function (DUF1192) DUF972 PF06156.8 gi|313122689|ref|YP_004044616.1| - 0.24 11.7 4.0 0.52 10.6 0.4 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF972) UPF0184 PF03670.8 gi|313122689|ref|YP_004044616.1| - 0.26 11.5 6.4 0.13 12.4 1.4 2.6 3 0 0 3 3 2 0 Uncharacterised protein family (UPF0184) ADIP PF11559.3 gi|313122689|ref|YP_004044616.1| - 0.26 11.1 6.4 0.11 12.3 0.9 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding ORF6C PF10552.4 gi|313122689|ref|YP_004044616.1| - 0.28 10.9 6.3 3 7.6 0.2 3.6 3 1 1 4 4 4 0 ORF6C domain Ax_dynein_light PF10211.4 gi|313122689|ref|YP_004044616.1| - 0.31 10.8 4.0 0.89 9.3 0.5 2.3 2 0 0 2 2 2 0 Axonemal dynein light chain PilJ PF13675.1 gi|313122689|ref|YP_004044616.1| - 0.39 11.0 7.2 0.26 11.6 2.4 2.5 2 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term HDV_ag PF01517.13 gi|313122689|ref|YP_004044616.1| - 0.43 10.2 3.4 0.88 9.2 0.5 2.2 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen DUF2968 PF11180.3 gi|313122689|ref|YP_004044616.1| - 0.54 9.6 5.0 0.25 10.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) APG6 PF04111.7 gi|313122689|ref|YP_004044616.1| - 0.67 8.9 8.0 0.25 10.3 3.1 1.9 1 1 0 2 2 2 0 Autophagy protein Apg6 Baculo_PEP_C PF04513.7 gi|313122689|ref|YP_004044616.1| - 0.69 9.7 4.5 2.3 8.0 0.4 2.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4164 PF13747.1 gi|313122689|ref|YP_004044616.1| - 0.93 9.6 15.3 0.054 13.6 4.0 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4164) DUF3450 PF11932.3 gi|313122689|ref|YP_004044616.1| - 1.1 8.4 6.1 0.2 10.9 0.3 2.2 3 0 0 3 3 2 0 Protein of unknown function (DUF3450) HALZ PF02183.13 gi|313122689|ref|YP_004044616.1| - 1.2 8.8 10.7 0.38 10.5 3.3 2.8 3 1 0 3 3 2 0 Homeobox associated leucine zipper DUF2205 PF10224.4 gi|313122689|ref|YP_004044616.1| - 1.2 8.7 11.9 0.41 10.2 2.3 3.2 3 1 1 4 4 2 0 Predicted coiled-coil protein (DUF2205) SlyX PF04102.7 gi|313122689|ref|YP_004044616.1| - 1.4 9.3 8.5 0.92 9.9 1.5 2.8 3 0 0 3 3 2 0 SlyX Spc24 PF08286.6 gi|313122689|ref|YP_004044616.1| - 1.6 8.4 7.9 0.16 11.6 0.9 2.5 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 DivIVA PF05103.8 gi|313122689|ref|YP_004044616.1| - 1.6 8.8 7.3 0.63 10.0 0.7 2.6 3 0 0 3 3 2 0 DivIVA protein Fib_alpha PF08702.5 gi|313122689|ref|YP_004044616.1| - 1.7 8.7 5.6 6.5 6.8 0.2 3.0 3 1 0 3 3 3 0 Fibrinogen alpha/beta chain family DUF4472 PF14739.1 gi|313122689|ref|YP_004044616.1| - 2 8.9 9.3 1.7 9.1 3.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) TMCO5 PF14992.1 gi|313122689|ref|YP_004044616.1| - 2.2 7.3 9.2 5 6.1 6.3 1.5 1 1 0 1 1 1 0 TMCO5 family DMPK_coil PF08826.5 gi|313122689|ref|YP_004044616.1| - 2.4 8.1 11.7 0.79 9.6 2.3 3.0 3 0 0 3 3 2 0 DMPK coiled coil domain like DUF607 PF04678.8 gi|313122689|ref|YP_004044616.1| - 2.6 7.9 4.4 6 6.7 0.4 2.4 3 0 0 3 3 2 0 Protein of unknown function, DUF607 Rootletin PF15035.1 gi|313122689|ref|YP_004044616.1| - 3 7.7 10.6 1.4 8.8 2.8 2.5 3 0 0 3 3 2 0 Ciliary rootlet component, centrosome cohesion DivIC PF04977.10 gi|313122689|ref|YP_004044616.1| - 3 7.3 13.4 1.8 8.0 2.4 3.2 3 1 0 3 3 3 0 Septum formation initiator Phage_GP20 PF06810.6 gi|313122689|ref|YP_004044616.1| - 3 7.2 7.8 1.4 8.3 1.4 2.4 1 1 0 2 2 2 0 Phage minor structural protein GP20 DUF4140 PF13600.1 gi|313122689|ref|YP_004044616.1| - 3.4 8.1 14.4 0.66 10.4 1.7 3.3 3 1 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF1664 PF07889.7 gi|313122689|ref|YP_004044616.1| - 3.5 7.4 10.5 2.8 7.7 0.2 2.7 3 1 0 3 3 2 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|313122689|ref|YP_004044616.1| - 3.8 7.0 8.2 0.54 9.7 0.4 2.6 3 1 0 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlxA PF14282.1 gi|313122689|ref|YP_004044616.1| - 4 7.4 8.5 2.7 7.9 0.1 2.8 3 0 0 3 3 2 0 FlxA-like protein End3 PF12761.2 gi|313122689|ref|YP_004044616.1| - 5.7 6.5 10.0 2.2 7.8 0.2 2.6 3 0 0 3 3 2 0 Actin cytoskeleton-regulatory complex protein END3 TMF_DNA_bd PF12329.3 gi|313122689|ref|YP_004044616.1| - 6.8 6.5 11.9 0.36 10.6 1.2 3.1 3 1 1 4 4 3 0 TATA element modulatory factor 1 DNA binding DUF4200 PF13863.1 gi|313122689|ref|YP_004044616.1| - 6.9 6.6 11.1 5.2 7.0 0.8 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4200) PCNA_N PF00705.13 gi|313122690|ref|YP_004044617.1| - 6.1e-06 25.7 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|313122690|ref|YP_004044617.1| - 0.029 14.2 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Proliferating cell nuclear antigen, C-terminal domain TusA PF01206.12 gi|313122690|ref|YP_004044617.1| - 0.04 13.5 0.1 1 9.0 0.0 2.5 2 0 0 2 2 2 0 Sulfurtransferase TusA AAA_22 PF13401.1 gi|313122692|ref|YP_004044619.1| - 1.7e-11 44.3 0.1 4.2e-11 43.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313122692|ref|YP_004044619.1| - 1.7e-10 41.2 5.9 1.9e-10 41.0 1.8 2.4 1 1 1 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.6 gi|313122692|ref|YP_004044619.1| - 4.1e-07 29.6 0.2 2.4e-06 27.1 0.0 2.4 3 0 0 3 3 3 1 CDC6, C terminal AAA_30 PF13604.1 gi|313122692|ref|YP_004044619.1| - 9.7e-05 22.0 0.1 0.00018 21.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|313122692|ref|YP_004044619.1| - 0.0042 16.8 0.0 0.0098 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313122692|ref|YP_004044619.1| - 0.0055 16.9 0.0 0.016 15.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|313122692|ref|YP_004044619.1| - 0.0066 15.9 0.4 1.6 8.2 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|313122692|ref|YP_004044619.1| - 0.013 14.4 0.0 0.023 13.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF815 PF05673.8 gi|313122692|ref|YP_004044619.1| - 0.014 14.3 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|313122692|ref|YP_004044619.1| - 0.022 14.3 0.0 0.075 12.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_18 PF13238.1 gi|313122692|ref|YP_004044619.1| - 0.023 15.0 0.0 0.057 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|313122692|ref|YP_004044619.1| - 0.024 13.7 0.0 0.054 12.5 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|313122692|ref|YP_004044619.1| - 0.025 14.0 0.1 0.14 11.5 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|313122692|ref|YP_004044619.1| - 0.029 14.2 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|313122692|ref|YP_004044619.1| - 0.03 13.3 1.8 1.3 7.9 0.0 3.2 3 1 0 4 4 4 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|313122692|ref|YP_004044619.1| - 0.032 13.9 1.4 0.055 13.2 0.3 2.1 2 0 0 2 2 1 0 Part of AAA domain AAA_17 PF13207.1 gi|313122692|ref|YP_004044619.1| - 0.038 14.7 0.2 0.12 13.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|313122692|ref|YP_004044619.1| - 0.042 12.8 0.0 0.057 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|313122692|ref|YP_004044619.1| - 0.044 13.6 0.7 0.12 12.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|313122692|ref|YP_004044619.1| - 0.054 13.0 0.2 0.14 11.6 0.0 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|313122692|ref|YP_004044619.1| - 0.07 12.8 0.5 5.5 6.6 0.0 2.3 1 1 1 2 2 2 0 NTPase Penicillinase_R PF03965.11 gi|313122692|ref|YP_004044619.1| - 0.094 12.8 0.1 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor Cdc6_C PF09079.6 gi|313122695|ref|YP_004044622.1| - 1.7e-19 69.3 0.6 4.4e-19 67.9 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|313122695|ref|YP_004044622.1| - 1.7e-12 47.5 0.4 5.9e-12 45.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313122695|ref|YP_004044622.1| - 2.1e-11 44.1 0.6 1.5e-10 41.3 0.0 2.5 2 2 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|313122695|ref|YP_004044622.1| - 3.5e-06 26.8 0.0 9.5e-06 25.4 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|313122695|ref|YP_004044622.1| - 5.3e-06 26.6 0.0 1.7e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|313122695|ref|YP_004044622.1| - 9e-06 25.4 0.0 2.2e-05 24.2 0.0 1.7 2 0 0 2 2 2 1 NACHT domain DUF815 PF05673.8 gi|313122695|ref|YP_004044622.1| - 0.00091 18.2 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_32 PF13654.1 gi|313122695|ref|YP_004044622.1| - 0.0014 17.3 0.0 0.68 8.5 0.0 2.5 3 0 0 3 3 3 2 AAA domain T2SE PF00437.15 gi|313122695|ref|YP_004044622.1| - 0.0022 16.9 0.0 0.0059 15.5 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF87 PF01935.12 gi|313122695|ref|YP_004044622.1| - 0.0025 17.6 1.2 1 9.1 0.0 3.2 2 1 0 3 3 3 1 Domain of unknown function DUF87 DEAD PF00270.24 gi|313122695|ref|YP_004044622.1| - 0.0039 16.6 1.2 1.8 8.0 0.0 2.7 2 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_17 PF13207.1 gi|313122695|ref|YP_004044622.1| - 0.0044 17.8 0.0 0.013 16.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|313122695|ref|YP_004044622.1| - 0.0047 15.8 0.0 0.0089 14.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain KAP_NTPase PF07693.9 gi|313122695|ref|YP_004044622.1| - 0.0056 15.7 2.9 0.088 11.7 0.0 2.8 2 1 1 3 3 3 1 KAP family P-loop domain RNA_helicase PF00910.17 gi|313122695|ref|YP_004044622.1| - 0.0081 16.3 0.0 0.022 14.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_18 PF13238.1 gi|313122695|ref|YP_004044622.1| - 0.011 16.0 0.0 0.049 13.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|313122695|ref|YP_004044622.1| - 0.012 14.6 0.0 0.23 10.4 0.0 2.5 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|313122695|ref|YP_004044622.1| - 0.015 14.8 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|313122695|ref|YP_004044622.1| - 0.015 14.8 0.4 0.051 13.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313122695|ref|YP_004044622.1| - 0.032 13.9 0.1 10 5.8 0.0 3.2 3 1 1 4 4 4 0 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|313122695|ref|YP_004044622.1| - 0.032 14.1 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) ORC4_C PF14629.1 gi|313122695|ref|YP_004044622.1| - 0.038 13.3 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus AAA_14 PF13173.1 gi|313122695|ref|YP_004044622.1| - 0.039 13.8 0.1 0.12 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313122695|ref|YP_004044622.1| - 0.068 12.3 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF2075 PF09848.4 gi|313122695|ref|YP_004044622.1| - 0.079 11.9 0.0 0.13 11.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|313122695|ref|YP_004044622.1| - 0.093 12.6 0.2 5.1 6.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|313122695|ref|YP_004044622.1| - 0.11 11.8 2.0 0.67 9.3 1.3 2.4 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|313122695|ref|YP_004044622.1| - 0.13 12.5 0.2 0.38 11.0 0.0 2.0 2 1 0 2 2 2 0 ABC transporter MMR_HSR1 PF01926.18 gi|313122695|ref|YP_004044622.1| - 0.13 12.1 0.1 0.65 9.9 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|313122696|ref|YP_004044623.1| - 2.7e-34 118.8 0.0 5.6e-34 117.8 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|313122696|ref|YP_004044623.1| - 1.6e-17 63.4 0.0 3.7e-17 62.2 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|313122696|ref|YP_004044623.1| - 5.8e-08 32.9 0.0 1.2e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313122696|ref|YP_004044623.1| - 5.6e-07 29.7 0.1 1.5e-06 28.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|313122696|ref|YP_004044623.1| - 2.3e-05 24.3 0.0 4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.5 gi|313122696|ref|YP_004044623.1| - 0.0053 16.3 0.1 0.015 14.8 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|313122696|ref|YP_004044623.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Miro PF08477.8 gi|313122696|ref|YP_004044623.1| - 0.17 12.3 0.0 0.32 11.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein Acetyltransf_4 PF13420.1 gi|313122697|ref|YP_004044624.1| - 1.7e-18 67.0 0.2 2.1e-18 66.7 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|313122697|ref|YP_004044624.1| - 4.1e-18 65.1 0.2 6.3e-18 64.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|313122697|ref|YP_004044624.1| - 1.3e-17 63.9 0.1 1.7e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|313122697|ref|YP_004044624.1| - 9.9e-13 48.0 0.1 2.4e-12 46.8 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|313122697|ref|YP_004044624.1| - 1.6e-09 37.6 0.4 4.6e-09 36.2 0.3 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|313122697|ref|YP_004044624.1| - 2.7e-09 36.6 0.0 4.7e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|313122697|ref|YP_004044624.1| - 9.4e-08 32.3 0.5 1.1e-07 32.0 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|313122697|ref|YP_004044624.1| - 5.5e-05 23.0 0.5 8.7e-05 22.4 0.3 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|313122697|ref|YP_004044624.1| - 0.00091 19.1 0.0 0.0012 18.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|313122697|ref|YP_004044624.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase DUF3650 PF12368.3 gi|313122697|ref|YP_004044624.1| - 0.051 13.0 1.1 0.16 11.4 0.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) Acetyltransf_CG PF14542.1 gi|313122697|ref|YP_004044624.1| - 0.067 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|313122697|ref|YP_004044624.1| - 0.088 12.1 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 GNAT acetyltransferase 2 ITI_HC_C PF06668.7 gi|313122697|ref|YP_004044624.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus AMP-binding PF00501.23 gi|313122698|ref|YP_004044625.1| - 2.4e-89 299.6 0.2 3.1e-89 299.2 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313122698|ref|YP_004044625.1| - 5e-16 59.4 0.6 9.9e-16 58.4 0.4 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DMRL_synthase PF00885.14 gi|313122698|ref|YP_004044625.1| - 0.00012 21.7 1.1 0.48 10.0 0.0 2.2 2 0 0 2 2 2 2 6,7-dimethyl-8-ribityllumazine synthase HTH_10 PF04967.7 gi|313122699|ref|YP_004044626.1| - 2.5e-20 71.7 0.0 7.8e-20 70.2 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|313122699|ref|YP_004044626.1| - 1.3e-10 41.9 2.7 2e-10 41.3 0.5 2.2 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|313122699|ref|YP_004044626.1| - 1.5e-07 31.5 0.2 5e-07 29.8 0.1 2.0 2 0 0 2 2 2 1 GAF domain Phage_integrase PF00589.17 gi|313122699|ref|YP_004044626.1| - 1.6e-06 27.9 0.0 2.2e-05 24.1 0.0 2.4 2 0 0 2 2 2 1 Phage integrase family GAF PF01590.21 gi|313122699|ref|YP_004044626.1| - 0.002 18.2 0.2 0.0047 17.0 0.1 1.8 1 1 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.11 gi|313122699|ref|YP_004044626.1| - 0.025 13.8 0.0 0.079 12.2 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|313122699|ref|YP_004044626.1| - 0.08 12.2 0.0 0.25 10.6 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family AMP-binding PF00501.23 gi|313122700|ref|YP_004044627.1| - 5.6e-93 311.5 0.0 6.7e-93 311.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313122700|ref|YP_004044627.1| - 1.1e-17 64.6 0.2 2.2e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4212 PF13937.1 gi|313122701|ref|YP_004044628.1| - 6.2e-25 87.0 0.0 7.6e-25 86.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF485 PF04341.7 gi|313122701|ref|YP_004044628.1| - 0.0011 18.5 0.3 0.0017 18.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF485 DUF2781 PF10914.3 gi|313122701|ref|YP_004044628.1| - 0.002 17.8 0.5 0.0026 17.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2781) DUF3311 PF11755.3 gi|313122701|ref|YP_004044628.1| - 0.019 14.4 0.5 0.031 13.8 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3311) SSF PF00474.12 gi|313122702|ref|YP_004044629.1| - 5e-55 186.8 34.5 7.4e-55 186.2 23.9 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.21 gi|313122703|ref|YP_004044630.1| - 6e-40 136.6 1.5 7.1e-40 136.4 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|313122703|ref|YP_004044630.1| - 0.064 12.9 0.1 1.7 8.3 0.1 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DUF1785 PF08699.5 gi|313122704|ref|YP_004044631.1| - 0.01 15.1 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1785) Abhydrolase_6 PF12697.2 gi|313122705|ref|YP_004044632.1| - 1.7e-36 126.2 0.6 2e-36 126.0 0.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|313122705|ref|YP_004044632.1| - 5.8e-25 88.1 0.1 4.2e-24 85.3 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|313122705|ref|YP_004044632.1| - 2.7e-16 59.6 0.3 1.4e-14 54.0 0.2 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family UPF0227 PF05728.7 gi|313122705|ref|YP_004044632.1| - 1.1e-05 25.2 0.0 1.6e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Ndr PF03096.9 gi|313122705|ref|YP_004044632.1| - 5e-05 21.9 0.0 0.00019 19.9 0.0 1.7 1 1 1 2 2 2 1 Ndr family Thioesterase PF00975.15 gi|313122705|ref|YP_004044632.1| - 0.00026 21.3 0.0 0.00034 20.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.3 gi|313122705|ref|YP_004044632.1| - 0.00034 20.3 0.0 0.00059 19.6 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase DUF2048 PF09752.4 gi|313122705|ref|YP_004044632.1| - 0.0024 16.7 0.0 0.01 14.7 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2048) Patatin PF01734.17 gi|313122705|ref|YP_004044632.1| - 0.0034 17.3 0.1 0.0062 16.4 0.1 1.6 1 1 0 1 1 1 1 Patatin-like phospholipase Esterase PF00756.15 gi|313122705|ref|YP_004044632.1| - 0.012 15.0 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Esterase_phd PF10503.4 gi|313122705|ref|YP_004044632.1| - 0.015 14.5 0.1 0.15 11.2 0.0 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase PGAP1 PF07819.8 gi|313122705|ref|YP_004044632.1| - 0.061 12.9 0.2 1.8 8.0 0.1 2.4 1 1 0 1 1 1 0 PGAP1-like protein Abhydrolase_3 PF07859.8 gi|313122705|ref|YP_004044632.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold DoxX PF07681.7 gi|313122706|ref|YP_004044633.1| - 1.1e-21 77.0 14.3 1.9e-21 76.2 9.9 1.4 1 0 0 1 1 1 1 DoxX DoxD PF04173.8 gi|313122706|ref|YP_004044633.1| - 0.00083 19.0 4.2 0.0015 18.2 2.9 1.4 1 0 0 1 1 1 1 TQO small subunit DoxD PQQ_3 PF13570.1 gi|313122708|ref|YP_004044635.1| - 4.8e-58 191.9 44.7 7.7e-11 41.9 0.7 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|313122708|ref|YP_004044635.1| - 6.9e-52 176.2 16.0 1e-19 70.9 1.9 3.7 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|313122708|ref|YP_004044635.1| - 1.1e-44 147.7 16.3 4.7e-08 32.1 0.2 7.2 7 0 0 7 7 7 7 PQQ enzyme repeat PsbP PF01789.11 gi|313122708|ref|YP_004044635.1| - 1.8e-05 24.2 0.1 3.8 6.9 0.0 5.0 4 1 1 5 5 5 1 PsbP DUF1150 PF06620.6 gi|313122708|ref|YP_004044635.1| - 0.0014 18.4 2.8 4.8 7.0 0.0 5.0 5 0 0 5 5 5 1 Protein of unknown function (DUF1150) Lant_dehyd_C PF04738.8 gi|313122708|ref|YP_004044635.1| - 0.024 12.8 0.0 7.8 4.6 0.0 3.2 4 0 0 4 4 4 0 Lantibiotic dehydratase, C terminus DUF2862 PF11061.3 gi|313122708|ref|YP_004044635.1| - 0.051 13.2 0.0 36 4.1 0.0 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF2862) NUDIX-like PF09296.6 gi|313122708|ref|YP_004044635.1| - 0.094 13.0 0.2 3.9 7.8 0.0 3.2 1 1 1 2 2 2 0 NADH pyrophosphatase-like rudimentary NUDIX domain PQQ_3 PF13570.1 gi|313122709|ref|YP_004044636.1| - 9e-73 238.7 30.7 2.3e-12 46.7 0.1 8.4 8 1 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|313122709|ref|YP_004044636.1| - 1.9e-56 191.1 9.7 8.6e-32 110.4 0.5 3.1 2 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|313122709|ref|YP_004044636.1| - 1.8e-46 153.3 14.6 9.4e-10 37.5 0.1 8.6 9 0 0 9 9 9 5 PQQ enzyme repeat DUF4394 PF14339.1 gi|313122709|ref|YP_004044636.1| - 0.0064 15.7 0.3 2.8 7.1 0.0 4.0 2 2 1 3 3 3 1 Domain of unknown function (DUF4394) Arylsulfotrans PF05935.6 gi|313122709|ref|YP_004044636.1| - 0.015 13.8 0.0 10 4.5 0.0 3.1 2 1 0 2 2 2 0 Arylsulfotransferase (ASST) Glycos_transf_2 PF00535.21 gi|313122709|ref|YP_004044636.1| - 0.11 12.1 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF4382 PF14321.1 gi|313122710|ref|YP_004044637.1| - 7.4e-28 97.3 1.0 7.4e-28 97.3 0.7 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4382) DUF4198 PF10670.4 gi|313122710|ref|YP_004044637.1| - 2.5e-05 24.4 12.4 0.01 15.8 1.4 3.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4198) DUF4480 PF13715.1 gi|313122710|ref|YP_004044637.1| - 5.7e-05 23.0 8.3 0.016 15.2 0.4 3.3 2 2 1 4 4 4 2 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|313122710|ref|YP_004044637.1| - 0.00011 22.1 16.8 0.00043 20.2 0.6 3.8 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF2606 PF10794.4 gi|313122710|ref|YP_004044637.1| - 0.044 13.2 0.5 1.3 8.4 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2606) PEGA PF08308.6 gi|313122710|ref|YP_004044637.1| - 0.11 12.3 2.9 5.4 6.8 0.2 3.3 2 1 0 2 2 2 0 PEGA domain DUF1684 PF07920.6 gi|313122710|ref|YP_004044637.1| - 0.22 11.3 4.7 0.3 10.9 1.0 2.7 2 2 1 3 3 3 0 Protein of unknown function (DUF1684) Nitroreductase PF00881.19 gi|313122711|ref|YP_004044638.1| - 3.9e-16 59.2 0.0 3.8e-09 36.5 0.0 2.3 2 0 0 2 2 2 2 Nitroreductase family Sugar_tr PF00083.19 gi|313122713|ref|YP_004044640.1| - 9e-125 416.7 26.3 1e-124 416.5 18.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|313122713|ref|YP_004044640.1| - 7.5e-41 140.0 61.1 4.1e-32 111.2 15.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|313122713|ref|YP_004044640.1| - 8.6e-09 34.1 2.3 8.6e-09 34.1 1.6 2.0 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.15 gi|313122713|ref|YP_004044640.1| - 0.00014 20.0 1.4 0.18 9.8 0.0 2.2 2 0 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family MFS_3 PF05977.8 gi|313122713|ref|YP_004044640.1| - 0.00051 18.2 6.0 0.00051 18.2 4.2 2.2 2 0 0 2 2 2 1 Transmembrane secretion effector Bac_export_3 PF01313.14 gi|313122713|ref|YP_004044640.1| - 0.068 12.8 0.1 0.068 12.8 0.1 3.8 6 0 0 6 6 6 0 Bacterial export proteins, family 3 SBF PF01758.11 gi|313122714|ref|YP_004044641.1| - 1.2e-10 41.1 18.9 2e-10 40.3 13.1 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|313122714|ref|YP_004044641.1| - 3.7e-08 32.8 16.9 5.1e-08 32.3 11.7 1.3 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) HxlR PF01638.12 gi|313122715|ref|YP_004044642.1| - 4.7e-20 71.0 0.0 5.8e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|313122715|ref|YP_004044642.1| - 1.1e-05 25.0 0.3 1.6e-05 24.5 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|313122715|ref|YP_004044642.1| - 0.00017 21.2 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|313122715|ref|YP_004044642.1| - 0.00042 20.5 0.0 0.0006 20.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|313122715|ref|YP_004044642.1| - 0.00061 19.5 0.0 0.00079 19.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313122715|ref|YP_004044642.1| - 0.00071 18.9 0.0 0.001 18.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|313122715|ref|YP_004044642.1| - 0.0031 17.1 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|313122715|ref|YP_004044642.1| - 0.0031 17.5 0.0 0.0051 16.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_45 PF14947.1 gi|313122715|ref|YP_004044642.1| - 0.02 14.7 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|313122715|ref|YP_004044642.1| - 0.029 14.4 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain SHOCT PF09851.4 gi|313122715|ref|YP_004044642.1| - 0.049 13.1 0.8 0.43 10.1 0.3 2.3 2 0 0 2 2 2 0 Short C-terminal domain Cullin_Nedd8 PF10557.4 gi|313122715|ref|YP_004044642.1| - 0.071 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Cullin protein neddylation domain CARD PF00619.16 gi|313122715|ref|YP_004044642.1| - 0.087 12.6 0.1 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 Caspase recruitment domain LexA_DNA_bind PF01726.11 gi|313122715|ref|YP_004044642.1| - 0.089 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Peripla_BP_2 PF01497.13 gi|313122717|ref|YP_004044644.1| - 2.8e-23 82.2 0.0 3.7e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313122717|ref|YP_004044644.1| - 0.0056 16.5 0.4 0.01 15.7 0.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Myco_19_kDa PF05481.7 gi|313122717|ref|YP_004044644.1| - 0.11 12.3 3.3 0.2 11.4 2.3 1.4 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen Copper-bind PF00127.15 gi|313122718|ref|YP_004044645.1| - 3.8e-28 97.6 0.1 3.8e-16 59.1 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313122718|ref|YP_004044645.1| - 1.1e-10 41.2 0.0 7.7e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 Cupredoxin-like domain Serpentine_r_xa PF03383.10 gi|313122720|ref|YP_004044647.1| - 0.072 12.8 2.0 0.17 11.6 0.1 1.9 1 1 1 2 2 2 0 Caenorhabditis serpentine receptor-like protein, class xa DUF202 PF02656.10 gi|313122720|ref|YP_004044647.1| - 0.63 10.3 3.5 0.35 11.1 0.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF202) EcsB PF05975.7 gi|313122720|ref|YP_004044647.1| - 3.9 5.8 9.1 8.1 4.7 6.3 1.5 1 1 0 1 1 1 0 Bacterial ABC transporter protein EcsB MS_channel PF00924.13 gi|313122721|ref|YP_004044648.1| - 1.2e-46 158.7 0.0 1.2e-46 158.7 0.0 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel PRA1 PF03208.14 gi|313122721|ref|YP_004044648.1| - 2.4 7.5 8.9 4.2 6.7 6.2 1.4 1 0 0 1 1 1 0 PRA1 family protein Na_H_antiporter PF03553.9 gi|313122723|ref|YP_004044650.1| - 5.8e-43 147.0 46.2 9.2e-33 113.5 15.5 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.13 gi|313122724|ref|YP_004044651.1| - 1.1e-27 96.2 0.1 4e-27 94.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313122724|ref|YP_004044651.1| - 3.5e-08 32.8 0.0 1.3e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313122724|ref|YP_004044651.1| - 5.3e-05 22.9 0.1 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313122724|ref|YP_004044651.1| - 6.8e-05 22.1 0.1 0.00014 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313122724|ref|YP_004044651.1| - 0.0018 17.9 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|313122724|ref|YP_004044651.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|313122724|ref|YP_004044651.1| - 0.0028 17.0 0.0 0.0066 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|313122724|ref|YP_004044651.1| - 0.0034 17.0 0.0 0.0074 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF1803 PF08820.5 gi|313122724|ref|YP_004044651.1| - 0.0041 16.7 0.0 0.008 15.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) HTH_40 PF14493.1 gi|313122724|ref|YP_004044651.1| - 0.0079 16.3 0.1 0.02 15.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313122724|ref|YP_004044651.1| - 0.0085 15.7 0.3 0.016 14.9 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|313122724|ref|YP_004044651.1| - 0.018 14.6 0.1 0.11 12.2 0.1 2.2 2 0 0 2 2 2 0 HTH domain CodY PF06018.9 gi|313122724|ref|YP_004044651.1| - 0.024 13.9 0.0 0.042 13.1 0.0 1.4 1 0 0 1 1 1 0 CodY GAF-like domain HTH_34 PF13601.1 gi|313122724|ref|YP_004044651.1| - 0.092 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|313122724|ref|YP_004044651.1| - 0.1 12.9 0.1 0.21 11.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain GCV_T PF01571.16 gi|313122725|ref|YP_004044652.1| - 5e-61 205.7 0.0 7.1e-61 205.2 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|313122725|ref|YP_004044652.1| - 6.9e-27 93.3 0.0 1.2e-26 92.5 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|313122725|ref|YP_004044652.1| - 8.4e-07 28.9 0.0 0.00037 20.4 0.0 2.9 3 1 0 3 3 3 2 GTP-binding protein TrmE N-terminus SoxG PF04268.7 gi|313122725|ref|YP_004044652.1| - 0.048 13.5 0.0 0.5 10.2 0.0 2.2 2 0 0 2 2 2 0 Sarcosine oxidase, gamma subunit family GCV_H PF01597.14 gi|313122726|ref|YP_004044653.1| - 1.2e-39 134.7 0.0 1.3e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|313122726|ref|YP_004044653.1| - 0.0054 16.3 0.1 0.008 15.7 0.1 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme DUF2118 PF09891.4 gi|313122726|ref|YP_004044653.1| - 0.045 13.4 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) RnfC_N PF13375.1 gi|313122726|ref|YP_004044653.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.11 gi|313122727|ref|YP_004044654.1| - 1.3e-109 366.7 0.0 1.6e-109 366.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|313122727|ref|YP_004044654.1| - 0.024 12.9 0.0 0.035 12.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|313122728|ref|YP_004044655.1| - 5.1e-10 38.6 0.0 8.4e-10 37.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|313122728|ref|YP_004044655.1| - 5.1e-09 35.3 0.0 1.9e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|313122728|ref|YP_004044655.1| - 0.00013 21.2 0.0 0.0002 20.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.14 gi|313122729|ref|YP_004044656.1| - 3e-159 529.7 0.3 3.6e-159 529.4 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|313122729|ref|YP_004044656.1| - 1.9e-08 33.6 0.0 5e-08 32.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|313122729|ref|YP_004044656.1| - 2.2e-06 27.0 0.0 7.3e-05 22.0 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|313122729|ref|YP_004044656.1| - 1.6e-05 24.1 0.9 2.5e-05 23.4 0.6 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Trypsin_2 PF13365.1 gi|313122729|ref|YP_004044656.1| - 0.003 17.5 0.0 0.013 15.5 0.0 2.1 2 1 0 2 2 2 1 Trypsin-like peptidase domain ATP-synt_F PF01990.12 gi|313122729|ref|YP_004044656.1| - 0.095 13.1 0.0 0.29 11.5 0.0 1.8 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit PALP PF00291.20 gi|313122730|ref|YP_004044657.1| - 3.2e-79 266.3 4.5 3.8e-79 266.0 3.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|313122730|ref|YP_004044657.1| - 1.5e-08 33.9 0.1 4.5e-08 32.3 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|313122730|ref|YP_004044657.1| - 1.6e-05 25.1 0.0 6e-05 23.2 0.0 2.1 3 0 0 3 3 3 1 ACT domain Beta-lactamase PF00144.19 gi|313122731|ref|YP_004044658.1| - 3.4e-61 207.1 0.0 5e-61 206.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|313122731|ref|YP_004044658.1| - 1e-18 67.1 0.0 2.9e-18 65.7 0.0 1.8 2 0 0 2 2 2 1 Pab87 octamerisation domain Pyr_redox_2 PF07992.9 gi|313122732|ref|YP_004044659.1| - 2.9e-40 138.2 0.0 5e-40 137.5 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|313122732|ref|YP_004044659.1| - 3.5e-35 120.3 2.1 3.6e-35 120.3 0.5 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|313122732|ref|YP_004044659.1| - 1e-22 80.3 7.7 6.9e-20 71.2 0.2 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|313122732|ref|YP_004044659.1| - 1e-10 41.0 6.0 2.4e-08 33.2 1.0 3.4 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|313122732|ref|YP_004044659.1| - 1.1e-09 38.6 0.6 3.4e-08 33.8 0.1 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|313122732|ref|YP_004044659.1| - 1.3e-09 37.4 3.6 2e-07 30.2 0.9 2.7 3 1 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.19 gi|313122732|ref|YP_004044659.1| - 3.1e-09 36.1 11.5 5.4e-05 22.2 1.7 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|313122732|ref|YP_004044659.1| - 7.3e-09 35.2 0.2 1.3e-08 34.4 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|313122732|ref|YP_004044659.1| - 3.6e-08 33.3 1.4 5.9e-05 23.0 0.3 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|313122732|ref|YP_004044659.1| - 9e-08 30.9 3.6 1.9e-05 23.3 0.4 3.1 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|313122732|ref|YP_004044659.1| - 1.8e-07 30.5 4.9 0.0001 21.5 0.2 3.0 2 1 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.13 gi|313122732|ref|YP_004044659.1| - 2.2e-06 27.4 6.8 0.00081 19.0 0.0 3.2 3 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|313122732|ref|YP_004044659.1| - 4.5e-06 25.9 4.3 0.00033 19.8 0.1 2.9 3 0 0 3 3 3 2 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|313122732|ref|YP_004044659.1| - 6.8e-06 25.5 3.7 0.00029 20.2 0.0 3.1 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|313122732|ref|YP_004044659.1| - 0.00028 20.4 1.0 0.059 12.9 0.0 2.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|313122732|ref|YP_004044659.1| - 0.00058 18.8 2.3 0.018 13.9 0.4 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|313122732|ref|YP_004044659.1| - 0.00059 20.0 0.2 0.97 9.7 0.0 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding XdhC_C PF13478.1 gi|313122732|ref|YP_004044659.1| - 0.003 17.8 0.8 0.1 12.9 0.0 2.7 3 0 0 3 3 3 1 XdhC Rossmann domain Trp_halogenase PF04820.9 gi|313122732|ref|YP_004044659.1| - 0.004 15.8 0.1 0.004 15.8 0.1 1.6 2 0 0 2 2 2 1 Tryptophan halogenase TrkA_N PF02254.13 gi|313122732|ref|YP_004044659.1| - 0.0069 16.3 3.0 0.095 12.7 0.0 2.9 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_9 PF13454.1 gi|313122732|ref|YP_004044659.1| - 0.056 13.2 1.9 0.51 10.0 0.1 2.7 2 1 1 3 3 3 0 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|313122732|ref|YP_004044659.1| - 0.19 10.6 0.0 9.7 4.9 0.0 2.5 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Radical_SAM PF04055.16 gi|313122733|ref|YP_004044660.1| - 7.8e-15 55.4 0.0 1.8e-14 54.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Ribonuc_L-PSP PF01042.16 gi|313122734|ref|YP_004044661.1| - 1.8e-39 134.2 0.1 2e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|313122734|ref|YP_004044661.1| - 0.0014 18.5 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease DUF4488 PF14869.1 gi|313122734|ref|YP_004044661.1| - 0.018 14.6 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) NIR_SIR PF01077.17 gi|313122735|ref|YP_004044662.1| - 2.1e-47 160.3 0.0 3.5e-33 114.2 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|313122735|ref|YP_004044662.1| - 3e-30 103.6 0.2 1.1e-13 50.6 0.0 3.5 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|313122735|ref|YP_004044662.1| - 0.025 14.4 0.1 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 DGC domain FrhB_FdhB_C PF04432.8 gi|313122736|ref|YP_004044663.1| - 1.8e-28 98.9 0.0 1.8e-28 98.9 0.0 1.6 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|313122736|ref|YP_004044663.1| - 6.3e-22 77.2 0.0 1.1e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|313122736|ref|YP_004044663.1| - 2.6e-09 36.8 5.1 2.6e-09 36.8 3.5 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313122736|ref|YP_004044663.1| - 8.4e-09 34.6 17.2 1.7e-06 27.3 2.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|313122736|ref|YP_004044663.1| - 9.3e-08 31.7 11.9 9.7e-08 31.6 6.2 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|313122736|ref|YP_004044663.1| - 1.4e-07 31.6 7.1 1.4e-07 31.6 4.9 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|313122736|ref|YP_004044663.1| - 3.2e-06 27.4 8.6 3.2e-06 27.4 6.0 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|313122736|ref|YP_004044663.1| - 2.5e-05 24.9 12.8 0.011 16.4 0.6 4.0 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|313122736|ref|YP_004044663.1| - 2.5e-05 23.8 4.0 2.5e-05 23.8 2.8 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|313122736|ref|YP_004044663.1| - 6.6e-05 22.6 3.1 6.6e-05 22.6 2.2 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|313122736|ref|YP_004044663.1| - 0.00043 20.6 12.5 0.012 16.0 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|313122736|ref|YP_004044663.1| - 0.00079 19.7 1.0 0.012 15.9 0.1 3.1 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|313122736|ref|YP_004044663.1| - 0.0015 19.0 8.3 1.2 9.6 5.8 3.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|313122736|ref|YP_004044663.1| - 0.0044 17.2 12.9 0.01 16.0 3.1 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain TonB_2 PF13103.1 gi|313122736|ref|YP_004044663.1| - 0.019 15.0 0.0 0.074 13.0 0.0 2.0 2 0 0 2 2 2 0 TonB C terminal Fer4_8 PF13183.1 gi|313122736|ref|YP_004044663.1| - 0.02 14.8 11.6 0.02 14.8 8.1 2.6 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|313122736|ref|YP_004044663.1| - 0.042 14.2 12.5 0.35 11.2 2.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain YbjQ_1 PF01906.12 gi|313122737|ref|YP_004044664.1| - 1.2e-32 112.4 2.7 1.4e-32 112.2 1.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|313122737|ref|YP_004044664.1| - 0.042 13.7 0.3 0.086 12.7 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4156) PKD PF00801.15 gi|313122738|ref|YP_004044665.1| - 1e-14 53.9 9.5 3.1e-14 52.4 6.6 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.9 gi|313122738|ref|YP_004044665.1| - 5.4e-12 45.0 9.6 2.2e-11 43.1 6.6 2.1 1 0 0 1 1 1 1 Carbohydrate binding domain Big_3_4 PF13754.1 gi|313122738|ref|YP_004044665.1| - 0.52 10.6 24.8 0.093 13.0 13.5 2.7 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) Big_3 PF07523.7 gi|313122738|ref|YP_004044665.1| - 3.8 7.6 12.9 1.8 8.7 5.9 2.7 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) AAA_25 PF13481.1 gi|313122740|ref|YP_004044666.1| - 1.4e-05 24.5 0.0 0.0039 16.5 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|313122740|ref|YP_004044666.1| - 0.0021 17.5 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|313122740|ref|YP_004044666.1| - 0.006 16.7 0.0 2.1 8.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zot PF05707.7 gi|313122740|ref|YP_004044666.1| - 0.013 15.0 0.1 5.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|313122740|ref|YP_004044666.1| - 0.035 13.3 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_5 PF07728.9 gi|313122740|ref|YP_004044666.1| - 0.076 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|313122740|ref|YP_004044666.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|313122740|ref|YP_004044666.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|313122740|ref|YP_004044666.1| - 0.13 12.4 0.0 0.47 10.6 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_19 PF13245.1 gi|313122740|ref|YP_004044666.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain HTH_38 PF13936.1 gi|313122744|ref|YP_004044670.1| - 0.00029 20.3 0.0 0.00046 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|313122744|ref|YP_004044670.1| - 0.028 14.0 0.1 0.11 12.2 0.1 1.9 1 1 0 1 1 1 0 Homeodomain-like domain Terminase_5 PF06056.7 gi|313122744|ref|YP_004044670.1| - 0.045 13.3 0.1 0.097 12.2 0.0 1.6 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Plectin PF00681.15 gi|313122744|ref|YP_004044670.1| - 0.13 11.7 0.0 0.3 10.6 0.0 1.7 1 1 0 1 1 1 0 Plectin repeat UvrD_C PF13361.1 gi|313122747|ref|YP_004044673.1| - 1e-09 38.3 0.0 7e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|313122747|ref|YP_004044673.1| - 1.8e-08 34.4 0.0 3.8e-08 33.3 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|313122747|ref|YP_004044673.1| - 8.6e-07 28.7 0.0 0.042 13.3 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|313122747|ref|YP_004044673.1| - 1.6e-06 27.6 0.0 0.02 14.1 0.0 2.6 2 1 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.1 gi|313122747|ref|YP_004044673.1| - 0.00025 20.7 0.0 0.0018 17.9 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|313122747|ref|YP_004044673.1| - 0.00064 19.3 0.0 0.12 11.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|313122747|ref|YP_004044673.1| - 0.0089 16.1 0.0 5.9 7.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313122747|ref|YP_004044673.1| - 0.058 13.3 0.1 1.1 9.1 0.0 2.9 3 1 1 4 4 4 0 AAA ATPase domain AAA PF00004.24 gi|313122747|ref|YP_004044673.1| - 0.18 11.9 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|313122747|ref|YP_004044673.1| - 0.21 10.6 0.1 3.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus zf-CHC2 PF01807.15 gi|313122748|ref|YP_004044674.1| - 0.18 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 CHC2 zinc finger Phage_integrase PF00589.17 gi|313122749|ref|YP_004044675.1| - 5.2e-14 52.2 0.3 2.9e-13 49.8 0.2 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.17 gi|313122750|ref|YP_004044676.1| - 3e-10 40.0 0.0 1.5e-09 37.7 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family zf-primase PF09329.6 gi|313122750|ref|YP_004044676.1| - 1.1e-05 24.8 2.5 0.00089 18.8 0.4 2.4 2 0 0 2 2 2 2 Primase zinc finger Prok-RING_1 PF14446.1 gi|313122753|ref|YP_004044679.1| - 0.048 13.3 1.6 0.074 12.7 1.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Phage_integrase PF00589.17 gi|313122755|ref|YP_004044681.1| - 4.4e-26 91.5 0.0 5.9e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family RHH_1 PF01402.16 gi|313122756|ref|YP_004044682.1| - 0.015 15.2 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Plasmid_stabil PF05016.9 gi|313122757|ref|YP_004044683.1| - 4.3e-06 27.0 0.1 5.7e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF217 PF02697.9 gi|313122758|ref|YP_004044684.1| - 0.0016 18.6 0.1 0.0032 17.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF2360 PF10152.4 gi|313122758|ref|YP_004044684.1| - 0.084 13.1 0.5 0.1 12.9 0.3 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) RHH_1 PF01402.16 gi|313122758|ref|YP_004044684.1| - 0.085 12.7 0.6 0.56 10.1 0.2 2.3 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family Antitoxin-MazE PF04014.13 gi|313122761|ref|YP_004044687.1| - 0.00026 20.6 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TOBE PF03459.12 gi|313122761|ref|YP_004044687.1| - 0.025 14.6 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 TOBE domain