# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Rep_fac_C PF08542.11 gi|313124789|ref|YP_004035053.1| - 5.3e-12 46.0 0.0 1.3e-11 44.7 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|313124789|ref|YP_004035053.1| - 7.1e-12 45.9 0.0 1.6e-11 44.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|313124789|ref|YP_004035053.1| - 1.7e-10 41.0 0.0 2.9e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|313124789|ref|YP_004035053.1| - 3.5e-08 33.8 0.0 1.3e-07 32.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313124789|ref|YP_004035053.1| - 3e-06 27.7 1.3 8.3e-06 26.3 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|313124789|ref|YP_004035053.1| - 7.5e-05 22.8 0.0 0.0002 21.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|313124789|ref|YP_004035053.1| - 0.00014 21.6 0.0 0.0037 17.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|313124789|ref|YP_004035053.1| - 0.00015 22.1 0.8 0.014 15.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|313124789|ref|YP_004035053.1| - 0.00019 21.5 0.5 0.0012 18.9 0.1 2.3 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|313124789|ref|YP_004035053.1| - 0.00051 20.6 0.0 0.0012 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|313124789|ref|YP_004035053.1| - 0.001 18.9 0.0 0.0015 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|313124789|ref|YP_004035053.1| - 0.0019 18.1 0.0 0.008 16.1 0.0 2.0 1 1 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 gi|313124789|ref|YP_004035053.1| - 0.0019 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|313124789|ref|YP_004035053.1| - 0.0026 17.5 0.0 0.0099 15.6 0.0 1.9 1 1 1 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|313124789|ref|YP_004035053.1| - 0.007 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|313124789|ref|YP_004035053.1| - 0.0092 15.9 0.0 3.3 7.6 0.0 2.9 3 0 0 3 3 3 1 NTPase AAA_30 PF13604.6 gi|313124789|ref|YP_004035053.1| - 0.02 14.6 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|313124789|ref|YP_004035053.1| - 0.035 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_tran PF00005.27 gi|313124789|ref|YP_004035053.1| - 0.042 14.4 0.0 0.12 12.9 0.0 1.9 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|313124789|ref|YP_004035053.1| - 0.061 13.7 0.0 0.26 11.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Zeta_toxin PF06414.12 gi|313124789|ref|YP_004035053.1| - 0.066 12.5 0.0 0.28 10.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.6 gi|313124789|ref|YP_004035053.1| - 0.073 13.2 0.1 0.14 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|313124789|ref|YP_004035053.1| - 0.076 13.3 0.1 0.27 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|313124789|ref|YP_004035053.1| - 0.079 13.1 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) TsaE PF02367.17 gi|313124789|ref|YP_004035053.1| - 0.083 12.9 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Bac_DnaA PF00308.18 gi|313124789|ref|YP_004035053.1| - 0.087 12.7 0.0 20 4.9 0.1 2.6 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_assoc_2 PF16193.5 gi|313124789|ref|YP_004035053.1| - 0.14 12.5 1.2 0.47 10.8 0.9 2.0 1 1 0 1 1 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|313124789|ref|YP_004035053.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DNA_pol3_delta PF06144.13 gi|313124789|ref|YP_004035053.1| - 0.18 11.5 0.0 0.6 9.9 0.0 1.8 2 0 0 2 2 2 0 DNA polymerase III, delta subunit PS_Dcarbxylase PF02666.15 gi|313124790|ref|YP_004035054.1| - 2.4e-25 89.3 0.0 2.1e-20 73.2 0.0 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase MitoNEET_N PF10660.9 gi|313124791|ref|YP_004035055.1| - 0.081 13.0 0.5 0.081 13.0 0.5 1.9 1 1 1 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus Fumerase_C PF05683.12 gi|313124791|ref|YP_004035055.1| - 0.13 11.6 0.0 0.14 11.4 0.0 1.0 1 0 0 1 1 1 0 Fumarase C-terminus Orai-1 PF07856.12 gi|313124792|ref|YP_004035056.1| - 0.48 10.1 4.4 0.46 10.2 1.5 1.9 2 0 0 2 2 2 0 Mediator of CRAC channel activity UPF0020 PF01170.18 gi|313124793|ref|YP_004035057.1| - 1.3e-19 70.7 0.1 1.1e-18 67.7 0.1 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|313124793|ref|YP_004035057.1| - 1.5e-06 28.8 0.1 3.3e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|313124793|ref|YP_004035057.1| - 2.7e-05 24.3 0.0 4.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.12 gi|313124793|ref|YP_004035057.1| - 0.00016 22.2 0.0 0.00037 21.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|313124793|ref|YP_004035057.1| - 0.003 17.2 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|313124793|ref|YP_004035057.1| - 0.046 13.5 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|313124793|ref|YP_004035057.1| - 0.26 10.8 0.0 0.36 10.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF2784 PF10861.8 gi|313124794|ref|YP_004035058.1| - 0.051 13.6 0.1 0.092 12.8 0.0 1.5 1 1 0 1 1 1 0 Protein of Unknown function (DUF2784) TBP PF00352.21 gi|313124795|ref|YP_004035059.1| - 4.4e-56 186.8 0.0 1.5e-27 95.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|313124795|ref|YP_004035059.1| - 0.00024 21.2 0.0 0.43 10.7 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|313124795|ref|YP_004035059.1| - 0.00039 20.7 0.0 0.04 14.2 0.0 2.2 2 0 0 2 2 2 1 Type IVb secretion, IcmS, effector-recruitment PucR PF07905.11 gi|313124795|ref|YP_004035059.1| - 0.034 14.4 0.0 2.3 8.5 0.0 2.4 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family DUF218 PF02698.17 gi|313124795|ref|YP_004035059.1| - 0.089 12.8 0.0 0.7 9.9 0.0 2.0 1 1 1 2 2 2 0 DUF218 domain CPBP PF02517.16 gi|313124797|ref|YP_004035061.1| - 4.2e-09 36.7 25.7 8.2e-08 32.5 22.0 3.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Amastin PF07344.11 gi|313124797|ref|YP_004035061.1| - 0.6 9.9 7.7 0.073 12.9 2.1 2.1 2 0 0 2 2 2 0 Amastin surface glycoprotein DUF3094 PF11293.8 gi|313124797|ref|YP_004035061.1| - 2.1 8.1 5.0 0.68 9.7 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) HisG PF01634.18 gi|313124798|ref|YP_004035062.1| - 1.3e-48 164.9 0.1 2.1e-48 164.3 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|313124798|ref|YP_004035062.1| - 2e-29 101.6 0.4 1.7e-28 98.6 0.1 2.2 2 0 0 2 2 2 1 HisG, C-terminal domain NMT1 PF09084.11 gi|313124798|ref|YP_004035062.1| - 0.002 18.1 0.1 0.054 13.4 0.1 2.1 1 1 1 2 2 2 2 NMT1/THI5 like HTH_24 PF13412.6 gi|313124799|ref|YP_004035063.1| - 3.3e-12 45.8 0.0 6.4e-07 28.8 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313124799|ref|YP_004035063.1| - 1.6e-07 31.1 0.0 0.00035 20.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313124799|ref|YP_004035063.1| - 2.4e-07 30.7 4.7 9e-06 25.7 1.2 2.6 2 1 1 3 3 3 1 Helix-turn-helix domain MarR PF01047.22 gi|313124799|ref|YP_004035063.1| - 7.8e-06 25.7 0.1 0.00039 20.3 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|313124799|ref|YP_004035063.1| - 0.00011 22.0 2.9 0.022 14.6 0.3 2.5 3 0 0 3 3 3 2 MarR family TrmB PF01978.19 gi|313124799|ref|YP_004035063.1| - 0.00038 20.3 0.0 0.0014 18.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|313124799|ref|YP_004035063.1| - 0.00087 19.4 0.0 0.01 16.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313124799|ref|YP_004035063.1| - 0.002 17.9 0.4 0.016 15.0 0.2 2.4 2 1 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313124799|ref|YP_004035063.1| - 0.013 15.6 0.0 0.063 13.5 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|313124799|ref|YP_004035063.1| - 0.015 15.3 0.2 0.044 13.8 0.2 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain BLACT_WH PF17778.1 gi|313124799|ref|YP_004035063.1| - 0.045 13.7 0.3 0.35 10.9 0.1 2.3 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain HTH_10 PF04967.12 gi|313124799|ref|YP_004035063.1| - 0.065 13.0 0.1 0.52 10.1 0.0 2.4 3 0 0 3 3 3 0 HTH DNA binding domain Penicillinase_R PF03965.16 gi|313124799|ref|YP_004035063.1| - 0.14 12.5 0.0 7.8 6.9 0.0 2.2 1 1 1 2 2 2 0 Penicillinase repressor Amidohydro_1 PF01979.20 gi|313124800|ref|YP_004035064.1| - 5.5e-67 226.5 3.9 6.5e-67 226.3 3.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313124800|ref|YP_004035064.1| - 3.1e-27 96.2 17.7 2.6e-21 76.7 11.0 2.5 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|313124800|ref|YP_004035064.1| - 0.00087 18.7 0.0 0.0019 17.6 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.21 gi|313124800|ref|YP_004035064.1| - 0.039 13.3 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase AdoHcyase PF05221.17 gi|313124801|ref|YP_004035065.1| - 1.6e-51 175.3 0.0 4.7e-26 91.6 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|313124801|ref|YP_004035065.1| - 2.7e-48 164.1 1.0 4e-48 163.5 0.6 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|313124801|ref|YP_004035065.1| - 2e-10 40.3 0.2 3.5e-10 39.5 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|313124801|ref|YP_004035065.1| - 1.5e-06 27.9 1.3 2.9e-06 27.0 0.2 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|313124801|ref|YP_004035065.1| - 0.0067 16.5 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|313124801|ref|YP_004035065.1| - 0.025 14.8 0.1 0.057 13.7 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Hjc PF01870.18 gi|313124803|ref|YP_004035067.1| - 1e-30 105.5 0.0 1.3e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.21 gi|313124803|ref|YP_004035067.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 NHL repeat zf-ribbon_3 PF13248.6 gi|313124804|ref|YP_004035068.1| - 0.0024 17.2 1.4 0.54 9.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Yippee-Mis18 PF03226.14 gi|313124804|ref|YP_004035068.1| - 0.012 15.8 1.8 1.8 8.8 0.1 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_13 PF09855.9 gi|313124804|ref|YP_004035068.1| - 0.013 15.7 0.7 0.016 15.3 0.7 1.1 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C2H2_3 PF13878.6 gi|313124804|ref|YP_004035068.1| - 0.021 14.6 1.1 0.34 10.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Lar_restr_allev PF14354.6 gi|313124804|ref|YP_004035068.1| - 0.05 14.0 2.2 0.95 9.9 2.2 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|313124804|ref|YP_004035068.1| - 0.078 13.0 2.0 0.12 12.4 2.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|313124804|ref|YP_004035068.1| - 0.078 13.0 1.0 0.38 10.8 1.0 1.8 1 1 0 1 1 1 0 CpXC protein Zn_Tnp_IS1 PF03811.13 gi|313124804|ref|YP_004035068.1| - 0.082 12.6 2.0 0.12 12.1 0.3 1.9 2 0 0 2 2 2 0 InsA N-terminal domain DNA_ligase_ZBD PF03119.16 gi|313124804|ref|YP_004035068.1| - 0.083 12.9 0.1 0.083 12.9 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|313124804|ref|YP_004035068.1| - 0.13 11.6 1.1 0.36 10.2 0.1 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|313124804|ref|YP_004035068.1| - 0.17 11.5 1.1 2.5 7.8 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|313124804|ref|YP_004035068.1| - 0.18 11.9 3.0 0.41 10.8 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|313124805|ref|YP_004035069.1| - 0.0031 16.9 1.6 0.62 9.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|313124805|ref|YP_004035069.1| - 0.01 15.7 0.3 3.2 7.7 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF3280 PF11684.8 gi|313124805|ref|YP_004035069.1| - 0.049 14.0 0.0 0.057 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) zinc_ribbon_13 PF09855.9 gi|313124805|ref|YP_004035069.1| - 0.054 13.7 0.2 0.076 13.2 0.2 1.3 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Arc_trans_TRASH PF08394.10 gi|313124805|ref|YP_004035069.1| - 0.055 13.8 0.1 2.1 8.7 0.0 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain UPF0547 PF10571.9 gi|313124805|ref|YP_004035069.1| - 0.092 12.8 3.9 0.11 12.6 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 SWIM PF04434.17 gi|313124806|ref|YP_004035070.1| - 8.9e-05 22.1 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 SWIM zinc finger PapC_N PF13954.6 gi|313124807|ref|YP_004035071.1| - 0.023 14.7 0.1 0.37 10.8 0.1 2.2 1 1 1 2 2 2 0 PapC N-terminal domain ABC_tran_CTD PF16326.5 gi|313124807|ref|YP_004035071.1| - 0.041 14.1 2.7 0.099 12.9 2.7 1.7 1 0 0 1 1 1 0 ABC transporter C-terminal domain MukB PF04310.12 gi|313124807|ref|YP_004035071.1| - 0.082 12.7 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal FadA PF09403.10 gi|313124807|ref|YP_004035071.1| - 1.1 9.8 4.7 0.39 11.2 1.8 1.8 2 0 0 2 2 2 0 Adhesion protein FadA PGF-CTERM PF18204.1 gi|313124808|ref|YP_004035072.1| - 7.8e-07 28.9 5.6 7.8e-07 28.9 5.6 2.4 3 0 0 3 3 3 1 PGF-CTERM motif DUF4897 PF16238.5 gi|313124808|ref|YP_004035072.1| - 8.2e-06 25.7 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) DUF5455 PF17537.2 gi|313124810|ref|YP_004035074.1| - 0.023 15.1 0.9 0.023 15.1 0.9 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5455) Tmemb_161AB PF10268.9 gi|313124810|ref|YP_004035074.1| - 0.2 10.3 0.6 0.2 10.3 0.6 1.0 1 0 0 1 1 1 0 Predicted transmembrane protein 161AB DUF2207 PF09972.9 gi|313124810|ref|YP_004035074.1| - 6.6 5.4 5.3 6.6 5.4 5.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DNA_primase_lrg PF04104.14 gi|313124811|ref|YP_004035075.1| - 3e-17 62.9 0.0 6.5e-17 61.8 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF2267 PF10025.9 gi|313124811|ref|YP_004035075.1| - 1.4 9.2 7.6 0.25 11.6 3.1 2.2 2 2 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) TauE PF01925.19 gi|313124813|ref|YP_004035077.1| - 0.0034 17.0 5.3 0.0034 17.0 5.3 1.8 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE PCNA_N PF00705.18 gi|313124814|ref|YP_004035078.1| - 5.1e-10 39.1 2.5 8.5e-10 38.4 0.6 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|313124814|ref|YP_004035078.1| - 6.5e-09 36.0 0.0 2.8e-07 30.8 0.0 2.5 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.15 gi|313124814|ref|YP_004035078.1| - 0.12 12.2 1.3 0.51 10.2 0.3 2.2 2 1 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain Rad9 PF04139.13 gi|313124814|ref|YP_004035078.1| - 0.16 11.4 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad9 DUF4044 PF13253.6 gi|313124820|ref|YP_004035084.1| - 0.5 9.9 3.8 0.66 9.5 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) TraB PF01963.17 gi|313124821|ref|YP_004035085.1| - 1.9e-19 70.6 0.0 2.9e-12 47.1 0.0 2.1 2 0 0 2 2 2 2 TraB family DUF1290 PF06947.12 gi|313124821|ref|YP_004035085.1| - 0.15 12.1 2.3 0.86 9.7 2.3 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1290) bPH_6 PF10756.9 gi|313124821|ref|YP_004035085.1| - 2.6 8.2 5.9 0.69 10.0 0.5 2.7 3 0 0 3 3 3 0 Bacterial PH domain HTH_20 PF12840.7 gi|313124822|ref|YP_004035086.1| - 0.00091 19.2 0.0 0.0089 16.1 0.0 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain FtsJ PF01728.19 gi|313124823|ref|YP_004035087.1| - 6.1e-56 189.3 0.0 1e-55 188.6 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|313124823|ref|YP_004035087.1| - 2.4e-12 46.7 0.8 6.2e-12 45.3 0.8 1.8 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|313124823|ref|YP_004035087.1| - 1e-05 25.4 0.0 6.3e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313124823|ref|YP_004035087.1| - 0.00062 19.6 0.0 0.0024 17.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313124823|ref|YP_004035087.1| - 0.026 15.2 0.3 0.13 13.0 0.3 2.3 1 1 1 2 2 2 0 Methyltransferase domain TrkA_N PF02254.18 gi|313124823|ref|YP_004035087.1| - 0.12 12.7 0.5 0.25 11.6 0.5 1.5 1 1 0 1 1 1 0 TrkA-N domain OrfB_Zn_ribbon PF07282.11 gi|313124824|ref|YP_004035088.1| - 4e-23 81.1 1.8 8e-23 80.2 1.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313124824|ref|YP_004035088.1| - 2.2e-21 76.3 0.1 6.7e-21 74.7 0.0 1.8 2 0 0 2 2 2 1 Probable transposase C1_2 PF03107.16 gi|313124824|ref|YP_004035088.1| - 0.0039 17.5 1.6 0.01 16.2 1.6 1.7 1 0 0 1 1 1 1 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|313124824|ref|YP_004035088.1| - 0.1 12.6 3.8 0.23 11.5 3.8 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|313124824|ref|YP_004035088.1| - 0.28 11.3 4.3 0.096 12.8 0.7 2.1 3 0 0 3 3 3 0 Ribosomal L37ae protein family Vut_1 PF02592.15 gi|313124825|ref|YP_004035089.1| - 3.7e-49 166.9 6.2 3.7e-49 166.9 6.2 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter DUF2568 PF10823.8 gi|313124825|ref|YP_004035089.1| - 0.76 10.1 10.6 0.048 13.9 2.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2568) RHH_1 PF01402.21 gi|313124826|ref|YP_004035090.1| - 6.7e-05 22.7 2.2 9.4e-05 22.2 0.5 2.0 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|313124826|ref|YP_004035090.1| - 0.014 15.6 0.1 0.014 15.6 0.1 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family DUF1515 PF07439.11 gi|313124826|ref|YP_004035090.1| - 0.12 12.5 0.2 0.12 12.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) TatC PF00902.18 gi|313124827|ref|YP_004035091.1| - 9e-71 238.0 41.1 8.6e-41 140.0 13.4 2.3 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) TatC PF00902.18 gi|313124828|ref|YP_004035092.1| - 6.4e-37 127.4 14.5 7.9e-37 127.1 14.5 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Asn_synthase PF00733.21 gi|313124829|ref|YP_004035093.1| - 3.3e-10 40.2 0.1 5.3e-10 39.5 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|313124829|ref|YP_004035093.1| - 1.5e-09 37.1 0.0 2.1e-06 26.8 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|313124829|ref|YP_004035093.1| - 1.2e-08 34.4 0.0 2.1e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|313124829|ref|YP_004035093.1| - 1.5e-05 24.6 0.0 0.00021 20.8 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|313124829|ref|YP_004035093.1| - 0.00056 19.3 0.0 0.0015 17.9 0.0 1.6 2 0 0 2 2 2 1 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|313124829|ref|YP_004035093.1| - 0.0037 17.0 0.0 0.023 14.5 0.0 2.1 1 1 1 2 2 2 1 PP-loop family QueH PF02677.14 gi|313124829|ref|YP_004035093.1| - 0.011 15.9 0.1 0.03 14.4 0.0 1.7 2 0 0 2 2 2 0 Epoxyqueuosine reductase QueH MutS_V PF00488.21 gi|313124830|ref|YP_004035094.1| - 2.9e-08 34.0 0.1 6.2e-08 32.9 0.0 1.6 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.6 gi|313124830|ref|YP_004035094.1| - 2.2e-05 25.0 2.8 8.1e-05 23.2 0.6 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|313124830|ref|YP_004035094.1| - 0.00072 19.3 0.9 0.007 16.2 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_29 PF13555.6 gi|313124830|ref|YP_004035094.1| - 0.14 12.0 0.1 0.31 10.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|313124832|ref|YP_004035096.1| - 3.8e-12 46.9 1.9 7.3e-11 42.7 0.3 2.9 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313124832|ref|YP_004035096.1| - 4e-09 36.9 0.0 7.8e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|313124832|ref|YP_004035096.1| - 3.6e-05 23.6 0.1 0.00014 21.7 0.0 2.1 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|313124832|ref|YP_004035096.1| - 9.3e-05 22.9 0.0 0.00026 21.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|313124832|ref|YP_004035096.1| - 0.00077 19.6 0.0 0.0013 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313124832|ref|YP_004035096.1| - 0.0011 18.7 0.1 0.0066 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|313124832|ref|YP_004035096.1| - 0.0014 18.5 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|313124832|ref|YP_004035096.1| - 0.0053 16.7 0.0 0.0092 15.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|313124832|ref|YP_004035096.1| - 0.0081 15.2 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|313124832|ref|YP_004035096.1| - 0.0099 15.8 0.2 0.019 14.9 0.2 1.5 1 0 0 1 1 1 1 NTPase AAA_7 PF12775.7 gi|313124832|ref|YP_004035096.1| - 0.012 15.1 0.0 0.064 12.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region TIP49_C PF17856.1 gi|313124832|ref|YP_004035096.1| - 0.013 15.6 0.0 0.033 14.3 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_6 PF12774.7 gi|313124832|ref|YP_004035096.1| - 0.016 14.2 0.0 0.027 13.5 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Rad17 PF03215.15 gi|313124832|ref|YP_004035096.1| - 0.017 15.1 0.0 0.065 13.1 0.0 2.1 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_14 PF13173.6 gi|313124832|ref|YP_004035096.1| - 0.021 14.9 0.0 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|313124832|ref|YP_004035096.1| - 0.027 14.2 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|313124832|ref|YP_004035096.1| - 0.029 13.6 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|313124832|ref|YP_004035096.1| - 0.03 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313124832|ref|YP_004035096.1| - 0.035 14.7 0.0 0.074 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_35 PF14516.6 gi|313124832|ref|YP_004035096.1| - 0.048 12.5 0.0 0.63 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_5 PF07728.14 gi|313124832|ref|YP_004035096.1| - 0.075 13.0 0.1 0.18 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.18 gi|313124832|ref|YP_004035096.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.17 gi|313124832|ref|YP_004035096.1| - 0.093 12.5 0.5 1.5 8.5 0.5 2.3 1 1 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|313124832|ref|YP_004035096.1| - 0.11 12.9 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|313124832|ref|YP_004035096.1| - 0.13 12.0 0.0 0.5 10.1 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|313124832|ref|YP_004035096.1| - 0.15 12.6 0.0 0.37 11.3 0.0 1.7 2 0 0 2 2 2 0 ABC transporter Rib_5-P_isom_A PF06026.14 gi|313124833|ref|YP_004035097.1| - 1.4e-65 220.1 0.1 1.7e-65 219.8 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|313124833|ref|YP_004035097.1| - 2.3e-07 30.9 0.8 2.9e-05 24.1 0.1 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain YcxB PF14317.6 gi|313124834|ref|YP_004035098.1| - 0.0065 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 YcxB-like protein DUF4179 PF13786.6 gi|313124834|ref|YP_004035098.1| - 2.5 8.7 4.3 2.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) DUF1931 PF09123.11 gi|313124835|ref|YP_004035099.1| - 4.7e-05 23.5 1.2 5e-05 23.4 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|313124835|ref|YP_004035099.1| - 0.00042 20.6 0.1 0.0006 20.0 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DctP PF03480.13 gi|313124835|ref|YP_004035099.1| - 0.014 14.7 0.1 0.015 14.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Histone PF00125.24 gi|313124835|ref|YP_004035099.1| - 0.023 15.0 0.1 0.023 15.0 0.1 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Peptidase_M41 PF01434.18 gi|313124835|ref|YP_004035099.1| - 0.085 12.7 0.1 0.092 12.6 0.1 1.1 1 0 0 1 1 1 0 Peptidase family M41 AIRC PF00731.20 gi|313124836|ref|YP_004035100.1| - 4.9e-15 55.4 3.8 4.9e-15 55.4 3.8 2.0 2 0 0 2 2 2 1 AIR carboxylase zf-RING_7 PF02591.15 gi|313124837|ref|YP_004035101.1| - 0.0011 19.1 2.0 0.6 10.4 0.1 2.2 2 0 0 2 2 2 2 C4-type zinc ribbon domain DZR PF12773.7 gi|313124837|ref|YP_004035101.1| - 0.0044 17.0 0.3 0.0056 16.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|313124837|ref|YP_004035101.1| - 0.0064 16.4 0.4 0.02 14.8 0.4 1.7 1 1 0 1 1 1 1 PhnA Zinc-Ribbon Lar_restr_allev PF14354.6 gi|313124837|ref|YP_004035101.1| - 0.0081 16.5 0.4 0.0093 16.3 0.4 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|313124837|ref|YP_004035101.1| - 0.017 14.5 3.3 0.53 9.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3268 PF11672.8 gi|313124837|ref|YP_004035101.1| - 0.019 15.3 0.1 0.02 15.2 0.1 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-IS66 PF13005.7 gi|313124837|ref|YP_004035101.1| - 0.019 15.3 0.4 6.3 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.11 gi|313124837|ref|YP_004035101.1| - 0.021 14.7 0.4 0.027 14.4 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|313124837|ref|YP_004035101.1| - 0.031 14.4 3.3 0.24 11.5 3.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain C1_1 PF00130.22 gi|313124837|ref|YP_004035101.1| - 0.032 14.1 0.2 0.046 13.6 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RNA_POL_M_15KD PF02150.16 gi|313124837|ref|YP_004035101.1| - 0.041 13.8 0.3 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|313124837|ref|YP_004035101.1| - 0.045 13.5 0.2 2.6 7.9 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger ATPase-cat_bd PF12156.8 gi|313124837|ref|YP_004035101.1| - 0.079 13.7 0.6 0.085 13.6 0.6 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase zf_UBZ PF18439.1 gi|313124837|ref|YP_004035101.1| - 0.093 12.3 0.4 0.99 9.1 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 gi|313124837|ref|YP_004035101.1| - 0.32 11.0 2.4 1.9 8.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313124837|ref|YP_004035101.1| - 0.53 10.3 4.0 7.3 6.7 3.9 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|313124837|ref|YP_004035101.1| - 0.77 9.8 5.2 3.9 7.5 0.7 2.1 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger SurE PF01975.17 gi|313124838|ref|YP_004035102.1| - 7e-45 153.2 0.0 8.8e-45 152.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE GIY-YIG PF01541.24 gi|313124839|ref|YP_004035103.1| - 4.4e-18 65.3 0.0 5.1e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|313124839|ref|YP_004035103.1| - 0.013 16.0 0.1 0.015 15.8 0.1 1.2 1 0 0 1 1 1 0 T5orf172 domain FMN_red PF03358.15 gi|313124840|ref|YP_004035104.1| - 2.5e-32 111.8 0.0 3.1e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|313124840|ref|YP_004035104.1| - 2.3e-08 34.0 0.0 4.3e-08 33.1 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|313124840|ref|YP_004035104.1| - 0.015 15.6 0.0 0.032 14.5 0.0 1.5 2 0 0 2 2 2 0 Flavodoxin domain PGM_PMM_I PF02878.16 gi|313124841|ref|YP_004035105.1| - 4.6e-37 126.8 0.0 8.1e-37 126.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|313124841|ref|YP_004035105.1| - 1.8e-26 92.7 0.1 3.6e-26 91.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|313124841|ref|YP_004035105.1| - 8.6e-24 83.9 0.1 1.6e-23 83.1 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|313124841|ref|YP_004035105.1| - 9e-13 48.2 0.1 2.8e-12 46.6 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acetyltransf_10 PF13673.7 gi|313124842|ref|YP_004035106.1| - 7.1e-11 42.1 0.0 8.6e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313124842|ref|YP_004035106.1| - 1.2e-10 41.7 0.0 1.6e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313124842|ref|YP_004035106.1| - 1e-08 35.4 0.0 1.3e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|313124842|ref|YP_004035106.1| - 7.8e-07 29.2 0.3 7.5e-06 26.1 0.3 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|313124842|ref|YP_004035106.1| - 8.3e-06 25.6 2.4 1.1e-05 25.2 2.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|313124842|ref|YP_004035106.1| - 0.027 14.6 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|313124842|ref|YP_004035106.1| - 0.029 14.3 0.1 0.053 13.5 0.1 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Amidohydro_2 PF04909.14 gi|313124842|ref|YP_004035106.1| - 0.055 13.3 0.6 0.065 13.0 0.6 1.1 1 0 0 1 1 1 0 Amidohydrolase FR47 PF08445.10 gi|313124842|ref|YP_004035106.1| - 0.061 13.3 0.1 0.13 12.2 0.1 1.6 2 0 0 2 2 2 0 FR47-like protein AhpC-TSA PF00578.21 gi|313124843|ref|YP_004035107.1| - 1.2e-17 64.0 0.0 1.4e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313124843|ref|YP_004035107.1| - 4.3e-07 29.7 0.0 5.4e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|313124843|ref|YP_004035107.1| - 0.041 14.0 0.0 0.086 13.0 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|313124843|ref|YP_004035107.1| - 0.11 12.8 0.1 0.12 12.7 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin-like Rep_fac_C PF08542.11 gi|313124845|ref|YP_004035109.1| - 1.9e-24 85.9 0.1 8.1e-24 83.8 0.0 2.1 2 0 0 2 2 2 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|313124845|ref|YP_004035109.1| - 5.7e-18 65.2 0.0 3.4e-12 46.4 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|313124845|ref|YP_004035109.1| - 5.8e-18 65.6 0.0 4.8e-16 59.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313124845|ref|YP_004035109.1| - 1e-08 35.7 1.1 6.2e-06 26.7 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|313124845|ref|YP_004035109.1| - 5.3e-08 32.8 0.0 1.6e-06 27.9 0.0 2.5 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|313124845|ref|YP_004035109.1| - 3.7e-07 30.1 0.0 9.5e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|313124845|ref|YP_004035109.1| - 2.8e-06 27.6 0.2 8.7e-06 26.0 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|313124845|ref|YP_004035109.1| - 3.4e-05 23.8 0.0 7.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|313124845|ref|YP_004035109.1| - 0.00019 21.5 0.0 0.00036 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313124845|ref|YP_004035109.1| - 0.0003 21.1 0.2 0.86 9.9 0.1 2.6 1 1 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|313124845|ref|YP_004035109.1| - 0.00084 19.4 0.0 0.0049 16.9 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|313124845|ref|YP_004035109.1| - 0.001 18.7 0.0 0.0028 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|313124845|ref|YP_004035109.1| - 0.0013 18.6 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|313124845|ref|YP_004035109.1| - 0.0021 18.0 0.0 0.025 14.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|313124845|ref|YP_004035109.1| - 0.0034 17.1 0.0 0.2 11.3 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|313124845|ref|YP_004035109.1| - 0.0035 16.8 0.0 0.43 9.9 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|313124845|ref|YP_004035109.1| - 0.0035 17.1 0.0 0.016 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|313124845|ref|YP_004035109.1| - 0.011 16.3 0.0 0.047 14.2 0.0 2.0 1 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|313124845|ref|YP_004035109.1| - 0.016 15.7 0.1 0.032 14.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|313124845|ref|YP_004035109.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|313124845|ref|YP_004035109.1| - 0.028 14.3 0.0 1.3 8.9 0.0 2.4 2 1 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|313124845|ref|YP_004035109.1| - 0.055 13.0 0.0 0.14 11.7 0.0 1.7 1 1 1 2 2 2 0 P-loop containing dynein motor region DDE_Tnp_1 PF01609.21 gi|313124845|ref|YP_004035109.1| - 0.073 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain SRP54 PF00448.22 gi|313124845|ref|YP_004035109.1| - 0.074 12.7 0.1 0.36 10.4 0.0 2.1 2 1 1 3 3 3 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|313124845|ref|YP_004035109.1| - 0.12 11.8 0.0 2.1 7.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.22 gi|313124845|ref|YP_004035109.1| - 0.14 12.6 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|313124845|ref|YP_004035109.1| - 0.32 10.8 1.0 6.6 6.5 0.0 2.7 1 1 1 3 3 3 0 DEAD/DEAH box helicase GAF_2 PF13185.6 gi|313124846|ref|YP_004035110.1| - 1.9e-23 83.3 2.9 9.4e-11 42.2 0.1 3.0 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|313124846|ref|YP_004035110.1| - 5.2e-13 49.5 0.0 1.2e-12 48.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313124846|ref|YP_004035110.1| - 5.5e-12 45.5 1.4 2.7e-11 43.3 1.4 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|313124846|ref|YP_004035110.1| - 3.3e-08 34.2 0.1 0.0017 19.0 0.0 2.8 3 0 0 3 3 3 2 GAF domain PAS_4 PF08448.10 gi|313124846|ref|YP_004035110.1| - 1.5e-05 25.2 1.9 6.1e-05 23.2 0.1 2.9 2 1 1 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|313124846|ref|YP_004035110.1| - 0.00012 22.0 0.0 0.00055 19.9 0.0 2.2 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 gi|313124846|ref|YP_004035110.1| - 0.00016 22.0 0.1 0.0041 17.5 0.1 2.6 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|313124846|ref|YP_004035110.1| - 0.0006 19.8 0.0 0.0016 18.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|313124846|ref|YP_004035110.1| - 0.0013 18.9 0.0 0.0052 17.0 0.0 2.1 2 0 0 2 2 2 1 PAS domain DivIVA PF05103.13 gi|313124846|ref|YP_004035110.1| - 0.078 13.1 1.1 0.18 11.9 0.2 2.0 2 0 0 2 2 2 0 DivIVA protein PMC2NT PF08066.12 gi|313124846|ref|YP_004035110.1| - 4.6 8.0 5.8 9 7.1 0.9 3.7 5 0 0 5 5 5 0 PMC2NT (NUC016) domain TspO_MBR PF03073.15 gi|313124847|ref|YP_004035111.1| - 3e-43 147.1 17.7 3.5e-43 146.9 17.7 1.0 1 0 0 1 1 1 1 TspO/MBR family TctB PF07331.11 gi|313124847|ref|YP_004035111.1| - 0.27 11.5 13.7 0.35 11.1 13.7 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family tRNA-synt_2c PF01411.19 gi|313124848|ref|YP_004035112.1| - 1e-117 394.0 0.1 1.4e-117 393.6 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|313124848|ref|YP_004035112.1| - 4.5e-18 66.0 1.0 1.1e-17 64.7 1.0 1.8 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|313124848|ref|YP_004035112.1| - 2.4e-14 53.1 1.5 4.8e-14 52.2 1.5 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain RXLR PF16810.5 gi|313124848|ref|YP_004035112.1| - 0.14 12.6 0.0 0.38 11.2 0.0 1.6 1 0 0 1 1 1 0 RXLR phytopathogen effector protein, Avirulence activity tRNA-synt_2e PF02091.15 gi|313124848|ref|YP_004035112.1| - 0.47 9.7 1.8 0.61 9.3 0.5 1.8 2 1 0 2 2 2 0 Glycyl-tRNA synthetase alpha subunit DUF835 PF05763.12 gi|313124849|ref|YP_004035113.1| - 0.0023 17.7 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Abhydrolase_1 PF00561.20 gi|313124850|ref|YP_004035114.1| - 5.6e-16 59.0 0.2 1.3e-08 34.8 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313124850|ref|YP_004035114.1| - 1.3e-14 55.4 9.7 1.5e-14 55.1 9.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313124850|ref|YP_004035114.1| - 2.2e-12 46.8 0.2 5.7e-12 45.4 0.2 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|313124850|ref|YP_004035114.1| - 1e-06 28.8 0.0 1.7e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.13 gi|313124850|ref|YP_004035114.1| - 0.0054 16.4 0.0 0.0076 15.9 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.21 gi|313124850|ref|YP_004035114.1| - 0.0074 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 gi|313124850|ref|YP_004035114.1| - 0.041 13.7 0.0 4.3 7.1 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family GATase PF00117.28 gi|313124851|ref|YP_004035115.1| - 1.5e-23 83.5 0.0 2e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313124851|ref|YP_004035115.1| - 5.4e-12 45.9 0.4 3.8e-11 43.2 0.5 2.2 2 1 0 2 2 2 1 Peptidase C26 HTS PF04204.16 gi|313124851|ref|YP_004035115.1| - 2.7e-05 23.2 0.0 3.5e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.14 gi|313124851|ref|YP_004035115.1| - 0.048 13.3 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|313124851|ref|YP_004035115.1| - 0.077 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family DUF2785 PF10978.8 gi|313124852|ref|YP_004035116.1| - 0.02 14.7 0.0 0.021 14.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) Fer4_7 PF12838.7 gi|313124853|ref|YP_004035117.1| - 1.6e-12 47.8 21.2 2.7e-07 31.1 7.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313124853|ref|YP_004035117.1| - 7.3e-12 44.6 12.5 3e-07 30.0 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|313124853|ref|YP_004035117.1| - 4.6e-09 36.0 13.8 3.6e-05 23.6 5.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|313124853|ref|YP_004035117.1| - 7.8e-08 32.4 5.1 2e-07 31.0 5.4 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|313124853|ref|YP_004035117.1| - 4.4e-07 29.9 10.8 3.6e-06 27.0 10.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313124853|ref|YP_004035117.1| - 9.1e-07 28.9 17.9 4.7e-05 23.4 7.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313124853|ref|YP_004035117.1| - 1.1e-05 26.2 5.1 0.00088 20.2 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|313124853|ref|YP_004035117.1| - 3.6e-05 23.6 9.5 0.02 15.0 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|313124853|ref|YP_004035117.1| - 0.00019 21.9 2.3 0.11 13.0 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|313124853|ref|YP_004035117.1| - 0.00039 20.8 6.6 0.16 12.5 2.5 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|313124853|ref|YP_004035117.1| - 0.00056 20.2 2.5 0.00056 20.2 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|313124853|ref|YP_004035117.1| - 0.0006 20.6 11.1 0.0058 17.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|313124853|ref|YP_004035117.1| - 0.0008 19.9 13.9 0.027 15.0 13.9 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|313124853|ref|YP_004035117.1| - 0.014 15.5 4.0 0.014 15.5 4.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|313124853|ref|YP_004035117.1| - 0.08 13.1 0.7 0.099 12.8 0.7 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|313124853|ref|YP_004035117.1| - 1.8 9.4 15.1 30 5.5 15.1 2.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Ferritin PF00210.24 gi|313124854|ref|YP_004035118.1| - 1e-23 83.8 0.8 1.2e-23 83.6 0.8 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|313124854|ref|YP_004035118.1| - 7.8e-07 29.6 0.1 9.4e-07 29.3 0.1 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin-like PF12902.7 gi|313124854|ref|YP_004035118.1| - 0.00084 19.3 0.0 0.00089 19.2 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like DUF892 PF05974.12 gi|313124854|ref|YP_004035118.1| - 0.0014 18.7 2.6 0.0048 16.9 2.6 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|313124854|ref|YP_004035118.1| - 0.0018 18.4 0.1 0.0025 18.0 0.1 1.3 1 1 0 1 1 1 1 Ferritin-like domain Mn_catalase PF05067.12 gi|313124854|ref|YP_004035118.1| - 0.0032 16.5 0.2 0.0093 15.0 0.1 1.6 1 1 1 2 2 2 1 Manganese containing catalase CCG PF02754.16 gi|313124855|ref|YP_004035119.1| - 1.4e-18 66.9 0.0 4.1e-13 49.4 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|313124855|ref|YP_004035119.1| - 4.8e-10 39.4 9.9 1.7e-08 34.5 9.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|313124855|ref|YP_004035119.1| - 2.1e-09 37.7 4.1 2.1e-09 37.7 4.1 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313124855|ref|YP_004035119.1| - 3.3e-09 36.2 14.0 0.0001 21.9 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|313124855|ref|YP_004035119.1| - 1.2e-08 34.9 5.2 1.2e-08 34.9 5.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|313124855|ref|YP_004035119.1| - 1.8e-07 30.8 13.5 7.6e-05 22.6 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|313124855|ref|YP_004035119.1| - 1.6e-05 25.4 15.2 2.1e-05 25.0 12.5 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|313124855|ref|YP_004035119.1| - 2.8e-05 24.2 10.3 0.0083 16.2 0.4 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|313124855|ref|YP_004035119.1| - 0.0001 22.8 9.2 0.0001 22.8 9.2 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|313124855|ref|YP_004035119.1| - 0.00062 19.9 1.2 0.89 9.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|313124855|ref|YP_004035119.1| - 0.0015 18.9 17.6 0.0041 17.5 0.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|313124855|ref|YP_004035119.1| - 0.0017 18.4 3.6 0.0017 18.4 3.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313124855|ref|YP_004035119.1| - 0.0053 17.7 14.6 0.096 13.6 13.4 2.7 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|313124855|ref|YP_004035119.1| - 0.0072 17.1 7.1 0.087 13.7 0.5 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|313124855|ref|YP_004035119.1| - 6.3 8.0 26.4 0.79 10.8 5.6 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain CbiQ PF02361.16 gi|313124856|ref|YP_004035120.1| - 5.1e-15 55.7 3.0 6.7e-15 55.3 3.0 1.1 1 0 0 1 1 1 1 Cobalt transport protein Sec61_beta PF03911.16 gi|313124856|ref|YP_004035120.1| - 0.26 11.4 2.2 5.3 7.2 2.8 2.5 2 0 0 2 2 2 0 Sec61beta family ABC_tran PF00005.27 gi|313124857|ref|YP_004035121.1| - 8.7e-30 104.0 0.0 1.4e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313124857|ref|YP_004035121.1| - 4.2e-11 43.2 0.0 2.2e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313124857|ref|YP_004035121.1| - 4.5e-06 26.2 0.0 3.2e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313124857|ref|YP_004035121.1| - 0.00024 20.8 0.0 0.00046 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|313124857|ref|YP_004035121.1| - 0.00038 20.9 0.1 0.00055 20.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|313124857|ref|YP_004035121.1| - 0.00061 20.0 0.1 0.0099 16.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313124857|ref|YP_004035121.1| - 0.0077 15.8 0.7 0.028 14.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|313124857|ref|YP_004035121.1| - 0.01 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|313124857|ref|YP_004035121.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|313124857|ref|YP_004035121.1| - 0.012 15.7 0.2 0.055 13.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|313124857|ref|YP_004035121.1| - 0.021 14.8 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|313124857|ref|YP_004035121.1| - 0.022 14.4 0.1 0.073 12.7 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|313124857|ref|YP_004035121.1| - 0.024 15.2 0.0 0.035 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|313124857|ref|YP_004035121.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|313124857|ref|YP_004035121.1| - 0.025 14.8 0.0 0.058 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313124857|ref|YP_004035121.1| - 0.035 14.1 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|313124857|ref|YP_004035121.1| - 0.038 13.7 0.2 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|313124857|ref|YP_004035121.1| - 0.04 13.2 0.0 1.3 8.3 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain FlbD PF06289.11 gi|313124857|ref|YP_004035121.1| - 0.046 13.3 0.2 0.079 12.6 0.2 1.4 1 0 0 1 1 1 0 Flagellar and Swarming motility proteins Zeta_toxin PF06414.12 gi|313124857|ref|YP_004035121.1| - 0.047 13.0 0.1 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.6 gi|313124857|ref|YP_004035121.1| - 0.047 14.2 0.1 0.43 11.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|313124857|ref|YP_004035121.1| - 0.052 12.9 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|313124857|ref|YP_004035121.1| - 0.053 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|313124857|ref|YP_004035121.1| - 0.077 11.6 0.0 0.14 10.8 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|313124857|ref|YP_004035121.1| - 0.093 13.1 0.2 0.38 11.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|313124857|ref|YP_004035121.1| - 0.096 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|313124857|ref|YP_004035121.1| - 0.12 12.3 0.0 0.33 10.8 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DUF3584 PF12128.8 gi|313124857|ref|YP_004035121.1| - 0.19 9.2 0.0 0.26 8.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BioY PF02632.14 gi|313124858|ref|YP_004035122.1| - 1.3e-33 115.9 20.7 2e-33 115.3 20.7 1.2 1 0 0 1 1 1 1 BioY family ATP-synt_A PF00119.20 gi|313124858|ref|YP_004035122.1| - 1.6 8.7 8.7 2.9 7.8 8.8 1.6 1 1 0 1 1 1 0 ATP synthase A chain CbiM PF01891.16 gi|313124858|ref|YP_004035122.1| - 2.7 7.8 23.5 7 6.4 23.5 1.6 1 1 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region MCM PF00493.23 gi|313124860|ref|YP_004035124.1| - 1.3e-79 266.4 0.1 7.1e-34 116.9 0.0 3.3 3 0 0 3 3 3 3 MCM P-loop domain LAGLIDADG_3 PF14528.6 gi|313124860|ref|YP_004035124.1| - 1.3e-55 185.6 2.1 8.4e-17 61.3 0.1 4.9 5 0 0 5 5 4 4 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|313124860|ref|YP_004035124.1| - 2.1e-47 160.5 0.0 8e-23 80.9 0.0 3.6 3 0 0 3 3 3 3 Intein splicing domain MCM_OB PF17207.3 gi|313124860|ref|YP_004035124.1| - 6.1e-35 119.8 0.6 1.1e-34 119.0 0.6 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|313124860|ref|YP_004035124.1| - 4.9e-28 97.4 1.3 6.4e-27 93.8 0.2 2.7 2 0 0 2 2 2 1 MCM AAA-lid domain HTH_3 PF01381.22 gi|313124860|ref|YP_004035124.1| - 7.3e-10 38.8 0.0 0.00021 21.3 0.0 3.7 4 0 0 4 4 3 2 Helix-turn-helix Hom_end PF05204.14 gi|313124860|ref|YP_004035124.1| - 2.4e-09 37.4 1.1 0.03 14.5 0.0 3.9 4 0 0 4 4 3 3 Homing endonuclease HTH_31 PF13560.6 gi|313124860|ref|YP_004035124.1| - 3.9e-07 30.3 4.5 0.0066 16.8 0.1 4.9 5 0 0 5 5 4 2 Helix-turn-helix domain MCM_N PF14551.6 gi|313124860|ref|YP_004035124.1| - 4.4e-07 30.4 3.1 1.1e-06 29.2 1.4 2.6 2 0 0 2 2 1 1 MCM N-terminal domain Hint PF01079.20 gi|313124860|ref|YP_004035124.1| - 4.8e-05 23.0 0.0 0.0046 16.5 0.0 3.6 3 1 0 3 3 3 1 Hint module HTH_Tnp_ISL3 PF13542.6 gi|313124860|ref|YP_004035124.1| - 0.00011 21.6 0.1 0.0003 20.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_4 PF13613.6 gi|313124860|ref|YP_004035124.1| - 0.0003 20.4 0.0 0.00062 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Mg_chelatase PF01078.21 gi|313124860|ref|YP_004035124.1| - 0.0099 15.3 0.1 4.9 6.5 0.0 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI HTH_23 PF13384.6 gi|313124860|ref|YP_004035124.1| - 0.014 15.2 0.0 0.11 12.3 0.0 2.6 2 0 0 2 2 1 0 Homeodomain-like domain HTH_26 PF13443.6 gi|313124860|ref|YP_004035124.1| - 0.021 15.2 0.0 1.5 9.3 0.0 2.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.6 gi|313124860|ref|YP_004035124.1| - 0.022 14.5 0.0 0.079 12.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|313124860|ref|YP_004035124.1| - 0.031 14.4 0.0 0.085 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Hydrolase_6 PF13344.6 gi|313124860|ref|YP_004035124.1| - 0.036 14.2 0.1 0.55 10.4 0.0 2.8 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase MAD PF05557.13 gi|313124860|ref|YP_004035124.1| - 0.063 11.6 0.4 0.1 10.9 0.4 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein MarR_2 PF12802.7 gi|313124860|ref|YP_004035124.1| - 0.064 13.2 0.0 2 8.4 0.0 3.2 3 0 0 3 3 3 0 MarR family CENP-B_N PF04218.13 gi|313124860|ref|YP_004035124.1| - 0.11 12.2 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain YdaS_antitoxin PF15943.5 gi|313124860|ref|YP_004035124.1| - 0.12 12.3 0.2 1.7 8.6 0.0 3.0 4 0 0 4 4 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF4072 PF13284.6 gi|313124860|ref|YP_004035124.1| - 0.13 12.7 1.4 0.55 10.7 0.5 2.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4072) HTH_36 PF13730.6 gi|313124860|ref|YP_004035124.1| - 0.14 12.1 0.0 0.52 10.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.21 gi|313124860|ref|YP_004035124.1| - 0.15 11.9 0.1 0.55 10.1 0.1 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Snf7 PF03357.21 gi|313124860|ref|YP_004035124.1| - 1.5 8.4 4.0 1.4 8.4 1.8 2.1 2 0 0 2 2 2 0 Snf7 Tir_receptor_N PF07490.11 gi|313124861|ref|YP_004035125.1| - 0.052 13.4 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus GARS_C PF02843.16 gi|313124861|ref|YP_004035125.1| - 0.055 13.8 0.1 0.088 13.1 0.1 1.5 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain DUF5446 PF17522.2 gi|313124863|ref|YP_004035127.1| - 0.086 13.0 0.9 7.1 6.9 0.4 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5446) Spc7 PF08317.11 gi|313124863|ref|YP_004035127.1| - 0.34 9.8 1.5 0.53 9.1 1.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein ParA PF10609.9 gi|313124865|ref|YP_004035129.1| - 1e-10 41.5 0.7 4.5e-05 23.0 0.3 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|313124865|ref|YP_004035129.1| - 7.8e-08 32.4 0.1 0.011 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|313124865|ref|YP_004035129.1| - 1.3e-07 31.7 0.0 1.8e-07 31.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|313124865|ref|YP_004035129.1| - 0.00076 19.0 0.4 1.4 8.3 0.4 2.9 3 0 0 3 3 3 2 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|313124865|ref|YP_004035129.1| - 0.0031 17.3 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|313124865|ref|YP_004035129.1| - 0.03 13.8 0.2 6.1 6.2 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|313124865|ref|YP_004035129.1| - 0.052 12.8 0.7 0.25 10.6 0.7 1.9 1 1 0 1 1 1 0 ATPase MipZ ArsA_ATPase PF02374.15 gi|313124865|ref|YP_004035129.1| - 0.056 12.6 0.2 0.079 12.1 0.2 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_33 PF13671.6 gi|313124865|ref|YP_004035129.1| - 0.1 12.8 0.0 0.16 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313124865|ref|YP_004035129.1| - 0.1 12.2 3.2 0.7 9.4 3.2 2.3 1 1 0 1 1 1 0 AAA domain TFIIB PF00382.19 gi|313124866|ref|YP_004035130.1| - 1.5e-34 117.9 1.5 1.1e-16 60.6 0.7 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313124866|ref|YP_004035130.1| - 2.9e-10 39.5 2.4 6e-10 38.5 2.3 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|313124866|ref|YP_004035130.1| - 0.00015 21.8 0.0 0.00026 21.0 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|313124866|ref|YP_004035130.1| - 0.0086 15.4 0.9 0.015 14.7 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|313124866|ref|YP_004035130.1| - 0.046 13.7 0.6 0.096 12.7 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|313124866|ref|YP_004035130.1| - 1.7 8.8 4.4 2.3 8.4 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|313124867|ref|YP_004035131.1| - 0.047 13.5 0.6 28 4.7 0.0 3.7 3 1 1 4 4 4 0 Homeodomain-like domain HTH_28 PF13518.6 gi|313124867|ref|YP_004035131.1| - 0.13 12.4 0.6 3.7 7.7 0.1 3.3 3 1 1 4 4 4 0 Helix-turn-helix domain AAA_31 PF13614.6 gi|313124868|ref|YP_004035132.1| - 1.8e-08 34.5 0.0 2.8e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|313124868|ref|YP_004035132.1| - 1.1e-06 28.3 0.1 2e-06 27.4 0.1 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|313124868|ref|YP_004035132.1| - 5.6e-06 26.0 0.5 0.018 14.5 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|313124868|ref|YP_004035132.1| - 0.00034 20.0 1.6 0.38 10.0 0.1 2.4 2 1 1 3 3 3 2 ATPase MipZ CbiA PF01656.23 gi|313124868|ref|YP_004035132.1| - 0.0096 16.0 0.1 0.018 15.1 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Glyco_transf_4 PF13439.6 gi|313124868|ref|YP_004035132.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 VirC1 PF07015.11 gi|313124868|ref|YP_004035132.1| - 0.16 11.3 2.3 0.45 9.8 1.7 1.9 2 0 0 2 2 2 0 VirC1 protein Response_reg PF00072.24 gi|313124869|ref|YP_004035133.1| - 5.2e-21 74.9 0.0 2.8e-20 72.6 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|313124869|ref|YP_004035133.1| - 7.1e-21 74.3 0.1 5.6e-09 36.0 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313124869|ref|YP_004035133.1| - 2.9e-17 62.8 0.1 2.6e-08 34.1 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|313124869|ref|YP_004035133.1| - 8.3e-17 61.7 0.1 1.8e-16 60.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313124869|ref|YP_004035133.1| - 1.9e-15 57.1 2.7 9.2e-08 32.3 0.1 3.3 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|313124869|ref|YP_004035133.1| - 7.1e-15 54.8 2.1 3.2e-13 49.5 0.2 3.3 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|313124869|ref|YP_004035133.1| - 3e-14 52.6 0.6 3.2e-07 30.2 0.1 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|313124869|ref|YP_004035133.1| - 1.3e-05 25.4 0.0 0.0068 16.7 0.0 3.0 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.6 gi|313124869|ref|YP_004035133.1| - 0.001 19.4 0.0 0.0033 17.8 0.0 1.9 2 0 0 2 2 1 1 GAF domain PAS_10 PF13596.6 gi|313124869|ref|YP_004035133.1| - 0.024 15.2 0.1 4.9 7.8 0.0 2.8 2 1 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.6 gi|313124869|ref|YP_004035133.1| - 0.028 14.2 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|313124869|ref|YP_004035133.1| - 0.031 14.0 0.0 0.077 12.7 0.0 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Chitin_bind_4 PF00379.23 gi|313124869|ref|YP_004035133.1| - 0.044 14.3 0.0 0.29 11.7 0.0 2.5 2 0 0 2 2 2 0 Insect cuticle protein Methyltransf_24 PF13578.6 gi|313124869|ref|YP_004035133.1| - 0.064 14.3 0.2 0.92 10.6 0.1 2.9 2 0 0 2 2 2 0 Methyltransferase domain PAS_7 PF12860.7 gi|313124869|ref|YP_004035133.1| - 8.3 6.6 8.4 4.3 7.5 0.0 4.0 5 1 0 5 5 5 0 PAS fold TrbC PF04956.13 gi|313124871|ref|YP_004035135.1| - 2.5 8.4 10.2 8.1 6.7 4.0 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF2070 PF09843.9 gi|313124871|ref|YP_004035135.1| - 3.5 5.8 9.9 4.3 5.5 9.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HIT PF01230.23 gi|313124872|ref|YP_004035136.1| - 2.6e-26 92.2 0.0 3.2e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|313124872|ref|YP_004035136.1| - 1e-11 45.3 0.0 1.4e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.17 gi|313124872|ref|YP_004035136.1| - 0.056 13.2 0.0 0.076 12.7 0.0 1.1 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain CwfJ_C_1 PF04677.15 gi|313124872|ref|YP_004035136.1| - 0.2 11.5 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 tRNA-synt_1b PF00579.25 gi|313124873|ref|YP_004035137.1| - 3.6e-48 164.4 0.0 4.7e-48 164.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|313124873|ref|YP_004035137.1| - 0.034 13.1 0.0 1.7 7.5 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) Chordopox_E11 PF06138.12 gi|313124873|ref|YP_004035137.1| - 0.053 13.9 0.1 0.11 12.9 0.1 1.4 1 1 0 1 1 1 0 Chordopoxvirus E11 protein DUF726 PF05277.12 gi|313124874|ref|YP_004035138.1| - 0.69 8.8 6.1 0.7 8.8 6.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF726) RTX PF02382.15 gi|313124874|ref|YP_004035138.1| - 4.5 6.9 6.1 5.1 6.7 6.1 1.0 1 0 0 1 1 1 0 N-terminal domain in RTX protein eIF-1a PF01176.19 gi|313124875|ref|YP_004035139.1| - 4.1e-24 84.2 0.5 5e-24 83.9 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Sclerostin PF05463.11 gi|313124875|ref|YP_004035139.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.1 1 0 0 1 1 1 0 Sclerostin (SOST) zinc_ribbon_5 PF13719.6 gi|313124875|ref|YP_004035139.1| - 0.027 14.2 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain ChapFlgA_N PF17656.1 gi|313124875|ref|YP_004035139.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 FlgA N-terminal domain RIO1 PF01163.22 gi|313124876|ref|YP_004035140.1| - 5.3e-61 205.5 0.7 1e-60 204.6 0.0 1.6 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|313124876|ref|YP_004035140.1| - 6.4e-07 29.5 2.1 7e-05 22.9 0.0 2.6 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|313124876|ref|YP_004035140.1| - 9.6e-07 28.4 0.1 2.1e-06 27.2 0.1 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|313124876|ref|YP_004035140.1| - 0.00032 20.1 0.0 0.00064 19.2 0.0 1.4 2 0 0 2 2 2 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|313124876|ref|YP_004035140.1| - 0.00038 19.3 0.0 0.00048 19.0 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase WaaY PF06176.11 gi|313124876|ref|YP_004035140.1| - 0.041 13.5 0.0 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) VQ PF05678.14 gi|313124876|ref|YP_004035140.1| - 0.091 12.3 0.1 0.2 11.2 0.1 1.6 1 0 0 1 1 1 0 VQ motif KH_1 PF00013.29 gi|313124877|ref|YP_004035141.1| - 4.3e-12 45.7 5.1 8.3e-07 28.8 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|313124877|ref|YP_004035141.1| - 0.0008 19.2 3.3 0.028 14.2 0.2 2.4 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|313124877|ref|YP_004035141.1| - 0.0056 16.5 1.3 1.3 9.0 0.2 2.7 2 1 0 2 2 2 2 KH domain Cpn60_TCP1 PF00118.24 gi|313124879|ref|YP_004035143.1| - 4.3e-180 599.5 12.8 4.9e-180 599.4 12.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PepSY PF03413.19 gi|313124879|ref|YP_004035143.1| - 0.06 13.9 0.3 10 6.8 0.0 3.0 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Phage_holin_6_1 PF09682.10 gi|313124879|ref|YP_004035143.1| - 0.13 12.7 0.8 0.61 10.5 0.8 2.2 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) YccF PF03733.13 gi|313124880|ref|YP_004035144.1| - 2e-09 38.0 23.3 9.6e-06 26.2 7.7 2.1 2 0 0 2 2 2 2 Inner membrane component domain COPI_assoc PF08507.10 gi|313124880|ref|YP_004035144.1| - 6.8 6.8 9.5 1.9 8.5 3.3 2.1 1 1 1 2 2 2 0 COPI associated protein AAA_17 PF13207.6 gi|313124881|ref|YP_004035145.1| - 4.6e-21 75.7 0.1 7.1e-21 75.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|313124881|ref|YP_004035145.1| - 8.3e-13 49.0 0.1 1.3e-12 48.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313124881|ref|YP_004035145.1| - 6.1e-06 26.5 0.0 1.1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|313124881|ref|YP_004035145.1| - 0.00038 20.6 0.1 0.00075 19.6 0.1 1.5 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.20 gi|313124881|ref|YP_004035145.1| - 0.032 13.9 0.7 7.4 6.2 0.1 2.3 1 1 0 2 2 2 0 Dephospho-CoA kinase PEP-utilizers PF00391.23 gi|313124881|ref|YP_004035145.1| - 0.055 13.2 0.3 0.13 12.0 0.3 1.7 1 1 0 1 1 1 0 PEP-utilising enzyme, mobile domain RNA_binding PF01877.17 gi|313124882|ref|YP_004035146.1| - 2.5e-09 37.4 2.7 4.9e-08 33.3 2.7 2.1 1 1 0 1 1 1 1 RNA binding MgtE PF01769.16 gi|313124884|ref|YP_004035148.1| - 3.1e-21 76.0 10.8 3.1e-21 76.0 10.8 1.4 2 0 0 2 2 2 1 Divalent cation transporter DUF697 PF05128.12 gi|313124884|ref|YP_004035148.1| - 1.8 8.2 8.2 2.9 7.6 1.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF697) MgtE PF01769.16 gi|313124885|ref|YP_004035149.1| - 1.3e-20 74.0 8.9 1.6e-20 73.7 7.0 1.8 2 0 0 2 2 2 1 Divalent cation transporter DUF4781 PF16013.5 gi|313124885|ref|YP_004035149.1| - 5.7 5.7 5.3 8.7 5.0 5.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) CitMHS PF03600.16 gi|313124885|ref|YP_004035149.1| - 5.9 6.0 17.0 8.9 5.4 17.0 1.4 1 1 0 1 1 1 0 Citrate transporter SRP54 PF00448.22 gi|313124886|ref|YP_004035150.1| - 9.6e-63 211.4 0.4 1.8e-62 210.5 0.1 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|313124886|ref|YP_004035150.1| - 6.8e-29 100.4 3.4 6.8e-29 100.4 3.4 2.6 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|313124886|ref|YP_004035150.1| - 1.8e-19 69.7 3.1 3.1e-19 69.0 0.3 2.7 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|313124886|ref|YP_004035150.1| - 0.00012 21.5 0.0 0.00032 20.1 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|313124886|ref|YP_004035150.1| - 0.00013 22.1 0.0 0.0003 20.8 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|313124886|ref|YP_004035150.1| - 0.0029 17.5 0.0 0.0068 16.3 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase SMC_N PF02463.19 gi|313124886|ref|YP_004035150.1| - 0.0045 16.4 0.0 0.0074 15.7 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313124886|ref|YP_004035150.1| - 0.0053 17.0 0.1 0.039 14.2 0.0 2.3 3 0 0 3 3 3 1 AAA domain DCX PF03607.17 gi|313124886|ref|YP_004035150.1| - 0.016 15.3 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 Doublecortin cobW PF02492.19 gi|313124886|ref|YP_004035150.1| - 0.016 14.8 0.5 0.18 11.4 0.5 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|313124886|ref|YP_004035150.1| - 0.019 15.1 0.0 0.047 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|313124886|ref|YP_004035150.1| - 0.023 15.1 0.0 0.058 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain ArsA_ATPase PF02374.15 gi|313124886|ref|YP_004035150.1| - 0.031 13.4 0.0 0.031 13.4 0.0 2.6 3 0 0 3 3 3 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|313124886|ref|YP_004035150.1| - 0.031 14.0 0.1 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|313124886|ref|YP_004035150.1| - 0.049 14.1 0.2 0.12 12.8 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313124886|ref|YP_004035150.1| - 0.051 14.1 0.1 0.26 11.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain MobB PF03205.14 gi|313124886|ref|YP_004035150.1| - 0.076 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.9 gi|313124886|ref|YP_004035150.1| - 0.083 11.8 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.10 gi|313124886|ref|YP_004035150.1| - 0.085 12.3 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 E3_UbLigase_EDD PF11547.8 gi|313124886|ref|YP_004035150.1| - 0.089 12.5 0.2 0.25 11.1 0.2 1.7 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD PRK PF00485.18 gi|313124886|ref|YP_004035150.1| - 0.095 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_31 PF13614.6 gi|313124886|ref|YP_004035150.1| - 0.097 12.6 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|313124886|ref|YP_004035150.1| - 0.13 11.9 0.4 0.71 9.5 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase DUF1611 PF07755.11 gi|313124886|ref|YP_004035150.1| - 0.14 11.5 0.1 0.39 10.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain ResIII PF04851.15 gi|313124886|ref|YP_004035150.1| - 0.16 11.9 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|313124886|ref|YP_004035150.1| - 3.6 7.1 5.6 0.83 9.2 1.0 2.3 3 1 0 3 3 3 0 AAA domain Spectrin PF00435.21 gi|313124886|ref|YP_004035150.1| - 4.2 7.9 7.1 0.34 11.4 0.2 2.5 3 0 0 3 3 2 0 Spectrin repeat 2-Hacid_dh_C PF02826.19 gi|313124887|ref|YP_004035151.1| - 3.7e-50 169.8 0.0 5.1e-50 169.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|313124887|ref|YP_004035151.1| - 1.2e-16 60.5 0.0 1.4e-16 60.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|313124887|ref|YP_004035151.1| - 0.054 13.7 0.1 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.21 gi|313124887|ref|YP_004035151.1| - 0.16 11.3 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 ThiF family LysE PF01810.18 gi|313124888|ref|YP_004035152.1| - 1.3e-30 106.3 9.5 1.6e-30 106.0 9.5 1.1 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 gi|313124888|ref|YP_004035152.1| - 0.057 13.1 0.1 0.057 13.1 0.1 1.7 2 0 0 2 2 2 0 Integral membrane protein TerC family SRP54 PF00448.22 gi|313124889|ref|YP_004035153.1| - 3.6e-70 235.6 0.4 5.9e-70 234.9 0.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|313124889|ref|YP_004035153.1| - 1.4e-15 57.2 0.5 1.4e-15 57.2 0.5 1.9 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|313124889|ref|YP_004035153.1| - 4.3e-05 22.9 0.7 0.00025 20.4 0.2 2.1 1 1 1 2 2 2 1 Zeta toxin CbiA PF01656.23 gi|313124889|ref|YP_004035153.1| - 5.2e-05 23.3 0.0 0.00014 22.0 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|313124889|ref|YP_004035153.1| - 0.00015 21.5 0.1 0.015 15.0 0.0 2.7 2 0 0 2 2 2 1 Thymidylate kinase APS_kinase PF01583.20 gi|313124889|ref|YP_004035153.1| - 0.00015 21.7 0.0 0.00027 20.9 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|313124889|ref|YP_004035153.1| - 0.00053 20.4 0.0 0.00053 20.4 0.0 2.8 2 1 0 2 2 1 1 AAA ATPase domain cobW PF02492.19 gi|313124889|ref|YP_004035153.1| - 0.00066 19.3 0.2 0.0016 18.1 0.2 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|313124889|ref|YP_004035153.1| - 0.0086 16.2 0.1 0.052 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|313124889|ref|YP_004035153.1| - 0.012 15.6 0.1 0.027 14.4 0.1 1.6 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.6 gi|313124889|ref|YP_004035153.1| - 0.012 16.1 0.1 0.012 16.1 0.1 2.8 3 0 0 3 3 3 0 AAA domain KTI12 PF08433.10 gi|313124889|ref|YP_004035153.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|313124889|ref|YP_004035153.1| - 0.027 14.8 0.1 0.14 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain KdpD PF02702.17 gi|313124889|ref|YP_004035153.1| - 0.03 13.8 0.2 0.17 11.4 0.1 2.1 1 1 1 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_31 PF13614.6 gi|313124889|ref|YP_004035153.1| - 0.042 13.7 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|313124889|ref|YP_004035153.1| - 0.068 13.2 0.0 0.15 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|313124889|ref|YP_004035153.1| - 0.092 12.5 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|313124889|ref|YP_004035153.1| - 0.14 12.5 2.1 0.22 11.9 0.1 2.1 1 1 1 2 2 2 0 AAA domain SPX PF03105.19 gi|313124889|ref|YP_004035153.1| - 0.21 11.5 9.8 0.3 10.9 9.8 1.2 1 0 0 1 1 1 0 SPX domain AAA PF00004.29 gi|313124889|ref|YP_004035153.1| - 0.29 11.6 2.9 0.53 10.7 0.1 2.8 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|313124889|ref|YP_004035153.1| - 0.37 11.3 1.9 0.9 10.0 0.1 2.5 1 1 2 3 3 3 0 ABC transporter Macoilin PF09726.9 gi|313124889|ref|YP_004035153.1| - 0.48 8.9 4.4 0.67 8.4 4.4 1.2 1 0 0 1 1 1 0 Macoilin family Prefoldin PF02996.17 gi|313124890|ref|YP_004035154.1| - 3.7e-22 78.5 11.1 3.7e-22 78.5 11.1 2.1 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|313124890|ref|YP_004035154.1| - 2.1e-06 27.6 19.4 6.5e-05 22.8 4.8 3.6 1 1 2 3 3 2 2 Prefoldin subunit Spc7 PF08317.11 gi|313124890|ref|YP_004035154.1| - 5.7e-06 25.4 20.8 0.00091 18.2 4.0 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein GAS PF13851.6 gi|313124890|ref|YP_004035154.1| - 3.7e-05 23.2 14.8 0.0085 15.5 0.6 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding SKA2 PF16740.5 gi|313124890|ref|YP_004035154.1| - 0.00027 20.7 16.6 0.044 13.6 0.6 2.3 2 0 0 2 2 2 2 Spindle and kinetochore-associated protein 2 APG6_N PF17675.1 gi|313124890|ref|YP_004035154.1| - 0.00038 21.0 27.9 0.034 14.7 7.6 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region Syntaxin PF00804.25 gi|313124890|ref|YP_004035154.1| - 0.0008 19.1 13.1 0.035 13.8 0.8 2.2 2 0 0 2 2 2 2 Syntaxin Tropomyosin_1 PF12718.7 gi|313124890|ref|YP_004035154.1| - 0.0019 18.3 23.4 0.024 14.8 4.5 2.2 2 0 0 2 2 2 2 Tropomyosin like DHR10 PF18595.1 gi|313124890|ref|YP_004035154.1| - 0.0023 18.0 23.1 0.068 13.2 11.6 2.2 2 0 0 2 2 2 2 Designed helical repeat protein 10 domain DUF3287 PF11690.8 gi|313124890|ref|YP_004035154.1| - 0.0027 17.4 2.8 0.4 10.4 1.7 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3287) DUF5082 PF16888.5 gi|313124890|ref|YP_004035154.1| - 0.0029 17.9 20.9 0.0086 16.4 4.9 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF5082) Dynamitin PF04912.14 gi|313124890|ref|YP_004035154.1| - 0.0033 16.8 15.9 0.017 14.5 5.2 2.0 2 0 0 2 2 2 2 Dynamitin Laminin_II PF06009.12 gi|313124890|ref|YP_004035154.1| - 0.0039 17.2 9.1 0.096 12.7 0.1 2.2 2 0 0 2 2 2 1 Laminin Domain II YabA PF06156.13 gi|313124890|ref|YP_004035154.1| - 0.004 17.8 13.9 0.12 13.0 0.1 2.1 2 0 0 2 2 2 1 Initiation control protein YabA DivIC PF04977.15 gi|313124890|ref|YP_004035154.1| - 0.0044 16.8 6.0 0.0044 16.8 6.0 3.2 2 1 1 3 3 2 2 Septum formation initiator DUF812 PF05667.11 gi|313124890|ref|YP_004035154.1| - 0.0048 15.8 22.2 0.089 11.7 3.5 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) ZapB PF06005.12 gi|313124890|ref|YP_004035154.1| - 0.0056 17.1 31.1 0.24 11.8 16.1 2.3 2 0 0 2 2 2 2 Cell division protein ZapB DUF3450 PF11932.8 gi|313124890|ref|YP_004035154.1| - 0.0068 15.7 26.3 0.083 12.2 5.4 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) HCMV_UL139 PF12507.8 gi|313124890|ref|YP_004035154.1| - 0.0069 16.8 6.5 1.1 9.7 3.8 2.1 2 0 0 2 2 2 1 Human Cytomegalovirus UL139 protein AAA_13 PF13166.6 gi|313124890|ref|YP_004035154.1| - 0.0071 15.1 12.7 0.069 11.8 1.9 2.0 2 0 0 2 2 2 2 AAA domain NPV_P10 PF05531.12 gi|313124890|ref|YP_004035154.1| - 0.0077 16.7 17.2 0.042 14.3 2.7 2.5 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.11 gi|313124890|ref|YP_004035154.1| - 0.0078 16.3 21.8 0.036 14.2 10.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus Fib_alpha PF08702.10 gi|313124890|ref|YP_004035154.1| - 0.0085 16.3 15.2 0.17 12.1 0.8 2.3 1 1 0 2 2 2 1 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|313124890|ref|YP_004035154.1| - 0.012 15.9 20.4 0.028 14.7 4.5 2.7 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|313124890|ref|YP_004035154.1| - 0.013 15.5 9.3 0.37 10.8 0.5 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TSC22 PF01166.18 gi|313124890|ref|YP_004035154.1| - 0.015 15.6 4.9 0.015 15.6 4.9 3.1 2 1 1 3 3 2 0 TSC-22/dip/bun family Ax_dynein_light PF10211.9 gi|313124890|ref|YP_004035154.1| - 0.017 15.0 19.9 0.4 10.6 2.0 2.2 2 0 0 2 2 2 0 Axonemal dynein light chain DUF4618 PF15397.6 gi|313124890|ref|YP_004035154.1| - 0.018 14.5 17.1 0.15 11.5 1.4 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) DUF4337 PF14235.6 gi|313124890|ref|YP_004035154.1| - 0.018 15.1 13.4 0.25 11.5 7.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) CENP-H PF05837.12 gi|313124890|ref|YP_004035154.1| - 0.019 15.4 16.0 0.2 12.1 0.4 2.2 2 0 0 2 2 2 0 Centromere protein H (CENP-H) COG2 PF06148.11 gi|313124890|ref|YP_004035154.1| - 0.021 14.9 11.6 0.061 13.4 0.2 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 XhlA PF10779.9 gi|313124890|ref|YP_004035154.1| - 0.021 15.0 12.3 0.4 10.9 2.2 2.4 2 0 0 2 2 2 0 Haemolysin XhlA OmpH PF03938.14 gi|313124890|ref|YP_004035154.1| - 0.025 14.9 29.8 0.076 13.3 1.1 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF4988 PF16378.5 gi|313124890|ref|YP_004035154.1| - 0.026 14.2 7.3 0.2 11.3 0.5 2.4 1 1 0 2 2 2 0 Domain of unknown function MAD PF05557.13 gi|313124890|ref|YP_004035154.1| - 0.029 12.7 18.2 0.14 10.5 8.7 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein DUF4407 PF14362.6 gi|313124890|ref|YP_004035154.1| - 0.03 13.7 14.0 0.047 13.0 14.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HAUS-augmin3 PF14932.6 gi|313124890|ref|YP_004035154.1| - 0.031 13.9 17.0 0.42 10.1 2.3 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 CENP-F_leu_zip PF10473.9 gi|313124890|ref|YP_004035154.1| - 0.034 14.2 23.2 0.038 14.0 3.3 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CC2-LZ PF16516.5 gi|313124890|ref|YP_004035154.1| - 0.035 14.5 2.4 0.035 14.5 2.4 2.6 2 1 0 2 2 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF1515 PF07439.11 gi|313124890|ref|YP_004035154.1| - 0.036 14.1 10.2 0.29 11.2 0.9 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) Spc24 PF08286.11 gi|313124890|ref|YP_004035154.1| - 0.048 13.9 23.7 0.25 11.6 5.1 2.4 1 1 0 2 2 2 0 Spc24 subunit of Ndc80 TMF_TATA_bd PF12325.8 gi|313124890|ref|YP_004035154.1| - 0.05 13.8 2.5 0.05 13.8 2.5 2.8 2 1 0 3 3 2 0 TATA element modulatory factor 1 TATA binding Jnk-SapK_ap_N PF09744.9 gi|313124890|ref|YP_004035154.1| - 0.052 13.8 20.5 0.091 13.0 8.5 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF4795 PF16043.5 gi|313124890|ref|YP_004035154.1| - 0.059 13.0 14.7 0.24 11.0 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) SOGA PF11365.8 gi|313124890|ref|YP_004035154.1| - 0.061 14.5 0.9 0.061 14.5 0.9 2.6 2 1 1 3 3 2 0 Protein SOGA Phage_GPO PF05929.11 gi|313124890|ref|YP_004035154.1| - 0.077 12.6 10.7 1.8 8.1 6.0 2.0 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase SKA1 PF07160.12 gi|313124890|ref|YP_004035154.1| - 0.094 12.5 15.0 0.94 9.3 1.6 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 ORF6C PF10552.9 gi|313124890|ref|YP_004035154.1| - 0.1 12.7 13.5 0.92 9.6 1.2 2.3 2 0 0 2 2 2 0 ORF6C domain Occludin_ELL PF07303.13 gi|313124890|ref|YP_004035154.1| - 0.1 13.3 14.1 0.49 11.2 1.0 2.3 2 1 0 2 2 2 0 Occludin homology domain Golgin_A5 PF09787.9 gi|313124890|ref|YP_004035154.1| - 0.11 11.9 24.3 0.23 10.9 13.0 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 DUF1664 PF07889.12 gi|313124890|ref|YP_004035154.1| - 0.11 12.5 19.3 0.28 11.2 2.8 2.7 1 1 2 3 3 2 0 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|313124890|ref|YP_004035154.1| - 0.12 12.6 20.4 0.095 12.9 1.8 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Vps51 PF08700.11 gi|313124890|ref|YP_004035154.1| - 0.12 12.5 11.3 1.3 9.2 0.7 2.9 2 2 0 2 2 2 0 Vps51/Vps67 FapA PF03961.13 gi|313124890|ref|YP_004035154.1| - 0.13 10.9 14.7 0.53 8.8 2.0 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF948 PF06103.11 gi|313124890|ref|YP_004035154.1| - 0.15 12.3 9.5 0.62 10.4 0.6 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) AAA_23 PF13476.6 gi|313124890|ref|YP_004035154.1| - 0.17 12.4 17.7 0.88 10.0 5.4 2.1 2 0 0 2 2 2 0 AAA domain TMPIT PF07851.13 gi|313124890|ref|YP_004035154.1| - 0.17 11.1 12.7 2 7.6 0.1 2.0 2 0 0 2 2 2 0 TMPIT-like protein Paralemmin PF03285.15 gi|313124890|ref|YP_004035154.1| - 0.18 11.4 16.5 0.18 11.3 0.8 2.1 2 0 0 2 2 2 0 Paralemmin Spectrin PF00435.21 gi|313124890|ref|YP_004035154.1| - 0.19 12.2 19.4 0.53 10.8 2.8 2.3 2 0 0 2 2 2 0 Spectrin repeat Cluap1 PF10234.9 gi|313124890|ref|YP_004035154.1| - 0.19 11.1 15.9 0.42 10.0 6.3 2.0 2 0 0 2 2 2 0 Clusterin-associated protein-1 Hemagglutinin PF00509.18 gi|313124890|ref|YP_004035154.1| - 0.21 9.9 4.5 0.75 8.1 0.1 2.0 2 0 0 2 2 2 0 Haemagglutinin YlqD PF11068.8 gi|313124890|ref|YP_004035154.1| - 0.24 11.8 30.4 0.65 10.4 14.2 2.7 2 1 0 2 2 2 0 YlqD protein IFT57 PF10498.9 gi|313124890|ref|YP_004035154.1| - 0.29 10.0 19.6 0.048 12.6 2.6 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 V_ATPase_I PF01496.19 gi|313124890|ref|YP_004035154.1| - 0.38 8.6 10.9 0.74 7.7 0.5 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Tektin PF03148.14 gi|313124890|ref|YP_004035154.1| - 0.38 9.5 18.9 0.76 8.5 3.8 2.3 2 0 0 2 2 2 0 Tektin family Sec34 PF04136.15 gi|313124890|ref|YP_004035154.1| - 0.41 10.5 16.7 0.14 12.1 2.3 2.1 2 0 0 2 2 2 0 Sec34-like family DUF2730 PF10805.8 gi|313124890|ref|YP_004035154.1| - 0.5 10.5 9.9 1.3 9.1 0.9 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF2730) FlaC_arch PF05377.11 gi|313124890|ref|YP_004035154.1| - 0.52 10.7 21.0 0.12 12.8 3.6 3.3 3 1 1 4 4 3 0 Flagella accessory protein C (FlaC) Tup_N PF08581.10 gi|313124890|ref|YP_004035154.1| - 0.58 10.5 23.0 2.6 8.4 11.3 2.6 2 0 0 2 2 2 0 Tup N-terminal ADIP PF11559.8 gi|313124890|ref|YP_004035154.1| - 0.59 10.2 17.7 0.68 10.0 6.3 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding bZIP_1 PF00170.21 gi|313124890|ref|YP_004035154.1| - 0.59 10.3 12.2 3.4 7.8 2.7 2.6 2 1 0 2 2 2 0 bZIP transcription factor Mod_r PF07200.13 gi|313124890|ref|YP_004035154.1| - 0.6 10.2 17.9 1.6 8.8 2.6 2.2 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.9 gi|313124890|ref|YP_004035154.1| - 0.66 9.0 19.4 8.1 5.4 19.4 1.9 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FliD_C PF07195.12 gi|313124890|ref|YP_004035154.1| - 0.69 9.3 12.4 1.1 8.6 6.9 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus MtrG PF04210.13 gi|313124890|ref|YP_004035154.1| - 0.73 9.7 3.1 10 6.0 0.1 2.7 2 2 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF724 PF05266.14 gi|313124890|ref|YP_004035154.1| - 0.84 9.4 20.1 0.77 9.6 1.9 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF724) AAA_lid_9 PF17871.1 gi|313124890|ref|YP_004035154.1| - 0.98 9.4 15.4 2.1 8.3 7.0 2.4 2 0 0 2 2 2 0 AAA lid domain PHM7_cyt PF14703.6 gi|313124890|ref|YP_004035154.1| - 1.2 9.4 9.1 2.8 8.1 3.9 2.2 2 0 0 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter Muted PF14942.6 gi|313124890|ref|YP_004035154.1| - 1.3 9.4 19.3 0.85 10.0 1.1 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DASH_Spc19 PF08287.11 gi|313124890|ref|YP_004035154.1| - 1.3 8.9 18.2 2.3 8.1 8.5 2.2 1 1 1 2 2 2 0 Spc19 HemX PF04375.14 gi|313124890|ref|YP_004035154.1| - 1.4 8.2 26.8 2.1 7.5 6.4 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Borealin PF10512.9 gi|313124890|ref|YP_004035154.1| - 1.4 8.9 6.1 31 4.6 0.0 3.0 3 0 0 3 3 3 0 Cell division cycle-associated protein 8 DUF4763 PF15960.5 gi|313124890|ref|YP_004035154.1| - 1.5 8.0 20.7 0.29 10.4 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) TPR_MLP1_2 PF07926.12 gi|313124890|ref|YP_004035154.1| - 1.6 8.8 29.1 1.2 9.2 8.9 2.9 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein Cep57_MT_bd PF06657.13 gi|313124890|ref|YP_004035154.1| - 1.7 9.1 18.5 2.6 8.5 8.7 2.4 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Synaptobrevin PF00957.21 gi|313124890|ref|YP_004035154.1| - 1.8 8.4 12.6 0.2 11.5 4.7 2.4 2 0 0 2 2 2 0 Synaptobrevin DUF4515 PF14988.6 gi|313124890|ref|YP_004035154.1| - 1.9 8.3 24.9 2 8.2 4.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4515) EzrA PF06160.12 gi|313124890|ref|YP_004035154.1| - 2.1 6.4 20.7 0.39 8.8 3.3 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA TMF_DNA_bd PF12329.8 gi|313124890|ref|YP_004035154.1| - 2.1 8.4 21.9 1.5 8.9 4.0 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF2570 PF10828.8 gi|313124890|ref|YP_004035154.1| - 2.2 8.1 23.1 0.92 9.4 12.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) Lzipper-MIP1 PF14389.6 gi|313124890|ref|YP_004035154.1| - 2.5 8.5 19.8 1.2 9.5 2.8 2.9 2 2 2 4 4 3 0 Leucine-zipper of ternary complex factor MIP1 Tho2 PF11262.8 gi|313124890|ref|YP_004035154.1| - 2.7 7.1 10.5 1.3 8.2 2.9 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DASH_Dam1 PF08653.10 gi|313124890|ref|YP_004035154.1| - 2.8 7.8 13.6 5.7 6.8 0.5 3.6 2 2 0 2 2 2 0 DASH complex subunit Dam1 CLP_protease PF00574.23 gi|313124890|ref|YP_004035154.1| - 3.1 7.7 10.6 6.9 6.5 5.2 2.2 2 0 0 2 2 2 0 Clp protease Med4 PF10018.9 gi|313124890|ref|YP_004035154.1| - 3.2 7.4 19.3 3.4 7.3 2.3 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 TEX13 PF15186.6 gi|313124890|ref|YP_004035154.1| - 3.4 7.4 15.7 0.79 9.4 8.4 2.0 2 0 0 2 2 2 0 Testis-expressed sequence 13 protein family DUF4446 PF14584.6 gi|313124890|ref|YP_004035154.1| - 3.4 7.6 11.5 6.7 6.7 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) FUSC PF04632.12 gi|313124890|ref|YP_004035154.1| - 4.4 5.7 6.5 6.9 5.1 6.5 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family HNOBA PF07701.14 gi|313124890|ref|YP_004035154.1| - 4.6 6.6 13.2 0.23 10.9 1.4 2.1 2 0 0 2 2 2 0 Heme NO binding associated USP8_interact PF08941.10 gi|313124890|ref|YP_004035154.1| - 4.6 7.0 12.1 3.7 7.3 0.2 2.3 2 0 0 2 2 2 0 USP8 interacting DUF932 PF06067.11 gi|313124890|ref|YP_004035154.1| - 4.6 6.9 8.9 6.6 6.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF932) Nsp1_C PF05064.13 gi|313124890|ref|YP_004035154.1| - 4.8 7.0 19.8 3.8 7.3 3.4 2.4 2 0 0 2 2 2 0 Nsp1-like C-terminal region CLZ PF16526.5 gi|313124890|ref|YP_004035154.1| - 4.8 7.6 19.5 7.7 6.9 9.7 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Vps53_N PF04100.12 gi|313124890|ref|YP_004035154.1| - 4.9 6.0 12.9 6.3 5.6 5.4 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal zf-C4H2 PF10146.9 gi|313124890|ref|YP_004035154.1| - 4.9 7.4 12.8 5 7.4 1.6 2.1 2 0 0 2 2 2 0 Zinc finger-containing protein GPS2_interact PF15784.5 gi|313124890|ref|YP_004035154.1| - 5.1 7.6 20.7 2.4 8.7 9.2 2.2 2 0 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain DUF16 PF01519.16 gi|313124890|ref|YP_004035154.1| - 5.2 7.6 20.4 7.1 7.2 7.8 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 FAD-SLDH PF12318.8 gi|313124890|ref|YP_004035154.1| - 5.9 6.9 9.2 1.2 9.1 4.1 2.0 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase PRKG1_interact PF15898.5 gi|313124890|ref|YP_004035154.1| - 6.4 7.7 17.1 2.7 9.0 1.0 2.3 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain Fungal_TACC PF12709.7 gi|313124890|ref|YP_004035154.1| - 6.4 7.3 18.9 0.98 9.9 4.2 2.4 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins Cauli_DNA-bind PF03310.13 gi|313124890|ref|YP_004035154.1| - 6.6 6.8 8.4 14 5.8 2.4 2.2 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein DLP_helical PF18709.1 gi|313124890|ref|YP_004035154.1| - 6.7 5.8 15.9 3.2 6.9 2.2 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain GrpE PF01025.19 gi|313124890|ref|YP_004035154.1| - 6.8 6.3 19.6 3.5 7.3 2.5 2.2 2 0 0 2 2 2 0 GrpE TolA_bind_tri PF16331.5 gi|313124890|ref|YP_004035154.1| - 6.9 6.8 35.5 0.14 12.2 6.2 2.6 2 0 0 2 2 2 0 TolA binding protein trimerisation LMBR1 PF04791.16 gi|313124890|ref|YP_004035154.1| - 7 5.4 7.4 15 4.3 7.4 1.4 1 1 0 1 1 1 0 LMBR1-like membrane protein CASP_C PF08172.12 gi|313124890|ref|YP_004035154.1| - 8.3 5.7 18.1 64 2.8 18.1 2.0 1 1 0 1 1 1 0 CASP C terminal ERM PF00769.19 gi|313124890|ref|YP_004035154.1| - 8.8 6.1 26.9 1.6 8.5 3.2 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Cep57_CLD_2 PF14197.6 gi|313124890|ref|YP_004035154.1| - 8.9 6.5 17.3 8.2 6.6 3.3 2.5 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 adh_short PF00106.25 gi|313124890|ref|YP_004035154.1| - 9.9 5.6 8.3 0.71 9.3 0.9 2.2 1 1 1 2 2 2 0 short chain dehydrogenase Ribosomal_L18A PF01775.17 gi|313124891|ref|YP_004035155.1| - 3.5e-10 40.0 0.0 3.8e-10 39.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|313124892|ref|YP_004035156.1| - 1.6e-69 233.3 0.1 1.9e-69 233.1 0.1 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|313124893|ref|YP_004035157.1| - 2.8e-06 27.5 0.0 3.6e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|313124894|ref|YP_004035158.1| - 8.4e-21 73.3 7.7 9.8e-21 73.1 7.7 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein EamA PF00892.20 gi|313124895|ref|YP_004035159.1| - 1.9e-35 122.0 34.5 1.9e-20 73.5 15.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family CrgA PF06781.12 gi|313124895|ref|YP_004035159.1| - 7.7 6.7 10.0 2.3 8.4 0.4 3.8 3 1 1 4 4 4 0 Cell division protein CrgA LigT_PEase PF02834.16 gi|313124896|ref|YP_004035160.1| - 1.6e-23 82.7 0.0 4e-12 46.2 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|313124896|ref|YP_004035160.1| - 2e-17 63.5 0.1 2.4e-17 63.2 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|313124896|ref|YP_004035160.1| - 5.4e-09 36.2 0.0 6.5e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Peptidase_S66 PF02016.15 gi|313124896|ref|YP_004035160.1| - 0.016 15.3 0.0 0.034 14.3 0.0 1.5 1 1 0 1 1 1 0 LD-carboxypeptidase N-terminal domain Acetyltransf_2 PF00797.17 gi|313124897|ref|YP_004035161.1| - 4.3e-50 170.7 0.0 4.9e-50 170.6 0.0 1.0 1 0 0 1 1 1 1 N-acetyltransferase TPR_1 PF00515.28 gi|313124898|ref|YP_004035162.1| - 7.5e-26 88.9 6.8 2.6e-08 33.3 0.3 5.1 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|313124898|ref|YP_004035162.1| - 1e-23 81.5 13.5 7.5e-07 28.8 0.6 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|313124898|ref|YP_004035162.1| - 8.8e-23 78.6 4.2 0.00011 22.1 0.3 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|313124898|ref|YP_004035162.1| - 2.1e-19 69.9 18.4 1.2e-08 35.4 1.8 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|313124898|ref|YP_004035162.1| - 8.2e-16 57.4 6.1 5.9e-05 22.7 0.0 4.7 2 1 2 4 4 4 4 TPR repeat TPR_12 PF13424.6 gi|313124898|ref|YP_004035162.1| - 9.7e-16 57.8 19.3 2.1e-10 40.8 6.0 3.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|313124898|ref|YP_004035162.1| - 3.3e-12 46.1 20.4 0.00016 22.2 0.7 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|313124898|ref|YP_004035162.1| - 2.6e-11 43.1 2.9 9.2e-05 22.6 0.0 4.3 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|313124898|ref|YP_004035162.1| - 3.3e-11 43.2 10.1 0.0002 21.4 1.4 3.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|313124898|ref|YP_004035162.1| - 5.7e-08 32.3 13.9 0.00011 22.0 0.4 4.8 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|313124898|ref|YP_004035162.1| - 5.1e-07 29.4 20.1 0.00081 19.2 0.3 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|313124898|ref|YP_004035162.1| - 2.1e-06 28.1 19.5 0.00088 19.7 2.7 3.5 2 1 0 3 3 3 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|313124898|ref|YP_004035162.1| - 2.3e-05 24.5 12.1 0.093 12.8 0.5 4.2 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_6 PF13174.6 gi|313124898|ref|YP_004035162.1| - 5.2e-05 23.6 7.0 7.5 7.4 0.1 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|313124898|ref|YP_004035162.1| - 6.2e-05 23.1 0.9 0.36 11.1 0.1 2.6 2 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC5 PF12862.7 gi|313124898|ref|YP_004035162.1| - 0.00029 20.8 5.7 0.3 11.2 0.6 3.5 1 1 1 2 2 2 2 Anaphase-promoting complex subunit 5 TPR_4 PF07721.14 gi|313124898|ref|YP_004035162.1| - 0.00089 19.7 15.1 0.08 13.6 0.9 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat YfiO PF13525.6 gi|313124898|ref|YP_004035162.1| - 0.011 15.5 0.5 0.011 15.5 0.5 1.7 2 0 0 2 2 2 0 Outer membrane lipoprotein TPR_5 PF12688.7 gi|313124898|ref|YP_004035162.1| - 0.02 15.1 2.9 0.63 10.3 0.1 2.5 2 1 0 2 2 2 0 Tetratrico peptide repeat CAF1 PF04857.20 gi|313124898|ref|YP_004035162.1| - 0.03 13.5 1.0 0.039 13.1 1.0 1.1 1 0 0 1 1 1 0 CAF1 family ribonuclease Fis1_TPR_C PF14853.6 gi|313124898|ref|YP_004035162.1| - 0.083 13.0 6.5 3 8.0 0.0 3.2 3 0 0 3 3 2 0 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.6 gi|313124898|ref|YP_004035162.1| - 0.29 11.5 10.1 0.3 11.4 1.3 3.1 1 1 2 3 3 3 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|313124898|ref|YP_004035162.1| - 3 7.7 9.2 15 5.5 0.8 3.1 3 0 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal DUF424 PF04242.13 gi|313124899|ref|YP_004035163.1| - 5.1e-29 100.4 0.0 5.7e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Aminotran_5 PF00266.19 gi|313124900|ref|YP_004035164.1| - 7.5e-150 499.0 0.0 8.5e-150 498.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|313124900|ref|YP_004035164.1| - 9.1e-12 45.0 0.2 1.4e-11 44.3 0.2 1.3 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|313124900|ref|YP_004035164.1| - 1.5e-07 31.0 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|313124900|ref|YP_004035164.1| - 1.6e-05 23.7 0.0 2.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|313124900|ref|YP_004035164.1| - 0.00039 19.3 0.0 0.0011 17.8 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|313124900|ref|YP_004035164.1| - 0.012 14.6 0.1 0.025 13.6 0.1 1.5 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase YPEB PF14620.6 gi|313124900|ref|YP_004035164.1| - 0.096 12.0 0.3 2 7.7 0.1 2.1 2 0 0 2 2 2 0 YpeB sporulation NifU_N PF01592.16 gi|313124901|ref|YP_004035165.1| - 7.1e-29 100.5 0.1 8.2e-29 100.3 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.15 gi|313124901|ref|YP_004035165.1| - 0.057 13.3 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain Rad51 PF08423.11 gi|313124902|ref|YP_004035166.1| - 4.5e-72 242.4 0.0 4.4e-71 239.1 0.0 1.9 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|313124902|ref|YP_004035166.1| - 1.3e-11 45.0 0.1 1.2e-10 41.8 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.21 gi|313124902|ref|YP_004035166.1| - 9.5e-08 31.8 0.0 0.00043 19.8 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|313124902|ref|YP_004035166.1| - 1.1e-06 28.2 0.3 0.00021 21.0 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|313124902|ref|YP_004035166.1| - 1.5e-06 28.0 0.0 2.2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|313124902|ref|YP_004035166.1| - 2.4e-05 24.3 0.0 7.2e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif ATPase PF06745.13 gi|313124902|ref|YP_004035166.1| - 7e-05 22.3 0.2 0.00036 20.0 0.2 2.2 1 1 0 1 1 1 1 KaiC Cdd1 PF11731.8 gi|313124902|ref|YP_004035166.1| - 0.00044 20.4 0.0 0.00092 19.4 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|313124902|ref|YP_004035166.1| - 0.0035 17.1 0.0 0.023 14.5 0.0 2.4 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|313124902|ref|YP_004035166.1| - 0.045 14.1 0.0 0.22 11.9 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif HHH_3 PF12836.7 gi|313124902|ref|YP_004035166.1| - 0.14 12.5 0.0 12 6.2 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif SH3_16 PF18348.1 gi|313124904|ref|YP_004035168.1| - 0.04 13.7 0.3 0.095 12.5 0.3 1.6 1 0 0 1 1 1 0 Bacterial dipeptidyl-peptidase Sh3 domain Peptidase_M48 PF01435.18 gi|313124905|ref|YP_004035169.1| - 6.9e-44 150.0 0.0 1e-43 149.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|313124905|ref|YP_004035169.1| - 1.6e-07 30.9 0.1 4.2e-05 22.9 0.0 2.3 2 1 0 2 2 2 2 BlaR1 peptidase M56 SprT-like PF10263.9 gi|313124905|ref|YP_004035169.1| - 0.089 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Phage_holin_3_6 PF07332.11 gi|313124905|ref|YP_004035169.1| - 0.11 12.6 0.3 0.11 12.6 0.3 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|313124905|ref|YP_004035169.1| - 2.7 6.7 6.1 3.8 6.2 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Pribosyltran PF00156.27 gi|313124906|ref|YP_004035170.1| - 9.8e-27 93.4 0.2 1.2e-26 93.1 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|313124906|ref|YP_004035170.1| - 6.9e-06 25.7 0.2 1.3e-05 24.7 0.1 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|313124906|ref|YP_004035170.1| - 0.0037 16.8 0.1 0.034 13.6 0.0 2.3 2 1 0 2 2 2 1 Phosphoribosyl transferase NMD3 PF04981.13 gi|313124907|ref|YP_004035171.1| - 8.7e-63 212.0 0.1 1.1e-62 211.7 0.1 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|313124907|ref|YP_004035171.1| - 0.00062 20.0 0.6 0.032 14.5 0.0 2.7 3 0 0 3 3 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|313124907|ref|YP_004035171.1| - 0.0023 17.9 4.2 0.11 12.5 2.2 3.1 2 1 0 2 2 2 1 Double zinc ribbon DUF2703 PF10865.8 gi|313124907|ref|YP_004035171.1| - 0.009 16.2 0.4 0.021 15.0 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF2703) FYVE PF01363.21 gi|313124907|ref|YP_004035171.1| - 0.018 15.2 2.2 1.3 9.2 0.5 2.6 2 0 0 2 2 2 0 FYVE zinc finger eIF-5_eIF-2B PF01873.17 gi|313124907|ref|YP_004035171.1| - 0.2 11.6 1.8 0.35 10.8 0.3 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 GFA PF04828.14 gi|313124907|ref|YP_004035171.1| - 0.27 11.6 3.4 33 4.9 0.0 3.6 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.6 gi|313124907|ref|YP_004035171.1| - 0.41 10.1 10.7 3.9 7.0 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|313124907|ref|YP_004035171.1| - 1.8 8.2 4.2 4.9 6.8 0.0 3.1 3 0 0 3 3 3 0 Zinc finger domain zf-NADH-PPase PF09297.11 gi|313124907|ref|YP_004035171.1| - 1.9 8.2 12.6 1 9.0 0.4 3.0 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|313124907|ref|YP_004035171.1| - 1.9 8.3 12.3 0.75 9.6 0.3 3.6 4 0 0 4 4 4 0 zinc-ribbon domain CxC4 PF18717.1 gi|313124907|ref|YP_004035171.1| - 3 7.7 5.3 36 4.2 0.1 3.1 3 1 0 3 3 3 0 CxC4 like cysteine cluster associated with KDZ transposases zf_UBZ PF18439.1 gi|313124907|ref|YP_004035171.1| - 5.3 6.7 12.7 0.59 9.8 0.2 3.6 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger UPF0175 PF03683.13 gi|313124908|ref|YP_004035172.1| - 7.4e-07 28.8 0.1 8.6e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) AbiEi_4 PF13338.6 gi|313124908|ref|YP_004035172.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin Helicase_C_2 PF13307.6 gi|313124909|ref|YP_004035173.1| - 1.3e-24 87.3 0.0 1.9e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|313124909|ref|YP_004035173.1| - 1.6e-05 24.6 0.0 2.7e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_22 PF13401.6 gi|313124909|ref|YP_004035173.1| - 6.2e-05 23.3 0.1 0.0011 19.3 0.1 2.7 2 1 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|313124909|ref|YP_004035173.1| - 7.8e-05 22.5 0.0 0.11 12.2 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|313124909|ref|YP_004035173.1| - 0.00023 21.2 0.0 0.1 12.6 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|313124909|ref|YP_004035173.1| - 0.00024 21.5 0.8 0.0039 17.6 0.7 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|313124909|ref|YP_004035173.1| - 0.00089 19.0 0.5 0.69 9.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|313124909|ref|YP_004035173.1| - 0.022 14.0 0.0 5.1 6.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|313124909|ref|YP_004035173.1| - 0.023 15.0 0.0 0.048 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313124909|ref|YP_004035173.1| - 0.11 13.0 0.1 1.2 9.6 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|313124909|ref|YP_004035173.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.21 gi|313124909|ref|YP_004035173.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CxxCxxCC PF03692.15 gi|313124911|ref|YP_004035175.1| - 6.2e-06 26.8 0.9 0.0043 17.7 0.0 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain Epimerase PF01370.21 gi|313124912|ref|YP_004035176.1| - 4.8e-12 45.9 0.3 8.5e-10 38.5 0.1 2.4 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|313124912|ref|YP_004035176.1| - 1.6e-11 44.4 0.2 5.7e-09 36.1 0.1 2.3 2 0 0 2 2 2 2 NAD(P)H-binding NmrA PF05368.13 gi|313124912|ref|YP_004035176.1| - 8.3e-08 32.1 0.0 3.5e-07 30.0 0.1 1.8 2 0 0 2 2 2 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|313124912|ref|YP_004035176.1| - 1.2e-06 28.2 0.1 2.3e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|313124912|ref|YP_004035176.1| - 1.1e-05 24.8 0.0 2.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|313124912|ref|YP_004035176.1| - 0.00034 19.8 0.0 0.00093 18.4 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|313124912|ref|YP_004035176.1| - 0.0014 17.7 0.0 0.014 14.4 0.0 2.0 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DapB_N PF01113.20 gi|313124912|ref|YP_004035176.1| - 0.04 14.0 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|313124912|ref|YP_004035176.1| - 0.067 13.6 0.0 0.18 12.2 0.0 1.8 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.25 gi|313124912|ref|YP_004035176.1| - 0.22 11.0 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase MmgE_PrpD PF03972.14 gi|313124914|ref|YP_004035178.1| - 0.063 11.8 0.2 0.065 11.8 0.2 1.0 1 0 0 1 1 1 0 MmgE/PrpD family Peptidase_M16 PF00675.20 gi|313124914|ref|YP_004035178.1| - 0.096 12.7 0.0 0.1 12.6 0.0 1.0 1 0 0 1 1 1 0 Insulinase (Peptidase family M16) PHP PF02811.19 gi|313124917|ref|YP_004035181.1| - 2.7e-05 24.5 0.0 2.7e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|313124917|ref|YP_004035181.1| - 0.0017 18.1 0.1 0.0089 15.8 0.0 2.3 2 0 0 2 2 2 1 PHP-associated PyrI_C PF02748.15 gi|313124918|ref|YP_004035182.1| - 0.6 10.1 4.4 0.49 10.3 2.2 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain SNARE_assoc PF09335.11 gi|313124920|ref|YP_004035184.1| - 5.3e-09 36.6 3.0 1e-08 35.7 2.9 1.5 1 1 0 1 1 1 1 SNARE associated Golgi protein DUF3868 PF12984.7 gi|313124920|ref|YP_004035184.1| - 0.14 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3868) ALAD PF00490.21 gi|313124921|ref|YP_004035185.1| - 3.7e-144 479.7 0.6 4.1e-144 479.6 0.6 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ammonium_transp PF00909.21 gi|313124922|ref|YP_004035186.1| - 9e-96 321.0 40.7 1.1e-95 320.8 40.7 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|313124922|ref|YP_004035186.1| - 0.19 11.7 0.1 0.19 11.7 0.1 2.3 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.22 gi|313124923|ref|YP_004035187.1| - 1.1e-34 119.1 0.1 1.2e-34 118.9 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CPBP PF02517.16 gi|313124924|ref|YP_004035188.1| - 8.6e-07 29.3 9.2 3.5e-06 27.3 9.2 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Aminotran_3 PF00202.21 gi|313124925|ref|YP_004035189.1| - 7.8e-66 222.4 0.0 1.6e-65 221.3 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|313124925|ref|YP_004035189.1| - 0.0096 15.1 0.0 0.016 14.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II PTS_EIIC_2 PF13303.6 gi|313124927|ref|YP_004035191.1| - 0.01 14.9 5.7 0.012 14.6 5.7 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC MerC PF03203.14 gi|313124927|ref|YP_004035191.1| - 0.27 11.7 10.7 0.39 11.2 10.7 1.3 1 0 0 1 1 1 0 MerC mercury resistance protein ABC2_membrane_3 PF12698.7 gi|313124927|ref|YP_004035191.1| - 2.3 7.2 18.6 1.1e+02 1.7 18.6 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4149 PF13664.6 gi|313124927|ref|YP_004035191.1| - 6 7.3 12.8 5 7.5 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) PQQ_2 PF13360.6 gi|313124928|ref|YP_004035192.1| - 4.3e-26 91.9 15.3 6.5e-17 61.9 2.4 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|313124928|ref|YP_004035192.1| - 1.2e-17 63.8 29.0 9e-05 22.8 0.2 7.9 6 3 1 7 7 7 5 PQQ-like domain PQQ PF01011.21 gi|313124928|ref|YP_004035192.1| - 4.6e-14 51.6 8.5 0.0021 17.9 0.1 7.1 8 0 0 8 8 8 5 PQQ enzyme repeat Porphobil_deam PF01379.20 gi|313124929|ref|YP_004035193.1| - 1.6e-66 223.7 0.2 6.3e-51 172.8 0.2 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|313124929|ref|YP_004035193.1| - 1.7e-11 44.3 0.1 4.1e-11 43.1 0.1 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain GlutR_dimer PF00745.20 gi|313124929|ref|YP_004035193.1| - 0.24 11.9 4.1 3.3 8.2 0.0 3.1 4 0 0 4 4 4 0 Glutamyl-tRNAGlu reductase, dimerisation domain TP_methylase PF00590.20 gi|313124930|ref|YP_004035194.1| - 1.9e-55 188.1 1.3 2.3e-55 187.8 1.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|313124930|ref|YP_004035194.1| - 0.13 12.7 0.1 0.38 11.1 0.1 1.9 1 1 0 1 1 1 0 Radical SAM superfamily HEM4 PF02602.15 gi|313124931|ref|YP_004035195.1| - 2.4e-41 141.6 0.0 2.9e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DAHP_snth_FXD PF18152.1 gi|313124931|ref|YP_004035195.1| - 0.015 15.1 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain DHHA1 PF02272.19 gi|313124932|ref|YP_004035196.1| - 1e-17 64.8 1.5 2.7e-17 63.5 1.5 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|313124932|ref|YP_004035196.1| - 0.074 13.3 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 DHH family ABC2_membrane_2 PF12679.7 gi|313124933|ref|YP_004035197.1| - 0.0012 18.2 6.4 0.0012 18.2 6.4 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313124933|ref|YP_004035197.1| - 0.0061 16.1 6.1 0.013 15.1 1.2 2.6 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF1345 PF07077.11 gi|313124933|ref|YP_004035197.1| - 0.011 15.4 0.5 0.034 13.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) ABC_tran PF00005.27 gi|313124934|ref|YP_004035198.1| - 9.8e-28 97.4 0.0 1.5e-27 96.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313124934|ref|YP_004035198.1| - 1e-08 35.4 0.5 0.0013 18.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313124934|ref|YP_004035198.1| - 2e-05 24.3 0.1 4e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313124934|ref|YP_004035198.1| - 0.00015 22.3 0.0 0.00027 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|313124934|ref|YP_004035198.1| - 0.0044 16.5 0.1 0.078 12.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|313124934|ref|YP_004035198.1| - 0.0071 16.1 0.0 0.095 12.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain MukB PF04310.12 gi|313124934|ref|YP_004035198.1| - 0.014 15.3 0.1 0.031 14.1 0.1 1.6 2 0 0 2 2 2 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|313124934|ref|YP_004035198.1| - 0.043 13.7 0.1 0.082 12.8 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|313124934|ref|YP_004035198.1| - 0.043 13.5 0.5 0.19 11.4 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313124934|ref|YP_004035198.1| - 0.05 13.8 0.1 0.47 10.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|313124934|ref|YP_004035198.1| - 0.076 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.8 gi|313124934|ref|YP_004035198.1| - 0.21 10.8 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) HTH_11 PF08279.12 gi|313124935|ref|YP_004035199.1| - 5.2e-08 32.7 0.0 1.3e-07 31.4 0.0 1.6 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.7 gi|313124935|ref|YP_004035199.1| - 1e-07 31.9 0.0 1.8e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313124935|ref|YP_004035199.1| - 6.8e-07 29.1 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313124935|ref|YP_004035199.1| - 1.7e-06 27.5 0.0 3.2e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|313124935|ref|YP_004035199.1| - 3.3e-06 26.8 0.1 7.8e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|313124935|ref|YP_004035199.1| - 2.1e-05 24.5 0.0 3.3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|313124935|ref|YP_004035199.1| - 2.5e-05 23.9 0.0 4.7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|313124935|ref|YP_004035199.1| - 2.7e-05 24.0 0.0 5.4e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313124935|ref|YP_004035199.1| - 3.4e-05 23.6 0.1 5.5e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.6 gi|313124935|ref|YP_004035199.1| - 4.1e-05 22.9 0.0 8.1e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.12 gi|313124935|ref|YP_004035199.1| - 4.4e-05 23.1 0.0 8.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|313124935|ref|YP_004035199.1| - 6.5e-05 22.8 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313124935|ref|YP_004035199.1| - 7.7e-05 22.6 0.0 0.00017 21.5 0.0 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313124935|ref|YP_004035199.1| - 0.00011 22.0 0.0 0.00026 20.7 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|313124935|ref|YP_004035199.1| - 0.00015 21.6 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|313124935|ref|YP_004035199.1| - 0.00017 21.3 0.0 0.00041 20.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|313124935|ref|YP_004035199.1| - 0.00022 21.3 0.0 0.0004 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|313124935|ref|YP_004035199.1| - 0.0004 20.7 0.0 0.00063 20.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR PF03551.14 gi|313124935|ref|YP_004035199.1| - 0.00047 20.1 0.0 0.00071 19.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_7 PF02796.15 gi|313124935|ref|YP_004035199.1| - 0.00086 19.3 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase FUR PF01475.19 gi|313124935|ref|YP_004035199.1| - 0.0023 18.1 0.0 0.0031 17.7 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family TetR_N PF00440.23 gi|313124935|ref|YP_004035199.1| - 0.0024 17.6 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_6 PF01418.17 gi|313124935|ref|YP_004035199.1| - 0.0024 17.8 0.1 0.0064 16.5 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family HTH_17 PF12728.7 gi|313124935|ref|YP_004035199.1| - 0.0033 17.6 0.0 0.0046 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|313124935|ref|YP_004035199.1| - 0.0034 16.9 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313124935|ref|YP_004035199.1| - 0.006 17.1 0.1 0.012 16.1 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|313124935|ref|YP_004035199.1| - 0.0061 16.2 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Replic_Relax PF13814.6 gi|313124935|ref|YP_004035199.1| - 0.0078 16.3 0.1 0.0084 16.2 0.1 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_psq PF05225.16 gi|313124935|ref|YP_004035199.1| - 0.0082 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain GntR PF00392.21 gi|313124935|ref|YP_004035199.1| - 0.0083 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|313124935|ref|YP_004035199.1| - 0.012 15.8 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|313124935|ref|YP_004035199.1| - 0.017 14.6 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HxlR PF01638.17 gi|313124935|ref|YP_004035199.1| - 0.021 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_22 PF13309.6 gi|313124935|ref|YP_004035199.1| - 0.021 14.9 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain Mga PF05043.13 gi|313124935|ref|YP_004035199.1| - 0.022 15.3 0.0 0.053 14.1 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain CENP-B_N PF04218.13 gi|313124935|ref|YP_004035199.1| - 0.024 14.3 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_3 PF01381.22 gi|313124935|ref|YP_004035199.1| - 0.035 14.2 0.0 0.081 13.0 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix HTH_40 PF14493.6 gi|313124935|ref|YP_004035199.1| - 0.04 14.4 0.0 0.057 13.9 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|313124935|ref|YP_004035199.1| - 0.045 13.5 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Tnp_1_2 PF13022.6 gi|313124935|ref|YP_004035199.1| - 0.045 13.9 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Cdc6_C PF09079.11 gi|313124935|ref|YP_004035199.1| - 0.057 13.4 0.1 0.073 13.1 0.1 1.2 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain Rio2_N PF09202.11 gi|313124935|ref|YP_004035199.1| - 0.062 13.5 0.0 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal MerR PF00376.23 gi|313124935|ref|YP_004035199.1| - 0.067 13.0 0.1 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein Sigma70_ECF PF07638.11 gi|313124935|ref|YP_004035199.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_31 PF13560.6 gi|313124935|ref|YP_004035199.1| - 0.084 13.2 0.1 0.19 12.1 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|313124935|ref|YP_004035199.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF1492 PF07374.11 gi|313124935|ref|YP_004035199.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_46 PF15977.5 gi|313124935|ref|YP_004035199.1| - 0.13 12.3 0.1 0.9 9.6 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix DNA binding SnoaL PF07366.12 gi|313124937|ref|YP_004035201.1| - 8.5e-31 106.4 0.0 9.7e-31 106.2 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|313124937|ref|YP_004035201.1| - 9.7e-23 80.8 0.1 1.1e-22 80.5 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|313124937|ref|YP_004035201.1| - 0.00066 20.0 0.0 0.00087 19.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Peptidase_A4 PF01828.17 gi|313124937|ref|YP_004035201.1| - 0.076 12.5 0.0 0.095 12.2 0.0 1.1 1 0 0 1 1 1 0 Peptidase A4 family SnoaL_4 PF13577.6 gi|313124937|ref|YP_004035201.1| - 0.15 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain HTH_10 PF04967.12 gi|313124938|ref|YP_004035202.1| - 2.1e-14 53.0 0.1 3.4e-14 52.4 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|313124938|ref|YP_004035202.1| - 0.0011 18.7 0.1 0.0071 16.1 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313124938|ref|YP_004035202.1| - 0.0073 16.2 0.1 0.019 14.8 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313124938|ref|YP_004035202.1| - 0.026 14.6 0.3 0.089 12.9 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313124938|ref|YP_004035202.1| - 0.037 13.5 0.4 0.33 10.5 0.1 2.4 2 1 0 2 2 2 0 Sigma-70, region 4 FANCI_S1 PF14675.6 gi|313124938|ref|YP_004035202.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 FANCI solenoid 1 NifU PF01106.17 gi|313124942|ref|YP_004035206.1| - 2e-13 50.2 0.2 4.4e-13 49.2 0.2 1.6 1 1 1 2 2 2 2 NifU-like domain Sulfatase PF00884.23 gi|313124943|ref|YP_004035207.1| - 1.1e-45 156.4 0.4 1.7e-45 155.8 0.4 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|313124943|ref|YP_004035207.1| - 9.3e-13 48.5 0.6 2.3e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|313124943|ref|YP_004035207.1| - 0.022 13.8 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) ApbA_C PF08546.11 gi|313124944|ref|YP_004035208.1| - 3.1e-33 114.6 0.2 4.4e-33 114.1 0.2 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|313124944|ref|YP_004035208.1| - 2.1e-26 92.4 0.5 3.9e-26 91.5 0.1 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Rubredoxin_2 PF18073.1 gi|313124945|ref|YP_004035209.1| - 6.6e-05 22.5 3.5 0.00024 20.7 0.0 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain PRC PF05239.16 gi|313124945|ref|YP_004035209.1| - 0.008 16.2 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 PRC-barrel domain Zn-ribbon_8 PF09723.10 gi|313124945|ref|YP_004035209.1| - 0.012 15.7 0.7 0.02 15.0 0.7 1.4 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|313124945|ref|YP_004035209.1| - 0.028 14.4 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HalOD2 PF18547.1 gi|313124945|ref|YP_004035209.1| - 0.047 13.6 6.2 0.22 11.4 0.1 3.1 3 0 0 3 3 3 0 Halobacterial output domain 2 Rubredoxin PF00301.20 gi|313124945|ref|YP_004035209.1| - 0.52 10.4 4.7 4.9 7.3 1.1 2.4 1 1 1 2 2 2 0 Rubredoxin PolC_DP2 PF03833.13 gi|313124946|ref|YP_004035210.1| - 0 1326.3 0.0 0 1324.6 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|313124946|ref|YP_004035210.1| - 0.00055 19.9 18.0 0.091 12.8 6.4 3.3 2 1 1 3 3 3 3 Double zinc ribbon HypA PF01155.19 gi|313124946|ref|YP_004035210.1| - 0.59 10.2 18.0 2.5 8.2 0.2 3.4 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|313124946|ref|YP_004035210.1| - 0.6 10.1 16.8 11 6.1 0.1 3.0 2 1 0 2 2 2 0 zinc-ribbons tRNA-synt_1g PF09334.11 gi|313124946|ref|YP_004035210.1| - 1.9 7.2 4.4 3.1 6.5 4.4 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (M) Sigma70_ner PF04546.13 gi|313124946|ref|YP_004035210.1| - 3.3 7.5 7.5 7.6 6.4 7.5 1.5 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF296 PF03479.15 gi|313124947|ref|YP_004035211.1| - 3.6e-19 69.1 0.0 4.1e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain CBS PF00571.28 gi|313124950|ref|YP_004035214.1| - 8.8e-33 112.6 14.2 1.5e-11 44.6 1.0 4.1 4 0 0 4 4 4 4 CBS domain HGTP_anticodon PF03129.20 gi|313124951|ref|YP_004035215.1| - 1.9e-21 76.0 0.1 5.6e-21 74.5 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|313124951|ref|YP_004035215.1| - 1.1e-07 32.0 0.0 1.3e-06 28.6 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|313124951|ref|YP_004035215.1| - 0.0053 16.1 0.3 0.38 10.2 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|313124951|ref|YP_004035215.1| - 0.26 10.8 1.7 2.5 7.7 1.7 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|313124951|ref|YP_004035215.1| - 0.27 11.2 0.3 12 5.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FRD2 PF03197.13 gi|313124951|ref|YP_004035215.1| - 0.48 10.8 2.0 0.57 10.5 0.3 2.0 2 0 0 2 2 2 0 Bacteriophage FRD2 protein zinc_ribbon_2 PF13240.6 gi|313124951|ref|YP_004035215.1| - 0.55 10.0 2.8 0.6 9.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF348 PF03990.14 gi|313124951|ref|YP_004035215.1| - 3.7 7.4 9.4 9 6.1 3.0 3.1 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain EI24 PF07264.11 gi|313124952|ref|YP_004035216.1| - 0.16 12.2 7.6 0.27 11.5 7.6 1.4 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) TrkA_C PF02080.21 gi|313124953|ref|YP_004035217.1| - 2.1e-21 75.5 0.1 6.9e-21 73.9 0.0 1.8 2 0 0 2 2 2 1 TrkA-C domain KH_1 PF00013.29 gi|313124953|ref|YP_004035217.1| - 0.072 12.9 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 KH domain Na_H_Exchanger PF00999.21 gi|313124954|ref|YP_004035218.1| - 2e-48 165.1 43.0 2.5e-48 164.8 43.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CDI PF02234.19 gi|313124955|ref|YP_004035219.1| - 0.12 12.6 0.0 22 5.3 0.0 3.2 3 0 0 3 3 3 0 Cyclin-dependent kinase inhibitor Arginosuc_synth PF00764.19 gi|313124956|ref|YP_004035220.1| - 1.4e-142 475.6 0.0 1.7e-142 475.3 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|313124956|ref|YP_004035220.1| - 4.9e-05 22.9 0.0 9.2e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|313124956|ref|YP_004035220.1| - 0.0025 17.0 0.0 0.0038 16.4 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|313124956|ref|YP_004035220.1| - 0.0032 17.2 0.3 0.0054 16.4 0.3 1.7 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|313124956|ref|YP_004035220.1| - 0.0059 15.5 0.0 0.0088 14.9 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase DUF2156 PF09924.9 gi|313124956|ref|YP_004035220.1| - 0.05 12.6 0.1 0.19 10.7 0.0 1.9 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2156) Lyase_1 PF00206.20 gi|313124957|ref|YP_004035221.1| - 6e-57 193.4 0.5 1.7e-56 191.9 0.1 1.8 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|313124957|ref|YP_004035221.1| - 1.1e-15 58.1 2.2 1.1e-15 58.1 2.2 2.7 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Syntaxin-6_N PF09177.11 gi|313124957|ref|YP_004035221.1| - 0.25 11.9 1.4 3.6 8.2 0.3 3.1 4 1 0 4 4 4 0 Syntaxin 6, N-terminal Phage_fiber_2 PF03406.13 gi|313124957|ref|YP_004035221.1| - 0.36 10.4 0.0 0.36 10.4 0.0 4.1 4 0 0 4 4 4 0 Phage tail fibre repeat RimK PF08443.11 gi|313124959|ref|YP_004035223.1| - 4.2e-26 91.7 0.0 5.4e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|313124959|ref|YP_004035223.1| - 3.7e-09 36.8 0.0 5.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|313124959|ref|YP_004035223.1| - 4.3e-09 36.0 0.0 7.7e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.22 gi|313124959|ref|YP_004035223.1| - 7.4e-07 28.9 0.1 2.5e-06 27.2 0.0 1.8 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|313124959|ref|YP_004035223.1| - 7.1e-06 25.7 0.0 1.9e-05 24.3 0.0 1.8 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|313124959|ref|YP_004035223.1| - 0.00025 20.6 0.0 0.00079 18.9 0.0 2.0 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|313124959|ref|YP_004035223.1| - 0.0025 17.1 0.0 0.038 13.2 0.0 2.2 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp Semialdhyde_dh PF01118.24 gi|313124960|ref|YP_004035224.1| - 1.6e-27 96.3 0.0 2.9e-27 95.5 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|313124960|ref|YP_004035224.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|313124960|ref|YP_004035224.1| - 0.014 15.5 0.0 0.032 14.4 0.0 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.6 gi|313124960|ref|YP_004035224.1| - 0.02 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding AA_kinase PF00696.28 gi|313124961|ref|YP_004035225.1| - 1.8e-35 122.7 5.0 2.2e-35 122.4 5.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Arteri_Gl PF00951.18 gi|313124961|ref|YP_004035225.1| - 0.14 12.0 0.8 0.26 11.1 0.8 1.4 1 0 0 1 1 1 0 Arterivirus GL envelope glycoprotein Aminotran_3 PF00202.21 gi|313124962|ref|YP_004035226.1| - 8.2e-111 370.5 0.1 1.1e-110 370.1 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|313124962|ref|YP_004035226.1| - 0.021 13.4 0.0 0.12 10.8 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M20 PF01546.28 gi|313124963|ref|YP_004035227.1| - 3.6e-28 98.7 0.4 4.9e-28 98.2 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|313124963|ref|YP_004035227.1| - 6.8e-06 26.0 0.0 1.2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.21 gi|313124964|ref|YP_004035228.1| - 1.7e-50 170.9 0.0 2.7e-50 170.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|313124964|ref|YP_004035228.1| - 4.7e-50 169.7 0.0 6.6e-50 169.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF1440 PF07274.12 gi|313124965|ref|YP_004035229.1| - 7.7e-05 23.1 2.4 7.7e-05 23.1 2.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1440) DUF5518 PF17647.1 gi|313124965|ref|YP_004035229.1| - 0.024 14.8 11.6 0.024 14.8 11.6 2.7 1 1 2 3 3 3 0 Family of unknown function (DUF5518) YqhR PF11085.8 gi|313124965|ref|YP_004035229.1| - 0.03 14.3 9.3 0.076 12.9 9.3 1.6 1 1 0 1 1 1 0 Conserved membrane protein YqhR Phage_holin_2_1 PF04971.12 gi|313124965|ref|YP_004035229.1| - 0.069 13.2 0.2 0.069 13.2 0.2 2.9 2 1 1 3 3 3 0 Bacteriophage P21 holin S DUF1129 PF06570.11 gi|313124965|ref|YP_004035229.1| - 4 6.9 9.3 7.7 5.9 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) CbtA PF09490.10 gi|313124965|ref|YP_004035229.1| - 4.4 7.0 22.3 1.2 8.9 1.2 2.7 2 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtA) DUF4282 PF14110.6 gi|313124965|ref|YP_004035229.1| - 4.6 8.0 13.8 0.75 10.6 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4282) RseC_MucC PF04246.12 gi|313124965|ref|YP_004035229.1| - 6.3 6.8 9.0 0.36 10.8 1.8 2.1 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF1440 PF07274.12 gi|313124966|ref|YP_004035230.1| - 0.014 15.7 2.4 0.034 14.5 1.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1440) YqhR PF11085.8 gi|313124966|ref|YP_004035230.1| - 0.13 12.2 3.7 0.45 10.4 3.7 1.9 1 1 0 1 1 1 0 Conserved membrane protein YqhR Helicase_C_2 PF13307.6 gi|313124967|ref|YP_004035231.1| - 3.1e-35 121.9 0.0 8e-35 120.5 0.0 1.7 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|313124967|ref|YP_004035231.1| - 4.9e-23 81.7 0.4 1e-22 80.6 0.4 1.6 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|313124967|ref|YP_004035231.1| - 3.1e-09 36.9 1.1 5.9e-06 26.2 0.2 3.8 3 1 1 4 4 4 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|313124967|ref|YP_004035231.1| - 6e-06 26.4 0.1 0.00074 19.6 0.1 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|313124967|ref|YP_004035231.1| - 3e-05 23.4 0.1 0.0044 16.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|313124967|ref|YP_004035231.1| - 8.2e-05 22.1 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 KaiC HBB PF06777.11 gi|313124967|ref|YP_004035231.1| - 0.00052 19.8 0.6 0.0053 16.5 0.0 2.4 2 0 0 2 2 2 1 Helical and beta-bridge domain Zot PF05707.12 gi|313124967|ref|YP_004035231.1| - 0.001 18.7 0.2 0.24 11.0 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA PF00004.29 gi|313124967|ref|YP_004035231.1| - 0.0016 18.9 0.4 0.87 10.0 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|313124967|ref|YP_004035231.1| - 0.0072 15.8 0.0 0.019 14.4 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.6 gi|313124967|ref|YP_004035231.1| - 0.015 15.0 2.4 0.034 13.9 0.2 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|313124967|ref|YP_004035231.1| - 0.033 14.6 4.5 0.17 12.2 1.1 3.2 2 1 0 2 2 2 0 AAA ATPase domain AAA_34 PF13872.6 gi|313124967|ref|YP_004035231.1| - 0.054 12.4 0.0 0.096 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA_25 PF13481.6 gi|313124967|ref|YP_004035231.1| - 0.09 12.3 3.1 0.66 9.5 0.1 3.4 3 1 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|313124967|ref|YP_004035231.1| - 0.12 12.7 5.6 0.28 11.4 0.9 2.8 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|313124967|ref|YP_004035231.1| - 0.16 11.8 1.7 0.44 10.3 0.5 2.3 2 1 0 2 2 2 0 AAA domain TPR_MLP1_2 PF07926.12 gi|313124967|ref|YP_004035231.1| - 2.1 8.4 7.9 0.19 11.8 2.2 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein p450 PF00067.22 gi|313124968|ref|YP_004035232.1| - 3.5e-90 303.0 0.0 4.3e-90 302.7 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 2_5_RNA_ligase2 PF13563.6 gi|313124969|ref|YP_004035233.1| - 1.1e-19 70.8 0.0 1.3e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|313124969|ref|YP_004035233.1| - 4.5e-10 39.6 0.1 0.00017 21.7 0.0 2.7 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|313124969|ref|YP_004035233.1| - 3.5e-06 27.1 0.0 4.1e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain DUF5337 PF17272.2 gi|313124970|ref|YP_004035234.1| - 1.9 8.4 5.3 8.3 6.3 0.6 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5337) Spectrin PF00435.21 gi|313124972|ref|YP_004035236.1| - 0.006 17.1 0.2 0.006 17.1 0.2 1.5 2 0 0 2 2 2 1 Spectrin repeat XhlA PF10779.9 gi|313124972|ref|YP_004035236.1| - 0.036 14.3 0.1 0.092 13.0 0.1 1.7 1 0 0 1 1 1 0 Haemolysin XhlA DUF4157 PF13699.6 gi|313124974|ref|YP_004035238.1| - 2.7e-31 107.6 1.2 6.8e-31 106.3 1.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313124974|ref|YP_004035238.1| - 0.016 15.5 0.4 0.035 14.4 0.2 1.6 1 1 0 1 1 1 0 Effector protein PKHD_C PF18331.1 gi|313124974|ref|YP_004035238.1| - 1.2 9.3 3.6 5.1 7.2 0.5 3.0 2 1 0 2 2 2 0 PKHD-type hydroxylase C-terminal domain Band_7 PF01145.25 gi|313124975|ref|YP_004035239.1| - 4.3e-36 124.6 1.3 6.8e-36 123.9 0.8 1.6 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|313124975|ref|YP_004035239.1| - 0.054 13.2 0.1 0.11 12.2 0.1 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family TauE PF01925.19 gi|313124977|ref|YP_004035241.1| - 8.7e-29 100.8 23.4 8.7e-29 100.8 23.4 1.6 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE FA_desaturase PF00487.24 gi|313124977|ref|YP_004035241.1| - 1.2 8.9 17.1 0.73 9.6 4.8 3.2 2 1 0 3 3 3 0 Fatty acid desaturase UvrB_inter PF17757.1 gi|313124979|ref|YP_004035243.1| - 1.2e-32 111.9 0.0 3.3e-32 110.5 0.0 1.8 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|313124979|ref|YP_004035243.1| - 4.8e-21 74.3 0.2 1e-20 73.3 0.2 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|313124979|ref|YP_004035243.1| - 1.9e-17 63.6 0.1 5.5e-17 62.1 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|313124979|ref|YP_004035243.1| - 2.1e-09 37.6 0.1 3.3e-08 33.7 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|313124979|ref|YP_004035243.1| - 7.8e-08 31.8 8.2 7.8e-08 31.8 8.2 3.2 3 0 0 3 3 2 1 UvrB/uvrC motif DEAD PF00270.29 gi|313124979|ref|YP_004035243.1| - 0.00075 19.3 0.1 0.013 15.3 0.0 2.8 3 1 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.6 gi|313124979|ref|YP_004035243.1| - 0.0071 16.3 0.4 0.066 13.2 0.0 2.8 4 0 0 4 4 4 1 Bifunctional transglycosylase second domain DUF87 PF01935.17 gi|313124979|ref|YP_004035243.1| - 0.0097 16.0 0.5 0.086 12.9 0.0 2.7 3 0 0 3 3 3 1 Helicase HerA, central domain AAA_19 PF13245.6 gi|313124979|ref|YP_004035243.1| - 0.016 15.6 0.4 8.2 6.8 0.3 2.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|313124979|ref|YP_004035243.1| - 0.022 15.0 0.3 5 7.4 0.3 2.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|313124979|ref|YP_004035243.1| - 0.039 13.7 0.4 0.37 10.5 0.0 2.5 2 1 1 3 3 3 0 AAA domain RPN7 PF10602.9 gi|313124979|ref|YP_004035243.1| - 0.045 13.5 1.9 3.6 7.2 0.1 3.1 3 0 0 3 3 3 0 26S proteasome subunit RPN7 DNA_circ_N PF07157.12 gi|313124979|ref|YP_004035243.1| - 0.091 13.2 0.0 8.4 6.9 0.0 2.6 2 0 0 2 2 2 0 DNA circularisation protein N-terminus FlaG PF03646.15 gi|313124979|ref|YP_004035243.1| - 0.5 10.6 3.0 4.4 7.5 0.1 3.3 4 0 0 4 4 4 0 FlaG protein CorA PF01544.18 gi|313124979|ref|YP_004035243.1| - 7.1 5.9 8.6 5.4 6.3 0.3 3.7 4 0 0 4 4 4 0 CorA-like Mg2+ transporter protein Apolipoprotein PF01442.18 gi|313124980|ref|YP_004035244.1| - 0.00015 21.7 9.0 0.00023 21.1 9.0 1.3 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain YtxH PF12732.7 gi|313124980|ref|YP_004035244.1| - 0.0034 17.9 4.3 0.03 14.8 4.3 2.1 1 1 0 1 1 1 1 YtxH-like protein cwf21 PF08312.12 gi|313124980|ref|YP_004035244.1| - 0.0078 16.3 0.7 0.032 14.4 0.3 2.2 1 1 1 2 2 2 1 cwf21 domain HemX PF04375.14 gi|313124980|ref|YP_004035244.1| - 0.008 15.5 1.6 0.01 15.1 1.6 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase Cytochrom_B562 PF07361.11 gi|313124980|ref|YP_004035244.1| - 0.014 16.1 0.6 0.04 14.6 0.1 1.8 1 1 1 2 2 2 0 Cytochrome b562 Exonuc_VII_L PF02601.15 gi|313124980|ref|YP_004035244.1| - 0.03 13.9 0.3 0.033 13.7 0.3 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit MT0933_antitox PF14013.6 gi|313124980|ref|YP_004035244.1| - 0.033 14.5 0.7 3.6 8.0 0.0 2.3 2 0 0 2 2 2 0 MT0933-like antitoxin protein CdvA PF18822.1 gi|313124980|ref|YP_004035244.1| - 0.049 13.5 3.1 2.6 7.9 0.4 2.0 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Lant_dehydr_C PF14028.6 gi|313124980|ref|YP_004035244.1| - 0.098 12.2 2.9 0.11 12.0 2.9 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term ATP-synt_B PF00430.18 gi|313124980|ref|YP_004035244.1| - 0.12 12.5 9.7 0.32 11.1 1.3 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) T3SS_needle_F PF09392.10 gi|313124980|ref|YP_004035244.1| - 0.14 12.3 2.1 10 6.4 0.3 2.1 2 0 0 2 2 2 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DUF883 PF05957.13 gi|313124980|ref|YP_004035244.1| - 0.32 11.6 7.3 32 5.2 6.8 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) T2SSF PF00482.23 gi|313124980|ref|YP_004035244.1| - 0.81 9.7 5.3 6.7 6.7 0.4 2.1 1 1 0 2 2 2 0 Type II secretion system (T2SS), protein F DinI PF06183.13 gi|313124981|ref|YP_004035245.1| - 0.045 14.1 0.1 0.14 12.5 0.1 1.9 2 0 0 2 2 2 0 DinI-like family HEAT_2 PF13646.6 gi|313124981|ref|YP_004035245.1| - 0.067 13.6 5.0 0.12 12.8 0.1 2.9 2 1 1 3 3 3 0 HEAT repeats HSCB_C PF07743.13 gi|313124981|ref|YP_004035245.1| - 0.15 12.6 0.2 0.15 12.6 0.2 1.9 2 1 0 2 2 2 0 HSCB C-terminal oligomerisation domain SpoIIM PF01944.17 gi|313124982|ref|YP_004035246.1| - 2.5e-26 92.6 8.2 2.5e-26 92.6 8.2 3.5 2 1 0 2 2 2 1 Stage II sporulation protein M Rhodanese PF00581.20 gi|313124983|ref|YP_004035247.1| - 3e-36 124.2 0.1 5.1e-18 65.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|313124984|ref|YP_004035248.1| - 1.1e-38 132.1 0.0 2.9e-19 69.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain AI-2E_transport PF01594.16 gi|313124985|ref|YP_004035249.1| - 2.3e-24 86.2 37.1 1.4e-23 83.6 37.1 2.1 1 1 0 1 1 1 1 AI-2E family transporter SBP_bac_6 PF13343.6 gi|313124986|ref|YP_004035250.1| - 3.5e-21 75.7 0.0 4.7e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|313124986|ref|YP_004035250.1| - 6.3e-19 68.9 0.1 8.3e-19 68.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313124986|ref|YP_004035250.1| - 1.7e-11 44.7 0.1 2.2e-11 44.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|313124986|ref|YP_004035250.1| - 1.3e-07 31.6 0.0 2.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|313124986|ref|YP_004035250.1| - 0.021 14.7 5.5 0.05 13.5 5.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|313124987|ref|YP_004035251.1| - 2.5e-28 99.1 47.5 1.8e-15 57.1 21.0 3.6 2 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.12 gi|313124988|ref|YP_004035252.1| - 7.6e-25 87.4 0.0 1.4e-24 86.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313124988|ref|YP_004035252.1| - 5.2e-21 75.2 0.0 9.3e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313124988|ref|YP_004035252.1| - 5.8e-18 65.1 0.0 8.1e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313124988|ref|YP_004035252.1| - 4.9e-13 49.2 0.0 6.4e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313124988|ref|YP_004035252.1| - 4.6e-12 46.5 0.0 7.2e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313124988|ref|YP_004035252.1| - 1.3e-11 44.3 0.0 1.7e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|313124988|ref|YP_004035252.1| - 1.5e-06 27.4 0.0 2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|313124988|ref|YP_004035252.1| - 0.00013 21.9 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|313124988|ref|YP_004035252.1| - 0.00032 20.3 0.0 0.0007 19.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain N6_N4_Mtase PF01555.18 gi|313124988|ref|YP_004035252.1| - 0.00074 19.3 0.0 0.17 11.5 0.0 2.2 2 0 0 2 2 2 2 DNA methylase CMAS PF02353.20 gi|313124988|ref|YP_004035252.1| - 0.00094 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|313124988|ref|YP_004035252.1| - 0.001 18.7 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|313124988|ref|YP_004035252.1| - 0.0014 18.0 0.0 0.002 17.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 gi|313124988|ref|YP_004035252.1| - 0.0019 18.1 0.0 0.0072 16.2 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 gi|313124988|ref|YP_004035252.1| - 0.0021 17.9 0.0 0.0037 17.1 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|313124988|ref|YP_004035252.1| - 0.084 12.5 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_29 PF03141.16 gi|313124988|ref|YP_004035252.1| - 0.11 11.0 0.0 0.19 10.2 0.0 1.4 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.7 gi|313124988|ref|YP_004035252.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|313124988|ref|YP_004035252.1| - 0.21 11.7 0.0 4.1 7.5 0.0 2.1 1 1 0 2 2 2 0 FtsJ-like methyltransferase DUF2391 PF09622.10 gi|313124989|ref|YP_004035253.1| - 1.7e-06 27.6 1.4 3.6e-06 26.5 1.4 1.6 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) ATPase PF06745.13 gi|313124990|ref|YP_004035254.1| - 0.0012 18.3 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 KaiC MatE PF01554.18 gi|313124993|ref|YP_004035257.1| - 2.8e-57 192.9 25.1 4.1e-30 104.6 11.3 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|313124993|ref|YP_004035257.1| - 5.9e-12 45.9 3.7 5.9e-12 45.9 3.7 4.8 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain CAAD PF14159.6 gi|313124993|ref|YP_004035257.1| - 0.058 13.2 0.3 0.18 11.6 0.3 1.9 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF2072 PF09845.9 gi|313124994|ref|YP_004035258.1| - 9.5e-31 106.8 16.6 6.9e-22 78.1 16.6 3.3 1 1 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|313124994|ref|YP_004035258.1| - 0.036 14.2 2.4 0.086 13.0 2.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|313124994|ref|YP_004035258.1| - 0.18 11.4 1.1 8.6 6.0 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|313124994|ref|YP_004035258.1| - 0.22 11.3 3.0 0.52 10.1 3.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|313124994|ref|YP_004035258.1| - 0.27 11.3 0.4 0.41 10.7 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1451 PF07295.11 gi|313124994|ref|YP_004035258.1| - 0.34 10.9 3.9 0.17 11.9 1.1 1.9 2 0 0 2 2 2 0 Zinc-ribbon containing domain DUF1610 PF07754.11 gi|313124994|ref|YP_004035258.1| - 1 9.4 4.7 4.4 7.4 4.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) DUF2073 PF09846.9 gi|313124995|ref|YP_004035259.1| - 3.1e-46 155.6 0.3 3.8e-46 155.3 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|313124996|ref|YP_004035260.1| - 6.2e-15 55.3 0.0 8.4e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|313124996|ref|YP_004035260.1| - 2.9e-11 43.3 0.1 0.00025 20.6 0.0 3.4 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|313124996|ref|YP_004035260.1| - 4.1e-07 29.6 0.0 0.00045 19.7 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|313124996|ref|YP_004035260.1| - 1.7e-05 24.4 0.4 0.00019 21.0 0.4 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|313124996|ref|YP_004035260.1| - 0.00012 22.0 0.0 0.32 10.9 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|313124996|ref|YP_004035260.1| - 0.00013 21.5 0.0 0.067 12.6 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|313124996|ref|YP_004035260.1| - 0.00013 21.4 0.0 0.00046 19.6 0.0 1.7 1 1 0 2 2 2 1 Septin AAA_18 PF13238.6 gi|313124996|ref|YP_004035260.1| - 0.00091 19.8 0.0 0.0041 17.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|313124996|ref|YP_004035260.1| - 0.0011 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|313124996|ref|YP_004035260.1| - 0.0011 19.1 0.0 0.0082 16.4 0.0 2.1 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|313124996|ref|YP_004035260.1| - 0.0022 18.3 0.2 0.075 13.3 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|313124996|ref|YP_004035260.1| - 0.004 16.9 0.0 0.0094 15.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313124996|ref|YP_004035260.1| - 0.0047 17.3 0.0 0.0088 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|313124996|ref|YP_004035260.1| - 0.0056 17.1 0.0 0.024 15.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.23 gi|313124996|ref|YP_004035260.1| - 0.0065 16.5 0.0 1.1 9.3 0.1 2.6 1 1 1 2 2 2 1 Dynamin family RNA_helicase PF00910.22 gi|313124996|ref|YP_004035260.1| - 0.0097 16.3 0.0 0.019 15.3 0.0 1.6 1 0 0 1 1 1 1 RNA helicase NB-ARC PF00931.22 gi|313124996|ref|YP_004035260.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|313124996|ref|YP_004035260.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|313124996|ref|YP_004035260.1| - 0.02 14.5 0.1 6 6.4 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|313124996|ref|YP_004035260.1| - 0.024 13.6 0.0 1.5 7.7 0.0 2.8 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|313124996|ref|YP_004035260.1| - 0.04 13.9 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|313124996|ref|YP_004035260.1| - 0.047 14.2 0.0 0.062 13.8 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|313124996|ref|YP_004035260.1| - 0.063 12.8 0.1 0.18 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|313124996|ref|YP_004035260.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ATP-synt_ab PF00006.25 gi|313124996|ref|YP_004035260.1| - 0.11 12.2 0.0 0.11 12.2 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Cdc6_C PF09079.11 gi|313124997|ref|YP_004035261.1| - 8.5e-24 83.3 0.0 2.3e-23 81.9 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|313124997|ref|YP_004035261.1| - 8.7e-11 42.5 0.2 3.1e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313124997|ref|YP_004035261.1| - 8.9e-09 35.7 0.2 4.3e-07 30.3 0.2 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|313124997|ref|YP_004035261.1| - 4.1e-08 33.7 0.3 1.5e-06 28.7 0.3 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|313124997|ref|YP_004035261.1| - 0.0013 18.0 0.0 0.0027 17.0 0.0 1.5 1 1 0 1 1 1 1 KAP family P-loop domain ATPase_2 PF01637.18 gi|313124997|ref|YP_004035261.1| - 0.002 18.1 0.1 0.0057 16.6 0.1 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|313124997|ref|YP_004035261.1| - 0.0022 17.4 0.2 0.015 14.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|313124997|ref|YP_004035261.1| - 0.0026 17.5 0.0 0.006 16.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|313124997|ref|YP_004035261.1| - 0.0028 16.8 0.0 0.0057 15.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|313124997|ref|YP_004035261.1| - 0.0039 17.0 0.1 0.01 15.6 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|313124997|ref|YP_004035261.1| - 0.0071 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.14 gi|313124997|ref|YP_004035261.1| - 0.0095 16.1 0.0 0.25 11.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.22 gi|313124997|ref|YP_004035261.1| - 0.017 14.3 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|313124997|ref|YP_004035261.1| - 0.031 14.8 0.0 0.074 13.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DNA_pol3_delta2 PF13177.6 gi|313124997|ref|YP_004035261.1| - 0.052 13.3 0.0 0.18 11.5 0.0 1.9 2 1 0 2 2 2 0 DNA polymerase III, delta subunit AAA_13 PF13166.6 gi|313124997|ref|YP_004035261.1| - 0.056 12.1 0.0 0.084 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|313124997|ref|YP_004035261.1| - 0.056 12.6 0.0 0.13 11.4 0.0 1.6 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|313124997|ref|YP_004035261.1| - 0.059 12.9 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|313124997|ref|YP_004035261.1| - 0.072 12.7 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313124997|ref|YP_004035261.1| - 0.072 13.6 0.0 0.17 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|313124997|ref|YP_004035261.1| - 0.085 12.2 0.2 0.36 10.1 0.2 2.1 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_assoc_2 PF16193.5 gi|313124997|ref|YP_004035261.1| - 0.099 13.0 0.3 0.32 11.3 0.3 1.8 1 0 0 1 1 1 0 AAA C-terminal domain MutS_III PF05192.18 gi|313124997|ref|YP_004035261.1| - 0.14 12.3 1.4 0.37 11.0 1.4 1.8 1 1 0 1 1 1 0 MutS domain III TsaE PF02367.17 gi|313124997|ref|YP_004035261.1| - 0.15 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|313124997|ref|YP_004035261.1| - 0.18 12.2 0.0 0.43 11.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|313124997|ref|YP_004035261.1| - 0.18 11.5 0.7 0.5 10.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|313124997|ref|YP_004035261.1| - 0.53 10.0 3.7 7.7 6.2 2.1 2.6 2 1 0 2 2 1 0 DEAD/DEAH box helicase Peptidase_S24 PF00717.23 gi|313124998|ref|YP_004035262.1| - 0.0071 16.3 0.1 0.014 15.3 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like O_Spanin_T7 PF17531.2 gi|313124998|ref|YP_004035262.1| - 0.7 10.0 4.2 13 6.0 0.4 2.6 2 0 0 2 2 2 0 outer-membrane spanin sub-unit DNA_pol_E_B PF04042.16 gi|313124999|ref|YP_004035263.1| - 3.2e-14 52.8 0.0 5.3e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|313124999|ref|YP_004035263.1| - 1.3e-12 48.2 3.1 3.5e-12 46.8 3.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313124999|ref|YP_004035263.1| - 1.5e-11 45.2 0.9 2.8e-11 44.3 0.9 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase AA_kinase PF00696.28 gi|313125001|ref|YP_004035265.1| - 3.7e-46 157.7 4.4 5.5e-46 157.1 4.4 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|313125001|ref|YP_004035265.1| - 6.6e-17 61.1 0.2 4.2e-08 32.9 0.1 2.9 3 0 0 3 3 3 2 ACT domain ACT PF01842.25 gi|313125001|ref|YP_004035265.1| - 1.2e-13 50.5 0.3 2.8e-05 23.8 0.1 3.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|313125001|ref|YP_004035265.1| - 5.5e-07 30.1 0.3 0.067 13.8 0.0 2.9 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|313125001|ref|YP_004035265.1| - 0.00032 20.6 0.2 1.4 8.9 0.0 2.9 2 0 0 2 2 2 2 ACT domain LytR_C PF13399.6 gi|313125001|ref|YP_004035265.1| - 0.18 12.8 1.7 1.3 10.0 0.1 2.8 3 1 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator 4HBT PF03061.22 gi|313125002|ref|YP_004035266.1| - 2.4e-16 59.8 0.3 3.6e-16 59.3 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily tRNA_anti-codon PF01336.25 gi|313125002|ref|YP_004035266.1| - 0.015 15.2 0.0 0.034 14.1 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain 4HBT_2 PF13279.6 gi|313125002|ref|YP_004035266.1| - 0.017 15.6 0.0 0.021 15.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Beta_elim_lyase PF01212.21 gi|313125003|ref|YP_004035267.1| - 1.5e-71 241.1 0.0 2.3e-71 240.5 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase HrpB4 PF09502.10 gi|313125003|ref|YP_004035267.1| - 0.12 12.2 0.5 0.36 10.6 0.0 2.0 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB4) DUF2891 PF11199.8 gi|313125004|ref|YP_004035268.1| - 2.1e-123 411.4 4.6 2.4e-123 411.2 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2891) Metallophos_2 PF12850.7 gi|313125005|ref|YP_004035269.1| - 1.8e-31 109.6 0.4 2.2e-31 109.3 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313125005|ref|YP_004035269.1| - 7.4e-13 49.5 1.0 9.2e-12 45.9 1.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase IMP_cyclohyd PF07826.11 gi|313125006|ref|YP_004035270.1| - 5.7e-66 221.8 0.0 6.8e-66 221.5 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.10 gi|313125007|ref|YP_004035271.1| - 5.5e-10 39.6 0.0 7e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DEAD PF00270.29 gi|313125008|ref|YP_004035272.1| - 3.9e-21 75.6 0.0 7.8e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|313125008|ref|YP_004035272.1| - 2.9e-07 31.0 0.2 1.6e-06 28.6 0.2 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|313125008|ref|YP_004035272.1| - 6.1e-06 26.6 0.0 0.00012 22.4 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|313125008|ref|YP_004035272.1| - 8.5e-05 22.3 0.0 0.0004 20.2 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Fer4_15 PF13459.6 gi|313125009|ref|YP_004035273.1| - 6.3e-21 74.9 3.3 7.5e-21 74.6 3.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|313125009|ref|YP_004035273.1| - 6.5e-05 23.4 2.1 0.0002 21.8 2.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|313125009|ref|YP_004035273.1| - 0.025 14.4 1.8 0.47 10.4 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|313125009|ref|YP_004035273.1| - 0.082 13.0 2.2 3 8.1 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain bPH_6 PF10756.9 gi|313125010|ref|YP_004035274.1| - 0.022 14.9 0.2 0.036 14.2 0.2 1.4 1 1 0 1 1 1 0 Bacterial PH domain ERCC4 PF02732.15 gi|313125011|ref|YP_004035275.1| - 1.3e-24 87.1 0.0 3.2e-24 85.9 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|313125011|ref|YP_004035275.1| - 7.9e-23 80.9 0.0 3.6e-22 78.8 0.0 2.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|313125011|ref|YP_004035275.1| - 6.6e-16 58.6 0.0 2.4e-15 56.8 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|313125011|ref|YP_004035275.1| - 1e-13 51.7 0.0 2.2e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|313125011|ref|YP_004035275.1| - 2e-10 40.6 0.5 1.4e-09 37.9 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|313125011|ref|YP_004035275.1| - 3.4e-10 40.4 0.5 1.7e-09 38.1 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|313125011|ref|YP_004035275.1| - 7.9e-08 31.8 0.4 2.7e-05 23.8 0.1 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.6 gi|313125011|ref|YP_004035275.1| - 0.018 15.2 0.1 0.063 13.4 0.1 1.9 1 0 0 1 1 1 0 Helicase C-terminal domain 5_3_exonuc PF01367.20 gi|313125011|ref|YP_004035275.1| - 0.021 15.4 0.0 0.092 13.4 0.0 2.1 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold DUF4407 PF14362.6 gi|313125011|ref|YP_004035275.1| - 4.9 6.4 11.0 5.6 6.2 3.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Usp PF00582.26 gi|313125013|ref|YP_004035277.1| - 2e-22 80.2 1.8 3.2e-22 79.5 1.8 1.3 1 1 0 1 1 1 1 Universal stress protein family Auto_anti-p27 PF06677.12 gi|313125014|ref|YP_004035278.1| - 1.1e-14 54.3 0.6 1.5e-14 53.8 0.6 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|313125014|ref|YP_004035278.1| - 0.00066 19.7 2.8 0.0012 18.8 2.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.14 gi|313125014|ref|YP_004035278.1| - 0.029 14.7 1.4 1.1 9.6 1.4 2.5 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.10 gi|313125014|ref|YP_004035278.1| - 0.038 13.7 1.3 0.077 12.7 1.3 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|313125014|ref|YP_004035278.1| - 0.04 14.7 1.5 0.075 13.8 1.5 1.4 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|313125014|ref|YP_004035278.1| - 0.048 13.7 0.9 0.095 12.7 0.9 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|313125014|ref|YP_004035278.1| - 0.064 13.2 1.3 0.12 12.4 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS91 PF14319.6 gi|313125014|ref|YP_004035278.1| - 0.079 13.0 1.3 0.17 11.9 1.3 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.6 gi|313125014|ref|YP_004035278.1| - 0.62 9.6 5.0 2.6 7.6 5.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|313125014|ref|YP_004035278.1| - 0.67 9.9 3.5 0.84 9.6 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|313125014|ref|YP_004035278.1| - 1.8 8.4 5.6 5.9 6.7 5.5 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Ldh_1_N PF00056.23 gi|313125015|ref|YP_004035279.1| - 5.5e-39 133.5 0.3 8.2e-39 132.9 0.3 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|313125015|ref|YP_004035279.1| - 6.8e-29 100.9 0.0 1.3e-28 100.1 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPBP PF02517.16 gi|313125016|ref|YP_004035280.1| - 1e-13 51.5 8.2 1e-13 51.5 8.2 3.1 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF3525 PF12039.8 gi|313125016|ref|YP_004035280.1| - 0.067 11.9 0.3 0.11 11.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) TAT_signal PF10518.9 gi|313125017|ref|YP_004035281.1| - 0.0024 17.7 6.6 0.0024 17.7 6.6 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence NPCBM_assoc PF10633.9 gi|313125019|ref|YP_004035283.1| - 1.2e-07 31.9 10.3 0.0014 18.8 0.0 4.6 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|313125019|ref|YP_004035283.1| - 5.3e-06 26.7 4.4 0.038 14.3 0.1 4.6 3 2 0 3 3 3 2 Domain of unknown function DUF11 FixG_C PF11614.8 gi|313125019|ref|YP_004035283.1| - 6.7e-05 23.1 0.8 1.7 8.8 0.0 3.9 3 1 1 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4832 PF16116.5 gi|313125019|ref|YP_004035283.1| - 0.00018 21.4 0.0 0.23 11.3 0.0 2.8 2 1 0 2 2 2 2 Domain of unknown function (DUF4832) N_BRCA1_IG PF16158.5 gi|313125019|ref|YP_004035283.1| - 0.00032 21.4 0.3 0.093 13.5 0.0 3.7 3 1 1 4 4 4 1 Ig-like domain from next to BRCA1 gene E1_DerP2_DerF2 PF02221.15 gi|313125019|ref|YP_004035283.1| - 0.0027 18.1 0.1 1.6 9.1 0.0 2.7 2 0 0 2 2 2 2 ML domain A2M PF00207.22 gi|313125019|ref|YP_004035283.1| - 0.0036 17.1 0.2 12 5.9 0.0 4.0 4 0 0 4 4 4 1 Alpha-2-macroglobulin family DUF4625 PF15418.6 gi|313125019|ref|YP_004035283.1| - 0.0037 17.5 0.1 2.8 8.2 0.0 2.8 2 1 0 2 2 2 2 Domain of unknown function (DUF4625) DUF916 PF06030.12 gi|313125019|ref|YP_004035283.1| - 0.014 15.4 0.1 20 5.3 0.0 4.0 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF916) ASH PF15780.5 gi|313125019|ref|YP_004035283.1| - 0.036 14.3 0.7 23 5.3 0.2 3.3 2 1 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF824 PF05688.11 gi|313125019|ref|YP_004035283.1| - 0.054 13.3 0.4 0.3 10.9 0.0 2.3 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) fn3_5 PF06280.12 gi|313125019|ref|YP_004035283.1| - 0.081 13.6 4.7 4.2 8.1 0.0 3.8 2 2 0 3 3 3 0 Fn3-like domain DUF1616 PF07760.11 gi|313125019|ref|YP_004035283.1| - 0.94 8.8 6.1 3.3 7.0 1.6 2.9 2 2 2 4 4 4 0 Protein of unknown function (DUF1616) Cohesin PF00963.18 gi|313125019|ref|YP_004035283.1| - 5.2 7.3 7.7 21 5.3 0.0 4.1 4 2 0 4 4 4 0 Cohesin domain UvrC_HhH_N PF08459.11 gi|313125020|ref|YP_004035284.1| - 1.3e-40 138.8 0.0 2.4e-40 138.0 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|313125020|ref|YP_004035284.1| - 3.1e-12 46.9 0.0 7.6e-12 45.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|313125020|ref|YP_004035284.1| - 6.8e-11 41.5 0.7 3e-06 26.8 0.1 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|313125020|ref|YP_004035284.1| - 8.2e-10 38.6 0.0 2.6e-09 37.0 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif UVR PF02151.19 gi|313125020|ref|YP_004035284.1| - 4.5e-08 32.6 2.0 1.3e-07 31.1 2.0 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif 5_3_exonuc PF01367.20 gi|313125020|ref|YP_004035284.1| - 8.2e-06 26.3 0.1 0.0082 16.7 0.0 2.8 2 1 1 3 3 3 2 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|313125020|ref|YP_004035284.1| - 7.8e-05 22.8 0.0 0.1 13.0 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif GIY-YIG PF01541.24 gi|313125020|ref|YP_004035284.1| - 9.4e-05 22.6 0.0 0.0002 21.5 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_8 PF14716.6 gi|313125020|ref|YP_004035284.1| - 0.0021 18.4 0.3 1.3 9.4 0.0 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain PELOTA_1 PF15608.6 gi|313125020|ref|YP_004035284.1| - 0.15 11.9 0.5 0.65 9.9 0.5 2.1 1 1 0 1 1 1 0 PELOTA RNA binding domain HTH_20 PF12840.7 gi|313125021|ref|YP_004035285.1| - 0.021 14.9 2.5 3.8 7.7 1.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF505 PF04458.12 gi|313125021|ref|YP_004035285.1| - 0.19 10.1 0.0 0.19 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Y1_Tnp PF01797.16 gi|313125023|ref|YP_004035287.1| - 3.9e-37 127.1 0.0 4.3e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like IQ_SEC7_PH PF16453.5 gi|313125023|ref|YP_004035287.1| - 0.059 13.3 0.0 0.087 12.8 0.0 1.4 1 1 0 1 1 1 0 PH domain OrfB_IS605 PF01385.19 gi|313125024|ref|YP_004035288.1| - 8e-23 80.9 0.1 1.8e-22 79.8 0.1 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313125024|ref|YP_004035288.1| - 8.5e-21 73.7 0.2 8.5e-21 73.7 0.2 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|313125024|ref|YP_004035288.1| - 4.7e-07 29.2 1.1 9.2e-07 28.3 1.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Clusterin PF01093.17 gi|313125024|ref|YP_004035288.1| - 0.085 11.9 0.1 0.15 11.1 0.1 1.4 1 0 0 1 1 1 0 Clusterin Clr5 PF14420.6 gi|313125024|ref|YP_004035288.1| - 0.11 12.7 0.1 0.28 11.4 0.1 1.7 1 0 0 1 1 1 0 Clr5 domain DZR PF12773.7 gi|313125024|ref|YP_004035288.1| - 0.19 11.8 1.3 0.46 10.5 1.3 1.7 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|313125024|ref|YP_004035288.1| - 3.4 7.9 9.7 1.4 9.1 0.9 2.9 2 1 1 3 3 3 0 Zinc ribbon domain Ribosomal_L37e PF01907.19 gi|313125024|ref|YP_004035288.1| - 9 6.5 9.2 11 6.2 2.6 3.2 2 1 1 3 3 3 0 Ribosomal protein L37e ABC_tran PF00005.27 gi|313125025|ref|YP_004035289.1| - 5.5e-29 101.4 0.0 8.7e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125025|ref|YP_004035289.1| - 3.1e-11 43.7 0.0 1e-07 32.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313125025|ref|YP_004035289.1| - 1.3e-07 32.2 0.0 2.9e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|313125025|ref|YP_004035289.1| - 0.0051 16.6 4.4 1.2 8.8 0.0 2.8 2 1 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|313125025|ref|YP_004035289.1| - 0.015 14.8 0.0 0.21 11.1 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|313125025|ref|YP_004035289.1| - 0.021 15.3 0.1 0.039 14.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|313125025|ref|YP_004035289.1| - 0.027 14.4 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|313125025|ref|YP_004035289.1| - 0.054 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DAHP_snth_FXD PF18152.1 gi|313125025|ref|YP_004035289.1| - 3.9 7.4 5.3 4.8 7.1 0.1 3.3 4 1 1 5 5 5 0 DAHP synthase ferredoxin-like domain ABC2_membrane_2 PF12679.7 gi|313125026|ref|YP_004035290.1| - 2.1e-67 227.4 12.8 2.4e-67 227.3 12.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|313125026|ref|YP_004035290.1| - 2.9e-11 43.2 9.9 2.9e-11 43.2 9.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|313125026|ref|YP_004035290.1| - 1.2e-08 34.4 14.1 1.2e-08 34.4 14.1 1.9 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313125026|ref|YP_004035290.1| - 2.5e-07 30.8 6.7 2.5e-07 30.8 6.7 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313125026|ref|YP_004035290.1| - 6.9e-07 29.0 5.4 6.9e-07 29.0 5.4 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein YqhR PF11085.8 gi|313125026|ref|YP_004035290.1| - 0.79 9.6 8.0 0.038 13.9 1.1 2.3 2 1 0 2 2 2 0 Conserved membrane protein YqhR DNA_ligase_aden PF01653.18 gi|313125027|ref|YP_004035291.1| - 4.6e-106 354.5 0.0 7e-106 353.9 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|313125027|ref|YP_004035291.1| - 1.9e-29 101.3 3.5 4.4e-29 100.2 3.5 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|313125027|ref|YP_004035291.1| - 2.7e-24 85.0 0.0 3e-23 81.7 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|313125027|ref|YP_004035291.1| - 1.8e-16 60.5 0.2 2.4e-08 34.4 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|313125027|ref|YP_004035291.1| - 9.9e-11 40.9 0.5 1.1e-06 28.2 0.0 3.8 3 0 0 3 3 3 2 Helix-hairpin-helix motif BRCT PF00533.26 gi|313125027|ref|YP_004035291.1| - 1e-09 38.6 0.0 2e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 gi|313125027|ref|YP_004035291.1| - 0.00015 21.7 4.5 0.00049 20.1 4.5 2.0 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.20 gi|313125027|ref|YP_004035291.1| - 0.0078 16.8 0.0 0.068 13.8 0.0 2.4 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|313125027|ref|YP_004035291.1| - 0.017 15.5 0.1 0.48 10.8 0.0 3.3 2 1 1 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|313125027|ref|YP_004035291.1| - 0.031 14.5 0.0 0.62 10.4 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif ThiP_synth PF10120.9 gi|313125027|ref|YP_004035291.1| - 0.1 12.2 1.8 0.62 9.7 0.0 2.7 3 0 0 3 3 3 0 Thiamine-phosphate synthase HEAT_2 PF13646.6 gi|313125028|ref|YP_004035292.1| - 3.8e-57 190.6 44.1 2.9e-15 56.4 7.7 7.3 2 2 5 7 7 7 7 HEAT repeats HEAT PF02985.22 gi|313125028|ref|YP_004035292.1| - 3.4e-21 73.5 31.6 0.0015 18.6 0.1 12.0 12 0 0 12 12 12 6 HEAT repeat HEAT_PBS PF03130.16 gi|313125028|ref|YP_004035292.1| - 4.8e-17 60.8 33.1 0.00034 21.0 0.2 9.8 10 0 0 10 10 8 5 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|313125028|ref|YP_004035292.1| - 9.4e-14 51.6 37.1 0.011 16.2 0.5 10.6 8 4 3 11 11 11 5 HEAT-like repeat Arm PF00514.23 gi|313125028|ref|YP_004035292.1| - 1.2e-07 31.5 9.5 0.031 14.3 0.1 7.6 8 1 1 9 9 9 1 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|313125028|ref|YP_004035292.1| - 2e-06 27.9 2.7 0.42 10.6 0.1 5.0 5 2 0 5 5 5 2 non-SMC mitotic condensation complex subunit 1 ERAP1_C PF11838.8 gi|313125028|ref|YP_004035292.1| - 0.0015 18.2 4.3 1.3 8.5 0.1 3.5 2 2 0 2 2 2 2 ERAP1-like C-terminal domain Adaptin_N PF01602.20 gi|313125028|ref|YP_004035292.1| - 0.052 12.1 0.4 13 4.2 0.0 3.1 3 1 0 3 3 3 0 Adaptin N terminal region IFRD PF05004.13 gi|313125028|ref|YP_004035292.1| - 0.089 11.9 0.5 2.8 7.0 0.0 3.4 3 1 1 4 4 4 0 Interferon-related developmental regulator (IFRD) Unstab_antitox PF09720.10 gi|313125028|ref|YP_004035292.1| - 0.089 12.9 1.3 3 8.0 0.1 3.1 2 0 0 2 2 2 0 Putative addiction module component Tti2 PF10521.9 gi|313125028|ref|YP_004035292.1| - 0.16 11.5 0.0 7.5 6.0 0.0 2.8 3 0 0 3 3 3 0 Tti2 family RasGEF_N_2 PF14663.6 gi|313125028|ref|YP_004035292.1| - 0.18 12.2 0.0 29 5.1 0.0 3.6 4 1 1 5 5 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Cys_Met_Meta_PP PF01053.20 gi|313125029|ref|YP_004035293.1| - 2.5e-128 427.9 0.0 2.9e-128 427.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|313125029|ref|YP_004035293.1| - 8.3e-05 21.7 0.1 0.00014 21.0 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|313125029|ref|YP_004035293.1| - 0.0081 15.5 2.1 0.014 14.7 1.1 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|313125029|ref|YP_004035293.1| - 0.024 13.9 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Abhydrolase_1 PF00561.20 gi|313125030|ref|YP_004035294.1| - 7.8e-32 110.9 0.1 9.2e-32 110.7 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313125030|ref|YP_004035294.1| - 0.00075 20.2 13.9 0.0015 19.2 13.7 1.6 1 1 1 2 2 2 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313125030|ref|YP_004035294.1| - 0.0089 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|313125030|ref|YP_004035294.1| - 0.022 14.9 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.20 gi|313125030|ref|YP_004035294.1| - 0.026 14.2 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Putative esterase Cys_Met_Meta_PP PF01053.20 gi|313125032|ref|YP_004035296.1| - 5.1e-135 449.9 0.0 5.8e-135 449.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|313125032|ref|YP_004035296.1| - 2.5e-08 33.5 0.0 3.9e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|313125032|ref|YP_004035296.1| - 9.6e-06 25.1 0.2 3.1e-05 23.5 0.2 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|313125032|ref|YP_004035296.1| - 0.0066 15.5 0.0 0.013 14.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V PHO4 PF01384.20 gi|313125033|ref|YP_004035297.1| - 7.3e-38 130.5 34.1 2.3e-37 128.8 34.1 1.7 1 1 0 1 1 1 1 Phosphate transporter family DUF4713 PF15831.5 gi|313125033|ref|YP_004035297.1| - 0.64 10.5 2.8 0.56 10.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4713) PHO4 PF01384.20 gi|313125034|ref|YP_004035298.1| - 6e-43 147.2 21.7 1.3e-42 146.1 21.3 1.8 1 1 0 1 1 1 1 Phosphate transporter family Fer2 PF00111.27 gi|313125035|ref|YP_004035299.1| - 7.8e-15 54.6 0.3 1.1e-14 54.1 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|313125035|ref|YP_004035299.1| - 0.021 14.8 0.2 0.045 13.8 0.2 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Arc_PepC_II PF06847.11 gi|313125036|ref|YP_004035300.1| - 1.4e-11 44.8 0.4 8.4e-10 39.0 0.4 2.3 1 1 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|313125036|ref|YP_004035300.1| - 1.4e-09 38.3 7.1 3.1e-09 37.2 7.1 1.6 1 0 0 1 1 1 1 Type IV leader peptidase family CbiN PF02553.15 gi|313125036|ref|YP_004035300.1| - 0.12 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Cobalt transport protein component CbiN Oxidored_q2 PF00420.24 gi|313125037|ref|YP_004035301.1| - 0.015 14.9 2.2 4.4 7.0 3.0 2.2 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Phage_Coat_Gp8 PF05371.12 gi|313125037|ref|YP_004035301.1| - 0.23 11.2 1.0 0.51 10.1 1.0 1.6 1 0 0 1 1 1 0 Phage major coat protein, Gp8 DUF4229 PF14012.6 gi|313125037|ref|YP_004035301.1| - 0.38 10.9 11.0 0.072 13.2 6.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) DUF4175 PF13779.6 gi|313125037|ref|YP_004035301.1| - 0.88 7.4 1.9 1 7.1 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) PRA-CH PF01502.18 gi|313125038|ref|YP_004035302.1| - 2.1e-35 120.4 0.1 3.5e-35 119.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase VHL_C PF17211.3 gi|313125039|ref|YP_004035303.1| - 0.044 13.8 0.3 0.19 11.8 0.3 2.1 1 0 0 1 1 1 0 VHL box domain SOAR PF16533.5 gi|313125039|ref|YP_004035303.1| - 0.082 12.9 3.9 0.2 11.7 0.3 3.0 2 1 1 3 3 3 0 STIM1 Orai1-activating region Sel_put PF04328.13 gi|313125039|ref|YP_004035303.1| - 0.55 10.3 2.7 7.3 6.7 0.0 3.7 4 0 0 4 4 4 0 Selenoprotein, putative Syntaxin-6_N PF09177.11 gi|313125039|ref|YP_004035303.1| - 6.4 7.4 8.7 2.6 8.7 1.4 3.2 2 2 0 2 2 2 0 Syntaxin 6, N-terminal DUF3185 PF11381.8 gi|313125040|ref|YP_004035304.1| - 0.017 15.1 1.6 0.14 12.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) Acetyltransf_1 PF00583.25 gi|313125041|ref|YP_004035305.1| - 2.1e-14 53.8 0.0 2.5e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313125041|ref|YP_004035305.1| - 7.1e-09 35.7 0.0 1.2e-08 35.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313125041|ref|YP_004035305.1| - 1.7e-08 34.7 0.0 2.6e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313125041|ref|YP_004035305.1| - 3.1e-05 23.9 0.0 4.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|313125041|ref|YP_004035305.1| - 0.014 16.1 0.0 0.017 15.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313125041|ref|YP_004035305.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PGM_PMM_I PF02878.16 gi|313125042|ref|YP_004035306.1| - 9.6e-34 116.1 0.0 1.6e-33 115.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|313125042|ref|YP_004035306.1| - 4.7e-28 97.8 0.2 1e-27 96.7 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|313125042|ref|YP_004035306.1| - 3.7e-16 59.1 0.5 2.1e-15 56.6 0.5 2.3 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|313125042|ref|YP_004035306.1| - 3.3e-13 49.8 0.0 7.1e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Melibiase_C PF17801.1 gi|313125042|ref|YP_004035306.1| - 0.0013 18.8 0.0 0.003 17.6 0.0 1.5 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain CinA_KH PF18146.1 gi|313125042|ref|YP_004035306.1| - 0.036 14.2 1.1 1.8 8.8 0.2 2.8 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Smoothelin PF12510.8 gi|313125042|ref|YP_004035306.1| - 0.39 10.8 2.3 0.68 10.0 0.9 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein His_biosynth PF00977.21 gi|313125043|ref|YP_004035307.1| - 2.8e-75 252.7 6.4 3.1e-75 252.5 6.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|313125043|ref|YP_004035307.1| - 1.7e-11 43.8 0.4 2.4e-05 23.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|313125043|ref|YP_004035307.1| - 3.3e-10 39.7 2.0 1.4e-05 24.4 0.5 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|313125043|ref|YP_004035307.1| - 8e-10 38.4 7.9 4.7e-05 22.8 0.4 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|313125043|ref|YP_004035307.1| - 3.3e-09 36.6 15.4 9.3e-07 28.5 6.1 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.17 gi|313125043|ref|YP_004035307.1| - 1.8e-05 24.1 4.6 0.00074 18.9 1.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase IGPS PF00218.21 gi|313125043|ref|YP_004035307.1| - 2.3e-05 23.7 1.5 0.0033 16.6 0.1 2.9 2 2 1 3 3 3 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|313125043|ref|YP_004035307.1| - 0.00013 21.5 3.7 0.15 11.5 0.4 2.2 2 0 0 2 2 2 2 PcrB family G3P_antiterm PF04309.12 gi|313125043|ref|YP_004035307.1| - 0.00027 20.4 2.5 0.011 15.2 0.4 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|313125043|ref|YP_004035307.1| - 0.00053 18.9 4.3 0.1 11.4 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IMPDH PF00478.25 gi|313125043|ref|YP_004035307.1| - 0.0051 15.9 6.6 0.11 11.5 1.5 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|313125043|ref|YP_004035307.1| - 0.0059 15.8 1.6 0.76 8.9 0.2 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|313125043|ref|YP_004035307.1| - 0.009 15.1 10.6 0.25 10.3 2.2 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase DUF561 PF04481.12 gi|313125043|ref|YP_004035307.1| - 0.087 12.0 0.1 0.22 10.7 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) BtpA PF03437.15 gi|313125043|ref|YP_004035307.1| - 0.24 10.8 7.1 2.8 7.3 1.2 2.7 1 1 2 3 3 3 0 BtpA family PA PF02225.22 gi|313125043|ref|YP_004035307.1| - 1.5 8.9 6.5 9.8 6.3 1.4 2.5 1 1 1 2 2 2 0 PA domain Ribul_P_3_epim PF00834.19 gi|313125043|ref|YP_004035307.1| - 1.6 8.1 5.1 0.99 8.8 0.5 2.4 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family IGPD PF00475.18 gi|313125044|ref|YP_004035308.1| - 2.5e-61 206.2 1.7 2.5e-61 206.2 1.7 1.3 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Lar_restr_allev PF14354.6 gi|313125045|ref|YP_004035309.1| - 0.03 14.7 0.0 0.08 13.3 0.0 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar TSP9 PF11493.8 gi|313125045|ref|YP_004035309.1| - 0.27 11.9 0.2 0.27 11.9 0.2 2.3 2 1 0 2 2 2 0 Thylakoid soluble phosphoprotein TSP9 DUF966 PF06136.13 gi|313125045|ref|YP_004035309.1| - 1.4 8.6 10.9 1.8 8.2 10.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF966) ORC6 PF05460.13 gi|313125045|ref|YP_004035309.1| - 2.2 7.5 9.9 3 7.0 9.9 1.1 1 0 0 1 1 1 0 Origin recognition complex subunit 6 (ORC6) Hamartin PF04388.12 gi|313125045|ref|YP_004035309.1| - 3.5 6.2 6.3 4.4 5.8 6.3 1.1 1 0 0 1 1 1 0 Hamartin protein Mitofilin PF09731.9 gi|313125045|ref|YP_004035309.1| - 5.3 5.7 13.0 6.6 5.4 13.0 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein ACT_7 PF13840.6 gi|313125046|ref|YP_004035310.1| - 3.5e-05 23.5 0.0 0.00011 21.9 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|313125046|ref|YP_004035310.1| - 3.8e-05 23.4 0.2 0.0002 21.1 0.1 2.4 2 1 0 2 2 2 1 ACT domain UPF0029 PF01205.19 gi|313125047|ref|YP_004035311.1| - 1.4e-27 96.0 0.0 1.9e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|313125047|ref|YP_004035311.1| - 1.1e-10 41.2 0.5 3e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|313125047|ref|YP_004035311.1| - 0.0037 17.3 0.0 0.0085 16.1 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus DAO PF01266.24 gi|313125048|ref|YP_004035312.1| - 4e-58 197.7 6.9 4.5e-58 197.5 6.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|313125048|ref|YP_004035312.1| - 1.1e-07 31.2 0.6 0.0062 15.7 0.7 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|313125048|ref|YP_004035312.1| - 2.7e-06 26.9 2.6 2.9e-05 23.5 2.6 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313125048|ref|YP_004035312.1| - 4.2e-06 26.2 0.3 0.0027 17.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313125048|ref|YP_004035312.1| - 4.4e-06 26.0 4.7 1.3e-05 24.5 4.7 1.7 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313125048|ref|YP_004035312.1| - 4e-05 23.7 1.0 9.2e-05 22.6 1.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|313125048|ref|YP_004035312.1| - 0.00018 20.5 0.3 0.054 12.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|313125048|ref|YP_004035312.1| - 0.00044 19.4 0.1 0.22 10.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein ApbA PF02558.16 gi|313125048|ref|YP_004035312.1| - 0.002 17.8 0.1 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|313125048|ref|YP_004035312.1| - 0.0028 17.6 1.1 0.0053 16.7 0.4 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|313125048|ref|YP_004035312.1| - 0.0039 17.2 2.5 2 8.4 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|313125048|ref|YP_004035312.1| - 0.0081 16.7 0.9 0.0081 16.7 0.9 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|313125048|ref|YP_004035312.1| - 0.015 14.7 0.9 0.027 13.8 0.5 1.5 1 1 0 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313125048|ref|YP_004035312.1| - 0.017 13.9 0.5 1.3 7.7 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|313125048|ref|YP_004035312.1| - 0.038 13.2 0.0 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|313125048|ref|YP_004035312.1| - 0.09 13.0 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|313125048|ref|YP_004035312.1| - 0.15 12.5 0.0 0.27 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Peptidase_S9 PF00326.21 gi|313125049|ref|YP_004035313.1| - 5.1e-57 192.8 1.1 7.7e-57 192.2 1.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|313125049|ref|YP_004035313.1| - 1.8e-15 56.4 0.7 2.2e-06 27.4 0.1 4.7 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|313125049|ref|YP_004035313.1| - 3.8e-06 25.9 0.1 0.21 10.3 0.0 4.5 3 1 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.18 gi|313125049|ref|YP_004035313.1| - 3.5e-05 23.5 0.0 6.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|313125049|ref|YP_004035313.1| - 0.00015 21.5 0.6 0.028 14.1 0.7 2.3 2 0 0 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.12 gi|313125049|ref|YP_004035313.1| - 0.0014 17.4 0.7 0.081 11.6 0.7 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|313125049|ref|YP_004035313.1| - 0.0026 17.0 0.8 0.71 9.1 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF2920 PF11144.8 gi|313125049|ref|YP_004035313.1| - 0.019 14.1 0.0 0.47 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Abhydrolase_2 PF02230.16 gi|313125049|ref|YP_004035313.1| - 0.049 13.4 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Neurensin PF14927.6 gi|313125050|ref|YP_004035314.1| - 0.00085 19.0 0.7 0.0017 18.0 0.7 1.5 1 1 0 1 1 1 1 Neurensin Trp_oprn_chp PF09534.10 gi|313125050|ref|YP_004035314.1| - 0.0068 16.2 1.2 0.012 15.4 1.2 1.5 1 1 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) SdpI PF13630.6 gi|313125050|ref|YP_004035314.1| - 0.087 13.0 0.7 0.36 11.0 0.0 1.9 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF2157 PF09925.9 gi|313125050|ref|YP_004035314.1| - 0.12 12.2 3.2 0.12 12.1 0.1 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) DUF2976 PF11190.8 gi|313125050|ref|YP_004035314.1| - 0.99 9.2 5.1 0.91 9.4 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) DUF3040 PF11239.8 gi|313125050|ref|YP_004035314.1| - 1.2 9.5 7.6 4.9 7.5 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF1201 PF06716.11 gi|313125051|ref|YP_004035315.1| - 0.33 11.0 1.8 15 5.7 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1201) ABC2_membrane_3 PF12698.7 gi|313125051|ref|YP_004035315.1| - 3.3 6.7 14.6 4.3 6.4 14.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Glyco_hydro_26 PF02156.15 gi|313125052|ref|YP_004035316.1| - 2.1e-06 27.4 5.1 2.3e-06 27.3 1.8 2.2 2 1 1 3 3 3 1 Glycosyl hydrolase family 26 TackOD1 PF18551.1 gi|313125053|ref|YP_004035317.1| - 1.2e-11 44.6 1.1 1.5e-11 44.3 1.1 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|313125053|ref|YP_004035317.1| - 9.5e-07 28.8 2.8 0.058 13.5 0.1 3.2 3 0 0 3 3 3 2 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|313125053|ref|YP_004035317.1| - 0.00011 22.4 9.5 0.013 15.7 0.0 3.3 2 1 1 3 3 3 1 zinc-ribbon Zn_Tnp_IS1 PF03811.13 gi|313125053|ref|YP_004035317.1| - 0.0026 17.5 2.7 6 6.7 0.1 3.2 3 0 0 3 3 3 1 InsA N-terminal domain DUF3797 PF12677.7 gi|313125053|ref|YP_004035317.1| - 0.0059 16.5 0.8 3.2 7.7 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3797) zf-C2H2_4 PF13894.6 gi|313125053|ref|YP_004035317.1| - 0.007 17.1 1.6 7.4 7.7 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.12 gi|313125053|ref|YP_004035317.1| - 0.018 15.0 5.5 0.099 12.6 1.5 2.4 1 1 1 2 2 2 0 zinc-ribbons zf-C2H2 PF00096.26 gi|313125053|ref|YP_004035317.1| - 0.019 15.4 4.6 7 7.3 0.2 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf_C2H2_10 PF18414.1 gi|313125053|ref|YP_004035317.1| - 0.038 13.5 5.5 0.22 11.1 0.1 3.1 3 0 0 3 3 3 0 C2H2 type zinc-finger zf-ribbon_3 PF13248.6 gi|313125053|ref|YP_004035317.1| - 0.1 12.0 10.8 0.97 8.9 0.2 3.5 4 0 0 4 4 3 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|313125053|ref|YP_004035317.1| - 0.34 11.4 6.7 3.7 8.2 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain UPF0547 PF10571.9 gi|313125053|ref|YP_004035317.1| - 0.34 11.0 14.8 3.9 7.7 0.2 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|313125053|ref|YP_004035317.1| - 0.4 10.3 6.0 10 5.8 0.1 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF1272 PF06906.11 gi|313125053|ref|YP_004035317.1| - 0.45 10.6 9.3 2.9 8.0 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) DZR PF12773.7 gi|313125053|ref|YP_004035317.1| - 0.48 10.5 7.7 13 5.9 8.0 2.3 1 1 1 2 2 2 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|313125053|ref|YP_004035317.1| - 0.55 10.2 9.8 4.3 7.4 0.1 3.0 2 1 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein HypA PF01155.19 gi|313125053|ref|YP_004035317.1| - 0.62 10.1 5.5 2.4 8.2 1.5 2.3 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sgf11 PF08209.11 gi|313125053|ref|YP_004035317.1| - 0.63 9.7 5.3 18 5.0 0.3 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-TFIIB PF13453.6 gi|313125053|ref|YP_004035317.1| - 1.1 8.7 9.4 3 7.3 0.7 3.1 3 0 0 3 3 3 0 Transcription factor zinc-finger IBR PF01485.21 gi|313125053|ref|YP_004035317.1| - 1.4 9.2 5.6 13 6.1 5.6 2.1 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_5 PF13719.6 gi|313125053|ref|YP_004035317.1| - 1.8 8.4 10.6 17 5.2 0.5 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|313125053|ref|YP_004035317.1| - 3 7.6 6.8 2.7 7.8 1.4 2.9 1 1 1 2 2 2 0 Ribosomal protein S27 Prok-RING_1 PF14446.6 gi|313125053|ref|YP_004035317.1| - 3.2 7.8 9.0 14 5.7 5.2 2.9 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|313125053|ref|YP_004035317.1| - 3.2 7.7 4.7 20 5.1 0.2 2.6 3 0 0 3 3 3 0 Rad50 zinc hook motif Cys_rich_KTR PF14205.6 gi|313125053|ref|YP_004035317.1| - 4.3 7.2 6.3 11 6.0 3.8 2.5 2 1 0 2 2 2 0 Cysteine-rich KTR DnaJ_CXXCXGXG PF00684.19 gi|313125053|ref|YP_004035317.1| - 4.7 7.6 7.4 1e+02 3.4 7.4 2.4 1 1 0 1 1 1 0 DnaJ central domain Glyco_tranf_2_3 PF13641.6 gi|313125054|ref|YP_004035318.1| - 1.6e-36 126.4 0.0 2.1e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|313125054|ref|YP_004035318.1| - 7.3e-35 120.3 0.0 1.1e-34 119.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|313125054|ref|YP_004035318.1| - 2.5e-31 109.1 1.3 2.5e-31 109.1 1.3 3.0 2 1 0 2 2 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|313125054|ref|YP_004035318.1| - 3.2e-17 62.6 0.0 5.8e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|313125054|ref|YP_004035318.1| - 1.3e-15 57.0 1.5 2.1e-09 36.6 0.0 3.1 2 1 1 3 3 3 3 Chitin synthase Glyco_tranf_2_2 PF10111.9 gi|313125054|ref|YP_004035318.1| - 1.5e-13 50.8 0.0 3.1e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.14 gi|313125054|ref|YP_004035318.1| - 1.1e-06 27.5 9.6 4e-06 25.6 0.2 2.6 3 0 0 3 3 3 2 Cellulose synthase Glyco_tranf_2_4 PF13704.6 gi|313125054|ref|YP_004035318.1| - 0.0029 18.1 0.0 0.0065 17.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Tnp_P_element PF12017.8 gi|313125054|ref|YP_004035318.1| - 0.03 13.7 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 Transposase protein GNT-I PF03071.15 gi|313125054|ref|YP_004035318.1| - 0.1 11.3 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 GNT-I family Syndecan PF01034.20 gi|313125054|ref|YP_004035318.1| - 0.51 10.3 0.0 0.51 10.3 0.0 3.0 2 0 0 2 2 1 0 Syndecan domain zinc_ribbon_9 PF14369.6 gi|313125055|ref|YP_004035319.1| - 0.0034 17.6 1.8 0.0097 16.1 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon DZR PF12773.7 gi|313125055|ref|YP_004035319.1| - 0.0085 16.1 0.2 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|313125055|ref|YP_004035319.1| - 0.0093 15.4 2.2 1.4 8.5 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf_Rg PF17915.1 gi|313125055|ref|YP_004035319.1| - 0.017 14.5 0.3 0.066 12.6 0.0 1.9 2 0 0 2 2 2 0 Reverse gyrase zinc finger FYVE PF01363.21 gi|313125055|ref|YP_004035319.1| - 0.067 13.3 0.2 0.088 13.0 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger UPRTase PF14681.6 gi|313125056|ref|YP_004035320.1| - 2.2e-44 151.4 0.0 2.5e-44 151.2 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|313125056|ref|YP_004035320.1| - 2.4e-07 30.4 0.1 3.5e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Phage_r1t_holin PF16945.5 gi|313125057|ref|YP_004035321.1| - 0.057 13.6 3.8 0.069 13.3 3.8 1.1 1 0 0 1 1 1 0 Putative lactococcus lactis phage r1t holin ArsA_ATPase PF02374.15 gi|313125059|ref|YP_004035323.1| - 7.8e-70 235.5 0.0 9.6e-70 235.2 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|313125059|ref|YP_004035323.1| - 4.2e-11 43.1 0.0 6e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313125059|ref|YP_004035323.1| - 5e-08 33.1 0.0 8.8e-08 32.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|313125059|ref|YP_004035323.1| - 5.6e-05 22.7 0.0 0.0027 17.2 0.0 2.4 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ATPase PF06745.13 gi|313125059|ref|YP_004035323.1| - 0.00037 19.9 0.0 0.00052 19.4 0.0 1.3 1 0 0 1 1 1 1 KaiC PhoH PF02562.16 gi|313125059|ref|YP_004035323.1| - 0.013 15.0 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|313125059|ref|YP_004035323.1| - 0.031 14.4 2.2 0.041 14.0 0.1 2.4 2 2 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|313125059|ref|YP_004035323.1| - 0.048 12.9 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Fer4_NifH PF00142.18 gi|313125059|ref|YP_004035323.1| - 0.056 12.9 0.0 0.093 12.2 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|313125059|ref|YP_004035323.1| - 0.063 12.9 0.2 0.19 11.4 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|313125059|ref|YP_004035323.1| - 0.064 12.4 0.2 0.1 11.7 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|313125059|ref|YP_004035323.1| - 0.083 12.5 8.4 0.033 13.8 3.9 2.5 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|313125059|ref|YP_004035323.1| - 0.092 12.5 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|313125059|ref|YP_004035323.1| - 0.1 12.4 0.1 0.3 10.8 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|313125059|ref|YP_004035323.1| - 0.16 10.9 0.1 0.37 9.7 0.1 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|313125059|ref|YP_004035323.1| - 0.34 11.2 4.6 16 5.7 1.6 3.3 2 1 0 2 2 2 0 AAA domain Cupin_2 PF07883.11 gi|313125060|ref|YP_004035324.1| - 7.3e-15 54.5 0.7 1.1e-14 53.9 0.7 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|313125060|ref|YP_004035324.1| - 0.00013 21.6 0.3 0.00028 20.5 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|313125060|ref|YP_004035324.1| - 0.0011 18.9 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|313125060|ref|YP_004035324.1| - 0.024 14.3 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Cupin Pirin PF02678.16 gi|313125060|ref|YP_004035324.1| - 0.06 13.3 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 Pirin TF_Zn_Ribbon PF08271.12 gi|313125060|ref|YP_004035324.1| - 0.066 12.7 2.1 0.12 11.9 2.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DMSP_lyase PF16867.5 gi|313125060|ref|YP_004035324.1| - 0.15 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Pirin_C PF05726.13 gi|313125060|ref|YP_004035324.1| - 0.17 12.3 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain PCuAC PF04314.13 gi|313125060|ref|YP_004035324.1| - 0.18 11.6 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Copper chaperone PCu(A)C Zn-ribbon_8 PF09723.10 gi|313125060|ref|YP_004035324.1| - 0.34 11.1 4.3 2.3 8.4 4.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Sgf11 PF08209.11 gi|313125060|ref|YP_004035324.1| - 0.72 9.5 0.0 0.72 9.5 0.0 2.5 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) CstA PF02554.14 gi|313125061|ref|YP_004035325.1| - 1.2e-107 360.1 19.0 1.2e-107 360.1 19.0 2.4 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|313125061|ref|YP_004035325.1| - 3.2e-29 101.7 4.6 3.2e-29 101.7 4.6 3.7 4 1 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA Vut_1 PF02592.15 gi|313125061|ref|YP_004035325.1| - 4.4 7.6 22.3 0.098 13.0 6.1 3.3 2 1 0 2 2 2 0 Putative vitamin uptake transporter Cupin_2 PF07883.11 gi|313125063|ref|YP_004035327.1| - 9.8e-12 44.4 0.0 1.5e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Ectoine_synth PF06339.12 gi|313125063|ref|YP_004035327.1| - 0.00066 19.9 0.0 0.00076 19.7 0.0 1.2 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|313125063|ref|YP_004035327.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|313125063|ref|YP_004035327.1| - 0.0048 16.5 0.0 0.0071 16.0 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|313125063|ref|YP_004035327.1| - 0.008 16.1 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ppnp PF06865.11 gi|313125063|ref|YP_004035327.1| - 0.017 15.5 0.0 0.031 14.7 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase CENP-C_C PF11699.8 gi|313125063|ref|YP_004035327.1| - 0.17 12.1 0.0 0.24 11.6 0.0 1.3 1 1 0 1 1 1 0 Mif2/CENP-C like DUF4398 PF14346.6 gi|313125065|ref|YP_004035329.1| - 0.76 10.4 5.0 0.23 12.1 2.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Peptidase_M48 PF01435.18 gi|313125066|ref|YP_004035330.1| - 7.2e-31 107.5 0.0 7.4e-30 104.2 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|313125066|ref|YP_004035330.1| - 2.2e-07 30.4 0.0 4.2e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 LPG_synthase_TM PF03706.13 gi|313125066|ref|YP_004035330.1| - 0.00024 20.7 13.1 0.028 13.9 2.7 2.2 2 0 0 2 2 2 2 Lysylphosphatidylglycerol synthase TM region SprT-like PF10263.9 gi|313125066|ref|YP_004035330.1| - 0.0015 18.4 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|313125066|ref|YP_004035330.1| - 0.035 14.4 0.3 0.17 12.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) DUF4381 PF14316.6 gi|313125066|ref|YP_004035330.1| - 0.82 9.9 3.1 0.92 9.7 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) DUF4129 PF13559.6 gi|313125067|ref|YP_004035331.1| - 3.9e-11 43.0 3.2 3.9e-11 43.0 3.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) MGC-24 PF05283.11 gi|313125067|ref|YP_004035331.1| - 0.047 14.2 0.2 0.092 13.2 0.2 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF4366 PF14283.6 gi|313125067|ref|YP_004035331.1| - 0.24 11.4 0.7 0.73 9.9 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4366) DUF4345 PF14248.6 gi|313125068|ref|YP_004035332.1| - 0.0021 18.0 0.8 0.0032 17.4 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) HemY_N PF07219.13 gi|313125068|ref|YP_004035332.1| - 0.016 15.4 0.4 0.016 15.4 0.4 3.6 3 1 1 4 4 4 0 HemY protein N-terminus DUF3437 PF11919.8 gi|313125068|ref|YP_004035332.1| - 0.2 11.6 0.5 0.48 10.4 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) DUF58 PF01882.18 gi|313125069|ref|YP_004035333.1| - 1.4e-13 50.9 1.0 4.2e-13 49.4 1.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|313125069|ref|YP_004035333.1| - 9.4e-11 41.9 0.3 2.4e-10 40.6 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|313125069|ref|YP_004035333.1| - 2.6e-05 24.4 0.1 6e-05 23.2 0.1 1.6 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase EF-hand_6 PF13405.6 gi|313125071|ref|YP_004035335.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.6 2 0 0 2 2 2 0 EF-hand domain TrmB PF01978.19 gi|313125072|ref|YP_004035336.1| - 1.1e-13 50.8 0.0 1.5e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313125072|ref|YP_004035336.1| - 9.1e-06 25.5 0.1 1.3e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313125072|ref|YP_004035336.1| - 6e-05 22.5 0.1 9.7e-05 21.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|313125072|ref|YP_004035336.1| - 0.0005 19.9 0.1 0.00079 19.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313125072|ref|YP_004035336.1| - 0.00075 19.2 0.0 0.0029 17.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313125072|ref|YP_004035336.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|313125072|ref|YP_004035336.1| - 0.017 14.9 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Trm5_N PF18093.1 gi|313125072|ref|YP_004035336.1| - 0.02 14.8 0.1 0.04 13.8 0.1 1.6 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain HTH_20 PF12840.7 gi|313125072|ref|YP_004035336.1| - 0.028 14.5 0.1 0.042 13.9 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|313125072|ref|YP_004035336.1| - 0.044 13.7 0.0 0.21 11.5 0.0 1.9 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) MetJ PF01340.20 gi|313125072|ref|YP_004035336.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.3 1 1 0 1 1 1 0 Met Apo-repressor, MetJ GntR PF00392.21 gi|313125072|ref|YP_004035336.1| - 0.22 11.2 0.4 0.4 10.4 0.1 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PALP PF00291.25 gi|313125073|ref|YP_004035337.1| - 7.3e-74 248.8 0.6 8.5e-74 248.6 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|313125073|ref|YP_004035337.1| - 0.053 13.7 0.0 2.2 8.5 0.0 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FlaC_arch PF05377.11 gi|313125074|ref|YP_004035338.1| - 0.0032 17.8 0.3 0.0054 17.1 0.3 1.3 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Mto2_bdg PF12808.7 gi|313125074|ref|YP_004035338.1| - 0.0067 16.7 3.3 0.0067 16.7 3.3 1.7 2 0 0 2 2 2 1 Micro-tubular organiser Mto1 C-term Mto2-binding region PV-1 PF06637.11 gi|313125074|ref|YP_004035338.1| - 0.011 14.6 1.7 0.013 14.4 1.7 1.2 1 0 0 1 1 1 0 PV-1 protein (PLVAP) DUF4407 PF14362.6 gi|313125074|ref|YP_004035338.1| - 0.015 14.7 0.8 0.016 14.5 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4763 PF15960.5 gi|313125074|ref|YP_004035338.1| - 0.015 14.6 1.1 0.019 14.3 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) GAS PF13851.6 gi|313125074|ref|YP_004035338.1| - 0.017 14.4 0.5 0.021 14.2 0.5 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Herpes_BLRF2 PF05812.12 gi|313125074|ref|YP_004035338.1| - 0.021 14.9 0.2 0.028 14.5 0.2 1.2 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein Cep57_CLD_2 PF14197.6 gi|313125074|ref|YP_004035338.1| - 0.029 14.5 5.0 0.095 12.8 5.5 1.6 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 STAT_alpha PF01017.20 gi|313125074|ref|YP_004035338.1| - 0.044 13.7 0.2 0.055 13.4 0.2 1.1 1 0 0 1 1 1 0 STAT protein, all-alpha domain Dor1 PF04124.12 gi|313125074|ref|YP_004035338.1| - 0.044 12.4 0.4 0.053 12.2 0.4 1.1 1 0 0 1 1 1 0 Dor1-like family Jnk-SapK_ap_N PF09744.9 gi|313125074|ref|YP_004035338.1| - 0.057 13.6 4.2 0.072 13.3 4.2 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 GrpE PF01025.19 gi|313125074|ref|YP_004035338.1| - 0.085 12.5 2.1 0.1 12.3 2.1 1.1 1 0 0 1 1 1 0 GrpE V_ATPase_I PF01496.19 gi|313125074|ref|YP_004035338.1| - 0.088 10.7 0.3 0.099 10.5 0.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family V-ATPase_G_2 PF16999.5 gi|313125074|ref|YP_004035338.1| - 0.093 13.2 7.4 0.13 12.7 7.4 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit THOC7 PF05615.13 gi|313125074|ref|YP_004035338.1| - 0.13 12.6 6.4 0.26 11.6 6.1 1.6 1 1 0 1 1 1 0 Tho complex subunit 7 UPF0242 PF06785.11 gi|313125074|ref|YP_004035338.1| - 0.15 12.2 2.0 0.18 11.9 2.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus NYD-SP28_assoc PF14775.6 gi|313125074|ref|YP_004035338.1| - 0.2 11.8 0.9 0.59 10.3 0.3 2.0 2 0 0 2 2 2 0 Sperm tail C-terminal domain 2-Hacid_dh_C PF02826.19 gi|313125075|ref|YP_004035339.1| - 1.1e-58 197.6 0.0 2e-58 196.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|313125075|ref|YP_004035339.1| - 2.1e-36 124.5 0.8 6.1e-36 123.0 0.9 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|313125075|ref|YP_004035339.1| - 0.00019 21.1 0.2 0.001 18.8 0.0 2.4 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.15 gi|313125075|ref|YP_004035339.1| - 0.0055 16.9 0.4 0.3 11.2 0.0 3.4 4 0 0 4 4 4 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|313125075|ref|YP_004035339.1| - 0.011 16.1 0.1 0.1 13.0 0.0 2.6 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.18 gi|313125075|ref|YP_004035339.1| - 0.022 15.0 0.0 0.51 10.6 0.1 2.9 2 0 0 2 2 2 0 TrkA-N domain DUF2163 PF09931.9 gi|313125075|ref|YP_004035339.1| - 0.29 11.3 1.2 4.8 7.4 0.1 2.7 2 1 0 3 3 3 0 Uncharacterized conserved protein (DUF2163) HAD PF12710.7 gi|313125076|ref|YP_004035340.1| - 2.3e-26 93.4 1.7 2.7e-26 93.1 1.7 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125076|ref|YP_004035340.1| - 2.3e-16 60.7 6.6 1e-13 52.1 6.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|313125076|ref|YP_004035340.1| - 2.3e-13 50.5 0.1 3e-09 37.0 0.0 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|313125076|ref|YP_004035340.1| - 3.9e-07 30.3 0.1 9.5e-05 22.5 0.0 2.7 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.6 gi|313125076|ref|YP_004035340.1| - 0.00095 19.6 0.2 0.0015 19.0 0.2 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Put_Phosphatase PF06888.12 gi|313125076|ref|YP_004035340.1| - 0.0016 17.9 0.0 0.053 12.9 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase S6PP PF05116.13 gi|313125076|ref|YP_004035340.1| - 0.0089 15.6 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase DUF4392 PF14336.6 gi|313125076|ref|YP_004035340.1| - 0.031 13.7 0.0 1.8 8.0 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) Hydrolase_6 PF13344.6 gi|313125076|ref|YP_004035340.1| - 0.05 13.7 0.0 0.26 11.4 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Usp PF00582.26 gi|313125078|ref|YP_004035342.1| - 2.4e-08 34.6 0.2 3.2e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family Pyr_redox_2 PF07992.14 gi|313125079|ref|YP_004035343.1| - 1.7e-70 237.6 3.4 1.7e-70 237.6 3.4 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|313125079|ref|YP_004035343.1| - 1.3e-37 128.4 3.0 1.8e-37 128.0 1.6 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|313125079|ref|YP_004035343.1| - 2.3e-20 72.9 2.6 5.8e-18 65.2 0.2 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313125079|ref|YP_004035343.1| - 2.4e-14 53.3 0.1 1.5e-13 50.6 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|313125079|ref|YP_004035343.1| - 4.3e-11 42.5 4.1 9e-08 31.6 2.1 2.5 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|313125079|ref|YP_004035343.1| - 5.7e-10 38.8 7.6 6e-07 28.9 0.7 3.8 4 0 0 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.19 gi|313125079|ref|YP_004035343.1| - 1.6e-09 37.5 6.9 0.00092 18.5 0.3 3.2 2 1 1 3 3 3 3 FAD binding domain HI0933_like PF03486.14 gi|313125079|ref|YP_004035343.1| - 6.8e-08 31.6 3.1 0.00027 19.8 0.2 3.5 4 0 0 4 4 4 2 HI0933-like protein FAD_oxidored PF12831.7 gi|313125079|ref|YP_004035343.1| - 1.1e-07 31.6 4.3 2.8e-07 30.2 0.4 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|313125079|ref|YP_004035343.1| - 2.2e-07 31.0 2.0 0.00073 19.7 0.5 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|313125079|ref|YP_004035343.1| - 4.4e-07 29.8 15.6 0.052 13.1 1.4 4.5 4 1 1 5 5 5 3 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|313125079|ref|YP_004035343.1| - 3.3e-05 23.5 1.4 0.0013 18.4 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|313125079|ref|YP_004035343.1| - 0.00033 20.0 5.9 0.14 11.5 0.1 3.3 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|313125079|ref|YP_004035343.1| - 0.00038 20.4 3.9 0.0091 15.9 0.1 2.6 3 0 0 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|313125079|ref|YP_004035343.1| - 0.00057 20.3 0.3 0.37 11.3 0.1 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|313125079|ref|YP_004035343.1| - 0.0037 17.5 0.8 0.058 13.7 0.1 2.6 2 0 0 2 2 2 1 TrkA-N domain Lycopene_cycl PF05834.12 gi|313125079|ref|YP_004035343.1| - 0.004 16.3 1.0 0.72 8.8 0.1 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|313125079|ref|YP_004035343.1| - 0.0043 16.3 5.1 0.057 12.7 0.2 2.8 3 1 0 3 3 3 1 Thi4 family K_oxygenase PF13434.6 gi|313125079|ref|YP_004035343.1| - 0.0087 15.2 0.0 2.3 7.3 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Hydrolase PF00702.26 gi|313125079|ref|YP_004035343.1| - 0.009 16.3 0.1 0.22 11.8 0.0 2.7 3 1 0 3 3 2 1 haloacid dehalogenase-like hydrolase MDMPI_C PF07398.11 gi|313125079|ref|YP_004035343.1| - 0.024 15.5 0.5 0.024 15.5 0.5 2.4 2 0 0 2 2 1 0 MDMPI C-terminal domain NAD_binding_9 PF13454.6 gi|313125079|ref|YP_004035343.1| - 0.054 13.5 2.9 9.8 6.1 0.1 3.4 3 1 1 4 4 4 0 FAD-NAD(P)-binding XdhC_C PF13478.6 gi|313125079|ref|YP_004035343.1| - 0.057 13.9 0.1 1.1 9.8 0.0 2.6 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|313125079|ref|YP_004035343.1| - 0.062 12.7 0.1 0.69 9.3 0.0 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|313125079|ref|YP_004035343.1| - 1.7 7.4 4.4 0.38 9.6 0.1 2.1 3 0 0 3 3 3 0 Tryptophan halogenase 2-oxoacid_dh PF00198.23 gi|313125080|ref|YP_004035344.1| - 1.7e-90 302.5 0.0 2.5e-90 302.0 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|313125080|ref|YP_004035344.1| - 2.3e-24 85.0 1.6 4.6e-24 84.0 1.6 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|313125080|ref|YP_004035344.1| - 3.9e-23 81.5 0.7 3.7e-16 59.2 0.1 2.8 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|313125080|ref|YP_004035344.1| - 7.4e-07 28.9 0.1 0.017 15.0 0.0 3.0 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|313125080|ref|YP_004035344.1| - 0.00038 21.1 1.2 0.1 13.3 0.0 2.7 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.19 gi|313125080|ref|YP_004035344.1| - 0.0035 17.2 0.2 0.0089 15.9 0.2 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|313125080|ref|YP_004035344.1| - 0.068 13.1 0.1 0.19 11.7 0.1 1.8 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain NUDIX-like PF09296.11 gi|313125080|ref|YP_004035344.1| - 3.4 8.4 6.9 4.3 8.0 5.4 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain Transket_pyr PF02779.24 gi|313125081|ref|YP_004035345.1| - 3e-51 173.6 0.0 4.4e-51 173.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|313125081|ref|YP_004035345.1| - 2.1e-38 131.0 0.5 3.4e-38 130.3 0.2 1.5 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|313125081|ref|YP_004035345.1| - 0.00013 22.2 0.0 0.00023 21.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|313125082|ref|YP_004035346.1| - 4.5e-89 298.3 0.0 5.4e-89 298.1 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|313125082|ref|YP_004035346.1| - 6.6e-07 28.8 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|313125082|ref|YP_004035346.1| - 4.3e-05 22.6 0.0 8.5e-05 21.7 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 gi|313125082|ref|YP_004035346.1| - 0.0006 19.6 3.0 0.001 18.8 0.3 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.6 gi|313125082|ref|YP_004035346.1| - 0.035 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mig-14 PF07395.11 gi|313125082|ref|YP_004035346.1| - 0.17 11.2 0.0 0.88 8.9 0.0 1.9 2 0 0 2 2 2 0 Mig-14 Radical_SAM PF04055.21 gi|313125083|ref|YP_004035347.1| - 4.6e-14 53.1 0.0 8.9e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|313125083|ref|YP_004035347.1| - 1.3e-10 41.6 0.1 6.1e-10 39.5 0.0 2.0 2 0 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|313125083|ref|YP_004035347.1| - 0.022 14.8 0.4 3 7.9 0.0 2.9 1 1 2 3 3 3 0 B12 binding domain BKACE PF05853.12 gi|313125083|ref|YP_004035347.1| - 0.025 13.9 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme DUF2090 PF09863.9 gi|313125083|ref|YP_004035347.1| - 0.074 12.1 0.0 2.2 7.2 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2090) DUF4157 PF13699.6 gi|313125084|ref|YP_004035348.1| - 8.2e-30 102.9 1.6 2.3e-29 101.4 1.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313125084|ref|YP_004035348.1| - 0.023 15.0 0.1 0.042 14.2 0.1 1.4 1 0 0 1 1 1 0 Effector protein Cohesin_load PF10345.9 gi|313125084|ref|YP_004035348.1| - 0.14 10.6 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 Cohesin loading factor Carbam_trans_N PF02543.15 gi|313125085|ref|YP_004035349.1| - 0.024 14.3 0.0 0.028 14.1 0.0 1.1 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus DEAD PF00270.29 gi|313125087|ref|YP_004035351.1| - 4.4e-25 88.5 0.0 2.2e-24 86.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|313125087|ref|YP_004035351.1| - 6.2e-22 78.0 0.0 8.4e-22 77.6 0.0 1.1 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|313125087|ref|YP_004035351.1| - 2e-11 44.2 0.0 3.1e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|313125087|ref|YP_004035351.1| - 1.7e-08 34.8 0.0 1.1e-07 32.2 0.0 2.3 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|313125087|ref|YP_004035351.1| - 4e-06 27.3 0.1 2.5e-05 24.8 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|313125087|ref|YP_004035351.1| - 0.0052 16.6 0.0 0.018 14.9 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HAD_2 PF13419.6 gi|313125088|ref|YP_004035352.1| - 1.5e-25 90.3 0.0 1.7e-25 90.1 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125088|ref|YP_004035352.1| - 3.4e-14 53.6 0.2 4.8e-13 49.9 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125088|ref|YP_004035352.1| - 3.8e-09 36.5 0.1 9.3e-09 35.2 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|313125088|ref|YP_004035352.1| - 3.1e-07 31.0 0.7 4.3e-07 30.5 0.7 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase INT_SG_DDX_CT_C PF15300.6 gi|313125088|ref|YP_004035352.1| - 0.2 11.5 0.0 0.76 9.6 0.0 1.9 2 0 0 2 2 2 0 INTS6/SAGE1/DDX26B/CT45 C-terminus NucS PF01939.16 gi|313125089|ref|YP_004035353.1| - 1.4e-08 34.4 0.0 1.9e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS zf-C4_Topoisom PF01396.19 gi|313125089|ref|YP_004035353.1| - 5e-07 29.4 1.6 2.9e-06 26.9 0.1 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-Mss51 PF13824.6 gi|313125089|ref|YP_004035353.1| - 0.036 14.2 3.2 5.3 7.2 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc-ribbons_6 PF07191.12 gi|313125089|ref|YP_004035353.1| - 0.048 13.6 3.6 0.95 9.5 3.1 2.4 1 1 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|313125089|ref|YP_004035353.1| - 0.056 12.9 2.4 1.7 8.1 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|313125089|ref|YP_004035353.1| - 0.083 13.1 15.9 0.13 12.5 0.2 3.7 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.6 gi|313125089|ref|YP_004035353.1| - 0.11 11.9 0.2 0.11 11.9 0.2 2.6 2 1 1 3 3 3 0 Transcription factor zinc-finger Zn_ribbon_recom PF13408.6 gi|313125089|ref|YP_004035353.1| - 0.23 12.0 0.2 0.23 12.0 0.2 2.5 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain zf_UBZ PF18439.1 gi|313125089|ref|YP_004035353.1| - 0.37 10.4 2.5 2.7 7.7 0.1 2.7 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger ADK_lid PF05191.14 gi|313125089|ref|YP_004035353.1| - 1.4 8.9 8.3 4.4 7.4 0.3 3.6 2 1 1 3 3 3 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|313125089|ref|YP_004035353.1| - 2 8.6 9.2 1.2 9.3 3.0 3.5 3 1 0 3 3 3 0 Zinc ribbon domain tRNA_int_endo_N PF02778.14 gi|313125090|ref|YP_004035354.1| - 5.5e-31 106.0 0.2 3.3e-15 55.5 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_endo PF01974.17 gi|313125090|ref|YP_004035354.1| - 1.9e-30 104.8 0.8 3e-23 81.7 0.0 3.8 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_end_N2 PF12928.7 gi|313125090|ref|YP_004035354.1| - 0.002 18.3 0.0 0.043 14.0 0.0 2.4 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term tRNA-synt_1b PF00579.25 gi|313125091|ref|YP_004035355.1| - 9.2e-43 146.6 0.0 4.7e-26 91.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) OCD_Mu_crystall PF02423.15 gi|313125092|ref|YP_004035356.1| - 2.7e-59 200.7 0.2 3.1e-59 200.5 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|313125092|ref|YP_004035356.1| - 0.0077 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|313125093|ref|YP_004035357.1| - 1.1e-76 258.8 5.6 1.2e-76 258.6 5.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313125093|ref|YP_004035357.1| - 8.6e-10 38.2 0.6 1.2e-09 37.8 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313125093|ref|YP_004035357.1| - 1.6e-08 34.1 4.4 0.0018 17.6 2.6 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313125093|ref|YP_004035357.1| - 8.4e-08 31.8 2.0 0.0028 17.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|313125093|ref|YP_004035357.1| - 5.4e-07 29.7 0.6 1.4e-06 28.5 0.6 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|313125093|ref|YP_004035357.1| - 2.2e-06 28.1 3.2 0.00014 22.4 2.4 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313125093|ref|YP_004035357.1| - 2.8e-06 26.3 1.6 0.014 14.1 1.5 2.1 2 0 0 2 2 2 2 HI0933-like protein Amino_oxidase PF01593.24 gi|313125093|ref|YP_004035357.1| - 4.8e-06 26.1 1.6 0.00073 18.9 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|313125093|ref|YP_004035357.1| - 2.2e-05 24.0 5.0 7.5e-05 22.3 5.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|313125093|ref|YP_004035357.1| - 0.00042 19.6 1.5 0.00065 19.0 1.5 1.2 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.6 gi|313125093|ref|YP_004035357.1| - 0.0091 16.4 0.3 0.017 15.5 0.3 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|313125093|ref|YP_004035357.1| - 0.0092 15.3 6.0 0.73 9.0 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|313125093|ref|YP_004035357.1| - 0.052 12.8 1.2 0.082 12.2 1.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|313125093|ref|YP_004035357.1| - 0.11 12.4 4.9 1.1 9.2 1.4 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|313125093|ref|YP_004035357.1| - 0.14 11.7 1.0 0.28 10.7 1.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|313125093|ref|YP_004035357.1| - 0.14 11.1 1.4 0.3 10.1 1.4 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|313125093|ref|YP_004035357.1| - 0.24 10.2 2.3 0.31 9.8 1.4 1.6 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|313125093|ref|YP_004035357.1| - 3.9 7.3 5.6 2.1 8.2 2.5 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|313125093|ref|YP_004035357.1| - 5.2 6.1 4.6 7.6 5.5 4.6 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A tRNA-synt_2d PF01409.20 gi|313125094|ref|YP_004035358.1| - 3.6e-79 265.7 0.0 4.5e-79 265.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|313125094|ref|YP_004035358.1| - 0.00018 20.7 0.3 0.024 13.7 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|313125094|ref|YP_004035358.1| - 0.0003 20.6 0.4 0.003 17.4 0.1 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|313125094|ref|YP_004035358.1| - 0.00093 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding tRNA_synthFbeta PF17759.1 gi|313125094|ref|YP_004035358.1| - 0.0034 16.8 0.0 0.26 10.7 0.0 2.2 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain Fe_dep_repress PF01325.19 gi|313125094|ref|YP_004035358.1| - 0.0047 17.1 0.0 0.0094 16.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|313125094|ref|YP_004035358.1| - 0.0053 16.7 0.1 2.1 8.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix MarR PF01047.22 gi|313125094|ref|YP_004035358.1| - 0.0093 15.9 0.0 0.24 11.3 0.0 2.4 2 0 0 2 2 2 1 MarR family DUF4364 PF14277.6 gi|313125094|ref|YP_004035358.1| - 0.017 14.9 0.3 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_Crp_2 PF13545.6 gi|313125094|ref|YP_004035358.1| - 0.026 14.5 0.0 0.083 12.9 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|313125094|ref|YP_004035358.1| - 0.066 12.9 0.3 1.2 8.9 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|313125094|ref|YP_004035358.1| - 0.25 11.3 1.5 10 6.1 0.1 3.0 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB tRNA_synthFbeta PF17759.1 gi|313125095|ref|YP_004035359.1| - 3.7e-42 144.2 0.0 5.1e-42 143.7 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|313125095|ref|YP_004035359.1| - 2.3e-15 56.6 0.1 2.6e-14 53.2 0.1 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|313125095|ref|YP_004035359.1| - 2.3e-11 43.7 0.0 3.5e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|313125095|ref|YP_004035359.1| - 1.9e-10 40.8 0.2 0.00013 22.1 0.0 3.8 3 1 0 3 3 3 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|313125095|ref|YP_004035359.1| - 4.2e-06 26.4 0.0 8.6e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) TIP49_C PF17856.1 gi|313125095|ref|YP_004035359.1| - 0.2 11.8 0.2 32 4.7 0.0 2.9 3 0 0 3 3 3 0 TIP49 AAA-lid domain Cys_Met_Meta_PP PF01053.20 gi|313125096|ref|YP_004035360.1| - 7.2e-137 456.0 0.0 8.1e-137 455.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|313125096|ref|YP_004035360.1| - 1.8e-11 43.9 1.8 4.2e-10 39.5 1.8 2.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|313125096|ref|YP_004035360.1| - 6.7e-08 32.2 0.1 4.6e-07 29.4 0.1 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|313125096|ref|YP_004035360.1| - 4.6e-05 22.8 0.0 6.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|313125096|ref|YP_004035360.1| - 0.00027 20.0 0.0 0.00041 19.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|313125096|ref|YP_004035360.1| - 0.00038 19.1 0.0 0.00091 17.8 0.0 1.5 1 1 0 1 1 1 1 Methionine gamma-lyase tRNA-synt_1 PF00133.22 gi|313125097|ref|YP_004035361.1| - 5.8e-132 441.0 0.6 1.1e-130 436.8 0.6 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|313125097|ref|YP_004035361.1| - 6.6e-35 120.3 0.2 1.3e-34 119.3 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|313125097|ref|YP_004035361.1| - 5.8e-20 71.4 0.1 2.5e-09 36.4 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|313125097|ref|YP_004035361.1| - 1.4e-06 27.9 0.0 0.01 15.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|313125097|ref|YP_004035361.1| - 7.7e-06 25.5 0.0 0.00078 19.0 0.0 2.7 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|313125097|ref|YP_004035361.1| - 6.9e-05 21.9 0.0 0.0015 17.5 0.0 2.6 2 1 0 2 2 2 1 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|313125097|ref|YP_004035361.1| - 0.032 14.3 3.3 0.53 10.4 0.7 2.9 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|313125097|ref|YP_004035361.1| - 0.056 13.5 0.4 4.6 7.3 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon SpecificRecomb PF10136.9 gi|313125097|ref|YP_004035361.1| - 0.083 11.2 0.4 0.46 8.7 0.0 1.9 2 0 0 2 2 2 0 Site-specific recombinase UPF0547 PF10571.9 gi|313125097|ref|YP_004035361.1| - 1.3 9.2 5.1 20 5.4 0.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PsbH PF00737.20 gi|313125098|ref|YP_004035362.1| - 8.5 6.2 6.4 1 9.1 1.6 1.9 2 0 0 2 2 2 0 Photosystem II 10 kDa phosphoprotein DHO_dh PF01180.21 gi|313125099|ref|YP_004035363.1| - 9.7e-85 284.3 0.0 1.1e-84 284.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|313125099|ref|YP_004035363.1| - 1.8e-05 24.3 0.3 0.00018 21.1 0.2 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|313125099|ref|YP_004035363.1| - 0.053 13.0 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein SymE_toxin PF08845.10 gi|313125100|ref|YP_004035364.1| - 0.0022 18.0 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|313125100|ref|YP_004035364.1| - 0.016 15.2 0.2 0.024 14.6 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MC1 PF05854.11 gi|313125101|ref|YP_004035365.1| - 3.8e-47 158.5 0.3 4.5e-47 158.3 0.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 PTSIIA_gutA PF03829.13 gi|313125102|ref|YP_004035366.1| - 0.021 14.7 0.2 2.7 7.9 0.0 3.1 3 1 0 4 4 4 0 PTS system glucitol/sorbitol-specific IIA component Transglut_core3 PF13471.6 gi|313125103|ref|YP_004035367.1| - 3.9e-25 88.0 0.4 5.6e-25 87.5 0.4 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF3995 PF13160.6 gi|313125103|ref|YP_004035367.1| - 0.72 10.2 8.5 0.44 10.9 6.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) HTH_24 PF13412.6 gi|313125104|ref|YP_004035368.1| - 1.8e-09 37.0 0.0 3.6e-09 36.0 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313125104|ref|YP_004035368.1| - 9.7e-05 22.2 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313125104|ref|YP_004035368.1| - 0.00021 21.1 0.0 0.0003 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|313125104|ref|YP_004035368.1| - 0.00025 20.6 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|313125104|ref|YP_004035368.1| - 0.00035 20.4 0.1 0.00046 20.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|313125104|ref|YP_004035368.1| - 0.0004 20.3 0.0 0.00047 20.1 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|313125104|ref|YP_004035368.1| - 0.0015 18.2 0.1 0.0024 17.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|313125104|ref|YP_004035368.1| - 0.0026 17.7 0.1 0.0034 17.3 0.1 1.2 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.10 gi|313125104|ref|YP_004035368.1| - 0.0059 16.5 0.3 0.037 14.0 0.2 2.2 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|313125104|ref|YP_004035368.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_42 PF06224.12 gi|313125104|ref|YP_004035368.1| - 0.017 14.7 0.0 0.017 14.7 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|313125104|ref|YP_004035368.1| - 0.018 15.1 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|313125104|ref|YP_004035368.1| - 0.02 15.1 0.0 0.032 14.5 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein RNA_pol_Rpc34 PF05158.12 gi|313125104|ref|YP_004035368.1| - 0.028 13.8 0.0 0.033 13.6 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit PadR PF03551.14 gi|313125104|ref|YP_004035368.1| - 0.039 13.9 0.3 0.071 13.1 0.3 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|313125104|ref|YP_004035368.1| - 0.052 13.4 0.1 0.067 13.0 0.1 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix BLACT_WH PF17778.1 gi|313125104|ref|YP_004035368.1| - 0.062 13.3 0.1 0.66 10.0 0.1 2.4 1 1 1 2 2 2 0 Beta-lactamase associated winged helix domain HTH_27 PF13463.6 gi|313125104|ref|YP_004035368.1| - 0.067 13.7 0.2 0.081 13.4 0.2 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|313125104|ref|YP_004035368.1| - 0.07 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313125104|ref|YP_004035368.1| - 0.1 12.4 0.1 0.58 10.0 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|313125104|ref|YP_004035368.1| - 0.15 12.1 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix FaeA PF04703.12 gi|313125104|ref|YP_004035368.1| - 0.16 12.4 0.0 0.24 11.8 0.0 1.3 1 1 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.20 gi|313125104|ref|YP_004035368.1| - 0.17 12.3 0.0 0.25 11.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator YokU PF14122.6 gi|313125105|ref|YP_004035369.1| - 0.024 14.6 0.1 0.06 13.3 0.0 1.7 2 0 0 2 2 2 0 YokU-like protein, putative antitoxin eIF-1a PF01176.19 gi|313125106|ref|YP_004035370.1| - 1.1e-21 76.4 0.3 1.4e-21 76.1 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Methyltransf_25 PF13649.6 gi|313125107|ref|YP_004035371.1| - 2.6e-12 47.3 0.0 3.9e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313125107|ref|YP_004035371.1| - 5.7e-12 46.1 0.0 9.1e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|313125107|ref|YP_004035371.1| - 1.3e-07 31.4 0.0 2.3e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|313125107|ref|YP_004035371.1| - 1.5e-07 31.4 0.0 2.1e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125107|ref|YP_004035371.1| - 8.4e-06 26.5 0.1 1.4e-05 25.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125107|ref|YP_004035371.1| - 2.8e-05 23.9 0.0 3.6e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|313125107|ref|YP_004035371.1| - 0.012 14.5 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TehB PF03848.14 gi|313125107|ref|YP_004035371.1| - 0.015 14.7 0.1 0.098 12.1 0.1 1.9 1 1 0 1 1 1 0 Tellurite resistance protein TehB SBP_bac_5 PF00496.22 gi|313125108|ref|YP_004035372.1| - 8.6e-51 173.1 2.5 5.8e-44 150.6 1.6 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313125108|ref|YP_004035372.1| - 0.033 14.0 5.9 0.058 13.3 5.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|313125109|ref|YP_004035373.1| - 7.9e-42 143.1 11.7 7.9e-42 143.1 11.7 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313125110|ref|YP_004035374.1| - 2.4e-24 86.1 11.6 2.4e-24 86.1 11.6 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313125110|ref|YP_004035374.1| - 4.5e-05 23.3 0.3 4.5e-05 23.3 0.3 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C TadZ_N PF16968.5 gi|313125110|ref|YP_004035374.1| - 0.0033 17.1 0.3 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 Pilus assembly protein TadZ N-terminal ABC_tran PF00005.27 gi|313125111|ref|YP_004035375.1| - 1.3e-29 103.5 0.0 2e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313125111|ref|YP_004035375.1| - 6.8e-21 74.6 0.3 1.6e-20 73.4 0.3 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|313125111|ref|YP_004035375.1| - 6.9e-07 28.9 0.0 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|313125111|ref|YP_004035375.1| - 2.9e-06 27.3 0.2 0.054 13.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313125111|ref|YP_004035375.1| - 6.5e-05 23.2 0.3 0.00045 20.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313125111|ref|YP_004035375.1| - 0.00034 21.0 0.0 0.00067 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.14 gi|313125111|ref|YP_004035375.1| - 0.00039 20.3 0.0 0.00089 19.2 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|313125111|ref|YP_004035375.1| - 0.00054 20.4 0.1 0.0021 18.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|313125111|ref|YP_004035375.1| - 0.00063 19.2 0.0 0.0013 18.1 0.0 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|313125111|ref|YP_004035375.1| - 0.0022 16.9 1.0 0.02 13.7 0.1 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class tRNA_lig_kinase PF08303.11 gi|313125111|ref|YP_004035375.1| - 0.006 16.7 0.0 0.015 15.4 0.0 1.5 2 0 0 2 2 2 1 tRNA ligase kinase domain AAA_23 PF13476.6 gi|313125111|ref|YP_004035375.1| - 0.0093 16.5 0.2 0.021 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain PRK PF00485.18 gi|313125111|ref|YP_004035375.1| - 0.0094 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.17 gi|313125111|ref|YP_004035375.1| - 0.013 15.2 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|313125111|ref|YP_004035375.1| - 0.021 14.6 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|313125111|ref|YP_004035375.1| - 0.024 14.6 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|313125111|ref|YP_004035375.1| - 0.029 14.9 0.0 0.055 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313125111|ref|YP_004035375.1| - 0.037 14.0 0.0 0.092 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|313125111|ref|YP_004035375.1| - 0.044 13.4 0.1 0.066 12.9 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|313125111|ref|YP_004035375.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|313125111|ref|YP_004035375.1| - 0.076 12.9 0.1 0.17 11.8 0.0 1.6 2 0 0 2 2 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|313125111|ref|YP_004035375.1| - 0.083 13.0 0.1 0.25 11.5 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|313125111|ref|YP_004035375.1| - 0.089 13.2 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PduV-EutP PF10662.9 gi|313125111|ref|YP_004035375.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|313125111|ref|YP_004035375.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|313125111|ref|YP_004035375.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|313125111|ref|YP_004035375.1| - 0.29 10.3 3.7 0.22 10.7 0.2 2.2 2 1 1 3 3 3 0 NB-ARC domain ABC_tran PF00005.27 gi|313125112|ref|YP_004035376.1| - 1.2e-30 106.8 0.0 1.7e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313125112|ref|YP_004035376.1| - 2.3e-16 60.1 0.0 4.7e-16 59.1 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region Rad17 PF03215.15 gi|313125112|ref|YP_004035376.1| - 0.0064 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|313125112|ref|YP_004035376.1| - 0.035 14.4 0.1 0.11 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313125112|ref|YP_004035376.1| - 0.052 14.1 0.0 0.096 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|313125112|ref|YP_004035376.1| - 0.086 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 gi|313125112|ref|YP_004035376.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain PmbA_TldD PF01523.16 gi|313125113|ref|YP_004035377.1| - 2e-25 90.2 2.1 2.5e-25 89.9 2.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Peripla_BP_2 PF01497.18 gi|313125115|ref|YP_004035379.1| - 6e-27 94.7 0.0 1.1e-26 93.9 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein GATase_3 PF07685.14 gi|313125116|ref|YP_004035380.1| - 2.2e-34 118.8 0.0 3.2e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|313125116|ref|YP_004035380.1| - 3.1e-14 53.1 0.0 4.9e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|313125116|ref|YP_004035380.1| - 3.4e-11 43.3 0.0 5.8e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|313125116|ref|YP_004035380.1| - 0.072 12.9 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TP_methylase PF00590.20 gi|313125117|ref|YP_004035381.1| - 1e-33 117.1 0.2 1.2e-33 116.8 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|313125118|ref|YP_004035382.1| - 3.6e-51 173.6 1.5 4.2e-51 173.4 1.5 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.16 gi|313125119|ref|YP_004035383.1| - 0 1269.7 0.0 0 1269.5 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|313125119|ref|YP_004035383.1| - 0.11 12.3 0.0 0.34 10.7 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain AAA_lid_2 PF17863.1 gi|313125120|ref|YP_004035384.1| - 2.6e-22 78.4 5.7 2.9e-22 78.3 2.7 2.6 2 0 0 2 2 2 1 AAA lid domain VWA_2 PF13519.6 gi|313125120|ref|YP_004035384.1| - 7.6e-12 45.8 0.1 2.1e-11 44.4 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|313125120|ref|YP_004035384.1| - 9e-12 44.8 0.0 2.8e-08 33.4 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.28 gi|313125120|ref|YP_004035384.1| - 2.6e-10 40.8 0.0 4.9e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|313125120|ref|YP_004035384.1| - 5.9e-09 36.1 0.0 1.7e-06 28.1 0.0 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|313125120|ref|YP_004035384.1| - 2.3e-05 23.6 0.0 0.00061 18.9 0.0 2.4 2 0 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|313125120|ref|YP_004035384.1| - 0.0056 16.4 0.0 0.18 11.5 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|313125120|ref|YP_004035384.1| - 0.018 15.4 1.8 0.058 13.8 0.2 2.7 2 1 0 2 2 2 0 AAA ATPase domain VWA_3 PF13768.6 gi|313125120|ref|YP_004035384.1| - 0.041 13.8 0.2 0.075 13.0 0.2 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain PQQ_2 PF13360.6 gi|313125121|ref|YP_004035385.1| - 8.4e-17 61.5 12.6 2.2e-08 34.0 2.8 2.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|313125121|ref|YP_004035385.1| - 1.2e-11 44.8 15.1 0.0071 16.8 0.1 7.7 8 1 1 9 9 9 4 PQQ-like domain PQQ PF01011.21 gi|313125121|ref|YP_004035385.1| - 3.6e-08 32.9 8.5 0.23 11.4 0.0 6.4 6 0 0 6 6 6 3 PQQ enzyme repeat DUF3209 PF11483.8 gi|313125122|ref|YP_004035386.1| - 1.1e-52 177.7 2.8 1.2e-52 177.5 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) CbiX PF01903.17 gi|313125123|ref|YP_004035387.1| - 2e-47 159.9 0.0 3.1e-24 85.4 0.0 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|313125123|ref|YP_004035387.1| - 5.2e-10 39.4 0.1 8.8e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|313125123|ref|YP_004035387.1| - 3.2e-08 33.2 0.0 7.3e-05 22.2 0.0 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|313125123|ref|YP_004035387.1| - 0.0002 21.3 0.1 0.00087 19.2 0.1 2.1 2 1 0 2 2 2 1 Sucrase/ferredoxin-like Ferrochelatase PF00762.19 gi|313125123|ref|YP_004035387.1| - 0.00097 18.3 0.0 0.026 13.6 0.0 2.3 1 1 1 2 2 2 1 Ferrochelatase RNA_POL_M_15KD PF02150.16 gi|313125123|ref|YP_004035387.1| - 0.21 11.5 0.8 0.4 10.6 0.8 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit LAGLIDADG_3 PF14528.6 gi|313125124|ref|YP_004035388.1| - 0.0059 16.9 0.0 0.043 14.1 0.0 2.0 2 0 0 2 2 2 1 LAGLIDADG-like domain Mersacidin PF16934.5 gi|313125124|ref|YP_004035388.1| - 0.077 12.8 0.1 0.64 9.8 0.0 2.2 1 1 1 2 2 2 0 Two-component Enterococcus faecalis cytolysin (EFC) Fer4_15 PF13459.6 gi|313125125|ref|YP_004035389.1| - 4.8e-13 49.6 9.5 1.9e-12 47.7 9.5 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|313125125|ref|YP_004035389.1| - 0.0074 16.8 3.2 0.013 16.0 3.2 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I TP_methylase PF00590.20 gi|313125126|ref|YP_004035390.1| - 3.6e-34 118.6 0.5 4.6e-34 118.2 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|313125127|ref|YP_004035391.1| - 2.6e-41 141.9 0.0 3.2e-41 141.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|313125128|ref|YP_004035392.1| - 3.2e-28 97.6 0.0 8.2e-28 96.2 0.0 1.8 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|313125128|ref|YP_004035392.1| - 8.8e-23 81.1 0.0 2.6e-22 79.6 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|313125128|ref|YP_004035392.1| - 0.032 14.9 0.1 0.38 11.4 0.2 2.4 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|313125129|ref|YP_004035393.1| - 1.3e-42 146.2 0.6 1.5e-42 146.0 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.11 gi|313125129|ref|YP_004035393.1| - 0.0044 17.7 0.0 0.014 16.1 0.0 1.8 2 0 0 2 2 2 1 Regulator of ribonuclease activity B DUF5066 PF16728.5 gi|313125129|ref|YP_004035393.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5066) TP_methylase PF00590.20 gi|313125130|ref|YP_004035394.1| - 4.6e-39 134.6 0.5 5.8e-39 134.2 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cons_hypoth95 PF03602.15 gi|313125131|ref|YP_004035395.1| - 4.3e-06 26.5 0.0 6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|313125131|ref|YP_004035395.1| - 4.7e-06 26.3 0.0 8.3e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|313125131|ref|YP_004035395.1| - 5e-06 27.1 0.1 7.9e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125131|ref|YP_004035395.1| - 8.5e-05 22.4 0.0 9.7e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|313125131|ref|YP_004035395.1| - 0.00012 21.9 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|313125131|ref|YP_004035395.1| - 0.00013 22.5 0.1 0.00021 21.9 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|313125131|ref|YP_004035395.1| - 0.0018 17.8 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_18 PF12847.7 gi|313125131|ref|YP_004035395.1| - 0.0018 18.2 0.1 0.0033 17.4 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|313125131|ref|YP_004035395.1| - 0.0024 17.0 0.0 0.0038 16.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|313125131|ref|YP_004035395.1| - 0.0039 16.5 0.0 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GATase_3 PF07685.14 gi|313125131|ref|YP_004035395.1| - 0.02 14.5 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PrmA PF06325.13 gi|313125131|ref|YP_004035395.1| - 0.028 13.8 0.1 0.042 13.2 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|313125131|ref|YP_004035395.1| - 0.069 12.8 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|313125131|ref|YP_004035395.1| - 0.16 11.5 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CbiM PF01891.16 gi|313125132|ref|YP_004035396.1| - 1.9e-49 168.3 23.6 2.3e-49 168.1 23.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 gi|313125133|ref|YP_004035397.1| - 1.9e-13 50.2 0.0 2.5e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|313125134|ref|YP_004035398.1| - 2.6e-40 138.4 8.9 3.5e-40 138.0 8.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|313125135|ref|YP_004035399.1| - 8.6e-32 110.5 0.0 1.1e-31 110.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125135|ref|YP_004035399.1| - 4.4e-13 49.7 0.0 5.1e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313125135|ref|YP_004035399.1| - 1.5e-08 34.4 0.0 2e-06 27.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|313125135|ref|YP_004035399.1| - 8.5e-06 25.7 0.0 0.00076 19.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|313125135|ref|YP_004035399.1| - 0.00013 21.6 0.0 0.00024 20.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313125135|ref|YP_004035399.1| - 0.00047 20.7 0.0 0.00071 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313125135|ref|YP_004035399.1| - 0.00067 20.1 0.0 0.0013 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313125135|ref|YP_004035399.1| - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|313125135|ref|YP_004035399.1| - 0.0019 17.8 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313125135|ref|YP_004035399.1| - 0.0022 17.3 0.0 0.0035 16.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|313125135|ref|YP_004035399.1| - 0.0052 16.5 0.0 0.011 15.4 0.0 1.4 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|313125135|ref|YP_004035399.1| - 0.018 15.2 0.1 0.41 10.9 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|313125135|ref|YP_004035399.1| - 0.021 15.1 0.0 0.045 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|313125135|ref|YP_004035399.1| - 0.055 13.4 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.20 gi|313125135|ref|YP_004035399.1| - 0.066 13.1 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase cobW PF02492.19 gi|313125135|ref|YP_004035399.1| - 0.067 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF4350 PF14258.6 gi|313125135|ref|YP_004035399.1| - 0.067 13.6 0.0 0.18 12.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) MukB PF04310.12 gi|313125135|ref|YP_004035399.1| - 0.19 11.5 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal TniB PF05621.11 gi|313125135|ref|YP_004035399.1| - 0.24 10.8 0.0 2.2 7.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein HTH_10 PF04967.12 gi|313125136|ref|YP_004035400.1| - 3.7e-17 61.9 0.1 5.8e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|313125136|ref|YP_004035400.1| - 3.7e-06 26.5 1.0 8e-05 22.2 1.0 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|313125136|ref|YP_004035400.1| - 0.0017 17.8 1.2 0.0041 16.6 1.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|313125136|ref|YP_004035400.1| - 0.0026 17.9 0.0 0.005 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Lipoprotein_20 PF13942.6 gi|313125136|ref|YP_004035400.1| - 0.0078 16.2 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 YfhG lipoprotein HTH_5 PF01022.20 gi|313125136|ref|YP_004035400.1| - 0.013 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|313125136|ref|YP_004035400.1| - 0.026 14.1 0.1 0.41 10.2 0.1 2.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|313125136|ref|YP_004035400.1| - 0.035 14.2 0.2 0.074 13.1 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|313125136|ref|YP_004035400.1| - 0.045 13.3 0.1 0.076 12.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Coat_F PF07875.12 gi|313125136|ref|YP_004035400.1| - 0.058 13.6 0.0 0.18 12.1 0.0 1.8 2 0 0 2 2 2 0 Coat F domain Mga PF05043.13 gi|313125136|ref|YP_004035400.1| - 0.085 13.4 0.0 0.19 12.3 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|313125136|ref|YP_004035400.1| - 0.086 12.6 0.5 0.46 10.3 0.5 2.1 1 1 0 1 1 1 0 LexA DNA binding domain TetR_N PF00440.23 gi|313125136|ref|YP_004035400.1| - 0.11 12.4 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Gate PF07670.14 gi|313125137|ref|YP_004035401.1| - 3.6e-06 27.2 2.3 3.6e-06 27.2 2.3 3.8 5 0 0 5 5 5 2 Nucleoside recognition Nucleos_tra2_C PF07662.13 gi|313125137|ref|YP_004035401.1| - 0.011 15.6 1.8 0.011 15.6 1.8 2.6 2 1 1 3 3 3 0 Na+ dependent nucleoside transporter C-terminus HTH_AsnC-type PF13404.6 gi|313125139|ref|YP_004035403.1| - 1.8e-14 53.3 1.4 3e-14 52.6 1.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|313125139|ref|YP_004035403.1| - 5e-13 48.4 0.4 9.9e-13 47.4 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|313125139|ref|YP_004035403.1| - 1.6e-09 37.6 0.1 2.6e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|313125139|ref|YP_004035403.1| - 0.00064 19.6 0.1 0.0013 18.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|313125139|ref|YP_004035403.1| - 0.00087 19.3 0.1 0.0017 18.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313125139|ref|YP_004035403.1| - 0.0044 17.0 1.0 0.01 15.8 1.0 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|313125139|ref|YP_004035403.1| - 0.0053 16.6 0.2 0.0093 15.8 0.2 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313125139|ref|YP_004035403.1| - 0.013 15.4 0.1 0.04 13.8 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313125139|ref|YP_004035403.1| - 0.059 13.2 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|313125139|ref|YP_004035403.1| - 0.06 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 MarR family EF-hand_5 PF13202.6 gi|313125139|ref|YP_004035403.1| - 0.066 12.7 0.1 0.18 11.4 0.1 1.7 1 0 0 1 1 1 0 EF hand HTH_10 PF04967.12 gi|313125141|ref|YP_004035405.1| - 1.8e-20 72.5 0.1 3.2e-20 71.7 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313125141|ref|YP_004035405.1| - 0.053 13.4 0.1 0.13 12.1 0.1 1.6 1 1 0 1 1 1 0 GAF and HTH_10 associated domain HTH_8 PF02954.19 gi|313125141|ref|YP_004035405.1| - 0.064 13.1 0.0 0.48 10.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.16 gi|313125141|ref|YP_004035405.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|313125141|ref|YP_004035405.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.27 gi|313125142|ref|YP_004035406.1| - 5.6e-30 104.7 0.0 9.9e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125142|ref|YP_004035406.1| - 1.6e-14 54.4 0.1 1.4e-08 34.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313125142|ref|YP_004035406.1| - 4.8e-06 27.2 0.0 1.5e-05 25.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.29 gi|313125142|ref|YP_004035406.1| - 0.00044 20.7 0.0 0.0039 17.6 0.0 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|313125142|ref|YP_004035406.1| - 0.0028 17.3 0.0 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|313125142|ref|YP_004035406.1| - 0.0059 16.3 0.2 0.014 15.1 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain A_amylase_inhib PF01356.19 gi|313125142|ref|YP_004035406.1| - 0.0087 16.0 0.1 0.49 10.4 0.1 2.4 2 0 0 2 2 2 1 Alpha amylase inhibitor AAA_16 PF13191.6 gi|313125142|ref|YP_004035406.1| - 0.01 16.2 0.2 0.048 14.0 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|313125142|ref|YP_004035406.1| - 0.016 15.0 0.3 0.087 12.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain KdpD PF02702.17 gi|313125142|ref|YP_004035406.1| - 0.017 14.6 0.0 0.037 13.5 0.0 1.6 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_15 PF13175.6 gi|313125142|ref|YP_004035406.1| - 0.018 14.7 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 gi|313125142|ref|YP_004035406.1| - 0.02 14.3 0.0 0.8 9.1 0.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|313125142|ref|YP_004035406.1| - 0.023 15.2 0.1 0.039 14.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313125142|ref|YP_004035406.1| - 0.028 15.0 0.3 0.47 11.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|313125142|ref|YP_004035406.1| - 0.038 14.3 0.0 0.2 11.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|313125142|ref|YP_004035406.1| - 0.044 13.5 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase Rad17 PF03215.15 gi|313125142|ref|YP_004035406.1| - 0.065 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|313125142|ref|YP_004035406.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC2_membrane PF01061.24 gi|313125143|ref|YP_004035407.1| - 5.6e-30 104.3 17.9 8.1e-30 103.8 17.9 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|313125143|ref|YP_004035407.1| - 1.7e-11 43.8 21.5 1.7e-11 43.8 21.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CPP1-like PF11833.8 gi|313125143|ref|YP_004035407.1| - 3.1 7.4 8.7 3.4 7.3 7.3 1.8 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Methyltransf_25 PF13649.6 gi|313125144|ref|YP_004035408.1| - 1.6e-10 41.5 0.1 4.2e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|313125144|ref|YP_004035408.1| - 2.2e-10 40.3 0.0 2.4e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|313125144|ref|YP_004035408.1| - 4e-10 39.8 0.0 5.8e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313125144|ref|YP_004035408.1| - 1.1e-08 35.5 0.1 2.6e-08 34.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313125144|ref|YP_004035408.1| - 2.2e-06 27.2 0.0 2.9e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|313125144|ref|YP_004035408.1| - 3.5e-06 26.9 0.0 4.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125144|ref|YP_004035408.1| - 3.4e-05 24.5 0.1 0.00011 22.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|313125144|ref|YP_004035408.1| - 0.00029 20.5 0.0 0.00036 20.1 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|313125144|ref|YP_004035408.1| - 0.00038 20.0 0.0 0.00057 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|313125144|ref|YP_004035408.1| - 0.0006 19.5 0.0 0.00073 19.3 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DUF938 PF06080.12 gi|313125144|ref|YP_004035408.1| - 0.058 13.2 0.0 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) NifU PF01106.17 gi|313125145|ref|YP_004035409.1| - 1.5e-12 47.5 0.0 2e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain HTH_DeoR PF08220.12 gi|313125145|ref|YP_004035409.1| - 0.054 13.3 0.3 29 4.5 0.1 3.0 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313125146|ref|YP_004035410.1| - 7.7e-10 38.8 0.0 1.6e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|313125146|ref|YP_004035410.1| - 0.0002 21.4 0.0 0.00034 20.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|313125146|ref|YP_004035410.1| - 0.11 12.5 0.0 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|313125146|ref|YP_004035410.1| - 0.16 11.9 0.0 0.52 10.3 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain GATase PF00117.28 gi|313125148|ref|YP_004035412.1| - 1.4e-19 70.6 0.0 2e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313125148|ref|YP_004035412.1| - 7e-12 45.6 1.0 1e-09 38.5 1.0 2.5 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|313125148|ref|YP_004035412.1| - 0.062 12.9 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain peroxidase PF00141.23 gi|313125149|ref|YP_004035413.1| - 5.2e-85 284.8 0.0 1.5e-46 158.9 0.0 2.2 2 0 0 2 2 2 2 Peroxidase STI1 PF17830.1 gi|313125149|ref|YP_004035413.1| - 0.041 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 STI1 domain HTH_20 PF12840.7 gi|313125151|ref|YP_004035415.1| - 0.0021 18.1 0.0 0.0031 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313125151|ref|YP_004035415.1| - 0.0033 17.4 0.0 0.0047 16.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|313125151|ref|YP_004035415.1| - 0.0097 16.2 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor Rrf2 PF02082.20 gi|313125151|ref|YP_004035415.1| - 0.022 15.1 0.0 0.032 14.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|313125151|ref|YP_004035415.1| - 0.035 13.8 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Phage_rep_org_N PF09681.10 gi|313125151|ref|YP_004035415.1| - 0.093 12.7 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Fe_dep_repress PF01325.19 gi|313125151|ref|YP_004035415.1| - 0.1 12.8 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|313125151|ref|YP_004035415.1| - 0.11 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR_2 PF12802.7 gi|313125151|ref|YP_004035415.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|313125151|ref|YP_004035415.1| - 0.19 11.4 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1495 PF07381.11 gi|313125151|ref|YP_004035415.1| - 0.22 11.4 0.0 0.32 10.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MatE PF01554.18 gi|313125152|ref|YP_004035416.1| - 3.3e-60 202.4 35.9 3.5e-31 108.0 15.5 2.7 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|313125152|ref|YP_004035416.1| - 8.9e-07 29.1 12.1 8.9e-07 29.1 12.1 5.1 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Fer2 PF00111.27 gi|313125153|ref|YP_004035417.1| - 1.1e-13 50.9 0.8 2.2e-13 50.0 0.8 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_2 PF03446.15 gi|313125155|ref|YP_004035419.1| - 2.4e-38 131.8 0.1 3.4e-38 131.3 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|313125155|ref|YP_004035419.1| - 1.3e-23 83.8 0.0 1.7e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|313125155|ref|YP_004035419.1| - 1.9e-05 25.1 0.0 3.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|313125155|ref|YP_004035419.1| - 5.9e-05 23.0 0.1 9e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|313125155|ref|YP_004035419.1| - 0.00016 21.1 0.0 0.00023 20.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|313125155|ref|YP_004035419.1| - 0.00018 21.7 0.2 0.00049 20.4 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_11 PF14833.6 gi|313125155|ref|YP_004035419.1| - 0.00035 20.8 0.2 0.011 16.0 0.0 2.8 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_10 PF13460.6 gi|313125155|ref|YP_004035419.1| - 0.017 15.0 0.7 2.3 8.1 0.0 2.8 3 0 0 3 3 3 0 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|313125155|ref|YP_004035419.1| - 0.022 14.3 0.0 0.059 12.9 0.1 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|313125155|ref|YP_004035419.1| - 0.024 14.9 0.3 0.26 11.6 0.3 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|313125155|ref|YP_004035419.1| - 0.045 13.9 1.0 0.12 12.5 1.0 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.16 gi|313125155|ref|YP_004035419.1| - 0.17 11.5 0.1 0.5 10.0 0.1 1.9 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CBS PF00571.28 gi|313125156|ref|YP_004035420.1| - 2.9e-13 50.1 5.6 1e-07 32.3 0.5 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_M29 PF02073.15 gi|313125157|ref|YP_004035421.1| - 2.6e-58 197.7 0.0 3e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) 3HCDH_RFF PF18321.1 gi|313125157|ref|YP_004035421.1| - 0.072 13.5 0.8 0.39 11.2 0.1 2.6 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Ribosomal_S6e PF01092.19 gi|313125158|ref|YP_004035422.1| - 3.2e-40 137.0 0.1 3.8e-40 136.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e zf-ribbon_3 PF13248.6 gi|313125161|ref|YP_004035425.1| - 0.003 16.9 1.6 0.54 9.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|313125161|ref|YP_004035425.1| - 0.0036 17.0 0.9 0.69 9.7 0.1 2.2 2 1 0 2 2 2 2 zinc-ribbon domain zf-IS66 PF13005.7 gi|313125161|ref|YP_004035425.1| - 0.0039 17.6 0.4 0.61 10.5 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Rubredoxin_2 PF18073.1 gi|313125161|ref|YP_004035425.1| - 0.0059 16.3 2.9 0.62 9.8 0.2 2.2 2 0 0 2 2 2 2 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|313125161|ref|YP_004035425.1| - 0.0098 15.8 0.4 0.017 15.1 0.4 1.3 1 1 0 1 1 1 1 Transposase zinc-ribbon domain HalOD2 PF18547.1 gi|313125161|ref|YP_004035425.1| - 0.011 15.7 4.4 0.093 12.6 0.6 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 Desulfoferrod_N PF06397.12 gi|313125161|ref|YP_004035425.1| - 0.011 15.3 1.0 0.15 11.7 0.1 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-TFIIB PF13453.6 gi|313125161|ref|YP_004035425.1| - 0.013 14.8 0.3 0.024 14.0 0.3 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF3268 PF11672.8 gi|313125161|ref|YP_004035425.1| - 0.015 15.6 0.1 0.016 15.6 0.1 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain YhfH PF14149.6 gi|313125161|ref|YP_004035425.1| - 0.015 15.3 2.4 0.29 11.2 0.3 2.1 2 0 0 2 2 2 0 YhfH-like protein Nudix_N_2 PF14803.6 gi|313125161|ref|YP_004035425.1| - 0.016 15.1 0.7 2.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Nudix N-terminal VATC PF18716.1 gi|313125161|ref|YP_004035425.1| - 0.018 14.9 0.9 0.63 9.9 0.1 2.1 2 0 0 2 2 2 0 Vms1-associating treble clef domain DZR PF12773.7 gi|313125161|ref|YP_004035425.1| - 0.019 15.0 0.4 0.033 14.2 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|313125161|ref|YP_004035425.1| - 0.035 14.2 1.0 0.14 12.3 1.0 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-tcix PF14952.6 gi|313125161|ref|YP_004035425.1| - 0.11 12.1 1.5 3 7.5 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Pox_A3L PF05288.11 gi|313125161|ref|YP_004035425.1| - 0.15 12.1 0.5 0.21 11.6 0.0 1.4 2 0 0 2 2 2 0 Poxvirus A3L Protein ADK_lid PF05191.14 gi|313125161|ref|YP_004035425.1| - 0.22 11.5 1.5 4.7 7.3 0.2 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid DHHA1 PF02272.19 gi|313125162|ref|YP_004035426.1| - 0.019 15.4 1.8 0.03 14.7 0.5 2.1 2 1 0 2 2 2 0 DHHA1 domain Usp PF00582.26 gi|313125163|ref|YP_004035427.1| - 2.9e-35 121.8 3.7 3.3e-35 121.6 3.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|313125163|ref|YP_004035427.1| - 0.0027 17.7 0.1 0.0036 17.3 0.1 1.1 1 0 0 1 1 1 1 DNA photolyase Pyr_redox_2 PF07992.14 gi|313125163|ref|YP_004035427.1| - 0.049 12.8 0.3 0.066 12.4 0.3 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FliG_C PF01706.16 gi|313125163|ref|YP_004035427.1| - 0.054 13.7 0.3 0.16 12.2 0.4 1.7 2 0 0 2 2 2 0 FliG C-terminal domain DUF3280 PF11684.8 gi|313125163|ref|YP_004035427.1| - 0.086 13.3 0.8 0.49 10.8 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2380) Usp PF00582.26 gi|313125164|ref|YP_004035428.1| - 1.2e-14 55.0 6.4 1.6e-14 54.6 6.4 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|313125164|ref|YP_004035428.1| - 0.0097 15.4 0.4 0.9 8.9 0.3 2.0 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel Acetyltransf_1 PF00583.25 gi|313125165|ref|YP_004035429.1| - 3.2e-16 59.6 0.0 4.1e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313125165|ref|YP_004035429.1| - 2.6e-12 46.8 0.0 3.5e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313125165|ref|YP_004035429.1| - 4.5e-09 36.6 0.0 6.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313125165|ref|YP_004035429.1| - 8.6e-07 28.8 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|313125165|ref|YP_004035429.1| - 1.3e-05 25.9 0.0 1.6e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|313125165|ref|YP_004035429.1| - 0.0073 16.5 0.1 0.01 16.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|313125165|ref|YP_004035429.1| - 0.04 14.0 0.0 2.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313125165|ref|YP_004035429.1| - 0.085 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|313125165|ref|YP_004035429.1| - 0.12 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Usp PF00582.26 gi|313125166|ref|YP_004035430.1| - 6.9e-14 52.6 2.3 7.2e-12 46.0 2.3 2.0 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|313125166|ref|YP_004035430.1| - 0.0017 17.9 0.0 0.003 17.2 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Pneumo_ncap PF03246.13 gi|313125166|ref|YP_004035430.1| - 0.071 11.9 0.0 0.084 11.6 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein PIG-L PF02585.17 gi|313125166|ref|YP_004035430.1| - 0.12 13.0 0.2 0.16 12.6 0.2 1.1 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase ABC_tran PF00005.27 gi|313125169|ref|YP_004035433.1| - 3.8e-57 192.6 0.0 2.1e-29 102.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|313125169|ref|YP_004035433.1| - 1.6e-40 137.4 0.9 4.5e-21 75.1 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313125169|ref|YP_004035433.1| - 4.6e-11 43.1 3.9 1.1e-05 25.4 0.0 3.8 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313125169|ref|YP_004035433.1| - 2.3e-06 27.2 0.1 0.086 12.3 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313125169|ref|YP_004035433.1| - 1.5e-05 25.3 2.9 0.023 15.0 0.2 3.7 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|313125169|ref|YP_004035433.1| - 2e-05 25.0 0.1 0.043 14.2 0.0 2.9 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|313125169|ref|YP_004035433.1| - 0.0001 22.0 1.3 0.21 11.3 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|313125169|ref|YP_004035433.1| - 0.0006 19.8 0.2 0.77 9.8 0.1 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|313125169|ref|YP_004035433.1| - 0.0048 16.4 0.3 3.5 7.1 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|313125169|ref|YP_004035433.1| - 0.013 15.1 0.7 8.1 6.0 0.0 4.0 4 0 0 4 4 4 0 AAA domain RsgA_GTPase PF03193.16 gi|313125169|ref|YP_004035433.1| - 0.027 14.4 0.5 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase AIG1 PF04548.16 gi|313125169|ref|YP_004035433.1| - 0.033 13.5 3.6 0.22 10.8 0.1 2.3 2 0 0 2 2 2 0 AIG1 family ATP-synt_ab PF00006.25 gi|313125169|ref|YP_004035433.1| - 0.033 13.8 0.1 1.1 8.9 0.0 2.6 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|313125169|ref|YP_004035433.1| - 0.04 13.6 0.5 10 5.8 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|313125169|ref|YP_004035433.1| - 0.046 14.1 0.8 0.87 10.0 0.0 3.3 4 1 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|313125169|ref|YP_004035433.1| - 0.08 12.7 0.4 0.74 9.5 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.17 gi|313125169|ref|YP_004035433.1| - 0.17 11.6 0.0 8.4 6.1 0.0 2.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|313125169|ref|YP_004035433.1| - 0.29 10.8 1.5 34 4.1 0.1 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain ATPase PF06745.13 gi|313125169|ref|YP_004035433.1| - 0.37 10.1 1.1 23 4.2 0.1 2.5 2 0 0 2 2 2 0 KaiC TniB PF05621.11 gi|313125169|ref|YP_004035433.1| - 0.75 9.2 2.2 4.3 6.7 0.0 3.0 4 0 0 4 4 4 0 Bacterial TniB protein NB-ARC PF00931.22 gi|313125169|ref|YP_004035433.1| - 1.1 8.4 3.0 8.5 5.5 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain Hpr_kinase_C PF07475.12 gi|313125169|ref|YP_004035433.1| - 1.4 8.4 4.3 13 5.3 0.2 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF87 PF01935.17 gi|313125169|ref|YP_004035433.1| - 1.7 8.7 3.8 18 5.3 0.1 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain SBP_bac_5 PF00496.22 gi|313125170|ref|YP_004035434.1| - 1.4e-94 317.2 4.1 2.7e-94 316.2 4.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313125170|ref|YP_004035434.1| - 2.5e-06 27.1 7.0 4.2e-06 26.4 7.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|313125170|ref|YP_004035434.1| - 0.24 10.8 2.0 0.41 10.0 2.0 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|313125171|ref|YP_004035435.1| - 1.9e-36 125.5 12.6 3.2e-36 124.8 12.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313125172|ref|YP_004035436.1| - 1.3e-33 116.3 4.9 1.3e-33 116.3 4.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313125172|ref|YP_004035436.1| - 0.00057 19.8 0.8 0.00057 19.8 0.8 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Aph-1 PF06105.12 gi|313125173|ref|YP_004035437.1| - 0.038 13.4 0.1 0.054 12.9 0.1 1.3 1 0 0 1 1 1 0 Aph-1 protein DUF1772 PF08592.11 gi|313125173|ref|YP_004035437.1| - 0.042 14.2 1.0 0.069 13.5 1.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Pam17 PF08566.10 gi|313125173|ref|YP_004035437.1| - 0.22 11.4 0.2 0.25 11.2 0.2 1.3 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 CbtA PF09490.10 gi|313125173|ref|YP_004035437.1| - 0.58 9.9 8.7 2.5 7.8 3.0 2.0 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtA) DUF3464 PF11947.8 gi|313125173|ref|YP_004035437.1| - 0.85 9.4 3.7 0.74 9.6 2.7 1.4 1 1 0 1 1 1 0 Photosynthesis affected mutant 68 OrfB_Zn_ribbon PF07282.11 gi|313125174|ref|YP_004035438.1| - 3.8e-23 81.2 1.8 8e-23 80.2 1.8 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313125174|ref|YP_004035438.1| - 8.3e-21 74.4 0.0 2.7e-20 72.8 0.0 1.8 2 0 0 2 2 2 1 Probable transposase C1_2 PF03107.16 gi|313125174|ref|YP_004035438.1| - 0.0038 17.5 1.6 0.01 16.2 1.6 1.7 1 0 0 1 1 1 1 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|313125174|ref|YP_004035438.1| - 0.085 12.8 3.8 0.23 11.5 3.8 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|313125174|ref|YP_004035438.1| - 0.12 12.5 2.9 0.096 12.8 0.7 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family Amidohydro_1 PF01979.20 gi|313125175|ref|YP_004035439.1| - 1.3e-21 77.3 0.0 1.1e-20 74.3 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313125175|ref|YP_004035439.1| - 4.2e-15 56.2 4.9 1.3e-06 28.2 0.0 3.2 3 0 0 3 3 3 3 Amidohydrolase family DHOase PF12890.7 gi|313125175|ref|YP_004035439.1| - 0.017 15.0 0.1 0.063 13.2 0.1 1.9 1 1 0 1 1 1 0 Dihydro-orotase-like BPL_LplA_LipB PF03099.19 gi|313125176|ref|YP_004035440.1| - 0.00092 19.1 0.0 0.0014 18.6 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.22 gi|313125177|ref|YP_004035441.1| - 7.2e-05 22.9 0.0 0.00016 21.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M23 4HBT PF03061.22 gi|313125178|ref|YP_004035442.1| - 2.3e-12 47.1 0.2 3.7e-12 46.4 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|313125178|ref|YP_004035442.1| - 7.4e-08 32.6 0.0 9.3e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|313125178|ref|YP_004035442.1| - 0.0065 16.7 0.2 0.0082 16.4 0.2 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Docking PF08990.11 gi|313125178|ref|YP_004035442.1| - 0.056 13.1 0.2 0.12 12.0 0.2 1.6 1 0 0 1 1 1 0 Erythronolide synthase docking D-ser_dehydrat PF14031.6 gi|313125178|ref|YP_004035442.1| - 0.056 14.1 0.0 1.4 9.6 0.0 2.2 2 0 0 2 2 2 0 Putative serine dehydratase domain SBP_bac_8 PF13416.6 gi|313125178|ref|YP_004035442.1| - 0.088 12.6 0.0 0.096 12.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Isochorismatase PF00857.20 gi|313125179|ref|YP_004035443.1| - 1.4e-50 171.9 0.7 1.6e-50 171.7 0.7 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M91 PF14891.6 gi|313125180|ref|YP_004035444.1| - 0.074 13.4 0.2 0.15 12.3 0.2 1.5 1 0 0 1 1 1 0 Effector protein Peptidase_M78 PF06114.13 gi|313125181|ref|YP_004035445.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 IrrE N-terminal-like domain DUF4157 PF13699.6 gi|313125181|ref|YP_004035445.1| - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.9 gi|313125181|ref|YP_004035445.1| - 0.21 11.3 0.0 0.31 10.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family PLRV_ORF5 PF01690.17 gi|313125182|ref|YP_004035446.1| - 0.029 13.1 6.7 0.039 12.7 6.7 1.3 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein DEC-1_N PF04625.13 gi|313125182|ref|YP_004035446.1| - 0.043 12.8 3.1 0.044 12.8 3.1 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region TALPID3 PF15324.6 gi|313125182|ref|YP_004035446.1| - 1.2 6.7 9.0 1.3 6.6 9.0 1.1 1 0 0 1 1 1 0 Hedgehog signalling target QRPTase_C PF01729.19 gi|313125183|ref|YP_004035447.1| - 3.3e-18 66.0 0.0 4.6e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|313125183|ref|YP_004035447.1| - 0.024 14.7 0.0 0.092 12.8 0.0 2.0 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain AMMECR1 PF01871.17 gi|313125184|ref|YP_004035448.1| - 2.5e-41 141.1 0.0 2.9e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DUF5549 PF17703.1 gi|313125184|ref|YP_004035448.1| - 0.15 11.7 0.2 0.21 11.2 0.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5549) E1-E2_ATPase PF00122.20 gi|313125185|ref|YP_004035449.1| - 3.9e-51 173.1 0.6 9.8e-51 171.8 0.6 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|313125185|ref|YP_004035449.1| - 5.2e-43 147.8 3.9 5.2e-43 147.8 3.9 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|313125185|ref|YP_004035449.1| - 8e-24 83.9 1.6 6.7e-12 45.7 0.0 4.0 5 0 0 5 5 5 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|313125185|ref|YP_004035449.1| - 0.001 18.9 0.4 0.0021 17.8 0.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313125185|ref|YP_004035449.1| - 0.003 18.0 0.2 0.024 15.0 0.2 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase CT_C_D PF02682.16 gi|313125185|ref|YP_004035449.1| - 0.013 15.3 0.0 1.6 8.4 0.0 2.6 1 1 0 2 2 2 0 Carboxyltransferase domain, subdomain C and D Peptidase_M10 PF00413.24 gi|313125186|ref|YP_004035450.1| - 1.8e-09 37.6 0.0 1.2e-05 25.2 0.0 2.2 1 1 1 2 2 2 2 Matrixin Reprolysin_3 PF13582.6 gi|313125186|ref|YP_004035450.1| - 0.00014 22.4 0.0 0.0048 17.4 0.0 2.3 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|313125186|ref|YP_004035450.1| - 0.00019 21.7 0.1 0.00075 19.7 0.0 1.9 2 0 0 2 2 2 1 Metallo-peptidase family M12 Reprolysin_2 PF13574.6 gi|313125186|ref|YP_004035450.1| - 0.014 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.24 gi|313125186|ref|YP_004035450.1| - 0.015 14.9 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Reprolysin_4 PF13583.6 gi|313125186|ref|YP_004035450.1| - 0.03 14.0 0.0 0.075 12.7 0.0 1.7 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|313125186|ref|YP_004035450.1| - 0.037 13.3 0.0 0.083 12.1 0.0 1.5 1 0 0 1 1 1 0 Met-zincin LPAM_1 PF08139.12 gi|313125186|ref|YP_004035450.1| - 0.1 13.2 0.4 0.22 12.1 0.4 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Peptidase_M57 PF12388.8 gi|313125186|ref|YP_004035450.1| - 0.15 11.6 2.0 0.5 9.9 0.1 2.4 3 0 0 3 3 3 0 Dual-action HEIGH metallo-peptidase Peptidase_M66 PF10462.9 gi|313125186|ref|YP_004035450.1| - 0.17 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Ank_4 PF13637.6 gi|313125187|ref|YP_004035451.1| - 1.8e-26 92.2 0.1 1.6e-11 44.5 0.1 4.1 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank_2 PF12796.7 gi|313125187|ref|YP_004035451.1| - 2e-20 73.2 0.0 1.8e-10 41.3 0.0 2.4 1 1 1 2 2 2 2 Ankyrin repeats (3 copies) Ank_5 PF13857.6 gi|313125187|ref|YP_004035451.1| - 2e-18 66.2 0.0 1.2e-08 35.0 0.0 3.1 2 1 1 3 3 3 3 Ankyrin repeats (many copies) Ank PF00023.30 gi|313125187|ref|YP_004035451.1| - 5.6e-15 55.0 0.0 3e-06 27.4 0.0 3.7 4 0 0 4 4 4 3 Ankyrin repeat Ank_3 PF13606.6 gi|313125187|ref|YP_004035451.1| - 6.7e-14 50.7 0.0 0.00044 20.5 0.0 4.0 4 0 0 4 4 4 3 Ankyrin repeat BAT PF15915.5 gi|313125187|ref|YP_004035451.1| - 0.0039 17.1 0.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 2 GAF and HTH_10 associated domain DUF4157 PF13699.6 gi|313125188|ref|YP_004035452.1| - 9.1e-31 105.9 0.8 1.5e-30 105.2 0.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) GH-E PF14410.6 gi|313125188|ref|YP_004035452.1| - 1.2e-27 96.1 3.9 1.2e-27 96.1 3.9 2.4 2 0 0 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues SHOCT PF09851.9 gi|313125188|ref|YP_004035452.1| - 0.06 13.1 0.3 0.06 13.1 0.3 1.8 2 0 0 2 2 2 0 Short C-terminal domain YnfE PF17452.2 gi|313125189|ref|YP_004035453.1| - 0.039 14.2 1.0 1.7 9.0 0.1 2.7 3 0 0 3 3 3 0 Uncharacterized YnfE-like Cupredoxin_1 PF13473.6 gi|313125190|ref|YP_004035454.1| - 0.072 13.2 0.1 0.33 11.1 0.1 2.0 1 1 0 1 1 1 0 Cupredoxin-like domain PIN_9 PF18477.1 gi|313125191|ref|YP_004035455.1| - 0.0031 17.8 0.1 0.005 17.1 0.1 1.4 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|313125191|ref|YP_004035455.1| - 0.058 13.7 0.0 0.082 13.2 0.0 1.3 1 0 0 1 1 1 0 PIN domain PSK_trans_fac PF07704.11 gi|313125192|ref|YP_004035456.1| - 0.0043 17.8 3.8 0.011 16.5 3.8 1.7 1 1 0 1 1 1 1 Rv0623-like transcription factor Ank_2 PF12796.7 gi|313125197|ref|YP_004035461.1| - 5.2e-20 71.8 0.0 4.8e-13 49.5 0.1 2.6 1 1 1 2 2 2 2 Ankyrin repeats (3 copies) Ank_5 PF13857.6 gi|313125197|ref|YP_004035461.1| - 1.7e-19 69.6 0.1 5e-09 36.3 0.2 2.7 2 1 1 3 3 3 2 Ankyrin repeats (many copies) Ank_3 PF13606.6 gi|313125197|ref|YP_004035461.1| - 2e-18 64.6 0.0 3.1e-05 24.0 0.0 4.3 5 0 0 5 5 5 3 Ankyrin repeat Ank_4 PF13637.6 gi|313125197|ref|YP_004035461.1| - 4.7e-18 65.3 0.0 3.6e-08 33.8 0.1 4.1 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank PF00023.30 gi|313125197|ref|YP_004035461.1| - 6.7e-15 54.8 0.9 0.0017 18.7 0.1 4.1 5 0 0 5 5 5 3 Ankyrin repeat DUF4157 PF13699.6 gi|313125198|ref|YP_004035462.1| - 4.3e-30 103.8 1.2 1.2e-29 102.3 1.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) GH-E PF14410.6 gi|313125198|ref|YP_004035462.1| - 1.9e-23 82.7 1.9 2.7e-23 82.1 0.1 2.2 2 0 0 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues Peptidase_M91 PF14891.6 gi|313125198|ref|YP_004035462.1| - 0.032 14.6 3.1 0.066 13.5 2.9 1.8 1 1 0 1 1 1 0 Effector protein YpzI PF14140.6 gi|313125199|ref|YP_004035463.1| - 0.013 15.3 0.1 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 YpzI-like protein HopW1-1 PF15457.6 gi|313125199|ref|YP_004035463.1| - 0.029 13.7 0.0 0.035 13.4 0.0 1.0 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA DUF4404 PF14357.6 gi|313125200|ref|YP_004035464.1| - 0.032 14.9 1.8 0.13 12.9 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Copper-bind PF00127.20 gi|313125201|ref|YP_004035465.1| - 7.6e-13 48.7 0.3 1.5e-12 47.8 0.3 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|313125201|ref|YP_004035465.1| - 0.11 12.4 2.4 0.22 11.4 2.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|313125201|ref|YP_004035465.1| - 0.3 10.5 1.2 0.78 9.1 1.2 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Beta-Casp PF10996.8 gi|313125202|ref|YP_004035466.1| - 1.3e-13 51.2 0.0 2.7e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|313125202|ref|YP_004035466.1| - 6.5e-12 45.2 0.1 2.3e-11 43.4 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|313125202|ref|YP_004035466.1| - 1.3e-06 28.0 0.0 2.2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313125202|ref|YP_004035466.1| - 1.5e-06 28.4 8.3 9e-06 25.8 6.1 2.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313125202|ref|YP_004035466.1| - 1.5e-06 27.9 2.8 2.3e-05 24.0 2.8 2.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|313125202|ref|YP_004035466.1| - 0.012 15.6 0.1 0.044 13.7 0.1 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain RPN1_C PF18051.1 gi|313125202|ref|YP_004035466.1| - 0.029 14.4 0.0 4 7.5 0.0 2.4 2 0 0 2 2 2 0 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal Rhodanese PF00581.20 gi|313125202|ref|YP_004035466.1| - 0.039 14.5 0.0 0.083 13.4 0.0 1.5 1 0 0 1 1 1 0 Rhodanese-like domain AI-2E_transport PF01594.16 gi|313125203|ref|YP_004035467.1| - 4.1e-28 98.5 27.1 5.3e-28 98.1 27.1 1.1 1 0 0 1 1 1 1 AI-2E family transporter TraL PF07178.11 gi|313125203|ref|YP_004035467.1| - 0.4 11.2 4.7 0.45 11.0 1.8 2.7 2 1 0 2 2 2 0 TraL protein CN_hydrolase PF00795.22 gi|313125204|ref|YP_004035468.1| - 3e-57 193.9 0.0 3.3e-57 193.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase FecCD PF01032.18 gi|313125205|ref|YP_004035469.1| - 9.3e-89 297.5 35.5 2.1e-88 296.4 35.5 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|313125205|ref|YP_004035469.1| - 1.9 7.9 24.8 0.067 12.7 18.3 2.0 2 1 0 2 2 2 0 ABC 3 transport family ABC_tran PF00005.27 gi|313125206|ref|YP_004035470.1| - 5.1e-32 111.2 0.0 8.6e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125206|ref|YP_004035470.1| - 1.1e-13 51.7 1.0 1.7e-06 28.1 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313125206|ref|YP_004035470.1| - 9.6e-11 41.5 0.2 1.1e-08 34.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313125206|ref|YP_004035470.1| - 4.9e-07 29.4 0.0 1.3e-06 28.1 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|313125206|ref|YP_004035470.1| - 8.6e-07 28.1 0.0 0.0016 17.3 0.0 2.4 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|313125206|ref|YP_004035470.1| - 5.9e-06 26.2 0.0 9.2e-05 22.3 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|313125206|ref|YP_004035470.1| - 1.5e-05 25.4 0.1 2.7e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|313125206|ref|YP_004035470.1| - 2.6e-05 24.8 0.1 3.7e-05 24.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313125206|ref|YP_004035470.1| - 0.00021 21.6 1.1 0.0011 19.2 1.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|313125206|ref|YP_004035470.1| - 0.0004 20.0 0.5 0.00098 18.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313125206|ref|YP_004035470.1| - 0.00062 19.9 0.5 0.0018 18.5 0.5 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313125206|ref|YP_004035470.1| - 0.0007 19.5 0.1 0.0016 18.3 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase MukB PF04310.12 gi|313125206|ref|YP_004035470.1| - 0.00088 19.1 0.1 0.0018 18.1 0.0 1.6 2 1 0 2 2 1 1 MukB N-terminal MMR_HSR1 PF01926.23 gi|313125206|ref|YP_004035470.1| - 0.0016 18.5 0.8 0.012 15.7 0.8 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase APS_kinase PF01583.20 gi|313125206|ref|YP_004035470.1| - 0.0021 18.0 0.1 0.008 16.1 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_18 PF13238.6 gi|313125206|ref|YP_004035470.1| - 0.0028 18.2 0.0 0.0064 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain HD PF01966.22 gi|313125206|ref|YP_004035470.1| - 0.0033 17.6 0.1 0.0097 16.1 0.0 1.7 2 0 0 2 2 2 1 HD domain AAA_28 PF13521.6 gi|313125206|ref|YP_004035470.1| - 0.0047 17.2 0.1 0.0096 16.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313125206|ref|YP_004035470.1| - 0.005 16.6 0.2 0.012 15.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313125206|ref|YP_004035470.1| - 0.0062 15.8 0.0 0.016 14.5 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin Rad17 PF03215.15 gi|313125206|ref|YP_004035470.1| - 0.0068 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain NACHT PF05729.12 gi|313125206|ref|YP_004035470.1| - 0.0089 16.0 0.1 0.019 14.9 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_14 PF13173.6 gi|313125206|ref|YP_004035470.1| - 0.011 15.8 0.0 0.046 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|313125206|ref|YP_004035470.1| - 0.024 14.0 0.0 0.24 10.8 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF87 PF01935.17 gi|313125206|ref|YP_004035470.1| - 0.026 14.6 0.0 0.046 13.8 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain ATP_bind_1 PF03029.17 gi|313125206|ref|YP_004035470.1| - 0.028 14.2 0.2 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|313125206|ref|YP_004035470.1| - 0.03 14.8 0.1 0.073 13.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|313125206|ref|YP_004035470.1| - 0.031 13.9 0.5 0.1 12.2 0.1 1.9 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|313125206|ref|YP_004035470.1| - 0.038 14.0 0.2 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|313125206|ref|YP_004035470.1| - 0.039 14.3 0.0 0.077 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|313125206|ref|YP_004035470.1| - 0.065 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|313125206|ref|YP_004035470.1| - 0.07 13.0 0.2 0.44 10.4 0.2 2.3 1 1 0 1 1 1 0 NTPase AAA_27 PF13514.6 gi|313125206|ref|YP_004035470.1| - 0.07 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.8 gi|313125206|ref|YP_004035470.1| - 0.089 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Cytidylate_kin PF02224.18 gi|313125206|ref|YP_004035470.1| - 0.09 12.5 0.5 0.21 11.3 0.1 1.7 2 0 0 2 2 2 0 Cytidylate kinase SRP54 PF00448.22 gi|313125206|ref|YP_004035470.1| - 0.09 12.4 0.2 0.19 11.3 0.2 1.8 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain VirE PF05272.11 gi|313125206|ref|YP_004035470.1| - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Virulence-associated protein E TIP49 PF06068.13 gi|313125206|ref|YP_004035470.1| - 0.16 11.1 0.0 0.93 8.6 0.0 1.9 2 0 0 2 2 2 0 TIP49 P-loop domain LRR19-TM PF15176.6 gi|313125207|ref|YP_004035471.1| - 1.2 9.1 0.0 1.2 9.1 0.0 2.0 3 0 0 3 3 3 0 Leucine-rich repeat family 19 TM domain AAA_16 PF13191.6 gi|313125208|ref|YP_004035472.1| - 5.8e-13 49.6 1.3 3.4e-12 47.1 1.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313125208|ref|YP_004035472.1| - 1.1e-09 38.7 0.0 2.9e-09 37.3 0.0 1.8 1 1 1 2 2 2 1 AAA domain TniB PF05621.11 gi|313125208|ref|YP_004035472.1| - 0.00014 21.4 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein HTH_20 PF12840.7 gi|313125208|ref|YP_004035472.1| - 0.00096 19.2 4.8 0.0018 18.3 0.3 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|313125208|ref|YP_004035472.1| - 0.0014 18.4 0.2 0.0036 17.1 0.2 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Sigma54_activ_2 PF14532.6 gi|313125208|ref|YP_004035472.1| - 0.0051 16.9 0.0 0.0096 16.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_IclR PF09339.10 gi|313125208|ref|YP_004035472.1| - 0.014 15.2 1.1 0.025 14.4 0.1 2.0 2 0 0 2 2 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|313125208|ref|YP_004035472.1| - 0.019 14.9 0.2 0.08 12.9 0.0 2.2 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|313125208|ref|YP_004035472.1| - 0.026 14.4 1.7 0.067 13.1 0.3 2.4 2 0 0 2 2 2 0 MarR family RNA_helicase PF00910.22 gi|313125208|ref|YP_004035472.1| - 0.028 14.8 0.0 0.046 14.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|313125208|ref|YP_004035472.1| - 0.039 14.3 0.1 0.087 13.2 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|313125208|ref|YP_004035472.1| - 0.047 13.8 2.7 0.11 12.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain HTH_40 PF14493.6 gi|313125208|ref|YP_004035472.1| - 0.052 14.0 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ATPase_2 PF01637.18 gi|313125208|ref|YP_004035472.1| - 0.055 13.4 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|313125208|ref|YP_004035472.1| - 0.059 12.5 0.0 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|313125208|ref|YP_004035472.1| - 0.082 12.7 0.0 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA PF00004.29 gi|313125208|ref|YP_004035472.1| - 0.093 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|313125208|ref|YP_004035472.1| - 0.094 12.0 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family TrmB PF01978.19 gi|313125208|ref|YP_004035472.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2075 PF09848.9 gi|313125208|ref|YP_004035472.1| - 0.19 10.9 0.0 0.25 10.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RTX PF02382.15 gi|313125209|ref|YP_004035473.1| - 0.00049 19.9 2.4 0.00092 19.0 2.4 1.4 1 0 0 1 1 1 1 N-terminal domain in RTX protein FGGY_N PF00370.21 gi|313125210|ref|YP_004035474.1| - 1.6e-78 263.6 0.0 2.1e-78 263.3 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|313125210|ref|YP_004035474.1| - 3.4e-61 206.4 0.4 5.5e-61 205.8 0.4 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|313125210|ref|YP_004035474.1| - 7.4e-05 22.4 0.2 0.0037 16.8 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Pyr_redox_2 PF07992.14 gi|313125211|ref|YP_004035475.1| - 2.3e-53 181.4 1.1 2.3e-53 181.4 1.1 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313125211|ref|YP_004035475.1| - 1.3e-23 83.3 1.1 8.2e-19 67.9 0.3 4.1 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313125211|ref|YP_004035475.1| - 1.5e-10 40.8 0.0 1.7e-05 24.3 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|313125211|ref|YP_004035475.1| - 1.8e-09 37.8 0.0 9.5e-09 35.5 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.6 gi|313125211|ref|YP_004035475.1| - 2.8e-08 33.9 0.7 0.0013 18.9 0.0 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|313125211|ref|YP_004035475.1| - 4.8e-07 28.8 0.1 0.092 11.4 0.0 3.7 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.18 gi|313125211|ref|YP_004035475.1| - 0.00083 19.3 0.2 0.0014 18.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|313125211|ref|YP_004035475.1| - 0.0022 17.1 9.0 0.92 8.5 0.0 4.2 2 1 2 5 5 5 2 FAD binding domain Amino_oxidase PF01593.24 gi|313125211|ref|YP_004035475.1| - 0.019 14.3 0.7 0.69 9.1 0.1 2.2 1 1 0 2 2 2 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|313125211|ref|YP_004035475.1| - 0.033 13.2 0.1 6.8 5.6 0.0 2.5 2 1 1 3 3 3 0 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|313125211|ref|YP_004035475.1| - 0.037 13.4 0.7 0.68 9.2 0.0 2.5 2 1 1 3 3 3 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|313125211|ref|YP_004035475.1| - 0.073 13.5 0.5 0.33 11.4 0.2 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|313125211|ref|YP_004035475.1| - 0.094 11.9 0.0 2.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|313125211|ref|YP_004035475.1| - 0.2 11.2 0.4 1.2 8.7 0.1 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|313125211|ref|YP_004035475.1| - 0.42 10.6 3.4 15 5.5 0.0 3.0 2 1 1 3 3 3 0 FAD-NAD(P)-binding Arch_flagellin PF01917.16 gi|313125212|ref|YP_004035476.1| - 7.7e-29 101.0 4.1 9.1e-29 100.8 4.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin HTH_AsnC-type PF13404.6 gi|313125214|ref|YP_004035478.1| - 1e-16 60.5 0.7 2.1e-16 59.4 0.7 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|313125214|ref|YP_004035478.1| - 7.7e-16 57.4 0.0 1.2e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313125214|ref|YP_004035478.1| - 3.3e-07 30.1 0.0 5e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313125214|ref|YP_004035478.1| - 7.2e-07 29.2 0.1 1.8e-06 27.9 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313125214|ref|YP_004035478.1| - 1.1e-06 28.4 0.1 2.2e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313125214|ref|YP_004035478.1| - 1.3e-05 25.0 0.0 2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 MarR family YHS PF04945.13 gi|313125214|ref|YP_004035478.1| - 6.1e-05 23.0 1.1 0.00011 22.2 1.1 1.3 1 0 0 1 1 1 1 YHS domain HTH_IclR PF09339.10 gi|313125214|ref|YP_004035478.1| - 9.9e-05 22.1 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313125214|ref|YP_004035478.1| - 0.00012 21.4 0.0 0.00049 19.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Arc_trans_TRASH PF08394.10 gi|313125214|ref|YP_004035478.1| - 0.00041 20.6 1.4 0.00064 20.0 1.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain LIM PF00412.22 gi|313125214|ref|YP_004035478.1| - 0.012 15.8 1.5 0.018 15.3 1.5 1.3 1 0 0 1 1 1 0 LIM domain Ta0938 PF11494.8 gi|313125214|ref|YP_004035478.1| - 0.012 15.8 0.9 0.025 14.9 0.9 1.4 1 0 0 1 1 1 0 Ta0938 TrmB PF01978.19 gi|313125214|ref|YP_004035478.1| - 0.018 14.9 0.0 0.073 13.0 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.27 gi|313125214|ref|YP_004035478.1| - 0.021 14.8 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|313125214|ref|YP_004035478.1| - 0.021 15.0 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|313125214|ref|YP_004035478.1| - 0.025 14.5 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|313125214|ref|YP_004035478.1| - 0.031 14.4 0.0 0.085 13.0 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Mga PF08280.11 gi|313125214|ref|YP_004035478.1| - 0.034 14.2 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Rrf2 PF02082.20 gi|313125214|ref|YP_004035478.1| - 0.039 14.3 0.0 0.25 11.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator zf-FCS PF06467.14 gi|313125214|ref|YP_004035478.1| - 0.067 13.1 1.8 0.067 13.1 1.8 1.7 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.8 gi|313125214|ref|YP_004035478.1| - 0.068 13.9 3.5 0.12 13.1 3.5 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_Crp_2 PF13545.6 gi|313125214|ref|YP_004035478.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|313125214|ref|YP_004035478.1| - 0.11 13.0 0.1 0.2 12.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|313125214|ref|YP_004035478.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain REJ PF02010.15 gi|313125215|ref|YP_004035479.1| - 5.2e-05 22.2 2.4 0.045 12.5 0.1 2.2 1 1 1 2 2 2 2 REJ domain Presenilin PF01080.17 gi|313125215|ref|YP_004035479.1| - 0.0026 16.6 8.3 0.048 12.4 1.0 2.1 2 0 0 2 2 2 2 Presenilin Apt1 PF10351.9 gi|313125215|ref|YP_004035479.1| - 4.7 6.0 22.2 2.2 7.1 7.6 2.1 2 0 0 2 2 2 0 Golgi-body localisation protein domain HMA PF00403.26 gi|313125216|ref|YP_004035480.1| - 1.2e-18 67.3 1.0 1.3e-18 67.2 1.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2070 PF09843.9 gi|313125216|ref|YP_004035480.1| - 0.003 15.9 0.1 0.0033 15.8 0.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Methyltransf_25 PF13649.6 gi|313125217|ref|YP_004035481.1| - 1.1e-18 67.7 0.0 1.5e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125217|ref|YP_004035481.1| - 3e-18 66.1 0.0 3.4e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|313125217|ref|YP_004035481.1| - 2.3e-17 63.5 0.0 3.1e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|313125217|ref|YP_004035481.1| - 2e-15 57.2 0.0 3e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125217|ref|YP_004035481.1| - 3.5e-14 53.3 0.0 5e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313125217|ref|YP_004035481.1| - 6.4e-14 51.9 0.0 7.7e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|313125217|ref|YP_004035481.1| - 2.1e-10 40.7 0.0 2.6e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|313125217|ref|YP_004035481.1| - 2e-06 27.3 0.0 2.7e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|313125217|ref|YP_004035481.1| - 6.8e-05 22.6 0.0 0.00021 21.0 0.0 1.7 1 1 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_4 PF02390.17 gi|313125217|ref|YP_004035481.1| - 0.00055 19.4 0.0 0.00094 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|313125217|ref|YP_004035481.1| - 0.00061 19.4 0.0 0.002 17.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.10 gi|313125217|ref|YP_004035481.1| - 0.0012 18.6 0.0 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|313125217|ref|YP_004035481.1| - 0.0026 17.9 0.0 0.01 15.9 0.0 1.6 1 1 1 2 2 2 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|313125217|ref|YP_004035481.1| - 0.079 12.0 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|313125217|ref|YP_004035481.1| - 0.096 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Fibrillarin PF01269.17 gi|313125217|ref|YP_004035481.1| - 0.13 11.3 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin Methyltransf_32 PF13679.6 gi|313125217|ref|YP_004035481.1| - 0.2 11.7 0.0 0.3 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain EcoEI_R_C PF08463.10 gi|313125218|ref|YP_004035482.1| - 0.036 14.2 0.0 0.047 13.8 0.0 1.3 1 0 0 1 1 1 0 EcoEI R protein C-terminal DUF4325 PF14213.6 gi|313125219|ref|YP_004035483.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 STAS-like domain of unknown function (DUF4325) AIM24 PF01987.17 gi|313125220|ref|YP_004035484.1| - 3.6e-43 147.7 0.0 4e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 NIR_SIR PF01077.22 gi|313125221|ref|YP_004035485.1| - 1.9e-41 141.2 0.0 1.9e-31 108.7 0.1 2.5 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|313125221|ref|YP_004035485.1| - 7e-37 125.1 0.0 3.4e-18 65.3 0.0 3.1 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain NifU PF01106.17 gi|313125222|ref|YP_004035486.1| - 0.013 15.6 0.8 0.033 14.3 0.4 1.7 1 1 1 2 2 2 0 NifU-like domain Peptidase_M20 PF01546.28 gi|313125225|ref|YP_004035489.1| - 7.8e-28 97.6 0.7 1e-27 97.2 0.7 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|313125225|ref|YP_004035489.1| - 8.8e-06 25.6 0.0 2.4e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M3 PF01432.20 gi|313125226|ref|YP_004035490.1| - 4.2e-70 237.3 4.3 4.2e-70 237.3 4.3 2.0 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|313125226|ref|YP_004035490.1| - 2.3e-25 88.7 0.3 2.3e-25 88.7 0.3 3.2 2 0 0 2 2 2 1 Oligopeptidase F Phage_ABA_S PF18066.1 gi|313125226|ref|YP_004035490.1| - 0.026 15.2 0.3 4.8 7.9 0.0 2.9 2 0 0 2 2 2 0 Phage ABA sandwich domain MitMem_reg PF13012.6 gi|313125226|ref|YP_004035490.1| - 0.061 13.8 0.8 0.39 11.2 0.1 2.6 3 0 0 3 3 3 0 Maintenance of mitochondrial structure and function zf-ribbon_3 PF13248.6 gi|313125228|ref|YP_004035492.1| - 0.0027 17.1 1.0 0.4 10.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|313125228|ref|YP_004035492.1| - 0.0032 17.4 0.2 0.0052 16.8 0.2 1.3 1 1 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|313125228|ref|YP_004035492.1| - 0.024 14.5 1.3 0.33 10.8 1.3 2.1 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS RecR PF02132.15 gi|313125228|ref|YP_004035492.1| - 0.029 13.9 1.1 0.044 13.3 1.1 1.3 1 1 0 1 1 1 0 RecR protein Nudix_N_2 PF14803.6 gi|313125228|ref|YP_004035492.1| - 0.036 14.0 0.7 0.18 11.8 0.7 2.0 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|313125228|ref|YP_004035492.1| - 0.04 14.0 3.0 0.086 13.0 3.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-ACC PF17848.1 gi|313125228|ref|YP_004035492.1| - 0.12 12.5 4.7 3.7 7.7 0.1 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain PhnA_Zn_Ribbon PF08274.12 gi|313125228|ref|YP_004035492.1| - 1.6 8.8 5.8 16 5.6 5.8 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Peptidase_M28 PF04389.17 gi|313125229|ref|YP_004035493.1| - 3e-34 118.5 0.3 4.3e-34 117.9 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|313125229|ref|YP_004035493.1| - 1.2e-12 47.7 0.3 2.3e-12 46.8 0.3 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|313125229|ref|YP_004035493.1| - 0.00039 20.2 0.3 0.0011 18.8 0.3 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|313125229|ref|YP_004035493.1| - 0.0018 17.4 0.2 0.0029 16.7 0.2 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase HAD_2 PF13419.6 gi|313125231|ref|YP_004035495.1| - 1e-16 61.5 0.0 1.3e-16 61.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125231|ref|YP_004035495.1| - 2.7e-11 44.1 0.5 1.1e-10 42.2 0.5 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125231|ref|YP_004035495.1| - 1.3e-09 38.0 0.0 2.9e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|313125231|ref|YP_004035495.1| - 0.018 15.5 0.8 0.049 14.0 0.8 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|313125231|ref|YP_004035495.1| - 0.024 14.0 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 Putative Phosphatase PseudoU_synth_1 PF01416.20 gi|313125232|ref|YP_004035496.1| - 5e-16 59.1 0.0 2e-12 47.5 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase tRNA-synt_His PF13393.6 gi|313125233|ref|YP_004035497.1| - 1.3e-49 169.2 0.2 1.6e-49 168.9 0.2 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|313125233|ref|YP_004035497.1| - 1.6e-13 50.6 0.1 3.1e-13 49.7 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|313125233|ref|YP_004035497.1| - 1.2e-06 28.6 0.0 2e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) PQQ_2 PF13360.6 gi|313125234|ref|YP_004035498.1| - 2.1e-24 86.4 14.9 8.5e-14 51.7 3.2 2.9 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|313125234|ref|YP_004035498.1| - 3.6e-21 75.0 30.9 1.6e-06 28.4 1.1 7.1 7 0 0 7 7 7 6 PQQ-like domain PQQ PF01011.21 gi|313125234|ref|YP_004035498.1| - 1.2e-15 56.5 14.0 1.8e-06 27.6 0.9 5.3 5 0 0 5 5 5 4 PQQ enzyme repeat EamA PF00892.20 gi|313125235|ref|YP_004035499.1| - 6.7e-29 100.8 23.6 3.7e-17 62.8 9.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|313125235|ref|YP_004035499.1| - 0.051 13.6 0.3 0.051 13.6 0.3 3.0 3 1 0 4 4 4 0 Putative transmembrane family 234 TPT PF03151.16 gi|313125235|ref|YP_004035499.1| - 0.24 10.7 11.2 1.9 7.7 2.4 2.9 2 2 0 2 2 2 0 Triose-phosphate Transporter family PAPS_reduct PF01507.19 gi|313125236|ref|YP_004035500.1| - 0.0014 18.7 0.0 0.002 18.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|313125236|ref|YP_004035500.1| - 0.01 15.5 0.2 0.015 15.0 0.2 1.4 1 1 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|313125236|ref|YP_004035500.1| - 0.062 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|313125236|ref|YP_004035500.1| - 0.15 11.5 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Diphthamide synthase dsDNA_bind PF01984.20 gi|313125237|ref|YP_004035501.1| - 3.4e-26 91.7 13.9 3.8e-26 91.5 13.9 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain RMI1_N PF08585.12 gi|313125237|ref|YP_004035501.1| - 0.0014 18.4 2.9 0.0017 18.2 2.9 1.2 1 0 0 1 1 1 1 RecQ mediated genome instability protein DUF759 PF05537.11 gi|313125237|ref|YP_004035501.1| - 0.085 11.7 3.1 0.093 11.6 3.1 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) FpoO PF10621.9 gi|313125237|ref|YP_004035501.1| - 0.19 12.0 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO FLYWCH_u PF16662.5 gi|313125237|ref|YP_004035501.1| - 0.28 11.3 5.7 0.25 11.4 4.0 1.9 2 0 0 2 2 2 0 FLYWCH-type zinc finger-containing protein 1 DUF4404 PF14357.6 gi|313125237|ref|YP_004035501.1| - 2 9.1 8.8 1.4 9.6 5.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Ribosomal_S19e PF01090.19 gi|313125238|ref|YP_004035502.1| - 4.8e-47 159.1 0.0 5.4e-47 158.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.21 gi|313125238|ref|YP_004035502.1| - 2.7e-05 23.7 0.5 0.0014 18.3 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|313125238|ref|YP_004035502.1| - 0.0008 19.3 0.1 0.0019 18.1 0.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Mrr_N PF14338.6 gi|313125238|ref|YP_004035502.1| - 0.0045 17.1 0.2 0.024 14.8 0.1 1.9 2 0 0 2 2 2 1 Mrr N-terminal domain HTH_45 PF14947.6 gi|313125238|ref|YP_004035502.1| - 0.029 14.3 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix LPG_synthase_TM PF03706.13 gi|313125239|ref|YP_004035503.1| - 1.2e-41 143.2 35.4 1.5e-41 142.9 35.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region AIRS PF00586.24 gi|313125240|ref|YP_004035504.1| - 2.1e-19 69.9 2.8 6.6e-19 68.4 2.8 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|313125240|ref|YP_004035504.1| - 8.2e-09 35.8 0.0 1.5e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Peptidase_M50 PF02163.22 gi|313125241|ref|YP_004035505.1| - 5.4e-15 55.3 6.5 5.6e-07 29.1 2.0 2.4 1 1 1 2 2 2 2 Peptidase family M50 IstB_IS21_ATP PF08483.11 gi|313125242|ref|YP_004035506.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding N-terminal MoaE PF02391.17 gi|313125243|ref|YP_004035507.1| - 1.3e-26 93.1 0.4 2.2e-26 92.3 0.4 1.4 1 0 0 1 1 1 1 MoaE protein AA_kinase PF00696.28 gi|313125244|ref|YP_004035508.1| - 2.1e-23 83.2 6.9 1.2e-22 80.8 6.9 1.8 1 1 0 1 1 1 1 Amino acid kinase family tRNA-synt_1f PF01921.18 gi|313125245|ref|YP_004035509.1| - 2.8e-101 339.0 0.0 3.8e-101 338.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|313125245|ref|YP_004035509.1| - 6.8e-08 31.7 0.0 2.7e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|313125245|ref|YP_004035509.1| - 0.00056 19.4 0.0 0.0052 16.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DUF3833 PF12915.7 gi|313125246|ref|YP_004035510.1| - 0.08 12.5 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3833) DUF1616 PF07760.11 gi|313125247|ref|YP_004035511.1| - 0.073 12.4 0.1 0.073 12.4 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF1467 PF07330.12 gi|313125247|ref|YP_004035511.1| - 0.077 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) MitoNEET_N PF10660.9 gi|313125247|ref|YP_004035511.1| - 0.1 12.6 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus Ank_4 PF13637.6 gi|313125248|ref|YP_004035512.1| - 5.3e-20 71.5 0.1 5.8e-09 36.3 0.0 3.8 1 1 3 4 4 4 4 Ankyrin repeats (many copies) Ank_5 PF13857.6 gi|313125248|ref|YP_004035512.1| - 3.3e-16 59.1 0.1 6e-07 29.6 0.0 3.1 2 1 1 3 3 3 3 Ankyrin repeats (many copies) Ank_2 PF12796.7 gi|313125248|ref|YP_004035512.1| - 2.3e-15 57.0 0.0 2.8e-10 40.6 0.0 2.2 1 1 1 2 2 2 2 Ankyrin repeats (3 copies) Ank PF00023.30 gi|313125248|ref|YP_004035512.1| - 1.1e-13 50.9 0.0 2.5e-05 24.5 0.0 3.5 4 0 0 4 4 4 3 Ankyrin repeat Ank_3 PF13606.6 gi|313125248|ref|YP_004035512.1| - 2.7e-13 48.8 0.0 0.0011 19.3 0.0 3.8 4 0 0 4 4 4 3 Ankyrin repeat Colicin_immun PF09204.10 gi|313125249|ref|YP_004035513.1| - 2e-07 31.4 0.1 2.7e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial self-protective colicin-like immunity P4Ha_N PF08336.11 gi|313125249|ref|YP_004035513.1| - 0.38 10.8 3.0 5 7.1 0.2 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Peptidase_M50 PF02163.22 gi|313125250|ref|YP_004035514.1| - 5.4e-22 78.3 0.0 3.4e-21 75.7 0.0 2.2 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|313125250|ref|YP_004035514.1| - 1.9e-17 63.4 1.0 4.2e-07 30.2 0.0 3.4 1 1 2 3 3 3 2 PDZ domain PDZ_6 PF17820.1 gi|313125250|ref|YP_004035514.1| - 5.7e-09 35.7 1.9 1.3e-07 31.4 0.1 3.3 4 0 0 4 4 4 1 PDZ domain Tricorn_PDZ PF14685.6 gi|313125250|ref|YP_004035514.1| - 6.6e-09 35.6 0.7 0.00011 22.1 0.1 2.9 3 0 0 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.24 gi|313125250|ref|YP_004035514.1| - 3e-05 24.3 0.3 0.00047 20.4 0.0 2.9 2 1 1 3 3 3 1 PDZ domain MBG PF17883.1 gi|313125250|ref|YP_004035514.1| - 0.4 11.3 1.3 0.83 10.3 0.1 2.0 2 0 0 2 2 2 0 MBG domain PadR PF03551.14 gi|313125251|ref|YP_004035515.1| - 6.7e-24 83.7 0.1 1.1e-23 83.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|313125251|ref|YP_004035515.1| - 0.0029 18.2 0.0 0.0046 17.6 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein DUF1007 PF06226.13 gi|313125251|ref|YP_004035515.1| - 0.058 13.4 0.3 0.089 12.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1007) DUF505 PF04458.12 gi|313125251|ref|YP_004035515.1| - 0.24 9.7 0.1 0.31 9.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Chlor_dismutase PF06778.12 gi|313125252|ref|YP_004035516.1| - 2.7e-68 229.4 0.3 4.8e-68 228.6 0.3 1.5 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|313125252|ref|YP_004035516.1| - 1e-07 31.9 0.4 1e-07 31.9 0.4 4.0 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase ATP-synt_D PF01813.17 gi|313125252|ref|YP_004035516.1| - 0.26 11.1 0.0 0.43 10.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase subunit D SHOCT PF09851.9 gi|313125253|ref|YP_004035517.1| - 9.6e-09 34.7 2.9 1.5e-08 34.1 2.9 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|313125253|ref|YP_004035517.1| - 0.00027 21.0 2.5 0.00027 21.0 2.5 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|313125253|ref|YP_004035517.1| - 0.012 15.6 0.7 0.017 15.1 0.7 1.3 1 0 0 1 1 1 0 Gas vesicle protein G Connexin PF00029.19 gi|313125253|ref|YP_004035517.1| - 0.053 13.3 0.0 0.069 12.9 0.0 1.1 1 0 0 1 1 1 0 Connexin DUF4820 PF16091.5 gi|313125253|ref|YP_004035517.1| - 0.059 12.7 0.1 0.078 12.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4820) DUF3288 PF11691.8 gi|313125253|ref|YP_004035517.1| - 0.066 13.3 0.1 0.095 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) GHMP_kinases_N PF00288.26 gi|313125254|ref|YP_004035518.1| - 5.9e-10 39.2 1.7 5.9e-10 39.2 1.7 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain SHOCT PF09851.9 gi|313125255|ref|YP_004035519.1| - 8.3e-08 31.7 3.8 8.3e-08 31.7 3.8 1.9 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.11 gi|313125255|ref|YP_004035519.1| - 1.7e-05 24.8 6.8 2.8e-05 24.1 6.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|313125255|ref|YP_004035519.1| - 0.0021 18.0 1.2 0.0032 17.5 1.2 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF883 PF05957.13 gi|313125255|ref|YP_004035519.1| - 0.0084 16.7 2.2 0.15 12.6 0.0 2.7 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF883) VbhA PF18495.1 gi|313125255|ref|YP_004035519.1| - 0.044 13.7 1.1 0.044 13.7 1.1 2.0 2 0 0 2 2 2 0 Antitoxin VbhA DUF4281 PF14108.6 gi|313125256|ref|YP_004035520.1| - 0.01 16.2 0.1 0.011 16.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4281) Aldo_ket_red PF00248.21 gi|313125257|ref|YP_004035521.1| - 2.9e-49 167.8 0.0 3.4e-49 167.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ETC_C1_NDUFA4 PF04800.12 gi|313125257|ref|YP_004035521.1| - 0.16 12.2 0.1 0.9 9.8 0.0 2.1 2 0 0 2 2 2 0 ETC complex I subunit conserved region Hexapep PF00132.24 gi|313125258|ref|YP_004035522.1| - 5.4e-07 29.1 4.8 0.0025 17.5 0.7 3.3 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313125258|ref|YP_004035522.1| - 0.002 17.9 9.2 0.042 13.6 0.5 3.5 3 2 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase DZR PF12773.7 gi|313125259|ref|YP_004035523.1| - 0.0026 17.7 1.1 0.0034 17.4 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|313125259|ref|YP_004035523.1| - 0.0029 17.2 5.5 0.012 15.3 5.5 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|313125259|ref|YP_004035523.1| - 0.025 14.0 6.8 0.079 12.4 0.9 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|313125259|ref|YP_004035523.1| - 0.028 14.1 1.9 0.054 13.2 1.9 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|313125259|ref|YP_004035523.1| - 0.037 13.9 0.8 0.055 13.4 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain O_anti_polymase PF01901.16 gi|313125260|ref|YP_004035524.1| - 0.021 14.1 0.2 0.024 13.9 0.2 1.0 1 0 0 1 1 1 0 Putative O-antigen polymerase DMT_6 PF04342.12 gi|313125260|ref|YP_004035524.1| - 0.024 14.8 1.9 0.027 14.7 1.9 1.1 1 0 0 1 1 1 0 Putative member of DMT superfamily (DUF486) Nmad3 PF18754.1 gi|313125261|ref|YP_004035525.1| - 3.3e-61 207.0 0.0 3.8e-61 206.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 TAT_signal PF10518.9 gi|313125262|ref|YP_004035526.1| - 0.11 12.4 6.8 0.19 11.6 6.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NAD_synthase PF02540.17 gi|313125263|ref|YP_004035527.1| - 2.9e-82 275.4 0.0 3.4e-82 275.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|313125263|ref|YP_004035527.1| - 4.3e-07 29.0 0.1 0.00019 20.4 0.0 2.2 1 1 1 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|313125263|ref|YP_004035527.1| - 0.00064 19.3 0.0 0.0033 17.0 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|313125263|ref|YP_004035527.1| - 0.0011 18.8 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|313125263|ref|YP_004035527.1| - 0.19 11.5 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 PP-loop family ECH_1 PF00378.20 gi|313125264|ref|YP_004035528.1| - 1.7e-42 145.5 0.0 2.1e-42 145.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313125264|ref|YP_004035528.1| - 5e-26 92.0 0.0 5.8e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase MccV PF17508.2 gi|313125264|ref|YP_004035528.1| - 0.041 14.4 1.5 0.083 13.4 1.5 1.6 1 0 0 1 1 1 0 Microcin V bacteriocin DIMCO_N PF16844.5 gi|313125265|ref|YP_004035529.1| - 0.056 13.8 0.3 0.12 12.7 0.3 1.5 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor, N-terminal YdjM PF04307.14 gi|313125266|ref|YP_004035530.1| - 0.47 9.7 13.6 5.6 6.2 13.7 2.2 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase DUF4233 PF14017.6 gi|313125267|ref|YP_004035531.1| - 0.012 16.0 3.8 0.012 16.0 3.8 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF4233) DUF2238 PF09997.9 gi|313125267|ref|YP_004035531.1| - 0.015 15.1 5.3 0.074 12.8 5.3 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) TrkA_N PF02254.18 gi|313125268|ref|YP_004035532.1| - 6.2e-27 94.2 0.3 8.8e-27 93.7 0.3 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|313125268|ref|YP_004035532.1| - 4.1e-11 42.5 1.0 6.1e-11 42.0 0.3 1.7 2 0 0 2 2 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|313125268|ref|YP_004035532.1| - 2.8e-10 40.1 0.2 4.9e-10 39.3 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|313125268|ref|YP_004035532.1| - 6.2e-07 29.2 0.1 9.6e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|313125268|ref|YP_004035532.1| - 7.3e-07 29.6 0.2 1.1e-06 29.0 0.2 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|313125268|ref|YP_004035532.1| - 4.1e-06 26.5 0.1 6.4e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|313125268|ref|YP_004035532.1| - 7.1e-05 22.8 0.2 0.00011 22.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|313125268|ref|YP_004035532.1| - 8e-05 22.6 0.1 0.00013 22.0 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|313125268|ref|YP_004035532.1| - 0.00011 22.4 0.3 0.00017 21.9 0.3 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|313125268|ref|YP_004035532.1| - 0.00023 20.6 0.2 0.00037 19.9 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|313125268|ref|YP_004035532.1| - 0.00029 21.0 0.0 0.00071 19.8 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.19 gi|313125268|ref|YP_004035532.1| - 0.0004 19.7 0.1 0.00047 19.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|313125268|ref|YP_004035532.1| - 0.00061 20.3 1.0 0.0015 19.0 1.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|313125268|ref|YP_004035532.1| - 0.0025 17.3 0.1 0.0034 16.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family AdoHcyase_NAD PF00670.21 gi|313125268|ref|YP_004035532.1| - 0.0028 17.7 0.1 0.0046 17.0 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|313125268|ref|YP_004035532.1| - 0.0041 16.4 0.9 0.0061 15.9 0.9 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|313125268|ref|YP_004035532.1| - 0.0043 16.3 0.2 0.0043 16.3 0.2 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|313125268|ref|YP_004035532.1| - 0.0046 17.5 0.1 0.0077 16.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|313125268|ref|YP_004035532.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.24 gi|313125268|ref|YP_004035532.1| - 0.012 15.2 0.1 0.023 14.3 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase NmrA PF05368.13 gi|313125268|ref|YP_004035532.1| - 0.016 14.8 0.1 0.022 14.3 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family XdhC_C PF13478.6 gi|313125268|ref|YP_004035532.1| - 0.018 15.5 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|313125268|ref|YP_004035532.1| - 0.066 13.3 0.1 0.097 12.7 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase adh_short_C2 PF13561.6 gi|313125268|ref|YP_004035532.1| - 0.081 12.5 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase ADH_zinc_N PF00107.26 gi|313125268|ref|YP_004035532.1| - 0.11 12.4 0.3 3.5 7.6 0.3 2.3 1 1 0 1 1 1 0 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.22 gi|313125268|ref|YP_004035532.1| - 0.12 13.2 0.1 0.18 12.6 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold HI0933_like PF03486.14 gi|313125268|ref|YP_004035532.1| - 0.21 10.3 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein DUF2118 PF09891.9 gi|313125268|ref|YP_004035532.1| - 0.73 9.8 4.9 5.8 6.9 1.0 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2118) DHDPS PF00701.22 gi|313125269|ref|YP_004035533.1| - 6.3e-62 208.9 0.0 7e-62 208.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HTH_1 PF00126.27 gi|313125270|ref|YP_004035534.1| - 2.2e-10 40.3 1.8 5.5e-10 39.0 1.8 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE PF03459.17 gi|313125270|ref|YP_004035534.1| - 2.4e-10 40.5 1.3 2.4e-10 40.5 1.3 2.7 2 1 0 2 2 2 1 TOBE domain TOBE_2 PF08402.10 gi|313125270|ref|YP_004035534.1| - 0.00049 20.2 1.0 0.00049 20.2 1.0 2.5 2 1 0 2 2 2 1 TOBE domain HTH_24 PF13412.6 gi|313125270|ref|YP_004035534.1| - 0.043 13.4 0.3 0.12 12.0 0.3 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313125270|ref|YP_004035534.1| - 0.49 10.3 3.1 2.7 7.9 3.1 2.4 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain ABC_tran PF00005.27 gi|313125271|ref|YP_004035535.1| - 1.9e-32 112.6 0.0 2.7e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125271|ref|YP_004035535.1| - 2.5e-10 40.7 0.0 0.00053 19.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313125271|ref|YP_004035535.1| - 7.5e-05 23.2 0.9 0.00014 22.2 0.9 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|313125271|ref|YP_004035535.1| - 0.00017 22.2 0.1 0.01 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|313125271|ref|YP_004035535.1| - 0.00024 20.6 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|313125271|ref|YP_004035535.1| - 0.00045 19.9 0.6 0.00084 19.0 0.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|313125271|ref|YP_004035535.1| - 0.0007 19.3 0.0 0.0017 18.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|313125271|ref|YP_004035535.1| - 0.0017 18.7 0.0 0.0026 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313125271|ref|YP_004035535.1| - 0.0023 17.7 1.6 0.025 14.3 1.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313125271|ref|YP_004035535.1| - 0.0023 18.1 0.1 0.0037 17.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|313125271|ref|YP_004035535.1| - 0.0072 16.7 0.0 0.014 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|313125271|ref|YP_004035535.1| - 0.0075 16.5 0.1 0.017 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|313125271|ref|YP_004035535.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|313125271|ref|YP_004035535.1| - 0.018 15.0 0.0 0.043 13.7 0.0 1.6 2 0 0 2 2 2 0 NACHT domain MobB PF03205.14 gi|313125271|ref|YP_004035535.1| - 0.019 14.8 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.6 gi|313125271|ref|YP_004035535.1| - 0.023 14.9 0.1 0.73 10.1 0.1 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|313125271|ref|YP_004035535.1| - 0.034 14.0 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|313125271|ref|YP_004035535.1| - 0.035 13.2 0.0 0.057 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|313125271|ref|YP_004035535.1| - 0.049 14.1 0.0 0.5 10.8 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|313125271|ref|YP_004035535.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|313125271|ref|YP_004035535.1| - 0.09 13.3 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|313125271|ref|YP_004035535.1| - 0.094 12.6 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|313125271|ref|YP_004035535.1| - 0.12 11.6 0.0 0.28 10.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|313125271|ref|YP_004035535.1| - 0.14 12.1 0.1 0.25 11.3 0.0 1.6 1 1 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|313125271|ref|YP_004035535.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|313125271|ref|YP_004035535.1| - 0.18 10.5 0.0 7.8 5.2 0.0 2.4 2 1 1 3 3 3 0 Predicted ATPase of the ABC class Pox_A32 PF04665.12 gi|313125271|ref|YP_004035535.1| - 0.22 11.0 0.0 0.66 9.4 0.0 1.7 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_14 PF13173.6 gi|313125271|ref|YP_004035535.1| - 0.22 11.5 0.0 0.46 10.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_13 PF13166.6 gi|313125271|ref|YP_004035535.1| - 0.26 9.9 0.0 1.1 7.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|313125272|ref|YP_004035536.1| - 8.7e-13 48.4 7.0 1.6e-12 47.6 7.0 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PIN_3 PF13470.6 gi|313125273|ref|YP_004035537.1| - 0.0091 16.8 1.2 0.012 16.4 1.2 1.3 1 1 0 1 1 1 1 PIN domain Ham1p_like PF01725.16 gi|313125274|ref|YP_004035538.1| - 2.4e-48 164.5 0.0 3e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 Ham1 family Pheromone PF08015.11 gi|313125275|ref|YP_004035539.1| - 0.14 13.2 0.0 0.71 10.9 0.0 1.9 2 0 0 2 2 2 0 Fungal mating-type pheromone Peptidase_M22 PF00814.25 gi|313125276|ref|YP_004035540.1| - 5.7e-74 249.2 0.0 7e-74 248.9 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|313125276|ref|YP_004035540.1| - 3.9e-06 27.0 1.2 0.00095 19.2 0.2 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|313125276|ref|YP_004035540.1| - 0.0006 19.2 0.1 0.0048 16.3 0.1 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|313125276|ref|YP_004035540.1| - 0.0042 16.7 0.0 0.0089 15.6 0.0 1.5 1 1 0 1 1 1 1 RIO1 family Ribosomal_S24e PF01282.19 gi|313125277|ref|YP_004035541.1| - 1.3e-25 89.2 0.1 1.6e-25 88.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|313125278|ref|YP_004035542.1| - 1.6e-42 144.1 0.2 2e-42 143.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) eIF-5a PF01287.20 gi|313125278|ref|YP_004035542.1| - 0.049 13.7 1.9 0.36 11.0 0.1 2.5 2 1 1 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold DUF1525 PF07511.11 gi|313125278|ref|YP_004035542.1| - 0.098 12.8 0.4 0.13 12.4 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1525) DUF4911 PF16256.5 gi|313125278|ref|YP_004035542.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4911) acVLRF1 PF18859.1 gi|313125278|ref|YP_004035542.1| - 0.79 10.0 5.7 0.28 11.5 1.0 2.0 1 1 1 2 2 2 0 Actinobacteria/chloroflexi VLRF1 release factor Spt4 PF06093.13 gi|313125279|ref|YP_004035543.1| - 2.1e-14 53.4 0.1 2.5e-14 53.1 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-RanBP PF00641.18 gi|313125279|ref|YP_004035543.1| - 0.0022 17.3 2.0 0.0029 16.9 2.0 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|313125279|ref|YP_004035543.1| - 0.0022 18.0 1.0 0.0028 17.6 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|313125279|ref|YP_004035543.1| - 0.0023 17.6 2.1 0.0032 17.1 2.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|313125279|ref|YP_004035543.1| - 0.039 14.0 0.3 0.045 13.8 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|313125279|ref|YP_004035543.1| - 0.042 13.8 3.4 0.26 11.2 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal SHS2_Rpb7-N PF03876.17 gi|313125280|ref|YP_004035544.1| - 1.6e-15 57.2 0.1 2.5e-15 56.6 0.1 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|313125280|ref|YP_004035544.1| - 1.4e-14 54.2 0.4 3.5e-14 52.9 0.4 1.7 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.6 gi|313125280|ref|YP_004035544.1| - 0.007 16.4 0.0 0.64 10.1 0.0 2.4 1 1 0 1 1 1 1 S1 domain RNA_pol_Rbc25 PF08292.12 gi|313125280|ref|YP_004035544.1| - 0.014 15.7 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|313125281|ref|YP_004035545.1| - 5e-39 133.2 0.7 5.9e-39 133.0 0.7 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|313125281|ref|YP_004035545.1| - 1.2e-07 31.5 0.1 2.2e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.6 gi|313125281|ref|YP_004035545.1| - 0.00034 20.9 0.0 0.0008 19.7 0.0 1.5 1 1 1 2 2 2 1 PIN domain Fcf1 PF04900.12 gi|313125281|ref|YP_004035545.1| - 0.007 16.7 0.0 0.0096 16.3 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_12 PF16289.5 gi|313125281|ref|YP_004035545.1| - 0.14 12.7 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 PIN domain eIF2_C PF09173.11 gi|313125282|ref|YP_004035546.1| - 1.6e-30 105.2 0.1 4.2e-30 103.8 0.1 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|313125282|ref|YP_004035546.1| - 2.7e-29 102.1 3.5 2.1e-28 99.2 3.5 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|313125282|ref|YP_004035546.1| - 6.9e-09 36.0 1.6 1.7e-08 34.7 1.6 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|313125282|ref|YP_004035546.1| - 5.6e-05 23.2 0.0 0.00012 22.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313125282|ref|YP_004035546.1| - 5.7e-05 23.1 2.3 0.0027 17.6 0.2 2.7 3 0 0 3 3 3 1 RsgA GTPase PduV-EutP PF10662.9 gi|313125282|ref|YP_004035546.1| - 0.0013 18.4 0.9 0.25 11.1 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|313125282|ref|YP_004035546.1| - 0.0075 15.9 0.8 0.23 11.0 0.2 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|313125282|ref|YP_004035546.1| - 0.015 15.3 0.1 0.029 14.4 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|313125282|ref|YP_004035546.1| - 0.032 13.8 2.5 6.6 6.2 2.5 2.4 1 1 0 1 1 1 0 Ferrous iron transport protein B SRPRB PF09439.10 gi|313125282|ref|YP_004035546.1| - 0.15 11.5 0.0 9.6 5.6 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Cthe_2159 PF14262.6 gi|313125283|ref|YP_004035547.1| - 0.043 13.2 0.0 0.066 12.5 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate-binding domain-containing protein Cthe_2159 Lactamase_B_2 PF12706.7 gi|313125287|ref|YP_004035551.1| - 5.2e-20 71.8 0.4 6.7e-20 71.5 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313125287|ref|YP_004035551.1| - 0.001 19.1 2.8 0.0014 18.7 2.8 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA PF00004.29 gi|313125289|ref|YP_004035553.1| - 3.8e-40 137.4 0.0 9.1e-40 136.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313125289|ref|YP_004035553.1| - 4e-09 36.1 0.3 1e-08 34.9 0.3 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_18 PF13238.6 gi|313125289|ref|YP_004035553.1| - 1.2e-06 29.1 0.1 4.1e-05 24.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|313125289|ref|YP_004035553.1| - 1.6e-06 28.1 0.0 8.8e-06 25.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|313125289|ref|YP_004035553.1| - 2.7e-06 27.7 0.2 0.00013 22.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|313125289|ref|YP_004035553.1| - 4.3e-06 27.0 0.0 1.3e-05 25.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|313125289|ref|YP_004035553.1| - 2.4e-05 24.1 0.1 8.9e-05 22.3 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|313125289|ref|YP_004035553.1| - 8.8e-05 22.8 3.2 0.0063 16.8 0.9 3.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|313125289|ref|YP_004035553.1| - 0.00021 21.5 0.0 0.00056 20.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|313125289|ref|YP_004035553.1| - 0.00036 20.9 2.1 0.02 15.3 0.1 3.1 1 1 2 4 4 3 1 AAA ATPase domain AAA_17 PF13207.6 gi|313125289|ref|YP_004035553.1| - 0.00099 19.5 0.3 0.0039 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|313125289|ref|YP_004035553.1| - 0.0013 18.3 0.0 0.0032 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|313125289|ref|YP_004035553.1| - 0.0018 17.9 2.1 0.0096 15.5 0.0 2.9 2 2 1 3 3 3 1 AAA domain T2SSE PF00437.20 gi|313125289|ref|YP_004035553.1| - 0.002 17.3 0.0 0.0036 16.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein SKI PF01202.22 gi|313125289|ref|YP_004035553.1| - 0.0021 18.2 0.0 0.0057 16.8 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase TIP49 PF06068.13 gi|313125289|ref|YP_004035553.1| - 0.0023 17.2 0.0 0.0045 16.3 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain Cytidylate_kin2 PF13189.6 gi|313125289|ref|YP_004035553.1| - 0.0041 17.3 0.0 0.0098 16.0 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|313125289|ref|YP_004035553.1| - 0.0071 16.4 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|313125289|ref|YP_004035553.1| - 0.0084 15.9 0.1 0.029 14.1 0.0 2.0 1 1 1 2 2 2 1 IstB-like ATP binding protein TniB PF05621.11 gi|313125289|ref|YP_004035553.1| - 0.0096 15.3 0.1 1.1 8.7 0.0 2.6 2 1 0 2 2 2 1 Bacterial TniB protein Rad17 PF03215.15 gi|313125289|ref|YP_004035553.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|313125289|ref|YP_004035553.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase TsaE PF02367.17 gi|313125289|ref|YP_004035553.1| - 0.014 15.4 0.0 0.03 14.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|313125289|ref|YP_004035553.1| - 0.014 15.9 0.1 0.078 13.5 0.0 2.5 1 1 0 2 2 2 0 ABC transporter RNA_helicase PF00910.22 gi|313125289|ref|YP_004035553.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|313125289|ref|YP_004035553.1| - 0.019 15.1 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|313125289|ref|YP_004035553.1| - 0.02 14.7 0.0 0.042 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|313125289|ref|YP_004035553.1| - 0.023 14.5 0.0 0.92 9.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|313125289|ref|YP_004035553.1| - 0.025 14.6 0.0 0.077 13.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|313125289|ref|YP_004035553.1| - 0.029 14.2 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|313125289|ref|YP_004035553.1| - 0.05 13.0 0.0 0.092 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|313125289|ref|YP_004035553.1| - 0.072 13.0 0.0 6.9 6.6 0.0 2.5 1 1 1 2 2 2 0 NACHT domain SRP54 PF00448.22 gi|313125289|ref|YP_004035553.1| - 0.08 12.6 1.8 0.41 10.2 0.0 2.4 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|313125289|ref|YP_004035553.1| - 0.095 12.4 0.1 0.23 11.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|313125289|ref|YP_004035553.1| - 0.15 11.4 2.4 1.9 7.8 0.2 2.7 1 1 1 2 2 2 0 KaiC AAA_19 PF13245.6 gi|313125289|ref|YP_004035553.1| - 1.1 9.5 3.8 0.83 10.0 0.5 2.4 2 1 0 2 2 1 0 AAA domain Thiolase_N PF00108.23 gi|313125290|ref|YP_004035554.1| - 7.3e-79 264.8 0.4 2.1e-78 263.3 0.8 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|313125290|ref|YP_004035554.1| - 7.1e-42 141.9 0.8 9.8e-42 141.5 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|313125290|ref|YP_004035554.1| - 0.00011 21.9 0.8 0.00019 21.1 0.1 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|313125290|ref|YP_004035554.1| - 0.065 13.1 4.9 0.51 10.2 0.1 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_7 PF02796.15 gi|313125290|ref|YP_004035554.1| - 0.13 12.3 0.0 0.62 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase YfhD PF14151.6 gi|313125290|ref|YP_004035554.1| - 0.81 9.9 4.0 0.97 9.6 1.0 2.3 2 0 0 2 2 2 0 YfhD-like protein DUF433 PF04255.14 gi|313125290|ref|YP_004035554.1| - 0.97 9.3 3.7 4.2 7.3 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF433) Na_H_Exchanger PF00999.21 gi|313125291|ref|YP_004035555.1| - 4.4e-34 117.9 42.0 5.9e-34 117.5 42.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|313125291|ref|YP_004035555.1| - 2.5e-33 114.8 1.0 6.2e-33 113.5 1.0 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|313125291|ref|YP_004035555.1| - 5.7e-12 45.3 0.9 2e-10 40.4 0.1 2.6 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|313125291|ref|YP_004035555.1| - 2.7e-09 37.4 0.2 9.4e-09 35.7 0.1 2.0 2 0 0 2 2 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|313125291|ref|YP_004035555.1| - 4.3e-06 26.7 1.9 1e-05 25.5 1.9 1.7 1 1 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|313125291|ref|YP_004035555.1| - 4e-05 24.1 2.9 0.00017 22.1 0.4 3.0 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|313125291|ref|YP_004035555.1| - 0.0001 21.9 0.4 0.00016 21.2 0.4 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.27 gi|313125291|ref|YP_004035555.1| - 0.00047 20.7 0.2 0.0024 18.4 0.1 2.3 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|313125291|ref|YP_004035555.1| - 0.00074 19.2 0.0 0.0021 17.7 0.0 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|313125291|ref|YP_004035555.1| - 0.0011 18.7 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|313125291|ref|YP_004035555.1| - 0.0015 17.8 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain AdoHcyase_NAD PF00670.21 gi|313125291|ref|YP_004035555.1| - 0.0021 18.1 0.1 0.0044 17.1 0.1 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_2 PF07992.14 gi|313125291|ref|YP_004035555.1| - 0.0043 16.3 1.2 0.0055 16.0 0.2 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|313125291|ref|YP_004035555.1| - 0.0045 17.2 2.3 0.013 15.8 0.4 2.7 2 1 1 3 3 3 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|313125291|ref|YP_004035555.1| - 0.0046 17.1 0.1 0.011 15.9 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|313125291|ref|YP_004035555.1| - 0.0047 16.9 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DFP PF04127.15 gi|313125291|ref|YP_004035555.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein UDPG_MGDP_dh_N PF03721.14 gi|313125291|ref|YP_004035555.1| - 0.02 14.5 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|313125291|ref|YP_004035555.1| - 0.02 14.0 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|313125291|ref|YP_004035555.1| - 0.022 14.7 0.2 0.022 14.7 0.2 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|313125291|ref|YP_004035555.1| - 0.043 13.4 0.1 0.083 12.5 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain XdhC_C PF13478.6 gi|313125291|ref|YP_004035555.1| - 0.06 13.9 0.0 0.15 12.6 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|313125291|ref|YP_004035555.1| - 0.11 11.9 0.1 0.32 10.3 0.1 1.8 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|313125291|ref|YP_004035555.1| - 0.12 11.1 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|313125291|ref|YP_004035555.1| - 0.16 12.3 0.0 0.16 12.3 0.0 2.5 3 0 0 3 3 1 0 NAD(P)-binding Rossmann-like domain DUF4564 PF15169.6 gi|313125291|ref|YP_004035555.1| - 0.27 10.9 0.3 1.1 8.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4564) AMP-binding PF00501.28 gi|313125292|ref|YP_004035556.1| - 2.2e-91 306.6 0.0 2.6e-91 306.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Lactamase_B PF00753.27 gi|313125293|ref|YP_004035557.1| - 2.8e-25 89.5 4.4 4.2e-25 88.9 4.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313125293|ref|YP_004035557.1| - 0.0022 17.6 0.7 0.005 16.4 0.7 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain META PF03724.16 gi|313125294|ref|YP_004035558.1| - 5.8e-06 26.2 1.2 0.056 13.4 0.1 2.8 2 1 0 2 2 2 2 META domain HTH_20 PF12840.7 gi|313125295|ref|YP_004035559.1| - 3.5e-12 46.2 0.1 1.3e-11 44.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313125295|ref|YP_004035559.1| - 9e-10 38.3 0.0 2.2e-09 37.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|313125295|ref|YP_004035559.1| - 7.7e-07 28.6 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313125295|ref|YP_004035559.1| - 3.4e-06 26.8 0.4 1.8e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|313125295|ref|YP_004035559.1| - 0.0015 18.4 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|313125295|ref|YP_004035559.1| - 0.0027 17.6 0.2 0.0059 16.6 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|313125295|ref|YP_004035559.1| - 0.0053 17.2 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|313125295|ref|YP_004035559.1| - 0.02 15.2 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|313125295|ref|YP_004035559.1| - 0.026 14.4 0.3 0.07 13.0 0.1 1.8 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|313125295|ref|YP_004035559.1| - 0.035 14.3 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Sigma70_r4 PF04545.16 gi|313125295|ref|YP_004035559.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2513 PF10711.9 gi|313125295|ref|YP_004035559.1| - 0.14 12.5 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Seryl_tRNA_N PF02403.22 gi|313125296|ref|YP_004035560.1| - 5.8e-29 100.5 5.9 1.1e-28 99.6 5.9 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|313125296|ref|YP_004035560.1| - 8.5e-28 97.5 0.0 3.3e-27 95.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) FapA PF03961.13 gi|313125296|ref|YP_004035560.1| - 0.056 12.0 3.5 0.086 11.4 3.5 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Syntaxin PF00804.25 gi|313125296|ref|YP_004035560.1| - 0.31 10.7 4.3 0.59 9.8 4.3 1.5 1 0 0 1 1 1 0 Syntaxin Fmp27_WPPW PF10359.9 gi|313125296|ref|YP_004035560.1| - 0.32 9.8 2.6 0.52 9.1 2.6 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain YdfA_immunity PF12127.8 gi|313125296|ref|YP_004035560.1| - 0.54 9.3 1.0 0.82 8.7 1.0 1.2 1 0 0 1 1 1 0 SigmaW regulon antibacterial Golgin_A5 PF09787.9 gi|313125296|ref|YP_004035560.1| - 0.94 8.9 6.7 1.4 8.3 6.7 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 HalOD1 PF18545.1 gi|313125297|ref|YP_004035561.1| - 0.00086 19.5 0.1 0.0015 18.8 0.1 1.4 1 1 0 1 1 1 1 Halobacterial output domain 1 SnoaL_2 PF12680.7 gi|313125298|ref|YP_004035562.1| - 4.5e-12 46.5 3.3 6.3e-12 46.0 3.3 1.2 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|313125298|ref|YP_004035562.1| - 4.2e-09 36.8 0.6 6.6e-09 36.1 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|313125298|ref|YP_004035562.1| - 6.1e-06 26.5 0.1 9.1e-06 25.9 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|313125298|ref|YP_004035562.1| - 8.9e-06 26.3 0.0 1.1e-05 25.9 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_4 PF13577.6 gi|313125298|ref|YP_004035562.1| - 1.4e-05 25.2 0.5 1.7e-05 25.0 0.5 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|313125298|ref|YP_004035562.1| - 0.00013 21.7 0.2 0.0002 21.2 0.2 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4829 PF16111.5 gi|313125298|ref|YP_004035562.1| - 0.077 13.8 0.0 0.098 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) Ribo_biogen_C PF04034.13 gi|313125299|ref|YP_004035563.1| - 3.1e-45 153.0 0.0 3.8e-45 152.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|313125299|ref|YP_004035563.1| - 4.5e-08 32.8 0.0 6.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI NOG1_N PF17835.1 gi|313125300|ref|YP_004035564.1| - 8.2e-43 146.1 0.0 1.4e-42 145.4 0.0 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|313125300|ref|YP_004035564.1| - 6.8e-22 77.0 0.0 1.3e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|313125300|ref|YP_004035564.1| - 1.7e-21 76.4 0.0 3.3e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|313125300|ref|YP_004035564.1| - 3.6e-11 42.8 0.0 6.9e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|313125300|ref|YP_004035564.1| - 3e-06 27.4 0.3 0.022 14.8 0.0 3.1 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.16 gi|313125300|ref|YP_004035564.1| - 0.00016 21.1 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 gi|313125300|ref|YP_004035564.1| - 0.00018 21.1 0.0 0.0043 16.6 0.0 2.6 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|313125300|ref|YP_004035564.1| - 0.0028 17.6 0.0 0.038 13.9 0.0 2.3 2 1 0 2 2 2 1 RsgA GTPase 6PF2K PF01591.18 gi|313125300|ref|YP_004035564.1| - 0.0052 16.1 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 1 6-phosphofructo-2-kinase AAA_16 PF13191.6 gi|313125300|ref|YP_004035564.1| - 0.0057 17.1 0.1 0.022 15.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain SRPRB PF09439.10 gi|313125300|ref|YP_004035564.1| - 0.0059 16.1 0.0 0.018 14.5 0.0 1.8 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit DUF2451 PF10474.9 gi|313125300|ref|YP_004035564.1| - 0.013 15.3 0.1 0.021 14.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2451) DUF4174 PF13778.6 gi|313125300|ref|YP_004035564.1| - 0.055 14.0 0.0 9.2 6.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4174) Roc PF08477.13 gi|313125300|ref|YP_004035564.1| - 0.1 12.8 0.0 3.5 7.9 0.0 2.8 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|313125300|ref|YP_004035564.1| - 0.1 13.1 0.0 0.35 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain SIS PF01380.22 gi|313125300|ref|YP_004035564.1| - 0.11 12.4 0.0 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 SIS domain Ras PF00071.22 gi|313125300|ref|YP_004035564.1| - 0.14 11.8 0.1 0.91 9.1 0.0 2.3 2 1 0 2 2 2 0 Ras family SIMPL PF04402.14 gi|313125301|ref|YP_004035565.1| - 2.4e-43 148.9 10.3 3.1e-43 148.6 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Flg_hook PF02120.16 gi|313125301|ref|YP_004035565.1| - 0.02 14.8 0.5 0.18 11.7 0.2 2.4 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK DUF389 PF04087.14 gi|313125302|ref|YP_004035566.1| - 9.1e-33 113.3 17.4 9.1e-33 113.3 17.4 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) 5-FTHF_cyc-lig PF01812.20 gi|313125303|ref|YP_004035567.1| - 1.7e-31 109.5 0.0 2.1e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MMR_HSR1 PF01926.23 gi|313125304|ref|YP_004035568.1| - 2.1e-20 72.9 0.0 3.1e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|313125304|ref|YP_004035568.1| - 1.1e-13 51.0 0.1 1.5e-12 47.3 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|313125304|ref|YP_004035568.1| - 1.2e-06 28.2 0.0 0.00027 20.5 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|313125304|ref|YP_004035568.1| - 4.3e-06 26.7 0.0 0.002 18.0 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 gi|313125304|ref|YP_004035568.1| - 4.4e-06 26.2 0.0 1.7e-05 24.3 0.0 1.8 1 1 1 2 2 2 1 AIG1 family ABC_tran PF00005.27 gi|313125304|ref|YP_004035568.1| - 0.0028 18.2 0.0 0.0036 17.8 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|313125304|ref|YP_004035568.1| - 0.0091 16.5 0.0 0.014 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|313125304|ref|YP_004035568.1| - 0.012 15.7 0.1 0.029 14.4 0.1 1.6 1 1 1 2 2 2 0 Dynamin family TIP49 PF06068.13 gi|313125304|ref|YP_004035568.1| - 0.013 14.7 0.2 0.023 13.9 0.2 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain Roc PF08477.13 gi|313125304|ref|YP_004035568.1| - 0.014 15.6 0.1 0.041 14.1 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|313125304|ref|YP_004035568.1| - 0.032 14.0 0.4 0.73 9.6 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|313125304|ref|YP_004035568.1| - 0.038 14.3 0.1 0.24 11.7 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|313125304|ref|YP_004035568.1| - 0.039 14.3 0.1 0.14 12.5 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain SRPRB PF09439.10 gi|313125304|ref|YP_004035568.1| - 0.048 13.1 0.0 0.097 12.1 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|313125304|ref|YP_004035568.1| - 0.054 13.1 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Ras family RNA_helicase PF00910.22 gi|313125304|ref|YP_004035568.1| - 0.078 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Arf PF00025.21 gi|313125304|ref|YP_004035568.1| - 0.11 12.0 0.0 4.1 6.8 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_24 PF13479.6 gi|313125304|ref|YP_004035568.1| - 0.12 12.1 0.0 0.55 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Guanylate_kin PF00625.21 gi|313125304|ref|YP_004035568.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Guanylate kinase PduV-EutP PF10662.9 gi|313125304|ref|YP_004035568.1| - 0.14 11.9 0.0 0.43 10.3 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MIP-T3 PF10243.9 gi|313125304|ref|YP_004035568.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 CH-like domain TniB PF05621.11 gi|313125304|ref|YP_004035568.1| - 0.19 11.1 0.0 0.36 10.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein DUF3179 PF11376.8 gi|313125305|ref|YP_004035569.1| - 9.7e-45 153.1 0.0 3.7e-26 92.2 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3179) IF-2B PF01008.17 gi|313125306|ref|YP_004035570.1| - 5.2e-33 114.5 1.1 6.6e-33 114.1 1.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|313125306|ref|YP_004035570.1| - 1e-07 32.0 2.0 1e-07 32.0 2.0 2.1 2 0 0 2 2 2 1 NUDIX domain Metallophos_2 PF12850.7 gi|313125307|ref|YP_004035571.1| - 5.1e-26 91.8 0.8 6.2e-26 91.5 0.8 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313125307|ref|YP_004035571.1| - 0.00093 19.7 0.8 0.019 15.5 0.1 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase F420_ligase PF01996.16 gi|313125308|ref|YP_004035572.1| - 1.5e-57 194.7 0.0 1.9e-57 194.4 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.20 gi|313125309|ref|YP_004035573.1| - 1.3e-60 205.5 3.9 1.4e-60 205.4 3.0 1.4 1 1 1 2 2 2 1 Luciferase-like monooxygenase Phage_Nu1 PF07471.12 gi|313125309|ref|YP_004035573.1| - 0.18 11.6 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 zf-ribbon_3 PF13248.6 gi|313125311|ref|YP_004035575.1| - 0.0041 16.5 2.0 0.5 9.8 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain dbPDZ_assoc PF16610.5 gi|313125311|ref|YP_004035575.1| - 0.078 13.2 2.6 0.11 12.7 2.6 1.1 1 0 0 1 1 1 0 Unstructured region between two PDZ domains on Dlg5 Zn-ribbon_8 PF09723.10 gi|313125311|ref|YP_004035575.1| - 0.082 13.0 3.1 0.45 10.7 3.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313125311|ref|YP_004035575.1| - 0.1 12.6 1.8 0.28 11.2 1.8 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|313125311|ref|YP_004035575.1| - 0.1 12.5 1.9 0.23 11.4 1.9 1.6 1 0 0 1 1 1 0 Nudix N-terminal DUF35_N PF12172.8 gi|313125311|ref|YP_004035575.1| - 0.3 11.0 3.3 4.6 7.2 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.6 gi|313125311|ref|YP_004035575.1| - 0.68 9.9 4.7 1.7 8.6 4.7 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2387 PF09526.10 gi|313125311|ref|YP_004035575.1| - 3.7 7.8 6.6 1.5 9.0 3.0 1.9 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) MutL_C PF08676.11 gi|313125312|ref|YP_004035576.1| - 4.2e-30 104.5 0.0 7.6e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|313125312|ref|YP_004035576.1| - 1.2e-26 92.7 0.0 2e-26 92.0 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|313125312|ref|YP_004035576.1| - 1.2e-10 41.4 0.1 1.9e-10 40.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|313125312|ref|YP_004035576.1| - 6.5e-06 26.6 0.3 1.7e-05 25.3 0.1 1.9 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Se-cys_synth_N PF12390.8 gi|313125312|ref|YP_004035576.1| - 3.4 8.0 11.3 4.5 7.6 0.1 4.8 4 1 0 4 4 4 0 Selenocysteine synthase N terminal MutS_V PF00488.21 gi|313125313|ref|YP_004035577.1| - 2.1e-79 266.0 0.0 3.3e-79 265.3 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|313125313|ref|YP_004035577.1| - 5.9e-38 131.0 1.9 1.2e-37 130.1 1.9 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|313125313|ref|YP_004035577.1| - 3.2e-36 124.0 0.0 5.9e-36 123.1 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|313125313|ref|YP_004035577.1| - 2.5e-31 107.9 0.4 5.4e-31 106.8 0.4 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|313125313|ref|YP_004035577.1| - 4.7e-08 33.4 0.0 1.5e-07 31.7 0.0 1.9 1 0 0 1 1 1 1 MutS domain II AAA_23 PF13476.6 gi|313125313|ref|YP_004035577.1| - 0.06 13.9 0.0 0.31 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313125313|ref|YP_004035577.1| - 0.074 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|313125313|ref|YP_004035577.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain TerB PF05099.13 gi|313125313|ref|YP_004035577.1| - 1.2 9.1 13.9 1.7 8.6 0.1 4.1 5 0 0 5 5 5 0 Tellurite resistance protein TerB AAA_3 PF07726.11 gi|313125314|ref|YP_004035578.1| - 4.3e-59 198.1 0.1 6.3e-59 197.5 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|313125314|ref|YP_004035578.1| - 4.7e-20 71.2 1.0 1.7e-19 69.4 1.0 2.0 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|313125314|ref|YP_004035578.1| - 5.2e-13 49.2 0.0 8.8e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313125314|ref|YP_004035578.1| - 1.4e-06 28.8 0.0 2.5e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313125314|ref|YP_004035578.1| - 1.7e-05 24.6 0.0 0.0019 17.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|313125314|ref|YP_004035578.1| - 4.1e-05 23.1 0.3 0.00094 18.6 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|313125314|ref|YP_004035578.1| - 0.00017 20.8 0.0 0.00037 19.7 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|313125314|ref|YP_004035578.1| - 0.0016 18.2 0.0 0.011 15.4 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|313125314|ref|YP_004035578.1| - 0.086 12.9 0.0 0.39 10.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.18 gi|313125315|ref|YP_004035579.1| - 1.8e-18 66.6 0.4 7.1e-18 64.7 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF58 Transglut_core PF01841.19 gi|313125316|ref|YP_004035580.1| - 2.7e-30 105.1 0.9 7.6e-30 103.7 0.1 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|313125316|ref|YP_004035580.1| - 3.1e-10 40.1 10.4 1.7e-09 37.8 10.4 2.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.6 gi|313125316|ref|YP_004035580.1| - 1e-05 25.4 0.0 4.4e-05 23.4 0.0 2.1 1 0 0 1 1 1 1 Transglutaminase-like superfamily SUI1 PF01253.22 gi|313125317|ref|YP_004035581.1| - 1.5e-22 79.9 0.0 1.8e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|313125317|ref|YP_004035581.1| - 0.0031 17.8 0.0 0.0047 17.2 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|313125317|ref|YP_004035581.1| - 0.01 15.6 0.5 0.012 15.3 0.5 1.1 1 0 0 1 1 1 0 DTW domain Rhodanese PF00581.20 gi|313125318|ref|YP_004035582.1| - 8.3e-13 48.8 0.0 1e-12 48.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.28 gi|313125319|ref|YP_004035583.1| - 1.9e-15 57.1 0.9 2.9e-15 56.5 0.9 1.2 1 0 0 1 1 1 1 NUDIX domain DUF98 PF01947.16 gi|313125320|ref|YP_004035584.1| - 0.054 13.5 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 p-hydroxybenzoic acid synthase zf-C2H2_9 PF16293.5 gi|313125321|ref|YP_004035585.1| - 4.6e-05 23.2 0.1 7.9e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) HalOD1 PF18545.1 gi|313125322|ref|YP_004035586.1| - 5.1e-12 45.9 3.6 5.5e-11 42.6 3.6 2.2 1 1 0 1 1 1 1 Halobacterial output domain 1 PAS_4 PF08448.10 gi|313125323|ref|YP_004035587.1| - 1.3e-30 105.8 5.3 5e-16 58.9 0.8 3.9 3 0 0 3 3 3 2 PAS fold BAT PF15915.5 gi|313125323|ref|YP_004035587.1| - 1.1e-27 96.8 13.6 1.1e-27 96.8 13.6 4.9 5 2 0 6 6 6 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|313125323|ref|YP_004035587.1| - 8.9e-25 86.9 0.1 5.7e-16 58.5 0.1 2.8 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|313125323|ref|YP_004035587.1| - 1.3e-22 80.6 14.0 2.7e-10 40.7 0.5 5.3 5 1 0 5 5 5 3 GAF domain PAS_9 PF13426.7 gi|313125323|ref|YP_004035587.1| - 3.7e-20 72.1 0.0 9.7e-11 41.9 0.0 3.6 3 0 0 3 3 3 2 PAS domain HTH_10 PF04967.12 gi|313125323|ref|YP_004035587.1| - 9.6e-18 63.7 0.0 3.1e-17 62.1 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.26 gi|313125323|ref|YP_004035587.1| - 3e-14 53.8 2.6 4.6e-08 33.8 0.1 4.3 4 0 0 4 4 4 2 GAF domain PAS_8 PF13188.7 gi|313125323|ref|YP_004035587.1| - 3e-13 49.4 1.0 3.4e-07 30.1 0.1 3.2 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|313125323|ref|YP_004035587.1| - 6.5e-11 42.7 0.7 7.4e-08 32.8 0.0 4.1 4 0 0 4 4 4 1 GAF domain PAS_7 PF12860.7 gi|313125323|ref|YP_004035587.1| - 6.4e-10 39.2 3.0 0.0002 21.5 0.3 4.0 3 1 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|313125323|ref|YP_004035587.1| - 2.9e-08 33.9 0.1 0.00013 22.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.6 gi|313125323|ref|YP_004035587.1| - 5.5e-07 30.1 0.4 0.0027 18.3 0.0 3.6 4 0 0 4 4 4 2 PAS domain PTRF_SDPR PF15237.6 gi|313125323|ref|YP_004035587.1| - 0.55 9.8 3.7 0.46 10.1 0.0 2.1 2 0 0 2 2 2 0 PTRF/SDPR family Acetyltransf_1 PF00583.25 gi|313125324|ref|YP_004035588.1| - 9.4e-16 58.1 0.0 1.2e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313125324|ref|YP_004035588.1| - 9.4e-13 48.4 0.0 1.4e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313125324|ref|YP_004035588.1| - 1.7e-11 44.1 0.0 2.1e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313125324|ref|YP_004035588.1| - 2.8e-06 27.2 0.0 4.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|313125324|ref|YP_004035588.1| - 4.3e-06 26.8 0.0 8.6e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|313125324|ref|YP_004035588.1| - 0.016 14.9 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Aconitase PF00330.20 gi|313125325|ref|YP_004035589.1| - 3.3e-105 352.8 0.3 2e-103 346.9 0.3 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|313125325|ref|YP_004035589.1| - 1.8e-21 76.8 0.0 3.6e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|313125325|ref|YP_004035589.1| - 0.049 12.4 0.0 0.068 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Barwin PF00967.17 gi|313125325|ref|YP_004035589.1| - 0.066 13.1 0.2 0.3 11.0 0.0 2.1 2 1 0 3 3 3 0 Barwin family dUTPase PF00692.19 gi|313125327|ref|YP_004035591.1| - 8.1e-12 44.9 0.0 1.2e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|313125327|ref|YP_004035591.1| - 0.044 12.6 0.0 0.1 11.3 0.0 1.8 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) PAS_9 PF13426.7 gi|313125328|ref|YP_004035592.1| - 1.6e-15 57.2 0.0 7.9e-15 55.0 0.0 2.0 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|313125328|ref|YP_004035592.1| - 2.7e-13 50.4 0.0 5.3e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313125328|ref|YP_004035592.1| - 4.1e-09 36.7 0.1 1.3e-08 35.1 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|313125328|ref|YP_004035592.1| - 5.1e-09 36.1 0.0 1e-08 35.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|313125328|ref|YP_004035592.1| - 6.4e-07 29.3 0.5 2.6e-06 27.3 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS_3 PF08447.12 gi|313125328|ref|YP_004035592.1| - 0.0002 21.6 0.0 0.00065 19.9 0.0 2.0 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|313125328|ref|YP_004035592.1| - 0.00027 20.9 0.0 0.00055 19.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|313125328|ref|YP_004035592.1| - 0.013 15.1 0.1 0.02 14.5 0.1 1.3 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|313125328|ref|YP_004035592.1| - 0.035 14.0 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 GHKL domain AAA PF00004.29 gi|313125329|ref|YP_004035593.1| - 6.5e-43 146.3 0.1 1.5e-42 145.1 0.1 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313125329|ref|YP_004035593.1| - 4.7e-12 45.5 0.9 1.3e-11 44.1 0.9 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|313125329|ref|YP_004035593.1| - 6.3e-08 32.9 0.0 1.7e-07 31.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|313125329|ref|YP_004035593.1| - 2.1e-07 30.9 0.1 1e-06 28.6 0.0 2.2 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|313125329|ref|YP_004035593.1| - 2e-06 27.8 0.2 8.9e-06 25.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|313125329|ref|YP_004035593.1| - 4.8e-06 27.1 3.9 0.00048 20.6 0.0 3.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|313125329|ref|YP_004035593.1| - 2.4e-05 24.6 1.7 0.0012 19.1 0.0 2.9 2 1 1 3 3 3 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|313125329|ref|YP_004035593.1| - 0.00018 21.4 0.3 0.00058 19.8 0.1 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|313125329|ref|YP_004035593.1| - 0.00042 19.5 0.0 0.00083 18.6 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|313125329|ref|YP_004035593.1| - 0.00049 19.4 0.0 0.0012 18.2 0.0 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|313125329|ref|YP_004035593.1| - 0.00068 19.8 0.1 0.0024 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|313125329|ref|YP_004035593.1| - 0.0019 18.2 0.0 0.0046 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|313125329|ref|YP_004035593.1| - 0.0027 18.0 0.3 0.012 15.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|313125329|ref|YP_004035593.1| - 0.0031 16.9 0.0 0.0065 15.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|313125329|ref|YP_004035593.1| - 0.0036 17.1 0.0 0.021 14.5 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|313125329|ref|YP_004035593.1| - 0.0055 17.2 0.5 0.032 14.8 0.0 2.5 3 1 0 3 3 2 1 AAA domain AAA_11 PF13086.6 gi|313125329|ref|YP_004035593.1| - 0.0061 16.4 0.3 0.075 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|313125329|ref|YP_004035593.1| - 0.0078 16.1 0.2 0.043 13.7 0.0 2.2 2 0 0 2 2 2 1 NACHT domain MAD PF05557.13 gi|313125329|ref|YP_004035593.1| - 0.0095 14.4 0.9 0.014 13.8 0.9 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein Sigma54_activat PF00158.26 gi|313125329|ref|YP_004035593.1| - 0.0096 15.6 0.1 0.043 13.5 0.0 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|313125329|ref|YP_004035593.1| - 0.01 16.3 0.9 0.056 13.9 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|313125329|ref|YP_004035593.1| - 0.016 14.7 0.0 0.046 13.2 0.0 1.7 2 0 0 2 2 1 0 P-loop containing dynein motor region BLOC1_2 PF10046.9 gi|313125329|ref|YP_004035593.1| - 0.016 15.5 0.4 0.016 15.5 0.4 2.6 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NTPase_1 PF03266.15 gi|313125329|ref|YP_004035593.1| - 0.019 14.8 0.5 0.26 11.2 0.1 2.6 2 1 0 2 2 2 0 NTPase CASP_C PF08172.12 gi|313125329|ref|YP_004035593.1| - 0.02 14.2 1.1 0.032 13.6 1.1 1.3 1 0 0 1 1 1 0 CASP C terminal AAA_3 PF07726.11 gi|313125329|ref|YP_004035593.1| - 0.022 14.6 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|313125329|ref|YP_004035593.1| - 0.023 13.9 0.0 0.051 12.7 0.0 1.7 1 1 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|313125329|ref|YP_004035593.1| - 0.028 14.8 0.0 0.072 13.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Prot_ATP_OB_N PF17758.1 gi|313125329|ref|YP_004035593.1| - 0.029 14.0 0.2 0.11 12.2 0.1 2.1 2 0 0 2 2 1 0 Proteasomal ATPase OB N-terminal domain TsaE PF02367.17 gi|313125329|ref|YP_004035593.1| - 0.03 14.3 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPT PF07931.12 gi|313125329|ref|YP_004035593.1| - 0.036 13.9 0.0 0.1 12.5 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|313125329|ref|YP_004035593.1| - 0.038 13.7 0.5 0.14 11.8 0.1 2.2 2 1 0 2 2 2 0 AAA domain DUF4201 PF13870.6 gi|313125329|ref|YP_004035593.1| - 0.04 13.6 1.6 0.07 12.9 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Torsin PF06309.11 gi|313125329|ref|YP_004035593.1| - 0.043 13.9 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Torsin ZapB PF06005.12 gi|313125329|ref|YP_004035593.1| - 0.044 14.2 5.1 0.064 13.7 1.7 2.6 2 1 1 3 3 2 0 Cell division protein ZapB DMPK_coil PF08826.10 gi|313125329|ref|YP_004035593.1| - 0.053 13.6 5.7 0.06 13.5 3.7 2.2 2 0 0 2 2 1 0 DMPK coiled coil domain like DUF3086 PF11285.8 gi|313125329|ref|YP_004035593.1| - 0.063 12.4 0.2 0.098 11.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) COG6 PF06419.11 gi|313125329|ref|YP_004035593.1| - 0.1 10.8 0.9 0.15 10.2 0.9 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 ABC_tran PF00005.27 gi|313125329|ref|YP_004035593.1| - 0.11 13.0 1.4 0.24 11.9 0.0 2.3 2 2 0 2 2 2 0 ABC transporter Parvo_NS1 PF01057.17 gi|313125329|ref|YP_004035593.1| - 0.15 11.1 0.0 0.34 10.0 0.0 1.5 2 0 0 2 2 1 0 Parvovirus non-structural protein NS1 Swi5 PF07061.11 gi|313125329|ref|YP_004035593.1| - 0.17 12.0 0.6 0.47 10.6 0.6 1.7 1 0 0 1 1 1 0 Swi5 Myc-LZ PF02344.15 gi|313125329|ref|YP_004035593.1| - 0.22 11.7 0.2 0.22 11.7 0.2 1.7 2 0 0 2 2 1 0 Myc leucine zipper domain ATPase PF06745.13 gi|313125329|ref|YP_004035593.1| - 0.31 10.3 2.2 1.1 8.6 0.0 2.6 2 1 0 3 3 3 0 KaiC AAA_30 PF13604.6 gi|313125329|ref|YP_004035593.1| - 0.72 9.5 4.3 0.16 11.7 0.3 2.0 2 1 0 2 2 1 0 AAA domain DUF2721 PF11026.8 gi|313125329|ref|YP_004035593.1| - 0.8 9.6 2.4 1.5 8.7 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DivIC PF04977.15 gi|313125329|ref|YP_004035593.1| - 1.5 8.7 3.4 12 5.8 3.4 2.4 1 1 0 1 1 1 0 Septum formation initiator AAA_25 PF13481.6 gi|313125329|ref|YP_004035593.1| - 2.3 7.7 11.3 0.67 9.5 0.1 3.5 3 1 0 4 4 3 0 AAA domain NYD-SP28_assoc PF14775.6 gi|313125329|ref|YP_004035593.1| - 3.9 7.7 4.9 9.2 6.5 0.5 2.4 2 0 0 2 2 2 0 Sperm tail C-terminal domain PvlArgDC PF01862.16 gi|313125330|ref|YP_004035594.1| - 3.7e-34 117.9 0.2 4.1e-34 117.7 0.2 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF5629 PF18629.1 gi|313125330|ref|YP_004035594.1| - 0.065 13.8 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5629) DUF3561 PF12084.8 gi|313125332|ref|YP_004035596.1| - 0.014 15.4 0.6 0.019 15.0 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) AlbA_2 PF04326.14 gi|313125334|ref|YP_004035598.1| - 1.7e-07 31.6 0.0 3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain GTP_EFTU PF00009.27 gi|313125335|ref|YP_004035599.1| - 6.1e-33 114.0 0.0 5.8e-32 110.8 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|313125335|ref|YP_004035599.1| - 2.7e-25 88.1 0.3 8.1e-25 86.6 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|313125335|ref|YP_004035599.1| - 3.9e-22 78.4 0.7 9.2e-22 77.2 0.7 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|313125335|ref|YP_004035599.1| - 5.4e-14 52.3 7.9 2e-09 37.7 0.2 2.9 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|313125335|ref|YP_004035599.1| - 6.2e-08 32.7 0.0 1.8e-07 31.2 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|313125335|ref|YP_004035599.1| - 0.003 17.6 0.1 0.5 10.4 0.0 2.6 1 1 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|313125335|ref|YP_004035599.1| - 0.013 15.3 0.0 0.044 13.6 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|313125335|ref|YP_004035599.1| - 0.074 13.3 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase PRC PF05239.16 gi|313125336|ref|YP_004035600.1| - 3.9e-10 39.7 0.0 4.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain PIN_6 PF17146.4 gi|313125337|ref|YP_004035601.1| - 1.1e-10 41.8 0.0 2.1e-10 41.0 0.0 1.4 2 0 0 2 2 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|313125337|ref|YP_004035601.1| - 0.00021 20.8 0.1 0.00029 20.3 0.1 1.3 1 0 0 1 1 1 1 PINc domain ribonuclease HypA PF01155.19 gi|313125337|ref|YP_004035601.1| - 0.002 18.1 1.0 0.0033 17.4 1.0 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|313125337|ref|YP_004035601.1| - 0.0025 17.9 2.2 0.0061 16.6 2.2 1.6 1 0 0 1 1 1 1 Zinc ribbon domain DUF4411 PF14367.6 gi|313125337|ref|YP_004035601.1| - 0.0066 16.4 0.1 0.017 15.0 0.1 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) zinc-ribbons_6 PF07191.12 gi|313125337|ref|YP_004035601.1| - 0.012 15.5 0.7 0.019 14.9 0.7 1.2 1 0 0 1 1 1 0 zinc-ribbons C1_2 PF03107.16 gi|313125337|ref|YP_004035601.1| - 0.014 15.7 0.1 0.025 14.9 0.1 1.4 1 0 0 1 1 1 0 C1 domain zf-C3HC4_3 PF13920.6 gi|313125337|ref|YP_004035601.1| - 0.028 14.3 1.1 0.041 13.8 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2710 PF10921.8 gi|313125337|ref|YP_004035601.1| - 0.036 14.5 0.1 0.058 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) zinc_ribbon_15 PF17032.5 gi|313125337|ref|YP_004035601.1| - 0.048 14.4 0.2 0.065 14.0 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon family DZR PF12773.7 gi|313125337|ref|YP_004035601.1| - 0.049 13.7 0.9 0.074 13.1 0.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon Mut7-C PF01927.16 gi|313125337|ref|YP_004035601.1| - 0.063 13.4 0.1 0.078 13.1 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C2H2 PF00096.26 gi|313125337|ref|YP_004035601.1| - 0.07 13.6 1.9 5.4 7.7 0.5 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type NOB1_Zn_bind PF08772.11 gi|313125337|ref|YP_004035601.1| - 0.13 12.4 0.4 0.24 11.6 0.4 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2_4 PF13894.6 gi|313125337|ref|YP_004035601.1| - 0.14 13.1 1.3 12 7.1 0.3 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_4 PF14447.6 gi|313125337|ref|YP_004035601.1| - 0.17 11.8 1.3 0.27 11.1 1.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 Rad50_zn_hook PF04423.14 gi|313125337|ref|YP_004035601.1| - 0.21 11.4 1.1 1.4 8.8 0.7 2.2 1 1 1 2 2 2 0 Rad50 zinc hook motif zf-C3HC4_2 PF13923.6 gi|313125337|ref|YP_004035601.1| - 0.29 11.0 2.7 0.46 10.4 2.7 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.6 gi|313125337|ref|YP_004035601.1| - 0.34 10.9 3.2 0.96 9.4 3.2 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2HC_2 PF13913.6 gi|313125337|ref|YP_004035601.1| - 0.51 10.3 8.0 0.23 11.4 0.8 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type CPBP PF02517.16 gi|313125338|ref|YP_004035602.1| - 2.4e-14 53.4 11.1 8.7e-14 51.7 11.1 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease PGI PF00342.19 gi|313125339|ref|YP_004035603.1| - 4.1e-27 94.9 0.0 3.4e-25 88.6 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase DUF872 PF05915.12 gi|313125340|ref|YP_004035604.1| - 0.13 12.4 1.1 0.23 11.7 1.1 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3976 PF13121.6 gi|313125340|ref|YP_004035604.1| - 0.27 11.4 3.2 7.9 6.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3976) DUF898 PF05987.13 gi|313125340|ref|YP_004035604.1| - 0.72 8.8 9.0 2 7.4 9.0 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF805 PF05656.14 gi|313125340|ref|YP_004035604.1| - 2.1 8.8 5.5 4.4 7.8 5.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF2157 PF09925.9 gi|313125340|ref|YP_004035604.1| - 7.2 6.4 10.7 9.4 6.0 4.4 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) DUF4282 PF14110.6 gi|313125340|ref|YP_004035604.1| - 7.7 7.3 13.0 2.8 8.8 5.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) SNARE_assoc PF09335.11 gi|313125341|ref|YP_004035605.1| - 6.2e-24 84.8 6.2 1.4e-23 83.7 6.2 1.6 1 0 0 1 1 1 1 SNARE associated Golgi protein CDP-OH_P_transf PF01066.21 gi|313125342|ref|YP_004035606.1| - 1.9e-08 34.9 0.1 1.9e-08 34.9 0.1 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PhoLip_ATPase_C PF16212.5 gi|313125342|ref|YP_004035606.1| - 0.019 14.7 1.2 0.019 14.7 1.2 1.8 1 1 1 2 2 2 0 Phospholipid-translocating P-type ATPase C-terminal Flavi_NS4A PF01350.17 gi|313125342|ref|YP_004035606.1| - 0.069 13.1 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A ThrE PF06738.12 gi|313125342|ref|YP_004035606.1| - 0.9 8.9 6.1 0.11 11.9 1.4 1.7 2 0 0 2 2 2 0 Putative threonine/serine exporter Acetyltransf_1 PF00583.25 gi|313125343|ref|YP_004035607.1| - 3.2e-14 53.2 0.0 4.7e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313125343|ref|YP_004035607.1| - 1.5e-08 34.7 0.0 4.6e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313125343|ref|YP_004035607.1| - 1.7e-08 34.3 0.0 5e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|313125343|ref|YP_004035607.1| - 2.6e-08 34.2 0.0 4.6e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|313125343|ref|YP_004035607.1| - 2.1e-05 24.6 0.0 3.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313125343|ref|YP_004035607.1| - 0.00013 22.7 0.0 0.0002 22.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|313125343|ref|YP_004035607.1| - 0.0023 17.9 0.1 0.0043 17.0 0.1 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|313125343|ref|YP_004035607.1| - 0.0078 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Glyco_transf_21 PF13506.6 gi|313125345|ref|YP_004035609.1| - 3e-12 46.4 0.0 5.1e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|313125345|ref|YP_004035609.1| - 2.3e-10 40.6 0.1 3.7e-10 39.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313125345|ref|YP_004035609.1| - 1.2e-06 28.6 0.0 1.9e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Docking PF08990.11 gi|313125346|ref|YP_004035610.1| - 0.12 12.0 2.3 0.24 11.0 2.3 1.5 1 0 0 1 1 1 0 Erythronolide synthase docking SecD_SecF PF02355.16 gi|313125347|ref|YP_004035611.1| - 1.2e-27 96.6 13.3 1.2e-27 96.6 13.3 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|313125347|ref|YP_004035611.1| - 3e-06 26.5 0.0 9.2e-06 25.0 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|313125347|ref|YP_004035611.1| - 0.12 10.4 14.3 0.17 9.9 14.3 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|313125348|ref|YP_004035612.1| - 9.7e-12 44.7 9.9 2.1e-11 43.6 9.9 1.5 1 0 0 1 1 1 1 Protein export membrane protein Sterol-sensing PF12349.8 gi|313125348|ref|YP_004035612.1| - 0.00054 19.8 3.1 0.001 18.9 3.1 1.4 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation MMPL PF03176.15 gi|313125348|ref|YP_004035612.1| - 0.019 13.9 16.5 0.043 12.8 16.5 1.5 1 0 0 1 1 1 0 MMPL family HSP20 PF00011.21 gi|313125350|ref|YP_004035614.1| - 7.8e-19 67.7 0.0 1e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|313125350|ref|YP_004035614.1| - 4.7e-09 35.7 0.0 6.8e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA RNase_HII PF01351.18 gi|313125351|ref|YP_004035615.1| - 5.9e-41 140.5 0.0 6.8e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII THUMP PF02926.17 gi|313125353|ref|YP_004035617.1| - 5.2e-08 33.1 0.1 1.1e-07 32.1 0.1 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|313125353|ref|YP_004035617.1| - 8.4e-05 22.9 0.3 8.4e-05 22.9 0.3 2.6 3 0 0 3 3 3 1 DnaJ central domain Anti-TRAP PF15777.5 gi|313125353|ref|YP_004035617.1| - 0.015 15.2 0.9 0.015 15.2 0.9 2.5 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF374 PF04028.13 gi|313125354|ref|YP_004035618.1| - 0.028 14.0 0.1 0.078 12.5 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF374) PEP_mutase PF13714.6 gi|313125355|ref|YP_004035619.1| - 6.5e-41 140.4 0.0 8.1e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|313125355|ref|YP_004035619.1| - 9.1e-30 103.6 1.5 2.4e-14 52.7 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family Csm1_N PF18504.1 gi|313125356|ref|YP_004035620.1| - 0.047 14.0 0.1 0.073 13.4 0.1 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain DUF5320 PF17253.2 gi|313125356|ref|YP_004035620.1| - 0.12 13.4 0.0 0.17 12.9 0.0 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5320) ABC_tran PF00005.27 gi|313125357|ref|YP_004035621.1| - 1.9e-30 106.2 0.0 3.3e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125357|ref|YP_004035621.1| - 3.1e-14 53.5 3.1 3.8e-09 36.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313125357|ref|YP_004035621.1| - 7.3e-07 29.8 0.0 3.2e-06 27.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) NTPase_1 PF03266.15 gi|313125357|ref|YP_004035621.1| - 0.0014 18.5 0.1 0.75 9.7 0.0 3.1 3 0 0 3 3 3 1 NTPase AAA_23 PF13476.6 gi|313125357|ref|YP_004035621.1| - 0.003 18.1 0.0 0.0046 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|313125357|ref|YP_004035621.1| - 0.0037 17.0 0.0 2 8.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|313125357|ref|YP_004035621.1| - 0.005 16.6 0.0 0.034 13.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|313125357|ref|YP_004035621.1| - 0.052 13.3 0.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|313125357|ref|YP_004035621.1| - 0.052 13.0 0.0 2.7 7.4 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313125357|ref|YP_004035621.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DLIC PF05783.11 gi|313125357|ref|YP_004035621.1| - 0.084 11.7 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PhdYeFM_antitox PF02604.19 gi|313125357|ref|YP_004035621.1| - 0.14 12.0 0.2 57 3.6 0.0 3.7 4 0 0 4 4 4 0 Antitoxin Phd_YefM, type II toxin-antitoxin system ABC2_membrane PF01061.24 gi|313125358|ref|YP_004035622.1| - 9.5e-32 110.1 19.4 1.3e-31 109.7 19.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|313125358|ref|YP_004035622.1| - 0.00029 20.1 21.8 0.00038 19.7 21.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein G_glu_transpept PF01019.21 gi|313125360|ref|YP_004035624.1| - 1.2e-144 482.9 0.0 1.3e-144 482.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase FUSC_2 PF13515.6 gi|313125361|ref|YP_004035625.1| - 0.018 15.1 1.2 0.019 15.1 1.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein-like Deltameth_res PF16020.5 gi|313125361|ref|YP_004035625.1| - 0.37 10.7 0.2 0.37 10.7 0.2 1.7 2 0 0 2 2 2 0 Deltamethrin resistance Gram_pos_anchor PF00746.21 gi|313125361|ref|YP_004035625.1| - 0.67 9.9 0.0 0.67 9.9 0.0 2.2 2 1 0 2 2 2 0 LPXTG cell wall anchor motif Arrestin_C PF02752.22 gi|313125362|ref|YP_004035626.1| - 0.00079 19.9 0.0 0.0012 19.3 0.0 1.2 1 0 0 1 1 1 1 Arrestin (or S-antigen), C-terminal domain ABC_tran PF00005.27 gi|313125363|ref|YP_004035627.1| - 5.2e-32 111.2 0.0 8.8e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313125363|ref|YP_004035627.1| - 1.1e-16 61.1 0.1 2.1e-16 60.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|313125363|ref|YP_004035627.1| - 3.7e-07 30.5 0.0 2.4e-06 27.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313125363|ref|YP_004035627.1| - 8e-05 23.1 0.0 0.00023 21.6 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain AAA PF00004.29 gi|313125363|ref|YP_004035627.1| - 0.00022 21.6 0.0 0.002 18.6 0.0 2.4 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|313125363|ref|YP_004035627.1| - 0.00024 21.0 0.0 0.061 13.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313125363|ref|YP_004035627.1| - 0.001 18.5 0.0 0.0021 17.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|313125363|ref|YP_004035627.1| - 0.005 16.8 0.0 0.0092 15.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|313125363|ref|YP_004035627.1| - 0.0073 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|313125363|ref|YP_004035627.1| - 0.0078 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|313125363|ref|YP_004035627.1| - 0.0089 16.0 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|313125363|ref|YP_004035627.1| - 0.0099 16.0 0.0 0.027 14.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313125363|ref|YP_004035627.1| - 0.02 14.2 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|313125363|ref|YP_004035627.1| - 0.035 13.3 0.0 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|313125363|ref|YP_004035627.1| - 0.039 13.1 0.0 0.077 12.2 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|313125363|ref|YP_004035627.1| - 0.043 13.7 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|313125363|ref|YP_004035627.1| - 0.048 13.2 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|313125363|ref|YP_004035627.1| - 0.054 12.9 0.0 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|313125363|ref|YP_004035627.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|313125363|ref|YP_004035627.1| - 0.15 11.8 0.0 0.33 10.6 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 gi|313125364|ref|YP_004035628.1| - 2.2e-26 93.0 0.0 4.1e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313125364|ref|YP_004035628.1| - 7.1e-19 68.1 0.1 1.3e-18 67.3 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313125364|ref|YP_004035628.1| - 0.00035 20.5 0.1 0.0016 18.4 0.0 1.9 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313125364|ref|YP_004035628.1| - 0.011 16.0 0.1 0.45 10.8 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|313125364|ref|YP_004035628.1| - 0.093 13.1 0.0 0.21 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|313125364|ref|YP_004035628.1| - 0.2 11.2 0.3 0.74 9.3 0.1 2.0 1 1 1 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|313125365|ref|YP_004035629.1| - 2.5e-31 108.8 6.8 2.5e-31 108.8 6.8 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313125365|ref|YP_004035629.1| - 0.003 17.5 0.2 0.003 17.5 0.2 3.6 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_4 PF12730.7 gi|313125365|ref|YP_004035629.1| - 3.1 7.7 10.4 0.14 12.1 2.1 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein YqhR PF11085.8 gi|313125365|ref|YP_004035629.1| - 3.5 7.5 7.8 5.4 6.9 0.9 2.5 2 0 0 2 2 2 0 Conserved membrane protein YqhR DUF3169 PF11368.8 gi|313125365|ref|YP_004035629.1| - 8.3 5.8 10.7 0.12 11.9 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) BPD_transp_1 PF00528.22 gi|313125366|ref|YP_004035630.1| - 6.8e-48 162.9 11.7 6.8e-48 162.9 11.7 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component Trep_Strep PF09605.10 gi|313125366|ref|YP_004035630.1| - 6.4 6.7 12.3 9.1 6.2 3.4 2.8 2 1 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) SBP_bac_5 PF00496.22 gi|313125367|ref|YP_004035631.1| - 2.6e-68 230.7 7.6 3.5e-68 230.3 7.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313125367|ref|YP_004035631.1| - 0.11 12.3 3.0 0.18 11.7 3.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Methyltrn_RNA_2 PF04013.12 gi|313125368|ref|YP_004035632.1| - 2.6e-62 210.1 0.0 2.8e-62 209.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase FliD_C PF07195.12 gi|313125369|ref|YP_004035633.1| - 0.014 14.9 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF5040 PF16443.5 gi|313125369|ref|YP_004035633.1| - 0.037 13.4 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5040) YdjM PF04307.14 gi|313125370|ref|YP_004035634.1| - 4.4e-10 39.1 24.5 2.8e-08 33.3 24.5 3.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Arylsulfotran_2 PF14269.6 gi|313125371|ref|YP_004035635.1| - 1.6e-10 40.8 3.1 5.7e-07 29.2 0.9 3.2 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|313125371|ref|YP_004035635.1| - 4.8e-06 25.7 3.1 6.3e-05 22.0 2.0 2.9 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|313125371|ref|YP_004035635.1| - 0.00013 21.8 0.5 0.86 9.8 0.3 4.1 3 0 0 3 3 3 1 NHL repeat DUF3185 PF11381.8 gi|313125371|ref|YP_004035635.1| - 1.5 8.8 5.5 0.31 11.1 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) NUDIX PF00293.28 gi|313125372|ref|YP_004035636.1| - 5.1e-14 52.4 0.4 7.2e-14 51.9 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain CPBP PF02517.16 gi|313125373|ref|YP_004035637.1| - 3.1e-17 62.7 2.9 3.1e-17 62.7 2.9 2.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease MCPsignal PF00015.21 gi|313125375|ref|YP_004035639.1| - 2.4e-41 141.4 65.6 1e-40 139.4 23.0 4.7 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|313125375|ref|YP_004035639.1| - 6.6e-07 29.5 43.1 0.025 14.9 1.4 5.9 3 2 2 5 5 5 4 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|313125375|ref|YP_004035639.1| - 0.00023 21.5 2.5 0.0035 17.7 0.1 3.8 3 0 0 3 3 3 1 HAMP domain AAA_13 PF13166.6 gi|313125375|ref|YP_004035639.1| - 0.0049 15.6 39.8 0.12 11.0 20.1 2.2 1 1 1 2 2 2 2 AAA domain Syntaxin-6_N PF09177.11 gi|313125375|ref|YP_004035639.1| - 0.0053 17.3 3.7 0.0053 17.3 3.7 5.1 3 2 2 5 5 5 1 Syntaxin 6, N-terminal Laminin_II PF06009.12 gi|313125375|ref|YP_004035639.1| - 0.031 14.3 47.2 0.32 11.0 1.7 5.3 3 2 2 5 5 5 0 Laminin Domain II DUF1664 PF07889.12 gi|313125375|ref|YP_004035639.1| - 0.042 13.9 39.2 0.22 11.6 2.0 5.2 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|313125375|ref|YP_004035639.1| - 0.048 14.0 37.4 0.056 13.7 4.8 6.1 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|313125375|ref|YP_004035639.1| - 0.063 12.2 44.4 0.022 13.7 13.6 4.2 3 1 1 4 4 4 0 Spc7 kinetochore protein DUF2203 PF09969.9 gi|313125375|ref|YP_004035639.1| - 0.14 12.9 37.4 0.065 14.0 5.2 5.0 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) BLYB PF05289.11 gi|313125375|ref|YP_004035639.1| - 0.32 11.2 3.3 0.26 11.5 0.4 2.2 2 0 0 2 2 2 0 Borrelia hemolysin accessory protein EzrA PF06160.12 gi|313125375|ref|YP_004035639.1| - 0.92 7.6 36.2 0.039 12.1 9.6 3.1 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA Mis12 PF05859.12 gi|313125375|ref|YP_004035639.1| - 0.99 9.5 8.4 2 8.5 0.0 4.2 2 1 1 3 3 3 0 Mis12 protein FPP PF05911.11 gi|313125375|ref|YP_004035639.1| - 1 7.5 42.3 1 7.5 40.2 1.7 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil IFT57 PF10498.9 gi|313125375|ref|YP_004035639.1| - 1.5 7.7 43.3 0.1 11.5 2.0 4.9 3 2 2 5 5 5 0 Intra-flagellar transport protein 57 DUF3584 PF12128.8 gi|313125375|ref|YP_004035639.1| - 1.6 6.1 42.6 0.015 12.8 19.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) APG17 PF04108.12 gi|313125375|ref|YP_004035639.1| - 1.7 7.7 35.7 0.35 9.9 4.1 4.3 1 1 4 5 5 5 0 Autophagy protein Apg17 COG2 PF06148.11 gi|313125375|ref|YP_004035639.1| - 2.1 8.4 35.2 0.75 9.9 0.3 5.7 3 1 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Bacillus_HBL PF05791.11 gi|313125375|ref|YP_004035639.1| - 2.7 7.8 24.7 0.29 10.9 1.6 4.6 3 1 3 6 6 6 0 Bacillus haemolytic enterotoxin (HBL) Sec34 PF04136.15 gi|313125375|ref|YP_004035639.1| - 3.3 7.6 33.7 0.87 9.5 2.8 5.3 3 2 2 5 5 5 0 Sec34-like family ZapB PF06005.12 gi|313125375|ref|YP_004035639.1| - 3.6 8.1 36.8 0.086 13.3 2.5 6.2 2 1 4 6 6 6 0 Cell division protein ZapB bZIP_1 PF00170.21 gi|313125375|ref|YP_004035639.1| - 4 7.6 15.7 3.9 7.6 1.3 4.8 5 0 0 5 5 5 0 bZIP transcription factor SLX9 PF15341.6 gi|313125375|ref|YP_004035639.1| - 4.3 7.7 15.1 0.33 11.4 3.5 3.0 3 0 0 3 3 3 0 Ribosome biogenesis protein SLX9 ATG16 PF08614.11 gi|313125375|ref|YP_004035639.1| - 5 7.3 45.8 1.4 9.1 12.5 3.9 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DASH_Duo1 PF08651.10 gi|313125375|ref|YP_004035639.1| - 7.1 6.5 18.6 6.5 6.6 0.3 5.8 4 2 2 7 7 7 0 DASH complex subunit Duo1 TMPIT PF07851.13 gi|313125375|ref|YP_004035639.1| - 8 5.6 34.3 0.058 12.6 4.3 4.6 2 2 3 5 5 5 0 TMPIT-like protein Mod_r PF07200.13 gi|313125375|ref|YP_004035639.1| - 8.5 6.5 36.6 2.9 8.0 4.5 5.0 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein AIP3 PF03915.13 gi|313125375|ref|YP_004035639.1| - 9.8 5.1 38.6 1 8.3 10.0 3.1 1 1 2 3 3 3 0 Actin interacting protein 3 7TMR-DISM_7TM PF07695.11 gi|313125376|ref|YP_004035640.1| - 0.0018 18.2 0.3 0.002 18.1 0.3 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling NnrS PF05940.12 gi|313125376|ref|YP_004035640.1| - 0.019 14.4 1.6 0.021 14.2 1.6 1.1 1 0 0 1 1 1 0 NnrS protein YhhN PF07947.14 gi|313125376|ref|YP_004035640.1| - 0.047 13.3 1.2 0.057 13.0 1.2 1.1 1 0 0 1 1 1 0 YhhN family TMEM100 PF16311.5 gi|313125376|ref|YP_004035640.1| - 0.91 9.1 3.5 0.63 9.6 2.4 1.4 1 1 0 1 1 1 0 Transmembrane protein 100 DUF2892 PF11127.8 gi|313125376|ref|YP_004035640.1| - 1.8 8.7 8.1 1.8 8.7 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) TGT PF01702.18 gi|313125377|ref|YP_004035641.1| - 1.3e-79 267.9 0.0 1.8e-79 267.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|313125377|ref|YP_004035641.1| - 0.085 13.2 0.0 5.6 7.3 0.0 2.5 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation HTH_5 PF01022.20 gi|313125378|ref|YP_004035642.1| - 3.3e-09 36.5 0.0 4.3e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313125378|ref|YP_004035642.1| - 1.2e-07 31.7 0.2 1.7e-07 31.2 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|313125378|ref|YP_004035642.1| - 0.00021 21.2 0.0 0.00032 20.6 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DprA_WH PF17782.1 gi|313125378|ref|YP_004035642.1| - 0.0019 18.2 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 gi|313125378|ref|YP_004035642.1| - 0.016 14.8 0.0 0.033 13.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313125378|ref|YP_004035642.1| - 0.016 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|313125378|ref|YP_004035642.1| - 0.026 14.4 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|313125378|ref|YP_004035642.1| - 0.037 14.4 0.0 0.041 14.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|313125378|ref|YP_004035642.1| - 0.045 13.6 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|313125378|ref|YP_004035642.1| - 0.049 13.6 0.0 0.083 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|313125378|ref|YP_004035642.1| - 0.073 13.0 0.1 0.099 12.6 0.1 1.2 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.17 gi|313125378|ref|YP_004035642.1| - 0.099 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2089 PF09862.9 gi|313125378|ref|YP_004035642.1| - 0.18 11.9 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) PAS_7 PF12860.7 gi|313125380|ref|YP_004035644.1| - 4e-12 46.3 5.5 0.31 11.2 0.0 5.7 6 0 0 6 6 6 4 PAS fold PGF-CTERM PF18204.1 gi|313125380|ref|YP_004035644.1| - 8.1e-07 28.8 6.8 2.2e-06 27.4 6.8 1.8 1 0 0 1 1 1 1 PGF-CTERM motif PrcB_C PF14343.6 gi|313125380|ref|YP_004035644.1| - 0.00028 21.0 1.6 12 6.1 0.0 5.6 5 1 0 5 5 5 1 PrcB C-terminal Nanovirus_C8 PF05629.11 gi|313125380|ref|YP_004035644.1| - 0.039 14.1 0.0 1.8 8.6 0.0 3.1 4 0 0 4 4 4 0 Nanovirus component 8 (C8) protein DUF4369 PF14289.6 gi|313125380|ref|YP_004035644.1| - 0.056 14.0 4.7 4.3 7.9 0.1 4.8 3 1 2 5 5 5 0 Domain of unknown function (DUF4369) Pyridox_ox_2 PF12900.7 gi|313125381|ref|YP_004035645.1| - 4.4e-08 33.2 0.0 5.1e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|313125381|ref|YP_004035645.1| - 0.0069 16.6 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase APH PF01636.23 gi|313125381|ref|YP_004035645.1| - 0.032 14.2 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Phosphotransferase enzyme family DSHCT PF08148.12 gi|313125381|ref|YP_004035645.1| - 0.077 12.6 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 DSHCT (NUC185) domain DUF5591 PF17884.1 gi|313125382|ref|YP_004035646.1| - 1.9e-58 196.7 0.8 2.8e-58 196.2 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|313125382|ref|YP_004035646.1| - 1.5e-24 85.9 0.0 3.5e-24 84.7 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|313125382|ref|YP_004035646.1| - 1.4e-15 57.3 0.1 4.5e-15 55.7 0.0 1.8 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|313125382|ref|YP_004035646.1| - 4e-12 45.9 0.5 9.3e-12 44.7 0.5 1.6 1 0 0 1 1 1 1 PUA domain ThiS PF02597.20 gi|313125384|ref|YP_004035648.1| - 9.4e-20 71.0 0.2 1e-19 70.9 0.2 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|313125384|ref|YP_004035648.1| - 0.01 16.2 0.0 0.011 16.1 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) DUF5376 PF17346.2 gi|313125385|ref|YP_004035649.1| - 0.24 11.7 0.0 0.34 11.2 0.0 1.2 1 1 0 1 1 1 0 Family of unknown function (DUF5376) ABC_tran PF00005.27 gi|313125387|ref|YP_004035651.1| - 7.4e-13 49.2 0.0 8.7e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|313125387|ref|YP_004035651.1| - 0.00065 19.4 0.1 0.00096 18.8 0.1 1.4 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313125387|ref|YP_004035651.1| - 0.0063 17.0 0.0 0.0076 16.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|313125387|ref|YP_004035651.1| - 0.015 14.3 0.1 0.015 14.3 0.1 1.1 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|313125387|ref|YP_004035651.1| - 0.018 14.6 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|313125387|ref|YP_004035651.1| - 0.02 14.8 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 RsgA GTPase AAA_21 PF13304.6 gi|313125387|ref|YP_004035651.1| - 0.051 13.4 0.0 0.051 13.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|313125387|ref|YP_004035651.1| - 0.058 13.0 0.0 0.078 12.6 0.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|313125387|ref|YP_004035651.1| - 0.071 13.5 0.0 0.071 13.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|313125387|ref|YP_004035651.1| - 0.13 11.8 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|313125387|ref|YP_004035651.1| - 0.16 11.7 0.1 0.2 11.4 0.1 1.1 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.7 gi|313125387|ref|YP_004035651.1| - 0.24 10.3 0.0 0.25 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain DNA_binding_1 PF01035.20 gi|313125388|ref|YP_004035652.1| - 6e-23 80.8 0.1 8.3e-23 80.3 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Methyltransf_2 PF00891.18 gi|313125390|ref|YP_004035654.1| - 7.3e-20 71.2 0.0 9.4e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|313125390|ref|YP_004035654.1| - 2.7e-07 30.5 0.0 7.1e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_23 PF13489.6 gi|313125390|ref|YP_004035654.1| - 8.6e-07 28.9 0.0 3.2e-06 27.1 0.0 1.8 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125390|ref|YP_004035654.1| - 5.8e-06 27.0 0.0 1.5e-05 25.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313125390|ref|YP_004035654.1| - 1.3e-05 25.8 0.0 3e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Dimerisation PF08100.11 gi|313125390|ref|YP_004035654.1| - 0.00019 21.4 0.0 0.00048 20.1 0.0 1.6 1 0 0 1 1 1 1 Dimerisation domain MTS PF05175.14 gi|313125390|ref|YP_004035654.1| - 0.017 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|313125390|ref|YP_004035654.1| - 0.033 14.8 0.0 0.066 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain HTH_10 PF04967.12 gi|313125391|ref|YP_004035655.1| - 3.8e-17 61.8 0.0 5.9e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|313125391|ref|YP_004035655.1| - 0.023 14.9 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|313125391|ref|YP_004035655.1| - 0.058 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313125391|ref|YP_004035655.1| - 0.063 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family OrfB_IS605 PF01385.19 gi|313125392|ref|YP_004035656.1| - 2.8e-26 92.1 0.0 6.6e-26 90.9 0.0 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313125392|ref|YP_004035656.1| - 3.8e-20 71.6 2.2 7.6e-20 70.6 1.3 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|313125392|ref|YP_004035656.1| - 0.0003 21.1 1.1 0.00078 19.7 1.1 1.7 1 0 0 1 1 1 1 C1 domain Abhydrolase_6 PF12697.7 gi|313125393|ref|YP_004035657.1| - 2.9e-20 73.8 7.5 3.4e-20 73.6 7.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|313125393|ref|YP_004035657.1| - 1.8e-11 44.2 0.0 5.1e-09 36.1 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|313125393|ref|YP_004035657.1| - 3.7e-09 36.2 0.1 1.7e-08 34.0 0.1 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|313125393|ref|YP_004035657.1| - 2.9e-06 27.6 0.0 5.9e-06 26.6 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_8 PF06259.12 gi|313125393|ref|YP_004035657.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase Esterase PF00756.20 gi|313125393|ref|YP_004035657.1| - 0.0056 16.4 0.1 0.036 13.7 0.0 2.0 2 0 0 2 2 2 1 Putative esterase Ser_hydrolase PF06821.13 gi|313125393|ref|YP_004035657.1| - 0.0057 16.5 0.0 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 Serine hydrolase Abhydrolase_4 PF08386.10 gi|313125393|ref|YP_004035657.1| - 0.095 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein DUF1057 PF06342.12 gi|313125393|ref|YP_004035657.1| - 0.15 11.0 0.0 0.37 9.8 0.0 1.5 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1057) Complex1_51K PF01512.17 gi|313125394|ref|YP_004035658.1| - 3.3e-20 72.5 0.0 5.1e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|313125394|ref|YP_004035658.1| - 5e-05 23.2 0.2 0.0001 22.2 0.2 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|313125394|ref|YP_004035658.1| - 0.015 15.2 0.1 0.035 13.9 0.1 1.6 1 0 0 1 1 1 0 Biotin-requiring enzyme MFS_MOT1 PF16983.5 gi|313125396|ref|YP_004035660.1| - 4.2e-40 136.6 37.8 5.9e-23 81.4 10.7 3.3 3 0 0 3 3 3 2 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|313125396|ref|YP_004035660.1| - 6.1e-09 35.1 22.8 1.2e-08 34.1 7.9 2.5 1 1 1 2 2 2 2 Sulfate permease family Glyco_transf_24 PF18404.1 gi|313125396|ref|YP_004035660.1| - 0.16 11.3 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 Glucosyltransferase 24 AzlC PF03591.14 gi|313125397|ref|YP_004035661.1| - 5.4e-40 137.0 7.0 5.4e-40 137.0 7.0 1.8 2 0 0 2 2 2 1 AzlC protein Peptidase_M48_N PF16491.5 gi|313125397|ref|YP_004035661.1| - 0.058 13.3 0.3 0.058 13.3 0.3 1.8 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices AzlD PF05437.12 gi|313125398|ref|YP_004035662.1| - 4.5e-21 74.9 12.2 4e-20 71.8 12.2 1.9 1 1 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AFOR_C PF01314.18 gi|313125399|ref|YP_004035663.1| - 4.7e-118 394.5 2.2 5.9e-118 394.2 2.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|313125399|ref|YP_004035663.1| - 1.3e-74 250.4 0.1 1.8e-74 249.9 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH3_4 PF06347.13 gi|313125401|ref|YP_004035665.1| - 0.0019 18.0 0.2 0.0022 17.8 0.2 1.1 1 0 0 1 1 1 1 Bacterial SH3 domain SH3_3 PF08239.11 gi|313125401|ref|YP_004035665.1| - 0.046 14.0 0.3 0.051 13.9 0.3 1.1 1 0 0 1 1 1 0 Bacterial SH3 domain Methyltransf_11 PF08241.12 gi|313125402|ref|YP_004035666.1| - 4e-21 75.5 0.0 8e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313125402|ref|YP_004035666.1| - 3.5e-20 72.5 0.1 9.6e-20 71.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125402|ref|YP_004035666.1| - 6.8e-18 64.9 0.0 9.6e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125402|ref|YP_004035666.1| - 1.5e-12 48.1 0.0 2.8e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313125402|ref|YP_004035666.1| - 2.2e-12 47.2 0.0 3.3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313125402|ref|YP_004035666.1| - 5.1e-12 45.6 0.0 8.7e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|313125402|ref|YP_004035666.1| - 9.7e-08 32.0 0.0 1.8e-07 31.1 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|313125402|ref|YP_004035666.1| - 2.2e-07 30.4 0.0 3.4e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase CheR PF01739.18 gi|313125402|ref|YP_004035666.1| - 0.024 14.1 0.0 0.92 9.0 0.0 2.1 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain MetW PF07021.12 gi|313125402|ref|YP_004035666.1| - 0.027 14.1 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW NodS PF05401.11 gi|313125402|ref|YP_004035666.1| - 0.054 13.1 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Fibrillarin PF01269.17 gi|313125402|ref|YP_004035666.1| - 0.061 12.4 0.0 0.092 11.8 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_8 PF05148.15 gi|313125402|ref|YP_004035666.1| - 0.093 12.6 0.1 0.19 11.5 0.1 1.5 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|313125402|ref|YP_004035666.1| - 0.16 11.5 0.0 0.25 10.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain GATase_5 PF13507.6 gi|313125403|ref|YP_004035667.1| - 1.8e-44 151.8 0.0 2.4e-44 151.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|313125403|ref|YP_004035667.1| - 1.3e-06 28.4 0.0 1.6e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|313125403|ref|YP_004035667.1| - 7e-06 25.8 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|313125403|ref|YP_004035667.1| - 0.00095 19.0 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family PurS PF02700.14 gi|313125404|ref|YP_004035668.1| - 1.2e-25 89.5 0.1 1.3e-25 89.3 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase SIMPL PF04402.14 gi|313125404|ref|YP_004035668.1| - 0.0095 16.4 0.3 0.0098 16.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Formyl_trans_N PF00551.19 gi|313125405|ref|YP_004035669.1| - 8.6e-40 136.4 0.0 1.3e-39 135.8 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|313125405|ref|YP_004035669.1| - 2e-07 30.9 0.3 4.3e-07 29.8 0.3 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|313125405|ref|YP_004035669.1| - 5e-06 26.2 0.1 1.8e-05 24.4 0.1 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|313125405|ref|YP_004035669.1| - 0.00015 22.2 0.1 0.0013 19.2 0.1 2.3 2 0 0 2 2 2 1 ACT domain SAICAR_synt PF01259.18 gi|313125406|ref|YP_004035670.1| - 3.5e-25 89.1 0.0 3.6e-24 85.8 0.0 1.9 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.6 gi|313125406|ref|YP_004035670.1| - 0.022 14.8 0.1 0.051 13.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) SIR2 PF02146.17 gi|313125407|ref|YP_004035671.1| - 1.4e-39 135.9 0.0 1.7e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|313125407|ref|YP_004035671.1| - 0.0025 17.5 0.0 0.048 13.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Acetyltransf_1 PF00583.25 gi|313125408|ref|YP_004035672.1| - 1.3e-17 64.1 0.1 1.5e-17 63.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313125408|ref|YP_004035672.1| - 8.2e-15 54.9 0.0 1e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313125408|ref|YP_004035672.1| - 2.2e-07 31.2 0.0 2.9e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313125408|ref|YP_004035672.1| - 9.9e-07 29.0 0.0 1.4e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313125408|ref|YP_004035672.1| - 0.00012 22.0 0.0 0.00018 21.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|313125408|ref|YP_004035672.1| - 0.07 13.3 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4597 PF15366.6 gi|313125408|ref|YP_004035672.1| - 0.13 12.0 0.1 4.3 7.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4597) HisKA_7TM PF16927.5 gi|313125409|ref|YP_004035673.1| - 1.6e-48 165.7 24.4 2e-48 165.4 24.4 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|313125409|ref|YP_004035673.1| - 2.9e-16 59.7 1.0 2.9e-16 59.7 1.0 1.8 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|313125409|ref|YP_004035673.1| - 5.7e-16 59.0 0.1 1.3e-15 57.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313125409|ref|YP_004035673.1| - 6.6e-14 51.7 1.7 8.1e-14 51.4 0.3 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|313125409|ref|YP_004035673.1| - 1.7e-09 37.6 0.1 4.4e-09 36.3 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|313125409|ref|YP_004035673.1| - 5e-09 36.4 0.2 2.2e-08 34.3 0.1 2.1 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|313125409|ref|YP_004035673.1| - 1.1e-07 31.7 0.3 4e-07 29.9 0.3 2.0 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|313125409|ref|YP_004035673.1| - 0.0002 21.5 0.8 0.0018 18.5 0.3 2.7 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|313125409|ref|YP_004035673.1| - 0.0024 17.8 0.1 0.0062 16.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|313125409|ref|YP_004035673.1| - 0.027 14.2 0.0 0.063 13.0 0.0 1.6 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain M20_dimer PF07687.14 gi|313125409|ref|YP_004035673.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase dimerisation domain Radical_SAM PF04055.21 gi|313125410|ref|YP_004035674.1| - 5.4e-12 46.4 0.1 9.5e-12 45.6 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily YdjM PF04307.14 gi|313125411|ref|YP_004035675.1| - 3e-06 26.7 13.4 3.5e-05 23.2 13.4 2.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4149 PF13664.6 gi|313125411|ref|YP_004035675.1| - 0.85 10.0 7.5 0.052 13.9 2.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) YdjM PF04307.14 gi|313125412|ref|YP_004035676.1| - 1.6e-07 30.8 13.4 3.1e-06 26.6 13.2 2.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|313125412|ref|YP_004035676.1| - 0.0053 16.5 1.8 0.0094 15.7 1.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4184) Methyltransf_11 PF08241.12 gi|313125413|ref|YP_004035677.1| - 1.2e-15 57.9 0.0 1.9e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313125413|ref|YP_004035677.1| - 1.9e-15 57.3 0.0 3.7e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125413|ref|YP_004035677.1| - 2e-15 56.9 0.0 2.2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125413|ref|YP_004035677.1| - 3.4e-13 50.2 0.0 4.9e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|313125413|ref|YP_004035677.1| - 3e-09 36.7 0.0 5.2e-09 35.9 0.0 1.3 2 0 0 2 2 2 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|313125413|ref|YP_004035677.1| - 6.5e-09 35.5 0.0 8.8e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|313125413|ref|YP_004035677.1| - 4.6e-07 29.5 0.0 9.9e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase GidB PF02527.15 gi|313125413|ref|YP_004035677.1| - 2.1e-06 27.2 0.0 2.8e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_23 PF13489.6 gi|313125413|ref|YP_004035677.1| - 2.3e-06 27.5 0.0 2.7e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|313125413|ref|YP_004035677.1| - 4.2e-06 26.7 0.0 4.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|313125413|ref|YP_004035677.1| - 9.4e-06 25.6 0.0 1.2e-05 25.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|313125413|ref|YP_004035677.1| - 4.2e-05 23.4 0.0 7.2e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|313125413|ref|YP_004035677.1| - 0.00034 20.6 0.0 0.00042 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|313125413|ref|YP_004035677.1| - 0.0015 19.5 0.0 0.0025 18.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|313125413|ref|YP_004035677.1| - 0.0021 17.7 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|313125413|ref|YP_004035677.1| - 0.0033 16.6 0.0 0.0037 16.4 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.20 gi|313125413|ref|YP_004035677.1| - 0.0055 15.8 0.0 0.0067 15.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|313125413|ref|YP_004035677.1| - 0.0059 16.0 0.0 0.0078 15.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|313125413|ref|YP_004035677.1| - 0.0066 15.8 0.0 0.0086 15.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|313125413|ref|YP_004035677.1| - 0.015 15.4 0.0 0.063 13.4 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase DUF938 PF06080.12 gi|313125413|ref|YP_004035677.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Radical_SAM PF04055.21 gi|313125414|ref|YP_004035678.1| - 4.8e-16 59.6 0.0 7.9e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CofC PF01983.16 gi|313125415|ref|YP_004035679.1| - 5.4e-39 133.6 0.0 6.2e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|313125415|ref|YP_004035679.1| - 8.1e-05 23.0 2.3 9.4e-05 22.8 2.3 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF1771 PF08590.10 gi|313125416|ref|YP_004035680.1| - 0.0019 18.5 2.0 0.0019 18.5 2.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF1771) DUF1411 PF07199.11 gi|313125416|ref|YP_004035680.1| - 0.0035 17.0 0.3 0.0076 15.9 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1411) PTS_IIA PF02255.16 gi|313125416|ref|YP_004035680.1| - 0.0064 16.5 1.3 0.012 15.6 1.3 1.5 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIA subunit DUF4878 PF12870.7 gi|313125416|ref|YP_004035680.1| - 0.012 15.9 0.4 0.039 14.2 0.4 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) TrbC PF04956.13 gi|313125416|ref|YP_004035680.1| - 0.028 14.6 1.4 3.3 8.0 0.2 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF4398 PF14346.6 gi|313125416|ref|YP_004035680.1| - 0.039 14.6 10.2 0.15 12.7 10.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) PspA_IM30 PF04012.12 gi|313125416|ref|YP_004035680.1| - 0.042 13.4 4.6 0.072 12.7 4.6 1.4 1 0 0 1 1 1 0 PspA/IM30 family TPR_16 PF13432.6 gi|313125416|ref|YP_004035680.1| - 0.082 13.6 1.3 0.16 12.6 1.3 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPPK_C PF12555.8 gi|313125416|ref|YP_004035680.1| - 0.42 10.7 2.9 10 6.2 0.1 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Tubulin PF00091.25 gi|313125417|ref|YP_004035681.1| - 6.5e-27 95.0 0.0 1.4e-26 93.9 0.0 1.6 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|313125417|ref|YP_004035681.1| - 0.013 14.7 0.3 0.029 13.6 0.2 1.5 1 1 0 1 1 1 0 Tubulin like Mu-like_Pro PF10123.9 gi|313125417|ref|YP_004035681.1| - 0.091 12.3 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Mu-like prophage I protein NAD_binding_10 PF13460.6 gi|313125418|ref|YP_004035682.1| - 6.2e-28 97.9 0.0 8.9e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|313125418|ref|YP_004035682.1| - 1.9e-19 70.1 0.0 1.2e-18 67.5 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313125418|ref|YP_004035682.1| - 1e-13 50.9 0.0 4.5e-12 45.6 0.0 2.2 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|313125418|ref|YP_004035682.1| - 1.5e-13 50.5 0.0 6.6e-12 45.1 0.0 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|313125418|ref|YP_004035682.1| - 2.4e-11 43.6 0.0 3.1e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|313125418|ref|YP_004035682.1| - 7.6e-07 28.8 0.0 1.3e-05 24.8 0.0 2.2 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|313125418|ref|YP_004035682.1| - 8e-06 25.2 0.0 0.0063 15.7 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|313125418|ref|YP_004035682.1| - 6e-05 22.3 0.2 0.00035 19.8 0.2 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_2 PF03446.15 gi|313125418|ref|YP_004035682.1| - 0.00037 20.7 0.0 0.0027 17.9 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.6 gi|313125418|ref|YP_004035682.1| - 0.0019 18.2 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Semialdhyde_dh PF01118.24 gi|313125418|ref|YP_004035682.1| - 0.0063 16.9 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|313125418|ref|YP_004035682.1| - 0.015 15.8 0.0 0.041 14.4 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase KR PF08659.10 gi|313125418|ref|YP_004035682.1| - 0.021 14.8 0.0 0.44 10.4 0.0 2.1 2 0 0 2 2 2 0 KR domain Glyco_trans_4_4 PF13579.6 gi|313125418|ref|YP_004035682.1| - 0.022 15.2 0.0 0.044 14.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain adh_short PF00106.25 gi|313125418|ref|YP_004035682.1| - 0.037 13.5 0.0 0.074 12.5 0.0 1.4 1 1 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|313125418|ref|YP_004035682.1| - 0.043 13.9 0.0 0.069 13.3 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Thymidylate_kin PF02223.17 gi|313125419|ref|YP_004035683.1| - 8e-38 130.0 0.0 9.6e-38 129.7 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|313125419|ref|YP_004035683.1| - 1.7e-06 28.0 0.0 2.3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|313125419|ref|YP_004035683.1| - 2.7e-06 27.6 0.0 5.2e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|313125419|ref|YP_004035683.1| - 0.00057 20.2 0.2 0.00074 19.8 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|313125419|ref|YP_004035683.1| - 0.00085 19.9 0.0 0.0023 18.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain YqhR PF11085.8 gi|313125420|ref|YP_004035684.1| - 0.19 11.7 6.1 0.21 11.5 6.1 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2070 PF09843.9 gi|313125420|ref|YP_004035684.1| - 7.2 4.8 8.1 7.8 4.7 8.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) E1_dh PF00676.20 gi|313125421|ref|YP_004035685.1| - 3e-71 239.8 0.0 3.9e-71 239.4 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.21 gi|313125421|ref|YP_004035685.1| - 5.8e-05 22.2 0.0 9.1e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|313125421|ref|YP_004035685.1| - 0.00074 18.8 0.0 0.0014 17.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|313125421|ref|YP_004035685.1| - 0.002 17.9 1.4 0.027 14.2 0.3 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AsnC_trans_reg PF01037.21 gi|313125423|ref|YP_004035687.1| - 6.4e-11 42.1 0.2 7.2e-11 41.9 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrkA_N PF02254.18 gi|313125424|ref|YP_004035688.1| - 6.6e-25 87.6 1.0 8.6e-25 87.3 0.5 1.5 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|313125424|ref|YP_004035688.1| - 1.3e-07 31.4 0.9 2e-07 30.7 0.1 1.8 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|313125424|ref|YP_004035688.1| - 4e-06 27.2 0.3 8e-06 26.2 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|313125424|ref|YP_004035688.1| - 0.00037 20.1 0.0 0.00068 19.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|313125424|ref|YP_004035688.1| - 0.00039 20.9 0.1 0.001 19.6 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|313125424|ref|YP_004035688.1| - 0.00051 19.4 0.2 0.00082 18.7 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|313125424|ref|YP_004035688.1| - 0.001 18.4 0.2 0.0014 17.9 0.2 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.12 gi|313125424|ref|YP_004035688.1| - 0.0017 17.9 0.2 0.0086 15.7 0.0 2.2 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|313125424|ref|YP_004035688.1| - 0.0025 17.7 0.1 0.0061 16.5 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|313125424|ref|YP_004035688.1| - 0.0053 16.4 0.3 0.0077 15.9 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_2 PF03446.15 gi|313125424|ref|YP_004035688.1| - 0.009 16.2 0.0 0.66 10.1 0.0 2.5 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_8 PF13450.6 gi|313125424|ref|YP_004035688.1| - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|313125424|ref|YP_004035688.1| - 0.012 15.3 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CutC PF03932.14 gi|313125424|ref|YP_004035688.1| - 0.016 14.7 0.0 0.032 13.7 0.0 1.5 1 0 0 1 1 1 0 CutC family Sacchrp_dh_NADP PF03435.18 gi|313125424|ref|YP_004035688.1| - 0.027 14.7 0.2 0.043 14.1 0.2 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|313125424|ref|YP_004035688.1| - 0.031 13.5 0.1 0.033 13.4 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain AsnC_trans_reg PF01037.21 gi|313125425|ref|YP_004035689.1| - 3.9e-09 36.3 0.2 5e-09 36.0 0.2 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|313125425|ref|YP_004035689.1| - 0.0013 18.7 0.4 0.0014 18.6 0.4 1.1 1 0 0 1 1 1 1 GYD domain IF-2 PF11987.8 gi|313125425|ref|YP_004035689.1| - 0.063 13.4 0.6 0.078 13.1 0.6 1.3 1 0 0 1 1 1 0 Translation-initiation factor 2 HAMP PF00672.25 gi|313125425|ref|YP_004035689.1| - 0.12 12.8 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 HAMP domain MCPsignal PF00015.21 gi|313125427|ref|YP_004035691.1| - 8.5e-38 129.9 54.6 1.1e-36 126.2 24.6 4.4 2 2 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|313125427|ref|YP_004035691.1| - 9.2e-11 42.0 16.3 1e-09 38.6 0.9 5.5 5 2 0 5 5 5 1 HAMP domain dCache_1 PF02743.18 gi|313125427|ref|YP_004035691.1| - 4.8e-09 36.4 0.0 4.8e-09 36.4 0.0 3.8 4 0 0 4 4 4 1 Cache domain BLOC1_2 PF10046.9 gi|313125427|ref|YP_004035691.1| - 5.3e-07 29.9 20.9 0.18 12.1 0.1 5.4 4 1 1 5 5 5 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|313125427|ref|YP_004035691.1| - 1.1e-06 28.8 37.7 0.0043 17.3 1.3 7.1 5 2 1 7 7 7 4 Bacterial protein of unknown function (DUF948) DUF677 PF05055.12 gi|313125427|ref|YP_004035691.1| - 0.0072 15.3 15.9 0.063 12.2 4.1 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF677) Seryl_tRNA_N PF02403.22 gi|313125427|ref|YP_004035691.1| - 0.013 15.7 2.7 0.013 15.7 2.7 5.5 3 2 1 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Syntaxin-6_N PF09177.11 gi|313125427|ref|YP_004035691.1| - 0.045 14.3 25.0 0.064 13.8 0.5 5.6 2 2 2 4 4 4 0 Syntaxin 6, N-terminal DUF1664 PF07889.12 gi|313125427|ref|YP_004035691.1| - 0.1 12.6 27.3 0.59 10.2 3.1 5.2 3 2 2 6 6 5 0 Protein of unknown function (DUF1664) Cauli_AT PF03233.13 gi|313125427|ref|YP_004035691.1| - 0.51 10.3 4.6 13 5.7 0.2 4.1 3 2 1 4 4 4 0 Aphid transmission protein LapA_dom PF06305.11 gi|313125427|ref|YP_004035691.1| - 0.52 10.2 3.2 0.4 10.5 0.4 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain EzrA PF06160.12 gi|313125427|ref|YP_004035691.1| - 0.98 7.5 14.0 0.13 10.4 3.5 2.9 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA Prominin PF05478.11 gi|313125427|ref|YP_004035691.1| - 1.1 7.2 9.0 0.4 8.6 5.4 1.9 1 1 1 2 2 2 0 Prominin V_ATPase_I PF01496.19 gi|313125427|ref|YP_004035691.1| - 3 5.6 18.0 2.6 5.9 8.4 2.6 2 1 0 2 2 2 0 V-type ATPase 116kDa subunit family RPW8 PF05659.11 gi|313125427|ref|YP_004035691.1| - 4.3 7.0 4.8 67 3.2 0.0 4.1 4 1 1 5 5 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Taxilin PF09728.9 gi|313125427|ref|YP_004035691.1| - 5.3 6.1 8.2 1 8.5 1.7 2.6 3 0 0 3 3 3 0 Myosin-like coiled-coil protein Tweety PF04906.13 gi|313125427|ref|YP_004035691.1| - 7.1 5.2 11.9 3.1 6.4 0.7 3.5 3 1 1 4 4 4 0 Tweety AAA_13 PF13166.6 gi|313125427|ref|YP_004035691.1| - 7.8 5.0 23.6 4.7 5.7 12.0 2.5 1 1 1 2 2 2 0 AAA domain IncD PF17628.2 gi|313125428|ref|YP_004035692.1| - 0.8 9.5 5.6 0.92 9.3 5.6 1.0 1 0 0 1 1 1 0 Inclusion membrane protein D CARDB PF07705.11 gi|313125429|ref|YP_004035693.1| - 0.0026 18.0 0.2 0.0067 16.7 0.1 1.7 2 0 0 2 2 2 1 CARDB DUF3558 PF12079.8 gi|313125429|ref|YP_004035693.1| - 0.2 11.6 4.9 0.7 9.9 4.9 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) SBP_bac_5 PF00496.22 gi|313125430|ref|YP_004035694.1| - 2.4e-68 230.9 2.2 3e-68 230.5 2.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313125430|ref|YP_004035694.1| - 0.081 12.8 2.0 0.13 12.1 2.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.6 gi|313125431|ref|YP_004035695.1| - 0.0011 19.6 0.9 0.0024 18.5 0.7 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Pro_isomerase PF00160.21 gi|313125432|ref|YP_004035696.1| - 6e-52 176.1 0.0 6.6e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AstE_AspA PF04952.14 gi|313125433|ref|YP_004035697.1| - 1.2e-39 136.2 0.0 1.3e-39 136.0 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|313125433|ref|YP_004035697.1| - 0.047 13.5 0.0 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Zinc carboxypeptidase Peptidase_M20 PF01546.28 gi|313125434|ref|YP_004035698.1| - 2.2e-19 70.0 4.4 3.4e-19 69.4 4.4 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|313125434|ref|YP_004035698.1| - 5.7e-14 52.0 0.4 1.3e-13 50.8 0.4 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Glycos_transf_3 PF00591.21 gi|313125435|ref|YP_004035699.1| - 3.9e-31 108.6 0.0 8e-31 107.5 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|313125435|ref|YP_004035699.1| - 1.3e-07 31.3 0.7 5.4e-07 29.4 0.1 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF455 PF04305.14 gi|313125435|ref|YP_004035699.1| - 0.013 15.0 0.1 0.022 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF455) DndE PF08870.11 gi|313125435|ref|YP_004035699.1| - 0.16 12.2 0.1 0.45 10.8 0.0 1.7 2 0 0 2 2 2 0 DNA sulphur modification protein DndE AsnC_trans_reg2 PF17805.1 gi|313125436|ref|YP_004035700.1| - 4.9e-44 148.4 0.0 1.3e-20 73.3 0.0 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|313125436|ref|YP_004035700.1| - 2.2e-08 33.8 2.3 0.00013 21.7 0.0 3.0 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|313125436|ref|YP_004035700.1| - 0.0064 16.0 0.0 3.5 7.3 0.0 2.9 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding DUF4407 PF14362.6 gi|313125439|ref|YP_004035703.1| - 0.18 11.1 1.0 0.25 10.7 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PHP_C PF13263.6 gi|313125440|ref|YP_004035704.1| - 7.9e-21 73.6 0.1 2e-20 72.3 0.1 1.8 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|313125440|ref|YP_004035704.1| - 7.1e-07 29.7 0.0 7.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 PHP domain Rieske PF00355.26 gi|313125441|ref|YP_004035705.1| - 7.3e-13 48.3 0.0 1.4e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|313125441|ref|YP_004035705.1| - 3.4e-10 39.8 0.0 6.3e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Amino_oxidase PF01593.24 gi|313125442|ref|YP_004035706.1| - 3e-20 73.0 2.2 1.5e-11 44.3 0.7 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|313125442|ref|YP_004035706.1| - 1e-14 54.5 0.3 2e-14 53.5 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|313125442|ref|YP_004035706.1| - 3.1e-05 23.4 5.4 0.00018 20.8 1.1 2.8 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313125442|ref|YP_004035706.1| - 0.00016 22.1 0.8 0.0013 19.3 0.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|313125442|ref|YP_004035706.1| - 0.00021 21.0 0.1 0.068 12.8 0.1 2.2 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.7 gi|313125442|ref|YP_004035706.1| - 0.00029 20.3 0.2 0.0005 19.5 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|313125442|ref|YP_004035706.1| - 0.00053 19.7 7.7 0.00066 19.4 6.1 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|313125442|ref|YP_004035706.1| - 0.0006 19.2 1.5 0.00099 18.4 1.5 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|313125442|ref|YP_004035706.1| - 0.0026 17.6 0.1 0.004 17.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|313125442|ref|YP_004035706.1| - 0.0062 15.8 1.5 0.018 14.3 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|313125442|ref|YP_004035706.1| - 0.0077 15.4 5.2 0.015 14.4 4.6 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|313125442|ref|YP_004035706.1| - 0.0088 14.8 2.9 0.012 14.3 2.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|313125442|ref|YP_004035706.1| - 0.014 14.7 0.9 0.025 13.8 0.9 1.4 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|313125442|ref|YP_004035706.1| - 0.015 14.4 2.6 0.033 13.3 2.3 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Rossmann-like PF10727.9 gi|313125442|ref|YP_004035706.1| - 0.025 14.4 0.2 0.054 13.4 0.2 1.6 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_9 PF13454.6 gi|313125442|ref|YP_004035706.1| - 0.027 14.5 0.1 0.39 10.7 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|313125442|ref|YP_004035706.1| - 0.091 12.0 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|313125442|ref|YP_004035706.1| - 0.14 12.4 0.1 0.3 11.4 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Prenylcys_lyase PF07156.14 gi|313125442|ref|YP_004035706.1| - 0.2 10.7 0.0 0.27 10.3 0.0 1.1 1 0 0 1 1 1 0 Prenylcysteine lyase HAD_2 PF13419.6 gi|313125443|ref|YP_004035707.1| - 1.2e-15 58.0 0.0 2.1e-15 57.2 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125443|ref|YP_004035707.1| - 4.9e-11 42.5 0.0 1e-10 41.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|313125443|ref|YP_004035707.1| - 6.9e-08 33.0 0.1 1.1e-06 29.1 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313125443|ref|YP_004035707.1| - 3.2e-06 27.7 1.3 4.2e-06 27.3 1.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase PF06745.13 gi|313125445|ref|YP_004035709.1| - 5.6e-42 143.7 0.0 6.3e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|313125445|ref|YP_004035709.1| - 1.8e-06 27.6 0.0 3.1e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|313125445|ref|YP_004035709.1| - 8.1e-06 25.3 0.0 1.2e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|313125445|ref|YP_004035709.1| - 1.6e-05 24.8 0.0 3.7e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|313125445|ref|YP_004035709.1| - 1.7e-05 23.7 0.0 4.7e-05 22.2 0.0 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|313125445|ref|YP_004035709.1| - 8.6e-05 22.1 0.0 0.00056 19.4 0.0 2.0 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|313125445|ref|YP_004035709.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313125445|ref|YP_004035709.1| - 0.0016 18.6 0.1 0.0036 17.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|313125445|ref|YP_004035709.1| - 0.0017 18.7 0.0 0.0027 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|313125445|ref|YP_004035709.1| - 0.0024 17.6 0.0 0.0051 16.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein T2SSE PF00437.20 gi|313125445|ref|YP_004035709.1| - 0.0032 16.6 0.2 0.25 10.4 0.1 2.1 1 1 1 2 2 2 1 Type II/IV secretion system protein cobW PF02492.19 gi|313125445|ref|YP_004035709.1| - 0.0081 15.8 0.0 0.018 14.6 0.0 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|313125445|ref|YP_004035709.1| - 0.0083 16.4 0.1 0.022 15.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313125445|ref|YP_004035709.1| - 0.011 15.5 0.1 0.035 13.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|313125445|ref|YP_004035709.1| - 0.014 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|313125445|ref|YP_004035709.1| - 0.017 14.8 0.0 0.058 13.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|313125445|ref|YP_004035709.1| - 0.018 15.6 0.1 0.028 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313125445|ref|YP_004035709.1| - 0.023 14.7 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313125445|ref|YP_004035709.1| - 0.024 15.1 0.0 0.046 14.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Glyco_hydro_18 PF00704.28 gi|313125445|ref|YP_004035709.1| - 0.027 14.2 0.0 0.029 14.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 18 DAP3 PF10236.9 gi|313125445|ref|YP_004035709.1| - 0.034 13.3 0.0 0.067 12.3 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_16 PF13191.6 gi|313125445|ref|YP_004035709.1| - 0.034 14.5 0.1 0.064 13.6 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|313125445|ref|YP_004035709.1| - 0.044 14.0 0.0 0.11 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|313125445|ref|YP_004035709.1| - 0.075 12.3 0.0 0.17 11.1 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin PAXNEB PF05625.11 gi|313125445|ref|YP_004035709.1| - 0.098 11.8 0.0 2.1 7.4 0.0 2.0 2 0 0 2 2 2 0 PAXNEB protein TsaE PF02367.17 gi|313125445|ref|YP_004035709.1| - 0.14 12.2 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SelR PF01641.18 gi|313125447|ref|YP_004035711.1| - 5.4e-52 175.0 0.0 6.2e-52 174.8 0.0 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_2 PF13240.6 gi|313125447|ref|YP_004035711.1| - 0.013 15.2 2.7 1.5 8.7 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Yippee-Mis18 PF03226.14 gi|313125447|ref|YP_004035711.1| - 0.052 13.8 0.2 0.14 12.4 0.2 1.7 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DZR PF12773.7 gi|313125447|ref|YP_004035711.1| - 0.1 12.6 2.1 0.51 10.4 2.1 2.1 1 1 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.11 gi|313125447|ref|YP_004035711.1| - 0.12 12.4 0.0 0.12 12.4 0.0 2.9 3 1 1 4 4 4 0 Domain of unknown function (DUF1610) GATA PF00320.27 gi|313125447|ref|YP_004035711.1| - 0.15 11.7 2.8 9.4 5.9 0.1 2.6 3 0 0 3 3 3 0 GATA zinc finger TF_Zn_Ribbon PF08271.12 gi|313125447|ref|YP_004035711.1| - 0.18 11.3 6.4 0.93 9.1 0.2 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|313125447|ref|YP_004035711.1| - 0.27 11.4 1.8 2.1 8.6 0.1 2.4 2 0 0 2 2 2 0 Ribosomal protein L37e MCPsignal PF00015.21 gi|313125449|ref|YP_004035713.1| - 1.3e-41 142.3 28.5 1.3e-41 142.3 28.5 3.8 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|313125449|ref|YP_004035713.1| - 9.7e-13 48.3 5.7 2.3e-09 37.5 0.8 4.0 3 0 0 3 3 3 2 HAMP domain dCache_1 PF02743.18 gi|313125449|ref|YP_004035713.1| - 1.1e-05 25.4 0.2 1.1e-05 25.4 0.2 3.7 3 1 0 3 3 3 1 Cache domain DUF5089 PF17002.5 gi|313125449|ref|YP_004035713.1| - 0.0074 16.2 10.8 0.0074 16.2 10.8 2.0 2 1 0 2 2 1 1 Domain of unknown function (DUF5089) Vps54_N PF10475.9 gi|313125449|ref|YP_004035713.1| - 0.014 14.7 0.8 0.047 13.0 0.8 1.9 1 0 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex Phage_Mu_Gp45 PF06890.12 gi|313125449|ref|YP_004035713.1| - 0.019 14.7 0.1 0.073 12.8 0.1 2.0 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein RPW8 PF05659.11 gi|313125449|ref|YP_004035713.1| - 0.019 14.6 1.2 16 5.2 0.1 3.7 3 1 0 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 IFT57 PF10498.9 gi|313125449|ref|YP_004035713.1| - 0.067 12.1 9.2 0.27 10.2 2.2 3.3 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 Mce4_CUP1 PF11887.8 gi|313125449|ref|YP_004035713.1| - 0.14 11.6 18.2 0.046 13.2 3.2 3.3 2 1 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Atg14 PF10186.9 gi|313125449|ref|YP_004035713.1| - 0.23 10.5 3.1 0.13 11.3 0.5 1.9 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 BLOC1_2 PF10046.9 gi|313125449|ref|YP_004035713.1| - 0.34 11.2 21.4 7.2 7.0 1.3 5.7 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|313125449|ref|YP_004035713.1| - 0.36 10.8 35.7 0.032 14.2 5.3 5.3 2 2 2 5 5 5 0 Laminin Domain II DUF948 PF06103.11 gi|313125449|ref|YP_004035713.1| - 0.39 11.0 42.5 0.097 12.9 6.2 7.2 3 2 5 8 8 8 0 Bacterial protein of unknown function (DUF948) TPPK_C PF12555.8 gi|313125449|ref|YP_004035713.1| - 0.4 10.8 3.6 1.3 9.1 0.4 2.7 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal AIP3 PF03915.13 gi|313125449|ref|YP_004035713.1| - 0.63 9.1 18.4 1.4 7.9 6.6 2.5 2 0 0 2 2 2 0 Actin interacting protein 3 Prominin PF05478.11 gi|313125449|ref|YP_004035713.1| - 2.2 6.1 11.4 5 4.9 5.1 2.2 1 1 1 2 2 2 0 Prominin TMPIT PF07851.13 gi|313125449|ref|YP_004035713.1| - 2.4 7.3 8.9 5.6 6.1 1.5 3.2 2 2 0 3 3 3 0 TMPIT-like protein Nup54 PF13874.6 gi|313125449|ref|YP_004035713.1| - 3.4 7.8 13.7 4.1 7.5 4.4 3.5 3 1 0 3 3 3 0 Nucleoporin complex subunit 54 DUF2203 PF09969.9 gi|313125449|ref|YP_004035713.1| - 4.8 7.9 23.0 1.4 9.7 1.2 4.7 3 2 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) DUF1664 PF07889.12 gi|313125449|ref|YP_004035713.1| - 5.5 7.0 26.4 0.84 9.7 4.8 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) BORCS8 PF10167.9 gi|313125449|ref|YP_004035713.1| - 9.3 6.2 11.2 17 5.4 0.3 4.4 4 1 1 5 5 5 0 BLOC-1-related complex sub-unit 8 Putative_PNPOx PF01243.20 gi|313125450|ref|YP_004035714.1| - 2.2e-15 56.6 0.0 4e-14 52.6 0.0 2.1 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|313125450|ref|YP_004035714.1| - 3.7e-10 39.9 0.1 4.8e-10 39.6 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase F420H2_quin_red PF04075.14 gi|313125450|ref|YP_004035714.1| - 0.014 15.5 0.1 0.025 14.7 0.1 1.6 1 1 0 1 1 1 0 F420H(2)-dependent quinone reductase Pyrid_ox_like PF16242.5 gi|313125450|ref|YP_004035714.1| - 0.017 14.7 0.0 0.024 14.2 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like FAA_hydrolase PF01557.18 gi|313125453|ref|YP_004035717.1| - 1.6e-44 152.2 0.0 1.9e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF393 PF04134.12 gi|313125454|ref|YP_004035718.1| - 3.9e-12 47.5 0.1 4.7e-12 47.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DUF4225 PF13988.6 gi|313125455|ref|YP_004035719.1| - 0.56 9.7 2.3 0.62 9.6 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) Phage_holin_3_6 PF07332.11 gi|313125455|ref|YP_004035719.1| - 2.1 8.4 7.8 2.5 8.2 7.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Tetraspanin PF00335.20 gi|313125455|ref|YP_004035719.1| - 2.7 7.6 5.6 3.5 7.3 5.6 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF3040 PF11239.8 gi|313125456|ref|YP_004035720.1| - 1.8 8.9 5.4 0.26 11.6 2.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SPW PF03779.14 gi|313125457|ref|YP_004035721.1| - 3.1e-14 52.3 18.4 5.3e-08 32.3 6.0 2.3 2 0 0 2 2 2 2 SPW repeat ThrE PF06738.12 gi|313125457|ref|YP_004035721.1| - 0.56 9.5 9.6 0.68 9.2 9.6 1.1 1 0 0 1 1 1 0 Putative threonine/serine exporter DPM3 PF08285.11 gi|313125457|ref|YP_004035721.1| - 1.1 9.5 4.1 0.46 10.7 0.3 1.9 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Ion_trans PF00520.31 gi|313125458|ref|YP_004035722.1| - 1e-17 64.2 13.8 1.3e-17 63.8 13.8 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|313125458|ref|YP_004035722.1| - 4.8e-16 58.5 5.0 4.8e-16 58.5 5.0 2.1 3 0 0 3 3 3 1 Ion channel zf-ribbon_3 PF13248.6 gi|313125458|ref|YP_004035722.1| - 5.7e-05 22.4 3.8 8.5e-05 21.8 3.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|313125458|ref|YP_004035722.1| - 0.0045 17.0 0.2 0.0069 16.4 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|313125458|ref|YP_004035722.1| - 0.024 14.3 2.5 0.046 13.4 2.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF962 PF06127.11 gi|313125458|ref|YP_004035722.1| - 0.077 13.1 0.6 0.37 10.9 0.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF962) zinc_ribbon_4 PF13717.6 gi|313125458|ref|YP_004035722.1| - 0.42 10.6 2.1 6 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|313125458|ref|YP_004035722.1| - 0.56 9.8 2.4 3.8 7.1 2.4 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|313125458|ref|YP_004035722.1| - 0.74 9.8 4.3 1.7 8.7 4.3 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|313125458|ref|YP_004035722.1| - 1 9.4 3.2 3.4 7.7 0.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|313125458|ref|YP_004035722.1| - 1.7 8.6 4.1 11 6.0 4.9 2.0 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PKD_channel PF08016.12 gi|313125458|ref|YP_004035722.1| - 1.7 7.2 10.4 3.4 6.2 10.4 1.5 1 1 0 1 1 1 0 Polycystin cation channel zf-NADH-PPase PF09297.11 gi|313125458|ref|YP_004035722.1| - 2 8.1 4.8 8.6 6.1 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ACC PF17848.1 gi|313125458|ref|YP_004035722.1| - 2.1 8.5 5.4 1.5 9.0 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain End3 PF12761.7 gi|313125459|ref|YP_004035723.1| - 0.001 19.3 1.5 0.0016 18.7 1.5 1.3 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 Uso1_p115_C PF04871.13 gi|313125459|ref|YP_004035723.1| - 0.0077 16.6 0.5 0.014 15.8 0.5 1.5 1 1 0 1 1 1 1 Uso1 / p115 like vesicle tethering protein, C terminal region Pox_A_type_inc PF04508.12 gi|313125459|ref|YP_004035723.1| - 0.03 14.2 0.4 0.063 13.2 0.4 1.6 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat DUF4094 PF13334.6 gi|313125459|ref|YP_004035723.1| - 0.045 14.2 1.6 0.048 14.1 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) Csm1_N PF18504.1 gi|313125459|ref|YP_004035723.1| - 0.052 13.9 3.3 0.055 13.8 1.8 1.7 2 0 0 2 2 2 0 Csm1 N-terminal domain Bys1 PF04681.12 gi|313125459|ref|YP_004035723.1| - 0.13 12.2 0.2 0.23 11.4 0.1 1.4 1 1 0 1 1 1 0 Blastomyces yeast-phase-specific protein CTP_transf_like PF01467.26 gi|313125459|ref|YP_004035723.1| - 0.28 11.4 1.8 0.43 10.8 1.8 1.4 1 1 0 1 1 1 0 Cytidylyltransferase-like DoxX PF07681.12 gi|313125460|ref|YP_004035724.1| - 9.9e-08 32.5 8.9 9.9e-08 32.5 8.9 1.8 2 0 0 2 2 2 1 DoxX CMD PF02627.20 gi|313125461|ref|YP_004035725.1| - 1.4e-07 31.4 1.7 1.9e-07 31.1 1.7 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Phage-MuB_C PF09077.11 gi|313125461|ref|YP_004035725.1| - 0.0091 15.9 0.8 0.17 11.8 0.1 2.3 1 1 1 2 2 2 1 Mu B transposition protein, C terminal DUF908 PF06012.12 gi|313125461|ref|YP_004035725.1| - 0.0097 15.4 0.0 0.012 15.1 0.0 1.1 1 0 0 1 1 1 1 Domain of Unknown Function (DUF908) HxlR PF01638.17 gi|313125462|ref|YP_004035726.1| - 2.1e-22 78.8 0.0 2.7e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|313125462|ref|YP_004035726.1| - 0.0025 17.7 0.0 0.0037 17.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|313125462|ref|YP_004035726.1| - 0.0069 16.5 0.0 0.0095 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|313125462|ref|YP_004035726.1| - 0.011 15.7 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.6 gi|313125462|ref|YP_004035726.1| - 0.033 14.3 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Trp_repressor PF01371.19 gi|313125462|ref|YP_004035726.1| - 0.043 13.9 0.0 0.067 13.3 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein HTH_5 PF01022.20 gi|313125462|ref|YP_004035726.1| - 0.047 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|313125462|ref|YP_004035726.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GST_N_2 PF13409.6 gi|313125463|ref|YP_004035727.1| - 3.2e-17 62.6 0.0 3.7e-16 59.2 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|313125463|ref|YP_004035727.1| - 1e-12 47.9 0.1 2.5e-12 46.6 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|313125463|ref|YP_004035727.1| - 4.6e-08 33.2 0.0 7e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|313125463|ref|YP_004035727.1| - 1.6e-06 28.2 0.0 2.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|313125463|ref|YP_004035727.1| - 0.0065 16.9 0.1 3.9 8.0 0.0 2.9 3 0 0 3 3 3 2 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|313125463|ref|YP_004035727.1| - 0.014 15.2 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Glyoxalase PF00903.25 gi|313125464|ref|YP_004035728.1| - 3.5e-08 33.7 0.7 4.7e-08 33.3 0.7 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313125464|ref|YP_004035728.1| - 0.0021 18.3 0.0 0.003 17.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Cohesin PF00963.18 gi|313125465|ref|YP_004035729.1| - 0.034 14.4 0.3 0.062 13.5 0.2 1.6 2 0 0 2 2 2 0 Cohesin domain FixG_C PF11614.8 gi|313125465|ref|YP_004035729.1| - 0.074 13.3 0.1 0.08 13.2 0.1 1.2 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase fn3_6 PF17766.1 gi|313125465|ref|YP_004035729.1| - 0.11 12.7 0.3 0.31 11.2 0.3 1.8 1 1 0 1 1 1 0 Fibronectin type-III domain Reprolysin_5 PF13688.6 gi|313125466|ref|YP_004035730.1| - 0.0013 19.0 3.3 0.0018 18.5 3.3 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 gi|313125466|ref|YP_004035730.1| - 0.0038 17.7 0.3 0.0068 16.9 0.3 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|313125466|ref|YP_004035730.1| - 0.093 12.6 1.8 0.088 12.7 0.5 1.6 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like DDE_Tnp_IS240 PF13610.6 gi|313125467|ref|YP_004035731.1| - 4e-27 95.1 0.0 6.3e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 DDE domain DDE_3 PF13358.6 gi|313125467|ref|YP_004035731.1| - 0.015 15.0 0.3 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease rve PF00665.26 gi|313125467|ref|YP_004035731.1| - 0.027 14.6 0.0 0.062 13.5 0.0 1.6 2 0 0 2 2 2 0 Integrase core domain DUF1115 PF06544.12 gi|313125467|ref|YP_004035731.1| - 0.033 14.3 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) PilJ PF13675.6 gi|313125467|ref|YP_004035731.1| - 0.19 11.8 0.0 0.43 10.6 0.0 1.5 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term YbgT_YccB PF08173.11 gi|313125469|ref|YP_004035733.1| - 0.48 10.6 3.5 0.87 9.8 3.5 1.4 1 0 0 1 1 1 0 Membrane bound YbgT-like protein HTH_27 PF13463.6 gi|313125472|ref|YP_004035736.1| - 0.0084 16.6 0.1 0.024 15.1 0.1 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain MscS_porin PF12795.7 gi|313125472|ref|YP_004035736.1| - 0.017 14.7 3.4 0.017 14.7 3.4 1.4 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain DUF2250 PF10007.9 gi|313125472|ref|YP_004035736.1| - 0.038 14.1 0.9 0.079 13.1 0.3 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) YabA PF06156.13 gi|313125472|ref|YP_004035736.1| - 0.07 13.8 6.5 1.8 9.2 1.1 2.2 2 0 0 2 2 2 0 Initiation control protein YabA MarR PF01047.22 gi|313125472|ref|YP_004035736.1| - 0.09 12.7 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 MarR family Snapin_Pallidin PF14712.6 gi|313125472|ref|YP_004035736.1| - 2.6 8.5 7.9 0.98 9.9 0.5 2.6 2 1 0 2 2 2 0 Snapin/Pallidin Spc7 PF08317.11 gi|313125474|ref|YP_004035738.1| - 2.5e-07 29.9 43.7 4.7e-06 25.7 15.4 2.3 2 0 0 2 2 2 2 Spc7 kinetochore protein DUF1664 PF07889.12 gi|313125474|ref|YP_004035738.1| - 1.8e-06 28.0 33.3 0.0061 16.6 4.7 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|313125474|ref|YP_004035738.1| - 3.2e-05 22.8 12.3 3.2e-05 22.8 12.3 2.3 1 1 0 2 2 2 1 AAA domain Atg14 PF10186.9 gi|313125474|ref|YP_004035738.1| - 0.00011 21.4 11.3 0.00011 21.4 11.3 2.6 2 0 0 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 Laminin_II PF06009.12 gi|313125474|ref|YP_004035738.1| - 0.00017 21.7 4.4 0.00017 21.7 4.4 3.9 2 2 0 3 3 3 1 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|313125474|ref|YP_004035738.1| - 0.00021 21.5 7.4 0.00021 21.5 7.4 4.6 2 2 2 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Baculo_PEP_C PF04513.12 gi|313125474|ref|YP_004035738.1| - 0.00094 19.2 0.6 0.00094 19.2 0.6 3.7 2 2 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.8 gi|313125474|ref|YP_004035738.1| - 0.0015 18.5 10.6 0.0015 18.5 10.6 4.9 2 2 2 4 4 3 1 TATA element modulatory factor 1 DNA binding SbcCD_C PF13558.6 gi|313125474|ref|YP_004035738.1| - 0.0022 18.2 0.0 0.0061 16.8 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DpnI PF06044.12 gi|313125474|ref|YP_004035738.1| - 0.0032 17.1 0.5 0.0032 17.1 0.5 1.7 2 0 0 2 2 1 1 Dam-replacing family ATG16 PF08614.11 gi|313125474|ref|YP_004035738.1| - 0.005 17.1 12.6 0.005 17.1 12.6 3.4 1 1 2 3 3 3 1 Autophagy protein 16 (ATG16) DUF4164 PF13747.6 gi|313125474|ref|YP_004035738.1| - 0.013 15.8 5.8 0.013 15.8 5.8 4.7 2 2 2 4 4 4 0 Domain of unknown function (DUF4164) DUF4201 PF13870.6 gi|313125474|ref|YP_004035738.1| - 0.016 14.9 3.1 0.016 14.9 3.1 4.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4201) Rad50_zn_hook PF04423.14 gi|313125474|ref|YP_004035738.1| - 0.024 14.5 0.0 0.024 14.5 0.0 6.3 5 3 4 9 9 4 0 Rad50 zinc hook motif zf-Di19 PF05605.12 gi|313125474|ref|YP_004035738.1| - 0.036 14.3 1.9 2.4 8.5 0.0 2.9 3 0 0 3 3 2 0 Drought induced 19 protein (Di19), zinc-binding FapA PF03961.13 gi|313125474|ref|YP_004035738.1| - 0.066 11.8 32.6 0.049 12.2 12.4 3.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A eIF-5_eIF-2B PF01873.17 gi|313125474|ref|YP_004035738.1| - 0.068 13.1 0.5 0.17 11.8 0.5 1.7 1 0 0 1 1 1 0 Domain found in IF2B/IF5 DUF885 PF05960.11 gi|313125474|ref|YP_004035738.1| - 0.073 12.7 10.5 0.11 12.1 10.5 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) SHE3 PF17078.5 gi|313125474|ref|YP_004035738.1| - 0.075 12.7 38.8 0.045 13.5 17.6 2.4 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 NPV_P10 PF05531.12 gi|313125474|ref|YP_004035738.1| - 0.14 12.6 16.6 4.5 7.8 7.3 4.3 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein AAA_27 PF13514.6 gi|313125474|ref|YP_004035738.1| - 0.18 11.4 0.1 0.18 11.4 0.1 4.3 3 2 1 4 4 4 0 AAA domain Mce4_CUP1 PF11887.8 gi|313125474|ref|YP_004035738.1| - 0.54 9.7 2.2 19 4.6 0.1 3.1 3 0 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative CK2S PF15011.6 gi|313125474|ref|YP_004035738.1| - 0.55 10.1 24.8 0.042 13.7 2.3 4.0 2 2 1 3 3 3 0 Casein Kinase 2 substrate Lebercilin PF15619.6 gi|313125474|ref|YP_004035738.1| - 0.69 9.5 48.7 2.7 7.6 23.9 2.7 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF4795 PF16043.5 gi|313125474|ref|YP_004035738.1| - 0.87 9.2 45.5 4.9 6.7 6.2 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) Mod_r PF07200.13 gi|313125474|ref|YP_004035738.1| - 1.1 9.3 46.8 11 6.1 5.3 4.3 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Sgf11 PF08209.11 gi|313125474|ref|YP_004035738.1| - 1.2 8.7 3.1 5 6.8 0.1 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Fez1 PF06818.15 gi|313125474|ref|YP_004035738.1| - 1.5 9.3 48.2 0.044 14.2 16.9 3.3 1 1 2 3 3 3 0 Fez1 DUF948 PF06103.11 gi|313125474|ref|YP_004035738.1| - 1.5 9.1 14.9 9.1 6.6 0.6 4.0 3 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 gi|313125474|ref|YP_004035738.1| - 1.5 9.5 29.9 0.081 13.7 2.6 4.4 2 2 1 3 3 2 0 Uncharacterized conserved protein (DUF2203) Sec34 PF04136.15 gi|313125474|ref|YP_004035738.1| - 2.1 8.2 31.2 0.43 10.5 3.0 4.0 2 2 2 4 4 4 0 Sec34-like family APG6_N PF17675.1 gi|313125474|ref|YP_004035738.1| - 2.2 8.8 65.3 0.15 12.6 23.1 4.3 2 1 3 5 5 4 0 Apg6 coiled-coil region Exonuc_VII_L PF02601.15 gi|313125474|ref|YP_004035738.1| - 2.3 7.7 35.2 1.8e+04 -11.3 35.2 2.8 1 1 0 1 1 0 0 Exonuclease VII, large subunit FPP PF05911.11 gi|313125474|ref|YP_004035738.1| - 2.6 6.1 40.3 1.7 6.7 13.9 2.1 2 0 0 2 2 2 0 Filament-like plant protein, long coiled-coil DUF5082 PF16888.5 gi|313125474|ref|YP_004035738.1| - 2.7 8.3 44.0 0.15 12.4 4.0 5.4 2 2 1 4 4 3 0 Domain of unknown function (DUF5082) AAA_23 PF13476.6 gi|313125474|ref|YP_004035738.1| - 2.8 8.4 55.9 1.8e+04 -17.1 55.9 3.4 1 1 0 1 1 0 0 AAA domain Golgin_A5 PF09787.9 gi|313125474|ref|YP_004035738.1| - 3.8 6.9 44.4 2 7.8 20.7 2.5 2 0 0 2 2 2 0 Golgin subfamily A member 5 MCPsignal PF00015.21 gi|313125474|ref|YP_004035738.1| - 4.8 7.0 12.8 3.7 7.3 2.8 3.2 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain GIT1_C PF12205.8 gi|313125474|ref|YP_004035738.1| - 5.3 7.2 12.5 1 9.5 1.2 2.9 2 2 0 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term CpXC PF14353.6 gi|313125474|ref|YP_004035738.1| - 5.7 7.0 8.8 20 5.3 3.0 3.3 2 1 0 2 2 2 0 CpXC protein DUF4686 PF15742.5 gi|313125474|ref|YP_004035738.1| - 6.2 5.8 50.4 2.7 7.0 19.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4686) DUF4988 PF16378.5 gi|313125474|ref|YP_004035738.1| - 6.5 6.4 7.3 19 4.9 0.1 3.5 4 0 0 4 4 3 0 Domain of unknown function Fib_alpha PF08702.10 gi|313125474|ref|YP_004035738.1| - 7.7 6.7 35.7 8 6.6 6.7 4.3 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family EzrA PF06160.12 gi|313125476|ref|YP_004035740.1| - 7.4e-06 24.4 1.6 1.2e-05 23.7 1.6 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA AAA_16 PF13191.6 gi|313125476|ref|YP_004035740.1| - 0.012 16.0 0.8 0.17 12.3 0.0 2.8 1 1 1 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|313125476|ref|YP_004035740.1| - 0.013 15.5 0.0 0.083 12.8 0.0 2.4 3 0 0 3 3 3 0 NACHT domain NB-ARC PF00931.22 gi|313125476|ref|YP_004035740.1| - 0.02 14.1 0.0 0.061 12.5 0.0 1.8 1 0 0 1 1 1 0 NB-ARC domain Prominin PF05478.11 gi|313125476|ref|YP_004035740.1| - 0.026 12.5 0.7 0.04 11.9 0.7 1.1 1 0 0 1 1 1 0 Prominin IstB_IS21 PF01695.17 gi|313125476|ref|YP_004035740.1| - 0.043 13.6 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein TEX13 PF15186.6 gi|313125476|ref|YP_004035740.1| - 0.057 13.1 1.9 0.11 12.2 1.9 1.4 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family AAA_22 PF13401.6 gi|313125476|ref|YP_004035740.1| - 0.097 12.9 0.0 0.3 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|313125476|ref|YP_004035740.1| - 0.17 11.7 0.2 0.52 10.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein Ead_Ea22 PF13935.6 gi|313125476|ref|YP_004035740.1| - 0.62 10.7 4.9 11 6.7 2.4 2.6 1 1 0 2 2 2 0 Ead/Ea22-like protein Spectrin PF00435.21 gi|313125476|ref|YP_004035740.1| - 0.94 10.0 5.4 3.1 8.3 4.9 2.3 1 1 0 1 1 1 0 Spectrin repeat CC2-LZ PF16516.5 gi|313125476|ref|YP_004035740.1| - 1 9.8 5.6 0.76 10.2 2.7 2.2 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Phage_integrase PF00589.22 gi|313125477|ref|YP_004035741.1| - 1.6e-25 89.9 0.2 2.8e-25 89.1 0.2 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|313125477|ref|YP_004035741.1| - 2.8e-12 46.9 1.6 5.5e-12 46.0 1.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|313125477|ref|YP_004035741.1| - 3.7e-09 36.8 1.7 4.6e-09 36.5 0.4 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|313125477|ref|YP_004035741.1| - 0.00028 20.8 0.3 0.023 14.6 0.1 2.3 1 1 0 2 2 2 1 Archaeal phage integrase Phage_int_SAM_5 PF13102.6 gi|313125477|ref|YP_004035741.1| - 0.00033 20.9 0.3 0.0012 19.1 0.2 1.9 2 0 0 2 2 2 1 Phage integrase SAM-like domain Sdh5 PF03937.16 gi|313125477|ref|YP_004035741.1| - 0.02 14.8 0.1 0.11 12.5 0.0 2.2 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Phage_int_SAM_2 PF12834.7 gi|313125477|ref|YP_004035741.1| - 0.06 14.0 0.1 0.24 12.1 0.1 2.0 1 1 0 1 1 1 0 Phage integrase, N-terminal RB_A PF01858.17 gi|313125478|ref|YP_004035742.1| - 0.019 14.8 2.6 0.025 14.4 2.6 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein A domain Anticodon_1 PF08264.13 gi|313125478|ref|YP_004035742.1| - 0.026 14.5 0.4 0.1 12.6 0.1 1.8 1 1 1 2 2 2 0 Anticodon-binding domain of tRNA Exonuc_VII_L PF02601.15 gi|313125478|ref|YP_004035742.1| - 0.042 13.4 3.9 0.048 13.2 3.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Peptidase_C11 PF03415.14 gi|313125478|ref|YP_004035742.1| - 0.047 13.1 0.3 0.057 12.8 0.3 1.1 1 0 0 1 1 1 0 Clostripain family CDC37_N PF03234.14 gi|313125478|ref|YP_004035742.1| - 0.054 14.4 3.7 0.082 13.8 3.7 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding aGPT-Pplase3 PF18746.1 gi|313125478|ref|YP_004035742.1| - 0.058 12.7 0.0 0.07 12.5 0.0 1.1 1 0 0 1 1 1 0 Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 3 eIF3_N PF09440.10 gi|313125478|ref|YP_004035742.1| - 0.071 13.5 2.9 0.09 13.2 2.9 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain HXXSHH PF07586.11 gi|313125478|ref|YP_004035742.1| - 0.082 12.5 2.4 0.089 12.4 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) HlyD_2 PF12700.7 gi|313125478|ref|YP_004035742.1| - 0.11 11.2 1.7 0.13 10.9 1.7 1.1 1 0 0 1 1 1 0 HlyD family secretion protein KCNQ2_u3 PF16642.5 gi|313125478|ref|YP_004035742.1| - 0.16 13.0 0.0 0.82 10.7 0.0 2.0 2 0 0 2 2 2 0 Unstructured region on Potassium channel subunit alpha KvLQT2 Imm49 PF15575.6 gi|313125478|ref|YP_004035742.1| - 0.19 11.5 2.2 0.31 10.8 1.5 1.6 1 1 1 2 2 2 0 Immunity protein 49 IF2_N PF04760.15 gi|313125478|ref|YP_004035742.1| - 0.23 11.3 2.2 0.36 10.7 0.7 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region ParE_toxin PF05016.15 gi|313125478|ref|YP_004035742.1| - 0.39 11.4 3.0 1.8 9.2 3.0 2.0 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE Pox_A_type_inc PF04508.12 gi|313125478|ref|YP_004035742.1| - 0.63 10.0 6.4 0.11 12.4 2.2 2.0 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Csm1_N PF18504.1 gi|313125478|ref|YP_004035742.1| - 0.79 10.1 9.8 1 9.8 6.6 2.2 1 1 1 2 2 2 0 Csm1 N-terminal domain PspB PF06667.12 gi|313125478|ref|YP_004035742.1| - 3 7.9 5.2 2.5 8.2 2.1 2.5 2 1 1 3 3 3 0 Phage shock protein B GAF_2 PF13185.6 gi|313125479|ref|YP_004035743.1| - 6.1e-20 71.9 0.2 8.8e-19 68.2 0.0 2.6 2 1 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|313125479|ref|YP_004035743.1| - 1.7e-17 64.0 0.0 1.3e-16 61.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313125479|ref|YP_004035743.1| - 4.7e-13 49.0 0.2 4.7e-13 49.0 0.2 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|313125479|ref|YP_004035743.1| - 3e-09 37.6 0.0 1.1e-07 32.6 0.0 2.8 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|313125479|ref|YP_004035743.1| - 2.8e-05 24.5 0.0 5.1e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain HisKA_4TM PF16926.5 gi|313125479|ref|YP_004035743.1| - 0.0012 18.5 1.5 0.029 13.9 0.3 2.8 2 1 1 3 3 3 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|313125479|ref|YP_004035743.1| - 0.049 13.5 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|313125479|ref|YP_004035743.1| - 0.063 13.2 0.0 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain sCache_like PF16736.5 gi|313125479|ref|YP_004035743.1| - 0.18 11.9 0.1 0.47 10.6 0.1 1.7 1 0 0 1 1 1 0 Single Cache-like eIF-5_eIF-2B PF01873.17 gi|313125480|ref|YP_004035744.1| - 2.1e-30 105.0 0.0 3e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|313125480|ref|YP_004035744.1| - 5.4e-06 26.3 0.8 9.1e-06 25.6 0.8 1.3 1 0 0 1 1 1 1 TRAM domain DUF2271 PF10029.9 gi|313125480|ref|YP_004035744.1| - 0.082 12.5 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2271) Lar_restr_allev PF14354.6 gi|313125480|ref|YP_004035744.1| - 0.11 12.8 1.2 1.6 9.1 1.2 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|313125480|ref|YP_004035744.1| - 0.2 11.8 2.5 2.1 8.5 2.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|313125480|ref|YP_004035744.1| - 0.78 9.5 2.9 24 4.7 3.5 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Sigma70_ner PF04546.13 gi|313125481|ref|YP_004035745.1| - 0.21 11.5 2.2 0.35 10.7 2.2 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region DNA_pol_phi PF04931.13 gi|313125481|ref|YP_004035745.1| - 9.9 4.1 6.3 14 3.6 6.3 1.1 1 0 0 1 1 1 0 DNA polymerase phi SHOCT PF09851.9 gi|313125482|ref|YP_004035746.1| - 1.2e-05 24.8 2.4 2.1e-05 24.1 2.4 1.4 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|313125482|ref|YP_004035746.1| - 0.027 14.5 0.5 0.046 13.7 0.5 1.3 1 0 0 1 1 1 0 Gas vesicle protein G DUF2334 PF10096.9 gi|313125483|ref|YP_004035747.1| - 2.3e-31 109.1 0.0 2.8e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.21 gi|313125483|ref|YP_004035747.1| - 4e-05 23.5 0.0 0.00036 20.4 0.0 2.1 2 0 0 2 2 2 1 Polysaccharide deacetylase LIME1 PF15332.6 gi|313125483|ref|YP_004035747.1| - 0.13 11.8 0.4 0.2 11.2 0.4 1.3 1 0 0 1 1 1 0 Lck-interacting transmembrane adapter 1 DS PF01916.17 gi|313125484|ref|YP_004035748.1| - 3.9e-94 315.1 0.0 4.9e-94 314.8 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase NIF3 PF01784.18 gi|313125485|ref|YP_004035749.1| - 1.7e-54 185.0 0.0 2e-54 184.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 gi|313125485|ref|YP_004035749.1| - 0.00097 18.6 0.4 0.011 15.2 0.1 2.5 2 2 0 2 2 2 1 Xylose isomerase-like TIM barrel Usp PF00582.26 gi|313125485|ref|YP_004035749.1| - 0.0082 16.7 0.8 0.63 10.6 0.2 2.3 2 0 0 2 2 2 1 Universal stress protein family Glyoxalase_4 PF13669.6 gi|313125485|ref|YP_004035749.1| - 0.01 16.1 0.4 0.3 11.4 0.2 2.5 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|313125485|ref|YP_004035749.1| - 0.075 13.8 0.3 0.17 12.7 0.3 1.6 1 0 0 1 1 1 0 Glyoxalase-like domain Arginase PF00491.21 gi|313125486|ref|YP_004035750.1| - 1.2e-54 185.7 0.2 1.5e-54 185.4 0.2 1.0 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|313125487|ref|YP_004035751.1| - 0.0063 16.5 0.0 0.014 15.4 0.0 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|313125487|ref|YP_004035751.1| - 0.039 14.1 0.2 0.07 13.2 0.2 1.5 1 0 0 1 1 1 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Gemini_C4 PF01492.17 gi|313125487|ref|YP_004035751.1| - 0.15 12.0 0.3 11 6.0 0.0 2.8 1 1 2 3 3 3 0 Geminivirus C4 protein PEP-utilisers_N PF05524.13 gi|313125488|ref|YP_004035752.1| - 0.096 12.9 0.7 0.18 12.0 0.2 1.7 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal DUF5518 PF17647.1 gi|313125489|ref|YP_004035753.1| - 3.1e-06 27.3 10.9 4.1e-06 26.9 10.9 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) ABC1 PF03109.16 gi|313125490|ref|YP_004035754.1| - 4.1e-28 97.9 0.0 2.3e-27 95.5 0.0 2.1 2 0 0 2 2 2 1 ABC1 family APH PF01636.23 gi|313125490|ref|YP_004035754.1| - 0.00059 19.8 0.2 0.029 14.3 0.2 2.5 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|313125490|ref|YP_004035754.1| - 0.00084 18.8 0.0 0.0019 17.6 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain LtrA PF06772.11 gi|313125490|ref|YP_004035754.1| - 0.12 11.6 0.2 0.18 11.0 0.2 1.2 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) HSP20 PF00011.21 gi|313125491|ref|YP_004035755.1| - 1.1e-12 48.0 0.0 1.2e-12 47.8 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|313125491|ref|YP_004035755.1| - 2.9e-06 26.7 0.1 6.2e-06 25.7 0.1 1.6 1 1 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|313125491|ref|YP_004035755.1| - 0.0091 16.1 0.6 0.026 14.6 0.3 1.7 2 0 0 2 2 2 1 GvpH CNF1 PF05785.12 gi|313125491|ref|YP_004035755.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor MoeA_N PF03453.17 gi|313125492|ref|YP_004035756.1| - 1e-39 135.9 3.5 1.6e-39 135.2 3.5 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|313125492|ref|YP_004035756.1| - 2.6e-26 92.0 0.1 4.1e-26 91.4 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|313125492|ref|YP_004035756.1| - 3.2e-18 65.6 0.4 1.9e-17 63.2 0.1 2.6 2 1 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|313125493|ref|YP_004035757.1| - 4.9e-39 133.6 6.0 1.1e-38 132.4 6.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|313125493|ref|YP_004035757.1| - 9.9e-25 86.9 0.0 1.8e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|313125493|ref|YP_004035757.1| - 5.9e-24 84.2 0.0 5.2e-23 81.2 0.0 2.3 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|313125493|ref|YP_004035757.1| - 6.1e-14 52.0 0.8 1.6e-13 50.6 0.1 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|313125493|ref|YP_004035757.1| - 0.0014 18.5 0.1 0.0029 17.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Shikimate_DH PF01488.20 gi|313125493|ref|YP_004035757.1| - 0.098 12.7 0.1 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HalOD1 PF18545.1 gi|313125494|ref|YP_004035758.1| - 2.3e-16 59.8 0.8 7.3e-16 58.2 0.0 2.2 2 1 1 3 3 3 1 Halobacterial output domain 1 Response_reg PF00072.24 gi|313125494|ref|YP_004035758.1| - 9.3e-10 38.7 0.0 1.9e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HAD_2 PF13419.6 gi|313125495|ref|YP_004035759.1| - 9.1e-16 58.4 0.0 1.6e-15 57.7 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313125495|ref|YP_004035759.1| - 4.5e-07 30.4 2.2 7.4e-07 29.7 2.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125495|ref|YP_004035759.1| - 8.9e-07 29.4 0.0 5.7e-05 23.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125495|ref|YP_004035759.1| - 0.048 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like NIF PF03031.18 gi|313125495|ref|YP_004035759.1| - 0.16 11.7 0.0 3.7 7.3 0.0 2.0 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase Pterin_4a PF01329.19 gi|313125498|ref|YP_004035762.1| - 3e-26 91.4 0.0 3.5e-26 91.2 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Peptidase_S9 PF00326.21 gi|313125498|ref|YP_004035762.1| - 0.18 11.3 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 Prolyl oligopeptidase family Par3_HAL_N_term PF12053.8 gi|313125498|ref|YP_004035762.1| - 0.31 11.3 0.0 0.31 11.3 0.0 1.8 2 0 0 2 2 2 0 N-terminal of Par3 and HAL proteins Shikimate_DH PF01488.20 gi|313125499|ref|YP_004035763.1| - 1.4e-33 115.9 0.1 2.7e-33 115.0 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|313125499|ref|YP_004035763.1| - 1.7e-33 115.4 0.2 3.6e-33 114.4 0.2 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|313125499|ref|YP_004035763.1| - 1.8e-19 70.0 1.3 3.9e-19 68.9 1.3 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|313125499|ref|YP_004035763.1| - 1e-07 31.6 0.4 1e-07 31.6 0.4 2.3 3 0 0 3 3 3 1 Glucose dehydrogenase C-terminus F420_oxidored PF03807.17 gi|313125499|ref|YP_004035763.1| - 9.2e-06 26.2 0.3 2.9e-05 24.6 0.3 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|313125499|ref|YP_004035763.1| - 0.00038 20.7 2.2 0.00092 19.5 0.1 2.6 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|313125499|ref|YP_004035763.1| - 0.00046 20.6 0.1 0.0017 18.8 0.1 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|313125499|ref|YP_004035763.1| - 0.00084 19.5 0.0 0.0022 18.2 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.21 gi|313125499|ref|YP_004035763.1| - 0.0032 16.9 1.3 0.0081 15.5 0.7 1.9 2 0 0 2 2 2 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|313125499|ref|YP_004035763.1| - 0.0038 16.6 0.0 0.0071 15.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UPF0052 PF01933.18 gi|313125499|ref|YP_004035763.1| - 0.028 13.7 0.3 0.05 12.8 0.3 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 TrkA_N PF02254.18 gi|313125499|ref|YP_004035763.1| - 0.051 13.8 0.7 0.31 11.3 0.7 2.4 1 1 0 1 1 1 0 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|313125499|ref|YP_004035763.1| - 0.086 12.1 0.3 1.1 8.5 0.3 2.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KR PF08659.10 gi|313125499|ref|YP_004035763.1| - 0.093 12.6 1.7 0.65 9.9 0.1 2.5 3 0 0 3 3 3 0 KR domain AdoHcyase_NAD PF00670.21 gi|313125499|ref|YP_004035763.1| - 0.1 12.7 0.3 0.32 11.0 0.3 1.7 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|313125499|ref|YP_004035763.1| - 0.14 11.8 0.2 0.31 10.7 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA zf-C4H2 PF10146.9 gi|313125499|ref|YP_004035763.1| - 0.19 12.0 0.0 0.32 11.3 0.0 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein 3HCDH_N PF02737.18 gi|313125499|ref|YP_004035763.1| - 1.1 9.1 4.8 0.85 9.5 0.2 2.7 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|313125500|ref|YP_004035764.1| - 6.4e-21 74.8 0.0 1.3e-20 73.7 0.0 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|313125500|ref|YP_004035764.1| - 2.6e-10 39.6 0.1 2e-09 36.7 0.0 2.3 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|313125500|ref|YP_004035764.1| - 0.0078 15.9 1.6 0.0078 15.9 1.6 2.9 4 0 0 4 4 4 1 Sirohaem synthase dimerisation region PcrB PF01884.17 gi|313125500|ref|YP_004035764.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 PcrB family AsnC_trans_reg2 PF17805.1 gi|313125501|ref|YP_004035765.1| - 4.2e-49 164.6 0.6 8.3e-24 83.6 0.1 2.8 2 1 0 2 2 2 2 AsnC-like ligand binding domain GvpL_GvpF PF06386.11 gi|313125501|ref|YP_004035765.1| - 0.024 14.6 0.5 0.035 14.0 0.5 1.4 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF HTH_29 PF13551.6 gi|313125501|ref|YP_004035765.1| - 0.03 14.3 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix BaxI_1 PF12811.7 gi|313125502|ref|YP_004035766.1| - 0.017 14.7 4.1 0.02 14.4 4.1 1.1 1 0 0 1 1 1 0 Bax inhibitor 1 like Prenyltransf PF01255.19 gi|313125504|ref|YP_004035768.1| - 9.7e-66 221.5 0.0 1.2e-65 221.1 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Cas_Cas1 PF01867.16 gi|313125504|ref|YP_004035768.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas1 Prenyltransf PF01255.19 gi|313125505|ref|YP_004035769.1| - 2.9e-24 85.9 0.0 2e-23 83.1 0.0 1.9 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|313125506|ref|YP_004035770.1| - 4.9e-46 157.1 20.1 4.9e-46 157.1 20.1 3.1 3 2 0 3 3 3 1 Integral membrane protein DUF92 Acetyltransf_10 PF13673.7 gi|313125507|ref|YP_004035771.1| - 4.1e-13 49.4 0.0 4.7e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313125507|ref|YP_004035771.1| - 5.1e-11 42.8 0.0 6.1e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313125507|ref|YP_004035771.1| - 7.4e-11 42.3 0.0 1.5e-10 41.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313125507|ref|YP_004035771.1| - 4.6e-08 32.9 0.0 1.2e-07 31.5 0.0 1.7 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|313125507|ref|YP_004035771.1| - 7.7e-05 22.8 0.0 0.00028 21.0 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313125507|ref|YP_004035771.1| - 0.028 15.1 0.0 0.037 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|313125507|ref|YP_004035771.1| - 0.029 14.2 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|313125507|ref|YP_004035771.1| - 0.042 13.5 0.1 0.057 13.1 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|313125507|ref|YP_004035771.1| - 0.075 13.0 0.0 0.72 9.9 0.0 2.2 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|313125507|ref|YP_004035771.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|313125507|ref|YP_004035771.1| - 0.17 11.6 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Toprim_4 PF13662.6 gi|313125508|ref|YP_004035772.1| - 4.5e-13 49.5 0.1 1.4e-12 47.9 0.1 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|313125508|ref|YP_004035772.1| - 5.9e-06 26.6 0.0 1.7e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|313125508|ref|YP_004035772.1| - 0.013 15.7 0.7 0.12 12.6 0.1 2.9 2 1 0 2 2 2 0 Toprim domain DUF3311 PF11755.8 gi|313125509|ref|YP_004035773.1| - 7.2e-11 41.9 18.9 8.6e-11 41.6 18.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) SSF PF00474.17 gi|313125510|ref|YP_004035774.1| - 3.2e-50 171.2 27.2 4.1e-50 170.8 27.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Herpes_UL4 PF03277.13 gi|313125510|ref|YP_004035774.1| - 0.043 13.4 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus UL4 family YqcI_YcgG PF08892.11 gi|313125511|ref|YP_004035775.1| - 3.3e-79 265.6 0.0 3.9e-79 265.4 0.0 1.1 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|313125512|ref|YP_004035776.1| - 2.9e-33 115.5 0.0 3.4e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family HisKA_7TM PF16927.5 gi|313125513|ref|YP_004035777.1| - 0.035 14.2 10.6 0.04 14.0 10.6 1.0 1 0 0 1 1 1 0 N-terminal 7TM region of histidine kinase SRP_TPR_like PF17004.5 gi|313125515|ref|YP_004035779.1| - 0.11 12.5 0.1 0.4 10.7 0.0 1.9 2 0 0 2 2 2 0 Putative TPR-like repeat LMWSLP_N PF12211.8 gi|313125515|ref|YP_004035779.1| - 0.12 12.0 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 Low molecular weight S layer protein N terminal DUF1405 PF07187.11 gi|313125516|ref|YP_004035780.1| - 3.5e-51 173.3 11.5 5e-51 172.8 11.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) DUF202 PF02656.15 gi|313125516|ref|YP_004035780.1| - 0.24 11.9 5.7 2.7 8.5 0.2 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF202) Ank_2 PF12796.7 gi|313125517|ref|YP_004035781.1| - 1.6e-30 105.5 1.6 6.6e-14 52.3 0.0 2.3 1 1 2 3 3 3 3 Ankyrin repeats (3 copies) Ank_5 PF13857.6 gi|313125517|ref|YP_004035781.1| - 3.1e-20 72.0 1.8 2.4e-08 34.1 0.0 2.9 1 1 2 3 3 3 3 Ankyrin repeats (many copies) Ank_4 PF13637.6 gi|313125517|ref|YP_004035781.1| - 1.8e-17 63.5 0.1 2.5e-07 31.1 0.0 3.3 1 1 2 3 3 3 3 Ankyrin repeats (many copies) Ank PF00023.30 gi|313125517|ref|YP_004035781.1| - 1.5e-16 60.0 0.3 1.6e-05 25.1 0.0 4.2 5 0 0 5 5 5 3 Ankyrin repeat Ank_3 PF13606.6 gi|313125517|ref|YP_004035781.1| - 1.9e-15 55.4 0.2 3e-06 27.1 0.0 4.1 4 0 0 4 4 4 3 Ankyrin repeat PEGA PF08308.11 gi|313125517|ref|YP_004035781.1| - 0.025 14.5 0.0 5.3 7.0 0.0 2.2 2 0 0 2 2 2 0 PEGA domain DUF4157 PF13699.6 gi|313125518|ref|YP_004035782.1| - 3.1e-31 107.4 2.3 7.7e-31 106.2 2.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) GH-E PF14410.6 gi|313125518|ref|YP_004035782.1| - 3.3e-24 85.1 10.3 1.6e-23 82.9 6.2 2.6 1 1 1 2 2 2 1 HNH/ENDO VII superfamily nuclease with conserved GHE residues Peptidase_M91 PF14891.6 gi|313125518|ref|YP_004035782.1| - 0.03 14.7 1.3 0.03 14.7 1.3 1.9 2 0 0 2 2 2 0 Effector protein SOR_SNZ PF01680.17 gi|313125519|ref|YP_004035783.1| - 3.6e-103 343.8 8.2 4.5e-103 343.4 8.2 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|313125519|ref|YP_004035783.1| - 1.5e-10 40.8 5.7 2e-05 24.0 0.6 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|313125519|ref|YP_004035783.1| - 0.0021 17.2 1.5 0.84 8.7 0.1 2.5 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|313125519|ref|YP_004035783.1| - 0.0074 15.5 0.0 0.22 10.7 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|313125519|ref|YP_004035783.1| - 0.016 14.8 0.6 0.049 13.2 0.3 1.8 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MttA_Hcf106 PF02416.16 gi|313125519|ref|YP_004035783.1| - 0.14 11.5 0.1 5.6 6.4 0.0 2.5 2 0 0 2 2 2 0 mttA/Hcf106 family Usp PF00582.26 gi|313125520|ref|YP_004035784.1| - 8.3e-17 62.0 0.4 1e-16 61.7 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Mg_chelatase_C PF13335.6 gi|313125520|ref|YP_004035784.1| - 0.021 15.5 0.1 0.031 14.9 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal GHMP_kinases_N PF00288.26 gi|313125521|ref|YP_004035785.1| - 9e-12 45.1 4.1 9e-12 45.1 4.1 2.3 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|313125521|ref|YP_004035785.1| - 1.9e-07 31.3 0.0 5.1e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal Amino_oxidase PF01593.24 gi|313125522|ref|YP_004035786.1| - 2.3e-38 132.7 0.1 4.1e-38 131.8 0.1 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|313125522|ref|YP_004035786.1| - 1.6e-14 53.9 0.2 4.6e-14 52.4 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|313125522|ref|YP_004035786.1| - 5.5e-09 36.1 0.5 3.6e-06 26.8 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313125522|ref|YP_004035786.1| - 2e-07 30.5 2.1 1.6e-05 24.3 0.1 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313125522|ref|YP_004035786.1| - 1.3e-05 24.4 0.9 1.3e-05 24.4 0.9 1.5 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|313125522|ref|YP_004035786.1| - 0.00021 20.8 0.4 0.00042 19.8 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|313125522|ref|YP_004035786.1| - 0.0006 19.0 0.1 0.0011 18.1 0.1 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|313125522|ref|YP_004035786.1| - 0.0012 17.6 0.4 0.0066 15.2 0.5 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|313125522|ref|YP_004035786.1| - 0.0017 18.9 2.4 0.0047 17.4 0.4 2.5 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|313125522|ref|YP_004035786.1| - 0.0019 18.2 0.7 0.24 11.4 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|313125522|ref|YP_004035786.1| - 0.015 14.1 0.4 0.11 11.4 0.1 2.0 2 0 0 2 2 2 0 Tryptophan halogenase FMO-like PF00743.19 gi|313125522|ref|YP_004035786.1| - 0.027 12.9 0.0 0.038 12.4 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.19 gi|313125522|ref|YP_004035786.1| - 0.047 12.9 0.4 0.17 11.1 0.3 1.8 2 0 0 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|313125522|ref|YP_004035786.1| - 0.066 12.5 0.1 0.066 12.5 0.1 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|313125522|ref|YP_004035786.1| - 0.075 12.3 0.1 0.26 10.5 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|313125522|ref|YP_004035786.1| - 0.1 11.7 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein PepSY_2 PF13670.6 gi|313125522|ref|YP_004035786.1| - 0.11 12.6 0.6 0.38 10.8 0.2 2.0 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain Thi4 PF01946.17 gi|313125522|ref|YP_004035786.1| - 0.14 11.4 3.3 0.14 11.4 0.5 2.3 3 0 0 3 3 3 0 Thi4 family 3HCDH_N PF02737.18 gi|313125522|ref|YP_004035786.1| - 0.15 11.9 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TetR_C_6 PF13977.6 gi|313125523|ref|YP_004035787.1| - 1.4e-09 38.2 4.5 1.4e-09 38.2 4.5 2.7 2 2 1 3 3 3 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|313125523|ref|YP_004035787.1| - 1.9e-08 34.0 0.1 3.4e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|313125523|ref|YP_004035787.1| - 1.8e-07 31.4 0.3 5.5e-06 26.6 0.1 2.5 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|313125523|ref|YP_004035787.1| - 3.2e-07 30.4 1.1 9.8e-07 28.8 0.0 2.4 3 1 1 4 4 4 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|313125523|ref|YP_004035787.1| - 8.6e-06 25.9 4.3 3.3e-05 24.0 0.8 2.5 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|313125523|ref|YP_004035787.1| - 0.011 15.8 0.1 0.038 14.1 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|313125523|ref|YP_004035787.1| - 0.069 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|313125523|ref|YP_004035787.1| - 0.073 13.4 0.4 1.3 9.4 0.0 2.8 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain MatE PF01554.18 gi|313125524|ref|YP_004035788.1| - 4e-60 202.1 38.1 4.1e-37 127.3 10.8 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|313125524|ref|YP_004035788.1| - 3.2e-05 24.0 11.9 3.2e-05 24.0 11.9 4.9 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF3546 PF12066.8 gi|313125526|ref|YP_004035790.1| - 0.18 12.0 2.1 1.3 9.3 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3546) HTH_20 PF12840.7 gi|313125527|ref|YP_004035791.1| - 6.1e-07 29.4 0.0 1.9e-06 27.8 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain ADK_lid PF05191.14 gi|313125527|ref|YP_004035791.1| - 0.0052 16.7 0.4 4.1 7.5 0.0 2.9 2 1 0 2 2 2 2 Adenylate kinase, active site lid SoxZ PF08770.11 gi|313125527|ref|YP_004035791.1| - 0.21 11.4 0.0 0.37 10.6 0.0 1.3 1 0 0 1 1 1 0 Sulphur oxidation protein SoxZ zf_UBZ PF18439.1 gi|313125527|ref|YP_004035791.1| - 0.33 10.6 6.8 31 4.3 0.0 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|313125527|ref|YP_004035791.1| - 0.37 10.9 13.4 3.3 7.9 0.8 4.0 4 0 0 4 4 4 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313125527|ref|YP_004035791.1| - 1.9 8.5 10.5 0.13 12.3 2.3 2.6 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|313125527|ref|YP_004035791.1| - 3.7 8.0 6.2 24 5.4 1.5 3.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar Pyr_redox_2 PF07992.14 gi|313125529|ref|YP_004035793.1| - 6e-45 153.7 0.1 7.8e-45 153.3 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313125529|ref|YP_004035793.1| - 4e-09 36.9 0.2 6.8e-05 23.3 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|313125529|ref|YP_004035793.1| - 7.6e-09 35.4 0.0 2.3e-07 30.7 0.0 2.8 3 0 0 3 3 3 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox_3 PF13738.6 gi|313125529|ref|YP_004035793.1| - 4.9e-07 29.3 0.0 1.5e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313125529|ref|YP_004035793.1| - 0.0041 15.9 0.0 1.9 7.1 0.0 3.2 3 1 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|313125529|ref|YP_004035793.1| - 0.025 14.8 4.1 0.34 11.2 0.0 3.5 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|313125529|ref|YP_004035793.1| - 0.25 10.4 5.3 3 6.8 0.0 3.6 4 1 0 4 4 4 0 FAD binding domain DAO PF01266.24 gi|313125529|ref|YP_004035793.1| - 0.82 9.2 4.2 1.6 8.3 0.0 3.0 4 0 0 4 4 4 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|313125529|ref|YP_004035793.1| - 1.4 8.9 3.5 5.9 6.9 0.0 3.2 4 0 0 4 4 4 0 FAD-NAD(P)-binding RHS_repeat PF05593.14 gi|313125529|ref|YP_004035793.1| - 2.1 8.9 4.3 1.4 9.5 0.6 2.6 3 0 0 3 3 3 0 RHS Repeat Trypsin_2 PF13365.6 gi|313125530|ref|YP_004035794.1| - 2e-27 96.9 2.5 2e-27 96.9 2.5 1.7 2 0 0 2 2 2 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|313125530|ref|YP_004035794.1| - 1e-12 48.2 0.1 2.4e-12 47.0 0.1 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|313125530|ref|YP_004035794.1| - 2e-12 47.4 0.4 6e-12 45.8 0.4 1.7 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|313125530|ref|YP_004035794.1| - 0.00029 20.6 0.2 0.0074 16.1 0.0 2.4 2 0 0 2 2 2 1 PDZ domain Pico_P2A PF00947.19 gi|313125530|ref|YP_004035794.1| - 0.0049 16.9 0.2 0.0089 16.0 0.2 1.3 1 0 0 1 1 1 1 Picornavirus core protein 2A PDZ PF00595.24 gi|313125530|ref|YP_004035794.1| - 0.032 14.6 0.1 0.41 11.0 0.0 2.4 1 1 1 2 2 2 0 PDZ domain Peptidase_S46 PF10459.9 gi|313125530|ref|YP_004035794.1| - 0.038 12.7 0.9 0.059 12.0 0.9 1.2 1 0 0 1 1 1 0 Peptidase S46 Peptidase_S32 PF05579.13 gi|313125530|ref|YP_004035794.1| - 0.055 12.6 3.7 2.7 7.1 0.3 2.8 3 0 0 3 3 3 0 Equine arteritis virus serine endopeptidase S32 GCHY-1 PF02649.14 gi|313125533|ref|YP_004035797.1| - 4e-75 252.7 1.2 4.5e-75 252.5 1.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 HTH_24 PF13412.6 gi|313125534|ref|YP_004035798.1| - 1.6e-10 40.3 0.1 1.7e-08 33.9 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313125534|ref|YP_004035798.1| - 4.2e-07 29.8 0.0 1e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|313125534|ref|YP_004035798.1| - 6.2e-07 28.8 0.1 1.2e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|313125534|ref|YP_004035798.1| - 2.3e-06 27.4 0.0 1.6e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|313125534|ref|YP_004035798.1| - 5.6e-06 26.1 0.5 6.1e-05 22.8 0.1 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_WhiA PF02650.14 gi|313125534|ref|YP_004035798.1| - 6.7e-05 23.1 0.0 0.001 19.4 0.0 2.4 2 0 0 2 2 2 1 WhiA C-terminal HTH domain HTH_11 PF08279.12 gi|313125534|ref|YP_004035798.1| - 0.00012 21.9 0.1 0.00081 19.3 0.0 2.3 3 0 0 3 3 3 1 HTH domain HTH_10 PF04967.12 gi|313125534|ref|YP_004035798.1| - 0.0002 21.1 0.5 0.011 15.5 0.2 2.9 2 1 0 2 2 1 1 HTH DNA binding domain HTH_5 PF01022.20 gi|313125534|ref|YP_004035798.1| - 0.00051 19.9 0.1 0.0056 16.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Tnp_Tc3_2 PF01498.18 gi|313125534|ref|YP_004035798.1| - 0.0035 17.6 0.0 0.39 11.0 0.0 2.5 2 0 0 2 2 2 1 Transposase HTH_23 PF13384.6 gi|313125534|ref|YP_004035798.1| - 0.0049 16.6 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|313125534|ref|YP_004035798.1| - 0.005 16.9 0.0 0.04 14.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|313125534|ref|YP_004035798.1| - 0.0068 16.4 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_IclR PF09339.10 gi|313125534|ref|YP_004035798.1| - 0.0099 15.7 0.0 0.039 13.8 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313125534|ref|YP_004035798.1| - 0.017 14.6 0.0 0.14 11.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.6 gi|313125534|ref|YP_004035798.1| - 0.024 14.6 0.7 0.062 13.3 0.0 2.0 3 0 0 3 3 1 0 Crp-like helix-turn-helix domain MbeD_MobD PF04899.12 gi|313125534|ref|YP_004035798.1| - 0.033 14.3 0.1 0.089 12.9 0.1 1.7 1 0 0 1 1 1 0 MbeD/MobD like HTH_Tnp_4 PF13613.6 gi|313125534|ref|YP_004035798.1| - 0.045 13.5 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease LexA_DNA_bind PF01726.16 gi|313125534|ref|YP_004035798.1| - 0.046 13.5 0.1 0.13 12.0 0.1 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_CodY PF08222.11 gi|313125534|ref|YP_004035798.1| - 0.061 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_DeoR PF08220.12 gi|313125534|ref|YP_004035798.1| - 0.061 13.1 0.2 3.2 7.6 0.0 2.9 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain HTH_50 PF18024.1 gi|313125534|ref|YP_004035798.1| - 0.076 12.6 0.0 0.77 9.4 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313125534|ref|YP_004035798.1| - 0.094 12.4 0.0 0.52 10.0 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|313125534|ref|YP_004035798.1| - 0.097 12.9 0.1 0.23 11.7 0.0 1.6 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_37 PF13744.6 gi|313125534|ref|YP_004035798.1| - 0.099 12.6 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|313125534|ref|YP_004035798.1| - 0.1 12.5 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_psq PF05225.16 gi|313125534|ref|YP_004035798.1| - 0.11 12.2 0.0 0.46 10.3 0.0 2.0 2 0 0 2 2 1 0 helix-turn-helix, Psq domain DUF1690 PF07956.11 gi|313125534|ref|YP_004035798.1| - 0.12 12.8 5.0 0.17 12.3 3.0 2.0 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) HTH_1 PF00126.27 gi|313125534|ref|YP_004035798.1| - 0.12 12.3 0.2 23 5.0 0.1 2.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.19 gi|313125534|ref|YP_004035798.1| - 0.12 12.2 0.0 0.39 10.6 0.0 1.9 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|313125534|ref|YP_004035798.1| - 0.13 12.0 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran_CTD PF16326.5 gi|313125534|ref|YP_004035798.1| - 0.16 12.3 1.7 0.81 10.0 0.1 2.6 2 1 0 2 2 2 0 ABC transporter C-terminal domain LPP PF04728.13 gi|313125534|ref|YP_004035798.1| - 0.94 9.9 5.1 0.25 11.8 0.8 2.3 3 0 0 3 3 2 0 Lipoprotein leucine-zipper TrmB PF01978.19 gi|313125535|ref|YP_004035799.1| - 3.3e-20 71.7 0.1 7.4e-20 70.6 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|313125535|ref|YP_004035799.1| - 0.00024 20.4 0.0 0.0004 19.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_9 PF08221.11 gi|313125535|ref|YP_004035799.1| - 0.0011 19.0 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain PadR PF03551.14 gi|313125535|ref|YP_004035799.1| - 0.0028 17.6 0.0 0.0068 16.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PLDc_2 PF13091.6 gi|313125535|ref|YP_004035799.1| - 0.0038 17.1 0.0 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 PLD-like domain Holin_BhlA PF10960.8 gi|313125535|ref|YP_004035799.1| - 0.0089 16.0 0.5 0.018 15.0 0.2 1.6 2 0 0 2 2 2 1 BhlA holin family HTH_IclR PF09339.10 gi|313125535|ref|YP_004035799.1| - 0.018 14.8 0.2 0.043 13.6 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain PDCD7 PF16021.5 gi|313125535|ref|YP_004035799.1| - 0.037 13.1 0.1 0.052 12.7 0.1 1.2 1 0 0 1 1 1 0 Programmed cell death protein 7 HTH_20 PF12840.7 gi|313125535|ref|YP_004035799.1| - 0.076 13.1 0.1 0.2 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Thioredox_DsbH PF03190.15 gi|313125536|ref|YP_004035800.1| - 1.6e-24 86.7 0.0 2.7e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|313125536|ref|YP_004035800.1| - 1.7e-12 47.4 0.0 4e-12 46.1 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin PF00085.20 gi|313125536|ref|YP_004035800.1| - 4.1e-07 29.9 0.0 7.6e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|313125536|ref|YP_004035800.1| - 0.00018 21.9 0.0 0.00033 21.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.11 gi|313125536|ref|YP_004035800.1| - 0.00048 19.5 2.8 0.063 12.5 0.3 3.0 2 1 1 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|313125536|ref|YP_004035800.1| - 0.43 10.0 2.9 3.7 7.0 0.3 2.8 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 FxsA PF04186.13 gi|313125537|ref|YP_004035801.1| - 3.4e-33 114.0 7.9 4.4e-33 113.7 7.9 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SplA PF11132.8 gi|313125539|ref|YP_004035803.1| - 0.032 14.0 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) YflT PF11181.8 gi|313125540|ref|YP_004035804.1| - 0.087 13.3 0.8 1 9.9 0.0 2.5 2 1 0 2 2 2 0 Heat induced stress protein YflT DUF4157 PF13699.6 gi|313125541|ref|YP_004035805.1| - 4.8e-31 106.8 0.9 1.2e-30 105.6 0.9 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313125541|ref|YP_004035805.1| - 0.03 14.7 0.3 0.058 13.7 0.3 1.5 1 0 0 1 1 1 0 Effector protein DUF3267 PF11667.8 gi|313125542|ref|YP_004035806.1| - 0.87 9.9 6.2 13 6.1 3.4 2.1 2 0 0 2 2 2 0 Putative zincin peptidase Melittin PF01372.17 gi|313125543|ref|YP_004035807.1| - 0.1 12.6 1.6 0.2 11.7 0.3 2.1 2 0 0 2 2 2 0 Melittin TrbC PF04956.13 gi|313125543|ref|YP_004035807.1| - 0.27 11.5 5.1 0.14 12.4 0.4 2.1 1 1 1 2 2 2 0 TrbC/VIRB2 family HTH_24 PF13412.6 gi|313125545|ref|YP_004035809.1| - 0.031 13.8 0.4 0.054 13.1 0.4 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SieB PF14163.6 gi|313125545|ref|YP_004035809.1| - 0.07 12.6 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 Super-infection exclusion protein B TctB PF07331.11 gi|313125545|ref|YP_004035809.1| - 0.11 12.8 2.6 0.18 12.1 2.6 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Mrr_N PF14338.6 gi|313125545|ref|YP_004035809.1| - 0.15 12.2 0.2 0.74 10.0 0.2 2.1 1 1 1 2 2 2 0 Mrr N-terminal domain SpecificRecomb PF10136.9 gi|313125545|ref|YP_004035809.1| - 0.42 8.9 1.8 0.31 9.3 0.3 1.5 2 0 0 2 2 2 0 Site-specific recombinase Ion_trans PF00520.31 gi|313125546|ref|YP_004035810.1| - 0.0056 15.9 0.0 0.011 15.0 0.0 1.6 1 1 0 1 1 1 1 Ion transport protein Ndc1_Nup PF09531.10 gi|313125546|ref|YP_004035810.1| - 0.034 12.8 1.1 0.045 12.4 1.1 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup PadR PF03551.14 gi|313125547|ref|YP_004035811.1| - 2.1e-05 24.4 0.0 4.2e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|313125547|ref|YP_004035811.1| - 0.00013 21.7 0.0 0.00027 20.7 0.0 1.7 1 1 0 1 1 1 1 HxlR-like helix-turn-helix DUF4065 PF13274.6 gi|313125547|ref|YP_004035811.1| - 0.00077 20.3 0.3 0.0012 19.7 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) Replic_Relax PF13814.6 gi|313125547|ref|YP_004035811.1| - 0.0014 18.7 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 Replication-relaxation DUF505 PF04458.12 gi|313125547|ref|YP_004035811.1| - 0.0034 15.8 0.1 0.0043 15.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) RTP PF02334.16 gi|313125547|ref|YP_004035811.1| - 0.0091 16.6 0.1 0.014 16.0 0.1 1.4 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|313125547|ref|YP_004035811.1| - 0.021 15.0 0.1 0.035 14.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pribosyltran PF00156.27 gi|313125548|ref|YP_004035812.1| - 1e-11 44.6 0.0 7.4e-11 41.8 0.0 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain HAD_SAK_2 PF18143.1 gi|313125548|ref|YP_004035812.1| - 0.34 11.2 1.8 0.58 10.5 0.3 2.2 2 1 0 2 2 2 0 HAD domain in Swiss Army Knife RNA repair proteins ApoO PF09769.9 gi|313125550|ref|YP_004035814.1| - 0.05 13.6 0.1 0.09 12.7 0.1 1.3 1 0 0 1 1 1 0 Apolipoprotein O FecCD PF01032.18 gi|313125551|ref|YP_004035815.1| - 1.5e-89 300.1 33.0 1.8e-89 299.8 33.0 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|313125551|ref|YP_004035815.1| - 0.00013 21.5 15.6 0.00013 21.5 15.6 2.2 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|313125552|ref|YP_004035816.1| - 1.7e-11 44.2 0.0 3.7e-11 43.0 0.0 1.5 1 1 1 2 2 2 1 Periplasmic binding protein DUF3558 PF12079.8 gi|313125552|ref|YP_004035816.1| - 2 8.4 8.5 3.7 7.5 8.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) HTH_Crp_2 PF13545.6 gi|313125553|ref|YP_004035817.1| - 0.00031 20.6 0.2 0.00056 19.8 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|313125553|ref|YP_004035817.1| - 0.00032 20.5 0.1 0.00064 19.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313125553|ref|YP_004035817.1| - 0.00033 20.5 0.5 0.0008 19.3 0.5 1.7 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|313125553|ref|YP_004035817.1| - 0.00036 20.3 0.1 0.00096 19.0 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|313125553|ref|YP_004035817.1| - 0.00096 19.0 0.2 0.0018 18.2 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313125553|ref|YP_004035817.1| - 0.0035 17.2 0.2 0.013 15.4 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|313125553|ref|YP_004035817.1| - 0.0067 16.2 0.3 0.016 15.0 0.3 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|313125553|ref|YP_004035817.1| - 0.046 13.7 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DprA_WH PF17782.1 gi|313125553|ref|YP_004035817.1| - 0.059 13.5 0.2 0.16 12.1 0.2 1.7 1 0 0 1 1 1 0 DprA winged helix domain HTH_20 PF12840.7 gi|313125553|ref|YP_004035817.1| - 0.064 13.3 0.9 0.064 13.3 0.9 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4370 PF14290.6 gi|313125553|ref|YP_004035817.1| - 0.085 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4370) DUF1724 PF08350.10 gi|313125553|ref|YP_004035817.1| - 0.16 12.2 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) Arg_repressor PF01316.21 gi|313125553|ref|YP_004035817.1| - 0.18 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Na_Ca_ex PF01699.24 gi|313125554|ref|YP_004035818.1| - 9.2e-42 142.6 34.4 6.3e-25 87.9 15.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Acetyltransf_9 PF13527.7 gi|313125555|ref|YP_004035819.1| - 1.3e-24 86.7 0.1 1.8e-23 83.0 0.0 2.5 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_17 PF17668.1 gi|313125555|ref|YP_004035819.1| - 6.4e-21 75.3 1.8 6.4e-21 75.3 1.8 2.4 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|313125555|ref|YP_004035819.1| - 4.7e-20 71.9 0.4 9e-20 71.0 0.4 1.5 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_1 PF00583.25 gi|313125555|ref|YP_004035819.1| - 0.016 15.4 0.0 0.29 11.4 0.0 2.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family FBP_C PF16571.5 gi|313125555|ref|YP_004035819.1| - 0.044 13.3 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 FBP C-terminal treble-clef zinc-finger PSII_Pbs27 PF13326.6 gi|313125558|ref|YP_004035822.1| - 0.094 13.0 0.3 0.14 12.5 0.1 1.3 2 0 0 2 2 2 0 Photosystem II Pbs27 Mod_r PF07200.13 gi|313125558|ref|YP_004035822.1| - 0.19 11.9 1.6 0.33 11.1 1.4 1.4 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein CPSase_L_D2 PF02786.17 gi|313125560|ref|YP_004035824.1| - 2.9e-96 321.0 0.2 2e-58 197.4 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|313125560|ref|YP_004035824.1| - 7.7e-25 87.6 0.1 1.7e-24 86.5 0.1 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|313125560|ref|YP_004035824.1| - 1.4e-14 54.0 0.0 7.7e-09 35.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|313125560|ref|YP_004035824.1| - 7.8e-14 51.7 0.0 2.5e-09 37.0 0.0 2.7 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|313125560|ref|YP_004035824.1| - 3e-13 49.6 0.0 2.4e-05 24.1 0.0 3.0 3 0 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|313125560|ref|YP_004035824.1| - 7e-11 42.4 0.1 1.2e-05 25.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Flavi_NS2B PF01002.19 gi|313125561|ref|YP_004035825.1| - 0.33 10.8 3.2 0.29 11.0 1.7 1.6 1 1 1 2 2 2 0 Flavivirus non-structural protein NS2B NAD_binding_10 PF13460.6 gi|313125562|ref|YP_004035826.1| - 5e-47 160.2 0.1 6.1e-47 159.9 0.1 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|313125562|ref|YP_004035826.1| - 7e-15 55.2 0.0 1.3e-14 54.4 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|313125562|ref|YP_004035826.1| - 5.8e-11 41.9 0.1 7.7e-11 41.5 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|313125562|ref|YP_004035826.1| - 1.5e-10 41.0 0.0 2.4e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.24 gi|313125562|ref|YP_004035826.1| - 7.5e-05 23.2 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|313125562|ref|YP_004035826.1| - 0.0031 16.7 0.1 0.02 14.1 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|313125562|ref|YP_004035826.1| - 0.0047 16.8 0.1 0.19 11.6 0.1 2.1 2 0 0 2 2 2 1 KR domain TrkA_N PF02254.18 gi|313125562|ref|YP_004035826.1| - 0.011 16.0 0.2 0.016 15.4 0.2 1.3 1 0 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 gi|313125562|ref|YP_004035826.1| - 0.025 14.7 0.1 0.043 13.9 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_4 PF07993.12 gi|313125562|ref|YP_004035826.1| - 0.041 13.0 0.0 15 4.7 0.0 2.9 2 1 1 3 3 3 0 Male sterility protein DXP_reductoisom PF02670.16 gi|313125562|ref|YP_004035826.1| - 0.11 13.2 0.4 1.6 9.5 0.0 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_kinase PF01513.21 gi|313125563|ref|YP_004035827.1| - 1.3e-32 113.2 1.4 1.9e-32 112.7 1.4 1.3 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|313125563|ref|YP_004035827.1| - 0.028 14.0 0.1 0.049 13.3 0.1 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain HGTP_anticodon PF03129.20 gi|313125563|ref|YP_004035827.1| - 0.12 12.6 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Anticodon binding domain ATPase PF06745.13 gi|313125564|ref|YP_004035828.1| - 9e-52 175.7 0.0 1.1e-51 175.4 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|313125564|ref|YP_004035828.1| - 7.6e-07 28.9 0.0 1.3e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|313125564|ref|YP_004035828.1| - 2.8e-06 26.2 0.1 6.3e-06 25.1 0.1 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|313125564|ref|YP_004035828.1| - 0.00013 21.4 0.0 0.006 15.9 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|313125564|ref|YP_004035828.1| - 0.00035 20.1 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|313125564|ref|YP_004035828.1| - 0.0012 18.6 0.0 0.0029 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|313125564|ref|YP_004035828.1| - 0.0021 17.9 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_14 PF13173.6 gi|313125564|ref|YP_004035828.1| - 0.0032 17.5 0.0 0.0081 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|313125564|ref|YP_004035828.1| - 0.0042 16.4 0.0 0.0058 15.9 0.0 1.2 1 0 0 1 1 1 1 Rad51 AAA_33 PF13671.6 gi|313125564|ref|YP_004035828.1| - 0.036 14.2 0.0 0.08 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|313125564|ref|YP_004035828.1| - 0.057 13.7 0.0 0.15 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|313125564|ref|YP_004035828.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|313125564|ref|YP_004035828.1| - 0.071 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|313125564|ref|YP_004035828.1| - 0.13 11.7 0.1 0.22 11.0 0.1 1.2 1 0 0 1 1 1 0 PhoH-like protein PPV_E1_C PF00519.17 gi|313125564|ref|YP_004035828.1| - 0.18 10.6 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase Zn-ribbon_8 PF09723.10 gi|313125565|ref|YP_004035829.1| - 1.1e-05 25.4 0.9 0.017 15.2 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|313125565|ref|YP_004035829.1| - 6e-05 22.9 1.1 0.025 14.5 0.1 2.4 2 0 0 2 2 2 2 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|313125565|ref|YP_004035829.1| - 0.0002 20.8 3.9 0.11 12.0 0.1 2.5 2 1 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|313125565|ref|YP_004035829.1| - 0.00033 19.9 2.0 0.38 10.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|313125565|ref|YP_004035829.1| - 0.00057 20.1 0.4 0.081 13.2 0.0 2.1 2 0 0 2 2 2 1 Ribosomal L32p protein family A2L_zn_ribbon PF08792.10 gi|313125565|ref|YP_004035829.1| - 0.00087 18.9 0.9 0.12 12.1 0.2 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|313125565|ref|YP_004035829.1| - 0.0013 18.9 1.0 1.2 9.5 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon Rubredoxin PF00301.20 gi|313125565|ref|YP_004035829.1| - 0.0023 17.9 1.7 1 9.4 0.0 2.4 1 1 1 2 2 2 2 Rubredoxin UPF0547 PF10571.9 gi|313125565|ref|YP_004035829.1| - 0.0087 16.1 2.7 0.2 11.7 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|313125565|ref|YP_004035829.1| - 0.0089 16.0 3.9 0.63 10.1 0.6 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|313125565|ref|YP_004035829.1| - 0.011 15.5 1.2 3.2 7.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|313125565|ref|YP_004035829.1| - 0.017 15.1 0.4 3.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|313125565|ref|YP_004035829.1| - 0.03 14.3 0.4 7.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RRN7 PF11781.8 gi|313125565|ref|YP_004035829.1| - 0.035 13.8 4.6 0.15 11.8 0.0 2.5 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|313125565|ref|YP_004035829.1| - 0.035 14.1 0.7 0.1 12.7 0.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|313125565|ref|YP_004035829.1| - 0.04 13.9 0.1 0.052 13.6 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|313125565|ref|YP_004035829.1| - 0.044 13.5 0.1 1 9.0 0.0 2.0 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 NMD3 PF04981.13 gi|313125565|ref|YP_004035829.1| - 0.049 13.1 0.2 0.16 11.4 0.2 1.6 1 1 0 1 1 1 0 NMD3 family ADK_lid PF05191.14 gi|313125565|ref|YP_004035829.1| - 0.067 13.2 1.4 3.4 7.7 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 gi|313125565|ref|YP_004035829.1| - 0.071 13.0 4.9 0.3 11.0 0.4 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-NADH-PPase PF09297.11 gi|313125565|ref|YP_004035829.1| - 0.076 12.7 3.4 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.6 gi|313125565|ref|YP_004035829.1| - 0.12 13.1 1.9 1.5 9.6 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.6 gi|313125565|ref|YP_004035829.1| - 0.19 12.2 2.8 18 6.0 1.0 2.6 2 1 0 2 2 2 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.12 gi|313125565|ref|YP_004035829.1| - 0.22 11.5 8.0 0.34 10.9 1.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Mss51 PF13824.6 gi|313125565|ref|YP_004035829.1| - 0.24 11.5 4.9 0.59 10.3 0.3 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.11 gi|313125565|ref|YP_004035829.1| - 0.26 11.3 3.1 7.9 6.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.6 gi|313125565|ref|YP_004035829.1| - 0.33 11.0 1.7 7.9 6.6 0.1 2.1 1 1 0 2 2 2 0 CpXC protein DUF35_N PF12172.8 gi|313125565|ref|YP_004035829.1| - 0.5 10.3 5.3 4 7.4 1.4 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.6 gi|313125565|ref|YP_004035829.1| - 0.7 9.7 2.7 4.8 7.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|313125565|ref|YP_004035829.1| - 1.3 9.1 6.5 2.6 8.1 0.6 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.26 gi|313125565|ref|YP_004035829.1| - 7.8 7.2 7.2 32 5.2 0.3 3.0 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-ACC PF17848.1 gi|313125565|ref|YP_004035829.1| - 9.2 6.4 6.8 18 5.5 1.7 2.4 2 1 1 3 3 3 0 Acetyl-coA carboxylase zinc finger domain HTH_23 PF13384.6 gi|313125566|ref|YP_004035830.1| - 0.0031 17.3 0.1 0.0062 16.3 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|313125566|ref|YP_004035830.1| - 0.0036 16.8 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|313125566|ref|YP_004035830.1| - 0.0055 16.3 0.2 0.0094 15.6 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 CENP-B_N PF04218.13 gi|313125566|ref|YP_004035830.1| - 0.0077 15.8 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_7 PF02796.15 gi|313125566|ref|YP_004035830.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Nitroreductase PF00881.24 gi|313125568|ref|YP_004035832.1| - 3.1e-31 108.7 0.0 5e-31 108.0 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|313125568|ref|YP_004035832.1| - 1.1e-07 31.6 0.0 0.00033 20.3 0.0 2.8 2 1 0 2 2 2 2 Putative TM nitroreductase Usp PF00582.26 gi|313125569|ref|YP_004035833.1| - 1.6e-31 109.7 0.2 1.8e-31 109.5 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF87 PF01935.17 gi|313125570|ref|YP_004035834.1| - 7.2e-13 49.2 0.0 1.3e-12 48.3 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|313125570|ref|YP_004035834.1| - 1e-05 24.4 0.1 0.041 12.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|313125570|ref|YP_004035834.1| - 0.0016 18.5 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|313125570|ref|YP_004035834.1| - 0.0029 16.6 0.0 0.0065 15.4 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|313125570|ref|YP_004035834.1| - 0.008 15.6 0.0 0.036 13.4 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|313125570|ref|YP_004035834.1| - 0.013 15.8 0.0 0.13 12.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|313125570|ref|YP_004035834.1| - 0.018 15.2 0.1 0.061 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|313125570|ref|YP_004035834.1| - 0.037 13.8 0.0 1.3 8.8 0.0 2.2 1 1 1 2 2 2 0 DEAD/DEAH box helicase T2SSE PF00437.20 gi|313125570|ref|YP_004035834.1| - 0.049 12.7 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|313125570|ref|YP_004035834.1| - 0.059 13.7 0.2 0.27 11.6 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain HAS-barrel PF09378.10 gi|313125570|ref|YP_004035834.1| - 0.1 12.7 0.0 0.28 11.4 0.0 1.7 1 0 0 1 1 1 0 HAS barrel domain Viral_helicase1 PF01443.18 gi|313125570|ref|YP_004035834.1| - 0.14 11.9 0.0 0.37 10.5 0.0 1.7 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF5633 PF18656.1 gi|313125571|ref|YP_004035835.1| - 0.015 15.2 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5633) DUF2188 PF09954.9 gi|313125571|ref|YP_004035835.1| - 0.086 13.0 0.3 0.17 12.1 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) NurA PF09376.10 gi|313125572|ref|YP_004035836.1| - 1.5e-17 64.1 0.0 1.9e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 NurA domain HAD_2 PF13419.6 gi|313125573|ref|YP_004035837.1| - 1.3e-20 74.3 0.0 1.6e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125573|ref|YP_004035837.1| - 4.6e-13 49.9 1.7 6.7e-13 49.4 1.7 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125573|ref|YP_004035837.1| - 1.4e-09 37.9 0.3 3.4e-09 36.7 0.3 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|313125573|ref|YP_004035837.1| - 1.1e-06 29.2 1.8 1.5e-06 28.7 1.8 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.14 gi|313125573|ref|YP_004035837.1| - 0.011 14.7 0.3 0.11 11.4 0.0 2.4 2 1 1 3 3 3 0 5' nucleotidase family MR_MLE_C PF13378.6 gi|313125574|ref|YP_004035838.1| - 0.023 14.2 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Enolase C-terminal domain-like DUF2240 PF09999.9 gi|313125575|ref|YP_004035839.1| - 1.9e-51 173.5 0.1 2.2e-51 173.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Ribosomal_S8e PF01201.22 gi|313125576|ref|YP_004035840.1| - 3.7e-33 114.6 2.4 4.2e-33 114.4 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PhoU PF01895.19 gi|313125577|ref|YP_004035841.1| - 7.9e-23 80.7 9.1 4.8e-18 65.4 1.3 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|313125577|ref|YP_004035841.1| - 4.8e-11 42.3 0.0 1.1e-10 41.2 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HisKA PF00512.25 gi|313125577|ref|YP_004035841.1| - 0.47 10.5 5.5 0.43 10.6 0.4 3.1 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain PBP_like_2 PF12849.7 gi|313125578|ref|YP_004035842.1| - 1.2e-21 77.6 4.0 2.7e-21 76.5 1.9 2.3 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|313125578|ref|YP_004035842.1| - 8.3e-11 41.4 0.0 1.3e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|313125578|ref|YP_004035842.1| - 0.28 11.1 6.0 0.49 10.3 6.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PBP_like_2 PF12849.7 gi|313125579|ref|YP_004035843.1| - 6.9e-20 71.9 2.8 4.9e-19 69.1 2.8 2.2 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|313125579|ref|YP_004035843.1| - 2.1e-11 43.3 0.1 3.4e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|313125579|ref|YP_004035843.1| - 0.27 11.2 0.2 0.27 11.2 0.2 1.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|313125580|ref|YP_004035844.1| - 3.6e-18 65.9 13.3 3.6e-18 65.9 13.3 2.9 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component YpmT PF17431.2 gi|313125580|ref|YP_004035844.1| - 0.4 10.7 2.3 1.4 9.0 2.3 2.1 1 0 0 1 1 1 0 Uncharacterized YmpT-like BPD_transp_1 PF00528.22 gi|313125581|ref|YP_004035845.1| - 4.3e-24 85.3 9.8 4.3e-24 85.3 9.8 4.8 3 2 1 4 4 4 1 Binding-protein-dependent transport system inner membrane component DUF3149 PF11346.8 gi|313125581|ref|YP_004035845.1| - 1.7 8.3 6.5 0.41 10.3 0.7 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) Phage_holin_2_3 PF16080.5 gi|313125581|ref|YP_004035845.1| - 4 7.3 7.0 1.5 8.7 2.1 3.1 2 0 0 2 2 2 0 Bacteriophage holin family HP1 ABC_tran PF00005.27 gi|313125582|ref|YP_004035846.1| - 9.8e-31 107.1 0.0 1.6e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125582|ref|YP_004035846.1| - 1.1e-12 48.3 0.0 3e-06 27.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313125582|ref|YP_004035846.1| - 7.1e-08 32.1 0.2 5.5e-06 26.0 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|313125582|ref|YP_004035846.1| - 3.1e-07 30.5 0.0 2.7e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313125582|ref|YP_004035846.1| - 5.3e-05 23.5 0.0 0.00022 21.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|313125582|ref|YP_004035846.1| - 0.00032 20.4 0.0 0.00074 19.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|313125582|ref|YP_004035846.1| - 0.00033 21.1 0.2 0.00093 19.6 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313125582|ref|YP_004035846.1| - 0.00074 19.5 0.0 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|313125582|ref|YP_004035846.1| - 0.0026 18.3 0.1 0.0043 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|313125582|ref|YP_004035846.1| - 0.0029 17.2 0.1 0.014 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|313125582|ref|YP_004035846.1| - 0.0089 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain G-alpha PF00503.20 gi|313125582|ref|YP_004035846.1| - 0.041 13.0 0.0 0.065 12.4 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|313125582|ref|YP_004035846.1| - 0.042 14.4 0.1 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|313125582|ref|YP_004035846.1| - 0.044 14.0 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313125582|ref|YP_004035846.1| - 0.056 13.2 0.1 0.97 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|313125582|ref|YP_004035846.1| - 0.058 12.6 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 gi|313125582|ref|YP_004035846.1| - 0.065 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DeoRC PF00455.22 gi|313125582|ref|YP_004035846.1| - 0.098 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain RNA_helicase PF00910.22 gi|313125582|ref|YP_004035846.1| - 0.11 12.9 0.1 0.53 10.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Adeno_IVa2 PF02456.15 gi|313125582|ref|YP_004035846.1| - 0.16 10.7 0.0 2.8 6.7 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein PhoU PF01895.19 gi|313125583|ref|YP_004035847.1| - 9.1e-40 135.0 11.5 6.7e-21 74.6 2.1 2.3 2 0 0 2 2 2 2 PhoU domain DUF2628 PF10947.8 gi|313125584|ref|YP_004035848.1| - 0.26 11.7 6.2 0.29 11.5 6.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2583 PF10762.9 gi|313125584|ref|YP_004035848.1| - 2.1 8.8 7.7 0.34 11.4 3.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) AAA PF00004.29 gi|313125585|ref|YP_004035849.1| - 1.7e-101 335.9 0.0 7.9e-50 168.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|313125585|ref|YP_004035849.1| - 1.3e-30 105.4 0.0 7.9e-30 102.9 0.0 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|313125585|ref|YP_004035849.1| - 4.2e-30 103.3 5.2 4.4e-15 55.2 1.3 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|313125585|ref|YP_004035849.1| - 9.1e-17 60.6 0.1 6.6e-16 57.8 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|313125585|ref|YP_004035849.1| - 1.6e-15 57.2 0.0 5.3e-07 29.5 0.0 3.0 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|313125585|ref|YP_004035849.1| - 1.4e-14 54.3 1.4 3.4e-06 27.1 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|313125585|ref|YP_004035849.1| - 2.5e-14 54.0 1.7 3.9e-06 27.3 0.1 4.1 3 2 1 4 4 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|313125585|ref|YP_004035849.1| - 4.7e-13 49.6 0.0 8.6e-06 26.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|313125585|ref|YP_004035849.1| - 1.7e-11 43.9 0.0 5.8e-05 22.5 0.0 3.2 4 0 0 4 4 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|313125585|ref|YP_004035849.1| - 5.4e-11 42.9 1.3 0.0013 19.0 0.1 4.4 2 2 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|313125585|ref|YP_004035849.1| - 1.4e-10 41.5 0.0 0.00011 22.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|313125585|ref|YP_004035849.1| - 1.8e-08 34.5 0.0 0.0048 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|313125585|ref|YP_004035849.1| - 6.8e-08 33.1 0.0 0.011 16.3 0.0 3.0 2 1 1 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|313125585|ref|YP_004035849.1| - 8.1e-08 32.2 0.0 0.017 14.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|313125585|ref|YP_004035849.1| - 2.1e-07 30.7 0.5 2.1 7.8 0.0 4.4 4 0 0 4 4 4 2 AAA domain Sigma54_activat PF00158.26 gi|313125585|ref|YP_004035849.1| - 4.5e-07 29.7 0.1 0.045 13.5 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|313125585|ref|YP_004035849.1| - 9.1e-07 28.5 0.1 0.046 13.1 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|313125585|ref|YP_004035849.1| - 1.3e-06 28.7 0.0 0.059 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|313125585|ref|YP_004035849.1| - 2e-06 27.5 0.0 0.04 13.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|313125585|ref|YP_004035849.1| - 5.3e-06 25.9 0.3 0.5 9.7 0.0 3.7 3 0 0 3 3 3 2 KaiC AAA_28 PF13521.6 gi|313125585|ref|YP_004035849.1| - 6.6e-06 26.5 0.0 0.038 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|313125585|ref|YP_004035849.1| - 1.1e-05 26.0 0.0 0.22 12.0 0.0 2.7 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|313125585|ref|YP_004035849.1| - 1.2e-05 24.6 0.0 0.17 11.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_3 PF07726.11 gi|313125585|ref|YP_004035849.1| - 1.7e-05 24.7 0.0 0.21 11.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|313125585|ref|YP_004035849.1| - 1.9e-05 24.2 0.1 0.43 10.0 0.0 3.2 3 0 0 3 3 3 2 PhoH-like protein ATPase_2 PF01637.18 gi|313125585|ref|YP_004035849.1| - 2.6e-05 24.3 0.1 0.73 9.7 0.0 4.0 2 2 0 3 3 3 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|313125585|ref|YP_004035849.1| - 2.8e-05 24.1 0.0 0.18 11.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|313125585|ref|YP_004035849.1| - 3.1e-05 23.8 0.0 0.15 11.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|313125585|ref|YP_004035849.1| - 3.3e-05 23.8 0.2 0.29 10.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|313125585|ref|YP_004035849.1| - 4.7e-05 22.8 0.2 0.083 12.2 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin NB-ARC PF00931.22 gi|313125585|ref|YP_004035849.1| - 5.6e-05 22.5 0.0 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.9 gi|313125585|ref|YP_004035849.1| - 6.8e-05 22.3 0.0 0.34 10.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|313125585|ref|YP_004035849.1| - 8.9e-05 22.3 0.1 0.51 10.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|313125585|ref|YP_004035849.1| - 0.00017 20.8 0.1 0.21 10.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|313125585|ref|YP_004035849.1| - 0.0003 21.2 0.0 0.83 10.1 0.0 3.4 3 0 0 3 3 2 1 AAA domain Vps4_C PF09336.10 gi|313125585|ref|YP_004035849.1| - 0.00035 20.5 1.9 0.034 14.2 0.0 3.0 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Sigma54_activ_2 PF14532.6 gi|313125585|ref|YP_004035849.1| - 0.00063 19.9 0.0 1.3 9.2 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|313125585|ref|YP_004035849.1| - 0.00063 20.1 0.6 1.3 9.3 0.0 3.0 2 1 1 3 3 2 1 AAA domain NACHT PF05729.12 gi|313125585|ref|YP_004035849.1| - 0.00075 19.5 0.5 0.57 10.1 0.0 3.1 4 0 0 4 4 2 1 NACHT domain NTPase_1 PF03266.15 gi|313125585|ref|YP_004035849.1| - 0.0017 18.3 0.4 3.6 7.5 0.0 3.3 3 1 1 4 4 2 0 NTPase Cytidylate_kin PF02224.18 gi|313125585|ref|YP_004035849.1| - 0.0031 17.3 0.1 2.3 7.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase IPT PF01745.16 gi|313125585|ref|YP_004035849.1| - 0.005 16.3 1.0 1.2 8.4 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase Bac_DnaA PF00308.18 gi|313125585|ref|YP_004035849.1| - 0.0056 16.5 0.0 3.7 7.3 0.0 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein Rad17 PF03215.15 gi|313125585|ref|YP_004035849.1| - 0.0059 16.5 0.0 1 9.3 0.0 2.6 2 1 1 3 3 2 1 Rad17 P-loop domain ResIII PF04851.15 gi|313125585|ref|YP_004035849.1| - 0.0084 16.1 0.0 5 7.1 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|313125585|ref|YP_004035849.1| - 0.0093 14.9 0.0 2.1 7.1 0.0 2.2 2 0 0 2 2 2 1 AFG1-like ATPase SKI PF01202.22 gi|313125585|ref|YP_004035849.1| - 0.01 16.0 0.0 5.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin2 PF13189.6 gi|313125585|ref|YP_004035849.1| - 0.011 15.9 0.1 7.9 6.6 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase-like family KAP_NTPase PF07693.14 gi|313125585|ref|YP_004035849.1| - 0.012 14.9 0.1 4.1 6.5 0.0 3.1 2 2 1 3 3 3 0 KAP family P-loop domain TniB PF05621.11 gi|313125585|ref|YP_004035849.1| - 0.012 15.0 0.0 10 5.4 0.0 3.4 4 0 0 4 4 3 0 Bacterial TniB protein Zot PF05707.12 gi|313125585|ref|YP_004035849.1| - 0.023 14.3 0.0 2.9 7.5 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) CPT PF07931.12 gi|313125585|ref|YP_004035849.1| - 0.026 14.4 0.0 3.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|313125585|ref|YP_004035849.1| - 0.029 14.5 0.0 4.5 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Hydin_ADK PF17213.3 gi|313125585|ref|YP_004035849.1| - 0.038 14.3 0.1 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Viral_helicase1 PF01443.18 gi|313125585|ref|YP_004035849.1| - 0.038 13.7 0.0 3.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Guanylate_kin PF00625.21 gi|313125585|ref|YP_004035849.1| - 0.05 13.3 0.2 55 3.4 0.0 3.6 3 1 1 4 4 3 0 Guanylate kinase AAA_29 PF13555.6 gi|313125585|ref|YP_004035849.1| - 0.071 12.9 0.0 15 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain KTI12 PF08433.10 gi|313125585|ref|YP_004035849.1| - 0.1 12.0 0.0 47 3.3 0.0 3.1 3 0 0 3 3 3 0 Chromatin associated protein KTI12 DUF111 PF01969.17 gi|313125586|ref|YP_004035850.1| - 1.2e-123 413.0 17.1 8.9e-123 410.1 17.1 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF111 DUF460 PF04312.13 gi|313125587|ref|YP_004035851.1| - 0.034 13.9 1.6 0.088 12.5 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF460) Big_3_3 PF13750.6 gi|313125587|ref|YP_004035851.1| - 0.13 11.9 0.1 0.29 10.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Rad51 PF08423.11 gi|313125588|ref|YP_004035852.1| - 5.2e-29 101.3 0.0 6.3e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|313125588|ref|YP_004035852.1| - 1.2e-13 51.1 0.4 1.7e-13 50.6 0.4 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|313125588|ref|YP_004035852.1| - 2e-12 47.1 0.4 3.3e-12 46.5 0.4 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|313125588|ref|YP_004035852.1| - 7.6e-12 45.1 0.0 2.5e-11 43.4 0.0 1.7 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|313125588|ref|YP_004035852.1| - 3.7e-10 39.8 0.0 4.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|313125588|ref|YP_004035852.1| - 7.1e-07 29.1 0.0 1.5e-06 28.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|313125588|ref|YP_004035852.1| - 7.6e-05 22.2 0.0 0.00014 21.3 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|313125588|ref|YP_004035852.1| - 0.00017 22.0 0.2 0.00023 21.6 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain CobU PF02283.16 gi|313125588|ref|YP_004035852.1| - 0.005 16.4 0.7 0.028 14.0 0.7 1.9 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase IstB_IS21 PF01695.17 gi|313125588|ref|YP_004035852.1| - 0.019 14.7 0.2 0.062 13.0 0.0 1.8 1 1 1 2 2 2 0 IstB-like ATP binding protein CobA_CobO_BtuR PF02572.15 gi|313125588|ref|YP_004035852.1| - 0.043 14.1 1.6 0.15 12.3 1.6 1.9 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA PF00004.29 gi|313125588|ref|YP_004035852.1| - 0.052 14.0 0.1 0.12 12.9 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|313125588|ref|YP_004035852.1| - 0.077 12.9 0.0 0.11 12.4 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PAXNEB PF05625.11 gi|313125588|ref|YP_004035852.1| - 0.18 10.9 0.1 0.33 10.1 0.1 1.3 1 0 0 1 1 1 0 PAXNEB protein CBS PF00571.28 gi|313125589|ref|YP_004035853.1| - 2.4e-37 127.2 13.1 2.4e-14 53.5 0.4 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|313125589|ref|YP_004035853.1| - 0.04 14.7 0.9 0.13 13.0 0.1 2.2 2 1 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Ribosomal_L9_C PF03948.14 gi|313125589|ref|YP_004035853.1| - 0.061 13.8 0.1 1.2 9.6 0.0 2.7 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain Big_6 PF17936.1 gi|313125589|ref|YP_004035853.1| - 0.11 12.8 0.0 0.74 10.1 0.0 2.3 3 0 0 3 3 3 0 Bacterial Ig domain Peptidase_S8 PF00082.22 gi|313125590|ref|YP_004035854.1| - 1.1e-24 87.2 2.6 3.4e-22 79.1 2.6 2.7 1 1 0 1 1 1 1 Subtilase family PQQ_3 PF13570.6 gi|313125590|ref|YP_004035854.1| - 0.86 10.2 3.6 52 4.5 0.1 4.0 3 0 0 3 3 3 0 PQQ-like domain HTH_20 PF12840.7 gi|313125591|ref|YP_004035855.1| - 5e-15 55.3 0.1 9e-15 54.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313125591|ref|YP_004035855.1| - 5.6e-06 26.1 0.0 1.1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313125591|ref|YP_004035855.1| - 9.7e-06 25.4 0.2 5e-05 23.1 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 gi|313125591|ref|YP_004035855.1| - 0.0012 18.4 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|313125591|ref|YP_004035855.1| - 0.0017 18.8 0.1 0.0052 17.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313125591|ref|YP_004035855.1| - 0.0068 16.2 0.0 0.027 14.3 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain Dimerisation2 PF16864.5 gi|313125591|ref|YP_004035855.1| - 0.038 14.0 0.0 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 Dimerisation domain DUF2513 PF10711.9 gi|313125591|ref|YP_004035855.1| - 0.078 13.3 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) TrmB PF01978.19 gi|313125591|ref|YP_004035855.1| - 0.081 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|313125591|ref|YP_004035855.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 B-block_TFIIIC PF04182.12 gi|313125591|ref|YP_004035855.1| - 0.11 12.7 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Sigma70_r4_2 PF08281.12 gi|313125591|ref|YP_004035855.1| - 0.13 11.9 0.0 0.39 10.4 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 MG2 PF01835.19 gi|313125592|ref|YP_004035856.1| - 0.0042 17.5 1.0 0.055 13.9 0.1 3.0 2 2 2 4 4 4 1 MG2 domain Glyco_trans_1_3 PF13528.6 gi|313125594|ref|YP_004035858.1| - 0.0002 20.7 0.0 0.00052 19.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 1 Glyco_transf_4 PF13439.6 gi|313125594|ref|YP_004035858.1| - 0.0016 18.4 0.0 0.004 17.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 UPF0180 PF03698.13 gi|313125594|ref|YP_004035858.1| - 0.083 13.1 0.0 0.55 10.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) DUF3349 PF11829.8 gi|313125594|ref|YP_004035858.1| - 0.097 13.5 0.0 0.27 12.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) UCR_Fe-S_N PF10399.9 gi|313125594|ref|YP_004035858.1| - 3.1 7.2 6.4 0.61 9.5 1.7 2.4 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal OrfB_IS605 PF01385.19 gi|313125595|ref|YP_004035859.1| - 2.4e-30 105.2 0.1 5e-30 104.2 0.1 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313125595|ref|YP_004035859.1| - 1e-19 70.2 0.5 2e-19 69.2 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|313125595|ref|YP_004035859.1| - 1.3 8.6 4.5 3.1 7.4 4.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Glyco_transf_21 PF13506.6 gi|313125597|ref|YP_004035861.1| - 1.5e-10 40.8 0.1 4.7e-10 39.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|313125597|ref|YP_004035861.1| - 7.8e-06 25.8 2.3 2.9e-05 24.0 1.8 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313125597|ref|YP_004035861.1| - 0.0011 18.9 0.0 0.0016 18.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 CAF-1_p150 PF11600.8 gi|313125598|ref|YP_004035862.1| - 0.0017 18.0 4.8 0.0021 17.8 4.8 1.1 1 0 0 1 1 1 1 Chromatin assembly factor 1 complex p150 subunit, N-terminal Cob_adeno_trans PF01923.18 gi|313125599|ref|YP_004035863.1| - 1.8e-55 187.5 0.0 2e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Osmo_CC PF08946.10 gi|313125599|ref|YP_004035863.1| - 0.0078 16.4 1.3 0.42 10.9 0.0 2.4 2 0 0 2 2 2 1 Osmosensory transporter coiled coil CLZ PF16526.5 gi|313125599|ref|YP_004035863.1| - 0.04 14.3 0.3 17 5.8 0.1 2.6 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ABATE PF07336.11 gi|313125599|ref|YP_004035863.1| - 0.12 13.0 2.1 0.18 12.4 2.1 1.6 1 1 0 1 1 1 0 Putative stress-induced transcription regulator GST_N_3 PF13417.6 gi|313125600|ref|YP_004035864.1| - 3.5e-15 56.2 0.0 4.2e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|313125600|ref|YP_004035864.1| - 1.4e-14 54.1 0.0 1.7e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|313125600|ref|YP_004035864.1| - 6e-14 52.1 0.0 6.9e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|313125600|ref|YP_004035864.1| - 2.2e-07 31.1 0.0 2.7e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.6 gi|313125600|ref|YP_004035864.1| - 0.004 17.2 0.1 0.0051 16.8 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|313125600|ref|YP_004035864.1| - 0.0091 16.4 0.1 0.013 15.9 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|313125600|ref|YP_004035864.1| - 0.01 16.3 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Tom37 PF10568.9 gi|313125600|ref|YP_004035864.1| - 0.18 12.1 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein DUF4625 PF15418.6 gi|313125601|ref|YP_004035865.1| - 1.1e-14 54.8 33.1 0.075 13.3 0.5 13.7 8 3 4 13 13 13 4 Domain of unknown function (DUF4625) Big_3_4 PF13754.6 gi|313125601|ref|YP_004035865.1| - 8.3e-05 22.3 9.3 1.6 8.5 0.0 7.4 7 0 0 7 7 7 1 Domain of unknown function Big_3_3 PF13750.6 gi|313125601|ref|YP_004035865.1| - 0.00047 19.8 76.5 0.0092 15.7 4.5 11.0 8 3 3 11 11 11 9 Bacterial Ig-like domain (group 3) DUF2213 PF09979.9 gi|313125601|ref|YP_004035865.1| - 0.0086 16.1 5.1 0.19 11.7 0.1 4.0 4 0 0 4 4 4 1 Uncharacterized protein conserved in bacteria (DUF2213) Y_Y_Y PF07495.13 gi|313125601|ref|YP_004035865.1| - 0.011 15.7 2.1 7.1 6.7 0.0 4.3 4 0 0 4 4 4 0 Y_Y_Y domain Big_3_5 PF16640.5 gi|313125601|ref|YP_004035865.1| - 0.011 15.9 6.1 0.011 15.9 6.1 16.8 10 3 7 17 17 11 0 Bacterial Ig-like domain (group 3) PGF-CTERM PF18204.1 gi|313125601|ref|YP_004035865.1| - 0.012 15.5 1.7 0.029 14.3 1.7 1.6 1 0 0 1 1 1 0 PGF-CTERM motif MG2 PF01835.19 gi|313125601|ref|YP_004035865.1| - 0.014 15.8 25.7 11 6.5 0.0 9.5 8 1 2 10 10 10 0 MG2 domain Big_7 PF17957.1 gi|313125601|ref|YP_004035865.1| - 0.031 15.0 190.6 0.064 14.0 9.2 15.6 14 2 1 15 15 14 0 Bacterial Ig domain DUF3416 PF11896.8 gi|313125601|ref|YP_004035865.1| - 0.057 13.7 8.3 0.56 10.5 0.1 5.0 6 0 0 6 6 6 0 Domain of unknown function (DUF3416) Porphyrn_cat_1 PF18206.1 gi|313125601|ref|YP_004035865.1| - 1 10.0 5.4 1.5 9.5 0.1 3.4 3 0 0 3 3 2 0 Porphyranase catalytic subdomain 1 DUF756 PF05506.12 gi|313125601|ref|YP_004035865.1| - 2.6 9.0 21.5 0.42 11.5 0.2 7.4 8 1 0 8 8 8 0 Domain of unknown function (DUF756) MG1 PF17790.1 gi|313125601|ref|YP_004035865.1| - 3.9 8.0 6.9 21 5.6 0.0 5.2 5 1 1 6 6 5 0 Macroglobulin domain MG1 4HBT PF03061.22 gi|313125602|ref|YP_004035866.1| - 8.1e-18 64.6 0.1 1.2e-17 64.0 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 2-Hacid_dh_C PF02826.19 gi|313125603|ref|YP_004035867.1| - 2.7e-50 170.2 0.0 3.4e-50 169.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|313125603|ref|YP_004035867.1| - 8.4e-08 31.9 0.0 1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|313125603|ref|YP_004035867.1| - 1.3e-06 28.7 0.0 2.1e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|313125603|ref|YP_004035867.1| - 6.6e-05 23.4 0.0 0.00012 22.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|313125603|ref|YP_004035867.1| - 0.025 14.6 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|313125603|ref|YP_004035867.1| - 0.04 13.8 0.1 0.074 12.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|313125603|ref|YP_004035867.1| - 0.11 12.7 0.1 0.42 10.9 0.0 2.1 2 1 0 2 2 2 0 TrkA-N domain SUI1 PF01253.22 gi|313125604|ref|YP_004035868.1| - 8.8e-16 58.2 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|313125604|ref|YP_004035868.1| - 0.00036 20.8 0.0 0.00045 20.5 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) ThiS-like PF14453.6 gi|313125604|ref|YP_004035868.1| - 0.027 14.5 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 ThiS-like ubiquitin zf-H2C2_2 PF13465.6 gi|313125605|ref|YP_004035869.1| - 5.8e-05 23.3 1.2 0.013 15.9 0.0 2.1 2 0 0 2 2 2 2 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|313125605|ref|YP_004035869.1| - 0.00015 21.7 0.9 0.0002 21.3 0.9 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|313125605|ref|YP_004035869.1| - 0.0062 16.5 2.3 1.7 8.7 0.2 2.2 2 0 0 2 2 2 2 Rubredoxin zinc_ribbon_10 PF10058.9 gi|313125605|ref|YP_004035869.1| - 0.016 14.9 0.5 3.2 7.5 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Lar_restr_allev PF14354.6 gi|313125605|ref|YP_004035869.1| - 0.02 15.2 0.6 0.023 15.1 0.6 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2 PF00096.26 gi|313125605|ref|YP_004035869.1| - 0.022 15.2 1.0 2.6 8.6 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|313125605|ref|YP_004035869.1| - 0.023 14.8 0.3 3.3 7.9 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|313125605|ref|YP_004035869.1| - 0.043 13.7 1.4 1 9.3 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin_2 PF18073.1 gi|313125605|ref|YP_004035869.1| - 0.055 13.2 4.5 0.25 11.1 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ogr_Delta PF04606.12 gi|313125605|ref|YP_004035869.1| - 0.062 13.3 0.4 0.097 12.7 0.4 1.4 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Ribosomal_L37ae PF01780.19 gi|313125605|ref|YP_004035869.1| - 0.074 13.1 1.5 0.6 10.2 1.5 1.9 1 1 0 1 1 1 0 Ribosomal L37ae protein family Zn_ribbon_SprT PF17283.2 gi|313125605|ref|YP_004035869.1| - 0.11 12.5 2.0 2.1 8.3 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain UPF0547 PF10571.9 gi|313125605|ref|YP_004035869.1| - 0.22 11.6 8.5 1.7 8.8 1.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.6 gi|313125605|ref|YP_004035869.1| - 0.43 10.7 4.7 4 7.6 4.5 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|313125605|ref|YP_004035869.1| - 0.55 9.9 3.8 11 5.8 0.5 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_5 PF13719.6 gi|313125605|ref|YP_004035869.1| - 1.8 8.4 5.1 16 5.3 5.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Aminotran_5 PF00266.19 gi|313125606|ref|YP_004035870.1| - 3.9e-09 35.9 0.0 5.7e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|313125606|ref|YP_004035870.1| - 1.9e-07 30.3 0.0 1e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|313125606|ref|YP_004035870.1| - 0.018 14.3 0.0 0.035 13.4 0.0 1.4 2 0 0 2 2 2 0 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|313125606|ref|YP_004035870.1| - 0.03 13.5 0.0 0.041 13.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II GDC-P PF02347.16 gi|313125607|ref|YP_004035871.1| - 1.9e-105 353.2 0.0 2.2e-105 353.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|313125607|ref|YP_004035871.1| - 3.8e-06 26.1 0.1 6.1e-06 25.4 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|313125607|ref|YP_004035871.1| - 8e-05 21.3 0.0 0.00012 20.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme RtcR PF06956.11 gi|313125607|ref|YP_004035871.1| - 0.024 14.1 0.0 0.054 12.9 0.0 1.6 1 0 0 1 1 1 0 Regulator of RNA terminal phosphate cyclase GCV_H PF01597.19 gi|313125608|ref|YP_004035872.1| - 2.5e-45 153.3 0.0 2.8e-45 153.2 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|313125608|ref|YP_004035872.1| - 0.0013 18.5 0.2 0.0037 17.1 0.2 1.7 1 1 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|313125608|ref|YP_004035872.1| - 0.0018 18.2 0.0 0.011 15.6 0.0 1.9 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.9 gi|313125608|ref|YP_004035872.1| - 0.069 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) AOC_like PF18678.1 gi|313125608|ref|YP_004035872.1| - 0.07 12.7 0.1 5.2 6.7 0.0 2.1 2 0 0 2 2 2 0 Allene oxide cyclase barrel like domain GCV_T PF01571.21 gi|313125609|ref|YP_004035873.1| - 6.7e-83 278.0 0.1 7.9e-83 277.7 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|313125609|ref|YP_004035873.1| - 1.1e-23 82.9 0.1 2.2e-23 82.0 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|313125609|ref|YP_004035873.1| - 0.071 13.3 0.1 3.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.9 gi|313125609|ref|YP_004035873.1| - 0.096 13.0 0.0 3.5 8.0 0.0 2.2 2 0 0 2 2 2 0 GTP-binding protein TrmE N-terminus Wzy_C PF04932.15 gi|313125610|ref|YP_004035874.1| - 0.074 12.7 2.7 0.083 12.5 2.7 1.1 1 0 0 1 1 1 0 O-Antigen ligase MerE PF05052.12 gi|313125610|ref|YP_004035874.1| - 0.11 12.4 2.7 0.14 12.1 2.7 1.2 1 0 0 1 1 1 0 MerE protein HATPase_c PF02518.26 gi|313125612|ref|YP_004035876.1| - 1.6e-18 67.2 0.0 2.8e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|313125612|ref|YP_004035876.1| - 2.1e-16 59.9 1.7 6.5e-16 58.3 1.7 1.8 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|313125612|ref|YP_004035876.1| - 2.9e-07 30.5 0.0 6.3e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|313125612|ref|YP_004035876.1| - 1.2e-06 28.3 0.0 2.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|313125612|ref|YP_004035876.1| - 0.0005 20.0 0.5 0.0011 19.0 0.5 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|313125612|ref|YP_004035876.1| - 0.006 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|313125612|ref|YP_004035876.1| - 0.067 12.9 0.2 0.17 11.6 0.2 1.7 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF1724 PF08350.10 gi|313125613|ref|YP_004035877.1| - 2.1e-07 31.0 0.0 3.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR_2 PF12802.7 gi|313125613|ref|YP_004035877.1| - 2.6e-05 24.0 0.1 7.5e-05 22.5 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313125613|ref|YP_004035877.1| - 9.5e-05 22.2 0.0 0.0003 20.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HemN_C PF06969.16 gi|313125613|ref|YP_004035877.1| - 0.0014 18.7 0.0 0.0054 16.8 0.0 2.1 1 0 0 1 1 1 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|313125613|ref|YP_004035877.1| - 0.0089 16.0 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|313125613|ref|YP_004035877.1| - 0.049 13.4 1.0 0.16 11.8 0.0 2.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain EamA PF00892.20 gi|313125614|ref|YP_004035884.1| - 3e-37 127.8 31.6 9.8e-21 74.4 9.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|313125614|ref|YP_004035884.1| - 0.083 12.9 2.8 3.8 7.6 0.2 2.5 2 0 0 2 2 2 0 Putative transmembrane family 234 DUF2919 PF11143.8 gi|313125614|ref|YP_004035884.1| - 9.4 6.6 6.6 1.2 9.5 0.4 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2919) GTP-bdg_N PF13167.6 gi|313125615|ref|YP_004035885.1| - 1.9e-19 70.1 0.0 5.7e-19 68.6 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|313125615|ref|YP_004035885.1| - 1.3e-14 54.2 0.4 7.7e-14 51.7 0.1 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|313125615|ref|YP_004035885.1| - 1.7e-08 34.3 0.7 5.1e-08 32.7 0.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_M PF16360.5 gi|313125615|ref|YP_004035885.1| - 3.5e-08 33.9 3.7 1.1e-07 32.3 1.7 2.6 2 1 0 2 2 2 1 GTP-binding GTPase Middle Region RsgA_GTPase PF03193.16 gi|313125615|ref|YP_004035885.1| - 3.2e-07 30.4 0.4 0.0046 16.9 0.5 2.6 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|313125615|ref|YP_004035885.1| - 0.0017 18.4 0.0 0.0054 16.7 0.0 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|313125615|ref|YP_004035885.1| - 0.0038 16.8 0.5 0.72 9.4 0.3 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B DUF11 PF01345.18 gi|313125615|ref|YP_004035885.1| - 0.027 14.7 2.6 0.092 13.1 0.3 2.9 2 1 1 3 3 3 0 Domain of unknown function DUF11 AAA_16 PF13191.6 gi|313125615|ref|YP_004035885.1| - 0.069 13.5 2.5 0.086 13.2 0.5 2.2 1 1 1 2 2 2 0 AAA ATPase domain Arf PF00025.21 gi|313125615|ref|YP_004035885.1| - 0.1 12.0 0.3 2.6 7.5 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family SapC PF07277.11 gi|313125615|ref|YP_004035885.1| - 0.11 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 SapC Pox_A_type_inc PF04508.12 gi|313125615|ref|YP_004035885.1| - 0.13 12.1 0.8 0.57 10.1 0.0 2.4 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DUF5518 PF17647.1 gi|313125616|ref|YP_004035886.1| - 0.0053 16.9 19.8 0.0076 16.4 19.8 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) EpuA PF11772.8 gi|313125616|ref|YP_004035886.1| - 0.29 10.9 8.0 2.9 7.6 2.4 2.7 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta 7TM-7TMR_HD PF07698.11 gi|313125616|ref|YP_004035886.1| - 0.64 9.8 9.9 2.2 8.0 9.9 1.8 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF872 PF05915.12 gi|313125616|ref|YP_004035886.1| - 0.82 9.8 4.7 0.19 11.9 0.9 1.8 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF1269 PF06897.12 gi|313125616|ref|YP_004035886.1| - 5.1 7.5 11.6 2.8 8.3 6.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) GTP_EFTU PF00009.27 gi|313125617|ref|YP_004035887.1| - 4.4e-57 192.8 0.0 5.2e-57 192.5 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|313125617|ref|YP_004035887.1| - 7.7e-37 126.0 0.0 2.9e-36 124.2 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|313125617|ref|YP_004035887.1| - 1.9e-16 60.2 1.8 9.2e-16 58.0 0.6 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|313125617|ref|YP_004035887.1| - 2.8e-08 33.9 0.2 4.3e-07 30.0 0.2 2.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313125617|ref|YP_004035887.1| - 0.00072 19.5 2.0 0.041 13.8 0.2 2.5 1 1 1 2 2 2 1 RsgA GTPase Ras PF00071.22 gi|313125617|ref|YP_004035887.1| - 0.00095 18.8 1.6 0.0037 16.9 0.7 2.1 2 1 0 2 2 2 1 Ras family GTP_EFTU_D4 PF14578.6 gi|313125617|ref|YP_004035887.1| - 0.0028 17.5 0.3 0.008 16.1 0.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Septin PF00735.18 gi|313125617|ref|YP_004035887.1| - 0.0037 16.6 0.6 0.011 15.0 0.0 1.9 2 1 0 2 2 2 1 Septin Dynamin_N PF00350.23 gi|313125617|ref|YP_004035887.1| - 0.0052 16.8 0.1 1.8 8.6 0.0 2.5 1 1 1 2 2 2 2 Dynamin family Gtr1_RagA PF04670.12 gi|313125617|ref|YP_004035887.1| - 0.012 14.9 0.1 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|313125617|ref|YP_004035887.1| - 0.023 14.2 0.6 0.41 10.2 0.4 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.10 gi|313125617|ref|YP_004035887.1| - 0.026 14.0 0.1 0.5 9.8 0.1 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|313125617|ref|YP_004035887.1| - 0.047 13.9 0.0 5.3 7.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTP_transf_3 PF12804.7 gi|313125617|ref|YP_004035887.1| - 0.064 13.6 0.0 0.16 12.3 0.0 1.6 1 1 0 1 1 1 0 MobA-like NTP transferase domain Peptidase_S8 PF00082.22 gi|313125618|ref|YP_004035888.1| - 6.4e-51 173.4 12.5 9.6e-51 172.8 12.5 1.2 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|313125618|ref|YP_004035888.1| - 0.055 13.3 0.5 0.055 13.3 0.5 2.7 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence NYN PF01936.18 gi|313125619|ref|YP_004035889.1| - 3.3e-19 69.8 0.1 4.3e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.6 gi|313125619|ref|YP_004035889.1| - 0.00012 21.8 0.1 0.00015 21.4 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain TatD_DNase PF01026.21 gi|313125620|ref|YP_004035890.1| - 3.3e-17 62.7 0.0 1.4e-15 57.4 0.0 2.0 1 1 1 2 2 2 2 TatD related DNase DUF2150 PF09920.9 gi|313125621|ref|YP_004035891.1| - 1.2e-71 240.7 6.9 1.3e-71 240.5 6.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) REJ PF02010.15 gi|313125623|ref|YP_004035893.1| - 7.5e-13 48.1 2.0 9.2e-05 21.4 0.0 3.3 2 1 1 3 3 3 3 REJ domain Pilin_N PF07790.11 gi|313125623|ref|YP_004035893.1| - 3.4e-06 27.9 2.1 0.00094 20.1 0.2 3.7 3 1 1 4 4 4 1 Archaeal Type IV pilin, N-terminal PKD PF00801.20 gi|313125623|ref|YP_004035893.1| - 0.00014 21.6 14.4 0.036 13.9 0.9 5.6 5 0 0 5 5 5 2 PKD domain Arch_flagellin PF01917.16 gi|313125623|ref|YP_004035893.1| - 2 8.6 13.9 0.74 10.0 0.2 3.5 3 1 0 3 3 3 0 Archaebacterial flagellin BiPBP_C PF06832.12 gi|313125623|ref|YP_004035893.1| - 3 8.0 5.6 47 4.1 0.4 3.6 3 1 1 4 4 4 0 Penicillin-Binding Protein C-terminus Family HMG_CoA_synt_N PF01154.17 gi|313125624|ref|YP_004035894.1| - 5.1e-25 88.3 0.0 9.3e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|313125624|ref|YP_004035894.1| - 3.6e-22 79.3 0.0 7.2e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal DUF1257 PF06868.11 gi|313125624|ref|YP_004035894.1| - 0.011 15.9 0.3 0.029 14.6 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1257) TPR_10 PF13374.6 gi|313125624|ref|YP_004035894.1| - 0.22 11.4 2.1 0.56 10.2 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat HTH_31 PF13560.6 gi|313125625|ref|YP_004035895.1| - 4.3e-10 39.8 0.1 1.6e-09 37.9 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|313125625|ref|YP_004035895.1| - 1.7e-08 34.4 0.0 4.3e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|313125625|ref|YP_004035895.1| - 1.6e-06 28.0 0.0 3.3e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313125625|ref|YP_004035895.1| - 0.01 15.7 0.1 0.4 10.6 0.0 2.7 2 0 0 2 2 2 0 HTH domain YdaS_antitoxin PF15943.5 gi|313125625|ref|YP_004035895.1| - 0.016 15.1 0.0 0.05 13.5 0.0 1.9 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 gi|313125625|ref|YP_004035895.1| - 0.034 14.6 0.0 0.23 11.9 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain YdjM PF04307.14 gi|313125626|ref|YP_004035896.1| - 4e-07 29.5 2.1 5.4e-07 29.1 2.1 1.4 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase GATase_7 PF13537.6 gi|313125626|ref|YP_004035896.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase domain UL45 PF05473.12 gi|313125626|ref|YP_004035896.1| - 0.17 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like Acetyltransf_1 PF00583.25 gi|313125627|ref|YP_004035897.1| - 1.2e-14 54.6 0.0 1.6e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313125627|ref|YP_004035897.1| - 3.2e-11 43.5 0.0 4.9e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313125627|ref|YP_004035897.1| - 7.5e-11 42.1 0.0 9.7e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313125627|ref|YP_004035897.1| - 3.1e-07 31.2 0.0 4.4e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|313125627|ref|YP_004035897.1| - 4.6e-06 26.7 0.0 9e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|313125627|ref|YP_004035897.1| - 1.4e-05 24.8 0.0 3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|313125627|ref|YP_004035897.1| - 0.00017 21.7 0.0 0.00045 20.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313125627|ref|YP_004035897.1| - 0.00097 19.3 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|313125627|ref|YP_004035897.1| - 0.0096 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase FR47 PF08445.10 gi|313125627|ref|YP_004035897.1| - 0.023 14.6 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_18 PF18014.1 gi|313125627|ref|YP_004035897.1| - 0.055 13.3 0.0 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain RseC_MucC PF04246.12 gi|313125628|ref|YP_004035898.1| - 0.15 12.0 7.4 0.09 12.7 3.4 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Acetyltransf_3 PF13302.7 gi|313125629|ref|YP_004035899.1| - 6.8e-16 59.2 0.0 9.3e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313125630|ref|YP_004035900.1| - 4e-16 59.9 0.7 7.6e-16 59.0 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Pyridox_ox_2 PF12900.7 gi|313125631|ref|YP_004035901.1| - 6.5e-21 74.8 0.2 7.5e-21 74.6 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase OrfB_Zn_ribbon PF07282.11 gi|313125632|ref|YP_004035902.1| - 6.6e-23 80.4 1.8 1.1e-21 76.5 0.6 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HMA PF00403.26 gi|313125632|ref|YP_004035902.1| - 2.5e-09 37.4 0.1 4.5e-09 36.6 0.1 1.5 1 0 0 1 1 1 1 Heavy-metal-associated domain RuvC_1 PF18516.1 gi|313125632|ref|YP_004035902.1| - 0.055 12.7 0.1 0.34 10.0 0.1 1.9 1 1 0 1 1 1 0 RuvC nuclease domain Anti-TRAP PF15777.5 gi|313125632|ref|YP_004035902.1| - 0.21 11.6 4.8 0.88 9.6 2.0 2.3 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF2752 PF10825.8 gi|313125632|ref|YP_004035902.1| - 0.29 11.2 2.8 2 8.6 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) HypA PF01155.19 gi|313125632|ref|YP_004035902.1| - 0.33 11.0 5.9 0.3 11.1 3.5 2.1 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|313125632|ref|YP_004035902.1| - 9.4 6.4 12.6 0.92 9.7 0.2 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 E1-E2_ATPase PF00122.20 gi|313125633|ref|YP_004035903.1| - 4.3e-49 166.5 0.1 4.3e-49 166.5 0.1 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|313125633|ref|YP_004035903.1| - 4.3e-44 151.3 3.8 7.9e-44 150.4 3.8 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|313125633|ref|YP_004035903.1| - 1e-06 29.1 0.6 4.4e-06 27.1 0.1 2.3 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|313125633|ref|YP_004035903.1| - 3.6e-06 26.9 0.5 9.5e-05 22.3 0.4 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313125633|ref|YP_004035903.1| - 0.069 13.6 0.2 0.53 10.7 0.1 2.5 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2721 PF11026.8 gi|313125633|ref|YP_004035903.1| - 0.083 12.8 0.0 0.083 12.8 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2721) HTH_20 PF12840.7 gi|313125634|ref|YP_004035904.1| - 4.9e-12 45.7 0.2 9.3e-12 44.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313125634|ref|YP_004035904.1| - 1.5e-09 37.6 0.2 7.3e-09 35.4 0.2 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|313125634|ref|YP_004035904.1| - 3.3e-05 23.8 1.7 4.2e-05 23.4 0.4 1.8 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain FUR PF01475.19 gi|313125634|ref|YP_004035904.1| - 0.01 15.9 0.7 0.022 14.9 0.6 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family TFIIE_alpha PF02002.17 gi|313125634|ref|YP_004035904.1| - 0.011 15.5 1.3 0.03 14.2 0.2 2.0 2 0 0 2 2 2 0 TFIIE alpha subunit PadR PF03551.14 gi|313125634|ref|YP_004035904.1| - 0.016 15.1 0.2 0.027 14.4 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family BCDHK_Adom3 PF10436.9 gi|313125634|ref|YP_004035904.1| - 0.021 14.7 0.3 0.032 14.1 0.2 1.4 1 1 0 1 1 1 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase Penicillinase_R PF03965.16 gi|313125634|ref|YP_004035904.1| - 0.037 14.4 0.5 0.15 12.5 0.0 2.1 2 1 0 2 2 2 0 Penicillinase repressor N6_Mtase PF02384.16 gi|313125635|ref|YP_004035905.1| - 5.1e-17 62.1 0.0 1.1e-16 61.0 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 gi|313125635|ref|YP_004035905.1| - 3.2e-08 34.0 0.0 6.7e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|313125635|ref|YP_004035905.1| - 5.2e-05 23.0 0.0 0.00058 19.6 0.0 2.4 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|313125635|ref|YP_004035905.1| - 7.3e-05 22.4 0.0 0.00016 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|313125635|ref|YP_004035905.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TaqI_C PF12950.7 gi|313125635|ref|YP_004035905.1| - 0.014 15.5 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 TaqI-like C-terminal specificity domain Methyltransf_25 PF13649.6 gi|313125635|ref|YP_004035905.1| - 0.036 14.8 0.0 0.12 13.1 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain VAPB_antitox PF02697.14 gi|313125636|ref|YP_004035906.1| - 1.1e-05 26.1 0.0 1.3e-05 25.9 0.0 1.1 1 0 0 1 1 1 1 Putative antitoxin IBD PF10416.9 gi|313125636|ref|YP_004035906.1| - 0.044 13.8 0.1 0.045 13.8 0.1 1.0 1 0 0 1 1 1 0 Transcription-initiator DNA-binding domain IBD RE_XamI PF09572.10 gi|313125637|ref|YP_004035907.1| - 8.1e-15 55.2 0.1 1.2e-14 54.7 0.1 1.1 1 0 0 1 1 1 1 XamI restriction endonuclease AAA PF00004.29 gi|313125638|ref|YP_004035908.1| - 7.1e-11 42.7 0.2 3.8e-10 40.3 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|313125638|ref|YP_004035908.1| - 6e-06 26.1 0.9 1.2e-05 25.1 0.9 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|313125638|ref|YP_004035908.1| - 1.6e-05 24.7 0.0 2.9e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|313125638|ref|YP_004035908.1| - 0.00017 21.9 0.0 0.00092 19.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|313125638|ref|YP_004035908.1| - 0.00033 21.2 0.1 0.052 14.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313125638|ref|YP_004035908.1| - 0.00053 20.4 0.1 0.0014 19.0 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|313125638|ref|YP_004035908.1| - 0.00059 20.1 0.0 0.0018 18.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|313125638|ref|YP_004035908.1| - 0.0032 17.8 2.4 0.0042 17.4 0.2 2.4 3 0 0 3 3 2 1 AAA C-terminal domain AAA_33 PF13671.6 gi|313125638|ref|YP_004035908.1| - 0.0033 17.6 0.1 0.017 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|313125638|ref|YP_004035908.1| - 0.0067 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|313125638|ref|YP_004035908.1| - 0.0091 16.0 0.0 0.025 14.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|313125638|ref|YP_004035908.1| - 0.012 14.9 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|313125638|ref|YP_004035908.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313125638|ref|YP_004035908.1| - 0.015 14.9 0.6 0.46 10.0 0.1 2.7 1 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|313125638|ref|YP_004035908.1| - 0.015 15.2 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|313125638|ref|YP_004035908.1| - 0.02 15.3 0.0 0.05 14.0 0.0 1.8 1 1 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.18 gi|313125638|ref|YP_004035908.1| - 0.021 14.6 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|313125638|ref|YP_004035908.1| - 0.024 14.6 0.0 0.29 11.0 0.0 2.2 2 0 0 2 2 2 0 NACHT domain Hydin_ADK PF17213.3 gi|313125638|ref|YP_004035908.1| - 0.038 14.3 0.1 0.085 13.1 0.1 1.6 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain RsgA_GTPase PF03193.16 gi|313125638|ref|YP_004035908.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_3 PF07726.11 gi|313125638|ref|YP_004035908.1| - 0.18 11.6 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|313125639|ref|YP_004035909.1| - 6.4e-35 120.7 0.0 8.1e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313125639|ref|YP_004035909.1| - 3e-10 40.4 0.0 0.00015 21.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313125639|ref|YP_004035909.1| - 5.4e-09 35.8 0.0 2.3e-05 23.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313125639|ref|YP_004035909.1| - 3.9e-05 24.1 0.1 6e-05 23.5 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|313125639|ref|YP_004035909.1| - 0.00012 21.7 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|313125639|ref|YP_004035909.1| - 0.00044 20.0 0.0 0.0007 19.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313125639|ref|YP_004035909.1| - 0.00073 19.8 0.1 0.0023 18.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|313125639|ref|YP_004035909.1| - 0.0018 17.1 0.0 1.8 7.3 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|313125639|ref|YP_004035909.1| - 0.0022 17.9 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase CSD2 PF17876.1 gi|313125639|ref|YP_004035909.1| - 0.013 15.6 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Cold shock domain ATPase_2 PF01637.18 gi|313125639|ref|YP_004035909.1| - 0.015 15.2 0.0 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|313125639|ref|YP_004035909.1| - 0.018 15.6 0.0 0.028 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313125639|ref|YP_004035909.1| - 0.023 14.9 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313125639|ref|YP_004035909.1| - 0.04 14.3 0.4 1 9.8 0.1 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|313125639|ref|YP_004035909.1| - 0.044 13.0 0.0 0.2 10.8 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_27 PF13514.6 gi|313125639|ref|YP_004035909.1| - 0.055 13.1 0.1 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|313125639|ref|YP_004035909.1| - 0.059 13.1 0.0 0.1 12.3 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|313125639|ref|YP_004035909.1| - 0.066 12.8 0.0 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|313125639|ref|YP_004035909.1| - 0.071 13.1 0.1 4 7.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|313125639|ref|YP_004035909.1| - 0.08 12.8 0.0 0.19 11.6 0.0 1.6 1 1 1 2 2 2 0 Rad17 P-loop domain T2SSE PF00437.20 gi|313125639|ref|YP_004035909.1| - 0.082 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|313125639|ref|YP_004035909.1| - 0.11 13.0 0.0 0.2 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|313125639|ref|YP_004035909.1| - 0.13 11.9 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|313125639|ref|YP_004035909.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|313125639|ref|YP_004035909.1| - 0.15 11.5 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 gi|313125639|ref|YP_004035909.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|313125639|ref|YP_004035909.1| - 0.16 12.2 0.3 2.4 8.5 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.15 gi|313125639|ref|YP_004035909.1| - 0.17 10.7 0.0 0.53 9.0 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_24 PF13479.6 gi|313125639|ref|YP_004035909.1| - 0.21 11.3 0.0 0.36 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|313125640|ref|YP_004035910.1| - 8.2e-20 71.3 3.8 8.2e-20 71.3 3.8 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|313125641|ref|YP_004035911.1| - 1.1e-66 224.5 1.5 1.3e-66 224.3 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|313125641|ref|YP_004035911.1| - 5.7e-08 33.0 0.6 7.7e-07 29.3 0.3 2.6 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|313125641|ref|YP_004035911.1| - 1.1e-05 25.5 0.2 1.7e-05 24.9 0.2 1.3 1 0 0 1 1 1 1 NMT1/THI5 like TAT_signal PF10518.9 gi|313125641|ref|YP_004035911.1| - 0.00013 21.7 0.5 0.00013 21.7 0.5 2.3 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_3 PF16868.5 gi|313125641|ref|YP_004035911.1| - 0.011 15.1 0.1 0.015 14.7 0.1 1.3 1 0 0 1 1 1 0 NMT1-like family OpuAC PF04069.12 gi|313125641|ref|YP_004035911.1| - 0.029 14.0 0.0 1.5 8.4 0.0 2.1 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system COX15-CtaA PF02628.15 gi|313125643|ref|YP_004035913.1| - 2.7e-10 39.8 30.4 5.3e-10 38.9 13.8 2.9 1 1 2 3 3 3 2 Cytochrome oxidase assembly protein Peptidase_M24 PF00557.24 gi|313125644|ref|YP_004035914.1| - 1.2e-10 41.5 0.1 1.6e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|313125644|ref|YP_004035914.1| - 5.8e-06 27.0 0.0 1.4e-05 25.8 0.0 1.7 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain NUDIX_5 PF16705.5 gi|313125644|ref|YP_004035914.1| - 0.088 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 NUDIX, or N-terminal NPxY motif-rich, region of KRIT PTA_PTB PF01515.19 gi|313125645|ref|YP_004035915.1| - 1.1e-97 327.3 0.0 1.7e-97 326.6 0.0 1.3 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|313125645|ref|YP_004035915.1| - 2.3e-30 105.8 0.0 4.4e-28 98.3 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|313125645|ref|YP_004035915.1| - 1.1e-22 80.6 0.2 2.9e-22 79.2 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF3798 PF12683.7 gi|313125645|ref|YP_004035915.1| - 0.089 12.2 0.1 2.8 7.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3798) TatC PF00902.18 gi|313125646|ref|YP_004035916.1| - 7.8e-10 38.9 13.3 8.2e-10 38.9 8.7 2.1 1 1 0 2 2 2 2 Sec-independent protein translocase protein (TatC) TauE PF01925.19 gi|313125647|ref|YP_004035917.1| - 1.2e-05 25.1 7.9 1.4e-05 24.8 7.9 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE OrfB_IS605 PF01385.19 gi|313125648|ref|YP_004035918.1| - 3.5e-22 78.9 0.0 7.6e-22 77.8 0.0 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313125648|ref|YP_004035918.1| - 5.2e-22 77.6 0.8 1.3e-21 76.3 0.8 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|313125648|ref|YP_004035918.1| - 0.0012 19.1 0.6 0.003 17.8 0.6 1.6 1 0 0 1 1 1 1 C1 domain zf-ACC PF17848.1 gi|313125648|ref|YP_004035918.1| - 0.091 12.9 2.2 0.19 11.8 2.2 1.6 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L37ae PF01780.19 gi|313125648|ref|YP_004035918.1| - 0.1 12.7 0.3 0.23 11.6 0.3 1.5 1 0 0 1 1 1 0 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.12 gi|313125648|ref|YP_004035918.1| - 0.19 11.2 1.9 0.46 10.0 1.9 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|313125648|ref|YP_004035918.1| - 0.24 11.2 1.6 0.53 10.1 1.6 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313125648|ref|YP_004035918.1| - 0.24 11.4 1.1 0.6 10.1 1.1 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4298 PF14131.6 gi|313125648|ref|YP_004035918.1| - 4.8 7.2 5.0 0.93 9.5 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4298) RVT_3 PF13456.6 gi|313125649|ref|YP_004035919.1| - 0.00019 21.2 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|313125649|ref|YP_004035919.1| - 0.021 15.0 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 RNase H CBS PF00571.28 gi|313125650|ref|YP_004035920.1| - 2.7e-30 104.6 9.4 1.4e-15 57.4 0.7 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.16 gi|313125650|ref|YP_004035920.1| - 0.23 11.6 4.0 0.56 10.3 0.2 2.5 2 2 0 2 2 2 0 PRC-barrel domain EamA PF00892.20 gi|313125651|ref|YP_004035921.1| - 1.5e-34 119.1 30.8 2.4e-21 76.4 14.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family 7TMR-DISM_7TM PF07695.11 gi|313125651|ref|YP_004035921.1| - 1.2 9.0 23.9 5.6 6.8 5.6 3.5 1 1 2 3 3 3 0 7TM diverse intracellular signalling RRP7 PF12923.7 gi|313125652|ref|YP_004035922.1| - 0.098 12.8 0.4 0.17 12.0 0.4 1.5 1 1 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain DUF1344 PF07076.11 gi|313125652|ref|YP_004035922.1| - 0.12 12.4 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) OstA PF03968.14 gi|313125652|ref|YP_004035922.1| - 0.12 12.5 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 OstA-like protein AAA_18 PF13238.6 gi|313125653|ref|YP_004035923.1| - 3.8e-21 76.0 0.0 5.1e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|313125653|ref|YP_004035923.1| - 2.6e-18 66.8 0.1 3e-17 63.3 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|313125653|ref|YP_004035923.1| - 7.7e-11 42.6 0.0 1.8e-10 41.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|313125653|ref|YP_004035923.1| - 2.2e-08 34.1 0.4 0.00039 20.2 0.2 2.2 1 1 1 2 2 2 2 Cytidylate kinase AAA PF00004.29 gi|313125653|ref|YP_004035923.1| - 3.2e-05 24.4 0.0 5.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|313125653|ref|YP_004035923.1| - 4e-05 23.9 0.2 8.7e-05 22.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313125653|ref|YP_004035923.1| - 5.4e-05 23.4 0.1 0.00012 22.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|313125653|ref|YP_004035923.1| - 0.00038 20.6 0.0 0.0011 19.2 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase SKI PF01202.22 gi|313125653|ref|YP_004035923.1| - 0.0029 17.7 0.3 0.026 14.7 0.3 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_16 PF13191.6 gi|313125653|ref|YP_004035923.1| - 0.0037 17.7 0.2 0.008 16.6 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain RHH_4 PF13467.6 gi|313125653|ref|YP_004035923.1| - 0.024 14.5 0.2 0.044 13.7 0.2 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix domain Rad17 PF03215.15 gi|313125653|ref|YP_004035923.1| - 0.038 13.9 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|313125653|ref|YP_004035923.1| - 0.1 12.9 0.2 0.21 11.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|313125653|ref|YP_004035923.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|313125653|ref|YP_004035923.1| - 0.18 10.9 0.0 0.3 10.2 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain Asparaginase PF00710.20 gi|313125654|ref|YP_004035924.1| - 1.4e-51 174.8 0.0 2.2e-51 174.1 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|313125654|ref|YP_004035924.1| - 6.6e-19 68.2 2.5 1.9e-18 66.7 0.3 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain mRNA_cap_enzyme PF01331.19 gi|313125655|ref|YP_004035925.1| - 0.083 12.7 0.3 0.094 12.5 0.3 1.0 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain Aldo_ket_red PF00248.21 gi|313125656|ref|YP_004035926.1| - 5.6e-79 265.4 0.0 6.3e-79 265.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF1684 PF07920.11 gi|313125657|ref|YP_004035927.1| - 1.8e-51 174.1 0.1 2.3e-51 173.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) DUF2583 PF10762.9 gi|313125658|ref|YP_004035928.1| - 1.2 9.6 3.4 2.5 8.6 3.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2583) Pilin_N PF07790.11 gi|313125659|ref|YP_004035929.1| - 3.3e-24 85.6 5.2 3.9e-24 85.4 2.3 2.0 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|313125660|ref|YP_004035930.1| - 2.1e-24 86.3 3.1 5.3e-24 85.0 1.9 1.9 1 1 0 2 2 2 1 Archaeal Type IV pilin, N-terminal PKD PF00801.20 gi|313125660|ref|YP_004035930.1| - 0.0083 16.0 5.2 0.51 10.2 0.2 2.1 2 0 0 2 2 2 2 PKD domain PGF-CTERM PF18204.1 gi|313125661|ref|YP_004035931.1| - 1.3e-07 31.4 7.1 2.4e-07 30.5 7.1 1.5 1 0 0 1 1 1 1 PGF-CTERM motif MG2 PF01835.19 gi|313125661|ref|YP_004035931.1| - 0.068 13.6 6.4 1.3 9.6 0.0 4.8 5 1 0 5 5 5 0 MG2 domain DUF4129 PF13559.6 gi|313125662|ref|YP_004035932.1| - 6e-11 42.4 3.6 1.1e-10 41.6 3.6 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Trp_oprn_chp PF09534.10 gi|313125662|ref|YP_004035932.1| - 0.018 14.8 0.9 0.018 14.8 0.9 2.3 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3185 PF11381.8 gi|313125662|ref|YP_004035932.1| - 0.028 14.5 0.0 0.08 13.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) ATP1G1_PLM_MAT8 PF02038.16 gi|313125662|ref|YP_004035932.1| - 0.59 9.6 1.6 1.1 8.7 1.6 1.4 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF58 PF01882.18 gi|313125663|ref|YP_004035933.1| - 2.9e-17 62.7 0.0 6e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|313125663|ref|YP_004035933.1| - 2.1e-07 31.1 1.7 2.1e-07 31.1 1.7 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|313125663|ref|YP_004035933.1| - 0.014 15.6 0.4 0.047 14.0 0.4 1.9 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase MerC PF03203.14 gi|313125664|ref|YP_004035934.1| - 4.5 7.8 16.9 6.3 7.3 2.6 2.5 2 1 0 2 2 2 0 MerC mercury resistance protein DUF4395 PF14340.6 gi|313125664|ref|YP_004035934.1| - 6.4 7.1 21.7 0.13 12.6 7.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4395) MCLC PF05934.11 gi|313125666|ref|YP_004035936.1| - 0.55 8.9 3.1 0.68 8.6 3.1 1.1 1 0 0 1 1 1 0 Mid-1-related chloride channel (MCLC) SNARE_assoc PF09335.11 gi|313125668|ref|YP_004035938.1| - 8.5e-11 42.4 8.5 8.5e-11 42.4 8.5 2.0 3 0 0 3 3 3 1 SNARE associated Golgi protein Wzy_C PF04932.15 gi|313125668|ref|YP_004035938.1| - 4.3 6.9 8.3 13 5.4 7.9 2.1 2 1 0 2 2 2 0 O-Antigen ligase iPGM_N PF06415.13 gi|313125669|ref|YP_004035939.1| - 3.2e-80 268.6 0.1 4.3e-80 268.2 0.1 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|313125669|ref|YP_004035939.1| - 1.8e-72 243.7 0.1 2.1e-72 243.5 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|313125669|ref|YP_004035939.1| - 5.3e-07 29.5 0.1 5.3e-06 26.3 0.1 2.3 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|313125669|ref|YP_004035939.1| - 1.3e-06 28.1 0.1 2e-05 24.2 0.0 2.7 3 1 0 3 3 3 1 Sulfatase PglZ PF08665.12 gi|313125669|ref|YP_004035939.1| - 0.019 15.1 0.2 0.039 14.0 0.2 1.4 1 0 0 1 1 1 0 PglZ domain PGM_PMM_II PF02879.16 gi|313125669|ref|YP_004035939.1| - 1.2 9.8 4.4 25 5.6 0.5 3.6 3 1 1 4 4 4 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF1405 PF07187.11 gi|313125670|ref|YP_004035940.1| - 4.4e-35 121.0 9.5 6e-35 120.6 9.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HTH_5 PF01022.20 gi|313125671|ref|YP_004035941.1| - 5.2e-19 67.8 0.9 4.7e-16 58.4 0.1 2.8 3 1 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313125671|ref|YP_004035941.1| - 2.8e-16 59.3 6.5 4e-13 49.2 0.1 3.1 2 1 1 3 3 3 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|313125671|ref|YP_004035941.1| - 8e-16 57.7 5.3 5.7e-09 35.7 0.1 3.2 3 1 0 3 3 3 2 MarR family TrmB PF01978.19 gi|313125671|ref|YP_004035941.1| - 4.7e-13 48.8 0.0 4e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313125671|ref|YP_004035941.1| - 7.1e-13 48.3 0.4 1.3e-07 31.4 0.1 2.8 3 0 0 3 3 2 2 MarR family HTH_Crp_2 PF13545.6 gi|313125671|ref|YP_004035941.1| - 1.5e-09 37.7 0.4 8.7e-05 22.4 0.1 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|313125671|ref|YP_004035941.1| - 1.7e-09 37.1 2.6 3.1e-06 26.6 0.2 3.6 3 1 0 3 3 3 2 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|313125671|ref|YP_004035941.1| - 1.7e-09 37.7 0.0 0.0002 21.5 0.0 2.3 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|313125671|ref|YP_004035941.1| - 4.6e-08 33.4 0.2 0.0009 19.7 0.1 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|313125671|ref|YP_004035941.1| - 5e-07 30.0 0.0 0.0045 17.3 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|313125671|ref|YP_004035941.1| - 9e-07 28.6 0.1 0.018 14.8 0.0 2.7 2 0 0 2 2 2 2 LexA DNA binding domain DUF4423 PF14394.6 gi|313125671|ref|YP_004035941.1| - 1.5e-06 28.0 0.0 0.0035 17.1 0.0 2.5 3 0 0 3 3 2 2 Domain of unknown function (DUF4423) DprA_WH PF17782.1 gi|313125671|ref|YP_004035941.1| - 4.1e-06 26.8 3.2 0.00018 21.6 0.0 2.9 3 1 0 3 3 2 1 DprA winged helix domain HTH_11 PF08279.12 gi|313125671|ref|YP_004035941.1| - 1e-05 25.3 0.5 6.8e-05 22.7 0.0 2.4 3 0 0 3 3 2 1 HTH domain PadR PF03551.14 gi|313125671|ref|YP_004035941.1| - 1.5e-05 24.8 0.3 0.0026 17.7 0.1 3.6 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family GntR PF00392.21 gi|313125671|ref|YP_004035941.1| - 2e-05 24.1 0.1 0.14 11.8 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|313125671|ref|YP_004035941.1| - 6.2e-05 22.7 0.0 0.012 15.4 0.0 3.2 3 0 0 3 3 3 1 HTH DNA binding domain DUF2250 PF10007.9 gi|313125671|ref|YP_004035941.1| - 7.4e-05 22.8 0.0 0.062 13.4 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.27 gi|313125671|ref|YP_004035941.1| - 0.00011 22.1 0.9 0.85 9.6 0.3 3.0 3 1 1 4 4 2 2 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|313125671|ref|YP_004035941.1| - 0.00014 21.3 0.0 0.00027 20.4 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_28 PF13518.6 gi|313125671|ref|YP_004035941.1| - 0.00014 21.9 3.4 0.019 15.1 0.2 2.8 3 0 0 3 3 2 1 Helix-turn-helix domain RP-C PF03428.13 gi|313125671|ref|YP_004035941.1| - 0.00021 21.0 0.0 0.07 12.8 0.0 2.4 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_29 PF13551.6 gi|313125671|ref|YP_004035941.1| - 0.00047 20.1 0.4 1.3 9.1 0.1 2.5 2 0 0 2 2 2 2 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|313125671|ref|YP_004035941.1| - 0.00049 19.9 2.5 0.16 11.8 0.0 3.7 3 1 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|313125671|ref|YP_004035941.1| - 0.00055 19.8 0.0 0.053 13.5 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_47 PF16221.5 gi|313125671|ref|YP_004035941.1| - 0.00057 19.4 0.0 0.37 10.4 0.0 2.4 2 0 0 2 2 2 1 winged helix-turn-helix HTH_23 PF13384.6 gi|313125671|ref|YP_004035941.1| - 0.0015 18.3 0.3 2.8 7.9 0.1 2.8 2 1 0 2 2 2 2 Homeodomain-like domain HemN_C PF06969.16 gi|313125671|ref|YP_004035941.1| - 0.002 18.1 0.0 1.5 9.0 0.0 3.1 3 0 0 3 3 3 1 HemN C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|313125671|ref|YP_004035941.1| - 0.0033 16.8 0.0 1.5 8.3 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 AbiEi_4 PF13338.6 gi|313125671|ref|YP_004035941.1| - 0.0041 17.2 0.2 2.8 8.2 0.0 2.7 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin DDRGK PF09756.9 gi|313125671|ref|YP_004035941.1| - 0.0045 16.6 0.0 0.0093 15.6 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain ArsR PF09824.9 gi|313125671|ref|YP_004035941.1| - 0.0065 16.1 0.0 0.17 11.5 0.0 2.2 2 0 0 2 2 2 1 ArsR transcriptional regulator Sigma70_r4_2 PF08281.12 gi|313125671|ref|YP_004035941.1| - 0.0067 16.1 0.1 1.2 8.8 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 DUF2089 PF09862.9 gi|313125671|ref|YP_004035941.1| - 0.01 15.9 0.0 0.05 13.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) PaaX PF07848.12 gi|313125671|ref|YP_004035941.1| - 0.012 15.8 0.1 0.55 10.5 0.1 2.4 2 0 0 2 2 2 0 PaaX-like protein TFIIE_alpha PF02002.17 gi|313125671|ref|YP_004035941.1| - 0.014 15.2 0.1 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_DeoR PF08220.12 gi|313125671|ref|YP_004035941.1| - 0.018 14.8 0.2 0.17 11.6 0.0 2.4 3 0 0 3 3 2 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|313125671|ref|YP_004035941.1| - 0.018 15.2 0.0 0.71 10.1 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC RPA_C PF08784.11 gi|313125671|ref|YP_004035941.1| - 0.02 15.6 0.0 3.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal Cdc6_C PF09079.11 gi|313125671|ref|YP_004035941.1| - 0.02 14.8 0.1 0.18 11.8 0.0 2.4 3 0 0 3 3 2 0 CDC6, C terminal winged helix domain DUF2513 PF10711.9 gi|313125671|ref|YP_004035941.1| - 0.025 14.9 0.0 0.33 11.3 0.0 2.1 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) MerR PF00376.23 gi|313125671|ref|YP_004035941.1| - 0.029 14.1 0.5 0.73 9.7 0.1 3.0 2 1 0 2 2 2 0 MerR family regulatory protein HxlR PF01638.17 gi|313125671|ref|YP_004035941.1| - 0.037 13.9 0.0 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Sulfolobus_pRN PF05584.11 gi|313125671|ref|YP_004035941.1| - 0.039 14.0 0.1 9.8 6.3 0.0 3.0 2 1 1 3 3 3 0 Sulfolobus plasmid regulatory protein IF2_N PF04760.15 gi|313125671|ref|YP_004035941.1| - 0.039 13.8 0.1 1.5 8.7 0.0 3.0 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_IclR PF09339.10 gi|313125671|ref|YP_004035941.1| - 0.049 13.5 6.0 0.31 10.9 0.1 3.4 4 0 0 4 4 3 0 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|313125671|ref|YP_004035941.1| - 0.05 13.9 0.0 6.1 7.2 0.0 2.5 3 0 0 3 3 2 0 Penicillinase repressor GerE PF00196.19 gi|313125671|ref|YP_004035941.1| - 0.059 12.9 0.0 14 5.3 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family FeoC PF09012.10 gi|313125671|ref|YP_004035941.1| - 0.064 13.3 0.0 15 5.8 0.0 2.5 3 0 0 3 3 2 0 FeoC like transcriptional regulator BLACT_WH PF17778.1 gi|313125671|ref|YP_004035941.1| - 0.1 12.6 4.1 0.64 10.1 0.1 2.8 3 0 0 3 3 2 0 Beta-lactamase associated winged helix domain DUF3572 PF12096.8 gi|313125671|ref|YP_004035941.1| - 0.11 12.8 0.1 0.53 10.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3572) TnsD PF15978.5 gi|313125671|ref|YP_004035941.1| - 0.11 11.4 0.0 0.22 10.5 0.0 1.4 2 0 0 2 2 2 0 Tn7-like transposition protein D FaeA PF04703.12 gi|313125671|ref|YP_004035941.1| - 0.18 12.2 0.0 0.38 11.2 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_40 PF14493.6 gi|313125671|ref|YP_004035941.1| - 0.18 12.3 0.1 5.9 7.4 0.0 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain DUF3792 PF12670.7 gi|313125672|ref|YP_004035942.1| - 1.9 8.7 18.1 3.7 7.8 18.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3792) Asparaginase PF00710.20 gi|313125673|ref|YP_004035943.1| - 1.5e-58 197.6 0.9 2.5e-58 196.8 0.7 1.5 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|313125673|ref|YP_004035943.1| - 1.7e-25 89.5 0.0 9.3e-25 87.1 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|313125673|ref|YP_004035943.1| - 1.4e-15 56.3 0.1 2.5e-15 55.5 0.1 1.4 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|313125673|ref|YP_004035943.1| - 0.058 13.0 0.0 0.089 12.4 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain Acetyltransf_3 PF13302.7 gi|313125674|ref|YP_004035944.1| - 8e-06 26.6 2.3 9.2e-06 26.4 0.0 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313125674|ref|YP_004035944.1| - 9.8e-06 25.8 0.0 2.4e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|313125674|ref|YP_004035944.1| - 9.6e-05 22.4 0.0 0.00023 21.2 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|313125674|ref|YP_004035944.1| - 0.00049 20.5 0.0 0.00094 19.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|313125674|ref|YP_004035944.1| - 0.0056 16.8 0.0 0.035 14.2 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain HATPase_c PF02518.26 gi|313125675|ref|YP_004035945.1| - 3e-10 40.6 0.0 5.2e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313125675|ref|YP_004035945.1| - 2.5e-08 34.2 0.7 6.8e-08 32.7 0.1 2.0 2 0 0 2 2 2 1 PAS fold CPSase_sm_chain PF00988.22 gi|313125676|ref|YP_004035946.1| - 7e-38 129.3 0.0 3.6e-37 127.0 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|313125676|ref|YP_004035946.1| - 1.8e-37 129.0 0.0 2.5e-37 128.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313125676|ref|YP_004035946.1| - 4.4e-05 23.3 0.8 0.011 15.5 0.3 2.3 1 1 1 2 2 2 2 Peptidase C26 HTH_AsnC-type PF13404.6 gi|313125677|ref|YP_004035947.1| - 5.4e-18 64.5 0.8 5.4e-18 64.5 0.8 1.8 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|313125677|ref|YP_004035947.1| - 8.2e-16 57.3 0.2 1.6e-15 56.4 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|313125677|ref|YP_004035947.1| - 6.9e-11 42.0 1.3 1.3e-10 41.1 1.3 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Sigma70_r4_2 PF08281.12 gi|313125677|ref|YP_004035947.1| - 2.1e-05 24.1 0.1 8.6e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|313125677|ref|YP_004035947.1| - 0.00018 21.5 0.0 0.00037 20.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313125677|ref|YP_004035947.1| - 0.00043 19.6 0.2 0.001 18.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 gi|313125677|ref|YP_004035947.1| - 0.00055 19.4 0.2 0.0011 18.4 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|313125677|ref|YP_004035947.1| - 0.00079 19.1 0.3 0.0016 18.1 0.3 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|313125677|ref|YP_004035947.1| - 0.001 18.8 0.0 0.0021 17.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|313125677|ref|YP_004035947.1| - 0.0017 18.2 0.1 0.0031 17.4 0.1 1.6 1 0 0 1 1 1 1 HTH domain NapD PF03927.13 gi|313125677|ref|YP_004035947.1| - 0.0029 17.6 1.4 0.0053 16.8 1.4 1.5 1 0 0 1 1 1 1 NapD protein HrcA_DNA-bdg PF03444.15 gi|313125677|ref|YP_004035947.1| - 0.0047 16.5 0.1 0.021 14.5 0.1 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Mga PF08280.11 gi|313125677|ref|YP_004035947.1| - 0.0074 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.6 gi|313125677|ref|YP_004035947.1| - 0.01 15.6 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|313125677|ref|YP_004035947.1| - 0.011 15.7 0.0 0.029 14.3 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF746 PF05344.11 gi|313125677|ref|YP_004035947.1| - 0.016 15.0 0.0 0.097 12.5 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_38 PF13936.6 gi|313125677|ref|YP_004035947.1| - 0.016 14.9 0.6 0.039 13.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|313125677|ref|YP_004035947.1| - 0.021 14.7 0.2 0.046 13.6 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.6 gi|313125677|ref|YP_004035947.1| - 0.022 14.9 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Saf-Nte_pilin PF09460.10 gi|313125677|ref|YP_004035947.1| - 0.032 14.2 0.6 0.04 13.9 0.6 1.1 1 0 0 1 1 1 0 Saf-pilin pilus formation protein GYD PF08734.11 gi|313125677|ref|YP_004035947.1| - 0.034 14.1 0.8 0.09 12.7 0.2 1.9 2 1 0 2 2 2 0 GYD domain DUF4191 PF13829.6 gi|313125677|ref|YP_004035947.1| - 0.048 13.0 0.4 0.17 11.2 0.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) GntR PF00392.21 gi|313125677|ref|YP_004035947.1| - 0.049 13.3 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family GerE PF00196.19 gi|313125677|ref|YP_004035947.1| - 0.051 13.1 0.1 0.24 11.0 0.0 2.1 2 1 1 3 3 3 0 Bacterial regulatory proteins, luxR family MIase PF02426.16 gi|313125677|ref|YP_004035947.1| - 0.14 12.3 0.2 0.25 11.5 0.2 1.5 1 1 0 1 1 1 0 Muconolactone delta-isomerase TrmB PF01978.19 gi|313125677|ref|YP_004035947.1| - 0.14 12.0 0.1 0.79 9.7 0.1 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|313125677|ref|YP_004035947.1| - 0.16 12.4 0.1 0.88 10.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein NUDIX PF00293.28 gi|313125678|ref|YP_004035948.1| - 2.7e-15 56.6 1.0 3.8e-15 56.1 1.0 1.2 1 0 0 1 1 1 1 NUDIX domain Prok-JAB PF14464.6 gi|313125679|ref|YP_004035949.1| - 1.3e-15 57.2 0.2 2.3e-15 56.4 0.2 1.4 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|313125679|ref|YP_004035949.1| - 7.8e-07 29.1 0.0 1.7e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease UPF0172 PF03665.13 gi|313125679|ref|YP_004035949.1| - 0.088 12.9 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0172) adh_short PF00106.25 gi|313125680|ref|YP_004035950.1| - 3.3e-40 137.6 0.0 4.5e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313125680|ref|YP_004035950.1| - 1.1e-35 123.3 0.0 1.6e-35 122.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|313125680|ref|YP_004035950.1| - 8.6e-06 25.4 0.0 1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|313125680|ref|YP_004035950.1| - 0.0023 17.9 0.4 0.032 14.2 0.4 2.0 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|313125680|ref|YP_004035950.1| - 0.0027 17.6 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|313125680|ref|YP_004035950.1| - 0.02 14.0 0.1 0.022 13.9 0.1 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain DFP PF04127.15 gi|313125680|ref|YP_004035950.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Aminotran_5 PF00266.19 gi|313125681|ref|YP_004035951.1| - 8.3e-25 87.5 0.0 1.1e-24 87.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|313125681|ref|YP_004035951.1| - 0.00068 18.3 0.0 0.00091 17.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF1651 PF07864.11 gi|313125681|ref|YP_004035951.1| - 0.0067 16.8 0.6 0.38 11.1 0.8 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1651) STT3_PglB_C PF18527.1 gi|313125682|ref|YP_004035952.1| - 0.01 15.9 0.9 5.6 7.2 0.1 2.8 2 1 1 3 3 3 0 STT3/PglB C-terminal beta-barrel domain PepSY_like PF11396.8 gi|313125682|ref|YP_004035952.1| - 1.3 9.6 8.7 0.82 10.3 1.4 3.1 2 1 1 3 3 3 0 Putative beta-lactamase-inhibitor-like, PepSY-like AIRS_C PF02769.22 gi|313125683|ref|YP_004035953.1| - 3.4e-20 72.7 1.0 4.9e-20 72.2 1.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|313125683|ref|YP_004035953.1| - 5.8e-06 26.9 1.6 7.5e-06 26.5 0.2 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Abhydrolase_1 PF00561.20 gi|313125684|ref|YP_004035954.1| - 2.5e-27 96.2 0.7 2.2e-26 93.0 0.7 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313125684|ref|YP_004035954.1| - 1e-18 68.8 12.0 1.2e-18 68.5 12.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313125684|ref|YP_004035954.1| - 6.8e-11 41.9 0.0 1.7e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|313125684|ref|YP_004035954.1| - 0.005 15.6 0.0 0.049 12.3 0.0 2.0 1 1 0 1 1 1 1 Ndr family Transp_inhibit PF18791.1 gi|313125684|ref|YP_004035954.1| - 0.064 12.8 2.1 0.11 12.0 0.4 2.3 2 0 0 2 2 2 0 Transport inhibitor response 1 protein domain AA_permease_2 PF13520.6 gi|313125685|ref|YP_004035955.1| - 1.8e-46 158.9 46.7 2.3e-46 158.5 46.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|313125685|ref|YP_004035955.1| - 4.2e-33 114.7 43.7 5.9e-33 114.2 43.7 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|313125685|ref|YP_004035955.1| - 1.6e-20 74.0 7.9 2.1e-10 41.2 0.2 3.5 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|313125685|ref|YP_004035955.1| - 1.3e-10 40.6 15.7 1.3e-10 40.6 15.7 2.1 1 1 1 2 2 2 1 Spore germination protein DUF4398 PF14346.6 gi|313125685|ref|YP_004035955.1| - 0.29 11.8 1.7 0.7 10.6 1.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) Usp PF00582.26 gi|313125686|ref|YP_004035956.1| - 2.1e-08 34.8 0.0 2.6e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2382 PF09557.10 gi|313125687|ref|YP_004035957.1| - 0.1 12.9 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2382) ADK PF00406.22 gi|313125688|ref|YP_004035958.1| - 1.7e-42 145.0 0.0 2.1e-42 144.8 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|313125688|ref|YP_004035958.1| - 1.4e-22 80.6 0.1 3.1e-22 79.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|313125688|ref|YP_004035958.1| - 1.5e-17 63.2 2.4 1.5e-17 63.2 2.4 1.8 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|313125688|ref|YP_004035958.1| - 1.3e-09 38.7 0.0 2.2e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313125688|ref|YP_004035958.1| - 6.7e-07 29.6 0.0 1.3e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain SKI PF01202.22 gi|313125688|ref|YP_004035958.1| - 0.003 17.7 0.3 0.017 15.2 0.1 2.1 2 1 0 2 2 1 1 Shikimate kinase RuvB_N PF05496.12 gi|313125688|ref|YP_004035958.1| - 0.0037 17.0 0.0 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain PAS_7 PF12860.7 gi|313125688|ref|YP_004035958.1| - 0.0054 16.9 0.1 0.012 15.8 0.1 1.5 1 0 0 1 1 1 1 PAS fold zf-IS66 PF13005.7 gi|313125688|ref|YP_004035958.1| - 0.021 15.2 0.7 0.96 9.9 0.1 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 dNK PF01712.19 gi|313125688|ref|YP_004035958.1| - 0.035 13.9 0.1 3.3 7.5 0.0 2.4 2 1 1 3 3 3 0 Deoxynucleoside kinase PduV-EutP PF10662.9 gi|313125688|ref|YP_004035958.1| - 0.055 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Ploopntkinase3 PF18751.1 gi|313125688|ref|YP_004035958.1| - 0.061 13.2 0.0 0.14 12.1 0.0 1.7 2 1 0 2 2 2 0 P-loop Nucleotide Kinase3 HypA PF01155.19 gi|313125688|ref|YP_004035958.1| - 0.063 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thymidylate_kin PF02223.17 gi|313125688|ref|YP_004035958.1| - 0.076 12.7 0.3 6.8 6.3 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase AAA_5 PF07728.14 gi|313125688|ref|YP_004035958.1| - 0.081 12.9 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zn_ribbon_recom PF13408.6 gi|313125688|ref|YP_004035958.1| - 0.091 13.3 0.6 3.5 8.2 0.0 2.6 3 0 0 3 3 2 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.19 gi|313125688|ref|YP_004035958.1| - 0.099 12.4 0.3 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|313125688|ref|YP_004035958.1| - 0.13 12.3 0.5 0.31 11.1 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|313125688|ref|YP_004035958.1| - 0.17 11.4 3.4 0.46 10.0 3.4 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding Mg_chelatase PF01078.21 gi|313125688|ref|YP_004035958.1| - 0.18 11.2 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|313125688|ref|YP_004035958.1| - 0.18 11.4 0.0 0.34 10.5 0.0 1.4 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Zn-ribbon_8 PF09723.10 gi|313125688|ref|YP_004035958.1| - 0.38 10.9 1.5 0.72 10.0 1.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|313125688|ref|YP_004035958.1| - 3.4 7.7 6.3 1.2 9.1 0.4 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 BAT PF15915.5 gi|313125689|ref|YP_004035959.1| - 1.2e-31 109.7 8.8 1.2e-31 109.7 8.8 4.2 3 1 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|313125689|ref|YP_004035959.1| - 2.1e-28 99.3 6.6 4.5e-15 56.2 0.5 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|313125689|ref|YP_004035959.1| - 3.2e-17 62.0 0.0 8.4e-17 60.7 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|313125689|ref|YP_004035959.1| - 7.3e-14 52.2 0.3 1.1e-06 29.0 0.0 2.5 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|313125689|ref|YP_004035959.1| - 4.9e-12 46.6 0.4 6e-05 23.7 0.1 2.7 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.24 gi|313125689|ref|YP_004035959.1| - 0.00015 21.9 0.0 0.00043 20.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HTH_22 PF13309.6 gi|313125689|ref|YP_004035959.1| - 0.0044 17.1 0.0 0.014 15.5 0.0 1.9 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|313125689|ref|YP_004035959.1| - 0.013 15.0 0.0 0.088 12.3 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_4 PF08448.10 gi|313125689|ref|YP_004035959.1| - 0.51 10.6 6.0 4.8 7.5 0.0 5.1 5 2 0 5 5 5 0 PAS fold DUF1272 PF06906.11 gi|313125690|ref|YP_004035960.1| - 6.4e-05 23.0 0.8 8.2e-05 22.6 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.7 gi|313125690|ref|YP_004035960.1| - 0.00055 19.9 0.6 0.00068 19.6 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|313125690|ref|YP_004035960.1| - 0.00069 19.7 2.8 0.0015 18.6 2.8 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|313125690|ref|YP_004035960.1| - 0.0029 17.6 0.2 0.0033 17.4 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.12 gi|313125690|ref|YP_004035960.1| - 0.0068 15.9 2.3 1.6 8.3 0.2 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|313125690|ref|YP_004035960.1| - 0.0077 15.6 3.0 0.032 13.6 3.0 1.9 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|313125690|ref|YP_004035960.1| - 0.0081 16.1 0.6 0.01 15.8 0.6 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TackOD1 PF18551.1 gi|313125690|ref|YP_004035960.1| - 0.0095 15.6 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|313125690|ref|YP_004035960.1| - 0.012 15.6 0.2 0.014 15.3 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|313125690|ref|YP_004035960.1| - 0.021 15.1 2.2 0.051 13.8 2.1 1.7 1 1 1 2 2 2 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|313125690|ref|YP_004035960.1| - 0.022 14.7 1.3 0.05 13.5 1.3 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|313125690|ref|YP_004035960.1| - 0.031 14.3 0.5 0.034 14.1 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|313125690|ref|YP_004035960.1| - 0.046 13.5 2.5 2.4 8.0 0.4 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|313125690|ref|YP_004035960.1| - 0.049 13.4 1.2 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|313125690|ref|YP_004035960.1| - 0.068 12.9 4.4 0.29 10.9 4.2 2.0 1 1 2 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|313125690|ref|YP_004035960.1| - 0.11 13.0 1.8 0.55 10.7 0.3 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2072 PF09845.9 gi|313125690|ref|YP_004035960.1| - 0.14 12.4 1.3 0.17 12.1 1.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-C2H2 PF00096.26 gi|313125690|ref|YP_004035960.1| - 0.14 12.6 1.1 14 6.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_UBZ PF18439.1 gi|313125690|ref|YP_004035960.1| - 0.21 11.2 1.2 13 5.5 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|313125690|ref|YP_004035960.1| - 0.32 10.4 3.8 1 8.8 0.4 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-C2H2_11 PF16622.5 gi|313125690|ref|YP_004035960.1| - 0.63 9.8 2.2 1.8 8.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-Mss51 PF13824.6 gi|313125690|ref|YP_004035960.1| - 0.71 10.0 5.2 2.2 8.4 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 EMC3_TMCO1 PF01956.16 gi|313125691|ref|YP_004035961.1| - 8.3e-51 172.1 3.3 1.2e-50 171.6 3.3 1.2 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|313125691|ref|YP_004035961.1| - 3.8e-06 26.9 0.6 6.8e-06 26.1 0.6 1.4 1 0 0 1 1 1 1 60Kd inner membrane protein DPM3 PF08285.11 gi|313125691|ref|YP_004035961.1| - 0.025 14.8 1.5 0.027 14.7 0.1 1.8 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Cytidylate_kin2 PF13189.6 gi|313125692|ref|YP_004035962.1| - 6.2e-16 59.0 1.9 6.9e-14 52.4 1.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|313125692|ref|YP_004035962.1| - 4.6e-15 56.3 0.1 6.2e-15 55.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|313125692|ref|YP_004035962.1| - 2.3e-13 50.7 0.2 7.6e-13 49.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|313125692|ref|YP_004035962.1| - 6.2e-09 35.9 0.5 6e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|313125692|ref|YP_004035962.1| - 1.8e-08 34.7 0.7 8.1e-07 29.3 0.7 2.2 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|313125692|ref|YP_004035962.1| - 3.1e-08 33.8 0.1 7.1e-08 32.7 0.1 1.8 1 1 0 1 1 1 1 Adenylate kinase SKI PF01202.22 gi|313125692|ref|YP_004035962.1| - 0.00061 19.9 2.6 0.0082 16.3 2.6 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|313125692|ref|YP_004035962.1| - 0.00097 19.4 1.0 0.003 17.8 1.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313125692|ref|YP_004035962.1| - 0.0014 19.0 0.9 0.0024 18.3 0.9 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|313125692|ref|YP_004035962.1| - 0.0033 17.2 2.0 0.063 13.0 0.4 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|313125692|ref|YP_004035962.1| - 0.0047 17.2 0.0 0.0069 16.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|313125692|ref|YP_004035962.1| - 0.0055 17.1 0.0 0.0085 16.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|313125692|ref|YP_004035962.1| - 0.0057 16.6 0.0 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain dNK PF01712.19 gi|313125692|ref|YP_004035962.1| - 0.008 16.0 0.4 0.22 11.4 0.0 2.2 1 1 1 2 2 2 1 Deoxynucleoside kinase Thymidylate_kin PF02223.17 gi|313125692|ref|YP_004035962.1| - 0.052 13.2 0.1 6.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase Ploopntkinase3 PF18751.1 gi|313125692|ref|YP_004035962.1| - 0.054 13.4 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 PRK PF00485.18 gi|313125692|ref|YP_004035962.1| - 0.073 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|313125692|ref|YP_004035962.1| - 0.081 13.3 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|313125692|ref|YP_004035962.1| - 0.088 13.3 0.0 0.12 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter SRP54 PF00448.22 gi|313125692|ref|YP_004035962.1| - 0.092 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|313125692|ref|YP_004035962.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|313125692|ref|YP_004035962.1| - 0.19 11.2 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.17 gi|313125692|ref|YP_004035962.1| - 0.2 11.4 0.1 0.37 10.6 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TruB_N PF01509.18 gi|313125693|ref|YP_004035963.1| - 1.2e-23 84.1 0.1 2e-13 51.0 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|313125693|ref|YP_004035963.1| - 3.4e-22 78.3 0.2 3.4e-22 78.3 0.2 1.8 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|313125693|ref|YP_004035963.1| - 1.2e-08 34.9 0.0 2.8e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|313125693|ref|YP_004035963.1| - 4e-08 33.1 0.3 7.2e-08 32.3 0.3 1.5 1 0 0 1 1 1 1 PUA domain AstE_AspA PF04952.14 gi|313125694|ref|YP_004035964.1| - 5e-38 130.8 0.0 6.9e-38 130.4 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|313125694|ref|YP_004035964.1| - 0.001 18.6 0.0 0.0014 18.1 0.0 1.1 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic Peptidase_M14 PF00246.24 gi|313125694|ref|YP_004035964.1| - 0.0073 16.1 0.1 0.017 15.0 0.1 1.6 1 1 0 1 1 1 1 Zinc carboxypeptidase Methyltransf_25 PF13649.6 gi|313125695|ref|YP_004035965.1| - 5e-07 30.4 0.1 1.3e-06 29.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125695|ref|YP_004035965.1| - 1.7e-06 28.7 0.1 5.8e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313125695|ref|YP_004035965.1| - 2.1e-06 28.3 0.0 4.4e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125695|ref|YP_004035965.1| - 2.9e-05 23.9 0.0 3.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313125695|ref|YP_004035965.1| - 3.2e-05 23.8 0.0 4.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.16 gi|313125695|ref|YP_004035965.1| - 0.00054 19.2 0.0 0.001 18.3 0.0 1.4 1 0 0 1 1 1 1 mRNA capping enzyme NodS PF05401.11 gi|313125695|ref|YP_004035965.1| - 0.0049 16.5 0.0 0.0071 16.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) FmrO PF07091.11 gi|313125695|ref|YP_004035965.1| - 0.11 12.1 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) AdoMet_MTase PF07757.13 gi|313125695|ref|YP_004035965.1| - 0.15 12.4 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase DUF4064 PF13273.6 gi|313125696|ref|YP_004035966.1| - 0.31 11.3 6.1 1.7 9.0 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Peptidase_M10 PF00413.24 gi|313125697|ref|YP_004035967.1| - 5.9e-12 45.7 0.0 1.9e-07 31.1 0.0 2.3 2 0 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.6 gi|313125697|ref|YP_004035967.1| - 0.00058 20.4 0.2 0.0017 18.9 0.1 1.9 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|313125697|ref|YP_004035967.1| - 0.0072 16.5 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|313125697|ref|YP_004035967.1| - 0.092 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A MLTD_N PF06474.12 gi|313125697|ref|YP_004035967.1| - 0.13 12.4 2.5 0.25 11.5 2.5 1.5 1 0 0 1 1 1 0 MltD lipid attachment motif Peptidase_M54 PF07998.11 gi|313125697|ref|YP_004035967.1| - 0.18 11.8 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M54 ILVD_EDD PF00920.21 gi|313125698|ref|YP_004035968.1| - 1.4e-204 680.5 0.5 1.6e-204 680.3 0.5 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|313125698|ref|YP_004035968.1| - 0.085 13.0 0.7 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 DGC domain MoCF_biosynth PF00994.24 gi|313125699|ref|YP_004035969.1| - 9.9e-31 106.3 0.7 1.3e-30 106.0 0.7 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain ATPgrasp_N PF18130.1 gi|313125699|ref|YP_004035969.1| - 0.12 12.9 2.6 0.77 10.4 1.3 2.6 2 1 0 2 2 2 0 ATP-grasp N-terminal domain Zip PF02535.22 gi|313125699|ref|YP_004035969.1| - 8 5.6 9.6 10 5.2 9.6 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter TrmB PF01978.19 gi|313125700|ref|YP_004035970.1| - 0.00049 19.9 0.2 0.00096 19.0 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|313125700|ref|YP_004035970.1| - 0.0019 17.9 0.1 0.0041 16.8 0.1 1.5 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_20 PF12840.7 gi|313125700|ref|YP_004035970.1| - 0.0021 18.1 0.8 0.0073 16.3 0.8 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313125700|ref|YP_004035970.1| - 0.0083 16.1 0.5 0.021 14.8 0.5 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|313125700|ref|YP_004035970.1| - 0.0085 15.7 0.4 0.019 14.6 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|313125700|ref|YP_004035970.1| - 0.02 14.9 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.20 gi|313125700|ref|YP_004035970.1| - 0.051 13.4 0.2 0.24 11.3 0.2 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313125700|ref|YP_004035970.1| - 0.069 13.0 2.3 0.093 12.6 1.2 1.7 2 0 0 2 2 2 0 MarR family MarR PF01047.22 gi|313125700|ref|YP_004035970.1| - 0.088 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_55 PF18622.1 gi|313125700|ref|YP_004035970.1| - 0.19 12.1 0.0 0.4 11.0 0.0 1.5 1 0 0 1 1 1 0 RctB helix turn helix domain ADH_zinc_N PF00107.26 gi|313125701|ref|YP_004035971.1| - 2e-37 128.1 0.2 7.2e-37 126.3 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|313125701|ref|YP_004035971.1| - 8e-22 78.7 0.0 1.5e-21 77.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|313125701|ref|YP_004035971.1| - 8.8e-21 73.8 0.0 1.9e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|313125701|ref|YP_004035971.1| - 7e-05 22.4 1.1 0.00016 21.2 0.8 1.6 1 1 1 2 2 2 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|313125701|ref|YP_004035971.1| - 0.00023 20.5 0.2 0.00047 19.5 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DapB_N PF01113.20 gi|313125701|ref|YP_004035971.1| - 0.0012 18.9 0.2 0.0027 17.8 0.2 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|313125701|ref|YP_004035971.1| - 0.024 15.1 0.2 0.046 14.2 0.2 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ACP_syn_III_C PF08541.10 gi|313125701|ref|YP_004035971.1| - 0.22 11.7 1.7 0.88 9.8 0.3 2.5 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal acVLRF1 PF18859.1 gi|313125704|ref|YP_004035974.1| - 5.6e-30 104.3 6.2 5.6e-30 104.3 6.2 2.2 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|313125704|ref|YP_004035974.1| - 3.2e-09 37.2 1.9 3.2e-09 37.2 1.9 2.2 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|313125704|ref|YP_004035974.1| - 9.9e-05 22.7 0.0 0.0002 21.7 0.0 1.6 1 1 0 1 1 1 1 eRF1 domain 2 Myosin_tail_1 PF01576.19 gi|313125704|ref|YP_004035974.1| - 0.0063 14.4 12.9 0.01 13.7 12.9 1.2 1 0 0 1 1 1 1 Myosin tail Leu_zip PF15294.6 gi|313125704|ref|YP_004035974.1| - 0.014 14.9 3.5 0.024 14.2 3.5 1.3 1 0 0 1 1 1 0 Leucine zipper TSC22 PF01166.18 gi|313125704|ref|YP_004035974.1| - 0.037 14.3 4.9 1.5 9.2 0.1 2.6 2 0 0 2 2 2 0 TSC-22/dip/bun family CLZ PF16526.5 gi|313125704|ref|YP_004035974.1| - 0.11 12.9 11.2 0.063 13.6 2.3 2.7 3 0 0 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels eIF3_subunit PF08597.10 gi|313125704|ref|YP_004035974.1| - 0.2 11.6 10.1 0.79 9.6 4.7 2.4 2 0 0 2 2 2 0 Translation initiation factor eIF3 subunit AAA_13 PF13166.6 gi|313125704|ref|YP_004035974.1| - 0.21 10.2 2.2 0.33 9.5 2.2 1.2 1 0 0 1 1 1 0 AAA domain Mei5 PF10376.9 gi|313125704|ref|YP_004035974.1| - 0.22 11.4 6.3 0.33 10.8 6.3 1.2 1 0 0 1 1 1 0 Double-strand recombination repair protein DivIC PF04977.15 gi|313125704|ref|YP_004035974.1| - 0.25 11.1 8.9 0.21 11.4 0.8 2.4 1 1 1 2 2 2 0 Septum formation initiator Spc7 PF08317.11 gi|313125704|ref|YP_004035974.1| - 0.57 9.0 4.5 0.88 8.4 4.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2203 PF09969.9 gi|313125704|ref|YP_004035974.1| - 0.7 10.6 6.2 2.1 9.1 3.6 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Pox_A_type_inc PF04508.12 gi|313125704|ref|YP_004035974.1| - 0.79 9.7 5.8 4.7 7.2 0.9 2.7 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat WD40_alt PF14077.6 gi|313125704|ref|YP_004035974.1| - 1.1 9.2 5.5 6.7 6.7 0.5 2.8 2 0 0 2 2 2 0 Alternative WD40 repeat motif Atg14 PF10186.9 gi|313125704|ref|YP_004035974.1| - 1.4 7.9 3.6 2.5 7.1 3.6 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 MID_pPIWI_RE PF18157.1 gi|313125704|ref|YP_004035974.1| - 1.5 9.1 7.1 5.3 7.3 2.5 2.4 2 0 0 2 2 2 0 MID domain of pPIWI_RE Fmp27_WPPW PF10359.9 gi|313125704|ref|YP_004035974.1| - 1.5 7.5 4.8 0.66 8.8 2.5 1.5 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain YdfA_immunity PF12127.8 gi|313125704|ref|YP_004035974.1| - 2.3 7.2 5.2 3.8 6.5 5.2 1.2 1 0 0 1 1 1 0 SigmaW regulon antibacterial ABC_tran_CTD PF16326.5 gi|313125704|ref|YP_004035974.1| - 4.2 7.7 17.4 1.3 9.3 13.2 2.2 2 1 1 3 3 3 0 ABC transporter C-terminal domain Ax_dynein_light PF10211.9 gi|313125704|ref|YP_004035974.1| - 7.9 6.4 9.1 23 4.9 9.0 1.8 1 1 0 1 1 1 0 Axonemal dynein light chain DUF1611 PF07755.11 gi|313125705|ref|YP_004035975.1| - 1.5e-75 252.8 0.1 2.1e-75 252.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|313125705|ref|YP_004035975.1| - 1e-27 96.1 0.0 3.1e-27 94.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain AAA_26 PF13500.6 gi|313125705|ref|YP_004035975.1| - 0.00069 19.5 0.1 0.23 11.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain GFO_IDH_MocA PF01408.22 gi|313125705|ref|YP_004035975.1| - 0.055 14.3 0.0 0.17 12.7 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PCP_red PF08369.10 gi|313125705|ref|YP_004035975.1| - 0.42 10.9 1.4 27 5.1 0.0 3.2 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit MR_MLE_C PF13378.6 gi|313125706|ref|YP_004035976.1| - 8.1e-41 140.0 0.9 1.2e-40 139.4 0.9 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|313125706|ref|YP_004035976.1| - 7.4e-12 45.5 0.1 1.3e-11 44.8 0.1 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|313125706|ref|YP_004035976.1| - 0.0074 15.5 0.0 0.015 14.5 0.0 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus PspA_IM30 PF04012.12 gi|313125708|ref|YP_004035978.1| - 1.4e-30 106.5 32.3 1.4e-30 106.5 32.3 2.0 1 1 1 2 2 2 1 PspA/IM30 family DUF5082 PF16888.5 gi|313125708|ref|YP_004035978.1| - 0.00072 19.8 6.0 0.00072 19.8 6.0 3.6 3 1 0 3 3 3 1 Domain of unknown function (DUF5082) DUF1664 PF07889.12 gi|313125708|ref|YP_004035978.1| - 0.0041 17.2 3.6 0.0041 17.2 3.6 3.8 2 2 2 4 4 4 1 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|313125708|ref|YP_004035978.1| - 0.029 15.0 4.3 0.029 15.0 4.3 4.1 3 2 1 4 4 4 0 SlyX Osmo_CC PF08946.10 gi|313125708|ref|YP_004035978.1| - 0.041 14.1 1.5 0.041 14.1 1.5 4.5 4 1 0 4 4 4 0 Osmosensory transporter coiled coil Prominin PF05478.11 gi|313125708|ref|YP_004035978.1| - 0.1 10.5 9.9 0.18 9.8 9.9 1.4 1 0 0 1 1 1 0 Prominin APG6_N PF17675.1 gi|313125708|ref|YP_004035978.1| - 0.11 13.1 54.1 0.084 13.4 10.4 4.2 1 1 2 3 3 3 0 Apg6 coiled-coil region YlqD PF11068.8 gi|313125708|ref|YP_004035978.1| - 0.24 11.8 33.2 1.5 9.2 0.9 3.3 1 1 1 2 2 2 0 YlqD protein YabA PF06156.13 gi|313125708|ref|YP_004035978.1| - 0.32 11.7 30.3 0.12 13.1 5.3 3.9 1 1 2 3 3 3 0 Initiation control protein YabA ExsD PF16806.5 gi|313125708|ref|YP_004035978.1| - 0.55 10.1 12.1 0.021 14.7 6.0 1.8 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF3450 PF11932.8 gi|313125708|ref|YP_004035978.1| - 0.66 9.2 36.6 2 7.7 9.8 4.0 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) Baculo_PEP_C PF04513.12 gi|313125708|ref|YP_004035978.1| - 0.71 9.9 15.4 0.44 10.6 6.0 3.3 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3535 PF12054.8 gi|313125708|ref|YP_004035978.1| - 1.1 8.5 11.5 0.11 11.7 7.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3535) Spc7 PF08317.11 gi|313125708|ref|YP_004035978.1| - 1.2 7.9 45.1 0.063 12.2 25.6 2.8 1 1 2 3 3 3 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|313125708|ref|YP_004035978.1| - 1.3 9.0 44.8 1.1 9.3 22.3 4.3 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2894 PF11445.8 gi|313125708|ref|YP_004035978.1| - 2.7 8.4 17.7 9.1 6.7 10.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2894) ERM PF00769.19 gi|313125708|ref|YP_004035978.1| - 4.2 7.1 49.8 0.081 12.7 39.0 2.0 1 1 1 2 2 2 0 Ezrin/radixin/moesin family TPR_MLP1_2 PF07926.12 gi|313125708|ref|YP_004035978.1| - 4.5 7.3 45.8 7.6 6.6 7.3 3.9 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein COG6 PF06419.11 gi|313125708|ref|YP_004035978.1| - 4.7 5.3 21.4 0.081 11.1 1.6 2.9 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 Golgin_A5 PF09787.9 gi|313125708|ref|YP_004035978.1| - 7 6.0 43.7 6.2 6.2 24.4 2.4 1 1 0 2 2 2 0 Golgin subfamily A member 5 DASH_Dam1 PF08653.10 gi|313125708|ref|YP_004035978.1| - 7.4 6.5 7.2 8.1 6.3 0.8 3.8 3 1 1 4 4 4 0 DASH complex subunit Dam1 DLH PF01738.18 gi|313125709|ref|YP_004035979.1| - 1e-07 31.8 0.1 1.4e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|313125709|ref|YP_004035979.1| - 1.3e-05 24.6 1.3 0.036 13.3 0.4 2.8 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|313125709|ref|YP_004035979.1| - 2.1e-05 24.3 0.1 2.9e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 gi|313125709|ref|YP_004035979.1| - 2.2e-05 25.1 9.0 0.0064 17.1 3.3 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|313125709|ref|YP_004035979.1| - 0.0013 18.6 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase VirJ PF06057.11 gi|313125709|ref|YP_004035979.1| - 0.0023 17.8 0.1 0.59 10.0 0.0 2.2 1 1 1 2 2 2 2 Bacterial virulence protein (VirJ) FSH1 PF03959.13 gi|313125709|ref|YP_004035979.1| - 0.0057 16.3 0.1 0.032 13.9 0.1 1.8 1 1 0 1 1 1 1 Serine hydrolase (FSH1) DUF1100 PF06500.11 gi|313125709|ref|YP_004035979.1| - 0.0087 14.9 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Thioesterase PF00975.20 gi|313125709|ref|YP_004035979.1| - 0.015 15.4 2.2 3.4 7.7 0.0 2.2 1 1 1 2 2 2 0 Thioesterase domain Lipase_3 PF01764.25 gi|313125709|ref|YP_004035979.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) BAAT_C PF08840.11 gi|313125709|ref|YP_004035979.1| - 0.019 14.9 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal UPF0227 PF05728.12 gi|313125709|ref|YP_004035979.1| - 0.032 14.2 0.1 0.45 10.4 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.21 gi|313125709|ref|YP_004035979.1| - 0.045 13.2 0.3 0.098 12.1 0.2 1.6 1 1 1 2 2 2 0 Prolyl oligopeptidase family Esterase PF00756.20 gi|313125709|ref|YP_004035979.1| - 0.056 13.1 0.2 0.084 12.5 0.2 1.4 1 1 0 1 1 1 0 Putative esterase Abhydrolase_1 PF00561.20 gi|313125709|ref|YP_004035979.1| - 0.13 11.9 0.2 0.78 9.3 0.1 1.9 1 1 1 2 2 2 0 alpha/beta hydrolase fold PRA1 PF03208.19 gi|313125710|ref|YP_004035980.1| - 0.049 13.3 5.3 0.065 12.9 5.3 1.1 1 0 0 1 1 1 0 PRA1 family protein FixQ PF05545.11 gi|313125710|ref|YP_004035980.1| - 9 6.4 12.5 14 5.7 0.0 3.3 2 1 1 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF1304 PF06993.12 gi|313125711|ref|YP_004035981.1| - 1.8 8.6 13.8 1 9.4 6.6 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1304) DUF3382 PF11862.8 gi|313125711|ref|YP_004035981.1| - 2.5 8.4 10.2 0.67 10.3 0.8 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3382) TFIIS_C PF01096.18 gi|313125712|ref|YP_004035982.1| - 6.7e-17 61.1 2.8 6.7e-17 61.1 2.8 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|313125712|ref|YP_004035982.1| - 1e-08 34.9 2.5 1e-08 34.9 2.5 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|313125712|ref|YP_004035982.1| - 0.00016 21.5 10.9 0.021 14.7 1.5 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|313125712|ref|YP_004035982.1| - 0.00039 19.9 14.4 0.18 11.4 3.0 4.0 3 1 0 3 3 3 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|313125712|ref|YP_004035982.1| - 0.0004 20.0 14.4 0.49 10.2 0.1 4.4 4 0 0 4 4 4 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|313125712|ref|YP_004035982.1| - 0.00044 19.6 16.3 0.0033 16.8 2.7 3.6 3 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|313125712|ref|YP_004035982.1| - 0.0016 18.4 1.6 0.0016 18.4 1.6 2.9 2 1 0 2 2 2 1 Double zinc ribbon HypA PF01155.19 gi|313125712|ref|YP_004035982.1| - 0.0052 16.8 8.7 0.24 11.4 0.4 2.4 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|313125712|ref|YP_004035982.1| - 0.012 15.6 0.9 0.012 15.6 0.9 2.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|313125712|ref|YP_004035982.1| - 0.014 15.6 8.5 8.5 6.7 0.1 4.1 4 0 0 4 4 4 0 C4-type zinc ribbon domain ADK_lid PF05191.14 gi|313125712|ref|YP_004035982.1| - 0.02 14.8 8.9 17 5.5 0.2 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid TackOD1 PF18551.1 gi|313125712|ref|YP_004035982.1| - 0.022 14.4 7.8 0.13 11.9 2.5 2.3 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|313125712|ref|YP_004035982.1| - 0.028 14.4 8.0 0.035 14.0 1.5 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-ACC PF17848.1 gi|313125712|ref|YP_004035982.1| - 0.04 14.0 13.9 0.14 12.2 1.9 4.0 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-RRN7 PF11781.8 gi|313125712|ref|YP_004035982.1| - 0.05 13.3 1.6 0.05 13.3 1.6 3.9 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|313125712|ref|YP_004035982.1| - 0.094 13.1 13.4 1.2 9.6 0.1 3.2 1 1 2 3 3 3 0 Restriction alleviation protein Lar DUF2318 PF10080.9 gi|313125712|ref|YP_004035982.1| - 0.11 12.6 10.3 0.34 11.0 2.4 3.0 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) zf_UBZ PF18439.1 gi|313125712|ref|YP_004035982.1| - 0.12 12.0 11.9 2.2 7.9 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger PriA_CRR PF18319.1 gi|313125712|ref|YP_004035982.1| - 0.13 12.2 0.3 0.13 12.2 0.3 2.8 3 1 0 3 3 2 0 PriA DNA helicase Cys-rich region (CRR) domain zinc-ribbons_6 PF07191.12 gi|313125712|ref|YP_004035982.1| - 0.14 12.1 10.5 0.12 12.4 2.0 2.4 2 1 0 2 2 2 0 zinc-ribbons A2L_zn_ribbon PF08792.10 gi|313125712|ref|YP_004035982.1| - 0.37 10.6 0.3 0.37 10.6 0.3 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain Cytochrom_CIII PF02085.16 gi|313125712|ref|YP_004035982.1| - 0.54 10.6 6.8 3.3 8.1 0.3 2.4 1 1 1 2 2 2 0 Class III cytochrome C family Nudix_N_2 PF14803.6 gi|313125712|ref|YP_004035982.1| - 0.68 9.9 12.8 7.2 6.6 0.1 4.1 3 1 1 4 4 4 0 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|313125712|ref|YP_004035982.1| - 0.78 9.5 12.5 2.9 7.6 0.4 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|313125712|ref|YP_004035982.1| - 0.8 9.7 13.7 2.4 8.1 0.8 3.7 4 0 0 4 4 4 0 zinc-ribbon domain IBR PF01485.21 gi|313125712|ref|YP_004035982.1| - 0.82 9.9 13.1 1.1e+03 -0.1 13.1 3.1 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zf-trcl PF13451.6 gi|313125712|ref|YP_004035982.1| - 1 9.3 15.0 11 6.0 0.2 4.0 3 1 0 3 3 3 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|313125712|ref|YP_004035982.1| - 1.2 9.0 19.2 7.1 6.5 1.1 4.3 4 0 0 4 4 4 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|313125712|ref|YP_004035982.1| - 2.6 8.3 17.6 24 5.1 0.6 3.8 2 2 1 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|313125712|ref|YP_004035982.1| - 2.7 8.1 9.9 2.5 8.2 1.0 2.9 2 1 0 2 2 2 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.12 gi|313125712|ref|YP_004035982.1| - 2.7 8.0 10.6 14 5.7 0.1 4.0 4 0 0 4 4 4 0 PhnA Zinc-Ribbon zf-IS66 PF13005.7 gi|313125712|ref|YP_004035982.1| - 3.4 8.2 11.8 44 4.6 0.2 4.0 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 C1_1 PF00130.22 gi|313125712|ref|YP_004035982.1| - 4.2 7.3 12.5 1.4 8.8 2.6 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PHD PF00628.29 gi|313125712|ref|YP_004035982.1| - 4.8 7.2 14.3 9.1 6.3 1.8 3.2 2 2 0 3 3 3 0 PHD-finger Trm112p PF03966.16 gi|313125712|ref|YP_004035982.1| - 5.1 7.7 6.0 10 6.8 0.3 3.0 3 1 0 3 3 3 0 Trm112p-like protein Ima1_N PF09779.9 gi|313125712|ref|YP_004035982.1| - 5.5 7.9 9.4 4 8.3 3.6 2.4 1 1 0 2 2 2 0 Ima1 N-terminal domain Sgf11 PF08209.11 gi|313125712|ref|YP_004035982.1| - 5.6 6.6 12.7 0.3 10.7 0.9 3.3 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-C4_Topoisom PF01396.19 gi|313125712|ref|YP_004035982.1| - 7 6.5 9.7 9.5 6.1 1.9 3.4 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger eIF-5_eIF-2B PF01873.17 gi|313125712|ref|YP_004035982.1| - 8.8 6.2 7.5 1.9 8.4 0.3 2.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 SMN PF06003.12 gi|313125713|ref|YP_004035983.1| - 0.18 11.1 4.1 0.22 10.7 4.1 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) Chlamy_scaf PF09675.10 gi|313125714|ref|YP_004035984.1| - 0.0019 18.5 0.2 0.0077 16.6 0.1 1.9 2 0 0 2 2 2 1 Chlamydia-phage Chp2 scaffold (Chlamy_scaf) RHH_1 PF01402.21 gi|313125714|ref|YP_004035984.1| - 0.007 16.3 0.6 0.007 16.3 0.6 2.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NTS_2 PF15448.6 gi|313125714|ref|YP_004035984.1| - 0.021 15.2 0.1 0.049 14.0 0.1 1.6 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein DUF948 PF06103.11 gi|313125714|ref|YP_004035984.1| - 0.03 14.6 2.6 0.047 13.9 0.8 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) zinc_ribbon_15 PF17032.5 gi|313125714|ref|YP_004035984.1| - 0.048 14.4 0.3 0.078 13.7 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|313125714|ref|YP_004035984.1| - 0.06 13.3 0.4 0.099 12.6 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons FH2 PF02181.23 gi|313125714|ref|YP_004035984.1| - 0.071 12.2 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain Baculo_PEP_C PF04513.12 gi|313125714|ref|YP_004035984.1| - 0.14 12.2 1.0 3.2 7.8 0.3 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|313125714|ref|YP_004035984.1| - 0.17 12.4 2.3 2.5 8.6 0.2 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein E3_UbLigase_R4 PF13764.6 gi|313125714|ref|YP_004035984.1| - 0.17 10.0 3.1 0.24 9.5 0.6 1.9 2 0 0 2 2 2 0 E3 ubiquitin-protein ligase UBR4 Mt_ATP-synt_B PF05405.14 gi|313125714|ref|YP_004035984.1| - 0.27 10.9 2.8 0.25 11.0 1.3 1.7 2 0 0 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) P4Ha_N PF08336.11 gi|313125714|ref|YP_004035984.1| - 0.38 10.8 2.1 4.2 7.4 0.2 2.9 2 1 0 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region XhlA PF10779.9 gi|313125714|ref|YP_004035984.1| - 1.9 8.7 6.6 8.3 6.7 0.2 3.3 2 2 1 3 3 3 0 Haemolysin XhlA RRN3 PF05327.11 gi|313125714|ref|YP_004035984.1| - 2.1 6.8 4.8 3.2 6.2 4.8 1.2 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 YtxH PF12732.7 gi|313125714|ref|YP_004035984.1| - 2.2 8.9 7.7 55 4.4 5.2 2.8 2 1 0 2 2 2 0 YtxH-like protein ATPase PF06745.13 gi|313125715|ref|YP_004035985.1| - 1.3e-08 34.5 0.0 0.001 18.5 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|313125715|ref|YP_004035985.1| - 7e-05 22.5 0.1 0.00021 20.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|313125715|ref|YP_004035985.1| - 0.16 11.2 0.0 1.7 7.9 0.0 2.1 2 0 0 2 2 2 0 Rad51 GHMP_kinases_N PF00288.26 gi|313125716|ref|YP_004035986.1| - 1.6e-06 28.2 0.8 3.9e-06 27.0 0.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|313125716|ref|YP_004035986.1| - 5.3e-05 23.5 0.1 0.00012 22.4 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal DUF2625 PF10946.8 gi|313125716|ref|YP_004035986.1| - 0.014 14.5 0.1 0.54 9.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF2625 TrkA_N PF02254.18 gi|313125717|ref|YP_004035987.1| - 0.024 14.9 0.0 0.03 14.6 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain GMP_synt_C PF00958.22 gi|313125718|ref|YP_004035988.1| - 4e-29 100.5 0.1 5.3e-28 96.9 0.1 2.3 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|313125718|ref|YP_004035988.1| - 6.4e-08 32.0 0.0 8.1e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|313125718|ref|YP_004035988.1| - 1.9e-05 23.6 0.0 0.0016 17.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|313125718|ref|YP_004035988.1| - 0.0099 15.4 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|313125718|ref|YP_004035988.1| - 0.014 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.14 gi|313125718|ref|YP_004035988.1| - 0.055 13.0 0.0 0.23 11.0 0.0 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|313125718|ref|YP_004035988.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family CTP_synth_N PF06418.14 gi|313125719|ref|YP_004035989.1| - 6.1e-124 412.6 0.1 8.2e-124 412.2 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|313125719|ref|YP_004035989.1| - 7.7e-52 175.8 0.0 1.3e-51 175.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313125719|ref|YP_004035989.1| - 2.2e-06 27.6 0.0 9.8e-06 25.5 0.0 2.0 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|313125719|ref|YP_004035989.1| - 0.0018 18.4 0.0 0.0022 18.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|313125719|ref|YP_004035989.1| - 0.059 13.0 0.0 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Sacchrp_dh_NADP PF03435.18 gi|313125720|ref|YP_004035990.1| - 4.5e-12 46.3 2.1 6.6e-12 45.8 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|313125720|ref|YP_004035990.1| - 1.6e-05 24.8 0.0 1.6e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding SDA1 PF05285.12 gi|313125720|ref|YP_004035990.1| - 0.063 12.7 17.5 0.083 12.3 17.5 1.1 1 0 0 1 1 1 0 SDA1 Epimerase PF01370.21 gi|313125720|ref|YP_004035990.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short PF00106.25 gi|313125720|ref|YP_004035990.1| - 0.95 8.9 0.0 0.95 8.9 0.0 2.2 2 0 0 2 2 2 0 short chain dehydrogenase Aldo_ket_red PF00248.21 gi|313125721|ref|YP_004035991.1| - 1.5e-50 172.0 0.0 2e-48 165.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|313125721|ref|YP_004035991.1| - 0.026 13.1 0.0 0.037 12.6 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase PEPcase PF00311.17 gi|313125723|ref|YP_004035993.1| - 1.2e-243 810.8 0.0 1.7e-243 810.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|313125723|ref|YP_004035993.1| - 0.0036 15.9 0.0 0.0059 15.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase EGL-1 PF11430.8 gi|313125723|ref|YP_004035993.1| - 0.0048 16.7 0.5 0.0081 16.0 0.5 1.3 1 0 0 1 1 1 1 Programmed cell death activator EGL-1 UvrD_C_2 PF13538.6 gi|313125724|ref|YP_004035994.1| - 0.11 12.4 0.6 0.19 11.6 0.2 1.6 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain Rieske PF00355.26 gi|313125725|ref|YP_004035995.1| - 0.0014 18.6 0.1 0.0024 17.8 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Aldedh PF00171.22 gi|313125726|ref|YP_004035996.1| - 3.2e-140 467.7 0.1 3.8e-140 467.4 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|313125726|ref|YP_004035996.1| - 3.3e-05 23.1 0.0 5.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) ThiS PF02597.20 gi|313125727|ref|YP_004035997.1| - 1.2e-15 57.9 0.1 1.3e-15 57.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family STN PF07660.14 gi|313125727|ref|YP_004035997.1| - 0.0077 16.0 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Secretin and TonB N terminus short domain Ub-Mut7C PF14451.6 gi|313125727|ref|YP_004035997.1| - 0.041 13.7 0.1 3 7.8 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin Condensation PF00668.20 gi|313125727|ref|YP_004035997.1| - 0.28 9.8 0.0 0.29 9.7 0.0 1.0 1 0 0 1 1 1 0 Condensation domain TrkA_C PF02080.21 gi|313125728|ref|YP_004035998.1| - 1.2e-06 28.2 2.1 2.3e-06 27.4 0.3 2.4 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.21 gi|313125729|ref|YP_004035999.1| - 3.3e-12 46.1 0.8 1.1e-11 44.4 0.1 2.4 3 0 0 3 3 3 1 TrkA-C domain Castor_Poll_mid PF06241.12 gi|313125729|ref|YP_004035999.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel TrkA_N PF02254.18 gi|313125730|ref|YP_004036000.1| - 8.1e-27 93.8 0.4 1.3e-26 93.1 0.4 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|313125730|ref|YP_004036000.1| - 5.5e-13 48.7 2.7 5.5e-13 48.7 2.7 2.2 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|313125730|ref|YP_004036000.1| - 0.0012 18.1 0.6 0.0021 17.3 0.2 1.7 2 0 0 2 2 2 1 Ion transport protein NAD_binding_10 PF13460.6 gi|313125730|ref|YP_004036000.1| - 0.0018 18.2 0.7 0.0018 18.2 0.7 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|313125730|ref|YP_004036000.1| - 0.0023 18.3 0.1 0.0083 16.5 0.1 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding IRK PF01007.20 gi|313125730|ref|YP_004036000.1| - 0.0084 15.9 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Inward rectifier potassium channel transmembrane domain Sacchrp_dh_NADP PF03435.18 gi|313125730|ref|YP_004036000.1| - 0.054 13.8 0.0 0.17 12.1 0.0 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|313125730|ref|YP_004036000.1| - 0.071 12.7 0.8 0.13 11.8 0.1 1.8 2 1 0 2 2 2 0 NmrA-like family Shikimate_DH PF01488.20 gi|313125730|ref|YP_004036000.1| - 0.071 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SLS PF14611.6 gi|313125730|ref|YP_004036000.1| - 0.13 12.0 0.2 0.22 11.3 0.2 1.3 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator HPP PF04982.13 gi|313125731|ref|YP_004036001.1| - 2e-13 50.6 3.3 3.5e-13 49.8 3.3 1.4 1 0 0 1 1 1 1 HPP family Usp PF00582.26 gi|313125731|ref|YP_004036001.1| - 5.2e-09 36.8 0.5 0.00092 19.7 0.1 3.3 2 2 1 3 3 3 2 Universal stress protein family SfLAP PF11139.8 gi|313125731|ref|YP_004036001.1| - 0.0085 15.6 1.0 0.059 12.8 0.3 2.3 2 0 0 2 2 2 1 Sap, sulfolipid-1-addressing protein PNP_UDP_1 PF01048.20 gi|313125732|ref|YP_004036002.1| - 3e-44 151.0 1.4 3.5e-44 150.8 1.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3568 PF12092.8 gi|313125732|ref|YP_004036002.1| - 0.099 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) Cdc6_C PF09079.11 gi|313125734|ref|YP_004036004.1| - 0.023 14.7 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain Dimerisation2 PF16864.5 gi|313125734|ref|YP_004036004.1| - 0.035 14.1 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain DUF433 PF04255.14 gi|313125734|ref|YP_004036004.1| - 0.036 13.9 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF433) TFIIE_alpha PF02002.17 gi|313125734|ref|YP_004036004.1| - 0.067 13.1 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Mga PF08280.11 gi|313125734|ref|YP_004036004.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2250 PF10007.9 gi|313125734|ref|YP_004036004.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) ThiW PF09512.10 gi|313125735|ref|YP_004036005.1| - 0.014 15.5 3.3 0.014 15.5 3.3 2.1 2 1 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) PfkB PF00294.24 gi|313125736|ref|YP_004036006.1| - 4.4e-51 174.0 0.5 9.9e-51 172.8 0.5 1.5 1 1 0 1 1 1 1 pfkB family carbohydrate kinase DUF63 PF01889.17 gi|313125738|ref|YP_004036008.1| - 2.8e-25 90.1 7.6 4.2e-25 89.5 7.6 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.9 gi|313125739|ref|YP_004036009.1| - 3.1e-12 46.6 3.6 4e-12 46.3 3.6 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.21 gi|313125739|ref|YP_004036009.1| - 0.019 14.5 0.3 0.093 12.2 0.0 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein Radical_SAM PF04055.21 gi|313125740|ref|YP_004036010.1| - 1.1e-23 84.5 0.3 2e-23 83.6 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|313125740|ref|YP_004036010.1| - 7e-21 74.1 0.3 1.4e-20 73.2 0.3 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|313125740|ref|YP_004036010.1| - 0.00044 20.2 0.1 0.00097 19.1 0.1 1.6 1 0 0 1 1 1 1 TRAM domain Fer2 PF00111.27 gi|313125740|ref|YP_004036010.1| - 0.21 11.6 1.5 5.1 7.1 0.2 3.1 3 0 0 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Acetyltransf_10 PF13673.7 gi|313125741|ref|YP_004036011.1| - 8.3e-13 48.4 0.0 1.1e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313125741|ref|YP_004036011.1| - 5.1e-11 42.8 0.0 8e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313125741|ref|YP_004036011.1| - 7.2e-11 42.3 0.0 9.2e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|313125741|ref|YP_004036011.1| - 2.1e-06 27.8 1.1 3e-06 27.4 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|313125741|ref|YP_004036011.1| - 0.0013 18.8 0.1 0.0019 18.3 0.1 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|313125741|ref|YP_004036011.1| - 0.0016 18.4 0.0 0.025 14.6 0.0 2.2 1 1 1 2 2 2 1 FR47-like protein Peptidase_S24 PF00717.23 gi|313125742|ref|YP_004036012.1| - 9.8e-05 22.2 0.8 0.00021 21.2 0.8 1.6 1 1 0 1 1 1 1 Peptidase S24-like Cation_efflux PF01545.21 gi|313125743|ref|YP_004036013.1| - 4.3e-39 134.3 4.9 5.5e-39 134.0 4.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|313125743|ref|YP_004036013.1| - 2e-19 69.5 2.5 3.1e-19 68.9 2.5 1.2 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter HIT PF01230.23 gi|313125744|ref|YP_004036014.1| - 1.8e-11 44.6 0.0 2.8e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|313125744|ref|YP_004036014.1| - 4.8e-05 23.8 0.0 9.8e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|313125744|ref|YP_004036014.1| - 0.00033 20.5 0.0 0.00049 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Peptidase_M24 PF00557.24 gi|313125745|ref|YP_004036015.1| - 4.5e-43 147.4 0.3 6.3e-43 146.9 0.3 1.2 1 1 0 1 1 1 1 Metallopeptidase family M24 DUF3323 PF11796.8 gi|313125745|ref|YP_004036015.1| - 0.043 13.7 0.1 0.22 11.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function N-terminus (DUF3323) Metallophos PF00149.28 gi|313125746|ref|YP_004036016.1| - 3.6e-14 53.7 0.1 4.5e-14 53.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|313125746|ref|YP_004036016.1| - 2.3e-07 31.1 0.0 3.5e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Vps16_N PF04841.13 gi|313125746|ref|YP_004036016.1| - 0.2 10.4 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region Sensor PF13796.6 gi|313125747|ref|YP_004036017.1| - 1e-31 110.2 24.4 1.4e-31 109.7 24.4 1.2 1 0 0 1 1 1 1 Putative sensor HTH_20 PF12840.7 gi|313125748|ref|YP_004036018.1| - 6.1e-08 32.6 1.4 1e-07 31.9 1.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313125748|ref|YP_004036018.1| - 0.00076 19.4 0.1 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|313125748|ref|YP_004036018.1| - 0.0018 18.1 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|313125748|ref|YP_004036018.1| - 0.003 17.4 1.5 0.0057 16.4 1.5 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|313125748|ref|YP_004036018.1| - 0.0046 17.4 0.3 0.011 16.2 0.3 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|313125748|ref|YP_004036018.1| - 0.0056 16.6 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|313125748|ref|YP_004036018.1| - 0.0075 16.1 0.2 0.012 15.5 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313125748|ref|YP_004036018.1| - 0.01 15.4 0.1 0.022 14.3 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2474 PF10617.9 gi|313125749|ref|YP_004036019.1| - 1.5 8.7 11.6 2.4 8.1 1.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) ECF_trnsprt PF12822.7 gi|313125750|ref|YP_004036020.1| - 0.016 15.3 2.1 0.018 15.1 2.1 1.1 1 0 0 1 1 1 0 ECF transporter, substrate-specific component DUF3262 PF11660.8 gi|313125750|ref|YP_004036020.1| - 0.055 13.9 0.4 0.055 13.9 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) CbtA PF09490.10 gi|313125750|ref|YP_004036020.1| - 0.057 13.2 4.6 0.067 13.0 4.6 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) Jagunal PF07086.12 gi|313125750|ref|YP_004036020.1| - 0.098 12.7 0.0 0.14 12.2 0.0 1.3 1 1 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis ABC_export PF16962.5 gi|313125750|ref|YP_004036020.1| - 1.2 7.5 6.2 1.3 7.3 6.2 1.0 1 0 0 1 1 1 0 Putative ABC exporter PetG PF02529.15 gi|313125750|ref|YP_004036020.1| - 1.4 8.8 5.7 1.9 8.4 0.0 2.9 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 Sensor PF13796.6 gi|313125751|ref|YP_004036021.1| - 2.5e-29 102.4 22.8 3e-29 102.2 22.8 1.1 1 0 0 1 1 1 1 Putative sensor DUF4097 PF13349.6 gi|313125752|ref|YP_004036022.1| - 1.7e-16 60.4 30.1 5.2e-12 45.7 8.7 3.2 1 1 1 2 2 2 2 Putative adhesin KptA_kDCL PF18176.1 gi|313125752|ref|YP_004036022.1| - 0.067 13.1 0.2 0.87 9.4 0.1 2.4 1 1 0 1 1 1 0 KptA in kinetoplastid DICER domain HMA PF00403.26 gi|313125752|ref|YP_004036022.1| - 0.45 11.0 4.3 0.34 11.4 1.1 2.6 3 0 0 3 3 3 0 Heavy-metal-associated domain Ntox28 PF15605.6 gi|313125752|ref|YP_004036022.1| - 3.6 7.9 6.5 5.1 7.4 0.2 3.2 3 1 1 4 4 4 0 Bacterial toxin 28 Abhydrolase_2 PF02230.16 gi|313125753|ref|YP_004036023.1| - 2.8e-19 69.8 0.0 9e-19 68.1 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|313125753|ref|YP_004036023.1| - 1.8e-12 47.0 0.7 8.2e-09 35.1 0.7 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|313125753|ref|YP_004036023.1| - 5.9e-09 35.8 0.0 7.8e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|313125753|ref|YP_004036023.1| - 4.7e-08 32.8 0.2 0.032 13.7 0.0 3.0 2 1 1 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|313125753|ref|YP_004036023.1| - 8.7e-08 32.1 0.0 1.1e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313125753|ref|YP_004036023.1| - 1.1e-05 26.1 5.6 4.6e-05 24.1 5.6 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Palm_thioest PF02089.15 gi|313125753|ref|YP_004036023.1| - 9.8e-05 22.3 0.0 0.00011 22.1 0.0 1.1 1 0 0 1 1 1 1 Palmitoyl protein thioesterase FSH1 PF03959.13 gi|313125753|ref|YP_004036023.1| - 0.0012 18.6 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PE-PPE PF08237.11 gi|313125753|ref|YP_004036023.1| - 0.0018 17.9 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 PE-PPE domain Abhydrolase_3 PF07859.13 gi|313125753|ref|YP_004036023.1| - 0.009 15.9 0.1 0.081 12.8 0.1 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Esterase_phd PF10503.9 gi|313125753|ref|YP_004036023.1| - 0.011 15.3 0.5 0.035 13.6 0.3 2.1 1 1 1 2 2 2 0 Esterase PHB depolymerase DUF3530 PF12048.8 gi|313125753|ref|YP_004036023.1| - 0.02 14.3 0.0 0.11 12.0 0.0 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3530) Esterase PF00756.20 gi|313125753|ref|YP_004036023.1| - 0.025 14.2 0.0 0.028 14.1 0.0 1.1 1 0 0 1 1 1 0 Putative esterase DUF676 PF05057.14 gi|313125753|ref|YP_004036023.1| - 0.071 12.6 0.0 0.34 10.4 0.0 1.9 1 1 0 1 1 1 0 Putative serine esterase (DUF676) LIP PF03583.14 gi|313125753|ref|YP_004036023.1| - 0.089 12.1 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Secretory lipase AXE1 PF05448.12 gi|313125753|ref|YP_004036023.1| - 0.092 11.4 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) Abhydrolase_5 PF12695.7 gi|313125753|ref|YP_004036023.1| - 0.18 11.5 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family Glyoxalase PF00903.25 gi|313125754|ref|YP_004036024.1| - 2.1e-30 105.5 1.0 3.9e-14 52.9 0.1 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|313125754|ref|YP_004036024.1| - 0.00074 20.3 0.9 1 10.2 0.0 2.5 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|313125754|ref|YP_004036024.1| - 0.0023 18.2 0.3 1.1 9.6 0.1 2.8 3 1 0 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HxlR PF01638.17 gi|313125755|ref|YP_004036025.1| - 3.4e-21 74.9 0.0 4.3e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|313125755|ref|YP_004036025.1| - 4.5e-05 23.5 0.0 6.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|313125755|ref|YP_004036025.1| - 6.2e-05 23.4 0.0 0.0001 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|313125755|ref|YP_004036025.1| - 0.0011 18.9 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313125755|ref|YP_004036025.1| - 0.003 17.4 0.0 0.004 17.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|313125755|ref|YP_004036025.1| - 0.0047 17.0 0.0 0.0065 16.6 0.0 1.3 1 0 0 1 1 1 1 Replication-relaxation MarR PF01047.22 gi|313125755|ref|YP_004036025.1| - 0.0052 16.7 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|313125755|ref|YP_004036025.1| - 0.0085 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|313125755|ref|YP_004036025.1| - 0.047 13.6 0.0 0.069 13.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313125755|ref|YP_004036025.1| - 0.08 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313125755|ref|YP_004036025.1| - 0.12 12.3 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Hol_Tox PF16935.5 gi|313125755|ref|YP_004036025.1| - 0.13 12.4 0.0 9 6.4 0.0 2.3 2 0 0 2 2 2 0 Putative Holin-like Toxin (Hol-Tox) HTH_43 PF09904.9 gi|313125755|ref|YP_004036025.1| - 0.13 12.2 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF1495 PF07381.11 gi|313125755|ref|YP_004036025.1| - 0.16 11.8 0.0 0.88 9.4 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) ABC1 PF03109.16 gi|313125756|ref|YP_004036026.1| - 1.6e-28 99.3 0.1 8.6e-28 96.9 0.0 2.2 2 1 1 3 3 3 1 ABC1 family RIO1 PF01163.22 gi|313125756|ref|YP_004036026.1| - 8.5e-06 25.5 0.0 3.8e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|313125756|ref|YP_004036026.1| - 0.00065 19.7 1.3 0.0032 17.4 0.1 2.7 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|313125756|ref|YP_004036026.1| - 0.12 11.7 0.0 1 8.6 0.0 2.0 2 0 0 2 2 2 0 Protein kinase domain WaaY PF06176.11 gi|313125756|ref|YP_004036026.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) TetR_C_15 PF17918.1 gi|313125756|ref|YP_004036026.1| - 4.8 8.0 7.2 0.78 10.5 0.4 3.2 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Lactamase_B_2 PF12706.7 gi|313125758|ref|YP_004036028.1| - 1.8e-20 73.3 1.2 2.7e-20 72.8 1.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313125758|ref|YP_004036028.1| - 1e-07 32.2 0.8 1.5e-07 31.7 0.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|313125758|ref|YP_004036028.1| - 0.0038 17.1 0.0 0.0061 16.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DSBA PF01323.20 gi|313125759|ref|YP_004036029.1| - 1.8e-36 125.8 0.0 2e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|313125759|ref|YP_004036029.1| - 1.5e-07 31.7 0.3 2.5e-05 24.5 0.0 2.3 1 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|313125759|ref|YP_004036029.1| - 0.036 14.5 0.6 1.3 9.5 0.0 2.3 1 1 0 2 2 2 0 Thioredoxin-like domain adh_short PF00106.25 gi|313125760|ref|YP_004036030.1| - 2.3e-26 92.4 0.0 1.5e-25 89.8 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313125760|ref|YP_004036030.1| - 3.3e-13 49.7 0.2 4.6e-13 49.3 0.2 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|313125760|ref|YP_004036030.1| - 4.4e-07 30.0 0.2 1.2e-06 28.6 0.1 1.6 1 1 0 2 2 2 1 KR domain Epimerase PF01370.21 gi|313125760|ref|YP_004036030.1| - 0.00012 21.6 0.2 0.00026 20.5 0.2 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|313125760|ref|YP_004036030.1| - 0.017 15.1 1.7 0.022 14.6 1.7 1.4 1 1 0 1 1 1 0 NAD(P)H-binding Shikimate_DH PF01488.20 gi|313125760|ref|YP_004036030.1| - 0.063 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase RmlD_sub_bind PF04321.17 gi|313125760|ref|YP_004036030.1| - 0.082 12.0 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Glyco_trans_4_4 PF13579.6 gi|313125760|ref|YP_004036030.1| - 0.99 9.8 5.2 3.6 8.0 5.2 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Asparaginase_2 PF01112.18 gi|313125761|ref|YP_004036031.1| - 8.3e-61 205.7 12.2 9.3e-61 205.5 12.2 1.0 1 0 0 1 1 1 1 Asparaginase Iso_dh PF00180.20 gi|313125762|ref|YP_004036032.1| - 3e-109 365.3 0.1 5.2e-109 364.6 0.1 1.3 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Glyoxalase_4 PF13669.6 gi|313125763|ref|YP_004036033.1| - 4.2e-10 39.9 0.2 5.3e-10 39.5 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|313125763|ref|YP_004036033.1| - 2.3e-07 31.1 1.6 1.8e-06 28.1 1.6 1.9 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|313125763|ref|YP_004036033.1| - 0.03 14.4 0.6 0.13 12.3 0.6 1.8 1 1 0 1 1 1 0 Glyoxalase-like domain DUF1922 PF09082.10 gi|313125764|ref|YP_004036034.1| - 0.0028 17.9 0.4 0.0058 16.9 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Peptidase_S11 PF00768.20 gi|313125764|ref|YP_004036034.1| - 0.0042 16.6 0.1 0.0048 16.4 0.1 1.1 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase DUF99 PF01949.16 gi|313125764|ref|YP_004036034.1| - 0.013 14.9 0.5 0.048 13.1 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function DUF99 zf-3CxxC_2 PF17180.4 gi|313125764|ref|YP_004036034.1| - 0.042 14.6 0.8 0.074 13.8 0.3 1.8 2 0 0 2 2 2 0 Zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|313125764|ref|YP_004036034.1| - 0.044 13.3 0.6 0.2 11.2 0.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF728 PF05304.12 gi|313125764|ref|YP_004036034.1| - 0.068 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF728) EutK_C PF16365.5 gi|313125764|ref|YP_004036034.1| - 0.069 13.2 0.0 0.26 11.3 0.0 2.0 1 0 0 1 1 1 0 Ethanolamine utilization protein EutK C-terminus HypA PF01155.19 gi|313125764|ref|YP_004036034.1| - 0.075 13.1 0.9 0.14 12.2 0.4 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Jiv90 PF14901.6 gi|313125764|ref|YP_004036034.1| - 0.078 13.1 0.7 0.12 12.5 0.7 1.4 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone OrfB_Zn_ribbon PF07282.11 gi|313125764|ref|YP_004036034.1| - 0.1 12.5 0.7 0.3 11.0 0.7 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-Di19 PF05605.12 gi|313125764|ref|YP_004036034.1| - 0.13 12.6 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TrmB PF01978.19 gi|313125764|ref|YP_004036034.1| - 0.18 11.7 0.1 0.18 11.7 0.1 1.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB zf-ISL3 PF14690.6 gi|313125764|ref|YP_004036034.1| - 0.19 12.4 1.9 1.3 9.8 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TBPIP PF07106.13 gi|313125764|ref|YP_004036034.1| - 0.21 11.6 0.0 1.6 8.8 0.0 2.0 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain Zn-ribbon_8 PF09723.10 gi|313125764|ref|YP_004036034.1| - 0.22 11.6 2.8 0.6 10.3 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|313125764|ref|YP_004036034.1| - 0.26 10.8 1.7 5.5 6.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF5403 PF17395.2 gi|313125764|ref|YP_004036034.1| - 0.41 11.0 2.4 8.4 6.8 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5403) FYDLN_acid PF09538.10 gi|313125764|ref|YP_004036034.1| - 0.55 10.9 5.2 0.27 11.9 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_2 PF13240.6 gi|313125764|ref|YP_004036034.1| - 1.4 8.8 4.9 2.5 7.9 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ost5 PF05251.12 gi|313125767|ref|YP_004036037.1| - 5.2 7.4 11.1 5.1 7.4 1.7 3.1 2 1 1 3 3 3 0 Oligosaccharyltransferase subunit 5 DUF2892 PF11127.8 gi|313125768|ref|YP_004036038.1| - 4.1e-15 55.6 1.7 4.9e-15 55.3 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) HTH_10 PF04967.12 gi|313125769|ref|YP_004036039.1| - 2e-17 62.7 0.0 3e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Pyr_redox_3 PF13738.6 gi|313125769|ref|YP_004036039.1| - 0.086 12.1 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HMG-CoA_red PF00368.18 gi|313125770|ref|YP_004036040.1| - 5.1e-129 430.5 3.9 5.9e-129 430.3 3.9 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Amidohydro_3 PF07969.11 gi|313125771|ref|YP_004036041.1| - 2e-89 301.2 13.6 2e-89 301.2 13.6 1.9 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|313125771|ref|YP_004036041.1| - 7.4e-17 61.7 1.8 3.8e-12 46.2 0.2 2.6 2 1 0 2 2 2 2 Amidohydrolase family AIRS_C PF02769.22 gi|313125771|ref|YP_004036041.1| - 0.1 12.8 0.2 0.37 10.9 0.2 2.0 1 1 0 1 1 1 0 AIR synthase related protein, C-terminal domain NadA PF02445.16 gi|313125772|ref|YP_004036042.1| - 8.1e-102 340.4 0.1 9.3e-102 340.2 0.1 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.24 gi|313125773|ref|YP_004036043.1| - 2.3e-79 267.4 9.4 3e-79 267.1 9.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313125773|ref|YP_004036043.1| - 7.7e-11 41.8 2.0 4.3e-05 22.9 1.1 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|313125773|ref|YP_004036043.1| - 5.1e-07 29.1 1.4 1.7e-05 24.1 2.8 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|313125773|ref|YP_004036043.1| - 2.9e-06 26.9 6.3 5.5e-05 22.7 7.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|313125773|ref|YP_004036043.1| - 3e-06 27.1 7.5 0.00011 22.0 7.5 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313125773|ref|YP_004036043.1| - 5.4e-05 22.1 0.2 0.056 12.1 0.5 2.3 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|313125773|ref|YP_004036043.1| - 0.00033 20.0 0.5 0.00033 20.0 0.5 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Succ_DH_flav_C PF02910.20 gi|313125773|ref|YP_004036043.1| - 0.00067 19.6 0.7 0.0015 18.5 0.7 1.6 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.6 gi|313125773|ref|YP_004036043.1| - 0.0059 16.8 1.9 0.016 15.4 1.9 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|313125773|ref|YP_004036043.1| - 0.013 14.7 0.2 0.027 13.7 0.2 1.5 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|313125773|ref|YP_004036043.1| - 0.068 12.4 0.2 0.099 11.9 0.2 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313125773|ref|YP_004036043.1| - 0.15 11.2 0.7 0.28 10.4 0.3 1.6 2 0 0 2 2 2 0 Thi4 family QRPTase_C PF01729.19 gi|313125774|ref|YP_004036044.1| - 4.4e-53 179.5 0.2 5.9e-53 179.1 0.2 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|313125774|ref|YP_004036044.1| - 7.9e-21 73.9 0.1 3e-20 72.1 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|313125774|ref|YP_004036044.1| - 0.15 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family OMPdecase PF00215.24 gi|313125775|ref|YP_004036045.1| - 3.9e-32 111.7 0.0 4.6e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family zf-HIT PF04438.16 gi|313125776|ref|YP_004036046.1| - 0.0022 17.8 2.6 0.0022 17.8 2.6 2.0 2 0 0 2 2 2 1 HIT zinc finger zf-UBP PF02148.19 gi|313125776|ref|YP_004036046.1| - 0.019 15.3 3.7 0.019 15.3 3.7 1.5 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-RRPl_C4 PF17026.5 gi|313125776|ref|YP_004036046.1| - 0.029 14.5 2.8 0.034 14.2 2.8 1.1 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type zf-C3HC4_3 PF13920.6 gi|313125776|ref|YP_004036046.1| - 0.062 13.2 10.0 0.18 11.7 10.1 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-B_box PF00643.24 gi|313125776|ref|YP_004036046.1| - 0.55 10.4 11.5 0.19 11.9 5.7 2.1 1 1 0 2 2 2 0 B-box zinc finger DUF2180 PF09947.9 gi|313125776|ref|YP_004036046.1| - 1.6 8.7 8.4 1.2 9.1 6.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) DnaJ PF00226.31 gi|313125777|ref|YP_004036047.1| - 6.5e-15 55.0 0.1 2.4e-14 53.2 0.0 1.8 1 1 1 2 2 2 1 DnaJ domain VirB3 PF05101.13 gi|313125777|ref|YP_004036047.1| - 0.0016 18.7 1.5 0.0021 18.2 1.5 1.2 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein Phage_holin_3_6 PF07332.11 gi|313125777|ref|YP_004036047.1| - 0.018 15.1 1.1 0.018 15.1 1.1 1.5 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III RPT PF13446.6 gi|313125777|ref|YP_004036047.1| - 0.044 13.7 0.0 0.085 12.8 0.0 1.6 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF2277 PF10041.9 gi|313125777|ref|YP_004036047.1| - 0.057 13.8 0.0 0.09 13.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) HemY_N PF07219.13 gi|313125777|ref|YP_004036047.1| - 3.8 7.8 6.4 32 4.8 6.4 2.3 1 1 0 1 1 1 0 HemY protein N-terminus GTP_EFTU PF00009.27 gi|313125778|ref|YP_004036048.1| - 4.7e-34 117.6 0.0 7.3e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|313125778|ref|YP_004036048.1| - 6.6e-11 42.4 0.6 2.4e-10 40.6 0.6 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|313125778|ref|YP_004036048.1| - 4.1e-08 33.5 0.0 2.1e-07 31.2 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain ATP_bind_1 PF03029.17 gi|313125778|ref|YP_004036048.1| - 0.0031 17.3 0.7 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|313125778|ref|YP_004036048.1| - 0.053 13.6 0.0 0.28 11.3 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313125778|ref|YP_004036048.1| - 0.068 13.1 0.3 1.9 8.4 0.0 2.5 2 1 0 2 2 2 0 RsgA GTPase HAD_2 PF13419.6 gi|313125780|ref|YP_004036050.1| - 1.6e-21 77.2 0.0 3.2e-21 76.2 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125780|ref|YP_004036050.1| - 5.3e-13 49.7 0.3 9.3e-13 48.9 0.3 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125780|ref|YP_004036050.1| - 6.1e-10 39.0 0.3 1e-09 38.3 0.3 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|313125780|ref|YP_004036050.1| - 5.5e-08 33.4 0.5 7.3e-08 33.0 0.5 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|313125780|ref|YP_004036050.1| - 0.22 11.3 0.0 3.4 7.4 0.0 2.1 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Peptidase_M48_N PF16491.5 gi|313125781|ref|YP_004036051.1| - 1.5e-37 129.3 1.8 3.4e-37 128.1 0.1 2.2 2 1 0 2 2 2 1 CAAX prenyl protease N-terminal, five membrane helices Peptidase_M48 PF01435.18 gi|313125781|ref|YP_004036051.1| - 2.2e-37 128.7 0.0 3.2e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|313125781|ref|YP_004036051.1| - 0.0045 16.2 0.0 0.012 14.8 0.0 1.7 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF2268 PF10026.9 gi|313125781|ref|YP_004036051.1| - 0.026 14.1 0.1 0.076 12.6 0.0 1.7 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) DUF4157 PF13699.6 gi|313125781|ref|YP_004036051.1| - 0.15 12.3 0.1 0.31 11.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) MCH PF02289.16 gi|313125783|ref|YP_004036053.1| - 1.5e-121 405.4 0.0 1.7e-121 405.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thiamine_BP PF01910.17 gi|313125784|ref|YP_004036054.1| - 1e-22 79.8 0.4 1.2e-22 79.6 0.4 1.1 1 0 0 1 1 1 1 Thiamine-binding protein HalOD1 PF18545.1 gi|313125784|ref|YP_004036054.1| - 0.0094 16.2 0.5 0.02 15.2 0.5 1.5 1 0 0 1 1 1 1 Halobacterial output domain 1 Virul_fac_BrkB PF03631.15 gi|313125785|ref|YP_004036055.1| - 3e-37 128.6 21.0 3.6e-37 128.4 21.0 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF373 PF04123.13 gi|313125785|ref|YP_004036055.1| - 0.23 10.9 12.8 0.064 12.7 8.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF373) ACT_3 PF10000.9 gi|313125786|ref|YP_004036056.1| - 0.046 13.7 1.1 0.12 12.3 0.1 2.0 2 1 0 2 2 2 0 ACT domain UbiA PF01040.18 gi|313125787|ref|YP_004036057.1| - 1.3e-10 41.0 27.1 1.3e-10 41.0 27.1 3.3 1 1 2 3 3 3 1 UbiA prenyltransferase family ABC_membrane PF00664.23 gi|313125787|ref|YP_004036057.1| - 5.3 6.6 9.4 1.8 8.1 0.1 3.2 3 1 0 3 3 3 0 ABC transporter transmembrane region Copper-bind PF00127.20 gi|313125788|ref|YP_004036058.1| - 9.4e-14 51.7 0.0 1.2e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313125788|ref|YP_004036058.1| - 0.084 13.0 0.0 0.14 12.3 0.0 1.4 1 1 0 1 1 1 0 Cupredoxin-like domain LPAM_1 PF08139.12 gi|313125788|ref|YP_004036058.1| - 0.29 11.7 1.0 0.46 11.1 1.0 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Methyltrn_RNA_3 PF02598.17 gi|313125789|ref|YP_004036059.1| - 3.5e-67 226.9 0.0 3.9e-67 226.8 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|313125789|ref|YP_004036059.1| - 0.002 17.9 0.4 0.0047 16.7 0.1 1.8 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.22 gi|313125790|ref|YP_004036060.1| - 2.2e-105 352.7 0.0 4.4e-105 351.7 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|313125791|ref|YP_004036061.1| - 1.3e-45 155.5 0.5 1.5e-45 155.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|313125792|ref|YP_004036062.1| - 3e-14 53.1 1.6 2e-13 50.5 1.6 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 DUF4162 PF13732.6 gi|313125792|ref|YP_004036062.1| - 0.065 14.0 0.4 12 6.7 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) DUF4777 PF16007.5 gi|313125792|ref|YP_004036062.1| - 0.12 12.7 0.2 0.2 11.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) Ribosomal_L2_C PF03947.18 gi|313125793|ref|YP_004036063.1| - 2.9e-46 156.8 3.1 4.6e-46 156.1 3.1 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|313125793|ref|YP_004036063.1| - 5.3e-19 68.0 0.0 2.6e-18 65.8 0.0 2.2 2 1 1 3 3 3 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|313125794|ref|YP_004036064.1| - 8e-31 105.8 0.0 1e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|313125794|ref|YP_004036064.1| - 0.066 12.3 0.0 0.068 12.2 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|313125795|ref|YP_004036065.1| - 2.6e-17 62.9 0.0 3.5e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ATP-grasp_5 PF13549.6 gi|313125795|ref|YP_004036065.1| - 0.16 11.4 0.0 0.2 11.1 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain Ribosomal_S3_C PF00189.20 gi|313125796|ref|YP_004036066.1| - 1.3e-20 73.6 0.7 3.3e-20 72.4 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|313125796|ref|YP_004036066.1| - 7.5e-17 60.9 0.0 1.6e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|313125796|ref|YP_004036066.1| - 0.0045 16.8 0.2 0.023 14.5 0.0 2.3 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|313125796|ref|YP_004036066.1| - 3.4 7.6 7.8 0.66 9.9 0.1 3.0 2 1 1 3 3 3 0 KH domain Ribosomal_L29 PF00831.23 gi|313125797|ref|YP_004036067.1| - 8.5e-18 64.1 0.4 1e-17 63.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein RPAP1_N PF08621.10 gi|313125797|ref|YP_004036067.1| - 0.03 14.1 0.7 0.06 13.1 0.7 1.6 1 0 0 1 1 1 0 RPAP1-like, N-terminal DUF1192 PF06698.11 gi|313125797|ref|YP_004036067.1| - 0.3 11.2 3.6 5 7.3 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) UPF0086 PF01868.16 gi|313125798|ref|YP_004036068.1| - 5.9e-26 90.2 0.0 6.9e-26 90.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|313125799|ref|YP_004036069.1| - 4e-27 94.1 0.5 5e-27 93.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|313125799|ref|YP_004036069.1| - 0.011 16.1 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal Toxin_31 PF08119.11 gi|313125799|ref|YP_004036069.1| - 0.03 14.1 1.2 0.047 13.4 1.2 1.3 1 0 0 1 1 1 0 Scorpion acidic alpha-KTx toxin family DUF1967 PF09269.11 gi|313125799|ref|YP_004036069.1| - 0.086 12.8 0.1 13 5.9 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1967) Ribosomal_L14 PF00238.19 gi|313125800|ref|YP_004036070.1| - 7.9e-37 126.1 0.5 9.2e-37 125.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|313125801|ref|YP_004036071.1| - 1.3e-22 80.1 0.1 1.5e-22 79.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|313125801|ref|YP_004036071.1| - 7.6e-05 22.5 0.3 0.00016 21.5 0.3 1.6 1 0 0 1 1 1 1 KOW motif Methyltrans_RNA PF04452.14 gi|313125801|ref|YP_004036071.1| - 0.065 12.6 0.0 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase DbpA PF03880.15 gi|313125801|ref|YP_004036071.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 DbpA RNA binding domain Ribosomal_S4e PF00900.20 gi|313125802|ref|YP_004036072.1| - 3.1e-22 78.2 0.0 7.1e-22 77.1 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|313125802|ref|YP_004036072.1| - 4e-14 52.4 0.1 8e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.29 gi|313125802|ref|YP_004036072.1| - 0.0027 17.6 1.6 0.0048 16.8 0.2 2.3 2 0 0 2 2 2 1 KOW motif S4 PF01479.25 gi|313125802|ref|YP_004036072.1| - 0.006 16.3 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 S4 domain BiPBP_C PF06832.12 gi|313125802|ref|YP_004036072.1| - 0.01 15.8 0.0 0.19 11.8 0.0 2.6 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family Myosin_N PF02736.19 gi|313125802|ref|YP_004036072.1| - 4.5 7.2 5.9 1.7 8.5 0.9 2.7 3 0 0 3 3 3 0 Myosin N-terminal SH3-like domain Ribosomal_L5_C PF00673.21 gi|313125803|ref|YP_004036073.1| - 6.1e-21 74.4 0.0 1.1e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|313125803|ref|YP_004036073.1| - 7.9e-17 61.3 0.1 1.5e-16 60.4 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|313125804|ref|YP_004036074.1| - 2.3e-11 43.3 3.6 2.6e-11 43.1 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_S8 PF00410.19 gi|313125805|ref|YP_004036075.1| - 1.3e-24 86.6 0.0 1.6e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|313125806|ref|YP_004036076.1| - 2.9e-28 98.3 2.6 1.6e-13 51.1 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|313125806|ref|YP_004036076.1| - 0.58 10.3 5.2 1 9.5 0.2 3.1 2 2 1 3 3 3 0 Hsp20/alpha crystallin family Ribosomal_L32e PF01655.18 gi|313125807|ref|YP_004036077.1| - 3.3e-35 120.8 0.5 1.7e-34 118.5 0.2 2.0 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|313125807|ref|YP_004036077.1| - 1.3e-14 54.5 1.6 1.8e-13 50.9 0.4 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|313125807|ref|YP_004036077.1| - 7.1e-08 31.9 0.7 0.014 15.3 0.1 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|313125807|ref|YP_004036077.1| - 4.3e-07 29.7 0.0 2e-06 27.5 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|313125807|ref|YP_004036077.1| - 3.6e-05 23.8 0.3 0.00011 22.2 0.3 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|313125807|ref|YP_004036077.1| - 7.4e-05 22.9 0.1 0.00097 19.3 0.0 2.7 3 1 1 4 4 4 1 Pathogenicity locus HHH_3 PF12836.7 gi|313125807|ref|YP_004036077.1| - 0.0012 19.0 0.2 0.43 10.9 0.1 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|313125807|ref|YP_004036077.1| - 0.0045 17.3 0.7 0.7 10.3 0.1 2.9 2 1 1 3 3 3 1 Helix-hairpin-helix domain LytR_C PF13399.6 gi|313125807|ref|YP_004036077.1| - 0.16 13.0 2.2 1.2 10.1 0.5 2.7 2 1 1 3 3 3 0 LytR cell envelope-related transcriptional attenuator Ribosomal_L19e PF01280.20 gi|313125808|ref|YP_004036078.1| - 2.9e-57 192.8 3.0 3.3e-57 192.6 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Tic110 PF16940.5 gi|313125808|ref|YP_004036078.1| - 0.054 12.0 0.0 0.072 11.6 0.0 1.2 1 0 0 1 1 1 0 Chloroplast envelope transporter Vps35 PF03635.17 gi|313125808|ref|YP_004036078.1| - 0.17 10.3 0.0 0.2 10.1 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Ribosomal_L5e PF17144.4 gi|313125809|ref|YP_004036079.1| - 8.9e-30 103.8 0.0 2.6e-18 66.6 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|313125809|ref|YP_004036079.1| - 4e-06 27.2 0.0 5.8e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|313125810|ref|YP_004036080.1| - 1e-21 76.7 0.1 3.1e-21 75.1 0.1 1.9 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|313125810|ref|YP_004036080.1| - 2.4e-21 74.9 0.1 3.7e-21 74.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|313125811|ref|YP_004036081.1| - 1.7e-09 37.4 0.0 3e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e DUF3052 PF11253.8 gi|313125811|ref|YP_004036081.1| - 0.037 13.9 0.2 0.059 13.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) OHCU_decarbox PF09349.10 gi|313125811|ref|YP_004036081.1| - 0.063 13.8 0.0 0.11 13.0 0.0 1.4 1 1 0 1 1 1 0 OHCU decarboxylase Ribosomal_L27A PF00828.19 gi|313125812|ref|YP_004036082.1| - 1.9e-16 60.9 0.3 3e-16 60.3 0.3 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|313125813|ref|YP_004036083.1| - 2.4e-70 237.2 16.4 3e-70 236.9 16.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|313125813|ref|YP_004036083.1| - 7.8e-09 35.2 2.1 7.8e-09 35.2 2.1 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p DUF4399 PF14347.6 gi|313125814|ref|YP_004036084.1| - 2.8e-38 130.2 12.0 1e-23 83.5 1.9 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4399) DUF2436 PF10365.9 gi|313125814|ref|YP_004036084.1| - 3.1e-05 23.8 0.4 0.15 11.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2436) adh_short_C2 PF13561.6 gi|313125815|ref|YP_004036085.1| - 1.9e-68 230.5 5.8 2.3e-68 230.2 5.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313125815|ref|YP_004036085.1| - 1.3e-59 201.0 0.8 1.6e-59 200.7 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313125815|ref|YP_004036085.1| - 2e-19 70.2 0.6 3.2e-19 69.6 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313125815|ref|YP_004036085.1| - 8.1e-06 25.5 0.5 1.6e-05 24.5 0.5 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313125815|ref|YP_004036085.1| - 0.0039 16.7 0.0 0.01 15.2 0.0 1.6 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|313125815|ref|YP_004036085.1| - 0.0059 16.5 8.0 0.014 15.3 8.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|313125815|ref|YP_004036085.1| - 0.02 15.1 0.2 0.039 14.2 0.2 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|313125815|ref|YP_004036085.1| - 0.021 14.7 0.7 0.038 13.9 0.7 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|313125815|ref|YP_004036085.1| - 0.032 13.8 1.0 0.054 13.0 1.0 1.3 1 0 0 1 1 1 0 NmrA-like family Toprim_2 PF13155.6 gi|313125815|ref|YP_004036085.1| - 0.05 14.0 0.6 0.12 12.8 0.2 1.8 2 0 0 2 2 2 0 Toprim-like TrkA_N PF02254.18 gi|313125815|ref|YP_004036085.1| - 0.06 13.6 0.6 0.14 12.5 0.6 1.6 1 0 0 1 1 1 0 TrkA-N domain LytR_C PF13399.6 gi|313125815|ref|YP_004036085.1| - 0.13 13.2 6.3 0.31 12.0 1.4 2.6 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Robl_LC7 PF03259.17 gi|313125815|ref|YP_004036085.1| - 0.79 9.5 5.5 10 6.0 0.1 3.4 3 2 0 3 3 3 0 Roadblock/LC7 domain ETF PF01012.21 gi|313125815|ref|YP_004036085.1| - 1.2 9.0 10.2 0.19 11.6 4.6 2.2 2 1 0 2 2 2 0 Electron transfer flavoprotein domain Acyl_transf_1 PF00698.21 gi|313125816|ref|YP_004036086.1| - 5.8e-41 141.0 0.2 7e-41 140.8 0.2 1.0 1 0 0 1 1 1 1 Acyl transferase domain ACPS PF01648.20 gi|313125817|ref|YP_004036087.1| - 1.6e-14 54.0 0.0 1.8e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily ketoacyl-synt PF00109.26 gi|313125818|ref|YP_004036088.1| - 1.4e-52 178.8 10.5 1.4e-51 175.5 6.5 2.1 2 0 0 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|313125818|ref|YP_004036088.1| - 8.8e-32 109.6 2.9 2e-31 108.4 1.7 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 gi|313125818|ref|YP_004036088.1| - 1.7e-05 24.3 0.7 9e-05 22.0 0.2 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain PP-binding PF00550.25 gi|313125819|ref|YP_004036089.1| - 1.2e-13 51.2 1.1 1.4e-13 51.0 1.1 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site Ribosomal_L50 PF10501.9 gi|313125819|ref|YP_004036089.1| - 0.036 14.2 0.0 0.04 14.0 0.0 1.4 1 1 0 1 1 1 0 Ribosomal subunit 39S PP-binding_2 PF14573.6 gi|313125819|ref|YP_004036089.1| - 0.12 12.6 2.1 0.19 11.9 2.1 1.6 1 1 0 1 1 1 0 Acyl-carrier ADH_zinc_N PF00107.26 gi|313125820|ref|YP_004036090.1| - 4.6e-27 94.6 0.7 7.5e-27 93.9 0.7 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|313125820|ref|YP_004036090.1| - 5.1e-23 82.6 0.8 8.8e-23 81.8 0.8 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|313125820|ref|YP_004036090.1| - 3.9e-08 33.1 0.0 2.4e-07 30.6 0.0 2.3 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|313125820|ref|YP_004036090.1| - 0.1 12.0 1.4 0.17 11.3 1.4 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Ribonuc_red_sm PF00268.21 gi|313125821|ref|YP_004036091.1| - 2.3e-09 37.1 0.0 2.8e-09 36.8 0.0 1.0 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.8 gi|313125821|ref|YP_004036091.1| - 0.045 13.0 5.8 0.65 9.2 0.2 3.0 2 1 1 3 3 3 0 P-aminobenzoate N-oxygenase AurF CBS PF00571.28 gi|313125822|ref|YP_004036092.1| - 1.2e-17 64.1 0.6 2.9e-08 34.0 0.0 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|313125822|ref|YP_004036092.1| - 8.6e-07 29.2 0.0 2.9e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|313125822|ref|YP_004036092.1| - 0.19 11.8 0.1 1.1 9.3 0.1 2.1 1 1 0 1 1 1 0 Putative ParB-like nuclease Abhydrolase_1 PF00561.20 gi|313125824|ref|YP_004036094.1| - 1.7e-14 54.1 0.1 2.5e-08 33.9 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|313125824|ref|YP_004036094.1| - 4e-14 52.5 0.0 5.9e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|313125824|ref|YP_004036094.1| - 5.5e-11 43.5 8.0 6.8e-11 43.2 8.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|313125824|ref|YP_004036094.1| - 1.9e-07 30.9 0.0 6e-05 22.7 0.0 2.5 2 1 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|313125824|ref|YP_004036094.1| - 2.1e-06 27.4 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|313125824|ref|YP_004036094.1| - 3.5e-06 26.8 0.0 1.2e-05 25.1 0.0 1.7 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|313125824|ref|YP_004036094.1| - 0.00027 19.7 0.0 0.15 10.7 0.0 2.1 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 gi|313125824|ref|YP_004036094.1| - 0.004 17.3 0.0 0.019 15.1 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|313125824|ref|YP_004036094.1| - 0.008 15.9 0.0 0.43 10.3 0.0 2.8 3 0 0 3 3 3 1 Alpha/beta hydrolase family Saccharop_dh_N PF04455.12 gi|313125825|ref|YP_004036095.1| - 2.1e-37 127.5 0.1 4.6e-37 126.4 0.1 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|313125825|ref|YP_004036095.1| - 0.00033 20.4 0.2 0.027 14.2 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|313125825|ref|YP_004036095.1| - 0.0011 18.2 0.2 0.13 11.5 0.0 2.8 2 1 1 3 3 3 1 Deoxyhypusine synthase DUF4911 PF16256.5 gi|313125825|ref|YP_004036095.1| - 0.14 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4911) Usp PF00582.26 gi|313125826|ref|YP_004036096.1| - 1.2e-12 48.5 0.1 1.4e-12 48.3 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family PGF-CTERM PF18204.1 gi|313125827|ref|YP_004036097.1| - 6.3e-09 35.5 3.4 6.3e-09 35.5 3.4 2.2 3 0 0 3 3 3 1 PGF-CTERM motif CARDB PF07705.11 gi|313125827|ref|YP_004036097.1| - 4.8e-06 26.8 5.9 1.9e-05 24.8 0.8 2.4 2 0 0 2 2 2 1 CARDB GPI-anchored PF10342.9 gi|313125827|ref|YP_004036097.1| - 0.0045 17.7 0.5 1.1 10.1 0.2 2.4 2 0 0 2 2 2 2 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF4832 PF16116.5 gi|313125827|ref|YP_004036097.1| - 0.024 14.5 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4832) YtkA PF13115.6 gi|313125827|ref|YP_004036097.1| - 3.5 8.3 5.7 29 5.3 0.5 3.3 2 2 2 4 4 4 0 YtkA-like NKAIN PF05640.14 gi|313125828|ref|YP_004036098.1| - 0.095 11.9 1.1 0.12 11.6 1.1 1.1 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein PAS PF00989.25 gi|313125829|ref|YP_004036099.1| - 2.2e-15 56.6 0.2 8.7e-15 54.7 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|313125829|ref|YP_004036099.1| - 6.2e-13 49.2 0.0 1.7e-12 47.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313125829|ref|YP_004036099.1| - 2.4e-08 34.2 0.2 7.3e-08 32.6 0.2 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|313125829|ref|YP_004036099.1| - 3.5e-08 33.7 0.0 7.1e-07 29.4 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|313125829|ref|YP_004036099.1| - 3.2e-07 30.2 0.0 1.3e-06 28.3 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|313125829|ref|YP_004036099.1| - 7e-05 23.0 0.1 0.0011 19.1 0.0 2.9 2 1 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|313125829|ref|YP_004036099.1| - 7.5e-05 22.7 0.0 0.00016 21.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|313125829|ref|YP_004036099.1| - 0.0015 18.4 0.0 0.0033 17.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|313125829|ref|YP_004036099.1| - 0.0064 16.1 0.1 0.013 15.0 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|313125829|ref|YP_004036099.1| - 0.023 14.7 1.4 0.1 12.6 0.4 2.6 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|313125829|ref|YP_004036099.1| - 0.069 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 PAS fold Erythro-docking PF09277.11 gi|313125829|ref|YP_004036099.1| - 0.17 11.8 3.0 5.7 6.9 0.0 3.4 4 0 0 4 4 4 0 Erythronolide synthase, docking Myosin_N PF02736.19 gi|313125829|ref|YP_004036099.1| - 0.22 11.4 0.4 11 6.0 0.0 2.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Zip PF02535.22 gi|313125830|ref|YP_004036100.1| - 4.7e-07 29.3 7.3 4.7e-07 29.3 7.3 2.3 2 0 0 2 2 2 2 ZIP Zinc transporter adh_short PF00106.25 gi|313125831|ref|YP_004036101.1| - 8.7e-37 126.5 0.1 1e-36 126.3 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313125831|ref|YP_004036101.1| - 1.6e-32 112.9 0.7 2e-32 112.6 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|313125831|ref|YP_004036101.1| - 1.1e-08 35.2 0.0 1.4e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313125831|ref|YP_004036101.1| - 1.5e-05 24.6 0.4 0.00051 19.6 0.1 2.8 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|313125831|ref|YP_004036101.1| - 0.00036 20.5 1.4 0.00046 20.1 1.4 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|313125831|ref|YP_004036101.1| - 0.00076 18.7 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein THF_DHG_CYH_C PF02882.19 gi|313125831|ref|YP_004036101.1| - 0.0071 15.7 1.0 0.0076 15.6 0.1 1.5 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.13 gi|313125831|ref|YP_004036101.1| - 0.03 13.9 0.4 0.052 13.1 0.4 1.4 1 0 0 1 1 1 0 NmrA-like family DEAD_assoc PF08494.11 gi|313125831|ref|YP_004036101.1| - 0.034 13.9 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 DEAD/H associated GDP_Man_Dehyd PF16363.5 gi|313125831|ref|YP_004036101.1| - 0.048 13.0 0.0 0.26 10.6 0.0 2.0 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|313125831|ref|YP_004036101.1| - 0.051 12.7 0.0 0.089 11.9 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Amino_oxidase PF01593.24 gi|313125832|ref|YP_004036102.1| - 2.8e-32 112.6 0.1 4.6e-32 111.9 0.1 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|313125832|ref|YP_004036102.1| - 1.8e-17 63.3 0.1 3.8e-17 62.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|313125832|ref|YP_004036102.1| - 5.9e-11 42.6 4.0 2.3e-09 37.3 4.0 2.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313125832|ref|YP_004036102.1| - 5.3e-09 35.7 0.6 1.6e-05 24.3 0.4 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313125832|ref|YP_004036102.1| - 1.7e-07 31.7 1.8 1.5e-05 25.4 0.3 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313125832|ref|YP_004036102.1| - 3.5e-06 26.4 1.6 5.4e-06 25.7 1.6 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|313125832|ref|YP_004036102.1| - 6.1e-06 25.9 0.0 8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313125832|ref|YP_004036102.1| - 1e-05 24.5 0.0 0.001 17.8 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|313125832|ref|YP_004036102.1| - 0.00016 21.1 0.5 0.00028 20.2 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|313125832|ref|YP_004036102.1| - 0.00093 18.5 0.1 0.0063 15.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313125832|ref|YP_004036102.1| - 0.00096 18.5 0.5 0.0017 17.7 0.5 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.6 gi|313125832|ref|YP_004036102.1| - 0.0093 16.4 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding MCRA PF06100.11 gi|313125832|ref|YP_004036102.1| - 0.014 14.2 0.0 0.02 13.7 0.0 1.2 1 0 0 1 1 1 0 MCRA family AlaDh_PNT_C PF01262.21 gi|313125832|ref|YP_004036102.1| - 0.024 13.9 0.3 0.036 13.4 0.3 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|313125832|ref|YP_004036102.1| - 0.027 14.4 0.4 0.53 10.3 0.1 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|313125832|ref|YP_004036102.1| - 0.033 13.3 1.2 0.049 12.7 1.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|313125832|ref|YP_004036102.1| - 0.19 10.5 0.5 0.32 9.8 0.5 1.3 1 0 0 1 1 1 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 gi|313125832|ref|YP_004036102.1| - 0.21 11.2 0.5 0.37 10.4 0.5 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|313125832|ref|YP_004036102.1| - 0.28 11.0 0.3 0.47 10.3 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UbiA PF01040.18 gi|313125833|ref|YP_004036103.1| - 2.2e-26 92.7 21.4 2.9e-26 92.3 21.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Caroten_synth PF04240.12 gi|313125834|ref|YP_004036104.1| - 1.3e-63 214.7 19.5 1.6e-63 214.4 19.5 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein SQS_PSY PF00494.19 gi|313125835|ref|YP_004036105.1| - 4.8e-65 219.7 11.7 6e-65 219.4 11.7 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase zf-Mss51 PF13824.6 gi|313125836|ref|YP_004036106.1| - 0.29 11.3 6.5 0.44 10.7 6.5 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.10 gi|313125836|ref|YP_004036106.1| - 1.1 9.0 4.7 6.9 6.5 0.1 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain HTH_5 PF01022.20 gi|313125837|ref|YP_004036107.1| - 2e-08 34.0 0.0 3.6e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313125837|ref|YP_004036107.1| - 3.8e-07 30.1 0.1 6.5e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313125837|ref|YP_004036107.1| - 0.00024 21.0 0.0 0.00037 20.4 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.10 gi|313125837|ref|YP_004036107.1| - 0.0029 17.5 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_29 PF13551.6 gi|313125837|ref|YP_004036107.1| - 0.0062 16.5 0.0 0.0089 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_45 PF14947.6 gi|313125837|ref|YP_004036107.1| - 0.019 14.9 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_28 PF13518.6 gi|313125837|ref|YP_004036107.1| - 0.055 13.6 0.1 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|313125837|ref|YP_004036107.1| - 0.097 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Phage_rep_org_N PF09681.10 gi|313125837|ref|YP_004036107.1| - 0.16 11.9 0.0 0.27 11.2 0.0 1.4 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) OrfB_IS605 PF01385.19 gi|313125839|ref|YP_004036109.1| - 2e-21 76.5 2.2 2.4e-21 76.2 0.5 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313125839|ref|YP_004036109.1| - 2.5e-18 65.7 0.1 5.7e-18 64.6 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|313125839|ref|YP_004036109.1| - 0.0037 16.7 0.1 0.007 15.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3445 PF11927.8 gi|313125839|ref|YP_004036109.1| - 0.066 12.8 0.5 0.18 11.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3445) EstA_Ig_like PF18435.1 gi|313125839|ref|YP_004036109.1| - 0.087 13.0 1.1 0.82 9.9 1.1 2.5 1 1 0 1 1 1 0 Esterase Ig-like N-terminal domain Rubredoxin_2 PF18073.1 gi|313125839|ref|YP_004036109.1| - 0.25 11.1 1.8 0.98 9.2 1.9 1.9 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF3958 PF13125.6 gi|313125839|ref|YP_004036109.1| - 5.1 7.3 9.8 1.7 8.9 4.8 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3958) Ribonuc_red_lgC PF02867.15 gi|313125840|ref|YP_004036110.1| - 1.3e-150 502.5 0.0 1.7e-150 502.0 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|313125840|ref|YP_004036110.1| - 7.3e-24 83.6 0.2 2.3e-23 82.0 0.1 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain PADR1 PF08063.12 gi|313125840|ref|YP_004036110.1| - 0.2 11.4 4.7 0.38 10.6 4.7 1.5 1 0 0 1 1 1 0 PADR1 (NUC008) domain RNA_POL_M_15KD PF02150.16 gi|313125840|ref|YP_004036110.1| - 0.55 10.2 6.1 1.1 9.2 6.1 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit PAP2 PF01569.21 gi|313125841|ref|YP_004036111.1| - 0.05 13.4 5.4 0.055 13.2 5.4 1.1 1 0 0 1 1 1 0 PAP2 superfamily Fzo_mitofusin PF04799.13 gi|313125841|ref|YP_004036111.1| - 0.071 12.7 2.0 0.081 12.5 2.0 1.1 1 0 0 1 1 1 0 fzo-like conserved region DUF4191 PF13829.6 gi|313125841|ref|YP_004036111.1| - 4 6.7 7.7 4.2 6.6 7.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) GATase PF00117.28 gi|313125842|ref|YP_004036112.1| - 6.5e-45 153.2 0.0 7.4e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313125842|ref|YP_004036112.1| - 3.5e-08 33.5 0.1 1.1e-07 31.9 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.18 gi|313125842|ref|YP_004036112.1| - 0.15 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Chorismate_bind PF00425.18 gi|313125843|ref|YP_004036113.1| - 9.6e-91 303.9 0.0 1.7e-90 303.1 0.0 1.4 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|313125843|ref|YP_004036113.1| - 3.9e-18 66.0 0.0 4.5e-16 59.3 0.0 3.3 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|313125844|ref|YP_004036114.1| - 6e-37 127.3 0.3 6.9e-37 127.1 0.3 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.18 gi|313125844|ref|YP_004036114.1| - 0.00066 18.8 0.4 0.0036 16.4 0.4 1.8 1 1 0 1 1 1 1 FMN-dependent dehydrogenase UPF0180 PF03698.13 gi|313125844|ref|YP_004036114.1| - 0.0029 17.7 0.1 0.0068 16.6 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) TMP-TENI PF02581.17 gi|313125844|ref|YP_004036114.1| - 0.011 15.1 0.7 0.042 13.2 0.3 2.0 1 1 1 2 2 2 0 Thiamine monophosphate synthase BtpA PF03437.15 gi|313125844|ref|YP_004036114.1| - 0.033 13.6 3.0 0.077 12.4 0.8 2.2 1 1 0 2 2 2 0 BtpA family Glycos_transf_3 PF00591.21 gi|313125845|ref|YP_004036115.1| - 9.8e-96 320.2 5.0 1.3e-95 319.8 5.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|313125845|ref|YP_004036115.1| - 5.7e-16 58.1 6.6 6.3e-16 58.0 2.6 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|313125845|ref|YP_004036115.1| - 0.017 14.8 0.0 0.057 13.1 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) DUF2104 PF09877.9 gi|313125848|ref|YP_004036118.1| - 0.0025 18.0 0.7 0.0025 18.0 0.7 1.8 3 0 0 3 3 3 1 Predicted membrane protein (DUF2104) HATPase_c PF02518.26 gi|313125850|ref|YP_004036120.1| - 2.6e-17 63.4 0.0 5.3e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|313125850|ref|YP_004036120.1| - 3.4e-14 52.9 0.0 1e-13 51.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|313125850|ref|YP_004036120.1| - 1.5e-13 50.6 10.5 3.3e-13 49.4 1.3 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|313125850|ref|YP_004036120.1| - 9.1e-10 39.3 0.0 2.7e-09 37.7 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|313125850|ref|YP_004036120.1| - 1.9e-08 34.5 2.5 2.1e-08 34.4 0.3 2.2 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|313125850|ref|YP_004036120.1| - 2.3e-07 31.2 0.6 3.3e-06 27.5 0.0 3.0 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|313125850|ref|YP_004036120.1| - 2e-06 28.2 0.0 4.2e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|313125850|ref|YP_004036120.1| - 0.0018 18.2 0.1 0.005 16.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|313125850|ref|YP_004036120.1| - 0.038 14.0 0.1 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 PAS fold OKR_DC_1_N PF03709.15 gi|313125850|ref|YP_004036120.1| - 0.089 13.1 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain MMR_HSR1_Xtn PF16897.5 gi|313125851|ref|YP_004036121.1| - 0.074 13.1 0.1 0.084 12.9 0.1 1.0 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain N6_N4_Mtase PF01555.18 gi|313125852|ref|YP_004036122.1| - 1.7e-33 116.3 0.0 2.3e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|313125852|ref|YP_004036122.1| - 0.005 17.5 0.1 1.2 9.9 0.0 3.2 3 0 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.18 gi|313125852|ref|YP_004036122.1| - 0.086 12.5 0.0 3.5 7.2 0.0 2.2 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Amidohydro_1 PF01979.20 gi|313125853|ref|YP_004036123.1| - 5.5e-67 226.5 1.7 6.5e-67 226.3 1.7 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313125853|ref|YP_004036123.1| - 1.6e-15 57.6 1.0 1.6e-15 57.6 1.0 1.7 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|313125853|ref|YP_004036123.1| - 0.00032 20.1 0.0 0.0005 19.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase zf-C2H2 PF00096.26 gi|313125855|ref|YP_004036125.1| - 0.0038 17.6 0.4 0.006 17.0 0.4 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-dskA_traR PF01258.17 gi|313125855|ref|YP_004036125.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2HC_2 PF13913.6 gi|313125855|ref|YP_004036125.1| - 0.016 15.1 0.1 0.03 14.2 0.1 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type BRCC36_C PF18110.1 gi|313125855|ref|YP_004036125.1| - 0.02 15.1 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 BRCC36 C-terminal helical domain DUF1201 PF06716.11 gi|313125855|ref|YP_004036125.1| - 0.035 14.1 2.9 0.057 13.4 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1201) DUF2116 PF09889.9 gi|313125855|ref|YP_004036125.1| - 0.089 12.8 0.3 9.6 6.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Iron_transport PF10634.9 gi|313125856|ref|YP_004036126.1| - 2e-06 28.0 0.0 9.5e-05 22.6 0.0 2.4 2 0 0 2 2 2 1 Fe2+ transport protein MG2 PF01835.19 gi|313125856|ref|YP_004036126.1| - 0.054 14.0 0.0 0.23 11.9 0.0 2.1 2 1 0 2 2 2 0 MG2 domain Cas_Cas02710 PF09670.10 gi|313125857|ref|YP_004036127.1| - 0.17 10.6 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) HalOD1 PF18545.1 gi|313125858|ref|YP_004036128.1| - 1.9e-17 63.2 0.1 2.4e-17 62.9 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MCPsignal PF00015.21 gi|313125859|ref|YP_004036129.1| - 2e-42 144.9 54.2 8.1e-42 143.0 20.6 4.6 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|313125859|ref|YP_004036129.1| - 1.6e-10 41.1 16.2 2e-06 28.0 0.2 5.2 5 1 0 5 5 5 2 HAMP domain DUF1664 PF07889.12 gi|313125859|ref|YP_004036129.1| - 1.2e-06 28.6 25.4 0.00046 20.2 3.4 4.7 3 1 1 4 4 4 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|313125859|ref|YP_004036129.1| - 1.7e-05 25.0 33.6 0.039 14.2 1.4 6.6 5 2 2 7 7 6 2 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 gi|313125859|ref|YP_004036129.1| - 0.00016 21.7 22.4 0.012 15.7 4.3 4.2 1 1 3 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|313125859|ref|YP_004036129.1| - 0.00058 20.1 22.5 0.75 10.1 2.9 5.7 3 2 1 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1843 PF08898.10 gi|313125859|ref|YP_004036129.1| - 0.0035 17.8 0.5 0.0035 17.8 0.5 4.2 4 1 0 4 4 3 1 Domain of unknown function (DUF1843) IFT57 PF10498.9 gi|313125859|ref|YP_004036129.1| - 0.0055 15.7 2.1 0.0055 15.7 2.1 3.3 2 1 0 4 4 4 2 Intra-flagellar transport protein 57 AAA_13 PF13166.6 gi|313125859|ref|YP_004036129.1| - 0.0089 14.7 24.5 0.41 9.2 7.8 2.9 1 1 1 2 2 2 2 AAA domain KxDL PF10241.9 gi|313125859|ref|YP_004036129.1| - 0.0098 16.1 0.6 0.0098 16.1 0.6 3.9 3 2 1 4 4 3 1 Uncharacterized conserved protein Importin_rep_6 PF18829.1 gi|313125859|ref|YP_004036129.1| - 0.012 15.7 4.2 0.68 10.1 0.5 2.9 2 0 0 2 2 2 0 Importin repeat 6 Bcr-Abl_Oligo PF09036.10 gi|313125859|ref|YP_004036129.1| - 0.029 14.4 0.2 14 5.7 0.0 3.3 3 0 0 3 3 2 0 Bcr-Abl oncoprotein oligomerisation domain CorA PF01544.18 gi|313125859|ref|YP_004036129.1| - 0.058 12.7 17.6 0.046 13.0 4.6 3.5 2 1 0 3 3 3 0 CorA-like Mg2+ transporter protein Atg14 PF10186.9 gi|313125859|ref|YP_004036129.1| - 0.068 12.3 10.5 0.36 9.9 0.7 2.6 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 ING PF12998.7 gi|313125859|ref|YP_004036129.1| - 0.072 13.7 8.4 0.16 12.5 1.5 3.4 3 1 0 3 3 2 0 Inhibitor of growth proteins N-terminal histone-binding Fib_alpha PF08702.10 gi|313125859|ref|YP_004036129.1| - 0.094 12.9 16.2 1.1 9.5 0.9 4.2 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family TetR PF13972.6 gi|313125859|ref|YP_004036129.1| - 0.1 12.3 1.2 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial transcriptional repressor DUF3450 PF11932.8 gi|313125859|ref|YP_004036129.1| - 0.17 11.2 36.8 0.031 13.6 7.6 4.7 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) IMD PF08397.11 gi|313125859|ref|YP_004036129.1| - 0.17 11.3 3.6 0.34 10.3 1.0 2.7 2 0 0 2 2 2 0 IRSp53/MIM homology domain DASH_Dam1 PF08653.10 gi|313125859|ref|YP_004036129.1| - 0.21 11.4 1.0 7.6 6.4 0.3 3.6 3 0 0 3 3 2 0 DASH complex subunit Dam1 RmuC PF02646.16 gi|313125859|ref|YP_004036129.1| - 0.24 10.5 18.6 0.55 9.3 4.3 4.2 3 1 0 3 3 3 0 RmuC family Fzo_mitofusin PF04799.13 gi|313125859|ref|YP_004036129.1| - 0.27 10.8 11.3 4.1 6.9 0.4 4.3 2 2 2 4 4 4 0 fzo-like conserved region DUF1652 PF07865.11 gi|313125859|ref|YP_004036129.1| - 0.28 11.0 4.2 1.3 8.9 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1652) BAR_3 PF16746.5 gi|313125859|ref|YP_004036129.1| - 0.54 9.9 4.8 1 9.0 1.7 2.4 1 1 0 2 2 2 0 BAR domain of APPL family Corona_S2 PF01601.16 gi|313125859|ref|YP_004036129.1| - 0.78 8.2 5.6 0.22 10.0 0.4 2.4 2 1 1 3 3 3 0 Coronavirus S2 glycoprotein CREPT PF16566.5 gi|313125859|ref|YP_004036129.1| - 0.84 9.8 11.6 2.9 8.1 0.6 3.9 3 1 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour TMF_TATA_bd PF12325.8 gi|313125859|ref|YP_004036129.1| - 1.4 9.2 29.5 0.042 14.1 1.7 5.0 3 2 2 5 5 5 0 TATA element modulatory factor 1 TATA binding Laminin_II PF06009.12 gi|313125859|ref|YP_004036129.1| - 1.6 8.8 36.1 0.45 10.5 5.8 5.1 3 2 1 5 5 4 0 Laminin Domain II Filament PF00038.21 gi|313125859|ref|YP_004036129.1| - 2.3 7.7 30.4 0.075 12.6 4.7 3.9 3 2 1 4 4 4 0 Intermediate filament protein COG5 PF10392.9 gi|313125859|ref|YP_004036129.1| - 3.3 7.9 12.6 22 5.2 0.0 4.3 3 1 1 4 4 4 0 Golgi transport complex subunit 5 Syntaxin_2 PF14523.6 gi|313125859|ref|YP_004036129.1| - 5.3 7.5 12.3 43 4.6 0.1 4.7 1 1 3 4 4 4 0 Syntaxin-like protein Syntaxin-6_N PF09177.11 gi|313125859|ref|YP_004036129.1| - 5.5 7.6 28.3 2 9.0 0.6 5.0 4 1 1 5 5 4 0 Syntaxin 6, N-terminal DUF1759 PF03564.15 gi|313125859|ref|YP_004036129.1| - 5.6 6.9 5.3 2.6 8.0 0.3 2.9 3 1 1 4 4 4 0 Protein of unknown function (DUF1759) DegS PF05384.11 gi|313125859|ref|YP_004036129.1| - 8.1 5.9 19.5 2.5 7.5 0.6 4.7 3 1 0 4 4 4 0 Sensor protein DegS ERM PF00769.19 gi|313125859|ref|YP_004036129.1| - 8.2 6.2 32.3 0.33 10.7 1.4 4.2 2 1 2 4 4 4 0 Ezrin/radixin/moesin family Sec34 PF04136.15 gi|313125859|ref|YP_004036129.1| - 9 6.2 15.3 2.8 7.8 1.4 4.5 3 2 3 6 6 6 0 Sec34-like family Serine_rich PF08824.10 gi|313125859|ref|YP_004036129.1| - 9.2 6.3 13.3 0.54 10.2 1.1 3.7 1 1 1 3 3 3 0 Serine rich protein interaction domain GldM_N PF12081.8 gi|313125859|ref|YP_004036129.1| - 9.3 6.3 21.3 10 6.1 3.4 4.3 2 1 2 4 4 4 0 GldM N-terminal domain zinc_ribbon_2 PF13240.6 gi|313125860|ref|YP_004036130.1| - 7.1e-05 22.4 1.0 0.00012 21.6 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|313125860|ref|YP_004036130.1| - 0.00032 20.7 0.6 0.00046 20.2 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.6 gi|313125860|ref|YP_004036130.1| - 0.18 11.4 1.4 0.34 10.6 1.4 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.18 gi|313125860|ref|YP_004036130.1| - 0.79 9.1 3.3 0.47 9.8 0.4 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others CoA_binding PF02629.19 gi|313125862|ref|YP_004036132.1| - 1.5e-25 89.7 2.7 2e-25 89.3 1.2 2.0 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|313125862|ref|YP_004036132.1| - 1e-12 48.1 1.1 2.2e-12 47.0 1.1 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|313125862|ref|YP_004036132.1| - 1.8e-09 37.5 0.0 2.8e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|313125862|ref|YP_004036132.1| - 1.5e-06 28.7 0.1 3.6e-05 24.2 0.1 2.3 2 1 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|313125863|ref|YP_004036133.1| - 4.6e-68 228.8 1.2 8.8e-68 227.8 1.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|313125863|ref|YP_004036133.1| - 3.8e-19 69.0 7.5 8.4e-19 67.9 3.8 2.5 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|313125863|ref|YP_004036133.1| - 2.1e-13 50.3 1.5 6.2e-13 48.8 1.5 1.7 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|313125863|ref|YP_004036133.1| - 1.1e-10 41.4 3.6 2.4e-09 37.0 0.8 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|313125863|ref|YP_004036133.1| - 1.3e-08 34.6 0.2 2.6e-08 33.6 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|313125863|ref|YP_004036133.1| - 3.2e-07 30.3 0.3 3.2e-07 30.3 0.3 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TF_Zn_Ribbon PF08271.12 gi|313125864|ref|YP_004036134.1| - 0.00077 18.9 3.8 0.086 12.4 0.4 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DUF35_N PF12172.8 gi|313125864|ref|YP_004036134.1| - 0.0055 16.6 3.0 0.19 11.6 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_UBZ PF18439.1 gi|313125864|ref|YP_004036134.1| - 0.016 14.8 1.4 0.81 9.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|313125864|ref|YP_004036134.1| - 0.02 14.8 0.3 4.6 7.3 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|313125864|ref|YP_004036134.1| - 0.021 14.8 1.2 4.8 7.3 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-TFIIB PF13453.6 gi|313125864|ref|YP_004036134.1| - 0.022 14.1 0.3 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Auto_anti-p27 PF06677.12 gi|313125864|ref|YP_004036134.1| - 0.023 14.9 0.6 2.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Mss51 PF13824.6 gi|313125864|ref|YP_004036134.1| - 0.026 14.6 1.3 0.24 11.5 1.3 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|313125864|ref|YP_004036134.1| - 0.054 12.9 1.3 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|313125864|ref|YP_004036134.1| - 0.11 12.2 3.4 5.7 6.7 0.5 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|313125864|ref|YP_004036134.1| - 0.14 12.3 3.1 4.2 7.5 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_3 PF13878.6 gi|313125864|ref|YP_004036134.1| - 0.15 11.9 0.3 2.9 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_ribbon_SprT PF17283.2 gi|313125864|ref|YP_004036134.1| - 0.35 10.8 2.6 2 8.4 0.2 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|313125864|ref|YP_004036134.1| - 0.4 10.5 3.6 0.48 10.2 0.2 2.3 2 1 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.26 gi|313125864|ref|YP_004036134.1| - 0.55 10.8 2.7 8 7.1 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ACC PF17848.1 gi|313125864|ref|YP_004036134.1| - 0.67 10.1 4.5 8.4 6.6 1.7 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain ADH_zinc_N_2 PF13602.6 gi|313125865|ref|YP_004036135.1| - 6e-17 62.9 0.1 1.1e-16 62.1 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|313125865|ref|YP_004036135.1| - 1e-13 51.4 0.0 2e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|313125865|ref|YP_004036135.1| - 7.3e-10 38.7 0.0 1.1e-08 34.9 0.0 2.3 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain NIF3 PF01784.18 gi|313125865|ref|YP_004036135.1| - 0.0037 16.9 0.0 0.0046 16.6 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) ADH_N_2 PF16884.5 gi|313125865|ref|YP_004036135.1| - 0.013 15.4 0.1 0.024 14.5 0.1 1.4 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase AlaDh_PNT_C PF01262.21 gi|313125865|ref|YP_004036135.1| - 0.024 13.9 0.1 0.04 13.2 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short_C2 PF13561.6 gi|313125866|ref|YP_004036136.1| - 3.3e-41 141.4 0.4 6.5e-41 140.4 0.4 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313125866|ref|YP_004036136.1| - 1.9e-37 128.6 0.0 2.3e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|313125866|ref|YP_004036136.1| - 2.5e-05 23.9 0.2 3.3e-05 23.5 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|313125866|ref|YP_004036136.1| - 0.00038 20.4 0.1 0.00071 19.5 0.1 1.4 1 1 0 1 1 1 1 KR domain CdiI_4 PF18624.1 gi|313125866|ref|YP_004036136.1| - 0.039 14.4 0.2 0.066 13.7 0.2 1.2 1 0 0 1 1 1 0 CDI immunity protein NmrA PF05368.13 gi|313125866|ref|YP_004036136.1| - 0.09 12.3 0.1 0.21 11.1 0.1 1.7 1 0 0 1 1 1 0 NmrA-like family SNF PF00209.18 gi|313125867|ref|YP_004036137.1| - 3.6e-48 164.5 28.6 5.4e-25 88.1 14.2 2.7 2 1 0 2 2 2 2 Sodium:neurotransmitter symporter family SNF PF00209.18 gi|313125868|ref|YP_004036138.1| - 6.2e-40 137.4 32.9 1.2e-20 73.8 12.2 2.7 2 1 0 3 3 3 2 Sodium:neurotransmitter symporter family Carboxyl_trans PF01039.22 gi|313125870|ref|YP_004036140.1| - 1.3e-202 673.8 0.0 1.5e-202 673.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|313125870|ref|YP_004036140.1| - 0.0042 16.6 0.1 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Glyco_transf_36 PF06165.11 gi|313125871|ref|YP_004036141.1| - 0.066 12.6 0.0 0.069 12.6 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase family 36 OAD_gamma PF04277.13 gi|313125871|ref|YP_004036141.1| - 4.3 8.0 6.5 0.94 10.1 3.0 1.7 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Ribosomal_S17e PF00833.18 gi|313125873|ref|YP_004036143.1| - 6.5e-13 48.7 0.3 7.2e-13 48.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF447 PF04289.12 gi|313125874|ref|YP_004036144.1| - 1.1e-43 149.1 0.0 1.3e-43 148.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|313125875|ref|YP_004036145.1| - 2.3e-60 204.6 3.6 2.7e-60 204.4 3.6 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.17 gi|313125876|ref|YP_004036146.1| - 1.2e-06 27.9 1.2 1.5e-05 24.2 1.1 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) UPF0052 PF01933.18 gi|313125877|ref|YP_004036147.1| - 5.9e-45 153.7 0.0 7.4e-45 153.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 DUF2259 PF10016.9 gi|313125877|ref|YP_004036147.1| - 0.031 14.2 0.1 0.049 13.6 0.1 1.3 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) HD PF01966.22 gi|313125879|ref|YP_004036149.1| - 4e-12 46.4 4.4 9.3e-12 45.2 4.4 1.7 1 0 0 1 1 1 1 HD domain NMO PF03060.15 gi|313125879|ref|YP_004036149.1| - 0.09 12.2 0.2 0.7 9.2 0.0 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase HD PF01966.22 gi|313125880|ref|YP_004036150.1| - 3.6e-12 46.6 0.8 8.7e-12 45.3 0.8 1.7 1 0 0 1 1 1 1 HD domain Amidohydro_1 PF01979.20 gi|313125881|ref|YP_004036151.1| - 3e-33 115.6 0.1 3.2e-21 76.0 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|313125881|ref|YP_004036151.1| - 1.5e-08 34.4 0.0 2.1e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|313125881|ref|YP_004036151.1| - 7e-06 25.8 5.0 2.7e-05 23.8 0.7 2.2 1 1 1 2 2 2 2 Amidohydrolase family Usp PF00582.26 gi|313125881|ref|YP_004036151.1| - 0.06 13.9 0.6 1.4 9.4 0.2 2.4 2 0 0 2 2 2 0 Universal stress protein family Molybdopterin_N PF18364.1 gi|313125881|ref|YP_004036151.1| - 0.095 12.7 0.7 11 6.1 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin oxidoreductase N-terminal domain Usp PF00582.26 gi|313125882|ref|YP_004036152.1| - 6.8e-42 143.3 0.8 6.8e-42 143.3 0.8 1.3 2 0 0 2 2 2 1 Universal stress protein family ETF PF01012.21 gi|313125882|ref|YP_004036152.1| - 0.16 11.8 2.6 3 7.7 0.4 2.6 1 1 1 2 2 2 0 Electron transfer flavoprotein domain BPL_LplA_LipB PF03099.19 gi|313125883|ref|YP_004036153.1| - 4.6e-15 55.7 0.0 7.1e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|313125883|ref|YP_004036153.1| - 5.4e-12 45.5 0.0 1.2e-11 44.4 0.0 1.6 2 0 0 2 2 2 1 HTH domain BPL_C PF02237.17 gi|313125883|ref|YP_004036153.1| - 4.3e-08 32.9 0.4 9.4e-08 31.8 0.4 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|313125883|ref|YP_004036153.1| - 2.3e-06 27.1 0.0 4.3e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313125883|ref|YP_004036153.1| - 7e-05 22.8 0.0 0.00014 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313125883|ref|YP_004036153.1| - 0.00047 19.9 0.7 0.0011 18.7 0.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|313125883|ref|YP_004036153.1| - 0.0098 15.8 1.0 0.16 12.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|313125883|ref|YP_004036153.1| - 0.013 15.4 0.1 0.06 13.2 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.6 gi|313125883|ref|YP_004036153.1| - 0.031 14.1 0.0 0.094 12.5 0.0 1.8 2 0 0 2 2 1 0 Homeodomain-like domain Toprim_3 PF13362.6 gi|313125883|ref|YP_004036153.1| - 0.041 14.2 0.8 1.6 9.1 0.3 2.6 2 0 0 2 2 2 0 Toprim domain HTH_5 PF01022.20 gi|313125883|ref|YP_004036153.1| - 0.18 11.7 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Mac PF12464.8 gi|313125884|ref|YP_004036154.1| - 1.4e-18 66.9 0.2 2.1e-18 66.3 0.2 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep PF00132.24 gi|313125884|ref|YP_004036154.1| - 1.8e-11 43.3 7.3 7.4e-10 38.2 2.1 3.3 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313125884|ref|YP_004036154.1| - 2.9e-11 42.9 7.2 1.1e-09 37.9 1.5 2.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase CPSase_L_D2 PF02786.17 gi|313125885|ref|YP_004036155.1| - 4e-77 258.5 0.4 6.3e-77 257.8 0.4 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|313125885|ref|YP_004036155.1| - 9e-46 155.0 0.5 2.8e-45 153.4 0.5 1.9 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|313125885|ref|YP_004036155.1| - 5.7e-34 116.5 0.0 1.2e-33 115.4 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|313125885|ref|YP_004036155.1| - 5.6e-17 61.3 6.0 5.6e-17 61.3 6.0 2.5 3 0 0 3 3 2 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 gi|313125885|ref|YP_004036155.1| - 8e-11 41.9 0.0 1.8e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|313125885|ref|YP_004036155.1| - 3.4e-10 39.8 0.2 6.9e-10 38.8 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.6 gi|313125885|ref|YP_004036155.1| - 1.7e-08 34.2 3.0 0.0012 18.6 0.1 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like GARS_A PF01071.19 gi|313125885|ref|YP_004036155.1| - 3.4e-05 23.7 0.1 7e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|313125885|ref|YP_004036155.1| - 0.00011 22.3 0.0 0.00024 21.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|313125885|ref|YP_004036155.1| - 0.0014 18.1 0.1 0.0023 17.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_3 PF13437.6 gi|313125885|ref|YP_004036155.1| - 0.022 15.5 2.5 6.6 7.5 0.0 3.2 3 0 0 3 3 3 0 HlyD family secretion protein ATPgrasp_ST PF14397.6 gi|313125885|ref|YP_004036155.1| - 0.032 13.5 0.0 0.063 12.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|313125885|ref|YP_004036155.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon CoA_binding_2 PF13380.6 gi|313125885|ref|YP_004036155.1| - 0.084 13.4 1.2 0.3 11.6 0.1 2.2 1 1 1 2 2 2 0 CoA binding domain GCV_H PF01597.19 gi|313125885|ref|YP_004036155.1| - 0.11 12.4 4.6 0.14 12.1 1.6 2.3 2 0 0 2 2 2 0 Glycine cleavage H-protein Oxidored_nitro PF00148.19 gi|313125885|ref|YP_004036155.1| - 0.11 11.2 1.3 0.71 8.5 0.6 2.0 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase DUF4019 PF13211.6 gi|313125885|ref|YP_004036155.1| - 0.14 12.6 0.1 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4019) TFIIE-A_C PF11521.8 gi|313125885|ref|YP_004036155.1| - 4.2 7.8 6.9 0.74 10.2 1.2 2.5 2 0 0 2 2 2 0 C-terminal general transcription factor TFIIE alpha Semialdhyde_dh PF01118.24 gi|313125886|ref|YP_004036156.1| - 2.4e-33 115.2 0.0 5.3e-33 114.0 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|313125886|ref|YP_004036156.1| - 1.6e-30 106.5 0.0 2.5e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|313125886|ref|YP_004036156.1| - 0.00058 20.0 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|313125886|ref|YP_004036156.1| - 0.0014 19.3 0.0 0.0028 18.4 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF1416 PF07210.12 gi|313125886|ref|YP_004036156.1| - 0.0059 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1416) Gp_dh_C PF02800.20 gi|313125886|ref|YP_004036156.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|313125886|ref|YP_004036156.1| - 0.083 13.7 0.0 0.15 12.9 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|313125887|ref|YP_004036157.1| - 4e-53 179.4 0.0 5.7e-53 178.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|313125887|ref|YP_004036157.1| - 1.3e-12 47.5 0.0 1.6e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|313125887|ref|YP_004036157.1| - 0.0032 18.0 0.0 0.0084 16.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|313125887|ref|YP_004036157.1| - 0.045 13.3 0.0 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|313125887|ref|YP_004036157.1| - 0.056 13.6 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.21 gi|313125887|ref|YP_004036157.1| - 0.17 11.2 0.0 0.32 10.3 0.0 1.4 1 0 0 1 1 1 0 ThiF family DAO PF01266.24 gi|313125888|ref|YP_004036158.1| - 9.3e-12 45.2 1.5 1e-05 25.3 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313125888|ref|YP_004036158.1| - 5.9e-10 38.9 0.3 0.00037 19.8 0.5 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|313125888|ref|YP_004036158.1| - 2.3e-08 33.7 2.3 3.3e-07 29.9 2.3 2.1 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|313125888|ref|YP_004036158.1| - 2.7e-08 33.1 3.6 2.3e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|313125888|ref|YP_004036158.1| - 1.3e-07 30.7 0.8 0.0013 17.5 2.1 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|313125888|ref|YP_004036158.1| - 2.9e-05 23.3 3.9 5.1e-05 22.5 3.9 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|313125888|ref|YP_004036158.1| - 7.8e-05 21.9 2.0 0.00063 18.9 1.0 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|313125888|ref|YP_004036158.1| - 9e-05 21.7 0.8 0.19 10.7 0.6 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|313125888|ref|YP_004036158.1| - 0.00013 21.5 7.0 0.00013 21.5 7.0 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|313125888|ref|YP_004036158.1| - 0.00022 21.2 2.8 0.0038 17.2 2.8 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|313125888|ref|YP_004036158.1| - 0.00024 20.5 1.0 0.0018 17.6 1.3 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|313125888|ref|YP_004036158.1| - 0.00033 20.8 1.6 0.00087 19.5 0.9 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|313125888|ref|YP_004036158.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|313125888|ref|YP_004036158.1| - 0.032 13.5 0.1 0.05 12.9 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|313125888|ref|YP_004036158.1| - 0.094 11.9 0.2 0.17 11.1 0.2 1.4 1 0 0 1 1 1 0 Thi4 family Usp PF00582.26 gi|313125889|ref|YP_004036159.1| - 2.4e-63 212.9 5.0 5.1e-33 114.5 0.3 2.0 2 0 0 2 2 2 2 Universal stress protein family MGS PF02142.22 gi|313125889|ref|YP_004036159.1| - 0.00021 21.4 0.0 0.85 9.9 0.1 2.4 2 0 0 2 2 2 2 MGS-like domain Cofac_haem_bdg PF04187.13 gi|313125889|ref|YP_004036159.1| - 0.012 15.6 0.3 0.58 10.1 0.0 2.3 2 1 0 2 2 2 0 Haem-binding uptake, Tiki superfamily, ChaN FR47 PF08445.10 gi|313125889|ref|YP_004036159.1| - 0.027 14.5 0.0 0.43 10.6 0.0 2.3 2 0 0 2 2 2 0 FR47-like protein FAD_binding_3 PF01494.19 gi|313125890|ref|YP_004036160.1| - 4.6e-23 82.0 1.0 1.8e-22 80.1 1.0 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313125890|ref|YP_004036160.1| - 4.1e-08 32.8 0.1 0.00022 20.6 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|313125890|ref|YP_004036160.1| - 1.6e-07 30.8 3.5 4.2e-06 26.1 0.1 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|313125890|ref|YP_004036160.1| - 4.5e-07 29.8 0.7 4.5e-07 29.8 0.7 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|313125890|ref|YP_004036160.1| - 2.9e-06 27.4 0.0 9e-06 25.8 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|313125890|ref|YP_004036160.1| - 1.3e-05 24.5 0.9 3e-05 23.3 0.0 2.0 3 0 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 gi|313125890|ref|YP_004036160.1| - 1.4e-05 25.6 0.0 0.0002 21.8 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|313125890|ref|YP_004036160.1| - 1.5e-05 24.5 0.1 0.02 14.2 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|313125890|ref|YP_004036160.1| - 0.0069 15.3 0.0 0.1 11.4 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|313125890|ref|YP_004036160.1| - 0.042 13.8 0.2 13 5.7 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|313125890|ref|YP_004036160.1| - 0.053 12.8 0.0 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Thi4 family TrkA_N PF02254.18 gi|313125890|ref|YP_004036160.1| - 0.15 12.3 0.0 0.58 10.4 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain Pyr_redox_3 PF13738.6 gi|313125890|ref|YP_004036160.1| - 0.17 11.1 0.0 1.8 7.8 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313125890|ref|YP_004036160.1| - 0.17 10.5 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein SE PF08491.10 gi|313125890|ref|YP_004036160.1| - 0.18 10.9 0.1 0.68 8.9 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase Aminotran_5 PF00266.19 gi|313125891|ref|YP_004036161.1| - 1.2e-31 110.0 0.0 1.6e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V AICARFT_IMPCHas PF01808.18 gi|313125891|ref|YP_004036161.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 AICARFT/IMPCHase bienzyme HTH_10 PF04967.12 gi|313125892|ref|YP_004036162.1| - 1.2e-14 53.9 0.1 2.5e-14 52.8 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Abhydrolase_1 PF00561.20 gi|313125893|ref|YP_004036163.1| - 3.5e-16 59.6 0.2 3.8e-15 56.2 0.2 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313125893|ref|YP_004036163.1| - 6.1e-11 43.3 9.4 8.2e-11 42.9 9.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313125893|ref|YP_004036163.1| - 1.3e-10 41.0 0.0 2.3e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|313125893|ref|YP_004036163.1| - 0.0023 17.6 1.0 0.0033 17.1 1.0 1.4 1 1 0 1 1 1 1 Putative esterase DUF1057 PF06342.12 gi|313125893|ref|YP_004036163.1| - 0.01 14.9 0.0 0.014 14.4 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Abhydrolase_4 PF08386.10 gi|313125893|ref|YP_004036163.1| - 0.049 13.7 0.0 0.097 12.8 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein DLH PF01738.18 gi|313125893|ref|YP_004036163.1| - 0.066 12.8 0.0 4.7 6.7 0.1 2.3 2 1 0 2 2 2 0 Dienelactone hydrolase family Glyco_trans_4_4 PF13579.6 gi|313125893|ref|YP_004036163.1| - 7.3 7.0 15.2 3.1 8.2 6.5 2.6 2 2 0 2 2 2 0 Glycosyl transferase 4-like domain CSD PF00313.22 gi|313125894|ref|YP_004036164.1| - 1.5e-19 69.6 0.0 1.7e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|313125894|ref|YP_004036164.1| - 0.043 13.5 2.8 0.063 13.0 2.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|313125894|ref|YP_004036164.1| - 0.094 12.6 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|313125894|ref|YP_004036164.1| - 0.19 11.7 0.6 0.24 11.4 0.6 1.3 1 1 0 1 1 1 0 S1-like NAD_binding_8 PF13450.6 gi|313125895|ref|YP_004036165.1| - 8.1e-05 22.8 0.2 0.0002 21.5 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|313125895|ref|YP_004036165.1| - 0.00043 19.6 0.3 0.00094 18.5 0.3 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313125895|ref|YP_004036165.1| - 0.0027 17.3 0.2 0.059 12.9 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|313125895|ref|YP_004036165.1| - 0.071 13.7 0.3 0.84 10.2 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|313125895|ref|YP_004036165.1| - 0.077 12.1 0.7 0.13 11.3 0.7 1.6 1 1 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|313125895|ref|YP_004036165.1| - 0.079 12.2 0.7 0.14 11.5 0.7 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|313125895|ref|YP_004036165.1| - 0.095 12.2 0.3 0.55 9.7 0.1 2.0 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus HCV_NS4a PF01006.20 gi|313125895|ref|YP_004036165.1| - 0.51 10.1 4.3 1.7 8.4 4.3 1.9 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Exo_endo_phos PF03372.23 gi|313125896|ref|YP_004036166.1| - 1.6e-16 60.6 3.4 4.2e-16 59.2 3.4 1.7 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Histidinol_dh PF00815.20 gi|313125897|ref|YP_004036167.1| - 2.9e-155 517.3 4.1 3.7e-155 517.0 4.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Methyltransf_25 PF13649.6 gi|313125898|ref|YP_004036168.1| - 9.8e-10 39.0 0.0 1.8e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313125898|ref|YP_004036168.1| - 3.1e-08 34.2 0.0 6.1e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313125898|ref|YP_004036168.1| - 1.1e-07 31.9 0.0 1.7e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125898|ref|YP_004036168.1| - 1.1e-07 31.7 0.0 4.1e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313125898|ref|YP_004036168.1| - 1.9e-05 25.4 0.0 5e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|313125898|ref|YP_004036168.1| - 0.00022 20.9 0.0 0.00049 19.7 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|313125898|ref|YP_004036168.1| - 0.13 11.5 0.0 2.5 7.3 0.0 2.0 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|313125898|ref|YP_004036168.1| - 0.14 11.7 0.0 0.29 10.6 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain Fe-S_biosyn PF01521.20 gi|313125899|ref|YP_004036169.1| - 6e-19 68.3 0.0 6.7e-19 68.1 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis eIF-5_eIF-2B PF01873.17 gi|313125900|ref|YP_004036170.1| - 0.17 11.7 1.1 0.26 11.2 1.1 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 AMMECR1 PF01871.17 gi|313125901|ref|YP_004036171.1| - 0.15 11.7 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 AMMECR1 Sterol_MT_C PF08498.10 gi|313125902|ref|YP_004036172.1| - 0.052 13.9 0.1 0.27 11.5 0.1 2.2 1 1 0 1 1 1 0 Sterol methyltransferase C-terminal ERGIC_N PF13850.6 gi|313125902|ref|YP_004036172.1| - 0.41 11.0 2.4 2.1 8.8 0.3 2.2 2 0 0 2 2 2 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) DUF846 PF05832.12 gi|313125902|ref|YP_004036172.1| - 2.7 8.0 9.1 0.37 10.8 1.0 2.3 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF846) DUF2070 PF09843.9 gi|313125902|ref|YP_004036172.1| - 3.2 6.0 11.7 4 5.6 11.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF5353 PF17304.2 gi|313125902|ref|YP_004036172.1| - 4 7.2 11.1 0.98 9.2 1.4 2.9 3 0 0 3 3 3 0 Family of unknown function (DUF5353) DUF2238 PF09997.9 gi|313125903|ref|YP_004036173.1| - 0.0023 17.7 0.3 0.0023 17.7 0.3 1.7 2 1 0 2 2 2 1 Predicted membrane protein (DUF2238) DUF983 PF06170.12 gi|313125903|ref|YP_004036173.1| - 0.22 12.0 6.1 1.7 9.1 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF983) Dodecin PF07311.12 gi|313125904|ref|YP_004036174.1| - 1.7e-23 82.6 1.3 1.9e-23 82.5 1.3 1.0 1 0 0 1 1 1 1 Dodecin 5_nucleotid_C PF02872.18 gi|313125905|ref|YP_004036175.1| - 1.3e-28 100.2 0.0 2.2e-28 99.5 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|313125905|ref|YP_004036175.1| - 7.5e-06 26.6 0.1 1.3e-05 25.8 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|313125905|ref|YP_004036175.1| - 0.67 10.1 3.8 3 8.0 3.8 2.2 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Usp PF00582.26 gi|313125906|ref|YP_004036176.1| - 1.7e-11 44.8 0.5 6.5e-10 39.7 0.5 2.0 1 1 0 1 1 1 1 Universal stress protein family MS_channel PF00924.18 gi|313125907|ref|YP_004036177.1| - 2e-34 118.9 0.0 2.7e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Colicin_V PF02674.16 gi|313125907|ref|YP_004036177.1| - 0.47 10.4 10.5 0.79 9.7 10.5 1.3 1 0 0 1 1 1 0 Colicin V production protein HemY_N PF07219.13 gi|313125907|ref|YP_004036177.1| - 6.9 6.9 0.0 6.9 6.9 0.0 3.2 2 1 2 4 4 4 0 HemY protein N-terminus Regulator_TrmB PF11495.8 gi|313125908|ref|YP_004036178.1| - 6.6e-71 238.2 0.5 9.8e-71 237.6 0.5 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|313125908|ref|YP_004036178.1| - 1.2e-21 76.4 0.0 2.4e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313125908|ref|YP_004036178.1| - 1.3e-07 31.4 0.0 3.7e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313125908|ref|YP_004036178.1| - 9.7e-07 28.8 0.1 3e-06 27.2 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313125908|ref|YP_004036178.1| - 2.7e-05 23.9 0.0 6.9e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313125908|ref|YP_004036178.1| - 0.00023 20.7 0.0 0.0011 18.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313125908|ref|YP_004036178.1| - 0.0014 18.5 0.0 0.0052 16.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|313125908|ref|YP_004036178.1| - 0.0027 18.0 0.0 0.006 16.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_CodY PF08222.11 gi|313125908|ref|YP_004036178.1| - 0.004 16.7 0.0 0.015 14.9 0.0 2.0 1 0 0 1 1 1 1 CodY helix-turn-helix domain GCR1_C PF12550.8 gi|313125908|ref|YP_004036178.1| - 0.015 15.6 0.0 0.098 13.0 0.0 2.1 2 0 0 2 2 2 0 Transcriptional activator of glycolytic enzymes Sigma70_r4 PF04545.16 gi|313125908|ref|YP_004036178.1| - 0.03 13.8 0.0 0.23 11.0 0.0 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 DUF2250 PF10007.9 gi|313125908|ref|YP_004036178.1| - 0.057 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|313125908|ref|YP_004036178.1| - 0.06 13.3 0.0 0.18 11.8 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_9 PF08221.11 gi|313125908|ref|YP_004036178.1| - 0.067 13.3 0.0 0.38 10.9 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.22 gi|313125908|ref|YP_004036178.1| - 0.098 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|313125908|ref|YP_004036178.1| - 0.13 12.3 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|313125908|ref|YP_004036178.1| - 0.15 11.6 0.0 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 winged helix-turn-helix zf-ACC PF17848.1 gi|313125909|ref|YP_004036179.1| - 0.14 12.3 1.9 5.2 7.2 0.2 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|313125909|ref|YP_004036179.1| - 0.23 11.6 1.3 4.1 7.6 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|313125909|ref|YP_004036179.1| - 0.25 11.3 4.5 5.4 7.0 0.5 2.5 1 1 1 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|313125909|ref|YP_004036179.1| - 0.41 10.4 4.5 0.68 9.6 1.6 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|313125909|ref|YP_004036179.1| - 2.3 8.7 5.0 9.4 6.7 5.0 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|313125909|ref|YP_004036179.1| - 4.8 6.8 11.4 8.6 6.0 8.2 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding GFO_IDH_MocA PF01408.22 gi|313125910|ref|YP_004036180.1| - 3.8e-26 92.3 0.2 1.2e-25 90.7 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313125910|ref|YP_004036180.1| - 4e-08 33.3 0.1 4.3e-07 29.9 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|313125910|ref|YP_004036180.1| - 7.5e-05 22.2 0.0 0.00021 20.7 0.0 1.7 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|313125910|ref|YP_004036180.1| - 0.00052 20.5 0.0 0.0012 19.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|313125910|ref|YP_004036180.1| - 0.00078 20.1 0.1 0.0058 17.3 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain NAD_binding_2 PF03446.15 gi|313125910|ref|YP_004036180.1| - 0.0013 18.9 0.1 0.0047 17.1 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase HIGH_NTase1 PF05636.11 gi|313125910|ref|YP_004036180.1| - 0.074 12.2 0.5 0.13 11.4 0.5 1.3 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase IlvN PF07991.12 gi|313125910|ref|YP_004036180.1| - 0.095 12.3 0.1 0.21 11.2 0.0 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Oxidored_q3 PF00499.20 gi|313125911|ref|YP_004036181.1| - 0.0087 15.8 0.0 0.0093 15.7 0.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YMF19 PF02326.15 gi|313125911|ref|YP_004036181.1| - 0.013 16.3 0.0 0.015 16.1 0.0 1.1 1 0 0 1 1 1 0 Plant ATP synthase F0 ABC_tran PF00005.27 gi|313125912|ref|YP_004036182.1| - 2.6e-34 118.7 0.0 4.8e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|313125912|ref|YP_004036182.1| - 2.7e-11 44.1 0.0 9.7e-11 42.3 0.0 2.0 2 0 0 2 2 1 1 MalK OB fold domain SMC_N PF02463.19 gi|313125912|ref|YP_004036182.1| - 1.1e-06 28.2 0.2 7.5e-06 25.5 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|313125912|ref|YP_004036182.1| - 1.4e-06 28.4 0.0 0.0059 16.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|313125912|ref|YP_004036182.1| - 0.00013 21.8 0.0 0.067 12.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|313125912|ref|YP_004036182.1| - 0.00038 20.4 0.0 0.00056 19.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|313125912|ref|YP_004036182.1| - 0.0032 17.9 0.0 0.0077 16.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|313125912|ref|YP_004036182.1| - 0.0034 17.1 0.0 0.0073 16.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|313125912|ref|YP_004036182.1| - 0.0067 16.4 0.1 0.016 15.2 0.1 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|313125912|ref|YP_004036182.1| - 0.0071 16.3 0.0 0.024 14.5 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase TOBE_2 PF08402.10 gi|313125912|ref|YP_004036182.1| - 0.01 16.0 0.1 1.5 9.0 0.1 3.3 2 1 0 2 2 2 0 TOBE domain RNA_helicase PF00910.22 gi|313125912|ref|YP_004036182.1| - 0.011 16.1 0.0 0.093 13.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_22 PF13401.6 gi|313125912|ref|YP_004036182.1| - 0.012 15.9 0.4 0.041 14.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|313125912|ref|YP_004036182.1| - 0.015 15.7 1.0 0.085 13.3 1.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CysA_C_terminal PF17850.1 gi|313125912|ref|YP_004036182.1| - 0.02 15.4 0.1 0.076 13.6 0.0 2.0 2 0 0 2 2 1 0 CysA C-terminal regulatory domain AAA_30 PF13604.6 gi|313125912|ref|YP_004036182.1| - 0.035 13.8 0.0 0.16 11.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|313125912|ref|YP_004036182.1| - 0.045 14.2 0.0 0.083 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313125912|ref|YP_004036182.1| - 0.051 14.1 0.4 0.48 11.0 0.2 2.6 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|313125912|ref|YP_004036182.1| - 0.087 13.1 1.3 0.17 12.1 0.5 2.1 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|313125912|ref|YP_004036182.1| - 0.093 12.3 0.1 0.42 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|313125912|ref|YP_004036182.1| - 0.1 12.0 0.2 6.6 6.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein TOBE PF03459.17 gi|313125912|ref|YP_004036182.1| - 0.12 12.7 0.1 39 4.6 0.0 3.1 2 1 1 3 3 3 0 TOBE domain BPD_transp_1 PF00528.22 gi|313125913|ref|YP_004036183.1| - 2.1e-10 40.7 19.8 2.1e-10 40.7 19.8 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313125914|ref|YP_004036184.1| - 2e-18 66.8 17.8 2e-18 66.8 17.8 2.4 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|313125915|ref|YP_004036185.1| - 1.1e-13 51.7 0.3 2.2e-13 50.7 0.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313125915|ref|YP_004036185.1| - 4.2e-11 43.4 0.4 6.3e-11 42.8 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|313125915|ref|YP_004036185.1| - 4.8 7.2 6.9 11 6.1 6.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DNA_primase_S PF01896.19 gi|313125916|ref|YP_004036186.1| - 4e-23 82.4 0.0 6e-23 81.8 0.0 1.2 1 0 0 1 1 1 1 DNA primase small subunit HHH_5 PF14520.6 gi|313125916|ref|YP_004036186.1| - 0.047 14.3 0.6 0.45 11.2 0.0 2.7 3 1 0 3 3 3 0 Helix-hairpin-helix domain Acyl-CoA_dh_2 PF08028.11 gi|313125917|ref|YP_004036187.1| - 1.8 8.8 6.9 0.92 9.8 0.1 2.6 2 1 1 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain AhpC-TSA PF00578.21 gi|313125918|ref|YP_004036188.1| - 7.3e-39 132.5 0.0 8.7e-39 132.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313125918|ref|YP_004036188.1| - 9.5e-25 87.0 0.0 1.1e-24 86.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|313125918|ref|YP_004036188.1| - 3.2e-06 27.1 0.1 4e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|313125918|ref|YP_004036188.1| - 0.00044 19.9 0.0 0.00046 19.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|313125918|ref|YP_004036188.1| - 0.057 13.5 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme AAA PF00004.29 gi|313125920|ref|YP_004036190.1| - 2.7e-100 332.0 0.0 7.1e-49 165.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313125920|ref|YP_004036190.1| - 2e-31 107.5 5.3 3.6e-17 61.9 1.0 3.3 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|313125920|ref|YP_004036190.1| - 6.4e-24 83.9 0.0 2.8e-23 81.9 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|313125920|ref|YP_004036190.1| - 1.8e-18 67.3 0.1 7.3e-09 36.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|313125920|ref|YP_004036190.1| - 4.6e-17 62.2 0.0 2.8e-08 33.7 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|313125920|ref|YP_004036190.1| - 1e-15 58.6 0.1 5.6e-07 30.1 0.0 3.6 2 2 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|313125920|ref|YP_004036190.1| - 1.2e-15 57.0 0.4 3.1e-15 55.7 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|313125920|ref|YP_004036190.1| - 7.6e-12 45.4 0.5 0.00055 20.0 0.0 4.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|313125920|ref|YP_004036190.1| - 1.4e-11 44.9 0.1 0.00072 19.8 0.0 3.7 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|313125920|ref|YP_004036190.1| - 3.6e-11 43.2 0.0 0.00064 19.8 0.0 3.0 3 0 0 3 3 3 2 AAA domain TIP49 PF06068.13 gi|313125920|ref|YP_004036190.1| - 1.8e-10 40.6 0.0 0.0002 20.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|313125920|ref|YP_004036190.1| - 1.7e-09 38.0 0.0 0.0013 18.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|313125920|ref|YP_004036190.1| - 7.9e-08 32.2 0.0 0.003 17.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|313125920|ref|YP_004036190.1| - 9.9e-08 32.6 0.0 0.0092 16.5 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|313125920|ref|YP_004036190.1| - 1.1e-07 31.5 0.0 0.012 15.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|313125920|ref|YP_004036190.1| - 1.5e-07 31.8 0.0 0.028 14.8 0.0 2.8 2 1 0 2 2 2 2 RNA helicase AAA_3 PF07726.11 gi|313125920|ref|YP_004036190.1| - 1.6e-07 31.2 0.0 0.017 15.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|313125920|ref|YP_004036190.1| - 2.9e-07 29.9 0.0 0.00034 19.9 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|313125920|ref|YP_004036190.1| - 9.3e-07 28.6 0.2 0.85 9.2 0.0 4.3 4 0 0 4 4 4 1 AAA domain Mg_chelatase PF01078.21 gi|313125920|ref|YP_004036190.1| - 9.3e-07 28.4 0.2 0.036 13.5 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|313125920|ref|YP_004036190.1| - 1.3e-06 28.8 0.0 0.07 13.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|313125920|ref|YP_004036190.1| - 1.8e-06 27.9 0.0 0.047 13.7 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|313125920|ref|YP_004036190.1| - 4.3e-06 26.5 0.1 0.097 12.4 0.0 3.1 2 2 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.22 gi|313125920|ref|YP_004036190.1| - 1.3e-05 24.5 0.0 0.15 11.2 0.0 2.7 3 0 0 3 3 3 2 NB-ARC domain AAA_24 PF13479.6 gi|313125920|ref|YP_004036190.1| - 1.6e-05 24.7 0.0 0.073 12.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|313125920|ref|YP_004036190.1| - 1.8e-05 24.2 0.0 0.08 12.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|313125920|ref|YP_004036190.1| - 1.9e-05 25.2 0.0 0.2 12.1 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.6 gi|313125920|ref|YP_004036190.1| - 2.9e-05 23.9 0.0 0.26 11.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|313125920|ref|YP_004036190.1| - 3.3e-05 23.4 0.1 0.79 9.0 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_11 PF13086.6 gi|313125920|ref|YP_004036190.1| - 3.4e-05 23.8 0.3 0.21 11.4 0.0 2.6 3 0 0 3 3 2 2 AAA domain PhoH PF02562.16 gi|313125920|ref|YP_004036190.1| - 3.4e-05 23.4 0.1 0.13 11.7 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|313125920|ref|YP_004036190.1| - 0.00012 21.2 0.0 0.33 10.0 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|313125920|ref|YP_004036190.1| - 0.00013 22.0 0.1 0.84 9.5 0.0 3.4 4 0 0 4 4 3 2 NACHT domain Zeta_toxin PF06414.12 gi|313125920|ref|YP_004036190.1| - 0.00016 21.1 0.1 0.64 9.3 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin NTPase_1 PF03266.15 gi|313125920|ref|YP_004036190.1| - 0.0003 20.8 0.3 1.1 9.1 0.0 3.3 2 1 1 3 3 2 2 NTPase Bac_DnaA PF00308.18 gi|313125920|ref|YP_004036190.1| - 0.00032 20.6 0.0 0.22 11.3 0.0 2.9 2 2 0 2 2 2 1 Bacterial dnaA protein AAA_19 PF13245.6 gi|313125920|ref|YP_004036190.1| - 0.0004 20.7 0.4 1.9 8.8 0.0 2.8 2 1 1 3 3 2 2 AAA domain AAA_17 PF13207.6 gi|313125920|ref|YP_004036190.1| - 0.00049 20.5 0.0 1.5 9.3 0.0 3.1 3 0 0 3 3 2 1 AAA domain Vps4_C PF09336.10 gi|313125920|ref|YP_004036190.1| - 0.00053 19.9 0.2 0.051 13.6 0.0 3.1 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Sigma54_activ_2 PF14532.6 gi|313125920|ref|YP_004036190.1| - 0.00061 19.9 0.0 2.1 8.5 0.0 2.8 3 0 0 3 3 2 2 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|313125920|ref|YP_004036190.1| - 0.00071 19.6 0.8 0.22 11.4 0.0 3.4 3 2 1 4 4 3 1 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|313125920|ref|YP_004036190.1| - 0.0028 17.7 0.0 2.7 7.9 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|313125920|ref|YP_004036190.1| - 0.0044 16.1 0.0 1.6 7.7 0.0 2.6 2 1 0 2 2 2 1 Type II/IV secretion system protein TniB PF05621.11 gi|313125920|ref|YP_004036190.1| - 0.0082 15.6 0.0 10 5.5 0.0 3.3 2 1 1 3 3 3 0 Bacterial TniB protein AFG1_ATPase PF03969.16 gi|313125920|ref|YP_004036190.1| - 0.011 14.7 0.0 4.6 6.0 0.0 2.9 3 0 0 3 3 3 0 AFG1-like ATPase Guanylate_kin PF00625.21 gi|313125920|ref|YP_004036190.1| - 0.015 15.0 0.4 34 4.1 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase Cytidylate_kin PF02224.18 gi|313125920|ref|YP_004036190.1| - 0.016 15.0 0.1 4.9 6.8 0.0 3.0 2 0 0 2 2 2 0 Cytidylate kinase CPT PF07931.12 gi|313125920|ref|YP_004036190.1| - 0.019 14.8 0.0 4.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|313125920|ref|YP_004036190.1| - 0.038 13.9 0.0 12 5.8 0.0 2.4 2 0 0 2 2 2 0 Rad17 P-loop domain Molydop_binding PF01568.21 gi|313125920|ref|YP_004036190.1| - 0.039 14.0 0.0 0.14 12.2 0.1 2.0 2 0 0 2 2 1 0 Molydopterin dinucleotide binding domain Torsin PF06309.11 gi|313125920|ref|YP_004036190.1| - 0.048 13.8 0.0 3.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Torsin AAA_29 PF13555.6 gi|313125920|ref|YP_004036190.1| - 0.051 13.3 0.0 10 5.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.22 gi|313125920|ref|YP_004036190.1| - 0.059 13.5 0.0 18 5.4 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase MCM PF00493.23 gi|313125920|ref|YP_004036190.1| - 0.12 11.5 0.0 3.1 6.8 0.0 2.3 2 0 0 2 2 2 0 MCM P-loop domain KAP_NTPase PF07693.14 gi|313125920|ref|YP_004036190.1| - 0.13 11.5 0.1 12 5.0 0.0 2.7 2 2 1 3 3 3 0 KAP family P-loop domain PIF1 PF05970.14 gi|313125920|ref|YP_004036190.1| - 0.15 11.2 0.0 5.9 5.9 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase Viral_helicase1 PF01443.18 gi|313125920|ref|YP_004036190.1| - 0.17 11.6 0.0 15 5.2 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Hydin_ADK PF17213.3 gi|313125920|ref|YP_004036190.1| - 0.17 12.2 0.3 3.3 8.0 0.1 2.6 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|313125920|ref|YP_004036190.1| - 0.2 11.3 0.0 5.2 6.7 0.0 2.7 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) OrfB_Zn_ribbon PF07282.11 gi|313125922|ref|YP_004036192.1| - 1.1e-23 82.9 2.8 1.1e-23 82.9 2.8 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313125922|ref|YP_004036192.1| - 1.2e-07 32.0 0.0 3.2e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 Probable transposase HypA PF01155.19 gi|313125922|ref|YP_004036192.1| - 0.043 13.8 0.3 0.095 12.7 0.3 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|313125922|ref|YP_004036192.1| - 5.5 6.8 8.3 17 5.3 2.3 2.7 1 1 1 2 2 2 0 zinc-ribbon domain Abhydrolase_6 PF12697.7 gi|313125923|ref|YP_004036193.1| - 2.5e-20 74.1 3.7 2.9e-20 73.8 3.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313125923|ref|YP_004036193.1| - 9.7e-20 70.8 0.0 1.2e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|313125923|ref|YP_004036193.1| - 7.7e-16 58.5 0.1 1.1e-09 38.4 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|313125923|ref|YP_004036193.1| - 0.02 14.7 0.0 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|313125923|ref|YP_004036193.1| - 0.027 14.6 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_2 PF02230.16 gi|313125923|ref|YP_004036193.1| - 0.07 12.9 0.4 4.5 7.0 0.0 2.7 2 1 1 3 3 3 0 Phospholipase/Carboxylesterase DUF3948 PF13134.6 gi|313125923|ref|YP_004036193.1| - 0.13 12.0 1.0 0.27 11.0 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3948) FSH1 PF03959.13 gi|313125923|ref|YP_004036193.1| - 0.18 11.5 0.1 1.2 8.7 0.0 2.3 2 1 0 2 2 2 0 Serine hydrolase (FSH1) Pantoate_transf PF02548.15 gi|313125924|ref|YP_004036194.1| - 1.4e-98 329.4 0.6 1.5e-98 329.3 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|313125924|ref|YP_004036194.1| - 0.00012 21.6 2.6 0.033 13.7 0.7 2.6 1 1 2 3 3 3 2 Phosphoenolpyruvate phosphomutase IF-2B PF01008.17 gi|313125926|ref|YP_004036196.1| - 2.5e-43 148.3 1.9 3.3e-43 147.9 1.9 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family CinA_KH PF18146.1 gi|313125926|ref|YP_004036196.1| - 0.0087 16.2 0.4 0.0087 16.2 0.4 2.0 2 1 0 2 2 2 1 Damage-inducible protein CinA KH domain THDPS_N_2 PF14805.6 gi|313125926|ref|YP_004036196.1| - 0.025 14.8 1.5 0.05 13.8 0.1 2.1 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DUF927 PF06048.11 gi|313125926|ref|YP_004036196.1| - 0.034 13.7 0.8 0.059 12.9 0.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF927) ABC_tran PF00005.27 gi|313125927|ref|YP_004036197.1| - 1.7e-31 109.6 0.0 2.6e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|313125927|ref|YP_004036197.1| - 3.9e-11 43.1 5.6 9.9e-11 41.8 5.8 1.5 2 0 0 2 2 2 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|313125927|ref|YP_004036197.1| - 6e-08 32.4 0.8 4.8e-06 26.2 0.0 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|313125927|ref|YP_004036197.1| - 0.0001 22.3 0.2 0.077 12.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313125927|ref|YP_004036197.1| - 0.00064 20.2 0.1 0.0026 18.2 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|313125927|ref|YP_004036197.1| - 0.0012 18.6 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|313125927|ref|YP_004036197.1| - 0.0021 18.3 0.0 0.006 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|313125927|ref|YP_004036197.1| - 0.0035 17.6 0.4 0.044 14.1 0.2 2.5 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|313125927|ref|YP_004036197.1| - 0.0064 15.8 0.4 0.021 14.1 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin RsgA_GTPase PF03193.16 gi|313125927|ref|YP_004036197.1| - 0.017 15.0 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|313125927|ref|YP_004036197.1| - 0.038 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313125927|ref|YP_004036197.1| - 0.052 13.3 6.9 0.035 13.8 2.4 2.6 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|313125927|ref|YP_004036197.1| - 0.089 12.9 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|313125927|ref|YP_004036197.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313125927|ref|YP_004036197.1| - 0.19 12.3 0.0 0.39 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|313125927|ref|YP_004036197.1| - 0.64 10.3 3.4 0.89 9.8 0.5 2.7 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313125927|ref|YP_004036197.1| - 0.94 9.0 5.4 0.34 10.4 1.1 2.5 2 1 0 2 2 2 0 AAA domain EI24 PF07264.11 gi|313125927|ref|YP_004036197.1| - 3.6 7.8 13.4 3.6 7.8 0.2 2.2 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Acetyltransf_9 PF13527.7 gi|313125929|ref|YP_004036199.1| - 8.4e-11 42.1 0.0 2.7e-10 40.4 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313125929|ref|YP_004036199.1| - 0.00093 19.4 0.1 0.0024 18.1 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313125929|ref|YP_004036199.1| - 0.072 13.5 0.1 0.23 11.9 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PqqD PF05402.12 gi|313125930|ref|YP_004036200.1| - 2.6e-16 59.7 0.3 2.6e-16 59.7 0.3 1.3 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_20 PF12840.7 gi|313125930|ref|YP_004036200.1| - 0.014 15.5 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NTP_transf_5 PF14907.6 gi|313125931|ref|YP_004036201.1| - 5.6e-59 199.8 0.0 7e-59 199.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase TFIIB_C_1 PF18542.1 gi|313125931|ref|YP_004036201.1| - 0.08 13.0 1.1 0.41 10.7 1.0 2.1 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 Hpr_kinase_C PF07475.12 gi|313125932|ref|YP_004036202.1| - 2.7e-06 27.0 0.2 4.7e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain ABC_tran PF00005.27 gi|313125932|ref|YP_004036202.1| - 0.0051 17.3 0.0 0.0088 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|313125932|ref|YP_004036202.1| - 0.016 14.9 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4649 PF15507.6 gi|313125932|ref|YP_004036202.1| - 0.019 14.9 0.0 0.76 9.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4649) AAA_16 PF13191.6 gi|313125932|ref|YP_004036202.1| - 0.023 15.1 0.1 0.04 14.3 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313125932|ref|YP_004036202.1| - 0.11 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATPase PF06745.13 gi|313125932|ref|YP_004036202.1| - 0.15 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 KaiC GFO_IDH_MocA PF01408.22 gi|313125934|ref|YP_004036204.1| - 2.4e-14 54.2 0.0 3.8e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313125934|ref|YP_004036204.1| - 1.6e-12 47.5 0.1 4.4e-12 46.0 0.1 1.8 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|313125934|ref|YP_004036204.1| - 0.011 15.4 0.0 0.04 13.6 0.0 1.8 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain AP_endonuc_2 PF01261.24 gi|313125935|ref|YP_004036205.1| - 3.1e-32 111.7 0.7 4.5e-32 111.2 0.7 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|313125935|ref|YP_004036205.1| - 8.7e-20 70.2 0.0 2.3e-19 68.9 0.0 1.8 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.8 gi|313125935|ref|YP_004036205.1| - 0.049 13.7 0.0 0.47 10.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) NAD_binding_10 PF13460.6 gi|313125935|ref|YP_004036205.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding GYD PF08734.11 gi|313125936|ref|YP_004036206.1| - 9.9e-13 47.9 0.0 1.1e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 GYD domain Acetyltransf_10 PF13673.7 gi|313125937|ref|YP_004036207.1| - 5e-14 52.3 0.1 6.5e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313125937|ref|YP_004036207.1| - 4.7e-13 49.4 0.1 7.4e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313125937|ref|YP_004036207.1| - 5.6e-13 49.2 0.4 7.7e-13 48.7 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|313125937|ref|YP_004036207.1| - 1.6e-10 40.8 0.0 2.8e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|313125937|ref|YP_004036207.1| - 0.0078 16.3 0.1 0.032 14.3 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313125937|ref|YP_004036207.1| - 0.0085 16.2 0.1 0.016 15.3 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|313125937|ref|YP_004036207.1| - 0.034 14.3 0.0 0.06 13.5 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|313125937|ref|YP_004036207.1| - 0.096 12.4 0.4 0.3 10.8 0.4 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.6 gi|313125937|ref|YP_004036207.1| - 0.52 10.8 2.0 1.1 9.7 2.0 1.5 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Archease PF01951.16 gi|313125938|ref|YP_004036208.1| - 6.1e-35 120.5 0.2 6.8e-35 120.3 0.2 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DoxX PF07681.12 gi|313125939|ref|YP_004036209.1| - 3.3e-08 34.0 7.7 3.3e-08 34.0 7.7 3.9 4 1 1 5 5 5 2 DoxX VKG_Carbox PF05090.14 gi|313125939|ref|YP_004036209.1| - 0.066 12.0 1.3 0.13 11.1 0.0 2.0 2 0 0 2 2 2 0 Vitamin K-dependent gamma-carboxylase DoxD PF04173.13 gi|313125939|ref|YP_004036209.1| - 0.067 13.1 10.0 8.2 6.3 0.6 3.8 3 1 0 3 3 3 0 TQO small subunit DoxD RtcB PF01139.17 gi|313125940|ref|YP_004036210.1| - 3.1e-155 517.4 0.0 3.5e-155 517.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF1634 PF07843.11 gi|313125941|ref|YP_004036211.1| - 0.03 14.4 0.3 0.17 12.0 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1634) zf-Mss51 PF13824.6 gi|313125942|ref|YP_004036212.1| - 0.031 14.4 0.4 0.11 12.7 0.1 2.0 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|313125942|ref|YP_004036212.1| - 0.033 13.6 0.5 0.075 12.5 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|313125942|ref|YP_004036212.1| - 0.11 12.9 0.1 0.17 12.3 0.1 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|313125942|ref|YP_004036212.1| - 0.13 12.1 0.3 0.35 10.6 0.3 1.7 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 gi|313125942|ref|YP_004036212.1| - 0.23 11.2 0.1 0.23 11.2 0.1 2.0 3 0 0 3 3 3 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|313125942|ref|YP_004036212.1| - 2.6 7.7 5.0 0.32 10.7 0.4 1.8 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain HAD_2 PF13419.6 gi|313125943|ref|YP_004036213.1| - 4.1e-13 49.8 0.0 1.9e-11 44.4 0.0 2.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313125943|ref|YP_004036213.1| - 2.4e-07 31.3 2.7 0.00016 22.0 0.1 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313125943|ref|YP_004036213.1| - 6.7e-06 26.1 0.1 1.2e-05 25.2 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|313125943|ref|YP_004036213.1| - 0.14 12.6 4.3 4.2 7.7 4.3 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_1 PF00441.24 gi|313125944|ref|YP_004036214.1| - 3.3e-53 179.9 2.6 4.8e-53 179.4 2.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313125944|ref|YP_004036214.1| - 7.8e-35 119.9 0.1 1.9e-34 118.7 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313125944|ref|YP_004036214.1| - 4.7e-24 84.4 0.0 1.2e-23 83.1 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313125944|ref|YP_004036214.1| - 9.5e-24 84.2 3.4 9.5e-24 84.2 3.4 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HTH_Tnp_Tc3_1 PF11427.8 gi|313125944|ref|YP_004036214.1| - 0.08 12.8 0.0 17 5.3 0.0 2.6 2 0 0 2 2 2 0 Tc3 transposase DHHA1 PF02272.19 gi|313125945|ref|YP_004036215.1| - 7.4e-14 52.3 1.9 1.5e-13 51.3 1.9 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|313125945|ref|YP_004036215.1| - 1.3e-11 44.4 0.0 2.2e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|313125945|ref|YP_004036215.1| - 3e-10 39.2 0.0 4.8e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_31 PF13560.6 gi|313125946|ref|YP_004036216.1| - 3.8e-06 27.1 1.3 6.2e-06 26.5 0.5 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|313125946|ref|YP_004036216.1| - 0.00052 20.0 0.0 0.00078 19.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|313125946|ref|YP_004036216.1| - 0.023 14.6 0.1 0.053 13.5 0.1 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_3 PF01381.22 gi|313125946|ref|YP_004036216.1| - 0.066 13.3 0.4 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix HTH_25 PF13413.6 gi|313125946|ref|YP_004036216.1| - 0.092 12.6 0.5 0.23 11.4 0.2 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain zf-C4_ClpX PF06689.13 gi|313125946|ref|YP_004036216.1| - 0.16 11.9 0.1 0.27 11.1 0.1 1.3 1 0 0 1 1 1 0 ClpX C4-type zinc finger Zn-ribbon_8 PF09723.10 gi|313125946|ref|YP_004036216.1| - 0.16 12.1 0.6 0.32 11.1 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain GrpB PF04229.14 gi|313125947|ref|YP_004036217.1| - 1.3e-46 158.8 0.0 1.4e-46 158.6 0.0 1.0 1 0 0 1 1 1 1 GrpB protein MHB PF16525.5 gi|313125947|ref|YP_004036217.1| - 0.1 12.8 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Haemophore, haem-binding DUF420 PF04238.12 gi|313125948|ref|YP_004036218.1| - 1.4e-34 119.2 9.2 1.4e-34 119.2 9.2 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|313125948|ref|YP_004036218.1| - 1.9e-06 28.1 7.1 2.2e-05 24.7 1.9 2.4 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) DUF1240 PF06836.12 gi|313125948|ref|YP_004036218.1| - 0.0068 16.9 0.2 0.0068 16.9 0.2 2.2 2 1 2 4 4 4 1 Protein of unknown function (DUF1240) IncD PF17628.2 gi|313125948|ref|YP_004036218.1| - 0.11 12.3 3.1 0.23 11.2 3.1 1.5 1 0 0 1 1 1 0 Inclusion membrane protein D Otopetrin PF03189.13 gi|313125948|ref|YP_004036218.1| - 0.67 8.7 5.2 0.073 11.9 1.4 1.4 2 0 0 2 2 2 0 Otopetrin Cu-oxidase_2 PF07731.14 gi|313125949|ref|YP_004036219.1| - 4.3e-29 101.0 13.3 2.5e-18 66.2 3.1 3.0 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|313125949|ref|YP_004036219.1| - 9.3e-22 77.3 6.1 1.1e-17 64.2 1.1 2.5 2 0 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|313125949|ref|YP_004036219.1| - 3.7e-14 53.2 0.1 2.9e-13 50.2 0.0 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|313125949|ref|YP_004036219.1| - 3.4e-05 23.9 0.0 0.15 12.2 0.0 2.7 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|313125949|ref|YP_004036219.1| - 0.00043 20.0 1.8 0.00043 20.0 1.8 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Self-incomp_S1 PF05938.11 gi|313125949|ref|YP_004036219.1| - 0.13 12.9 0.0 0.95 10.0 0.0 2.1 2 0 0 2 2 2 0 Plant self-incompatibility protein S1 Copper-bind PF00127.20 gi|313125951|ref|YP_004036221.1| - 2e-33 114.7 6.7 1.5e-16 60.7 0.7 3.3 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313125951|ref|YP_004036221.1| - 6.3e-09 35.9 0.0 0.0017 18.5 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.20 gi|313125951|ref|YP_004036221.1| - 0.004 17.0 13.4 0.023 14.5 0.4 3.3 3 1 0 3 3 3 2 PKD domain DUF2924 PF11149.8 gi|313125951|ref|YP_004036221.1| - 0.031 14.7 0.2 7.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) LRRNT_2 PF08263.12 gi|313125951|ref|YP_004036221.1| - 0.31 11.4 2.8 14 6.0 0.4 2.8 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain GATase_7 PF13537.6 gi|313125952|ref|YP_004036222.1| - 8.2e-21 74.2 0.0 4.6e-20 71.8 0.0 2.1 3 0 0 3 3 3 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|313125952|ref|YP_004036222.1| - 8.2e-20 71.4 0.0 3.3e-19 69.4 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|313125952|ref|YP_004036222.1| - 4.2e-07 29.6 0.1 8.1e-07 28.7 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|313125952|ref|YP_004036222.1| - 0.0021 17.0 0.0 0.0039 16.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.19 gi|313125953|ref|YP_004036223.1| - 1.1e-22 79.9 11.2 1.2e-22 79.8 11.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e Ribosomal_L32p PF01783.23 gi|313125953|ref|YP_004036223.1| - 0.0022 18.2 2.1 0.003 17.8 2.1 1.3 1 0 0 1 1 1 1 Ribosomal L32p protein family DZR PF12773.7 gi|313125953|ref|YP_004036223.1| - 0.011 15.8 2.7 0.014 15.4 2.7 1.1 1 0 0 1 1 1 0 Double zinc ribbon zf-piccolo PF05715.13 gi|313125953|ref|YP_004036223.1| - 0.014 15.5 3.4 0.043 14.0 3.4 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger HypA PF01155.19 gi|313125953|ref|YP_004036223.1| - 0.081 12.9 1.9 0.09 12.8 1.9 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|313125953|ref|YP_004036223.1| - 0.09 12.5 6.5 0.61 9.9 0.6 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|313125953|ref|YP_004036223.1| - 0.11 11.9 2.7 5.3 6.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|313125953|ref|YP_004036223.1| - 0.3 10.9 4.9 3.1 7.6 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|313125953|ref|YP_004036223.1| - 0.73 9.8 5.3 1.2 9.1 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit YhfH PF14149.6 gi|313125953|ref|YP_004036223.1| - 2 8.5 6.8 3.4 7.7 0.5 2.2 1 1 1 2 2 2 0 YhfH-like protein LSM PF01423.22 gi|313125954|ref|YP_004036224.1| - 1.9e-15 56.3 0.1 3.3e-15 55.5 0.1 1.4 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|313125954|ref|YP_004036224.1| - 2.1e-06 27.7 0.0 2.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain HATPase_c PF02518.26 gi|313125955|ref|YP_004036225.1| - 1.3e-15 57.9 0.0 2.3e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|313125955|ref|YP_004036225.1| - 7e-12 45.5 0.0 2.7e-11 43.6 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|313125955|ref|YP_004036225.1| - 1e-09 38.6 2.4 1.2e-09 38.4 0.8 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|313125955|ref|YP_004036225.1| - 3.3e-08 33.5 0.1 6.2e-08 32.7 0.1 1.5 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|313125955|ref|YP_004036225.1| - 0.0019 18.2 0.0 0.006 16.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA_4TM PF16926.5 gi|313125955|ref|YP_004036225.1| - 0.0026 17.3 0.2 0.0047 16.5 0.2 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_3 PF08447.12 gi|313125955|ref|YP_004036225.1| - 0.0043 17.3 0.1 0.0096 16.2 0.1 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|313125955|ref|YP_004036225.1| - 0.0064 16.5 0.8 0.017 15.2 0.8 1.8 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|313125955|ref|YP_004036225.1| - 0.0071 16.3 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|313125955|ref|YP_004036225.1| - 0.079 13.2 0.1 1.1 9.6 0.0 2.5 2 0 0 2 2 2 0 GAF domain Lactamase_B_2 PF12706.7 gi|313125956|ref|YP_004036226.1| - 5.8e-08 32.5 2.0 1.6e-06 27.8 0.2 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313125956|ref|YP_004036226.1| - 9.9e-08 32.2 2.4 3e-07 30.6 2.4 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|313125956|ref|YP_004036226.1| - 0.00082 19.3 0.8 0.033 14.1 0.1 2.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|313125957|ref|YP_004036227.1| - 3.1e-66 223.0 0.4 3.8e-66 222.8 0.4 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Endotoxin_C2 PF18449.1 gi|313125957|ref|YP_004036227.1| - 0.061 13.7 0.6 0.15 12.4 0.6 1.7 1 0 0 1 1 1 0 Delta endotoxin tRNA-synt_1c PF00749.21 gi|313125958|ref|YP_004036228.1| - 1.5e-59 201.5 0.0 1.9e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|313125958|ref|YP_004036228.1| - 5.8e-18 65.4 0.0 1.7e-17 63.9 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Cyclase PF04199.13 gi|313125959|ref|YP_004036229.1| - 8.7e-21 74.6 0.2 1.3e-20 74.0 0.2 1.3 1 0 0 1 1 1 1 Putative cyclase DUF2116 PF09889.9 gi|313125960|ref|YP_004036230.1| - 0.13 12.2 0.5 0.21 11.6 0.5 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RseC_MucC PF04246.12 gi|313125960|ref|YP_004036230.1| - 0.5 10.3 1.9 0.56 10.2 1.9 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF456 PF04306.13 gi|313125961|ref|YP_004036231.1| - 1e-26 93.9 24.8 1e-26 93.9 24.8 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF456) Fer4_7 PF12838.7 gi|313125962|ref|YP_004036232.1| - 1.2e-13 51.4 21.5 5.4e-08 33.3 7.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313125962|ref|YP_004036232.1| - 3.5e-13 48.8 13.3 1.3e-07 31.1 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|313125962|ref|YP_004036232.1| - 8.3e-09 35.5 4.1 2.2e-08 34.1 4.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313125962|ref|YP_004036232.1| - 7.4e-08 32.1 14.1 2.2e-05 24.3 5.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|313125962|ref|YP_004036232.1| - 9.9e-08 32.0 11.0 1e-06 28.8 10.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313125962|ref|YP_004036232.1| - 1.3e-07 31.6 18.0 1e-05 25.6 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313125962|ref|YP_004036232.1| - 3e-06 28.1 4.2 0.00035 21.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|313125962|ref|YP_004036232.1| - 1.8e-05 25.2 2.3 0.052 14.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|313125962|ref|YP_004036232.1| - 3e-05 23.9 10.3 0.0058 16.7 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|313125962|ref|YP_004036232.1| - 4.1e-05 23.9 5.3 0.00018 21.9 5.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|313125962|ref|YP_004036232.1| - 0.0005 20.3 5.0 0.00052 20.2 1.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|313125962|ref|YP_004036232.1| - 0.0005 20.8 11.1 0.0025 18.6 4.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|313125962|ref|YP_004036232.1| - 0.00053 20.3 7.5 0.0015 18.9 2.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|313125962|ref|YP_004036232.1| - 0.0014 19.1 13.5 0.019 15.5 13.5 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I DUF4969 PF16339.5 gi|313125962|ref|YP_004036232.1| - 0.033 14.5 0.0 0.058 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) Fer4_22 PF17179.4 gi|313125962|ref|YP_004036232.1| - 0.065 14.1 3.7 6.1 7.8 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|313125962|ref|YP_004036232.1| - 0.35 11.6 16.8 5.8 7.7 16.8 2.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain ETF PF01012.21 gi|313125963|ref|YP_004036233.1| - 8.4e-41 139.8 0.2 1.2e-40 139.4 0.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Ub-Mut7C PF14451.6 gi|313125963|ref|YP_004036233.1| - 0.099 12.5 0.0 0.61 10.0 0.0 2.2 2 0 0 2 2 2 0 Mut7-C ubiquitin ETF_alpha PF00766.19 gi|313125964|ref|YP_004036234.1| - 7.4e-27 93.2 0.5 1.8e-26 92.0 0.5 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|313125964|ref|YP_004036234.1| - 3.6e-17 62.8 0.0 1.2e-16 61.1 0.0 1.9 1 1 0 1 1 1 1 Electron transfer flavoprotein domain MctB PF11382.8 gi|313125964|ref|YP_004036234.1| - 0.024 14.4 1.5 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB FAD_binding_3 PF01494.19 gi|313125965|ref|YP_004036235.1| - 2.4e-12 46.8 2.2 2.3e-11 43.6 2.2 2.2 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313125965|ref|YP_004036235.1| - 1.5e-07 30.9 2.0 0.00014 21.2 0.2 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|313125965|ref|YP_004036235.1| - 3.4e-06 26.7 0.6 5.1e-06 26.1 0.6 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|313125965|ref|YP_004036235.1| - 6.8e-06 25.9 6.9 0.0024 17.5 3.8 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|313125965|ref|YP_004036235.1| - 1.3e-05 25.4 1.9 5.8e-05 23.2 1.9 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|313125965|ref|YP_004036235.1| - 4e-05 22.9 4.5 0.00013 21.2 1.9 2.3 2 1 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|313125965|ref|YP_004036235.1| - 0.00015 21.1 0.4 0.0003 20.1 0.4 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|313125965|ref|YP_004036235.1| - 0.0012 17.6 1.9 0.0023 16.7 1.9 1.4 1 0 0 1 1 1 1 HI0933-like protein ETF_QO PF05187.13 gi|313125965|ref|YP_004036235.1| - 0.0014 18.8 0.1 0.0023 18.0 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Pyr_redox_3 PF13738.6 gi|313125965|ref|YP_004036235.1| - 0.0019 17.5 1.2 0.0036 16.6 1.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|313125965|ref|YP_004036235.1| - 0.0026 16.7 0.5 0.16 10.8 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.22 gi|313125965|ref|YP_004036235.1| - 0.0094 15.1 2.8 0.064 12.3 4.0 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|313125965|ref|YP_004036235.1| - 0.013 16.0 2.2 0.79 10.3 0.9 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_2 PF12797.7 gi|313125965|ref|YP_004036235.1| - 4.1 7.7 5.7 0.36 11.0 0.6 1.9 2 0 0 2 2 2 0 4Fe-4S binding domain Acetyltransf_1 PF00583.25 gi|313125967|ref|YP_004036237.1| - 6.1e-13 49.0 0.1 1e-12 48.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|313125967|ref|YP_004036237.1| - 2.1e-10 41.0 0.0 3.3e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313125967|ref|YP_004036237.1| - 1.8e-07 31.1 0.1 3.3e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313125967|ref|YP_004036237.1| - 5.2e-06 26.8 0.0 1.1e-05 25.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313125967|ref|YP_004036237.1| - 0.00088 20.0 0.1 0.0016 19.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Fe_dep_repress PF01325.19 gi|313125967|ref|YP_004036237.1| - 0.0018 18.5 0.0 0.0042 17.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Acetyltransf_CG PF14542.6 gi|313125967|ref|YP_004036237.1| - 0.0028 17.8 0.0 0.0078 16.3 0.0 1.8 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase LexA_DNA_bind PF01726.16 gi|313125967|ref|YP_004036237.1| - 0.023 14.5 0.0 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Adeno_E4 PF05385.11 gi|313125967|ref|YP_004036237.1| - 0.035 14.2 0.2 0.083 13.0 0.0 1.7 2 0 0 2 2 2 0 Mastadenovirus early E4 13 kDa protein DUF762 PF05555.11 gi|313125967|ref|YP_004036237.1| - 0.04 13.5 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF762) DprA_WH PF17782.1 gi|313125967|ref|YP_004036237.1| - 0.04 14.0 0.0 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 DprA winged helix domain Acetyltransf_9 PF13527.7 gi|313125967|ref|YP_004036237.1| - 0.082 13.0 0.0 0.18 11.8 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Ish1 PF10281.9 gi|313125967|ref|YP_004036237.1| - 0.088 13.1 0.2 22 5.5 0.0 3.2 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein SH3_16 PF18348.1 gi|313125967|ref|YP_004036237.1| - 0.15 11.8 0.5 19 5.1 0.0 3.2 3 1 0 3 3 3 0 Bacterial dipeptidyl-peptidase Sh3 domain ETC_C1_NDUFA4 PF04800.12 gi|313125967|ref|YP_004036237.1| - 0.16 12.2 0.2 0.76 10.1 0.0 2.3 3 0 0 3 3 2 0 ETC complex I subunit conserved region Helicase_RecD PF05127.14 gi|313125969|ref|YP_004036239.1| - 1.5e-46 158.5 0.0 2.4e-46 157.8 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|313125969|ref|YP_004036239.1| - 4.4e-44 150.6 0.1 2.1e-27 96.0 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|313125969|ref|YP_004036239.1| - 7.8e-25 86.6 0.0 5.4e-24 84.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|313125969|ref|YP_004036239.1| - 2.7e-05 24.0 0.4 5.7e-05 22.9 0.4 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313125969|ref|YP_004036239.1| - 0.0061 17.0 1.3 0.33 11.3 0.1 3.0 3 0 0 3 3 3 1 AAA ATPase domain zf-HC2 PF13490.6 gi|313125969|ref|YP_004036239.1| - 0.058 13.7 0.3 0.3 11.4 0.0 2.5 2 0 0 2 2 2 0 Putative zinc-finger Ribosomal_L7Ae PF01248.26 gi|313125970|ref|YP_004036240.1| - 4.2e-25 87.3 0.1 4.9e-25 87.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|313125970|ref|YP_004036240.1| - 0.00016 21.5 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|313125970|ref|YP_004036240.1| - 0.0031 18.0 0.3 0.0044 17.5 0.3 1.4 1 1 1 2 2 2 1 eRF1 domain 3 DUF1269 PF06897.12 gi|313125970|ref|YP_004036240.1| - 0.0037 17.5 0.9 1.5 9.1 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.18 gi|313125971|ref|YP_004036241.1| - 6.5e-28 96.5 0.8 7.2e-28 96.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|313125972|ref|YP_004036242.1| - 7.3e-19 67.8 0.0 7.8e-19 67.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e NDK PF00334.19 gi|313125973|ref|YP_004036243.1| - 5e-57 191.7 0.0 5.7e-57 191.5 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Meth_synt_2 PF01717.18 gi|313125974|ref|YP_004036244.1| - 1.1e-55 189.3 0.0 1.7e-55 188.6 0.0 1.3 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|313125974|ref|YP_004036244.1| - 4.5e-12 46.1 0.0 7.4e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|313125974|ref|YP_004036244.1| - 3.3e-05 23.2 0.0 4.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.12 gi|313125975|ref|YP_004036245.1| - 2.5e-12 47.0 0.0 8.1e-12 45.3 0.0 1.7 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|313125975|ref|YP_004036245.1| - 2.3e-08 33.7 0.1 6.4e-08 32.2 0.1 1.6 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain MTS PF05175.14 gi|313125976|ref|YP_004036246.1| - 3.7e-11 42.9 0.0 2e-10 40.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|313125976|ref|YP_004036246.1| - 3.8e-08 33.9 0.0 1.2e-07 32.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313125976|ref|YP_004036246.1| - 6.3e-08 33.2 0.0 8.9e-07 29.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|313125976|ref|YP_004036246.1| - 0.0003 20.5 0.0 0.0016 18.1 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|313125976|ref|YP_004036246.1| - 0.00042 21.0 0.0 0.0015 19.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313125976|ref|YP_004036246.1| - 0.00049 19.9 0.0 0.00064 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313125976|ref|YP_004036246.1| - 0.0022 17.9 0.1 0.0073 16.2 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|313125976|ref|YP_004036246.1| - 0.0048 16.6 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|313125976|ref|YP_004036246.1| - 0.0055 16.7 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NIF3 PF01784.18 gi|313125976|ref|YP_004036246.1| - 0.0068 16.1 0.0 0.0097 15.6 0.0 1.1 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) PrmA PF06325.13 gi|313125976|ref|YP_004036246.1| - 0.0081 15.6 0.0 0.015 14.7 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|313125976|ref|YP_004036246.1| - 0.036 13.8 0.0 0.064 13.0 0.0 1.4 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|313125976|ref|YP_004036246.1| - 0.13 11.7 0.0 0.4 10.1 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase MS_channel PF00924.18 gi|313125977|ref|YP_004036247.1| - 2.9e-50 170.7 0.3 2.9e-50 170.7 0.3 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF4271 PF14093.6 gi|313125977|ref|YP_004036247.1| - 0.21 11.5 2.1 0.3 10.9 2.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) DUF1700 PF08006.11 gi|313125977|ref|YP_004036247.1| - 3.8 7.0 7.5 0.33 10.5 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) UPF0182 PF03699.13 gi|313125977|ref|YP_004036247.1| - 3.8 5.5 5.2 1.6 6.8 3.0 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0182) RrnaAD PF00398.20 gi|313125978|ref|YP_004036248.1| - 3.7e-49 167.2 0.0 4.7e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|313125978|ref|YP_004036248.1| - 2.4e-05 24.9 0.0 5.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313125978|ref|YP_004036248.1| - 0.001 19.6 0.0 0.0022 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|313125978|ref|YP_004036248.1| - 0.0031 17.1 0.0 0.0053 16.4 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Spermine_synth PF01564.17 gi|313125978|ref|YP_004036248.1| - 0.0088 15.5 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Cons_hypoth95 PF03602.15 gi|313125978|ref|YP_004036248.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|313125978|ref|YP_004036248.1| - 0.017 15.8 0.0 0.041 14.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|313125978|ref|YP_004036248.1| - 0.067 13.5 0.4 0.31 11.3 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain MTS PF05175.14 gi|313125978|ref|YP_004036248.1| - 0.098 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|313125978|ref|YP_004036248.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF655 PF04919.12 gi|313125979|ref|YP_004036249.1| - 3.7e-65 219.3 0.3 4.4e-65 219.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|313125979|ref|YP_004036249.1| - 3.4e-05 24.0 0.0 7.8e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|313125979|ref|YP_004036249.1| - 0.00055 20.1 0.0 0.0018 18.5 0.0 1.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif DUF1473 PF07341.11 gi|313125979|ref|YP_004036249.1| - 0.035 13.9 0.2 0.069 12.9 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1473) HHH PF00633.23 gi|313125979|ref|YP_004036249.1| - 0.11 12.4 0.8 0.58 10.1 0.0 2.6 4 0 0 4 4 4 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|313125979|ref|YP_004036249.1| - 0.14 12.8 0.6 5.7 7.6 0.0 2.8 3 1 0 3 3 3 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|313125980|ref|YP_004036250.1| - 3.6e-14 53.1 2.5 4.4e-14 52.9 2.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 UPF0158 PF03682.13 gi|313125980|ref|YP_004036250.1| - 0.058 13.4 2.5 0.071 13.1 2.5 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0158) Ribosomal_L21e PF01157.18 gi|313125981|ref|YP_004036251.1| - 3.8e-33 113.4 0.3 4.1e-33 113.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Cys_Met_Meta_PP PF01053.20 gi|313125982|ref|YP_004036252.1| - 3.2e-152 506.5 0.0 3.6e-152 506.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|313125982|ref|YP_004036252.1| - 0.0017 17.4 0.0 0.0033 16.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|313125982|ref|YP_004036252.1| - 0.0027 17.1 0.1 0.017 14.4 0.1 1.9 1 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|313125982|ref|YP_004036252.1| - 0.018 14.3 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|313125982|ref|YP_004036252.1| - 0.026 13.0 0.0 0.036 12.6 0.0 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase MtrG PF04210.13 gi|313125983|ref|YP_004036253.1| - 0.039 13.8 0.5 0.096 12.6 0.5 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4396 PF14342.6 gi|313125983|ref|YP_004036253.1| - 0.044 14.1 2.2 0.054 13.9 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) TMEM65 PF10507.9 gi|313125983|ref|YP_004036253.1| - 0.11 12.4 3.1 2 8.4 2.1 2.1 1 1 1 2 2 2 0 Transmembrane protein 65 EF1_GNE PF00736.19 gi|313125984|ref|YP_004036254.1| - 9.3e-19 67.4 0.0 1e-18 67.3 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.26 gi|313125984|ref|YP_004036254.1| - 0.081 13.4 0.1 0.41 11.1 0.1 1.9 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.11 gi|313125985|ref|YP_004036255.1| - 0.00023 21.1 10.6 0.00091 19.1 4.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) C1_2 PF03107.16 gi|313125985|ref|YP_004036255.1| - 0.0036 17.6 10.8 0.27 11.6 2.4 2.1 1 1 1 2 2 2 2 C1 domain zf-CHY PF05495.12 gi|313125985|ref|YP_004036255.1| - 0.0041 17.6 11.1 0.013 16.0 5.9 2.0 1 1 1 2 2 2 2 CHY zinc finger DZR PF12773.7 gi|313125985|ref|YP_004036255.1| - 0.0042 17.1 12.4 0.21 11.6 12.4 2.2 1 1 0 1 1 1 1 Double zinc ribbon HscB_4_cys PF18256.1 gi|313125985|ref|YP_004036255.1| - 0.013 15.3 1.0 0.013 15.3 1.0 2.9 3 0 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif OrfB_Zn_ribbon PF07282.11 gi|313125985|ref|YP_004036255.1| - 0.023 14.6 8.2 0.21 11.6 1.7 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Rhodanese_C PF12368.8 gi|313125985|ref|YP_004036255.1| - 0.047 14.1 10.1 0.052 13.9 10.1 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal UPF0547 PF10571.9 gi|313125985|ref|YP_004036255.1| - 0.17 12.0 16.4 1.5 9.0 0.1 3.4 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 gi|313125985|ref|YP_004036255.1| - 0.22 11.2 12.1 1.1 8.9 0.0 3.4 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zinc-ribbons_6 PF07191.12 gi|313125985|ref|YP_004036255.1| - 0.22 11.5 11.7 1.1 9.2 11.7 1.9 1 1 0 1 1 1 0 zinc-ribbons NMDAR2_C PF10565.9 gi|313125985|ref|YP_004036255.1| - 0.29 10.0 8.1 0.3 9.9 8.1 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf_UBZ PF18439.1 gi|313125985|ref|YP_004036255.1| - 0.31 10.7 0.5 0.31 10.7 0.5 3.8 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|313125985|ref|YP_004036255.1| - 0.34 10.9 11.6 0.47 10.5 1.0 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|313125985|ref|YP_004036255.1| - 0.51 10.5 12.8 3 8.0 8.1 2.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|313125985|ref|YP_004036255.1| - 0.54 9.8 12.4 9 5.9 0.3 3.7 3 1 0 3 3 3 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|313125985|ref|YP_004036255.1| - 0.63 7.8 7.6 0.67 7.7 7.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 C1_1 PF00130.22 gi|313125985|ref|YP_004036255.1| - 1 9.3 10.0 0.69 9.8 0.7 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) NMD3 PF04981.13 gi|313125985|ref|YP_004036255.1| - 1.2 8.6 9.2 1.2 8.5 9.2 1.0 1 0 0 1 1 1 0 NMD3 family Zn_Tnp_IS91 PF14319.6 gi|313125985|ref|YP_004036255.1| - 1.3 9.1 10.4 3.1 7.9 10.4 1.6 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn_ribbon_SprT PF17283.2 gi|313125985|ref|YP_004036255.1| - 2.4 8.1 13.8 9.3 6.3 0.1 4.0 3 1 0 3 3 3 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|313125985|ref|YP_004036255.1| - 3 8.0 16.4 2.9 8.1 2.9 2.8 1 1 2 3 3 3 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|313125985|ref|YP_004036255.1| - 3.7 7.4 13.9 3.8 7.3 0.1 3.9 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-HYPF PF07503.12 gi|313125985|ref|YP_004036255.1| - 4 7.3 12.0 10 6.0 8.1 2.4 2 1 0 2 2 2 0 HypF finger NRDD PF13597.6 gi|313125985|ref|YP_004036255.1| - 4.8 5.8 10.6 3.6 6.3 6.6 1.9 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase DUF2387 PF09526.10 gi|313125985|ref|YP_004036255.1| - 8.6 6.6 11.3 4.3 7.5 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.6 gi|313125985|ref|YP_004036255.1| - 8.8 6.2 15.4 26 4.7 0.2 3.9 1 1 4 5 5 5 0 zinc-ribbon domain TctA PF01970.16 gi|313125986|ref|YP_004036256.1| - 1.9e-63 214.6 34.0 2.2e-63 214.4 34.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DRTGG PF07085.12 gi|313125986|ref|YP_004036256.1| - 0.078 12.8 0.1 0.19 11.5 0.1 1.6 1 0 0 1 1 1 0 DRTGG domain Ribosomal_60s PF00428.19 gi|313125987|ref|YP_004036257.1| - 1.4e-15 57.6 21.8 2.1e-15 57.1 21.8 1.3 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|313125987|ref|YP_004036257.1| - 0.015 13.9 3.7 0.017 13.7 3.7 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 NOA36 PF06524.12 gi|313125987|ref|YP_004036257.1| - 0.94 8.7 9.6 0.94 8.7 9.6 1.2 1 0 0 1 1 1 0 NOA36 protein PPP4R2 PF09184.11 gi|313125987|ref|YP_004036257.1| - 4.4 6.8 7.3 5.4 6.5 7.3 1.1 1 0 0 1 1 1 0 PPP4R2 DUF4746 PF15928.5 gi|313125987|ref|YP_004036257.1| - 5.5 6.3 6.7 7 6.0 6.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) SDA1 PF05285.12 gi|313125987|ref|YP_004036257.1| - 7.1 6.0 11.1 8.4 5.7 11.1 1.1 1 0 0 1 1 1 0 SDA1 Ribosomal_L10 PF00466.20 gi|313125988|ref|YP_004036258.1| - 2.4e-21 75.7 0.0 4.3e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|313125988|ref|YP_004036258.1| - 3e-15 56.0 0.0 5.4e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|313125988|ref|YP_004036258.1| - 0.001 19.6 13.2 0.001 19.6 13.2 1.9 2 0 0 2 2 2 1 60s Acidic ribosomal protein RNA_pol_3_Rpc31 PF11705.8 gi|313125988|ref|YP_004036258.1| - 0.015 15.5 9.0 0.02 15.1 9.0 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Cwf_Cwc_15 PF04889.12 gi|313125988|ref|YP_004036258.1| - 0.47 10.1 7.2 0.67 9.6 7.2 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2457 PF10446.9 gi|313125988|ref|YP_004036258.1| - 1.2 8.1 16.6 1.8 7.6 16.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CENP-B_dimeris PF09026.10 gi|313125988|ref|YP_004036258.1| - 8.9 6.8 16.7 17 5.9 16.7 1.4 1 0 0 1 1 1 0 Centromere protein B dimerisation domain Ribosomal_L1 PF00687.21 gi|313125989|ref|YP_004036259.1| - 3.8e-44 150.9 0.0 4.7e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family DUF3168 PF11367.8 gi|313125989|ref|YP_004036259.1| - 2.3 8.4 5.2 19 5.5 0.2 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF3168) Ribosomal_L11 PF00298.19 gi|313125990|ref|YP_004036260.1| - 5.9e-20 71.6 0.0 8e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|313125990|ref|YP_004036260.1| - 9.1e-20 70.3 0.0 1.4e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Peptidase_M42 PF05343.14 gi|313125991|ref|YP_004036261.1| - 9.1e-80 267.8 6.4 1e-79 267.6 6.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M18 PF02127.15 gi|313125991|ref|YP_004036261.1| - 4.1e-09 35.7 0.1 2.7e-06 26.5 0.1 2.3 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) GHMP_kinases_N PF00288.26 gi|313125993|ref|YP_004036263.1| - 9.8e-15 54.5 0.3 2.8e-14 53.1 0.3 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|313125993|ref|YP_004036263.1| - 9e-13 48.4 0.9 1.3e-11 44.6 0.2 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|313125993|ref|YP_004036263.1| - 5.2e-05 22.7 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|313125994|ref|YP_004036264.1| - 1.2e-38 133.1 4.1 1.4e-38 132.8 4.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Lactamase_B_2 PF12706.7 gi|313125995|ref|YP_004036265.1| - 3.7e-18 65.8 0.5 4.6e-18 65.5 0.5 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313125995|ref|YP_004036265.1| - 2.6e-09 37.4 3.8 6.2e-09 36.2 3.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|313125995|ref|YP_004036265.1| - 0.0062 16.4 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Poxvirus_B22R_C PF13168.6 gi|313125995|ref|YP_004036265.1| - 0.19 11.2 0.0 0.37 10.2 0.0 1.4 1 0 0 1 1 1 0 Poxvirus B22R protein C-terminal HalOD1 PF18545.1 gi|313125997|ref|YP_004036267.1| - 2e-23 82.4 1.1 2.5e-23 82.1 1.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DEAD_assoc PF08494.11 gi|313125998|ref|YP_004036268.1| - 1.6e-53 181.4 0.8 3.2e-53 180.4 0.8 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|313125998|ref|YP_004036268.1| - 4.3e-31 108.0 0.0 4.1e-30 104.9 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|313125998|ref|YP_004036268.1| - 1.5e-18 67.2 0.1 9.2e-18 64.6 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|313125998|ref|YP_004036268.1| - 2.4e-09 37.4 0.0 2.9e-08 33.9 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|313125998|ref|YP_004036268.1| - 0.0087 16.3 0.4 0.096 13.0 0.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|313125998|ref|YP_004036268.1| - 0.041 14.2 0.8 0.17 12.2 0.1 2.4 3 1 0 3 3 3 0 AAA domain DUF5312 PF17239.2 gi|313125998|ref|YP_004036268.1| - 0.049 12.0 0.1 0.14 10.5 0.0 1.7 3 0 0 3 3 3 0 Family of unknown function (DUF5312) DUF3040 PF11239.8 gi|313125999|ref|YP_004036269.1| - 0.0071 16.6 1.2 0.0072 16.6 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) CPP1-like PF11833.8 gi|313125999|ref|YP_004036269.1| - 0.13 11.9 0.7 0.13 11.9 0.7 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like HTH_3 PF01381.22 gi|313126000|ref|YP_004036270.1| - 0.011 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix Na_sulph_symp PF00939.19 gi|313126001|ref|YP_004036271.1| - 2.8e-79 267.4 27.7 3.8e-79 266.9 27.7 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|313126001|ref|YP_004036271.1| - 1e-31 110.3 54.2 9.1e-18 64.5 22.2 3.5 3 1 1 4 4 4 2 Citrate transporter DUF4440 PF14534.6 gi|313126002|ref|YP_004036272.1| - 3e-09 37.2 0.2 3.8e-09 36.9 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) S6PP_C PF08472.10 gi|313126002|ref|YP_004036272.1| - 1.3e-07 31.6 0.0 1.9e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Sucrose-6-phosphate phosphohydrolase C-terminal SnoaL_2 PF12680.7 gi|313126002|ref|YP_004036272.1| - 0.00072 20.2 1.7 0.0012 19.4 1.5 1.6 1 1 0 1 1 1 1 SnoaL-like domain AAA_12 PF13087.6 gi|313126003|ref|YP_004036273.1| - 4.8e-41 140.6 0.0 7.6e-41 139.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|313126003|ref|YP_004036273.1| - 5.4e-38 131.3 0.0 5.2e-19 69.0 0.1 2.9 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|313126003|ref|YP_004036273.1| - 2.2e-19 69.9 3.6 1.5e-18 67.2 1.1 2.6 2 0 0 2 2 2 1 AAA domain Dna2 PF08696.11 gi|313126003|ref|YP_004036273.1| - 1.5e-18 67.3 0.0 3.5e-16 59.6 0.0 2.2 1 1 1 2 2 2 1 DNA replication factor Dna2 AAA_19 PF13245.6 gi|313126003|ref|YP_004036273.1| - 2.7e-15 57.0 0.1 4.8e-14 52.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|313126003|ref|YP_004036273.1| - 1.2e-12 48.3 0.1 3.5e-12 46.8 0.0 1.8 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|313126003|ref|YP_004036273.1| - 4.9e-11 42.8 0.0 0.0033 17.2 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|313126003|ref|YP_004036273.1| - 1.4e-05 24.8 0.0 3.5e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.17 gi|313126003|ref|YP_004036273.1| - 1.6e-05 25.1 0.0 0.00021 21.4 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function DUF83 UvrD_C_2 PF13538.6 gi|313126003|ref|YP_004036273.1| - 1.7e-05 24.5 0.0 3.8e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.6 gi|313126003|ref|YP_004036273.1| - 3.2e-05 24.2 0.0 0.00033 20.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|313126003|ref|YP_004036273.1| - 0.00015 22.2 1.7 0.0004 20.8 0.3 2.6 2 1 0 2 2 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|313126003|ref|YP_004036273.1| - 0.00015 21.1 0.2 0.00063 19.1 0.0 2.0 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|313126003|ref|YP_004036273.1| - 0.00019 21.5 0.0 0.00032 20.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|313126003|ref|YP_004036273.1| - 0.0018 18.2 0.0 0.0048 16.8 0.0 1.7 1 0 0 1 1 1 1 Helicase AAA PF00004.29 gi|313126003|ref|YP_004036273.1| - 0.0033 17.9 0.0 0.0074 16.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PIF1 PF05970.14 gi|313126003|ref|YP_004036273.1| - 0.0083 15.3 0.0 0.27 10.4 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase YflT PF11181.8 gi|313126003|ref|YP_004036273.1| - 0.015 15.8 0.1 0.14 12.6 0.0 2.6 2 1 1 3 3 2 0 Heat induced stress protein YflT PhoH PF02562.16 gi|313126003|ref|YP_004036273.1| - 0.017 14.6 0.0 0.13 11.7 0.0 2.2 1 1 0 1 1 1 0 PhoH-like protein AAA_5 PF07728.14 gi|313126003|ref|YP_004036273.1| - 0.025 14.6 0.0 0.25 11.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|313126003|ref|YP_004036273.1| - 0.034 13.9 0.0 0.079 12.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|313126003|ref|YP_004036273.1| - 0.037 13.4 0.0 0.082 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|313126003|ref|YP_004036273.1| - 0.05 13.1 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|313126003|ref|YP_004036273.1| - 0.058 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313126003|ref|YP_004036273.1| - 0.061 12.9 0.0 0.42 10.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|313126003|ref|YP_004036273.1| - 0.061 13.5 0.0 0.23 11.6 0.0 2.0 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|313126003|ref|YP_004036273.1| - 0.072 12.7 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|313126003|ref|YP_004036273.1| - 0.077 12.0 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.12 gi|313126003|ref|YP_004036273.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain HHH_2 PF12826.7 gi|313126004|ref|YP_004036274.1| - 0.2 11.8 0.2 18 5.5 0.1 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Erythro_esteras PF05139.14 gi|313126005|ref|YP_004036275.1| - 1.4e-63 215.8 0.6 1.7e-63 215.6 0.6 1.0 1 0 0 1 1 1 1 Erythromycin esterase DUF1460 PF07313.12 gi|313126005|ref|YP_004036275.1| - 0.077 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1460) Atrophin-1 PF03154.15 gi|313126005|ref|YP_004036275.1| - 0.11 10.8 3.2 0.15 10.3 3.2 1.1 1 0 0 1 1 1 0 Atrophin-1 family DUF3915 PF13054.6 gi|313126005|ref|YP_004036275.1| - 0.45 10.5 4.2 0.79 9.7 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) BRD4_CDT PF17105.5 gi|313126005|ref|YP_004036275.1| - 2.5 7.7 7.3 6.4 6.5 7.3 1.7 1 0 0 1 1 1 0 C-terminal domain of bromodomain protein 4 DUF3225 PF11533.8 gi|313126006|ref|YP_004036276.1| - 6.3e-05 22.7 0.2 0.0003 20.5 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 gi|313126006|ref|YP_004036276.1| - 7.1e-05 23.1 2.5 0.00025 21.3 2.5 1.7 1 1 0 1 1 1 1 SnoaL-like domain Zincin_2 PF10103.9 gi|313126008|ref|YP_004036278.1| - 2.3e-62 211.2 2.4 1.7e-31 109.7 0.1 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase Glyoxalase_3 PF13468.6 gi|313126009|ref|YP_004036279.1| - 2.5e-22 79.8 0.5 2.4e-21 76.6 0.1 2.0 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|313126009|ref|YP_004036279.1| - 0.00035 20.8 0.0 0.0017 18.6 0.0 2.1 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ribosomal_S2 PF00318.20 gi|313126010|ref|YP_004036280.1| - 1.9e-24 86.1 0.1 1.9e-14 53.4 0.5 2.2 1 1 1 2 2 2 2 Ribosomal protein S2 SDA1 PF05285.12 gi|313126010|ref|YP_004036280.1| - 2.8 7.3 10.3 3 7.2 10.3 1.1 1 0 0 1 1 1 0 SDA1 Enolase_C PF00113.22 gi|313126011|ref|YP_004036281.1| - 3.8e-78 262.7 0.7 5.2e-78 262.3 0.7 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|313126011|ref|YP_004036281.1| - 3.2e-35 121.2 2.1 4.9e-35 120.6 0.2 2.3 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|313126011|ref|YP_004036281.1| - 3e-10 40.1 0.1 6.5e-10 39.0 0.1 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|313126011|ref|YP_004036281.1| - 5.3e-05 22.5 1.3 7.2e-05 22.1 0.1 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|313126012|ref|YP_004036282.1| - 3e-11 43.1 0.0 3.3e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|313126013|ref|YP_004036283.1| - 7.5e-28 96.6 0.3 8.2e-28 96.5 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|313126014|ref|YP_004036284.1| - 7.3e-32 110.4 0.1 8.3e-32 110.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|313126015|ref|YP_004036285.1| - 4.5e-09 36.6 0.4 7.9e-07 29.4 0.4 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 DUF3659 PF12396.8 gi|313126015|ref|YP_004036285.1| - 0.0023 17.8 1.6 0.7 9.9 0.4 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3659) Ribosomal_L18 PF17135.4 gi|313126016|ref|YP_004036286.1| - 4.3e-11 42.5 0.0 4.7e-11 42.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|313126016|ref|YP_004036286.1| - 2.5e-07 31.4 0.5 8.6e-07 29.7 0.5 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|313126017|ref|YP_004036287.1| - 8.7e-20 71.2 0.0 4.6e-19 68.9 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|313126017|ref|YP_004036287.1| - 2.6e-13 49.2 0.0 3.4e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|313126018|ref|YP_004036288.1| - 1.2e-49 167.3 2.0 1.5e-49 166.9 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|313126018|ref|YP_004036288.1| - 0.004 17.5 0.2 0.0059 17.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S4 PF01479.25 gi|313126019|ref|YP_004036289.1| - 1.5e-13 50.3 1.2 2.1e-12 46.5 0.1 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|313126019|ref|YP_004036289.1| - 0.0025 18.7 1.2 0.006 17.5 1.0 1.8 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|313126020|ref|YP_004036290.1| - 1.2e-43 148.5 5.5 1.4e-43 148.3 5.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|313126020|ref|YP_004036290.1| - 0.029 13.1 0.0 0.033 13.0 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) IMS_HHH PF11798.8 gi|313126020|ref|YP_004036290.1| - 0.18 12.2 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 IMS family HHH motif Thioredoxin PF00085.20 gi|313126021|ref|YP_004036291.1| - 6.3e-15 55.0 0.0 6.9e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|313126021|ref|YP_004036291.1| - 8.8e-05 22.4 0.0 0.00025 20.9 0.0 1.7 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|313126021|ref|YP_004036291.1| - 0.00014 22.3 0.0 0.0022 18.4 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|313126021|ref|YP_004036291.1| - 0.00094 19.2 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain OST3_OST6 PF04756.13 gi|313126021|ref|YP_004036291.1| - 0.0072 15.7 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|313126021|ref|YP_004036291.1| - 0.013 15.9 0.0 0.018 15.5 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) HyaE PF07449.11 gi|313126021|ref|YP_004036291.1| - 0.015 15.2 0.0 0.019 14.9 0.0 1.3 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_8 PF13905.6 gi|313126021|ref|YP_004036291.1| - 0.019 15.3 0.0 2.5 8.5 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin-like TrbC_Ftype PF09673.10 gi|313126021|ref|YP_004036291.1| - 0.026 14.6 0.0 0.029 14.4 0.0 1.3 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein KaiB PF07689.12 gi|313126021|ref|YP_004036291.1| - 0.056 13.2 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 KaiB domain Thioredoxin_9 PF14595.6 gi|313126021|ref|YP_004036291.1| - 0.15 11.9 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Radical_SAM PF04055.21 gi|313126022|ref|YP_004036292.1| - 3.3e-25 89.4 0.0 5.5e-25 88.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|313126022|ref|YP_004036292.1| - 6.4e-17 61.7 0.0 1.1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|313126022|ref|YP_004036292.1| - 1.6e-07 31.6 0.0 3e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|313126022|ref|YP_004036292.1| - 3e-05 24.1 0.0 5.6e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Nif11 PF07862.11 gi|313126022|ref|YP_004036292.1| - 0.12 12.7 0.1 2.7 8.4 0.0 2.8 3 0 0 3 3 3 0 Nif11 domain Cytochrom_C PF00034.21 gi|313126022|ref|YP_004036292.1| - 0.23 12.6 0.4 8.7 7.6 0.0 2.7 3 1 0 3 3 3 0 Cytochrome c ParA PF10609.9 gi|313126023|ref|YP_004036293.1| - 1.2e-100 336.0 0.0 1.6e-100 335.7 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|313126023|ref|YP_004036293.1| - 7.2e-14 52.0 0.0 5.8e-13 49.0 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|313126023|ref|YP_004036293.1| - 5.2e-11 42.8 0.9 5.3e-09 36.2 0.9 2.1 1 1 0 1 1 1 1 AAA domain FeS_assembly_P PF01883.19 gi|313126023|ref|YP_004036293.1| - 1.8e-09 37.6 1.0 3.4e-09 36.7 0.4 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein MipZ PF09140.11 gi|313126023|ref|YP_004036293.1| - 2.7e-07 30.2 0.0 3.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|313126023|ref|YP_004036293.1| - 3.8e-05 23.3 0.0 0.0096 15.4 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|313126023|ref|YP_004036293.1| - 0.00016 21.1 0.0 0.00024 20.5 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|313126023|ref|YP_004036293.1| - 0.00019 20.7 3.7 0.0008 18.7 1.1 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|313126023|ref|YP_004036293.1| - 0.00036 20.4 0.0 0.2 11.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|313126023|ref|YP_004036293.1| - 0.0041 16.7 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|313126023|ref|YP_004036293.1| - 0.031 13.8 0.3 0.31 10.5 0.1 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ DUF1610 PF07754.11 gi|313126023|ref|YP_004036293.1| - 0.079 12.9 0.2 0.59 10.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CLP1_P PF16575.5 gi|313126023|ref|YP_004036293.1| - 0.13 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|313126023|ref|YP_004036293.1| - 0.14 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase UDG PF03167.19 gi|313126025|ref|YP_004036295.1| - 1.3e-21 77.2 0.0 1.6e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF5336 PF17270.2 gi|313126026|ref|YP_004036296.1| - 0.0057 16.3 1.9 0.0057 16.3 1.9 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5336) DUF3487 PF11990.8 gi|313126026|ref|YP_004036296.1| - 0.024 14.5 4.1 0.029 14.3 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2207 PF09972.9 gi|313126026|ref|YP_004036296.1| - 0.029 13.1 2.7 0.029 13.2 2.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|313126026|ref|YP_004036296.1| - 0.044 13.8 10.3 0.048 13.7 10.3 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Herpes_LMP1 PF05297.11 gi|313126026|ref|YP_004036296.1| - 0.28 10.3 0.9 0.3 10.2 0.9 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) VirB3 PF05101.13 gi|313126026|ref|YP_004036296.1| - 0.29 11.4 5.2 0.36 11.1 5.2 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DUF2809 PF10990.8 gi|313126026|ref|YP_004036296.1| - 1 10.1 7.2 1.5 9.6 7.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2809) SdpI PF13630.6 gi|313126026|ref|YP_004036296.1| - 1.8 8.7 5.6 2.6 8.2 5.6 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2064 PF09837.9 gi|313126027|ref|YP_004036297.1| - 4.1e-06 26.6 0.0 9.6e-06 25.4 0.0 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|313126027|ref|YP_004036297.1| - 0.0057 15.9 0.0 0.45 9.7 0.0 2.1 1 1 0 2 2 2 2 Guanylyl transferase CofC like CTP_transf_3 PF02348.19 gi|313126027|ref|YP_004036297.1| - 0.014 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase PRK PF00485.18 gi|313126029|ref|YP_004036299.1| - 3.3e-49 167.3 0.0 4.1e-49 167.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|313126029|ref|YP_004036299.1| - 8.9e-07 29.0 0.2 1.6e-05 24.8 0.2 2.1 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|313126029|ref|YP_004036299.1| - 8.1e-05 23.2 0.4 0.00018 22.0 0.4 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|313126029|ref|YP_004036299.1| - 0.00024 20.8 0.8 0.017 14.8 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase Zeta_toxin PF06414.12 gi|313126029|ref|YP_004036299.1| - 0.00057 19.2 0.0 0.0012 18.1 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.27 gi|313126029|ref|YP_004036299.1| - 0.00081 19.9 0.1 0.0012 19.3 0.1 1.4 1 1 0 1 1 1 1 ABC transporter AAA_26 PF13500.6 gi|313126029|ref|YP_004036299.1| - 0.0022 17.8 0.3 0.37 10.6 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|313126029|ref|YP_004036299.1| - 0.0036 17.6 0.0 0.0064 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|313126029|ref|YP_004036299.1| - 0.0082 16.0 0.0 0.017 15.0 0.0 1.6 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein MobB PF03205.14 gi|313126029|ref|YP_004036299.1| - 0.016 15.1 0.6 0.2 11.6 0.2 2.5 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B T3SS_needle_reg PF09025.10 gi|313126029|ref|YP_004036299.1| - 0.021 14.8 0.1 0.038 14.0 0.1 1.4 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator AAA_28 PF13521.6 gi|313126029|ref|YP_004036299.1| - 0.022 15.0 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|313126029|ref|YP_004036299.1| - 0.023 15.1 3.8 2.5 8.6 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|313126029|ref|YP_004036299.1| - 0.041 14.0 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|313126029|ref|YP_004036299.1| - 0.071 12.8 0.6 0.93 9.2 0.3 2.1 1 1 1 2 2 2 0 AAA domain T2SSE PF00437.20 gi|313126029|ref|YP_004036299.1| - 0.097 11.7 0.9 0.15 11.1 0.2 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|313126029|ref|YP_004036299.1| - 0.13 12.8 1.2 0.2 12.1 1.2 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|313126029|ref|YP_004036299.1| - 0.14 11.3 0.6 0.33 10.1 0.3 1.7 2 0 0 2 2 2 0 NB-ARC domain Torsin PF06309.11 gi|313126029|ref|YP_004036299.1| - 0.17 12.0 0.1 0.45 10.6 0.0 1.7 1 1 0 1 1 1 0 Torsin DUF87 PF01935.17 gi|313126029|ref|YP_004036299.1| - 0.39 10.8 2.9 0.47 10.5 1.1 1.9 1 1 1 2 2 2 0 Helicase HerA, central domain Peripla_BP_6 PF13458.6 gi|313126030|ref|YP_004036300.1| - 7.7e-26 91.6 7.7 9.8e-20 71.5 1.3 2.5 2 1 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|313126030|ref|YP_004036300.1| - 1.8e-17 63.5 0.6 1.4e-12 47.4 0.5 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|313126030|ref|YP_004036300.1| - 0.00056 19.0 0.1 0.0031 16.6 0.1 2.1 2 0 0 2 2 2 1 Periplasmic binding protein domain UCR_Fe-S_N PF10399.9 gi|313126030|ref|YP_004036300.1| - 0.089 12.2 3.4 0.32 10.4 3.4 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|313126030|ref|YP_004036300.1| - 2.9 7.9 11.6 0.045 13.6 3.0 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence SdrD_B PF17210.3 gi|313126031|ref|YP_004036301.1| - 0.003 17.8 0.2 0.0082 16.4 0.2 1.7 1 0 0 1 1 1 1 SdrD B-like domain DUF756 PF05506.12 gi|313126031|ref|YP_004036301.1| - 0.017 16.0 0.2 0.09 13.7 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF756) ABC_tran PF00005.27 gi|313126032|ref|YP_004036302.1| - 7.3e-32 110.7 0.0 1.1e-31 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126032|ref|YP_004036302.1| - 2.4e-10 40.7 0.0 0.00028 20.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313126032|ref|YP_004036302.1| - 8.8e-05 22.0 2.3 0.005 16.3 2.3 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313126032|ref|YP_004036302.1| - 0.00055 19.6 0.1 0.0011 18.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313126032|ref|YP_004036302.1| - 0.002 18.7 0.2 0.0034 17.9 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|313126032|ref|YP_004036302.1| - 0.0052 17.2 0.0 0.0077 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|313126032|ref|YP_004036302.1| - 0.0065 16.2 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|313126032|ref|YP_004036302.1| - 0.0077 16.0 0.3 0.0093 15.7 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|313126032|ref|YP_004036302.1| - 0.0082 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|313126032|ref|YP_004036302.1| - 0.012 15.7 0.3 0.017 15.2 0.3 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|313126032|ref|YP_004036302.1| - 0.015 14.5 0.2 0.023 13.9 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|313126032|ref|YP_004036302.1| - 0.019 15.2 0.2 0.14 12.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|313126032|ref|YP_004036302.1| - 0.02 14.9 0.0 0.066 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|313126032|ref|YP_004036302.1| - 0.029 14.3 0.1 0.063 13.2 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase Zeta_toxin PF06414.12 gi|313126032|ref|YP_004036302.1| - 0.043 13.1 0.0 0.09 12.0 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin MutS_V PF00488.21 gi|313126032|ref|YP_004036302.1| - 0.056 13.5 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 MutS domain V AAA PF00004.29 gi|313126032|ref|YP_004036302.1| - 0.072 13.5 0.2 0.28 11.6 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|313126032|ref|YP_004036302.1| - 0.097 12.8 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|313126032|ref|YP_004036302.1| - 0.12 11.8 0.1 0.28 10.5 0.0 1.6 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|313126032|ref|YP_004036302.1| - 0.15 12.3 1.1 0.73 10.1 1.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|313126032|ref|YP_004036302.1| - 0.15 12.4 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|313126032|ref|YP_004036302.1| - 0.18 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|313126033|ref|YP_004036303.1| - 1.5e-31 109.7 0.0 2e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126033|ref|YP_004036303.1| - 7.4e-12 45.7 4.5 1.5e-06 28.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|313126033|ref|YP_004036303.1| - 2.4e-10 40.1 0.1 4.9e-10 39.1 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|313126033|ref|YP_004036303.1| - 2.3e-05 25.0 0.0 3.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|313126033|ref|YP_004036303.1| - 5.8e-05 22.8 0.5 0.00012 21.8 0.5 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|313126033|ref|YP_004036303.1| - 0.0007 19.5 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 MukB N-terminal SMC_N PF02463.19 gi|313126033|ref|YP_004036303.1| - 0.0007 19.1 0.4 0.048 13.1 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|313126033|ref|YP_004036303.1| - 0.0026 17.5 0.1 0.0052 16.5 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|313126033|ref|YP_004036303.1| - 0.0068 16.8 0.1 0.15 12.5 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|313126033|ref|YP_004036303.1| - 0.012 15.0 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|313126033|ref|YP_004036303.1| - 0.07 13.0 0.1 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 gi|313126033|ref|YP_004036303.1| - 0.092 12.5 0.2 0.13 12.0 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|313126033|ref|YP_004036303.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|313126033|ref|YP_004036303.1| - 0.11 12.6 0.5 0.29 11.2 0.5 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_2 PF02653.16 gi|313126034|ref|YP_004036304.1| - 2.4e-41 141.7 30.0 2.4e-41 141.7 30.0 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|313126035|ref|YP_004036305.1| - 2.7e-34 118.6 45.1 2.7e-34 118.6 45.1 1.8 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Acetyltransf_1 PF00583.25 gi|313126036|ref|YP_004036306.1| - 4e-18 65.8 0.1 5e-18 65.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313126036|ref|YP_004036306.1| - 3.3e-14 53.0 0.1 4.9e-14 52.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313126036|ref|YP_004036306.1| - 1.5e-12 47.6 0.2 2e-12 47.1 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313126036|ref|YP_004036306.1| - 3.2e-09 36.6 0.3 1.1e-08 34.9 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|313126036|ref|YP_004036306.1| - 4.9e-06 26.6 0.1 6.9e-06 26.2 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|313126036|ref|YP_004036306.1| - 0.0002 21.1 0.1 0.0003 20.5 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|313126036|ref|YP_004036306.1| - 0.00024 21.2 0.0 0.00035 20.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|313126036|ref|YP_004036306.1| - 0.00068 19.3 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|313126036|ref|YP_004036306.1| - 0.0011 19.1 0.0 0.002 18.2 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|313126036|ref|YP_004036306.1| - 0.0012 19.6 0.1 0.0014 19.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|313126036|ref|YP_004036306.1| - 0.0036 17.2 0.0 0.0078 16.2 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase HalOD1 PF18545.1 gi|313126038|ref|YP_004036308.1| - 4.2e-21 75.0 0.0 4.5e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 AAA_33 PF13671.6 gi|313126039|ref|YP_004036309.1| - 3.5e-26 92.1 0.1 3.5e-26 92.1 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|313126039|ref|YP_004036309.1| - 2.9e-07 31.1 0.1 7.4e-07 29.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313126039|ref|YP_004036309.1| - 3.2e-07 29.8 0.8 1.3e-06 27.9 0.8 1.7 1 1 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 gi|313126039|ref|YP_004036309.1| - 8.1e-07 28.8 0.0 1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.6 gi|313126039|ref|YP_004036309.1| - 1.1e-06 29.1 0.1 2.4e-06 28.0 0.1 1.6 1 0 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|313126039|ref|YP_004036309.1| - 1.6e-05 24.3 1.6 0.026 13.8 0.9 2.2 1 1 0 2 2 2 2 6-phosphofructo-2-kinase AAA_22 PF13401.6 gi|313126039|ref|YP_004036309.1| - 0.0003 21.1 0.0 0.00044 20.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126039|ref|YP_004036309.1| - 0.0016 18.9 1.2 0.0022 18.4 1.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|313126039|ref|YP_004036309.1| - 0.0058 17.0 0.0 0.0099 16.3 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|313126039|ref|YP_004036309.1| - 0.039 13.8 0.1 0.061 13.2 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|313126039|ref|YP_004036309.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) T3SSipB PF16535.5 gi|313126041|ref|YP_004036311.1| - 0.0062 17.0 4.5 0.0062 17.0 4.5 2.0 2 0 0 2 2 2 1 Type III cell invasion protein SipB Exo84_C PF16528.5 gi|313126041|ref|YP_004036311.1| - 0.024 14.5 2.3 0.031 14.1 2.3 1.2 1 0 0 1 1 1 0 Exocyst component 84 C-terminal Rogdi_lz PF10259.9 gi|313126041|ref|YP_004036311.1| - 0.062 12.7 0.4 0.083 12.3 0.4 1.1 1 0 0 1 1 1 0 Rogdi leucine zipper containing protein DUF4972 PF16342.5 gi|313126041|ref|YP_004036311.1| - 0.079 12.6 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4972) DUF2968 PF11180.8 gi|313126041|ref|YP_004036311.1| - 0.38 10.4 13.6 0.13 11.9 10.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Efg1 PF10153.9 gi|313126041|ref|YP_004036311.1| - 0.52 10.7 7.7 0.87 10.0 0.5 2.3 2 0 0 2 2 2 0 rRNA-processing protein Efg1 GvpG PF05120.12 gi|313126041|ref|YP_004036311.1| - 4.8 7.3 5.9 7.9 6.6 4.7 1.9 2 0 0 2 2 2 0 Gas vesicle protein G FUSC PF04632.12 gi|313126041|ref|YP_004036311.1| - 7.6 4.9 6.3 9.4 4.6 6.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3450 PF11932.8 gi|313126041|ref|YP_004036311.1| - 8.2 5.7 12.9 0.48 9.7 7.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) MarR_2 PF12802.7 gi|313126042|ref|YP_004036312.1| - 0.013 15.4 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|313126042|ref|YP_004036312.1| - 0.025 15.0 0.0 0.074 13.5 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|313126042|ref|YP_004036312.1| - 0.097 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4307 PF14155.6 gi|313126042|ref|YP_004036312.1| - 0.15 11.9 2.9 1.3 8.8 0.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) Gram_pos_anchor PF00746.21 gi|313126042|ref|YP_004036312.1| - 0.68 9.9 2.7 1 9.4 0.0 2.5 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DZR PF12773.7 gi|313126043|ref|YP_004036313.1| - 0.00095 19.1 0.5 0.0012 18.8 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|313126043|ref|YP_004036313.1| - 0.018 14.4 0.6 4.5 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|313126043|ref|YP_004036313.1| - 0.023 14.6 1.1 0.081 12.9 1.1 1.8 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|313126043|ref|YP_004036313.1| - 0.024 14.8 1.9 0.053 13.6 1.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-ACC PF17848.1 gi|313126043|ref|YP_004036313.1| - 0.11 12.5 2.0 1.8 8.7 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain RecR PF02132.15 gi|313126043|ref|YP_004036313.1| - 0.2 11.3 2.0 0.43 10.2 2.0 1.6 1 1 0 1 1 1 0 RecR protein TrmB PF01978.19 gi|313126044|ref|YP_004036314.1| - 5.8e-05 22.9 0.1 7.5e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|313126044|ref|YP_004036314.1| - 0.1 13.1 0.1 0.12 12.9 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313126044|ref|YP_004036314.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain UbiA PF01040.18 gi|313126045|ref|YP_004036315.1| - 5.8e-21 74.9 25.9 5.8e-21 74.9 25.9 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family FAD_binding_2 PF00890.24 gi|313126046|ref|YP_004036316.1| - 7.3e-125 417.3 4.3 7.3e-125 417.3 4.3 1.6 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|313126046|ref|YP_004036316.1| - 3.2e-39 133.8 1.3 5.2e-39 133.2 1.3 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|313126046|ref|YP_004036316.1| - 1.8e-08 34.0 4.5 0.001 18.3 3.7 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313126046|ref|YP_004036316.1| - 1.1e-05 25.2 5.9 0.00033 20.4 5.1 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313126046|ref|YP_004036316.1| - 0.00047 19.0 1.9 0.00047 19.0 1.9 1.9 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|313126046|ref|YP_004036316.1| - 0.00057 19.1 3.1 0.00076 18.7 2.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|313126046|ref|YP_004036316.1| - 0.00073 19.0 4.0 0.00073 19.0 4.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|313126046|ref|YP_004036316.1| - 0.0038 16.5 3.2 0.018 14.3 0.5 2.9 4 0 0 4 4 4 1 Thi4 family Pyr_redox_3 PF13738.6 gi|313126046|ref|YP_004036316.1| - 0.0048 16.2 1.8 0.0075 15.6 0.5 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|313126046|ref|YP_004036316.1| - 0.0095 15.2 1.1 0.0095 15.2 1.1 1.8 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|313126046|ref|YP_004036316.1| - 0.021 14.1 1.6 0.028 13.7 0.5 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|313126046|ref|YP_004036316.1| - 0.028 14.8 0.5 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|313126046|ref|YP_004036316.1| - 0.041 14.1 0.3 0.21 11.9 0.3 2.3 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|313126046|ref|YP_004036316.1| - 0.054 14.1 0.9 0.37 11.4 0.6 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.6 gi|313126047|ref|YP_004036317.1| - 3.1e-33 114.0 0.1 1.4e-32 111.9 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|313126047|ref|YP_004036317.1| - 3.1e-12 46.8 4.6 3.1e-12 46.8 4.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313126047|ref|YP_004036317.1| - 1.4e-08 34.7 4.3 3.3e-08 33.5 4.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|313126047|ref|YP_004036317.1| - 1.4e-06 28.8 4.0 5.6e-06 26.8 4.0 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|313126047|ref|YP_004036317.1| - 0.00011 22.6 4.8 0.00011 22.6 4.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313126047|ref|YP_004036317.1| - 0.00062 19.9 9.8 0.0067 16.6 9.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|313126047|ref|YP_004036317.1| - 0.021 14.6 7.5 0.45 10.3 0.4 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF3043 PF11241.8 gi|313126047|ref|YP_004036317.1| - 0.28 11.2 6.1 0.74 9.8 6.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) Fer4_4 PF12800.7 gi|313126047|ref|YP_004036317.1| - 0.47 11.1 8.7 0.93 10.2 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313126047|ref|YP_004036317.1| - 0.96 10.4 16.4 0.35 11.8 8.4 3.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|313126047|ref|YP_004036317.1| - 2.2 8.3 9.7 6.1 6.8 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|313126047|ref|YP_004036317.1| - 3.8 8.7 11.9 2 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|313126047|ref|YP_004036317.1| - 6.3 7.0 7.8 9.6 6.5 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|313126047|ref|YP_004036317.1| - 6.6 7.0 10.1 1.2e+02 2.9 10.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|313126047|ref|YP_004036317.1| - 8.9 6.5 14.9 3.2 8.0 0.3 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Sdh_cyt PF01127.22 gi|313126048|ref|YP_004036318.1| - 2.1e-08 34.2 8.5 2.7e-08 33.9 8.5 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DctQ PF04290.12 gi|313126048|ref|YP_004036318.1| - 0.22 11.4 9.3 0.085 12.8 5.4 1.9 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component Sdh_cyt PF01127.22 gi|313126049|ref|YP_004036319.1| - 2e-25 89.1 5.8 2.3e-25 89.0 5.8 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AstE_AspA PF04952.14 gi|313126050|ref|YP_004036320.1| - 7e-66 222.3 0.0 8.5e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family RimK PF08443.11 gi|313126051|ref|YP_004036321.1| - 1.9e-22 79.8 0.0 3e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|313126051|ref|YP_004036321.1| - 3.9e-08 33.3 0.4 2.2e-06 27.6 0.1 2.3 1 1 1 2 2 2 1 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|313126051|ref|YP_004036321.1| - 1.1e-06 28.2 0.0 2.1e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|313126051|ref|YP_004036321.1| - 2.2e-05 24.6 0.0 9.7e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain R2K_3 PF14243.6 gi|313126051|ref|YP_004036321.1| - 0.00025 21.1 0.2 0.00048 20.2 0.2 1.6 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|313126051|ref|YP_004036321.1| - 0.00043 20.8 0.2 0.0012 19.4 0.2 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|313126051|ref|YP_004036321.1| - 0.0024 18.5 0.5 0.0077 16.9 0.5 1.9 1 0 0 1 1 1 1 Aspartyl protease R2K_2 PF18299.1 gi|313126051|ref|YP_004036321.1| - 0.014 15.3 0.1 0.027 14.3 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 ATPgrasp_YheCD PF14398.6 gi|313126051|ref|YP_004036321.1| - 0.017 14.4 0.0 0.052 12.8 0.0 1.7 1 1 0 1 1 1 0 YheC/D like ATP-grasp DUF5488 PF17590.2 gi|313126051|ref|YP_004036321.1| - 0.05 13.3 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5488) HhH-GPD PF00730.25 gi|313126052|ref|YP_004036322.1| - 5.9e-21 75.0 0.1 7.6e-21 74.6 0.1 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein 3HCDH_N PF02737.18 gi|313126053|ref|YP_004036323.1| - 1.8e-66 223.5 0.5 3.9e-66 222.4 0.5 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|313126053|ref|YP_004036323.1| - 2e-60 204.2 0.0 3.2e-60 203.5 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|313126053|ref|YP_004036323.1| - 1.7e-47 159.9 2.0 8.3e-33 112.9 0.0 3.4 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|313126053|ref|YP_004036323.1| - 4.4e-36 125.0 0.6 3e-34 119.0 0.1 2.7 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|313126053|ref|YP_004036323.1| - 6.7e-07 29.4 0.1 1.6e-06 28.2 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|313126053|ref|YP_004036323.1| - 7.5e-05 23.0 0.2 0.00021 21.5 0.2 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|313126053|ref|YP_004036323.1| - 0.0035 17.9 4.4 0.047 14.3 4.4 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|313126053|ref|YP_004036323.1| - 0.0037 16.9 0.1 0.0062 16.1 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|313126053|ref|YP_004036323.1| - 0.049 12.9 0.3 0.094 12.0 0.3 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DFP PF04127.15 gi|313126053|ref|YP_004036323.1| - 0.055 13.3 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein 2-Hacid_dh_C PF02826.19 gi|313126053|ref|YP_004036323.1| - 0.21 10.9 1.6 4.4 6.6 0.2 2.3 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PALP PF00291.25 gi|313126053|ref|YP_004036323.1| - 0.25 10.7 2.1 1.2 8.5 0.1 2.6 3 0 0 3 3 3 0 Pyridoxal-phosphate dependent enzyme Phage_integrase PF00589.22 gi|313126054|ref|YP_004036324.1| - 2.2e-14 53.6 0.1 5.6e-14 52.3 0.1 1.6 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|313126054|ref|YP_004036324.1| - 0.018 15.5 0.0 0.12 12.8 0.0 2.4 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|313126054|ref|YP_004036324.1| - 0.06 13.7 0.2 0.72 10.2 0.0 2.7 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Malate_DH PF12434.8 gi|313126054|ref|YP_004036324.1| - 0.063 13.3 0.1 0.21 11.6 0.1 1.9 1 0 0 1 1 1 0 Malate dehydrogenase enzyme Phage_integrase PF00589.22 gi|313126055|ref|YP_004036325.1| - 7.6e-13 48.6 0.1 1.2e-12 48.0 0.1 1.2 1 0 0 1 1 1 1 Phage integrase family AsiA PF09010.10 gi|313126055|ref|YP_004036325.1| - 0.012 15.7 0.0 0.05 13.7 0.0 1.9 2 0 0 2 2 2 0 Anti-Sigma Factor A DUF2816 PF10992.8 gi|313126056|ref|YP_004036326.1| - 0.033 14.1 0.8 0.1 12.5 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2816) N6_Mtase PF02384.16 gi|313126057|ref|YP_004036327.1| - 2.8e-10 40.0 0.0 4.4e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 gi|313126057|ref|YP_004036327.1| - 0.00043 20.7 0.0 0.00087 19.8 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.14 gi|313126057|ref|YP_004036327.1| - 0.0021 17.6 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|313126057|ref|YP_004036327.1| - 0.052 14.3 0.0 0.14 12.9 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain UvrD-helicase PF00580.21 gi|313126059|ref|YP_004036329.1| - 4.8e-55 187.3 0.0 3.5e-26 92.5 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|313126059|ref|YP_004036329.1| - 2.8e-31 108.8 0.0 6.5e-31 107.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|313126059|ref|YP_004036329.1| - 6.2e-31 108.0 0.0 1.2e-29 103.8 0.0 2.1 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|313126059|ref|YP_004036329.1| - 1.2e-21 77.8 2.3 3.8e-21 76.2 2.3 1.9 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|313126059|ref|YP_004036329.1| - 8.5e-08 31.9 0.9 0.0032 17.3 0.0 2.9 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|313126059|ref|YP_004036329.1| - 6.3e-06 26.0 0.1 0.0003 20.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain Gelsolin PF00626.22 gi|313126059|ref|YP_004036329.1| - 0.028 14.3 0.0 0.072 13.0 0.0 1.7 1 0 0 1 1 1 0 Gelsolin repeat DUF2800 PF10926.8 gi|313126059|ref|YP_004036329.1| - 0.04 13.2 0.0 0.071 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) PDDEXK_1 PF12705.7 gi|313126060|ref|YP_004036330.1| - 5.5e-23 82.2 0.1 7e-23 81.8 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2800 PF10926.8 gi|313126060|ref|YP_004036330.1| - 0.024 13.9 0.0 0.042 13.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2800) UvrD_C PF13361.6 gi|313126061|ref|YP_004036331.1| - 2.8e-05 23.7 0.0 7.6e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PLDc_2 PF13091.6 gi|313126062|ref|YP_004036332.1| - 1.5e-09 37.9 0.1 3e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 PLD-like domain Tyr-DNA_phospho PF06087.12 gi|313126062|ref|YP_004036332.1| - 0.0002 20.4 0.0 0.00031 19.8 0.0 1.3 1 0 0 1 1 1 1 Tyrosyl-DNA phosphodiesterase DAP_epimerase PF01678.19 gi|313126062|ref|YP_004036332.1| - 0.056 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Diaminopimelate epimerase RE_NgoFVII PF09565.10 gi|313126062|ref|YP_004036332.1| - 0.077 12.3 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Piwi PF02171.17 gi|313126063|ref|YP_004036333.1| - 1.9e-20 73.3 0.0 3.6e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Piwi domain DUF2121 PF09894.9 gi|313126063|ref|YP_004036333.1| - 0.032 13.8 0.0 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2121) MID_pPIWI_RE PF18157.1 gi|313126063|ref|YP_004036333.1| - 0.089 13.1 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 MID domain of pPIWI_RE pPIWI_RE_REase PF18154.1 gi|313126063|ref|YP_004036333.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 REase associating with pPIWI_RE AAA_14 PF13173.6 gi|313126064|ref|YP_004036334.1| - 2.6e-10 40.5 0.0 1.7e-09 37.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|313126064|ref|YP_004036334.1| - 8.7e-06 26.1 0.1 2.3e-05 24.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126064|ref|YP_004036334.1| - 4.7e-05 23.8 0.1 0.00014 22.3 0.1 1.8 1 0 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|313126064|ref|YP_004036334.1| - 0.0013 19.1 0.1 0.015 15.7 0.0 2.5 2 0 0 2 2 2 1 RNA helicase NACHT PF05729.12 gi|313126064|ref|YP_004036334.1| - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_23 PF13476.6 gi|313126064|ref|YP_004036334.1| - 0.0022 18.5 0.0 0.0047 17.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|313126064|ref|YP_004036334.1| - 0.003 17.2 0.1 0.012 15.2 0.0 2.1 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|313126064|ref|YP_004036334.1| - 0.0054 15.9 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|313126064|ref|YP_004036334.1| - 0.006 16.5 0.2 0.059 13.3 0.2 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|313126064|ref|YP_004036334.1| - 0.0098 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|313126064|ref|YP_004036334.1| - 0.012 16.0 0.0 0.04 14.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|313126064|ref|YP_004036334.1| - 0.013 14.8 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|313126064|ref|YP_004036334.1| - 0.043 14.3 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DUF2075 PF09848.9 gi|313126064|ref|YP_004036334.1| - 0.048 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RsgA_GTPase PF03193.16 gi|313126064|ref|YP_004036334.1| - 0.06 13.3 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase MobB PF03205.14 gi|313126064|ref|YP_004036334.1| - 0.16 11.8 0.1 0.35 10.8 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|313126064|ref|YP_004036334.1| - 0.23 11.8 1.6 2.2 8.6 1.6 2.4 1 1 0 1 1 1 0 AAA domain DUF3883 PF13020.6 gi|313126065|ref|YP_004036335.1| - 0.00031 20.7 0.0 0.0012 18.9 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) PUD PF03714.14 gi|313126065|ref|YP_004036335.1| - 0.088 13.7 0.2 0.25 12.2 0.2 1.7 1 0 0 1 1 1 0 Bacterial pullanase-associated domain HATPase_c PF02518.26 gi|313126065|ref|YP_004036335.1| - 0.11 13.0 0.0 0.69 10.4 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_pol3_chi PF04364.13 gi|313126065|ref|YP_004036335.1| - 0.16 12.1 0.8 0.39 10.9 0.8 1.6 1 0 0 1 1 1 0 DNA polymerase III chi subunit, HolC DUF1382 PF07131.11 gi|313126066|ref|YP_004036336.1| - 0.14 12.2 0.0 0.65 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1382) Mrr_cat PF04471.12 gi|313126067|ref|YP_004036337.1| - 5.4e-09 36.1 0.0 9.9e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease AAA_23 PF13476.6 gi|313126069|ref|YP_004036339.1| - 6.3e-08 33.4 4.4 6.3e-08 33.4 4.4 4.5 2 2 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|313126069|ref|YP_004036339.1| - 6.6e-08 32.3 0.0 0.0025 17.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|313126069|ref|YP_004036339.1| - 1.2e-07 31.9 0.1 0.00037 20.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|313126069|ref|YP_004036339.1| - 1.7e-05 24.8 0.0 0.099 12.3 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_27 PF13514.6 gi|313126069|ref|YP_004036339.1| - 0.0003 20.4 0.2 0.0022 17.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|313126069|ref|YP_004036339.1| - 0.013 14.2 0.0 0.013 14.2 0.0 4.4 4 1 0 5 5 5 0 AAA domain ABC_tran PF00005.27 gi|313126069|ref|YP_004036339.1| - 0.032 14.7 0.2 3 8.3 0.0 3.3 2 1 0 2 2 2 0 ABC transporter Terminase_4 PF05119.12 gi|313126069|ref|YP_004036339.1| - 0.045 14.2 3.8 0.12 12.8 0.7 3.2 2 1 0 2 2 2 0 Phage terminase, small subunit AAA_29 PF13555.6 gi|313126069|ref|YP_004036339.1| - 0.14 12.0 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain V_ATPase_I PF01496.19 gi|313126069|ref|YP_004036339.1| - 1.6 6.5 12.7 0.072 11.0 6.7 1.7 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Metallophos_2 PF12850.7 gi|313126070|ref|YP_004036340.1| - 1.7e-12 47.8 0.6 5.8e-12 46.1 0.2 2.1 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313126070|ref|YP_004036340.1| - 7.5e-09 36.4 0.3 1.5e-08 35.4 0.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Toprim_3 PF13362.6 gi|313126070|ref|YP_004036340.1| - 0.041 14.3 1.2 0.097 13.0 0.5 2.0 2 0 0 2 2 2 0 Toprim domain DUF1317 PF07026.11 gi|313126070|ref|YP_004036340.1| - 0.065 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1317) DUF604 PF04646.12 gi|313126070|ref|YP_004036340.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF604 HalX PF08663.10 gi|313126071|ref|YP_004036341.1| - 0.048 14.0 4.3 0.18 12.2 4.3 2.0 1 0 0 1 1 1 0 HalX domain DUF241 PF03087.14 gi|313126071|ref|YP_004036341.1| - 0.068 13.0 0.4 0.068 13.0 0.4 1.6 2 0 0 2 2 2 0 Arabidopsis protein of unknown function DUF2789 PF10982.8 gi|313126071|ref|YP_004036341.1| - 0.087 13.0 0.7 4.7 7.5 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2789) ALMT PF11744.8 gi|313126071|ref|YP_004036341.1| - 0.11 11.3 0.2 0.18 10.6 0.2 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter ZapB PF06005.12 gi|313126071|ref|YP_004036341.1| - 0.19 12.2 3.7 0.66 10.5 1.6 2.5 2 0 0 2 2 2 0 Cell division protein ZapB HNH_2 PF13391.6 gi|313126072|ref|YP_004036342.1| - 2.7e-08 33.8 0.0 8.8e-08 32.2 0.0 1.9 1 1 0 1 1 1 1 HNH endonuclease HTH_45 PF14947.6 gi|313126072|ref|YP_004036342.1| - 0.0007 19.5 0.0 0.0046 16.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DUF3363 PF11843.8 gi|313126072|ref|YP_004036342.1| - 0.0043 16.0 0.4 0.0062 15.5 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3363) AAA_assoc_C PF09821.9 gi|313126072|ref|YP_004036342.1| - 0.0098 16.4 0.0 1.1 9.8 0.0 2.4 2 0 0 2 2 2 1 C-terminal AAA-associated domain Ribosomal_L21e PF01157.18 gi|313126073|ref|YP_004036343.1| - 0.014 15.2 0.1 0.022 14.6 0.1 1.4 1 1 0 1 1 1 0 Ribosomal protein L21e TOBE_2 PF08402.10 gi|313126073|ref|YP_004036343.1| - 0.033 14.4 0.6 0.62 10.3 0.2 2.0 2 0 0 2 2 2 0 TOBE domain SH3_13 PF18335.1 gi|313126073|ref|YP_004036343.1| - 0.081 12.8 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 ATP-dependent RecD-like DNA helicase SH3 domain DUF4314 PF14192.6 gi|313126073|ref|YP_004036343.1| - 0.085 12.8 0.3 0.13 12.2 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4314) Metallophos PF00149.28 gi|313126074|ref|YP_004036344.1| - 9.3e-11 42.6 0.1 1.5e-10 41.9 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|313126074|ref|YP_004036344.1| - 7.1e-08 32.8 0.0 2.9e-07 30.8 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HATPase_c_3 PF13589.6 gi|313126075|ref|YP_004036345.1| - 0.002 18.0 0.0 0.0057 16.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Helicase_C PF00271.31 gi|313126077|ref|YP_004036347.1| - 7.5e-19 68.1 0.0 2.3e-18 66.5 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PLDc_2 PF13091.6 gi|313126077|ref|YP_004036347.1| - 2.3e-12 46.9 0.0 6.2e-12 45.6 0.0 1.7 1 0 0 1 1 1 1 PLD-like domain SNF2_N PF00176.23 gi|313126077|ref|YP_004036347.1| - 3.7e-11 42.3 0.2 1e-07 31.0 0.1 2.6 2 1 1 3 3 3 2 SNF2 family N-terminal domain ResIII PF04851.15 gi|313126077|ref|YP_004036347.1| - 7e-06 26.2 0.3 0.0042 17.1 0.3 2.6 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit RE_NgoFVII PF09565.10 gi|313126077|ref|YP_004036347.1| - 0.0069 15.7 0.0 0.058 12.7 0.0 2.4 2 0 0 2 2 2 1 NgoFVII restriction endonuclease DUF2075 PF09848.9 gi|313126077|ref|YP_004036347.1| - 0.016 14.4 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|313126077|ref|YP_004036347.1| - 0.02 14.7 1.4 15 5.3 0.0 3.8 3 1 1 4 4 4 0 DEAD/DEAH box helicase DUF5601 PF18151.1 gi|313126077|ref|YP_004036347.1| - 0.067 13.5 0.0 0.34 11.3 0.0 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5601) AAA_22 PF13401.6 gi|313126077|ref|YP_004036347.1| - 0.52 10.6 2.8 2.9 8.2 0.1 3.4 3 1 0 3 3 3 0 AAA domain TBP PF00352.21 gi|313126078|ref|YP_004036348.1| - 1e-28 99.1 0.0 5.6e-17 61.5 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|313126078|ref|YP_004036348.1| - 0.0031 17.6 0.0 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3378) NLE PF08154.12 gi|313126078|ref|YP_004036348.1| - 0.081 13.5 0.0 0.58 10.7 0.0 2.1 2 0 0 2 2 2 0 NLE (NUC135) domain N6_Mtase PF02384.16 gi|313126079|ref|YP_004036349.1| - 1.4e-11 44.2 0.0 0.0003 20.2 0.0 3.6 3 1 0 3 3 3 3 N-6 DNA Methylase Eco57I PF07669.11 gi|313126079|ref|YP_004036349.1| - 1.7e-11 44.5 0.5 2.7e-10 40.7 0.6 2.8 2 1 0 2 2 2 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|313126079|ref|YP_004036349.1| - 1.6e-05 24.7 0.0 0.017 14.8 0.0 3.4 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 TaqI_C PF12950.7 gi|313126079|ref|YP_004036349.1| - 0.00035 20.6 0.0 0.001 19.1 0.0 1.8 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain APG17 PF04108.12 gi|313126079|ref|YP_004036349.1| - 0.42 9.7 4.7 0.72 8.9 0.1 2.6 2 0 0 2 2 2 0 Autophagy protein Apg17 HTH_11 PF08279.12 gi|313126080|ref|YP_004036350.1| - 0.00013 21.9 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|313126080|ref|YP_004036350.1| - 0.00015 21.6 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.11 gi|313126080|ref|YP_004036350.1| - 0.00038 20.0 0.1 0.00055 19.4 0.1 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_IclR PF09339.10 gi|313126080|ref|YP_004036350.1| - 0.00043 20.0 0.0 0.00054 19.7 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313126080|ref|YP_004036350.1| - 0.00055 19.9 0.0 0.00062 19.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|313126080|ref|YP_004036350.1| - 0.0014 18.7 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313126080|ref|YP_004036350.1| - 0.0026 17.6 0.0 0.0039 17.0 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|313126080|ref|YP_004036350.1| - 0.0032 17.2 0.1 0.0041 16.9 0.1 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|313126080|ref|YP_004036350.1| - 0.0035 17.3 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix FaeA PF04703.12 gi|313126080|ref|YP_004036350.1| - 0.0045 17.3 0.0 0.0052 17.1 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.6 gi|313126080|ref|YP_004036350.1| - 0.0063 16.1 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|313126080|ref|YP_004036350.1| - 0.037 14.0 0.1 0.047 13.7 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SgrR_N PF12793.7 gi|313126080|ref|YP_004036350.1| - 0.083 13.1 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_36 PF13730.6 gi|313126080|ref|YP_004036350.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RMI1_C PF16099.5 gi|313126084|ref|YP_004036354.1| - 0.095 12.5 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold RNase_H_2 PF13482.6 gi|313126085|ref|YP_004036355.1| - 3.6e-06 27.1 0.0 0.00017 21.6 0.0 2.6 2 1 0 2 2 2 1 RNase_H superfamily HNH PF01844.23 gi|313126086|ref|YP_004036356.1| - 4.7e-11 42.7 2.3 4.7e-11 42.7 2.3 1.7 2 0 0 2 2 2 1 HNH endonuclease PHD PF00628.29 gi|313126086|ref|YP_004036356.1| - 0.013 15.4 2.4 0.032 14.1 0.1 2.2 2 0 0 2 2 2 0 PHD-finger HNH_2 PF13391.6 gi|313126086|ref|YP_004036356.1| - 0.17 12.1 1.5 0.52 10.5 1.5 1.9 1 1 0 1 1 1 0 HNH endonuclease PAF-AH_p_II PF03403.13 gi|313126087|ref|YP_004036357.1| - 0.2 10.2 0.0 0.2 10.1 0.0 1.0 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II Glycolipid_bind PF06475.11 gi|313126088|ref|YP_004036358.1| - 0.034 13.7 0.0 0.064 12.8 0.0 1.5 1 1 0 1 1 1 0 Putative glycolipid-binding GFRP PF06399.13 gi|313126088|ref|YP_004036358.1| - 0.07 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) UBA_4 PF14555.6 gi|313126088|ref|YP_004036358.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain HHH PF00633.23 gi|313126089|ref|YP_004036359.1| - 0.0049 16.7 0.0 0.0089 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Helicase_IV_N PF12462.8 gi|313126089|ref|YP_004036359.1| - 0.03 14.2 0.5 0.044 13.7 0.5 1.2 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal Transposase_20 PF02371.16 gi|313126089|ref|YP_004036359.1| - 0.091 13.1 0.0 0.25 11.7 0.0 1.7 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family HHH_2 PF12826.7 gi|313126089|ref|YP_004036359.1| - 0.17 12.0 0.0 0.42 10.7 0.0 1.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif CBS PF00571.28 gi|313126090|ref|YP_004036360.1| - 4.7e-05 23.7 0.0 0.017 15.5 0.0 2.7 2 0 0 2 2 2 2 CBS domain AdoMet_Synthase PF01941.19 gi|313126090|ref|YP_004036360.1| - 0.091 11.5 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) HEPN_RiboL-PSP PF18735.1 gi|313126090|ref|YP_004036360.1| - 0.11 12.5 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 RiboL-PSP-HEPN ADP_ribosyl_GH PF03747.14 gi|313126093|ref|YP_004036363.1| - 3.4e-71 240.3 3.1 4.1e-71 240.1 3.1 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_YMGG PF13441.6 gi|313126093|ref|YP_004036363.1| - 0.023 14.4 3.6 0.063 13.0 2.3 2.1 2 0 0 2 2 2 0 YMGG-like Gly-zipper SurE PF01975.17 gi|313126093|ref|YP_004036363.1| - 0.096 12.4 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Survival protein SurE Rick_17kDa_Anti PF05433.15 gi|313126093|ref|YP_004036363.1| - 0.36 10.7 7.6 0.052 13.4 3.2 2.0 2 0 0 2 2 2 0 Glycine zipper 2TM domain HEAT_2 PF13646.6 gi|313126094|ref|YP_004036364.1| - 8.9e-13 48.4 28.7 3.7e-06 27.2 2.5 4.3 2 1 2 4 4 4 3 HEAT repeats HEAT_EZ PF13513.6 gi|313126094|ref|YP_004036364.1| - 3.2e-11 43.5 11.3 6e-05 23.5 0.2 7.2 4 1 5 9 9 9 5 HEAT-like repeat Cnd1 PF12717.7 gi|313126094|ref|YP_004036364.1| - 1.3e-10 41.6 0.1 7.7e-06 26.0 0.0 3.4 1 1 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|313126094|ref|YP_004036364.1| - 3.2e-10 39.2 0.0 1.5e-09 37.0 0.0 1.9 1 1 1 2 2 2 2 Adaptin N terminal region HEAT PF02985.22 gi|313126094|ref|YP_004036364.1| - 3.8e-08 32.9 14.6 0.034 14.4 0.0 7.1 8 0 0 8 8 8 3 HEAT repeat Arm PF00514.23 gi|313126094|ref|YP_004036364.1| - 5.5e-07 29.4 9.3 0.0001 22.2 0.0 5.8 6 0 0 6 6 6 1 Armadillo/beta-catenin-like repeat DUF5578 PF17741.1 gi|313126094|ref|YP_004036364.1| - 0.00048 19.6 1.7 0.0032 16.9 0.8 2.1 1 1 1 2 2 2 1 Family of unknown function (DUF5578) Cnd3 PF12719.7 gi|313126094|ref|YP_004036364.1| - 0.0045 16.2 0.0 0.011 15.0 0.0 1.6 1 1 0 1 1 1 1 Nuclear condensing complex subunits, C-term domain API5 PF05918.11 gi|313126094|ref|YP_004036364.1| - 0.0052 15.7 1.2 1.5 7.6 0.1 2.3 2 0 0 2 2 2 2 Apoptosis inhibitory protein 5 (API5) CLASP_N PF12348.8 gi|313126094|ref|YP_004036364.1| - 0.027 14.1 0.0 0.074 12.6 0.0 1.7 1 1 0 1 1 1 0 CLASP N terminal Cohesin_HEAT PF12765.7 gi|313126094|ref|YP_004036364.1| - 0.049 13.9 0.3 6.9 7.1 0.1 3.1 3 0 0 3 3 3 0 HEAT repeat associated with sister chromatid cohesion DUF3088 PF11287.8 gi|313126094|ref|YP_004036364.1| - 0.051 13.4 0.2 0.85 9.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3088) MMS19_C PF12460.8 gi|313126094|ref|YP_004036364.1| - 0.052 12.7 0.0 1.7 7.7 0.0 2.6 2 1 1 3 3 3 0 RNAPII transcription regulator C-terminal RE_AspBHI_N PF18062.1 gi|313126095|ref|YP_004036365.1| - 3e-50 170.3 0.0 3.9e-50 170.0 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease AspBHI N-terminal HNH_2 PF13391.6 gi|313126095|ref|YP_004036365.1| - 1.3e-08 34.9 0.1 3.3e-08 33.6 0.1 1.7 1 0 0 1 1 1 1 HNH endonuclease HEPN PF05168.14 gi|313126096|ref|YP_004036366.1| - 0.00024 21.2 0.0 0.00032 20.8 0.0 1.2 1 0 0 1 1 1 1 HEPN domain Polbeta PF18765.1 gi|313126097|ref|YP_004036367.1| - 7.4e-10 38.8 0.1 1.4e-09 37.9 0.1 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|313126097|ref|YP_004036367.1| - 3.7e-09 36.7 0.3 6.3e-09 36.0 0.3 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.7 gi|313126097|ref|YP_004036367.1| - 8.9e-05 22.3 0.0 0.00037 20.3 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|313126097|ref|YP_004036367.1| - 0.0016 18.3 0.0 0.004 17.0 0.0 1.7 1 0 0 1 1 1 1 MarR family DNA_pol_B_palm PF14792.6 gi|313126097|ref|YP_004036367.1| - 0.0018 18.5 0.3 0.0039 17.4 0.1 1.6 2 0 0 2 2 2 1 DNA polymerase beta palm HTH_27 PF13463.6 gi|313126097|ref|YP_004036367.1| - 0.01 16.3 0.1 0.036 14.5 0.0 2.0 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|313126097|ref|YP_004036367.1| - 0.016 15.3 0.0 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 gi|313126097|ref|YP_004036367.1| - 0.017 14.8 0.1 0.85 9.3 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Adenyl_cycl_N PF12633.7 gi|313126097|ref|YP_004036367.1| - 0.026 14.4 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain Rrf2 PF02082.20 gi|313126097|ref|YP_004036367.1| - 0.099 13.0 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF1495 PF07381.11 gi|313126097|ref|YP_004036367.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DNA_ligase_ZBD PF03119.16 gi|313126098|ref|YP_004036368.1| - 0.00081 19.4 13.4 0.18 11.9 0.2 3.8 4 0 0 4 4 4 3 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|313126098|ref|YP_004036368.1| - 0.002 18.2 16.0 0.089 12.9 3.2 3.3 2 1 1 3 3 3 2 Zinc ribbon domain Spt4 PF06093.13 gi|313126098|ref|YP_004036368.1| - 0.028 14.5 0.5 0.028 14.5 0.5 1.7 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger Auto_anti-p27 PF06677.12 gi|313126098|ref|YP_004036368.1| - 0.092 12.9 6.1 0.85 9.8 0.0 3.6 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|313126098|ref|YP_004036368.1| - 0.26 11.4 11.3 0.057 13.5 5.5 2.5 2 1 1 3 3 3 0 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|313126098|ref|YP_004036368.1| - 0.32 11.3 12.2 0.13 12.5 3.9 3.1 2 1 1 3 3 3 0 zinc-ribbon Zn_Tnp_IS91 PF14319.6 gi|313126098|ref|YP_004036368.1| - 0.61 10.2 6.6 2.7 8.1 6.6 2.0 1 1 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|313126098|ref|YP_004036368.1| - 1.2 9.2 9.0 2.5 8.1 7.5 2.1 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DDE_Tnp_1 PF01609.21 gi|313126100|ref|YP_004036370.1| - 0.016 14.8 0.0 0.035 13.8 0.0 1.5 1 1 0 1 1 1 0 Transposase DDE domain SbcCD_C PF13558.6 gi|313126100|ref|YP_004036370.1| - 0.12 12.6 0.1 1.2 9.4 0.0 2.4 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit HUN PF08729.10 gi|313126102|ref|YP_004036372.1| - 0.024 14.6 0.4 0.042 13.8 0.1 1.5 2 0 0 2 2 2 0 HPC2 and ubinuclein domain COG4 PF08318.12 gi|313126102|ref|YP_004036372.1| - 0.13 11.3 0.0 0.15 11.1 0.0 1.0 1 0 0 1 1 1 0 COG4 transport protein HEM4 PF02602.15 gi|313126103|ref|YP_004036373.1| - 0.12 11.7 0.0 0.64 9.3 0.0 1.9 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD PIN_4 PF13638.6 gi|313126104|ref|YP_004036374.1| - 0.037 14.3 0.0 0.072 13.4 0.0 1.4 1 0 0 1 1 1 0 PIN domain Cas_Cas02710 PF09670.10 gi|313126105|ref|YP_004036375.1| - 0.00057 18.8 0.0 0.0013 17.6 0.0 1.5 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.10 gi|313126105|ref|YP_004036375.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_NE0113 PF09623.10 gi|313126105|ref|YP_004036375.1| - 0.0014 18.4 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_DxTHG PF09455.10 gi|313126105|ref|YP_004036375.1| - 0.0039 16.8 0.1 0.0039 16.8 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Phage_integrase PF00589.22 gi|313126106|ref|YP_004036376.1| - 4.7e-17 62.3 0.0 1.5e-16 60.6 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family DZR PF12773.7 gi|313126106|ref|YP_004036376.1| - 0.00047 20.1 9.3 0.00074 19.5 9.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-FCS PF06467.14 gi|313126106|ref|YP_004036376.1| - 0.82 9.7 4.2 16 5.5 0.2 2.6 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-TAZ PF02135.16 gi|313126106|ref|YP_004036376.1| - 0.96 10.0 7.4 2 8.9 7.4 1.4 1 0 0 1 1 1 0 TAZ zinc finger Zn-ribbon_8 PF09723.10 gi|313126106|ref|YP_004036376.1| - 1.4 9.1 7.0 3.5 7.8 0.3 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|313126106|ref|YP_004036376.1| - 2.2 9.1 8.7 5.2 7.9 2.5 2.3 1 1 1 2 2 2 0 zinc-ribbon family DUF4238 PF14022.6 gi|313126107|ref|YP_004036377.1| - 1.6e-42 145.9 0.0 1.9e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4238) ATPase_2 PF01637.18 gi|313126109|ref|YP_004036379.1| - 4.5e-25 88.9 0.0 1.4e-23 84.0 0.0 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|313126109|ref|YP_004036379.1| - 1.5e-16 60.7 0.0 3.3e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|313126109|ref|YP_004036379.1| - 2.9e-07 30.6 0.0 5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126109|ref|YP_004036379.1| - 2.9e-06 27.8 0.5 3.3e-05 24.3 0.5 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313126109|ref|YP_004036379.1| - 8.8e-06 26.0 0.0 0.00027 21.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain HTH_45 PF14947.6 gi|313126109|ref|YP_004036379.1| - 0.0017 18.3 0.0 0.0044 17.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|313126109|ref|YP_004036379.1| - 0.0041 17.0 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|313126109|ref|YP_004036379.1| - 0.09 12.6 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Beta-lactamase PF00144.24 gi|313126110|ref|YP_004036380.1| - 3.4e-54 184.3 4.5 4.8e-54 183.8 4.5 1.2 1 0 0 1 1 1 1 Beta-lactamase DUF3334 PF11813.8 gi|313126111|ref|YP_004036381.1| - 0.026 14.2 0.1 0.048 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3334) DsbB PF02600.16 gi|313126112|ref|YP_004036382.1| - 1.3e-15 58.1 10.9 4.2e-15 56.5 10.9 1.7 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB BRI3BP PF14965.6 gi|313126112|ref|YP_004036382.1| - 3.1 7.3 11.6 0.16 11.5 4.3 2.0 1 1 0 2 2 2 0 Negative regulator of p53/TP53 TauE PF01925.19 gi|313126113|ref|YP_004036383.1| - 0.0014 18.3 1.3 0.0017 18.0 1.3 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SpoVR PF04293.13 gi|313126114|ref|YP_004036384.1| - 1.4e-90 304.0 7.2 9e-76 255.2 1.1 2.1 2 0 0 2 2 2 2 SpoVR like protein YdaS_antitoxin PF15943.5 gi|313126114|ref|YP_004036384.1| - 0.044 13.7 0.0 0.51 10.2 0.0 2.3 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF444 PF04285.12 gi|313126115|ref|YP_004036385.1| - 1e-130 436.6 0.3 1.2e-130 436.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) PrkA PF06798.12 gi|313126116|ref|YP_004036386.1| - 4.3e-41 141.2 1.0 1e-39 136.7 0.1 2.3 2 0 0 2 2 2 2 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|313126116|ref|YP_004036386.1| - 5.4e-15 55.2 0.0 1.8e-11 43.6 0.0 3.2 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.12 gi|313126117|ref|YP_004036387.1| - 1.5e-71 241.1 10.4 1.5e-71 241.1 10.4 2.3 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|313126117|ref|YP_004036387.1| - 1.6e-65 221.4 0.0 2.6e-65 220.7 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|313126117|ref|YP_004036387.1| - 0.0035 17.5 0.8 0.18 12.0 0.1 2.6 2 1 0 2 2 2 1 RasGAP C-terminus Mad3_BUB1_I PF08311.12 gi|313126117|ref|YP_004036387.1| - 0.07 13.1 0.2 0.26 11.3 0.2 2.0 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 LysM PF01476.20 gi|313126117|ref|YP_004036387.1| - 0.21 11.7 0.1 8.2 6.6 0.1 2.7 2 0 0 2 2 2 0 LysM domain AAA_5 PF07728.14 gi|313126117|ref|YP_004036387.1| - 0.33 10.9 2.2 23 5.0 1.0 3.3 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF2188 PF09954.9 gi|313126118|ref|YP_004036388.1| - 0.037 14.2 0.0 0.077 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) UPF0179 PF03684.13 gi|313126119|ref|YP_004036389.1| - 2.5e-47 160.3 0.0 2.8e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) MelC1 PF06236.11 gi|313126119|ref|YP_004036389.1| - 0.022 14.9 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 DDE_Tnp_1_6 PF13751.6 gi|313126119|ref|YP_004036389.1| - 0.027 14.7 0.5 0.053 13.7 0.1 1.7 2 0 0 2 2 2 0 Transposase DDE domain Whib PF02467.16 gi|313126119|ref|YP_004036389.1| - 0.1 13.2 0.9 0.49 11.0 0.1 2.1 2 0 0 2 2 2 0 Transcription factor WhiB AstE_AspA PF04952.14 gi|313126120|ref|YP_004036390.1| - 3.3e-11 42.8 0.0 1e-10 41.2 0.0 1.8 2 1 0 2 2 2 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF4166 PF13761.6 gi|313126120|ref|YP_004036390.1| - 0.09 12.5 0.0 5.2 6.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4166) Peptidase_M99 PF17033.5 gi|313126120|ref|YP_004036390.1| - 0.18 11.2 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic DUF309 PF03745.14 gi|313126121|ref|YP_004036391.1| - 6.4e-15 54.6 0.3 9.7e-15 54.0 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) COPI_assoc PF08507.10 gi|313126122|ref|YP_004036392.1| - 0.0011 19.0 0.8 0.0012 18.9 0.8 1.0 1 0 0 1 1 1 1 COPI associated protein DUF3099 PF11298.8 gi|313126122|ref|YP_004036392.1| - 1 9.5 5.3 1.3 9.2 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) Inositol_P PF00459.25 gi|313126125|ref|YP_004036395.1| - 9.9e-47 159.7 3.1 1.3e-46 159.3 3.1 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|313126125|ref|YP_004036395.1| - 0.0021 17.6 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain HTH_AsnC-type PF13404.6 gi|313126126|ref|YP_004036396.1| - 1e-17 63.7 0.6 2.7e-17 62.3 0.8 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|313126126|ref|YP_004036396.1| - 1.8e-17 63.1 0.1 2.6e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|313126126|ref|YP_004036396.1| - 4.2e-17 61.4 0.0 8.7e-17 60.4 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313126126|ref|YP_004036396.1| - 5.1e-08 32.9 0.0 1e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313126126|ref|YP_004036396.1| - 1e-06 28.5 0.2 4.3e-05 23.3 0.1 2.3 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|313126126|ref|YP_004036396.1| - 7.3e-06 25.8 0.0 1.9e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|313126126|ref|YP_004036396.1| - 3.3e-05 23.6 0.0 0.00014 21.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313126126|ref|YP_004036396.1| - 0.00015 21.2 0.6 0.41 10.2 0.1 3.0 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_27 PF13463.6 gi|313126126|ref|YP_004036396.1| - 0.00065 20.2 0.3 0.0059 17.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|313126126|ref|YP_004036396.1| - 0.00086 19.2 0.0 0.0019 18.1 0.0 1.6 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|313126126|ref|YP_004036396.1| - 0.0084 16.3 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|313126126|ref|YP_004036396.1| - 0.031 13.9 0.7 0.13 11.9 0.1 2.4 3 1 0 3 3 3 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|313126126|ref|YP_004036396.1| - 0.041 13.9 0.1 0.38 10.7 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|313126126|ref|YP_004036396.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.6 gi|313126126|ref|YP_004036396.1| - 0.058 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|313126126|ref|YP_004036396.1| - 0.062 13.2 0.0 0.15 11.9 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GYD PF08734.11 gi|313126126|ref|YP_004036396.1| - 0.075 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 GYD domain DUF63 PF01889.17 gi|313126127|ref|YP_004036397.1| - 1e-40 140.7 11.4 7e-40 137.9 10.6 2.3 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 SID-1_RNA_chan PF13965.6 gi|313126127|ref|YP_004036397.1| - 0.025 13.0 0.7 0.035 12.5 0.7 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 YcaO PF02624.16 gi|313126128|ref|YP_004036398.1| - 2.3e-57 194.7 4.3 4e-57 193.9 4.3 1.4 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding SHMT PF00464.19 gi|313126131|ref|YP_004036401.1| - 5.3e-153 509.4 0.1 6.3e-153 509.1 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|313126131|ref|YP_004036401.1| - 2.2e-12 46.8 0.0 4.1e-12 46.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|313126131|ref|YP_004036401.1| - 1.4e-07 31.2 0.0 7.2e-07 28.8 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|313126131|ref|YP_004036401.1| - 0.003 16.9 0.6 0.0047 16.3 0.6 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF348 PF03990.14 gi|313126131|ref|YP_004036401.1| - 0.062 13.1 0.6 0.35 10.6 0.1 2.5 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain DUF5403 PF17395.2 gi|313126131|ref|YP_004036401.1| - 0.076 13.3 0.2 7.3 7.0 0.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5403) THF_DHG_CYH_C PF02882.19 gi|313126132|ref|YP_004036402.1| - 7.4e-67 223.6 1.5 1.2e-66 223.0 1.5 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|313126132|ref|YP_004036402.1| - 6.6e-38 129.5 0.0 1e-37 128.9 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ISN1 PF06437.11 gi|313126133|ref|YP_004036403.1| - 0.059 12.3 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 IMP-specific 5'-nucleotidase Prok-RING_1 PF14446.6 gi|313126133|ref|YP_004036403.1| - 0.12 12.3 2.1 0.44 10.5 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|313126134|ref|YP_004036404.1| - 0.00069 19.6 0.5 0.0013 18.7 0.5 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|313126134|ref|YP_004036404.1| - 0.0039 17.3 0.8 0.0092 16.1 0.8 1.6 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|313126134|ref|YP_004036404.1| - 0.0056 16.2 1.8 0.02 14.4 1.7 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|313126134|ref|YP_004036404.1| - 0.0063 16.5 2.1 1.7 8.7 0.0 2.5 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF1451 PF07295.11 gi|313126134|ref|YP_004036404.1| - 0.016 15.3 1.7 0.045 13.8 0.5 2.2 2 0 0 2 2 2 0 Zinc-ribbon containing domain zf-ribbon_3 PF13248.6 gi|313126134|ref|YP_004036404.1| - 0.02 14.3 1.4 0.35 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|313126134|ref|YP_004036404.1| - 0.039 14.0 0.6 0.067 13.2 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYDLN_acid PF09538.10 gi|313126134|ref|YP_004036404.1| - 0.13 12.9 0.0 0.27 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS91 PF14319.6 gi|313126134|ref|YP_004036404.1| - 0.14 12.2 0.9 0.24 11.5 0.9 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain A2L_zn_ribbon PF08792.10 gi|313126134|ref|YP_004036404.1| - 0.21 11.3 0.3 0.32 10.8 0.3 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-IS66 PF13005.7 gi|313126134|ref|YP_004036404.1| - 0.5 10.8 3.5 3 8.3 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|313126134|ref|YP_004036404.1| - 0.67 9.9 3.2 13 5.8 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|313126134|ref|YP_004036404.1| - 2.7 7.9 6.1 8.4 6.3 1.3 2.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|313126134|ref|YP_004036404.1| - 6.6 6.6 6.8 97 2.9 6.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.9 gi|313126134|ref|YP_004036404.1| - 7.5 6.7 6.2 2.9 8.0 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MutS_IV PF05190.18 gi|313126135|ref|YP_004036405.1| - 0.011 16.1 0.2 0.013 15.9 0.2 1.1 1 0 0 1 1 1 0 MutS family domain IV PadR PF03551.14 gi|313126136|ref|YP_004036406.1| - 1.5e-17 63.3 2.3 1.9e-17 63.0 2.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|313126136|ref|YP_004036406.1| - 0.0018 18.0 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|313126136|ref|YP_004036406.1| - 0.009 16.0 0.1 0.012 15.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|313126136|ref|YP_004036406.1| - 0.01 16.3 0.2 0.015 15.8 0.2 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|313126136|ref|YP_004036406.1| - 0.03 14.5 0.1 0.037 14.2 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|313126136|ref|YP_004036406.1| - 0.048 13.4 0.1 0.06 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) MarR_2 PF12802.7 gi|313126136|ref|YP_004036406.1| - 0.066 13.1 0.1 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 MarR family AI-2E_transport PF01594.16 gi|313126137|ref|YP_004036407.1| - 1.1e-33 116.9 27.2 1.3e-33 116.5 27.2 1.1 1 0 0 1 1 1 1 AI-2E family transporter DUF4010 PF13194.6 gi|313126138|ref|YP_004036408.1| - 8.1e-49 166.1 26.4 8.1e-49 166.1 26.4 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|313126138|ref|YP_004036408.1| - 7.1e-23 81.3 15.4 7.1e-23 81.3 15.4 3.6 3 1 0 3 3 3 1 MgtC family Aminotran_3 PF00202.21 gi|313126139|ref|YP_004036409.1| - 4.3e-76 256.2 0.0 2.2e-75 253.9 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-III XPG_I PF00867.18 gi|313126141|ref|YP_004036411.1| - 1.1e-23 83.3 0.1 2.1e-23 82.5 0.1 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|313126141|ref|YP_004036411.1| - 1.2e-11 44.9 0.0 2.1e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|313126141|ref|YP_004036411.1| - 3.9e-05 24.2 0.1 9.1e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|313126141|ref|YP_004036411.1| - 0.071 13.0 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain OrfB_IS605 PF01385.19 gi|313126141|ref|YP_004036411.1| - 0.079 13.2 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Probable transposase Serglycin PF04360.12 gi|313126142|ref|YP_004036412.1| - 0.00044 20.2 3.0 0.00073 19.5 3.0 1.3 1 0 0 1 1 1 1 Serglycin Acetyltransf_1 PF00583.25 gi|313126142|ref|YP_004036412.1| - 0.063 13.5 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family Methyltransf_11 PF08241.12 gi|313126143|ref|YP_004036413.1| - 2.4e-21 76.2 0.1 3.6e-21 75.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313126143|ref|YP_004036413.1| - 2.3e-18 66.6 0.0 3.1e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313126143|ref|YP_004036413.1| - 4.2e-18 65.8 0.1 7.5e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313126143|ref|YP_004036413.1| - 3.2e-13 49.6 0.0 5.2e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|313126143|ref|YP_004036413.1| - 3.5e-13 49.6 0.0 5e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313126143|ref|YP_004036413.1| - 2.6e-12 47.3 0.0 4.7e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|313126143|ref|YP_004036413.1| - 0.0039 16.8 0.0 0.0054 16.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|313126143|ref|YP_004036413.1| - 0.0071 16.2 0.0 0.0083 16.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase DUF3054 PF11255.8 gi|313126144|ref|YP_004036414.1| - 3.8e-19 69.2 8.8 4.4e-19 69.0 8.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) MFS_1 PF07690.16 gi|313126145|ref|YP_004036415.1| - 7.4e-26 90.9 60.4 5.6e-19 68.3 28.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|313126145|ref|YP_004036415.1| - 0.015 14.2 20.6 0.033 13.1 1.5 2.3 2 0 0 2 2 2 0 Sugar (and other) transporter MFS_3 PF05977.13 gi|313126145|ref|YP_004036415.1| - 1.1 7.5 20.6 0.11 10.9 5.6 2.9 2 1 0 2 2 2 0 Transmembrane secretion effector OCD_Mu_crystall PF02423.15 gi|313126147|ref|YP_004036417.1| - 3.6e-68 229.9 0.3 4.2e-68 229.6 0.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|313126147|ref|YP_004036417.1| - 9e-05 22.6 0.0 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|313126147|ref|YP_004036417.1| - 0.0011 19.5 0.7 0.003 18.1 0.4 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|313126147|ref|YP_004036417.1| - 0.075 13.5 0.1 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding eRF1_1 PF03463.15 gi|313126148|ref|YP_004036418.1| - 2.4e-28 98.7 0.2 3.7e-28 98.1 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|313126148|ref|YP_004036418.1| - 2.2e-24 86.1 0.8 6.2e-24 84.7 0.2 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|313126148|ref|YP_004036418.1| - 3.5e-09 37.1 0.1 6.7e-08 32.9 0.1 2.4 1 1 0 1 1 1 1 eRF1 domain 2 DUF4013 PF13197.6 gi|313126149|ref|YP_004036419.1| - 3.2e-34 118.2 27.2 3.2e-34 118.2 27.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Man-6-P_recep PF02157.15 gi|313126149|ref|YP_004036419.1| - 0.013 14.6 0.4 0.013 14.6 0.4 2.3 3 0 0 3 3 3 0 Mannose-6-phosphate receptor Trp_oprn_chp PF09534.10 gi|313126149|ref|YP_004036419.1| - 3.9 7.2 5.5 9.6 6.0 5.6 1.6 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4013 PF13197.6 gi|313126150|ref|YP_004036420.1| - 3.3e-39 134.4 18.4 3.3e-39 134.4 18.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) SHP PF03579.13 gi|313126150|ref|YP_004036420.1| - 0.18 11.8 0.2 0.51 10.4 0.2 1.8 1 0 0 1 1 1 0 Small hydrophobic protein Man-6-P_recep PF02157.15 gi|313126150|ref|YP_004036420.1| - 0.22 10.6 0.0 0.47 9.5 0.0 1.5 1 0 0 1 1 1 0 Mannose-6-phosphate receptor PMT_4TMC PF16192.5 gi|313126150|ref|YP_004036420.1| - 0.48 10.0 3.8 1.1 8.8 0.2 2.7 1 1 1 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase FbpA PF05833.11 gi|313126151|ref|YP_004036421.1| - 7.4e-88 295.3 0.0 9.8e-88 294.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|313126151|ref|YP_004036421.1| - 2.7e-24 85.9 0.0 4.9e-24 85.1 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|313126151|ref|YP_004036421.1| - 4.7e-05 23.5 0.0 0.0006 20.0 0.0 2.4 2 0 0 2 2 2 1 NFACT protein RNA binding domain Acetyltransf_10 PF13673.7 gi|313126152|ref|YP_004036422.1| - 1.1e-21 77.0 0.1 1.3e-21 76.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313126152|ref|YP_004036422.1| - 1.1e-14 54.7 0.1 1.4e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313126152|ref|YP_004036422.1| - 8.6e-11 42.1 0.0 1.5e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|313126152|ref|YP_004036422.1| - 3.5e-08 33.6 1.1 2.6e-07 30.8 1.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313126152|ref|YP_004036422.1| - 0.00016 21.9 0.3 0.0012 19.0 0.3 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 gi|313126152|ref|YP_004036422.1| - 0.00027 21.6 2.2 0.00051 20.7 1.8 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain EutN_CcmL PF03319.13 gi|313126152|ref|YP_004036422.1| - 0.12 12.9 0.5 0.45 11.1 0.5 1.9 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutN/carboxysome Acetyltransf_CG PF14542.6 gi|313126152|ref|YP_004036422.1| - 0.13 12.4 0.3 0.25 11.5 0.3 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase MCPsignal PF00015.21 gi|313126153|ref|YP_004036423.1| - 1.4e-40 138.9 39.7 2.3e-40 138.2 16.0 3.5 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|313126153|ref|YP_004036423.1| - 2.1e-07 31.2 2.6 6.6e-06 26.3 0.1 3.8 3 1 0 3 3 3 1 PAS fold PAS PF00989.25 gi|313126153|ref|YP_004036423.1| - 2.1e-07 30.9 0.1 2e-06 27.8 0.0 2.8 2 2 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|313126153|ref|YP_004036423.1| - 7.1e-07 29.4 0.0 1.1e-05 25.6 0.0 2.8 2 1 0 2 2 2 1 PAS domain DUF1664 PF07889.12 gi|313126153|ref|YP_004036423.1| - 1.3e-05 25.3 28.4 0.0065 16.5 3.5 5.0 2 2 4 6 6 6 4 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|313126153|ref|YP_004036423.1| - 3.3e-05 24.1 31.1 0.00038 20.6 3.8 5.4 2 2 3 5 5 5 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|313126153|ref|YP_004036423.1| - 0.00033 19.7 20.3 0.0017 17.3 4.9 2.6 1 1 0 2 2 2 2 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|313126153|ref|YP_004036423.1| - 0.00051 20.5 25.7 0.017 15.6 0.7 4.5 2 2 1 3 3 3 2 Syntaxin 6, N-terminal Atg14 PF10186.9 gi|313126153|ref|YP_004036423.1| - 0.0016 17.6 5.8 0.16 11.0 0.2 2.3 2 0 0 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 RmuC PF02646.16 gi|313126153|ref|YP_004036423.1| - 0.0023 17.1 12.7 0.097 11.8 0.6 4.6 2 2 2 5 5 5 2 RmuC family Laminin_II PF06009.12 gi|313126153|ref|YP_004036423.1| - 0.0046 17.0 29.5 0.092 12.8 1.5 4.7 2 2 2 4 4 4 2 Laminin Domain II YkyA PF10368.9 gi|313126153|ref|YP_004036423.1| - 0.0072 16.0 3.0 0.0072 16.0 3.0 3.4 1 1 1 3 3 3 2 Putative cell-wall binding lipoprotein MLTR_LBD PF17765.1 gi|313126153|ref|YP_004036423.1| - 0.019 15.1 4.9 0.061 13.5 0.0 3.4 3 1 0 3 3 3 0 MmyB-like transcription regulator ligand binding domain ApoLp-III PF07464.11 gi|313126153|ref|YP_004036423.1| - 0.026 14.6 26.6 1.1 9.4 1.6 4.5 2 2 2 4 4 4 0 Apolipophorin-III precursor (apoLp-III) DUF3450 PF11932.8 gi|313126153|ref|YP_004036423.1| - 0.028 13.7 19.4 0.14 11.4 2.9 4.0 2 2 1 4 4 4 0 Protein of unknown function (DUF3450) TMPIT PF07851.13 gi|313126153|ref|YP_004036423.1| - 0.048 12.9 5.6 2.3 7.4 0.5 2.8 2 1 0 2 2 2 0 TMPIT-like protein ATG16 PF08614.11 gi|313126153|ref|YP_004036423.1| - 0.054 13.7 25.8 0.24 11.6 5.1 3.7 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DUF4795 PF16043.5 gi|313126153|ref|YP_004036423.1| - 0.077 12.6 12.1 0.28 10.8 4.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) ISG65-75 PF11727.8 gi|313126153|ref|YP_004036423.1| - 0.11 11.7 20.6 0.16 11.1 5.6 3.1 2 1 1 3 3 3 0 Invariant surface glycoprotein Mod_r PF07200.13 gi|313126153|ref|YP_004036423.1| - 0.11 12.6 11.4 3.1 7.9 0.1 3.5 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF725 PF05267.12 gi|313126153|ref|YP_004036423.1| - 0.12 12.4 4.1 6.3 6.8 0.1 3.4 2 2 0 2 2 2 0 Protein of unknown function (DUF725) Mce4_CUP1 PF11887.8 gi|313126153|ref|YP_004036423.1| - 0.12 11.8 9.0 0.094 12.2 0.9 2.8 2 1 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Nup54 PF13874.6 gi|313126153|ref|YP_004036423.1| - 0.12 12.4 14.2 0.69 10.0 0.3 4.5 3 2 1 4 4 4 0 Nucleoporin complex subunit 54 Ferritin PF00210.24 gi|313126153|ref|YP_004036423.1| - 0.37 10.7 12.3 0.045 13.7 1.2 3.4 2 2 1 3 3 3 0 Ferritin-like domain Baculo_PEP_C PF04513.12 gi|313126153|ref|YP_004036423.1| - 0.38 10.8 14.9 0.74 9.8 3.4 3.7 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|313126153|ref|YP_004036423.1| - 0.4 8.6 9.5 1.1 7.1 7.5 2.1 1 1 0 1 1 1 0 Prominin IFT57 PF10498.9 gi|313126153|ref|YP_004036423.1| - 0.5 9.3 18.0 0.36 9.8 3.0 2.7 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 LXG PF04740.12 gi|313126153|ref|YP_004036423.1| - 0.52 10.0 21.2 0.27 10.9 2.4 4.0 2 2 2 4 4 4 0 LXG domain of WXG superfamily Serine_rich PF08824.10 gi|313126153|ref|YP_004036423.1| - 0.58 10.2 13.4 0.25 11.4 2.4 2.8 2 1 0 2 2 2 0 Serine rich protein interaction domain NPV_P10 PF05531.12 gi|313126153|ref|YP_004036423.1| - 0.58 10.7 26.2 0.097 13.1 2.7 6.0 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Nup88 PF10168.9 gi|313126153|ref|YP_004036423.1| - 0.59 7.9 11.5 0.087 10.6 3.8 2.1 2 0 0 2 2 2 0 Nuclear pore component DUF745 PF05335.13 gi|313126153|ref|YP_004036423.1| - 0.66 9.7 26.4 1.6 8.4 5.0 3.8 1 1 0 3 3 3 0 Protein of unknown function (DUF745) DUF1351 PF07083.11 gi|313126153|ref|YP_004036423.1| - 1.1 9.0 8.1 0.21 11.4 0.5 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1351) LOH1CR12 PF10158.9 gi|313126153|ref|YP_004036423.1| - 1.3 9.0 3.6 9.2 6.3 0.3 3.3 1 1 3 4 4 4 0 Tumour suppressor protein Fib_alpha PF08702.10 gi|313126153|ref|YP_004036423.1| - 1.5 9.0 16.4 3.2 7.9 0.2 4.5 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family WXG100 PF06013.12 gi|313126153|ref|YP_004036423.1| - 1.7 8.9 18.7 10 6.4 2.9 6.2 3 2 2 6 6 6 0 Proteins of 100 residues with WXG TPR_MLP1_2 PF07926.12 gi|313126153|ref|YP_004036423.1| - 1.9 8.6 27.2 0.48 10.5 4.8 3.5 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein T3SSipB PF16535.5 gi|313126153|ref|YP_004036423.1| - 2.7 8.5 25.4 3.9 7.9 10.2 3.7 1 1 1 3 3 3 0 Type III cell invasion protein SipB V-SNARE PF05008.15 gi|313126153|ref|YP_004036423.1| - 2.8 8.4 6.8 5.1 7.5 0.5 3.7 2 2 2 4 4 4 0 Vesicle transport v-SNARE protein N-terminus PMEI PF04043.15 gi|313126153|ref|YP_004036423.1| - 3.1 8.1 9.4 8.8 6.7 2.1 2.5 2 0 0 2 2 2 0 Plant invertase/pectin methylesterase inhibitor SlyX PF04102.12 gi|313126153|ref|YP_004036423.1| - 3.1 8.5 13.0 1.4 9.5 0.3 4.1 3 1 0 4 4 3 0 SlyX MafB PF06255.13 gi|313126153|ref|YP_004036423.1| - 3.4 7.0 15.2 1 8.7 2.6 2.2 2 0 0 2 2 2 0 Neisseria toxin MafB CorA PF01544.18 gi|313126153|ref|YP_004036423.1| - 3.7 6.8 20.6 2.4 7.4 4.9 3.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein RecG_N PF17190.4 gi|313126153|ref|YP_004036423.1| - 4 8.2 6.4 61 4.4 0.0 4.3 3 2 1 5 5 5 0 RecG N-terminal helical domain DUF4559 PF15112.6 gi|313126153|ref|YP_004036423.1| - 4.5 6.9 15.6 0.19 11.4 3.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) MscS_porin PF12795.7 gi|313126153|ref|YP_004036423.1| - 4.7 6.7 19.3 0.02 14.4 1.6 3.2 2 2 0 3 3 3 0 Mechanosensitive ion channel porin domain LRRFIP PF09738.9 gi|313126153|ref|YP_004036423.1| - 4.7 6.6 22.9 0.012 15.1 7.8 2.6 2 1 1 3 3 2 0 LRRFIP family Jnk-SapK_ap_N PF09744.9 gi|313126153|ref|YP_004036423.1| - 5.3 7.2 25.7 0.33 11.2 4.4 3.2 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 HIP1_clath_bdg PF16515.5 gi|313126153|ref|YP_004036423.1| - 5.6 7.6 23.0 16 6.2 0.7 5.0 3 2 2 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Goodbye PF17109.5 gi|313126153|ref|YP_004036423.1| - 5.7 7.4 9.0 1.8 9.0 1.1 3.4 2 2 1 4 4 3 0 fungal STAND N-terminal Goodbye domain Cauli_AT PF03233.13 gi|313126153|ref|YP_004036423.1| - 5.8 6.8 10.0 2.1 8.3 0.4 3.7 2 2 1 4 4 4 0 Aphid transmission protein Spectrin PF00435.21 gi|313126153|ref|YP_004036423.1| - 7.6 7.1 16.1 24 5.5 1.4 4.7 1 1 4 5 5 5 0 Spectrin repeat DUF1759 PF03564.15 gi|313126153|ref|YP_004036423.1| - 7.7 6.4 8.6 7.6 6.5 0.1 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1759) DUF2203 PF09969.9 gi|313126153|ref|YP_004036423.1| - 7.9 7.2 21.0 8.4 7.1 0.9 4.4 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2203) FlaC_arch PF05377.11 gi|313126153|ref|YP_004036423.1| - 9.9 6.6 19.3 11 6.5 0.5 5.9 2 2 3 5 5 5 0 Flagella accessory protein C (FlaC) MS_channel PF00924.18 gi|313126154|ref|YP_004036424.1| - 1.4e-43 148.9 0.1 2.4e-43 148.1 0.1 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel SHOCT PF09851.9 gi|313126155|ref|YP_004036425.1| - 6.5e-09 35.2 2.1 9.4e-09 34.7 2.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|313126155|ref|YP_004036425.1| - 0.00016 21.7 3.5 0.00026 21.0 3.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF4936 PF16290.5 gi|313126155|ref|YP_004036425.1| - 0.00094 19.8 0.1 0.0013 19.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4936) Phage_holin_3_6 PF07332.11 gi|313126155|ref|YP_004036425.1| - 0.068 13.2 1.7 0.11 12.5 1.7 1.4 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF202 PF02656.15 gi|313126155|ref|YP_004036425.1| - 1.7 9.2 5.6 11 6.5 5.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Radical_SAM PF04055.21 gi|313126156|ref|YP_004036426.1| - 4.5e-25 89.0 0.0 1.5e-24 87.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|313126156|ref|YP_004036426.1| - 3.5e-24 84.6 0.1 6.3e-24 83.8 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|313126156|ref|YP_004036426.1| - 1.6e-09 38.1 0.1 3.5e-09 36.9 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313126156|ref|YP_004036426.1| - 1.6e-05 24.8 0.1 3.7e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313126156|ref|YP_004036426.1| - 0.045 14.2 0.1 0.089 13.2 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_IclR PF09339.10 gi|313126157|ref|YP_004036427.1| - 0.00055 19.7 0.6 0.0038 17.0 0.1 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain Pro-kuma_activ PF09286.11 gi|313126157|ref|YP_004036427.1| - 0.0057 17.0 0.0 0.0082 16.4 0.0 1.2 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain MarR_2 PF12802.7 gi|313126157|ref|YP_004036427.1| - 0.0099 15.7 0.1 0.0099 15.7 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|313126157|ref|YP_004036427.1| - 0.097 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|313126157|ref|YP_004036427.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB tRNA_anti-codon PF01336.25 gi|313126159|ref|YP_004036429.1| - 2.1e-09 37.2 0.4 4.9e-09 36.1 0.4 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|313126159|ref|YP_004036429.1| - 3.8e-08 33.5 3.6 1.5e-07 31.7 0.0 3.4 4 0 0 4 4 4 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|313126159|ref|YP_004036429.1| - 0.051 13.8 0.0 0.18 12.0 0.0 1.9 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Yip1 PF04893.17 gi|313126160|ref|YP_004036430.1| - 1.5e-12 47.6 16.7 2.1e-12 47.1 16.7 1.2 1 0 0 1 1 1 1 Yip1 domain DUF2631 PF10939.8 gi|313126160|ref|YP_004036430.1| - 0.048 13.5 1.6 2.4 8.1 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) TK PF00265.18 gi|313126161|ref|YP_004036431.1| - 5.2e-51 173.0 0.0 5.9e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_30 PF13604.6 gi|313126161|ref|YP_004036431.1| - 0.034 13.9 0.2 0.075 12.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain DZR PF12773.7 gi|313126161|ref|YP_004036431.1| - 0.23 11.5 1.5 0.48 10.5 1.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon FMN_red PF03358.15 gi|313126162|ref|YP_004036432.1| - 1.3e-32 112.7 0.0 1.6e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|313126162|ref|YP_004036432.1| - 1.7e-09 37.7 0.0 2.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|313126162|ref|YP_004036432.1| - 0.055 13.7 0.0 0.078 13.2 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain DrsE PF02635.15 gi|313126163|ref|YP_004036433.1| - 1.7e-09 38.0 0.0 2.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|313126163|ref|YP_004036433.1| - 0.0086 16.2 0.1 0.011 15.9 0.1 1.2 1 0 0 1 1 1 1 DsrH like protein Cyclophil_like PF04126.13 gi|313126163|ref|YP_004036433.1| - 0.06 13.2 0.0 0.066 13.0 0.0 1.2 1 0 0 1 1 1 0 Cyclophilin-like ArsP_2 PF11449.8 gi|313126164|ref|YP_004036434.1| - 4.1e-133 444.0 18.6 4.7e-133 443.9 18.6 1.0 1 0 0 1 1 1 1 Putative, 10TM heavy-metal exporter Usp PF00582.26 gi|313126165|ref|YP_004036435.1| - 4.4e-37 127.7 1.0 5.1e-37 127.5 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family SMC_ScpB PF04079.16 gi|313126165|ref|YP_004036435.1| - 0.019 14.6 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB SIR4_SID PF16991.5 gi|313126165|ref|YP_004036435.1| - 0.18 11.8 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Sir4 SID domain HTH_10 PF04967.12 gi|313126166|ref|YP_004036436.1| - 1.4e-19 69.6 0.0 2.3e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|313126166|ref|YP_004036436.1| - 0.00038 20.1 0.3 0.0024 17.5 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|313126166|ref|YP_004036436.1| - 0.0025 17.3 0.3 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|313126166|ref|YP_004036436.1| - 0.0026 17.5 0.0 0.0079 15.9 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313126166|ref|YP_004036436.1| - 0.008 15.7 0.0 0.019 14.5 0.0 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|313126166|ref|YP_004036436.1| - 0.013 15.1 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313126166|ref|YP_004036436.1| - 0.028 14.3 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313126166|ref|YP_004036436.1| - 0.032 14.1 0.1 0.079 12.9 0.1 1.6 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|313126166|ref|YP_004036436.1| - 0.044 14.0 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|313126166|ref|YP_004036436.1| - 0.049 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 gi|313126166|ref|YP_004036436.1| - 0.052 13.6 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|313126166|ref|YP_004036436.1| - 0.056 13.2 0.1 0.17 11.7 0.1 1.7 1 1 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.6 gi|313126166|ref|YP_004036436.1| - 0.079 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NAD_binding_10 PF13460.6 gi|313126167|ref|YP_004036437.1| - 3.4e-21 76.0 1.4 5.4e-21 75.3 1.4 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|313126167|ref|YP_004036437.1| - 4.2e-20 72.3 0.1 5.1e-20 72.0 0.1 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|313126167|ref|YP_004036437.1| - 8.8e-13 48.3 0.1 1.6e-12 47.4 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313126167|ref|YP_004036437.1| - 3.3e-10 39.4 0.0 4.6e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|313126167|ref|YP_004036437.1| - 2.3e-07 30.2 1.2 5.9e-07 28.9 0.7 1.9 2 1 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|313126167|ref|YP_004036437.1| - 0.0011 18.2 2.2 0.046 12.8 2.2 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|313126167|ref|YP_004036437.1| - 0.01 15.3 0.5 0.032 13.7 0.5 1.7 1 1 0 1 1 1 0 short chain dehydrogenase GDP_Man_Dehyd PF16363.5 gi|313126167|ref|YP_004036437.1| - 0.012 15.1 0.2 0.053 12.9 0.2 1.9 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase KR PF08659.10 gi|313126167|ref|YP_004036437.1| - 0.012 15.6 0.6 0.032 14.2 0.6 1.8 1 1 0 1 1 1 0 KR domain F420_oxidored PF03807.17 gi|313126167|ref|YP_004036437.1| - 0.034 14.7 0.1 0.092 13.3 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|313126167|ref|YP_004036437.1| - 0.05 13.7 0.2 0.084 13.0 0.2 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DFP PF04127.15 gi|313126167|ref|YP_004036437.1| - 0.14 11.9 0.8 0.22 11.3 0.8 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_binding_4 PF07993.12 gi|313126167|ref|YP_004036437.1| - 0.46 9.6 4.9 16 4.6 1.1 2.9 1 1 1 3 3 3 0 Male sterility protein HhH-GPD PF00730.25 gi|313126168|ref|YP_004036438.1| - 4.2e-16 59.4 0.0 6e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|313126168|ref|YP_004036438.1| - 1.3e-09 37.4 0.0 2.6e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|313126168|ref|YP_004036438.1| - 0.75 10.2 3.2 1.6 9.1 3.2 1.6 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III FAD_binding_3 PF01494.19 gi|313126169|ref|YP_004036439.1| - 3.6e-44 151.4 0.0 4.4e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|313126169|ref|YP_004036439.1| - 2.1e-08 33.7 0.2 0.00042 19.5 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|313126169|ref|YP_004036439.1| - 0.00029 20.1 0.0 0.001 18.4 0.0 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|313126169|ref|YP_004036439.1| - 0.00031 20.9 0.2 0.0017 18.6 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|313126169|ref|YP_004036439.1| - 0.00035 19.7 3.9 0.027 13.5 0.1 2.6 3 0 0 3 3 3 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|313126169|ref|YP_004036439.1| - 0.00084 18.7 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|313126169|ref|YP_004036439.1| - 0.005 16.0 0.0 0.01 14.9 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|313126169|ref|YP_004036439.1| - 0.0055 16.3 1.8 0.11 12.1 0.2 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase SE PF08491.10 gi|313126169|ref|YP_004036439.1| - 0.011 14.8 0.0 0.024 13.7 0.0 1.5 2 0 0 2 2 2 0 Squalene epoxidase Pyr_redox PF00070.27 gi|313126169|ref|YP_004036439.1| - 0.014 15.9 0.3 0.038 14.6 0.1 1.8 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|313126169|ref|YP_004036439.1| - 0.033 13.8 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 gi|313126169|ref|YP_004036439.1| - 0.037 12.7 0.0 0.056 12.1 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein FAD_oxidored PF12831.7 gi|313126169|ref|YP_004036439.1| - 0.058 12.7 0.4 0.1 11.9 0.4 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF2824 PF11039.8 gi|313126169|ref|YP_004036439.1| - 0.081 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2824) Pyr_redox_3 PF13738.6 gi|313126169|ref|YP_004036439.1| - 0.097 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|313126169|ref|YP_004036439.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.2 1 0 0 1 1 1 0 ThiF family GDI PF00996.18 gi|313126169|ref|YP_004036439.1| - 0.2 10.1 0.0 0.41 9.1 0.0 1.4 2 0 0 2 2 2 0 GDP dissociation inhibitor HTH_10 PF04967.12 gi|313126170|ref|YP_004036440.1| - 1.9e-18 66.0 0.1 2.7e-18 65.5 0.1 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|313126170|ref|YP_004036440.1| - 0.00073 19.2 0.1 0.0012 18.4 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|313126170|ref|YP_004036440.1| - 0.00078 18.9 0.0 0.0091 15.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|313126170|ref|YP_004036440.1| - 0.0026 17.2 0.0 0.0056 16.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313126170|ref|YP_004036440.1| - 0.0062 16.4 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313126170|ref|YP_004036440.1| - 0.025 14.6 0.9 0.052 13.6 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|313126170|ref|YP_004036440.1| - 0.059 13.1 0.0 0.15 11.8 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain MCPsignal PF00015.21 gi|313126173|ref|YP_004036443.1| - 8.4e-41 139.6 53.6 4.3e-40 137.3 20.9 5.1 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|313126173|ref|YP_004036443.1| - 2.5e-12 47.0 16.7 2.8e-07 30.8 0.1 6.1 6 1 0 6 6 5 2 HAMP domain dCache_1 PF02743.18 gi|313126173|ref|YP_004036443.1| - 1.5e-06 28.2 1.3 1.5e-06 28.2 1.3 3.7 3 1 1 4 4 4 1 Cache domain EzrA PF06160.12 gi|313126173|ref|YP_004036443.1| - 0.00023 19.5 6.4 0.00023 19.5 6.4 2.8 2 1 0 2 2 2 1 Septation ring formation regulator, EzrA TLP1_add_C PF18313.1 gi|313126173|ref|YP_004036443.1| - 0.007 16.3 2.7 0.025 14.5 0.0 3.1 3 0 0 3 3 2 1 Thiolase-like protein type 1 additional C-terminal domain DUF948 PF06103.11 gi|313126173|ref|YP_004036443.1| - 0.012 15.8 3.3 0.012 15.8 3.3 6.2 4 2 2 6 6 4 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|313126173|ref|YP_004036443.1| - 0.059 13.4 21.5 0.84 9.7 2.8 5.5 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) TBCC_N PF16752.5 gi|313126173|ref|YP_004036443.1| - 0.059 13.8 23.6 0.13 12.7 2.3 4.7 2 2 2 5 5 5 0 Tubulin-specific chaperone C N-terminal domain CorA PF01544.18 gi|313126173|ref|YP_004036443.1| - 0.066 12.5 13.8 2.7 7.2 0.9 4.0 1 1 2 4 4 4 0 CorA-like Mg2+ transporter protein Mt_ATP-synt_B PF05405.14 gi|313126173|ref|YP_004036443.1| - 0.067 12.8 0.1 0.067 12.8 0.1 3.6 3 1 1 4 4 4 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) IFT57 PF10498.9 gi|313126173|ref|YP_004036443.1| - 0.08 11.9 11.6 0.72 8.8 0.2 2.9 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 DASH_Dam1 PF08653.10 gi|313126173|ref|YP_004036443.1| - 0.1 12.4 7.1 1.9 8.3 0.1 4.8 5 1 1 6 6 6 0 DASH complex subunit Dam1 Spc7 PF08317.11 gi|313126173|ref|YP_004036443.1| - 0.16 10.8 21.8 0.17 10.8 3.2 2.7 1 1 0 2 2 2 0 Spc7 kinetochore protein YkyA PF10368.9 gi|313126173|ref|YP_004036443.1| - 0.22 11.2 21.8 3.5 7.3 10.8 3.3 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein RmuC PF02646.16 gi|313126173|ref|YP_004036443.1| - 0.22 10.6 16.2 0.81 8.8 1.0 3.9 4 1 0 4 4 3 0 RmuC family Nup88 PF10168.9 gi|313126173|ref|YP_004036443.1| - 0.24 9.2 10.1 0.26 9.0 0.4 2.2 2 0 0 2 2 2 0 Nuclear pore component WXG100 PF06013.12 gi|313126173|ref|YP_004036443.1| - 0.28 11.4 29.3 0.15 12.3 4.2 6.4 2 2 3 5 5 5 0 Proteins of 100 residues with WXG Fib_alpha PF08702.10 gi|313126173|ref|YP_004036443.1| - 0.31 11.2 10.0 1.3 9.2 0.4 4.1 1 1 5 6 6 6 0 Fibrinogen alpha/beta chain family PI3K_P85_iSH2 PF16454.5 gi|313126173|ref|YP_004036443.1| - 0.32 10.6 4.6 2 8.0 0.1 3.3 2 2 1 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain AIP3 PF03915.13 gi|313126173|ref|YP_004036443.1| - 0.54 9.3 15.3 0.22 10.6 2.3 2.5 1 1 0 2 2 2 0 Actin interacting protein 3 MAD PF05557.13 gi|313126173|ref|YP_004036443.1| - 0.64 8.3 15.0 0.097 11.0 9.8 2.0 1 1 0 1 1 1 0 Mitotic checkpoint protein BAR_2 PF10455.9 gi|313126173|ref|YP_004036443.1| - 0.74 8.9 16.1 0.059 12.5 2.5 2.9 2 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking TMPIT PF07851.13 gi|313126173|ref|YP_004036443.1| - 0.76 9.0 10.6 3.9 6.6 0.1 3.3 2 1 1 3 3 3 0 TMPIT-like protein DASH_Dad2 PF08654.10 gi|313126173|ref|YP_004036443.1| - 0.88 10.0 21.1 0.3 11.5 2.3 5.0 3 2 1 5 5 5 0 DASH complex subunit Dad2 BLOC1_2 PF10046.9 gi|313126173|ref|YP_004036443.1| - 0.94 9.8 19.3 4.1 7.8 0.3 5.2 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.9 gi|313126173|ref|YP_004036443.1| - 0.97 8.5 4.8 3.5 6.6 1.1 2.4 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|313126173|ref|YP_004036443.1| - 1 7.2 11.7 0.14 10.1 5.7 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Sec34 PF04136.15 gi|313126173|ref|YP_004036443.1| - 1.2 9.0 12.0 4.1 7.3 0.2 4.5 2 2 3 5 5 5 0 Sec34-like family ATG16 PF08614.11 gi|313126173|ref|YP_004036443.1| - 1.3 9.2 26.3 5.4 7.2 4.7 2.9 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) APG17 PF04108.12 gi|313126173|ref|YP_004036443.1| - 2.1 7.4 20.8 1.7e+02 1.1 20.8 2.6 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF725 PF05267.12 gi|313126173|ref|YP_004036443.1| - 2.6 8.1 12.7 0.21 11.6 2.6 3.6 3 1 0 3 3 2 0 Protein of unknown function (DUF725) Taxilin PF09728.9 gi|313126173|ref|YP_004036443.1| - 3.5 6.7 7.5 2 7.5 4.2 2.1 2 0 0 2 2 2 0 Myosin-like coiled-coil protein Flagellar_rod PF05149.12 gi|313126173|ref|YP_004036443.1| - 3.9 6.9 13.4 0.81 9.1 2.6 3.4 3 1 1 4 4 3 0 Paraflagellar rod protein Bacillus_HBL PF05791.11 gi|313126173|ref|YP_004036443.1| - 4.5 7.1 6.2 1.7 8.4 0.8 3.0 3 2 0 3 3 2 0 Bacillus haemolytic enterotoxin (HBL) PhageMin_Tail PF10145.9 gi|313126173|ref|YP_004036443.1| - 4.6 7.1 37.1 0.73 9.7 16.2 3.1 1 1 2 3 3 3 0 Phage-related minor tail protein DUF3450 PF11932.8 gi|313126173|ref|YP_004036443.1| - 5.5 6.2 26.7 0.23 10.7 2.6 4.3 3 2 1 4 4 4 0 Protein of unknown function (DUF3450) I_LWEQ PF01608.17 gi|313126173|ref|YP_004036443.1| - 5.8 7.1 31.0 0.39 11.0 10.0 3.6 1 1 2 3 3 3 0 I/LWEQ domain GAS PF13851.6 gi|313126173|ref|YP_004036443.1| - 7.2 5.9 13.1 12 5.2 0.1 3.3 3 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding COG5 PF10392.9 gi|313126173|ref|YP_004036443.1| - 8.6 6.5 7.0 25 5.0 0.1 3.2 4 0 0 4 4 2 0 Golgi transport complex subunit 5 DASH_Spc19 PF08287.11 gi|313126173|ref|YP_004036443.1| - 9.8 6.0 15.5 1.2 9.0 3.8 2.9 3 1 0 3 3 2 0 Spc19 COG2 PF06148.11 gi|313126173|ref|YP_004036443.1| - 9.9 6.3 19.7 6.1 6.9 1.4 5.1 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 BolA PF01722.18 gi|313126175|ref|YP_004036445.1| - 5.1e-20 71.5 0.0 5.6e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein ABC_tran PF00005.27 gi|313126176|ref|YP_004036446.1| - 6.8e-32 110.9 0.0 1.2e-31 110.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|313126176|ref|YP_004036446.1| - 3e-10 40.8 0.0 1.3e-09 38.7 0.0 2.2 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|313126176|ref|YP_004036446.1| - 1.2e-06 28.5 0.2 6.5e-06 26.2 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|313126176|ref|YP_004036446.1| - 2.1e-06 27.8 0.0 0.046 13.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|313126176|ref|YP_004036446.1| - 4.5e-05 23.7 0.1 0.00013 22.1 0.0 1.9 2 0 0 2 2 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|313126176|ref|YP_004036446.1| - 0.00025 21.6 0.0 0.0024 18.4 0.0 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain Rad17 PF03215.15 gi|313126176|ref|YP_004036446.1| - 0.00086 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|313126176|ref|YP_004036446.1| - 0.00086 19.6 0.0 0.0031 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|313126176|ref|YP_004036446.1| - 0.0012 18.4 0.0 0.043 13.3 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|313126176|ref|YP_004036446.1| - 0.0019 18.1 0.2 0.0039 17.1 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 gi|313126176|ref|YP_004036446.1| - 0.0031 17.1 0.3 0.53 9.8 0.0 3.2 3 1 1 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|313126176|ref|YP_004036446.1| - 0.0032 17.9 0.0 0.0094 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 gi|313126176|ref|YP_004036446.1| - 0.0055 16.5 0.0 0.041 13.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|313126176|ref|YP_004036446.1| - 0.0082 15.9 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|313126176|ref|YP_004036446.1| - 0.01 16.2 0.0 0.061 13.7 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|313126176|ref|YP_004036446.1| - 0.047 13.4 0.1 0.12 12.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313126176|ref|YP_004036446.1| - 0.052 13.7 0.0 0.13 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|313126176|ref|YP_004036446.1| - 0.14 12.1 0.0 0.36 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|313126176|ref|YP_004036446.1| - 0.17 12.4 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|313126177|ref|YP_004036447.1| - 4.5e-17 62.4 13.9 8.9e-17 61.4 13.9 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Deltameth_res PF16020.5 gi|313126177|ref|YP_004036447.1| - 2.1 8.3 7.0 7.6 6.5 0.3 3.4 2 2 0 2 2 2 0 Deltamethrin resistance BPD_transp_1 PF00528.22 gi|313126178|ref|YP_004036448.1| - 8.7e-21 74.5 19.5 8.7e-21 74.5 19.5 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|313126179|ref|YP_004036449.1| - 1.2e-28 100.7 1.2 1.7e-28 100.2 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313126179|ref|YP_004036449.1| - 3.5e-19 69.9 6.1 4.6e-19 69.5 6.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|313126179|ref|YP_004036449.1| - 0.0011 18.4 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|313126179|ref|YP_004036449.1| - 0.015 15.1 5.6 0.029 14.2 5.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lyase_1 PF00206.20 gi|313126180|ref|YP_004036450.1| - 2.8e-107 358.7 0.0 4.1e-107 358.2 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|313126180|ref|YP_004036450.1| - 1.8e-26 92.3 0.4 7e-26 90.4 0.4 2.1 1 0 0 1 1 1 1 Fumarase C C-terminus zf-C2H2_6 PF13912.6 gi|313126181|ref|YP_004036451.1| - 0.00012 22.0 0.5 0.32 11.1 0.1 2.3 2 0 0 2 2 2 2 C2H2-type zinc finger RNA_POL_M_15KD PF02150.16 gi|313126181|ref|YP_004036451.1| - 0.00023 20.9 2.1 0.011 15.6 0.1 2.2 1 1 1 2 2 2 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|313126181|ref|YP_004036451.1| - 0.00065 19.8 1.5 0.00092 19.3 1.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|313126181|ref|YP_004036451.1| - 0.0014 18.7 0.1 0.0014 18.6 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|313126181|ref|YP_004036451.1| - 0.0031 16.9 2.0 0.58 9.7 0.4 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|313126181|ref|YP_004036451.1| - 0.0043 17.0 0.8 0.0052 16.8 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon C1_2 PF03107.16 gi|313126181|ref|YP_004036451.1| - 0.0059 16.9 0.3 0.0077 16.5 0.3 1.2 1 0 0 1 1 1 1 C1 domain TackOD1 PF18551.1 gi|313126181|ref|YP_004036451.1| - 0.012 15.3 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_10 PF10058.9 gi|313126181|ref|YP_004036451.1| - 0.021 14.5 1.3 0.032 14.0 1.3 1.3 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|313126181|ref|YP_004036451.1| - 0.022 14.7 1.5 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|313126181|ref|YP_004036451.1| - 0.022 15.2 0.5 4.3 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|313126181|ref|YP_004036451.1| - 0.026 14.1 1.4 3.6 7.3 0.3 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Fer4_18 PF13746.6 gi|313126181|ref|YP_004036451.1| - 0.053 13.7 0.0 0.056 13.6 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S dicluster domain zf-C2H2_4 PF13894.6 gi|313126181|ref|YP_004036451.1| - 0.075 13.9 1.6 12 7.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Tmemb_55A PF09788.9 gi|313126181|ref|YP_004036451.1| - 0.14 11.2 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A LIM PF00412.22 gi|313126181|ref|YP_004036451.1| - 0.14 12.4 2.1 0.42 10.9 2.2 1.6 1 1 1 2 2 2 0 LIM domain zf-CSL PF05207.13 gi|313126181|ref|YP_004036451.1| - 0.15 11.8 2.9 4.1 7.2 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger zinc_ribbon_12 PF11331.8 gi|313126181|ref|YP_004036451.1| - 0.17 11.7 1.6 0.32 10.8 0.1 1.9 2 0 0 2 2 2 0 Probable zinc-ribbon domain Elf1 PF05129.13 gi|313126181|ref|YP_004036451.1| - 0.17 11.9 0.9 8.5 6.5 0.1 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like GatB_N PF02934.15 gi|313126182|ref|YP_004036452.1| - 9.8e-66 221.9 0.0 1.3e-65 221.5 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|313126182|ref|YP_004036452.1| - 1.3e-23 83.5 0.1 2.1e-23 82.9 0.1 1.3 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|313126182|ref|YP_004036452.1| - 7.9e-15 54.9 0.0 1.7e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|313126182|ref|YP_004036452.1| - 0.0016 18.5 0.5 0.0033 17.5 0.5 1.5 1 0 0 1 1 1 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.15 gi|313126182|ref|YP_004036452.1| - 0.11 12.5 0.0 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 MaoC_dehydratas PF01575.19 gi|313126183|ref|YP_004036453.1| - 7.7e-05 22.3 0.4 0.0011 18.5 0.4 2.0 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313126183|ref|YP_004036453.1| - 7.8e-05 22.8 0.5 0.014 15.5 0.5 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase HAMP PF00672.25 gi|313126183|ref|YP_004036453.1| - 0.11 12.9 0.0 0.18 12.2 0.0 1.5 1 1 0 1 1 1 0 HAMP domain Response_reg PF00072.24 gi|313126184|ref|YP_004036454.1| - 1e-18 67.5 0.0 2.3e-18 66.4 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|313126184|ref|YP_004036454.1| - 1.5e-17 63.7 0.3 5e-17 62.0 0.1 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|313126184|ref|YP_004036454.1| - 2.6e-09 37.0 1.7 8.9e-09 35.3 0.5 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain OKR_DC_1_N PF03709.15 gi|313126184|ref|YP_004036454.1| - 0.00018 21.7 0.1 0.00037 20.7 0.1 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_4 PF08448.10 gi|313126184|ref|YP_004036454.1| - 0.00047 20.4 0.3 0.0022 18.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold Methyltransf_24 PF13578.6 gi|313126184|ref|YP_004036454.1| - 0.0092 17.0 0.9 0.65 11.0 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain DUF4061 PF13270.6 gi|313126184|ref|YP_004036454.1| - 0.17 12.2 0.9 0.95 9.8 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4061) Peptidase_M48 PF01435.18 gi|313126185|ref|YP_004036455.1| - 3.1e-25 89.1 1.5 9.9e-14 51.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.11 gi|313126185|ref|YP_004036455.1| - 1.6e-05 24.3 0.1 4.7e-05 22.7 0.0 1.9 1 1 1 2 2 2 1 BlaR1 peptidase M56 MaoC_dehydratas PF01575.19 gi|313126186|ref|YP_004036456.1| - 1.7e-17 63.1 0.0 2.1e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain FabA PF07977.13 gi|313126186|ref|YP_004036456.1| - 9.2e-05 22.1 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain MaoC_dehydrat_N PF13452.6 gi|313126186|ref|YP_004036456.1| - 0.00035 20.7 0.0 0.00057 20.0 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase SpoU_methylase PF00588.19 gi|313126187|ref|YP_004036457.1| - 5.3e-30 104.5 0.0 9.3e-30 103.7 0.0 1.4 2 0 0 2 2 2 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|313126187|ref|YP_004036457.1| - 0.013 15.4 0.0 0.37 10.6 0.0 2.8 3 1 0 3 3 3 0 SAM-dependent RNA methyltransferase Response_reg PF00072.24 gi|313126189|ref|YP_004036459.1| - 3.3e-17 62.7 0.1 5.3e-17 62.0 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|313126189|ref|YP_004036459.1| - 1.4e-13 50.9 5.3 3.9e-13 49.5 5.3 1.8 1 0 0 1 1 1 1 HalX domain ThiI PF02568.14 gi|313126189|ref|YP_004036459.1| - 0.038 13.6 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF1152 PF06626.12 gi|313126189|ref|YP_004036459.1| - 0.046 12.9 0.4 0.1 11.8 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1152) Pterin_bind PF00809.22 gi|313126190|ref|YP_004036460.1| - 6.9e-38 130.7 0.1 1.2e-37 129.9 0.1 1.4 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.18 gi|313126191|ref|YP_004036461.1| - 1.1e-15 57.7 0.0 1.5e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 FAD_binding_7 PF03441.14 gi|313126193|ref|YP_004036463.1| - 1.4e-78 263.0 2.8 2e-78 262.5 2.8 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|313126193|ref|YP_004036463.1| - 1.2e-47 161.9 3.1 1.3e-46 158.6 0.7 2.3 2 0 0 2 2 2 1 DNA photolyase DUF2726 PF10881.8 gi|313126193|ref|YP_004036463.1| - 0.01 15.7 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2726) Usp PF00582.26 gi|313126193|ref|YP_004036463.1| - 0.093 13.2 0.1 0.093 13.2 0.1 2.6 2 1 0 2 2 2 0 Universal stress protein family DJ-1_PfpI PF01965.24 gi|313126194|ref|YP_004036464.1| - 7.7e-24 84.4 0.0 1.2e-23 83.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|313126194|ref|YP_004036464.1| - 0.0021 17.7 0.1 0.0057 16.3 0.1 1.5 1 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|313126194|ref|YP_004036464.1| - 0.021 13.9 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Fer2_2 PF01799.20 gi|313126194|ref|YP_004036464.1| - 0.091 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 [2Fe-2S] binding domain Sod_Fe_N PF00081.22 gi|313126195|ref|YP_004036465.1| - 2.5e-30 104.8 0.4 4e-30 104.1 0.4 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|313126195|ref|YP_004036465.1| - 1.2e-27 96.0 0.0 1.9e-27 95.4 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Lactamase_B PF00753.27 gi|313126198|ref|YP_004036468.1| - 9.6e-15 55.1 10.4 2.8e-13 50.3 10.4 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313126198|ref|YP_004036468.1| - 0.0048 16.4 3.5 0.0097 15.4 3.5 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Thymidylat_synt PF00303.19 gi|313126201|ref|YP_004036471.1| - 6.1e-94 314.1 0.0 7.5e-94 313.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DHFR_1 PF00186.19 gi|313126202|ref|YP_004036472.1| - 2e-46 157.7 0.0 2.3e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase ABC_ATPase PF09818.9 gi|313126202|ref|YP_004036472.1| - 0.086 11.6 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF1508 PF07411.12 gi|313126203|ref|YP_004036473.1| - 1.3e-24 85.8 0.2 1.5e-24 85.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) Proteasome PF00227.26 gi|313126204|ref|YP_004036474.1| - 1.1e-51 175.0 0.0 1.4e-51 174.7 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|313126204|ref|YP_004036474.1| - 2e-12 46.6 0.4 5.5e-12 45.1 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature MOSC_N PF03476.16 gi|313126205|ref|YP_004036475.1| - 3.2e-12 46.4 0.0 4.8e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|313126205|ref|YP_004036475.1| - 3.7e-06 27.0 0.0 8.3e-06 25.9 0.0 1.6 1 1 0 1 1 1 1 MOSC domain Amidohydro_1 PF01979.20 gi|313126206|ref|YP_004036476.1| - 1.8e-48 165.6 3.1 2.2e-48 165.3 3.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313126206|ref|YP_004036476.1| - 8.3e-19 68.4 9.4 4e-13 49.7 5.9 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF2270 PF10028.9 gi|313126207|ref|YP_004036477.1| - 1.6e-71 239.7 6.8 2e-71 239.4 6.8 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Oxidored_q2 PF00420.24 gi|313126207|ref|YP_004036477.1| - 0.046 13.3 0.1 0.65 9.7 0.0 2.2 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2975 PF11188.8 gi|313126207|ref|YP_004036477.1| - 0.37 10.7 3.5 2.9 7.8 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Lyase_aromatic PF00221.19 gi|313126208|ref|YP_004036478.1| - 8.2e-186 618.2 12.8 9.3e-186 618.0 12.8 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_1 PF01979.20 gi|313126209|ref|YP_004036479.1| - 1.3e-20 74.1 0.3 5.5e-19 68.7 0.3 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313126209|ref|YP_004036479.1| - 7.2e-12 45.5 8.9 1.3e-06 28.1 4.3 2.5 1 1 0 1 1 1 1 Amidohydrolase family Arginase PF00491.21 gi|313126210|ref|YP_004036480.1| - 1.3e-61 208.5 1.0 1.6e-61 208.2 1.0 1.0 1 0 0 1 1 1 1 Arginase family TraB PF01963.17 gi|313126210|ref|YP_004036480.1| - 0.14 12.0 0.0 2.9 7.7 0.0 2.1 2 0 0 2 2 2 0 TraB family Urocanase_C PF17392.2 gi|313126211|ref|YP_004036481.1| - 3e-86 287.9 0.1 4.7e-86 287.2 0.1 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|313126211|ref|YP_004036481.1| - 4.8e-85 284.5 0.0 6.3e-85 284.1 0.0 1.1 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|313126211|ref|YP_004036481.1| - 2.8e-57 191.9 0.0 4.9e-57 191.1 0.0 1.3 1 0 0 1 1 1 1 Urocanase N-terminal domain Ank_5 PF13857.6 gi|313126211|ref|YP_004036481.1| - 0.014 15.7 0.0 0.048 14.0 0.0 1.9 1 0 0 1 1 1 0 Ankyrin repeats (many copies) DUF2188 PF09954.9 gi|313126211|ref|YP_004036481.1| - 0.066 13.4 0.2 0.2 11.8 0.2 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) PPR_2 PF13041.6 gi|313126211|ref|YP_004036481.1| - 0.24 11.6 0.0 0.57 10.4 0.0 1.6 1 0 0 1 1 1 0 PPR repeat family HTH_10 PF04967.12 gi|313126212|ref|YP_004036482.1| - 1.2e-19 69.9 0.0 2.1e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|313126212|ref|YP_004036482.1| - 9.9e-06 25.0 0.1 2.5e-05 23.7 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|313126212|ref|YP_004036482.1| - 1.1e-05 24.9 0.0 7.9e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|313126212|ref|YP_004036482.1| - 0.00016 21.3 0.7 0.0019 17.8 0.2 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|313126212|ref|YP_004036482.1| - 0.0007 19.3 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|313126212|ref|YP_004036482.1| - 0.00078 19.4 0.1 0.0019 18.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|313126212|ref|YP_004036482.1| - 0.0017 18.2 0.1 0.0033 17.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|313126212|ref|YP_004036482.1| - 0.0058 16.2 0.2 0.022 14.3 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313126212|ref|YP_004036482.1| - 0.0074 16.3 0.1 0.042 13.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313126212|ref|YP_004036482.1| - 0.0083 16.0 0.3 0.44 10.5 0.2 2.5 2 1 0 2 2 2 1 MarR family TetR_N PF00440.23 gi|313126212|ref|YP_004036482.1| - 0.017 14.9 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_28 PF13518.6 gi|313126212|ref|YP_004036482.1| - 0.045 13.9 0.2 0.11 12.6 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|313126212|ref|YP_004036482.1| - 0.049 13.8 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|313126212|ref|YP_004036482.1| - 0.049 13.6 0.1 0.32 11.0 0.2 2.2 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family LexA_DNA_bind PF01726.16 gi|313126212|ref|YP_004036482.1| - 0.13 12.1 0.1 0.47 10.3 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_30 PF13556.6 gi|313126212|ref|YP_004036482.1| - 0.14 11.9 2.3 0.9 9.4 0.5 2.5 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_36 PF13730.6 gi|313126212|ref|YP_004036482.1| - 0.2 11.6 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MMR_HSR1_C PF08438.10 gi|313126214|ref|YP_004036484.1| - 1.1e-27 96.9 0.0 1.9e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|313126214|ref|YP_004036484.1| - 1.8e-21 76.3 0.0 1.6e-19 70.0 0.0 3.0 3 1 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|313126214|ref|YP_004036484.1| - 1.9e-11 43.8 0.0 4.2e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|313126214|ref|YP_004036484.1| - 4.6e-05 23.0 0.0 0.00031 20.3 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|313126214|ref|YP_004036484.1| - 0.0065 16.5 0.2 0.54 10.3 0.0 3.1 3 0 0 3 3 3 1 Dynamin family GTP_EFTU PF00009.27 gi|313126214|ref|YP_004036484.1| - 0.063 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|313126214|ref|YP_004036484.1| - 0.1 12.8 0.0 0.78 10.0 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase bMG3 PF11974.8 gi|313126217|ref|YP_004036487.1| - 2.3e-07 30.8 20.1 0.037 14.0 2.3 3.4 1 1 1 3 3 3 3 Bacterial alpha-2-macroglobulin MG3 domain Big_6 PF17936.1 gi|313126217|ref|YP_004036487.1| - 9.5e-05 22.6 47.2 0.0035 17.6 8.3 5.1 4 1 0 4 4 4 2 Bacterial Ig domain DUF1939 PF09154.10 gi|313126217|ref|YP_004036487.1| - 0.00049 20.2 3.5 0.4 10.9 0.1 4.1 3 1 1 4 4 4 1 Domain of unknown function (DUF1939) Bile_Hydr_Trans PF04775.14 gi|313126217|ref|YP_004036487.1| - 0.0029 17.7 3.4 7.3 6.7 0.1 3.8 3 1 0 3 3 3 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region DUF4249 PF14054.6 gi|313126217|ref|YP_004036487.1| - 0.011 15.4 29.4 0.28 10.8 4.3 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4249) Big_1 PF02369.16 gi|313126217|ref|YP_004036487.1| - 0.011 15.7 4.6 0.011 15.7 4.6 7.1 4 2 3 7 7 7 0 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|313126217|ref|YP_004036487.1| - 0.024 14.8 18.7 0.74 10.0 1.9 4.0 2 1 1 3 3 3 0 Macroglobulin domain MG4 DUF5640 PF18692.1 gi|313126217|ref|YP_004036487.1| - 0.056 13.5 2.5 9.6 6.3 0.0 3.5 1 1 3 4 4 4 0 Family of unknown function (DUF5640) PUA_3 PF17785.1 gi|313126217|ref|YP_004036487.1| - 0.18 11.7 4.3 3 7.7 0.1 3.2 3 0 0 3 3 3 0 PUA-like domain DBB PF14545.6 gi|313126217|ref|YP_004036487.1| - 0.22 11.4 4.1 4.6 7.2 0.2 3.3 2 1 2 4 4 4 0 Dof, BCAP, and BANK (DBB) motif, Calx-beta PF03160.14 gi|313126217|ref|YP_004036487.1| - 0.53 10.5 30.3 0.078 13.1 5.4 3.4 1 1 2 3 3 3 0 Calx-beta domain DUF3244 PF11589.8 gi|313126217|ref|YP_004036487.1| - 1.3 9.1 19.0 11 6.2 0.4 4.7 3 1 2 5 5 5 0 Domain of unknown function (DUF3244) RR_TM4-6 PF06459.12 gi|313126217|ref|YP_004036487.1| - 5.1 6.8 9.4 11 5.7 9.4 1.7 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 TBP PF00352.21 gi|313126218|ref|YP_004036488.1| - 1.2e-57 191.8 0.0 1.2e-27 95.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|313126218|ref|YP_004036488.1| - 2.2e-06 27.7 0.0 0.0037 17.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|313126218|ref|YP_004036488.1| - 0.024 14.9 0.0 4.2 7.7 0.0 2.6 2 1 0 2 2 2 0 Type IVb secretion, IcmS, effector-recruitment MarR_2 PF12802.7 gi|313126219|ref|YP_004036489.1| - 5e-06 26.3 0.0 1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 MarR family Crp PF00325.20 gi|313126219|ref|YP_004036489.1| - 0.0013 18.4 0.0 0.0045 16.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_IclR PF09339.10 gi|313126219|ref|YP_004036489.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313126219|ref|YP_004036489.1| - 0.0032 17.5 0.0 0.0082 16.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|313126219|ref|YP_004036489.1| - 0.007 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|313126219|ref|YP_004036489.1| - 0.0072 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|313126219|ref|YP_004036489.1| - 0.0094 15.8 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|313126219|ref|YP_004036489.1| - 0.0098 15.9 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AbiEi_4 PF13338.6 gi|313126219|ref|YP_004036489.1| - 0.013 15.6 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_23 PF13384.6 gi|313126219|ref|YP_004036489.1| - 0.03 14.1 0.1 0.062 13.1 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|313126219|ref|YP_004036489.1| - 0.085 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Cdc6_C PF09079.11 gi|313126220|ref|YP_004036490.1| - 1.4e-18 66.6 0.1 3.5e-18 65.3 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313126220|ref|YP_004036490.1| - 9e-16 58.4 0.2 2.8e-15 56.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313126220|ref|YP_004036490.1| - 2e-10 41.3 2.4 5.2e-10 40.0 0.3 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|313126220|ref|YP_004036490.1| - 6.8e-07 29.8 0.2 2.3e-06 28.1 0.2 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|313126220|ref|YP_004036490.1| - 2.5e-06 27.5 0.0 8.4e-06 25.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|313126220|ref|YP_004036490.1| - 7.3e-06 25.8 0.0 1.5e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|313126220|ref|YP_004036490.1| - 5.7e-05 23.1 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.14 gi|313126220|ref|YP_004036490.1| - 0.00021 21.4 0.1 0.00037 20.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.6 gi|313126220|ref|YP_004036490.1| - 0.00028 21.0 0.0 0.0017 18.5 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|313126220|ref|YP_004036490.1| - 0.00096 18.4 0.0 0.0017 17.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|313126220|ref|YP_004036490.1| - 0.0012 18.3 0.0 0.0024 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|313126220|ref|YP_004036490.1| - 0.0025 18.2 0.0 0.0052 17.2 0.0 1.6 1 0 0 1 1 1 1 RNA helicase DEAD PF00270.29 gi|313126220|ref|YP_004036490.1| - 0.0038 17.0 1.8 0.46 10.2 1.8 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|313126220|ref|YP_004036490.1| - 0.009 15.8 0.2 0.017 14.8 0.2 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|313126220|ref|YP_004036490.1| - 0.0094 15.5 0.2 0.028 13.9 0.2 1.7 1 1 1 2 2 2 1 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|313126220|ref|YP_004036490.1| - 0.0095 15.2 0.1 1 8.6 0.0 2.2 2 0 0 2 2 2 1 KAP family P-loop domain NB-ARC PF00931.22 gi|313126220|ref|YP_004036490.1| - 0.018 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.18 gi|313126220|ref|YP_004036490.1| - 0.02 14.2 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.17 gi|313126220|ref|YP_004036490.1| - 0.044 13.9 0.2 0.12 12.5 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain Mg_chelatase PF01078.21 gi|313126220|ref|YP_004036490.1| - 0.047 13.1 0.0 0.09 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.9 gi|313126220|ref|YP_004036490.1| - 0.05 12.8 0.0 0.06 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|313126220|ref|YP_004036490.1| - 0.07 12.6 2.3 9 5.7 0.0 2.9 2 1 1 3 3 3 0 PhoH-like protein AAA_10 PF12846.7 gi|313126220|ref|YP_004036490.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_assoc_2 PF16193.5 gi|313126220|ref|YP_004036490.1| - 0.11 12.9 1.3 1.2 9.5 0.4 2.7 2 1 0 2 2 2 0 AAA C-terminal domain IstB_IS21 PF01695.17 gi|313126220|ref|YP_004036490.1| - 0.11 12.2 0.3 0.62 9.8 0.1 2.1 1 1 1 2 2 2 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|313126220|ref|YP_004036490.1| - 0.13 12.7 0.1 0.26 11.8 0.1 1.9 1 1 0 1 1 1 0 ABC transporter ERCC3_RAD25_C PF16203.5 gi|313126222|ref|YP_004036492.1| - 2.9e-28 98.7 0.0 4.5e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|313126222|ref|YP_004036492.1| - 3.6e-17 62.9 0.0 9.7e-17 61.5 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|313126222|ref|YP_004036492.1| - 3.6e-14 52.2 0.0 6.8e-14 51.3 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|313126222|ref|YP_004036492.1| - 1.2e-13 51.4 0.0 7.2e-13 48.9 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|313126222|ref|YP_004036492.1| - 0.00019 21.2 0.0 0.00052 19.8 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase MarR_2 PF12802.7 gi|313126222|ref|YP_004036492.1| - 0.0026 17.6 0.6 0.0071 16.2 0.6 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313126222|ref|YP_004036492.1| - 0.0038 17.1 0.0 0.012 15.5 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313126222|ref|YP_004036492.1| - 0.012 15.5 0.0 0.033 14.1 0.0 1.8 1 0 0 1 1 1 0 MarR family AAA_30 PF13604.6 gi|313126222|ref|YP_004036492.1| - 0.015 15.0 0.0 0.036 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|313126222|ref|YP_004036492.1| - 0.016 15.5 0.4 0.13 12.5 0.4 2.5 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|313126222|ref|YP_004036492.1| - 0.026 14.1 0.2 0.33 10.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain Fe_dep_repress PF01325.19 gi|313126222|ref|YP_004036492.1| - 0.037 14.2 0.0 0.14 12.4 0.0 2.0 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|313126222|ref|YP_004036492.1| - 0.053 13.1 0.1 0.25 10.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2075 PF09848.9 gi|313126222|ref|YP_004036492.1| - 0.054 12.7 0.0 0.097 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF4283 PF14111.6 gi|313126222|ref|YP_004036492.1| - 0.081 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) AAA PF00004.29 gi|313126222|ref|YP_004036492.1| - 0.097 13.1 0.0 0.29 11.5 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|313126222|ref|YP_004036492.1| - 0.2 11.6 0.5 7.5 6.5 0.1 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF3482 PF11981.8 gi|313126222|ref|YP_004036492.1| - 0.6 9.5 4.7 0.14 11.5 0.1 2.3 3 1 0 3 3 3 0 Domain of unknown function (DUF3482) N6_Mtase PF02384.16 gi|313126224|ref|YP_004036494.1| - 1.1e-05 24.9 0.0 3e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|313126224|ref|YP_004036494.1| - 0.01 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Phageshock_PspD PF09584.10 gi|313126224|ref|YP_004036494.1| - 0.051 13.6 0.1 2.4 8.2 0.1 2.5 2 0 0 2 2 2 0 Phage shock protein PspD (Phageshock_PspD) UPF0020 PF01170.18 gi|313126224|ref|YP_004036494.1| - 0.12 12.1 0.0 0.37 10.4 0.0 1.8 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|313126224|ref|YP_004036494.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MaoC_dehydratas PF01575.19 gi|313126226|ref|YP_004036496.1| - 7.8e-25 86.8 0.0 1e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313126226|ref|YP_004036496.1| - 7.8e-09 35.8 0.0 1.3e-08 35.1 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|313126226|ref|YP_004036496.1| - 0.074 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Thioesterase superfamily YiiD_C PF09500.10 gi|313126226|ref|YP_004036496.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) Abhydrolase_1 PF00561.20 gi|313126227|ref|YP_004036497.1| - 3.5e-23 82.6 0.1 6.2e-22 78.5 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313126227|ref|YP_004036497.1| - 4.8e-23 82.9 6.2 5.6e-23 82.7 6.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313126227|ref|YP_004036497.1| - 2.5e-16 59.7 0.1 8.2e-16 58.0 0.1 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|313126227|ref|YP_004036497.1| - 0.00011 22.0 0.0 0.4 10.4 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|313126227|ref|YP_004036497.1| - 0.00028 20.4 0.2 0.0079 15.7 0.0 2.5 2 1 0 2 2 2 1 Prolyl oligopeptidase family DLH PF01738.18 gi|313126227|ref|YP_004036497.1| - 0.00033 20.3 0.1 0.005 16.4 0.1 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 gi|313126227|ref|YP_004036497.1| - 0.00052 20.1 0.1 0.0012 18.9 0.0 1.7 2 0 0 2 2 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|313126227|ref|YP_004036497.1| - 0.001 18.9 0.0 0.02 14.7 0.0 2.6 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Thioesterase PF00975.20 gi|313126227|ref|YP_004036497.1| - 0.0054 16.9 0.1 0.014 15.5 0.0 1.7 1 1 1 2 2 2 1 Thioesterase domain Ndr PF03096.14 gi|313126227|ref|YP_004036497.1| - 0.054 12.2 0.0 0.083 11.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF915 PF06028.11 gi|313126227|ref|YP_004036497.1| - 0.12 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) UPF0227 PF05728.12 gi|313126227|ref|YP_004036497.1| - 0.12 12.3 0.0 1.2 9.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) TetR_C_16 PF17920.1 gi|313126227|ref|YP_004036497.1| - 1.5 9.1 4.6 25 5.2 0.2 2.9 3 1 1 4 4 4 0 Tetracyclin repressor-like, C-terminal domain AMP-binding PF00501.28 gi|313126228|ref|YP_004036498.1| - 1.2e-90 304.2 0.0 1.7e-90 303.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313126228|ref|YP_004036498.1| - 9.5e-16 58.6 0.2 2.2e-15 57.4 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.12 gi|313126229|ref|YP_004036499.1| - 5.2e-14 51.8 0.0 8.3e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|313126229|ref|YP_004036499.1| - 0.035 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|313126229|ref|YP_004036499.1| - 0.097 12.7 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|313126229|ref|YP_004036499.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family UPF0122 PF04297.14 gi|313126229|ref|YP_004036499.1| - 0.15 12.3 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Peripla_BP_6 PF13458.6 gi|313126230|ref|YP_004036500.1| - 8.8e-62 209.7 15.1 1.2e-61 209.3 15.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|313126230|ref|YP_004036500.1| - 1.7e-16 60.2 3.8 4.5e-16 58.8 3.8 1.6 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|313126230|ref|YP_004036500.1| - 1.8e-06 27.3 0.3 3.5e-06 26.3 0.3 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region RuvA_N PF01330.21 gi|313126230|ref|YP_004036500.1| - 0.1 12.7 0.1 0.22 11.7 0.1 1.5 1 0 0 1 1 1 0 RuvA N terminal domain ABC_tran PF00005.27 gi|313126231|ref|YP_004036501.1| - 4.6e-23 82.3 0.0 6.6e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|313126231|ref|YP_004036501.1| - 4.5e-10 39.2 0.1 1.1e-09 37.9 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|313126231|ref|YP_004036501.1| - 1.8e-08 34.6 0.8 0.00062 19.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|313126231|ref|YP_004036501.1| - 1.5e-06 28.9 0.1 1.8e-06 28.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313126231|ref|YP_004036501.1| - 0.0012 18.6 0.5 0.0025 17.6 0.5 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|313126231|ref|YP_004036501.1| - 0.0094 15.4 0.1 0.12 11.8 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313126231|ref|YP_004036501.1| - 0.0095 15.7 0.2 0.018 14.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|313126231|ref|YP_004036501.1| - 0.0096 15.8 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|313126231|ref|YP_004036501.1| - 0.033 14.3 0.4 0.082 13.0 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|313126231|ref|YP_004036501.1| - 0.13 12.6 0.1 0.55 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|313126231|ref|YP_004036501.1| - 0.14 12.0 0.2 0.21 11.4 0.2 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_27 PF13514.6 gi|313126231|ref|YP_004036501.1| - 0.14 11.7 0.1 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|313126231|ref|YP_004036501.1| - 0.15 11.7 0.2 0.29 10.8 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|313126231|ref|YP_004036501.1| - 0.18 11.5 0.1 0.38 10.4 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain FeoB_N PF02421.18 gi|313126231|ref|YP_004036501.1| - 0.43 10.1 0.1 0.43 10.1 0.1 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B TsaE PF02367.17 gi|313126231|ref|YP_004036501.1| - 0.47 10.4 2.4 1.6 8.7 0.6 2.3 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|313126232|ref|YP_004036502.1| - 3.9e-31 108.4 0.0 5.1e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126232|ref|YP_004036502.1| - 6.2e-08 32.8 0.3 0.0026 17.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313126232|ref|YP_004036502.1| - 0.0012 18.5 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|313126232|ref|YP_004036502.1| - 0.003 17.8 0.2 0.016 15.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126232|ref|YP_004036502.1| - 0.0055 17.1 1.0 0.011 16.2 0.9 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.8 gi|313126232|ref|YP_004036502.1| - 0.0081 13.7 0.5 0.012 13.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_30 PF13604.6 gi|313126232|ref|YP_004036502.1| - 0.0082 15.9 1.4 0.026 14.3 1.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|313126232|ref|YP_004036502.1| - 0.0094 16.5 0.0 0.011 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|313126232|ref|YP_004036502.1| - 0.01 15.8 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MukB PF04310.12 gi|313126232|ref|YP_004036502.1| - 0.016 15.0 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_15 PF13175.6 gi|313126232|ref|YP_004036502.1| - 0.022 14.5 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|313126232|ref|YP_004036502.1| - 0.023 14.6 0.2 0.07 13.0 0.2 1.9 1 1 0 1 1 1 0 NTPase SMC_N PF02463.19 gi|313126232|ref|YP_004036502.1| - 0.026 14.0 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|313126232|ref|YP_004036502.1| - 0.03 13.9 0.5 0.28 10.7 0.1 2.2 1 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|313126232|ref|YP_004036502.1| - 0.03 13.5 0.1 0.05 12.8 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.22 gi|313126232|ref|YP_004036502.1| - 0.036 13.7 0.1 0.058 13.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|313126232|ref|YP_004036502.1| - 0.082 13.3 0.0 0.11 12.9 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|313126232|ref|YP_004036502.1| - 0.082 13.2 0.4 0.47 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|313126232|ref|YP_004036502.1| - 0.087 12.9 0.2 0.35 11.0 0.1 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313126232|ref|YP_004036502.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|313126232|ref|YP_004036502.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_2 PF02653.16 gi|313126233|ref|YP_004036503.1| - 2.9e-40 138.2 43.8 3.4e-40 137.9 43.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|313126234|ref|YP_004036504.1| - 4.8e-34 117.7 22.6 4.8e-34 117.7 22.6 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ACP_syn_III_C PF08541.10 gi|313126235|ref|YP_004036505.1| - 6.1e-16 58.4 0.1 7.1e-13 48.6 0.0 2.9 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|313126235|ref|YP_004036505.1| - 6.2e-10 38.8 0.3 1.2e-09 37.9 0.3 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|313126235|ref|YP_004036505.1| - 0.00048 19.6 0.1 0.001 18.5 0.0 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|313126235|ref|YP_004036505.1| - 0.00055 19.6 2.0 0.85 9.1 0.3 3.3 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain 4HBT_2 PF13279.6 gi|313126236|ref|YP_004036506.1| - 7.8e-16 58.7 0.0 9.2e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|313126236|ref|YP_004036506.1| - 6.1e-14 52.1 0.1 8.2e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|313126236|ref|YP_004036506.1| - 1.4e-10 40.9 0.1 7.6e-05 22.1 0.2 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase PTPS PF01242.19 gi|313126237|ref|YP_004036507.1| - 7.2e-24 84.1 0.0 8.9e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GYD PF08734.11 gi|313126237|ref|YP_004036507.1| - 0.022 14.7 0.1 0.043 13.8 0.0 1.4 1 1 0 1 1 1 0 GYD domain Radical_SAM PF04055.21 gi|313126238|ref|YP_004036508.1| - 2.5e-20 73.5 0.1 8.9e-20 71.7 0.1 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|313126238|ref|YP_004036508.1| - 3.6e-14 52.9 0.0 7.7e-14 51.8 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|313126238|ref|YP_004036508.1| - 3.3e-08 33.9 0.0 5.3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|313126238|ref|YP_004036508.1| - 0.029 14.3 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.13 gi|313126239|ref|YP_004036509.1| - 6e-72 241.5 0.1 6.9e-72 241.4 0.1 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|313126239|ref|YP_004036509.1| - 5.3e-05 22.9 0.0 0.00014 21.5 0.0 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|313126239|ref|YP_004036509.1| - 0.0005 19.0 0.0 0.00064 18.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|313126239|ref|YP_004036509.1| - 0.0064 16.2 0.1 0.0085 15.8 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|313126239|ref|YP_004036509.1| - 0.0098 15.0 0.0 0.014 14.5 0.0 1.3 1 1 0 1 1 1 1 NAD synthase Usp PF00582.26 gi|313126239|ref|YP_004036509.1| - 0.066 13.7 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Universal stress protein family DUF3626 PF12294.8 gi|313126240|ref|YP_004036510.1| - 0.17 10.9 0.0 0.18 10.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3626) ThiC_Rad_SAM PF01964.18 gi|313126241|ref|YP_004036511.1| - 3.4e-188 625.7 0.0 3.9e-188 625.5 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family EamA PF00892.20 gi|313126242|ref|YP_004036512.1| - 1.9e-28 99.3 30.4 5.3e-16 59.0 12.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family GTA_holin_3TM PF11351.8 gi|313126242|ref|YP_004036512.1| - 5 7.7 6.2 12 6.4 0.3 2.8 2 0 0 2 2 2 0 Holin of 3TMs, for gene-transfer release Response_reg PF00072.24 gi|313126243|ref|YP_004036513.1| - 3.9e-22 78.5 0.0 9.3e-21 74.1 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|313126243|ref|YP_004036513.1| - 1.7e-17 63.9 0.0 4.7e-17 62.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313126243|ref|YP_004036513.1| - 8.8e-13 48.1 2.8 3e-12 46.4 0.2 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|313126243|ref|YP_004036513.1| - 2.2e-08 34.1 0.0 6.2e-08 32.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|313126243|ref|YP_004036513.1| - 1.7e-06 28.2 1.4 8.4e-06 26.0 0.1 2.7 3 0 0 3 3 3 1 PAS fold GAF PF01590.26 gi|313126243|ref|YP_004036513.1| - 3.6e-06 27.6 0.0 2e-05 25.2 0.0 2.3 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.7 gi|313126243|ref|YP_004036513.1| - 5.1e-05 23.5 0.0 0.00013 22.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|313126243|ref|YP_004036513.1| - 6.6e-05 23.1 0.0 0.00018 21.7 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|313126243|ref|YP_004036513.1| - 0.00012 22.4 0.0 0.00052 20.3 0.0 2.2 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|313126243|ref|YP_004036513.1| - 0.00046 20.1 0.3 0.0024 17.9 0.1 2.2 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|313126243|ref|YP_004036513.1| - 0.0034 17.6 0.0 0.021 15.1 0.0 2.4 2 1 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|313126243|ref|YP_004036513.1| - 0.0051 16.8 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|313126243|ref|YP_004036513.1| - 0.0075 16.1 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|313126243|ref|YP_004036513.1| - 0.0093 16.3 0.0 0.044 14.1 0.0 2.2 2 0 0 2 2 2 1 GAF domain SpoVT_C PF15714.5 gi|313126243|ref|YP_004036513.1| - 0.018 15.1 0.0 0.079 13.0 0.0 2.0 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor SPOB_a PF14689.6 gi|313126243|ref|YP_004036513.1| - 0.18 11.5 0.2 0.48 10.2 0.1 1.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain ABC2_membrane PF01061.24 gi|313126244|ref|YP_004036514.1| - 0.24 10.8 2.7 0.28 10.6 2.7 1.0 1 0 0 1 1 1 0 ABC-2 type transporter Polyketide_cyc PF03364.20 gi|313126245|ref|YP_004036515.1| - 6.4e-08 32.9 0.0 8e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|313126245|ref|YP_004036515.1| - 0.0002 21.6 0.1 0.00024 21.4 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport LnmK_N_HDF PF18238.1 gi|313126245|ref|YP_004036515.1| - 0.17 11.6 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 LnmK N-terminal Hot Dog Fold domain Glucodextran_N PF09137.11 gi|313126246|ref|YP_004036516.1| - 5.5e-80 268.7 0.7 1.7e-79 267.1 0.5 1.9 2 0 0 2 2 2 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.21 gi|313126246|ref|YP_004036516.1| - 6.6e-32 110.9 0.2 1.1e-22 80.5 0.0 4.3 2 2 0 3 3 3 3 Glycosyl hydrolases family 15 GHL5 PF14872.6 gi|313126247|ref|YP_004036517.1| - 1.8e-240 800.3 0.0 8e-239 794.8 0.0 2.0 1 1 0 1 1 1 1 Hypothetical glycoside hydrolase 5 zf-nanos PF05741.13 gi|313126248|ref|YP_004036518.1| - 0.00024 21.3 3.4 0.088 13.0 0.3 2.1 1 1 1 2 2 2 2 Nanos RNA binding domain zf-ribbon_3 PF13248.6 gi|313126248|ref|YP_004036518.1| - 0.00027 20.2 2.7 0.16 11.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.6 gi|313126248|ref|YP_004036518.1| - 0.00055 20.5 1.5 0.58 10.9 0.0 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YhfH PF14149.6 gi|313126248|ref|YP_004036518.1| - 0.0011 18.9 1.0 0.074 13.0 0.1 2.2 2 0 0 2 2 2 1 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|313126248|ref|YP_004036518.1| - 0.0014 18.7 3.1 0.0037 17.3 3.1 1.7 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|313126248|ref|YP_004036518.1| - 0.0033 17.4 0.8 0.0051 16.8 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|313126248|ref|YP_004036518.1| - 0.0035 17.3 5.7 0.052 13.5 5.0 2.1 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf_CopZ PF18423.1 gi|313126248|ref|YP_004036518.1| - 0.0059 16.5 3.4 0.042 13.8 0.2 2.2 1 1 1 2 2 2 1 Zinc binding domain Zn_ribbon_SprT PF17283.2 gi|313126248|ref|YP_004036518.1| - 0.0088 15.9 6.5 0.019 14.9 0.7 2.1 2 0 0 2 2 2 1 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|313126248|ref|YP_004036518.1| - 0.0089 15.7 5.0 0.49 10.2 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf_UBZ PF18439.1 gi|313126248|ref|YP_004036518.1| - 0.0095 15.5 3.0 0.86 9.3 0.3 2.5 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|313126248|ref|YP_004036518.1| - 0.012 15.7 2.6 1.3 9.1 0.1 2.2 1 1 1 2 2 2 0 CpXC protein zf-RING_7 PF02591.15 gi|313126248|ref|YP_004036518.1| - 0.012 15.7 3.6 0.37 11.0 0.1 2.6 3 0 0 3 3 2 0 C4-type zinc ribbon domain HypA PF01155.19 gi|313126248|ref|YP_004036518.1| - 0.013 15.5 0.3 0.016 15.2 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|313126248|ref|YP_004036518.1| - 0.019 14.9 1.2 2 8.4 0.2 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-DNL PF05180.12 gi|313126248|ref|YP_004036518.1| - 0.022 14.7 2.7 0.042 13.8 2.7 1.4 1 1 0 1 1 1 0 DNL zinc finger Lar_restr_allev PF14354.6 gi|313126248|ref|YP_004036518.1| - 0.025 14.9 2.7 0.078 13.4 2.7 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|313126248|ref|YP_004036518.1| - 0.033 13.9 0.6 0.83 9.4 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Di19 PF05605.12 gi|313126248|ref|YP_004036518.1| - 0.04 14.2 0.4 3.3 8.1 0.1 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Cys_rich_CPXG PF14255.6 gi|313126248|ref|YP_004036518.1| - 0.041 13.8 3.2 1.9 8.4 0.6 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.12 gi|313126248|ref|YP_004036518.1| - 0.046 13.2 6.5 0.49 10.0 6.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Ribosomal_L37ae PF01780.19 gi|313126248|ref|YP_004036518.1| - 0.05 13.7 0.7 0.069 13.2 0.7 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-tcix PF14952.6 gi|313126248|ref|YP_004036518.1| - 0.076 12.6 2.3 6.1 6.5 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|313126248|ref|YP_004036518.1| - 0.077 12.9 3.5 3.5 7.6 0.2 2.0 1 1 0 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|313126248|ref|YP_004036518.1| - 0.091 12.9 6.8 1.2 9.3 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|313126248|ref|YP_004036518.1| - 0.1 12.6 3.8 0.95 9.4 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|313126248|ref|YP_004036518.1| - 0.1 12.6 2.0 6.2 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|313126248|ref|YP_004036518.1| - 0.11 12.4 3.6 5.5 7.0 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger A2L_zn_ribbon PF08792.10 gi|313126248|ref|YP_004036518.1| - 0.13 12.0 3.0 1 9.2 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF35_N PF12172.8 gi|313126248|ref|YP_004036518.1| - 0.13 12.2 4.3 2 8.4 1.0 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TFIIS_C PF01096.18 gi|313126248|ref|YP_004036518.1| - 0.14 12.0 2.2 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.6 gi|313126248|ref|YP_004036518.1| - 0.14 11.5 3.3 0.13 11.6 1.9 1.7 2 0 0 2 2 2 0 Transcription factor zinc-finger Prok-RING_1 PF14446.6 gi|313126248|ref|YP_004036518.1| - 0.18 11.7 9.1 1.6 8.7 1.6 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C2H2 PF00096.26 gi|313126248|ref|YP_004036518.1| - 0.21 12.1 2.9 4.7 7.9 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_9 PF14369.6 gi|313126248|ref|YP_004036518.1| - 0.24 11.7 6.3 2.9 8.2 0.5 2.3 1 1 1 2 2 2 0 zinc-ribbon zinc_ribbon_5 PF13719.6 gi|313126248|ref|YP_004036518.1| - 0.26 11.1 1.6 14 5.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|313126248|ref|YP_004036518.1| - 0.26 11.4 4.4 1.5 8.9 4.4 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 NRDD PF13597.6 gi|313126248|ref|YP_004036518.1| - 0.27 9.9 1.1 0.35 9.6 1.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-C4_Topoisom PF01396.19 gi|313126248|ref|YP_004036518.1| - 0.29 11.0 3.1 2.2 8.1 0.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.16 gi|313126248|ref|YP_004036518.1| - 0.32 11.1 5.2 6 7.0 0.9 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1610 PF07754.11 gi|313126248|ref|YP_004036518.1| - 0.33 10.9 6.8 4.2 7.4 2.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|313126248|ref|YP_004036518.1| - 0.42 10.4 5.8 1.2 9.0 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Rubredoxin PF00301.20 gi|313126248|ref|YP_004036518.1| - 0.6 10.2 5.2 1.3 9.1 0.0 2.6 3 0 0 3 3 2 0 Rubredoxin zf-IS66 PF13005.7 gi|313126248|ref|YP_004036518.1| - 0.65 10.5 6.3 3.1 8.3 0.1 2.5 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_L32p PF01783.23 gi|313126248|ref|YP_004036518.1| - 0.86 9.9 3.5 17 5.8 0.3 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-ACC PF17848.1 gi|313126248|ref|YP_004036518.1| - 1.1 9.4 7.8 5.9 7.1 1.4 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF3797 PF12677.7 gi|313126248|ref|YP_004036518.1| - 2.1 8.3 4.8 5.9 6.9 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-RRN7 PF11781.8 gi|313126248|ref|YP_004036518.1| - 2.4 7.9 7.2 1.7 8.4 1.3 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PMT_2 PF13231.6 gi|313126250|ref|YP_004036520.1| - 2e-12 47.6 10.4 2e-12 47.6 10.4 3.0 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 gi|313126250|ref|YP_004036520.1| - 0.012 14.9 0.4 0.012 14.9 0.4 1.6 2 0 0 2 2 2 0 Alg9-like mannosyltransferase family ABC_tran PF00005.27 gi|313126252|ref|YP_004036522.1| - 4.1e-34 118.0 0.0 6.4e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|313126252|ref|YP_004036522.1| - 1.9e-07 31.1 0.3 1.9e-07 31.1 0.3 2.2 3 0 0 3 3 2 1 TOBE domain AAA_21 PF13304.6 gi|313126252|ref|YP_004036522.1| - 2.1e-06 27.8 0.5 0.015 15.1 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313126252|ref|YP_004036522.1| - 4.2e-05 24.0 0.1 7.8e-05 23.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|313126252|ref|YP_004036522.1| - 6.8e-05 22.9 0.0 0.00014 21.8 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|313126252|ref|YP_004036522.1| - 0.0023 18.4 0.0 0.015 15.7 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|313126252|ref|YP_004036522.1| - 0.0039 17.5 0.4 0.01 16.1 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313126252|ref|YP_004036522.1| - 0.0047 17.1 0.0 0.014 15.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313126252|ref|YP_004036522.1| - 0.0088 16.0 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|313126252|ref|YP_004036522.1| - 0.01 16.1 0.1 0.076 13.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|313126252|ref|YP_004036522.1| - 0.063 13.5 0.3 0.33 11.2 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|313126252|ref|YP_004036522.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313126252|ref|YP_004036522.1| - 0.17 11.9 0.5 0.49 10.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 gi|313126253|ref|YP_004036523.1| - 3.1e-24 85.7 36.4 1.4e-13 51.0 3.5 3.8 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF1952 PF09189.10 gi|313126253|ref|YP_004036523.1| - 0.035 14.0 0.0 0.082 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1952) SBP_bac_6 PF13343.6 gi|313126254|ref|YP_004036524.1| - 3.5e-16 59.4 0.0 4.4e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|313126254|ref|YP_004036524.1| - 5.7e-11 42.6 0.2 1e-10 41.7 0.2 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|313126254|ref|YP_004036524.1| - 1.1e-08 35.2 0.0 1.6e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313126254|ref|YP_004036524.1| - 0.0013 18.8 0.0 0.0041 17.1 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|313126254|ref|YP_004036524.1| - 0.004 16.5 0.8 0.011 15.1 0.8 1.8 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|313126254|ref|YP_004036524.1| - 0.037 13.9 1.3 0.037 13.9 1.3 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence RGP PF03214.13 gi|313126255|ref|YP_004036525.1| - 1.5e-15 57.2 0.0 1.8e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide HPP PF04982.13 gi|313126256|ref|YP_004036526.1| - 3.4e-14 53.1 10.3 3.4e-14 53.1 10.3 1.4 2 0 0 2 2 2 1 HPP family DUF1418 PF07214.12 gi|313126256|ref|YP_004036526.1| - 0.11 12.4 0.6 0.87 9.5 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) Peptidase_C5 PF00770.18 gi|313126256|ref|YP_004036526.1| - 0.13 12.0 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus endoprotease DEAD PF00270.29 gi|313126257|ref|YP_004036527.1| - 6.4e-23 81.4 0.0 9.4e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|313126257|ref|YP_004036527.1| - 9e-22 77.6 0.1 2.4e-21 76.3 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|313126257|ref|YP_004036527.1| - 1.4e-09 38.3 0.0 3.8e-09 36.9 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF393 PF04134.12 gi|313126258|ref|YP_004036528.1| - 4.2e-06 28.1 0.0 5.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DUF123 PF01986.16 gi|313126259|ref|YP_004036529.1| - 1.7e-29 102.1 0.0 2.2e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 MarR_2 PF12802.7 gi|313126260|ref|YP_004036530.1| - 1.2e-06 28.3 0.5 3.4e-06 26.8 0.5 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313126260|ref|YP_004036530.1| - 1.2e-05 25.1 0.1 2.9e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313126260|ref|YP_004036530.1| - 1.6e-05 24.7 0.0 3.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|313126260|ref|YP_004036530.1| - 3.2e-05 23.5 0.1 8.1e-05 22.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|313126260|ref|YP_004036530.1| - 7.5e-05 22.6 0.1 0.00018 21.4 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|313126260|ref|YP_004036530.1| - 0.00011 21.7 0.5 0.00049 19.6 0.1 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|313126260|ref|YP_004036530.1| - 0.00029 20.6 0.1 0.00075 19.2 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|313126260|ref|YP_004036530.1| - 0.00075 19.4 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|313126260|ref|YP_004036530.1| - 0.0011 18.8 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|313126260|ref|YP_004036530.1| - 0.0012 18.9 0.0 0.0032 17.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313126260|ref|YP_004036530.1| - 0.0013 19.2 0.1 0.0035 17.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|313126260|ref|YP_004036530.1| - 0.0015 18.4 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|313126260|ref|YP_004036530.1| - 0.0015 18.7 0.0 0.003 17.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|313126260|ref|YP_004036530.1| - 0.0036 17.0 0.1 0.013 15.2 0.0 1.9 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_23 PF13384.6 gi|313126260|ref|YP_004036530.1| - 0.008 16.0 0.3 0.008 16.0 0.3 2.6 3 0 0 3 3 3 1 Homeodomain-like domain DUF4423 PF14394.6 gi|313126260|ref|YP_004036530.1| - 0.01 15.6 0.0 0.022 14.4 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_DeoR PF08220.12 gi|313126260|ref|YP_004036530.1| - 0.011 15.5 0.1 0.023 14.5 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.6 gi|313126260|ref|YP_004036530.1| - 0.018 15.0 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_29 PF13551.6 gi|313126260|ref|YP_004036530.1| - 0.02 14.9 0.4 0.56 10.3 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Phage_CI_repr PF07022.13 gi|313126260|ref|YP_004036530.1| - 0.085 13.0 0.0 9.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain Rrf2 PF02082.20 gi|313126260|ref|YP_004036530.1| - 0.12 12.7 0.0 0.31 11.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Aminotran_1_2 PF00155.21 gi|313126261|ref|YP_004036531.1| - 6.4e-28 98.0 0.0 4.5e-27 95.2 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II YAcAr PF10686.9 gi|313126261|ref|YP_004036531.1| - 0.058 13.4 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family Deltaretro_Tax PF05599.11 gi|313126261|ref|YP_004036531.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Deltaretrovirus Tax protein FAD-oxidase_C PF02913.19 gi|313126262|ref|YP_004036532.1| - 1e-65 221.9 0.3 2.1e-65 220.8 0.1 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|313126262|ref|YP_004036532.1| - 1.9e-41 141.1 0.3 4.6e-41 139.8 0.3 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|313126262|ref|YP_004036532.1| - 8.9e-09 35.8 3.6 1.8e-08 34.8 3.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|313126262|ref|YP_004036532.1| - 4.3e-08 33.5 4.3 9.5e-08 32.4 4.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|313126262|ref|YP_004036532.1| - 6.3e-08 32.7 0.0 2.8e-05 24.2 0.1 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|313126262|ref|YP_004036532.1| - 3.8e-05 23.7 3.8 0.00075 19.6 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313126262|ref|YP_004036532.1| - 0.00028 21.0 1.7 0.014 15.6 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|313126262|ref|YP_004036532.1| - 0.0067 15.9 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.6 gi|313126262|ref|YP_004036532.1| - 0.041 14.0 0.3 0.041 14.0 0.3 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|313126262|ref|YP_004036532.1| - 0.052 13.7 0.2 0.19 12.0 0.1 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313126262|ref|YP_004036532.1| - 0.2 11.5 15.1 0.041 13.7 4.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313126262|ref|YP_004036532.1| - 0.24 12.4 1.5 0.97 10.4 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|313126262|ref|YP_004036532.1| - 0.26 11.9 8.3 2.8 8.6 8.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313126262|ref|YP_004036532.1| - 0.39 10.9 11.0 0.039 14.0 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|313126262|ref|YP_004036532.1| - 6.2 7.6 11.7 0.6 10.8 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.14 gi|313126263|ref|YP_004036533.1| - 1.3e-104 350.8 40.2 4.2e-104 349.1 40.2 1.6 1 1 0 1 1 1 1 L-lactate permease HTH_20 PF12840.7 gi|313126264|ref|YP_004036534.1| - 3.4e-05 23.8 0.1 6e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313126264|ref|YP_004036534.1| - 0.00021 21.2 0.0 0.00036 20.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|313126264|ref|YP_004036534.1| - 0.019 15.2 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|313126264|ref|YP_004036534.1| - 0.024 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|313126264|ref|YP_004036534.1| - 0.05 13.3 0.1 0.078 12.7 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|313126264|ref|YP_004036534.1| - 0.071 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain LUD_dom PF02589.15 gi|313126266|ref|YP_004036536.1| - 2.6e-11 43.6 0.0 3.4e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 LUD domain LUD_dom PF02589.15 gi|313126267|ref|YP_004036537.1| - 7e-44 149.8 0.1 1.1e-43 149.1 0.1 1.4 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|313126267|ref|YP_004036537.1| - 4.7e-08 33.4 3.6 1.1e-07 32.2 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313126267|ref|YP_004036537.1| - 9.6e-08 32.0 2.9 0.0005 20.1 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313126267|ref|YP_004036537.1| - 2.4e-06 27.6 5.1 5.7e-06 26.4 5.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|313126267|ref|YP_004036537.1| - 2.7e-06 27.8 2.5 5.8e-06 26.8 2.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|313126267|ref|YP_004036537.1| - 7.7e-06 26.4 4.7 2.2e-05 24.9 4.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313126267|ref|YP_004036537.1| - 0.00013 21.6 13.3 0.00017 21.2 3.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|313126267|ref|YP_004036537.1| - 0.00078 19.6 2.0 0.035 14.3 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|313126267|ref|YP_004036537.1| - 0.0011 19.0 10.6 0.0083 16.2 10.6 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313126267|ref|YP_004036537.1| - 0.0012 18.8 2.8 0.0012 18.8 2.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|313126267|ref|YP_004036537.1| - 0.0024 17.9 14.8 0.009 16.1 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313126267|ref|YP_004036537.1| - 0.011 16.7 5.4 0.1 13.6 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|313126267|ref|YP_004036537.1| - 0.033 13.9 3.6 0.045 13.5 0.2 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|313126267|ref|YP_004036537.1| - 0.038 14.9 5.0 0.038 14.9 5.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|313126267|ref|YP_004036537.1| - 0.05 14.4 6.9 0.078 13.8 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|313126267|ref|YP_004036537.1| - 0.073 13.6 13.9 0.037 14.5 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|313126267|ref|YP_004036537.1| - 1.7 9.5 5.7 0.45 11.3 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain PRC PF05239.16 gi|313126268|ref|YP_004036538.1| - 6.3e-13 48.6 0.3 7.9e-13 48.3 0.3 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|313126268|ref|YP_004036538.1| - 0.013 15.7 0.1 0.049 13.9 0.1 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) RcnB PF11776.8 gi|313126268|ref|YP_004036538.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator TrkA_N PF02254.18 gi|313126269|ref|YP_004036539.1| - 2e-22 79.6 1.8 4.7e-22 78.4 1.8 1.7 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|313126269|ref|YP_004036539.1| - 1.3e-13 51.1 0.4 8.2e-12 45.2 0.1 2.4 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|313126269|ref|YP_004036539.1| - 2.3e-09 37.8 1.5 3.1e-08 34.1 0.0 2.9 2 1 1 3 3 3 1 DHHA1 domain F420_oxidored PF03807.17 gi|313126269|ref|YP_004036539.1| - 3.3e-09 37.2 0.2 1.1e-08 35.5 0.2 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|313126269|ref|YP_004036539.1| - 3.7e-08 33.7 0.2 9.4e-08 32.4 0.2 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|313126269|ref|YP_004036539.1| - 1.1e-06 28.3 0.2 2.1e-06 27.4 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|313126269|ref|YP_004036539.1| - 1.2e-06 28.3 0.0 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 gi|313126269|ref|YP_004036539.1| - 5.8e-05 22.7 0.6 0.00027 20.5 0.1 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 gi|313126269|ref|YP_004036539.1| - 9.8e-05 22.4 0.1 0.00023 21.2 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|313126269|ref|YP_004036539.1| - 0.00011 22.4 0.0 0.00019 21.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|313126269|ref|YP_004036539.1| - 0.00015 21.4 0.1 0.00038 20.1 0.1 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|313126269|ref|YP_004036539.1| - 0.00027 21.4 1.9 0.00067 20.1 1.2 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|313126269|ref|YP_004036539.1| - 0.0011 18.4 0.6 0.0025 17.2 0.6 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|313126269|ref|YP_004036539.1| - 0.0015 17.9 0.0 0.0031 16.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|313126269|ref|YP_004036539.1| - 0.0016 18.4 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|313126269|ref|YP_004036539.1| - 0.0029 17.5 0.1 0.0073 16.2 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|313126269|ref|YP_004036539.1| - 0.0036 16.6 0.0 0.0058 15.9 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain adh_short PF00106.25 gi|313126269|ref|YP_004036539.1| - 0.012 15.0 0.6 0.032 13.7 0.2 2.0 2 1 0 2 2 2 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313126269|ref|YP_004036539.1| - 0.031 13.8 0.7 0.031 13.8 0.7 2.1 3 0 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase XdhC_C PF13478.6 gi|313126269|ref|YP_004036539.1| - 0.043 14.3 0.8 0.11 13.1 0.8 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain DUF364 PF04016.12 gi|313126269|ref|YP_004036539.1| - 0.044 13.4 0.1 0.089 12.4 0.1 1.4 1 0 0 1 1 1 0 Putative heavy-metal chelation UDPG_MGDP_dh_C PF03720.15 gi|313126269|ref|YP_004036539.1| - 0.045 14.2 1.3 0.16 12.4 0.7 2.2 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_8 PF13450.6 gi|313126269|ref|YP_004036539.1| - 0.05 13.8 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_3 PF03447.16 gi|313126269|ref|YP_004036539.1| - 0.31 11.7 2.3 1.2 9.8 2.3 2.1 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain AsnC_trans_reg PF01037.21 gi|313126271|ref|YP_004036541.1| - 1.4e-09 37.8 0.6 2.7e-09 36.9 0.6 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|313126271|ref|YP_004036541.1| - 6.8e-07 28.8 0.3 2.2e-06 27.1 0.3 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313126271|ref|YP_004036541.1| - 3.4e-05 23.8 0.3 9.8e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313126271|ref|YP_004036541.1| - 7.9e-05 22.4 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313126271|ref|YP_004036541.1| - 0.0003 20.6 0.0 0.00052 19.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|313126271|ref|YP_004036541.1| - 0.0061 16.4 0.1 0.017 15.0 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313126271|ref|YP_004036541.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF99 PF01949.16 gi|313126271|ref|YP_004036541.1| - 0.058 12.8 0.2 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF99 B-block_TFIIIC PF04182.12 gi|313126271|ref|YP_004036541.1| - 0.083 13.1 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC GYD PF08734.11 gi|313126271|ref|YP_004036541.1| - 0.12 12.3 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 GYD domain EamA PF00892.20 gi|313126272|ref|YP_004036542.1| - 4.8e-45 153.1 38.2 9.8e-25 87.3 13.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF3188 PF11384.8 gi|313126272|ref|YP_004036542.1| - 0.41 10.4 4.4 3.5 7.4 0.1 3.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) COX4 PF02936.14 gi|313126272|ref|YP_004036542.1| - 2 8.4 3.1 7.9 6.5 0.1 2.9 3 0 0 3 3 3 0 Cytochrome c oxidase subunit IV CAP59_mtransfer PF11735.8 gi|313126273|ref|YP_004036543.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 DUF2048 PF09752.9 gi|313126274|ref|YP_004036544.1| - 5.6e-09 35.6 0.0 1.8e-07 30.6 0.0 2.1 2 0 0 2 2 2 1 Abhydrolase domain containing 18 Hydrolase_4 PF12146.8 gi|313126274|ref|YP_004036544.1| - 0.036 13.3 0.0 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|313126274|ref|YP_004036544.1| - 0.055 13.1 0.0 0.25 11.0 0.0 2.1 1 1 0 1 1 1 0 alpha/beta hydrolase fold DLH PF01738.18 gi|313126274|ref|YP_004036544.1| - 0.12 11.9 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Dienelactone hydrolase family tRNA-synt_2b PF00587.25 gi|313126275|ref|YP_004036545.1| - 4.6e-34 117.9 0.0 8.7e-34 117.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|313126275|ref|YP_004036545.1| - 1.7e-18 66.6 0.4 8.8e-18 64.3 0.2 2.3 2 0 0 2 2 2 1 Anticodon binding domain TGS PF02824.21 gi|313126275|ref|YP_004036545.1| - 1.1e-12 47.8 0.3 2.3e-12 46.8 0.3 1.6 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|313126275|ref|YP_004036545.1| - 1.6e-11 44.1 0.0 3e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain ThiS PF02597.20 gi|313126275|ref|YP_004036545.1| - 0.0012 19.5 3.9 0.018 15.7 0.2 3.2 3 0 0 3 3 3 1 ThiS family Glyco_hydro_77 PF02446.17 gi|313126276|ref|YP_004036546.1| - 7.5e-150 499.8 0.5 9.3e-150 499.5 0.5 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase HTH_24 PF13412.6 gi|313126277|ref|YP_004036547.1| - 3.7e-13 48.8 0.6 5.6e-13 48.2 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313126277|ref|YP_004036547.1| - 5.6e-11 42.1 2.1 1.3e-10 41.0 2.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313126277|ref|YP_004036547.1| - 3.4e-07 30.1 0.0 5.6e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|313126277|ref|YP_004036547.1| - 6.7e-07 29.1 0.1 1.4e-05 24.9 0.1 2.2 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|313126277|ref|YP_004036547.1| - 8.3e-06 25.9 0.0 1.5e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|313126277|ref|YP_004036547.1| - 8e-05 22.6 0.1 0.00015 21.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|313126277|ref|YP_004036547.1| - 8.6e-05 22.2 0.3 0.00018 21.2 0.1 1.7 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|313126277|ref|YP_004036547.1| - 0.00028 20.8 0.0 0.00044 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|313126277|ref|YP_004036547.1| - 0.00029 20.4 0.2 0.0011 18.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|313126277|ref|YP_004036547.1| - 0.00042 20.1 0.0 0.00066 19.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AsnC_trans_reg PF01037.21 gi|313126277|ref|YP_004036547.1| - 0.0015 18.5 0.3 0.0045 16.9 0.0 1.8 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain Rrf2 PF02082.20 gi|313126277|ref|YP_004036547.1| - 0.0016 18.8 0.0 0.0026 18.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|313126277|ref|YP_004036547.1| - 0.0031 17.3 0.0 0.0063 16.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313126277|ref|YP_004036547.1| - 0.0035 17.3 0.2 0.012 15.6 0.1 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313126277|ref|YP_004036547.1| - 0.0039 16.8 0.1 0.0074 15.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|313126277|ref|YP_004036547.1| - 0.0044 16.8 0.1 0.0087 15.8 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 gi|313126277|ref|YP_004036547.1| - 0.0054 16.5 0.2 0.011 15.6 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_28 PF13518.6 gi|313126277|ref|YP_004036547.1| - 0.0065 16.6 0.1 0.013 15.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|313126277|ref|YP_004036547.1| - 0.0074 16.3 0.1 0.13 12.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix HrcA_DNA-bdg PF03444.15 gi|313126277|ref|YP_004036547.1| - 0.0075 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Put_DNA-bind_N PF06971.13 gi|313126277|ref|YP_004036547.1| - 0.0093 16.0 0.2 0.019 15.0 0.2 1.5 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_30 PF13556.6 gi|313126277|ref|YP_004036547.1| - 0.01 15.6 0.1 0.024 14.4 0.1 1.7 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_50 PF18024.1 gi|313126277|ref|YP_004036547.1| - 0.011 15.4 0.2 0.016 14.8 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|313126277|ref|YP_004036547.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_Tc3_2 PF01498.18 gi|313126277|ref|YP_004036547.1| - 0.018 15.2 0.3 0.039 14.2 0.1 1.6 2 0 0 2 2 1 0 Transposase Sigma70_r4 PF04545.16 gi|313126277|ref|YP_004036547.1| - 0.026 14.1 0.3 0.12 11.9 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|313126277|ref|YP_004036547.1| - 0.035 13.5 0.3 0.064 12.7 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PaaX PF07848.12 gi|313126277|ref|YP_004036547.1| - 0.047 13.9 0.0 0.099 12.9 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein DDRGK PF09756.9 gi|313126277|ref|YP_004036547.1| - 0.049 13.2 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_1 PF00126.27 gi|313126277|ref|YP_004036547.1| - 0.054 13.4 0.3 0.12 12.4 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_6 PF01418.17 gi|313126277|ref|YP_004036547.1| - 0.07 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family RPA_C PF08784.11 gi|313126277|ref|YP_004036547.1| - 0.091 13.4 0.1 0.59 10.8 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal HTH_38 PF13936.6 gi|313126277|ref|YP_004036547.1| - 0.15 11.8 1.3 0.19 11.5 0.5 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|313126277|ref|YP_004036547.1| - 0.15 11.9 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_terminase PF10668.9 gi|313126277|ref|YP_004036547.1| - 0.16 12.0 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit DUF21 PF01595.20 gi|313126278|ref|YP_004036548.1| - 4.1e-28 98.3 0.5 5.7e-28 97.8 0.5 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|313126278|ref|YP_004036548.1| - 1.4e-11 44.6 2.1 4.5e-07 30.2 0.0 2.4 2 0 0 2 2 2 2 CBS domain DJ-1_PfpI PF01965.24 gi|313126279|ref|YP_004036549.1| - 9.3e-24 84.1 0.0 1.1e-23 83.8 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|313126279|ref|YP_004036549.1| - 0.0056 16.4 0.0 0.016 14.9 0.0 1.6 1 1 0 1 1 1 1 ThiJ/PfpI family-like HhH-GPD PF00730.25 gi|313126280|ref|YP_004036550.1| - 5.8e-12 46.0 0.0 1e-11 45.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|313126280|ref|YP_004036550.1| - 1.1e-07 31.9 0.0 4.2e-07 30.1 0.0 1.8 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain DUF555 PF04475.12 gi|313126281|ref|YP_004036551.1| - 2.3e-37 127.4 0.5 2.3e-37 127.4 0.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF555) UPF0058 PF01893.16 gi|313126282|ref|YP_004036552.1| - 5.9e-20 71.3 0.2 6.5e-20 71.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 eIF-5_eIF-2B PF01873.17 gi|313126283|ref|YP_004036553.1| - 2.4e-37 127.4 0.0 2.8e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 OxoDH_E1alpha_N PF12573.8 gi|313126283|ref|YP_004036553.1| - 0.039 13.7 0.1 0.17 11.6 0.1 2.0 2 0 0 2 2 2 0 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal YyzF PF14116.6 gi|313126283|ref|YP_004036553.1| - 2.9 8.0 7.5 1.1 9.4 2.2 2.8 3 1 0 3 3 3 0 YyzF-like protein zinc_ribbon_4 PF13717.6 gi|313126284|ref|YP_004036554.1| - 0.00085 19.2 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313126284|ref|YP_004036554.1| - 0.0065 16.4 1.3 0.021 14.8 1.0 1.8 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|313126284|ref|YP_004036554.1| - 0.012 15.7 1.0 0.1 12.7 1.6 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|313126284|ref|YP_004036554.1| - 0.012 15.2 0.7 4.4 7.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2752 PF10825.8 gi|313126284|ref|YP_004036554.1| - 0.015 15.3 0.2 0.81 9.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) TF_Zn_Ribbon PF08271.12 gi|313126284|ref|YP_004036554.1| - 0.015 14.8 0.6 3.6 7.2 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|313126284|ref|YP_004036554.1| - 0.015 15.2 1.0 0.13 12.2 0.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Stc1 PF12898.7 gi|313126284|ref|YP_004036554.1| - 0.019 15.5 0.9 0.03 14.9 0.9 1.4 1 1 0 1 1 1 0 Stc1 domain HypA PF01155.19 gi|313126284|ref|YP_004036554.1| - 0.031 14.3 0.1 0.031 14.3 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|313126284|ref|YP_004036554.1| - 0.035 13.5 1.8 2.1 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|313126284|ref|YP_004036554.1| - 0.036 14.4 1.2 0.066 13.6 1.3 1.4 1 1 0 1 1 1 0 Probable Zinc-ribbon domain Nudix_N_2 PF14803.6 gi|313126284|ref|YP_004036554.1| - 0.042 13.8 0.9 3.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|313126284|ref|YP_004036554.1| - 0.042 13.8 0.6 0.068 13.1 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|313126284|ref|YP_004036554.1| - 0.055 13.3 0.3 1.6 8.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO CpXC PF14353.6 gi|313126284|ref|YP_004036554.1| - 0.055 13.5 0.9 5.2 7.1 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 gi|313126284|ref|YP_004036554.1| - 0.056 13.2 1.7 2.8 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|313126284|ref|YP_004036554.1| - 0.056 13.5 1.3 0.12 12.5 1.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.13 gi|313126284|ref|YP_004036554.1| - 0.057 13.5 0.9 0.16 12.0 0.1 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.6 gi|313126284|ref|YP_004036554.1| - 0.076 13.5 0.9 8.8 7.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain DUF2310 PF10071.9 gi|313126284|ref|YP_004036554.1| - 0.12 11.6 0.7 0.14 11.4 0.7 1.1 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) zf-RING_7 PF02591.15 gi|313126284|ref|YP_004036554.1| - 0.28 11.4 3.5 5.8 7.2 0.4 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|313126284|ref|YP_004036554.1| - 0.39 10.9 3.2 4.9 7.4 0.3 2.1 1 1 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.11 gi|313126284|ref|YP_004036554.1| - 0.41 10.7 0.2 0.41 10.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF983 PF06170.12 gi|313126284|ref|YP_004036554.1| - 0.5 10.8 1.5 12 6.3 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Rubredoxin_2 PF18073.1 gi|313126284|ref|YP_004036554.1| - 0.7 9.7 4.1 7.3 6.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIB PF00382.19 gi|313126285|ref|YP_004036555.1| - 1.4e-38 130.8 0.2 3.8e-18 65.3 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313126285|ref|YP_004036555.1| - 3.6e-17 61.6 1.9 7.9e-17 60.5 1.9 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|313126285|ref|YP_004036555.1| - 0.011 15.7 0.3 0.019 15.0 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4 PF04545.16 gi|313126285|ref|YP_004036555.1| - 0.011 15.2 2.5 0.042 13.4 0.1 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|313126285|ref|YP_004036555.1| - 0.024 14.6 0.5 0.049 13.6 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.19 gi|313126285|ref|YP_004036555.1| - 0.025 14.6 0.0 2.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-ribbon_3 PF13248.6 gi|313126285|ref|YP_004036555.1| - 0.057 12.9 3.2 0.23 10.9 3.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|313126285|ref|YP_004036555.1| - 0.069 13.0 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF1272 PF06906.11 gi|313126285|ref|YP_004036555.1| - 0.16 12.1 0.9 0.8 9.8 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.10 gi|313126285|ref|YP_004036555.1| - 0.4 10.4 1.2 0.93 9.3 1.2 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|313126285|ref|YP_004036555.1| - 1.7 8.9 4.9 1.7 8.8 0.9 2.3 1 1 2 3 3 3 0 Zinc ribbon domain Alpha-amylase PF00128.24 gi|313126286|ref|YP_004036556.1| - 0.041 13.5 0.6 0.94 9.0 0.1 2.0 1 1 1 2 2 2 0 Alpha amylase, catalytic domain HTH_33 PF13592.6 gi|313126288|ref|YP_004036558.1| - 0.039 13.6 0.3 0.069 12.8 0.3 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Nop PF01798.18 gi|313126289|ref|YP_004036559.1| - 4.8e-41 140.7 0.0 7.9e-41 140.0 0.0 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|313126290|ref|YP_004036560.1| - 1.4e-54 184.6 0.0 1.6e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Histidinol_dh PF00815.20 gi|313126290|ref|YP_004036560.1| - 0.12 11.4 0.1 0.15 11.0 0.1 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase TIR-like PF10137.9 gi|313126290|ref|YP_004036560.1| - 0.17 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain GCS2 PF04107.13 gi|313126291|ref|YP_004036561.1| - 1.1e-73 248.2 0.1 1.2e-73 248.0 0.1 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|313126291|ref|YP_004036561.1| - 0.0088 15.7 0.1 6.1 6.4 0.0 2.8 3 0 0 3 3 3 2 Putative amidoligase enzyme TrmB PF01978.19 gi|313126292|ref|YP_004036562.1| - 3.8e-06 26.7 0.0 5.9e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|313126292|ref|YP_004036562.1| - 5.7e-06 25.8 0.0 9.4e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|313126292|ref|YP_004036562.1| - 0.00021 21.1 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|313126292|ref|YP_004036562.1| - 0.00061 19.6 0.0 0.00094 19.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313126292|ref|YP_004036562.1| - 0.001 18.7 0.0 0.0019 17.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|313126292|ref|YP_004036562.1| - 0.0014 18.5 0.1 0.0045 16.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|313126292|ref|YP_004036562.1| - 0.0014 18.5 0.1 0.003 17.5 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|313126292|ref|YP_004036562.1| - 0.0015 18.3 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313126292|ref|YP_004036562.1| - 0.0017 18.4 0.1 0.0032 17.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3369 PF11849.8 gi|313126292|ref|YP_004036562.1| - 0.015 15.5 0.0 0.025 14.8 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3369) Replic_Relax PF13814.6 gi|313126292|ref|YP_004036562.1| - 0.016 15.3 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation MarR PF01047.22 gi|313126292|ref|YP_004036562.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|313126292|ref|YP_004036562.1| - 0.065 13.6 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.6 gi|313126292|ref|YP_004036562.1| - 0.079 12.8 1.2 0.25 11.2 0.0 2.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|313126292|ref|YP_004036562.1| - 0.12 12.7 0.0 0.87 9.9 0.0 2.1 2 0 0 2 2 2 0 Transposase CTP_transf_like PF01467.26 gi|313126293|ref|YP_004036563.1| - 7.7e-12 45.6 0.0 1e-11 45.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|313126293|ref|YP_004036563.1| - 0.0042 17.0 0.2 0.023 14.6 0.1 2.1 1 1 1 2 2 2 1 FAD synthetase TFIIB PF00382.19 gi|313126294|ref|YP_004036564.1| - 2.2e-05 24.4 0.5 4.3e-05 23.5 0.5 1.5 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|313126294|ref|YP_004036564.1| - 0.052 13.1 1.0 0.065 12.8 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 TaqI_C PF12950.7 gi|313126295|ref|YP_004036565.1| - 2e-16 60.2 0.0 3.9e-16 59.2 0.0 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain N6_Mtase PF02384.16 gi|313126295|ref|YP_004036565.1| - 2e-16 60.2 0.0 3.8e-09 36.3 0.0 2.3 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|313126295|ref|YP_004036565.1| - 4.4e-14 52.9 0.0 8.9e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase HSDR_N_2 PF13588.6 gi|313126295|ref|YP_004036565.1| - 5.2e-06 26.4 0.0 1.5e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|313126295|ref|YP_004036565.1| - 3.9e-05 23.4 0.0 0.0019 17.9 0.0 2.3 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N PF04313.14 gi|313126295|ref|YP_004036565.1| - 0.00016 21.7 0.0 0.00038 20.5 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Cons_hypoth95 PF03602.15 gi|313126295|ref|YP_004036565.1| - 0.018 14.7 0.0 1.2 8.7 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Cas_Cas4 PF01930.17 gi|313126295|ref|YP_004036565.1| - 0.022 14.9 0.0 0.18 11.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF83 Methyltransf_31 PF13847.6 gi|313126295|ref|YP_004036565.1| - 0.03 14.1 0.0 0.31 10.8 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Tox-REase-9 PF15650.6 gi|313126295|ref|YP_004036565.1| - 0.11 12.8 0.0 0.33 11.3 0.0 1.7 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 9 HSDR_N_2 PF13588.6 gi|313126296|ref|YP_004036566.1| - 3.4e-11 43.1 0.0 6.3e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.14 gi|313126296|ref|YP_004036566.1| - 1.2e-06 28.6 3.3 1.7e-05 24.9 0.0 3.3 3 2 2 5 5 5 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1978 PF09321.10 gi|313126296|ref|YP_004036566.1| - 0.06 12.6 5.4 0.095 12.0 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) TetR_C_29 PF17938.1 gi|313126296|ref|YP_004036566.1| - 0.096 12.8 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain FliT PF05400.13 gi|313126296|ref|YP_004036566.1| - 3.5 8.5 8.5 11 6.9 1.4 3.3 3 1 1 4 4 4 0 Flagellar protein FliT DisA_N PF02457.16 gi|313126297|ref|YP_004036567.1| - 1.3e-21 76.4 0.0 2.9e-21 75.2 0.0 1.6 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.18 gi|313126298|ref|YP_004036568.1| - 4.5e-15 55.8 1.4 4.5e-15 55.8 1.4 2.8 3 1 0 4 4 4 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|313126298|ref|YP_004036568.1| - 7.5e-08 32.2 3.2 1.2e-06 28.3 0.3 4.0 4 1 1 5 5 5 2 Conserved TM helix DUF443 PF04276.12 gi|313126298|ref|YP_004036568.1| - 1.3 8.7 9.3 0.14 11.9 4.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF443) TMEM100 PF16311.5 gi|313126298|ref|YP_004036568.1| - 8.9 5.9 5.7 29 4.3 1.1 2.5 2 0 0 2 2 2 0 Transmembrane protein 100 CPP1-like PF11833.8 gi|313126298|ref|YP_004036568.1| - 9.4 5.8 10.6 2.4 7.8 1.3 2.6 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like HATPase_c PF02518.26 gi|313126299|ref|YP_004036569.1| - 3.9e-13 49.9 0.0 9.8e-13 48.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|313126299|ref|YP_004036569.1| - 1.1e-08 35.3 0.0 3.9e-08 33.5 0.0 1.9 2 1 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|313126299|ref|YP_004036569.1| - 2.8e-05 24.3 0.1 8.5e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|313126299|ref|YP_004036569.1| - 0.00058 19.8 0.1 0.0011 18.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|313126299|ref|YP_004036569.1| - 0.0018 18.3 0.0 0.0066 16.4 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|313126299|ref|YP_004036569.1| - 0.0023 18.2 0.0 0.027 14.7 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|313126299|ref|YP_004036569.1| - 0.0025 17.7 0.0 0.0064 16.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|313126299|ref|YP_004036569.1| - 0.0043 17.0 1.1 0.0089 16.0 1.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|313126299|ref|YP_004036569.1| - 0.0062 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|313126299|ref|YP_004036569.1| - 0.019 14.6 0.9 0.042 13.6 0.9 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Pox_F11 PF04943.12 gi|313126299|ref|YP_004036569.1| - 0.021 13.9 0.5 0.026 13.6 0.5 1.1 1 0 0 1 1 1 0 Poxvirus F11 protein PAS PF00989.25 gi|313126299|ref|YP_004036569.1| - 0.023 14.7 0.1 0.088 12.8 0.0 2.0 2 1 0 2 2 2 0 PAS fold FA_desaturase_2 PF03405.14 gi|313126299|ref|YP_004036569.1| - 0.035 12.9 0.2 0.035 12.9 0.2 1.6 2 0 0 2 2 2 0 Fatty acid desaturase ECH_2 PF16113.5 gi|313126299|ref|YP_004036569.1| - 0.1 12.1 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Hexapep PF00132.24 gi|313126300|ref|YP_004036570.1| - 1.5e-10 40.4 6.9 5.9e-09 35.3 0.2 3.0 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313126300|ref|YP_004036570.1| - 3.4e-10 39.5 5.4 4.2e-09 36.0 0.1 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase GARS_A PF01071.19 gi|313126301|ref|YP_004036571.1| - 1.9e-54 184.4 0.2 2.7e-54 183.9 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|313126301|ref|YP_004036571.1| - 9.8e-22 77.6 0.2 2.2e-21 76.4 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|313126301|ref|YP_004036571.1| - 1e-14 54.6 0.1 6.1e-14 52.1 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|313126301|ref|YP_004036571.1| - 0.0003 20.9 0.0 0.00059 19.9 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|313126301|ref|YP_004036571.1| - 0.04 13.4 0.0 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|313126301|ref|YP_004036571.1| - 0.077 12.2 0.0 0.16 11.2 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|313126301|ref|YP_004036571.1| - 0.17 11.5 0.4 0.58 9.7 0.4 2.0 1 1 0 1 1 1 0 ATP-grasp domain Peptidase_S9 PF00326.21 gi|313126302|ref|YP_004036572.1| - 4.4e-62 209.3 0.0 7.8e-62 208.5 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|313126302|ref|YP_004036572.1| - 9e-59 199.3 0.0 1.1e-58 199.0 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|313126302|ref|YP_004036572.1| - 0.0012 18.2 0.1 0.0046 16.3 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 PQQ_2 PF13360.6 gi|313126303|ref|YP_004036573.1| - 2.7e-10 40.2 25.5 1.9e-06 27.6 8.5 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|313126303|ref|YP_004036573.1| - 7e-08 32.0 11.5 0.077 13.0 0.0 5.4 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|313126303|ref|YP_004036573.1| - 0.0011 19.3 28.9 4.2 8.0 0.3 9.0 6 4 1 7 7 7 3 PQQ-like domain PH_6 PF15406.6 gi|313126303|ref|YP_004036573.1| - 0.1 12.9 0.1 0.24 11.7 0.1 1.6 1 0 0 1 1 1 0 Pleckstrin homology domain Thioredox_DsbH PF03190.15 gi|313126304|ref|YP_004036574.1| - 5.2e-74 247.6 0.1 7.5e-74 247.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|313126304|ref|YP_004036574.1| - 9.2e-10 38.6 0.0 1.8e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|313126304|ref|YP_004036574.1| - 0.00066 19.0 0.0 0.44 9.7 0.0 2.3 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|313126304|ref|YP_004036574.1| - 0.038 13.1 0.0 0.22 10.5 0.0 2.0 2 0 0 2 2 2 0 Glycosyl Hydrolase Family 88 Thioredoxin PF00085.20 gi|313126306|ref|YP_004036576.1| - 5.7e-05 23.0 0.0 9.4e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|313126306|ref|YP_004036576.1| - 0.00042 20.2 0.0 0.00058 19.8 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family DUF2816 PF10992.8 gi|313126306|ref|YP_004036576.1| - 0.13 12.2 3.3 1.8 8.5 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2816) Peptidase_M15_4 PF13539.6 gi|313126306|ref|YP_004036576.1| - 0.14 12.6 0.1 0.28 11.7 0.1 1.5 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase Thioredoxin_8 PF13905.6 gi|313126306|ref|YP_004036576.1| - 0.16 12.3 0.1 3.3 8.1 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin-like PALP PF00291.25 gi|313126307|ref|YP_004036577.1| - 1.7e-61 208.2 0.4 2.2e-61 207.8 0.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|313126307|ref|YP_004036577.1| - 7.7e-05 22.7 0.0 0.00017 21.5 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Abhydrolase_1 PF00561.20 gi|313126308|ref|YP_004036578.1| - 4.4e-27 95.3 0.1 2.7e-20 73.1 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313126308|ref|YP_004036578.1| - 1.2e-24 88.2 5.4 1.4e-24 87.9 5.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313126308|ref|YP_004036578.1| - 1.9e-15 56.8 0.0 4.2e-15 55.7 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|313126308|ref|YP_004036578.1| - 0.003 17.5 0.1 1 9.2 0.1 2.5 2 1 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Ndr PF03096.14 gi|313126308|ref|YP_004036578.1| - 0.0032 16.2 0.0 0.015 14.0 0.0 1.8 2 0 0 2 2 2 1 Ndr family FSH1 PF03959.13 gi|313126308|ref|YP_004036578.1| - 0.0066 16.1 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Esterase PF00756.20 gi|313126308|ref|YP_004036578.1| - 0.012 15.3 0.1 0.02 14.5 0.1 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_2 PF02230.16 gi|313126308|ref|YP_004036578.1| - 0.017 15.0 0.0 2.5 7.8 0.0 2.9 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|313126308|ref|YP_004036578.1| - 0.019 14.7 0.0 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|313126308|ref|YP_004036578.1| - 0.16 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein OrfB_Zn_ribbon PF07282.11 gi|313126309|ref|YP_004036579.1| - 2.2e-22 78.7 2.0 1.1e-21 76.5 0.7 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313126309|ref|YP_004036579.1| - 0.00098 19.3 0.2 0.0026 18.0 0.0 1.8 2 0 0 2 2 2 1 Probable transposase C1_2 PF03107.16 gi|313126309|ref|YP_004036579.1| - 0.0028 17.9 0.8 0.0055 17.0 0.8 1.5 1 0 0 1 1 1 1 C1 domain Prok-RING_1 PF14446.6 gi|313126309|ref|YP_004036579.1| - 0.067 13.1 0.6 0.12 12.3 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|313126309|ref|YP_004036579.1| - 0.069 13.2 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PHD PF00628.29 gi|313126309|ref|YP_004036579.1| - 0.17 11.8 3.8 0.097 12.6 1.3 1.9 2 0 0 2 2 2 0 PHD-finger PikAIV_N PF18605.1 gi|313126309|ref|YP_004036579.1| - 0.87 9.2 2.7 0.91 9.2 0.8 2.0 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain zinc_ribbon_2 PF13240.6 gi|313126309|ref|YP_004036579.1| - 7.2 6.5 6.7 6.2 6.7 4.1 2.3 2 1 1 3 3 3 0 zinc-ribbon domain C6_DPF PF10170.9 gi|313126310|ref|YP_004036580.1| - 0.055 13.8 0.0 0.098 13.0 0.0 1.4 1 0 0 1 1 1 0 Cysteine-rich domain ThiI PF02568.14 gi|313126312|ref|YP_004036582.1| - 8.5e-44 149.5 0.0 1.3e-43 148.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|313126312|ref|YP_004036582.1| - 1.1e-16 61.2 0.0 2e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|313126312|ref|YP_004036582.1| - 0.0063 16.0 0.0 2.1 7.8 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|313126312|ref|YP_004036582.1| - 0.017 14.0 0.0 0.027 13.3 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|313126312|ref|YP_004036582.1| - 0.068 12.9 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 PP-loop family DAO PF01266.24 gi|313126313|ref|YP_004036583.1| - 5.9e-53 180.7 0.5 6.7e-53 180.5 0.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|313126313|ref|YP_004036583.1| - 0.0022 17.3 0.3 0.0038 16.5 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 gi|313126313|ref|YP_004036583.1| - 0.0042 16.4 0.0 0.015 14.6 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|313126313|ref|YP_004036583.1| - 0.0075 15.6 0.0 0.4 9.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|313126313|ref|YP_004036583.1| - 0.011 15.4 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|313126313|ref|YP_004036583.1| - 0.013 14.8 0.1 0.15 11.2 0.1 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313126313|ref|YP_004036583.1| - 0.029 13.1 0.0 3.3 6.3 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein 3HCDH_N PF02737.18 gi|313126313|ref|YP_004036583.1| - 0.037 13.9 0.2 0.062 13.2 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|313126313|ref|YP_004036583.1| - 0.12 12.7 1.9 0.15 12.3 0.0 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|313126313|ref|YP_004036583.1| - 0.17 11.2 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|313126313|ref|YP_004036583.1| - 0.21 10.8 0.1 0.54 9.5 0.0 1.6 2 0 0 2 2 2 0 Thi4 family PP_kinase_C_1 PF17941.1 gi|313126314|ref|YP_004036584.1| - 2.2e-71 238.8 0.1 5.8e-71 237.4 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|313126314|ref|YP_004036584.1| - 1.5e-65 219.9 0.8 3.8e-62 208.8 0.1 3.7 3 1 0 3 3 3 2 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|313126314|ref|YP_004036584.1| - 8.2e-64 214.9 3.4 1.3e-63 214.3 3.4 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|313126314|ref|YP_004036584.1| - 8.5e-36 122.5 0.1 3.9e-35 120.4 0.1 2.3 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|313126314|ref|YP_004036584.1| - 1.1e-10 41.5 0.0 4e-05 23.5 0.1 2.6 2 1 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 gi|313126314|ref|YP_004036584.1| - 0.024 14.2 0.3 0.052 13.1 0.3 1.5 1 0 0 1 1 1 0 Enolase C-terminal domain-like AdoMet_Synthase PF01941.19 gi|313126315|ref|YP_004036585.1| - 3.8e-176 585.7 4.8 4.3e-176 585.5 4.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) CYTH PF01928.21 gi|313126316|ref|YP_004036586.1| - 3.6e-42 144.3 2.3 4.1e-42 144.1 2.3 1.0 1 0 0 1 1 1 1 CYTH domain Peptidase_M6 PF05547.11 gi|313126316|ref|YP_004036586.1| - 0.0006 18.3 0.1 0.079 11.3 0.0 2.0 1 1 0 2 2 2 2 Immune inhibitor A peptidase M6 COX2 PF00116.20 gi|313126318|ref|YP_004036588.1| - 1.6e-19 69.9 1.0 6.8e-19 67.9 0.0 2.2 2 1 1 3 3 3 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|313126318|ref|YP_004036588.1| - 0.00025 21.1 0.0 0.00036 20.6 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain CopD PF05425.13 gi|313126318|ref|YP_004036588.1| - 0.088 13.2 2.3 0.16 12.4 2.3 1.5 1 1 0 1 1 1 0 Copper resistance protein D Sigma_reg_N PF13800.6 gi|313126318|ref|YP_004036588.1| - 0.09 13.1 3.4 2.2 8.7 0.0 3.1 3 1 0 3 3 3 0 Sigma factor regulator N-terminal COX1 PF00115.20 gi|313126319|ref|YP_004036589.1| - 8.9e-129 430.1 72.0 8.9e-129 430.1 72.0 2.9 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|313126319|ref|YP_004036589.1| - 7.4e-19 68.6 13.3 7.4e-19 68.6 13.3 2.9 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III COX4_pro PF03626.14 gi|313126320|ref|YP_004036590.1| - 6.6e-11 42.5 10.5 8.5e-11 42.1 10.5 1.2 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV 2TM PF13239.6 gi|313126320|ref|YP_004036590.1| - 0.32 11.3 4.2 0.33 11.3 3.5 1.4 1 1 0 1 1 1 0 2TM domain Acetyltransf_1 PF00583.25 gi|313126322|ref|YP_004036592.1| - 5.2e-14 52.5 0.0 7.3e-14 52.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|313126322|ref|YP_004036592.1| - 2.5e-10 40.6 0.0 3.9e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313126322|ref|YP_004036592.1| - 4.6e-10 39.5 0.0 1e-09 38.4 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313126322|ref|YP_004036592.1| - 4.3e-07 29.8 0.0 8.4e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|313126322|ref|YP_004036592.1| - 5.2e-05 23.3 0.0 0.00012 22.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|313126322|ref|YP_004036592.1| - 6e-05 23.7 0.0 8.3e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|313126322|ref|YP_004036592.1| - 0.0015 18.2 0.2 0.0031 17.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain MycE_N PF17843.1 gi|313126322|ref|YP_004036592.1| - 0.01 16.3 0.6 0.14 12.6 0.1 2.2 2 0 0 2 2 2 0 MycE methyltransferase N-terminal Acetyltransf_9 PF13527.7 gi|313126322|ref|YP_004036592.1| - 0.014 15.5 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FGase PF05013.12 gi|313126322|ref|YP_004036592.1| - 0.064 13.4 0.7 0.096 12.9 0.7 1.7 1 1 0 1 1 1 0 N-formylglutamate amidohydrolase GNAT_acetyltran PF12746.7 gi|313126322|ref|YP_004036592.1| - 0.2 11.2 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase DUF202 PF02656.15 gi|313126323|ref|YP_004036593.1| - 0.52 10.8 4.7 0.67 10.4 4.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) zf-Di19 PF05605.12 gi|313126324|ref|YP_004036594.1| - 0.0051 17.1 0.0 0.0085 16.4 0.0 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.9 gi|313126324|ref|YP_004036594.1| - 0.014 15.4 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger domain zinc_ribbon_9 PF14369.6 gi|313126324|ref|YP_004036594.1| - 0.023 14.9 0.3 0.041 14.2 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon zf-C2HC_2 PF13913.6 gi|313126324|ref|YP_004036594.1| - 0.036 14.0 0.4 0.056 13.4 0.4 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.26 gi|313126324|ref|YP_004036594.1| - 0.039 14.4 0.2 0.062 13.8 0.2 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|313126324|ref|YP_004036594.1| - 0.05 14.5 0.3 0.12 13.3 0.1 1.7 2 0 0 2 2 2 0 C2H2-type zinc finger DUF678 PF05077.12 gi|313126324|ref|YP_004036594.1| - 0.092 12.9 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF678) DUF2256 PF10013.9 gi|313126324|ref|YP_004036594.1| - 0.13 12.4 0.1 0.19 11.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-RING_7 PF02591.15 gi|313126324|ref|YP_004036594.1| - 0.15 12.2 0.2 0.28 11.4 0.2 1.4 1 0 0 1 1 1 0 C4-type zinc ribbon domain Rad50_zn_hook PF04423.14 gi|313126324|ref|YP_004036594.1| - 0.31 10.9 1.2 0.4 10.6 0.3 1.6 2 0 0 2 2 2 0 Rad50 zinc hook motif Sulf_coat_C PF12193.8 gi|313126325|ref|YP_004036595.1| - 0.014 15.4 0.0 0.94 9.6 0.0 2.9 3 0 0 3 3 3 0 Sulfolobus virus coat protein C terminal SpoVS PF04232.12 gi|313126325|ref|YP_004036595.1| - 0.16 11.7 0.4 0.71 9.6 0.1 2.2 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) FKBP_C PF00254.28 gi|313126327|ref|YP_004036597.1| - 1.1e-06 28.8 0.2 3.1e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ATPase PF06745.13 gi|313126329|ref|YP_004036599.1| - 1.2e-06 28.1 0.0 0.00061 19.2 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.11 gi|313126329|ref|YP_004036599.1| - 0.0081 15.3 0.1 0.015 14.4 0.1 1.4 1 0 0 1 1 1 1 PAXNEB protein Trigger_N PF05697.13 gi|313126329|ref|YP_004036599.1| - 0.066 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) CbiA PF01656.23 gi|313126330|ref|YP_004036600.1| - 6.2e-12 45.7 0.0 8.5e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|313126330|ref|YP_004036600.1| - 9.2e-11 41.7 1.0 8.4e-06 25.4 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|313126330|ref|YP_004036600.1| - 9.3e-05 22.3 2.6 0.017 14.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|313126330|ref|YP_004036600.1| - 0.00018 21.5 0.5 0.0049 16.8 0.5 2.1 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|313126330|ref|YP_004036600.1| - 0.0037 16.8 0.2 0.84 9.1 0.3 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|313126330|ref|YP_004036600.1| - 0.015 14.6 0.7 0.037 13.3 0.7 1.6 1 1 0 1 1 1 0 ATPase MipZ ArsA_ATPase PF02374.15 gi|313126330|ref|YP_004036600.1| - 0.29 10.3 0.9 0.44 9.7 0.9 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase Com_YlbF PF06133.11 gi|313126331|ref|YP_004036601.1| - 9.9e-27 93.6 11.1 1.2e-26 93.4 11.1 1.1 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA DUF3080 PF11279.8 gi|313126331|ref|YP_004036601.1| - 0.0015 17.8 2.0 0.0018 17.6 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3080) OmpH PF03938.14 gi|313126331|ref|YP_004036601.1| - 0.0049 17.2 11.9 0.0068 16.8 11.9 1.2 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Occludin_ELL PF07303.13 gi|313126331|ref|YP_004036601.1| - 0.007 17.1 4.2 0.031 15.0 3.9 1.8 1 1 1 2 2 2 1 Occludin homology domain Prominin PF05478.11 gi|313126331|ref|YP_004036601.1| - 0.059 11.3 1.0 0.27 9.1 0.4 1.8 1 1 1 2 2 2 0 Prominin Adeno_100 PF02438.16 gi|313126331|ref|YP_004036601.1| - 0.072 11.3 0.1 0.1 10.8 0.1 1.2 1 0 0 1 1 1 0 Late 100kD protein Nsp1_C PF05064.13 gi|313126331|ref|YP_004036601.1| - 0.12 12.2 7.3 0.21 11.4 7.3 1.5 1 1 0 1 1 1 0 Nsp1-like C-terminal region FUSC PF04632.12 gi|313126331|ref|YP_004036601.1| - 0.23 10.0 1.9 0.24 9.9 1.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family AAA_23 PF13476.6 gi|313126331|ref|YP_004036601.1| - 9.3 6.7 12.6 13 6.3 3.3 1.9 1 1 1 2 2 2 0 AAA domain OppC_N PF12911.7 gi|313126332|ref|YP_004036602.1| - 0.23 11.5 0.1 0.23 11.5 0.1 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Pneumo_att_G PF05539.11 gi|313126332|ref|YP_004036602.1| - 0.3 10.6 7.6 0.6 9.6 7.6 1.4 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G NAM-associated PF14303.6 gi|313126332|ref|YP_004036602.1| - 2.1 9.0 6.7 0.63 10.7 3.6 1.6 2 0 0 2 2 2 0 No apical meristem-associated C-terminal domain Y1_Tnp PF01797.16 gi|313126333|ref|YP_004036603.1| - 1.1e-30 106.2 0.1 1.4e-28 99.5 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like OrfB_IS605 PF01385.19 gi|313126334|ref|YP_004036604.1| - 5.2e-29 100.9 0.1 1.2e-28 99.8 0.1 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313126334|ref|YP_004036604.1| - 2.3e-17 62.6 0.8 4.7e-17 61.7 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|313126334|ref|YP_004036604.1| - 0.068 13.2 0.5 0.13 12.3 0.5 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Diphthamide_syn PF01866.17 gi|313126335|ref|YP_004036605.1| - 1.8e-77 260.8 0.0 2.2e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|313126335|ref|YP_004036605.1| - 0.0082 16.8 0.0 0.34 11.6 0.0 2.3 1 1 0 2 2 2 1 GTP-binding GTPase N-terminal Peptidase_S66 PF02016.15 gi|313126335|ref|YP_004036605.1| - 0.021 14.9 0.0 0.94 9.6 0.0 2.3 2 0 0 2 2 2 0 LD-carboxypeptidase N-terminal domain CCB1 PF12046.8 gi|313126335|ref|YP_004036605.1| - 0.13 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B DUF4224 PF13986.6 gi|313126335|ref|YP_004036605.1| - 0.16 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) LDcluster4 PF18306.1 gi|313126336|ref|YP_004036606.1| - 9.5e-36 122.8 6.4 1e-35 122.7 6.4 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|313126336|ref|YP_004036606.1| - 6e-05 23.2 0.1 0.00013 22.1 0.1 1.5 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|313126336|ref|YP_004036606.1| - 0.00019 20.7 5.5 0.00038 19.8 4.8 1.7 1 1 1 2 2 2 1 DNA recombination-mediator protein A Lactamase_B_2 PF12706.7 gi|313126337|ref|YP_004036607.1| - 1.7e-19 70.1 1.0 2.3e-19 69.7 1.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|313126337|ref|YP_004036607.1| - 1.3e-11 44.6 0.1 2e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313126337|ref|YP_004036607.1| - 0.39 10.7 11.4 1.4 8.9 11.4 1.9 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily DUF1664 PF07889.12 gi|313126338|ref|YP_004036608.1| - 1.1e-06 28.7 7.9 0.0083 16.2 0.6 3.5 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|313126338|ref|YP_004036608.1| - 1.4e-06 27.4 11.5 0.0061 15.5 0.5 2.4 1 1 0 2 2 2 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|313126338|ref|YP_004036608.1| - 8.7e-06 25.8 11.1 0.0037 17.3 0.7 3.1 1 1 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6_N PF17675.1 gi|313126338|ref|YP_004036608.1| - 2.3e-05 25.0 4.2 2.3e-05 25.0 4.2 3.4 3 1 1 4 4 2 1 Apg6 coiled-coil region DUF4201 PF13870.6 gi|313126338|ref|YP_004036608.1| - 7.1e-05 22.6 0.1 0.059 13.1 0.0 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) Filament PF00038.21 gi|313126338|ref|YP_004036608.1| - 0.00018 21.2 13.3 0.0088 15.7 2.6 3.3 1 1 2 3 3 3 2 Intermediate filament protein IFT57 PF10498.9 gi|313126338|ref|YP_004036608.1| - 0.00023 20.3 0.8 0.00023 20.3 0.8 3.3 3 1 1 4 4 4 1 Intra-flagellar transport protein 57 Seryl_tRNA_N PF02403.22 gi|313126338|ref|YP_004036608.1| - 0.00024 21.3 7.1 0.049 13.9 0.1 3.7 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.6 gi|313126338|ref|YP_004036608.1| - 0.00028 19.7 1.7 0.00028 19.7 1.7 1.5 1 1 1 2 2 2 1 AAA domain Baculo_PEP_C PF04513.12 gi|313126338|ref|YP_004036608.1| - 0.00029 20.9 7.6 0.13 12.4 0.8 3.4 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|313126338|ref|YP_004036608.1| - 0.00039 20.5 7.9 0.41 10.7 0.1 4.0 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Lebercilin PF15619.6 gi|313126338|ref|YP_004036608.1| - 0.00057 19.6 2.1 0.00096 18.9 0.3 2.1 2 0 0 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease Laminin_II PF06009.12 gi|313126338|ref|YP_004036608.1| - 0.00066 19.7 6.6 0.29 11.2 2.8 3.4 1 1 2 3 3 3 2 Laminin Domain II DUF724 PF05266.14 gi|313126338|ref|YP_004036608.1| - 0.00085 19.2 2.3 0.2 11.5 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF724) ZapB PF06005.12 gi|313126338|ref|YP_004036608.1| - 0.00092 19.6 6.7 0.61 10.6 0.0 4.1 3 1 1 4 4 4 1 Cell division protein ZapB ABC_tran_CTD PF16326.5 gi|313126338|ref|YP_004036608.1| - 0.0011 19.2 21.6 0.92 9.8 0.4 5.8 2 1 3 5 5 5 1 ABC transporter C-terminal domain DUF5082 PF16888.5 gi|313126338|ref|YP_004036608.1| - 0.0018 18.5 5.5 0.28 11.5 1.1 3.7 2 1 0 3 3 3 1 Domain of unknown function (DUF5082) Leu_zip PF15294.6 gi|313126338|ref|YP_004036608.1| - 0.0019 17.8 4.9 0.0027 17.3 2.4 2.2 1 1 1 2 2 2 2 Leucine zipper TPR_MLP1_2 PF07926.12 gi|313126338|ref|YP_004036608.1| - 0.0019 18.3 2.2 0.0019 18.3 2.2 3.3 2 1 1 3 3 2 1 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|313126338|ref|YP_004036608.1| - 0.002 18.4 11.6 0.33 11.3 0.9 3.8 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.6 gi|313126338|ref|YP_004036608.1| - 0.0023 17.3 2.5 0.072 12.4 1.0 2.4 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding HMMR_N PF15905.5 gi|313126338|ref|YP_004036608.1| - 0.0026 17.3 3.0 0.0026 17.3 3.0 2.1 1 1 1 2 2 2 1 Hyaluronan mediated motility receptor N-terminal Fib_alpha PF08702.10 gi|313126338|ref|YP_004036608.1| - 0.0039 17.4 0.8 0.036 14.3 0.1 2.5 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Tup_N PF08581.10 gi|313126338|ref|YP_004036608.1| - 0.0045 17.3 8.4 0.61 10.4 0.3 3.6 4 1 0 4 4 2 2 Tup N-terminal DUF1640 PF07798.11 gi|313126338|ref|YP_004036608.1| - 0.0051 16.9 4.4 0.13 12.3 3.2 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1640) EzrA PF06160.12 gi|313126338|ref|YP_004036608.1| - 0.0068 14.6 6.7 0.07 11.3 6.9 2.0 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Rab5-bind PF09311.11 gi|313126338|ref|YP_004036608.1| - 0.0069 15.8 11.7 0.11 11.8 3.1 2.9 1 1 2 3 3 3 1 Rabaptin-like protein XhlA PF10779.9 gi|313126338|ref|YP_004036608.1| - 0.0075 16.5 15.5 1 9.6 0.2 4.8 2 1 2 4 4 4 2 Haemolysin XhlA DUF4200 PF13863.6 gi|313126338|ref|YP_004036608.1| - 0.0075 16.7 2.4 0.84 10.0 1.0 3.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4200) Tropomyosin PF00261.20 gi|313126338|ref|YP_004036608.1| - 0.0087 15.5 16.2 0.02 14.3 16.2 1.6 1 0 0 1 1 1 1 Tropomyosin DUF713 PF05218.14 gi|313126338|ref|YP_004036608.1| - 0.0097 15.7 0.1 0.21 11.3 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF713) Prominin PF05478.11 gi|313126338|ref|YP_004036608.1| - 0.01 13.9 0.6 0.023 12.7 0.6 1.5 1 1 0 1 1 1 0 Prominin TMF_TATA_bd PF12325.8 gi|313126338|ref|YP_004036608.1| - 0.01 16.0 12.7 0.31 11.2 5.2 3.8 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding HAUS5 PF14817.6 gi|313126338|ref|YP_004036608.1| - 0.013 14.3 4.0 0.017 13.9 0.7 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 DLP_helical PF18709.1 gi|313126338|ref|YP_004036608.1| - 0.014 14.6 2.2 0.83 8.8 0.1 2.3 1 1 0 2 2 2 0 Dynamin-like helical domain NPV_P10 PF05531.12 gi|313126338|ref|YP_004036608.1| - 0.016 15.6 18.8 6.9 7.2 2.5 4.9 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.21 gi|313126338|ref|YP_004036608.1| - 0.021 15.3 11.7 0.81 10.2 0.2 3.5 1 1 1 3 3 3 0 Spectrin repeat CorA PF01544.18 gi|313126338|ref|YP_004036608.1| - 0.025 13.9 18.0 0.14 11.4 9.4 3.0 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein KASH_CCD PF14662.6 gi|313126338|ref|YP_004036608.1| - 0.055 13.3 6.8 0.027 14.3 3.2 2.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH HOOK PF05622.12 gi|313126338|ref|YP_004036608.1| - 0.069 11.3 12.5 0.34 9.0 12.6 1.8 1 1 0 1 1 1 0 HOOK protein FliJ PF02050.16 gi|313126338|ref|YP_004036608.1| - 0.07 13.4 0.8 22 5.3 0.1 2.9 1 1 1 3 3 2 0 Flagellar FliJ protein Fez1 PF06818.15 gi|313126338|ref|YP_004036608.1| - 0.075 13.5 7.8 0.61 10.5 4.9 2.8 2 1 1 3 3 2 0 Fez1 Tektin PF03148.14 gi|313126338|ref|YP_004036608.1| - 0.081 11.7 6.7 0.58 8.8 3.9 3.1 1 1 1 2 2 2 0 Tektin family YabA PF06156.13 gi|313126338|ref|YP_004036608.1| - 0.082 13.6 0.9 4.5 8.0 0.4 3.1 1 1 1 2 2 2 0 Initiation control protein YabA TMF_DNA_bd PF12329.8 gi|313126338|ref|YP_004036608.1| - 0.082 12.9 6.6 13 5.8 0.0 4.1 1 1 3 4 4 4 0 TATA element modulatory factor 1 DNA binding zf-C4H2 PF10146.9 gi|313126338|ref|YP_004036608.1| - 0.085 13.2 8.5 0.77 10.0 2.2 2.8 1 1 1 2 2 2 0 Zinc finger-containing protein Atg14 PF10186.9 gi|313126338|ref|YP_004036608.1| - 0.087 11.9 0.1 0.34 10.0 0.1 1.8 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Bacillus_HBL PF05791.11 gi|313126338|ref|YP_004036608.1| - 0.087 12.7 5.8 2.1 8.1 0.5 2.9 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) MAD PF05557.13 gi|313126338|ref|YP_004036608.1| - 0.093 11.1 6.2 0.17 10.2 2.4 2.0 1 1 0 2 2 2 0 Mitotic checkpoint protein Golgin_A5 PF09787.9 gi|313126338|ref|YP_004036608.1| - 0.11 12.0 8.9 0.59 9.6 6.1 2.2 1 1 1 2 2 2 0 Golgin subfamily A member 5 ApoLp-III PF07464.11 gi|313126338|ref|YP_004036608.1| - 0.11 12.6 3.6 0.86 9.7 1.3 2.9 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) FH2 PF02181.23 gi|313126338|ref|YP_004036608.1| - 0.15 11.2 3.0 0.77 8.8 0.9 2.4 1 1 2 3 3 3 0 Formin Homology 2 Domain PI3K_P85_iSH2 PF16454.5 gi|313126338|ref|YP_004036608.1| - 0.16 11.6 0.1 0.99 9.0 0.0 2.3 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Fzo_mitofusin PF04799.13 gi|313126338|ref|YP_004036608.1| - 0.2 11.2 4.4 2.7 7.5 0.1 3.1 1 1 3 4 4 4 0 fzo-like conserved region TBCC_N PF16752.5 gi|313126338|ref|YP_004036608.1| - 0.21 12.1 4.1 1.2 9.7 0.5 3.3 1 1 1 2 2 2 0 Tubulin-specific chaperone C N-terminal domain GCN5L1 PF06320.13 gi|313126338|ref|YP_004036608.1| - 0.24 11.6 4.8 5.4 7.2 0.1 2.9 2 1 1 3 3 2 0 GCN5-like protein 1 (GCN5L1) RmuC PF02646.16 gi|313126338|ref|YP_004036608.1| - 0.27 10.4 2.8 3 6.9 0.8 2.6 1 1 3 4 4 4 0 RmuC family ADIP PF11559.8 gi|313126338|ref|YP_004036608.1| - 0.27 11.3 4.0 2.8 8.0 0.1 3.2 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding Prefoldin PF02996.17 gi|313126338|ref|YP_004036608.1| - 0.28 11.1 9.5 32 4.5 0.1 4.8 2 1 4 6 6 6 0 Prefoldin subunit FlaC_arch PF05377.11 gi|313126338|ref|YP_004036608.1| - 0.29 11.5 10.5 33 5.0 0.7 4.9 1 1 3 4 4 3 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.7 gi|313126338|ref|YP_004036608.1| - 0.3 11.2 22.4 0.049 13.8 3.8 2.7 1 1 1 2 2 2 0 Tropomyosin like RPW8 PF05659.11 gi|313126338|ref|YP_004036608.1| - 0.31 10.7 1.7 3.8 7.2 0.1 2.8 3 0 0 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Nup88 PF10168.9 gi|313126338|ref|YP_004036608.1| - 0.32 8.8 0.8 0.45 8.3 0.8 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF16 PF01519.16 gi|313126338|ref|YP_004036608.1| - 0.34 11.4 7.0 12 6.5 1.4 3.2 2 1 1 3 3 3 0 Protein of unknown function DUF16 Nsp1_C PF05064.13 gi|313126338|ref|YP_004036608.1| - 0.35 10.7 7.5 2.1 8.2 1.6 2.4 1 1 1 2 2 2 0 Nsp1-like C-terminal region CLZ PF16526.5 gi|313126338|ref|YP_004036608.1| - 0.35 11.3 15.8 0.62 10.5 0.5 5.1 2 1 3 5 5 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Prefoldin_2 PF01920.20 gi|313126338|ref|YP_004036608.1| - 0.36 10.8 12.3 2.9 7.9 0.4 4.5 2 1 1 3 3 3 0 Prefoldin subunit DUF3450 PF11932.8 gi|313126338|ref|YP_004036608.1| - 0.38 10.0 13.1 1.4 8.1 1.2 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) THOC7 PF05615.13 gi|313126338|ref|YP_004036608.1| - 0.4 11.0 8.6 1.2 9.4 4.8 3.2 1 1 1 2 2 2 0 Tho complex subunit 7 SHE3 PF17078.5 gi|313126338|ref|YP_004036608.1| - 0.4 10.4 3.7 3 7.5 0.1 2.2 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 SKA2 PF16740.5 gi|313126338|ref|YP_004036608.1| - 0.43 10.4 3.3 13 5.6 0.2 3.4 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 2 DUF4795 PF16043.5 gi|313126338|ref|YP_004036608.1| - 0.43 10.2 18.5 0.03 13.9 10.4 2.7 2 1 0 2 2 1 0 Domain of unknown function (DUF4795) JIP_LZII PF16471.5 gi|313126338|ref|YP_004036608.1| - 0.71 10.1 6.4 19 5.5 0.0 4.0 3 1 1 4 4 4 0 JNK-interacting protein leucine zipper II DUF4618 PF15397.6 gi|313126338|ref|YP_004036608.1| - 0.9 8.9 5.1 1.3e+02 1.8 0.1 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) GrpE PF01025.19 gi|313126338|ref|YP_004036608.1| - 0.9 9.2 5.8 1.3 8.7 4.0 2.2 1 1 1 2 2 1 0 GrpE Sec34 PF04136.15 gi|313126338|ref|YP_004036608.1| - 1 9.2 4.8 39 4.1 0.0 3.0 1 1 0 3 3 3 0 Sec34-like family Vps53_N PF04100.12 gi|313126338|ref|YP_004036608.1| - 1.8 7.4 5.9 0.95 8.4 3.0 1.9 1 1 1 2 2 2 0 Vps53-like, N-terminal Csm1_N PF18504.1 gi|313126338|ref|YP_004036608.1| - 1.9 8.9 11.6 13 6.2 2.4 4.5 2 1 3 5 5 5 0 Csm1 N-terminal domain Cluap1 PF10234.9 gi|313126338|ref|YP_004036608.1| - 2.4 7.5 7.3 6.7 6.0 5.1 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 PRKG1_interact PF15898.5 gi|313126338|ref|YP_004036608.1| - 2.9 8.8 5.3 22 6.0 1.1 3.3 2 1 1 3 3 2 0 cGMP-dependent protein kinase interacting domain ATG16 PF08614.11 gi|313126338|ref|YP_004036608.1| - 3.2 7.9 21.3 5.3 7.2 7.0 3.3 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Rootletin PF15035.6 gi|313126338|ref|YP_004036608.1| - 3.3 7.7 8.5 6.7 6.7 5.3 2.8 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion HIP1_clath_bdg PF16515.5 gi|313126338|ref|YP_004036608.1| - 4.3 8.0 9.4 18 6.0 0.1 3.6 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Jnk-SapK_ap_N PF09744.9 gi|313126338|ref|YP_004036608.1| - 6.4 7.0 11.4 1.6 8.9 5.4 2.4 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 DUF2353 PF09789.9 gi|313126338|ref|YP_004036608.1| - 6.7 6.0 10.8 5.4 6.3 7.4 2.1 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) HisG PF01634.18 gi|313126339|ref|YP_004036609.1| - 0.054 13.5 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase tRNA-synt_1b PF00579.25 gi|313126341|ref|YP_004036611.1| - 1.7e-25 90.0 0.0 1e-24 87.4 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF1707 PF08044.11 gi|313126341|ref|YP_004036611.1| - 0.13 12.4 5.1 0.54 10.4 0.4 3.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Peripla_BP_2 PF01497.18 gi|313126343|ref|YP_004036613.1| - 2.4e-19 69.8 0.1 3.8e-19 69.2 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein CopD PF05425.13 gi|313126344|ref|YP_004036614.1| - 7.4e-05 23.1 13.7 7.4e-05 23.1 13.7 1.7 2 0 0 2 2 2 1 Copper resistance protein D OppC_N PF12911.7 gi|313126344|ref|YP_004036614.1| - 0.37 10.8 4.3 1.4 8.9 4.3 2.2 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C HTH_20 PF12840.7 gi|313126345|ref|YP_004036615.1| - 6.6e-09 35.7 0.1 9.4e-09 35.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313126345|ref|YP_004036615.1| - 0.00011 22.0 0.2 0.00016 21.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|313126345|ref|YP_004036615.1| - 0.00012 22.0 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|313126345|ref|YP_004036615.1| - 0.00094 19.0 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313126345|ref|YP_004036615.1| - 0.0035 17.1 0.0 0.0054 16.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|313126345|ref|YP_004036615.1| - 0.0062 16.4 0.0 0.0082 16.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|313126345|ref|YP_004036615.1| - 0.0075 16.2 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain FUR PF01475.19 gi|313126345|ref|YP_004036615.1| - 0.075 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.14 gi|313126345|ref|YP_004036615.1| - 0.076 13.0 0.0 0.15 12.0 0.0 1.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF742 PF05331.11 gi|313126345|ref|YP_004036615.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Jagunal PF07086.12 gi|313126346|ref|YP_004036616.1| - 0.076 13.1 1.6 0.073 13.1 0.9 1.5 1 1 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis TspO_MBR PF03073.15 gi|313126346|ref|YP_004036616.1| - 0.34 11.0 7.4 0.42 10.7 7.4 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF1218 PF06749.12 gi|313126346|ref|YP_004036616.1| - 0.34 11.5 5.2 0.18 12.3 3.2 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1218) Phlebovirus_G2 PF07245.11 gi|313126346|ref|YP_004036616.1| - 0.46 8.9 2.7 0.43 9.0 2.7 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G2 YtpI PF14007.6 gi|313126346|ref|YP_004036616.1| - 3.8 7.7 13.7 2.4 8.4 1.3 2.3 1 1 1 2 2 2 0 YtpI-like protein MMPL PF03176.15 gi|313126347|ref|YP_004036617.1| - 1.7e-31 109.4 39.6 2.1e-17 63.0 13.9 3.1 3 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|313126347|ref|YP_004036617.1| - 3.2e-11 43.3 6.4 5.7e-07 29.5 0.3 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|313126347|ref|YP_004036617.1| - 4.4e-09 35.0 12.2 1.1e-07 30.4 3.2 2.1 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|313126347|ref|YP_004036617.1| - 0.021 14.2 18.4 0.042 13.2 8.4 2.6 2 0 0 2 2 2 0 Protein export membrane protein Pilin_N PF07790.11 gi|313126347|ref|YP_004036617.1| - 0.16 12.9 0.2 0.16 12.9 0.2 4.8 5 0 0 5 5 5 0 Archaeal Type IV pilin, N-terminal HPIH PF13323.6 gi|313126347|ref|YP_004036617.1| - 0.26 11.2 0.6 0.65 9.8 0.0 1.8 2 0 0 2 2 2 0 N-terminal domain with HPIH motif Phage_integrase PF00589.22 gi|313126348|ref|YP_004036618.1| - 9.3e-17 61.3 0.0 1.9e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|313126348|ref|YP_004036618.1| - 4e-08 33.6 3.8 9.9e-07 29.1 0.9 2.2 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|313126348|ref|YP_004036618.1| - 7.2e-08 32.6 0.6 3.4e-07 30.4 0.5 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|313126348|ref|YP_004036618.1| - 0.021 14.7 0.0 0.33 10.9 0.0 2.2 2 0 0 2 2 2 0 Archaeal phage integrase RHH_1 PF01402.21 gi|313126349|ref|YP_004036619.1| - 0.042 13.8 1.2 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family SRAP PF02586.14 gi|313126350|ref|YP_004036620.1| - 1.5e-67 227.3 0.0 1.7e-67 227.2 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) RNase_H_2 PF13482.6 gi|313126351|ref|YP_004036621.1| - 1.1e-37 129.6 0.0 1.4e-37 129.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|313126351|ref|YP_004036621.1| - 0.0023 17.6 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 3'-5' exonuclease DUF520 PF04461.13 gi|313126352|ref|YP_004036622.1| - 0.16 12.1 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF520) Glycos_transf_2 PF00535.26 gi|313126353|ref|YP_004036623.1| - 8.6e-17 61.5 0.0 1.1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313126353|ref|YP_004036623.1| - 2.4e-06 27.6 0.2 3e-06 27.3 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF3179 PF11376.8 gi|313126354|ref|YP_004036624.1| - 2.5e-101 338.8 0.0 2.9e-101 338.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Nudix_N_2 PF14803.6 gi|313126354|ref|YP_004036624.1| - 0.066 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Nudix N-terminal DNA_ligase_ZBD PF03119.16 gi|313126354|ref|YP_004036624.1| - 0.19 11.7 0.2 0.4 10.7 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Bactofilin PF04519.13 gi|313126356|ref|YP_004036626.1| - 8e-14 51.7 9.1 3.3e-10 40.1 0.4 3.2 2 1 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|313126356|ref|YP_004036626.1| - 0.002 17.8 17.5 0.19 11.5 0.2 5.9 4 2 3 7 7 7 3 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.8 gi|313126356|ref|YP_004036626.1| - 0.035 13.7 0.4 0.48 10.0 0.6 2.4 2 1 2 4 4 4 0 Protein of unknown function (DUF3494) Hexapep_2 PF14602.6 gi|313126356|ref|YP_004036626.1| - 0.045 13.5 0.1 0.045 13.5 0.1 4.2 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF3672 PF12421.8 gi|313126356|ref|YP_004036626.1| - 0.5 10.3 2.8 20 5.1 0.0 2.9 2 1 1 3 3 3 0 Fibronectin type III protein Phage_spike PF18715.1 gi|313126356|ref|YP_004036626.1| - 4.9 7.3 5.4 6.5 6.9 1.1 3.1 3 1 0 3 3 3 0 Phage spike trimer DUF4349 PF14257.6 gi|313126357|ref|YP_004036627.1| - 1.8e-62 210.5 4.1 2.7e-62 210.0 4.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) CENP-F_leu_zip PF10473.9 gi|313126357|ref|YP_004036627.1| - 0.00013 22.0 7.1 0.0023 18.0 7.4 2.2 2 1 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|313126357|ref|YP_004036627.1| - 0.0012 17.8 1.7 0.0015 17.5 1.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein Filament PF00038.21 gi|313126357|ref|YP_004036627.1| - 0.0013 18.4 0.9 0.076 12.6 0.0 2.1 1 1 1 2 2 2 1 Intermediate filament protein ABC_tran_CTD PF16326.5 gi|313126357|ref|YP_004036627.1| - 0.0015 18.7 5.0 0.0058 16.9 0.3 2.4 2 0 0 2 2 2 1 ABC transporter C-terminal domain EzrA PF06160.12 gi|313126357|ref|YP_004036627.1| - 0.0028 15.9 0.4 0.0038 15.5 0.4 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA MAD PF05557.13 gi|313126357|ref|YP_004036627.1| - 0.0033 15.9 3.2 0.0045 15.4 3.2 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein DUF2408 PF10303.9 gi|313126357|ref|YP_004036627.1| - 0.0038 17.8 1.0 0.019 15.5 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2408) Macoilin PF09726.9 gi|313126357|ref|YP_004036627.1| - 0.0069 15.0 1.0 0.0091 14.6 1.0 1.0 1 0 0 1 1 1 1 Macoilin family Seryl_tRNA_N PF02403.22 gi|313126357|ref|YP_004036627.1| - 0.016 15.4 2.5 0.049 13.9 2.7 1.6 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain PI3K_P85_iSH2 PF16454.5 gi|313126357|ref|YP_004036627.1| - 0.019 14.5 0.5 0.027 14.1 0.5 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2353 PF09789.9 gi|313126357|ref|YP_004036627.1| - 0.022 14.1 1.6 0.03 13.7 1.6 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) PilJ PF13675.6 gi|313126357|ref|YP_004036627.1| - 0.028 14.5 1.2 0.069 13.2 1.2 1.7 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spc24 PF08286.11 gi|313126357|ref|YP_004036627.1| - 0.035 14.3 4.4 1.8 8.8 0.4 2.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 COG2 PF06148.11 gi|313126357|ref|YP_004036627.1| - 0.049 13.7 2.8 0.094 12.8 2.8 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 IFT20 PF14931.6 gi|313126357|ref|YP_004036627.1| - 0.071 13.3 3.8 3.2 7.9 0.2 2.2 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 DUF4017 PF13209.6 gi|313126357|ref|YP_004036627.1| - 0.072 13.0 0.3 0.072 13.0 0.3 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF4017) Snapin_Pallidin PF14712.6 gi|313126357|ref|YP_004036627.1| - 0.077 13.4 4.4 0.17 12.3 4.4 1.5 1 0 0 1 1 1 0 Snapin/Pallidin FapA PF03961.13 gi|313126357|ref|YP_004036627.1| - 0.078 11.6 0.3 0.1 11.2 0.3 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF3450 PF11932.8 gi|313126357|ref|YP_004036627.1| - 0.097 12.0 9.2 2.1 7.6 6.8 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4201 PF13870.6 gi|313126357|ref|YP_004036627.1| - 0.1 12.4 3.7 1.1 8.9 4.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) DUF2730 PF10805.8 gi|313126357|ref|YP_004036627.1| - 0.15 12.2 3.3 2.4 8.3 3.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) DUF3573 PF12097.8 gi|313126357|ref|YP_004036627.1| - 0.17 10.6 2.6 0.18 10.6 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3573) SKA2 PF16740.5 gi|313126357|ref|YP_004036627.1| - 0.22 11.3 3.0 1.1 9.0 0.5 2.2 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DivIC PF04977.15 gi|313126357|ref|YP_004036627.1| - 0.25 11.1 8.8 1.4 8.8 1.5 2.5 1 1 1 2 2 2 0 Septum formation initiator LPAM_1 PF08139.12 gi|313126357|ref|YP_004036627.1| - 0.28 11.7 1.9 0.9 10.2 1.9 1.9 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site GAS PF13851.6 gi|313126357|ref|YP_004036627.1| - 0.28 10.5 4.3 0.43 9.9 4.3 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding FTA4 PF13093.6 gi|313126357|ref|YP_004036627.1| - 0.3 11.0 3.6 0.5 10.2 3.1 1.6 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 APG6_N PF17675.1 gi|313126357|ref|YP_004036627.1| - 0.36 11.4 7.8 1.5 9.4 7.9 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region AAA_23 PF13476.6 gi|313126357|ref|YP_004036627.1| - 0.4 11.2 3.7 0.57 10.7 3.7 1.2 1 1 0 1 1 1 0 AAA domain Prefoldin_2 PF01920.20 gi|313126357|ref|YP_004036627.1| - 0.44 10.5 5.9 7.7 6.5 0.8 2.6 1 1 0 2 2 2 0 Prefoldin subunit HalX PF08663.10 gi|313126357|ref|YP_004036627.1| - 0.45 10.9 9.2 15 6.0 1.1 3.3 1 1 2 3 3 3 0 HalX domain DUF1664 PF07889.12 gi|313126357|ref|YP_004036627.1| - 0.52 10.4 3.8 0.43 10.6 1.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|313126357|ref|YP_004036627.1| - 0.57 10.7 5.7 3.8 8.1 3.3 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein SPX PF03105.19 gi|313126357|ref|YP_004036627.1| - 0.72 9.7 5.8 7.9 6.3 0.4 2.0 2 0 0 2 2 2 0 SPX domain CorA PF01544.18 gi|313126357|ref|YP_004036627.1| - 1 8.6 3.9 1.8 7.8 3.9 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Laminin_II PF06009.12 gi|313126357|ref|YP_004036627.1| - 1.2 9.1 6.0 2 8.4 4.5 2.0 1 1 1 2 2 2 0 Laminin Domain II bZIP_2 PF07716.15 gi|313126357|ref|YP_004036627.1| - 1.3 9.2 5.4 14 5.9 1.1 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Osmo_CC PF08946.10 gi|313126357|ref|YP_004036627.1| - 1.6 9.0 6.1 1.5 9.1 1.0 2.3 2 0 0 2 2 2 0 Osmosensory transporter coiled coil DUF4140 PF13600.6 gi|313126357|ref|YP_004036627.1| - 2.8 8.4 13.2 2.6 8.5 1.9 2.9 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) TolA_bind_tri PF16331.5 gi|313126357|ref|YP_004036627.1| - 2.8 8.1 9.7 48 4.1 9.4 2.2 1 1 1 2 2 2 0 TolA binding protein trimerisation Cnn_1N PF07989.11 gi|313126357|ref|YP_004036627.1| - 5.6 7.2 8.2 1.7 8.8 1.2 2.5 2 1 1 3 3 2 0 Centrosomin N-terminal motif 1 MMR_HSR1_C PF08438.10 gi|313126358|ref|YP_004036628.1| - 5.7e-32 110.6 0.0 8.9e-32 110.0 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|313126358|ref|YP_004036628.1| - 9.4e-21 74.0 0.0 7.5e-20 71.1 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|313126358|ref|YP_004036628.1| - 2.3e-11 43.6 0.0 1.6e-10 40.8 0.0 2.2 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|313126358|ref|YP_004036628.1| - 3.8e-08 33.0 0.0 2.4e-07 30.4 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B NOG1 PF06858.14 gi|313126358|ref|YP_004036628.1| - 0.13 12.0 0.0 0.94 9.3 0.0 2.2 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) Aminotran_1_2 PF00155.21 gi|313126360|ref|YP_004036630.1| - 8.4e-64 216.0 0.0 9.4e-64 215.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|313126360|ref|YP_004036630.1| - 1.1e-13 51.2 0.1 1.7e-13 50.6 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|313126360|ref|YP_004036630.1| - 6.2e-08 32.3 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|313126360|ref|YP_004036630.1| - 4.4e-07 28.8 0.0 6.2e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|313126360|ref|YP_004036630.1| - 8.1e-07 28.3 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|313126360|ref|YP_004036630.1| - 0.011 14.5 0.0 0.019 13.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III ResIII PF04851.15 gi|313126362|ref|YP_004036632.1| - 1.1e-22 80.9 0.0 2.8e-22 79.5 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit XPB_DRD PF18458.1 gi|313126362|ref|YP_004036632.1| - 1e-17 63.7 2.1 3.9e-17 61.9 2.1 2.1 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain ERCC3_RAD25_C PF16203.5 gi|313126362|ref|YP_004036632.1| - 2.5e-17 62.9 0.0 3.3e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|313126362|ref|YP_004036632.1| - 9.1e-14 51.8 0.0 1.8e-12 47.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|313126362|ref|YP_004036632.1| - 3.1e-08 33.6 0.1 2e-07 30.9 0.0 2.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|313126362|ref|YP_004036632.1| - 0.0022 18.2 0.0 1.3 9.2 0.0 2.8 3 0 0 3 3 3 2 Helicase C-terminal domain SNF2_N PF00176.23 gi|313126362|ref|YP_004036632.1| - 0.0031 16.3 0.1 0.016 13.9 0.1 2.2 1 1 0 2 2 2 1 SNF2 family N-terminal domain SecA_DEAD PF07517.14 gi|313126362|ref|YP_004036632.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain CARDB PF07705.11 gi|313126363|ref|YP_004036633.1| - 0.043 14.1 0.3 0.057 13.7 0.3 1.1 1 0 0 1 1 1 0 CARDB DUF790 PF05626.11 gi|313126364|ref|YP_004036634.1| - 8.8e-138 459.2 0.0 4e-137 457.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF790) GvpL_GvpF PF06386.11 gi|313126364|ref|YP_004036634.1| - 0.0099 15.8 0.7 0.033 14.1 0.0 2.2 3 0 0 3 3 3 1 Gas vesicle synthesis protein GvpL/GvpF DUF433 PF04255.14 gi|313126364|ref|YP_004036634.1| - 0.073 12.9 2.4 5.8 6.9 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF433) DUF2267 PF10025.9 gi|313126364|ref|YP_004036634.1| - 0.23 11.8 9.5 0.061 13.6 1.7 2.9 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2267) Methyltranf_PUA PF13636.6 gi|313126365|ref|YP_004036635.1| - 6.9e-09 35.6 0.0 1.2e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|313126366|ref|YP_004036636.1| - 3.1e-52 177.1 0.0 5.8e-52 176.3 0.0 1.4 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|313126366|ref|YP_004036636.1| - 1.3e-05 25.6 0.0 3.2e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|313126366|ref|YP_004036636.1| - 0.00037 20.3 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|313126366|ref|YP_004036636.1| - 0.053 13.6 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase PAC2 PF09754.9 gi|313126367|ref|YP_004036637.1| - 1.1e-38 133.3 0.1 1.3e-38 133.1 0.1 1.0 1 0 0 1 1 1 1 PAC2 family kleA_kleC PF17383.2 gi|313126367|ref|YP_004036637.1| - 0.033 14.5 0.4 0.08 13.3 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A Sigma70_r1_2 PF00140.20 gi|313126367|ref|YP_004036637.1| - 0.18 11.9 1.0 1.6 8.8 1.0 2.4 1 1 0 1 1 1 0 Sigma-70 factor, region 1.2 GrpE PF01025.19 gi|313126368|ref|YP_004036638.1| - 2e-39 134.9 6.7 2e-39 134.9 6.7 2.0 1 1 1 2 2 2 1 GrpE MAD PF05557.13 gi|313126368|ref|YP_004036638.1| - 9.8e-05 20.9 12.3 0.00011 20.7 12.3 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein ATG16 PF08614.11 gi|313126368|ref|YP_004036638.1| - 0.0072 16.6 19.3 0.011 16.0 19.3 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Exonuc_VII_L PF02601.15 gi|313126368|ref|YP_004036638.1| - 0.011 15.3 4.7 0.012 15.2 4.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|313126368|ref|YP_004036638.1| - 0.015 15.5 2.3 0.027 14.7 2.3 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CHASE6_C PF17150.4 gi|313126368|ref|YP_004036638.1| - 0.028 15.1 3.0 1.6 9.5 2.7 2.6 1 1 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain Cep57_MT_bd PF06657.13 gi|313126368|ref|YP_004036638.1| - 0.041 14.3 2.3 0.1 13.1 0.6 2.2 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 TMPIT PF07851.13 gi|313126368|ref|YP_004036638.1| - 0.059 12.6 1.3 0.095 11.9 1.3 1.3 1 0 0 1 1 1 0 TMPIT-like protein Het-C PF07217.11 gi|313126368|ref|YP_004036638.1| - 0.082 11.4 2.6 0.11 11.0 2.6 1.1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C Fzo_mitofusin PF04799.13 gi|313126368|ref|YP_004036638.1| - 0.15 11.6 2.0 0.25 10.9 2.0 1.4 1 0 0 1 1 1 0 fzo-like conserved region Occludin_ELL PF07303.13 gi|313126368|ref|YP_004036638.1| - 0.16 12.7 3.5 0.35 11.6 3.5 1.6 1 0 0 1 1 1 0 Occludin homology domain DUF1664 PF07889.12 gi|313126368|ref|YP_004036638.1| - 0.21 11.6 1.8 0.45 10.6 1.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) MIIP PF15734.5 gi|313126368|ref|YP_004036638.1| - 0.21 11.0 7.6 0.28 10.6 7.6 1.2 1 0 0 1 1 1 0 Migration and invasion-inhibitory FAM76 PF16046.5 gi|313126368|ref|YP_004036638.1| - 0.31 10.4 7.6 0.39 10.0 7.6 1.1 1 0 0 1 1 1 0 FAM76 protein PSI_PsaF PF02507.15 gi|313126368|ref|YP_004036638.1| - 0.34 10.7 1.4 0.55 10.0 1.4 1.3 1 0 0 1 1 1 0 Photosystem I reaction centre subunit III GAT PF03127.14 gi|313126368|ref|YP_004036638.1| - 0.69 10.3 4.4 2.8 8.3 1.1 2.6 1 1 1 2 2 2 0 GAT domain Lebercilin PF15619.6 gi|313126368|ref|YP_004036638.1| - 1.3 8.6 15.6 0.65 9.6 9.2 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease UPF0242 PF06785.11 gi|313126368|ref|YP_004036638.1| - 1.4 9.0 13.5 2.4 8.2 13.5 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|313126368|ref|YP_004036638.1| - 2.3 7.2 6.8 3.2 6.8 6.8 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 IFP_35_N PF07334.13 gi|313126368|ref|YP_004036638.1| - 2.5 8.3 8.4 3.3 7.8 0.5 2.4 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus SlyX PF04102.12 gi|313126368|ref|YP_004036638.1| - 3.8 8.2 11.3 0.24 12.0 5.2 2.2 2 0 0 2 2 2 0 SlyX Macoilin PF09726.9 gi|313126368|ref|YP_004036638.1| - 4.5 5.7 10.3 5.4 5.5 10.3 1.1 1 0 0 1 1 1 0 Macoilin family CorA PF01544.18 gi|313126368|ref|YP_004036638.1| - 5.3 6.3 6.2 7.1 5.9 5.8 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Tho2 PF11262.8 gi|313126368|ref|YP_004036638.1| - 6.9 5.8 6.9 10 5.2 6.9 1.4 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Golgin_A5 PF09787.9 gi|313126368|ref|YP_004036638.1| - 9.3 5.6 14.7 13 5.1 14.7 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Abhydrolase_6 PF12697.7 gi|313126369|ref|YP_004036639.1| - 2.6e-07 31.5 2.4 3.3e-07 31.1 2.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family HSP70 PF00012.20 gi|313126370|ref|YP_004036640.1| - 6.6e-242 804.0 17.7 6.7e-240 797.4 17.7 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|313126370|ref|YP_004036640.1| - 2.9e-20 72.4 0.2 2.9e-20 72.4 0.2 2.1 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|313126370|ref|YP_004036640.1| - 0.01 15.1 0.1 0.053 12.8 0.0 2.1 3 0 0 3 3 3 0 StbA protein FGGY_C PF02782.16 gi|313126370|ref|YP_004036640.1| - 0.046 13.4 0.0 0.14 11.9 0.0 1.9 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain PhyH PF05721.13 gi|313126370|ref|YP_004036640.1| - 0.18 12.0 4.4 0.32 11.2 1.7 2.2 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) DnaJ_C PF01556.18 gi|313126371|ref|YP_004036641.1| - 1.4e-43 148.5 0.0 1.9e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|313126371|ref|YP_004036641.1| - 6.7e-26 90.2 4.8 1.2e-25 89.3 4.8 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|313126371|ref|YP_004036641.1| - 7.5e-13 48.6 18.5 1.9e-12 47.4 18.5 1.7 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|313126371|ref|YP_004036641.1| - 3.2e-05 23.8 11.4 0.03 14.3 2.6 2.7 2 0 0 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein TackOD1 PF18551.1 gi|313126371|ref|YP_004036641.1| - 0.014 15.1 6.6 0.074 12.7 0.5 2.5 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 LTXXQ PF07813.12 gi|313126371|ref|YP_004036641.1| - 0.017 15.8 0.7 5.2 7.8 0.0 2.5 2 0 0 2 2 2 0 LTXXQ motif family protein RPT PF13446.6 gi|313126371|ref|YP_004036641.1| - 0.088 12.7 0.1 0.19 11.7 0.1 1.6 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF5351 PF17302.2 gi|313126371|ref|YP_004036641.1| - 0.15 12.3 21.0 3.9 7.8 1.0 4.5 4 0 0 4 4 4 0 Family of unknown function (DUF5351) zf-CHY PF05495.12 gi|313126371|ref|YP_004036641.1| - 0.18 12.3 5.2 0.39 11.2 5.2 1.6 1 0 0 1 1 1 0 CHY zinc finger zf-RING_10 PF16685.5 gi|313126371|ref|YP_004036641.1| - 0.29 11.3 3.9 0.54 10.4 3.3 1.8 1 1 0 1 1 1 0 zinc RING finger of MSL2 DZR PF12773.7 gi|313126371|ref|YP_004036641.1| - 2.7 8.1 15.9 4.9 7.2 3.9 2.1 1 1 1 2 2 2 0 Double zinc ribbon Peptidase_M48 PF01435.18 gi|313126372|ref|YP_004036642.1| - 1.5e-27 96.7 0.6 1.8e-27 96.4 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M48 SprT-like PF10263.9 gi|313126372|ref|YP_004036642.1| - 2.1e-05 24.3 0.0 3.1e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_M56 PF05569.11 gi|313126372|ref|YP_004036642.1| - 3.4e-05 23.2 0.1 8e-05 22.0 0.0 1.7 1 1 1 2 2 2 1 BlaR1 peptidase M56 BSP PF04450.12 gi|313126372|ref|YP_004036642.1| - 0.00061 19.6 0.0 0.00082 19.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase of plants and bacteria Cupin_2 PF07883.11 gi|313126373|ref|YP_004036643.1| - 6.6e-10 38.6 0.7 7.7e-10 38.4 0.7 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 gi|313126373|ref|YP_004036643.1| - 9.7e-06 25.4 0.1 1.2e-05 25.1 0.1 1.0 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.12 gi|313126373|ref|YP_004036643.1| - 1.9e-05 24.2 0.1 2.5e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|313126373|ref|YP_004036643.1| - 0.026 14.4 0.0 0.03 14.2 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Multi_ubiq PF14452.6 gi|313126373|ref|YP_004036643.1| - 0.055 13.7 0.2 0.083 13.1 0.2 1.4 1 0 0 1 1 1 0 Multiubiquitin CDC48_2 PF02933.17 gi|313126373|ref|YP_004036643.1| - 0.06 13.1 0.3 1.3 8.8 0.3 2.3 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 Ectoine_synth PF06339.12 gi|313126373|ref|YP_004036643.1| - 0.084 13.1 0.0 0.086 13.0 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase cobW PF02492.19 gi|313126374|ref|YP_004036644.1| - 1.5e-51 174.4 0.0 2e-51 174.1 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|313126374|ref|YP_004036644.1| - 9.7e-26 89.5 0.0 1.6e-25 88.8 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain MeaB PF03308.16 gi|313126374|ref|YP_004036644.1| - 0.00086 18.4 0.1 1.8 7.4 0.0 3.1 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|313126374|ref|YP_004036644.1| - 0.0014 17.8 0.1 0.0021 17.2 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|313126374|ref|YP_004036644.1| - 0.0022 17.9 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase TsaE PF02367.17 gi|313126374|ref|YP_004036644.1| - 0.0065 16.5 0.1 0.018 15.1 0.0 1.7 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE GTP_EFTU PF00009.27 gi|313126374|ref|YP_004036644.1| - 0.0066 16.0 0.0 2.7 7.5 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|313126374|ref|YP_004036644.1| - 0.011 16.1 0.0 0.026 14.9 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain dNK PF01712.19 gi|313126374|ref|YP_004036644.1| - 0.016 15.0 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_33 PF13671.6 gi|313126374|ref|YP_004036644.1| - 0.045 13.9 0.0 0.088 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|313126374|ref|YP_004036644.1| - 0.051 13.5 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|313126374|ref|YP_004036644.1| - 0.081 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.14 gi|313126374|ref|YP_004036644.1| - 0.097 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|313126374|ref|YP_004036644.1| - 0.099 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|313126374|ref|YP_004036644.1| - 0.13 12.6 0.1 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313126374|ref|YP_004036644.1| - 0.17 11.6 0.1 0.39 10.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|313126374|ref|YP_004036644.1| - 0.17 11.9 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1059 PF06348.11 gi|313126376|ref|YP_004036646.1| - 0.029 14.6 0.4 0.031 14.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) ADH_N PF08240.12 gi|313126377|ref|YP_004036647.1| - 8.7e-28 96.4 0.5 1.7e-27 95.4 0.5 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_assoc PF13823.6 gi|313126377|ref|YP_004036647.1| - 1.1e-10 41.3 0.8 2.5e-10 40.1 0.8 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N PF00107.26 gi|313126377|ref|YP_004036647.1| - 9.2e-09 35.4 0.2 3.3e-08 33.6 0.2 1.9 1 1 1 2 2 2 1 Zinc-binding dehydrogenase HI0933_like PF03486.14 gi|313126377|ref|YP_004036647.1| - 0.012 14.3 0.1 0.09 11.5 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein Glu_dehyd_C PF16912.5 gi|313126377|ref|YP_004036647.1| - 0.018 14.5 0.2 0.047 13.2 0.0 1.7 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|313126377|ref|YP_004036647.1| - 0.02 14.2 0.1 0.033 13.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|313126377|ref|YP_004036647.1| - 0.098 11.9 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313126377|ref|YP_004036647.1| - 0.14 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|313126377|ref|YP_004036647.1| - 0.19 11.1 0.4 0.3 10.4 0.4 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase AMP-binding PF00501.28 gi|313126378|ref|YP_004036648.1| - 3.5e-08 32.5 0.1 3.9e-07 29.0 0.0 2.3 1 1 1 3 3 3 1 AMP-binding enzyme ABC_tran PF00005.27 gi|313126379|ref|YP_004036649.1| - 2.5e-35 122.0 0.0 4.3e-35 121.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|313126379|ref|YP_004036649.1| - 3.8e-11 43.0 0.3 1.1e-10 41.5 0.3 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|313126379|ref|YP_004036649.1| - 9.3e-05 22.4 0.0 0.5 10.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313126379|ref|YP_004036649.1| - 0.0023 17.4 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313126379|ref|YP_004036649.1| - 0.0048 17.2 0.1 0.048 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|313126379|ref|YP_004036649.1| - 0.0071 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|313126379|ref|YP_004036649.1| - 0.016 15.6 0.9 0.16 12.4 0.9 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313126379|ref|YP_004036649.1| - 0.02 15.2 0.1 0.073 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|313126379|ref|YP_004036649.1| - 0.063 13.8 0.0 0.15 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313126379|ref|YP_004036649.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SBP_bac_8 PF13416.6 gi|313126380|ref|YP_004036650.1| - 1.3e-22 80.9 9.9 1.9e-22 80.4 9.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|313126380|ref|YP_004036650.1| - 4.5e-16 59.0 1.2 5.6e-16 58.7 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|313126380|ref|YP_004036650.1| - 0.01 15.1 1.1 0.02 14.2 1.1 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IreB PF06135.12 gi|313126380|ref|YP_004036650.1| - 0.016 15.4 0.0 0.036 14.3 0.0 1.5 1 0 0 1 1 1 0 IreB regulatory phosphoprotein K_channel_TID PF07941.11 gi|313126380|ref|YP_004036650.1| - 3 8.4 6.5 5.9 7.4 6.5 1.4 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain BPD_transp_1 PF00528.22 gi|313126381|ref|YP_004036651.1| - 5.2e-14 52.4 21.0 5.2e-14 52.4 21.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313126382|ref|YP_004036652.1| - 2.1e-16 60.2 13.7 2.1e-16 60.2 13.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AMP-binding PF00501.28 gi|313126383|ref|YP_004036653.1| - 7.8e-73 245.5 0.0 1e-72 245.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313126383|ref|YP_004036653.1| - 3.9e-22 79.0 0.5 7.8e-22 78.0 0.5 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|313126383|ref|YP_004036653.1| - 8.6e-10 38.4 0.1 8.6e-10 38.4 0.1 3.6 4 0 0 4 4 4 1 Acetyl-coenzyme A synthetase N-terminus SCFA_trans PF02667.14 gi|313126384|ref|YP_004036654.1| - 2.1e-127 425.8 23.1 2.5e-127 425.6 23.1 1.1 1 0 0 1 1 1 1 Short chain fatty acid transporter ABG_transport PF03806.13 gi|313126384|ref|YP_004036654.1| - 8.3e-06 24.3 5.2 8.3e-06 24.3 5.2 2.2 3 0 0 3 3 3 1 AbgT putative transporter family DcuC PF03606.15 gi|313126384|ref|YP_004036654.1| - 0.0018 16.8 7.0 0.0018 16.8 7.0 2.3 2 1 1 3 3 3 1 C4-dicarboxylate anaerobic carrier Acetyltransf_1 PF00583.25 gi|313126385|ref|YP_004036655.1| - 3.2e-07 30.6 0.0 5.9e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|313126385|ref|YP_004036655.1| - 0.00034 21.3 0.2 0.00092 19.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313126385|ref|YP_004036655.1| - 0.00078 19.4 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313126385|ref|YP_004036655.1| - 0.0018 18.7 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4282 PF14110.6 gi|313126387|ref|YP_004036657.1| - 5.1 7.9 7.3 4.1e+02 1.8 8.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) dCMP_cyt_deam_1 PF00383.23 gi|313126388|ref|YP_004036658.1| - 2.1e-16 59.7 0.3 2.5e-16 59.4 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|313126388|ref|YP_004036658.1| - 3.1e-11 43.6 0.1 4.8e-11 43.0 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region PNP_UDP_1 PF01048.20 gi|313126389|ref|YP_004036659.1| - 1.8e-45 155.1 1.9 2.1e-45 154.8 1.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.14 gi|313126390|ref|YP_004036660.1| - 3.6e-39 134.8 0.2 4.6e-39 134.4 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313126390|ref|YP_004036660.1| - 2e-08 34.6 0.2 7.2e-07 29.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313126390|ref|YP_004036660.1| - 0.047 12.9 0.0 0.075 12.3 0.0 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|313126390|ref|YP_004036660.1| - 0.068 12.4 0.3 9.7 5.4 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2080 PF09853.9 gi|313126391|ref|YP_004036661.1| - 1.8e-06 27.6 0.0 2.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) HrcA_DNA-bdg PF03444.15 gi|313126392|ref|YP_004036662.1| - 1.1e-38 130.7 0.1 1.5e-38 130.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|313126392|ref|YP_004036662.1| - 2e-09 37.7 0.0 3.3e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|313126392|ref|YP_004036662.1| - 7.1e-08 32.3 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|313126392|ref|YP_004036662.1| - 0.0034 17.2 0.0 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313126392|ref|YP_004036662.1| - 0.099 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family Epimerase PF01370.21 gi|313126393|ref|YP_004036663.1| - 5.5e-45 153.7 0.3 6.6e-45 153.4 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313126393|ref|YP_004036663.1| - 1.9e-43 149.2 1.0 1.3e-42 146.4 1.0 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|313126393|ref|YP_004036663.1| - 2.3e-17 63.0 0.1 2.8e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|313126393|ref|YP_004036663.1| - 1.6e-12 47.0 0.1 2.1e-12 46.6 0.1 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|313126393|ref|YP_004036663.1| - 1.4e-09 37.6 0.4 1.1e-07 31.3 0.4 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|313126393|ref|YP_004036663.1| - 4.2e-07 29.4 0.0 0.00016 20.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|313126393|ref|YP_004036663.1| - 0.0075 15.7 0.4 0.96 8.9 0.0 2.7 1 1 1 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|313126393|ref|YP_004036663.1| - 0.042 13.7 0.1 0.71 9.8 0.0 2.2 2 0 0 2 2 2 0 KR domain DUF3558 PF12079.8 gi|313126393|ref|YP_004036663.1| - 0.064 13.3 0.1 0.095 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) Arginase PF00491.21 gi|313126394|ref|YP_004036664.1| - 3.5e-74 249.8 5.5 4e-74 249.6 5.5 1.0 1 0 0 1 1 1 1 Arginase family DNA_topoisoIV PF00521.20 gi|313126395|ref|YP_004036665.1| - 1.4e-157 525.0 0.0 2.1e-157 524.4 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|313126395|ref|YP_004036665.1| - 1.9e-81 267.3 8.3 7.2e-16 57.4 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.25 gi|313126396|ref|YP_004036666.1| - 1.8e-61 206.6 0.4 3.6e-61 205.7 0.4 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|313126396|ref|YP_004036666.1| - 1.5e-29 102.0 0.0 3.4e-29 100.8 0.0 1.7 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|313126396|ref|YP_004036666.1| - 1.1e-24 87.0 0.1 7.4e-24 84.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|313126396|ref|YP_004036666.1| - 5.1e-17 62.0 0.0 1.1e-16 60.9 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|313126396|ref|YP_004036666.1| - 0.00023 21.0 0.0 0.00054 19.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Topo-VIb_trans PF09239.11 gi|313126397|ref|YP_004036667.1| - 8.9e-62 207.6 0.0 1.7e-61 206.7 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|313126397|ref|YP_004036667.1| - 5.3e-37 126.5 4.7 7.8e-37 125.9 1.7 2.5 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|313126397|ref|YP_004036667.1| - 8.4e-15 55.3 0.0 2.2e-14 53.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|313126397|ref|YP_004036667.1| - 2.5e-11 43.6 0.0 6.3e-11 42.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|313126397|ref|YP_004036667.1| - 0.0028 17.6 1.5 0.012 15.6 0.0 2.6 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain DUF11 PF01345.18 gi|313126397|ref|YP_004036667.1| - 0.078 13.3 1.1 0.39 11.0 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF11 LAMTOR PF15454.6 gi|313126397|ref|YP_004036667.1| - 0.11 13.2 0.1 0.52 11.0 0.0 2.1 2 0 0 2 2 2 0 Late endosomal/lysosomal adaptor and MAPK and MTOR activator TP6A_N PF04406.14 gi|313126398|ref|YP_004036668.1| - 8.8e-15 54.4 0.3 1.5e-14 53.7 0.3 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Abhydrolase_1 PF00561.20 gi|313126399|ref|YP_004036669.1| - 1.2e-13 51.3 0.0 2.8e-07 30.5 0.0 2.2 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313126399|ref|YP_004036669.1| - 1.3e-10 42.2 9.0 1.6e-10 41.9 9.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313126399|ref|YP_004036669.1| - 7.1e-10 38.6 0.0 3.3e-09 36.4 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|313126399|ref|YP_004036669.1| - 1.6e-05 24.9 0.0 3.8e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 TAP-like protein Esterase PF00756.20 gi|313126399|ref|YP_004036669.1| - 0.0018 18.0 0.6 0.0082 15.8 0.3 1.9 2 0 0 2 2 2 1 Putative esterase Abhydrolase_5 PF12695.7 gi|313126399|ref|YP_004036669.1| - 0.0021 17.8 0.0 0.58 9.9 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|313126399|ref|YP_004036669.1| - 0.047 13.8 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Lactamase_B_3 PF13483.6 gi|313126400|ref|YP_004036670.1| - 1.2e-31 109.8 0.0 1.6e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|313126400|ref|YP_004036670.1| - 0.012 15.1 0.1 0.02 14.4 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Phosphodiest PF01663.22 gi|313126401|ref|YP_004036671.1| - 1.1e-49 170.0 1.7 1.3e-49 169.8 1.7 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|313126401|ref|YP_004036671.1| - 0.00052 19.5 0.1 0.067 12.6 0.0 2.7 3 0 0 3 3 3 2 Sulfatase DUF1501 PF07394.12 gi|313126401|ref|YP_004036671.1| - 0.0037 16.4 0.0 0.0079 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) NAD_binding_5 PF07994.12 gi|313126402|ref|YP_004036672.1| - 5.8e-47 160.6 0.0 9.8e-45 153.3 0.0 2.1 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.17 gi|313126402|ref|YP_004036672.1| - 1e-27 96.5 0.0 1.6e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase TatD_DNase PF01026.21 gi|313126403|ref|YP_004036673.1| - 4.1e-17 62.4 0.0 5.3e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.24 gi|313126404|ref|YP_004036674.1| - 4.2e-38 130.9 0.6 5.7e-38 130.5 0.2 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel PheRS_DBD1 PF18552.1 gi|313126404|ref|YP_004036674.1| - 0.044 13.5 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 PheRS DNA binding domain 1 UbiA PF01040.18 gi|313126405|ref|YP_004036675.1| - 1e-18 67.6 25.6 1e-18 67.6 25.6 2.2 2 1 0 2 2 2 1 UbiA prenyltransferase family AP_endonuc_2 PF01261.24 gi|313126406|ref|YP_004036676.1| - 4.3e-41 140.7 0.4 1.2e-40 139.2 0.1 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|313126406|ref|YP_004036676.1| - 0.061 13.1 0.1 0.54 10.0 0.0 2.6 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus DNA_ligase_A_M PF01068.21 gi|313126407|ref|YP_004036677.1| - 1.2e-47 162.2 0.0 1.8e-47 161.6 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|313126407|ref|YP_004036677.1| - 1.3e-35 123.3 0.0 2.3e-35 122.5 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|313126407|ref|YP_004036677.1| - 1.6e-17 63.9 0.0 5.2e-17 62.3 0.0 2.0 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|313126407|ref|YP_004036677.1| - 2.1e-06 28.2 0.0 3.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 RNA ligase Nop14 PF04147.12 gi|313126407|ref|YP_004036677.1| - 0.88 7.7 6.3 1.2 7.2 6.3 1.1 1 0 0 1 1 1 0 Nop14-like family Proteasome PF00227.26 gi|313126409|ref|YP_004036679.1| - 9.7e-52 175.2 0.6 1.1e-51 175.0 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF555 PF04475.12 gi|313126411|ref|YP_004036681.1| - 1.8e-44 150.2 0.1 2.2e-44 149.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CBS PF00571.28 gi|313126412|ref|YP_004036682.1| - 1.5e-23 83.0 4.1 7.3e-15 55.2 0.3 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|313126412|ref|YP_004036682.1| - 1.1e-11 44.7 0.1 1.7e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|313126412|ref|YP_004036682.1| - 1.7e-10 41.1 0.8 3.3e-10 40.2 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|313126412|ref|YP_004036682.1| - 1.1e-06 28.6 0.0 2e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|313126412|ref|YP_004036682.1| - 6.8e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|313126412|ref|YP_004036682.1| - 0.005 16.7 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|313126412|ref|YP_004036682.1| - 0.012 16.0 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|313126412|ref|YP_004036682.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_Crp_2 PF13545.6 gi|313126412|ref|YP_004036682.1| - 0.04 13.9 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF3084 PF11283.8 gi|313126413|ref|YP_004036683.1| - 0.02 14.8 2.8 0.02 14.8 2.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3084) LptF_LptG PF03739.14 gi|313126413|ref|YP_004036683.1| - 2.9 6.6 8.3 3.4 6.4 8.3 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Wzy_C PF04932.15 gi|313126413|ref|YP_004036683.1| - 7.5 6.2 9.1 2.8 7.6 6.5 1.4 1 1 0 1 1 1 0 O-Antigen ligase p450 PF00067.22 gi|313126414|ref|YP_004036684.1| - 4.2e-78 263.2 0.0 5.4e-78 262.8 0.0 1.1 1 0 0 1 1 1 1 Cytochrome P450 AIRS_C PF02769.22 gi|313126415|ref|YP_004036685.1| - 1.6e-23 83.5 0.0 2.9e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|313126415|ref|YP_004036685.1| - 2.7e-14 53.6 2.7 5.3e-14 52.7 2.7 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.22 gi|313126417|ref|YP_004036687.1| - 6.4e-05 22.4 12.3 0.02 14.2 0.3 3.0 1 1 1 2 2 2 2 Peptidase family M50 Tmemb_185A PF10269.9 gi|313126417|ref|YP_004036687.1| - 0.035 13.8 1.6 0.045 13.4 0.2 1.8 2 0 0 2 2 2 0 Transmembrane Fragile-X-F protein TraB PF01963.17 gi|313126418|ref|YP_004036688.1| - 7.3e-29 101.5 0.0 6.8e-16 58.9 0.0 2.2 2 0 0 2 2 2 2 TraB family DUF2371 PF10177.9 gi|313126418|ref|YP_004036688.1| - 0.12 12.6 0.2 4 7.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) COX7C PF02935.16 gi|313126418|ref|YP_004036688.1| - 0.18 12.1 0.5 2 8.7 0.1 2.7 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc DUF4147 PF13660.6 gi|313126419|ref|YP_004036689.1| - 7.5e-76 254.7 0.7 1.2e-75 254.0 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|313126419|ref|YP_004036689.1| - 6.4e-31 106.8 3.0 1.5e-30 105.5 3.0 1.7 1 0 0 1 1 1 1 MOFRL family HTH_20 PF12840.7 gi|313126420|ref|YP_004036690.1| - 5.3e-14 52.0 0.8 9.7e-14 51.2 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313126420|ref|YP_004036690.1| - 2e-05 24.4 0.1 4.1e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313126420|ref|YP_004036690.1| - 8.8e-05 22.0 0.0 0.00046 19.7 0.0 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|313126420|ref|YP_004036690.1| - 0.0073 16.2 0.0 0.018 14.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313126420|ref|YP_004036690.1| - 0.037 13.9 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|313126420|ref|YP_004036690.1| - 0.056 13.9 0.2 0.85 10.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|313126420|ref|YP_004036690.1| - 1.1 9.4 7.9 0.34 11.1 2.8 2.6 3 1 0 3 3 3 0 DprA winged helix domain DNase-RNase PF02577.14 gi|313126421|ref|YP_004036691.1| - 4.8e-38 129.7 0.0 5.3e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.22 gi|313126424|ref|YP_004036694.1| - 3.6e-184 613.4 0.1 4.9e-184 612.9 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|313126424|ref|YP_004036694.1| - 1.1e-28 100.2 0.4 2e-28 99.2 0.4 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|313126424|ref|YP_004036694.1| - 4.1e-28 98.2 0.0 2.1e-10 39.9 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|313126424|ref|YP_004036694.1| - 0.00073 18.5 0.0 0.025 13.5 0.0 2.6 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|313126424|ref|YP_004036694.1| - 0.0017 17.7 0.0 0.0057 16.0 0.0 1.9 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|313126424|ref|YP_004036694.1| - 0.0036 16.8 0.0 0.015 14.9 0.0 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-FPG_IleRS PF06827.14 gi|313126424|ref|YP_004036694.1| - 0.033 14.1 0.3 0.09 12.7 0.3 1.8 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS FGGY_N PF00370.21 gi|313126426|ref|YP_004036696.1| - 1e-74 251.2 0.0 1.3e-74 250.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|313126426|ref|YP_004036696.1| - 3.1e-61 206.6 0.4 5.5e-61 205.8 0.4 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|313126426|ref|YP_004036696.1| - 0.00013 21.6 0.3 0.0072 15.8 0.1 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.24 gi|313126427|ref|YP_004036697.1| - 6.6e-58 197.0 6.9 8.1e-58 196.7 6.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313126427|ref|YP_004036697.1| - 1.4e-10 40.8 7.3 2e-10 40.3 7.3 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313126427|ref|YP_004036697.1| - 1.1e-08 34.7 1.9 1.9e-07 30.6 1.8 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|313126427|ref|YP_004036697.1| - 2.2e-05 23.9 3.0 3.9e-05 23.1 3.0 1.5 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|313126427|ref|YP_004036697.1| - 0.00055 20.5 2.4 0.17 12.4 2.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|313126427|ref|YP_004036697.1| - 0.0051 17.2 0.1 0.25 11.8 0.0 2.9 3 0 0 3 3 3 1 Putative NAD(P)-binding Thi4 PF01946.17 gi|313126427|ref|YP_004036697.1| - 0.009 15.3 5.5 0.93 8.7 1.3 2.7 3 0 0 3 3 3 2 Thi4 family 3HCDH_N PF02737.18 gi|313126427|ref|YP_004036697.1| - 0.022 14.7 0.6 0.051 13.5 0.6 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|313126427|ref|YP_004036697.1| - 0.03 13.7 11.0 0.17 11.2 11.0 1.9 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|313126427|ref|YP_004036697.1| - 0.07 12.2 3.7 2.5 7.1 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A HI0933_like PF03486.14 gi|313126427|ref|YP_004036697.1| - 0.095 11.4 3.9 1.7 7.3 1.8 2.1 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.16 gi|313126427|ref|YP_004036697.1| - 0.17 11.5 1.2 0.36 10.5 1.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|313126427|ref|YP_004036697.1| - 0.18 12.0 4.7 0.39 11.0 3.7 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|313126427|ref|YP_004036697.1| - 0.32 10.0 6.6 2.6 7.0 1.2 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|313126427|ref|YP_004036697.1| - 0.44 9.8 1.6 0.65 9.2 0.3 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase OrfB_IS605 PF01385.19 gi|313126429|ref|YP_004036699.1| - 2e-21 76.5 2.2 2.4e-21 76.2 0.5 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313126429|ref|YP_004036699.1| - 2.5e-18 65.7 0.1 5.7e-18 64.6 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|313126429|ref|YP_004036699.1| - 0.0037 16.7 0.1 0.007 15.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3445 PF11927.8 gi|313126429|ref|YP_004036699.1| - 0.066 12.8 0.5 0.18 11.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3445) EstA_Ig_like PF18435.1 gi|313126429|ref|YP_004036699.1| - 0.087 13.0 1.1 0.82 9.9 1.1 2.5 1 1 0 1 1 1 0 Esterase Ig-like N-terminal domain Rubredoxin_2 PF18073.1 gi|313126429|ref|YP_004036699.1| - 0.25 11.1 1.8 0.98 9.2 1.9 1.9 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF3958 PF13125.6 gi|313126429|ref|YP_004036699.1| - 5.1 7.3 9.8 1.7 8.9 4.8 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3958) CCG PF02754.16 gi|313126432|ref|YP_004036702.1| - 1.3e-22 79.8 0.6 2.9e-11 43.4 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|313126432|ref|YP_004036702.1| - 3.9e-09 36.8 13.8 4.4e-09 36.7 7.1 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|313126432|ref|YP_004036702.1| - 2.6e-06 27.9 8.8 2.6e-06 27.9 8.8 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|313126432|ref|YP_004036702.1| - 2.3e-05 24.9 12.3 0.013 16.1 0.2 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313126432|ref|YP_004036702.1| - 8.6e-05 22.6 16.6 0.0038 17.3 13.5 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313126432|ref|YP_004036702.1| - 0.00068 19.8 10.2 0.00068 19.8 10.2 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain zf-CSL PF05207.13 gi|313126432|ref|YP_004036702.1| - 0.0014 18.3 7.8 0.071 12.8 0.0 4.7 5 0 0 5 5 5 1 CSL zinc finger Fer4_18 PF13746.6 gi|313126432|ref|YP_004036702.1| - 0.021 15.0 3.8 8.4 6.6 0.5 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain DDE_Tnp_ISAZ013 PF07592.11 gi|313126432|ref|YP_004036702.1| - 0.022 13.8 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF3390 PF11870.8 gi|313126432|ref|YP_004036702.1| - 0.031 14.6 0.0 0.065 13.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) DUF1385 PF07136.11 gi|313126432|ref|YP_004036702.1| - 0.14 11.4 0.1 0.23 10.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) Fer4_16 PF13484.6 gi|313126432|ref|YP_004036702.1| - 0.18 12.8 15.8 0.36 11.8 11.9 3.3 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|313126432|ref|YP_004036702.1| - 2.8 8.1 15.8 0.27 11.4 0.8 3.2 4 0 0 4 4 3 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|313126433|ref|YP_004036703.1| - 2.4e-29 102.7 3.0 2.9e-29 102.4 3.0 1.0 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|313126433|ref|YP_004036703.1| - 1.5e-08 34.4 0.5 0.00011 21.7 2.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|313126433|ref|YP_004036703.1| - 1.1e-06 28.5 1.3 0.0066 16.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313126433|ref|YP_004036703.1| - 3.9e-05 23.0 0.0 0.015 14.6 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|313126433|ref|YP_004036703.1| - 0.00016 20.9 1.3 0.00037 19.7 1.3 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|313126433|ref|YP_004036703.1| - 0.00033 21.1 0.1 0.067 13.8 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313126433|ref|YP_004036703.1| - 0.00063 18.6 0.2 0.21 10.2 0.5 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|313126433|ref|YP_004036703.1| - 0.0032 16.8 0.6 0.37 10.0 0.5 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_7 PF13241.6 gi|313126433|ref|YP_004036703.1| - 0.0092 16.4 0.6 0.03 14.8 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Senescence PF06911.12 gi|313126433|ref|YP_004036703.1| - 0.0094 16.3 2.3 0.11 12.8 0.0 2.2 2 0 0 2 2 2 1 Senescence-associated protein Hemerythrin PF01814.23 gi|313126433|ref|YP_004036703.1| - 0.051 14.2 0.8 0.1 13.3 0.8 1.4 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain Pyr_redox_3 PF13738.6 gi|313126433|ref|YP_004036703.1| - 0.18 11.0 0.1 0.36 10.0 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313126434|ref|YP_004036704.1| - 6.4e-53 180.6 1.2 9e-53 180.1 1.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|313126434|ref|YP_004036704.1| - 4.1e-10 39.8 3.4 5.1e-10 39.5 1.6 2.2 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|313126434|ref|YP_004036704.1| - 1.6e-08 34.1 0.0 7.5e-08 32.0 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313126434|ref|YP_004036704.1| - 1.7e-06 27.4 2.7 1.2e-05 24.6 2.7 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|313126434|ref|YP_004036704.1| - 0.00059 19.2 6.3 0.013 14.8 6.3 2.2 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313126434|ref|YP_004036704.1| - 0.0071 16.6 0.4 0.031 14.5 0.3 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|313126434|ref|YP_004036704.1| - 0.067 13.8 0.5 0.067 13.8 0.5 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|313126434|ref|YP_004036704.1| - 0.14 11.3 0.1 13 4.8 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DAO_C PF16901.5 gi|313126434|ref|YP_004036704.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase AAA_16 PF13191.6 gi|313126435|ref|YP_004036705.1| - 9.5e-14 52.1 1.2 9.5e-14 52.1 1.2 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313126435|ref|YP_004036705.1| - 2.6e-05 24.5 0.0 4.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain MarR_2 PF12802.7 gi|313126435|ref|YP_004036705.1| - 0.0069 16.3 1.0 0.021 14.7 0.4 2.2 2 0 0 2 2 2 1 MarR family AAA_19 PF13245.6 gi|313126435|ref|YP_004036705.1| - 0.018 15.3 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_20 PF12840.7 gi|313126435|ref|YP_004036705.1| - 0.02 15.0 0.2 0.084 12.9 0.2 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain MMR_HSR1 PF01926.23 gi|313126435|ref|YP_004036705.1| - 0.034 14.2 0.0 0.06 13.4 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|313126435|ref|YP_004036705.1| - 0.083 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|313126435|ref|YP_004036705.1| - 0.086 13.0 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313126435|ref|YP_004036705.1| - 0.17 11.9 0.0 0.41 10.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SnoaL_2 PF12680.7 gi|313126435|ref|YP_004036705.1| - 1.2 9.8 14.6 1.4 9.6 1.4 3.8 2 2 2 4 4 4 0 SnoaL-like domain Hydrolase_3 PF08282.12 gi|313126436|ref|YP_004036706.1| - 5.2e-26 91.9 0.0 1.7e-15 57.5 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|313126436|ref|YP_004036706.1| - 2.8e-05 23.8 0.0 0.00025 20.6 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|313126436|ref|YP_004036706.1| - 4.1e-05 24.0 0.0 0.057 13.7 0.0 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|313126436|ref|YP_004036706.1| - 0.043 12.9 0.2 0.17 11.0 0.0 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase HAD_2 PF13419.6 gi|313126436|ref|YP_004036706.1| - 0.13 12.3 0.7 0.58 10.2 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313126436|ref|YP_004036706.1| - 0.47 10.8 2.7 44 4.4 0.6 3.1 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase CutA1 PF03091.15 gi|313126437|ref|YP_004036707.1| - 2.8e-31 107.3 0.0 3.1e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Phage_term_smal PF05944.12 gi|313126437|ref|YP_004036707.1| - 0.053 13.5 0.0 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Phage small terminase subunit Methyltransf_11 PF08241.12 gi|313126439|ref|YP_004036709.1| - 5.7e-20 71.8 0.1 1.4e-19 70.5 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313126439|ref|YP_004036709.1| - 9.4e-17 61.5 0.0 2.3e-16 60.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313126439|ref|YP_004036709.1| - 2.9e-09 36.9 0.0 4.1e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313126439|ref|YP_004036709.1| - 4.6e-07 29.4 0.0 6.3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|313126439|ref|YP_004036709.1| - 4.8e-06 26.5 0.0 6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313126439|ref|YP_004036709.1| - 0.0015 19.2 0.0 0.0032 18.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|313126439|ref|YP_004036709.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase DREV PF05219.12 gi|313126439|ref|YP_004036709.1| - 0.089 11.9 0.0 0.34 10.0 0.0 1.7 2 0 0 2 2 2 0 DREV methyltransferase DUF4350 PF14258.6 gi|313126439|ref|YP_004036709.1| - 0.27 11.7 1.3 32 5.1 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4350) A2L_zn_ribbon PF08792.10 gi|313126440|ref|YP_004036710.1| - 0.0013 18.3 0.1 1 9.2 0.0 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-trcl PF13451.6 gi|313126440|ref|YP_004036710.1| - 0.011 15.6 0.9 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain HypA PF01155.19 gi|313126440|ref|YP_004036710.1| - 0.011 15.7 0.4 0.012 15.7 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-UBR PF02207.20 gi|313126440|ref|YP_004036710.1| - 0.013 15.7 0.4 0.016 15.4 0.4 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) TFIIS_C PF01096.18 gi|313126440|ref|YP_004036710.1| - 0.016 15.0 1.0 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ogr_Delta PF04606.12 gi|313126440|ref|YP_004036710.1| - 0.017 15.1 0.5 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|313126440|ref|YP_004036710.1| - 0.018 15.1 5.5 0.056 13.6 5.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Mcm10 PF09332.11 gi|313126440|ref|YP_004036710.1| - 0.021 14.2 0.1 0.022 14.2 0.1 1.0 1 0 0 1 1 1 0 Mcm10 replication factor Rubredoxin_2 PF18073.1 gi|313126440|ref|YP_004036710.1| - 0.023 14.4 3.6 0.56 10.0 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain MCM_OB PF17207.3 gi|313126440|ref|YP_004036710.1| - 0.044 13.6 0.1 0.046 13.6 0.1 1.0 1 0 0 1 1 1 0 MCM OB domain TackOD1 PF18551.1 gi|313126440|ref|YP_004036710.1| - 0.081 12.6 1.2 0.14 11.8 1.2 1.3 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 DNA_RNApol_7kD PF03604.13 gi|313126440|ref|YP_004036710.1| - 0.1 12.3 3.6 0.57 9.9 3.6 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF35_N PF12172.8 gi|313126440|ref|YP_004036710.1| - 0.13 12.1 3.2 0.37 10.7 3.2 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.6 gi|313126440|ref|YP_004036710.1| - 0.32 11.1 0.2 0.32 11.1 0.2 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|313126440|ref|YP_004036710.1| - 0.56 9.8 3.3 15 5.3 0.2 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF368 PF04018.13 gi|313126441|ref|YP_004036711.1| - 4.4e-64 216.4 21.9 6.1e-64 216.0 21.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) LapA_dom PF06305.11 gi|313126441|ref|YP_004036711.1| - 0.37 10.6 0.0 0.37 10.6 0.0 4.8 6 1 0 6 6 6 0 Lipopolysaccharide assembly protein A domain UDPG_MGDP_dh_N PF03721.14 gi|313126442|ref|YP_004036712.1| - 5.5e-55 185.8 0.2 8.4e-55 185.2 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|313126442|ref|YP_004036712.1| - 5.6e-36 122.6 0.1 1.1e-35 121.7 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|313126442|ref|YP_004036712.1| - 1.3e-28 99.4 0.3 5.7e-28 97.4 0.2 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|313126442|ref|YP_004036712.1| - 3.8e-07 30.2 0.0 8.4e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|313126442|ref|YP_004036712.1| - 3.3e-05 23.9 0.0 0.0003 20.8 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|313126442|ref|YP_004036712.1| - 0.00014 22.4 0.2 0.11 13.1 0.0 3.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|313126442|ref|YP_004036712.1| - 0.00054 19.6 0.2 0.0044 16.7 0.2 2.2 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|313126442|ref|YP_004036712.1| - 0.0043 16.3 0.0 0.0078 15.5 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|313126442|ref|YP_004036712.1| - 0.0088 16.3 0.6 0.044 14.0 0.1 2.5 2 0 0 2 2 2 1 TrkA-N domain Rossmann-like PF10727.9 gi|313126442|ref|YP_004036712.1| - 0.027 14.3 0.0 0.085 12.7 0.0 1.8 2 0 0 2 2 2 0 Rossmann-like domain NAD_binding_2 PF03446.15 gi|313126442|ref|YP_004036712.1| - 0.047 13.9 0.0 1.2 9.3 0.0 2.7 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|313126442|ref|YP_004036712.1| - 0.053 14.1 0.0 0.2 12.2 0.0 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_11 PF14833.6 gi|313126442|ref|YP_004036712.1| - 0.072 13.3 0.1 0.95 9.7 0.1 2.2 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|313126442|ref|YP_004036712.1| - 0.1 11.9 0.0 0.81 9.0 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain STT3 PF02516.14 gi|313126443|ref|YP_004036713.1| - 9.5e-26 90.8 29.3 6.4e-23 81.4 13.1 2.8 2 1 0 2 2 2 2 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|313126443|ref|YP_004036713.1| - 7.5e-23 80.6 5.3 2e-22 79.3 5.3 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain DUF5373 PF17343.2 gi|313126443|ref|YP_004036713.1| - 5.4 6.8 12.8 0.096 12.5 4.9 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5373) HlyIII PF03006.20 gi|313126443|ref|YP_004036713.1| - 5.6 6.6 14.0 0.12 12.1 3.1 2.6 2 0 0 2 2 2 0 Haemolysin-III related GDP_Man_Dehyd PF16363.5 gi|313126444|ref|YP_004036714.1| - 1e-49 169.8 0.4 6.2e-49 167.2 0.4 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|313126444|ref|YP_004036714.1| - 7.3e-49 166.4 0.2 2.3e-48 164.8 0.2 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313126444|ref|YP_004036714.1| - 3.6e-19 68.8 0.0 6.2e-18 64.8 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|313126444|ref|YP_004036714.1| - 2.4e-16 59.7 0.0 3.4e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|313126444|ref|YP_004036714.1| - 9.4e-10 38.1 2.0 4.1e-09 35.9 2.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|313126444|ref|YP_004036714.1| - 1.7e-09 37.2 0.0 2.1e-08 33.7 0.1 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|313126444|ref|YP_004036714.1| - 8.6e-08 32.3 1.0 9.4e-07 28.9 1.0 2.1 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|313126444|ref|YP_004036714.1| - 1.8e-06 28.0 0.0 3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|313126444|ref|YP_004036714.1| - 0.00075 19.8 0.1 0.002 18.4 0.0 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|313126444|ref|YP_004036714.1| - 0.0011 18.5 0.2 0.002 17.6 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|313126444|ref|YP_004036714.1| - 0.011 15.2 0.1 0.28 10.7 0.2 2.6 2 1 0 2 2 2 0 NmrA-like family AlaDh_PNT_C PF01262.21 gi|313126444|ref|YP_004036714.1| - 0.067 12.5 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|313126445|ref|YP_004036715.1| - 1.6e-46 158.7 0.1 1.9e-23 83.2 0.1 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313126445|ref|YP_004036715.1| - 7.2e-46 157.1 0.0 4.7e-23 82.1 0.0 2.2 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|313126445|ref|YP_004036715.1| - 1.4e-19 70.2 0.1 2.9e-17 62.6 0.1 2.2 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|313126445|ref|YP_004036715.1| - 1.3e-15 57.4 0.0 1.1e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|313126445|ref|YP_004036715.1| - 2.7e-08 33.3 0.0 0.00064 19.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|313126445|ref|YP_004036715.1| - 9e-07 29.0 0.0 1.5e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|313126445|ref|YP_004036715.1| - 1.1e-06 28.3 0.9 4.3e-06 26.3 0.3 2.0 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|313126445|ref|YP_004036715.1| - 0.00061 19.4 0.1 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|313126445|ref|YP_004036715.1| - 0.00071 19.8 0.3 0.0015 18.8 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|313126445|ref|YP_004036715.1| - 0.011 15.7 0.1 0.16 11.9 0.1 2.5 2 1 0 2 2 2 0 KR domain RmlD_sub_bind PF04321.17 gi|313126445|ref|YP_004036715.1| - 0.021 14.0 0.7 0.049 12.7 0.1 2.0 3 0 0 3 3 3 0 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 gi|313126445|ref|YP_004036715.1| - 0.047 14.0 0.0 0.094 13.0 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|313126445|ref|YP_004036715.1| - 0.092 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TF_Zn_Ribbon PF08271.12 gi|313126445|ref|YP_004036715.1| - 0.13 11.7 0.1 0.39 10.3 0.1 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|313126445|ref|YP_004036715.1| - 0.17 11.6 1.7 0.24 11.1 0.2 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Epimerase PF01370.21 gi|313126446|ref|YP_004036716.1| - 1e-52 179.1 0.0 1.2e-52 178.8 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313126446|ref|YP_004036716.1| - 5.1e-52 177.3 0.0 6.2e-52 177.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|313126446|ref|YP_004036716.1| - 1.3e-14 53.9 0.0 1.6e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|313126446|ref|YP_004036716.1| - 5.8e-12 45.3 0.0 7.2e-12 45.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|313126446|ref|YP_004036716.1| - 9.8e-12 44.6 0.0 3.4e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|313126446|ref|YP_004036716.1| - 4.3e-08 32.6 0.0 0.00057 19.1 0.0 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|313126446|ref|YP_004036716.1| - 0.0021 17.6 0.0 0.0072 15.8 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|313126446|ref|YP_004036716.1| - 0.0034 17.3 0.0 0.0068 16.3 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Hydrolase_4 PF12146.8 gi|313126446|ref|YP_004036716.1| - 0.02 14.2 0.1 0.057 12.7 0.1 1.6 1 1 0 1 1 1 0 Serine aminopeptidase, S33 KR PF08659.10 gi|313126446|ref|YP_004036716.1| - 0.12 12.3 0.0 0.75 9.7 0.0 2.0 2 0 0 2 2 2 0 KR domain DUF3182 PF11379.8 gi|313126446|ref|YP_004036716.1| - 0.14 11.1 0.0 0.23 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) NmrA PF05368.13 gi|313126446|ref|YP_004036716.1| - 0.15 11.6 0.0 0.61 9.6 0.0 1.9 2 0 0 2 2 2 0 NmrA-like family Glyco_transf_4 PF13439.6 gi|313126446|ref|YP_004036716.1| - 0.16 12.0 0.4 0.71 9.9 0.4 2.1 1 1 0 1 1 1 0 Glycosyltransferase Family 4 NTP_transferase PF00483.23 gi|313126447|ref|YP_004036717.1| - 2.5e-35 122.3 0.0 3e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313126447|ref|YP_004036717.1| - 1.8e-14 54.4 0.0 2.3e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|313126447|ref|YP_004036717.1| - 7.4e-07 29.1 0.1 1.3e-06 28.3 0.1 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.24 gi|313126447|ref|YP_004036717.1| - 0.0012 18.4 4.7 0.35 10.7 0.1 3.2 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313126447|ref|YP_004036717.1| - 0.13 12.0 2.3 3.8 7.3 0.4 3.2 1 1 2 3 3 3 0 Hexapeptide repeat of succinyl-transferase LPG_synthase_TM PF03706.13 gi|313126448|ref|YP_004036718.1| - 1.3e-49 169.4 40.6 1.6e-49 169.1 40.6 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|313126448|ref|YP_004036718.1| - 3.7e-30 105.0 0.0 5.7e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313126448|ref|YP_004036718.1| - 9.9e-12 45.2 0.0 1.8e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 BacteriocIIc_cy PF12173.8 gi|313126448|ref|YP_004036718.1| - 3.1 8.1 13.3 9.3 6.6 0.6 4.2 2 2 2 4 4 4 0 Bacteriocin class IIc cyclic gassericin A-like Glycos_transf_2 PF00535.26 gi|313126449|ref|YP_004036719.1| - 4.3e-16 59.2 0.1 5.6e-16 58.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313126449|ref|YP_004036719.1| - 9.2e-06 25.7 0.0 1e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|313126449|ref|YP_004036719.1| - 0.00013 22.4 0.1 0.00022 21.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|313126449|ref|YP_004036719.1| - 0.028 14.8 0.0 0.037 14.4 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain YflT PF11181.8 gi|313126449|ref|YP_004036719.1| - 0.11 13.0 0.2 0.18 12.4 0.2 1.3 1 0 0 1 1 1 0 Heat induced stress protein YflT NAD_binding_5 PF07994.12 gi|313126449|ref|YP_004036719.1| - 0.12 11.7 0.1 0.18 11.2 0.1 1.1 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase DUF4438 PF14505.6 gi|313126450|ref|YP_004036720.1| - 0.011 14.7 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) DUF608 PF04685.13 gi|313126450|ref|YP_004036720.1| - 0.12 11.5 0.1 1.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Glycosyl-hydrolase family 116, catalytic region YfhO PF09586.10 gi|313126450|ref|YP_004036720.1| - 3 6.0 5.2 0.97 7.6 0.1 2.3 2 1 1 3 3 3 0 Bacterial membrane protein YfhO Arylsulfotran_2 PF14269.6 gi|313126451|ref|YP_004036721.1| - 1e-11 44.8 0.3 9.4e-10 38.3 0.2 2.7 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|313126451|ref|YP_004036721.1| - 1.1e-09 37.7 2.4 2.7e-08 33.1 0.5 3.1 1 1 3 4 4 4 1 Arylsulfotransferase (ASST) PQQ PF01011.21 gi|313126451|ref|YP_004036721.1| - 7.2e-06 25.7 0.5 0.56 10.2 0.0 3.7 3 0 0 3 3 3 2 PQQ enzyme repeat PQQ_2 PF13360.6 gi|313126451|ref|YP_004036721.1| - 0.00023 20.9 5.8 0.00039 20.1 2.6 2.4 2 1 0 2 2 2 1 PQQ-like domain NHL PF01436.21 gi|313126451|ref|YP_004036721.1| - 0.06 13.4 4.0 0.31 11.2 0.1 3.3 3 0 0 3 3 3 0 NHL repeat Methyltransf_21 PF05050.12 gi|313126452|ref|YP_004036722.1| - 6.8e-17 62.0 0.0 8.7e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|313126452|ref|YP_004036722.1| - 8.5e-05 22.4 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|313126452|ref|YP_004036722.1| - 0.0013 18.1 0.0 0.0025 17.2 0.0 1.3 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein MTS PF05175.14 gi|313126452|ref|YP_004036722.1| - 0.0016 18.0 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain SAM_3 PF18016.1 gi|313126452|ref|YP_004036722.1| - 0.0086 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 SAM domain (Sterile alpha motif) GT87 PF09594.10 gi|313126453|ref|YP_004036723.1| - 1.3e-12 47.9 29.3 1.3e-12 47.9 29.3 1.9 2 1 0 2 2 2 1 Glycosyltransferase family 87 Phage_holin_8 PF16931.5 gi|313126453|ref|YP_004036723.1| - 0.77 9.7 6.1 0.3 11.0 2.2 2.3 1 1 1 2 2 2 0 Putative phage holin GT87 PF09594.10 gi|313126454|ref|YP_004036724.1| - 8.5e-18 64.9 22.9 8.5e-18 64.9 22.9 2.7 3 0 0 3 3 3 1 Glycosyltransferase family 87 Glycos_transf_2 PF00535.26 gi|313126455|ref|YP_004036725.1| - 4.6e-06 26.5 0.1 1.2e-05 25.2 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313126455|ref|YP_004036725.1| - 7.7e-06 26.0 1.1 0.077 12.9 0.2 2.5 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313126455|ref|YP_004036725.1| - 0.00021 20.8 0.0 0.21 11.0 0.0 2.1 1 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|313126455|ref|YP_004036725.1| - 0.00028 20.9 1.0 0.00071 19.5 0.7 1.7 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|313126455|ref|YP_004036725.1| - 0.0032 17.0 0.0 0.99 8.9 0.0 2.2 1 1 0 2 2 2 2 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|313126455|ref|YP_004036725.1| - 0.033 13.8 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.20 gi|313126456|ref|YP_004036726.1| - 2.6e-38 131.2 0.0 4e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313126456|ref|YP_004036726.1| - 2.1e-31 109.1 0.2 6.3e-31 107.6 0.2 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313126456|ref|YP_004036726.1| - 4.5e-30 104.9 4.6 8.7e-30 103.9 1.9 2.5 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313126456|ref|YP_004036726.1| - 1.5e-27 97.0 11.0 9.5e-27 94.4 8.3 2.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|313126456|ref|YP_004036726.1| - 1e-05 25.6 0.0 2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|313126456|ref|YP_004036726.1| - 0.00045 20.0 0.4 0.005 16.6 0.4 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|313126456|ref|YP_004036726.1| - 0.0011 19.3 0.1 0.004 17.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF4398 PF14346.6 gi|313126456|ref|YP_004036726.1| - 0.046 14.3 5.0 17 6.1 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4398) DUF3492 PF11997.8 gi|313126456|ref|YP_004036726.1| - 0.14 11.8 0.1 0.31 10.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) Glycos_transf_1 PF00534.20 gi|313126457|ref|YP_004036727.1| - 7.7e-37 126.5 0.0 1.1e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313126457|ref|YP_004036727.1| - 7.6e-26 91.1 0.0 1.9e-25 89.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313126457|ref|YP_004036727.1| - 5.3e-14 52.6 3.3 8.3e-14 51.9 3.3 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|313126457|ref|YP_004036727.1| - 3.5e-12 46.6 0.0 8.5e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|313126457|ref|YP_004036727.1| - 1.1e-10 42.2 5.2 2.1e-10 41.3 5.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|313126457|ref|YP_004036727.1| - 0.0034 17.4 0.0 0.0056 16.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Sulfatase PF00884.23 gi|313126458|ref|YP_004036728.1| - 1.8e-42 145.8 0.1 2.4e-42 145.4 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|313126458|ref|YP_004036728.1| - 1.2e-08 34.9 0.0 8.8e-07 28.8 0.0 2.6 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4994 PF16385.5 gi|313126458|ref|YP_004036728.1| - 2.7e-05 24.0 0.6 0.023 14.6 0.0 2.9 2 1 0 3 3 3 2 Domain of unknown function DUF4976 PF16347.5 gi|313126458|ref|YP_004036728.1| - 0.00011 22.3 0.0 0.00031 21.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF229 PF02995.17 gi|313126458|ref|YP_004036728.1| - 0.0018 17.0 0.0 0.003 16.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|313126458|ref|YP_004036728.1| - 0.0035 16.5 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Sulfatase_C PF14707.6 gi|313126458|ref|YP_004036728.1| - 0.0046 17.7 0.3 0.029 15.1 0.1 2.3 2 0 0 2 2 2 1 C-terminal region of aryl-sulfatase Sulfatase PF00884.23 gi|313126459|ref|YP_004036729.1| - 1e-20 74.4 0.1 1.4e-20 73.9 0.1 1.2 1 0 0 1 1 1 1 Sulfatase DUF4994 PF16385.5 gi|313126460|ref|YP_004036730.1| - 0.00028 20.7 0.1 0.27 11.2 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function DUF4976 PF16347.5 gi|313126460|ref|YP_004036730.1| - 0.0052 17.0 0.1 0.011 16.0 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4976) Sulfatase PF00884.23 gi|313126460|ref|YP_004036730.1| - 0.011 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 Sulfatase Sulfatase_C PF14707.6 gi|313126460|ref|YP_004036730.1| - 0.03 15.1 0.1 0.04 14.7 0.1 1.3 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase Polysacc_synt_3 PF13440.6 gi|313126461|ref|YP_004036731.1| - 8e-13 48.3 7.4 8e-13 48.3 7.4 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|313126461|ref|YP_004036731.1| - 1.9e-12 47.4 13.9 1.9e-12 47.4 13.9 4.1 3 2 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|313126461|ref|YP_004036731.1| - 2e-06 27.4 14.1 2e-06 27.4 14.1 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MrpF_PhaF PF04066.13 gi|313126461|ref|YP_004036731.1| - 0.044 14.2 0.8 0.044 14.2 0.8 4.9 6 0 0 6 6 6 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Glyco_transf_4 PF13439.6 gi|313126462|ref|YP_004036732.1| - 7.3e-32 110.7 5.1 1.4e-31 109.8 5.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313126462|ref|YP_004036732.1| - 2.9e-27 96.1 10.2 2.9e-27 96.1 10.2 2.4 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|313126462|ref|YP_004036732.1| - 1e-26 93.5 0.0 1.6e-26 92.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313126462|ref|YP_004036732.1| - 3.9e-21 75.9 0.0 7.6e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|313126462|ref|YP_004036732.1| - 1.6e-08 34.7 0.0 2.5e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|313126462|ref|YP_004036732.1| - 8.8e-06 25.6 0.4 0.002 17.8 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_tranf_2_3 PF13641.6 gi|313126463|ref|YP_004036733.1| - 2.4e-18 66.9 0.0 3.9e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|313126463|ref|YP_004036733.1| - 3.7e-17 62.7 1.6 7.1e-17 61.7 1.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|313126463|ref|YP_004036733.1| - 2e-14 54.0 0.0 3.4e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|313126463|ref|YP_004036733.1| - 3.9e-11 42.7 0.0 6.5e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|313126463|ref|YP_004036733.1| - 0.00091 18.8 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Anp1 PF03452.14 gi|313126463|ref|YP_004036733.1| - 0.017 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Anp1 Glyco_tranf_2_4 PF13704.6 gi|313126463|ref|YP_004036733.1| - 0.18 12.4 0.5 0.43 11.1 0.2 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|313126464|ref|YP_004036734.1| - 4e-13 49.5 0.1 6.3e-13 48.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313126464|ref|YP_004036734.1| - 4.1e-06 26.9 0.0 6.3e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|313126464|ref|YP_004036734.1| - 0.00026 21.4 0.0 0.00054 20.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|313126464|ref|YP_004036734.1| - 0.016 15.6 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain gpUL132 PF11359.8 gi|313126464|ref|YP_004036734.1| - 0.11 12.0 0.1 0.27 10.7 0.1 1.6 2 0 0 2 2 2 0 Glycoprotein UL132 CoA_binding_2 PF13380.6 gi|313126464|ref|YP_004036734.1| - 0.13 12.7 0.0 0.35 11.4 0.0 1.7 2 0 0 2 2 2 0 CoA binding domain DUF2795 PF11387.8 gi|313126465|ref|YP_004036735.1| - 0.0052 17.0 0.2 0.27 11.5 0.2 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF2795) RHH_1 PF01402.21 gi|313126466|ref|YP_004036736.1| - 0.0046 16.8 0.3 0.0076 16.2 0.0 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family CobS_N PF12556.8 gi|313126467|ref|YP_004036737.1| - 0.015 15.0 0.0 0.039 13.7 0.0 1.6 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal DUF4336 PF14234.6 gi|313126468|ref|YP_004036738.1| - 0.18 11.0 0.0 1.4 8.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4336) Glyoxalase_4 PF13669.6 gi|313126469|ref|YP_004036739.1| - 9.6e-06 25.8 0.4 0.0035 17.6 0.1 3.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|313126469|ref|YP_004036739.1| - 2.5e-05 24.5 0.6 0.038 14.1 0.3 3.2 2 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|313126469|ref|YP_004036739.1| - 0.00016 21.8 0.0 0.11 12.7 0.0 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|313126469|ref|YP_004036739.1| - 0.011 15.6 0.3 2.7 7.9 0.0 3.4 3 1 0 3 3 3 0 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|313126469|ref|YP_004036739.1| - 0.051 14.4 7.2 3.7 8.4 0.0 2.9 2 1 1 3 3 3 0 Glyoxalase-like domain HMGL-like PF00682.19 gi|313126471|ref|YP_004036741.1| - 2.1e-64 217.7 10.5 2.1e-64 217.7 10.5 1.5 2 0 0 2 2 2 1 HMGL-like AP_endonuc_2 PF01261.24 gi|313126471|ref|YP_004036741.1| - 0.016 14.6 2.0 0.022 14.2 0.7 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel HlyD_D4 PF16572.5 gi|313126471|ref|YP_004036741.1| - 0.17 11.8 0.0 0.45 10.4 0.0 1.7 1 0 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB TPP_enzyme_C PF02775.21 gi|313126473|ref|YP_004036743.1| - 5.5e-52 175.6 1.7 6.4e-52 175.4 0.0 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|313126473|ref|YP_004036743.1| - 4.2e-48 163.2 0.4 4.1e-47 160.0 0.4 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|313126473|ref|YP_004036743.1| - 7.8e-46 155.2 0.2 1.9e-45 154.0 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|313126473|ref|YP_004036743.1| - 0.0054 16.5 0.0 0.0088 15.8 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit DUF5612 PF18462.1 gi|313126473|ref|YP_004036743.1| - 0.12 12.1 0.0 0.35 10.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) ALS_ss_C PF10369.9 gi|313126474|ref|YP_004036744.1| - 2.7e-21 75.5 0.0 5.2e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|313126474|ref|YP_004036744.1| - 1.8e-15 56.5 0.0 5.3e-15 55.0 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|313126474|ref|YP_004036744.1| - 3.7e-11 42.6 0.1 1e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|313126474|ref|YP_004036744.1| - 0.0014 19.2 0.0 0.0026 18.3 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|313126474|ref|YP_004036744.1| - 0.0055 16.7 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 ACT domain WIYLD PF10440.9 gi|313126474|ref|YP_004036744.1| - 0.2 11.5 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain IlvN PF07991.12 gi|313126475|ref|YP_004036745.1| - 8.9e-71 236.8 0.1 1.2e-70 236.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|313126475|ref|YP_004036745.1| - 7.8e-64 214.3 0.2 1.1e-63 213.8 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|313126475|ref|YP_004036745.1| - 3.7e-09 37.0 0.1 7.3e-09 36.1 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|313126475|ref|YP_004036745.1| - 7.3e-08 32.0 0.0 1.3e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|313126475|ref|YP_004036745.1| - 5.3e-06 26.7 0.0 1e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|313126475|ref|YP_004036745.1| - 0.0023 17.6 0.0 0.004 16.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 gi|313126475|ref|YP_004036745.1| - 0.0073 16.4 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Mur_ligase PF01225.25 gi|313126475|ref|YP_004036745.1| - 0.011 16.0 0.3 0.029 14.7 0.3 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain NAD_binding_7 PF13241.6 gi|313126475|ref|YP_004036745.1| - 0.015 15.7 0.4 0.25 11.8 0.1 2.7 3 0 0 3 3 3 0 Putative NAD(P)-binding CoA_binding_2 PF13380.6 gi|313126475|ref|YP_004036745.1| - 0.03 14.8 1.3 0.28 11.7 0.5 2.5 1 1 1 2 2 2 0 CoA binding domain GFO_IDH_MocA PF01408.22 gi|313126475|ref|YP_004036745.1| - 0.05 14.4 0.1 0.092 13.6 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|313126475|ref|YP_004036745.1| - 0.05 13.6 0.3 0.94 9.4 0.3 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|313126475|ref|YP_004036745.1| - 0.085 12.7 0.5 0.14 12.0 0.5 1.3 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.18 gi|313126475|ref|YP_004036745.1| - 0.091 12.6 1.5 0.15 11.9 0.5 1.9 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|313126475|ref|YP_004036745.1| - 0.13 11.0 0.4 0.15 10.8 0.4 1.3 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Aconitase PF00330.20 gi|313126477|ref|YP_004036747.1| - 5.3e-147 490.5 0.0 6e-147 490.4 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|313126477|ref|YP_004036747.1| - 0.00023 20.0 0.0 0.00038 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|313126478|ref|YP_004036748.1| - 9.4e-19 68.0 0.0 1.3e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.20 gi|313126479|ref|YP_004036749.1| - 1.4e-85 287.5 0.0 1.6e-85 287.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoRC PF00455.22 gi|313126480|ref|YP_004036750.1| - 9.5e-51 171.9 0.1 1.2e-50 171.5 0.1 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|313126480|ref|YP_004036750.1| - 1.6e-15 56.6 0.2 2.8e-15 55.8 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|313126480|ref|YP_004036750.1| - 3.5e-07 30.2 0.2 8.7e-07 28.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313126480|ref|YP_004036750.1| - 9e-07 28.4 1.4 3.1e-06 26.6 0.3 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313126480|ref|YP_004036750.1| - 1e-06 28.5 0.3 2.3e-06 27.4 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313126480|ref|YP_004036750.1| - 1.4e-06 28.2 0.0 2.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|313126480|ref|YP_004036750.1| - 3.4e-06 26.8 0.0 5.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313126480|ref|YP_004036750.1| - 1.5e-05 24.5 0.1 3.2e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|313126480|ref|YP_004036750.1| - 0.00011 22.1 0.0 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313126480|ref|YP_004036750.1| - 0.0003 20.5 0.1 0.00055 19.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|313126480|ref|YP_004036750.1| - 0.00033 20.5 0.0 0.00076 19.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|313126480|ref|YP_004036750.1| - 0.00065 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313126480|ref|YP_004036750.1| - 0.00071 19.5 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313126480|ref|YP_004036750.1| - 0.0022 17.5 1.5 0.033 13.7 0.2 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|313126480|ref|YP_004036750.1| - 0.0032 17.2 0.4 0.0078 16.0 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_12 PF08461.10 gi|313126480|ref|YP_004036750.1| - 0.004 17.1 0.1 0.017 15.0 0.0 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain DUF505 PF04458.12 gi|313126480|ref|YP_004036750.1| - 0.021 13.2 0.0 0.03 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4423 PF14394.6 gi|313126480|ref|YP_004036750.1| - 0.022 14.5 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DprA_WH PF17782.1 gi|313126480|ref|YP_004036750.1| - 0.043 13.9 0.3 0.076 13.1 0.3 1.4 1 0 0 1 1 1 0 DprA winged helix domain HTH_38 PF13936.6 gi|313126480|ref|YP_004036750.1| - 0.044 13.6 0.1 0.11 12.2 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|313126480|ref|YP_004036750.1| - 0.05 13.9 0.1 0.27 11.6 0.0 2.1 2 0 0 2 2 2 0 Transposase HTH_AsnC-type PF13404.6 gi|313126480|ref|YP_004036750.1| - 0.055 13.3 2.3 0.17 11.7 0.3 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|313126480|ref|YP_004036750.1| - 0.066 13.3 0.2 0.15 12.2 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|313126480|ref|YP_004036750.1| - 0.086 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_CodY PF08222.11 gi|313126480|ref|YP_004036750.1| - 0.11 12.0 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313126480|ref|YP_004036750.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain BRCT_3 PF18428.1 gi|313126480|ref|YP_004036750.1| - 0.22 11.6 0.0 0.4 10.8 0.0 1.4 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain Sigma70_r4_2 PF08281.12 gi|313126480|ref|YP_004036750.1| - 0.34 10.6 1.3 17 5.2 0.1 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 F_bP_aldolase PF01116.20 gi|313126481|ref|YP_004036751.1| - 3.1e-76 256.5 0.0 3.5e-76 256.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II RHH_1 PF01402.21 gi|313126482|ref|YP_004036752.1| - 0.0011 18.9 1.4 0.014 15.3 0.2 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family VAPB_antitox PF02697.14 gi|313126482|ref|YP_004036752.1| - 0.015 16.0 0.3 0.018 15.8 0.3 1.1 1 0 0 1 1 1 0 Putative antitoxin DASH_Dad4 PF08650.10 gi|313126483|ref|YP_004036753.1| - 0.14 12.1 0.1 12 6.0 0.0 2.4 3 0 0 3 3 3 0 DASH complex subunit Dad4 Hydrolase_3 PF08282.12 gi|313126484|ref|YP_004036754.1| - 6e-11 42.6 0.0 0.00023 21.0 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313126484|ref|YP_004036754.1| - 0.0059 16.9 1.2 0.48 10.7 0.1 2.7 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313126484|ref|YP_004036754.1| - 0.037 14.4 1.6 9.1 6.6 0.2 2.9 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase CutC PF03932.14 gi|313126484|ref|YP_004036754.1| - 0.16 11.4 0.0 0.35 10.3 0.0 1.5 2 0 0 2 2 2 0 CutC family MR_MLE_C PF13378.6 gi|313126485|ref|YP_004036755.1| - 6.4e-55 186.1 0.8 8.8e-55 185.6 0.8 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|313126485|ref|YP_004036755.1| - 4.8e-14 52.6 0.1 1.7e-13 50.8 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SBP_bac_11 PF13531.6 gi|313126485|ref|YP_004036755.1| - 0.029 14.1 0.1 0.049 13.4 0.1 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Amidohydro_2 PF04909.14 gi|313126485|ref|YP_004036755.1| - 0.056 13.2 0.8 0.13 12.0 0.2 1.8 2 0 0 2 2 2 0 Amidohydrolase MOSC PF03473.17 gi|313126486|ref|YP_004036756.1| - 7.6e-09 35.7 0.1 1.2e-08 35.0 0.1 1.3 1 0 0 1 1 1 1 MOSC domain Rubrerythrin PF02915.17 gi|313126487|ref|YP_004036757.1| - 0.0019 18.6 0.5 0.0066 16.9 0.2 1.8 2 0 0 2 2 2 1 Rubrerythrin MCPsignal PF00015.21 gi|313126488|ref|YP_004036758.1| - 7.4e-43 146.3 54.9 3.7e-41 140.8 30.2 3.3 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|313126488|ref|YP_004036758.1| - 1.1e-26 93.7 0.2 4.4e-26 91.7 0.0 2.2 2 1 0 2 2 2 1 Protoglobin DUF948 PF06103.11 gi|313126488|ref|YP_004036758.1| - 0.0014 18.9 33.1 0.15 12.3 2.5 4.8 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|313126488|ref|YP_004036758.1| - 0.019 15.0 41.6 0.86 9.6 4.0 4.9 2 2 3 5 5 5 0 Laminin Domain II DUF1664 PF07889.12 gi|313126488|ref|YP_004036758.1| - 0.047 13.7 32.3 1.1 9.3 3.4 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) DUF1842 PF08896.10 gi|313126488|ref|YP_004036758.1| - 0.058 13.7 0.1 0.14 12.4 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1842) ApoO PF09769.9 gi|313126488|ref|YP_004036758.1| - 0.066 13.2 0.3 0.066 13.2 0.3 3.7 3 1 0 3 3 3 0 Apolipoprotein O Spc7 PF08317.11 gi|313126488|ref|YP_004036758.1| - 0.067 12.1 33.9 0.41 9.5 17.2 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein HisKA_3 PF07730.13 gi|313126488|ref|YP_004036758.1| - 0.5 10.9 27.3 1.3 9.5 0.3 5.3 3 1 1 4 4 4 0 Histidine kinase TMP_2 PF06791.13 gi|313126488|ref|YP_004036758.1| - 1.3 8.7 30.8 0.22 11.2 14.0 3.1 1 1 2 3 3 3 0 Prophage tail length tape measure protein BLOC1_2 PF10046.9 gi|313126488|ref|YP_004036758.1| - 1.7 9.0 31.8 1.1 9.5 4.5 4.7 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF677 PF05055.12 gi|313126488|ref|YP_004036758.1| - 1.9 7.3 29.2 1.2 8.0 9.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF677) NPV_P10 PF05531.12 gi|313126488|ref|YP_004036758.1| - 8.4 6.9 24.3 2.8 8.5 1.6 5.9 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Lactamase_B PF00753.27 gi|313126489|ref|YP_004036759.1| - 1.7e-13 51.0 3.8 2.7e-13 50.4 3.8 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|313126489|ref|YP_004036759.1| - 2.3e-12 47.4 0.0 4.4e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|313126489|ref|YP_004036759.1| - 0.00015 21.3 1.0 0.00032 20.3 1.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|313126489|ref|YP_004036759.1| - 0.01 15.7 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain T2SSG PF08334.11 gi|313126489|ref|YP_004036759.1| - 0.054 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein G Fer2 PF00111.27 gi|313126490|ref|YP_004036760.1| - 1.2e-11 44.3 2.6 1.6e-11 44.0 2.6 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|313126490|ref|YP_004036760.1| - 0.036 14.1 0.2 0.038 14.0 0.2 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF839 PF05787.13 gi|313126491|ref|YP_004036761.1| - 3.9e-24 85.7 16.5 8.6e-21 74.7 9.2 3.4 2 1 1 3 3 3 3 Bacterial protein of unknown function (DUF839) TAT_signal PF10518.9 gi|313126491|ref|YP_004036761.1| - 2.9 7.9 6.6 6 6.9 6.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Usp PF00582.26 gi|313126493|ref|YP_004036763.1| - 1.6e-39 135.6 0.7 1.8e-39 135.5 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|313126493|ref|YP_004036763.1| - 0.0082 15.8 0.1 0.031 13.9 0.0 1.8 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain GARS_N PF02844.15 gi|313126493|ref|YP_004036763.1| - 0.11 13.3 0.1 0.24 12.2 0.1 1.8 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain PMT_2 PF13231.6 gi|313126495|ref|YP_004036765.1| - 4.5e-12 46.5 5.1 4.5e-12 46.5 5.1 3.3 3 1 2 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|313126495|ref|YP_004036765.1| - 0.00028 20.5 4.4 0.00028 20.5 4.4 2.5 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Flg_new PF09479.10 gi|313126496|ref|YP_004036766.1| - 0.18 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Listeria-Bacteroides repeat domain (List_Bact_rpt) DUF4157 PF13699.6 gi|313126497|ref|YP_004036767.1| - 5.8e-31 106.6 0.9 1.3e-30 105.4 0.9 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313126497|ref|YP_004036767.1| - 0.017 15.5 0.5 0.032 14.6 0.5 1.5 1 0 0 1 1 1 0 Effector protein HTH_35 PF13693.6 gi|313126497|ref|YP_004036767.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TFIIB PF00382.19 gi|313126498|ref|YP_004036768.1| - 6.2e-44 147.9 1.4 9.1e-24 83.3 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313126498|ref|YP_004036768.1| - 1e-18 66.6 1.1 1.6e-18 65.9 1.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|313126498|ref|YP_004036768.1| - 0.0063 16.2 0.2 0.012 15.3 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|313126498|ref|YP_004036768.1| - 0.013 15.2 1.7 0.044 13.5 1.6 1.9 1 1 1 2 2 2 0 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|313126498|ref|YP_004036768.1| - 0.015 14.8 1.0 0.36 10.4 0.1 3.4 3 1 0 3 3 3 0 Sigma-70, region 4 Zn-ribbon_8 PF09723.10 gi|313126498|ref|YP_004036768.1| - 0.042 14.0 1.3 2.5 8.3 0.3 2.5 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|313126498|ref|YP_004036768.1| - 0.071 13.0 0.3 0.2 11.6 0.2 1.8 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|313126498|ref|YP_004036768.1| - 0.075 12.9 0.4 0.74 9.7 0.1 2.8 3 0 0 3 3 3 0 Homeodomain-like domain IBR PF01485.21 gi|313126498|ref|YP_004036768.1| - 0.078 13.2 0.5 0.15 12.3 0.5 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain HTH_3 PF01381.22 gi|313126498|ref|YP_004036768.1| - 0.1 12.6 0.1 7.4 6.7 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix Cyclin_C PF02984.19 gi|313126498|ref|YP_004036768.1| - 0.11 12.6 0.0 0.84 9.7 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Trm112p PF03966.16 gi|313126498|ref|YP_004036768.1| - 0.14 12.7 0.4 0.46 11.1 0.4 1.9 1 0 0 1 1 1 0 Trm112p-like protein Nudix_N_2 PF14803.6 gi|313126498|ref|YP_004036768.1| - 0.16 11.9 2.3 5 7.1 0.5 2.5 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|313126498|ref|YP_004036768.1| - 0.42 10.6 2.4 0.89 9.6 2.4 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon LTD PF00932.19 gi|313126499|ref|YP_004036769.1| - 7.5e-26 90.7 1.3 7.5e-26 90.7 1.3 2.0 2 1 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|313126499|ref|YP_004036769.1| - 4.4e-21 75.4 0.0 6.2e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue CAP59_mtransfer PF11735.8 gi|313126500|ref|YP_004036770.1| - 0.0017 18.1 0.0 0.0078 15.9 0.0 1.8 2 0 0 2 2 2 1 Cryptococcal mannosyltransferase 1 MTS PF05175.14 gi|313126501|ref|YP_004036771.1| - 1.8e-12 47.1 0.1 2.7e-12 46.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|313126501|ref|YP_004036771.1| - 3.5e-10 39.8 0.3 4.9e-10 39.3 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|313126501|ref|YP_004036771.1| - 7e-10 39.5 0.0 1.4e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|313126501|ref|YP_004036771.1| - 3.3e-09 36.7 0.0 9.9e-09 35.2 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|313126501|ref|YP_004036771.1| - 2.7e-08 33.8 0.0 3.9e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|313126501|ref|YP_004036771.1| - 8.8e-08 32.0 0.0 1.2e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|313126501|ref|YP_004036771.1| - 4.4e-07 30.5 0.0 8.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313126501|ref|YP_004036771.1| - 4.9e-05 22.8 0.0 8.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|313126501|ref|YP_004036771.1| - 0.00026 21.0 0.0 0.00031 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313126501|ref|YP_004036771.1| - 0.00091 19.1 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313126501|ref|YP_004036771.1| - 0.0095 16.7 0.0 0.018 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|313126501|ref|YP_004036771.1| - 0.029 14.3 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|313126501|ref|YP_004036771.1| - 0.037 13.3 0.0 0.049 12.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|313126501|ref|YP_004036771.1| - 0.12 12.4 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 gi|313126501|ref|YP_004036771.1| - 0.15 11.7 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|313126501|ref|YP_004036771.1| - 0.17 11.6 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|313126501|ref|YP_004036771.1| - 0.24 11.0 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Rhomboid PF01694.22 gi|313126502|ref|YP_004036772.1| - 1.3e-08 35.0 14.1 1.3e-08 35.0 14.1 2.7 3 1 0 3 3 3 1 Rhomboid family Herpes_US9 PF06072.11 gi|313126502|ref|YP_004036772.1| - 8.1 6.4 7.7 1.1 9.2 2.0 2.6 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 UPF0058 PF01893.16 gi|313126503|ref|YP_004036773.1| - 6.3e-34 116.1 1.9 7e-34 116.0 1.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 T7SS_ESX_EspC PF10824.8 gi|313126503|ref|YP_004036773.1| - 0.033 14.7 0.1 0.048 14.1 0.1 1.3 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm RHH_1 PF01402.21 gi|313126504|ref|YP_004036774.1| - 0.00022 21.0 0.1 0.00029 20.6 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|313126504|ref|YP_004036774.1| - 0.048 13.5 0.0 0.06 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator RHH_5 PF07878.11 gi|313126504|ref|YP_004036774.1| - 0.081 12.8 0.1 0.28 11.1 0.1 1.9 1 1 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Oxidored_molyb PF00174.19 gi|313126505|ref|YP_004036775.1| - 5.9e-36 123.7 0.0 7.2e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Chorismate_bind PF00425.18 gi|313126506|ref|YP_004036776.1| - 1.6e-74 250.7 0.0 2.1e-74 250.3 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.18 gi|313126507|ref|YP_004036777.1| - 2.5e-38 131.4 0.0 5.7e-38 130.2 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|313126507|ref|YP_004036777.1| - 9.5e-11 41.8 0.0 1.3e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|313126507|ref|YP_004036777.1| - 4.8e-10 39.4 0.0 1.7e-09 37.7 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GRDA PF04723.14 gi|313126507|ref|YP_004036777.1| - 0.0041 16.9 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Glycine reductase complex selenoprotein A PucR PF07905.11 gi|313126507|ref|YP_004036777.1| - 0.13 12.6 0.0 25 5.2 0.0 2.6 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family ECH_1 PF00378.20 gi|313126510|ref|YP_004036780.1| - 1.1e-52 178.9 0.0 1.8e-51 174.9 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313126510|ref|YP_004036780.1| - 1.1e-16 61.3 0.0 2.3e-16 60.2 0.0 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase PAS_9 PF13426.7 gi|313126511|ref|YP_004036781.1| - 2.6e-36 124.0 0.2 6.1e-21 74.6 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|313126511|ref|YP_004036781.1| - 1.5e-23 83.0 0.1 1.3e-10 41.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|313126511|ref|YP_004036781.1| - 6.8e-23 81.0 3.0 1.4e-13 51.1 0.1 3.1 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|313126511|ref|YP_004036781.1| - 1.9e-18 66.5 0.0 1.3e-08 35.0 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|313126511|ref|YP_004036781.1| - 9.1e-16 58.4 0.1 1e-14 55.0 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|313126511|ref|YP_004036781.1| - 5e-09 36.2 1.2 1.6e-08 34.6 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|313126511|ref|YP_004036781.1| - 1.3e-07 31.4 0.1 0.016 15.2 0.0 3.4 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|313126511|ref|YP_004036781.1| - 7.2e-07 29.6 0.0 1.5e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|313126511|ref|YP_004036781.1| - 9.8e-07 29.5 0.0 1e-05 26.2 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|313126511|ref|YP_004036781.1| - 3.8e-05 24.0 0.1 0.0006 20.1 0.0 2.7 3 0 0 3 3 3 1 GAF domain HATPase_c_3 PF13589.6 gi|313126511|ref|YP_004036781.1| - 0.00023 21.0 0.0 0.00048 20.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|313126511|ref|YP_004036781.1| - 0.031 13.9 0.2 0.075 12.6 0.0 1.7 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase Dala_Dala_lig_C PF07478.13 gi|313126511|ref|YP_004036781.1| - 0.059 12.9 0.8 9.6 5.7 0.1 2.4 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus FUSC PF04632.12 gi|313126511|ref|YP_004036781.1| - 0.066 11.7 1.8 0.11 11.1 1.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF5132 PF17195.4 gi|313126511|ref|YP_004036781.1| - 0.17 12.0 0.8 0.41 10.8 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF5132) UbiA PF01040.18 gi|313126512|ref|YP_004036782.1| - 7.2e-38 130.3 19.5 8.9e-38 130.0 19.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MR_MLE_C PF13378.6 gi|313126513|ref|YP_004036783.1| - 1.7e-42 145.5 8.2 1.7e-42 145.5 8.2 1.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like Radical_SAM PF04055.21 gi|313126513|ref|YP_004036783.1| - 0.00012 22.5 0.1 0.0078 16.6 0.1 2.2 1 1 0 1 1 1 1 Radical SAM superfamily MAAL_C PF07476.11 gi|313126513|ref|YP_004036783.1| - 0.0082 15.3 0.1 0.015 14.5 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DeoC PF01791.9 gi|313126513|ref|YP_004036783.1| - 0.0095 15.6 0.1 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 DeoC/LacD family aldolase ECH_1 PF00378.20 gi|313126514|ref|YP_004036784.1| - 4.1e-51 173.7 0.0 4.7e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313126514|ref|YP_004036784.1| - 4.1e-32 112.0 0.2 1.1e-27 97.4 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NADHdh PF00146.21 gi|313126515|ref|YP_004036785.1| - 9.7e-96 320.6 16.2 1.2e-95 320.3 16.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase HTH_10 PF04967.12 gi|313126516|ref|YP_004036786.1| - 1.1e-16 60.4 0.3 1.8e-16 59.6 0.3 1.4 1 0 0 1 1 1 1 HTH DNA binding domain DUF2061 PF09834.9 gi|313126517|ref|YP_004036787.1| - 1.2e-17 64.1 2.8 1.4e-17 64.0 2.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) ThuA PF06283.11 gi|313126518|ref|YP_004036788.1| - 9.9e-33 114.1 0.0 1.2e-32 113.9 0.0 1.1 1 0 0 1 1 1 1 Trehalose utilisation SWIM PF04434.17 gi|313126519|ref|YP_004036789.1| - 5.6e-06 25.9 0.0 8.7e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger UPF0489 PF12640.7 gi|313126520|ref|YP_004036790.1| - 0.14 12.4 0.6 0.6 10.3 0.2 2.2 2 1 0 2 2 2 0 UPF0489 domain TAT_signal PF10518.9 gi|313126520|ref|YP_004036790.1| - 0.17 11.7 0.1 0.3 11.0 0.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.9 gi|313126521|ref|YP_004036791.1| - 0.05 13.5 1.5 0.18 11.7 1.5 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GPHR_N PF12537.8 gi|313126522|ref|YP_004036792.1| - 0.27 11.4 1.4 0.31 11.1 1.4 1.2 1 0 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF4838 PF16126.5 gi|313126523|ref|YP_004036793.1| - 0.0031 16.9 0.0 0.0044 16.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4838) Glyco_hydro_42 PF02449.15 gi|313126523|ref|YP_004036793.1| - 0.021 14.2 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Beta-galactosidase PyrI PF01948.18 gi|313126525|ref|YP_004036795.1| - 3.1e-33 113.9 0.5 4e-33 113.5 0.5 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|313126525|ref|YP_004036795.1| - 1.5e-14 53.6 0.2 2.8e-14 52.8 0.2 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|313126526|ref|YP_004036796.1| - 3.8e-46 156.8 0.0 6.8e-46 156.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|313126526|ref|YP_004036796.1| - 3.3e-27 95.5 0.0 4.4e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DICT PF10069.9 gi|313126527|ref|YP_004036797.1| - 1.7e-07 31.0 0.0 2.9e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system ELFV_dehydrog PF00208.21 gi|313126528|ref|YP_004036798.1| - 6.9e-74 248.6 0.3 9.4e-74 248.2 0.3 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|313126528|ref|YP_004036798.1| - 6.2e-54 181.4 0.0 1.1e-53 180.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|313126528|ref|YP_004036798.1| - 0.0009 18.6 0.1 0.0018 17.7 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|313126528|ref|YP_004036798.1| - 0.011 14.5 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase IlvN PF07991.12 gi|313126528|ref|YP_004036798.1| - 0.018 14.6 0.2 0.028 14.0 0.2 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ELFV_dehydrog PF00208.21 gi|313126529|ref|YP_004036799.1| - 3e-74 249.8 0.0 9.6e-74 248.2 0.0 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|313126529|ref|YP_004036799.1| - 1.1e-55 187.0 0.0 2e-55 186.2 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|313126529|ref|YP_004036799.1| - 0.00047 19.6 0.0 0.00082 18.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|313126529|ref|YP_004036799.1| - 0.05 13.2 0.1 0.077 12.6 0.1 1.5 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|313126529|ref|YP_004036799.1| - 0.056 13.9 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Bac_GDH PF05088.12 gi|313126529|ref|YP_004036799.1| - 0.15 9.5 0.0 0.27 8.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase HpcH_HpaI PF03328.14 gi|313126530|ref|YP_004036800.1| - 2.6e-49 167.4 0.6 3.4e-49 167.0 0.6 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|313126530|ref|YP_004036800.1| - 7.9e-10 38.4 0.0 1.4e-06 27.7 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold MaoC_dehydratas PF01575.19 gi|313126531|ref|YP_004036801.1| - 1.7e-24 85.7 0.2 2.1e-24 85.4 0.2 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313126531|ref|YP_004036801.1| - 5.9e-06 26.5 0.2 1.7e-05 24.9 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|313126531|ref|YP_004036801.1| - 0.08 13.3 0.2 0.38 11.2 0.2 2.1 1 1 0 1 1 1 0 Thioesterase superfamily bPH_2 PF03703.14 gi|313126532|ref|YP_004036802.1| - 1e-14 54.4 0.0 1.9e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF3811 PF11656.8 gi|313126532|ref|YP_004036802.1| - 0.081 13.3 0.4 0.13 12.6 0.4 1.3 1 0 0 1 1 1 0 YjbD family (DUF3811) bPH_2 PF03703.14 gi|313126533|ref|YP_004036803.1| - 4.7e-12 45.9 0.2 7.6e-12 45.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF63 PF01889.17 gi|313126534|ref|YP_004036804.1| - 0.012 15.9 0.4 0.014 15.6 0.4 1.1 1 0 0 1 1 1 0 Membrane protein of unknown function DUF63 Carboxyl_trans PF01039.22 gi|313126535|ref|YP_004036805.1| - 5.5e-128 427.7 0.0 7.6e-128 427.2 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain FBPase PF00316.20 gi|313126536|ref|YP_004036806.1| - 4.7e-24 84.9 0.1 6.9e-24 84.4 0.1 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|313126536|ref|YP_004036806.1| - 0.0001 22.0 0.1 0.00032 20.3 0.0 1.7 2 0 0 2 2 2 1 Inositol monophosphatase family SEO_C PF14577.6 gi|313126536|ref|YP_004036806.1| - 0.04 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Sieve element occlusion C-terminus HHH_5 PF14520.6 gi|313126537|ref|YP_004036807.1| - 2.1e-07 31.5 0.0 0.00037 21.0 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|313126537|ref|YP_004036807.1| - 0.035 14.3 0.0 2.8 8.2 0.0 2.3 2 0 0 2 2 2 0 Pathogenicity locus DUF4332 PF14229.6 gi|313126537|ref|YP_004036807.1| - 0.077 13.2 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) TMP-TENI PF02581.17 gi|313126537|ref|YP_004036807.1| - 0.17 11.2 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase 3HCDH_N PF02737.18 gi|313126538|ref|YP_004036808.1| - 1.5e-62 210.7 1.8 1.9e-62 210.3 1.8 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|313126538|ref|YP_004036808.1| - 2.6e-33 114.5 0.3 1.9e-32 111.7 0.0 2.3 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|313126538|ref|YP_004036808.1| - 0.006 16.0 0.1 0.011 15.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|313126538|ref|YP_004036808.1| - 0.011 15.9 3.0 0.014 15.5 2.2 1.8 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|313126538|ref|YP_004036808.1| - 0.017 14.4 0.7 0.028 13.7 0.7 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|313126538|ref|YP_004036808.1| - 0.026 14.1 0.5 0.044 13.4 0.5 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short_C2 PF13561.6 gi|313126538|ref|YP_004036808.1| - 0.046 13.3 2.1 0.076 12.6 2.1 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase F420_oxidored PF03807.17 gi|313126538|ref|YP_004036808.1| - 0.048 14.2 1.9 0.18 12.4 0.4 2.4 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DAZAP2 PF11029.8 gi|313126538|ref|YP_004036808.1| - 0.2 12.6 0.2 0.44 11.5 0.0 1.6 2 0 0 2 2 2 0 DAZ associated protein 2 (DAZAP2) DUF5633 PF18656.1 gi|313126539|ref|YP_004036809.1| - 0.22 11.5 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5633) DUF4538 PF15061.6 gi|313126540|ref|YP_004036810.1| - 8.9 6.1 6.4 0.91 9.3 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) ABC_tran PF00005.27 gi|313126541|ref|YP_004036811.1| - 7.6e-29 101.0 0.0 1.4e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126541|ref|YP_004036811.1| - 5.1e-12 46.2 0.0 1.2e-05 25.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313126541|ref|YP_004036811.1| - 2.8e-07 31.2 0.1 1e-06 29.4 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_22 PF13401.6 gi|313126541|ref|YP_004036811.1| - 0.0021 18.3 0.0 0.0043 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|313126541|ref|YP_004036811.1| - 0.0059 17.1 0.0 0.0098 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313126541|ref|YP_004036811.1| - 0.027 14.2 0.3 0.056 13.2 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|313126541|ref|YP_004036811.1| - 0.028 14.2 0.0 0.4 10.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|313126541|ref|YP_004036811.1| - 0.045 13.5 0.0 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|313126541|ref|YP_004036811.1| - 0.051 13.2 0.0 0.089 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313126541|ref|YP_004036811.1| - 0.095 12.9 0.2 0.42 10.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|313126541|ref|YP_004036811.1| - 0.13 11.8 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|313126541|ref|YP_004036811.1| - 0.19 11.5 0.1 0.35 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|313126541|ref|YP_004036811.1| - 0.25 11.3 0.0 0.39 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ABC2_membrane_2 PF12679.7 gi|313126542|ref|YP_004036812.1| - 6.3e-08 32.2 0.5 4.9e-07 29.3 0.5 2.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313126542|ref|YP_004036812.1| - 0.00073 18.7 15.3 0.00073 18.7 15.3 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF2625 PF10946.8 gi|313126542|ref|YP_004036812.1| - 0.16 11.0 0.0 0.32 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF2625 ABC2_membrane_3 PF12698.7 gi|313126543|ref|YP_004036813.1| - 5.5e-17 61.9 0.0 7.2e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|313126543|ref|YP_004036813.1| - 4e-14 52.6 4.3 5.5e-14 52.1 4.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|313126543|ref|YP_004036813.1| - 2.8e-08 33.5 2.1 2.8e-08 33.5 2.1 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|313126543|ref|YP_004036813.1| - 1.3e-06 28.5 2.7 5.7e-06 26.4 1.4 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313126543|ref|YP_004036813.1| - 0.00097 18.7 1.3 0.0017 18.0 0.2 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein FA_desaturase PF00487.24 gi|313126543|ref|YP_004036813.1| - 7.1 6.4 5.6 1.2 8.9 1.8 1.7 2 1 0 2 2 2 0 Fatty acid desaturase CENP-F_leu_zip PF10473.9 gi|313126544|ref|YP_004036814.1| - 0.00011 22.3 3.8 0.00013 22.0 3.8 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Med9 PF07544.13 gi|313126544|ref|YP_004036814.1| - 0.0015 18.5 3.9 0.0028 17.7 3.9 1.4 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.9 gi|313126544|ref|YP_004036814.1| - 0.0029 16.8 0.9 0.0029 16.8 0.9 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|313126544|ref|YP_004036814.1| - 0.0046 15.9 7.1 0.0053 15.7 7.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein YabA PF06156.13 gi|313126544|ref|YP_004036814.1| - 0.0049 17.5 2.4 0.0064 17.1 2.4 1.2 1 0 0 1 1 1 1 Initiation control protein YabA eIF3_N PF09440.10 gi|313126544|ref|YP_004036814.1| - 0.012 16.1 2.4 0.016 15.7 2.4 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain SKA1 PF07160.12 gi|313126544|ref|YP_004036814.1| - 0.016 15.0 1.9 0.019 14.8 1.9 1.0 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 RmuC PF02646.16 gi|313126544|ref|YP_004036814.1| - 0.021 13.9 2.7 0.024 13.8 2.3 1.3 1 1 0 1 1 1 0 RmuC family Rop-like PF05082.13 gi|313126544|ref|YP_004036814.1| - 0.021 14.6 2.1 0.041 13.7 0.3 2.2 1 1 1 2 2 2 0 Rop-like T2SSM PF04612.12 gi|313126544|ref|YP_004036814.1| - 0.026 14.6 6.6 0.027 14.5 6.0 1.3 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein M FTA4 PF13093.6 gi|313126544|ref|YP_004036814.1| - 0.032 14.1 4.7 0.04 13.8 4.7 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Synaptonemal_3 PF15191.6 gi|313126544|ref|YP_004036814.1| - 0.034 13.9 0.4 0.053 13.3 0.4 1.2 1 0 0 1 1 1 0 Synaptonemal complex central element protein 3 RP-C_C PF11800.8 gi|313126544|ref|YP_004036814.1| - 0.035 14.2 5.6 0.044 13.9 5.6 1.1 1 0 0 1 1 1 0 Replication protein C C-terminal region SPX PF03105.19 gi|313126544|ref|YP_004036814.1| - 0.041 13.8 3.7 0.049 13.5 3.7 1.1 1 0 0 1 1 1 0 SPX domain DUF1664 PF07889.12 gi|313126544|ref|YP_004036814.1| - 0.064 13.3 1.0 0.099 12.7 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2381 PF09544.10 gi|313126544|ref|YP_004036814.1| - 0.11 12.0 6.3 0.12 11.9 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) Laminin_II PF06009.12 gi|313126544|ref|YP_004036814.1| - 0.13 12.3 5.4 0.088 12.8 1.6 1.9 1 1 1 2 2 2 0 Laminin Domain II Fib_alpha PF08702.10 gi|313126544|ref|YP_004036814.1| - 0.13 12.4 1.1 0.16 12.1 1.1 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Fungal_TACC PF12709.7 gi|313126544|ref|YP_004036814.1| - 0.15 12.5 2.6 0.3 11.6 2.6 1.5 1 1 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF3782 PF12644.7 gi|313126544|ref|YP_004036814.1| - 0.2 11.8 3.3 0.39 10.9 3.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Prominin PF05478.11 gi|313126544|ref|YP_004036814.1| - 0.25 9.2 0.3 0.27 9.2 0.3 1.0 1 0 0 1 1 1 0 Prominin LPD22 PF18834.1 gi|313126544|ref|YP_004036814.1| - 0.26 11.5 10.7 0.31 11.3 6.7 2.4 1 1 1 2 2 2 0 Large polyvalent protein associated domain 22 TMPIT PF07851.13 gi|313126544|ref|YP_004036814.1| - 0.29 10.4 1.0 0.33 10.2 1.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein Trimer_CC PF08954.11 gi|313126544|ref|YP_004036814.1| - 0.49 10.0 7.4 0.98 9.0 7.3 1.6 1 1 0 1 1 1 0 Trimerisation motif Swi5 PF07061.11 gi|313126544|ref|YP_004036814.1| - 0.59 10.3 5.7 1.2 9.2 4.8 2.0 1 1 1 2 2 2 0 Swi5 EMP24_GP25L PF01105.24 gi|313126544|ref|YP_004036814.1| - 0.77 9.7 4.5 0.42 10.5 2.6 1.6 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD FUSC PF04632.12 gi|313126544|ref|YP_004036814.1| - 0.81 8.1 9.0 0.94 7.9 9.0 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family XhlA PF10779.9 gi|313126544|ref|YP_004036814.1| - 0.97 9.7 7.1 0.16 12.2 2.3 2.0 2 1 1 3 3 2 0 Haemolysin XhlA V_ATPase_I PF01496.19 gi|313126544|ref|YP_004036814.1| - 1.1 7.1 4.0 1.2 7.0 4.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AATF-Che1 PF13339.6 gi|313126544|ref|YP_004036814.1| - 1.6 9.4 6.4 2.3 8.9 6.4 1.3 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF4407 PF14362.6 gi|313126544|ref|YP_004036814.1| - 1.9 7.8 13.8 2.4 7.4 13.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PspB PF06667.12 gi|313126544|ref|YP_004036814.1| - 3.7 7.7 6.8 6.2 7.0 3.6 2.3 1 1 1 2 2 2 0 Phage shock protein B Spc24 PF08286.11 gi|313126544|ref|YP_004036814.1| - 3.8 7.8 8.7 8.8 6.6 8.7 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DivIVA PF05103.13 gi|313126544|ref|YP_004036814.1| - 4.3 7.4 13.4 6.8 6.8 13.4 1.3 1 1 0 1 1 1 0 DivIVA protein SlyX PF04102.12 gi|313126544|ref|YP_004036814.1| - 6.5 7.5 10.9 3 8.5 2.9 2.6 1 1 1 2 2 2 0 SlyX PALP PF00291.25 gi|313126545|ref|YP_004036815.1| - 1.4e-57 195.3 1.5 1.6e-57 195.2 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CoA_binding_2 PF13380.6 gi|313126546|ref|YP_004036816.1| - 1.1e-36 125.8 0.0 1.3e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|313126546|ref|YP_004036816.1| - 0.00011 22.9 0.0 0.00016 22.3 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.17 gi|313126546|ref|YP_004036816.1| - 0.021 14.6 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF835 PF05763.12 gi|313126547|ref|YP_004036817.1| - 1.1e-05 25.1 0.1 1.5e-05 24.8 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF835) ATPase PF06745.13 gi|313126547|ref|YP_004036817.1| - 4.1e-05 23.0 0.0 0.00014 21.3 0.0 1.7 1 1 0 1 1 1 1 KaiC Peptidase_C28 PF05408.11 gi|313126547|ref|YP_004036817.1| - 0.0064 16.2 0.0 0.013 15.2 0.0 1.6 2 0 0 2 2 2 1 Foot-and-mouth virus L-proteinase AAA_35 PF14516.6 gi|313126547|ref|YP_004036817.1| - 0.049 12.5 0.0 0.21 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain UbiA PF01040.18 gi|313126548|ref|YP_004036818.1| - 3.1e-47 161.0 18.0 3.8e-47 160.7 18.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1405 PF07187.11 gi|313126549|ref|YP_004036819.1| - 3.3e-51 173.4 12.0 4.3e-51 173.0 12.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) UPF0016 PF01169.19 gi|313126550|ref|YP_004036820.1| - 1.4e-29 102.2 35.1 2.5e-16 59.7 9.2 3.0 3 0 0 3 3 3 2 Uncharacterized protein family UPF0016 Fe_dep_repress PF01325.19 gi|313126551|ref|YP_004036821.1| - 0.00019 21.6 0.0 0.00025 21.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|313126551|ref|YP_004036821.1| - 0.03 14.6 0.0 0.034 14.4 0.0 1.1 1 0 0 1 1 1 0 FeoA domain SAM_adeno_trans PF01887.16 gi|313126554|ref|YP_004036824.1| - 4.9e-75 252.0 2.7 5.5e-75 251.8 2.7 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase ABC_tran PF00005.27 gi|313126555|ref|YP_004036825.1| - 3.9e-35 121.3 0.0 6.8e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|313126555|ref|YP_004036825.1| - 4.7e-10 39.5 0.3 4.7e-10 39.5 0.3 3.2 3 1 1 4 4 3 1 TOBE domain AAA_21 PF13304.6 gi|313126555|ref|YP_004036825.1| - 3.3e-08 33.7 0.0 0.0003 20.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|313126555|ref|YP_004036825.1| - 7.1e-05 23.2 0.5 0.0015 19.0 0.5 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|313126555|ref|YP_004036825.1| - 0.00023 20.7 0.0 0.0096 15.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313126555|ref|YP_004036825.1| - 0.0015 18.9 0.1 0.015 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313126555|ref|YP_004036825.1| - 0.0038 17.5 0.5 0.015 15.6 0.5 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|313126555|ref|YP_004036825.1| - 0.0092 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain CysA_C_terminal PF17850.1 gi|313126555|ref|YP_004036825.1| - 0.025 15.2 0.1 0.21 12.2 0.0 2.5 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AAA_30 PF13604.6 gi|313126555|ref|YP_004036825.1| - 0.031 14.0 0.3 0.15 11.7 0.2 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|313126555|ref|YP_004036825.1| - 0.035 13.4 0.3 0.1 11.9 0.0 1.8 3 0 0 3 3 3 0 Zeta toxin AAA_25 PF13481.6 gi|313126555|ref|YP_004036825.1| - 0.063 12.9 1.9 0.16 11.6 0.5 2.4 2 1 0 2 2 2 0 AAA domain Fimbrial_PilY2 PF14481.6 gi|313126555|ref|YP_004036825.1| - 0.066 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 TOBE PF03459.17 gi|313126555|ref|YP_004036825.1| - 0.074 13.4 1.1 0.16 12.3 0.1 2.1 2 0 0 2 2 1 0 TOBE domain AAA_33 PF13671.6 gi|313126555|ref|YP_004036825.1| - 0.096 12.8 0.3 0.28 11.4 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313126555|ref|YP_004036825.1| - 0.1 12.4 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|313126555|ref|YP_004036825.1| - 0.11 12.5 0.0 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Ribosomal_S17 PF00366.20 gi|313126555|ref|YP_004036825.1| - 0.13 12.4 0.1 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S17 MatE PF01554.18 gi|313126556|ref|YP_004036826.1| - 1.8e-46 157.7 25.5 1e-23 83.8 9.9 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|313126556|ref|YP_004036826.1| - 7.4e-07 29.3 4.8 7.4e-07 29.3 4.8 4.4 2 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF2583 PF10762.9 gi|313126557|ref|YP_004036827.1| - 2.8 8.4 4.7 2.4 8.6 0.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2583) COX1 PF00115.20 gi|313126558|ref|YP_004036828.1| - 1.2e-141 472.5 54.2 1.6e-141 472.1 54.2 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I BtpA PF03437.15 gi|313126559|ref|YP_004036829.1| - 1.9e-85 286.4 4.9 2.2e-85 286.2 4.9 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|313126559|ref|YP_004036829.1| - 0.0031 16.4 0.8 0.0073 15.2 0.6 1.8 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|313126559|ref|YP_004036829.1| - 0.028 13.9 5.8 0.08 12.4 0.6 2.8 2 1 1 3 3 3 0 PcrB family Asparaginase_C PF17763.1 gi|313126559|ref|YP_004036829.1| - 0.17 12.1 3.1 0.7 10.1 3.0 2.3 1 1 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain Pyr_redox_2 PF07992.14 gi|313126560|ref|YP_004036830.1| - 2.6e-30 105.7 2.1 3.7e-30 105.2 2.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313126560|ref|YP_004036830.1| - 9.2e-13 48.6 2.0 9.7e-10 38.9 0.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|313126560|ref|YP_004036830.1| - 5.8e-06 26.4 1.1 0.91 9.5 0.0 3.4 2 1 0 3 3 3 3 FAD-NAD(P)-binding DAO PF01266.24 gi|313126560|ref|YP_004036830.1| - 1e-05 25.3 5.7 0.63 9.6 0.2 4.1 4 1 0 4 4 4 3 FAD dependent oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|313126560|ref|YP_004036830.1| - 0.0011 19.2 0.5 0.27 11.5 0.0 2.6 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain NAD_binding_8 PF13450.6 gi|313126560|ref|YP_004036830.1| - 0.0043 17.3 3.2 2.2 8.6 0.0 3.6 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Methyltransf_24 PF13578.6 gi|313126560|ref|YP_004036830.1| - 0.0098 16.9 2.0 0.19 12.7 0.1 2.8 2 1 0 2 2 2 1 Methyltransferase domain TrkA_N PF02254.18 gi|313126560|ref|YP_004036830.1| - 0.053 13.8 0.2 3.1 8.1 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|313126560|ref|YP_004036830.1| - 0.12 11.9 0.2 0.42 10.1 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MDD_C PF18376.1 gi|313126561|ref|YP_004036831.1| - 1.6e-07 31.3 0.1 2.5e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|313126561|ref|YP_004036831.1| - 1.9e-06 28.0 1.9 0.00022 21.4 0.4 2.5 2 0 0 2 2 2 2 GHMP kinases N terminal domain TarH PF02203.15 gi|313126561|ref|YP_004036831.1| - 0.0052 16.7 0.9 0.0091 15.9 0.9 1.4 1 0 0 1 1 1 1 Tar ligand binding domain homologue Polyketide_cyc2 PF10604.9 gi|313126563|ref|YP_004036833.1| - 2.5e-12 47.3 4.4 3.1e-12 47.0 4.4 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|313126563|ref|YP_004036833.1| - 0.0013 19.0 0.2 0.0018 18.5 0.2 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport YqjK PF13997.6 gi|313126563|ref|YP_004036833.1| - 0.03 14.6 0.4 0.054 13.7 0.0 1.6 2 0 0 2 2 2 0 YqjK-like protein Flavin_Reduct PF01613.18 gi|313126564|ref|YP_004036834.1| - 3.8e-23 82.3 0.4 5e-23 81.8 0.4 1.1 1 0 0 1 1 1 1 Flavin reductase like domain HTH_1 PF00126.27 gi|313126565|ref|YP_004036835.1| - 0.00025 20.9 0.1 0.00065 19.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|313126565|ref|YP_004036835.1| - 0.0013 18.6 0.1 0.0045 16.9 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|313126565|ref|YP_004036835.1| - 0.013 15.6 0.0 0.028 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|313126565|ref|YP_004036835.1| - 0.014 15.3 0.1 0.067 13.1 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|313126565|ref|YP_004036835.1| - 0.043 13.7 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|313126565|ref|YP_004036835.1| - 0.047 13.8 0.0 0.072 13.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation TrmB PF01978.19 gi|313126565|ref|YP_004036835.1| - 0.096 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|313126565|ref|YP_004036835.1| - 0.19 11.9 0.0 5 7.3 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DICT PF10069.9 gi|313126567|ref|YP_004036837.1| - 6.3e-14 51.9 0.0 9e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system NPCBM_assoc PF10633.9 gi|313126568|ref|YP_004036838.1| - 8.1e-17 61.3 13.7 0.00063 20.0 0.0 6.9 6 1 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|313126568|ref|YP_004036838.1| - 1.1e-12 48.0 17.6 0.00055 20.2 0.3 5.2 5 0 0 5 5 5 4 CARDB DUF4832 PF16116.5 gi|313126568|ref|YP_004036838.1| - 1.8e-07 31.3 0.7 0.99 9.2 0.0 4.1 3 1 1 4 4 4 3 Domain of unknown function (DUF4832) DUF11 PF01345.18 gi|313126568|ref|YP_004036838.1| - 3.9e-07 30.3 27.5 0.14 12.5 0.1 6.9 3 2 2 5 5 5 3 Domain of unknown function DUF11 Transglut_C PF00927.22 gi|313126568|ref|YP_004036838.1| - 1.6e-05 25.0 0.3 2.3 8.4 0.0 4.4 5 0 0 5 5 5 1 Transglutaminase family, C-terminal ig like domain PHTB1_C PF14728.6 gi|313126568|ref|YP_004036838.1| - 9e-05 21.7 0.8 0.012 14.7 0.0 2.6 3 0 0 3 3 3 1 PTHB1 C-terminus TRAP_alpha PF03896.16 gi|313126568|ref|YP_004036838.1| - 0.0012 18.2 0.8 3.7 6.7 0.0 3.9 4 0 0 4 4 4 1 Translocon-associated protein (TRAP), alpha subunit PEP-utilizers PF00391.23 gi|313126568|ref|YP_004036838.1| - 0.0029 17.3 0.1 0.046 13.5 0.0 2.5 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain MG2 PF01835.19 gi|313126568|ref|YP_004036838.1| - 0.0033 17.9 2.7 7 7.2 0.1 4.5 4 1 0 4 4 4 1 MG2 domain DUF4625 PF15418.6 gi|313126568|ref|YP_004036838.1| - 0.0057 16.9 0.3 10 6.4 0.0 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) Fn3-like PF14310.6 gi|313126568|ref|YP_004036838.1| - 0.0073 16.4 0.1 9.5 6.4 0.0 4.4 5 0 0 5 5 4 1 Fibronectin type III-like domain DUF1081 PF06448.11 gi|313126568|ref|YP_004036838.1| - 0.061 13.7 0.3 16 5.9 0.1 3.7 2 1 1 3 3 3 0 Domain of Unknown Function (DUF1081) DUF756 PF05506.12 gi|313126568|ref|YP_004036838.1| - 0.071 14.0 4.4 0.91 10.5 0.5 4.2 3 2 0 3 3 2 0 Domain of unknown function (DUF756) DUF4469 PF14734.6 gi|313126568|ref|YP_004036838.1| - 0.092 12.9 0.1 0.5 10.6 0.1 2.4 2 0 0 2 2 1 0 Domain of unknown function (DUF4469) with IG-like fold FAS_meander PF17951.1 gi|313126568|ref|YP_004036838.1| - 0.19 11.5 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 Fatty acid synthase meander beta sheet domain DUF5305 PF17231.2 gi|313126568|ref|YP_004036838.1| - 0.51 9.7 9.3 4.5 6.6 0.0 4.2 3 1 0 4 4 4 0 Family of unknown function (DUF5305) Neocarzinostat PF00960.18 gi|313126568|ref|YP_004036838.1| - 1.1 9.2 6.0 1.3 9.0 0.6 3.3 3 0 0 3 3 3 0 Neocarzinostatin family Pilin PF00114.19 gi|313126568|ref|YP_004036838.1| - 1.4 9.9 12.2 1.7 9.6 3.6 3.9 1 1 1 3 3 3 0 Pilin (bacterial filament) MMPL PF03176.15 gi|313126569|ref|YP_004036839.1| - 2.5e-38 131.9 22.8 3.5e-19 68.9 7.6 2.4 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|313126569|ref|YP_004036839.1| - 2.7e-17 62.2 21.7 1.2e-09 36.9 7.3 2.3 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|313126569|ref|YP_004036839.1| - 6.3e-12 45.6 8.4 7.8e-08 32.3 0.3 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|313126569|ref|YP_004036839.1| - 0.0006 19.3 25.9 0.019 14.4 12.6 2.6 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.19 gi|313126569|ref|YP_004036839.1| - 0.13 9.9 26.5 0.031 11.9 15.8 2.2 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family TrmB PF01978.19 gi|313126570|ref|YP_004036840.1| - 2.7e-16 59.2 0.1 4.7e-16 58.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313126570|ref|YP_004036840.1| - 3.8e-05 23.4 0.3 0.00015 21.5 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313126570|ref|YP_004036840.1| - 0.0045 16.8 0.1 0.011 15.6 0.1 1.7 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|313126570|ref|YP_004036840.1| - 0.0065 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) PLDc_2 PF13091.6 gi|313126570|ref|YP_004036840.1| - 0.011 15.6 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 PLD-like domain Regulator_TrmB PF11495.8 gi|313126570|ref|YP_004036840.1| - 0.017 14.4 0.1 0.023 13.9 0.1 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Cdc6_C PF09079.11 gi|313126570|ref|YP_004036840.1| - 0.017 15.1 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_20 PF12840.7 gi|313126570|ref|YP_004036840.1| - 0.024 14.7 0.7 0.047 13.8 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF424 PF04242.13 gi|313126570|ref|YP_004036840.1| - 0.042 14.1 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF424) HTH_29 PF13551.6 gi|313126570|ref|YP_004036840.1| - 0.085 12.9 0.0 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix Inositol_P PF00459.25 gi|313126571|ref|YP_004036841.1| - 4.3e-47 160.9 2.2 5.4e-47 160.6 2.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family MrpF_PhaF PF04066.13 gi|313126572|ref|YP_004036842.1| - 0.01 16.2 1.8 0.016 15.6 1.7 1.4 1 1 0 1 1 1 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Acylphosphatase PF00708.18 gi|313126573|ref|YP_004036843.1| - 1.4e-25 89.5 0.1 1.6e-25 89.3 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase PGM_PMM_I PF02878.16 gi|313126574|ref|YP_004036844.1| - 3.5e-34 117.5 0.0 7e-34 116.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|313126574|ref|YP_004036844.1| - 4.7e-18 65.7 0.2 4.7e-18 65.7 0.2 2.7 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|313126574|ref|YP_004036844.1| - 4.2e-12 46.1 0.1 1.7e-11 44.1 0.1 2.1 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|313126574|ref|YP_004036844.1| - 0.00078 19.6 0.0 0.0021 18.3 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Bmp PF02608.14 gi|313126575|ref|YP_004036845.1| - 1.5e-63 214.6 4.9 4.4e-63 213.1 4.9 1.6 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|313126575|ref|YP_004036845.1| - 2.6e-08 33.8 1.7 4.4e-08 33.0 1.7 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|313126575|ref|YP_004036845.1| - 0.00068 19.4 1.2 0.00068 19.4 1.2 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|313126576|ref|YP_004036846.1| - 3.8e-45 153.8 0.0 1e-28 100.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|313126576|ref|YP_004036846.1| - 8.7e-10 38.9 0.0 0.00015 21.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313126576|ref|YP_004036846.1| - 0.00011 21.9 0.5 0.028 14.1 0.0 3.0 4 0 0 4 4 4 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|313126576|ref|YP_004036846.1| - 0.00044 20.1 0.0 0.86 9.2 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain Bac_DnaA PF00308.18 gi|313126576|ref|YP_004036846.1| - 0.00079 19.3 1.8 0.0021 18.0 0.1 2.4 3 0 0 3 3 3 1 Bacterial dnaA protein AAA_30 PF13604.6 gi|313126576|ref|YP_004036846.1| - 0.0019 17.9 0.2 0.04 13.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|313126576|ref|YP_004036846.1| - 0.0032 16.9 0.1 4 6.8 0.0 2.9 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|313126576|ref|YP_004036846.1| - 0.0054 16.7 0.1 0.1 12.5 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|313126576|ref|YP_004036846.1| - 0.014 15.9 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|313126576|ref|YP_004036846.1| - 0.066 12.0 0.2 0.44 9.3 0.0 1.9 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_27 PF13514.6 gi|313126576|ref|YP_004036846.1| - 0.071 12.7 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|313126576|ref|YP_004036846.1| - 0.076 13.4 0.0 0.25 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|313126577|ref|YP_004036847.1| - 1.3e-40 139.2 37.3 1.6e-40 139.0 29.9 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|313126578|ref|YP_004036848.1| - 1.8e-34 119.1 31.1 2.8e-34 118.5 31.1 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component TcdA_TcdB_pore PF12920.7 gi|313126579|ref|YP_004036849.1| - 0.93 7.7 3.1 1.2 7.3 3.1 1.1 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Ribosomal_S30AE PF02482.19 gi|313126580|ref|YP_004036850.1| - 0.065 14.0 0.3 0.073 13.9 0.3 1.1 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein Trp_halogenase PF04820.14 gi|313126581|ref|YP_004036851.1| - 1.3e-15 57.2 1.8 2.5e-11 43.1 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|313126581|ref|YP_004036851.1| - 6.1e-12 45.3 6.1 3.7e-06 26.3 3.9 2.4 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|313126581|ref|YP_004036851.1| - 4.6e-10 39.9 1.4 0.00093 19.7 0.6 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|313126581|ref|YP_004036851.1| - 5.2e-10 39.1 2.9 3.2e-09 36.5 2.9 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|313126581|ref|YP_004036851.1| - 9.4e-10 38.4 7.2 2.1e-05 24.1 3.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|313126581|ref|YP_004036851.1| - 7.7e-09 35.6 8.6 0.00041 20.0 1.3 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|313126581|ref|YP_004036851.1| - 6.8e-08 32.0 0.3 1.4e-07 31.0 0.3 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|313126581|ref|YP_004036851.1| - 1.9e-07 30.6 1.2 7.7e-07 28.6 0.3 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 gi|313126581|ref|YP_004036851.1| - 3e-07 30.0 7.5 7.3e-05 22.1 0.2 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313126581|ref|YP_004036851.1| - 7.1e-06 25.0 1.1 0.00019 20.2 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|313126581|ref|YP_004036851.1| - 2.6e-05 24.4 0.9 2.6e-05 24.4 0.9 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|313126581|ref|YP_004036851.1| - 3.3e-05 23.1 1.6 0.0071 15.4 0.4 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|313126581|ref|YP_004036851.1| - 0.0066 15.7 0.5 0.027 13.7 0.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|313126581|ref|YP_004036851.1| - 0.0094 15.9 0.2 0.016 15.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313126581|ref|YP_004036851.1| - 0.021 14.5 0.3 0.04 13.6 0.3 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|313126581|ref|YP_004036851.1| - 0.04 13.2 0.6 0.04 13.2 0.6 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FBPase PF00316.20 gi|313126581|ref|YP_004036851.1| - 0.04 13.4 0.1 0.088 12.3 0.1 1.6 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain NAD_binding_9 PF13454.6 gi|313126581|ref|YP_004036851.1| - 0.067 13.2 1.2 0.62 10.0 0.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Shikimate_DH PF01488.20 gi|313126581|ref|YP_004036851.1| - 0.081 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GDI PF00996.18 gi|313126581|ref|YP_004036851.1| - 0.1 11.1 0.5 1.3 7.5 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor Ferredoxin_N PF16947.5 gi|313126581|ref|YP_004036851.1| - 0.11 12.7 0.5 1.1 9.4 0.2 2.4 2 0 0 2 2 2 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding ThiF PF00899.21 gi|313126581|ref|YP_004036851.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 ThiF family Peptidase_M20 PF01546.28 gi|313126582|ref|YP_004036852.1| - 1.5e-23 83.6 5.1 2.3e-23 83.0 5.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|313126582|ref|YP_004036852.1| - 1.1e-13 51.1 0.7 2.5e-13 49.9 0.7 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Biotin_carb_N PF00289.22 gi|313126582|ref|YP_004036852.1| - 0.054 14.0 0.1 47 4.6 0.0 3.2 3 0 0 3 3 3 0 Biotin carboxylase, N-terminal domain Na_H_antiporter PF03553.14 gi|313126583|ref|YP_004036853.1| - 5.9e-38 130.8 45.4 3.2e-22 79.1 18.3 2.3 1 1 1 2 2 2 2 Na+/H+ antiporter family Ribosomal_S10 PF00338.22 gi|313126585|ref|YP_004036855.1| - 1.1e-08 35.2 0.0 1.4e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.28 gi|313126586|ref|YP_004036856.1| - 5.7e-18 65.2 0.3 6.8e-18 65.0 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|313126586|ref|YP_004036856.1| - 0.0029 18.0 0.0 0.0037 17.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain PaaX PF07848.12 gi|313126588|ref|YP_004036858.1| - 0.075 13.3 0.4 0.24 11.7 0.3 1.9 2 0 0 2 2 2 0 PaaX-like protein TrmB PF01978.19 gi|313126589|ref|YP_004036859.1| - 0.049 13.5 0.2 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4817 PF16087.5 gi|313126589|ref|YP_004036859.1| - 0.072 12.9 0.1 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) LexA_DNA_bind PF01726.16 gi|313126589|ref|YP_004036859.1| - 0.093 12.5 0.0 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain ECH_1 PF00378.20 gi|313126590|ref|YP_004036860.1| - 5.5e-65 219.2 0.1 6.1e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313126590|ref|YP_004036860.1| - 3.4e-34 118.8 0.1 5.6e-34 118.1 0.1 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|313126590|ref|YP_004036860.1| - 0.0013 17.8 0.0 0.0021 17.1 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase MCPsignal PF00015.21 gi|313126591|ref|YP_004036861.1| - 2.1e-39 135.1 55.1 6.4e-37 127.0 28.2 3.3 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.7 gi|313126591|ref|YP_004036861.1| - 2.8e-11 43.6 0.2 1.8e-10 41.0 0.0 2.4 2 1 1 3 3 3 1 PAS domain PAS PF00989.25 gi|313126591|ref|YP_004036861.1| - 3e-10 40.1 1.1 2.3e-09 37.3 0.0 2.8 3 0 0 3 3 2 1 PAS fold PAS_4 PF08448.10 gi|313126591|ref|YP_004036861.1| - 3.2e-08 33.8 0.1 3.2e-08 33.8 0.1 2.6 3 0 0 3 3 2 1 PAS fold PAS_10 PF13596.6 gi|313126591|ref|YP_004036861.1| - 4.6e-05 23.9 5.8 0.00023 21.7 0.0 3.5 3 1 0 3 3 3 1 PAS domain BLOC1_2 PF10046.9 gi|313126591|ref|YP_004036861.1| - 0.00054 20.2 28.6 0.51 10.7 0.9 4.7 2 2 1 4 4 4 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 PAS_8 PF13188.7 gi|313126591|ref|YP_004036861.1| - 0.007 16.4 0.0 0.021 14.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain DUF948 PF06103.11 gi|313126591|ref|YP_004036861.1| - 0.0093 16.2 37.8 0.16 12.3 4.1 5.6 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|313126591|ref|YP_004036861.1| - 0.017 15.2 31.4 0.38 10.8 4.4 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) YkyA PF10368.9 gi|313126591|ref|YP_004036861.1| - 0.047 13.4 36.5 0.11 12.2 4.2 3.6 1 1 3 4 4 4 0 Putative cell-wall binding lipoprotein Seryl_tRNA_N PF02403.22 gi|313126591|ref|YP_004036861.1| - 0.055 13.7 26.5 0.19 12.0 5.4 4.3 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain PAS_3 PF08447.12 gi|313126591|ref|YP_004036861.1| - 0.075 13.3 0.0 0.24 11.7 0.0 2.0 2 0 0 2 2 1 0 PAS fold ApoLp-III PF07464.11 gi|313126591|ref|YP_004036861.1| - 0.12 12.5 33.8 0.026 14.6 9.1 3.3 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF745 PF05335.13 gi|313126591|ref|YP_004036861.1| - 0.15 11.8 32.1 1 9.1 12.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF745) KxDL PF10241.9 gi|313126591|ref|YP_004036861.1| - 0.21 11.9 8.1 1.2 9.5 0.4 4.2 2 2 3 5 5 5 0 Uncharacterized conserved protein COG5 PF10392.9 gi|313126591|ref|YP_004036861.1| - 0.62 10.2 10.2 13 6.0 0.3 3.9 2 2 1 3 3 3 0 Golgi transport complex subunit 5 GLE1 PF07817.13 gi|313126591|ref|YP_004036861.1| - 0.86 8.8 5.9 2.3 7.4 0.9 2.7 2 1 0 2 2 2 0 GLE1-like protein Syntaxin_2 PF14523.6 gi|313126591|ref|YP_004036861.1| - 1.1 9.7 14.4 24 5.4 1.4 4.4 1 1 2 3 3 3 0 Syntaxin-like protein FUSC PF04632.12 gi|313126591|ref|YP_004036861.1| - 1.2 7.6 17.6 0.089 11.3 10.7 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein family Atg14 PF10186.9 gi|313126591|ref|YP_004036861.1| - 1.3 8.0 13.5 1.5 7.8 5.0 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Laminin_II PF06009.12 gi|313126591|ref|YP_004036861.1| - 2.2 8.3 41.2 0.3 11.1 4.5 4.8 1 1 4 5 5 5 0 Laminin Domain II Noelin-1 PF12308.8 gi|313126591|ref|YP_004036861.1| - 3.4 7.7 11.2 1.4 8.9 0.7 4.1 3 2 2 5 5 5 0 Neurogenesis glycoprotein BAR_3 PF16746.5 gi|313126591|ref|YP_004036861.1| - 3.9 7.1 8.6 1.9 8.1 0.4 2.8 2 1 1 3 3 3 0 BAR domain of APPL family Goodbye PF17109.5 gi|313126591|ref|YP_004036861.1| - 6 7.3 14.3 15 6.1 0.9 4.3 2 2 1 3 3 3 0 fungal STAND N-terminal Goodbye domain Rx_N PF18052.1 gi|313126591|ref|YP_004036861.1| - 6.3 7.1 19.2 21 5.5 6.6 4.2 1 1 0 2 2 2 0 Rx N-terminal domain AAA_13 PF13166.6 gi|313126591|ref|YP_004036861.1| - 7.8 5.0 29.6 1.4 7.5 5.3 3.0 2 1 1 3 3 3 0 AAA domain Vps54_N PF10475.9 gi|313126591|ref|YP_004036861.1| - 8.9 5.5 10.8 5.4 6.2 1.4 2.5 2 1 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex Syntaxin-6_N PF09177.11 gi|313126591|ref|YP_004036861.1| - 9.3 6.9 26.5 4.5 7.9 3.6 4.5 2 2 2 4 4 4 0 Syntaxin 6, N-terminal TFIIS_C PF01096.18 gi|313126593|ref|YP_004036863.1| - 5e-18 64.7 4.1 5e-18 64.7 4.1 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.11 gi|313126593|ref|YP_004036863.1| - 3.6e-07 30.0 8.8 0.00075 19.4 1.3 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|313126593|ref|YP_004036863.1| - 1.6e-06 27.9 0.6 1.6e-06 27.9 0.6 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|313126593|ref|YP_004036863.1| - 6.9e-05 22.1 7.9 0.02 14.3 1.0 3.0 3 0 0 3 3 3 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313126593|ref|YP_004036863.1| - 9.1e-05 22.4 6.8 0.0014 18.6 1.8 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|313126593|ref|YP_004036863.1| - 0.0023 17.9 9.4 2.7 8.0 0.0 4.1 4 0 0 4 4 4 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|313126593|ref|YP_004036863.1| - 0.006 16.6 10.3 10 6.2 10.3 2.8 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|313126593|ref|YP_004036863.1| - 0.0066 16.6 6.5 2.9 8.2 0.0 4.0 4 0 0 4 4 4 1 C4-type zinc ribbon domain Prok-RING_1 PF14446.6 gi|313126593|ref|YP_004036863.1| - 0.0075 16.2 6.0 0.082 12.8 0.3 2.9 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|313126593|ref|YP_004036863.1| - 0.019 14.5 8.9 2 8.1 0.1 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger PHF5 PF03660.14 gi|313126593|ref|YP_004036863.1| - 0.033 14.4 4.2 2.4 8.4 0.2 2.1 1 1 1 2 2 2 0 PHF5-like protein zf-UBP PF02148.19 gi|313126593|ref|YP_004036863.1| - 0.044 14.1 5.2 0.18 12.1 0.4 2.3 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein TF_Zn_Ribbon PF08271.12 gi|313126593|ref|YP_004036863.1| - 0.045 13.3 1.5 0.045 13.3 1.5 3.6 2 2 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|313126593|ref|YP_004036863.1| - 0.046 13.4 11.4 0.076 12.7 0.1 3.9 3 1 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37ae PF01780.19 gi|313126593|ref|YP_004036863.1| - 0.054 13.6 8.5 0.32 11.1 1.4 2.8 1 1 1 2 2 2 0 Ribosomal L37ae protein family zinc_ribbon_4 PF13717.6 gi|313126593|ref|YP_004036863.1| - 0.077 12.9 9.8 0.15 12.0 0.1 3.5 3 1 0 3 3 3 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|313126593|ref|YP_004036863.1| - 0.081 13.2 1.4 16 5.9 0.0 2.8 2 1 0 2 2 2 0 Ribosomal L32p protein family UPF0547 PF10571.9 gi|313126593|ref|YP_004036863.1| - 0.12 12.5 0.2 0.12 12.5 0.2 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|313126593|ref|YP_004036863.1| - 0.14 11.9 13.8 2.1 8.1 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain TackOD1 PF18551.1 gi|313126593|ref|YP_004036863.1| - 0.27 10.9 7.0 3.6 7.2 1.6 2.2 1 1 0 2 2 2 0 Thaumarchaeal output domain 1 Nudix_N_2 PF14803.6 gi|313126593|ref|YP_004036863.1| - 0.32 10.9 10.9 8 6.5 0.1 3.6 3 1 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|313126593|ref|YP_004036863.1| - 0.33 11.1 12.6 0.51 10.5 0.8 4.0 3 1 0 4 4 4 0 Zinc ribbon domain DUF2387 PF09526.10 gi|313126593|ref|YP_004036863.1| - 0.36 11.0 8.8 1.2 9.4 3.6 2.5 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) HypA PF01155.19 gi|313126593|ref|YP_004036863.1| - 0.77 9.8 8.9 1.6e+02 2.3 9.0 2.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|313126593|ref|YP_004036863.1| - 1 9.4 9.4 2.4 8.2 0.5 2.5 2 1 0 2 2 2 0 zinc-ribbons DUF3268 PF11672.8 gi|313126593|ref|YP_004036863.1| - 1.5 9.2 6.2 0.31 11.4 0.5 2.2 2 1 0 2 2 2 0 zinc-finger-containing domain zinc_ribbon_2 PF13240.6 gi|313126593|ref|YP_004036863.1| - 1.5 8.6 13.5 0.92 9.3 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain HalOD2 PF18547.1 gi|313126593|ref|YP_004036863.1| - 2.2 8.3 14.6 1.3 9.0 0.8 3.8 3 1 1 4 4 4 0 Halobacterial output domain 2 zf-ISL3 PF14690.6 gi|313126593|ref|YP_004036863.1| - 3.8 8.3 10.5 8.2 7.2 0.6 3.5 2 2 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IBR PF01485.21 gi|313126593|ref|YP_004036863.1| - 3.8 7.8 13.1 3.3e+03 -1.6 13.1 3.0 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zf-RRN7 PF11781.8 gi|313126593|ref|YP_004036863.1| - 9.5 6.0 14.2 64 3.4 0.1 4.1 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-IS66 PF13005.7 gi|313126593|ref|YP_004036863.1| - 10 6.6 13.2 4.5 7.8 0.1 3.7 3 1 1 4 4 3 0 zinc-finger binding domain of transposase IS66 GCD14 PF08704.10 gi|313126595|ref|YP_004036865.1| - 1.6e-17 64.0 0.0 2.7e-14 53.4 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|313126595|ref|YP_004036865.1| - 1.4e-09 37.9 0.0 2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|313126595|ref|YP_004036865.1| - 8.8e-08 31.9 0.0 1.6e-07 31.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|313126595|ref|YP_004036865.1| - 9.8e-08 32.6 0.3 2.5e-07 31.3 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|313126595|ref|YP_004036865.1| - 4.3e-07 30.9 0.1 9.6e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|313126595|ref|YP_004036865.1| - 6.8e-06 25.7 0.0 1.1e-05 25.1 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|313126595|ref|YP_004036865.1| - 1.5e-05 25.5 0.1 3.7e-05 24.3 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|313126595|ref|YP_004036865.1| - 1.6e-05 24.8 0.0 2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.17 gi|313126595|ref|YP_004036865.1| - 1.8e-05 24.0 0.0 2.2e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|313126595|ref|YP_004036865.1| - 1.9e-05 23.8 0.0 2.5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 gi|313126595|ref|YP_004036865.1| - 0.00072 19.3 0.0 0.0012 18.6 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|313126595|ref|YP_004036865.1| - 0.0013 18.6 0.0 0.0028 17.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313126595|ref|YP_004036865.1| - 0.013 16.2 0.0 0.026 15.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|313126595|ref|YP_004036865.1| - 0.014 15.3 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|313126595|ref|YP_004036865.1| - 0.029 14.3 0.1 0.047 13.7 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Met_10 PF02475.16 gi|313126595|ref|YP_004036865.1| - 0.04 13.7 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|313126595|ref|YP_004036865.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase NAC PF01849.18 gi|313126596|ref|YP_004036866.1| - 1.3e-17 63.5 0.8 1.9e-17 63.0 0.8 1.2 1 0 0 1 1 1 1 NAC domain CUE PF02845.16 gi|313126596|ref|YP_004036866.1| - 0.025 14.3 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 CUE domain UBA PF00627.31 gi|313126596|ref|YP_004036866.1| - 0.28 11.1 0.2 0.28 11.1 0.2 1.9 2 0 0 2 2 2 0 UBA/TS-N domain Methyltransf_3 PF01596.17 gi|313126597|ref|YP_004036867.1| - 1.1e-11 44.3 0.0 1.4e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|313126597|ref|YP_004036867.1| - 5e-10 40.3 0.1 9.1e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313126597|ref|YP_004036867.1| - 1.8e-06 28.6 0.0 3.2e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|313126597|ref|YP_004036867.1| - 0.033 13.7 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|313126597|ref|YP_004036867.1| - 0.1 12.3 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MM_CoA_mutase PF01642.22 gi|313126598|ref|YP_004036868.1| - 1.2e-225 750.0 1.6 1.4e-225 749.7 1.6 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase GIT_SHD PF08518.11 gi|313126598|ref|YP_004036868.1| - 0.048 13.3 0.1 0.2 11.3 0.1 2.1 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT DUF2530 PF10745.9 gi|313126599|ref|YP_004036869.1| - 0.016 15.4 3.0 0.023 14.9 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) OrfB_Zn_ribbon PF07282.11 gi|313126600|ref|YP_004036870.1| - 4.4e-24 84.2 2.3 8.8e-24 83.2 2.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313126600|ref|YP_004036870.1| - 2.7e-21 76.0 0.2 6.9e-21 74.7 0.0 1.8 2 0 0 2 2 2 1 Probable transposase C1_2 PF03107.16 gi|313126600|ref|YP_004036870.1| - 0.0059 16.9 1.9 0.016 15.5 1.9 1.7 1 0 0 1 1 1 1 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|313126600|ref|YP_004036870.1| - 0.1 12.6 3.8 0.23 11.5 3.8 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|313126600|ref|YP_004036870.1| - 0.13 12.4 2.9 0.096 12.8 0.7 1.9 2 0 0 2 2 2 0 Ribosomal L37ae protein family YbjQ_1 PF01906.17 gi|313126602|ref|YP_004036872.1| - 7.3e-38 129.4 2.9 8.9e-38 129.1 2.9 1.1 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|313126602|ref|YP_004036872.1| - 0.001 19.5 0.2 0.1 13.0 0.1 2.2 1 1 1 2 2 2 2 Selenium binding protein DUF4156 PF13698.6 gi|313126602|ref|YP_004036872.1| - 0.032 14.6 0.3 0.058 13.7 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Glyoxalase_4 PF13669.6 gi|313126603|ref|YP_004036873.1| - 6.4e-15 55.4 0.1 7.8e-15 55.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|313126603|ref|YP_004036873.1| - 4.6e-07 30.1 1.3 5.1e-07 30.0 1.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|313126603|ref|YP_004036873.1| - 5.6e-05 23.3 0.4 6.8e-05 23.1 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|313126603|ref|YP_004036873.1| - 0.0035 18.1 0.2 0.0044 17.8 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Spore_permease PF03845.13 gi|313126604|ref|YP_004036874.1| - 0.015 14.1 1.9 0.017 14.0 1.9 1.0 1 0 0 1 1 1 0 Spore germination protein Pga1 PF10333.9 gi|313126604|ref|YP_004036874.1| - 0.31 10.9 2.2 0.38 10.6 2.2 1.1 1 0 0 1 1 1 0 GPI-Mannosyltransferase II co-activator AMP-binding PF00501.28 gi|313126605|ref|YP_004036875.1| - 1.4e-94 317.1 0.3 1.8e-94 316.8 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313126605|ref|YP_004036875.1| - 5.1e-16 59.4 0.1 1.7e-15 57.8 0.1 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|313126606|ref|YP_004036876.1| - 1.6e-95 320.2 0.0 2.1e-95 319.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313126606|ref|YP_004036876.1| - 3.3e-23 82.5 0.4 7.8e-23 81.2 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|313126607|ref|YP_004036877.1| - 8.3e-43 146.2 1.6 1e-42 145.9 0.8 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313126607|ref|YP_004036877.1| - 5.5e-28 97.0 0.2 1.5e-27 95.6 0.2 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|313126607|ref|YP_004036877.1| - 4.6e-26 91.7 0.3 1.1e-25 90.4 0.3 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|313126607|ref|YP_004036877.1| - 9.3e-19 68.0 0.3 1.5e-18 67.4 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|313126607|ref|YP_004036877.1| - 2.5e-05 24.1 0.7 0.00012 21.9 0.7 2.0 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Peptidase_M1 PF01433.20 gi|313126608|ref|YP_004036878.1| - 0.0015 18.1 0.0 0.0031 17.1 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M1 domain Peptidase_M61 PF05299.12 gi|313126608|ref|YP_004036878.1| - 0.013 15.8 1.6 0.29 11.5 0.1 2.5 1 1 1 2 2 2 0 M61 glycyl aminopeptidase GRAS PF03514.14 gi|313126608|ref|YP_004036878.1| - 0.024 13.6 0.0 0.036 13.0 0.0 1.1 1 0 0 1 1 1 0 GRAS domain family Lactamase_B PF00753.27 gi|313126609|ref|YP_004036879.1| - 9.9e-16 58.3 6.7 2e-15 57.3 6.7 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|313126609|ref|YP_004036879.1| - 7.5e-09 36.1 0.0 1.3e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|313126609|ref|YP_004036879.1| - 0.00057 19.5 0.5 0.0011 18.6 0.5 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Sulf_transp PF04143.14 gi|313126610|ref|YP_004036880.1| - 1.6e-12 47.6 13.9 2.1e-12 47.3 13.9 1.1 1 0 0 1 1 1 1 Sulphur transport UNC-93 PF05978.16 gi|313126610|ref|YP_004036880.1| - 0.48 10.1 4.8 0.48 10.1 0.6 2.3 2 1 0 2 2 2 0 Ion channel regulatory protein UNC-93 Sulf_transp PF04143.14 gi|313126611|ref|YP_004036881.1| - 2e-08 34.2 5.2 2e-08 34.2 5.2 2.0 1 1 1 2 2 2 2 Sulphur transport TrmB PF01978.19 gi|313126612|ref|YP_004036882.1| - 5.9e-18 64.5 0.0 8e-18 64.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313126612|ref|YP_004036882.1| - 2.7e-06 27.1 0.1 4.5e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|313126612|ref|YP_004036882.1| - 4.6e-06 27.0 0.0 5.9e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|313126612|ref|YP_004036882.1| - 6.4e-05 22.8 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313126612|ref|YP_004036882.1| - 0.00041 20.2 0.0 0.00061 19.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain DUF4777 PF16007.5 gi|313126612|ref|YP_004036882.1| - 0.0006 20.0 0.1 0.0049 17.1 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4777) MarR_2 PF12802.7 gi|313126612|ref|YP_004036882.1| - 0.00076 19.3 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313126612|ref|YP_004036882.1| - 0.0038 17.3 0.1 0.0067 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313126612|ref|YP_004036882.1| - 0.0071 16.8 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain UMPH-1 PF05822.12 gi|313126612|ref|YP_004036882.1| - 0.012 15.1 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_24 PF13412.6 gi|313126612|ref|YP_004036882.1| - 0.015 14.8 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|313126612|ref|YP_004036882.1| - 0.025 14.5 0.3 0.065 13.2 0.3 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family 2OG-Fe_Oxy_2 PF10014.9 gi|313126612|ref|YP_004036882.1| - 0.032 14.0 0.2 0.039 13.8 0.2 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase GntR PF00392.21 gi|313126612|ref|YP_004036882.1| - 0.04 13.6 0.2 0.076 12.7 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Dimerisation PF08100.11 gi|313126612|ref|YP_004036882.1| - 0.047 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain HTH_23 PF13384.6 gi|313126612|ref|YP_004036882.1| - 0.056 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|313126612|ref|YP_004036882.1| - 0.065 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Ribosomal_S25 PF03297.15 gi|313126612|ref|YP_004036882.1| - 0.074 13.3 0.0 0.15 12.3 0.0 1.5 2 0 0 2 2 1 0 S25 ribosomal protein PqqD PF05402.12 gi|313126612|ref|YP_004036882.1| - 0.09 13.1 1.2 3.3 8.1 0.1 2.6 2 1 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) NOB1_Zn_bind PF08772.11 gi|313126613|ref|YP_004036883.1| - 0.0074 16.4 0.9 1.8 8.8 0.1 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|313126613|ref|YP_004036883.1| - 0.037 14.0 0.6 0.058 13.4 0.6 1.3 1 1 0 1 1 1 0 Double zinc ribbon Response_reg PF00072.24 gi|313126614|ref|YP_004036884.1| - 2.5e-17 63.0 0.0 2.9e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain BAT PF15915.5 gi|313126615|ref|YP_004036885.1| - 1.9e-36 125.3 9.9 1.9e-36 125.3 9.9 2.3 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|313126615|ref|YP_004036885.1| - 1.6e-19 69.5 0.0 3.1e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|313126615|ref|YP_004036885.1| - 6.7e-17 61.7 0.9 1.9e-16 60.2 0.9 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|313126615|ref|YP_004036885.1| - 3.1e-09 37.0 7.8 3.1e-09 37.0 7.8 3.5 3 1 1 4 4 4 1 HalX domain GAF_2 PF13185.6 gi|313126615|ref|YP_004036885.1| - 4.7e-08 33.4 2.2 1.8e-07 31.6 0.1 2.8 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|313126615|ref|YP_004036885.1| - 0.00015 22.1 0.0 0.00063 20.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|313126615|ref|YP_004036885.1| - 0.013 15.0 0.0 0.065 12.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 GAF PF01590.26 gi|313126615|ref|YP_004036885.1| - 0.088 13.4 0.0 0.24 12.0 0.0 1.8 1 0 0 1 1 1 0 GAF domain Noelin-1 PF12308.8 gi|313126615|ref|YP_004036885.1| - 0.096 12.7 3.2 0.6 10.1 1.5 2.5 2 0 0 2 2 2 0 Neurogenesis glycoprotein PAS_4 PF08448.10 gi|313126616|ref|YP_004036886.1| - 6.5e-41 139.0 9.8 2.6e-17 63.1 0.1 4.0 5 0 0 5 5 4 3 PAS fold PAS_9 PF13426.7 gi|313126616|ref|YP_004036886.1| - 8.8e-35 119.1 0.1 2.6e-14 53.3 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|313126616|ref|YP_004036886.1| - 1.3e-25 89.6 0.2 2.1e-09 37.4 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|313126616|ref|YP_004036886.1| - 2.6e-17 63.3 0.1 8e-17 61.8 0.0 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|313126616|ref|YP_004036886.1| - 1.2e-16 61.2 0.0 3.5e-16 59.8 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|313126616|ref|YP_004036886.1| - 1.4e-09 38.0 0.1 3.5e-09 36.7 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|313126616|ref|YP_004036886.1| - 3.4e-09 36.5 0.1 0.029 14.4 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF PF01590.26 gi|313126616|ref|YP_004036886.1| - 4.8e-06 27.2 0.0 1.2e-05 26.0 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|313126616|ref|YP_004036886.1| - 1.5e-05 25.2 1.6 0.00044 20.5 0.1 3.1 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.7 gi|313126616|ref|YP_004036886.1| - 0.00022 21.4 0.2 1.5 9.0 0.0 4.7 3 2 1 4 4 4 1 PAS fold PAS_10 PF13596.6 gi|313126616|ref|YP_004036886.1| - 0.0019 18.8 0.0 0.39 11.3 0.0 3.1 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|313126616|ref|YP_004036886.1| - 0.0098 16.2 0.0 0.03 14.6 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|313126616|ref|YP_004036886.1| - 0.01 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HisKA_4TM PF16926.5 gi|313126616|ref|YP_004036886.1| - 0.02 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase UPF0058 PF01893.16 gi|313126617|ref|YP_004036887.1| - 1.8e-10 41.0 0.0 2e-10 40.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 MutS_V PF00488.21 gi|313126618|ref|YP_004036888.1| - 1.6e-07 31.5 0.0 2.9e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_28 PF13521.6 gi|313126618|ref|YP_004036888.1| - 0.0037 17.5 0.4 0.013 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|313126618|ref|YP_004036888.1| - 0.0046 16.8 0.0 0.015 15.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system HHH_5 PF14520.6 gi|313126618|ref|YP_004036888.1| - 0.0051 17.4 1.3 0.036 14.7 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain AAA_14 PF13173.6 gi|313126618|ref|YP_004036888.1| - 0.01 15.9 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|313126618|ref|YP_004036888.1| - 0.016 15.5 0.0 0.035 14.4 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif AAA_23 PF13476.6 gi|313126618|ref|YP_004036888.1| - 0.058 13.9 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313126618|ref|YP_004036888.1| - 0.11 12.2 0.1 0.29 10.9 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Apolipoprotein PF01442.18 gi|313126618|ref|YP_004036888.1| - 0.66 9.8 10.6 0.087 12.7 5.6 2.0 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain OrfB_Zn_ribbon PF07282.11 gi|313126619|ref|YP_004036889.1| - 2.1e-23 82.0 1.6 4.4e-23 81.0 1.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313126619|ref|YP_004036889.1| - 7e-21 74.7 0.0 1.6e-20 73.5 0.0 1.6 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|313126619|ref|YP_004036889.1| - 0.0029 17.9 1.7 0.0077 16.5 1.7 1.7 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|313126619|ref|YP_004036889.1| - 0.077 13.1 1.8 0.16 12.1 0.8 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|313126619|ref|YP_004036889.1| - 0.078 13.0 3.6 0.21 11.6 3.6 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain VCBS PF13517.6 gi|313126621|ref|YP_004036891.1| - 8.7e-23 80.7 14.0 9.7e-09 35.7 0.3 5.3 3 2 2 5 5 5 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella UnbV_ASPIC PF07593.12 gi|313126621|ref|YP_004036891.1| - 1.5e-15 56.9 0.0 4.1e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 ASPIC and UnbV FG-GAP PF01839.23 gi|313126621|ref|YP_004036891.1| - 5.1e-06 26.5 17.9 0.028 14.6 0.1 5.5 6 0 0 6 6 6 3 FG-GAP repeat Itfg2 PF15907.5 gi|313126621|ref|YP_004036891.1| - 0.12 11.4 1.0 16 4.4 0.0 3.5 4 0 0 4 4 4 0 Integrin-alpha FG-GAP repeat-containing protein 2 EF-hand_1 PF00036.32 gi|313126621|ref|YP_004036891.1| - 1.9 8.2 4.7 37 4.2 0.1 3.5 4 0 0 4 4 4 0 EF hand zf-FCS PF06467.14 gi|313126622|ref|YP_004036892.1| - 0.1 12.5 5.3 0.4 10.7 5.3 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Helicase_C_2 PF13307.6 gi|313126623|ref|YP_004036893.1| - 8.6e-28 97.6 0.0 1.7e-27 96.7 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|313126623|ref|YP_004036893.1| - 1.4e-07 31.3 0.0 3.1e-07 30.2 0.0 1.6 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|313126623|ref|YP_004036893.1| - 0.00026 21.1 0.0 0.0054 16.7 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|313126623|ref|YP_004036893.1| - 0.00064 19.2 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein DEAD PF00270.29 gi|313126623|ref|YP_004036893.1| - 0.0033 17.2 0.0 0.64 9.8 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|313126623|ref|YP_004036893.1| - 0.0087 15.3 0.0 0.087 12.0 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|313126623|ref|YP_004036893.1| - 0.051 13.9 0.0 0.93 9.8 0.0 2.6 3 0 0 3 3 3 0 AAA domain HBB PF06777.11 gi|313126623|ref|YP_004036893.1| - 0.21 11.2 0.0 0.42 10.3 0.0 1.4 1 0 0 1 1 1 0 Helical and beta-bridge domain Peptidase_S8 PF00082.22 gi|313126624|ref|YP_004036894.1| - 3.3e-15 56.2 7.3 1.2e-09 37.9 1.6 2.3 1 1 1 2 2 2 2 Subtilase family HTH_20 PF12840.7 gi|313126625|ref|YP_004036895.1| - 1.6e-11 44.1 0.3 2.7e-11 43.3 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313126625|ref|YP_004036895.1| - 1.2e-06 28.3 0.0 2.1e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313126625|ref|YP_004036895.1| - 0.0002 21.2 0.1 0.00038 20.3 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313126625|ref|YP_004036895.1| - 0.00064 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|313126625|ref|YP_004036895.1| - 0.00081 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|313126625|ref|YP_004036895.1| - 0.0011 19.3 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator FaeA PF04703.12 gi|313126625|ref|YP_004036895.1| - 0.065 13.6 0.4 0.17 12.3 0.0 1.8 2 0 0 2 2 2 0 FaeA-like protein DUF2250 PF10007.9 gi|313126625|ref|YP_004036895.1| - 0.08 13.1 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Phage_rep_org_N PF09681.10 gi|313126625|ref|YP_004036895.1| - 0.098 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.12 gi|313126625|ref|YP_004036895.1| - 0.1 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain LexA_DNA_bind PF01726.16 gi|313126625|ref|YP_004036895.1| - 0.16 11.8 0.0 0.33 10.8 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain DUF3185 PF11381.8 gi|313126625|ref|YP_004036895.1| - 0.44 10.6 5.0 2.1 8.4 1.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3185) MFS_1 PF07690.16 gi|313126626|ref|YP_004036896.1| - 8.4e-37 126.9 71.4 5.1e-32 111.2 41.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|313126626|ref|YP_004036896.1| - 1.6e-08 33.8 12.5 1.6e-08 33.8 12.5 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|313126626|ref|YP_004036896.1| - 0.00017 20.3 22.0 0.00017 20.3 22.0 2.4 1 1 1 2 2 2 1 MFS/sugar transport protein DUF5596 PF18082.1 gi|313126626|ref|YP_004036896.1| - 0.06 13.2 0.1 0.21 11.4 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF5596) Carb_kinase PF01256.17 gi|313126627|ref|YP_004036897.1| - 9.8e-51 172.6 1.3 1.6e-50 171.9 1.3 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|313126627|ref|YP_004036897.1| - 5.8e-40 137.0 1.6 5.8e-40 137.0 1.6 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|313126627|ref|YP_004036897.1| - 4.3e-07 29.6 0.1 8.1e-07 28.7 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.21 gi|313126628|ref|YP_004036898.1| - 6.6e-49 165.5 2.4 7.6e-49 165.3 2.4 1.0 1 0 0 1 1 1 1 MoaC family PGF-CTERM PF18204.1 gi|313126629|ref|YP_004036899.1| - 6.4e-05 22.8 8.9 6.4e-05 22.8 8.9 1.8 2 0 0 2 2 2 1 PGF-CTERM motif Nop14 PF04147.12 gi|313126629|ref|YP_004036899.1| - 2.8 6.0 20.0 4.7 5.3 20.0 1.4 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.14 gi|313126629|ref|YP_004036899.1| - 9 4.5 16.5 20 3.3 16.5 1.6 1 0 0 1 1 1 0 CDC45-like protein GTP-bdg_N PF13167.6 gi|313126630|ref|YP_004036900.1| - 4.1e-21 75.5 0.0 9.1e-21 74.3 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|313126630|ref|YP_004036900.1| - 6.2e-18 64.9 0.0 1.8e-17 63.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|313126630|ref|YP_004036900.1| - 3.6e-16 59.5 5.9 8.1e-16 58.4 5.9 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|313126630|ref|YP_004036900.1| - 6.2e-10 38.9 0.1 1.9e-09 37.3 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|313126630|ref|YP_004036900.1| - 2.1e-06 27.7 0.0 0.038 13.9 0.0 2.6 3 0 0 3 3 3 2 RsgA GTPase cobW PF02492.19 gi|313126630|ref|YP_004036900.1| - 8.9e-06 25.4 0.1 0.00076 19.1 0.0 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|313126630|ref|YP_004036900.1| - 0.00038 20.0 0.0 0.73 9.3 0.0 2.8 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_18 PF13238.6 gi|313126630|ref|YP_004036900.1| - 0.0015 19.1 0.2 0.0096 16.5 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|313126630|ref|YP_004036900.1| - 0.013 15.9 1.1 0.03 14.7 0.2 2.1 1 1 1 2 2 2 0 AAA ATPase domain MMR_HSR1_Xtn PF16897.5 gi|313126630|ref|YP_004036900.1| - 0.016 15.2 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|313126630|ref|YP_004036900.1| - 0.031 14.5 0.0 11 6.3 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|313126630|ref|YP_004036900.1| - 0.036 13.5 0.3 12 5.4 0.0 2.6 2 1 1 3 3 3 0 ADP-ribosylation factor family AAA_14 PF13173.6 gi|313126630|ref|YP_004036900.1| - 0.095 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|313126630|ref|YP_004036900.1| - 0.11 12.8 0.1 0.38 11.0 0.0 2.0 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|313126630|ref|YP_004036900.1| - 0.15 11.8 0.0 14 5.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein FUN14 PF04930.15 gi|313126631|ref|YP_004036901.1| - 6.5e-21 74.6 4.8 7.7e-21 74.3 4.8 1.1 1 0 0 1 1 1 1 FUN14 family DUF3482 PF11981.8 gi|313126631|ref|YP_004036901.1| - 0.42 10.0 1.7 0.59 9.5 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) SBDS PF01172.18 gi|313126632|ref|YP_004036902.1| - 8.7e-21 73.8 0.0 1.4e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|313126632|ref|YP_004036902.1| - 3.7e-19 68.9 0.0 6.9e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Thioredoxin PF00085.20 gi|313126633|ref|YP_004036903.1| - 6.7e-28 96.7 0.0 7.4e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|313126633|ref|YP_004036903.1| - 5.4e-08 33.2 0.1 6.3e-06 26.6 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|313126633|ref|YP_004036903.1| - 6.8e-05 23.0 0.0 0.00013 22.1 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|313126633|ref|YP_004036903.1| - 0.0018 18.2 0.1 0.0033 17.4 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|313126633|ref|YP_004036903.1| - 0.0021 18.4 0.0 0.013 15.8 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|313126633|ref|YP_004036903.1| - 0.006 16.4 0.0 0.0077 16.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|313126633|ref|YP_004036903.1| - 0.0076 16.1 0.0 0.0095 15.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|313126633|ref|YP_004036903.1| - 0.037 14.0 0.0 0.074 13.0 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family Glutaredoxin PF00462.24 gi|313126633|ref|YP_004036903.1| - 0.079 13.2 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Redoxin PF08534.10 gi|313126633|ref|YP_004036903.1| - 0.12 12.1 0.1 0.29 10.8 0.0 1.6 1 1 0 1 1 1 0 Redoxin OST3_OST6 PF04756.13 gi|313126633|ref|YP_004036903.1| - 0.2 11.0 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family RibD_C PF01872.17 gi|313126634|ref|YP_004036904.1| - 8.2e-51 172.7 0.2 9.1e-51 172.5 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Glycos_transf_1 PF00534.20 gi|313126635|ref|YP_004036905.1| - 5.7e-28 97.6 0.0 1.3e-27 96.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313126635|ref|YP_004036905.1| - 3.3e-23 82.6 0.0 5.2e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313126635|ref|YP_004036905.1| - 1.6e-21 77.0 0.0 3.2e-21 76.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313126635|ref|YP_004036905.1| - 3.3e-18 66.7 0.0 5.3e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|313126635|ref|YP_004036905.1| - 4.3e-06 26.6 0.0 0.0045 16.7 0.0 2.7 1 1 1 2 2 2 2 Starch synthase catalytic domain Usp PF00582.26 gi|313126637|ref|YP_004036907.1| - 3.5e-20 72.9 0.8 4.4e-20 72.6 0.8 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2835 PF11197.8 gi|313126638|ref|YP_004036908.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2835) tRNA_anti-codon PF01336.25 gi|313126639|ref|YP_004036909.1| - 0.022 14.7 3.5 6.9 6.7 0.0 3.8 4 1 0 4 4 4 0 OB-fold nucleic acid binding domain zf-RING_7 PF02591.15 gi|313126639|ref|YP_004036909.1| - 0.05 13.8 0.2 0.11 12.7 0.2 1.6 1 0 0 1 1 1 0 C4-type zinc ribbon domain 4HBT PF03061.22 gi|313126639|ref|YP_004036909.1| - 0.083 13.3 0.3 23 5.4 0.1 2.5 2 0 0 2 2 2 0 Thioesterase superfamily Metallophos PF00149.28 gi|313126641|ref|YP_004036911.1| - 1.4e-08 35.5 0.0 1.7e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|313126641|ref|YP_004036911.1| - 2.4e-07 31.1 0.2 3.4e-07 30.6 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2976 PF11190.8 gi|313126642|ref|YP_004036912.1| - 0.031 14.1 0.3 0.04 13.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) LHC PF00556.20 gi|313126642|ref|YP_004036912.1| - 2.3 8.5 0.1 2.3 8.5 0.1 2.5 3 0 0 3 3 3 0 Antenna complex alpha/beta subunit DEAD_assoc PF08494.11 gi|313126643|ref|YP_004036913.1| - 3.4e-35 121.6 0.3 8.9e-35 120.2 0.0 1.9 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|313126643|ref|YP_004036913.1| - 9.3e-32 110.2 0.0 5.6e-31 107.7 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|313126643|ref|YP_004036913.1| - 6.8e-22 77.9 0.0 2.1e-20 73.1 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|313126643|ref|YP_004036913.1| - 7.5e-10 39.1 0.0 1.9e-09 37.8 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|313126643|ref|YP_004036913.1| - 3.4e-05 24.2 0.0 0.00071 19.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|313126643|ref|YP_004036913.1| - 0.0012 18.5 0.8 0.0046 16.6 0.8 2.0 1 0 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|313126643|ref|YP_004036913.1| - 0.0016 17.2 0.0 0.0033 16.2 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|313126643|ref|YP_004036913.1| - 0.028 14.7 0.2 0.29 11.4 0.1 2.7 2 1 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|313126643|ref|YP_004036913.1| - 0.043 13.3 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain HypA PF01155.19 gi|313126643|ref|YP_004036913.1| - 0.073 13.1 0.1 0.2 11.7 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Methyltransf_11 PF08241.12 gi|313126644|ref|YP_004036914.1| - 2.7e-09 37.6 0.2 3.8e-09 37.1 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313126644|ref|YP_004036914.1| - 6e-09 36.5 0.3 9e-09 35.9 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313126644|ref|YP_004036914.1| - 7.3e-06 25.8 0.0 9.4e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313126644|ref|YP_004036914.1| - 0.0031 17.4 0.0 0.0038 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313126644|ref|YP_004036914.1| - 0.021 15.6 0.0 0.029 15.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|313126644|ref|YP_004036914.1| - 0.026 14.1 0.1 0.035 13.6 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase small domain FtsJ PF01728.19 gi|313126644|ref|YP_004036914.1| - 0.043 13.9 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|313126644|ref|YP_004036914.1| - 0.21 11.6 0.0 0.32 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain AAA PF00004.29 gi|313126645|ref|YP_004036915.1| - 3.5e-93 309.0 0.0 4e-46 156.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313126645|ref|YP_004036915.1| - 2e-26 91.5 8.0 2.2e-13 49.8 0.2 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|313126645|ref|YP_004036915.1| - 3.1e-23 81.7 0.6 1.2e-22 79.9 0.7 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|313126645|ref|YP_004036915.1| - 1.6e-14 54.0 0.1 1.5e-05 24.8 0.0 3.6 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|313126645|ref|YP_004036915.1| - 1.6e-13 51.2 0.0 6.7e-06 26.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|313126645|ref|YP_004036915.1| - 2.1e-13 51.0 3.8 3.9e-05 24.1 0.0 4.1 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|313126645|ref|YP_004036915.1| - 2.9e-12 47.0 0.0 3.5e-05 24.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|313126645|ref|YP_004036915.1| - 1.3e-10 41.4 0.7 0.0019 18.2 0.2 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|313126645|ref|YP_004036915.1| - 3.2e-10 40.1 0.0 0.00049 20.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|313126645|ref|YP_004036915.1| - 1.5e-09 37.5 0.0 0.00047 19.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|313126645|ref|YP_004036915.1| - 6e-09 36.3 0.9 0.017 15.4 0.0 3.8 2 2 1 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|313126645|ref|YP_004036915.1| - 8.8e-07 28.8 0.0 0.042 13.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|313126645|ref|YP_004036915.1| - 1.6e-06 28.0 0.0 0.11 12.2 0.0 3.7 3 2 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|313126645|ref|YP_004036915.1| - 1.8e-06 27.5 0.4 0.064 12.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|313126645|ref|YP_004036915.1| - 2e-06 28.1 0.0 0.032 14.5 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|313126645|ref|YP_004036915.1| - 2.5e-06 28.0 0.0 0.099 13.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|313126645|ref|YP_004036915.1| - 5.3e-06 27.0 0.0 0.055 14.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter RNA_helicase PF00910.22 gi|313126645|ref|YP_004036915.1| - 6.1e-06 26.6 0.0 0.089 13.2 0.0 2.8 2 0 0 2 2 2 2 RNA helicase CDC48_2 PF02933.17 gi|313126645|ref|YP_004036915.1| - 7e-06 25.7 1.8 1.8e-05 24.4 0.1 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_3 PF07726.11 gi|313126645|ref|YP_004036915.1| - 1.1e-05 25.3 0.0 0.099 12.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|313126645|ref|YP_004036915.1| - 1.4e-05 25.0 0.0 0.14 11.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|313126645|ref|YP_004036915.1| - 1.6e-05 24.9 0.0 0.15 12.1 0.0 2.3 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPT PF07931.12 gi|313126645|ref|YP_004036915.1| - 2e-05 24.5 0.2 0.66 9.8 0.0 3.3 3 0 0 3 3 3 2 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|313126645|ref|YP_004036915.1| - 2.3e-05 24.2 0.1 0.32 10.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|313126645|ref|YP_004036915.1| - 3.2e-05 23.3 0.0 0.31 10.3 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin NACHT PF05729.12 gi|313126645|ref|YP_004036915.1| - 3.5e-05 23.8 0.8 0.43 10.5 0.0 3.5 3 0 0 3 3 3 2 NACHT domain AAA_7 PF12775.7 gi|313126645|ref|YP_004036915.1| - 4.5e-05 23.0 0.0 0.039 13.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_19 PF13245.6 gi|313126645|ref|YP_004036915.1| - 8.2e-05 23.0 0.0 0.72 10.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|313126645|ref|YP_004036915.1| - 0.00011 21.6 0.0 0.2 10.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|313126645|ref|YP_004036915.1| - 0.00012 22.2 0.0 0.79 9.8 0.0 3.4 2 1 1 3 3 3 1 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|313126645|ref|YP_004036915.1| - 0.00019 20.7 0.0 0.53 9.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|313126645|ref|YP_004036915.1| - 0.00019 21.0 0.2 0.58 9.6 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.6 gi|313126645|ref|YP_004036915.1| - 0.00034 20.4 0.0 1.3 8.7 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_17 PF13207.6 gi|313126645|ref|YP_004036915.1| - 0.00046 20.6 0.0 0.73 10.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|313126645|ref|YP_004036915.1| - 0.0007 18.9 0.0 1.2 8.2 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain ATPase PF06745.13 gi|313126645|ref|YP_004036915.1| - 0.00092 18.6 0.0 1.3 8.4 0.0 2.9 3 0 0 3 3 3 2 KaiC NTPase_1 PF03266.15 gi|313126645|ref|YP_004036915.1| - 0.0022 17.9 0.0 4.5 7.2 0.0 3.7 3 0 0 3 3 3 0 NTPase DUF815 PF05673.13 gi|313126645|ref|YP_004036915.1| - 0.0022 17.2 0.0 2.2 7.4 0.0 2.8 3 0 0 3 3 2 1 Protein of unknown function (DUF815) Viral_helicase1 PF01443.18 gi|313126645|ref|YP_004036915.1| - 0.0063 16.3 0.0 3.2 7.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Torsin PF06309.11 gi|313126645|ref|YP_004036915.1| - 0.0085 16.2 0.0 5.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin Cytidylate_kin PF02224.18 gi|313126645|ref|YP_004036915.1| - 0.0093 15.7 0.1 2.4 7.9 0.0 2.8 2 0 0 2 2 2 1 Cytidylate kinase Hydin_ADK PF17213.3 gi|313126645|ref|YP_004036915.1| - 0.014 15.7 0.8 0.98 9.7 0.1 2.5 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Rad17 PF03215.15 gi|313126645|ref|YP_004036915.1| - 0.017 15.1 0.0 6.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|313126645|ref|YP_004036915.1| - 0.017 14.7 8.8 1.3 8.6 0.1 4.1 2 2 1 4 4 4 0 AAA domain Cytidylate_kin2 PF13189.6 gi|313126645|ref|YP_004036915.1| - 0.023 14.8 0.0 0.89 9.7 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family SKI PF01202.22 gi|313126645|ref|YP_004036915.1| - 0.03 14.5 0.1 7 6.8 0.1 2.5 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.15 gi|313126645|ref|YP_004036915.1| - 0.042 13.9 0.0 7.6 6.5 0.0 2.7 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit DAP3 PF10236.9 gi|313126645|ref|YP_004036915.1| - 0.048 12.8 0.0 3.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AFG1_ATPase PF03969.16 gi|313126645|ref|YP_004036915.1| - 0.053 12.4 0.0 8.9 5.1 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase TniB PF05621.11 gi|313126645|ref|YP_004036915.1| - 0.12 11.7 0.0 20 4.5 0.0 2.9 4 0 0 4 4 2 0 Bacterial TniB protein Zot PF05707.12 gi|313126645|ref|YP_004036915.1| - 0.13 11.9 0.0 9.2 5.9 0.0 3.1 3 0 0 3 3 3 0 Zonular occludens toxin (Zot) ATPase_2 PF01637.18 gi|313126645|ref|YP_004036915.1| - 0.15 11.9 0.0 15 5.4 0.0 3.0 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea DUF4379 PF14311.6 gi|313126646|ref|YP_004036916.1| - 0.038 14.4 0.0 0.04 14.3 0.0 1.1 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|313126646|ref|YP_004036916.1| - 0.039 13.8 0.3 0.066 13.0 0.3 1.5 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO KTSC PF13619.6 gi|313126648|ref|YP_004036918.1| - 0.0055 16.5 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 KTSC domain MaoC_dehydratas PF01575.19 gi|313126649|ref|YP_004036919.1| - 5.5e-19 67.9 0.0 6.8e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313126649|ref|YP_004036919.1| - 2.4e-08 34.2 0.1 3.9e-08 33.5 0.1 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.13 gi|313126649|ref|YP_004036919.1| - 0.039 13.6 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain DUF296 PF03479.15 gi|313126649|ref|YP_004036919.1| - 0.098 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain GHMP_kinases_N PF00288.26 gi|313126650|ref|YP_004036920.1| - 2e-12 47.1 1.4 2e-12 47.1 1.4 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|313126650|ref|YP_004036920.1| - 0.042 14.2 0.1 0.12 12.7 0.1 1.8 1 0 0 1 1 1 0 GHMP kinases C terminal CM_2 PF01817.21 gi|313126651|ref|YP_004036921.1| - 3.3e-14 53.0 3.7 3.9e-14 52.7 3.7 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Pox_A_type_inc PF04508.12 gi|313126651|ref|YP_004036921.1| - 0.045 13.6 1.7 0.11 12.4 1.7 1.6 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat DUF3792 PF12670.7 gi|313126652|ref|YP_004036922.1| - 0.0071 16.5 0.2 0.0071 16.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) PrgI PF12666.7 gi|313126652|ref|YP_004036922.1| - 0.055 14.2 0.5 0.06 14.1 0.5 1.1 1 0 0 1 1 1 0 PrgI family protein MtrC PF04211.13 gi|313126652|ref|YP_004036922.1| - 0.11 11.5 6.8 0.13 11.2 6.8 1.0 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C SurE PF01975.17 gi|313126653|ref|YP_004036923.1| - 5.3e-44 150.3 0.2 6.4e-44 150.1 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_12 PF08242.12 gi|313126654|ref|YP_004036924.1| - 1.1e-07 32.5 0.0 2.6e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313126654|ref|YP_004036924.1| - 4.2e-07 30.0 0.0 8.3e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|313126654|ref|YP_004036924.1| - 1.7e-05 24.3 0.0 2.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|313126654|ref|YP_004036924.1| - 4.4e-05 23.3 0.0 7.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313126654|ref|YP_004036924.1| - 0.00027 21.6 0.0 0.00067 20.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313126654|ref|YP_004036924.1| - 0.00066 20.3 0.0 0.0019 18.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|313126654|ref|YP_004036924.1| - 0.2 11.4 0.2 4.8 6.9 0.0 2.7 2 1 1 3 3 3 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PDH PF02153.17 gi|313126655|ref|YP_004036925.1| - 2.5e-12 46.4 0.5 1.1e-10 41.0 0.5 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|313126655|ref|YP_004036925.1| - 0.00023 21.7 0.2 0.00087 19.8 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|313126655|ref|YP_004036925.1| - 0.0016 18.3 0.8 0.012 15.5 0.0 2.4 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313126655|ref|YP_004036925.1| - 0.022 14.4 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|313126655|ref|YP_004036925.1| - 0.027 14.5 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|313126655|ref|YP_004036925.1| - 0.03 14.5 0.3 0.099 12.8 0.0 2.0 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|313126655|ref|YP_004036925.1| - 0.046 14.0 0.0 0.44 10.8 0.0 2.4 2 1 0 2 2 2 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|313126655|ref|YP_004036925.1| - 0.052 13.8 1.5 0.064 13.5 0.0 2.0 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|313126655|ref|YP_004036925.1| - 0.053 14.4 1.5 0.27 12.1 0.0 2.7 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.25 gi|313126656|ref|YP_004036926.1| - 1.6e-34 119.1 0.0 2.1e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313126656|ref|YP_004036926.1| - 2.3e-29 102.6 0.0 3.2e-29 102.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|313126656|ref|YP_004036926.1| - 4.2e-09 36.6 0.0 5.7e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313126656|ref|YP_004036926.1| - 0.0054 16.2 0.1 0.0085 15.6 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAA_hydro_N_2 PF18288.1 gi|313126657|ref|YP_004036927.1| - 0.02 15.3 0.0 0.075 13.5 0.0 1.8 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 Peptidase_M24 PF00557.24 gi|313126658|ref|YP_004036928.1| - 8.9e-50 169.3 1.8 1.2e-49 168.9 1.8 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|313126658|ref|YP_004036928.1| - 6.1e-09 36.6 0.1 1.6e-08 35.3 0.1 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain EPSP_synthase PF00275.20 gi|313126659|ref|YP_004036929.1| - 5e-108 361.5 0.1 6.1e-108 361.2 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Chorismate_synt PF01264.21 gi|313126661|ref|YP_004036931.1| - 8.2e-121 402.7 0.0 9.4e-121 402.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase POR PF01558.18 gi|313126662|ref|YP_004036932.1| - 7.1e-49 166.3 0.0 1.3e-48 165.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|313126662|ref|YP_004036932.1| - 1.5e-48 165.6 0.2 3.4e-48 164.4 0.2 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|313126662|ref|YP_004036932.1| - 5.1e-12 46.0 0.0 1e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|313126662|ref|YP_004036932.1| - 4.2e-05 23.2 0.1 0.00011 21.8 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Glyco_tran_WecB PF03808.13 gi|313126662|ref|YP_004036932.1| - 0.13 12.2 0.0 0.35 10.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family TPP_enzyme_C PF02775.21 gi|313126663|ref|YP_004036933.1| - 2e-29 102.3 0.1 2.9e-29 101.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|313126663|ref|YP_004036933.1| - 0.14 12.3 2.4 0.37 11.0 2.4 1.8 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_24 PF13412.6 gi|313126664|ref|YP_004036934.1| - 4.6e-13 48.5 0.0 7.8e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|313126664|ref|YP_004036934.1| - 5.9e-10 39.0 0.0 9.3e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|313126664|ref|YP_004036934.1| - 4.4e-09 36.0 0.0 7.8e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313126664|ref|YP_004036934.1| - 1.5e-07 31.2 0.0 4.7e-07 29.6 0.0 1.8 2 0 0 2 2 1 1 HTH domain MarR_2 PF12802.7 gi|313126664|ref|YP_004036934.1| - 4e-06 26.6 0.1 1.8e-05 24.5 0.0 2.0 3 0 0 3 3 3 1 MarR family HTH_DeoR PF08220.12 gi|313126664|ref|YP_004036934.1| - 8.6e-06 25.4 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|313126664|ref|YP_004036934.1| - 1.2e-05 25.0 0.0 2.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313126664|ref|YP_004036934.1| - 1.6e-05 24.9 0.0 2.6e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|313126664|ref|YP_004036934.1| - 2.4e-05 24.2 0.0 5.7e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|313126664|ref|YP_004036934.1| - 4.2e-05 23.2 0.0 8.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|313126664|ref|YP_004036934.1| - 5.1e-05 23.4 0.0 0.00011 22.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|313126664|ref|YP_004036934.1| - 0.00015 22.0 0.0 0.00033 20.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.6 gi|313126664|ref|YP_004036934.1| - 0.00016 21.6 0.0 0.0003 20.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|313126664|ref|YP_004036934.1| - 0.00057 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|313126664|ref|YP_004036934.1| - 0.0019 18.1 0.0 0.005 16.8 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|313126664|ref|YP_004036934.1| - 0.0021 18.1 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|313126664|ref|YP_004036934.1| - 0.0034 17.0 0.0 0.0075 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|313126664|ref|YP_004036934.1| - 0.0035 17.0 0.0 0.009 15.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313126664|ref|YP_004036934.1| - 0.0036 17.1 0.0 0.006 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|313126664|ref|YP_004036934.1| - 0.0061 16.3 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain FaeA PF04703.12 gi|313126664|ref|YP_004036934.1| - 0.0064 16.8 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_6 PF01418.17 gi|313126664|ref|YP_004036934.1| - 0.0079 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_28 PF13518.6 gi|313126664|ref|YP_004036934.1| - 0.0087 16.2 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 gi|313126664|ref|YP_004036934.1| - 0.086 12.6 0.0 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family TetR_N PF00440.23 gi|313126664|ref|YP_004036934.1| - 0.1 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.16 gi|313126664|ref|YP_004036934.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TFIIE_alpha PF02002.17 gi|313126664|ref|YP_004036934.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit IMS PF00817.20 gi|313126665|ref|YP_004036935.1| - 4.5e-40 137.1 0.1 1.1e-39 135.8 0.0 1.6 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.8 gi|313126665|ref|YP_004036935.1| - 2.1e-13 51.0 0.0 1.9e-12 47.9 0.0 2.1 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|313126665|ref|YP_004036935.1| - 8.2e-08 32.1 0.0 1.9e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|313126665|ref|YP_004036935.1| - 1.2e-06 29.0 0.0 4.1e-06 27.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|313126665|ref|YP_004036935.1| - 1.9e-05 24.4 0.0 4.1e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|313126665|ref|YP_004036935.1| - 0.0094 16.2 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DUF1805 PF08827.11 gi|313126665|ref|YP_004036935.1| - 0.042 14.2 0.8 3.6 8.0 0.0 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF1805) Alpha_GJ PF03229.13 gi|313126665|ref|YP_004036935.1| - 1.3 9.5 7.3 25 5.5 3.3 2.6 2 0 0 2 2 2 0 Alphavirus glycoprotein J DUF87 PF01935.17 gi|313126666|ref|YP_004036936.1| - 2.4e-13 50.7 0.5 6.4e-13 49.3 0.0 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain TMF_DNA_bd PF12329.8 gi|313126666|ref|YP_004036936.1| - 0.0011 18.9 4.2 0.0027 17.7 4.2 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding CbiA PF01656.23 gi|313126666|ref|YP_004036936.1| - 0.0024 17.9 0.0 0.0043 17.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Med9 PF07544.13 gi|313126666|ref|YP_004036936.1| - 0.0027 17.7 3.8 0.01 15.9 3.6 2.1 2 0 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 DUF853 PF05872.12 gi|313126666|ref|YP_004036936.1| - 0.0029 16.3 0.9 0.034 12.8 0.0 2.4 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) ERM PF00769.19 gi|313126666|ref|YP_004036936.1| - 0.0031 17.4 2.8 0.005 16.7 2.8 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family APS_kinase PF01583.20 gi|313126666|ref|YP_004036936.1| - 0.0045 16.9 0.1 0.011 15.6 0.0 1.7 2 0 0 2 2 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|313126666|ref|YP_004036936.1| - 0.01 16.2 1.2 0.26 11.6 0.0 3.0 3 0 0 3 3 3 0 AAA ATPase domain ResIII PF04851.15 gi|313126666|ref|YP_004036936.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|313126666|ref|YP_004036936.1| - 0.02 13.8 0.0 0.042 12.8 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|313126666|ref|YP_004036936.1| - 0.024 13.6 0.1 0.13 11.1 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain APG6_N PF17675.1 gi|313126666|ref|YP_004036936.1| - 0.038 14.5 3.3 0.099 13.2 3.3 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region Pox_A_type_inc PF04508.12 gi|313126666|ref|YP_004036936.1| - 0.078 12.9 5.8 0.12 12.3 4.4 2.1 1 1 1 2 2 2 0 Viral A-type inclusion protein repeat EzrA PF06160.12 gi|313126666|ref|YP_004036936.1| - 0.081 11.1 1.5 0.13 10.4 1.5 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA SKA1 PF07160.12 gi|313126666|ref|YP_004036936.1| - 0.084 12.7 0.8 0.14 12.0 0.8 1.3 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 DUF4754 PF15946.5 gi|313126666|ref|YP_004036936.1| - 0.088 13.1 0.1 2.3 8.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4754) DUF3584 PF12128.8 gi|313126666|ref|YP_004036936.1| - 0.091 10.3 4.8 0.12 9.8 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|313126666|ref|YP_004036936.1| - 0.097 12.8 0.0 0.32 11.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 gi|313126666|ref|YP_004036936.1| - 0.099 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 NTPase WDCP PF15390.6 gi|313126666|ref|YP_004036936.1| - 0.14 10.5 0.1 0.2 10.0 0.1 1.1 1 0 0 1 1 1 0 WD repeat and coiled-coil-containing protein family Spc7 PF08317.11 gi|313126666|ref|YP_004036936.1| - 0.16 10.8 3.3 0.29 9.9 3.3 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4515 PF14988.6 gi|313126666|ref|YP_004036936.1| - 0.18 11.6 6.8 0.18 11.6 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) AAA_29 PF13555.6 gi|313126666|ref|YP_004036936.1| - 0.19 11.5 0.3 0.43 10.3 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DivIC PF04977.15 gi|313126666|ref|YP_004036936.1| - 0.23 11.2 3.8 0.54 10.1 3.8 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF5082 PF16888.5 gi|313126666|ref|YP_004036936.1| - 0.31 11.3 3.1 0.59 10.4 3.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) OmpH PF03938.14 gi|313126666|ref|YP_004036936.1| - 0.32 11.3 6.7 0.6 10.4 4.9 2.0 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Atg14 PF10186.9 gi|313126666|ref|YP_004036936.1| - 0.85 8.6 2.0 1.2 8.1 2.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc24 PF08286.11 gi|313126666|ref|YP_004036936.1| - 1.4 9.2 3.6 3.2 8.1 3.6 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF641 PF04859.12 gi|313126666|ref|YP_004036936.1| - 1.5 9.2 6.0 7.1 7.0 4.2 2.6 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF4407 PF14362.6 gi|313126666|ref|YP_004036936.1| - 1.6 8.0 7.1 2.7 7.3 7.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Med4 PF10018.9 gi|313126666|ref|YP_004036936.1| - 2.2 7.9 7.3 1.1 8.9 4.6 1.8 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 TIM PF00121.18 gi|313126667|ref|YP_004036937.1| - 7.6e-08 32.0 0.0 9.6e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|313126667|ref|YP_004036937.1| - 0.0031 16.8 1.4 0.0031 16.8 1.4 2.2 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|313126667|ref|YP_004036937.1| - 0.07 12.3 0.0 0.12 11.6 0.0 1.6 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.6 gi|313126667|ref|YP_004036937.1| - 0.1 12.7 2.2 0.42 10.7 0.3 2.5 2 0 0 2 2 2 0 HAD-hyrolase-like FMN_dh PF01070.18 gi|313126667|ref|YP_004036937.1| - 0.56 9.2 7.8 0.07 12.2 3.0 1.9 2 1 0 2 2 2 0 FMN-dependent dehydrogenase HTH_3 PF01381.22 gi|313126669|ref|YP_004036939.1| - 4.7e-10 39.4 0.2 9.2e-10 38.4 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|313126669|ref|YP_004036939.1| - 6.5e-09 35.7 0.3 1e-08 35.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|313126669|ref|YP_004036939.1| - 1.5e-07 31.7 0.0 2.6e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|313126669|ref|YP_004036939.1| - 2.7e-05 23.9 0.1 4.4e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RAP1 PF07218.11 gi|313126669|ref|YP_004036939.1| - 0.062 11.6 7.1 0.056 11.7 7.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) HTH_37 PF13744.6 gi|313126669|ref|YP_004036939.1| - 0.1 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Macoilin PF09726.9 gi|313126669|ref|YP_004036939.1| - 0.14 10.7 6.2 0.14 10.7 6.2 1.0 1 0 0 1 1 1 0 Macoilin family IATP PF04568.12 gi|313126669|ref|YP_004036939.1| - 0.17 12.3 1.5 0.28 11.6 1.5 1.4 1 0 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP CCDC106 PF15794.5 gi|313126669|ref|YP_004036939.1| - 0.42 10.3 6.1 0.6 9.8 6.1 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 PI3K_1B_p101 PF10486.9 gi|313126669|ref|YP_004036939.1| - 1 7.0 7.7 0.98 7.1 7.7 1.2 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit Apt1 PF10351.9 gi|313126669|ref|YP_004036939.1| - 1.1 8.0 7.7 1.4 7.7 7.7 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Pox_A12 PF04651.13 gi|313126669|ref|YP_004036939.1| - 1.2 9.2 13.0 4.8 7.2 13.0 1.8 1 1 1 2 2 2 0 Poxvirus A12 protein Secretin_N_2 PF07655.13 gi|313126669|ref|YP_004036939.1| - 1.9 9.1 18.4 1.5 9.4 15.9 2.0 2 0 0 2 2 2 0 Secretin N-terminal domain DUF4614 PF15391.6 gi|313126669|ref|YP_004036939.1| - 2.9 7.9 10.5 4.1 7.4 10.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) Sporozoite_P67 PF05642.11 gi|313126669|ref|YP_004036939.1| - 3.2 5.7 11.7 4.2 5.3 11.7 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF515 PF04415.12 gi|313126669|ref|YP_004036939.1| - 3.2 6.1 11.7 3.6 5.9 11.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) RSRP PF17069.5 gi|313126669|ref|YP_004036939.1| - 8.5 5.9 21.4 11 5.5 21.4 1.2 1 0 0 1 1 1 0 Arginine/Serine-Rich protein 1 CDP-OH_P_transf PF01066.21 gi|313126670|ref|YP_004036940.1| - 5.8e-07 30.2 1.5 5.8e-07 30.2 1.5 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.6 gi|313126671|ref|YP_004036941.1| - 4.1e-25 88.8 0.2 5.3e-25 88.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|313126671|ref|YP_004036941.1| - 1.5e-07 31.9 0.2 0.0042 17.5 0.0 2.4 2 1 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|313126671|ref|YP_004036941.1| - 2.4e-07 31.0 0.5 0.0085 16.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SKI PF01202.22 gi|313126671|ref|YP_004036941.1| - 4.5e-06 26.9 0.3 0.057 13.5 0.1 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_5 PF07728.14 gi|313126671|ref|YP_004036941.1| - 0.00022 21.2 0.0 0.00041 20.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|313126671|ref|YP_004036941.1| - 0.00046 20.5 0.7 0.00046 20.5 0.7 2.2 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|313126671|ref|YP_004036941.1| - 0.00049 20.5 0.1 0.0013 19.1 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) dNK PF01712.19 gi|313126671|ref|YP_004036941.1| - 0.00062 19.7 0.3 0.19 11.6 0.0 2.1 1 1 1 2 2 2 2 Deoxynucleoside kinase Thymidylate_kin PF02223.17 gi|313126671|ref|YP_004036941.1| - 0.0064 16.2 0.2 1.9 8.1 0.0 2.1 2 0 0 2 2 2 2 Thymidylate kinase AAA_22 PF13401.6 gi|313126671|ref|YP_004036941.1| - 0.0066 16.7 0.1 0.012 15.9 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126671|ref|YP_004036941.1| - 0.0075 16.7 1.8 0.017 15.5 1.8 1.7 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|313126671|ref|YP_004036941.1| - 0.012 14.9 0.1 0.041 13.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.15 gi|313126671|ref|YP_004036941.1| - 0.019 14.9 0.4 0.046 13.6 0.1 1.8 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.6 gi|313126671|ref|YP_004036941.1| - 0.044 14.1 0.1 0.089 13.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|313126671|ref|YP_004036941.1| - 0.08 12.7 0.5 0.097 12.4 0.5 1.5 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|313126671|ref|YP_004036941.1| - 0.1 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|313126671|ref|YP_004036941.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|313126671|ref|YP_004036941.1| - 0.18 11.5 4.7 0.6 9.8 3.9 2.3 1 1 1 2 2 2 0 AAA domain CoaE PF01121.20 gi|313126671|ref|YP_004036941.1| - 0.51 10.0 2.3 2.3 7.8 0.3 2.5 1 1 0 2 2 2 0 Dephospho-CoA kinase ATPase PF06745.13 gi|313126671|ref|YP_004036941.1| - 0.82 9.0 3.0 1 8.6 0.7 2.0 1 1 1 2 2 2 0 KaiC Aminotran_1_2 PF00155.21 gi|313126672|ref|YP_004036942.1| - 1.4e-63 215.2 0.0 1.6e-63 215.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|313126672|ref|YP_004036942.1| - 0.0012 17.8 0.1 0.0029 16.5 0.0 1.5 2 0 0 2 2 2 1 Allinase FTR PF01913.18 gi|313126672|ref|YP_004036942.1| - 0.0021 18.0 0.1 0.004 17.1 0.1 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase DdrB PF12747.7 gi|313126672|ref|YP_004036942.1| - 0.087 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 DdrB-like protein DUF4911 PF16256.5 gi|313126672|ref|YP_004036942.1| - 0.11 12.5 0.1 20 5.3 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4911) HTH_Tnp_1 PF01527.20 gi|313126672|ref|YP_004036942.1| - 0.11 12.8 0.0 0.32 11.4 0.0 1.7 1 0 0 1 1 1 0 Transposase Met_gamma_lyase PF06838.11 gi|313126672|ref|YP_004036942.1| - 0.16 10.5 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase PBP_like_2 PF12849.7 gi|313126673|ref|YP_004036943.1| - 4e-20 72.6 0.1 5.1e-20 72.3 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|313126673|ref|YP_004036943.1| - 1.8e-07 31.2 0.4 6.3e-07 29.4 0.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|313126673|ref|YP_004036943.1| - 3.4e-07 29.8 0.1 4.9e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 LysR substrate binding domain GMC_oxred_C PF05199.13 gi|313126674|ref|YP_004036944.1| - 6.8e-25 88.3 0.8 2.8e-24 86.3 0.8 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|313126674|ref|YP_004036944.1| - 2.6e-13 50.0 0.0 6.4e-13 48.7 0.0 1.7 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.24 gi|313126674|ref|YP_004036944.1| - 2e-10 40.8 0.4 0.00073 19.2 0.1 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313126674|ref|YP_004036944.1| - 1.3e-07 31.0 1.6 0.0025 17.0 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|313126674|ref|YP_004036944.1| - 1.5e-05 24.4 0.1 0.0012 18.1 0.1 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|313126674|ref|YP_004036944.1| - 5.1e-05 23.4 1.0 0.00014 22.0 0.2 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|313126674|ref|YP_004036944.1| - 7.9e-05 21.9 0.2 0.00012 21.2 0.2 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|313126674|ref|YP_004036944.1| - 0.00012 21.4 2.2 0.005 16.1 0.2 2.4 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|313126674|ref|YP_004036944.1| - 0.0012 17.6 0.6 0.0071 15.1 0.4 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|313126674|ref|YP_004036944.1| - 0.0045 16.4 2.1 1.1 8.6 2.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase ApbA PF02558.16 gi|313126674|ref|YP_004036944.1| - 0.036 13.7 0.2 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA BtrH_N PF14399.6 gi|313126674|ref|YP_004036944.1| - 0.1 12.9 0.0 0.35 11.1 0.0 1.8 2 0 0 2 2 2 0 Butirosin biosynthesis protein H, N-terminal Pyr_redox_3 PF13738.6 gi|313126674|ref|YP_004036944.1| - 0.12 11.6 0.0 0.47 9.7 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|313126674|ref|YP_004036944.1| - 0.16 12.6 0.8 0.35 11.5 0.8 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Thi4 PF01946.17 gi|313126674|ref|YP_004036944.1| - 0.2 10.9 0.1 0.37 10.0 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Gluconate_2-dh3 PF13618.6 gi|313126675|ref|YP_004036945.1| - 4.8e-08 33.3 0.0 7.4e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 DUF2059 PF09832.9 gi|313126675|ref|YP_004036945.1| - 0.013 15.5 0.0 0.18 11.9 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2059) DUF1648 PF07853.11 gi|313126676|ref|YP_004036946.1| - 9.4e-12 44.4 2.0 9.4e-12 44.4 2.0 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) FAA_hydrolase PF01557.18 gi|313126677|ref|YP_004036947.1| - 1.3e-66 224.4 0.0 1.5e-66 224.2 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|313126677|ref|YP_004036947.1| - 0.025 15.5 0.3 0.7 10.8 0.3 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2437) Lactamase_B_3 PF13483.6 gi|313126678|ref|YP_004036948.1| - 1.5e-19 70.5 0.6 2.1e-19 70.0 0.3 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|313126678|ref|YP_004036948.1| - 1.7e-15 57.1 2.2 2.5e-15 56.5 2.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313126678|ref|YP_004036948.1| - 1.1e-10 41.8 5.4 1.6e-10 41.3 5.0 1.6 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily OsmC PF02566.19 gi|313126679|ref|YP_004036949.1| - 1e-13 51.6 0.0 1.4e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DJ-1_PfpI PF01965.24 gi|313126681|ref|YP_004036951.1| - 2.6e-55 186.7 0.0 3.2e-55 186.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|313126681|ref|YP_004036951.1| - 2e-05 24.2 0.0 3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase PF00117.28 gi|313126681|ref|YP_004036951.1| - 4e-05 23.5 0.0 5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|313126681|ref|YP_004036951.1| - 0.0017 18.0 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain ThiJ_like PF17124.5 gi|313126681|ref|YP_004036951.1| - 0.017 14.8 0.0 0.076 12.7 0.0 1.9 1 1 1 2 2 2 0 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|313126681|ref|YP_004036951.1| - 0.048 12.8 0.0 0.068 12.3 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SnoaL_3 PF13474.6 gi|313126681|ref|YP_004036951.1| - 0.057 13.7 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 SnoaL-like domain Hydrolase_6 PF13344.6 gi|313126682|ref|YP_004036952.1| - 2e-24 85.6 0.0 4.8e-24 84.4 0.0 1.7 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313126682|ref|YP_004036952.1| - 1.7e-23 82.4 0.7 1e-22 80.0 0.3 2.3 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|313126682|ref|YP_004036952.1| - 4.6e-08 33.6 0.3 6.6e-08 33.1 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|313126682|ref|YP_004036952.1| - 2.2e-05 24.6 0.1 8.4e-05 22.7 0.0 2.0 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|313126682|ref|YP_004036952.1| - 0.00079 19.1 0.1 0.0022 17.6 0.1 1.8 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase acVLRF1 PF18859.1 gi|313126682|ref|YP_004036952.1| - 0.05 13.9 1.6 0.23 11.8 0.1 2.2 2 0 0 2 2 2 0 Actinobacteria/chloroflexi VLRF1 release factor MASE1 PF05231.14 gi|313126683|ref|YP_004036953.1| - 0.00054 19.2 1.3 0.00062 19.0 1.3 1.0 1 0 0 1 1 1 1 MASE1 C166 PF17615.2 gi|313126683|ref|YP_004036953.1| - 0.0088 16.2 1.8 0.0097 16.1 1.8 1.1 1 0 0 1 1 1 1 Family of unknown function Adeno_E3B PF03376.14 gi|313126683|ref|YP_004036953.1| - 0.037 14.3 2.3 0.049 13.9 2.3 1.3 1 0 0 1 1 1 0 Adenovirus E3B protein TMEM43 PF07787.12 gi|313126683|ref|YP_004036953.1| - 0.18 11.1 1.1 0.21 10.9 1.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 B12D PF06522.11 gi|313126683|ref|YP_004036953.1| - 4.5 7.1 4.7 6 6.7 1.3 2.2 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit GCH_III PF05165.12 gi|313126684|ref|YP_004036954.1| - 4.9e-88 294.6 0.0 6.4e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|313126684|ref|YP_004036954.1| - 8.5e-07 29.2 0.0 0.027 14.7 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|313126684|ref|YP_004036954.1| - 0.00014 22.2 0.0 0.01 16.2 0.0 2.2 2 0 0 2 2 2 1 minimal CRISPR polymerase domain HalOD1 PF18545.1 gi|313126685|ref|YP_004036955.1| - 1.3e-15 57.4 0.0 1.6e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Cadherin_4 PF17803.1 gi|313126685|ref|YP_004036955.1| - 0.076 13.7 0.1 0.11 13.2 0.1 1.5 1 1 0 1 1 1 0 Bacterial cadherin-like domain Putative_PNPOx PF01243.20 gi|313126686|ref|YP_004036956.1| - 1.4e-15 57.2 0.0 1.7e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|313126686|ref|YP_004036956.1| - 4e-07 30.1 0.0 4.8e-07 29.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|313126686|ref|YP_004036956.1| - 0.0013 18.3 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like zf-C2H2_4 PF13894.6 gi|313126687|ref|YP_004036957.1| - 0.023 15.5 2.0 0.042 14.7 2.0 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger zf_C2H2_ZHX PF18387.1 gi|313126687|ref|YP_004036957.1| - 0.026 14.1 0.3 0.048 13.3 0.3 1.4 1 0 0 1 1 1 0 Zinc-fingers and homeoboxes C2H2 finger domain HalOD2 PF18547.1 gi|313126687|ref|YP_004036957.1| - 0.062 13.2 0.2 0.11 12.5 0.1 1.5 2 0 0 2 2 2 0 Halobacterial output domain 2 DUF4131 PF13567.6 gi|313126690|ref|YP_004036960.1| - 3.1 7.4 6.1 0.96 9.1 2.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PEP-CTERM PF07589.11 gi|313126690|ref|YP_004036960.1| - 6.1 7.1 10.5 2.4 8.4 0.2 3.0 3 0 0 3 3 3 0 PEP-CTERM motif Zn-ribbon_8 PF09723.10 gi|313126693|ref|YP_004036963.1| - 0.046 13.8 3.7 0.65 10.2 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Fer2 PF00111.27 gi|313126696|ref|YP_004036966.1| - 1.2e-15 57.2 0.3 1.8e-15 56.6 0.3 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.11 gi|313126697|ref|YP_004036967.1| - 6e-193 641.8 0.2 7e-193 641.5 0.2 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Beta_propel PF09826.9 gi|313126697|ref|YP_004036967.1| - 0.16 10.8 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Beta propeller domain IMPDH PF00478.25 gi|313126698|ref|YP_004036968.1| - 1.4e-140 468.2 7.9 1.6e-140 468.0 7.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|313126698|ref|YP_004036968.1| - 2e-23 82.6 6.2 3.3e-12 46.7 0.6 2.8 2 0 0 2 2 2 2 CBS domain FMN_dh PF01070.18 gi|313126698|ref|YP_004036968.1| - 2.2e-09 36.8 2.9 3.3e-09 36.2 2.9 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|313126698|ref|YP_004036968.1| - 8e-09 35.3 5.7 8e-06 25.5 2.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase Glu_synthase PF01645.17 gi|313126698|ref|YP_004036968.1| - 0.00012 21.4 3.2 0.00023 20.4 3.2 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|313126698|ref|YP_004036968.1| - 0.0013 18.0 1.2 0.003 16.8 1.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|313126698|ref|YP_004036968.1| - 0.0019 17.5 1.9 0.0019 17.5 1.9 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|313126698|ref|YP_004036968.1| - 0.0042 16.6 1.3 0.025 14.0 0.1 1.9 1 1 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|313126698|ref|YP_004036968.1| - 0.0099 15.0 0.5 0.025 13.7 0.2 1.7 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) Regulator_TrmB PF11495.8 gi|313126699|ref|YP_004036969.1| - 1.7e-61 207.4 0.1 2.1e-61 207.1 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|313126699|ref|YP_004036969.1| - 2.9e-15 55.9 0.0 5.4e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|313126699|ref|YP_004036969.1| - 0.00088 19.2 0.0 0.0026 17.7 0.0 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|313126699|ref|YP_004036969.1| - 0.0021 17.9 0.1 0.0051 16.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313126699|ref|YP_004036969.1| - 0.046 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|313126699|ref|YP_004036969.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|313126699|ref|YP_004036969.1| - 0.1 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HalX PF08663.10 gi|313126700|ref|YP_004036970.1| - 1.1e-24 86.5 9.6 1.1e-24 86.5 9.6 2.5 3 0 0 3 3 3 1 HalX domain Response_reg PF00072.24 gi|313126700|ref|YP_004036970.1| - 3.5e-19 69.0 0.1 5.8e-19 68.3 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_24 PF13578.6 gi|313126700|ref|YP_004036970.1| - 1 10.4 3.7 2.2 9.4 0.7 2.2 1 1 0 2 2 2 0 Methyltransferase domain ABC_tran_CTD PF16326.5 gi|313126700|ref|YP_004036970.1| - 1.1 9.6 10.1 0.15 12.4 4.4 2.4 2 1 1 3 3 3 0 ABC transporter C-terminal domain CHAT PF12770.7 gi|313126702|ref|YP_004036972.1| - 0.088 12.2 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 CHAT domain DUF218 PF02698.17 gi|313126704|ref|YP_004036974.1| - 3.7e-22 78.7 0.0 4.6e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 DUF218 domain Peripla_BP_2 PF01497.18 gi|313126705|ref|YP_004036975.1| - 1.8e-13 50.7 0.1 2.5e-13 50.2 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Aminotran_1_2 PF00155.21 gi|313126706|ref|YP_004036976.1| - 8.2e-71 239.1 0.0 9.2e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|313126706|ref|YP_004036976.1| - 0.0012 17.9 0.0 0.0019 17.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|313126706|ref|YP_004036976.1| - 0.0067 15.7 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase AsnC_trans_reg PF01037.21 gi|313126707|ref|YP_004036977.1| - 5.8e-18 64.6 0.1 1.2e-17 63.6 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|313126707|ref|YP_004036977.1| - 3.9e-09 35.9 0.2 8.2e-09 34.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313126707|ref|YP_004036977.1| - 6.9e-06 25.8 3.0 1.2e-05 25.0 1.3 2.2 2 1 1 3 3 3 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|313126707|ref|YP_004036977.1| - 4.5e-05 23.3 0.1 9.7e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313126707|ref|YP_004036977.1| - 0.00014 21.6 0.1 0.00029 20.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|313126707|ref|YP_004036977.1| - 0.00027 21.0 0.8 0.00048 20.2 0.8 1.4 1 0 0 1 1 1 1 DprA winged helix domain TFIIE_alpha PF02002.17 gi|313126707|ref|YP_004036977.1| - 0.0033 17.3 0.3 0.0051 16.7 0.3 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|313126707|ref|YP_004036977.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 MarR family Streptin-Immun PF11083.8 gi|313126707|ref|YP_004036977.1| - 0.047 14.1 0.0 0.083 13.3 0.0 1.4 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein SelB-wing_2 PF09106.11 gi|313126707|ref|YP_004036977.1| - 0.072 13.3 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_Crp_2 PF13545.6 gi|313126707|ref|YP_004036977.1| - 0.087 12.8 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|313126707|ref|YP_004036977.1| - 0.1 12.1 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix TrmB PF01978.19 gi|313126707|ref|YP_004036977.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Utp13 PF08625.11 gi|313126707|ref|YP_004036977.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Utp13 specific WD40 associated domain DUF2621 PF11084.8 gi|313126707|ref|YP_004036977.1| - 0.13 12.2 0.1 0.45 10.5 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2621) Gp_dh_C PF02800.20 gi|313126707|ref|YP_004036977.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.5 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RPA_C PF08784.11 gi|313126707|ref|YP_004036977.1| - 0.19 12.4 0.0 0.41 11.3 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal SBP_bac_11 PF13531.6 gi|313126708|ref|YP_004036978.1| - 2.2e-27 96.3 0.2 2.7e-27 96.0 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313126708|ref|YP_004036978.1| - 5.7e-05 23.2 1.3 0.0016 18.5 0.4 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|313126708|ref|YP_004036978.1| - 0.13 11.7 0.2 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|313126709|ref|YP_004036979.1| - 1.3e-16 60.9 10.8 1.3e-16 60.9 10.8 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4149 PF13664.6 gi|313126709|ref|YP_004036979.1| - 0.39 11.1 5.8 0.094 13.0 0.4 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4149) ABC_tran PF00005.27 gi|313126710|ref|YP_004036980.1| - 2.8e-30 105.6 0.0 4.4e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126710|ref|YP_004036980.1| - 6.6e-07 29.4 0.1 0.0092 15.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|313126710|ref|YP_004036980.1| - 2.6e-05 24.3 0.4 7.4e-05 22.8 0.4 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|313126710|ref|YP_004036980.1| - 0.002 17.6 0.0 2 7.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313126710|ref|YP_004036980.1| - 0.0029 18.0 0.1 0.0059 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|313126710|ref|YP_004036980.1| - 0.008 15.5 0.1 0.58 9.4 0.0 2.8 2 1 1 3 3 3 1 Zeta toxin AAA_29 PF13555.6 gi|313126710|ref|YP_004036980.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|313126710|ref|YP_004036980.1| - 0.015 15.6 0.0 0.034 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|313126710|ref|YP_004036980.1| - 0.049 13.5 0.1 0.1 12.5 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 gi|313126710|ref|YP_004036980.1| - 0.058 13.1 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313126710|ref|YP_004036980.1| - 0.17 11.9 0.3 5.8 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BatA PF07584.11 gi|313126712|ref|YP_004036982.1| - 1e-18 67.5 4.5 1.9e-18 66.6 4.5 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|313126712|ref|YP_004036982.1| - 2.1e-05 25.1 0.1 5.8e-05 23.7 0.1 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4714 PF15833.5 gi|313126712|ref|YP_004036982.1| - 0.068 13.1 0.3 0.14 12.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4714) DUF58 PF01882.18 gi|313126712|ref|YP_004036982.1| - 0.11 12.7 0.3 0.4 11.0 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF58 VWA PF00092.28 gi|313126713|ref|YP_004036983.1| - 1.5e-14 54.6 0.0 6.8e-11 42.7 0.0 2.7 2 1 0 3 3 3 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|313126713|ref|YP_004036983.1| - 8.4e-13 48.9 0.0 1.2e-11 45.1 0.0 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|313126713|ref|YP_004036983.1| - 8.1e-12 45.3 0.0 2.1e-11 44.0 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|313126713|ref|YP_004036983.1| - 3.4e-07 29.9 0.0 6.8e-05 22.4 0.0 2.4 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein GATase1_like PF07090.11 gi|313126713|ref|YP_004036983.1| - 0.0064 16.0 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 1 Putative glutamine amidotransferase Big_3_5 PF16640.5 gi|313126713|ref|YP_004036983.1| - 0.014 15.6 3.0 0.014 15.6 3.0 3.1 3 1 0 3 3 3 0 Bacterial Ig-like domain (group 3) CBM60 PF16841.5 gi|313126713|ref|YP_004036983.1| - 0.047 14.1 2.0 0.19 12.2 0.3 2.8 3 0 0 3 3 3 0 Ca-dependent carbohydrate-binding module xylan-binding BatA PF07584.11 gi|313126713|ref|YP_004036983.1| - 0.24 11.8 0.1 0.24 11.8 0.1 2.8 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal PKD PF00801.20 gi|313126713|ref|YP_004036983.1| - 0.28 11.0 3.4 2.7 7.9 0.5 3.5 2 1 0 2 2 2 0 PKD domain Big_7 PF17957.1 gi|313126713|ref|YP_004036983.1| - 2.3 9.1 7.1 5.4 7.9 5.4 2.6 2 0 0 2 2 2 0 Bacterial Ig domain DivIC PF04977.15 gi|313126714|ref|YP_004036984.1| - 4.1e-08 32.9 26.3 0.00053 19.7 0.6 3.8 1 1 4 5 5 5 2 Septum formation initiator Rootletin PF15035.6 gi|313126714|ref|YP_004036984.1| - 5.5e-08 33.1 33.7 9.2e-07 29.1 23.5 2.1 1 1 1 2 2 2 1 Ciliary rootlet component, centrosome cohesion TPR_MLP1_2 PF07926.12 gi|313126714|ref|YP_004036984.1| - 1.3e-07 31.7 33.2 0.0011 19.1 27.1 3.1 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|313126714|ref|YP_004036984.1| - 1.6e-06 27.2 30.4 0.00012 21.1 19.1 2.0 1 1 0 1 1 1 1 Spc7 kinetochore protein GAS PF13851.6 gi|313126714|ref|YP_004036984.1| - 2.3e-06 27.1 30.5 7.2e-05 22.2 18.8 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|313126714|ref|YP_004036984.1| - 3.5e-06 27.1 32.0 0.0075 16.3 16.0 2.5 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IFT57 PF10498.9 gi|313126714|ref|YP_004036984.1| - 1.1e-05 24.7 19.4 2.3e-05 23.5 19.2 1.6 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF4201 PF13870.6 gi|313126714|ref|YP_004036984.1| - 2.2e-05 24.3 26.0 0.00032 20.5 26.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) FlaC_arch PF05377.11 gi|313126714|ref|YP_004036984.1| - 2.7e-05 24.5 24.3 0.0057 17.0 5.8 3.9 2 1 1 3 3 3 2 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|313126714|ref|YP_004036984.1| - 3.4e-05 23.9 19.9 0.00017 21.7 12.6 2.3 1 1 1 2 2 2 1 Laminin Domain II MAD PF05557.13 gi|313126714|ref|YP_004036984.1| - 3.7e-05 22.3 23.9 5.1e-05 21.8 23.9 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein HemX PF04375.14 gi|313126714|ref|YP_004036984.1| - 3.9e-05 23.1 19.8 0.00064 19.1 9.0 2.0 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase DUF1664 PF07889.12 gi|313126714|ref|YP_004036984.1| - 4.1e-05 23.6 16.0 0.029 14.4 6.2 2.8 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) ZapB PF06005.12 gi|313126714|ref|YP_004036984.1| - 4.7e-05 23.7 37.3 0.00017 22.0 11.6 3.2 1 1 2 3 3 2 2 Cell division protein ZapB Mod_r PF07200.13 gi|313126714|ref|YP_004036984.1| - 5.1e-05 23.4 27.3 0.016 15.3 15.1 2.5 1 1 2 3 3 3 1 Modifier of rudimentary (Mod(r)) protein AAA_13 PF13166.6 gi|313126714|ref|YP_004036984.1| - 5.8e-05 22.0 14.2 7.5e-05 21.6 14.2 1.1 1 0 0 1 1 1 1 AAA domain Exonuc_VII_L PF02601.15 gi|313126714|ref|YP_004036984.1| - 6.9e-05 22.6 10.3 9.2e-05 22.1 10.3 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit GOLGA2L5 PF15070.6 gi|313126714|ref|YP_004036984.1| - 7.3e-05 21.6 19.5 9.9e-05 21.2 19.5 1.2 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 EzrA PF06160.12 gi|313126714|ref|YP_004036984.1| - 7.3e-05 21.1 21.4 0.012 13.9 8.5 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA TMF_DNA_bd PF12329.8 gi|313126714|ref|YP_004036984.1| - 9.7e-05 22.3 37.4 0.02 14.9 6.3 3.0 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding DASH_Duo1 PF08651.10 gi|313126714|ref|YP_004036984.1| - 0.0001 22.0 11.0 0.00098 18.9 0.9 2.6 2 1 0 2 2 2 1 DASH complex subunit Duo1 FliJ PF02050.16 gi|313126714|ref|YP_004036984.1| - 0.00011 22.4 19.8 0.00011 22.4 17.5 2.0 1 1 1 2 2 2 1 Flagellar FliJ protein KxDL PF10241.9 gi|313126714|ref|YP_004036984.1| - 0.00013 22.1 20.2 0.0086 16.3 5.3 3.1 1 1 2 3 3 3 2 Uncharacterized conserved protein Atg14 PF10186.9 gi|313126714|ref|YP_004036984.1| - 0.00015 21.0 26.5 0.0028 16.8 13.4 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|313126714|ref|YP_004036984.1| - 0.00019 21.5 26.4 0.001 19.1 4.6 3.8 2 2 1 3 3 3 2 bZIP transcription factor DUF2353 PF09789.9 gi|313126714|ref|YP_004036984.1| - 0.00021 20.7 26.8 0.0083 15.5 18.9 2.1 1 1 1 2 2 2 2 Uncharacterized coiled-coil protein (DUF2353) APG6_N PF17675.1 gi|313126714|ref|YP_004036984.1| - 0.00027 21.5 37.2 0.0019 18.7 24.9 2.1 1 1 1 2 2 2 1 Apg6 coiled-coil region Phage_GP20 PF06810.11 gi|313126714|ref|YP_004036984.1| - 0.00036 20.4 22.6 0.063 13.1 13.5 2.3 1 1 1 2 2 2 2 Phage minor structural protein GP20 ATG16 PF08614.11 gi|313126714|ref|YP_004036984.1| - 0.00039 20.7 35.8 0.00073 19.8 31.0 2.1 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) DUF4407 PF14362.6 gi|313126714|ref|YP_004036984.1| - 0.00063 19.2 21.7 0.068 12.5 14.8 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|313126714|ref|YP_004036984.1| - 0.00074 20.0 25.4 0.0011 19.5 25.4 1.3 1 0 0 1 1 1 1 Fez1 DUF3450 PF11932.8 gi|313126714|ref|YP_004036984.1| - 0.0008 18.8 25.6 0.0047 16.3 11.6 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) MscS_porin PF12795.7 gi|313126714|ref|YP_004036984.1| - 0.00081 19.0 30.4 0.0066 16.0 30.8 2.0 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain Myosin_tail_1 PF01576.19 gi|313126714|ref|YP_004036984.1| - 0.00084 17.3 26.5 0.0011 16.9 26.5 1.0 1 0 0 1 1 1 1 Myosin tail UPF0242 PF06785.11 gi|313126714|ref|YP_004036984.1| - 0.00097 19.3 28.8 0.0022 18.1 25.3 2.0 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0242) N-terminus HMMR_N PF15905.5 gi|313126714|ref|YP_004036984.1| - 0.0011 18.6 26.9 0.004 16.7 11.1 1.9 1 1 1 2 2 2 1 Hyaluronan mediated motility receptor N-terminal Filament PF00038.21 gi|313126714|ref|YP_004036984.1| - 0.0011 18.6 26.7 0.005 16.5 26.7 1.8 1 1 0 1 1 1 1 Intermediate filament protein BLOC1_2 PF10046.9 gi|313126714|ref|YP_004036984.1| - 0.0011 19.2 20.7 0.12 12.7 10.6 2.9 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 KASH_CCD PF14662.6 gi|313126714|ref|YP_004036984.1| - 0.0012 18.8 32.8 0.0033 17.3 32.8 1.7 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH WXG100 PF06013.12 gi|313126714|ref|YP_004036984.1| - 0.0013 18.9 12.1 3.1 8.1 0.1 4.2 2 2 0 3 3 3 0 Proteins of 100 residues with WXG ADIP PF11559.8 gi|313126714|ref|YP_004036984.1| - 0.0015 18.7 31.3 0.14 12.2 15.8 2.2 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding DUF3584 PF12128.8 gi|313126714|ref|YP_004036984.1| - 0.0016 16.0 22.8 0.0022 15.6 22.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) PspA_IM30 PF04012.12 gi|313126714|ref|YP_004036984.1| - 0.0017 18.0 25.6 0.097 12.2 7.2 3.1 1 1 2 3 3 3 1 PspA/IM30 family Tropomyosin_1 PF12718.7 gi|313126714|ref|YP_004036984.1| - 0.0021 18.2 35.8 0.015 15.5 34.5 2.3 1 1 1 2 2 2 2 Tropomyosin like HOOK PF05622.12 gi|313126714|ref|YP_004036984.1| - 0.0022 16.3 19.6 0.0022 16.3 19.6 2.0 1 1 1 2 2 2 2 HOOK protein FPP PF05911.11 gi|313126714|ref|YP_004036984.1| - 0.0024 16.1 31.1 0.064 11.4 18.6 2.0 1 1 1 2 2 2 2 Filament-like plant protein, long coiled-coil PI3K_P85_iSH2 PF16454.5 gi|313126714|ref|YP_004036984.1| - 0.0026 17.4 21.9 1.2 8.8 21.9 3.1 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain PEARLI-4 PF05278.12 gi|313126714|ref|YP_004036984.1| - 0.0026 17.4 12.6 0.0032 17.1 12.0 1.4 1 1 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) Uso1_p115_C PF04871.13 gi|313126714|ref|YP_004036984.1| - 0.003 17.9 31.1 0.078 13.3 19.5 2.3 1 1 1 2 2 2 1 Uso1 / p115 like vesicle tethering protein, C terminal region CEP63 PF17045.5 gi|313126714|ref|YP_004036984.1| - 0.0034 17.3 24.5 0.015 15.2 24.5 1.7 1 1 0 1 1 1 1 Centrosomal protein of 63 kDa Snapin_Pallidin PF14712.6 gi|313126714|ref|YP_004036984.1| - 0.0034 17.7 21.2 0.25 11.8 1.3 3.1 2 1 1 3 3 3 1 Snapin/Pallidin Fib_alpha PF08702.10 gi|313126714|ref|YP_004036984.1| - 0.0038 17.4 17.2 0.0038 17.4 12.1 2.1 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family CCDC144C PF14915.6 gi|313126714|ref|YP_004036984.1| - 0.0051 16.0 28.1 0.074 12.2 27.4 2.1 1 1 1 2 2 2 1 CCDC144C protein coiled-coil region DUF2968 PF11180.8 gi|313126714|ref|YP_004036984.1| - 0.0061 16.2 25.0 0.014 15.1 11.5 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) Prefoldin_2 PF01920.20 gi|313126714|ref|YP_004036984.1| - 0.0072 16.3 32.4 0.071 13.1 4.1 3.5 1 1 2 3 3 3 1 Prefoldin subunit Jnk-SapK_ap_N PF09744.9 gi|313126714|ref|YP_004036984.1| - 0.0079 16.4 32.5 0.036 14.3 23.3 2.2 1 1 1 2 2 2 1 JNK_SAPK-associated protein-1 She9_MDM33 PF05546.11 gi|313126714|ref|YP_004036984.1| - 0.008 16.0 16.7 0.26 11.1 6.5 2.6 1 1 1 2 2 2 1 She9 / Mdm33 family DUF724 PF05266.14 gi|313126714|ref|YP_004036984.1| - 0.0082 16.0 21.1 0.03 14.1 12.3 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF724) Sec34 PF04136.15 gi|313126714|ref|YP_004036984.1| - 0.0089 15.9 6.9 0.0089 15.9 6.9 2.4 1 1 1 2 2 2 1 Sec34-like family Seryl_tRNA_N PF02403.22 gi|313126714|ref|YP_004036984.1| - 0.0098 16.1 23.3 0.2 11.9 11.9 2.4 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Lebercilin PF15619.6 gi|313126714|ref|YP_004036984.1| - 0.011 15.4 31.9 0.02 14.6 31.9 1.4 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease COG2 PF06148.11 gi|313126714|ref|YP_004036984.1| - 0.011 15.8 18.1 0.97 9.5 9.3 3.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 YabA PF06156.13 gi|313126714|ref|YP_004036984.1| - 0.012 16.3 23.3 0.29 11.8 9.3 3.0 1 1 1 2 2 2 0 Initiation control protein YabA Cluap1 PF10234.9 gi|313126714|ref|YP_004036984.1| - 0.012 15.0 24.8 0.014 14.8 11.1 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 GTP-bdg_M PF16360.5 gi|313126714|ref|YP_004036984.1| - 0.012 16.2 17.3 0.03 14.9 0.6 3.3 1 1 2 3 3 3 0 GTP-binding GTPase Middle Region Cnn_1N PF07989.11 gi|313126714|ref|YP_004036984.1| - 0.012 15.7 30.2 0.11 12.6 8.2 3.3 1 1 2 3 3 2 0 Centrosomin N-terminal motif 1 Vps52 PF04129.12 gi|313126714|ref|YP_004036984.1| - 0.013 14.3 7.7 0.19 10.4 2.9 2.0 1 1 1 2 2 2 0 Vps52 / Sac2 family BCAS2 PF05700.11 gi|313126714|ref|YP_004036984.1| - 0.014 15.1 19.5 0.29 10.8 9.9 2.2 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) YscO PF07321.12 gi|313126714|ref|YP_004036984.1| - 0.014 15.3 27.8 0.19 11.7 8.6 2.4 1 1 1 2 2 2 0 Type III secretion protein YscO MctB PF11382.8 gi|313126714|ref|YP_004036984.1| - 0.014 15.1 1.8 0.014 15.1 1.8 3.3 1 1 1 3 3 3 0 Copper transport outer membrane protein, MctB Leu_zip PF15294.6 gi|313126714|ref|YP_004036984.1| - 0.015 14.9 24.8 0.024 14.2 13.3 2.0 1 1 1 2 2 2 0 Leucine zipper LPP PF04728.13 gi|313126714|ref|YP_004036984.1| - 0.017 15.5 14.5 0.55 10.7 2.2 4.2 1 1 3 4 4 4 0 Lipoprotein leucine-zipper Cep57_MT_bd PF06657.13 gi|313126714|ref|YP_004036984.1| - 0.018 15.5 23.6 0.37 11.3 1.9 3.4 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 HAP1_N PF04849.13 gi|313126714|ref|YP_004036984.1| - 0.018 14.3 32.3 0.56 9.4 32.3 2.0 1 1 0 1 1 1 0 HAP1 N-terminal conserved region NPV_P10 PF05531.12 gi|313126714|ref|YP_004036984.1| - 0.019 15.4 15.0 0.31 11.5 3.1 3.2 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein MCPsignal PF00015.21 gi|313126714|ref|YP_004036984.1| - 0.02 14.7 2.8 0.02 14.7 2.8 2.0 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FAM76 PF16046.5 gi|313126714|ref|YP_004036984.1| - 0.022 14.1 13.4 0.038 13.4 13.4 1.3 1 0 0 1 1 1 0 FAM76 protein SlyX PF04102.12 gi|313126714|ref|YP_004036984.1| - 0.023 15.3 3.7 0.023 15.3 3.7 3.8 1 1 1 3 3 3 0 SlyX TMPIT PF07851.13 gi|313126714|ref|YP_004036984.1| - 0.023 13.9 17.9 0.35 10.1 7.2 2.1 1 1 1 2 2 2 0 TMPIT-like protein FUSC PF04632.12 gi|313126714|ref|YP_004036984.1| - 0.025 13.1 9.4 0.033 12.7 9.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family APG17 PF04108.12 gi|313126714|ref|YP_004036984.1| - 0.026 13.7 17.8 0.019 14.1 8.2 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 FapA PF03961.13 gi|313126714|ref|YP_004036984.1| - 0.027 13.1 19.7 0.36 9.4 11.2 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A OmpH PF03938.14 gi|313126714|ref|YP_004036984.1| - 0.028 14.8 24.9 0.4 11.0 12.9 2.6 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) GIT_CC PF16559.5 gi|313126714|ref|YP_004036984.1| - 0.03 14.2 3.6 0.03 14.2 3.6 3.2 1 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Med9 PF07544.13 gi|313126714|ref|YP_004036984.1| - 0.03 14.4 20.9 0.051 13.7 5.0 3.4 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 GP41 PF00517.17 gi|313126714|ref|YP_004036984.1| - 0.034 14.1 2.6 0.043 13.7 2.6 1.2 1 0 0 1 1 1 0 Retroviral envelope protein Spectrin PF00435.21 gi|313126714|ref|YP_004036984.1| - 0.036 14.5 22.9 0.17 12.4 15.5 2.2 1 1 1 2 2 2 0 Spectrin repeat JIP_LZII PF16471.5 gi|313126714|ref|YP_004036984.1| - 0.038 14.2 3.6 0.038 14.2 3.6 3.7 2 1 1 3 3 2 0 JNK-interacting protein leucine zipper II TolA_bind_tri PF16331.5 gi|313126714|ref|YP_004036984.1| - 0.039 14.0 28.9 0.28 11.3 7.3 3.3 1 1 2 3 3 3 0 TolA binding protein trimerisation HrpB7 PF09486.10 gi|313126714|ref|YP_004036984.1| - 0.039 14.3 22.7 2.8 8.3 16.5 3.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF812 PF05667.11 gi|313126714|ref|YP_004036984.1| - 0.04 12.8 25.6 0.53 9.1 25.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF812) ERM PF00769.19 gi|313126714|ref|YP_004036984.1| - 0.04 13.7 31.3 0.17 11.7 17.5 2.1 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF16 PF01519.16 gi|313126714|ref|YP_004036984.1| - 0.041 14.4 18.9 0.26 11.8 10.4 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 HIP1_clath_bdg PF16515.5 gi|313126714|ref|YP_004036984.1| - 0.041 14.5 29.5 0.11 13.2 17.7 2.7 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 THOC7 PF05615.13 gi|313126714|ref|YP_004036984.1| - 0.043 14.1 28.5 3.7 7.8 15.6 3.0 1 1 2 3 3 3 0 Tho complex subunit 7 bZIP_2 PF07716.15 gi|313126714|ref|YP_004036984.1| - 0.045 13.8 0.7 0.045 13.8 0.7 4.7 3 1 2 5 5 4 0 Basic region leucine zipper DUF641 PF04859.12 gi|313126714|ref|YP_004036984.1| - 0.046 14.1 23.6 0.087 13.2 8.9 3.1 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) DUF5082 PF16888.5 gi|313126714|ref|YP_004036984.1| - 0.052 13.8 20.6 1 9.6 11.3 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF5082) DUF745 PF05335.13 gi|313126714|ref|YP_004036984.1| - 0.055 13.2 15.6 0.24 11.1 14.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF745) COG6 PF06419.11 gi|313126714|ref|YP_004036984.1| - 0.056 11.7 18.8 0.23 9.6 6.2 2.1 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Fmp27_WPPW PF10359.9 gi|313126714|ref|YP_004036984.1| - 0.063 12.1 20.8 0.8 8.5 20.8 2.1 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Golgin_A5 PF09787.9 gi|313126714|ref|YP_004036984.1| - 0.068 12.6 28.8 0.1 12.1 26.8 1.8 1 1 1 2 2 2 0 Golgin subfamily A member 5 Tropomyosin PF00261.20 gi|313126714|ref|YP_004036984.1| - 0.069 12.5 32.0 0.038 13.4 27.4 2.1 1 1 1 2 2 2 0 Tropomyosin RasGAP_C PF03836.15 gi|313126714|ref|YP_004036984.1| - 0.073 13.2 16.7 3.1 7.9 6.5 2.7 1 1 1 2 2 2 0 RasGAP C-terminus zf-CpG_bind_C PF12269.8 gi|313126714|ref|YP_004036984.1| - 0.073 12.8 19.8 0.23 11.2 10.9 2.1 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain CLZ PF16526.5 gi|313126714|ref|YP_004036984.1| - 0.076 13.4 28.0 0.22 11.9 1.5 4.0 1 1 3 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF948 PF06103.11 gi|313126714|ref|YP_004036984.1| - 0.092 13.0 15.0 5.9 7.2 6.0 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Sec2p PF06428.11 gi|313126714|ref|YP_004036984.1| - 0.098 12.6 31.5 0.32 11.0 4.9 3.6 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p XhlA PF10779.9 gi|313126714|ref|YP_004036984.1| - 0.1 12.8 28.3 0.79 10.0 7.3 3.5 2 1 1 3 3 3 0 Haemolysin XhlA DUF4446 PF14584.6 gi|313126714|ref|YP_004036984.1| - 0.11 12.5 16.5 1.6 8.7 0.4 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) DUF4686 PF15742.5 gi|313126714|ref|YP_004036984.1| - 0.12 11.5 33.8 0.53 9.4 21.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4686) Syntaxin-6_N PF09177.11 gi|313126714|ref|YP_004036984.1| - 0.12 13.0 24.3 8.5 7.0 15.1 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Oleosin PF01277.17 gi|313126714|ref|YP_004036984.1| - 0.12 12.1 0.7 3.9 7.3 0.0 2.5 1 1 1 2 2 2 0 Oleosin Nup54 PF13874.6 gi|313126714|ref|YP_004036984.1| - 0.13 12.3 20.1 0.27 11.4 4.4 2.7 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 DUF4618 PF15397.6 gi|313126714|ref|YP_004036984.1| - 0.13 11.6 23.8 18 4.6 23.8 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) DUF1043 PF06295.12 gi|313126714|ref|YP_004036984.1| - 0.14 12.2 18.9 1.4 8.9 9.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1043) Swi5 PF07061.11 gi|313126714|ref|YP_004036984.1| - 0.14 12.2 23.3 0.46 10.6 3.7 3.6 1 1 2 3 3 3 0 Swi5 TSC22 PF01166.18 gi|313126714|ref|YP_004036984.1| - 0.15 12.4 29.9 0.2 12.0 6.1 4.9 1 1 4 5 5 4 0 TSC-22/dip/bun family Occludin_ELL PF07303.13 gi|313126714|ref|YP_004036984.1| - 0.15 12.8 11.3 5.6 7.8 3.7 2.6 1 1 1 2 2 2 0 Occludin homology domain SOGA PF11365.8 gi|313126714|ref|YP_004036984.1| - 0.15 13.2 23.9 0.14 13.3 14.4 3.0 1 1 2 3 3 2 0 Protein SOGA SHE3 PF17078.5 gi|313126714|ref|YP_004036984.1| - 0.15 11.7 22.4 2.5 7.8 13.1 2.1 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Prominin PF05478.11 gi|313126714|ref|YP_004036984.1| - 0.16 9.9 15.1 0.1 10.5 6.4 1.9 1 1 1 2 2 2 0 Prominin YkyA PF10368.9 gi|313126714|ref|YP_004036984.1| - 0.16 11.6 22.7 0.51 10.0 15.7 2.3 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Ploopntkinase3 PF18751.1 gi|313126714|ref|YP_004036984.1| - 0.17 11.8 0.9 0.25 11.2 0.3 1.6 2 0 0 2 2 1 0 P-loop Nucleotide Kinase3 Spc29 PF17082.5 gi|313126714|ref|YP_004036984.1| - 0.17 11.7 16.9 0.67 9.7 6.7 2.4 1 1 1 2 2 2 0 Spindle Pole Component 29 TMF_TATA_bd PF12325.8 gi|313126714|ref|YP_004036984.1| - 0.17 12.1 33.6 1.1 9.5 23.9 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4665 PF15679.5 gi|313126714|ref|YP_004036984.1| - 0.17 12.5 9.4 0.1 13.2 1.3 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4665) Rab5-bind PF09311.11 gi|313126714|ref|YP_004036984.1| - 0.18 11.1 27.4 0.075 12.4 15.4 2.0 1 1 1 2 2 2 0 Rabaptin-like protein AIP3 PF03915.13 gi|313126714|ref|YP_004036984.1| - 0.19 10.8 20.7 0.61 9.1 20.7 1.6 1 1 0 1 1 1 0 Actin interacting protein 3 BRE1 PF08647.11 gi|313126714|ref|YP_004036984.1| - 0.2 11.8 26.3 0.12 12.4 15.5 2.1 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase Macoilin PF09726.9 gi|313126714|ref|YP_004036984.1| - 0.2 10.1 25.8 0.69 8.4 6.7 2.0 1 1 1 2 2 2 0 Macoilin family DHR10 PF18595.1 gi|313126714|ref|YP_004036984.1| - 0.22 11.6 35.5 0.054 13.5 10.6 3.6 1 1 1 3 3 3 0 Designed helical repeat protein 10 domain PI_PP_I PF18363.1 gi|313126714|ref|YP_004036984.1| - 0.23 11.7 4.0 1.4 9.1 0.8 2.3 1 1 1 2 2 2 0 Phosphoinositide phosphatase insertion domain Baculo_PEP_C PF04513.12 gi|313126714|ref|YP_004036984.1| - 0.24 11.5 14.8 14 5.7 14.8 2.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HAUS-augmin3 PF14932.6 gi|313126714|ref|YP_004036984.1| - 0.24 11.0 26.7 2.4 7.7 13.3 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 GrpE PF01025.19 gi|313126714|ref|YP_004036984.1| - 0.25 11.0 26.7 1.1e+02 2.4 17.5 3.0 1 1 1 2 2 2 0 GrpE Flagellin_C PF00700.21 gi|313126714|ref|YP_004036984.1| - 0.26 11.7 10.5 0.19 12.1 0.9 3.4 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region Vps5 PF09325.10 gi|313126714|ref|YP_004036984.1| - 0.29 10.7 16.9 0.36 10.3 8.6 2.4 1 1 0 2 2 2 0 Vps5 C terminal like CENP-H PF05837.12 gi|313126714|ref|YP_004036984.1| - 0.3 11.5 27.1 0.84 10.1 10.2 2.6 1 1 1 2 2 2 0 Centromere protein H (CENP-H) DUF4200 PF13863.6 gi|313126714|ref|YP_004036984.1| - 0.3 11.5 30.1 0.76 10.2 19.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF4763 PF15960.5 gi|313126714|ref|YP_004036984.1| - 0.32 10.3 24.9 0.93 8.7 12.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) RmuC PF02646.16 gi|313126714|ref|YP_004036984.1| - 0.32 10.1 19.0 1.7 7.7 8.0 2.3 1 1 1 2 2 2 0 RmuC family DivIVA PF05103.13 gi|313126714|ref|YP_004036984.1| - 0.34 11.0 22.3 0.47 10.5 6.0 2.7 1 1 1 2 2 2 0 DivIVA protein DUF4795 PF16043.5 gi|313126714|ref|YP_004036984.1| - 0.35 10.5 23.1 0.74 9.4 2.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Allexi_40kDa PF05549.11 gi|313126714|ref|YP_004036984.1| - 0.35 10.4 12.1 0.9 9.0 4.6 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF4472 PF14739.6 gi|313126714|ref|YP_004036984.1| - 0.37 11.5 25.1 1.4 9.7 3.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) BST2 PF16716.5 gi|313126714|ref|YP_004036984.1| - 0.38 11.4 27.1 1 10.0 14.4 3.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Wtap PF17098.5 gi|313126714|ref|YP_004036984.1| - 0.39 10.6 26.5 31 4.4 5.0 3.0 1 1 1 2 2 2 0 WTAP/Mum2p family Cauli_AT PF03233.13 gi|313126714|ref|YP_004036984.1| - 0.4 10.6 15.5 0.43 10.5 8.1 2.1 1 1 1 2 2 2 0 Aphid transmission protein DUF3552 PF12072.8 gi|313126714|ref|YP_004036984.1| - 0.45 9.9 34.2 2.5 7.4 29.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) UPF0449 PF15136.6 gi|313126714|ref|YP_004036984.1| - 0.48 10.9 26.1 1.8 9.1 2.6 3.6 1 1 1 3 3 3 0 Uncharacterised protein family UPF0449 FH2 PF02181.23 gi|313126714|ref|YP_004036984.1| - 0.51 9.4 17.6 1.6 7.8 13.5 2.7 1 1 1 2 2 2 0 Formin Homology 2 Domain FliD_N PF02465.18 gi|313126714|ref|YP_004036984.1| - 0.55 11.0 13.0 2 9.2 5.1 2.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Prefoldin PF02996.17 gi|313126714|ref|YP_004036984.1| - 0.57 10.1 23.5 6.5 6.7 4.1 3.8 1 1 1 2 2 1 0 Prefoldin subunit CALCOCO1 PF07888.11 gi|313126714|ref|YP_004036984.1| - 0.64 8.8 29.8 4.1 6.1 19.2 2.0 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Spc24 PF08286.11 gi|313126714|ref|YP_004036984.1| - 0.65 10.3 31.7 2.1 8.6 5.9 3.3 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Cep57_CLD_2 PF14197.6 gi|313126714|ref|YP_004036984.1| - 0.65 10.1 38.1 39 4.4 18.3 3.7 1 1 2 3 3 2 0 Centrosome localisation domain of PPC89 Taxilin PF09728.9 gi|313126714|ref|YP_004036984.1| - 0.69 9.0 27.3 0.49 9.5 9.9 2.1 1 1 1 2 2 2 0 Myosin-like coiled-coil protein KfrA_N PF11740.8 gi|313126714|ref|YP_004036984.1| - 0.7 10.6 27.0 2.9 8.6 2.7 3.3 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term Hormone_1 PF00103.20 gi|313126714|ref|YP_004036984.1| - 0.71 9.6 9.6 1 9.1 3.9 2.1 1 1 1 2 2 2 0 Somatotropin hormone family DUF2730 PF10805.8 gi|313126714|ref|YP_004036984.1| - 0.76 9.9 16.8 1.4 9.1 6.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) AATF-Che1 PF13339.6 gi|313126714|ref|YP_004036984.1| - 0.8 10.4 20.2 0.81 10.4 11.1 2.1 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Fzo_mitofusin PF04799.13 gi|313126714|ref|YP_004036984.1| - 0.83 9.2 21.1 2.2 7.8 8.5 2.9 1 1 2 3 3 3 0 fzo-like conserved region Tho2 PF11262.8 gi|313126714|ref|YP_004036984.1| - 0.83 8.8 18.8 1.5 8.0 4.9 2.1 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 MbeD_MobD PF04899.12 gi|313126714|ref|YP_004036984.1| - 0.83 9.8 11.9 4.8 7.4 2.3 3.0 2 1 1 3 3 2 0 MbeD/MobD like End3 PF12761.7 gi|313126714|ref|YP_004036984.1| - 0.86 9.7 24.9 6 7.0 22.7 2.6 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 GCN5L1 PF06320.13 gi|313126714|ref|YP_004036984.1| - 0.86 9.8 16.8 0.25 11.5 8.4 2.2 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Halogen_Hydrol PF10112.9 gi|313126714|ref|YP_004036984.1| - 0.87 9.6 14.2 3.1 7.8 0.1 2.7 1 1 1 3 3 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein HALZ PF02183.18 gi|313126714|ref|YP_004036984.1| - 0.89 9.8 23.7 2.2 8.6 4.5 4.2 2 2 2 4 4 4 0 Homeobox associated leucine zipper Csm1_N PF18504.1 gi|313126714|ref|YP_004036984.1| - 0.94 9.9 30.3 0.13 12.6 9.1 3.3 1 1 2 3 3 2 0 Csm1 N-terminal domain JAKMIP_CC3 PF16034.5 gi|313126714|ref|YP_004036984.1| - 1.1 9.2 27.4 16 5.4 27.4 2.1 1 1 0 1 1 1 0 JAKMIP CC3 domain DUF2203 PF09969.9 gi|313126714|ref|YP_004036984.1| - 1.3 9.8 16.5 2.1e+02 2.6 16.5 2.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) LXG PF04740.12 gi|313126714|ref|YP_004036984.1| - 1.3 8.7 17.1 10 5.7 1.8 3.0 1 1 0 2 2 2 0 LXG domain of WXG superfamily Phlebovirus_NSM PF07246.11 gi|313126714|ref|YP_004036984.1| - 1.3 8.3 17.4 0.064 12.6 0.9 2.3 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M DUF773 PF05600.12 gi|313126714|ref|YP_004036984.1| - 1.4 7.5 19.9 0.52 9.0 11.7 2.0 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 bZIP_Maf PF03131.17 gi|313126714|ref|YP_004036984.1| - 1.4 9.4 26.4 0.26 11.8 4.0 3.5 1 1 1 3 3 3 0 bZIP Maf transcription factor FmiP_Thoc5 PF09766.9 gi|313126714|ref|YP_004036984.1| - 1.4 8.1 22.4 0.78 9.0 4.1 2.8 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 T3SSipB PF16535.5 gi|313126714|ref|YP_004036984.1| - 1.6 9.2 13.6 0.86 10.1 8.4 2.1 1 1 1 2 2 2 0 Type III cell invasion protein SipB Nup88 PF10168.9 gi|313126714|ref|YP_004036984.1| - 1.6 6.5 19.0 0.41 8.4 13.7 1.5 1 1 1 2 2 2 0 Nuclear pore component DUF5339 PF17274.2 gi|313126714|ref|YP_004036984.1| - 1.6 9.7 7.4 1.5 9.7 2.7 2.9 1 1 2 3 3 1 0 Family of unknown function (DUF5339) DUF3847 PF12958.7 gi|313126714|ref|YP_004036984.1| - 1.6 8.9 22.9 0.32 11.2 5.3 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3847) PRKG1_interact PF15898.5 gi|313126714|ref|YP_004036984.1| - 1.8 9.5 28.5 85 4.1 0.4 2.8 1 1 1 2 2 1 0 cGMP-dependent protein kinase interacting domain HR1 PF02185.16 gi|313126714|ref|YP_004036984.1| - 1.8 8.7 27.1 2.1 8.5 7.0 3.2 2 1 1 3 3 3 0 Hr1 repeat Tweety PF04906.13 gi|313126714|ref|YP_004036984.1| - 1.9 7.0 8.5 0.85 8.2 3.7 2.0 1 1 1 2 2 2 0 Tweety RPW8 PF05659.11 gi|313126714|ref|YP_004036984.1| - 2.1 8.0 12.4 2.3 7.9 0.5 3.1 1 1 2 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DMPK_coil PF08826.10 gi|313126714|ref|YP_004036984.1| - 2.3 8.4 29.5 0.91 9.7 12.7 4.0 1 1 3 4 4 3 0 DMPK coiled coil domain like CC2-LZ PF16516.5 gi|313126714|ref|YP_004036984.1| - 2.4 8.6 23.8 2.2 8.7 1.5 3.3 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator kleA_kleC PF17383.2 gi|313126714|ref|YP_004036984.1| - 2.5 8.5 15.5 6.6 7.1 4.7 3.6 1 1 3 4 4 3 0 Uncharacterized KorC regulated protein A USP8_interact PF08941.10 gi|313126714|ref|YP_004036984.1| - 2.6 7.9 11.6 4 7.2 4.3 2.3 1 1 1 2 2 2 0 USP8 interacting DUF4140 PF13600.6 gi|313126714|ref|YP_004036984.1| - 2.7 8.5 27.6 1.8e+04 -12.1 27.6 3.7 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) Cob_adeno_trans PF01923.18 gi|313126714|ref|YP_004036984.1| - 2.8 8.1 10.9 55 3.9 11.0 2.3 1 1 0 1 1 1 0 Cobalamin adenosyltransferase Fungal_TACC PF12709.7 gi|313126714|ref|YP_004036984.1| - 2.9 8.4 21.9 0.34 11.4 1.5 3.6 1 1 2 3 3 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins DASH_Dam1 PF08653.10 gi|313126714|ref|YP_004036984.1| - 2.9 7.8 13.6 12 5.7 0.3 4.3 2 2 4 6 6 5 0 DASH complex subunit Dam1 SKA1 PF07160.12 gi|313126714|ref|YP_004036984.1| - 3 7.6 15.5 19 5.0 15.1 2.1 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Ax_dynein_light PF10211.9 gi|313126714|ref|YP_004036984.1| - 3.3 7.6 29.5 0.35 10.8 7.3 3.1 1 1 1 2 2 1 0 Axonemal dynein light chain DLP_helical PF18709.1 gi|313126714|ref|YP_004036984.1| - 3.6 6.7 21.2 2.5 7.2 5.7 3.0 1 1 3 4 4 4 0 Dynamin-like helical domain Hemagglutinin PF00509.18 gi|313126714|ref|YP_004036984.1| - 3.6 5.9 10.5 0.83 8.0 5.8 2.0 1 1 1 2 2 2 0 Haemagglutinin Tup_N PF08581.10 gi|313126714|ref|YP_004036984.1| - 3.8 7.9 21.3 1.9 8.9 2.1 3.0 1 1 2 3 3 3 0 Tup N-terminal Med21 PF11221.8 gi|313126714|ref|YP_004036984.1| - 4 7.7 30.2 2.9 8.1 3.9 3.2 2 1 1 3 3 3 0 Subunit 21 of Mediator complex HCMV_UL139 PF12507.8 gi|313126714|ref|YP_004036984.1| - 4.1 7.8 11.4 2.2 8.7 2.6 2.9 1 1 1 2 2 2 0 Human Cytomegalovirus UL139 protein V_ATPase_I PF01496.19 gi|313126714|ref|YP_004036984.1| - 4.1 5.2 17.7 8.8 4.1 17.7 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3053 PF11254.8 gi|313126714|ref|YP_004036984.1| - 4.2 6.9 14.0 7.5 6.1 4.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) KELK PF15796.5 gi|313126714|ref|YP_004036984.1| - 4.2 7.9 32.3 1.7 9.2 4.5 3.0 1 1 2 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase HAUS6_N PF14661.6 gi|313126714|ref|YP_004036984.1| - 4.6 6.8 20.4 7.2 6.1 12.6 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DegS PF05384.11 gi|313126714|ref|YP_004036984.1| - 5.1 6.6 26.5 24 4.4 16.7 2.7 1 1 1 2 2 2 0 Sensor protein DegS CENP-K PF11802.8 gi|313126714|ref|YP_004036984.1| - 5.7 6.4 23.0 9.6 5.7 12.9 2.0 1 1 1 2 2 2 0 Centromere-associated protein K Bacillus_HBL PF05791.11 gi|313126714|ref|YP_004036984.1| - 6.3 6.6 12.9 2.7e+02 1.3 12.9 2.3 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) BMFP PF04380.13 gi|313126714|ref|YP_004036984.1| - 6.3 7.4 21.9 0.75 10.3 5.0 4.2 2 2 2 4 4 3 0 Membrane fusogenic activity LapA_dom PF06305.11 gi|313126714|ref|YP_004036984.1| - 6.3 6.7 17.9 0.31 10.9 0.2 3.8 3 2 1 4 4 3 0 Lipopolysaccharide assembly protein A domain AAA_27 PF13514.6 gi|313126714|ref|YP_004036984.1| - 7.3 6.1 11.7 10 5.7 2.4 2.6 1 1 2 3 3 3 0 AAA domain CREPT PF16566.5 gi|313126714|ref|YP_004036984.1| - 7.4 6.7 20.9 29 4.8 12.9 2.7 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Herpes_UL6 PF01763.16 gi|313126714|ref|YP_004036984.1| - 7.7 4.9 16.1 3 6.3 4.5 2.1 1 1 1 2 2 2 0 Herpesvirus UL6 like ALMT PF11744.8 gi|313126714|ref|YP_004036984.1| - 7.9 5.2 8.9 11 4.8 8.9 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF4337 PF14235.6 gi|313126714|ref|YP_004036984.1| - 8.7 6.4 19.1 3.7 7.6 9.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Sporozoite_P67 PF05642.11 gi|313126715|ref|YP_004036985.1| - 0.31 9.1 7.7 0.45 8.5 0.1 2.0 1 1 0 2 2 2 0 Sporozoite P67 surface antigen AAA_3 PF07726.11 gi|313126716|ref|YP_004036986.1| - 4.6e-61 204.4 0.2 8.2e-61 203.6 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|313126716|ref|YP_004036986.1| - 3.8e-19 68.3 0.6 7.8e-19 67.3 0.6 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|313126716|ref|YP_004036986.1| - 1.7e-11 44.3 0.0 3e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|313126716|ref|YP_004036986.1| - 3.4e-07 29.6 0.0 6e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|313126716|ref|YP_004036986.1| - 1.7e-05 25.3 0.0 3.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313126716|ref|YP_004036986.1| - 0.00095 18.9 0.0 0.0082 15.9 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|313126716|ref|YP_004036986.1| - 0.0038 17.0 0.0 0.033 14.0 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|313126716|ref|YP_004036986.1| - 0.024 14.0 0.0 0.35 10.2 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|313126716|ref|YP_004036986.1| - 0.087 13.2 0.0 8.6 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF58 PF01882.18 gi|313126717|ref|YP_004036987.1| - 6.5e-20 71.2 0.2 2e-19 69.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|313126717|ref|YP_004036987.1| - 2.4e-05 24.9 0.1 0.0001 22.9 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|313126717|ref|YP_004036987.1| - 0.00026 20.5 0.1 0.009 15.4 0.1 2.4 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein BtrH_N PF14399.6 gi|313126717|ref|YP_004036987.1| - 0.1 12.8 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal EamA PF00892.20 gi|313126719|ref|YP_004036989.1| - 4e-11 43.2 14.9 4.6e-11 43.0 14.9 1.1 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|313126719|ref|YP_004036989.1| - 0.00013 21.2 5.8 0.00013 21.2 5.8 1.5 1 1 1 2 2 2 1 Magnesium transporter NIPA TMEM234 PF10639.9 gi|313126719|ref|YP_004036989.1| - 0.0099 15.9 4.2 0.017 15.1 4.2 1.5 1 1 0 1 1 1 1 Putative transmembrane family 234 AhpC-TSA PF00578.21 gi|313126720|ref|YP_004036990.1| - 2.7e-15 56.4 0.0 3.7e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313126720|ref|YP_004036990.1| - 1.9e-11 43.9 0.0 2.4e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|313126720|ref|YP_004036990.1| - 0.0073 16.8 0.4 0.017 15.6 0.3 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain TatD_DNase PF01026.21 gi|313126720|ref|YP_004036990.1| - 0.13 11.7 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase RNA_binding PF01877.17 gi|313126721|ref|YP_004036991.1| - 5.3e-33 113.8 0.5 6.8e-33 113.5 0.5 1.1 1 0 0 1 1 1 1 RNA binding FragX_IP PF05994.11 gi|313126721|ref|YP_004036991.1| - 0.12 10.5 0.1 0.13 10.3 0.1 1.1 1 0 0 1 1 1 0 Cytoplasmic Fragile-X interacting family DUF1918 PF08940.11 gi|313126722|ref|YP_004036992.1| - 0.00041 19.9 0.1 0.0005 19.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) NUDIX PF00293.28 gi|313126723|ref|YP_004036993.1| - 9.1e-18 64.6 0.1 1.4e-17 63.9 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain ANTH PF07651.16 gi|313126723|ref|YP_004036993.1| - 0.12 11.3 0.1 0.15 11.0 0.1 1.1 1 0 0 1 1 1 0 ANTH domain Nudix_N_2 PF14803.6 gi|313126724|ref|YP_004036994.1| - 3.5e-05 23.6 0.7 0.067 13.1 0.0 2.3 2 0 0 2 2 2 2 Nudix N-terminal zf_UBZ PF18439.1 gi|313126724|ref|YP_004036994.1| - 0.00097 18.7 0.2 0.39 10.3 0.1 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|313126724|ref|YP_004036994.1| - 0.0014 18.2 1.1 0.81 9.5 0.1 2.7 3 0 0 3 3 3 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|313126724|ref|YP_004036994.1| - 0.0017 18.4 1.3 0.74 10.0 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-Mss51 PF13824.6 gi|313126724|ref|YP_004036994.1| - 0.0059 16.7 1.2 0.48 10.6 0.3 2.1 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|313126724|ref|YP_004036994.1| - 0.0069 15.8 1.3 0.32 10.5 0.3 2.3 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|313126724|ref|YP_004036994.1| - 0.0084 16.0 0.1 0.05 13.6 0.1 1.9 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.6 gi|313126724|ref|YP_004036994.1| - 0.014 15.1 1.3 0.61 9.9 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|313126724|ref|YP_004036994.1| - 0.021 14.9 0.2 3.6 7.6 0.0 2.1 2 0 0 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|313126724|ref|YP_004036994.1| - 0.022 14.7 0.7 1.1 9.2 0.7 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|313126724|ref|YP_004036994.1| - 0.026 14.6 1.3 0.27 11.3 1.3 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-trcl PF13451.6 gi|313126724|ref|YP_004036994.1| - 0.029 14.3 1.6 0.07 13.0 0.3 1.9 2 0 0 2 2 2 0 Probable zinc-ribbon domain Lar_restr_allev PF14354.6 gi|313126724|ref|YP_004036994.1| - 0.033 14.6 0.3 0.071 13.5 0.3 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_9 PF14369.6 gi|313126724|ref|YP_004036994.1| - 0.034 14.4 2.4 0.48 10.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Terminase_GpA PF05876.12 gi|313126724|ref|YP_004036994.1| - 0.038 12.6 0.0 0.042 12.4 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) ADK_lid PF05191.14 gi|313126724|ref|YP_004036994.1| - 0.042 13.8 0.7 5.8 7.0 0.0 2.3 2 1 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.6 gi|313126724|ref|YP_004036994.1| - 0.047 13.6 1.2 4.2 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|313126724|ref|YP_004036994.1| - 0.057 13.5 1.8 1.5 9.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|313126724|ref|YP_004036994.1| - 0.062 13.0 2.4 1.7 8.4 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-RRN7 PF11781.8 gi|313126724|ref|YP_004036994.1| - 0.064 12.9 1.4 2 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|313126724|ref|YP_004036994.1| - 0.065 13.1 1.2 8.3 6.4 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) IBR PF01485.21 gi|313126724|ref|YP_004036994.1| - 0.076 13.3 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-ACC PF17848.1 gi|313126724|ref|YP_004036994.1| - 0.083 13.0 2.7 0.61 10.2 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|313126724|ref|YP_004036994.1| - 0.091 12.8 1.1 0.25 11.4 1.1 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|313126724|ref|YP_004036994.1| - 0.1 12.5 0.9 0.55 10.1 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Anti-TRAP PF15777.5 gi|313126724|ref|YP_004036994.1| - 0.11 12.5 1.2 2 8.4 0.0 2.1 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-NADH-PPase PF09297.11 gi|313126724|ref|YP_004036994.1| - 0.12 12.1 1.6 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain GFA PF04828.14 gi|313126724|ref|YP_004036994.1| - 0.13 12.6 0.3 6.6 7.1 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.10 gi|313126724|ref|YP_004036994.1| - 0.13 12.0 1.0 3.3 7.5 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.26 gi|313126724|ref|YP_004036994.1| - 0.22 12.0 0.5 1.7 9.3 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prim_Zn_Ribbon PF08273.12 gi|313126724|ref|YP_004036994.1| - 0.92 9.8 5.8 1 9.7 2.5 2.4 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase Fer2 PF00111.27 gi|313126725|ref|YP_004036995.1| - 2.4e-08 33.8 0.5 3.7e-08 33.2 0.5 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|313126725|ref|YP_004036995.1| - 0.13 12.3 1.5 0.18 11.8 1.5 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Thioredoxin_4 PF13462.6 gi|313126726|ref|YP_004036996.1| - 3.6e-32 111.8 0.0 4.6e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|313126726|ref|YP_004036996.1| - 3.4e-11 43.3 1.9 2e-08 34.2 1.9 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain TAT_signal PF10518.9 gi|313126726|ref|YP_004036996.1| - 0.06 13.2 6.8 0.12 12.3 6.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Redoxin PF08534.10 gi|313126727|ref|YP_004036997.1| - 3.4e-14 52.8 0.0 3.8e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|313126727|ref|YP_004036997.1| - 1.5e-09 37.8 0.0 2e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|313126727|ref|YP_004036997.1| - 1.4e-06 28.5 0.0 2.1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|313126727|ref|YP_004036997.1| - 0.00017 21.5 0.0 0.00056 19.9 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|313126727|ref|YP_004036997.1| - 0.00027 21.4 0.0 0.0004 20.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.15 gi|313126728|ref|YP_004036998.1| - 9.8e-17 61.5 15.2 1.3e-16 61.2 15.2 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Tgi2PP PF18250.1 gi|313126728|ref|YP_004036998.1| - 0.053 13.8 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 Effector immunity protein Tgi2PP CBS PF00571.28 gi|313126729|ref|YP_004036999.1| - 1.8e-23 82.7 6.4 2.1e-11 44.1 0.6 2.2 2 0 0 2 2 2 2 CBS domain TAT_signal PF10518.9 gi|313126731|ref|YP_004037001.1| - 0.00016 21.4 5.9 0.00036 20.2 5.9 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SCO1-SenC PF02630.14 gi|313126732|ref|YP_004037002.1| - 1.1e-17 64.1 0.0 1.5e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.9 gi|313126732|ref|YP_004037002.1| - 4.2e-05 23.2 6.4 6.2e-05 22.7 6.4 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF3666 PF12408.8 gi|313126732|ref|YP_004037002.1| - 0.097 11.9 0.1 0.2 10.9 0.1 1.4 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase MFS_1 PF07690.16 gi|313126733|ref|YP_004037003.1| - 1.3e-32 113.1 61.9 5.5e-20 71.6 30.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|313126733|ref|YP_004037003.1| - 0.002 17.1 8.3 0.002 17.1 8.3 2.8 2 1 1 3 3 3 2 Sugar (and other) transporter OATP PF03137.20 gi|313126733|ref|YP_004037003.1| - 3.3 5.9 9.3 0.37 9.0 3.4 2.0 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Aldo_ket_red PF00248.21 gi|313126734|ref|YP_004037004.1| - 1.8e-70 237.5 0.0 2e-70 237.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RDD PF06271.12 gi|313126735|ref|YP_004037005.1| - 5.3e-20 72.1 4.0 5.3e-20 72.1 4.0 2.8 2 1 0 2 2 2 1 RDD family TraB PF01963.17 gi|313126735|ref|YP_004037005.1| - 0.064 13.1 0.0 9.3 6.1 0.0 2.1 2 0 0 2 2 2 0 TraB family DUF1269 PF06897.12 gi|313126735|ref|YP_004037005.1| - 5.1 7.4 6.2 1.2 9.5 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) AMP-binding PF00501.28 gi|313126736|ref|YP_004037006.1| - 1e-77 261.5 0.0 1.4e-77 261.1 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313126736|ref|YP_004037006.1| - 6.2e-24 84.8 0.8 1.4e-23 83.6 0.8 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Creatininase PF02633.14 gi|313126737|ref|YP_004037007.1| - 3.3e-70 236.3 1.2 3.7e-70 236.1 1.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase LMWPc PF01451.21 gi|313126738|ref|YP_004037008.1| - 2e-25 89.8 0.0 2.6e-25 89.4 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase MTD PF01993.18 gi|313126738|ref|YP_004037008.1| - 0.078 12.3 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase CSD PF00313.22 gi|313126739|ref|YP_004037009.1| - 1.2e-20 73.1 0.2 1.3e-20 73.0 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|313126739|ref|YP_004037009.1| - 0.0089 15.9 0.8 0.013 15.4 0.8 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.11 gi|313126739|ref|YP_004037009.1| - 0.052 13.2 1.5 0.08 12.6 1.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|313126739|ref|YP_004037009.1| - 0.063 13.2 0.0 0.067 13.1 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain CusF_Ec PF11604.8 gi|313126739|ref|YP_004037009.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF NikR_C PF08753.11 gi|313126740|ref|YP_004037010.1| - 2.1e-15 56.6 0.1 3.6e-15 55.9 0.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|313126740|ref|YP_004037010.1| - 1.3e-05 24.9 0.1 2.6e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|313126740|ref|YP_004037010.1| - 0.029 14.3 0.0 0.067 13.1 0.0 1.6 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB DsbD_2 PF13386.6 gi|313126741|ref|YP_004037011.1| - 3.4 7.5 11.9 0.63 9.9 7.5 1.8 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region CBS PF00571.28 gi|313126742|ref|YP_004037012.1| - 0.0035 17.8 0.1 8.6 6.9 0.0 3.5 4 0 0 4 4 4 2 CBS domain DUF4559 PF15112.6 gi|313126742|ref|YP_004037012.1| - 0.037 13.7 0.3 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) HTH_DeoR PF08220.12 gi|313126743|ref|YP_004037013.1| - 0.12 12.2 0.0 5.2 6.9 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Phage_integrase PF00589.22 gi|313126748|ref|YP_004037018.1| - 4.4e-38 130.8 0.3 6.9e-38 130.1 0.3 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|313126748|ref|YP_004037018.1| - 1.4e-06 28.6 0.0 3.2e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|313126748|ref|YP_004037018.1| - 4.3e-06 26.9 0.1 3.1e-05 24.2 0.0 2.4 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain CMD PF02627.20 gi|313126750|ref|YP_004037020.1| - 7.3e-10 38.8 0.1 1.7e-09 37.6 0.1 1.7 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF2982 PF11201.8 gi|313126750|ref|YP_004037020.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2982) Usp PF00582.26 gi|313126751|ref|YP_004037021.1| - 5.2e-62 208.5 13.0 3.5e-31 108.6 6.9 2.0 2 0 0 2 2 2 2 Universal stress protein family SRP54 PF00448.22 gi|313126751|ref|YP_004037021.1| - 0.0045 16.6 0.1 0.78 9.3 0.0 2.5 2 1 0 2 2 2 2 SRP54-type protein, GTPase domain DUF3013 PF11217.8 gi|313126751|ref|YP_004037021.1| - 0.027 14.4 0.0 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3013) XPB_DRD PF18458.1 gi|313126751|ref|YP_004037021.1| - 0.095 12.6 0.2 8.7 6.3 0.0 2.6 2 0 0 2 2 2 0 Xeroderma pigmentosum group B helicase damage recognition domain FR47 PF08445.10 gi|313126751|ref|YP_004037021.1| - 0.099 12.6 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein YdjM PF04307.14 gi|313126752|ref|YP_004037022.1| - 2e-15 56.5 10.9 2e-14 53.3 10.9 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4395 PF14340.6 gi|313126752|ref|YP_004037022.1| - 2.1 8.7 12.0 0.66 10.3 7.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4395) MS_channel PF00924.18 gi|313126753|ref|YP_004037023.1| - 1.8e-41 142.0 0.0 3.3e-41 141.1 0.0 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF5059 PF16502.5 gi|313126755|ref|YP_004037025.1| - 6.9e-297 986.3 93.8 1.2e-296 985.5 93.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|313126755|ref|YP_004037025.1| - 3.9e-15 56.1 0.1 1.3e-14 54.5 0.1 2.0 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|313126755|ref|YP_004037025.1| - 6.4e-05 22.6 2.7 6.4e-05 22.6 2.7 4.3 5 0 0 5 5 5 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|313126755|ref|YP_004037025.1| - 0.0056 16.8 0.1 0.045 13.8 0.1 2.4 1 1 0 1 1 1 1 Cupredoxin-like domain Flg_hook PF02120.16 gi|313126755|ref|YP_004037025.1| - 0.13 12.2 0.8 17 5.3 0.1 3.6 4 0 0 4 4 4 0 Flagellar hook-length control protein FliK TarH PF02203.15 gi|313126755|ref|YP_004037025.1| - 0.15 12.0 22.0 0.19 11.7 0.2 5.0 5 1 0 5 5 5 0 Tar ligand binding domain homologue Xan_ur_permease PF00860.20 gi|313126756|ref|YP_004037026.1| - 1.7e-72 244.3 42.4 9.6e-72 241.8 42.4 2.0 1 1 0 1 1 1 1 Permease family CheW PF01584.19 gi|313126757|ref|YP_004037027.1| - 7.5e-27 93.7 0.1 9.1e-27 93.4 0.1 1.1 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 gi|313126758|ref|YP_004037028.1| - 5.3e-53 179.2 1.4 8e-53 178.6 0.3 1.8 2 1 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|313126758|ref|YP_004037028.1| - 3.7e-27 94.7 0.9 8.8e-27 93.5 0.6 1.8 2 0 0 2 2 2 1 Response regulator receiver domain Hpt PF01627.23 gi|313126759|ref|YP_004037029.1| - 3.3e-18 65.7 1.6 7.5e-18 64.6 0.3 2.4 2 1 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 gi|313126759|ref|YP_004037029.1| - 7e-18 65.2 0.5 5e-17 62.4 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|313126759|ref|YP_004037029.1| - 1.2e-17 63.8 1.6 2.3e-17 62.9 1.6 1.4 1 0 0 1 1 1 1 CheW-like domain P2 PF07194.11 gi|313126759|ref|YP_004037029.1| - 1e-08 35.1 0.0 5.5e-08 32.8 0.0 2.3 2 0 0 2 2 2 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|313126759|ref|YP_004037029.1| - 9.8e-06 25.9 3.2 9.8e-06 25.9 3.2 2.0 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|313126759|ref|YP_004037029.1| - 0.0013 18.7 0.1 0.0053 16.7 0.1 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Macoilin PF09726.9 gi|313126759|ref|YP_004037029.1| - 0.23 9.9 6.6 0.34 9.4 6.6 1.1 1 0 0 1 1 1 0 Macoilin family CheR PF01739.18 gi|313126760|ref|YP_004037030.1| - 3.3e-48 163.8 0.0 4.2e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|313126760|ref|YP_004037030.1| - 2.6e-12 46.3 0.8 4.7e-12 45.4 0.8 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|313126760|ref|YP_004037030.1| - 1.8e-06 28.6 0.0 1.1e-05 26.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313126760|ref|YP_004037030.1| - 7.2e-06 26.6 0.0 0.0023 18.6 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313126760|ref|YP_004037030.1| - 6.9e-05 22.7 0.0 0.06 13.1 0.0 2.5 3 0 0 3 3 3 2 Methyltransferase domain Acetyltransf_6 PF13480.7 gi|313126760|ref|YP_004037030.1| - 0.00093 19.4 0.3 0.0018 18.4 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Methyltransf_11 PF08241.12 gi|313126760|ref|YP_004037030.1| - 0.0062 17.2 0.0 0.32 11.7 0.0 2.4 1 1 0 2 2 2 1 Methyltransferase domain APAF1_C PF17908.1 gi|313126760|ref|YP_004037030.1| - 0.015 15.3 0.0 3.1 7.8 0.0 2.2 2 0 0 2 2 2 0 APAF-1 helical domain NodS PF05401.11 gi|313126760|ref|YP_004037030.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) CobU PF02283.16 gi|313126760|ref|YP_004037030.1| - 0.19 11.3 0.0 0.41 10.2 0.0 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase CheF-arch PF04283.12 gi|313126761|ref|YP_004037031.1| - 1.4e-74 250.5 0.0 2.2e-74 249.9 0.0 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_4 PF06713.11 gi|313126761|ref|YP_004037031.1| - 0.022 14.8 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain EFP PF01132.20 gi|313126761|ref|YP_004037031.1| - 0.11 12.5 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain CheF-arch PF04283.12 gi|313126762|ref|YP_004037032.1| - 6.9e-47 160.0 0.1 1.4e-46 159.0 0.1 1.5 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea TFIIE_alpha PF02002.17 gi|313126762|ref|YP_004037032.1| - 0.64 9.9 2.8 1.2 9.0 0.6 2.1 1 1 1 2 2 2 0 TFIIE alpha subunit T2SSF PF00482.23 gi|313126763|ref|YP_004037033.1| - 4.8e-14 52.4 2.5 1.1e-09 38.3 0.2 3.4 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|313126764|ref|YP_004037034.1| - 1.6e-44 152.0 0.0 2.3e-44 151.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|313126764|ref|YP_004037034.1| - 9.3e-05 22.9 0.0 0.0019 18.6 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313126764|ref|YP_004037034.1| - 0.00075 19.8 0.0 0.0024 18.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|313126764|ref|YP_004037034.1| - 0.0062 16.3 0.0 0.076 12.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|313126764|ref|YP_004037034.1| - 0.014 15.9 0.0 0.067 13.7 0.0 2.1 2 0 0 2 2 2 0 ABC transporter Dynamin_N PF00350.23 gi|313126764|ref|YP_004037034.1| - 0.047 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Dynamin family AAA_29 PF13555.6 gi|313126764|ref|YP_004037034.1| - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|313126764|ref|YP_004037034.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AIG1 PF04548.16 gi|313126764|ref|YP_004037034.1| - 0.09 12.1 0.0 0.2 10.9 0.0 1.6 1 0 0 1 1 1 0 AIG1 family FtsK_SpoIIIE PF01580.18 gi|313126764|ref|YP_004037034.1| - 0.17 11.2 0.0 0.35 10.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|313126764|ref|YP_004037034.1| - 0.48 10.9 1.9 0.59 10.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|313126765|ref|YP_004037035.1| - 5.5e-16 58.6 0.1 8.5e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 KaiC NACHT PF05729.12 gi|313126765|ref|YP_004037035.1| - 0.00012 22.1 0.2 0.0011 18.9 0.2 2.1 1 1 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 gi|313126765|ref|YP_004037035.1| - 0.0025 17.4 0.2 0.022 14.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313126765|ref|YP_004037035.1| - 0.0053 17.0 0.1 0.014 15.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|313126765|ref|YP_004037035.1| - 0.0069 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|313126765|ref|YP_004037035.1| - 0.011 16.2 0.2 0.028 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain Rad51 PF08423.11 gi|313126765|ref|YP_004037035.1| - 0.04 13.2 0.2 0.13 11.5 0.1 1.7 2 0 0 2 2 2 0 Rad51 FF PF01846.19 gi|313126765|ref|YP_004037035.1| - 0.04 14.1 0.2 0.15 12.3 0.1 2.0 1 1 1 2 2 2 0 FF domain DAP3 PF10236.9 gi|313126765|ref|YP_004037035.1| - 0.046 12.9 0.1 0.27 10.4 0.0 1.9 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Arch_flagellin PF01917.16 gi|313126766|ref|YP_004037036.1| - 2.2e-20 73.5 4.2 2.5e-20 73.3 4.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF756 PF05506.12 gi|313126766|ref|YP_004037036.1| - 0.029 15.3 0.7 0.053 14.4 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF756) CARDB PF07705.11 gi|313126766|ref|YP_004037036.1| - 0.066 13.5 1.6 0.1 12.9 1.4 1.4 1 1 0 1 1 1 0 CARDB Arch_flagellin PF01917.16 gi|313126767|ref|YP_004037037.1| - 8.2e-12 45.6 4.5 9.2e-12 45.5 4.5 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|313126768|ref|YP_004037038.1| - 9.8e-23 79.9 0.0 2.6e-22 78.5 0.0 1.8 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|313126768|ref|YP_004037038.1| - 2.3e-21 75.9 2.7 2.9e-21 75.6 1.1 2.1 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|313126768|ref|YP_004037038.1| - 0.0071 16.8 0.4 0.0071 16.8 0.4 3.7 4 1 0 4 4 4 1 Cell division protein ZapB NPV_P10 PF05531.12 gi|313126768|ref|YP_004037038.1| - 0.0093 16.4 0.5 0.02 15.3 0.5 1.5 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein bZIP_1 PF00170.21 gi|313126768|ref|YP_004037038.1| - 0.054 13.6 0.7 1.3 9.2 0.7 2.8 1 1 0 1 1 1 0 bZIP transcription factor ASC PF00858.24 gi|313126768|ref|YP_004037038.1| - 0.076 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel DUF1664 PF07889.12 gi|313126768|ref|YP_004037038.1| - 0.12 12.4 0.4 0.26 11.3 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|313126768|ref|YP_004037038.1| - 0.96 9.7 3.6 0.41 10.9 0.2 2.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) ATPase PF06745.13 gi|313126769|ref|YP_004037039.1| - 2.4e-50 171.0 0.0 2.8e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|313126769|ref|YP_004037039.1| - 7.2e-05 22.4 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|313126769|ref|YP_004037039.1| - 0.0015 17.9 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|313126769|ref|YP_004037039.1| - 0.019 14.2 0.4 0.032 13.5 0.1 1.4 2 0 0 2 2 2 0 Rad51 AAA_24 PF13479.6 gi|313126769|ref|YP_004037039.1| - 0.022 14.5 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|313126769|ref|YP_004037039.1| - 0.061 12.6 0.0 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_7 PF12775.7 gi|313126769|ref|YP_004037039.1| - 0.07 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|313126769|ref|YP_004037039.1| - 0.12 12.7 0.1 0.26 11.7 0.1 1.7 1 1 1 2 2 2 0 AAA ATPase domain Arch_flagellin PF01917.16 gi|313126770|ref|YP_004037040.1| - 1.5e-34 119.6 15.3 1.9e-34 119.2 15.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Phi-29_GP16_7 PF06720.11 gi|313126770|ref|YP_004037040.1| - 0.036 13.9 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 Bacteriophage phi-29 early protein GP16.7 RF-1 PF00472.20 gi|313126770|ref|YP_004037040.1| - 0.12 12.4 0.6 0.2 11.6 0.6 1.4 1 1 0 1 1 1 0 RF-1 domain Arch_flagellin PF01917.16 gi|313126771|ref|YP_004037041.1| - 3.1e-32 112.0 11.5 4e-32 111.7 11.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Peptidase_A4 PF01828.17 gi|313126771|ref|YP_004037041.1| - 0.099 12.1 3.4 0.042 13.3 1.2 1.5 2 0 0 2 2 2 0 Peptidase A4 family Arch_flagellin PF01917.16 gi|313126772|ref|YP_004037042.1| - 3.8e-35 121.5 13.6 4.8e-35 121.2 13.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Cadherin-like PF12733.7 gi|313126772|ref|YP_004037042.1| - 8.2 7.0 9.6 0.6 10.7 2.2 2.3 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain Arch_flagellin PF01917.16 gi|313126773|ref|YP_004037043.1| - 1.4e-35 122.9 11.4 1.8e-35 122.6 11.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin HTH_20 PF12840.7 gi|313126774|ref|YP_004037044.1| - 7.4e-09 35.5 0.2 1.1e-08 35.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313126774|ref|YP_004037044.1| - 0.00019 21.3 0.0 0.00036 20.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|313126774|ref|YP_004037044.1| - 0.00069 19.1 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|313126774|ref|YP_004037044.1| - 0.0017 18.2 0.0 0.003 17.4 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313126774|ref|YP_004037044.1| - 0.0045 16.9 0.1 0.0068 16.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313126774|ref|YP_004037044.1| - 0.0048 16.7 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313126774|ref|YP_004037044.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|313126774|ref|YP_004037044.1| - 0.1 12.2 0.0 0.25 10.9 0.0 1.6 2 0 0 2 2 2 0 winged helix-turn-helix RdRP_5 PF07925.11 gi|313126775|ref|YP_004037045.1| - 0.12 9.7 0.0 0.15 9.4 0.0 1.0 1 0 0 1 1 1 0 Reovirus RNA-dependent RNA polymerase lambda 3 Response_reg PF00072.24 gi|313126776|ref|YP_004037046.1| - 5.9e-31 106.9 0.2 6.6e-31 106.8 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ADH_zinc_N PF00107.26 gi|313126776|ref|YP_004037046.1| - 0.086 12.8 0.2 4.1 7.4 0.0 2.0 1 1 1 2 2 2 0 Zinc-binding dehydrogenase CheC PF04509.12 gi|313126777|ref|YP_004037047.1| - 1.3e-26 92.2 0.4 4.4e-14 52.1 0.1 3.1 3 0 0 3 3 3 2 CheC-like family CheX PF13690.6 gi|313126777|ref|YP_004037047.1| - 7e-22 77.4 0.1 1.5e-09 37.9 0.0 2.5 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheD PF03975.13 gi|313126778|ref|YP_004037048.1| - 1.5e-31 108.7 0.1 2.1e-31 108.2 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Arch_fla_DE PF04659.13 gi|313126779|ref|YP_004037049.1| - 4.8e-27 93.7 0.1 7.4e-27 93.1 0.1 1.3 1 0 0 1 1 1 1 Archaeal flagella protein DUF835 PF05763.12 gi|313126779|ref|YP_004037049.1| - 0.22 11.3 0.0 0.34 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) MreB_Mbl PF06723.13 gi|313126780|ref|YP_004037050.1| - 0.013 14.3 0.0 0.021 13.7 0.0 1.5 1 1 0 1 1 1 0 MreB/Mbl protein DNA_gyraseB PF00204.25 gi|313126780|ref|YP_004037050.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 DNA gyrase B CheX PF13690.6 gi|313126780|ref|YP_004037050.1| - 0.047 13.9 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX BcrAD_BadFG PF01869.20 gi|313126780|ref|YP_004037050.1| - 0.047 13.2 0.0 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family PfkB PF00294.24 gi|313126781|ref|YP_004037051.1| - 5.5e-66 222.9 0.1 6.2e-66 222.7 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|313126781|ref|YP_004037051.1| - 0.00055 19.4 0.0 0.00078 18.9 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Methyltransf_5 PF01795.19 gi|313126781|ref|YP_004037051.1| - 0.19 11.2 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family RelE PF06296.12 gi|313126782|ref|YP_004037052.1| - 0.14 12.3 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 RelE toxin of RelE / RelB toxin-antitoxin system HisKA_7TM PF16927.5 gi|313126783|ref|YP_004037053.1| - 1.9e-42 145.8 17.0 2.6e-42 145.4 17.0 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|313126783|ref|YP_004037053.1| - 3.3e-23 82.1 11.0 1.2e-11 44.9 0.2 3.4 4 1 0 4 4 4 2 PAS fold PAS PF00989.25 gi|313126783|ref|YP_004037053.1| - 3.2e-22 78.7 0.0 9.9e-10 38.4 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313126783|ref|YP_004037053.1| - 4e-15 56.0 0.0 7.7e-09 35.7 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|313126783|ref|YP_004037053.1| - 4.4e-13 49.3 0.3 2.1e-11 43.9 0.0 3.3 4 0 0 4 4 4 1 PAS fold HATPase_c PF02518.26 gi|313126783|ref|YP_004037053.1| - 1.1e-11 45.2 0.1 4.9e-11 43.1 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|313126783|ref|YP_004037053.1| - 3.1e-10 39.8 0.0 0.00092 19.2 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|313126783|ref|YP_004037053.1| - 8.5e-09 35.4 0.2 2.4e-06 27.5 0.1 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|313126783|ref|YP_004037053.1| - 2.9e-07 30.6 1.2 0.0019 18.3 0.0 4.0 3 1 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|313126783|ref|YP_004037053.1| - 2.5e-05 24.2 0.7 5.6e-05 23.1 0.7 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|313126783|ref|YP_004037053.1| - 0.00039 20.0 0.2 0.0012 18.5 0.2 1.9 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|313126783|ref|YP_004037053.1| - 0.0056 16.5 0.3 0.037 13.9 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acyl-CoA_dh_1 PF00441.24 gi|313126784|ref|YP_004037054.1| - 2.7e-47 160.7 1.1 3.7e-47 160.3 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313126784|ref|YP_004037054.1| - 2e-38 131.5 0.5 3.9e-38 130.6 0.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313126784|ref|YP_004037054.1| - 8.5e-24 83.6 0.1 1.3e-23 83.0 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313126784|ref|YP_004037054.1| - 2e-16 60.5 1.5 3.3e-16 59.8 1.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Usp PF00582.26 gi|313126785|ref|YP_004037055.1| - 4.8e-39 134.1 3.2 5.4e-39 133.9 3.2 1.0 1 0 0 1 1 1 1 Universal stress protein family SpoVAE PF14097.6 gi|313126785|ref|YP_004037055.1| - 0.072 12.7 0.5 1.7 8.3 0.1 2.1 2 0 0 2 2 2 0 Stage V sporulation protein AE1 RIO1 PF01163.22 gi|313126786|ref|YP_004037056.1| - 5.3e-12 45.7 0.0 8.9e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|313126786|ref|YP_004037056.1| - 2.1e-06 27.2 0.0 3.6e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|313126786|ref|YP_004037056.1| - 2.5e-06 27.0 0.0 3.4e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|313126786|ref|YP_004037056.1| - 6.2e-05 23.0 2.0 0.0012 18.9 0.4 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|313126786|ref|YP_004037056.1| - 0.00023 20.9 0.0 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|313126786|ref|YP_004037056.1| - 0.0019 17.5 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-PolyVal PF18762.1 gi|313126786|ref|YP_004037056.1| - 0.038 13.9 0.1 0.056 13.4 0.1 1.3 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins DUF4112 PF13430.6 gi|313126787|ref|YP_004037057.1| - 1.1e-34 118.9 0.3 1.2e-34 118.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) ABC_tran PF00005.27 gi|313126788|ref|YP_004037058.1| - 5.1e-34 117.7 0.0 7.4e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126788|ref|YP_004037058.1| - 8.2e-14 52.1 0.4 1.3e-05 25.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313126788|ref|YP_004037058.1| - 0.0002 21.0 0.0 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|313126788|ref|YP_004037058.1| - 0.00033 20.5 0.0 0.002 17.9 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|313126788|ref|YP_004037058.1| - 0.00039 19.9 0.0 0.029 13.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313126788|ref|YP_004037058.1| - 0.00054 20.2 0.1 0.016 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|313126788|ref|YP_004037058.1| - 0.0013 19.3 0.0 0.0022 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126788|ref|YP_004037058.1| - 0.0016 18.9 0.0 0.0022 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313126788|ref|YP_004037058.1| - 0.0016 18.4 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|313126788|ref|YP_004037058.1| - 0.003 18.0 0.1 0.038 14.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|313126788|ref|YP_004037058.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313126788|ref|YP_004037058.1| - 0.033 13.9 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|313126788|ref|YP_004037058.1| - 0.039 14.0 0.0 0.078 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|313126788|ref|YP_004037058.1| - 0.093 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|313126788|ref|YP_004037058.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|313126788|ref|YP_004037058.1| - 0.15 11.5 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|313126788|ref|YP_004037058.1| - 0.15 11.8 0.1 0.22 11.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|313126788|ref|YP_004037058.1| - 0.15 12.0 0.1 0.26 11.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|313126788|ref|YP_004037058.1| - 0.16 10.7 0.1 5 5.8 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.6 gi|313126788|ref|YP_004037058.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|313126789|ref|YP_004037059.1| - 1.5e-30 106.5 0.0 2.1e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126789|ref|YP_004037059.1| - 3.4e-12 46.8 1.9 1.5e-05 25.0 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|313126789|ref|YP_004037059.1| - 1.2e-09 37.9 0.0 2.4e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|313126789|ref|YP_004037059.1| - 1.1e-05 25.0 0.1 0.096 12.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313126789|ref|YP_004037059.1| - 0.00075 19.2 0.2 0.0018 18.0 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|313126789|ref|YP_004037059.1| - 0.0026 17.5 0.0 0.11 12.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|313126789|ref|YP_004037059.1| - 0.003 18.1 1.2 0.0049 17.4 1.2 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313126789|ref|YP_004037059.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|313126789|ref|YP_004037059.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.7 gi|313126789|ref|YP_004037059.1| - 0.073 12.0 0.0 0.098 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_30 PF13604.6 gi|313126789|ref|YP_004037059.1| - 0.14 11.9 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2559 PF10832.8 gi|313126789|ref|YP_004037059.1| - 0.16 12.0 0.1 3.3 7.8 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2559) BPD_transp_2 PF02653.16 gi|313126790|ref|YP_004037060.1| - 3.8e-52 177.1 28.0 3.8e-52 177.1 28.0 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF5381 PF17353.2 gi|313126790|ref|YP_004037060.1| - 5.2 6.8 6.4 8 6.2 0.0 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5381) BPD_transp_2 PF02653.16 gi|313126791|ref|YP_004037061.1| - 4.3e-40 137.6 42.3 5e-40 137.4 42.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF997 PF06196.12 gi|313126791|ref|YP_004037061.1| - 0.0016 18.4 2.6 0.0016 18.4 2.6 3.8 3 2 1 4 4 4 1 Protein of unknown function (DUF997) Peripla_BP_6 PF13458.6 gi|313126792|ref|YP_004037062.1| - 2.8e-39 135.8 9.8 3.4e-39 135.5 9.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|313126792|ref|YP_004037062.1| - 1.7e-27 96.5 0.0 2.2e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|313126792|ref|YP_004037062.1| - 1.5e-07 30.8 1.9 6.7e-06 25.3 0.3 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain Pro_dh PF01619.18 gi|313126793|ref|YP_004037063.1| - 1.6e-25 90.2 0.0 3e-25 89.4 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase Amidohydro_3 PF07969.11 gi|313126793|ref|YP_004037063.1| - 0.0059 16.1 0.2 0.0068 15.9 0.2 1.2 1 0 0 1 1 1 1 Amidohydrolase family PqqD PF05402.12 gi|313126793|ref|YP_004037063.1| - 0.076 13.3 1.7 2.4 8.5 0.1 2.8 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_10 PF04967.12 gi|313126794|ref|YP_004037064.1| - 5.8e-20 70.8 0.1 1.1e-19 70.0 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|313126794|ref|YP_004037064.1| - 0.00038 20.1 0.6 0.35 10.6 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_psq PF05225.16 gi|313126794|ref|YP_004037064.1| - 0.00089 19.0 0.1 0.052 13.3 0.0 2.4 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_24 PF13412.6 gi|313126794|ref|YP_004037064.1| - 0.0013 18.3 0.0 0.0031 17.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313126794|ref|YP_004037064.1| - 0.0027 17.7 0.1 0.01 15.9 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313126794|ref|YP_004037064.1| - 0.0069 16.3 0.7 0.027 14.4 0.1 2.3 3 0 0 3 3 3 1 MarR family Sigma70_r4 PF04545.16 gi|313126794|ref|YP_004037064.1| - 0.012 15.1 0.1 0.034 13.7 0.1 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|313126794|ref|YP_004037064.1| - 0.013 15.4 0.1 0.03 14.2 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TetR_N PF00440.23 gi|313126794|ref|YP_004037064.1| - 0.023 14.5 0.3 0.17 11.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family GerE PF00196.19 gi|313126794|ref|YP_004037064.1| - 0.03 13.9 0.0 0.15 11.7 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_1_2 PF13022.6 gi|313126794|ref|YP_004037064.1| - 0.038 14.1 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_50 PF18024.1 gi|313126794|ref|YP_004037064.1| - 0.042 13.5 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TubC_N PF18563.1 gi|313126794|ref|YP_004037064.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 TubC N-terminal docking domain Nif11 PF07862.11 gi|313126794|ref|YP_004037064.1| - 0.093 13.1 0.1 0.93 9.8 0.0 2.2 2 0 0 2 2 2 0 Nif11 domain Coat_F PF07875.12 gi|313126794|ref|YP_004037064.1| - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Coat F domain HTH_15 PF12324.8 gi|313126794|ref|YP_004037064.1| - 0.23 11.4 1.2 0.56 10.2 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase Aldedh PF00171.22 gi|313126795|ref|YP_004037065.1| - 4.9e-143 477.0 0.0 6.1e-143 476.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|313126795|ref|YP_004037065.1| - 0.00014 21.8 0.8 0.00027 20.9 0.8 1.4 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.14 gi|313126795|ref|YP_004037065.1| - 0.018 14.1 0.0 0.037 13.1 0.0 1.4 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) Polyketide_cyc2 PF10604.9 gi|313126796|ref|YP_004037066.1| - 9.7e-18 64.8 0.9 1.1e-17 64.6 0.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|313126796|ref|YP_004037066.1| - 0.00012 22.2 0.2 0.00015 22.0 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|313126796|ref|YP_004037066.1| - 0.00024 20.9 0.0 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) FaeA PF04703.12 gi|313126797|ref|YP_004037067.1| - 0.00065 20.0 0.2 0.00079 19.7 0.2 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_AsnC-type PF13404.6 gi|313126797|ref|YP_004037067.1| - 0.0084 15.9 0.2 0.016 15.1 0.2 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|313126797|ref|YP_004037067.1| - 0.039 14.0 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus LexA_DNA_bind PF01726.16 gi|313126797|ref|YP_004037067.1| - 0.048 13.4 0.0 0.071 12.9 0.0 1.3 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|313126797|ref|YP_004037067.1| - 0.1 12.2 0.1 0.31 10.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding z-alpha PF02295.17 gi|313126797|ref|YP_004037067.1| - 0.1 12.6 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain YbgT_YccB PF08173.11 gi|313126798|ref|YP_004037068.1| - 0.21 11.8 1.5 0.21 11.8 1.5 2.9 2 1 0 2 2 2 0 Membrane bound YbgT-like protein TMEM43 PF07787.12 gi|313126798|ref|YP_004037068.1| - 1.5 8.1 3.6 1.7 8.0 3.6 1.0 1 0 0 1 1 1 0 Transmembrane protein 43 LEA_2 PF03168.13 gi|313126799|ref|YP_004037069.1| - 7.2e-19 68.2 0.2 3.3e-09 37.2 0.0 2.5 2 0 0 2 2 2 2 Late embryogenesis abundant protein PapD_C PF02753.17 gi|313126799|ref|YP_004037069.1| - 0.072 13.5 1.5 12 6.3 0.2 2.8 2 0 0 2 2 2 0 Pili assembly chaperone PapD, C-terminal domain PhoU PF01895.19 gi|313126801|ref|YP_004037071.1| - 5.3e-14 52.4 10.0 5.5e-13 49.2 0.0 2.6 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|313126801|ref|YP_004037071.1| - 2.2e-07 30.7 0.0 3.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|313126802|ref|YP_004037072.1| - 3.9e-45 154.3 0.3 4.5e-45 154.1 0.3 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|313126802|ref|YP_004037072.1| - 1.6e-05 24.5 2.8 2.6e-05 23.9 0.1 2.5 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain ThiS PF02597.20 gi|313126802|ref|YP_004037072.1| - 0.0017 18.9 0.2 0.0076 16.9 0.1 2.1 2 0 0 2 2 2 1 ThiS family Peripla_BP_4 PF13407.6 gi|313126802|ref|YP_004037072.1| - 0.012 15.1 1.8 0.067 12.8 1.1 2.3 2 1 1 3 3 3 0 Periplasmic binding protein domain PFK PF00365.20 gi|313126802|ref|YP_004037072.1| - 0.03 13.6 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 Phosphofructokinase MoCF_biosynth PF00994.24 gi|313126804|ref|YP_004037074.1| - 6e-37 126.5 0.2 8.8e-37 126.0 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|313126804|ref|YP_004037074.1| - 0.049 13.8 0.4 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain PsbU PF06514.11 gi|313126804|ref|YP_004037074.1| - 0.052 13.5 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Photosystem II 12 kDa extrinsic protein (PsbU) GDPD PF03009.17 gi|313126805|ref|YP_004037075.1| - 3.1e-28 99.2 0.0 4.6e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family DUF2110 PF09883.9 gi|313126807|ref|YP_004037077.1| - 1.9e-93 312.2 0.0 2.1e-93 312.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.17 gi|313126808|ref|YP_004037078.1| - 3.6e-20 71.8 0.1 9.5e-20 70.4 0.0 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|313126808|ref|YP_004037078.1| - 0.002 18.2 0.2 0.006 16.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-70 region 3 GntR PF00392.21 gi|313126808|ref|YP_004037078.1| - 0.37 10.5 1.4 0.99 9.1 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Trm56 PF01994.16 gi|313126809|ref|YP_004037079.1| - 2.2e-48 163.1 0.0 3e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Epimerase PF01370.21 gi|313126810|ref|YP_004037080.1| - 9.7e-52 175.8 0.0 1.2e-51 175.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313126810|ref|YP_004037080.1| - 4.8e-41 141.2 0.1 2e-40 139.2 0.1 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|313126810|ref|YP_004037080.1| - 1.9e-19 69.9 0.1 2.5e-19 69.5 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|313126810|ref|YP_004037080.1| - 1.9e-13 50.1 0.0 2.5e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|313126810|ref|YP_004037080.1| - 2.6e-13 49.8 0.2 3.1e-12 46.3 0.2 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|313126810|ref|YP_004037080.1| - 2.9e-12 46.8 0.0 4.7e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|313126810|ref|YP_004037080.1| - 8.4e-09 35.0 0.1 3.6e-07 29.6 0.0 2.7 1 1 1 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|313126810|ref|YP_004037080.1| - 1.1e-05 25.1 0.4 0.0014 18.2 0.1 2.1 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|313126810|ref|YP_004037080.1| - 3.6e-05 24.0 0.2 8.4e-05 22.8 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.25 gi|313126810|ref|YP_004037080.1| - 0.00042 19.8 0.6 0.0066 15.9 0.4 2.8 2 1 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|313126810|ref|YP_004037080.1| - 0.0074 16.6 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|313126810|ref|YP_004037080.1| - 0.011 15.8 0.1 0.024 14.7 0.1 1.5 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|313126810|ref|YP_004037080.1| - 0.033 13.7 0.1 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DapB_N PF01113.20 gi|313126810|ref|YP_004037080.1| - 0.069 13.3 0.1 0.15 12.2 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF2797 PF10977.8 gi|313126811|ref|YP_004037081.1| - 3.1e-30 105.8 9.3 1.4e-25 90.6 5.9 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2797) MutS_III PF05192.18 gi|313126812|ref|YP_004037082.1| - 0.026 14.8 0.0 0.03 14.5 0.0 1.0 1 0 0 1 1 1 0 MutS domain III XRCC4 PF06632.12 gi|313126812|ref|YP_004037082.1| - 0.096 11.5 0.3 0.096 11.5 0.3 1.7 2 0 0 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 DUF4140 PF13600.6 gi|313126812|ref|YP_004037082.1| - 2.7 8.5 6.0 3 8.4 0.6 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Glycos_transf_1 PF00534.20 gi|313126813|ref|YP_004037083.1| - 7.2e-31 107.0 0.0 2.1e-30 105.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313126813|ref|YP_004037083.1| - 2.4e-27 96.0 0.2 7.4e-27 94.4 0.4 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|313126813|ref|YP_004037083.1| - 1.4e-22 80.5 0.0 7.3e-22 78.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|313126813|ref|YP_004037083.1| - 2.7e-13 50.6 4.0 1e-12 48.8 1.6 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|313126813|ref|YP_004037083.1| - 0.0024 18.3 0.1 0.0072 16.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|313126813|ref|YP_004037083.1| - 0.022 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Rpr2 PF04032.16 gi|313126814|ref|YP_004037084.1| - 2.4e-12 46.9 0.1 2.9e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain PriA_CRR PF18319.1 gi|313126814|ref|YP_004037084.1| - 0.0005 20.0 2.7 0.0096 15.9 0.1 2.4 2 0 0 2 2 2 1 PriA DNA helicase Cys-rich region (CRR) domain zf-RING_7 PF02591.15 gi|313126814|ref|YP_004037084.1| - 0.0027 17.9 2.1 0.0049 17.0 2.1 1.5 1 0 0 1 1 1 1 C4-type zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|313126814|ref|YP_004037084.1| - 0.031 14.3 0.1 0.74 9.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-ribbon DUF3878 PF12994.7 gi|313126814|ref|YP_004037084.1| - 0.15 11.5 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3878) zf-DNL PF05180.12 gi|313126814|ref|YP_004037084.1| - 0.3 11.1 2.2 0.57 10.2 2.2 1.4 1 1 0 1 1 1 0 DNL zinc finger Tnp_zf-ribbon_2 PF13842.6 gi|313126814|ref|YP_004037084.1| - 0.3 11.9 3.4 0.76 10.6 0.4 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon CRS1_YhbY PF01985.21 gi|313126815|ref|YP_004037085.1| - 1.4e-12 47.6 0.2 1.7e-12 47.3 0.2 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.18 gi|313126816|ref|YP_004037086.1| - 1.1e-51 175.3 0.1 1.4e-51 175.0 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel SfLAP PF11139.8 gi|313126816|ref|YP_004037086.1| - 0.13 11.7 6.4 0.2 11.1 6.4 1.2 1 0 0 1 1 1 0 Sap, sulfolipid-1-addressing protein HD PF01966.22 gi|313126817|ref|YP_004037087.1| - 7.5e-10 39.1 2.6 7.5e-10 39.1 2.6 1.6 2 0 0 2 2 2 1 HD domain AhpC-TSA PF00578.21 gi|313126818|ref|YP_004037088.1| - 1.5e-32 112.1 0.0 1.7e-32 111.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313126818|ref|YP_004037088.1| - 2.8e-23 82.2 0.1 3.3e-23 82.0 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|313126818|ref|YP_004037088.1| - 0.0049 17.0 0.0 0.24 11.5 0.0 2.1 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DoxX PF07681.12 gi|313126819|ref|YP_004037089.1| - 2.4e-14 53.7 3.9 2.4e-14 53.7 3.9 1.4 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.6 gi|313126819|ref|YP_004037089.1| - 0.0079 16.3 2.5 0.0079 16.3 2.5 1.5 2 0 0 2 2 2 1 DoxX-like family HR_lesion PF05514.11 gi|313126819|ref|YP_004037089.1| - 0.012 15.8 0.2 0.041 14.1 0.1 1.8 1 1 1 2 2 2 0 HR-like lesion-inducing DUF2516 PF10724.9 gi|313126819|ref|YP_004037089.1| - 0.14 12.5 1.5 0.62 10.4 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2516) MttA_Hcf106 PF02416.16 gi|313126820|ref|YP_004037090.1| - 5.4e-15 54.5 0.0 7.6e-15 54.0 0.0 1.3 1 0 0 1 1 1 1 mttA/Hcf106 family PBP1_TM PF14812.6 gi|313126820|ref|YP_004037090.1| - 0.036 14.4 1.7 0.036 14.4 1.7 1.4 2 0 0 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal DUF4834 PF16118.5 gi|313126820|ref|YP_004037090.1| - 0.04 14.9 0.0 0.046 14.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF5497 PF17601.2 gi|313126820|ref|YP_004037090.1| - 0.042 14.2 0.1 0.045 14.1 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5497) CAP18_C PF12153.8 gi|313126820|ref|YP_004037090.1| - 0.056 13.3 1.1 0.085 12.7 1.1 1.3 1 0 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) T2SSE PF00437.20 gi|313126821|ref|YP_004037091.1| - 2.4e-43 148.2 0.0 4.2e-43 147.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|313126821|ref|YP_004037091.1| - 0.0051 16.5 0.1 0.0099 15.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSF PF00482.23 gi|313126822|ref|YP_004037092.1| - 7.4e-29 100.2 7.1 3.1e-14 53.0 0.9 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF4519 PF15012.6 gi|313126823|ref|YP_004037093.1| - 0.0033 17.6 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4519) DUF3915 PF13054.6 gi|313126823|ref|YP_004037093.1| - 0.066 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) DUF2116 PF09889.9 gi|313126823|ref|YP_004037093.1| - 0.11 12.6 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF5362 PF17319.2 gi|313126829|ref|YP_004037099.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5362) HemY_N PF07219.13 gi|313126829|ref|YP_004037099.1| - 0.043 14.0 0.3 0.1 12.8 0.1 1.6 1 1 1 2 2 2 0 HemY protein N-terminus PKcGMP_CC PF16808.5 gi|313126830|ref|YP_004037100.1| - 0.015 15.1 1.1 0.022 14.6 1.1 1.2 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF2304 PF10066.9 gi|313126830|ref|YP_004037100.1| - 0.033 14.4 0.1 0.035 14.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) BRI3BP PF14965.6 gi|313126830|ref|YP_004037100.1| - 0.066 12.7 0.0 0.069 12.7 0.0 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Beta_helix PF13229.6 gi|313126831|ref|YP_004037101.1| - 1.3e-27 96.6 37.7 1.1e-12 48.1 6.9 3.4 1 1 1 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|313126831|ref|YP_004037101.1| - 2.1e-24 86.1 25.1 1.2e-09 37.8 3.4 4.5 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) TAT_signal PF10518.9 gi|313126831|ref|YP_004037101.1| - 0.00093 18.9 5.4 0.002 17.9 5.4 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_S13_N PF08069.12 gi|313126832|ref|YP_004037102.1| - 2.3e-21 75.6 0.0 3.6e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|313126832|ref|YP_004037102.1| - 9.6e-15 54.6 0.2 1.4e-14 54.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF4298 PF14131.6 gi|313126832|ref|YP_004037102.1| - 0.047 13.7 0.8 0.082 12.9 0.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) Pcc1 PF09341.10 gi|313126834|ref|YP_004037104.1| - 0.015 15.4 1.3 0.021 14.9 1.3 1.3 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.18 gi|313126835|ref|YP_004037105.1| - 4.6e-58 196.1 0.1 5.6e-58 195.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Copper-bind PF00127.20 gi|313126836|ref|YP_004037106.1| - 1.2e-17 64.2 0.0 2.1e-17 63.4 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313126836|ref|YP_004037106.1| - 8.7e-05 22.6 0.0 0.0035 17.4 0.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|313126836|ref|YP_004037106.1| - 0.035 13.9 5.8 0.067 13.1 5.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.20 gi|313126836|ref|YP_004037106.1| - 0.071 13.0 1.6 0.52 10.2 0.0 2.7 2 1 1 3 3 3 0 PKD domain UCR_Fe-S_N PF10399.9 gi|313126836|ref|YP_004037106.1| - 0.17 11.3 1.0 0.42 10.0 1.0 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDP-OH_P_transf PF01066.21 gi|313126837|ref|YP_004037107.1| - 4.2e-11 43.5 5.1 4.2e-11 43.5 5.1 3.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PadR PF03551.14 gi|313126839|ref|YP_004037109.1| - 0.0006 19.7 0.1 0.0006 19.7 0.1 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family Acyl-CoA_dh_1 PF00441.24 gi|313126840|ref|YP_004037110.1| - 5.4e-48 163.0 1.1 7.7e-48 162.5 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313126840|ref|YP_004037110.1| - 9.2e-36 122.9 0.6 2.5e-35 121.5 0.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|313126840|ref|YP_004037110.1| - 7.5e-26 91.0 1.0 1.2e-25 90.3 1.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313126840|ref|YP_004037110.1| - 2.5e-24 85.3 0.0 5.3e-24 84.2 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF743 PF05332.11 gi|313126840|ref|YP_004037110.1| - 0.16 12.0 0.3 0.28 11.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF743) SQS_PSY PF00494.19 gi|313126841|ref|YP_004037111.1| - 6.6e-50 170.0 1.8 8.6e-50 169.7 1.8 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Band_7 PF01145.25 gi|313126841|ref|YP_004037111.1| - 0.056 13.4 0.1 0.23 11.4 0.0 2.1 1 1 1 2 2 2 0 SPFH domain / Band 7 family Arg_decarbox_C PF17944.1 gi|313126841|ref|YP_004037111.1| - 0.056 14.0 0.0 0.69 10.5 0.0 2.7 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension COX3 PF00510.18 gi|313126842|ref|YP_004037112.1| - 4.8e-36 124.9 19.0 8.9e-36 124.0 19.0 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III TrkA_N PF02254.18 gi|313126843|ref|YP_004037113.1| - 9.8e-41 138.7 10.5 6.1e-23 81.3 0.3 3.7 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|313126843|ref|YP_004037113.1| - 6.3e-25 86.8 1.3 7.5e-13 48.1 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|313126843|ref|YP_004037113.1| - 0.00017 21.5 7.2 0.00037 20.4 7.2 1.5 1 0 0 1 1 1 1 Ion channel TMEM132 PF16070.5 gi|313126843|ref|YP_004037113.1| - 0.023 14.0 0.5 0.072 12.4 0.9 1.5 2 0 0 2 2 2 0 Transmembrane protein family 132 NAD_binding_7 PF13241.6 gi|313126843|ref|YP_004037113.1| - 0.22 12.0 6.9 0.57 10.7 0.1 3.4 2 2 0 3 3 3 0 Putative NAD(P)-binding Penicil_amidase PF01804.18 gi|313126845|ref|YP_004037115.1| - 8.5e-194 646.3 14.0 1.1e-193 646.0 14.0 1.1 1 0 0 1 1 1 1 Penicillin amidase ATP1G1_PLM_MAT8 PF02038.16 gi|313126846|ref|YP_004037116.1| - 2.4 7.7 5.1 12 5.4 0.2 2.5 2 1 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF547 PF04784.14 gi|313126847|ref|YP_004037117.1| - 2e-30 105.3 0.0 2.6e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF547 Cep57_CLD_2 PF14197.6 gi|313126848|ref|YP_004037118.1| - 0.0059 16.7 18.0 0.019 15.1 18.0 1.8 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 DUF1664 PF07889.12 gi|313126848|ref|YP_004037118.1| - 0.08 13.0 2.4 0.16 12.0 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|313126848|ref|YP_004037118.1| - 1.2 9.3 8.4 3.6 7.9 8.4 1.8 1 0 0 1 1 1 0 Haemolysin XhlA Spc7 PF08317.11 gi|313126848|ref|YP_004037118.1| - 5.8 5.7 23.3 11 4.8 23.3 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein YabA PF06156.13 gi|313126848|ref|YP_004037118.1| - 6.1 7.6 13.7 21 5.8 7.7 3.6 3 1 1 4 4 4 0 Initiation control protein YabA HTH_12 PF08461.10 gi|313126849|ref|YP_004037119.1| - 0.0029 17.5 0.1 0.0066 16.4 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|313126849|ref|YP_004037119.1| - 0.025 14.4 0.1 0.059 13.2 0.1 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|313126849|ref|YP_004037119.1| - 0.039 13.9 0.1 0.077 12.9 0.0 1.6 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.19 gi|313126849|ref|YP_004037119.1| - 0.051 13.5 0.1 0.084 12.8 0.1 1.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB SlyX PF04102.12 gi|313126849|ref|YP_004037119.1| - 0.069 13.8 0.4 6.8 7.4 0.0 2.3 2 1 0 2 2 2 0 SlyX PhosphMutase PF10143.9 gi|313126849|ref|YP_004037119.1| - 0.1 12.5 0.1 0.12 12.2 0.1 1.3 1 1 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase CLZ PF16526.5 gi|313126849|ref|YP_004037119.1| - 0.35 11.3 6.1 2.5 8.5 1.1 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Adenylsucc_synt PF00709.21 gi|313126850|ref|YP_004037120.1| - 8.5e-157 522.4 0.0 9.7e-157 522.2 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Bac_globin PF01152.21 gi|313126851|ref|YP_004037121.1| - 1.7e-23 83.1 0.1 1.9e-23 82.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|313126851|ref|YP_004037121.1| - 0.0038 17.1 0.4 0.011 15.6 0.4 1.8 1 1 0 1 1 1 1 Protoglobin Trm112p PF03966.16 gi|313126852|ref|YP_004037122.1| - 0.0026 18.3 0.1 0.006 17.1 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein DUF3995 PF13160.6 gi|313126853|ref|YP_004037123.1| - 0.00059 20.2 2.9 0.0009 19.6 2.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3995) DUF543 PF04418.12 gi|313126853|ref|YP_004037123.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF543) DR2241 PF18069.1 gi|313126854|ref|YP_004037124.1| - 3e-45 152.6 0.9 3e-45 152.6 0.9 2.0 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|313126854|ref|YP_004037124.1| - 4.2e-27 94.4 0.7 7.8e-27 93.5 0.7 1.5 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain CbiX PF01903.17 gi|313126855|ref|YP_004037125.1| - 2.4e-42 143.6 0.1 3.3e-20 72.4 0.0 2.4 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|313126855|ref|YP_004037125.1| - 3.6e-07 29.8 0.0 0.0017 17.7 0.1 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) DUF4860 PF16152.5 gi|313126855|ref|YP_004037125.1| - 0.095 12.6 0.0 4.3 7.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4860) DUF5628 PF18621.1 gi|313126856|ref|YP_004037126.1| - 0.023 15.2 0.1 0.084 13.3 0.0 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5628) tRNA-synt_1e PF01406.19 gi|313126857|ref|YP_004037127.1| - 9.5e-104 347.0 0.2 6.2e-103 344.3 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|313126857|ref|YP_004037127.1| - 3.7e-13 49.7 2.5 5.3e-13 49.2 1.0 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|313126857|ref|YP_004037127.1| - 1.2e-10 40.8 0.3 0.00014 20.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|313126857|ref|YP_004037127.1| - 6.4e-07 28.6 0.0 0.00046 19.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|313126857|ref|YP_004037127.1| - 0.0017 16.7 0.0 0.0061 14.9 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) UVR PF02151.19 gi|313126857|ref|YP_004037127.1| - 0.029 14.1 0.2 0.1 12.4 0.2 2.0 1 0 0 1 1 1 0 UvrB/uvrC motif Dak1_2 PF13684.6 gi|313126857|ref|YP_004037127.1| - 0.031 13.4 0.1 1.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Dihydroxyacetone kinase family FTO_CTD PF12934.7 gi|313126857|ref|YP_004037127.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 FTO C-terminal domain tRNA-synt_1c PF00749.21 gi|313126857|ref|YP_004037127.1| - 0.11 11.3 0.0 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain AP_endonuc_2 PF01261.24 gi|313126857|ref|YP_004037127.1| - 0.14 11.6 4.4 2.2 7.7 0.6 3.1 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel DUF357 PF04010.13 gi|313126858|ref|YP_004037128.1| - 5.5e-32 109.7 0.1 6.5e-32 109.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Acyl_transf_3 PF01757.22 gi|313126859|ref|YP_004037129.1| - 0.044 12.9 7.6 0.061 12.4 7.6 1.2 1 0 0 1 1 1 0 Acyltransferase family TctB PF07331.11 gi|313126859|ref|YP_004037129.1| - 4.2 7.7 14.1 38 4.5 14.1 2.1 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Pyr_redox_2 PF07992.14 gi|313126860|ref|YP_004037130.1| - 3e-43 148.1 0.6 3.6e-43 147.9 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313126860|ref|YP_004037130.1| - 9.3e-18 64.5 0.1 1.6e-16 60.4 0.0 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313126860|ref|YP_004037130.1| - 1.3e-17 64.1 0.5 6.8e-16 58.6 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313126860|ref|YP_004037130.1| - 6.5e-05 22.7 2.0 0.35 10.4 0.0 3.1 2 1 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313126860|ref|YP_004037130.1| - 0.00011 21.0 0.2 1.3 7.7 0.0 3.8 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|313126860|ref|YP_004037130.1| - 0.00032 20.9 0.0 0.0018 18.4 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|313126860|ref|YP_004037130.1| - 0.0023 17.1 7.4 0.22 10.6 0.0 3.4 2 1 2 4 4 4 2 FAD binding domain NAD_binding_7 PF13241.6 gi|313126860|ref|YP_004037130.1| - 0.0054 17.2 0.0 0.019 15.4 0.0 1.9 3 0 0 3 3 3 1 Putative NAD(P)-binding FMO-like PF00743.19 gi|313126860|ref|YP_004037130.1| - 0.0077 14.7 0.0 0.13 10.6 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|313126860|ref|YP_004037130.1| - 0.022 14.1 0.0 3.9 6.7 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|313126860|ref|YP_004037130.1| - 0.042 12.9 0.5 36 3.3 0.0 3.6 4 0 0 4 4 4 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|313126860|ref|YP_004037130.1| - 0.092 11.6 0.8 4.2 6.1 0.0 3.0 3 0 0 3 3 3 0 Tryptophan halogenase Zip PF02535.22 gi|313126862|ref|YP_004037132.1| - 6e-16 58.6 17.7 6.3e-15 55.2 5.4 3.0 1 1 1 2 2 2 2 ZIP Zinc transporter MazG PF03819.17 gi|313126863|ref|YP_004037133.1| - 3.5e-05 23.9 0.1 5e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|313126863|ref|YP_004037133.1| - 0.00051 20.2 0.1 0.00064 19.9 0.1 1.3 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|313126863|ref|YP_004037133.1| - 0.0061 17.0 0.8 0.0073 16.7 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase tRNA_edit PF04073.15 gi|313126864|ref|YP_004037134.1| - 4.2e-34 117.3 0.0 5.2e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain ATP-grasp_5 PF13549.6 gi|313126866|ref|YP_004037136.1| - 9.3e-76 254.2 0.3 1.5e-75 253.5 0.3 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|313126866|ref|YP_004037136.1| - 6.8e-54 181.4 1.1 1.4e-53 180.4 0.3 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|313126866|ref|YP_004037136.1| - 1.6e-23 83.4 2.2 1.6e-22 80.2 0.2 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|313126866|ref|YP_004037136.1| - 7.2e-09 36.2 1.2 7.2e-09 36.2 1.2 2.5 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|313126866|ref|YP_004037136.1| - 0.0016 18.0 0.0 0.0047 16.5 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain Yae1_N PF09811.9 gi|313126866|ref|YP_004037136.1| - 0.52 10.0 1.9 6.9 6.5 0.5 2.4 2 0 0 2 2 2 0 Essential protein Yae1, N terminal AAA_26 PF13500.6 gi|313126867|ref|YP_004037137.1| - 2.1e-35 122.3 0.0 2.9e-35 121.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|313126867|ref|YP_004037137.1| - 1e-26 92.8 0.1 1.5e-25 89.0 0.0 2.4 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|313126867|ref|YP_004037137.1| - 5.5e-06 26.4 0.0 9.9e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 gi|313126867|ref|YP_004037137.1| - 0.021 13.9 0.2 5.7 5.9 0.1 2.1 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase SpoU_sub_bind PF08032.12 gi|313126867|ref|YP_004037137.1| - 0.045 14.0 0.0 0.21 11.9 0.0 2.1 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding NBD_C PF17042.5 gi|313126867|ref|YP_004037137.1| - 0.11 13.1 1.7 0.86 10.1 0.5 2.5 1 1 0 2 2 2 0 Nucleotide-binding C-terminal domain CoA_binding_2 PF13380.6 gi|313126867|ref|YP_004037137.1| - 0.12 12.9 0.1 1 9.8 0.1 2.5 1 1 1 2 2 2 0 CoA binding domain Peptidase_M24 PF00557.24 gi|313126868|ref|YP_004037138.1| - 2e-66 223.6 0.5 2.6e-66 223.3 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|313126868|ref|YP_004037138.1| - 4.8e-29 101.7 0.0 1e-28 100.6 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain MFS_1 PF07690.16 gi|313126870|ref|YP_004037140.1| - 6.4e-59 199.7 59.4 8e-52 176.3 37.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|313126870|ref|YP_004037140.1| - 1.6e-10 40.4 5.4 1.6e-10 40.4 5.4 2.6 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|313126870|ref|YP_004037140.1| - 6.5e-06 25.2 9.0 6.5e-06 25.2 9.0 2.7 2 1 0 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|313126870|ref|YP_004037140.1| - 0.014 13.8 1.0 0.025 12.9 0.1 1.9 2 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family TRI12 PF06609.13 gi|313126870|ref|YP_004037140.1| - 0.15 10.4 5.3 0.12 10.8 2.0 2.0 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) Zn-ribbon_8 PF09723.10 gi|313126871|ref|YP_004037141.1| - 0.0059 16.7 1.0 0.0097 16.0 1.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-TFIIB PF13453.6 gi|313126871|ref|YP_004037141.1| - 0.05 12.9 0.4 7.6 6.0 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|313126871|ref|YP_004037141.1| - 0.058 13.3 0.5 10 6.2 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF2752 PF10825.8 gi|313126871|ref|YP_004037141.1| - 0.093 12.8 1.7 7.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Zn_Tnp_IS1595 PF12760.7 gi|313126871|ref|YP_004037141.1| - 0.094 12.7 3.5 1.2 9.2 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|313126871|ref|YP_004037141.1| - 0.28 10.6 4.7 0.53 9.8 0.8 2.1 2 0 0 2 2 2 0 zinc-ribbon domain HscB_4_cys PF18256.1 gi|313126871|ref|YP_004037141.1| - 0.32 10.9 4.3 0.48 10.3 1.4 2.1 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif TF_Zn_Ribbon PF08271.12 gi|313126871|ref|YP_004037141.1| - 0.36 10.4 3.9 1.7 8.2 0.8 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.7 gi|313126871|ref|YP_004037141.1| - 0.41 11.1 3.0 11 6.5 0.4 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prim_Zn_Ribbon PF08273.12 gi|313126871|ref|YP_004037141.1| - 0.43 10.9 7.8 5.8 7.3 4.7 2.6 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.11 gi|313126871|ref|YP_004037141.1| - 2 8.4 11.0 3.7 7.6 2.6 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.11 gi|313126871|ref|YP_004037141.1| - 2.5 7.8 8.6 0.28 10.9 2.5 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.6 gi|313126871|ref|YP_004037141.1| - 3.4 7.4 7.0 0.46 10.1 0.7 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding CBS PF00571.28 gi|313126873|ref|YP_004037143.1| - 3e-24 85.2 2.2 1.3e-11 44.7 0.7 2.8 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|313126873|ref|YP_004037143.1| - 7.8e-10 38.9 0.1 3.9e-09 36.7 0.1 2.1 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|313126873|ref|YP_004037143.1| - 0.00044 20.4 0.1 0.0035 17.4 0.1 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease DHH PF01368.20 gi|313126874|ref|YP_004037144.1| - 2.6e-13 50.1 0.0 5.1e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|313126874|ref|YP_004037144.1| - 1.1e-12 48.6 0.1 1.7e-11 44.7 0.1 2.4 2 1 1 3 3 3 1 DHHA1 domain TrkA_N PF02254.18 gi|313126874|ref|YP_004037144.1| - 4.7e-06 26.9 0.0 1.1e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|313126874|ref|YP_004037144.1| - 0.00028 21.3 0.0 0.00061 20.2 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding MotB_plug PF13677.6 gi|313126874|ref|YP_004037144.1| - 0.11 12.1 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB Proton_antipo_M PF00361.20 gi|313126876|ref|YP_004037146.1| - 7.9e-67 225.5 23.6 7.9e-67 225.5 23.6 2.0 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|313126876|ref|YP_004037146.1| - 3.2e-05 23.9 1.6 0.00014 21.8 1.6 2.2 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|313126877|ref|YP_004037147.1| - 1.6e-73 247.5 27.8 1.6e-73 247.5 27.8 1.6 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|313126877|ref|YP_004037147.1| - 0.0035 17.4 2.3 0.0035 17.4 2.3 3.3 3 1 0 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|313126878|ref|YP_004037148.1| - 5.5e-78 262.1 15.4 5.5e-78 262.1 15.4 2.8 2 1 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|313126878|ref|YP_004037148.1| - 4e-21 74.8 0.9 2e-17 63.0 0.1 3.1 2 0 0 2 2 2 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|313126878|ref|YP_004037148.1| - 0.0015 18.2 0.3 0.015 14.9 0.0 2.7 3 0 0 3 3 3 1 NADH dehydrogenase subunit 5 C-terminus Proton_antipo_C PF01010.19 gi|313126878|ref|YP_004037148.1| - 0.0036 17.0 0.0 0.009 15.7 0.0 1.7 1 1 0 1 1 1 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Oxidored_q2 PF00420.24 gi|313126879|ref|YP_004037149.1| - 1.1e-23 82.9 6.3 1.2e-23 82.8 6.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q3 PF00499.20 gi|313126880|ref|YP_004037150.1| - 4e-05 23.4 1.9 4.9e-05 23.1 1.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SseC PF04888.12 gi|313126880|ref|YP_004037150.1| - 1.7 8.2 5.2 1 8.9 0.3 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family PGF-CTERM PF18204.1 gi|313126880|ref|YP_004037150.1| - 5.2 7.2 10.1 0.95 9.5 0.9 2.9 2 0 0 2 2 2 0 PGF-CTERM motif Oxidored_q3 PF00499.20 gi|313126881|ref|YP_004037151.1| - 1.6e-18 66.8 6.6 1.6e-18 66.8 6.6 1.3 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|313126881|ref|YP_004037151.1| - 0.22 11.7 14.1 0.23 11.6 12.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) Fer4_7 PF12838.7 gi|313126882|ref|YP_004037152.1| - 1.9e-12 47.6 10.1 3e-12 47.0 10.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313126882|ref|YP_004037152.1| - 2e-12 46.3 9.6 1.4e-06 27.9 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313126882|ref|YP_004037152.1| - 1.1e-10 42.3 4.2 7.4e-06 26.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|313126882|ref|YP_004037152.1| - 1.5e-09 37.8 8.7 2.1e-09 37.3 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313126882|ref|YP_004037152.1| - 3.3e-09 36.8 22.1 1.7e-07 31.3 11.3 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313126882|ref|YP_004037152.1| - 2.1e-07 30.9 20.1 4.4e-06 26.7 11.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|313126882|ref|YP_004037152.1| - 1.2e-05 25.6 9.9 0.00083 19.7 12.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|313126882|ref|YP_004037152.1| - 1.6e-05 25.4 12.3 0.0063 17.0 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313126882|ref|YP_004037152.1| - 1.7e-05 24.7 13.7 0.0059 16.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|313126882|ref|YP_004037152.1| - 4.6e-05 23.3 12.0 0.0022 18.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|313126882|ref|YP_004037152.1| - 0.00018 21.8 13.6 0.0034 17.8 3.9 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|313126882|ref|YP_004037152.1| - 0.00023 21.9 14.6 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|313126882|ref|YP_004037152.1| - 0.0035 17.5 10.2 0.16 12.2 1.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|313126882|ref|YP_004037152.1| - 0.0041 17.9 3.9 0.35 11.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|313126882|ref|YP_004037152.1| - 0.054 13.6 8.1 0.19 11.9 8.1 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|313126882|ref|YP_004037152.1| - 0.16 12.5 12.8 0.55 10.8 1.5 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TNFR_c6 PF00020.18 gi|313126882|ref|YP_004037152.1| - 0.35 11.3 7.3 5.4 7.5 1.3 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region zf_PR_Knuckle PF18445.1 gi|313126882|ref|YP_004037152.1| - 6.3 6.7 7.2 23 4.9 1.3 2.5 2 0 0 2 2 2 0 PR zinc knuckle motif NADHdh PF00146.21 gi|313126883|ref|YP_004037153.1| - 4.9e-93 311.7 14.7 5.7e-93 311.5 14.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase PC_rep PF01851.22 gi|313126883|ref|YP_004037153.1| - 0.018 15.5 0.2 0.04 14.4 0.2 1.6 1 0 0 1 1 1 0 Proteasome/cyclosome repeat Complex1_49kDa PF00346.19 gi|313126884|ref|YP_004037154.1| - 1.9e-83 279.7 0.0 5e-82 275.0 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|313126884|ref|YP_004037154.1| - 3.8e-34 117.9 0.3 6.9e-34 117.1 0.3 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.15 gi|313126884|ref|YP_004037154.1| - 0.021 14.3 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 Autoinducer binding domain Oxidored_q6 PF01058.22 gi|313126885|ref|YP_004037155.1| - 1e-21 77.2 0.2 1.5e-21 76.6 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|313126886|ref|YP_004037156.1| - 6.3e-32 109.7 0.3 7.7e-32 109.4 0.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AIRC PF00731.20 gi|313126887|ref|YP_004037157.1| - 4.6e-50 169.1 0.0 5.9e-50 168.7 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase PUB PF09409.10 gi|313126887|ref|YP_004037157.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 PUB domain ATP-grasp PF02222.22 gi|313126888|ref|YP_004037158.1| - 4e-50 169.7 0.0 5.7e-50 169.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|313126888|ref|YP_004037158.1| - 1.6e-18 66.1 0.0 3.4e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|313126888|ref|YP_004037158.1| - 7.6e-08 32.6 0.0 1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|313126888|ref|YP_004037158.1| - 5.6e-07 29.1 0.0 1.2e-06 28.0 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.13 gi|313126888|ref|YP_004037158.1| - 5e-05 22.9 0.1 0.00021 20.9 0.1 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.6 gi|313126888|ref|YP_004037158.1| - 0.0015 19.0 0.0 0.0037 17.8 0.0 1.7 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|313126888|ref|YP_004037158.1| - 0.0097 15.8 0.1 0.02 14.8 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|313126888|ref|YP_004037158.1| - 0.053 14.1 0.1 0.2 12.2 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PMT_2 PF13231.6 gi|313126889|ref|YP_004037159.1| - 3.5e-14 53.3 5.5 3.5e-14 53.3 5.5 2.6 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EptA_B_N PF08019.12 gi|313126889|ref|YP_004037159.1| - 0.016 15.1 1.8 1.3 8.9 0.0 2.7 3 0 0 3 3 3 0 Phosphoethanolamine transferase EptA/EptB DMRL_synthase PF00885.19 gi|313126890|ref|YP_004037160.1| - 5.6e-33 113.7 1.0 6.1e-33 113.6 1.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FMN_red PF03358.15 gi|313126890|ref|YP_004037160.1| - 0.13 12.0 0.7 4.3 7.1 0.1 2.4 1 1 1 2 2 2 0 NADPH-dependent FMN reductase Aminotran_1_2 PF00155.21 gi|313126891|ref|YP_004037161.1| - 1.7e-63 215.0 0.0 2e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|313126891|ref|YP_004037161.1| - 1.3e-05 23.9 0.0 2.4e-05 23.1 0.0 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|313126891|ref|YP_004037161.1| - 0.00035 19.7 0.0 0.00061 18.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|313126891|ref|YP_004037161.1| - 0.00037 19.9 0.0 0.00069 19.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|313126891|ref|YP_004037161.1| - 0.034 13.5 0.1 0.057 12.7 0.1 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family MacB_PCD PF12704.7 gi|313126892|ref|YP_004037162.1| - 2.7e-23 83.4 2.9 2.7e-23 83.4 2.9 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|313126892|ref|YP_004037162.1| - 4.2e-11 43.2 2.6 4.2e-11 43.2 2.6 2.9 3 0 0 3 3 3 1 FtsX-like permease family DUF2207 PF09972.9 gi|313126892|ref|YP_004037162.1| - 0.18 10.6 1.2 2.4 6.8 1.2 2.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 gi|313126893|ref|YP_004037163.1| - 2e-35 122.3 0.0 2.7e-35 121.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|313126893|ref|YP_004037163.1| - 7.5e-07 28.8 0.2 5.7e-05 22.7 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|313126893|ref|YP_004037163.1| - 2.3e-05 24.4 0.5 0.046 13.5 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313126893|ref|YP_004037163.1| - 0.00021 21.0 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|313126893|ref|YP_004037163.1| - 0.00051 20.0 0.0 0.00081 19.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|313126893|ref|YP_004037163.1| - 0.0016 18.8 0.1 0.003 17.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|313126893|ref|YP_004037163.1| - 0.013 16.0 0.2 0.031 14.8 0.0 1.7 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|313126893|ref|YP_004037163.1| - 0.017 14.9 0.1 0.061 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|313126893|ref|YP_004037163.1| - 0.02 15.2 0.3 0.076 13.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|313126893|ref|YP_004037163.1| - 0.022 14.9 0.6 0.084 13.0 0.6 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|313126893|ref|YP_004037163.1| - 0.023 14.8 0.2 0.066 13.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313126893|ref|YP_004037163.1| - 0.039 13.5 0.1 0.46 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|313126893|ref|YP_004037163.1| - 0.09 12.5 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|313126893|ref|YP_004037163.1| - 0.098 13.2 0.0 0.3 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|313126893|ref|YP_004037163.1| - 0.13 11.0 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein SbcCD_C PF13558.6 gi|313126893|ref|YP_004037163.1| - 0.17 12.2 0.1 3 8.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|313126893|ref|YP_004037163.1| - 0.2 11.6 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain CARDB PF07705.11 gi|313126894|ref|YP_004037164.1| - 6.7e-09 35.9 12.6 0.0079 16.4 0.0 4.1 4 1 0 4 4 4 3 CARDB Transglut_C PF00927.22 gi|313126894|ref|YP_004037164.1| - 0.00026 21.1 0.2 2.4 8.3 0.1 3.4 3 1 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|313126894|ref|YP_004037164.1| - 0.048 13.9 9.7 0.063 13.5 0.5 5.0 5 1 0 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase GidB PF02527.15 gi|313126894|ref|YP_004037164.1| - 0.092 12.1 0.2 0.17 11.2 0.2 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G ASH PF15780.5 gi|313126894|ref|YP_004037164.1| - 0.39 11.0 8.6 0.23 11.7 0.6 3.1 3 0 0 3 3 3 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DEAD PF00270.29 gi|313126895|ref|YP_004037165.1| - 9.9e-20 71.0 0.0 1.8e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|313126895|ref|YP_004037165.1| - 9.1e-07 29.2 0.0 8.4e-06 26.1 0.0 2.3 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|313126895|ref|YP_004037165.1| - 2.5e-05 24.4 0.0 3.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RuBisCO_large PF00016.20 gi|313126896|ref|YP_004037166.1| - 1.2e-94 316.9 0.3 2.6e-94 315.8 0.3 1.5 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|313126896|ref|YP_004037166.1| - 1.8e-40 137.9 0.0 3.5e-40 136.9 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Glyco_hydro_97 PF10566.9 gi|313126896|ref|YP_004037166.1| - 0.016 14.5 0.1 0.033 13.5 0.0 1.4 1 1 0 1 1 1 0 Glycoside hydrolase 97 IF-2B PF01008.17 gi|313126898|ref|YP_004037168.1| - 7.1e-76 255.1 1.5 8.1e-76 254.9 1.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PYNP_C PF07831.13 gi|313126899|ref|YP_004037169.1| - 6.3e-11 41.8 0.0 1.2e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|313126899|ref|YP_004037169.1| - 7e-09 35.6 2.3 4.3e-08 33.1 2.3 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|313126899|ref|YP_004037169.1| - 7.7e-09 35.3 0.0 2.2e-08 33.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Molydop_binding PF01568.21 gi|313126899|ref|YP_004037169.1| - 0.00022 21.2 0.1 0.00051 20.0 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.9 gi|313126899|ref|YP_004037169.1| - 0.0011 17.8 0.0 0.002 17.0 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Thioredoxin PF00085.20 gi|313126900|ref|YP_004037170.1| - 2.6e-30 104.5 0.0 3.6e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|313126900|ref|YP_004037170.1| - 2e-08 34.7 0.1 1.4e-06 28.7 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|313126900|ref|YP_004037170.1| - 1.1e-06 28.9 0.0 0.0074 16.6 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|313126900|ref|YP_004037170.1| - 2.6e-06 27.4 0.0 4.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|313126900|ref|YP_004037170.1| - 0.00021 21.0 0.0 0.00027 20.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|313126900|ref|YP_004037170.1| - 0.00031 20.6 0.2 0.0011 18.8 0.0 1.8 1 1 1 2 2 2 1 DSBA-like thioredoxin domain HyaE PF07449.11 gi|313126900|ref|YP_004037170.1| - 0.00054 19.9 0.0 0.00086 19.3 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|313126900|ref|YP_004037170.1| - 0.00092 19.3 0.1 0.0021 18.2 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|313126900|ref|YP_004037170.1| - 0.002 18.0 0.0 0.0036 17.2 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family DUF836 PF05768.14 gi|313126900|ref|YP_004037170.1| - 0.004 17.5 0.0 0.0075 16.7 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|313126900|ref|YP_004037170.1| - 0.0044 17.0 0.0 0.0066 16.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain OST3_OST6 PF04756.13 gi|313126900|ref|YP_004037170.1| - 0.0085 15.5 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Phosducin PF02114.16 gi|313126900|ref|YP_004037170.1| - 0.019 13.9 0.0 0.029 13.3 0.0 1.3 1 1 0 1 1 1 0 Phosducin Thioredoxin_5 PF13743.6 gi|313126900|ref|YP_004037170.1| - 0.048 13.3 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DUF3149 PF11346.8 gi|313126901|ref|YP_004037171.1| - 0.17 11.5 3.9 0.25 11.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) HTH_20 PF12840.7 gi|313126902|ref|YP_004037172.1| - 1.1e-10 41.4 0.7 2.1e-10 40.5 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313126902|ref|YP_004037172.1| - 5.5e-06 26.1 0.1 1.1e-05 25.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313126902|ref|YP_004037172.1| - 0.0015 18.4 0.1 0.0019 18.0 0.1 1.3 1 0 0 1 1 1 1 MarR family ArsR PF09824.9 gi|313126902|ref|YP_004037172.1| - 0.0041 16.7 0.0 0.0044 16.6 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator TrmB PF01978.19 gi|313126902|ref|YP_004037172.1| - 0.011 15.6 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313126902|ref|YP_004037172.1| - 0.017 14.9 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|313126902|ref|YP_004037172.1| - 0.02 14.4 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1492 PF07374.11 gi|313126902|ref|YP_004037172.1| - 0.035 14.3 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_27 PF13463.6 gi|313126902|ref|YP_004037172.1| - 0.036 14.6 0.4 0.083 13.4 0.3 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.19 gi|313126902|ref|YP_004037172.1| - 0.058 13.5 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.6 gi|313126902|ref|YP_004037172.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PBP PF01161.20 gi|313126903|ref|YP_004037173.1| - 9.3e-35 119.8 0.0 1.2e-34 119.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Oxidored_FMN PF00724.20 gi|313126904|ref|YP_004037174.1| - 1.1e-33 116.9 0.0 4.7e-30 105.0 0.0 2.1 1 1 1 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|313126904|ref|YP_004037174.1| - 0.0089 15.2 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|313126904|ref|YP_004037174.1| - 0.014 14.9 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein Nudix_N_2 PF14803.6 gi|313126904|ref|YP_004037174.1| - 0.17 11.8 4.2 0.1 12.6 1.6 2.0 2 0 0 2 2 2 0 Nudix N-terminal Macro PF01661.21 gi|313126905|ref|YP_004037175.1| - 1.4e-26 92.9 0.0 1.9e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 Macro domain AP_endonuc_2 PF01261.24 gi|313126905|ref|YP_004037175.1| - 0.048 13.1 0.0 0.089 12.2 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_S9 PF00326.21 gi|313126906|ref|YP_004037176.1| - 9.1e-50 169.1 0.0 1.3e-49 168.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|313126906|ref|YP_004037176.1| - 3.5e-10 39.5 10.8 0.00061 19.7 0.1 5.7 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|313126906|ref|YP_004037176.1| - 8.8e-06 25.4 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|313126906|ref|YP_004037176.1| - 1.3e-05 24.9 0.0 0.095 12.3 0.1 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|313126906|ref|YP_004037176.1| - 8.9e-05 21.9 0.0 0.0027 17.0 0.0 2.3 2 0 0 2 2 2 1 Serine aminopeptidase, S33 DPPIV_N PF00930.21 gi|313126906|ref|YP_004037176.1| - 0.00047 19.0 0.0 1.8 7.2 0.0 3.6 2 2 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_1 PF00561.20 gi|313126906|ref|YP_004037176.1| - 0.05 13.3 0.1 0.33 10.6 0.0 2.1 2 0 0 2 2 2 0 alpha/beta hydrolase fold FSH1 PF03959.13 gi|313126906|ref|YP_004037176.1| - 0.071 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) WD40 PF00400.32 gi|313126906|ref|YP_004037176.1| - 0.52 11.3 2.4 19 6.4 0.1 4.1 5 0 0 5 5 5 0 WD domain, G-beta repeat Inositol_P PF00459.25 gi|313126907|ref|YP_004037177.1| - 2.9e-35 122.1 0.2 3.3e-35 121.9 0.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase_glpX PF03320.13 gi|313126907|ref|YP_004037177.1| - 0.048 12.5 0.0 0.072 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DUF4157 PF13699.6 gi|313126911|ref|YP_004037181.1| - 8.4e-32 109.2 1.2 2.8e-31 107.6 1.2 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) TipAS PF07739.13 gi|313126911|ref|YP_004037181.1| - 0.0038 17.7 0.1 0.045 14.3 0.0 2.7 3 0 0 3 3 3 1 TipAS antibiotic-recognition domain Flagellin_IN PF07196.13 gi|313126911|ref|YP_004037181.1| - 0.018 15.3 0.5 0.045 14.0 0.0 1.9 2 0 0 2 2 2 0 Flagellin hook IN motif ACT_6 PF13740.6 gi|313126911|ref|YP_004037181.1| - 0.039 13.9 0.1 0.11 12.4 0.1 1.9 1 0 0 1 1 1 0 ACT domain Ntox34 PF15606.6 gi|313126911|ref|YP_004037181.1| - 0.25 11.5 1.3 17 5.6 0.0 3.2 3 0 0 3 3 3 0 Bacterial toxin 34 Peptidase_M91 PF14891.6 gi|313126911|ref|YP_004037181.1| - 0.33 11.3 8.0 0.11 12.8 3.1 2.7 2 1 0 2 2 2 0 Effector protein PKHD_C PF18331.1 gi|313126911|ref|YP_004037181.1| - 1.4 9.1 3.2 6 7.0 0.3 2.9 2 1 0 2 2 2 0 PKHD-type hydroxylase C-terminal domain DUF2071 PF09844.9 gi|313126912|ref|YP_004037182.1| - 1.2e-69 234.2 0.9 2.6e-40 138.3 0.1 2.0 2 0 0 2 2 2 2 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|313126912|ref|YP_004037182.1| - 0.0029 17.2 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) CopD PF05425.13 gi|313126913|ref|YP_004037183.1| - 1.1e-07 32.2 4.7 1.1e-07 32.2 4.7 1.9 2 0 0 2 2 2 1 Copper resistance protein D Metallophos PF00149.28 gi|313126915|ref|YP_004037185.1| - 1.4e-16 61.6 1.7 1.8e-16 61.3 1.7 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|313126915|ref|YP_004037185.1| - 2.5e-09 37.6 0.1 2.5e-08 34.3 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF3670 PF12419.8 gi|313126916|ref|YP_004037186.1| - 0.034 14.0 0.5 0.083 12.7 0.5 1.7 1 1 0 1 1 1 0 SNF2 Helicase protein Ferredoxin_N PF16947.5 gi|313126916|ref|YP_004037186.1| - 0.091 12.9 0.3 0.21 11.7 0.3 1.5 1 0 0 1 1 1 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding bPH_2 PF03703.14 gi|313126917|ref|YP_004037187.1| - 2.8e-19 69.1 0.1 3.8e-19 68.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF1453 PF07301.11 gi|313126917|ref|YP_004037187.1| - 0.039 14.0 0.3 0.093 12.7 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1453) bPH_2 PF03703.14 gi|313126918|ref|YP_004037188.1| - 2.3e-47 159.1 3.2 1.3e-19 70.1 0.3 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|313126918|ref|YP_004037188.1| - 0.19 11.9 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial PH domain UbiA PF01040.18 gi|313126918|ref|YP_004037188.1| - 0.75 9.0 17.3 1.1 8.5 0.1 3.3 3 0 0 3 3 3 0 UbiA prenyltransferase family DUF2207 PF09972.9 gi|313126918|ref|YP_004037188.1| - 0.83 8.3 3.2 8.6 5.0 0.1 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) Glyoxalase PF00903.25 gi|313126919|ref|YP_004037189.1| - 0.0031 17.7 1.7 0.056 13.6 1.7 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Pro_CA PF00484.19 gi|313126920|ref|YP_004037190.1| - 3.3e-25 89.2 0.0 4.3e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase Aldolase PF01081.19 gi|313126921|ref|YP_004037191.1| - 3.8e-44 150.5 2.3 4.6e-44 150.2 2.3 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|313126921|ref|YP_004037191.1| - 0.0012 18.1 6.5 1.4 8.1 1.5 3.0 1 1 1 3 3 3 3 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|313126921|ref|YP_004037191.1| - 0.0023 17.3 1.7 0.08 12.3 1.7 3.0 1 1 0 1 1 1 1 Thiamine monophosphate synthase YaiA PF16362.5 gi|313126921|ref|YP_004037191.1| - 0.029 14.4 0.0 0.097 12.8 0.0 1.8 2 0 0 2 2 2 0 YaiA protein Ferritin_2 PF13668.6 gi|313126921|ref|YP_004037191.1| - 0.078 13.2 0.2 0.22 11.7 0.1 1.8 2 0 0 2 2 2 0 Ferritin-like domain ABC2_membrane PF01061.24 gi|313126922|ref|YP_004037192.1| - 1.2e-24 86.9 11.5 1.2e-24 86.9 11.5 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|313126922|ref|YP_004037192.1| - 4.4e-17 62.2 3.7 4.4e-17 62.2 3.7 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|313126922|ref|YP_004037192.1| - 8.6e-09 35.1 17.5 2.6e-08 33.5 17.1 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313126922|ref|YP_004037192.1| - 0.00015 21.8 3.9 0.00015 21.8 3.9 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|313126922|ref|YP_004037192.1| - 0.0037 16.4 2.8 0.0054 15.9 2.8 1.2 1 0 0 1 1 1 1 Membrane protein of 12 TMs DUF3792 PF12670.7 gi|313126922|ref|YP_004037192.1| - 0.83 9.8 11.5 0.19 11.9 3.7 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3792) DUF2678 PF10856.8 gi|313126922|ref|YP_004037192.1| - 1.6 8.6 6.4 0.15 12.0 1.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) DUF4282 PF14110.6 gi|313126922|ref|YP_004037192.1| - 4.9 8.0 15.7 0.98 10.2 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4282) ABC_tran PF00005.27 gi|313126923|ref|YP_004037193.1| - 1.2e-28 100.3 0.0 1.9e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313126923|ref|YP_004037193.1| - 1.2e-18 68.0 0.0 6.6e-12 45.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|313126923|ref|YP_004037193.1| - 0.00027 20.8 0.0 0.54 9.9 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|313126923|ref|YP_004037193.1| - 0.0006 20.4 0.4 0.00091 19.8 0.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313126923|ref|YP_004037193.1| - 0.0006 19.6 0.2 0.0013 18.4 0.2 1.7 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313126923|ref|YP_004037193.1| - 0.005 17.3 0.3 0.012 16.0 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|313126923|ref|YP_004037193.1| - 0.0057 16.4 0.3 0.012 15.3 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|313126923|ref|YP_004037193.1| - 0.0074 16.7 0.0 0.025 15.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|313126923|ref|YP_004037193.1| - 0.011 15.7 0.1 0.023 14.7 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|313126923|ref|YP_004037193.1| - 0.018 15.3 0.4 0.061 13.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313126923|ref|YP_004037193.1| - 0.021 15.0 0.2 0.034 14.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|313126923|ref|YP_004037193.1| - 0.048 13.7 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|313126923|ref|YP_004037193.1| - 0.052 13.8 0.1 0.087 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|313126923|ref|YP_004037193.1| - 0.058 12.8 0.0 0.56 9.6 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|313126923|ref|YP_004037193.1| - 0.06 13.1 0.0 0.99 9.1 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|313126923|ref|YP_004037193.1| - 0.09 12.7 0.2 0.15 12.0 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|313126923|ref|YP_004037193.1| - 0.11 12.2 0.1 0.71 9.6 0.2 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|313126923|ref|YP_004037193.1| - 0.12 11.7 0.0 0.25 10.7 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|313126923|ref|YP_004037193.1| - 0.19 11.3 0.5 0.31 10.6 0.5 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|313126923|ref|YP_004037193.1| - 0.25 11.1 0.2 0.37 10.5 0.2 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein GSDH PF07995.11 gi|313126924|ref|YP_004037194.1| - 2.8e-28 99.2 0.4 1.8e-18 67.0 0.0 2.2 2 0 0 2 2 2 2 Glucose / Sorbosone dehydrogenase PQQ_3 PF13570.6 gi|313126924|ref|YP_004037194.1| - 0.063 13.8 4.8 3.3 8.3 0.1 3.8 3 0 0 3 3 3 0 PQQ-like domain Aldo_ket_red PF00248.21 gi|313126925|ref|YP_004037195.1| - 2.1e-66 224.1 0.0 2.5e-66 223.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family YdjM PF04307.14 gi|313126926|ref|YP_004037196.1| - 0.00028 20.3 4.9 0.00039 19.8 4.9 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Rdx PF10262.9 gi|313126927|ref|YP_004037197.1| - 5.4e-16 58.6 0.0 6.2e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Rdx family DUF2387 PF09526.10 gi|313126927|ref|YP_004037197.1| - 0.0012 18.9 0.0 0.0023 18.1 0.0 1.5 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) DUF2157 PF09925.9 gi|313126928|ref|YP_004037198.1| - 5.3 6.8 15.2 4.9 6.9 4.2 2.5 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) UbiA PF01040.18 gi|313126929|ref|YP_004037199.1| - 4.5e-54 183.4 23.2 4.5e-54 183.4 23.2 3.0 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|313126929|ref|YP_004037199.1| - 9.1e-08 31.5 20.8 3.9e-05 22.9 10.1 4.4 2 2 2 4 4 4 3 Cytochrome oxidase assembly protein DUF5596 PF18082.1 gi|313126929|ref|YP_004037199.1| - 0.13 12.1 0.1 0.41 10.5 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF5596) Fumarate_red_C PF02300.17 gi|313126929|ref|YP_004037199.1| - 0.36 10.9 6.0 13 5.9 0.0 3.3 3 0 0 3 3 3 0 Fumarate reductase subunit C COX2 PF00116.20 gi|313126930|ref|YP_004037200.1| - 8.6e-21 74.1 2.4 1.6e-19 69.9 0.1 2.4 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|313126930|ref|YP_004037200.1| - 1.7e-14 53.7 0.5 3e-14 52.9 0.5 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Claudin_3 PF06653.11 gi|313126930|ref|YP_004037200.1| - 0.012 15.6 0.0 0.023 14.6 0.0 1.5 2 0 0 2 2 2 0 Tight junction protein, Claudin-like Cupredoxin_1 PF13473.6 gi|313126930|ref|YP_004037200.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain AgrB PF04647.15 gi|313126930|ref|YP_004037200.1| - 0.16 11.2 1.0 0.3 10.4 1.0 1.4 1 1 0 1 1 1 0 Accessory gene regulator B TrbC PF04956.13 gi|313126930|ref|YP_004037200.1| - 0.2 11.9 1.9 0.47 10.7 0.7 1.9 2 0 0 2 2 2 0 TrbC/VIRB2 family BPL_C PF02237.17 gi|313126931|ref|YP_004037201.1| - 1.2e-07 31.5 0.4 2.4e-07 30.5 0.4 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB PF03099.19 gi|313126931|ref|YP_004037201.1| - 3.4e-07 30.2 0.0 5.4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family CTP_transf_like PF01467.26 gi|313126932|ref|YP_004037202.1| - 4.6e-16 59.3 0.2 5.2e-16 59.1 0.2 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like Urm1 PF09138.11 gi|313126932|ref|YP_004037202.1| - 0.028 14.8 0.0 0.039 14.3 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) FAD_syn PF06574.12 gi|313126932|ref|YP_004037202.1| - 0.12 12.3 1.7 0.19 11.6 0.3 2.0 1 1 2 3 3 3 0 FAD synthetase Prok-JAB PF14464.6 gi|313126933|ref|YP_004037203.1| - 2.2e-10 40.3 0.0 2.9e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|313126933|ref|YP_004037203.1| - 0.00052 20.0 0.0 0.00081 19.3 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain JAB PF01398.21 gi|313126933|ref|YP_004037203.1| - 0.013 15.5 0.0 0.039 13.9 0.0 1.7 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Myofilin PF15929.5 gi|313126933|ref|YP_004037203.1| - 0.094 13.1 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Myofilin Fructosamin_kin PF03881.14 gi|313126934|ref|YP_004037204.1| - 3.3e-38 131.6 0.0 4.1e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|313126934|ref|YP_004037204.1| - 1.7e-18 67.4 2.5 2.3e-18 67.0 2.5 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 gi|313126934|ref|YP_004037204.1| - 0.00035 20.0 0.3 0.00083 18.8 0.3 1.5 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase RIO1 PF01163.22 gi|313126934|ref|YP_004037204.1| - 0.002 17.7 0.0 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 RIO1 family tRNA_anti-codon PF01336.25 gi|313126935|ref|YP_004037205.1| - 1.6e-07 31.2 0.0 3.1e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|313126935|ref|YP_004037205.1| - 3.7e-06 27.2 0.7 3.7e-06 27.2 0.7 1.8 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|313126935|ref|YP_004037205.1| - 0.0011 19.1 0.1 0.0022 18.2 0.1 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|313126935|ref|YP_004037205.1| - 0.071 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PLDc_2 PF13091.6 gi|313126936|ref|YP_004037206.1| - 6e-42 142.7 0.0 2.8e-23 82.3 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|313126936|ref|YP_004037206.1| - 2.3e-07 30.7 1.4 0.00037 20.5 0.2 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|313126936|ref|YP_004037206.1| - 0.0035 16.5 0.0 1.8 7.7 0.0 2.4 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB PP_kinase_C_1 PF17941.1 gi|313126936|ref|YP_004037206.1| - 0.0085 15.7 0.0 1.1 8.7 0.0 2.3 2 0 0 2 2 2 2 Polyphosphate kinase C-terminal domain 1 FAM83 PF07894.12 gi|313126936|ref|YP_004037206.1| - 0.011 15.3 0.0 0.037 13.6 0.0 1.7 1 1 0 1 1 1 0 FAM83 A-H Amidohydro_2 PF04909.14 gi|313126936|ref|YP_004037206.1| - 0.036 13.8 0.2 0.11 12.3 0.2 1.7 2 0 0 2 2 2 0 Amidohydrolase HEAT_2 PF13646.6 gi|313126937|ref|YP_004037207.1| - 8.2e-19 67.8 13.5 6.2e-11 42.5 3.3 3.7 2 1 2 4 4 4 3 HEAT repeats HEAT_PBS PF03130.16 gi|313126937|ref|YP_004037207.1| - 3.4e-12 45.8 19.1 0.001 19.5 1.3 6.4 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|313126937|ref|YP_004037207.1| - 3.7e-06 26.7 0.2 0.0079 16.4 0.1 4.0 4 0 0 4 4 4 1 HEAT repeat HEAT_EZ PF13513.6 gi|313126937|ref|YP_004037207.1| - 5.9e-05 23.5 3.4 0.00049 20.5 2.3 3.1 2 1 1 3 3 3 1 HEAT-like repeat Arm PF00514.23 gi|313126937|ref|YP_004037207.1| - 0.00096 19.1 0.0 0.019 15.0 0.0 2.4 2 0 0 2 2 2 1 Armadillo/beta-catenin-like repeat DNA_alkylation PF08713.11 gi|313126937|ref|YP_004037207.1| - 0.0042 16.8 0.9 0.0087 15.8 0.2 2.0 2 1 0 2 2 2 1 DNA alkylation repair enzyme G-gamma PF00631.22 gi|313126937|ref|YP_004037207.1| - 0.021 14.8 0.1 0.081 12.9 0.0 2.0 2 0 0 2 2 2 0 GGL domain DUF2730 PF10805.8 gi|313126937|ref|YP_004037207.1| - 0.12 12.4 0.3 0.39 10.8 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) CN_hydrolase PF00795.22 gi|313126938|ref|YP_004037208.1| - 1.9e-28 99.5 0.0 2.2e-28 99.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Peripla_BP_2 PF01497.18 gi|313126939|ref|YP_004037209.1| - 4.1e-21 75.6 0.0 5.5e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PQQ_3 PF13570.6 gi|313126939|ref|YP_004037209.1| - 0.95 10.0 4.2 0.66 10.5 0.2 2.8 4 0 0 4 4 4 0 PQQ-like domain Ferritin PF00210.24 gi|313126940|ref|YP_004037210.1| - 4.6e-32 110.9 5.1 5.3e-32 110.7 5.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|313126940|ref|YP_004037210.1| - 0.0095 16.3 0.2 0.041 14.2 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF2383) Fe_dep_repr_C PF02742.15 gi|313126940|ref|YP_004037210.1| - 0.045 13.8 3.8 0.11 12.5 0.4 2.8 3 0 0 3 3 3 0 Iron dependent repressor, metal binding and dimerisation domain HisKA PF00512.25 gi|313126940|ref|YP_004037210.1| - 0.91 9.6 3.6 4.9 7.3 0.3 2.9 2 2 1 3 3 3 0 His Kinase A (phospho-acceptor) domain Oxidored_FMN PF00724.20 gi|313126942|ref|YP_004037212.1| - 1.4e-65 221.9 0.0 1.5e-65 221.7 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|313126942|ref|YP_004037212.1| - 0.012 14.7 0.0 0.023 13.8 0.0 1.4 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) DUF4965 PF16335.5 gi|313126942|ref|YP_004037212.1| - 0.019 14.6 0.0 5.8 6.5 0.0 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4965) OB_aCoA_assoc PF01796.17 gi|313126944|ref|YP_004037214.1| - 8.6e-09 35.3 0.9 1.3e-08 34.7 0.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|313126945|ref|YP_004037215.1| - 4.6e-56 190.1 0.0 6.3e-56 189.6 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|313126945|ref|YP_004037215.1| - 4.3e-09 36.1 0.1 2.5e-08 33.6 0.1 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|313126945|ref|YP_004037215.1| - 0.00016 21.7 0.3 0.24 11.4 0.0 3.3 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|313126945|ref|YP_004037215.1| - 0.068 12.7 1.8 0.79 9.3 0.8 2.3 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Acyl_transf_3 PF01757.22 gi|313126946|ref|YP_004037216.1| - 0.082 12.0 11.4 0.1 11.6 11.4 1.0 1 0 0 1 1 1 0 Acyltransferase family Pox_A14 PF05767.12 gi|313126946|ref|YP_004037216.1| - 0.88 9.8 3.4 10 6.3 0.5 2.3 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 MFS_1 PF07690.16 gi|313126947|ref|YP_004037217.1| - 7.1e-36 123.8 37.1 4e-26 91.8 17.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|313126947|ref|YP_004037217.1| - 5.2e-05 21.8 17.4 0.0011 17.4 7.9 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 gi|313126947|ref|YP_004037217.1| - 5.8e-05 22.5 24.2 0.0006 19.2 23.2 2.5 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|313126947|ref|YP_004037217.1| - 0.00017 20.6 17.0 0.0011 17.9 7.9 2.9 2 1 0 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|313126947|ref|YP_004037217.1| - 0.16 10.2 10.6 0.28 9.4 2.7 2.6 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Pyr_redox_2 PF07992.14 gi|313126948|ref|YP_004037218.1| - 5.1e-33 114.6 0.0 6.6e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313126948|ref|YP_004037218.1| - 8.6e-15 54.8 0.0 2.3e-09 36.9 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313126948|ref|YP_004037218.1| - 2.6e-08 34.3 0.2 0.0044 17.5 0.5 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313126948|ref|YP_004037218.1| - 3e-07 30.4 3.3 0.00012 21.8 1.5 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313126948|ref|YP_004037218.1| - 4.6e-07 29.3 4.8 4.9e-05 22.6 1.5 2.9 2 1 1 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|313126948|ref|YP_004037218.1| - 5.1e-05 22.8 0.6 5.1e-05 22.8 0.6 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|313126948|ref|YP_004037218.1| - 6.1e-05 22.3 0.3 0.00011 21.4 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|313126948|ref|YP_004037218.1| - 6.4e-05 21.8 0.4 0.00056 18.7 0.5 2.0 2 0 0 2 2 2 1 HI0933-like protein K_oxygenase PF13434.6 gi|313126948|ref|YP_004037218.1| - 0.0001 21.6 0.0 0.0023 17.1 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|313126948|ref|YP_004037218.1| - 0.00042 19.7 0.7 0.0008 18.7 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|313126948|ref|YP_004037218.1| - 0.002 17.5 0.8 0.0073 15.6 1.0 1.9 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|313126948|ref|YP_004037218.1| - 0.0021 17.4 0.2 0.012 14.9 0.1 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|313126948|ref|YP_004037218.1| - 0.0021 18.2 0.2 0.0064 16.7 0.2 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|313126948|ref|YP_004037218.1| - 0.018 15.0 1.2 1.1 9.2 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|313126948|ref|YP_004037218.1| - 0.033 13.3 0.1 0.045 12.8 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein HCBP_related PF06594.11 gi|313126948|ref|YP_004037218.1| - 0.12 12.3 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain NAD_binding_7 PF13241.6 gi|313126948|ref|YP_004037218.1| - 0.16 12.4 0.0 7.3 7.1 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding Methyltransf_25 PF13649.6 gi|313126949|ref|YP_004037219.1| - 1.8e-21 76.6 0.1 4e-21 75.5 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313126949|ref|YP_004037219.1| - 6.5e-21 74.8 0.1 1.1e-20 74.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313126949|ref|YP_004037219.1| - 8.1e-12 45.2 0.0 1.1e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313126949|ref|YP_004037219.1| - 8.5e-11 42.5 0.0 1.6e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313126949|ref|YP_004037219.1| - 3.6e-10 39.9 0.0 4.8e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313126949|ref|YP_004037219.1| - 6.8e-09 35.4 0.0 9.8e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|313126949|ref|YP_004037219.1| - 0.00024 20.6 0.0 0.00031 20.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|313126949|ref|YP_004037219.1| - 0.00092 18.8 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|313126949|ref|YP_004037219.1| - 0.0022 17.9 0.0 0.013 15.4 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase DREV PF05219.12 gi|313126949|ref|YP_004037219.1| - 0.0033 16.5 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_17 PF12692.7 gi|313126949|ref|YP_004037219.1| - 0.0077 16.2 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine methyltransferase PCMT PF01135.19 gi|313126949|ref|YP_004037219.1| - 0.018 14.8 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|313126949|ref|YP_004037219.1| - 0.027 14.4 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.11 gi|313126949|ref|YP_004037219.1| - 0.13 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF2087 PF09860.9 gi|313126949|ref|YP_004037219.1| - 0.13 12.4 0.0 0.32 11.2 0.0 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2087) T2SSF PF00482.23 gi|313126950|ref|YP_004037220.1| - 8.3e-39 132.4 6.8 1.1e-20 73.9 2.1 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|313126950|ref|YP_004037220.1| - 0.81 8.4 3.7 8.1 5.1 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) T2SSE PF00437.20 gi|313126951|ref|YP_004037221.1| - 2.3e-45 154.8 0.0 3.8e-45 154.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|313126951|ref|YP_004037221.1| - 0.17 11.4 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region GGDEF_2 PF17853.1 gi|313126951|ref|YP_004037221.1| - 0.32 11.3 2.3 1.1e+02 3.1 0.1 4.0 5 0 0 5 5 5 0 GGDEF-like domain UDG PF03167.19 gi|313126954|ref|YP_004037224.1| - 1.5e-12 47.7 0.0 1.8e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|313126954|ref|YP_004037224.1| - 0.023 14.2 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) DUF4097 PF13349.6 gi|313126955|ref|YP_004037225.1| - 2.1e-06 27.3 2.7 0.0014 18.1 1.2 2.2 1 1 1 2 2 2 2 Putative adhesin BACON PF13004.7 gi|313126955|ref|YP_004037225.1| - 0.28 11.2 4.0 0.27 11.2 1.4 2.2 2 0 0 2 2 2 0 Putative binding domain, N-terminal Lactamase_B PF00753.27 gi|313126956|ref|YP_004037226.1| - 7.2e-26 91.4 2.8 8.5e-26 91.2 2.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313126956|ref|YP_004037226.1| - 0.0001 21.9 0.7 0.00015 21.4 0.7 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|313126956|ref|YP_004037226.1| - 0.0023 17.4 0.0 0.0035 16.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain DnaJ PF00226.31 gi|313126957|ref|YP_004037227.1| - 4.4e-22 78.0 1.1 6.3e-22 77.5 1.1 1.2 1 0 0 1 1 1 1 DnaJ domain SPX PF03105.19 gi|313126957|ref|YP_004037227.1| - 0.051 13.5 14.2 0.065 13.2 14.2 1.2 1 0 0 1 1 1 0 SPX domain Presenilin PF01080.17 gi|313126957|ref|YP_004037227.1| - 0.84 8.3 7.1 0.029 13.1 1.4 1.5 2 0 0 2 2 2 0 Presenilin SOG2 PF10428.9 gi|313126957|ref|YP_004037227.1| - 2.2 7.4 20.1 2.7 7.1 20.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Hid1 PF12722.7 gi|313126957|ref|YP_004037227.1| - 3 5.9 5.1 4.1 5.4 5.1 1.2 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF572 PF04502.13 gi|313126957|ref|YP_004037227.1| - 5.1 6.6 9.3 6.7 6.2 9.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) DUF3040 PF11239.8 gi|313126958|ref|YP_004037228.1| - 0.14 12.5 2.3 1.5 9.1 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF2892 PF11127.8 gi|313126958|ref|YP_004037228.1| - 1.7 8.7 9.7 0.2 11.7 3.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) Lactamase_B PF00753.27 gi|313126959|ref|YP_004037229.1| - 3.4e-17 63.1 10.9 1.1e-16 61.4 10.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313126959|ref|YP_004037229.1| - 0.017 14.7 5.6 0.027 14.0 2.5 2.6 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|313126959|ref|YP_004037229.1| - 0.18 11.2 0.1 0.29 10.6 0.1 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain RNA_pol_L_2 PF13656.6 gi|313126960|ref|YP_004037230.1| - 4.2e-16 58.5 0.0 4.9e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|313126960|ref|YP_004037230.1| - 1.3e-06 27.8 0.0 2.4e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1684 PF07920.11 gi|313126961|ref|YP_004037231.1| - 1.7e-52 177.4 0.1 2.3e-52 177.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) His_biosynth PF00977.21 gi|313126962|ref|YP_004037232.1| - 5.9e-82 274.6 0.1 6.8e-82 274.4 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|313126962|ref|YP_004037232.1| - 2.5e-09 36.7 0.0 3.2e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|313126962|ref|YP_004037232.1| - 4.7e-08 32.6 0.1 5.7e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|313126962|ref|YP_004037232.1| - 3e-07 30.2 0.3 5.1e-05 22.8 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|313126962|ref|YP_004037232.1| - 0.00028 20.3 0.0 0.00096 18.6 0.0 1.7 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|313126962|ref|YP_004037232.1| - 0.00054 19.3 0.0 0.0051 16.1 0.0 2.0 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|313126962|ref|YP_004037232.1| - 0.0038 16.7 0.1 0.0063 16.0 0.1 1.3 1 0 0 1 1 1 1 PcrB family IMPDH PF00478.25 gi|313126962|ref|YP_004037232.1| - 0.021 13.8 0.1 0.043 12.8 0.0 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|313126962|ref|YP_004037232.1| - 0.026 13.8 0.1 0.28 10.5 0.0 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase Glu_synthase PF01645.17 gi|313126962|ref|YP_004037232.1| - 0.053 12.7 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase CbtA PF09490.10 gi|313126963|ref|YP_004037233.1| - 0.027 14.2 0.0 0.03 14.1 0.0 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) ADH_zinc_N PF00107.26 gi|313126964|ref|YP_004037234.1| - 2e-29 102.2 0.1 1e-28 99.9 0.0 2.0 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|313126964|ref|YP_004037234.1| - 4e-22 79.7 0.1 7.9e-22 78.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|313126964|ref|YP_004037234.1| - 2e-10 40.5 0.1 5.8e-10 39.0 0.1 1.9 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AIRS PF00586.24 gi|313126965|ref|YP_004037235.1| - 1.1e-43 147.8 5.2 2e-23 82.8 0.1 3.4 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|313126965|ref|YP_004037235.1| - 2.3e-35 122.0 14.1 2.7e-31 108.8 2.8 2.7 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|313126965|ref|YP_004037235.1| - 4.9e-08 33.4 0.0 1.6e-07 31.7 0.0 2.0 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain CBS PF00571.28 gi|313126966|ref|YP_004037236.1| - 2e-26 92.2 3.1 5.1e-13 49.2 0.2 2.2 2 0 0 2 2 2 2 CBS domain PHP_C PF13263.6 gi|313126967|ref|YP_004037237.1| - 5.7e-21 74.0 0.3 5.3e-20 70.9 0.3 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|313126967|ref|YP_004037237.1| - 3.4e-08 34.0 0.0 3.8e-08 33.8 0.0 1.2 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.21 gi|313126968|ref|YP_004037238.1| - 6.8e-31 108.2 3.2 8.1e-20 71.8 0.5 2.1 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|313126968|ref|YP_004037238.1| - 0.017 14.3 0.2 0.029 13.5 0.2 1.3 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|313126968|ref|YP_004037238.1| - 0.22 10.3 0.2 0.33 9.7 0.2 1.3 1 0 0 1 1 1 0 tRNA methyl transferase NUDIX PF00293.28 gi|313126969|ref|YP_004037239.1| - 1.5e-13 50.9 0.1 2.2e-13 50.4 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.19 gi|313126970|ref|YP_004037240.1| - 6.1e-40 135.1 0.1 2.9e-19 68.9 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313126970|ref|YP_004037240.1| - 1.5e-18 66.0 3.7 3.1e-18 65.0 3.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|313126970|ref|YP_004037240.1| - 0.0003 20.2 1.3 0.0062 16.0 0.1 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_C PF02984.19 gi|313126970|ref|YP_004037240.1| - 0.0052 16.9 0.0 2.6 8.1 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain zf-ribbon_3 PF13248.6 gi|313126970|ref|YP_004037240.1| - 0.0054 16.1 2.5 0.037 13.4 2.5 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Cyclin_N PF00134.23 gi|313126970|ref|YP_004037240.1| - 0.026 14.3 0.0 0.098 12.4 0.0 1.9 2 0 0 2 2 2 0 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|313126970|ref|YP_004037240.1| - 0.048 13.6 0.6 0.11 12.5 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|313126970|ref|YP_004037240.1| - 0.054 13.5 0.6 0.1 12.6 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|313126970|ref|YP_004037240.1| - 0.13 11.9 1.2 7 6.3 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|313126970|ref|YP_004037240.1| - 0.14 12.3 4.2 0.39 10.9 0.5 2.4 1 1 2 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|313126970|ref|YP_004037240.1| - 0.46 10.3 2.6 11 5.9 2.7 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain Glu-tRNAGln PF02686.15 gi|313126971|ref|YP_004037241.1| - 1e-16 60.9 4.5 1.6e-16 60.3 4.5 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|313126972|ref|YP_004037242.1| - 6e-143 477.1 1.5 7.2e-143 476.8 1.5 1.0 1 0 0 1 1 1 1 Amidase AglB_L1 PF18079.1 gi|313126973|ref|YP_004037243.1| - 0.00069 19.8 0.4 0.0011 19.3 0.4 1.4 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PGF-CTERM PF18204.1 gi|313126973|ref|YP_004037243.1| - 0.046 13.7 4.6 0.046 13.7 4.6 2.3 3 0 0 3 3 3 0 PGF-CTERM motif zf-ZPR1 PF03367.13 gi|313126973|ref|YP_004037243.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 ZPR1 zinc-finger domain TrkA_N PF02254.18 gi|313126974|ref|YP_004037244.1| - 1.1e-27 96.5 1.1 2.1e-27 95.7 1.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|313126974|ref|YP_004037244.1| - 1.3e-17 63.3 0.2 9.2e-16 57.4 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|313126974|ref|YP_004037244.1| - 3.8e-06 27.4 0.2 8.1e-06 26.3 0.2 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|313126974|ref|YP_004037244.1| - 3.5e-05 24.2 0.1 9.1e-05 22.9 0.1 1.7 2 0 0 2 2 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|313126974|ref|YP_004037244.1| - 4.8e-05 23.6 0.2 7.4e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|313126974|ref|YP_004037244.1| - 0.0002 21.3 0.1 0.00032 20.6 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|313126974|ref|YP_004037244.1| - 0.00039 20.5 0.1 0.00073 19.6 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|313126974|ref|YP_004037244.1| - 0.00097 19.6 0.0 0.0015 19.0 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|313126974|ref|YP_004037244.1| - 0.0012 19.4 0.4 0.017 15.7 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.6 gi|313126974|ref|YP_004037244.1| - 0.0023 17.8 0.4 0.0038 17.1 0.4 1.5 1 1 0 1 1 1 1 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|313126974|ref|YP_004037244.1| - 0.0027 17.3 0.3 0.033 13.8 0.1 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|313126974|ref|YP_004037244.1| - 0.0032 17.6 0.0 0.0053 16.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|313126974|ref|YP_004037244.1| - 0.0037 18.1 0.0 0.0059 17.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|313126974|ref|YP_004037244.1| - 0.0045 17.0 0.0 0.35 10.8 0.1 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|313126974|ref|YP_004037244.1| - 0.005 16.2 0.4 0.0078 15.5 0.4 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|313126974|ref|YP_004037244.1| - 0.0057 16.2 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family ApbA PF02558.16 gi|313126974|ref|YP_004037244.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|313126974|ref|YP_004037244.1| - 0.015 14.5 0.1 0.023 13.9 0.1 1.2 1 0 0 1 1 1 0 Thi4 family 2-Hacid_dh_C PF02826.19 gi|313126974|ref|YP_004037244.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peripla_BP_3 PF13377.6 gi|313126974|ref|YP_004037244.1| - 0.032 14.5 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein-like domain TPALS PF18178.1 gi|313126974|ref|YP_004037244.1| - 0.059 12.8 0.1 0.089 12.2 0.1 1.2 1 0 0 1 1 1 0 TIR- and PNP-associating SLOG family TrkH PF02386.16 gi|313126975|ref|YP_004037245.1| - 6.6e-109 364.6 13.7 8.5e-109 364.3 13.7 1.1 1 0 0 1 1 1 1 Cation transport protein adh_short_C2 PF13561.6 gi|313126976|ref|YP_004037246.1| - 4.2e-68 229.4 1.3 5e-68 229.2 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313126976|ref|YP_004037246.1| - 3.9e-58 196.1 1.4 4.6e-58 195.9 1.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313126976|ref|YP_004037246.1| - 1.8e-21 76.8 0.4 2.2e-21 76.6 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313126976|ref|YP_004037246.1| - 0.0045 16.5 0.1 0.0079 15.7 0.2 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|313126976|ref|YP_004037246.1| - 0.032 14.1 0.6 0.099 12.5 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|313126976|ref|YP_004037246.1| - 0.098 12.0 0.3 0.78 9.0 0.0 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.15 gi|313126976|ref|YP_004037246.1| - 0.14 12.0 2.2 0.35 10.7 2.2 1.7 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF3372 PF11852.8 gi|313126976|ref|YP_004037246.1| - 0.15 11.5 0.5 0.56 9.7 0.0 2.0 2 1 1 3 3 3 0 Domain of unknown function (DUF3372) TrkH PF02386.16 gi|313126977|ref|YP_004037247.1| - 2.4e-70 237.4 7.7 3.2e-70 237.0 7.7 1.1 1 0 0 1 1 1 1 Cation transport protein DUF5353 PF17304.2 gi|313126977|ref|YP_004037247.1| - 0.012 15.3 0.2 0.096 12.4 0.2 2.6 1 0 0 1 1 1 0 Family of unknown function (DUF5353) TrkA_N PF02254.18 gi|313126978|ref|YP_004037248.1| - 1.4e-51 173.6 11.1 4.9e-28 97.7 1.3 3.1 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|313126978|ref|YP_004037248.1| - 6.8e-27 93.1 10.2 6.8e-15 54.7 0.1 3.5 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|313126978|ref|YP_004037248.1| - 2.4e-12 47.2 2.5 7.7e-06 26.3 0.6 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|313126978|ref|YP_004037248.1| - 2.6e-12 47.0 2.0 1.1e-05 25.5 0.2 3.0 3 1 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|313126978|ref|YP_004037248.1| - 3.1e-10 40.2 6.5 0.00015 21.7 0.2 2.7 3 0 0 3 3 2 2 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|313126978|ref|YP_004037248.1| - 1.8e-09 37.9 1.1 0.00035 20.8 0.2 2.8 2 2 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|313126978|ref|YP_004037248.1| - 1e-07 32.5 3.2 8.8e-05 23.0 0.2 3.9 4 1 0 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|313126978|ref|YP_004037248.1| - 1.4e-07 31.1 0.1 0.0032 16.8 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain XdhC_C PF13478.6 gi|313126978|ref|YP_004037248.1| - 1.1e-06 29.2 0.8 0.0021 18.6 0.1 2.6 2 0 0 2 2 2 2 XdhC Rossmann domain ApbA PF02558.16 gi|313126978|ref|YP_004037248.1| - 1.3e-05 24.8 0.1 0.00017 21.2 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|313126978|ref|YP_004037248.1| - 2.4e-05 24.1 0.5 0.0012 18.5 0.1 2.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|313126978|ref|YP_004037248.1| - 2.8e-05 24.6 0.4 0.47 11.0 0.0 3.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|313126978|ref|YP_004037248.1| - 0.00011 21.6 2.8 0.16 11.2 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|313126978|ref|YP_004037248.1| - 0.00016 21.4 0.1 0.00062 19.4 0.2 2.0 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|313126978|ref|YP_004037248.1| - 0.00016 21.6 0.5 0.022 14.7 0.2 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|313126978|ref|YP_004037248.1| - 0.00025 20.4 1.2 0.35 10.1 1.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|313126978|ref|YP_004037248.1| - 0.0005 20.3 0.3 0.087 13.0 0.1 2.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|313126978|ref|YP_004037248.1| - 0.00095 19.2 0.0 0.078 13.0 0.0 2.6 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.25 gi|313126978|ref|YP_004037248.1| - 0.0015 18.1 0.1 0.1 12.0 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase GFO_IDH_MocA PF01408.22 gi|313126978|ref|YP_004037248.1| - 0.0015 19.3 0.2 0.081 13.8 0.1 2.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|313126978|ref|YP_004037248.1| - 0.0026 18.2 2.6 0.28 11.6 0.1 2.8 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|313126978|ref|YP_004037248.1| - 0.0032 17.7 0.1 0.48 10.7 0.0 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|313126978|ref|YP_004037248.1| - 0.0063 15.9 0.0 1.5 8.1 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2325 PF10087.9 gi|313126978|ref|YP_004037248.1| - 0.0071 16.4 0.0 0.4 10.8 0.0 3.2 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2325) Epimerase PF01370.21 gi|313126978|ref|YP_004037248.1| - 0.013 15.0 0.6 0.22 10.9 0.1 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Pyr_redox_3 PF13738.6 gi|313126978|ref|YP_004037248.1| - 0.022 14.0 0.1 2.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.9 gi|313126978|ref|YP_004037248.1| - 0.023 14.6 2.2 1.2 9.0 0.1 2.9 3 0 0 3 3 2 0 Rossmann-like domain HEM4 PF02602.15 gi|313126978|ref|YP_004037248.1| - 0.034 13.5 0.2 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Castor_Poll_mid PF06241.12 gi|313126978|ref|YP_004037248.1| - 0.039 13.9 0.0 11 6.0 0.0 2.6 2 0 0 2 2 2 0 Castor and Pollux, part of voltage-gated ion channel YflT PF11181.8 gi|313126978|ref|YP_004037248.1| - 0.044 14.3 0.8 0.34 11.4 0.0 2.7 3 0 0 3 3 3 0 Heat induced stress protein YflT DUF1188 PF06690.11 gi|313126978|ref|YP_004037248.1| - 0.064 12.8 0.1 0.17 11.4 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF1188) Oxidored_nitro PF00148.19 gi|313126978|ref|YP_004037248.1| - 0.079 11.7 0.3 0.38 9.4 0.1 2.0 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase PglD_N PF17836.1 gi|313126978|ref|YP_004037248.1| - 0.13 12.9 0.6 1.9 9.2 0.3 2.7 2 0 0 2 2 2 0 PglD N-terminal domain ThiF PF00899.21 gi|313126978|ref|YP_004037248.1| - 0.17 11.2 5.1 4.2 6.7 0.4 3.4 3 1 1 4 4 4 0 ThiF family PcrB PF01884.17 gi|313126979|ref|YP_004037249.1| - 6.5e-41 140.2 0.7 1.2e-40 139.4 0.7 1.4 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|313126979|ref|YP_004037249.1| - 0.00016 21.2 0.0 0.00033 20.2 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|313126979|ref|YP_004037249.1| - 0.0043 16.0 0.0 0.18 10.6 0.0 2.4 3 0 0 3 3 3 1 Tryptophan synthase alpha chain IMPDH PF00478.25 gi|313126979|ref|YP_004037249.1| - 0.007 15.4 2.1 0.33 9.9 0.0 2.6 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Dus PF01207.17 gi|313126979|ref|YP_004037249.1| - 0.15 11.1 0.0 0.34 10.0 0.0 1.5 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Polyketide_cyc2 PF10604.9 gi|313126980|ref|YP_004037250.1| - 2.2e-12 47.4 0.2 2.9e-12 47.1 0.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|313126980|ref|YP_004037250.1| - 1.7e-09 38.0 0.2 4.2e-09 36.7 0.2 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|313126980|ref|YP_004037250.1| - 0.024 14.9 0.1 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein FliT PF05400.13 gi|313126981|ref|YP_004037251.1| - 0.078 13.8 0.1 19 6.2 0.0 2.4 2 0 0 2 2 2 0 Flagellar protein FliT Pyr_redox_2 PF07992.14 gi|313126982|ref|YP_004037252.1| - 1.1e-12 47.9 4.2 5.8e-07 29.0 0.3 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313126982|ref|YP_004037252.1| - 9.8e-10 38.1 3.7 1.4e-07 31.0 1.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|313126982|ref|YP_004037252.1| - 5e-07 29.3 3.5 5e-05 22.7 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|313126982|ref|YP_004037252.1| - 3.3e-05 23.4 2.5 3.3e-05 23.4 2.5 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|313126982|ref|YP_004037252.1| - 6.1e-05 22.3 0.2 0.00011 21.4 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|313126982|ref|YP_004037252.1| - 0.00019 21.6 0.1 0.00048 20.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|313126982|ref|YP_004037252.1| - 0.00052 19.7 11.6 0.0013 18.4 0.6 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|313126982|ref|YP_004037252.1| - 0.0014 18.0 0.3 0.0054 16.0 0.1 2.0 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|313126982|ref|YP_004037252.1| - 0.002 17.4 0.3 0.0044 16.3 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|313126982|ref|YP_004037252.1| - 0.0028 16.4 0.1 0.0044 15.8 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|313126982|ref|YP_004037252.1| - 0.0058 15.7 0.9 0.0093 15.0 0.2 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|313126982|ref|YP_004037252.1| - 0.01 16.3 0.2 0.01 16.3 0.2 2.2 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313126982|ref|YP_004037252.1| - 0.012 14.9 0.1 0.11 11.8 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|313126982|ref|YP_004037252.1| - 0.02 13.8 5.2 1.1 8.0 1.8 2.2 1 1 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|313126982|ref|YP_004037252.1| - 0.078 12.9 0.2 0.34 10.8 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|313126983|ref|YP_004037253.1| - 2e-48 164.7 5.3 2.6e-48 164.3 0.8 2.5 3 0 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|313126983|ref|YP_004037253.1| - 9.5e-35 119.7 0.2 1.5e-34 119.0 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein PhaG_MnhG_YufB PF03334.14 gi|313126984|ref|YP_004037254.1| - 2.7e-24 85.2 8.7 3.7e-24 84.7 8.7 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit TarH PF02203.15 gi|313126984|ref|YP_004037254.1| - 0.061 13.2 0.2 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 Tar ligand binding domain homologue MrpF_PhaF PF04066.13 gi|313126985|ref|YP_004037255.1| - 1.7e-20 73.1 7.4 1.7e-20 73.1 7.4 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) SYS1 PF09801.9 gi|313126985|ref|YP_004037255.1| - 0.038 14.1 1.2 0.046 13.9 1.2 1.0 1 0 0 1 1 1 0 Integral membrane protein S linking to the trans Golgi network MNHE PF01899.16 gi|313126986|ref|YP_004037256.1| - 1.2e-42 145.1 2.4 1.4e-42 144.9 2.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF2955 PF11168.8 gi|313126986|ref|YP_004037256.1| - 0.079 12.8 1.2 0.11 12.3 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2955) Proton_antipo_M PF00361.20 gi|313126987|ref|YP_004037257.1| - 4.5e-50 170.5 21.9 4.5e-50 170.5 21.9 2.7 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|313126987|ref|YP_004037257.1| - 0.0055 16.7 0.3 0.0055 16.7 0.3 4.0 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MlaD PF02470.20 gi|313126987|ref|YP_004037257.1| - 0.15 12.4 0.1 2.2 8.6 0.0 2.3 2 0 0 2 2 2 0 MlaD protein Oxidored_q2 PF00420.24 gi|313126988|ref|YP_004037258.1| - 3.8e-31 106.8 2.8 4.4e-31 106.6 2.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Phage_holin_2_3 PF16080.5 gi|313126988|ref|YP_004037258.1| - 0.64 9.8 0.2 0.64 9.8 0.2 2.5 2 1 0 2 2 2 0 Bacteriophage holin family HP1 TrbC PF04956.13 gi|313126988|ref|YP_004037258.1| - 1.1 9.5 6.3 0.52 10.6 1.4 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family MnhB PF04039.13 gi|313126989|ref|YP_004037259.1| - 7.4e-36 123.2 10.7 8.6e-36 123.0 10.7 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Proton_antipo_M PF00361.20 gi|313126990|ref|YP_004037260.1| - 4.7e-70 236.1 20.5 4.7e-70 236.1 20.5 2.9 2 1 1 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|313126990|ref|YP_004037260.1| - 4.3e-16 58.8 10.8 4.3e-16 58.8 10.8 5.7 6 1 1 7 7 7 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|313126990|ref|YP_004037260.1| - 2e-12 47.0 1.5 6.2e-12 45.4 0.0 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_20 PF12840.7 gi|313126991|ref|YP_004037261.1| - 2e-08 34.2 0.5 2.9e-08 33.7 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313126991|ref|YP_004037261.1| - 4.9e-07 29.5 0.2 6.8e-07 29.1 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313126991|ref|YP_004037261.1| - 8.2e-07 28.7 0.1 1.2e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313126991|ref|YP_004037261.1| - 5e-06 26.0 0.0 7.2e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313126991|ref|YP_004037261.1| - 6.8e-05 22.7 0.1 8.6e-05 22.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|313126991|ref|YP_004037261.1| - 0.00015 21.6 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313126991|ref|YP_004037261.1| - 0.00022 21.1 0.0 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|313126991|ref|YP_004037261.1| - 0.00039 20.3 0.1 0.00079 19.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_29 PF13551.6 gi|313126991|ref|YP_004037261.1| - 0.00042 20.3 0.0 0.00063 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|313126991|ref|YP_004037261.1| - 0.00042 20.4 0.0 0.00077 19.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|313126991|ref|YP_004037261.1| - 0.00052 19.7 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|313126991|ref|YP_004037261.1| - 0.00066 19.5 0.0 0.0011 18.7 0.0 1.5 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain RP-C PF03428.13 gi|313126991|ref|YP_004037261.1| - 0.00072 19.2 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain FUR PF01475.19 gi|313126991|ref|YP_004037261.1| - 0.00078 19.6 0.0 0.00091 19.4 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Rrf2 PF02082.20 gi|313126991|ref|YP_004037261.1| - 0.0011 19.2 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|313126991|ref|YP_004037261.1| - 0.002 18.1 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313126991|ref|YP_004037261.1| - 0.0043 16.4 0.0 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|313126991|ref|YP_004037261.1| - 0.0051 16.7 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_30 PF13556.6 gi|313126991|ref|YP_004037261.1| - 0.0052 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GntR PF00392.21 gi|313126991|ref|YP_004037261.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|313126991|ref|YP_004037261.1| - 0.026 14.3 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain TFIIE_alpha PF02002.17 gi|313126991|ref|YP_004037261.1| - 0.038 13.8 0.0 0.048 13.5 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Mga PF05043.13 gi|313126991|ref|YP_004037261.1| - 0.068 13.8 0.0 0.16 12.6 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313126991|ref|YP_004037261.1| - 0.076 12.7 0.1 0.16 11.7 0.0 1.6 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|313126991|ref|YP_004037261.1| - 0.076 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1492 PF07374.11 gi|313126991|ref|YP_004037261.1| - 0.15 12.2 0.0 0.34 11.1 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1492) Pribosyltran PF00156.27 gi|313126993|ref|YP_004037263.1| - 3.7e-18 65.5 2.3 5.4e-18 65.0 2.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|313126993|ref|YP_004037263.1| - 0.00035 20.1 0.1 0.00049 19.6 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|313126993|ref|YP_004037263.1| - 0.017 14.6 0.8 0.025 14.1 0.8 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase SBP_bac_5 PF00496.22 gi|313126994|ref|YP_004037264.1| - 1.1e-55 189.2 6.9 1.4e-55 188.8 6.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313126994|ref|YP_004037264.1| - 0.12 12.3 0.9 0.2 11.6 0.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|313126995|ref|YP_004037265.1| - 5.1e-31 107.9 10.3 5.1e-31 107.9 10.3 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.21 gi|313126995|ref|YP_004037265.1| - 0.021 15.3 3.4 0.021 15.3 3.4 3.3 3 1 0 3 3 3 0 FtsX-like permease family Bac_export_3 PF01313.19 gi|313126995|ref|YP_004037265.1| - 0.05 13.5 0.1 0.05 13.5 0.1 3.2 4 0 0 4 4 4 0 Bacterial export proteins, family 3 DUF1471 PF07338.13 gi|313126995|ref|YP_004037265.1| - 0.14 12.1 0.5 0.98 9.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) TPR_2 PF07719.17 gi|313126995|ref|YP_004037265.1| - 0.2 11.8 0.4 0.5 10.6 0.4 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat CPBP PF02517.16 gi|313126995|ref|YP_004037265.1| - 0.32 11.4 5.2 25 5.3 5.1 2.8 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease CD225 PF04505.12 gi|313126995|ref|YP_004037265.1| - 1.5 9.1 0.0 1.5 9.1 0.0 3.3 3 0 0 3 3 3 0 Interferon-induced transmembrane protein BPD_transp_1 PF00528.22 gi|313126996|ref|YP_004037266.1| - 3.5e-29 101.8 5.0 3.5e-29 101.8 5.0 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313126996|ref|YP_004037266.1| - 1.4e-07 31.4 0.0 1.4e-07 31.4 0.0 4.2 4 1 1 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|313126997|ref|YP_004037267.1| - 5.1e-26 91.8 0.0 7.4e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313126997|ref|YP_004037267.1| - 1.4e-17 63.9 0.3 3.2e-17 62.8 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313126997|ref|YP_004037267.1| - 1e-05 25.6 0.1 0.00027 20.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313126997|ref|YP_004037267.1| - 0.0012 18.4 0.0 0.0028 17.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313126997|ref|YP_004037267.1| - 0.0022 18.3 0.2 0.04 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313126997|ref|YP_004037267.1| - 0.0046 17.4 0.0 0.0091 16.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|313126997|ref|YP_004037267.1| - 0.039 13.7 0.2 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.14 gi|313126997|ref|YP_004037267.1| - 0.041 13.9 0.0 0.091 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|313126997|ref|YP_004037267.1| - 0.046 13.5 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|313126997|ref|YP_004037267.1| - 0.053 13.4 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|313126997|ref|YP_004037267.1| - 0.065 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|313126997|ref|YP_004037267.1| - 0.065 12.9 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|313126997|ref|YP_004037267.1| - 0.13 11.9 0.3 0.55 9.9 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|313126997|ref|YP_004037267.1| - 0.15 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain ABC_tran PF00005.27 gi|313126998|ref|YP_004037268.1| - 1.2e-33 116.6 0.0 1.8e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313126998|ref|YP_004037268.1| - 2.7e-19 69.4 0.1 6.5e-19 68.2 0.1 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313126998|ref|YP_004037268.1| - 5.5e-05 23.1 0.5 0.00047 20.1 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313126998|ref|YP_004037268.1| - 0.00013 22.2 0.1 0.002 18.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313126998|ref|YP_004037268.1| - 0.0048 17.3 0.2 0.021 15.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ATP-synt_ab PF00006.25 gi|313126998|ref|YP_004037268.1| - 0.067 12.8 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 gi|313126998|ref|YP_004037268.1| - 0.088 12.4 0.1 0.35 10.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain UxaC PF02614.14 gi|313126998|ref|YP_004037268.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Glucuronate isomerase RsgA_GTPase PF03193.16 gi|313126998|ref|YP_004037268.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|313126998|ref|YP_004037268.1| - 0.21 11.1 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2909 PF11137.8 gi|313126998|ref|YP_004037268.1| - 0.22 11.5 0.4 0.46 10.4 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) AAA_13 PF13166.6 gi|313126998|ref|YP_004037268.1| - 0.28 9.8 0.0 0.47 9.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.24 gi|313126999|ref|YP_004037269.1| - 4.3e-12 46.1 1.6 2.5e-10 40.4 1.6 2.3 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|313126999|ref|YP_004037269.1| - 1.1e-07 31.8 0.0 4e-06 26.6 0.0 2.3 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|313126999|ref|YP_004037269.1| - 0.17 11.4 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTH_5 PF01022.20 gi|313127000|ref|YP_004037270.1| - 4e-05 23.4 0.0 6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313127000|ref|YP_004037270.1| - 5.4e-05 23.2 0.1 0.00012 22.1 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|313127000|ref|YP_004037270.1| - 0.0015 18.4 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|313127000|ref|YP_004037270.1| - 0.0056 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|313127000|ref|YP_004037270.1| - 0.026 14.3 0.1 0.036 13.9 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain zf-trcl PF13451.6 gi|313127000|ref|YP_004037270.1| - 0.034 14.0 1.0 0.034 14.0 1.0 2.0 1 1 1 2 2 2 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|313127000|ref|YP_004037270.1| - 2.1 8.1 7.0 2.2 8.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain NTP_transferase PF00483.23 gi|313127001|ref|YP_004037271.1| - 2.7e-39 135.2 0.0 3.6e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313127001|ref|YP_004037271.1| - 9.5e-09 35.8 0.0 1.2e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Pentapeptide_3 PF13576.6 gi|313127001|ref|YP_004037271.1| - 0.034 14.3 0.5 0.25 11.5 0.0 2.6 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) IspD PF01128.19 gi|313127001|ref|YP_004037271.1| - 0.13 11.9 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Diphthami_syn_2 PF01902.17 gi|313127002|ref|YP_004037272.1| - 1.2e-57 194.9 0.0 2.2e-57 194.1 0.0 1.3 1 1 0 1 1 1 1 Diphthamide synthase ComA PF02679.15 gi|313127002|ref|YP_004037272.1| - 0.18 11.2 0.0 1.2 8.6 0.0 2.0 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) ThiI PF02568.14 gi|313127002|ref|YP_004037272.1| - 0.22 11.1 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|313127003|ref|YP_004037273.1| - 2.3e-21 76.6 0.0 8.4e-19 68.3 0.0 2.8 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|313127003|ref|YP_004037273.1| - 0.062 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase ATP_bind_3 PF01171.20 gi|313127003|ref|YP_004037273.1| - 0.079 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.19 gi|313127004|ref|YP_004037274.1| - 8.1e-20 71.6 0.0 3.7e-16 59.7 0.0 3.0 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|313127004|ref|YP_004037274.1| - 0.041 13.4 0.0 0.17 11.3 0.0 2.0 2 0 0 2 2 2 0 Diphthamide synthase ATP_bind_3 PF01171.20 gi|313127004|ref|YP_004037274.1| - 0.076 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 PP-loop family F_bP_aldolase PF01116.20 gi|313127004|ref|YP_004037274.1| - 0.21 11.1 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II Glutaredoxin PF00462.24 gi|313127006|ref|YP_004037276.1| - 3.8e-15 55.8 0.0 6.4e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Pribosyltran PF00156.27 gi|313127007|ref|YP_004037277.1| - 6.7e-17 61.5 0.1 1.2e-16 60.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|313127007|ref|YP_004037277.1| - 0.00017 21.3 0.0 0.00045 19.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|313127007|ref|YP_004037277.1| - 0.0062 16.6 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase PRTase_2 PF15609.6 gi|313127007|ref|YP_004037277.1| - 0.013 15.0 0.1 0.033 13.7 0.1 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase HTH_24 PF13412.6 gi|313127007|ref|YP_004037277.1| - 0.024 14.2 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|313127007|ref|YP_004037277.1| - 0.025 14.5 0.1 0.11 12.5 0.1 2.1 2 0 0 2 2 2 0 HTH domain UPRTase PF14681.6 gi|313127007|ref|YP_004037277.1| - 0.029 13.8 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Sigma70_r4 PF04545.16 gi|313127007|ref|YP_004037277.1| - 0.03 13.9 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|313127007|ref|YP_004037277.1| - 0.056 13.4 0.0 0.45 10.5 0.0 2.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|313127007|ref|YP_004037277.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 MarR family Glu_dehyd_C PF16912.5 gi|313127008|ref|YP_004037278.1| - 3.9e-102 340.2 0.0 5e-102 339.8 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|313127008|ref|YP_004037278.1| - 9.8e-11 41.5 0.0 1.5e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313127008|ref|YP_004037278.1| - 7.8e-06 25.9 0.0 1.2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|313127008|ref|YP_004037278.1| - 0.00054 19.8 0.1 0.0011 18.8 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Lyase_1 PF00206.20 gi|313127009|ref|YP_004037279.1| - 2.7e-49 168.3 0.0 3.3e-49 168.0 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|313127009|ref|YP_004037279.1| - 2.1e-41 140.6 0.0 3.8e-41 139.8 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ScsC_N PF18312.1 gi|313127009|ref|YP_004037279.1| - 0.027 14.3 0.2 0.067 13.0 0.2 1.7 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain MRFAP1 PF15155.6 gi|313127009|ref|YP_004037279.1| - 0.067 13.7 0.4 0.23 12.0 0.1 2.0 2 0 0 2 2 2 0 MORF4 family-associated protein1 AICARFT_IMPCHas PF01808.18 gi|313127010|ref|YP_004037280.1| - 2.8e-85 286.3 0.0 3.7e-85 286.0 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|313127010|ref|YP_004037280.1| - 2.1e-41 141.6 0.0 4.6e-41 140.5 0.0 1.5 2 0 0 2 2 2 1 Formyl transferase Usp PF00582.26 gi|313127011|ref|YP_004037281.1| - 2.1e-33 115.8 3.0 2.3e-33 115.7 3.0 1.0 1 0 0 1 1 1 1 Universal stress protein family IPT PF01745.16 gi|313127011|ref|YP_004037281.1| - 0.034 13.5 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase Pterin_bind PF00809.22 gi|313127012|ref|YP_004037282.1| - 9.9e-78 261.2 0.2 1.6e-77 260.5 0.2 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|313127012|ref|YP_004037282.1| - 1.7e-17 64.0 0.0 3.1e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|313127012|ref|YP_004037282.1| - 5e-10 39.5 0.0 1.8e-09 37.8 0.0 2.0 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain TANGO2 PF05742.12 gi|313127013|ref|YP_004037283.1| - 3.1e-24 86.4 0.0 1.8e-23 83.9 0.0 1.8 1 1 0 1 1 1 1 Transport and Golgi organisation 2 MarR PF01047.22 gi|313127014|ref|YP_004037284.1| - 0.0068 16.3 0.0 0.0093 15.9 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|313127014|ref|YP_004037284.1| - 0.09 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Proteasome PF00227.26 gi|313127016|ref|YP_004037286.1| - 9.3e-60 201.4 0.0 1.2e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|313127016|ref|YP_004037286.1| - 9.1e-14 50.8 0.1 1.5e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|313127017|ref|YP_004037287.1| - 3.6e-21 75.3 0.0 4.7e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Methyltransf_25 PF13649.6 gi|313127018|ref|YP_004037288.1| - 1.4e-19 70.5 0.1 3.1e-19 69.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127018|ref|YP_004037288.1| - 4e-17 62.4 0.0 5.7e-17 61.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313127018|ref|YP_004037288.1| - 9.2e-16 58.3 0.1 2.6e-15 56.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313127018|ref|YP_004037288.1| - 1.2e-11 45.2 0.0 2.8e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313127018|ref|YP_004037288.1| - 1.3e-09 37.7 0.0 2.4e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|313127018|ref|YP_004037288.1| - 1.1e-07 31.9 0.0 3.2e-07 30.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|313127018|ref|YP_004037288.1| - 1.3e-07 31.3 0.1 2e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|313127018|ref|YP_004037288.1| - 0.00011 21.8 0.1 0.00015 21.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|313127018|ref|YP_004037288.1| - 0.00067 19.6 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|313127018|ref|YP_004037288.1| - 0.00079 19.2 0.1 0.0099 15.6 0.1 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.20 gi|313127018|ref|YP_004037288.1| - 0.00082 18.5 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|313127018|ref|YP_004037288.1| - 0.0015 18.5 0.0 0.0023 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|313127018|ref|YP_004037288.1| - 0.0028 16.7 0.0 0.0045 16.0 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DREV PF05219.12 gi|313127018|ref|YP_004037288.1| - 0.0075 15.4 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.20 gi|313127018|ref|YP_004037288.1| - 0.012 15.0 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|313127018|ref|YP_004037288.1| - 0.015 14.8 0.0 0.053 13.0 0.0 1.9 2 1 0 2 2 2 0 Putative methyltransferase PCMT PF01135.19 gi|313127018|ref|YP_004037288.1| - 0.022 14.5 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.9 gi|313127018|ref|YP_004037288.1| - 0.19 11.5 0.0 0.44 10.3 0.0 1.7 2 0 0 2 2 2 0 Lysine methyltransferase MethyltransfD12 PF02086.15 gi|313127018|ref|YP_004037288.1| - 0.21 11.3 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase RNase_P_p30 PF01876.16 gi|313127019|ref|YP_004037289.1| - 3.7e-37 127.9 0.0 6e-37 127.2 0.0 1.3 1 1 0 1 1 1 1 RNase P subunit p30 Peptidase_M20 PF01546.28 gi|313127021|ref|YP_004037291.1| - 4.1e-21 75.6 0.6 7.7e-21 74.7 0.6 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|313127021|ref|YP_004037291.1| - 6.7e-18 64.6 0.0 1.9e-17 63.2 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain DAP_epimerase PF01678.19 gi|313127022|ref|YP_004037292.1| - 7e-48 161.8 2.4 1.3e-23 83.5 0.4 2.7 2 1 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|313127022|ref|YP_004037292.1| - 0.0038 16.3 0.2 0.65 9.0 0.1 2.2 2 0 0 2 2 2 2 Proline racemase Orn_Arg_deC_N PF02784.16 gi|313127023|ref|YP_004037293.1| - 1.9e-40 138.8 0.0 2.4e-40 138.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|313127023|ref|YP_004037293.1| - 2.9e-24 85.1 0.0 3.1e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|313127023|ref|YP_004037293.1| - 7.8e-08 32.2 0.1 1.4e-07 31.4 0.1 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain EccE PF11203.8 gi|313127023|ref|YP_004037293.1| - 0.04 14.3 2.9 0.22 11.9 1.1 2.8 1 1 2 3 3 3 0 Putative type VII ESX secretion system translocon, EccE THDPS_N_2 PF14805.6 gi|313127024|ref|YP_004037294.1| - 1.1e-21 76.9 0.1 1.6e-21 76.3 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|313127024|ref|YP_004037294.1| - 3.9e-10 39.1 3.2 0.00034 20.2 0.3 3.5 2 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313127024|ref|YP_004037294.1| - 4.2e-05 23.2 7.6 0.0016 18.1 0.5 3.5 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|313127025|ref|YP_004037295.1| - 6.3e-35 119.8 0.0 8.3e-35 119.4 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|313127025|ref|YP_004037295.1| - 3.1e-29 101.6 0.1 5.4e-29 100.8 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|313127025|ref|YP_004037295.1| - 1.4e-05 25.7 0.3 2.6e-05 24.9 0.3 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|313127025|ref|YP_004037295.1| - 0.00029 21.7 0.0 0.00056 20.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|313127025|ref|YP_004037295.1| - 0.00044 20.5 0.1 0.0029 17.8 0.1 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding PF02629.19 gi|313127025|ref|YP_004037295.1| - 0.002 18.7 0.2 0.0044 17.7 0.2 1.5 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|313127025|ref|YP_004037295.1| - 0.0033 17.8 0.1 0.011 16.2 0.1 1.8 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|313127025|ref|YP_004037295.1| - 0.0047 16.1 0.0 0.0079 15.3 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|313127025|ref|YP_004037295.1| - 0.0068 15.9 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|313127025|ref|YP_004037295.1| - 0.014 15.4 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase CoA_binding_2 PF13380.6 gi|313127025|ref|YP_004037295.1| - 0.021 15.3 0.3 0.031 14.8 0.3 1.3 1 0 0 1 1 1 0 CoA binding domain Gp_dh_N PF00044.24 gi|313127025|ref|YP_004037295.1| - 0.077 13.3 0.9 0.21 11.9 0.1 2.2 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DHDPS PF00701.22 gi|313127026|ref|YP_004037296.1| - 2.9e-94 315.0 0.0 3.3e-94 314.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|313127026|ref|YP_004037296.1| - 0.022 14.0 0.0 0.042 13.2 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG NYN PF01936.18 gi|313127027|ref|YP_004037297.1| - 5.2e-38 130.8 0.2 6.3e-38 130.5 0.2 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.19 gi|313127027|ref|YP_004037297.1| - 0.0051 15.3 0.1 0.0064 15.0 0.1 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like DUF2529 PF10740.9 gi|313127027|ref|YP_004037297.1| - 0.069 12.8 0.1 0.22 11.2 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) DUF3810 PF12725.7 gi|313127028|ref|YP_004037298.1| - 8.9 5.6 6.7 4.1 6.7 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) TGT_C2 PF14810.6 gi|313127030|ref|YP_004037300.1| - 2e-26 91.9 0.0 3.5e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|313127030|ref|YP_004037300.1| - 2.6e-15 56.1 0.2 4.2e-15 55.5 0.2 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|313127030|ref|YP_004037300.1| - 0.068 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain SPP PF06550.11 gi|313127031|ref|YP_004037301.1| - 2.7e-89 299.4 12.0 3.9e-89 298.9 12.0 1.2 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|313127031|ref|YP_004037301.1| - 2.4e-06 27.3 6.5 0.00018 21.1 2.3 2.6 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|313127031|ref|YP_004037301.1| - 0.067 11.9 9.7 54 2.4 12.3 3.0 2 1 0 2 2 2 0 Presenilin Gar1 PF04410.14 gi|313127032|ref|YP_004037302.1| - 3.8e-10 39.7 0.0 4e-10 39.7 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|313127032|ref|YP_004037302.1| - 0.1 12.7 0.1 0.19 11.8 0.0 1.5 2 0 0 2 2 2 0 PRC-barrel domain SRP19 PF01922.17 gi|313127033|ref|YP_004037303.1| - 9.8e-25 87.3 0.0 1.2e-24 87.1 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.18 gi|313127034|ref|YP_004037304.1| - 9.9e-32 110.4 1.3 9.9e-32 110.4 1.3 1.5 2 0 0 2 2 2 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|313127034|ref|YP_004037304.1| - 1.1e-07 31.6 3.0 2.1e-07 30.7 3.0 1.5 1 0 0 1 1 1 1 PGF-CTERM motif Peripla_BP_4 PF13407.6 gi|313127034|ref|YP_004037304.1| - 0.0015 18.2 0.2 0.0015 18.2 0.2 2.1 1 1 0 2 2 2 1 Periplasmic binding protein domain RIFIN PF02009.16 gi|313127034|ref|YP_004037304.1| - 0.81 9.5 4.2 1.2 8.9 4.2 1.3 1 0 0 1 1 1 0 Rifin FecCD PF01032.18 gi|313127035|ref|YP_004037305.1| - 4.1e-90 302.0 34.4 5.1e-90 301.6 34.4 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|313127035|ref|YP_004037305.1| - 4.9e-06 26.2 18.4 4.9e-06 26.2 18.4 1.9 1 1 1 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|313127036|ref|YP_004037306.1| - 5.1e-31 108.0 0.0 8.1e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313127036|ref|YP_004037306.1| - 9.4e-09 35.5 3.1 1.6e-05 24.9 0.5 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313127036|ref|YP_004037306.1| - 1.2e-05 24.8 0.0 4e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313127036|ref|YP_004037306.1| - 1.9e-05 25.1 0.2 4.3e-05 24.0 0.2 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|313127036|ref|YP_004037306.1| - 0.00015 22.3 0.0 0.00022 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|313127036|ref|YP_004037306.1| - 0.00089 19.0 1.7 0.0031 17.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|313127036|ref|YP_004037306.1| - 0.0018 18.5 0.0 0.0071 16.6 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|313127036|ref|YP_004037306.1| - 0.0022 17.7 0.1 0.0053 16.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|313127036|ref|YP_004037306.1| - 0.0057 15.5 0.3 2.5 6.8 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|313127036|ref|YP_004037306.1| - 0.0069 15.8 0.1 0.015 14.7 0.1 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|313127036|ref|YP_004037306.1| - 0.013 15.2 0.1 0.053 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|313127036|ref|YP_004037306.1| - 0.017 15.4 0.9 0.14 12.4 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313127036|ref|YP_004037306.1| - 0.018 15.5 0.1 0.15 12.5 0.0 2.3 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|313127036|ref|YP_004037306.1| - 0.022 14.3 0.9 0.16 11.6 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NAD_binding_7 PF13241.6 gi|313127036|ref|YP_004037306.1| - 0.031 14.7 1.2 0.13 12.7 0.5 2.4 2 1 1 3 3 3 0 Putative NAD(P)-binding T2SSE PF00437.20 gi|313127036|ref|YP_004037306.1| - 0.041 13.0 0.0 0.075 12.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_27 PF13514.6 gi|313127036|ref|YP_004037306.1| - 0.043 13.4 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|313127036|ref|YP_004037306.1| - 0.066 13.1 0.3 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|313127036|ref|YP_004037306.1| - 0.066 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Nitro_FeMo-Co PF02579.17 gi|313127036|ref|YP_004037306.1| - 0.084 13.2 0.6 7.7 6.9 0.2 2.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor RsgA_GTPase PF03193.16 gi|313127036|ref|YP_004037306.1| - 0.085 12.8 0.2 0.2 11.6 0.2 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|313127036|ref|YP_004037306.1| - 0.1 12.8 1.3 0.34 11.1 0.4 2.4 2 1 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.23 gi|313127036|ref|YP_004037306.1| - 0.12 12.5 0.2 0.33 11.1 0.2 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|313127036|ref|YP_004037306.1| - 0.14 12.7 0.0 0.31 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|313127036|ref|YP_004037306.1| - 0.16 12.0 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|313127036|ref|YP_004037306.1| - 0.23 10.1 0.0 3.3 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain TFIIB PF00382.19 gi|313127037|ref|YP_004037307.1| - 8.2e-38 128.3 0.1 2.3e-18 66.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313127037|ref|YP_004037307.1| - 1e-17 63.3 3.5 2.2e-17 62.3 3.5 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|313127037|ref|YP_004037307.1| - 3.1e-05 24.0 0.0 0.043 13.9 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Cyclin_N PF00134.23 gi|313127037|ref|YP_004037307.1| - 0.00034 20.4 0.0 0.0035 17.1 0.0 2.1 2 0 0 2 2 2 1 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|313127037|ref|YP_004037307.1| - 0.026 14.0 0.1 0.5 9.9 0.0 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 zf-NADH-PPase PF09297.11 gi|313127037|ref|YP_004037307.1| - 0.18 11.5 0.1 0.39 10.4 0.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|313127037|ref|YP_004037307.1| - 0.24 11.0 0.9 11 5.7 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|313127037|ref|YP_004037307.1| - 3 8.0 4.9 4.8 7.4 0.6 2.4 1 1 2 3 3 3 0 Zinc ribbon domain NTP_transf_3 PF12804.7 gi|313127038|ref|YP_004037308.1| - 1.7e-37 129.2 0.4 2.2e-37 128.9 0.4 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|313127038|ref|YP_004037308.1| - 0.00049 20.1 0.0 0.0012 18.8 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase Met_10 PF02475.16 gi|313127040|ref|YP_004037310.1| - 4.4e-52 176.7 0.1 3.4e-51 173.9 0.1 2.0 1 1 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|313127040|ref|YP_004037310.1| - 1.3e-11 44.2 0.0 2.7e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|313127040|ref|YP_004037310.1| - 1.9e-08 34.9 0.0 6.1e-08 33.3 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|313127040|ref|YP_004037310.1| - 2.9e-07 30.2 0.0 5.3e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|313127040|ref|YP_004037310.1| - 5.2e-07 29.6 0.0 1.4e-06 28.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|313127040|ref|YP_004037310.1| - 1.8e-06 27.7 0.0 2.6e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|313127040|ref|YP_004037310.1| - 1.1e-05 25.0 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|313127040|ref|YP_004037310.1| - 3.3e-05 23.6 0.0 7.5e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|313127040|ref|YP_004037310.1| - 7.7e-05 23.3 0.0 0.0002 22.0 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|313127040|ref|YP_004037310.1| - 8.8e-05 22.3 0.1 0.00018 21.3 0.1 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|313127040|ref|YP_004037310.1| - 0.00092 18.5 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|313127040|ref|YP_004037310.1| - 0.0012 18.5 0.2 0.0048 16.6 0.0 2.0 3 0 0 3 3 3 1 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|313127040|ref|YP_004037310.1| - 0.0021 17.4 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|313127040|ref|YP_004037310.1| - 0.0071 16.2 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|313127040|ref|YP_004037310.1| - 0.0083 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|313127040|ref|YP_004037310.1| - 0.04 14.9 4.9 0.26 12.3 0.1 2.9 2 1 1 3 3 3 0 Methyltransferase domain TPMT PF05724.11 gi|313127040|ref|YP_004037310.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) adh_short PF00106.25 gi|313127040|ref|YP_004037310.1| - 0.14 11.5 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Methyltransf_12 PF08242.12 gi|313127040|ref|YP_004037310.1| - 0.15 12.9 0.0 0.31 11.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PQQ_2 PF13360.6 gi|313127042|ref|YP_004037312.1| - 1.4e-21 77.2 7.2 1.6e-14 54.1 1.0 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|313127042|ref|YP_004037312.1| - 2.2e-13 50.3 11.0 0.0085 16.6 0.0 6.2 6 0 0 6 6 6 4 PQQ-like domain PQQ PF01011.21 gi|313127042|ref|YP_004037312.1| - 1.5e-07 31.0 0.5 0.0036 17.2 0.0 4.7 5 0 0 5 5 5 1 PQQ enzyme repeat PTS_EIIA_1 PF00358.20 gi|313127042|ref|YP_004037312.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TP_methylase PF00590.20 gi|313127043|ref|YP_004037313.1| - 3e-20 73.1 1.3 3.8e-20 72.7 1.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.10 gi|313127044|ref|YP_004037314.1| - 3.2e-23 82.6 17.3 4.3e-23 82.2 17.3 1.2 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PGF-CTERM PF18204.1 gi|313127045|ref|YP_004037315.1| - 1e-07 31.7 7.7 2.1e-07 30.6 7.7 1.6 1 0 0 1 1 1 1 PGF-CTERM motif CopC PF04234.12 gi|313127045|ref|YP_004037315.1| - 0.066 14.3 0.7 0.066 14.3 0.7 6.6 5 3 3 8 8 8 0 CopC domain DUF3244 PF11589.8 gi|313127045|ref|YP_004037315.1| - 2.7 8.1 13.9 3.3 7.9 0.2 6.2 4 1 1 7 7 7 0 Domain of unknown function (DUF3244) Glyoxalase PF00903.25 gi|313127046|ref|YP_004037316.1| - 1.8e-19 70.2 3.2 3e-12 46.9 0.2 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313127046|ref|YP_004037316.1| - 5.7e-09 36.2 2.1 0.0016 18.7 0.1 3.4 2 2 2 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|313127046|ref|YP_004037316.1| - 4.5e-08 33.8 2.9 0.0058 17.4 0.3 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|313127046|ref|YP_004037316.1| - 0.00047 20.3 2.2 1.3 9.1 0.1 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|313127046|ref|YP_004037316.1| - 0.016 15.2 0.1 0.38 10.7 0.0 2.7 2 1 0 2 2 2 0 Glyoxalase-like domain MatE PF01554.18 gi|313127047|ref|YP_004037317.1| - 8.6e-46 155.5 20.4 3.7e-26 91.7 6.7 2.4 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|313127047|ref|YP_004037317.1| - 3e-07 30.6 4.0 3e-07 30.6 4.0 4.0 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|313127047|ref|YP_004037317.1| - 1.3e-06 27.3 10.4 0.00045 18.9 5.8 2.4 2 1 0 2 2 2 2 Lipid II flippase MurJ OrfB_IS605 PF01385.19 gi|313127049|ref|YP_004037319.1| - 2.1e-31 108.7 0.2 3.5e-31 107.9 0.2 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|313127049|ref|YP_004037319.1| - 2.2e-17 62.7 0.1 4e-17 61.9 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_2 PF13639.6 gi|313127049|ref|YP_004037319.1| - 0.012 16.0 1.3 0.019 15.3 1.3 1.4 1 0 0 1 1 1 0 Ring finger domain AraC_binding_2 PF14525.6 gi|313127050|ref|YP_004037320.1| - 0.061 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AraC-binding-like domain MMR_HSR1_Xtn PF16897.5 gi|313127051|ref|YP_004037321.1| - 1.1e-32 112.2 0.5 2.6e-32 111.0 0.2 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|313127051|ref|YP_004037321.1| - 7.5e-23 80.8 0.0 1.6e-22 79.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|313127051|ref|YP_004037321.1| - 1.5e-13 50.6 0.4 1.5e-12 47.3 0.1 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.21 gi|313127051|ref|YP_004037321.1| - 1.8e-10 40.7 0.0 3.2e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|313127051|ref|YP_004037321.1| - 5.6e-07 29.6 0.5 0.015 15.2 0.1 3.0 3 1 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|313127051|ref|YP_004037321.1| - 0.00012 22.2 0.0 0.11 12.6 0.1 2.6 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.16 gi|313127051|ref|YP_004037321.1| - 0.00038 19.9 0.0 0.00083 18.7 0.0 1.5 1 0 0 1 1 1 1 AIG1 family Arf PF00025.21 gi|313127051|ref|YP_004037321.1| - 0.0054 16.2 0.1 0.36 10.3 0.0 2.5 2 1 0 2 2 2 1 ADP-ribosylation factor family ABC_tran PF00005.27 gi|313127051|ref|YP_004037321.1| - 0.0054 17.2 0.0 0.45 11.0 0.0 2.4 2 0 0 2 2 2 1 ABC transporter MeaB PF03308.16 gi|313127051|ref|YP_004037321.1| - 0.0068 15.4 0.1 0.028 13.4 0.0 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|313127051|ref|YP_004037321.1| - 0.01 15.4 0.6 3.5 7.2 0.0 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|313127051|ref|YP_004037321.1| - 0.014 15.2 0.1 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|313127051|ref|YP_004037321.1| - 0.03 14.6 0.1 0.083 13.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain POTRA PF07244.15 gi|313127051|ref|YP_004037321.1| - 0.034 14.7 0.3 0.16 12.6 0.2 2.3 1 1 1 2 2 2 0 Surface antigen variable number repeat RBD PF02196.15 gi|313127051|ref|YP_004037321.1| - 0.056 13.5 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Raf-like Ras-binding domain AAA_29 PF13555.6 gi|313127051|ref|YP_004037321.1| - 0.082 12.7 0.1 0.24 11.2 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|313127051|ref|YP_004037321.1| - 0.12 12.7 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran_CTD PF16326.5 gi|313127051|ref|YP_004037321.1| - 0.68 10.2 6.3 0.15 12.3 1.7 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain Propep_M14 PF02244.16 gi|313127052|ref|YP_004037322.1| - 0.1 13.0 0.0 2.3 8.7 0.0 2.0 2 0 0 2 2 2 0 Carboxypeptidase activation peptide Cyt_c_ox_IV PF12270.8 gi|313127053|ref|YP_004037323.1| - 3 8.0 6.2 0.37 10.9 0.8 2.0 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV VKOR PF07884.14 gi|313127053|ref|YP_004037323.1| - 6.3 7.0 6.9 27 5.0 6.9 1.8 1 1 0 1 1 1 0 Vitamin K epoxide reductase family DUF2062 PF09835.9 gi|313127054|ref|YP_004037324.1| - 0.012 15.5 0.1 0.014 15.3 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) DUF2079 PF09852.9 gi|313127054|ref|YP_004037324.1| - 0.032 13.1 0.3 0.037 12.9 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) DUF3007 PF11460.8 gi|313127054|ref|YP_004037324.1| - 0.094 13.0 0.2 0.14 12.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) COX1 PF00115.20 gi|313127055|ref|YP_004037325.1| - 4e-149 497.1 58.9 4e-149 497.1 58.9 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I TPPK_C PF12555.8 gi|313127056|ref|YP_004037326.1| - 1.7 8.7 9.1 2.4 8.2 4.4 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Usp PF00582.26 gi|313127057|ref|YP_004037327.1| - 1.5e-17 64.5 0.5 4.3e-17 63.0 0.5 1.6 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|313127057|ref|YP_004037327.1| - 0.026 14.1 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Acetyltransf_1 PF00583.25 gi|313127058|ref|YP_004037328.1| - 4.9e-18 65.5 0.0 9.5e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313127058|ref|YP_004037328.1| - 2.4e-14 53.3 0.0 4e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313127058|ref|YP_004037328.1| - 1.7e-12 47.6 0.1 4.1e-12 46.3 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313127058|ref|YP_004037328.1| - 5.3e-07 30.4 0.4 9.7e-07 29.5 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313127058|ref|YP_004037328.1| - 8.7e-06 25.9 0.0 1.2e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|313127058|ref|YP_004037328.1| - 1.4e-05 25.2 0.9 8e-05 22.7 0.2 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313127058|ref|YP_004037328.1| - 1.7e-05 24.7 0.0 3.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|313127058|ref|YP_004037328.1| - 0.002 18.2 0.0 0.0051 16.9 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|313127058|ref|YP_004037328.1| - 0.014 15.1 0.1 0.056 13.1 0.1 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AMP-binding PF00501.28 gi|313127059|ref|YP_004037329.1| - 2.7e-94 316.2 2.5 3.1e-94 316.0 2.5 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313127059|ref|YP_004037329.1| - 5.2e-21 75.4 0.1 1.6e-20 73.8 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|313127061|ref|YP_004037331.1| - 3.2e-91 306.1 0.0 3.8e-91 305.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313127061|ref|YP_004037331.1| - 2.8e-24 85.9 1.2 5.3e-24 85.0 1.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|313127061|ref|YP_004037331.1| - 6.9e-15 54.7 2.9 2.3e-14 53.1 2.9 1.9 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus MM_CoA_mutase PF01642.22 gi|313127062|ref|YP_004037332.1| - 1.8e-214 713.1 0.3 2e-214 712.9 0.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|313127062|ref|YP_004037332.1| - 0.021 13.3 0.1 0.046 12.2 0.1 1.5 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) NosL PF05573.12 gi|313127063|ref|YP_004037333.1| - 1.9e-40 138.2 0.2 2.4e-40 137.9 0.2 1.1 1 0 0 1 1 1 1 NosL TAT_signal PF10518.9 gi|313127063|ref|YP_004037333.1| - 0.002 17.9 3.9 0.0035 17.1 3.9 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PRY PF13765.6 gi|313127063|ref|YP_004037333.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 SPRY-associated domain Beta_helix PF13229.6 gi|313127064|ref|YP_004037334.1| - 7.6e-30 103.8 21.2 1.4e-14 54.3 4.5 2.3 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|313127064|ref|YP_004037334.1| - 1e-29 103.5 0.2 6.9e-28 97.5 0.1 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) NosL PF05573.12 gi|313127064|ref|YP_004037334.1| - 3.1e-12 47.0 0.0 7e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.7 gi|313127064|ref|YP_004037334.1| - 1.2e-10 41.6 5.5 4.7e-10 39.7 1.3 3.0 1 1 0 2 2 2 1 Pectate lyase superfamily protein ABC_tran PF00005.27 gi|313127065|ref|YP_004037335.1| - 1.3e-25 90.5 0.0 2.3e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313127065|ref|YP_004037335.1| - 6.4e-19 68.9 0.0 6e-11 42.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313127065|ref|YP_004037335.1| - 0.00013 21.5 0.0 0.035 13.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313127065|ref|YP_004037335.1| - 0.00017 21.3 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313127065|ref|YP_004037335.1| - 0.00018 22.1 0.0 0.00026 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313127065|ref|YP_004037335.1| - 0.0029 18.0 0.1 0.0055 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313127065|ref|YP_004037335.1| - 0.0032 17.4 0.1 0.0052 16.7 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|313127065|ref|YP_004037335.1| - 0.0074 16.0 0.0 0.027 14.2 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|313127065|ref|YP_004037335.1| - 0.013 15.6 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|313127065|ref|YP_004037335.1| - 0.018 14.8 0.0 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Dynamin_N PF00350.23 gi|313127065|ref|YP_004037335.1| - 0.022 14.8 0.8 0.04 14.0 0.8 1.3 1 0 0 1 1 1 0 Dynamin family AAA_30 PF13604.6 gi|313127065|ref|YP_004037335.1| - 0.057 13.1 0.1 0.17 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain Rota_Capsid_VP6 PF00980.17 gi|313127065|ref|YP_004037335.1| - 0.17 10.7 0.0 0.25 10.2 0.0 1.1 1 0 0 1 1 1 0 Rotavirus major capsid protein VP6 Mg_chelatase PF01078.21 gi|313127065|ref|YP_004037335.1| - 0.18 11.2 0.2 1.7 8.0 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|313127065|ref|YP_004037335.1| - 0.18 10.6 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|313127065|ref|YP_004037335.1| - 0.18 11.3 0.1 0.69 9.5 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_2 PF12679.7 gi|313127066|ref|YP_004037336.1| - 6.7e-08 32.2 26.2 1.6e-07 30.9 25.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313127066|ref|YP_004037336.1| - 0.007 15.5 12.8 0.0086 15.2 12.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|313127066|ref|YP_004037336.1| - 0.044 13.2 12.9 0.1 12.0 12.9 1.6 1 0 0 1 1 1 0 ABC-2 type transporter FAD_binding_6 PF00970.24 gi|313127067|ref|YP_004037337.1| - 3.4e-11 43.4 0.0 4.5e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.19 gi|313127068|ref|YP_004037338.1| - 2.9e-59 200.6 0.4 4.6e-59 200.0 0.4 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|313127068|ref|YP_004037338.1| - 4.8e-39 134.3 0.1 1e-38 133.1 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|313127068|ref|YP_004037338.1| - 1.7e-05 24.5 0.2 3.2e-05 23.6 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|313127068|ref|YP_004037338.1| - 2e-05 24.8 0.0 5.7e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|313127068|ref|YP_004037338.1| - 0.0093 15.8 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|313127069|ref|YP_004037339.1| - 3.3e-32 111.4 0.7 5e-32 110.8 0.7 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|313127069|ref|YP_004037339.1| - 2.6e-17 62.7 0.9 4.9e-17 61.8 0.3 1.8 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Elf1 PF05129.13 gi|313127070|ref|YP_004037340.1| - 0.033 14.2 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|313127070|ref|YP_004037340.1| - 0.04 14.0 2.0 0.18 11.9 2.0 1.9 1 1 2 3 3 3 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|313127070|ref|YP_004037340.1| - 0.047 13.5 0.5 6.8 6.6 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.6 gi|313127070|ref|YP_004037340.1| - 0.08 12.7 0.4 1.4 8.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|313127070|ref|YP_004037340.1| - 0.15 12.0 1.6 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Trp_halogenase PF04820.14 gi|313127071|ref|YP_004037341.1| - 1.3e-12 47.4 1.1 3.3e-08 32.8 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|313127071|ref|YP_004037341.1| - 2.3e-10 40.4 5.7 5.1e-10 39.3 5.7 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313127071|ref|YP_004037341.1| - 1.7e-09 37.3 7.0 1.4e-05 24.4 3.1 2.6 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|313127071|ref|YP_004037341.1| - 6.5e-09 35.8 1.2 0.0036 16.9 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|313127071|ref|YP_004037341.1| - 4e-08 32.9 2.9 1.6e-07 30.9 2.9 1.9 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|313127071|ref|YP_004037341.1| - 4.4e-07 29.3 0.0 5.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|313127071|ref|YP_004037341.1| - 3.5e-06 26.0 1.0 3e-05 22.9 0.6 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|313127071|ref|YP_004037341.1| - 1.1e-05 25.9 2.0 0.18 12.4 0.5 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|313127071|ref|YP_004037341.1| - 3.1e-05 23.4 4.2 0.00021 20.6 0.2 2.3 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|313127071|ref|YP_004037341.1| - 4.6e-05 23.6 1.1 0.0003 20.9 0.3 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|313127071|ref|YP_004037341.1| - 0.00031 20.1 2.1 0.0031 16.9 0.1 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|313127071|ref|YP_004037341.1| - 0.00095 18.3 2.0 0.16 11.0 0.5 2.5 3 0 0 3 3 3 2 Lycopene cyclase protein Thi4 PF01946.17 gi|313127071|ref|YP_004037341.1| - 0.02 14.1 0.3 0.02 14.1 0.3 1.8 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|313127071|ref|YP_004037341.1| - 0.026 14.4 0.7 0.061 13.2 0.6 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GMC_oxred_N PF00732.19 gi|313127071|ref|YP_004037341.1| - 0.1 11.9 0.0 6.3 6.1 0.0 2.3 2 0 0 2 2 2 0 GMC oxidoreductase Aldo_ket_red PF00248.21 gi|313127072|ref|YP_004037342.1| - 1.8e-63 214.5 0.0 2.3e-61 207.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF308 PF03729.13 gi|313127073|ref|YP_004037343.1| - 0.0021 18.3 1.5 0.0026 18.1 1.5 1.2 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF373 PF04123.13 gi|313127074|ref|YP_004037344.1| - 1.7e-115 386.1 4.2 1.9e-115 385.9 4.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Peptidase_S49 PF01343.18 gi|313127075|ref|YP_004037345.1| - 1.8e-43 148.2 0.0 2.7e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|313127075|ref|YP_004037345.1| - 9.2e-05 21.6 0.0 0.00014 21.0 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Laminin_II PF06009.12 gi|313127076|ref|YP_004037346.1| - 1.3 9.0 32.9 0.047 13.7 9.7 3.5 1 1 4 5 5 5 0 Laminin Domain II DUF948 PF06103.11 gi|313127076|ref|YP_004037346.1| - 1.5 9.1 20.9 0.21 11.9 1.1 3.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1771 PF08590.10 gi|313127076|ref|YP_004037346.1| - 4.4 7.8 36.6 1.5 9.2 5.0 5.6 3 2 2 5 5 5 0 Domain of unknown function (DUF1771) ocr PF08684.10 gi|313127076|ref|YP_004037346.1| - 9.2 6.8 9.2 8.3 6.9 2.2 3.0 2 2 0 2 2 2 0 DNA mimic ocr DUF371 PF04027.13 gi|313127077|ref|YP_004037347.1| - 1.9e-52 176.8 0.1 2.1e-52 176.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) HhH-GPD PF00730.25 gi|313127078|ref|YP_004037348.1| - 7e-16 58.6 0.0 1.1e-15 58.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|313127078|ref|YP_004037348.1| - 7e-07 29.4 6.6 1.4e-06 28.4 6.6 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|313127078|ref|YP_004037348.1| - 0.00036 20.3 0.0 0.00099 18.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|313127078|ref|YP_004037348.1| - 0.0083 16.7 0.1 0.065 13.8 0.0 2.5 1 1 1 2 2 2 1 Helix-hairpin-helix domain PRiA4_ORF3 PF07929.11 gi|313127078|ref|YP_004037348.1| - 0.035 13.8 0.3 4.6 6.9 0.1 2.4 2 0 0 2 2 2 0 Plasmid pRiA4b ORF-3-like protein DUF2400 PF09674.10 gi|313127078|ref|YP_004037348.1| - 0.082 12.9 0.1 0.19 11.7 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) DUF732 PF05305.14 gi|313127078|ref|YP_004037348.1| - 0.15 12.5 2.8 0.78 10.2 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF732) PAS_3 PF08447.12 gi|313127079|ref|YP_004037349.1| - 1.3e-45 153.6 0.0 3.5e-18 65.7 0.1 4.7 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|313127079|ref|YP_004037349.1| - 2.4e-35 120.9 1.0 2.9e-15 56.2 0.0 4.9 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|313127079|ref|YP_004037349.1| - 2.7e-30 104.8 6.9 3e-10 40.3 0.1 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|313127079|ref|YP_004037349.1| - 2.1e-25 89.0 0.3 5e-12 46.0 0.0 4.5 5 0 0 5 5 5 3 PAS domain PAS_8 PF13188.7 gi|313127079|ref|YP_004037349.1| - 1e-15 57.3 0.1 6.4e-07 29.3 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|313127079|ref|YP_004037349.1| - 5.5e-13 49.4 0.1 2.1e-12 47.5 0.1 2.1 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|313127079|ref|YP_004037349.1| - 2.8e-11 43.4 0.4 8.6e-11 41.9 0.4 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|313127079|ref|YP_004037349.1| - 0.00013 21.8 0.0 0.00033 20.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PSK_trans_fac PF07704.11 gi|313127079|ref|YP_004037349.1| - 0.2 12.5 3.0 1.3 9.8 0.0 3.6 3 0 0 3 3 3 0 Rv0623-like transcription factor CopD PF05425.13 gi|313127080|ref|YP_004037350.1| - 0.018 15.5 0.1 0.037 14.4 0.1 1.5 1 0 0 1 1 1 0 Copper resistance protein D MGS PF02142.22 gi|313127081|ref|YP_004037351.1| - 5.2e-14 52.2 0.0 6.2e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain SepSecS PF05889.13 gi|313127081|ref|YP_004037351.1| - 0.22 10.1 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS KH_7 PF17214.3 gi|313127082|ref|YP_004037352.1| - 2.7e-32 110.5 1.0 3.1e-30 103.9 0.3 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|313127082|ref|YP_004037352.1| - 9.5e-22 77.4 0.0 1.8e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|313127082|ref|YP_004037352.1| - 4e-16 58.7 0.0 1.3e-15 57.0 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|313127082|ref|YP_004037352.1| - 2e-12 47.0 0.0 3.3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313127082|ref|YP_004037352.1| - 4.6e-12 46.4 2.4 2.4e-11 44.0 2.4 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313127082|ref|YP_004037352.1| - 8.2e-09 35.3 0.1 1.4e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|313127082|ref|YP_004037352.1| - 1.6e-08 34.3 0.2 7e-07 29.0 0.0 2.6 2 1 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|313127082|ref|YP_004037352.1| - 0.0008 19.3 0.4 0.0016 18.4 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|313127082|ref|YP_004037352.1| - 0.017 14.9 0.0 0.095 12.5 0.0 2.2 2 0 0 2 2 2 0 KH domain KH_4 PF13083.6 gi|313127082|ref|YP_004037352.1| - 0.037 13.9 0.0 0.085 12.7 0.0 1.6 1 0 0 1 1 1 0 KH domain DUF1155 PF06633.11 gi|313127083|ref|YP_004037353.1| - 0.0044 16.5 0.1 0.0078 15.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1155) PgpA PF04608.13 gi|313127083|ref|YP_004037353.1| - 0.23 11.5 1.2 0.57 10.2 1.2 1.8 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A RHH_5 PF07878.11 gi|313127084|ref|YP_004037354.1| - 0.21 11.5 2.1 1.2 9.0 0.1 2.5 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HGTP_anticodon PF03129.20 gi|313127085|ref|YP_004037355.1| - 1.4e-23 82.8 0.5 1.4e-23 82.8 0.5 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|313127085|ref|YP_004037355.1| - 9.9e-21 74.5 0.0 2.1e-20 73.5 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|313127085|ref|YP_004037355.1| - 5e-20 71.5 0.1 1.3e-19 70.1 0.1 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|313127085|ref|YP_004037355.1| - 0.046 14.3 0.3 7.7 7.2 0.0 2.7 2 0 0 2 2 2 0 TIR domain PHF5 PF03660.14 gi|313127085|ref|YP_004037355.1| - 0.15 12.3 0.1 0.23 11.7 0.1 1.3 1 0 0 1 1 1 0 PHF5-like protein GATase_2 PF00310.21 gi|313127086|ref|YP_004037356.1| - 4.3e-157 523.1 0.0 5.9e-157 522.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|313127086|ref|YP_004037356.1| - 1.8e-150 501.2 0.1 2.6e-149 497.4 0.0 2.2 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|313127086|ref|YP_004037356.1| - 3.2e-116 387.7 0.0 1e-115 386.0 0.0 1.8 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|313127086|ref|YP_004037356.1| - 9.6e-80 266.7 10.0 1.7e-79 265.8 10.0 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|313127086|ref|YP_004037356.1| - 3.1e-05 23.5 1.1 7.2e-05 22.3 1.1 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|313127086|ref|YP_004037356.1| - 0.00098 18.2 12.5 0.0045 16.1 2.0 3.4 3 1 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|313127086|ref|YP_004037356.1| - 0.048 12.7 3.0 0.093 11.7 1.2 2.3 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain Epimerase PF01370.21 gi|313127087|ref|YP_004037357.1| - 5.1e-28 98.1 0.3 3.6e-15 56.1 0.0 2.1 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313127087|ref|YP_004037357.1| - 8.3e-09 35.3 0.1 0.00047 19.7 0.1 2.1 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|313127087|ref|YP_004037357.1| - 2.2e-06 26.9 0.1 0.0008 18.5 0.1 2.2 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|313127087|ref|YP_004037357.1| - 6.6e-06 26.1 0.1 1.6e-05 24.9 0.1 1.6 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|313127087|ref|YP_004037357.1| - 0.0033 16.6 0.1 0.36 9.9 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|313127087|ref|YP_004037357.1| - 0.012 14.8 0.0 1.2 8.2 0.0 2.2 2 0 0 2 2 2 0 Male sterility protein adh_short PF00106.25 gi|313127087|ref|YP_004037357.1| - 0.027 13.9 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase HD PF01966.22 gi|313127088|ref|YP_004037358.1| - 1.1e-16 61.1 0.5 2.3e-16 60.1 0.5 1.5 1 0 0 1 1 1 1 HD domain DUF3179 PF11376.8 gi|313127089|ref|YP_004037359.1| - 2.6e-82 276.4 0.0 3.2e-82 276.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Fe_dep_repress PF01325.19 gi|313127090|ref|YP_004037360.1| - 3.2e-17 62.5 0.2 8e-17 61.2 0.1 1.7 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|313127090|ref|YP_004037360.1| - 9.3e-11 41.7 0.1 4.7e-10 39.4 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|313127090|ref|YP_004037360.1| - 3.9e-05 23.5 0.0 8.8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|313127090|ref|YP_004037360.1| - 6.1e-05 22.9 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|313127090|ref|YP_004037360.1| - 0.00016 21.2 0.0 0.0015 18.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|313127090|ref|YP_004037360.1| - 0.00025 20.9 0.0 0.0012 18.7 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|313127090|ref|YP_004037360.1| - 0.00028 21.3 0.0 0.00046 20.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|313127090|ref|YP_004037360.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|313127090|ref|YP_004037360.1| - 0.01 15.6 0.0 0.016 14.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|313127090|ref|YP_004037360.1| - 0.047 13.8 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|313127090|ref|YP_004037360.1| - 0.081 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313127090|ref|YP_004037360.1| - 0.084 12.5 0.0 0.26 11.0 0.0 1.8 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|313127090|ref|YP_004037360.1| - 0.13 12.7 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4226 PF10774.9 gi|313127091|ref|YP_004037361.1| - 0.0004 20.6 2.5 0.014 15.6 0.7 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4226) Rubrerythrin PF02915.17 gi|313127091|ref|YP_004037361.1| - 0.00041 20.8 7.8 0.00057 20.3 6.8 1.7 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|313127091|ref|YP_004037361.1| - 0.007 16.6 3.5 0.51 10.5 1.2 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF445 PF04286.12 gi|313127091|ref|YP_004037361.1| - 0.017 14.9 0.4 0.022 14.6 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) FapA PF03961.13 gi|313127091|ref|YP_004037361.1| - 0.032 12.8 0.4 3.6 6.1 0.0 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A AAA_lid_11 PF18198.1 gi|313127091|ref|YP_004037361.1| - 0.042 13.7 0.0 0.059 13.2 0.0 1.3 1 1 0 1 1 1 0 Dynein heavy chain AAA lid domain PspB PF06667.12 gi|313127091|ref|YP_004037361.1| - 0.048 13.7 1.7 0.097 12.7 1.7 1.6 1 0 0 1 1 1 0 Phage shock protein B DUF892 PF05974.12 gi|313127091|ref|YP_004037361.1| - 0.12 12.4 5.9 1 9.3 5.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF892) PP2C_C PF07830.13 gi|313127091|ref|YP_004037361.1| - 0.23 12.0 1.5 0.64 10.5 1.5 1.7 1 0 0 1 1 1 0 Protein serine/threonine phosphatase 2C, C-terminal domain Nup54 PF13874.6 gi|313127091|ref|YP_004037361.1| - 0.26 11.4 4.1 0.63 10.1 2.3 2.3 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 T2SSF PF00482.23 gi|313127091|ref|YP_004037361.1| - 0.36 10.8 4.3 9.8 6.2 1.2 2.7 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein F UPF0051 PF01458.17 gi|313127092|ref|YP_004037362.1| - 3.6e-62 209.9 0.6 4.4e-62 209.6 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|313127093|ref|YP_004037363.1| - 8.4e-73 244.7 0.7 1.1e-72 244.3 0.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|313127094|ref|YP_004037364.1| - 2.5e-15 57.2 0.0 9.8e-15 55.3 0.0 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|313127094|ref|YP_004037364.1| - 4.4e-06 26.3 0.8 0.02 14.4 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|313127094|ref|YP_004037364.1| - 0.00019 21.3 0.2 0.079 12.8 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|313127094|ref|YP_004037364.1| - 0.00024 21.5 0.1 0.21 12.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|313127094|ref|YP_004037364.1| - 0.0018 18.3 0.2 1.6 8.7 0.0 2.7 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|313127094|ref|YP_004037364.1| - 0.0037 17.0 0.1 0.0067 16.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|313127094|ref|YP_004037364.1| - 0.033 14.4 0.0 0.52 10.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|313127094|ref|YP_004037364.1| - 0.043 14.4 0.0 0.16 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|313127094|ref|YP_004037364.1| - 0.059 13.7 0.1 0.94 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|313127094|ref|YP_004037364.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|313127094|ref|YP_004037364.1| - 0.069 13.6 4.4 0.29 11.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|313127094|ref|YP_004037364.1| - 0.085 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313127094|ref|YP_004037364.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|313127094|ref|YP_004037364.1| - 0.18 11.5 1.3 0.56 9.8 1.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain DNA_pol_B PF00136.21 gi|313127095|ref|YP_004037365.1| - 9.7e-47 159.7 0.0 3.1e-46 158.0 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|313127095|ref|YP_004037365.1| - 4e-31 108.4 0.0 2.4e-30 105.8 0.0 2.1 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain ELK PF03789.13 gi|313127095|ref|YP_004037365.1| - 0.0036 17.3 0.1 0.17 12.0 0.0 2.4 2 0 0 2 2 2 1 ELK domain DNA_pol_B_2 PF03175.13 gi|313127095|ref|YP_004037365.1| - 0.007 15.3 0.0 0.31 9.9 0.0 2.2 2 0 0 2 2 2 2 DNA polymerase type B, organellar and viral MarR_2 PF12802.7 gi|313127098|ref|YP_004037368.1| - 0.079 12.9 1.2 0.12 12.3 0.3 1.8 2 1 0 2 2 2 0 MarR family AAA_23 PF13476.6 gi|313127099|ref|YP_004037369.1| - 1.4e-24 87.7 0.0 1.4e-24 87.7 0.0 5.9 1 1 2 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|313127099|ref|YP_004037369.1| - 2.7e-15 57.0 0.0 1.3e-11 44.9 0.0 3.0 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|313127099|ref|YP_004037369.1| - 4.2e-11 42.7 48.2 6.1e-10 38.9 48.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Atg14 PF10186.9 gi|313127099|ref|YP_004037369.1| - 4.4e-09 35.9 68.7 0.0042 16.2 12.0 5.3 1 1 4 5 5 5 4 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|313127099|ref|YP_004037369.1| - 3.3e-07 28.3 98.5 0.00064 17.4 42.3 4.0 2 1 2 4 4 4 3 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|313127099|ref|YP_004037369.1| - 1.9e-06 26.9 52.7 0.00011 21.1 3.5 4.6 2 1 3 5 5 5 2 AAA domain AAA_21 PF13304.6 gi|313127099|ref|YP_004037369.1| - 3.2e-06 27.2 18.4 0.00049 20.0 6.8 3.6 3 2 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313127099|ref|YP_004037369.1| - 7.6e-06 25.6 0.0 1.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|313127099|ref|YP_004037369.1| - 0.00049 19.1 100.1 0.085 11.7 16.3 5.7 2 2 3 5 5 5 4 Spc7 kinetochore protein NPV_P10 PF05531.12 gi|313127099|ref|YP_004037369.1| - 0.00064 20.1 22.6 0.33 11.5 0.1 8.5 4 2 2 6 6 6 1 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.11 gi|313127099|ref|YP_004037369.1| - 0.0053 17.3 11.5 0.0053 17.3 11.5 7.6 1 1 6 7 7 4 1 Syntaxin 6, N-terminal Fib_alpha PF08702.10 gi|313127099|ref|YP_004037369.1| - 0.023 14.9 41.2 1.9 8.7 4.6 5.8 3 1 3 6 6 6 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|313127099|ref|YP_004037369.1| - 0.035 14.1 109.1 0.43 10.6 11.3 7.3 2 2 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Snapin_Pallidin PF14712.6 gi|313127099|ref|YP_004037369.1| - 0.078 13.4 39.4 1.5 9.3 0.7 7.9 4 2 0 6 6 6 0 Snapin/Pallidin DUF1664 PF07889.12 gi|313127099|ref|YP_004037369.1| - 0.079 13.0 45.5 0.42 10.7 0.7 7.7 2 2 7 9 9 9 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|313127099|ref|YP_004037369.1| - 0.12 12.5 109.6 0.16 12.0 17.1 7.8 2 2 5 7 7 7 0 TPR/MLP1/MLP2-like protein DNA_ligase_ZBD PF03119.16 gi|313127099|ref|YP_004037369.1| - 0.21 11.6 0.4 0.81 9.8 0.4 2.1 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Baculo_PEP_C PF04513.12 gi|313127099|ref|YP_004037369.1| - 0.23 11.5 21.5 5.1 7.1 0.1 6.4 2 2 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4201 PF13870.6 gi|313127099|ref|YP_004037369.1| - 0.23 11.2 76.3 1.2 8.9 7.8 7.7 1 1 5 7 7 7 0 Domain of unknown function (DUF4201) ABC_tran PF00005.27 gi|313127099|ref|YP_004037369.1| - 0.33 11.5 0.0 0.33 11.5 0.0 5.4 2 1 0 2 2 1 0 ABC transporter Mod_r PF07200.13 gi|313127099|ref|YP_004037369.1| - 0.53 10.4 75.5 0.21 11.7 5.5 6.7 2 2 3 6 6 6 0 Modifier of rudimentary (Mod(r)) protein MukB PF04310.12 gi|313127099|ref|YP_004037369.1| - 0.99 9.2 7.3 1.2 8.9 0.0 3.8 3 1 0 4 4 4 0 MukB N-terminal AAA_33 PF13671.6 gi|313127099|ref|YP_004037369.1| - 1.2 9.2 0.0 1.2 9.2 0.0 4.9 5 1 0 5 5 5 0 AAA domain Filament PF00038.21 gi|313127099|ref|YP_004037369.1| - 1.5 8.4 98.5 2.9 7.4 43.1 6.5 2 2 1 3 3 3 0 Intermediate filament protein ATG16 PF08614.11 gi|313127099|ref|YP_004037369.1| - 1.7 8.8 112.3 1.9 8.7 10.7 6.3 1 1 4 5 5 4 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.12 gi|313127099|ref|YP_004037369.1| - 2.9 7.9 52.6 0.11 12.6 5.9 6.5 2 1 5 7 7 7 0 Laminin Domain II FapA PF03961.13 gi|313127099|ref|YP_004037369.1| - 4.2 5.9 57.0 0.6 8.7 6.1 5.5 1 1 5 6 6 6 0 Flagellar Assembly Protein A IFT57 PF10498.9 gi|313127099|ref|YP_004037369.1| - 4.2 6.2 63.2 1.1 8.2 8.2 5.8 2 2 4 6 6 6 0 Intra-flagellar transport protein 57 DUF4407 PF14362.6 gi|313127099|ref|YP_004037369.1| - 4.7 6.5 88.0 2.8 7.2 4.2 5.2 1 1 4 5 5 5 0 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|313127099|ref|YP_004037369.1| - 6.8 7.1 94.1 3.3 8.1 18.1 5.2 1 1 4 5 5 5 0 Fez1 GAS PF13851.6 gi|313127099|ref|YP_004037369.1| - 7.2 5.9 82.4 0.51 9.7 11.8 5.6 1 1 3 5 5 4 0 Growth-arrest specific micro-tubule binding Metallophos_2 PF12850.7 gi|313127100|ref|YP_004037370.1| - 6.6e-11 42.7 1.9 9.1e-11 42.2 0.6 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313127100|ref|YP_004037370.1| - 2.4e-10 41.2 1.5 3.6e-10 40.7 1.5 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_24 PF13412.6 gi|313127102|ref|YP_004037372.1| - 2.5e-06 26.9 0.0 3.9e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313127102|ref|YP_004037372.1| - 9.2e-05 22.3 0.1 0.00012 21.9 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313127102|ref|YP_004037372.1| - 0.00035 20.6 0.0 0.00047 20.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|313127102|ref|YP_004037372.1| - 0.001 18.7 0.1 0.0014 18.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|313127102|ref|YP_004037372.1| - 0.0041 17.0 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313127102|ref|YP_004037372.1| - 0.024 14.5 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|313127102|ref|YP_004037372.1| - 0.025 14.2 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|313127102|ref|YP_004037372.1| - 0.034 14.5 0.0 0.044 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|313127102|ref|YP_004037372.1| - 0.035 14.0 0.0 0.041 13.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|313127102|ref|YP_004037372.1| - 0.039 14.1 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313127102|ref|YP_004037372.1| - 0.083 12.7 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|313127102|ref|YP_004037372.1| - 0.089 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|313127102|ref|YP_004037372.1| - 0.14 12.1 0.1 0.18 11.7 0.1 1.2 1 0 0 1 1 1 0 HTH domain AAA PF00004.29 gi|313127103|ref|YP_004037373.1| - 5.8e-46 156.2 1.4 1.1e-45 155.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313127103|ref|YP_004037373.1| - 3.1e-12 46.1 0.5 1.1e-11 44.3 0.5 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|313127103|ref|YP_004037373.1| - 2.9e-09 37.3 0.0 1.1e-08 35.4 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|313127103|ref|YP_004037373.1| - 1.5e-07 31.5 0.2 1.4e-06 28.4 0.2 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|313127103|ref|YP_004037373.1| - 6.6e-07 29.2 0.0 1.6e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|313127103|ref|YP_004037373.1| - 7e-06 26.5 4.4 0.00024 21.6 0.0 3.4 2 2 1 3 3 3 1 AAA ATPase domain Prot_ATP_ID_OB PF16450.5 gi|313127103|ref|YP_004037373.1| - 1.6e-05 24.7 0.2 3.5e-05 23.7 0.2 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_22 PF13401.6 gi|313127103|ref|YP_004037373.1| - 3.1e-05 24.3 3.1 0.00058 20.1 0.0 2.8 2 2 1 3 3 2 1 AAA domain DUF815 PF05673.13 gi|313127103|ref|YP_004037373.1| - 9.2e-05 21.7 0.0 0.00021 20.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|313127103|ref|YP_004037373.1| - 0.00017 21.6 0.2 0.002 18.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|313127103|ref|YP_004037373.1| - 0.00019 21.9 5.2 0.044 14.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|313127103|ref|YP_004037373.1| - 0.00022 21.8 1.3 0.0032 18.0 0.0 2.7 2 2 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|313127103|ref|YP_004037373.1| - 0.00064 19.2 0.2 0.0036 16.7 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI GrpE PF01025.19 gi|313127103|ref|YP_004037373.1| - 0.00087 19.0 7.1 0.00087 19.0 7.1 1.7 2 0 0 2 2 1 1 GrpE Sigma54_activat PF00158.26 gi|313127103|ref|YP_004037373.1| - 0.0013 18.5 0.1 0.025 14.3 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain TIP49 PF06068.13 gi|313127103|ref|YP_004037373.1| - 0.0026 17.0 2.6 0.0045 16.2 0.1 2.4 2 2 0 2 2 2 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|313127103|ref|YP_004037373.1| - 0.003 17.3 4.2 0.0046 16.7 0.1 2.8 3 1 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|313127103|ref|YP_004037373.1| - 0.0035 17.1 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|313127103|ref|YP_004037373.1| - 0.0041 17.5 0.0 0.011 16.1 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.6 gi|313127103|ref|YP_004037373.1| - 0.0056 16.9 0.8 0.014 15.7 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_3 PF07726.11 gi|313127103|ref|YP_004037373.1| - 0.0059 16.5 0.7 0.072 12.9 0.0 2.9 4 0 0 4 4 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|313127103|ref|YP_004037373.1| - 0.0079 16.1 0.1 0.09 12.7 0.0 2.4 1 1 1 2 2 2 1 NACHT domain Cep57_CLD_2 PF14197.6 gi|313127103|ref|YP_004037373.1| - 0.009 16.1 10.9 0.031 14.4 10.9 1.9 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 AAA_33 PF13671.6 gi|313127103|ref|YP_004037373.1| - 0.011 15.9 0.0 0.029 14.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|313127103|ref|YP_004037373.1| - 0.017 14.6 1.6 0.033 13.7 0.1 2.2 2 1 0 2 2 2 0 P-loop containing dynein motor region Atg14 PF10186.9 gi|313127103|ref|YP_004037373.1| - 0.019 14.1 2.8 0.027 13.6 2.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fungal_TACC PF12709.7 gi|313127103|ref|YP_004037373.1| - 0.02 15.4 4.3 0.066 13.7 4.3 1.9 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins TsaE PF02367.17 gi|313127103|ref|YP_004037373.1| - 0.022 14.8 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TniB PF05621.11 gi|313127103|ref|YP_004037373.1| - 0.03 13.7 0.0 1 8.7 0.0 2.6 1 1 0 2 2 2 0 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|313127103|ref|YP_004037373.1| - 0.03 13.4 0.0 0.059 12.4 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|313127103|ref|YP_004037373.1| - 0.031 14.2 3.1 0.88 9.5 0.1 3.2 2 2 2 4 4 4 0 NTPase ATPase PF06745.13 gi|313127103|ref|YP_004037373.1| - 0.032 13.6 7.1 0.18 11.1 0.0 3.3 2 1 0 3 3 3 0 KaiC ATPase_2 PF01637.18 gi|313127103|ref|YP_004037373.1| - 0.034 14.0 2.5 0.72 9.7 0.0 2.9 2 1 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|313127103|ref|YP_004037373.1| - 0.039 12.6 6.7 4.7 5.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|313127103|ref|YP_004037373.1| - 0.044 13.9 0.2 0.18 12.0 0.0 2.1 2 0 0 2 2 1 0 Sigma-54 interaction domain DUF2334 PF10096.9 gi|313127103|ref|YP_004037373.1| - 0.051 13.2 0.1 0.087 12.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) AAA_30 PF13604.6 gi|313127103|ref|YP_004037373.1| - 0.054 13.2 0.2 0.19 11.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain Occludin_ELL PF07303.13 gi|313127103|ref|YP_004037373.1| - 0.057 14.2 1.8 1.1 10.1 2.1 2.5 2 0 0 2 2 2 0 Occludin homology domain DUF4407 PF14362.6 gi|313127103|ref|YP_004037373.1| - 0.069 12.5 6.0 0.14 11.5 6.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fmp27_WPPW PF10359.9 gi|313127103|ref|YP_004037373.1| - 0.075 11.9 6.6 0.12 11.2 6.6 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Creatininase PF02633.14 gi|313127103|ref|YP_004037373.1| - 0.078 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase bZIP_1 PF00170.21 gi|313127103|ref|YP_004037373.1| - 0.098 12.8 12.0 0.28 11.3 1.5 2.8 1 1 1 2 2 2 0 bZIP transcription factor DUF724 PF05266.14 gi|313127103|ref|YP_004037373.1| - 0.11 12.3 2.9 0.32 10.8 2.9 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF724) SHE3 PF17078.5 gi|313127103|ref|YP_004037373.1| - 0.11 12.2 9.7 0.2 11.4 9.7 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 AAA_25 PF13481.6 gi|313127103|ref|YP_004037373.1| - 0.12 11.9 10.9 0.21 11.2 0.1 3.9 3 2 0 4 4 4 0 AAA domain ADIP PF11559.8 gi|313127103|ref|YP_004037373.1| - 0.13 12.4 8.0 0.33 11.0 8.0 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding YabA PF06156.13 gi|313127103|ref|YP_004037373.1| - 0.16 12.6 6.5 61 4.3 7.8 2.8 2 1 0 2 2 2 0 Initiation control protein YabA AAA_11 PF13086.6 gi|313127103|ref|YP_004037373.1| - 0.16 11.7 0.1 0.16 11.7 0.1 2.3 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|313127103|ref|YP_004037373.1| - 0.35 11.4 0.0 0.35 11.4 0.0 2.6 2 1 0 2 2 1 0 ABC transporter DUF4201 PF13870.6 gi|313127103|ref|YP_004037373.1| - 0.55 9.9 11.0 0.79 9.4 10.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) KAP_NTPase PF07693.14 gi|313127103|ref|YP_004037373.1| - 0.6 9.3 3.7 10 5.2 0.0 2.8 2 1 0 3 3 3 0 KAP family P-loop domain FlaC_arch PF05377.11 gi|313127103|ref|YP_004037373.1| - 1.3 9.5 5.6 29 5.1 0.0 3.4 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF3987 PF13148.6 gi|313127103|ref|YP_004037373.1| - 2.2 7.2 6.4 2.8 6.8 4.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) GAS PF13851.6 gi|313127103|ref|YP_004037373.1| - 5.7 6.2 16.2 3.2 7.0 14.1 1.7 2 1 0 2 2 1 0 Growth-arrest specific micro-tubule binding APG6_N PF17675.1 gi|313127103|ref|YP_004037373.1| - 6.2 7.3 15.4 0.32 11.5 9.4 1.9 2 1 0 2 2 1 0 Apg6 coiled-coil region HhH-GPD PF00730.25 gi|313127105|ref|YP_004037375.1| - 1.3e-22 80.3 0.0 1.9e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|313127105|ref|YP_004037375.1| - 9.2e-10 37.9 0.0 1.2e-08 34.4 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|313127105|ref|YP_004037375.1| - 3e-05 24.5 0.0 0.036 14.7 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|313127105|ref|YP_004037375.1| - 4.9e-05 23.5 4.8 7.9e-05 22.9 4.8 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III PqqD PF05402.12 gi|313127105|ref|YP_004037375.1| - 0.001 19.3 1.8 0.043 14.1 0.5 2.6 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) DUF5337 PF17272.2 gi|313127106|ref|YP_004037376.1| - 0.032 14.1 1.0 0.032 14.1 1.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5337) Cytochrom_B561 PF03188.16 gi|313127106|ref|YP_004037376.1| - 0.68 10.1 5.0 0.14 12.3 0.7 2.0 1 1 1 2 2 2 0 Eukaryotic cytochrome b561 Copper-bind PF00127.20 gi|313127108|ref|YP_004037378.1| - 2.9e-14 53.3 0.1 5.3e-14 52.5 0.1 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313127108|ref|YP_004037378.1| - 0.18 11.9 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Cupredoxin-like domain Keratin_2_head PF16208.5 gi|313127108|ref|YP_004037378.1| - 6.2 6.9 24.2 1.1 9.4 19.1 1.9 2 0 0 2 2 2 0 Keratin type II head VMA21 PF09446.10 gi|313127109|ref|YP_004037379.1| - 0.13 12.3 7.5 0.081 13.0 2.1 2.1 1 1 1 2 2 2 0 VMA21-like domain Cytochrome_B PF00033.19 gi|313127110|ref|YP_004037380.1| - 5e-45 153.6 17.8 7.4e-45 153.1 17.8 1.2 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|313127110|ref|YP_004037380.1| - 6.3e-43 146.7 11.5 2.9e-42 144.5 10.9 1.9 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|313127110|ref|YP_004037380.1| - 3.4e-05 24.3 3.1 3.4e-05 24.3 3.1 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) DUF373 PF04123.13 gi|313127110|ref|YP_004037380.1| - 0.17 11.3 6.2 0.28 10.6 6.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Ni_hydr_CYTB PF01292.20 gi|313127110|ref|YP_004037380.1| - 0.19 11.3 21.8 0.034 13.8 6.6 2.3 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 Cytochrom_B_C PF00032.17 gi|313127111|ref|YP_004037381.1| - 4.4e-09 36.5 0.7 7.5e-09 35.8 0.2 1.7 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD VP4_helical PF17478.2 gi|313127111|ref|YP_004037381.1| - 0.16 11.4 0.0 0.22 10.9 0.0 1.1 1 0 0 1 1 1 0 Rotavirus VP4 helical domain DUF202 PF02656.15 gi|313127112|ref|YP_004037382.1| - 4.5 7.8 7.7 14 6.2 7.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) NAD_kinase PF01513.21 gi|313127115|ref|YP_004037385.1| - 1e-11 44.6 0.2 1.3e-11 44.3 0.2 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Peptidase_M28 PF04389.17 gi|313127116|ref|YP_004037386.1| - 2.2e-30 105.9 0.1 4.3e-30 104.9 0.1 1.5 2 0 0 2 2 2 1 Peptidase family M28 PA PF02225.22 gi|313127116|ref|YP_004037386.1| - 1.2e-13 50.9 0.0 2.3e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|313127116|ref|YP_004037386.1| - 3.4e-05 23.6 1.2 0.00068 19.4 0.5 2.4 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|313127116|ref|YP_004037386.1| - 0.0026 16.8 0.1 0.0047 16.0 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase DUF4910 PF16254.5 gi|313127116|ref|YP_004037386.1| - 0.19 10.6 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4910) Thiolase_N PF00108.23 gi|313127117|ref|YP_004037387.1| - 2.8e-25 89.2 2.4 3.4e-24 85.6 1.1 2.4 2 1 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|313127117|ref|YP_004037387.1| - 4.7e-10 39.5 6.0 2.2e-08 34.0 3.9 3.2 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|313127117|ref|YP_004037387.1| - 6.8e-09 35.4 0.1 1.4e-08 34.4 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|313127117|ref|YP_004037387.1| - 0.0065 16.5 1.4 0.09 12.8 1.4 2.5 1 1 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|313127118|ref|YP_004037388.1| - 5.4e-09 35.9 0.5 7.4e-09 35.5 0.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|313127118|ref|YP_004037388.1| - 3.1e-05 23.8 0.9 4.6e-05 23.2 0.9 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|313127118|ref|YP_004037388.1| - 0.12 12.5 1.6 0.16 12.1 0.5 1.8 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313127118|ref|YP_004037388.1| - 0.12 12.3 0.3 0.21 11.6 0.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Abhydrolase_6 PF12697.7 gi|313127119|ref|YP_004037389.1| - 2e-19 71.1 1.7 2e-19 71.1 1.7 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|313127119|ref|YP_004037389.1| - 7e-11 42.3 0.0 1.3e-06 28.3 0.0 2.2 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|313127119|ref|YP_004037389.1| - 1.8e-06 27.4 0.0 2.9e-05 23.5 0.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 MeaB PF03308.16 gi|313127120|ref|YP_004037390.1| - 2.3e-91 305.5 3.4 2.8e-91 305.2 3.4 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|313127120|ref|YP_004037390.1| - 5.1e-06 26.2 2.0 4.3e-05 23.2 2.0 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|313127120|ref|YP_004037390.1| - 4.3e-05 24.0 0.4 0.00032 21.1 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|313127120|ref|YP_004037390.1| - 7e-05 22.8 0.6 0.00017 21.5 0.1 1.9 3 0 0 3 3 1 1 NTPase AAA_30 PF13604.6 gi|313127120|ref|YP_004037390.1| - 0.00012 21.9 0.2 0.00039 20.2 0.1 1.9 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|313127120|ref|YP_004037390.1| - 0.00014 21.5 0.6 0.00048 19.8 0.6 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|313127120|ref|YP_004037390.1| - 0.00043 20.3 0.0 0.0006 19.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.17 gi|313127120|ref|YP_004037390.1| - 0.00067 19.5 0.6 0.0022 17.8 0.1 2.0 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|313127120|ref|YP_004037390.1| - 0.00085 19.9 0.0 0.0017 18.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|313127120|ref|YP_004037390.1| - 0.0025 18.4 0.2 0.0096 16.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|313127120|ref|YP_004037390.1| - 0.0025 17.5 0.2 0.005 16.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain GTP_EFTU PF00009.27 gi|313127120|ref|YP_004037390.1| - 0.0029 17.2 0.1 1.5 8.3 0.1 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MobB PF03205.14 gi|313127120|ref|YP_004037390.1| - 0.0031 17.4 0.1 0.0098 15.8 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|313127120|ref|YP_004037390.1| - 0.0059 16.5 0.2 0.1 12.5 0.1 2.4 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|313127120|ref|YP_004037390.1| - 0.011 15.9 0.1 0.029 14.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|313127120|ref|YP_004037390.1| - 0.016 15.4 1.1 0.035 14.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|313127120|ref|YP_004037390.1| - 0.017 14.9 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 gi|313127120|ref|YP_004037390.1| - 0.017 15.0 0.0 0.095 12.6 0.0 2.2 3 0 0 3 3 2 0 RsgA GTPase AAA_17 PF13207.6 gi|313127120|ref|YP_004037390.1| - 0.024 15.0 1.1 0.082 13.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|313127120|ref|YP_004037390.1| - 0.024 13.9 0.1 0.047 13.0 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.10 gi|313127120|ref|YP_004037390.1| - 0.025 14.0 0.1 0.054 12.9 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.14 gi|313127120|ref|YP_004037390.1| - 0.027 13.7 0.0 0.036 13.3 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.23 gi|313127120|ref|YP_004037390.1| - 0.03 14.4 0.4 0.096 12.8 0.1 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase Ploopntkinase3 PF18751.1 gi|313127120|ref|YP_004037390.1| - 0.031 14.2 0.0 0.077 12.9 0.0 1.6 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_33 PF13671.6 gi|313127120|ref|YP_004037390.1| - 0.032 14.4 0.3 0.094 12.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|313127120|ref|YP_004037390.1| - 0.044 13.0 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF815 PF05673.13 gi|313127120|ref|YP_004037390.1| - 0.072 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|313127120|ref|YP_004037390.1| - 0.2 12.1 0.0 0.36 11.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase B12-binding PF02310.19 gi|313127121|ref|YP_004037391.1| - 1.5e-22 79.9 0.2 1.7e-22 79.7 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.11 gi|313127121|ref|YP_004037391.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Staphylococcus haemolytic protein IMPDH PF00478.25 gi|313127121|ref|YP_004037391.1| - 0.14 11.1 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain GAF_2 PF13185.6 gi|313127122|ref|YP_004037392.1| - 7e-17 62.0 0.5 1.8e-16 60.7 0.1 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|313127122|ref|YP_004037392.1| - 1.4e-10 41.6 0.2 3.3e-10 40.4 0.0 1.7 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|313127122|ref|YP_004037392.1| - 1.4e-05 25.8 0.2 4.5e-05 24.1 0.1 2.0 2 0 0 2 2 2 1 GAF domain SnoaL_2 PF12680.7 gi|313127122|ref|YP_004037392.1| - 0.082 13.6 1.3 0.84 10.3 1.1 2.6 2 1 0 2 2 2 0 SnoaL-like domain DUF834 PF05754.14 gi|313127122|ref|YP_004037392.1| - 0.083 12.9 0.4 0.27 11.3 0.4 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF834) Peptidase_S9 PF00326.21 gi|313127123|ref|YP_004037393.1| - 5.7e-43 146.9 0.0 8.9e-43 146.2 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|313127123|ref|YP_004037393.1| - 6.2e-13 48.3 11.8 8.4e-05 22.4 0.2 6.6 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|313127123|ref|YP_004037393.1| - 6.9e-13 48.6 0.0 2.3e-12 47.0 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|313127123|ref|YP_004037393.1| - 1.6e-12 47.2 0.1 8.1e-08 31.8 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|313127123|ref|YP_004037393.1| - 5.9e-12 45.7 0.0 5.8e-08 32.7 0.1 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|313127123|ref|YP_004037393.1| - 2.7e-10 40.3 0.2 1.4e-05 24.9 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.12 gi|313127123|ref|YP_004037393.1| - 4.2e-08 32.2 0.0 3.2e-06 26.1 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|313127123|ref|YP_004037393.1| - 5e-06 27.3 4.8 0.00011 22.9 1.4 3.2 2 1 0 2 2 2 1 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|313127123|ref|YP_004037393.1| - 3.2e-05 23.9 0.0 0.0059 16.5 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.21 gi|313127123|ref|YP_004037393.1| - 6.8e-05 21.8 0.1 0.97 8.1 0.0 4.2 2 2 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9_N PF02897.15 gi|313127123|ref|YP_004037393.1| - 9.9e-05 21.3 0.8 0.059 12.2 0.4 2.7 1 1 1 2 2 2 2 Prolyl oligopeptidase, N-terminal beta-propeller domain Lactonase PF10282.9 gi|313127123|ref|YP_004037393.1| - 0.00052 19.4 0.0 0.14 11.4 0.0 2.3 2 0 0 2 2 2 2 Lactonase, 7-bladed beta-propeller Abhydrolase_3 PF07859.13 gi|313127123|ref|YP_004037393.1| - 0.0027 17.6 0.1 0.023 14.5 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold ANAPC4_WD40 PF12894.7 gi|313127123|ref|YP_004037393.1| - 0.004 17.4 0.0 1.8 8.9 0.0 3.6 3 0 0 3 3 3 1 Anaphase-promoting complex subunit 4 WD40 domain Abhydrolase_2 PF02230.16 gi|313127123|ref|YP_004037393.1| - 0.0098 15.7 0.0 1.8 8.3 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Kelch_6 PF13964.6 gi|313127123|ref|YP_004037393.1| - 0.01 16.1 0.1 16 6.0 0.0 4.4 5 0 0 5 5 4 0 Kelch motif Peptidase_S28 PF05577.12 gi|313127123|ref|YP_004037393.1| - 0.03 13.1 0.0 0.044 12.6 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Esterase PF00756.20 gi|313127123|ref|YP_004037393.1| - 0.031 13.9 0.0 0.19 11.3 0.0 2.2 1 1 0 1 1 1 0 Putative esterase PepSY PF03413.19 gi|313127123|ref|YP_004037393.1| - 0.07 13.7 0.7 3.2 8.4 0.1 3.2 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain Esterase_phd PF10503.9 gi|313127123|ref|YP_004037393.1| - 0.092 12.2 0.0 0.33 10.4 0.0 1.8 2 0 0 2 2 2 0 Esterase PHB depolymerase PQQ PF01011.21 gi|313127123|ref|YP_004037393.1| - 0.093 12.7 0.0 6.6 6.8 0.0 2.8 2 0 0 2 2 2 0 PQQ enzyme repeat Abhydrolase_4 PF08386.10 gi|313127123|ref|YP_004037393.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein MTH865 PF07747.11 gi|313127124|ref|YP_004037394.1| - 1.5e-29 101.6 0.2 1.7e-29 101.4 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family Peptidase_M42 PF05343.14 gi|313127125|ref|YP_004037395.1| - 1.1e-91 307.0 6.4 1.3e-91 306.7 6.4 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|313127125|ref|YP_004037395.1| - 1.7e-07 31.2 0.6 0.0015 18.2 0.1 2.4 2 1 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|313127125|ref|YP_004037395.1| - 1.8e-07 31.1 0.5 4e-07 29.9 0.5 1.6 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|313127125|ref|YP_004037395.1| - 0.00045 19.1 0.6 0.1 11.4 0.0 2.1 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Copper-bind PF00127.20 gi|313127126|ref|YP_004037396.1| - 5.1e-15 55.7 0.2 1e-14 54.8 0.2 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|313127126|ref|YP_004037396.1| - 0.048 13.5 10.6 0.048 13.5 10.6 3.5 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|313127126|ref|YP_004037396.1| - 0.084 12.2 7.4 0.32 10.4 7.4 2.1 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SSP160 PF06933.11 gi|313127126|ref|YP_004037396.1| - 5.1 5.2 15.9 7.5 4.6 15.9 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Glyco_transf_4 PF13439.6 gi|313127127|ref|YP_004037397.1| - 1.9e-18 67.1 0.2 6.2e-18 65.4 0.2 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313127127|ref|YP_004037397.1| - 3.6e-18 66.5 9.1 2.4e-17 63.9 3.9 2.3 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|313127127|ref|YP_004037397.1| - 1.9e-14 53.6 0.0 2.7e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313127127|ref|YP_004037397.1| - 8.3e-12 45.7 0.0 1.5e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|313127127|ref|YP_004037397.1| - 3.5e-06 27.1 0.0 1.2e-05 25.3 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like MgtE_N PF03448.17 gi|313127127|ref|YP_004037397.1| - 0.077 13.6 1.0 0.71 10.5 0.1 2.4 1 1 1 2 2 2 0 MgtE intracellular N domain DUF420 PF04238.12 gi|313127128|ref|YP_004037398.1| - 4.3e-33 114.4 8.7 4.3e-33 114.4 8.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|313127128|ref|YP_004037398.1| - 0.0034 17.6 4.0 0.0034 17.6 4.0 2.4 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) Orai-1 PF07856.12 gi|313127128|ref|YP_004037398.1| - 0.11 12.2 7.6 0.014 15.1 3.3 1.7 2 1 0 2 2 2 0 Mediator of CRAC channel activity DUF4029 PF13221.6 gi|313127128|ref|YP_004037398.1| - 0.18 12.5 2.7 0.45 11.2 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4029) DUF2231 PF09990.9 gi|313127128|ref|YP_004037398.1| - 1.4 9.4 13.9 0.043 14.2 4.3 2.8 2 2 1 3 3 3 0 Predicted membrane protein (DUF2231) DUF2070 PF09843.9 gi|313127128|ref|YP_004037398.1| - 6.2 5.0 8.9 7.2 4.8 8.9 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Fe-ADH_2 PF13685.6 gi|313127129|ref|YP_004037399.1| - 3.7e-61 207.0 2.0 4.7e-61 206.7 2.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|313127129|ref|YP_004037399.1| - 7.8e-21 74.3 5.7 6.7e-20 71.2 5.7 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|313127129|ref|YP_004037399.1| - 4.3e-11 42.5 0.1 1.3e-10 40.9 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase LysE PF01810.18 gi|313127130|ref|YP_004037400.1| - 2.1e-26 92.6 2.3 3.9e-24 85.2 2.3 2.2 1 1 0 1 1 1 1 LysE type translocator UPF0016 PF01169.19 gi|313127131|ref|YP_004037401.1| - 1.6e-26 92.4 15.4 1.3e-15 57.4 2.6 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 Fe_dep_repr_C PF02742.15 gi|313127132|ref|YP_004037402.1| - 8.2e-29 99.5 1.1 1.7e-28 98.5 1.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|313127132|ref|YP_004037402.1| - 1e-19 70.5 0.1 2.3e-19 69.3 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|313127132|ref|YP_004037402.1| - 1.9e-15 56.9 0.8 4.1e-15 55.8 0.1 1.9 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|313127132|ref|YP_004037402.1| - 3.5e-07 30.0 0.0 1.1e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|313127132|ref|YP_004037402.1| - 5.6e-07 29.4 0.0 1.2e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|313127132|ref|YP_004037402.1| - 3.1e-06 27.1 0.0 6.4e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 gi|313127132|ref|YP_004037402.1| - 5.1e-06 26.0 0.0 9.7e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_12 PF08461.10 gi|313127132|ref|YP_004037402.1| - 5.9e-06 26.1 0.1 6.3e-05 22.8 0.1 2.6 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|313127132|ref|YP_004037402.1| - 2.2e-05 24.2 0.1 0.00022 21.0 0.0 2.4 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313127132|ref|YP_004037402.1| - 0.00036 20.0 0.0 0.001 18.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313127132|ref|YP_004037402.1| - 0.00036 20.5 0.1 0.0077 16.3 0.0 2.9 3 1 0 3 3 3 1 Helix-turn-helix domain TrmB PF01978.19 gi|313127132|ref|YP_004037402.1| - 0.00082 19.2 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313127132|ref|YP_004037402.1| - 0.001 18.8 0.0 0.0028 17.5 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_1 PF00126.27 gi|313127132|ref|YP_004037402.1| - 0.0019 18.1 0.1 0.011 15.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2250 PF10007.9 gi|313127132|ref|YP_004037402.1| - 0.0036 17.4 0.1 0.0077 16.3 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|313127132|ref|YP_004037402.1| - 0.0038 17.6 0.0 0.0087 16.4 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|313127132|ref|YP_004037402.1| - 0.0043 17.5 0.0 0.0094 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.15 gi|313127132|ref|YP_004037402.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Penicillinase_R PF03965.16 gi|313127132|ref|YP_004037402.1| - 0.012 15.9 0.0 0.038 14.3 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor GntR PF00392.21 gi|313127132|ref|YP_004037402.1| - 0.015 14.9 0.0 0.079 12.6 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family FeoC PF09012.10 gi|313127132|ref|YP_004037402.1| - 0.037 14.1 0.0 0.092 12.8 0.0 1.6 2 0 0 2 2 1 0 FeoC like transcriptional regulator HTH_13 PF11972.8 gi|313127132|ref|YP_004037402.1| - 0.04 14.0 0.0 0.076 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|313127132|ref|YP_004037402.1| - 0.044 13.2 0.0 27 4.3 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Topoisom_bac PF01131.20 gi|313127132|ref|YP_004037402.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase PALP PF00291.25 gi|313127133|ref|YP_004037403.1| - 1.6e-61 208.4 3.7 1.8e-61 208.1 3.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Amino_oxidase PF01593.24 gi|313127134|ref|YP_004037404.1| - 3.8e-47 161.6 0.5 4.9e-47 161.2 0.5 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|313127134|ref|YP_004037404.1| - 1.8e-16 60.1 0.1 4.2e-16 58.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|313127134|ref|YP_004037404.1| - 2.9e-12 46.8 1.6 2.4e-05 24.1 0.7 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313127134|ref|YP_004037404.1| - 2.4e-09 36.9 1.7 9.5e-05 21.8 0.0 2.4 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313127134|ref|YP_004037404.1| - 8.3e-08 31.3 0.1 9.1e-05 21.3 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|313127134|ref|YP_004037404.1| - 7.1e-07 29.7 1.6 0.00011 22.7 0.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313127134|ref|YP_004037404.1| - 9.4e-07 28.3 1.4 1.4e-06 27.7 0.4 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|313127134|ref|YP_004037404.1| - 3.3e-06 26.6 0.5 0.00012 21.5 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|313127134|ref|YP_004037404.1| - 1.2e-05 24.7 0.4 0.058 12.6 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|313127134|ref|YP_004037404.1| - 4.5e-05 23.0 0.5 4.5e-05 23.0 0.5 2.0 3 1 0 3 3 3 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|313127134|ref|YP_004037404.1| - 0.0001 21.7 0.2 0.00021 20.7 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|313127134|ref|YP_004037404.1| - 0.00018 21.9 0.5 0.005 17.2 0.0 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding CoA_transf_3 PF02515.17 gi|313127134|ref|YP_004037404.1| - 0.00055 19.2 0.8 0.00089 18.5 0.3 1.6 2 0 0 2 2 2 1 CoA-transferase family III Thi4 PF01946.17 gi|313127134|ref|YP_004037404.1| - 0.0007 18.9 0.1 0.0013 18.0 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|313127134|ref|YP_004037404.1| - 0.0013 18.7 2.6 0.098 12.6 0.2 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|313127134|ref|YP_004037404.1| - 0.0037 16.4 0.4 0.0037 16.4 0.4 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.16 gi|313127134|ref|YP_004037404.1| - 0.004 16.8 0.9 0.084 12.5 0.1 2.6 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA YjeF_N PF03853.15 gi|313127134|ref|YP_004037404.1| - 0.0075 16.2 0.7 0.022 14.7 0.2 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus TrkA_N PF02254.18 gi|313127134|ref|YP_004037404.1| - 0.047 13.9 0.5 1 9.6 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain Shikimate_DH PF01488.20 gi|313127134|ref|YP_004037404.1| - 0.064 13.3 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|313127134|ref|YP_004037404.1| - 0.071 12.1 3.1 0.41 9.6 0.4 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|313127134|ref|YP_004037404.1| - 0.098 12.5 1.0 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|313127134|ref|YP_004037404.1| - 0.12 11.8 0.0 2.7 7.4 0.0 2.2 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family FMO-like PF00743.19 gi|313127134|ref|YP_004037404.1| - 0.13 10.7 0.0 0.19 10.1 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like XdhC_C PF13478.6 gi|313127134|ref|YP_004037404.1| - 0.16 12.5 0.2 0.9 10.0 0.0 2.3 2 1 0 2 2 2 0 XdhC Rossmann domain AdoHcyase_NAD PF00670.21 gi|313127134|ref|YP_004037404.1| - 0.67 10.0 3.5 14 5.7 0.2 2.4 3 0 0 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Trp_halogenase PF04820.14 gi|313127134|ref|YP_004037404.1| - 1 8.1 3.0 0.65 8.8 0.5 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Metallophos_2 PF12850.7 gi|313127135|ref|YP_004037405.1| - 2.1e-10 41.1 0.1 2.8e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313127135|ref|YP_004037405.1| - 6.4e-09 36.6 0.0 1.4e-08 35.5 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_24 PF13412.6 gi|313127136|ref|YP_004037406.1| - 5.1e-10 38.8 0.0 2.1e-09 36.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313127136|ref|YP_004037406.1| - 5.4e-09 35.8 0.2 1.7e-08 34.2 0.2 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313127136|ref|YP_004037406.1| - 1.2e-06 28.3 0.0 3.1e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|313127136|ref|YP_004037406.1| - 4e-06 27.2 4.8 0.00014 22.3 0.1 3.5 4 0 0 4 4 4 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313127136|ref|YP_004037406.1| - 0.00017 21.3 0.0 0.00042 20.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313127136|ref|YP_004037406.1| - 0.00022 21.1 0.0 0.00054 19.9 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|313127136|ref|YP_004037406.1| - 0.0017 18.2 0.2 0.0039 17.1 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313127136|ref|YP_004037406.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family NMD3 PF04981.13 gi|313127136|ref|YP_004037406.1| - 0.0025 17.3 0.1 0.077 12.4 0.1 2.1 2 0 0 2 2 2 1 NMD3 family Rrf2 PF02082.20 gi|313127136|ref|YP_004037406.1| - 0.0028 17.9 0.0 0.011 16.1 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|313127136|ref|YP_004037406.1| - 0.0032 17.6 0.1 0.0087 16.2 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|313127136|ref|YP_004037406.1| - 0.0049 16.9 0.1 0.011 15.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|313127136|ref|YP_004037406.1| - 0.0089 16.0 0.0 0.028 14.4 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix Nitro_FeMo-Co PF02579.17 gi|313127136|ref|YP_004037406.1| - 0.0096 16.2 0.2 0.025 14.9 0.2 1.7 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor HTH_13 PF11972.8 gi|313127136|ref|YP_004037406.1| - 0.012 15.7 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Mnd1 PF03962.15 gi|313127136|ref|YP_004037406.1| - 0.022 15.0 0.1 0.073 13.4 0.0 1.9 2 0 0 2 2 1 0 Mnd1 HTH domain DUF4364 PF14277.6 gi|313127136|ref|YP_004037406.1| - 0.056 13.2 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) P22_Cro PF14549.6 gi|313127136|ref|YP_004037406.1| - 0.07 13.0 0.1 0.18 11.7 0.1 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_AsnC-type PF13404.6 gi|313127136|ref|YP_004037406.1| - 0.081 12.8 0.2 1.3 8.9 0.1 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313127136|ref|YP_004037406.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain YdaS_antitoxin PF15943.5 gi|313127136|ref|YP_004037406.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_3 PF01381.22 gi|313127136|ref|YP_004037406.1| - 0.12 12.4 0.1 0.41 10.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix Mrr_N PF14338.6 gi|313127136|ref|YP_004037406.1| - 0.14 12.3 0.3 0.63 10.2 0.0 2.3 2 1 0 2 2 2 0 Mrr N-terminal domain LexA_DNA_bind PF01726.16 gi|313127136|ref|YP_004037406.1| - 0.17 11.7 0.2 1 9.2 0.0 2.2 2 1 0 2 2 2 0 LexA DNA binding domain HTH_28 PF13518.6 gi|313127136|ref|YP_004037406.1| - 0.29 11.3 1.4 0.59 10.3 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DnaJ PF00226.31 gi|313127137|ref|YP_004037407.1| - 2.2e-08 34.1 0.2 4e-08 33.3 0.2 1.4 1 0 0 1 1 1 1 DnaJ domain PPDK_N PF01326.19 gi|313127138|ref|YP_004037408.1| - 3.6e-109 365.0 0.2 5.4e-109 364.4 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|313127138|ref|YP_004037408.1| - 7.2e-80 268.2 0.0 1.1e-79 267.7 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|313127138|ref|YP_004037408.1| - 7.4e-28 96.1 2.7 1.8e-27 94.9 2.7 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|313127138|ref|YP_004037408.1| - 0.0029 17.7 1.7 5.7 7.1 0.0 3.7 3 0 0 3 3 3 2 PEP-utilising enzyme, N-terminal Pyridoxal_deC PF00282.19 gi|313127139|ref|YP_004037409.1| - 4.8e-29 101.2 0.0 7.4e-29 100.6 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|313127139|ref|YP_004037409.1| - 2.5e-11 43.1 0.0 2.9e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|313127139|ref|YP_004037409.1| - 7.8e-05 22.1 0.0 0.00012 21.4 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.19 gi|313127139|ref|YP_004037409.1| - 0.0014 17.3 0.0 0.002 16.8 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase DegT_DnrJ_EryC1 PF01041.17 gi|313127139|ref|YP_004037409.1| - 0.04 13.2 1.0 0.058 12.7 1.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family SNARE_assoc PF09335.11 gi|313127140|ref|YP_004037410.1| - 7.7e-09 36.1 5.5 3.8e-08 33.8 5.5 1.9 1 1 0 1 1 1 1 SNARE associated Golgi protein CMD PF02627.20 gi|313127141|ref|YP_004037411.1| - 6.4e-14 51.8 0.5 9.9e-14 51.2 0.5 1.4 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family CENP-F_leu_zip PF10473.9 gi|313127141|ref|YP_004037411.1| - 0.02 14.9 0.4 0.032 14.2 0.4 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Thioredoxin_2 PF13098.6 gi|313127141|ref|YP_004037411.1| - 0.021 15.3 0.0 0.029 14.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain TatD_DNase PF01026.21 gi|313127141|ref|YP_004037411.1| - 0.042 13.2 0.1 0.05 13.0 0.1 1.1 1 0 0 1 1 1 0 TatD related DNase GvpG PF05120.12 gi|313127141|ref|YP_004037411.1| - 0.11 12.5 1.3 0.18 11.8 1.3 1.4 1 0 0 1 1 1 0 Gas vesicle protein G THUMP PF02926.17 gi|313127141|ref|YP_004037411.1| - 0.13 12.4 0.1 0.2 11.8 0.1 1.3 1 0 0 1 1 1 0 THUMP domain tRNA-synt_1g PF09334.11 gi|313127143|ref|YP_004037413.1| - 2.2e-145 484.3 0.0 3e-145 483.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|313127143|ref|YP_004037413.1| - 1.9e-23 82.4 0.2 6.6e-23 80.6 0.1 1.9 2 0 0 2 2 2 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|313127143|ref|YP_004037413.1| - 2.3e-15 55.9 1.5 8.9e-09 34.1 0.1 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|313127143|ref|YP_004037413.1| - 3.3e-10 39.8 0.0 1.3e-06 28.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|313127143|ref|YP_004037413.1| - 4.2e-08 33.3 0.0 1e-07 32.1 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|313127143|ref|YP_004037413.1| - 0.024 13.6 0.7 0.82 8.5 0.2 2.8 2 1 0 2 2 2 0 tRNA synthetases class I (K) YL1_C PF08265.11 gi|313127143|ref|YP_004037413.1| - 0.071 12.9 0.0 0.84 9.5 0.0 2.2 2 0 0 2 2 2 0 YL1 nuclear protein C-terminal domain tRNA-synt_1d PF00750.19 gi|313127143|ref|YP_004037413.1| - 0.087 11.8 0.0 1.1 8.1 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (R) Mpt_N PF09176.11 gi|313127143|ref|YP_004037413.1| - 0.16 12.1 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal DUF2423 PF10338.9 gi|313127143|ref|YP_004037413.1| - 0.25 11.6 0.2 0.51 10.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) PK PF00224.21 gi|313127144|ref|YP_004037414.1| - 5.4e-108 361.0 3.8 8e-108 360.4 3.8 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|313127144|ref|YP_004037414.1| - 3.4e-31 107.9 0.1 7.4e-31 106.8 0.1 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|313127144|ref|YP_004037414.1| - 7.7e-09 35.2 0.2 9.7e-08 31.6 0.0 3.0 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|313127144|ref|YP_004037414.1| - 0.0027 16.9 2.4 0.0054 15.9 1.1 2.0 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family PGF-CTERM PF18204.1 gi|313127146|ref|YP_004037416.1| - 4.1 7.5 16.4 0.4 10.7 6.5 2.3 2 0 0 2 2 2 0 PGF-CTERM motif Mrr_cat PF04471.12 gi|313127147|ref|YP_004037417.1| - 7.4e-08 32.4 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF4352 PF11611.8 gi|313127147|ref|YP_004037417.1| - 1.6e-05 25.2 0.0 3.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) NfeD PF01957.18 gi|313127148|ref|YP_004037418.1| - 3.3e-06 27.4 0.0 6.6e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding YtpI PF14007.6 gi|313127148|ref|YP_004037418.1| - 0.12 12.5 0.7 0.2 11.8 0.7 1.3 1 0 0 1 1 1 0 YtpI-like protein PUA PF01472.20 gi|313127148|ref|YP_004037418.1| - 0.21 11.6 1.1 0.33 11.0 0.1 1.8 2 0 0 2 2 2 0 PUA domain Band_7 PF01145.25 gi|313127149|ref|YP_004037419.1| - 8.6e-38 130.1 4.2 8.6e-38 130.1 4.2 2.4 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|313127149|ref|YP_004037419.1| - 0.00077 19.2 0.6 0.0022 17.8 0.2 1.9 2 0 0 2 2 2 1 SPFH domain-Band 7 family HTH_20 PF12840.7 gi|313127150|ref|YP_004037420.1| - 2.8e-10 40.1 0.4 8.5e-05 22.5 0.3 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|313127150|ref|YP_004037420.1| - 1.1e-09 38.0 0.6 4.2e-06 26.5 0.3 2.5 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|313127150|ref|YP_004037420.1| - 1.5e-08 34.3 0.0 4e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|313127150|ref|YP_004037420.1| - 1.8e-07 30.6 0.0 0.00014 21.3 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|313127150|ref|YP_004037420.1| - 1.5e-06 27.9 0.9 0.00031 20.5 0.2 3.1 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|313127150|ref|YP_004037420.1| - 6.8e-06 25.9 0.0 1.4e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|313127150|ref|YP_004037420.1| - 1.2e-05 25.4 0.0 0.17 12.1 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain TrmB PF01978.19 gi|313127150|ref|YP_004037420.1| - 2e-05 24.4 0.0 0.00066 19.5 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313127150|ref|YP_004037420.1| - 0.00018 21.4 0.0 0.001 19.0 0.0 2.0 2 0 0 2 2 2 1 MarR family RP-C PF03428.13 gi|313127150|ref|YP_004037420.1| - 0.00025 20.8 0.1 0.38 10.4 0.0 2.3 2 0 0 2 2 2 2 Replication protein C N-terminal domain HTH_Crp_2 PF13545.6 gi|313127150|ref|YP_004037420.1| - 0.00063 19.7 0.0 0.0021 18.0 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313127150|ref|YP_004037420.1| - 0.0008 19.2 0.2 0.0018 18.0 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313127150|ref|YP_004037420.1| - 0.0014 18.8 0.1 0.0056 16.8 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|313127150|ref|YP_004037420.1| - 0.0023 18.4 0.1 0.15 12.5 0.0 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|313127150|ref|YP_004037420.1| - 0.0029 17.3 0.0 0.0068 16.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|313127150|ref|YP_004037420.1| - 0.005 16.8 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix GntR PF00392.21 gi|313127150|ref|YP_004037420.1| - 0.0077 15.9 0.1 0.075 12.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|313127150|ref|YP_004037420.1| - 0.049 13.4 0.2 0.36 10.7 0.0 2.4 3 0 0 3 3 3 0 HTH DNA binding domain HTH_3 PF01381.22 gi|313127150|ref|YP_004037420.1| - 0.06 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_6 PF01418.17 gi|313127150|ref|YP_004037420.1| - 0.096 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF2250 PF10007.9 gi|313127150|ref|YP_004037420.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_17 PF12728.7 gi|313127150|ref|YP_004037420.1| - 0.15 12.3 0.0 0.63 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|313127151|ref|YP_004037421.1| - 0.009 15.8 0.1 0.012 15.3 0.1 1.2 1 0 0 1 1 1 1 LexA DNA binding domain RPA_C PF08784.11 gi|313127151|ref|YP_004037421.1| - 0.044 14.4 0.0 0.054 14.2 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal HTH_24 PF13412.6 gi|313127151|ref|YP_004037421.1| - 0.045 13.3 0.2 10 5.7 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF3263 PF11662.8 gi|313127151|ref|YP_004037421.1| - 0.054 13.4 0.0 0.068 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) GerE PF00196.19 gi|313127151|ref|YP_004037421.1| - 0.064 12.8 0.1 0.56 9.8 0.1 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|313127151|ref|YP_004037421.1| - 0.17 11.8 0.1 1.1 9.2 0.1 2.2 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain LPG_synthase_TM PF03706.13 gi|313127152|ref|YP_004037422.1| - 3e-39 135.4 31.7 4.2e-39 134.9 31.7 1.2 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|313127152|ref|YP_004037422.1| - 5e-29 101.3 0.0 8.7e-29 100.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313127152|ref|YP_004037422.1| - 7.4e-13 48.9 0.3 7.4e-13 48.9 0.3 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313127152|ref|YP_004037422.1| - 0.00031 20.3 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|313127152|ref|YP_004037422.1| - 0.025 15.1 0.1 0.051 14.1 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 MLTR_LBD PF17765.1 gi|313127152|ref|YP_004037422.1| - 0.048 13.8 2.3 0.24 11.5 0.2 2.6 1 1 1 2 2 2 0 MmyB-like transcription regulator ligand binding domain NTPase_I-T PF01931.18 gi|313127153|ref|YP_004037423.1| - 4.7e-48 163.1 0.0 5.2e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Peripla_BP_2 PF01497.18 gi|313127154|ref|YP_004037424.1| - 4.1e-17 62.5 0.0 7.6e-17 61.7 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TFIIB PF00382.19 gi|313127155|ref|YP_004037425.1| - 8.1e-40 134.7 0.2 1.3e-20 73.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313127155|ref|YP_004037425.1| - 3.4e-16 58.5 3.5 6.8e-16 57.5 3.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|313127155|ref|YP_004037425.1| - 0.00041 19.8 0.6 0.55 9.8 0.0 4.0 4 0 0 4 4 4 1 Sigma-70, region 4 A2L_zn_ribbon PF08792.10 gi|313127155|ref|YP_004037425.1| - 0.00046 19.8 0.7 0.00071 19.2 0.7 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain DZR PF12773.7 gi|313127155|ref|YP_004037425.1| - 0.015 15.3 0.3 0.026 14.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cyclin_C PF02984.19 gi|313127155|ref|YP_004037425.1| - 0.02 15.0 0.1 6.5 6.9 0.1 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain Lar_restr_allev PF14354.6 gi|313127155|ref|YP_004037425.1| - 0.026 14.9 0.6 0.026 14.9 0.6 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|313127155|ref|YP_004037425.1| - 0.027 14.4 1.2 0.066 13.1 1.2 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Anti-TRAP PF15777.5 gi|313127155|ref|YP_004037425.1| - 0.027 14.4 0.5 0.052 13.5 0.5 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-ribbon_3 PF13248.6 gi|313127155|ref|YP_004037425.1| - 0.07 12.6 4.1 1.2 8.7 4.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|313127155|ref|YP_004037425.1| - 0.16 12.2 1.8 0.29 11.3 1.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|313127155|ref|YP_004037425.1| - 0.55 10.4 4.0 1.1 9.4 0.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|313127155|ref|YP_004037425.1| - 0.56 10.2 2.1 1.8 8.6 2.1 1.8 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_9 PF14369.6 gi|313127155|ref|YP_004037425.1| - 1.3 9.4 4.2 0.56 10.5 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbon zf-Mss51 PF13824.6 gi|313127155|ref|YP_004037425.1| - 4.2 7.6 5.7 6.6 6.9 0.2 3.0 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DHquinase_I PF01487.15 gi|313127156|ref|YP_004037426.1| - 2.5e-43 149.0 0.1 3e-43 148.7 0.1 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase PP_kinase_C_1 PF17941.1 gi|313127156|ref|YP_004037426.1| - 0.025 14.1 1.0 0.17 11.4 0.3 2.0 1 1 1 2 2 2 0 Polyphosphate kinase C-terminal domain 1 TMEM126 PF07114.11 gi|313127157|ref|YP_004037427.1| - 0.0011 18.4 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Transmembrane protein 126 zf-ribbon_3 PF13248.6 gi|313127157|ref|YP_004037427.1| - 0.0014 18.0 0.9 0.0022 17.3 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|313127157|ref|YP_004037427.1| - 0.0022 18.0 0.5 0.0031 17.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|313127157|ref|YP_004037427.1| - 0.0074 16.0 0.9 0.011 15.4 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|313127157|ref|YP_004037427.1| - 0.016 16.0 1.2 0.022 15.5 0.7 1.5 1 1 1 2 2 2 0 zinc-ribbon family DUF4538 PF15061.6 gi|313127157|ref|YP_004037427.1| - 0.032 14.0 0.6 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Prok-RING_4 PF14447.6 gi|313127157|ref|YP_004037427.1| - 0.055 13.3 1.2 0.75 9.7 1.2 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 Prok-RING_1 PF14446.6 gi|313127157|ref|YP_004037427.1| - 0.055 13.4 0.5 0.078 12.9 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF3953 PF13129.6 gi|313127157|ref|YP_004037427.1| - 0.094 12.5 0.1 0.094 12.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) Rad50_zn_hook PF04423.14 gi|313127157|ref|YP_004037427.1| - 0.11 12.3 2.9 0.33 10.8 0.5 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif UCR_6-4kD PF08997.10 gi|313127157|ref|YP_004037427.1| - 0.13 12.2 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein zf-Di19 PF05605.12 gi|313127157|ref|YP_004037427.1| - 0.42 10.9 2.3 7.7 6.9 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding UPF0547 PF10571.9 gi|313127157|ref|YP_004037427.1| - 0.59 10.3 3.8 1 9.5 3.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 TM2 PF05154.16 gi|313127157|ref|YP_004037427.1| - 4.2 7.8 7.7 18 5.8 7.7 1.9 1 1 0 1 1 1 0 TM2 domain DHQS PF01959.16 gi|313127158|ref|YP_004037428.1| - 1.9e-148 494.1 1.5 2.2e-148 493.9 1.5 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|313127158|ref|YP_004037428.1| - 0.0012 18.4 0.0 0.031 13.8 0.0 2.2 2 0 0 2 2 2 1 Hint module Hint_2 PF13403.6 gi|313127158|ref|YP_004037428.1| - 0.01 16.1 2.3 1 9.6 0.1 3.3 2 1 2 4 4 4 0 Hint domain QRPTase_C PF01729.19 gi|313127158|ref|YP_004037428.1| - 0.037 13.8 0.3 0.32 10.8 0.1 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain SHOCT PF09851.9 gi|313127159|ref|YP_004037429.1| - 3.5e-07 29.7 2.4 5.6e-07 29.1 2.4 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|313127159|ref|YP_004037429.1| - 0.00015 21.7 1.9 0.00026 21.0 1.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Yip1 PF04893.17 gi|313127159|ref|YP_004037429.1| - 0.0032 17.2 5.6 0.0036 17.0 5.6 1.1 1 0 0 1 1 1 1 Yip1 domain Phage_holin_3_6 PF07332.11 gi|313127159|ref|YP_004037429.1| - 0.055 13.5 6.5 0.074 13.1 6.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF533 PF04391.12 gi|313127159|ref|YP_004037429.1| - 0.092 12.3 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF533) Apq12 PF12716.7 gi|313127159|ref|YP_004037429.1| - 3.6 7.6 8.0 1.6 8.7 2.1 2.2 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis DeoC PF01791.9 gi|313127160|ref|YP_004037430.1| - 1.1e-44 152.8 0.1 1.4e-44 152.5 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|313127160|ref|YP_004037430.1| - 0.00063 19.3 0.1 0.00095 18.7 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.24 gi|313127160|ref|YP_004037430.1| - 0.011 15.3 0.2 0.017 14.7 0.2 1.3 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DHquinase_I PF01487.15 gi|313127160|ref|YP_004037430.1| - 0.043 14.0 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Type I 3-dehydroquinase DUF561 PF04481.12 gi|313127160|ref|YP_004037430.1| - 0.061 12.5 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) UvrA_inter PF17760.1 gi|313127160|ref|YP_004037430.1| - 0.097 12.8 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 UvrA interaction domain G3P_antiterm PF04309.12 gi|313127160|ref|YP_004037430.1| - 0.12 11.7 0.5 5.5 6.4 0.0 2.9 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|313127161|ref|YP_004037431.1| - 7.1e-94 313.5 0.0 8.5e-94 313.2 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|313127161|ref|YP_004037431.1| - 8e-05 22.2 0.2 0.00014 21.4 0.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|313127161|ref|YP_004037431.1| - 0.0041 16.6 0.7 0.077 12.4 0.7 2.1 2 0 0 2 2 2 1 PcrB family PALP PF00291.25 gi|313127162|ref|YP_004037432.1| - 2.8e-37 128.7 0.9 3.6e-37 128.4 0.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|313127163|ref|YP_004037433.1| - 3.6e-70 236.0 0.0 4e-70 235.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|313127163|ref|YP_004037433.1| - 2.4e-07 30.1 1.0 1e-06 28.0 1.2 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|313127163|ref|YP_004037433.1| - 0.00029 20.1 0.5 0.0056 15.9 0.2 2.6 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.19 gi|313127163|ref|YP_004037433.1| - 0.00071 19.4 0.1 0.0022 17.8 0.0 1.8 3 0 0 3 3 3 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.21 gi|313127163|ref|YP_004037433.1| - 0.0015 18.0 0.0 0.029 13.8 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|313127163|ref|YP_004037433.1| - 0.0025 17.1 0.1 0.0051 16.1 0.0 1.5 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|313127163|ref|YP_004037433.1| - 0.0081 15.6 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 PcrB family PEP_hydrolase PF09370.10 gi|313127163|ref|YP_004037433.1| - 0.1 11.8 0.2 2.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like ThiG PF05690.14 gi|313127163|ref|YP_004037433.1| - 0.18 11.1 2.3 0.33 10.2 0.7 2.3 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DNA_binding_1 PF01035.20 gi|313127164|ref|YP_004037434.1| - 2e-08 34.2 0.0 3.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain CPBP PF02517.16 gi|313127165|ref|YP_004037435.1| - 1e-10 41.8 10.1 1e-10 41.8 10.1 2.3 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease Lon_C PF05362.13 gi|313127166|ref|YP_004037436.1| - 6.2e-33 114.1 2.8 1e-32 113.4 2.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|313127166|ref|YP_004037436.1| - 1.4e-29 103.3 0.0 7.1e-22 77.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|313127166|ref|YP_004037436.1| - 5.1e-18 65.2 0.1 9.7e-11 41.4 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|313127166|ref|YP_004037436.1| - 7.8e-15 55.0 0.0 1.8e-08 34.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|313127166|ref|YP_004037436.1| - 2.2e-10 40.7 0.0 0.00072 19.6 0.0 2.8 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|313127166|ref|YP_004037436.1| - 1.7e-09 37.6 0.3 4e-09 36.4 0.3 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|313127166|ref|YP_004037436.1| - 1.5e-07 31.9 0.0 0.023 15.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|313127166|ref|YP_004037436.1| - 1.6e-07 30.7 0.1 0.0077 15.3 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain RuvB_N PF05496.12 gi|313127166|ref|YP_004037436.1| - 2.8e-06 27.2 0.1 0.004 16.9 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|313127166|ref|YP_004037436.1| - 1.3e-05 24.6 0.1 0.06 12.6 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|313127166|ref|YP_004037436.1| - 8.1e-05 22.9 0.0 0.0024 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|313127166|ref|YP_004037436.1| - 0.0002 20.9 0.1 0.00057 19.4 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|313127166|ref|YP_004037436.1| - 0.00031 20.9 0.0 0.44 10.7 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM_lid PF17855.1 gi|313127166|ref|YP_004037436.1| - 0.00033 21.0 0.5 0.00099 19.5 0.0 2.0 2 0 0 2 2 2 1 MCM AAA-lid domain AAA_3 PF07726.11 gi|313127166|ref|YP_004037436.1| - 0.00042 20.2 0.1 0.54 10.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.11 gi|313127166|ref|YP_004037436.1| - 0.00085 18.3 0.0 0.065 12.1 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_19 PF13245.6 gi|313127166|ref|YP_004037436.1| - 0.0011 19.3 0.0 0.62 10.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|313127166|ref|YP_004037436.1| - 0.0018 18.0 0.0 0.075 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|313127166|ref|YP_004037436.1| - 0.0046 17.1 0.0 1 9.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) PhoH PF02562.16 gi|313127166|ref|YP_004037436.1| - 0.012 15.0 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|313127166|ref|YP_004037436.1| - 0.018 15.2 0.0 0.063 13.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|313127166|ref|YP_004037436.1| - 0.022 13.9 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|313127166|ref|YP_004037436.1| - 0.032 14.8 0.0 0.088 13.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|313127166|ref|YP_004037436.1| - 0.043 14.2 0.0 0.35 11.2 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|313127166|ref|YP_004037436.1| - 0.048 12.6 0.0 0.079 11.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TctB PF07331.11 gi|313127166|ref|YP_004037436.1| - 0.051 13.9 0.1 0.088 13.1 0.1 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family IstB_IS21 PF01695.17 gi|313127166|ref|YP_004037436.1| - 0.054 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|313127166|ref|YP_004037436.1| - 0.079 13.5 0.0 0.34 11.5 0.0 2.1 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|313127166|ref|YP_004037436.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|313127166|ref|YP_004037436.1| - 0.12 11.5 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_10 PF12846.7 gi|313127166|ref|YP_004037436.1| - 0.12 11.2 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain CTP_transf_like PF01467.26 gi|313127167|ref|YP_004037437.1| - 9.9e-14 51.7 0.0 1.9e-13 50.8 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like UPF0126 PF03458.13 gi|313127168|ref|YP_004037438.1| - 5.6e-40 135.1 29.0 2e-20 72.4 10.6 2.3 2 0 0 2 2 2 2 UPF0126 domain Cpn60_TCP1 PF00118.24 gi|313127169|ref|YP_004037439.1| - 4.2e-152 507.2 12.0 4.7e-152 507.0 12.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SIS_2 PF13580.6 gi|313127169|ref|YP_004037439.1| - 0.023 14.7 0.1 0.12 12.4 0.1 2.3 1 0 0 1 1 1 0 SIS domain Nitro_FeMo-Co PF02579.17 gi|313127169|ref|YP_004037439.1| - 0.025 14.9 1.6 0.41 11.0 0.0 3.2 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor GHMP_kinases_C PF08544.13 gi|313127169|ref|YP_004037439.1| - 0.092 13.1 0.2 0.36 11.2 0.2 2.0 1 0 0 1 1 1 0 GHMP kinases C terminal Amidohydro_2 PF04909.14 gi|313127170|ref|YP_004037440.1| - 6.2e-08 32.8 1.1 9e-08 32.2 1.0 1.4 1 1 0 1 1 1 1 Amidohydrolase Glycos_transf_2 PF00535.26 gi|313127171|ref|YP_004037441.1| - 1e-13 51.5 1.0 3.8e-13 49.6 0.5 2.2 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313127171|ref|YP_004037441.1| - 7.6e-07 29.2 2.9 3.6e-06 27.0 2.9 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313127171|ref|YP_004037441.1| - 0.00063 19.3 0.0 0.015 14.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 LysR_substrate PF03466.20 gi|313127171|ref|YP_004037441.1| - 0.0013 18.1 0.1 0.45 9.8 0.0 2.4 2 1 0 2 2 2 2 LysR substrate binding domain Glyco_trans_2_3 PF13632.6 gi|313127171|ref|YP_004037441.1| - 0.056 13.4 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|313127171|ref|YP_004037441.1| - 0.068 12.6 0.0 0.36 10.3 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 21 Methyltransf_25 PF13649.6 gi|313127172|ref|YP_004037442.1| - 3.8e-24 85.2 0.1 6.5e-24 84.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313127172|ref|YP_004037442.1| - 8e-24 84.1 0.1 2.1e-23 82.8 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127172|ref|YP_004037442.1| - 3.8e-17 62.5 0.0 5.3e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313127172|ref|YP_004037442.1| - 6.8e-16 58.3 0.0 3.1e-15 56.2 0.0 1.8 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|313127172|ref|YP_004037442.1| - 2.1e-13 50.8 0.0 3.3e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313127172|ref|YP_004037442.1| - 4.4e-12 46.1 0.0 5.5e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|313127172|ref|YP_004037442.1| - 1.7e-06 27.9 0.0 1e-05 25.3 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|313127172|ref|YP_004037442.1| - 0.0001 21.3 0.0 0.00015 20.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|313127172|ref|YP_004037442.1| - 0.00013 21.6 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|313127172|ref|YP_004037442.1| - 0.00031 20.1 0.0 0.00044 19.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|313127172|ref|YP_004037442.1| - 0.00033 19.8 0.0 0.00042 19.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|313127172|ref|YP_004037442.1| - 0.0005 19.6 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_20 PF12147.8 gi|313127172|ref|YP_004037442.1| - 0.00062 19.0 0.0 0.0021 17.3 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|313127172|ref|YP_004037442.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|313127172|ref|YP_004037442.1| - 0.0021 18.1 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|313127172|ref|YP_004037442.1| - 0.0031 17.1 0.0 0.004 16.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 gi|313127172|ref|YP_004037442.1| - 0.0033 17.0 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 gi|313127172|ref|YP_004037442.1| - 0.0035 16.4 0.0 0.0055 15.7 0.0 1.3 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TehB PF03848.14 gi|313127172|ref|YP_004037442.1| - 0.015 14.7 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB TPMT PF05724.11 gi|313127172|ref|YP_004037442.1| - 0.017 14.8 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 gi|313127172|ref|YP_004037442.1| - 0.024 14.4 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|313127172|ref|YP_004037442.1| - 0.025 14.7 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_3 PF01596.17 gi|313127172|ref|YP_004037442.1| - 0.03 13.5 0.0 0.044 12.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltrans_SAM PF10672.9 gi|313127172|ref|YP_004037442.1| - 0.07 12.3 0.0 0.097 11.8 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|313127172|ref|YP_004037442.1| - 0.076 12.8 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|313127172|ref|YP_004037442.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|313127172|ref|YP_004037442.1| - 0.12 13.4 0.2 0.26 12.3 0.2 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|313127172|ref|YP_004037442.1| - 0.19 11.4 0.0 0.46 10.2 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Putative_PNPOx PF01243.20 gi|313127173|ref|YP_004037443.1| - 7.2e-18 64.6 0.0 9.4e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|313127173|ref|YP_004037443.1| - 3.4e-06 27.1 0.1 3.7e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|313127173|ref|YP_004037443.1| - 0.00036 20.2 0.0 0.00039 20.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like F420H2_quin_red PF04075.14 gi|313127173|ref|YP_004037443.1| - 0.054 13.6 0.1 0.075 13.2 0.1 1.3 1 0 0 1 1 1 0 F420H(2)-dependent quinone reductase TRAM PF01938.20 gi|313127173|ref|YP_004037443.1| - 0.056 13.4 0.0 0.12 12.3 0.0 1.7 1 1 0 1 1 1 0 TRAM domain HTH_24 PF13412.6 gi|313127174|ref|YP_004037444.1| - 1e-06 28.2 0.0 2.9e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313127174|ref|YP_004037444.1| - 5e-05 23.1 0.1 6.4e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313127174|ref|YP_004037444.1| - 0.00011 22.2 1.0 0.0016 18.4 0.3 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|313127174|ref|YP_004037444.1| - 0.00087 18.9 0.7 0.0016 18.0 0.7 1.6 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|313127174|ref|YP_004037444.1| - 0.0021 17.9 0.9 0.018 15.0 0.2 2.5 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain MarR PF01047.22 gi|313127174|ref|YP_004037444.1| - 0.0048 16.8 0.0 0.0069 16.3 0.0 1.3 1 1 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|313127174|ref|YP_004037444.1| - 0.018 14.9 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|313127174|ref|YP_004037444.1| - 0.038 13.9 0.0 0.24 11.4 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|313127174|ref|YP_004037444.1| - 0.04 13.8 0.1 0.052 13.4 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|313127174|ref|YP_004037444.1| - 0.071 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313127174|ref|YP_004037444.1| - 0.073 12.9 0.3 0.85 9.5 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|313127174|ref|YP_004037444.1| - 0.075 12.8 0.2 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313127174|ref|YP_004037444.1| - 0.084 12.9 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|313127174|ref|YP_004037444.1| - 0.094 13.1 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Lactamase_B PF00753.27 gi|313127175|ref|YP_004037445.1| - 6.8e-13 49.1 7.7 1.3e-12 48.2 7.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|313127175|ref|YP_004037445.1| - 0.00069 19.6 0.2 0.0015 18.5 0.2 1.6 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain RMMBL PF07521.12 gi|313127175|ref|YP_004037445.1| - 0.053 13.5 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain CxxCxxCC PF03692.15 gi|313127176|ref|YP_004037446.1| - 6.6e-14 52.4 0.0 1.4e-13 51.3 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TRAM PF01938.20 gi|313127177|ref|YP_004037447.1| - 3.4e-14 52.6 3.1 3.4e-14 52.6 3.1 2.1 2 1 0 2 2 2 1 TRAM domain Hexapep PF00132.24 gi|313127177|ref|YP_004037447.1| - 0.035 13.8 0.7 0.12 12.2 0.6 1.9 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) NUDIX PF00293.28 gi|313127177|ref|YP_004037447.1| - 0.15 12.1 1.4 2.2 8.3 1.2 2.0 1 1 1 2 2 2 0 NUDIX domain Radical_SAM PF04055.21 gi|313127178|ref|YP_004037448.1| - 1.1e-12 48.6 0.1 3.8e-12 46.9 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|313127178|ref|YP_004037448.1| - 2.5e-05 24.4 0.0 6.6e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|313127178|ref|YP_004037448.1| - 3.2e-05 23.6 0.0 0.00012 21.8 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|313127178|ref|YP_004037448.1| - 0.0034 17.9 0.0 0.011 16.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|313127178|ref|YP_004037448.1| - 0.074 13.0 0.0 0.41 10.7 0.0 2.2 2 0 0 2 2 2 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_8 PF14716.6 gi|313127178|ref|YP_004037448.1| - 0.11 12.9 0.0 0.35 11.3 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|313127178|ref|YP_004037448.1| - 0.12 12.5 0.0 0.43 10.7 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif FG-GAP_2 PF14312.6 gi|313127179|ref|YP_004037449.1| - 2.5e-39 133.3 10.7 3.8e-10 39.9 0.0 7.4 7 0 0 7 7 7 7 FG-GAP repeat HSP20 PF00011.21 gi|313127181|ref|YP_004037451.1| - 4.9e-07 29.8 0.0 1e-06 28.8 0.0 1.6 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|313127181|ref|YP_004037451.1| - 0.028 14.0 0.1 0.067 12.8 0.0 1.6 2 0 0 2 2 2 0 HSP20-like domain found in ArsA DAO PF01266.24 gi|313127182|ref|YP_004037452.1| - 2.6e-53 181.9 9.5 2.9e-53 181.7 9.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313127182|ref|YP_004037452.1| - 8.9e-11 41.6 3.1 0.00017 21.0 0.6 2.2 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313127182|ref|YP_004037452.1| - 4.9e-09 35.8 5.7 7.2e-09 35.2 5.7 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313127182|ref|YP_004037452.1| - 5.7e-07 29.7 1.6 1.9e-06 28.0 1.6 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|313127182|ref|YP_004037452.1| - 1.2e-05 25.7 0.0 3.4e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding HI0933_like PF03486.14 gi|313127182|ref|YP_004037452.1| - 3.1e-05 22.9 1.2 0.00066 18.5 1.2 2.1 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.16 gi|313127182|ref|YP_004037452.1| - 6.2e-05 22.7 0.7 0.00071 19.2 0.3 2.4 2 1 1 3 3 3 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|313127182|ref|YP_004037452.1| - 0.00012 22.6 1.2 0.0028 18.2 1.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|313127182|ref|YP_004037452.1| - 0.00035 20.0 0.9 0.089 12.1 0.2 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|313127182|ref|YP_004037452.1| - 0.00052 19.4 0.1 0.0016 17.8 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|313127182|ref|YP_004037452.1| - 0.00069 19.0 0.8 0.0015 17.8 0.8 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|313127182|ref|YP_004037452.1| - 0.0042 16.4 0.9 0.0075 15.5 0.9 1.3 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.18 gi|313127182|ref|YP_004037452.1| - 0.015 15.2 0.6 0.015 15.2 0.6 1.5 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|313127182|ref|YP_004037452.1| - 0.019 14.1 2.0 0.038 13.1 1.5 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|313127182|ref|YP_004037452.1| - 0.025 13.9 0.0 0.045 13.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|313127182|ref|YP_004037452.1| - 0.037 13.4 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.21 gi|313127182|ref|YP_004037452.1| - 0.053 12.8 2.1 0.094 12.0 2.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|313127182|ref|YP_004037452.1| - 0.061 12.9 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.7 gi|313127182|ref|YP_004037452.1| - 0.099 12.0 5.3 0.15 11.3 5.3 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase IlvN PF07991.12 gi|313127182|ref|YP_004037452.1| - 0.15 11.6 0.3 0.3 10.6 0.3 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_9 PF13454.6 gi|313127182|ref|YP_004037452.1| - 0.25 11.3 2.5 2 8.4 0.1 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Bac_luciferase PF00296.20 gi|313127183|ref|YP_004037453.1| - 0.0032 17.0 4.1 0.0033 16.9 3.3 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase PrpR_N PF06506.11 gi|313127183|ref|YP_004037453.1| - 0.016 14.8 0.0 0.078 12.5 0.0 2.0 3 0 0 3 3 3 0 Propionate catabolism activator NUDIX PF00293.28 gi|313127184|ref|YP_004037454.1| - 4e-16 59.2 0.1 5.5e-16 58.8 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain FANC_SAP PF18081.1 gi|313127185|ref|YP_004037455.1| - 0.0096 16.1 0.5 0.027 14.6 0.5 1.8 1 0 0 1 1 1 1 Fanconi anemia-associated nuclease SAP domain MFS_1 PF07690.16 gi|313127187|ref|YP_004037457.1| - 1.8e-44 152.2 57.5 6e-36 124.1 37.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|313127187|ref|YP_004037457.1| - 7.9e-09 34.8 16.1 2.8e-08 33.0 8.9 2.1 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|313127187|ref|YP_004037457.1| - 9.6e-05 21.8 33.3 9.6e-05 21.8 33.3 1.3 2 0 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB DZR PF12773.7 gi|313127188|ref|YP_004037458.1| - 0.00079 19.4 0.3 0.001 19.1 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|313127188|ref|YP_004037458.1| - 0.0086 16.0 2.2 0.09 12.8 0.3 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon UPF0547 PF10571.9 gi|313127188|ref|YP_004037458.1| - 0.0096 16.0 1.9 0.23 11.6 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 ADK_lid PF05191.14 gi|313127188|ref|YP_004037458.1| - 0.018 15.0 2.5 0.15 12.1 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C3HC4_3 PF13920.6 gi|313127188|ref|YP_004037458.1| - 0.021 14.7 1.4 0.032 14.1 1.4 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.6 gi|313127188|ref|YP_004037458.1| - 0.034 13.5 0.4 6 6.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|313127188|ref|YP_004037458.1| - 0.038 14.0 0.6 0.038 14.0 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|313127188|ref|YP_004037458.1| - 0.038 14.0 1.6 0.095 12.7 1.6 1.6 1 1 0 1 1 1 0 zinc-ribbons Arc_trans_TRASH PF08394.10 gi|313127188|ref|YP_004037458.1| - 0.08 13.3 2.5 2.8 8.4 0.1 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain Prok-RING_1 PF14446.6 gi|313127188|ref|YP_004037458.1| - 0.085 12.8 2.9 0.16 11.9 2.9 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|313127188|ref|YP_004037458.1| - 0.12 12.5 3.3 0.23 11.6 3.3 1.5 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|313127188|ref|YP_004037458.1| - 0.18 11.8 4.2 0.86 9.6 0.2 1.9 1 1 1 2 2 2 0 Nudix N-terminal zf_UBZ PF18439.1 gi|313127188|ref|YP_004037458.1| - 0.21 11.2 1.7 1.2 8.8 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|313127188|ref|YP_004037458.1| - 0.92 9.6 5.5 1.1 9.4 0.3 2.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Aldo_ket_red PF00248.21 gi|313127189|ref|YP_004037459.1| - 2.5e-29 102.4 0.0 3.6e-23 82.2 0.0 2.4 1 1 1 2 2 2 2 Aldo/keto reductase family DHH PF01368.20 gi|313127190|ref|YP_004037460.1| - 2.2e-10 40.7 0.1 3.4e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|313127190|ref|YP_004037460.1| - 4.5e-08 33.6 0.2 8.4e-08 32.7 0.2 1.3 1 0 0 1 1 1 1 DHHA1 domain NAD_binding_10 PF13460.6 gi|313127191|ref|YP_004037461.1| - 1.1e-12 48.2 0.1 1.5e-12 47.7 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|313127191|ref|YP_004037461.1| - 1.1e-11 44.6 0.0 2.2e-11 43.7 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 gi|313127191|ref|YP_004037461.1| - 8.9e-06 26.0 0.1 2.2e-05 24.7 0.0 1.7 2 0 0 2 2 2 1 TrkA-N domain 3Beta_HSD PF01073.19 gi|313127191|ref|YP_004037461.1| - 4.6e-05 22.6 0.0 0.00011 21.3 0.0 1.6 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family ApbA PF02558.16 gi|313127191|ref|YP_004037461.1| - 0.00023 20.9 0.0 0.00049 19.8 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DUF1731 PF08338.11 gi|313127191|ref|YP_004037461.1| - 0.00025 20.8 0.0 0.00062 19.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) Pyr_redox PF00070.27 gi|313127191|ref|YP_004037461.1| - 0.00054 20.5 0.2 0.0013 19.2 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|313127191|ref|YP_004037461.1| - 0.00065 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RmlD_sub_bind PF04321.17 gi|313127191|ref|YP_004037461.1| - 0.01 15.0 0.0 0.031 13.4 0.0 1.7 1 1 0 1 1 1 0 RmlD substrate binding domain Pyr_redox_2 PF07992.14 gi|313127191|ref|YP_004037461.1| - 0.021 14.1 0.1 0.036 13.3 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GDP_Man_Dehyd PF16363.5 gi|313127191|ref|YP_004037461.1| - 0.042 13.3 0.0 4.5 6.6 0.0 2.1 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase Sacchrp_dh_NADP PF03435.18 gi|313127191|ref|YP_004037461.1| - 0.052 13.8 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|313127191|ref|YP_004037461.1| - 0.077 13.6 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF2231 PF09990.9 gi|313127197|ref|YP_004037467.1| - 0.018 15.5 5.0 0.051 14.0 5.0 1.8 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) T2SSF PF00482.23 gi|313127197|ref|YP_004037467.1| - 0.078 12.9 4.8 0.49 10.4 1.8 3.1 2 2 0 2 2 2 0 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|313127198|ref|YP_004037468.1| - 4.4e-36 124.4 0.0 6.3e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|313127198|ref|YP_004037468.1| - 0.014 15.7 0.9 0.043 14.2 0.1 2.2 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|313127198|ref|YP_004037468.1| - 0.046 14.2 0.0 0.091 13.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|313127198|ref|YP_004037468.1| - 0.17 11.7 0.1 0.38 10.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MutS_III PF05192.18 gi|313127200|ref|YP_004037470.1| - 0.012 15.9 2.4 0.014 15.7 2.4 1.1 1 0 0 1 1 1 0 MutS domain III DUF3209 PF11483.8 gi|313127200|ref|YP_004037470.1| - 0.028 14.9 2.5 0.049 14.1 2.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3209) NPV_P10 PF05531.12 gi|313127200|ref|YP_004037470.1| - 0.028 14.9 0.5 0.43 11.1 0.0 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein SlyX PF04102.12 gi|313127200|ref|YP_004037470.1| - 0.039 14.6 1.5 0.16 12.6 0.3 2.4 1 1 1 2 2 2 0 SlyX CLZ PF16526.5 gi|313127200|ref|YP_004037470.1| - 0.054 13.9 0.5 0.12 12.7 0.1 1.9 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4094 PF13334.6 gi|313127200|ref|YP_004037470.1| - 0.061 13.7 0.2 0.098 13.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) ABC_tran_CTD PF16326.5 gi|313127200|ref|YP_004037470.1| - 0.092 13.0 2.9 0.88 9.9 0.6 2.6 1 1 0 2 2 2 0 ABC transporter C-terminal domain Prominin PF05478.11 gi|313127200|ref|YP_004037470.1| - 0.16 9.9 0.1 0.2 9.6 0.1 1.0 1 0 0 1 1 1 0 Prominin BLOC1_2 PF10046.9 gi|313127200|ref|YP_004037470.1| - 0.34 11.3 1.8 0.82 10.0 0.2 2.2 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4407 PF14362.6 gi|313127200|ref|YP_004037470.1| - 2.9 7.2 8.3 3.7 6.8 8.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FUSC PF04632.12 gi|313127200|ref|YP_004037470.1| - 3.9 5.9 9.4 4.7 5.6 9.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Tubulin PF00091.25 gi|313127201|ref|YP_004037471.1| - 3.5e-25 89.3 0.0 9.9e-25 87.9 0.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|313127201|ref|YP_004037471.1| - 9.1e-05 21.8 0.2 0.0002 20.7 0.2 1.5 1 1 0 1 1 1 1 Tubulin like HEM4 PF02602.15 gi|313127201|ref|YP_004037471.1| - 0.043 13.2 0.2 0.072 12.4 0.2 1.3 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Phosphodiest PF01663.22 gi|313127202|ref|YP_004037472.1| - 1.7e-59 202.2 0.1 1.9e-59 202.0 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|313127202|ref|YP_004037472.1| - 0.031 13.6 0.0 0.17 11.3 0.0 2.0 2 0 0 2 2 2 0 Metalloenzyme superfamily DUF2063 PF09836.9 gi|313127202|ref|YP_004037472.1| - 0.14 12.4 0.2 0.29 11.4 0.2 1.5 1 0 0 1 1 1 0 Putative DNA-binding domain Sulfatase PF00884.23 gi|313127202|ref|YP_004037472.1| - 0.96 8.8 4.2 0.91 8.8 1.2 2.3 2 2 0 2 2 2 0 Sulfatase FAM104 PF15434.6 gi|313127203|ref|YP_004037473.1| - 0.036 14.6 1.0 0.056 14.0 0.6 1.5 1 1 0 1 1 1 0 Family 104 SNN_linker PF09050.10 gi|313127203|ref|YP_004037473.1| - 2.6 7.9 7.0 0.58 10.0 1.0 2.4 2 0 0 2 2 2 0 Stannin unstructured linker DNA_pol_B_thumb PF14791.6 gi|313127204|ref|YP_004037474.1| - 4.7e-24 84.3 0.0 1.5e-23 82.7 0.0 2.0 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|313127204|ref|YP_004037474.1| - 3.3e-21 75.4 2.6 4.2e-16 59.1 0.1 3.5 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|313127204|ref|YP_004037474.1| - 6.6e-15 55.5 3.1 8.1e-13 48.8 0.1 3.2 3 0 0 3 3 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|313127204|ref|YP_004037474.1| - 1.3e-07 31.6 0.4 0.0049 16.9 0.1 3.3 2 1 0 2 2 2 2 Helix-hairpin-helix motif PHP PF02811.19 gi|313127204|ref|YP_004037474.1| - 4.8e-07 30.2 0.0 1e-06 29.1 0.0 1.6 1 1 0 1 1 1 1 PHP domain DNA_pol_lambd_f PF10391.9 gi|313127204|ref|YP_004037474.1| - 2.3e-05 24.1 0.0 0.00013 21.7 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.6 gi|313127204|ref|YP_004037474.1| - 0.00015 21.9 0.1 0.0014 18.8 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.23 gi|313127204|ref|YP_004037474.1| - 0.0006 19.6 0.5 0.027 14.4 0.1 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|313127204|ref|YP_004037474.1| - 0.0098 16.1 0.1 47 4.3 0.0 3.5 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF3363 PF11843.8 gi|313127204|ref|YP_004037474.1| - 0.058 12.3 0.1 0.6 9.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3363) IMS_HHH PF11798.8 gi|313127204|ref|YP_004037474.1| - 0.063 13.6 0.1 11 6.5 0.0 2.9 2 0 0 2 2 2 0 IMS family HHH motif 5_3_exonuc PF01367.20 gi|313127204|ref|YP_004037474.1| - 0.15 12.7 1.3 33 5.2 0.1 3.1 2 1 1 3 3 2 0 5'-3' exonuclease, C-terminal SAM fold Mut7-C PF01927.16 gi|313127205|ref|YP_004037475.1| - 2.6e-41 141.1 0.0 3e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|313127205|ref|YP_004037475.1| - 1.9e-05 24.3 0.0 3.2e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) RNA_pol_N PF01194.17 gi|313127205|ref|YP_004037475.1| - 0.03 14.6 1.0 6 7.2 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit Glyco_tranf_2_4 PF13704.6 gi|313127205|ref|YP_004037475.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 zf-UBP PF02148.19 gi|313127205|ref|YP_004037475.1| - 0.12 12.7 0.3 0.2 12.0 0.3 1.3 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Virul_fac_BrkB PF03631.15 gi|313127206|ref|YP_004037476.1| - 9.9e-06 25.3 3.2 9.9e-06 25.3 3.2 1.7 2 0 0 2 2 2 1 Virulence factor BrkB Apt1 PF10351.9 gi|313127206|ref|YP_004037476.1| - 0.075 11.9 3.3 0.091 11.6 3.3 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain HCV_NS4a PF01006.20 gi|313127206|ref|YP_004037476.1| - 0.1 12.4 0.4 0.1 12.4 0.4 2.6 2 1 1 3 3 3 0 Hepatitis C virus non-structural protein NS4a CPBP PF02517.16 gi|313127208|ref|YP_004037478.1| - 2e-06 28.1 0.2 3.9e-06 27.2 0.2 1.7 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF302 PF03625.14 gi|313127209|ref|YP_004037479.1| - 1e-15 57.3 0.0 1.6e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 HTH_10 PF04967.12 gi|313127210|ref|YP_004037480.1| - 1.3e-17 63.3 0.0 2e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313127210|ref|YP_004037480.1| - 1.1e-12 48.1 0.4 1.8e-12 47.4 0.4 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|313127210|ref|YP_004037480.1| - 0.00065 19.2 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313127210|ref|YP_004037480.1| - 0.0023 17.8 0.1 0.0079 16.1 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|313127210|ref|YP_004037480.1| - 0.0036 17.1 0.4 0.0087 15.9 0.2 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313127210|ref|YP_004037480.1| - 0.042 13.4 0.1 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|313127210|ref|YP_004037480.1| - 0.08 12.6 0.2 0.17 11.6 0.1 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|313127211|ref|YP_004037481.1| - 0.0006 19.8 0.5 0.015 15.3 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain DUF4777 PF16007.5 gi|313127211|ref|YP_004037481.1| - 0.013 15.7 0.1 0.02 15.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) Nre_N PF04894.12 gi|313127212|ref|YP_004037482.1| - 1.7e-100 336.3 0.0 2.1e-100 336.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|313127212|ref|YP_004037482.1| - 4.5e-36 123.1 0.0 7.8e-36 122.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal TFIIB PF00382.19 gi|313127213|ref|YP_004037483.1| - 5.6e-46 154.5 1.7 8.7e-25 86.6 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|313127213|ref|YP_004037483.1| - 0.0012 18.4 0.1 0.0028 17.1 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|313127213|ref|YP_004037483.1| - 0.047 13.8 0.0 0.34 11.0 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain HARE-HTH PF05066.13 gi|313127213|ref|YP_004037483.1| - 0.053 13.9 0.0 1.5 9.3 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Sigma70_r4 PF04545.16 gi|313127213|ref|YP_004037483.1| - 0.38 10.3 0.1 0.38 10.3 0.1 3.5 4 1 1 5 5 5 0 Sigma-70, region 4 RVT_3 PF13456.6 gi|313127214|ref|YP_004037484.1| - 5.1e-28 97.4 0.0 1.2e-27 96.2 0.0 1.6 2 0 0 2 2 2 1 Reverse transcriptase-like RNase_H PF00075.24 gi|313127214|ref|YP_004037484.1| - 4.3e-13 49.7 0.0 1e-12 48.4 0.0 1.6 1 1 0 1 1 1 1 RNase H Mac PF12464.8 gi|313127214|ref|YP_004037484.1| - 0.02 15.1 0.2 0.043 14.0 0.2 1.6 1 0 0 1 1 1 0 Maltose acetyltransferase PadR PF03551.14 gi|313127216|ref|YP_004037486.1| - 1.9e-17 63.0 0.4 2.6e-17 62.5 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|313127216|ref|YP_004037486.1| - 4.1e-05 24.0 0.0 6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|313127216|ref|YP_004037486.1| - 0.0035 17.3 0.1 0.0053 16.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix FUR PF01475.19 gi|313127216|ref|YP_004037486.1| - 0.015 15.5 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF4364 PF14277.6 gi|313127216|ref|YP_004037486.1| - 0.02 14.6 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) RTP PF02334.16 gi|313127216|ref|YP_004037486.1| - 0.052 14.2 0.1 0.074 13.7 0.1 1.3 1 0 0 1 1 1 0 Replication terminator protein HTH_34 PF13601.6 gi|313127216|ref|YP_004037486.1| - 0.092 12.9 0.1 0.21 11.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|313127216|ref|YP_004037486.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Pyrophosphatase PF00719.19 gi|313127217|ref|YP_004037487.1| - 5.3e-50 169.3 1.3 6.1e-50 169.2 1.3 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Rhomboid PF01694.22 gi|313127219|ref|YP_004037489.1| - 8.9e-29 100.4 13.4 8.9e-29 100.4 13.4 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|313127219|ref|YP_004037489.1| - 2e-12 47.1 9.5 2.8e-12 46.6 9.5 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|313127219|ref|YP_004037489.1| - 0.0088 16.6 1.2 0.021 15.4 0.7 1.9 1 1 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.21 gi|313127219|ref|YP_004037489.1| - 0.055 13.6 1.9 0.083 13.0 1.9 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.16 gi|313127219|ref|YP_004037489.1| - 0.52 10.2 4.6 0.84 9.6 4.6 1.3 1 0 0 1 1 1 0 HIT zinc finger zf_UBZ PF18439.1 gi|313127219|ref|YP_004037489.1| - 1.8 8.3 5.3 15 5.3 0.8 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Endonuclease_5 PF04493.14 gi|313127220|ref|YP_004037490.1| - 1.1e-53 181.9 0.0 1.3e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V adh_short PF00106.25 gi|313127221|ref|YP_004037491.1| - 2.1e-49 167.7 0.0 2.5e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313127221|ref|YP_004037491.1| - 1.3e-38 132.9 0.0 1.8e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|313127221|ref|YP_004037491.1| - 4.2e-13 49.6 0.0 7e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313127221|ref|YP_004037491.1| - 5.8e-06 25.9 0.0 1.2e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|313127221|ref|YP_004037491.1| - 8.2e-06 25.4 0.0 1.1e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NAD_binding_10 PF13460.6 gi|313127221|ref|YP_004037491.1| - 1.7e-05 24.8 0.0 3.3e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|313127221|ref|YP_004037491.1| - 0.00017 20.8 0.0 0.00026 20.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.8 gi|313127221|ref|YP_004037491.1| - 0.022 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ArsA_ATPase PF02374.15 gi|313127222|ref|YP_004037492.1| - 1.4e-78 264.2 0.0 1.9e-53 181.7 0.0 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|313127222|ref|YP_004037492.1| - 1.1e-07 32.0 0.0 1.9e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|313127222|ref|YP_004037492.1| - 2e-06 27.9 0.0 9.8e-06 25.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|313127222|ref|YP_004037492.1| - 0.00032 20.2 1.4 0.0028 17.2 0.0 2.5 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 gi|313127222|ref|YP_004037492.1| - 0.0032 16.9 0.0 0.0058 16.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_25 PF13481.6 gi|313127222|ref|YP_004037492.1| - 0.0038 16.8 1.2 0.037 13.6 0.1 2.8 3 0 0 3 3 3 1 AAA domain SRP54 PF00448.22 gi|313127222|ref|YP_004037492.1| - 0.013 15.1 0.3 0.8 9.3 0.5 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|313127222|ref|YP_004037492.1| - 0.028 13.7 0.1 0.065 12.5 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin Fer4_NifH PF00142.18 gi|313127222|ref|YP_004037492.1| - 0.054 12.9 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NPF PF16601.5 gi|313127222|ref|YP_004037492.1| - 0.07 13.6 1.7 0.13 12.7 1.7 1.4 1 0 0 1 1 1 0 Rabosyn-5 repeating NPF sequence-motif CBP_BcsQ PF06564.12 gi|313127222|ref|YP_004037492.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ CinA PF02464.17 gi|313127223|ref|YP_004037493.1| - 7.5e-60 201.0 0.1 8.5e-60 200.8 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein YdjM PF04307.14 gi|313127224|ref|YP_004037494.1| - 8.6e-12 44.7 4.4 1.2e-10 41.0 4.4 2.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|313127224|ref|YP_004037494.1| - 0.027 14.5 0.2 0.058 13.4 0.2 1.4 1 1 0 1 1 1 0 Zinc dependent phospholipase C PHP_C PF13263.6 gi|313127226|ref|YP_004037496.1| - 3.8e-17 61.8 0.0 7.5e-17 60.8 0.0 1.5 1 0 0 1 1 1 1 PHP-associated FYVE PF01363.21 gi|313127227|ref|YP_004037497.1| - 0.022 14.9 0.2 0.025 14.7 0.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger Spt5-NGN PF03439.13 gi|313127228|ref|YP_004037498.1| - 4.6e-23 80.9 0.1 7.3e-23 80.3 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|313127228|ref|YP_004037498.1| - 5.1e-08 32.6 1.0 9.5e-08 31.7 0.4 1.8 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|313127228|ref|YP_004037498.1| - 0.031 14.8 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 Transcription termination factor nusG Glyco_hydro_65C PF03633.15 gi|313127228|ref|YP_004037498.1| - 0.047 13.6 0.5 0.098 12.6 0.5 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain SecE PF00584.20 gi|313127229|ref|YP_004037499.1| - 6.1e-05 22.9 0.0 7.6e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Tubulin PF00091.25 gi|313127230|ref|YP_004037500.1| - 5.8e-42 144.1 0.5 8.4e-42 143.6 0.5 1.2 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|313127230|ref|YP_004037500.1| - 2.5e-36 123.9 2.8 3.8e-36 123.3 1.3 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|313127230|ref|YP_004037500.1| - 0.0093 15.2 7.9 0.037 13.2 2.2 2.6 1 1 1 2 2 2 2 Tubulin like NAD_binding_10 PF13460.6 gi|313127230|ref|YP_004037500.1| - 0.01 15.7 2.3 0.022 14.6 0.1 2.4 3 0 0 3 3 3 0 NAD(P)H-binding tRNA_deacylase PF04414.12 gi|313127231|ref|YP_004037501.1| - 4.7e-62 209.2 0.0 6.5e-62 208.7 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Halo_GVPC PF05465.13 gi|313127231|ref|YP_004037501.1| - 1 9.7 7.1 0.088 13.1 1.6 2.2 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat Na_Ca_ex PF01699.24 gi|313127232|ref|YP_004037502.1| - 1.4e-22 80.3 22.3 7.9e-12 45.4 6.0 2.8 3 1 0 3 3 3 2 Sodium/calcium exchanger protein Na_Ca_ex PF01699.24 gi|313127233|ref|YP_004037503.1| - 2.2e-45 154.3 37.8 5.7e-24 84.8 13.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.11 gi|313127234|ref|YP_004037504.1| - 9.9e-28 96.2 0.0 2.2e-27 95.1 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|313127234|ref|YP_004037504.1| - 4e-13 48.9 0.7 8.7e-13 47.8 0.7 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|313127234|ref|YP_004037504.1| - 8.1e-09 35.7 0.1 1.4e-08 34.9 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 gi|313127234|ref|YP_004037504.1| - 0.0016 17.6 4.7 0.0016 17.6 4.7 1.5 2 0 0 2 2 2 1 FAD binding domain THF_DHG_CYH_C PF02882.19 gi|313127234|ref|YP_004037504.1| - 0.0028 17.0 0.1 0.018 14.3 0.1 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.14 gi|313127234|ref|YP_004037504.1| - 0.0085 15.3 1.3 0.013 14.7 1.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|313127234|ref|YP_004037504.1| - 0.0087 16.3 0.4 0.019 15.2 0.4 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|313127234|ref|YP_004037504.1| - 0.01 15.1 0.1 0.015 14.6 0.1 1.3 1 0 0 1 1 1 0 Thi4 family IlvN PF07991.12 gi|313127234|ref|YP_004037504.1| - 0.014 15.0 0.2 0.024 14.2 0.2 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_3 PF13738.6 gi|313127234|ref|YP_004037504.1| - 0.019 14.3 0.1 0.027 13.7 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|313127234|ref|YP_004037504.1| - 0.019 14.1 2.2 0.024 13.7 2.2 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A adh_short PF00106.25 gi|313127234|ref|YP_004037504.1| - 0.024 14.1 1.4 0.044 13.2 1.4 1.5 1 1 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|313127234|ref|YP_004037504.1| - 0.042 13.5 0.4 0.068 12.8 0.4 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|313127234|ref|YP_004037504.1| - 0.056 13.9 0.2 0.11 13.0 0.2 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|313127234|ref|YP_004037504.1| - 0.078 13.1 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|313127234|ref|YP_004037504.1| - 0.079 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|313127234|ref|YP_004037504.1| - 0.21 10.2 1.7 0.28 9.8 1.7 1.1 1 0 0 1 1 1 0 HI0933-like protein HHH_5 PF14520.6 gi|313127235|ref|YP_004037505.1| - 1.3e-10 41.8 0.4 2.5e-10 40.8 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|313127235|ref|YP_004037505.1| - 0.00023 21.4 0.0 0.0008 19.6 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|313127235|ref|YP_004037505.1| - 0.00073 19.7 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|313127235|ref|YP_004037505.1| - 0.002 17.9 0.0 0.0036 17.1 0.0 1.4 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HTH_Tnp_ISL3 PF13542.6 gi|313127235|ref|YP_004037505.1| - 0.074 12.5 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TfoX_C PF04994.13 gi|313127235|ref|YP_004037505.1| - 0.17 12.0 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 TfoX C-terminal domain Chorismate_bind PF00425.18 gi|313127236|ref|YP_004037506.1| - 3.3e-101 338.2 0.0 4.4e-101 337.8 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|313127236|ref|YP_004037506.1| - 6e-14 52.4 0.0 1.1e-13 51.5 0.0 1.4 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|313127237|ref|YP_004037507.1| - 2.7e-45 154.5 0.0 3e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313127237|ref|YP_004037507.1| - 6.7e-07 29.3 0.1 2.6e-06 27.4 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.19 gi|313127238|ref|YP_004037508.1| - 2e-55 188.1 0.0 2.4e-55 187.8 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Rieske PF00355.26 gi|313127239|ref|YP_004037509.1| - 3.4e-09 36.5 0.0 4.4e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|313127239|ref|YP_004037509.1| - 0.079 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain DUF2318 PF10080.9 gi|313127239|ref|YP_004037509.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) GtrA PF04138.14 gi|313127240|ref|YP_004037510.1| - 6.9e-15 55.3 8.7 9.7e-15 54.8 8.7 1.2 1 0 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.26 gi|313127241|ref|YP_004037511.1| - 7.7e-07 29.1 0.1 1.9e-06 27.8 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF2298 PF10060.9 gi|313127242|ref|YP_004037512.1| - 1e-142 476.4 36.2 1.4e-142 476.0 36.2 1.2 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Ribosomal_L44 PF00935.19 gi|313127245|ref|YP_004037515.1| - 8.7e-24 83.8 2.0 1e-23 83.6 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|313127245|ref|YP_004037515.1| - 0.0099 15.3 1.2 3.7 7.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|313127245|ref|YP_004037515.1| - 0.04 13.4 0.9 6.9 6.3 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|313127245|ref|YP_004037515.1| - 0.21 11.3 4.8 2.3 8.0 1.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|313127245|ref|YP_004037515.1| - 0.31 11.2 2.7 16 5.7 0.1 2.5 2 1 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|313127245|ref|YP_004037515.1| - 0.32 10.9 3.6 6.2 6.8 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-B_box PF00643.24 gi|313127245|ref|YP_004037515.1| - 0.43 10.8 7.3 4.9 7.4 2.3 2.1 2 0 0 2 2 2 0 B-box zinc finger zf-Mss51 PF13824.6 gi|313127245|ref|YP_004037515.1| - 0.43 10.7 5.6 0.98 9.6 5.7 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_S27e PF01667.17 gi|313127246|ref|YP_004037516.1| - 2.4e-19 68.8 0.6 2.6e-19 68.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|313127246|ref|YP_004037516.1| - 0.022 14.8 0.3 0.041 14.0 0.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|313127246|ref|YP_004037516.1| - 0.043 13.5 0.9 0.06 13.1 0.9 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain MRNIP PF15749.5 gi|313127246|ref|YP_004037516.1| - 0.12 13.1 0.5 0.15 12.8 0.5 1.1 1 0 0 1 1 1 0 MRN-interacting protein eIF-5_eIF-2B PF01873.17 gi|313127246|ref|YP_004037516.1| - 0.15 12.0 1.4 0.19 11.6 1.4 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 EIF_2_alpha PF07541.12 gi|313127247|ref|YP_004037517.1| - 1.5e-26 92.8 0.1 2.7e-26 91.9 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|313127247|ref|YP_004037517.1| - 8.8e-13 48.4 0.9 8.8e-13 48.4 0.9 1.8 2 0 0 2 2 2 1 S1 RNA binding domain DUF1494 PF07379.11 gi|313127247|ref|YP_004037517.1| - 0.086 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1494) Nop10p PF04135.12 gi|313127248|ref|YP_004037518.1| - 1.7e-24 85.6 0.2 1.9e-24 85.5 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Zn-ribbon_8 PF09723.10 gi|313127248|ref|YP_004037518.1| - 0.03 14.4 0.1 0.046 13.8 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain PAC2 PF09754.9 gi|313127249|ref|YP_004037519.1| - 1.2e-53 182.3 0.2 1.4e-53 182.1 0.2 1.0 1 0 0 1 1 1 1 PAC2 family HTH_5 PF01022.20 gi|313127250|ref|YP_004037520.1| - 0.0018 18.1 1.4 0.17 11.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313127250|ref|YP_004037520.1| - 0.0024 17.9 0.4 0.0044 17.0 0.4 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain PhzC-PhzF PF02567.16 gi|313127251|ref|YP_004037521.1| - 4e-63 213.5 0.1 4.6e-63 213.3 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|313127251|ref|YP_004037521.1| - 0.0073 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Proline racemase DAP_epimerase PF01678.19 gi|313127251|ref|YP_004037521.1| - 0.015 15.4 0.1 0.051 13.8 0.1 1.9 2 0 0 2 2 2 0 Diaminopimelate epimerase Desulfoferrod_N PF06397.12 gi|313127252|ref|YP_004037522.1| - 0.00012 21.6 0.8 0.11 12.2 0.0 2.1 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|313127252|ref|YP_004037522.1| - 0.0014 18.7 0.6 0.0018 18.3 0.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|313127252|ref|YP_004037522.1| - 0.0016 17.8 0.7 0.04 13.3 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|313127252|ref|YP_004037522.1| - 0.11 12.8 3.1 2.3 8.5 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|313127252|ref|YP_004037522.1| - 0.12 12.3 1.7 0.39 10.7 1.7 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|313127252|ref|YP_004037522.1| - 0.37 10.5 3.7 1.3 8.8 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Pribosyltran PF00156.27 gi|313127253|ref|YP_004037523.1| - 4.9e-16 58.7 0.0 6.9e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|313127253|ref|YP_004037523.1| - 0.0092 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HD_3 PF13023.6 gi|313127254|ref|YP_004037524.1| - 9.6e-27 93.9 0.0 1.2e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|313127254|ref|YP_004037524.1| - 6.3e-13 48.9 0.0 1.1e-12 48.1 0.0 1.4 2 0 0 2 2 2 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|313127254|ref|YP_004037524.1| - 1.2e-07 32.0 0.0 2.3e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|313127254|ref|YP_004037524.1| - 0.12 11.8 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 HDOD domain Mem_trans PF03547.18 gi|313127255|ref|YP_004037525.1| - 5.1e-24 84.4 23.7 7.2e-14 51.0 2.1 2.0 1 1 0 2 2 2 2 Membrane transport protein PNP_UDP_1 PF01048.20 gi|313127256|ref|YP_004037526.1| - 3.6e-44 150.8 0.0 4.3e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Peripla_BP_2 PF01497.18 gi|313127257|ref|YP_004037527.1| - 3.1e-14 53.1 0.0 5.2e-14 52.4 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein DUF1924 PF09086.11 gi|313127258|ref|YP_004037528.1| - 0.00087 19.6 2.1 0.016 15.6 0.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1924) SMC_ScpA PF02616.14 gi|313127259|ref|YP_004037529.1| - 1.6e-13 51.1 0.0 1.2e-09 38.4 0.0 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Rnk_N PF14760.6 gi|313127259|ref|YP_004037529.1| - 0.55 10.8 5.6 3.9 8.0 0.2 3.0 2 0 0 2 2 2 0 Rnk N-terminus SMC_N PF02463.19 gi|313127260|ref|YP_004037530.1| - 2.8e-46 157.7 57.4 6.7e-46 156.5 57.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|313127260|ref|YP_004037530.1| - 4.2e-28 98.0 0.0 1.2e-27 96.6 0.0 1.8 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain Spc7 PF08317.11 gi|313127260|ref|YP_004037530.1| - 1.4e-11 43.9 138.0 0.00088 18.2 17.1 8.3 2 2 6 8 8 8 7 Spc7 kinetochore protein AAA_23 PF13476.6 gi|313127260|ref|YP_004037530.1| - 5.6e-11 43.3 23.8 5.6e-11 43.3 23.8 8.4 2 2 2 4 4 2 1 AAA domain CENP-F_leu_zip PF10473.9 gi|313127260|ref|YP_004037530.1| - 1.9e-10 40.9 153.1 2e-05 24.7 16.7 8.9 2 2 7 9 9 8 6 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.6 gi|313127260|ref|YP_004037530.1| - 4.9e-10 38.7 99.1 0.0029 16.4 31.0 6.0 3 2 4 7 7 6 5 AAA domain AAA_21 PF13304.6 gi|313127260|ref|YP_004037530.1| - 7.6e-09 35.8 17.5 7.4e-06 26.0 0.1 5.4 3 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system Atg14 PF10186.9 gi|313127260|ref|YP_004037530.1| - 1.2e-06 27.9 96.2 0.0047 16.1 20.4 5.8 2 2 4 6 6 6 4 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1664 PF07889.12 gi|313127260|ref|YP_004037530.1| - 1.5e-05 25.0 84.3 0.00082 19.4 6.0 9.6 5 2 6 12 12 11 4 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|313127260|ref|YP_004037530.1| - 2.5e-05 24.3 30.1 0.01 15.8 1.8 7.2 3 2 4 7 7 7 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.6 gi|313127260|ref|YP_004037530.1| - 3.8e-05 23.2 102.3 0.017 14.5 13.2 6.7 2 2 4 6 6 6 5 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|313127260|ref|YP_004037530.1| - 4.1e-05 24.1 124.6 0.058 13.8 13.3 6.6 2 2 4 6 6 6 3 Fez1 AAA_29 PF13555.6 gi|313127260|ref|YP_004037530.1| - 4.2e-05 23.2 0.0 0.0001 22.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4201 PF13870.6 gi|313127260|ref|YP_004037530.1| - 5.5e-05 23.0 101.4 0.0067 16.2 3.3 8.4 3 3 4 8 8 8 5 Domain of unknown function (DUF4201) GAS PF13851.6 gi|313127260|ref|YP_004037530.1| - 6.1e-05 22.5 117.6 0.051 12.9 25.1 7.0 2 2 4 6 6 6 4 Growth-arrest specific micro-tubule binding APG6_N PF17675.1 gi|313127260|ref|YP_004037530.1| - 0.00012 22.6 176.1 0.0047 17.5 23.7 10.0 2 2 7 9 9 8 2 Apg6 coiled-coil region IFT57 PF10498.9 gi|313127260|ref|YP_004037530.1| - 0.00017 20.7 12.2 0.00017 20.7 12.2 5.3 2 2 2 4 4 2 1 Intra-flagellar transport protein 57 Leu_zip PF15294.6 gi|313127260|ref|YP_004037530.1| - 0.00021 20.9 13.9 0.00021 20.9 13.9 6.4 2 2 3 6 6 6 1 Leucine zipper DUF3584 PF12128.8 gi|313127260|ref|YP_004037530.1| - 0.00047 17.9 50.3 0.00047 17.9 50.3 4.7 2 2 1 3 3 3 1 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|313127260|ref|YP_004037530.1| - 0.00049 19.8 70.6 0.085 12.4 10.1 6.2 2 2 2 4 4 3 2 Exonuclease VII, large subunit MscS_porin PF12795.7 gi|313127260|ref|YP_004037530.1| - 0.00091 18.8 17.5 0.00091 18.8 17.5 5.8 2 2 3 5 5 5 2 Mechanosensitive ion channel porin domain DUF812 PF05667.11 gi|313127260|ref|YP_004037530.1| - 0.00097 18.1 26.8 0.00097 18.1 26.8 5.8 2 2 3 5 5 4 2 Protein of unknown function (DUF812) ABC_tran_CTD PF16326.5 gi|313127260|ref|YP_004037530.1| - 0.0012 19.0 27.1 0.0039 17.4 12.4 13.4 4 4 8 12 12 10 5 ABC transporter C-terminal domain ATG16 PF08614.11 gi|313127260|ref|YP_004037530.1| - 0.0018 18.5 17.8 0.0018 18.5 17.8 8.4 2 2 7 9 9 9 3 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.12 gi|313127260|ref|YP_004037530.1| - 0.0019 18.3 18.7 0.0019 18.3 18.7 8.6 2 2 4 7 7 6 3 TPR/MLP1/MLP2-like protein FPP PF05911.11 gi|313127260|ref|YP_004037530.1| - 0.0019 16.5 117.6 0.027 12.7 19.3 5.8 2 2 4 6 6 6 4 Filament-like plant protein, long coiled-coil AAA_15 PF13175.6 gi|313127260|ref|YP_004037530.1| - 0.0021 17.8 18.9 0.0021 17.8 18.9 5.0 2 2 2 4 4 3 1 AAA ATPase domain DUF3450 PF11932.8 gi|313127260|ref|YP_004037530.1| - 0.0022 17.4 4.8 0.0022 17.4 4.8 9.3 2 2 8 10 10 9 4 Protein of unknown function (DUF3450) Fib_alpha PF08702.10 gi|313127260|ref|YP_004037530.1| - 0.0026 18.0 8.9 0.0026 18.0 8.9 7.2 2 2 4 8 8 7 2 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|313127260|ref|YP_004037530.1| - 0.0048 16.9 82.3 0.029 14.4 4.8 9.0 3 2 5 10 10 10 5 Laminin Domain II TMPIT PF07851.13 gi|313127260|ref|YP_004037530.1| - 0.0053 16.0 76.2 0.11 11.8 5.6 6.9 2 2 4 7 7 7 4 TMPIT-like protein HMMR_N PF15905.5 gi|313127260|ref|YP_004037530.1| - 0.0061 16.1 123.3 0.012 15.1 24.1 4.7 2 2 1 4 4 4 2 Hyaluronan mediated motility receptor N-terminal FliJ PF02050.16 gi|313127260|ref|YP_004037530.1| - 0.0082 16.4 6.2 0.0082 16.4 6.2 8.5 4 2 4 9 9 9 4 Flagellar FliJ protein Seryl_tRNA_N PF02403.22 gi|313127260|ref|YP_004037530.1| - 0.011 15.9 122.8 0.013 15.8 6.7 10.3 2 2 8 11 11 11 0 Seryl-tRNA synthetase N-terminal domain DUF5082 PF16888.5 gi|313127260|ref|YP_004037530.1| - 0.013 15.7 4.0 0.013 15.7 4.0 10.7 4 3 6 10 10 9 0 Domain of unknown function (DUF5082) Filament PF00038.21 gi|313127260|ref|YP_004037530.1| - 0.036 13.6 129.7 0.13 11.8 54.5 7.0 2 2 3 5 5 5 0 Intermediate filament protein NPV_P10 PF05531.12 gi|313127260|ref|YP_004037530.1| - 0.062 13.8 63.0 0.02 15.3 4.7 10.7 6 3 4 10 10 10 0 Nucleopolyhedrovirus P10 protein MAD PF05557.13 gi|313127260|ref|YP_004037530.1| - 0.12 10.8 127.2 0.011 14.2 13.1 4.3 2 2 2 4 4 4 0 Mitotic checkpoint protein DUF724 PF05266.14 gi|313127260|ref|YP_004037530.1| - 0.14 12.0 112.5 0.012 15.5 10.3 8.3 2 2 5 7 7 6 0 Protein of unknown function (DUF724) AAA_27 PF13514.6 gi|313127260|ref|YP_004037530.1| - 0.15 11.6 0.0 0.15 11.6 0.0 6.2 4 2 2 7 7 6 0 AAA domain DUF4200 PF13863.6 gi|313127260|ref|YP_004037530.1| - 0.59 10.5 141.1 0.049 14.0 12.5 9.7 2 2 7 9 9 9 0 Domain of unknown function (DUF4200) PspA_IM30 PF04012.12 gi|313127260|ref|YP_004037530.1| - 0.91 9.1 119.2 0.38 10.3 6.4 8.5 2 2 5 7 7 7 0 PspA/IM30 family AAA_22 PF13401.6 gi|313127260|ref|YP_004037530.1| - 1.1 9.6 5.8 13 6.1 0.0 4.1 3 1 0 3 3 3 0 AAA domain DUF745 PF05335.13 gi|313127260|ref|YP_004037530.1| - 1.9 8.2 71.5 0.27 11.0 14.9 6.3 3 2 4 7 7 7 0 Protein of unknown function (DUF745) BLOC1_2 PF10046.9 gi|313127260|ref|YP_004037530.1| - 2.4 8.5 87.0 0.67 10.3 5.9 10.6 4 3 8 12 12 12 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliD_N PF02465.18 gi|313127260|ref|YP_004037530.1| - 2.9 8.7 37.4 7.4 7.3 2.0 8.9 4 4 3 7 7 6 0 Flagellar hook-associated protein 2 N-terminus UPF0242 PF06785.11 gi|313127260|ref|YP_004037530.1| - 5.1 7.2 134.3 0.25 11.4 19.8 7.0 2 2 5 7 7 7 0 Uncharacterised protein family (UPF0242) N-terminus DUF2730 PF10805.8 gi|313127260|ref|YP_004037530.1| - 6.9 6.8 71.1 0.47 10.6 1.7 9.7 4 3 6 10 10 10 0 Protein of unknown function (DUF2730) GerPC PF10737.9 gi|313127261|ref|YP_004037531.1| - 0.00027 21.0 0.2 0.00034 20.7 0.2 1.2 1 0 0 1 1 1 1 Spore germination protein GerPC SlyX PF04102.12 gi|313127261|ref|YP_004037531.1| - 0.067 13.8 1.2 0.067 13.8 1.2 2.3 2 0 0 2 2 2 0 SlyX bZIP_1 PF00170.21 gi|313127261|ref|YP_004037531.1| - 0.093 12.8 2.1 0.15 12.1 2.1 1.4 1 0 0 1 1 1 0 bZIP transcription factor FlaC_arch PF05377.11 gi|313127261|ref|YP_004037531.1| - 0.13 12.7 2.6 0.32 11.4 2.6 1.7 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ATP-synt_D PF01813.17 gi|313127261|ref|YP_004037531.1| - 0.48 10.2 3.2 0.27 11.0 0.8 1.6 2 0 0 2 2 2 0 ATP synthase subunit D Striatin PF08232.12 gi|313127261|ref|YP_004037531.1| - 0.75 10.4 13.5 5.5 7.6 13.5 1.9 1 1 0 1 1 1 0 Striatin family ZapB PF06005.12 gi|313127261|ref|YP_004037531.1| - 3.4 8.2 8.6 85 3.7 8.6 2.3 1 1 0 1 1 1 0 Cell division protein ZapB DUF4407 PF14362.6 gi|313127261|ref|YP_004037531.1| - 3.7 6.8 8.4 4.4 6.6 8.4 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DivIC PF04977.15 gi|313127261|ref|YP_004037531.1| - 5.9 6.7 7.4 0.23 11.2 1.2 1.8 2 0 0 2 2 2 0 Septum formation initiator Nop14 PF04147.12 gi|313127261|ref|YP_004037531.1| - 8 4.5 21.0 9.7 4.3 21.0 1.1 1 0 0 1 1 1 0 Nop14-like family Abhydrolase_3 PF07859.13 gi|313127262|ref|YP_004037532.1| - 5.7e-19 68.8 0.8 1.5e-18 67.5 0.8 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|313127262|ref|YP_004037532.1| - 5.4e-10 39.1 0.0 9.4e-08 31.8 0.0 2.4 2 1 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|313127262|ref|YP_004037532.1| - 1.3e-07 31.2 0.2 0.0013 18.1 0.0 2.8 2 1 0 2 2 2 2 Serine aminopeptidase, S33 COesterase PF00135.28 gi|313127262|ref|YP_004037532.1| - 1.5e-07 30.7 0.0 3.8e-07 29.3 0.0 1.5 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_2 PF02230.16 gi|313127262|ref|YP_004037532.1| - 1e-06 28.7 0.0 0.11 12.3 0.0 3.0 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.18 gi|313127262|ref|YP_004037532.1| - 0.0034 17.0 0.0 0.025 14.2 0.0 2.2 2 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|313127262|ref|YP_004037532.1| - 0.053 13.1 0.0 0.95 9.0 0.0 2.4 2 1 0 2 2 2 0 Dienelactone hydrolase family DUF2099 PF09872.9 gi|313127262|ref|YP_004037532.1| - 0.088 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) Esterase_phd PF10503.9 gi|313127262|ref|YP_004037532.1| - 0.2 11.1 6.9 0.62 9.5 3.7 2.7 2 2 1 3 3 3 0 Esterase PHB depolymerase Imm27 PF15590.6 gi|313127262|ref|YP_004037532.1| - 0.21 11.4 0.1 0.44 10.3 0.1 1.5 1 0 0 1 1 1 0 Immunity protein 27 GatB_N PF02934.15 gi|313127263|ref|YP_004037533.1| - 5.2e-100 334.3 0.0 7.9e-100 333.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|313127263|ref|YP_004037533.1| - 2.2e-41 141.2 0.0 4.4e-41 140.2 0.0 1.5 1 0 0 1 1 1 1 GatB domain zf-H2C2_2 PF13465.6 gi|313127264|ref|YP_004037534.1| - 0.0091 16.4 1.2 0.3 11.6 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Nudix_N_2 PF14803.6 gi|313127264|ref|YP_004037534.1| - 0.06 13.3 1.4 6.8 6.7 0.1 2.5 3 0 0 3 3 3 0 Nudix N-terminal DUF35_N PF12172.8 gi|313127264|ref|YP_004037534.1| - 0.067 13.1 2.0 0.24 11.3 0.3 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|313127264|ref|YP_004037534.1| - 0.068 13.3 2.1 0.14 12.3 2.1 1.5 1 1 0 1 1 1 0 Zinc ribbon domain ADK_lid PF05191.14 gi|313127264|ref|YP_004037534.1| - 0.08 12.9 0.1 0.23 11.5 0.1 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid MatE PF01554.18 gi|313127265|ref|YP_004037535.1| - 4.3e-59 198.8 35.8 4.7e-38 130.4 10.1 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|313127265|ref|YP_004037535.1| - 6.6e-09 36.0 5.9 6.6e-09 36.0 5.9 4.6 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Topoisom_bac PF01131.20 gi|313127266|ref|YP_004037536.1| - 8.8e-125 416.9 0.0 1.1e-124 416.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|313127266|ref|YP_004037536.1| - 1.5e-18 66.3 10.3 4.5e-11 42.3 0.1 4.1 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|313127266|ref|YP_004037536.1| - 1.5e-17 63.7 0.0 3e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|313127266|ref|YP_004037536.1| - 5.6e-12 46.1 0.3 2.2e-11 44.2 0.3 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|313127266|ref|YP_004037536.1| - 2.9e-05 23.7 1.8 0.00045 19.9 0.2 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|313127266|ref|YP_004037536.1| - 0.00011 22.0 0.1 0.015 15.1 0.0 3.1 4 0 0 4 4 4 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|313127266|ref|YP_004037536.1| - 0.0013 18.9 0.0 0.0057 16.9 0.0 2.1 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|313127266|ref|YP_004037536.1| - 0.01 16.0 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) IMS_HHH PF11798.8 gi|313127266|ref|YP_004037536.1| - 0.021 15.1 0.1 0.097 13.0 0.1 2.2 2 0 0 2 2 2 0 IMS family HHH motif Toprim_4 PF13662.6 gi|313127266|ref|YP_004037536.1| - 0.059 13.9 0.0 0.18 12.3 0.0 1.9 1 0 0 1 1 1 0 Toprim domain HHH_8 PF14716.6 gi|313127266|ref|YP_004037536.1| - 0.082 13.3 0.3 0.98 9.8 0.3 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain HEXIM PF15313.6 gi|313127266|ref|YP_004037536.1| - 0.089 13.0 0.1 0.24 11.6 0.1 1.7 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein HHH_3 PF12836.7 gi|313127266|ref|YP_004037536.1| - 0.11 12.8 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|313127266|ref|YP_004037536.1| - 0.2 11.8 0.2 1.9 8.7 0.0 2.2 2 1 1 3 3 2 0 Helix-hairpin-helix motif PcrB PF01884.17 gi|313127267|ref|YP_004037537.1| - 2.1e-57 194.2 0.2 2.5e-57 194.0 0.2 1.0 1 0 0 1 1 1 1 PcrB family DUF4013 PF13197.6 gi|313127268|ref|YP_004037538.1| - 1.7e-15 57.3 11.9 3.6e-15 56.2 11.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Arch_flagellin PF01917.16 gi|313127268|ref|YP_004037538.1| - 0.12 12.6 0.4 0.24 11.6 0.4 1.5 1 0 0 1 1 1 0 Archaebacterial flagellin TMEM43 PF07787.12 gi|313127268|ref|YP_004037538.1| - 0.58 9.5 1.0 0.89 8.9 1.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 43 SseC PF04888.12 gi|313127268|ref|YP_004037538.1| - 1.2 8.6 6.6 2 7.9 6.6 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family tRNA-synt_2 PF00152.20 gi|313127269|ref|YP_004037539.1| - 8e-85 284.7 0.0 9.6e-85 284.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|313127269|ref|YP_004037539.1| - 3.6e-14 52.5 0.2 6e-14 51.8 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|313127269|ref|YP_004037539.1| - 0.011 15.2 0.4 0.065 12.7 0.1 2.2 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|313127269|ref|YP_004037539.1| - 0.15 12.2 0.1 0.72 10.0 0.1 2.1 2 0 0 2 2 2 0 Bacterial OB fold (BOF) protein SHOCT PF09851.9 gi|313127270|ref|YP_004037540.1| - 1e-08 34.6 3.9 2e-08 33.7 3.9 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|313127270|ref|YP_004037540.1| - 4.3e-06 26.7 1.9 7.5e-06 25.9 1.9 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|313127270|ref|YP_004037540.1| - 7e-06 26.0 1.1 1e-05 25.4 1.1 1.3 1 0 0 1 1 1 1 Gas vesicle protein G SLATT_1 PF18181.1 gi|313127270|ref|YP_004037540.1| - 0.0082 16.1 0.1 0.015 15.2 0.1 1.4 1 1 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 1 Phage_holin_3_6 PF07332.11 gi|313127270|ref|YP_004037540.1| - 0.0084 16.1 0.1 0.014 15.4 0.1 1.3 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4191 PF13829.6 gi|313127270|ref|YP_004037540.1| - 0.016 14.5 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) VbhA PF18495.1 gi|313127270|ref|YP_004037540.1| - 0.017 15.0 2.8 0.26 11.2 1.6 2.4 2 0 0 2 2 2 0 Antitoxin VbhA CdvA PF18822.1 gi|313127270|ref|YP_004037540.1| - 0.027 14.3 0.2 0.037 13.9 0.2 1.2 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DUF4018 PF13210.6 gi|313127270|ref|YP_004037540.1| - 0.069 12.9 0.0 0.088 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4018) sCache_2 PF17200.4 gi|313127270|ref|YP_004037540.1| - 0.071 13.0 0.8 0.084 12.7 0.1 1.4 2 0 0 2 2 2 0 Single Cache domain 2 GHMP_kinases_N PF00288.26 gi|313127271|ref|YP_004037541.1| - 7.9e-10 38.8 3.3 3.6e-09 36.7 1.4 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain FAD_binding_4 PF01565.23 gi|313127271|ref|YP_004037541.1| - 0.015 15.1 0.2 0.032 14.0 0.2 1.5 1 0 0 1 1 1 0 FAD binding domain GHMP_kinases_C PF08544.13 gi|313127271|ref|YP_004037541.1| - 0.2 12.1 1.6 0.21 11.9 0.0 1.9 2 0 0 2 2 2 0 GHMP kinases C terminal PPS_PS PF02006.16 gi|313127272|ref|YP_004037542.1| - 1.2e-75 252.9 3.5 1.5e-75 252.6 3.5 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Oxidored_molyb PF00174.19 gi|313127273|ref|YP_004037543.1| - 3.5e-27 95.1 0.0 5.5e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Ni_hydr_CYTB PF01292.20 gi|313127273|ref|YP_004037543.1| - 0.0095 15.5 7.9 0.086 12.4 0.5 2.4 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 DUF2632 PF10943.8 gi|313127273|ref|YP_004037543.1| - 0.2 11.2 0.8 0.36 10.4 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2632) GST_N_2 PF13409.6 gi|313127274|ref|YP_004037544.1| - 5.2e-24 84.3 0.1 4.3e-23 81.4 0.0 2.2 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|313127274|ref|YP_004037544.1| - 4.2e-11 42.7 0.2 8.6e-11 41.7 0.2 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|313127274|ref|YP_004037544.1| - 1.7e-08 34.6 0.1 4.1e-08 33.3 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|313127274|ref|YP_004037544.1| - 2.2e-06 27.8 0.0 3.8e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|313127274|ref|YP_004037544.1| - 5.3e-06 26.7 0.0 5.8e-05 23.4 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|313127274|ref|YP_004037544.1| - 0.00048 19.9 0.1 0.00082 19.1 0.1 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain SF-assemblin PF06705.11 gi|313127274|ref|YP_004037544.1| - 0.033 13.5 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 SF-assemblin/beta giardin Baculo_ODV-E27 PF05314.11 gi|313127274|ref|YP_004037544.1| - 0.043 13.0 0.2 3.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Baculovirus occlusion-derived virus envelope protein EC27 Thi4 PF01946.17 gi|313127275|ref|YP_004037545.1| - 2.4e-60 203.7 1.0 8.2e-48 162.7 0.2 2.5 3 0 0 3 3 3 2 Thi4 family NAD_binding_8 PF13450.6 gi|313127275|ref|YP_004037545.1| - 1.5e-09 37.9 0.1 3.8e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|313127275|ref|YP_004037545.1| - 3.5e-09 36.5 0.3 4.9e-09 36.0 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313127275|ref|YP_004037545.1| - 7.5e-09 35.2 1.8 2e-06 27.1 0.2 2.3 1 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|313127275|ref|YP_004037545.1| - 2.2e-08 34.1 2.9 1.9e-05 24.4 0.4 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|313127275|ref|YP_004037545.1| - 3e-08 33.3 0.1 6.4e-08 32.2 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|313127275|ref|YP_004037545.1| - 1.2e-07 31.2 0.1 2e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313127275|ref|YP_004037545.1| - 3.7e-07 29.2 0.0 5.1e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|313127275|ref|YP_004037545.1| - 2.3e-05 24.8 0.2 9.6e-05 22.9 0.2 2.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|313127275|ref|YP_004037545.1| - 4.6e-05 23.5 0.1 0.00011 22.3 0.1 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|313127275|ref|YP_004037545.1| - 8.2e-05 21.6 0.2 0.0088 14.9 0.1 2.2 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|313127275|ref|YP_004037545.1| - 0.00019 20.8 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|313127275|ref|YP_004037545.1| - 0.0013 18.1 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|313127275|ref|YP_004037545.1| - 0.0061 15.7 0.9 0.018 14.1 0.2 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|313127275|ref|YP_004037545.1| - 0.013 14.6 0.2 0.019 14.1 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A TrkA_N PF02254.18 gi|313127275|ref|YP_004037545.1| - 0.021 15.1 0.5 0.054 13.7 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|313127275|ref|YP_004037545.1| - 0.038 14.4 0.1 0.079 13.4 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Methyltransf_11 PF08241.12 gi|313127276|ref|YP_004037546.1| - 4.6e-14 52.8 0.1 7.5e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313127276|ref|YP_004037546.1| - 1.7e-13 51.0 0.0 2.8e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127276|ref|YP_004037546.1| - 7.3e-13 48.6 0.0 7.9e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|313127276|ref|YP_004037546.1| - 9.5e-12 45.1 0.0 1.3e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|313127276|ref|YP_004037546.1| - 1.2e-11 45.2 0.0 1.9e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313127276|ref|YP_004037546.1| - 1.2e-10 41.1 0.0 1.6e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|313127276|ref|YP_004037546.1| - 4e-10 39.8 0.0 5.5e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|313127276|ref|YP_004037546.1| - 1.7e-05 25.0 0.0 2.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|313127276|ref|YP_004037546.1| - 0.00079 18.9 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|313127276|ref|YP_004037546.1| - 0.0013 18.1 0.1 0.0019 17.5 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Fibrillarin PF01269.17 gi|313127276|ref|YP_004037546.1| - 0.0033 16.6 0.0 0.0042 16.2 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|313127276|ref|YP_004037546.1| - 0.0057 16.3 0.0 0.0079 15.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|313127276|ref|YP_004037546.1| - 0.0092 15.7 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|313127276|ref|YP_004037546.1| - 0.0096 15.2 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Pyr_excise PF03013.14 gi|313127276|ref|YP_004037546.1| - 0.021 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase MTS PF05175.14 gi|313127276|ref|YP_004037546.1| - 0.024 14.2 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|313127276|ref|YP_004037546.1| - 0.044 13.8 0.0 0.064 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_19 PF04672.12 gi|313127276|ref|YP_004037546.1| - 0.054 13.0 0.3 0.73 9.3 0.3 2.0 1 1 0 1 1 1 0 S-adenosyl methyltransferase RrnaAD PF00398.20 gi|313127276|ref|YP_004037546.1| - 0.18 10.9 0.0 0.24 10.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase ThiP_synth PF10120.9 gi|313127277|ref|YP_004037547.1| - 3.3e-51 173.2 0.0 4.6e-51 172.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|313127277|ref|YP_004037547.1| - 8.5e-07 28.9 0.1 1.8e-06 27.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|313127277|ref|YP_004037547.1| - 0.00011 21.9 0.3 0.0006 19.5 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_31 PF13560.6 gi|313127277|ref|YP_004037547.1| - 0.00015 22.1 0.2 0.00015 22.1 0.2 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313127277|ref|YP_004037547.1| - 0.00015 21.2 1.2 0.0062 16.0 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|313127277|ref|YP_004037547.1| - 0.00027 20.8 0.0 0.00055 19.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|313127277|ref|YP_004037547.1| - 0.00034 20.6 0.0 0.00065 19.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313127277|ref|YP_004037547.1| - 0.00075 19.3 0.4 0.0049 16.7 0.0 2.6 3 0 0 3 3 2 1 MarR family HTH_26 PF13443.6 gi|313127277|ref|YP_004037547.1| - 0.0011 19.4 0.0 0.0021 18.5 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|313127277|ref|YP_004037547.1| - 0.0014 18.1 0.0 0.0067 16.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|313127277|ref|YP_004037547.1| - 0.0045 16.7 0.0 0.054 13.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain RepB PF07506.11 gi|313127277|ref|YP_004037547.1| - 0.0079 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 RepB plasmid partitioning protein P22_Cro PF14549.6 gi|313127277|ref|YP_004037547.1| - 0.012 15.5 0.2 0.039 13.8 0.0 2.0 3 0 0 3 3 1 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|313127277|ref|YP_004037547.1| - 0.013 15.3 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_50 PF18024.1 gi|313127277|ref|YP_004037547.1| - 0.05 13.2 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313127277|ref|YP_004037547.1| - 0.053 13.2 0.4 0.2 11.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 DUF3486 PF11985.8 gi|313127277|ref|YP_004037547.1| - 0.061 13.7 0.1 0.098 13.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) MarR PF01047.22 gi|313127277|ref|YP_004037547.1| - 0.069 13.1 0.0 18 5.4 0.0 3.1 3 0 0 3 3 3 0 MarR family HNF-1_N PF04814.13 gi|313127277|ref|YP_004037547.1| - 0.074 13.7 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Phage_CII PF05269.11 gi|313127277|ref|YP_004037547.1| - 0.091 13.0 0.0 0.29 11.4 0.0 1.9 1 1 0 1 1 1 0 Bacteriophage CII protein HTH_28 PF13518.6 gi|313127277|ref|YP_004037547.1| - 0.098 12.8 0.1 1 9.5 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_35 PF13693.6 gi|313127277|ref|YP_004037547.1| - 0.12 12.4 0.1 0.77 9.8 0.0 2.4 3 0 0 3 3 2 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|313127277|ref|YP_004037547.1| - 0.13 12.1 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|313127277|ref|YP_004037547.1| - 0.66 9.8 5.6 2.3 8.1 0.0 3.2 4 0 0 4 4 3 0 IclR helix-turn-helix domain DCD PF06559.11 gi|313127278|ref|YP_004037548.1| - 1.1e-16 60.6 0.0 1.3e-11 43.9 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|313127278|ref|YP_004037548.1| - 9.2e-15 54.5 0.0 1.3e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase PTH2 PF01981.16 gi|313127279|ref|YP_004037549.1| - 4.6e-41 139.8 0.0 5.1e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2000 PF09391.10 gi|313127279|ref|YP_004037549.1| - 0.027 14.4 0.1 0.68 9.8 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2000) WEMBL PF05701.11 gi|313127279|ref|YP_004037549.1| - 0.058 12.1 0.0 0.071 11.8 0.0 1.0 1 0 0 1 1 1 0 Weak chloroplast movement under blue light PAS_9 PF13426.7 gi|313127280|ref|YP_004037550.1| - 5.3e-20 71.6 0.4 5.4e-09 36.3 0.1 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|313127280|ref|YP_004037550.1| - 5.2e-17 61.9 1.1 1.5e-09 37.9 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|313127280|ref|YP_004037550.1| - 1.6e-15 57.3 3.3 7.5e-10 39.0 0.1 2.8 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|313127280|ref|YP_004037550.1| - 1.7e-15 57.5 0.0 4.7e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|313127280|ref|YP_004037550.1| - 2.9e-13 49.9 0.1 3.1e-08 33.8 0.1 3.0 2 1 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|313127280|ref|YP_004037550.1| - 2.2e-12 46.8 2.3 4.9e-12 45.7 0.3 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|313127280|ref|YP_004037550.1| - 1.7e-10 40.7 0.7 2.4e-05 24.2 0.1 3.3 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|313127280|ref|YP_004037550.1| - 7.7e-05 22.8 1.3 0.12 12.5 0.0 2.9 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|313127280|ref|YP_004037550.1| - 0.00014 21.8 0.0 0.00039 20.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain TruD PF01142.18 gi|313127281|ref|YP_004037551.1| - 1.2e-163 544.8 0.0 1.4e-163 544.6 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2103 PF09876.9 gi|313127283|ref|YP_004037553.1| - 1.4e-38 130.8 0.1 3.9e-38 129.4 0.1 1.7 2 0 0 2 2 2 1 Predicted metal-binding protein (DUF2103) zf-NADH-PPase PF09297.11 gi|313127283|ref|YP_004037553.1| - 0.76 9.5 3.8 1.6 8.4 3.8 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|313127284|ref|YP_004037554.1| - 6e-22 77.5 0.9 7.1e-22 77.3 0.9 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.13 gi|313127285|ref|YP_004037555.1| - 1.7e-10 40.4 6.8 2e-10 40.1 6.8 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|313127285|ref|YP_004037555.1| - 2.1e-05 23.8 0.2 0.0016 17.8 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|313127285|ref|YP_004037555.1| - 0.00059 19.4 1.5 0.18 11.4 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|313127285|ref|YP_004037555.1| - 0.00075 19.5 0.3 0.00075 19.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|313127285|ref|YP_004037555.1| - 0.0018 17.9 1.0 0.03 14.0 2.1 1.9 1 1 1 2 2 2 2 A2L zinc ribbon domain zf-CHCC PF10276.9 gi|313127285|ref|YP_004037555.1| - 0.0034 17.4 0.5 0.0061 16.6 0.5 1.4 1 0 0 1 1 1 1 Zinc-finger domain Zn_Tnp_IS1595 PF12760.7 gi|313127285|ref|YP_004037555.1| - 0.006 16.5 4.9 0.1 12.6 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|313127285|ref|YP_004037555.1| - 0.0077 16.2 0.7 0.015 15.3 0.7 1.5 1 1 0 1 1 1 1 Double zinc ribbon YacG PF03884.14 gi|313127285|ref|YP_004037555.1| - 0.0077 15.9 0.4 0.37 10.5 0.1 2.0 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG zinc_ribbon_2 PF13240.6 gi|313127285|ref|YP_004037555.1| - 0.0089 15.7 2.3 0.17 11.6 0.3 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|313127285|ref|YP_004037555.1| - 0.017 15.1 0.3 0.02 14.8 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons RNHCP PF12647.7 gi|313127285|ref|YP_004037555.1| - 0.03 14.3 0.3 0.03 14.3 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|313127285|ref|YP_004037555.1| - 0.03 13.9 1.9 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|313127285|ref|YP_004037555.1| - 0.035 14.0 0.8 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG Anti-TRAP PF15777.5 gi|313127285|ref|YP_004037555.1| - 0.039 13.9 0.1 0.046 13.7 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn-ribbon_8 PF09723.10 gi|313127285|ref|YP_004037555.1| - 0.041 14.0 3.8 0.081 13.1 3.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|313127285|ref|YP_004037555.1| - 0.057 13.3 2.1 0.091 12.7 2.1 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|313127285|ref|YP_004037555.1| - 0.061 13.7 0.9 0.32 11.4 0.1 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|313127285|ref|YP_004037555.1| - 0.063 12.8 3.9 0.16 11.5 4.1 1.5 1 1 1 2 2 2 0 TFIIB zinc-binding DUF951 PF06107.11 gi|313127285|ref|YP_004037555.1| - 0.088 12.7 0.3 4 7.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF3268 PF11672.8 gi|313127285|ref|YP_004037555.1| - 0.16 12.3 1.1 0.59 10.5 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain CpXC PF14353.6 gi|313127285|ref|YP_004037555.1| - 0.2 11.7 1.2 0.62 10.1 0.2 1.9 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|313127285|ref|YP_004037555.1| - 0.35 10.8 5.5 13 5.8 5.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|313127285|ref|YP_004037555.1| - 0.7 10.0 1.9 0.88 9.7 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Pcc1 PF09341.10 gi|313127286|ref|YP_004037556.1| - 8.8e-10 38.6 1.3 9.6e-10 38.5 1.3 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 GP40 PF11025.8 gi|313127286|ref|YP_004037556.1| - 0.036 13.8 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 Glycoprotein GP40 of Cryptosporidium Prefoldin_2 PF01920.20 gi|313127287|ref|YP_004037557.1| - 4e-25 87.8 19.4 4.5e-25 87.7 19.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF5082 PF16888.5 gi|313127287|ref|YP_004037557.1| - 0.0004 20.7 8.1 0.00048 20.4 8.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) ALIX_LYPXL_bnd PF13949.6 gi|313127287|ref|YP_004037557.1| - 0.00046 19.6 8.0 0.00056 19.3 8.0 1.0 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV CLZ PF16526.5 gi|313127287|ref|YP_004037557.1| - 0.0015 18.9 3.3 0.0015 18.9 3.3 2.4 2 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Prefoldin PF02996.17 gi|313127287|ref|YP_004037557.1| - 0.0019 18.1 15.5 0.022 14.6 15.5 2.2 1 1 0 1 1 1 1 Prefoldin subunit PspA_IM30 PF04012.12 gi|313127287|ref|YP_004037557.1| - 0.0054 16.3 11.3 0.16 11.5 0.6 2.0 2 0 0 2 2 2 2 PspA/IM30 family TraF_2 PF13729.6 gi|313127287|ref|YP_004037557.1| - 0.0087 15.5 0.2 0.0087 15.5 0.2 2.0 1 1 1 2 2 2 1 F plasmid transfer operon, TraF, protein GIT_CC PF16559.5 gi|313127287|ref|YP_004037557.1| - 0.0089 15.9 2.3 0.0089 15.9 2.3 2.3 2 0 0 2 2 2 1 GIT coiled-coil Rho guanine nucleotide exchange factor Leu_zip PF15294.6 gi|313127287|ref|YP_004037557.1| - 0.014 14.9 10.5 0.017 14.7 10.5 1.0 1 0 0 1 1 1 0 Leucine zipper RasGAP_C PF03836.15 gi|313127287|ref|YP_004037557.1| - 0.014 15.5 5.4 0.58 10.3 0.3 2.1 2 0 0 2 2 2 0 RasGAP C-terminus DUF4988 PF16378.5 gi|313127287|ref|YP_004037557.1| - 0.016 14.9 2.6 0.032 13.9 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function BRE1 PF08647.11 gi|313127287|ref|YP_004037557.1| - 0.021 14.9 9.9 0.042 13.9 1.7 2.3 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase bZIP_1 PF00170.21 gi|313127287|ref|YP_004037557.1| - 0.026 14.6 2.1 0.026 14.6 2.1 2.2 2 0 0 2 2 2 0 bZIP transcription factor DUF724 PF05266.14 gi|313127287|ref|YP_004037557.1| - 0.036 13.9 9.0 0.048 13.5 9.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) XhlA PF10779.9 gi|313127287|ref|YP_004037557.1| - 0.036 14.3 1.0 0.036 14.3 1.0 2.7 2 1 0 2 2 2 0 Haemolysin XhlA FlxA PF14282.6 gi|313127287|ref|YP_004037557.1| - 0.045 13.7 3.2 0.045 13.7 3.2 2.1 2 0 0 2 2 2 0 FlxA-like protein ZapB PF06005.12 gi|313127287|ref|YP_004037557.1| - 0.056 13.9 4.6 0.056 13.9 4.6 2.2 2 0 0 2 2 2 0 Cell division protein ZapB BLOC1_2 PF10046.9 gi|313127287|ref|YP_004037557.1| - 0.063 13.6 11.2 0.055 13.8 1.8 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|313127287|ref|YP_004037557.1| - 0.09 12.7 13.0 0.16 11.9 2.9 2.1 1 1 1 2 2 2 0 Sec34-like family ERM PF00769.19 gi|313127287|ref|YP_004037557.1| - 0.1 12.4 18.8 0.19 11.5 18.8 1.3 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF3450 PF11932.8 gi|313127287|ref|YP_004037557.1| - 0.1 11.9 19.6 0.05 12.9 4.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Lectin_N PF03954.14 gi|313127287|ref|YP_004037557.1| - 0.11 12.3 8.5 0.088 12.6 1.2 2.0 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Sigma70_ner PF04546.13 gi|313127287|ref|YP_004037557.1| - 0.11 12.3 12.6 0.059 13.2 2.0 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region DASH_Dam1 PF08653.10 gi|313127287|ref|YP_004037557.1| - 0.14 12.0 2.9 0.24 11.2 0.3 2.3 2 1 0 2 2 2 0 DASH complex subunit Dam1 DUF4407 PF14362.6 gi|313127287|ref|YP_004037557.1| - 0.15 11.4 9.6 2.6 7.3 9.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Sec8_exocyst PF04048.14 gi|313127287|ref|YP_004037557.1| - 0.15 11.9 8.5 0.26 11.1 1.4 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Hemerythrin PF01814.23 gi|313127287|ref|YP_004037557.1| - 0.17 12.5 4.4 0.25 12.0 4.4 1.2 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain WXG100 PF06013.12 gi|313127287|ref|YP_004037557.1| - 0.19 12.0 10.0 2.5 8.4 1.4 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG ADIP PF11559.8 gi|313127287|ref|YP_004037557.1| - 0.21 11.7 11.2 0.097 12.8 1.8 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|313127287|ref|YP_004037557.1| - 0.22 12.0 10.0 0.55 10.7 2.7 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2379 PF09543.10 gi|313127287|ref|YP_004037557.1| - 0.25 11.6 7.6 0.73 10.0 2.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Laminin_I PF06008.14 gi|313127287|ref|YP_004037557.1| - 0.27 10.9 15.6 1.6 8.4 3.6 2.1 1 1 1 2 2 2 0 Laminin Domain I TACC_C PF05010.14 gi|313127287|ref|YP_004037557.1| - 0.34 10.7 14.5 1.1 9.0 14.5 1.6 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF4164 PF13747.6 gi|313127287|ref|YP_004037557.1| - 0.49 10.7 11.0 0.43 10.9 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF4200 PF13863.6 gi|313127287|ref|YP_004037557.1| - 0.5 10.8 15.7 0.9 9.9 5.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Bap31_Bap29_C PF18035.1 gi|313127287|ref|YP_004037557.1| - 0.61 10.1 13.6 0.15 12.1 0.6 2.3 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF4140 PF13600.6 gi|313127287|ref|YP_004037557.1| - 0.76 10.2 16.7 0.099 13.1 3.5 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) TPR_MLP1_2 PF07926.12 gi|313127287|ref|YP_004037557.1| - 0.88 9.6 20.3 0.53 10.4 3.5 2.1 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein EzrA PF06160.12 gi|313127287|ref|YP_004037557.1| - 1.1 7.4 15.0 1.8 6.7 15.0 1.3 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Laminin_II PF06009.12 gi|313127287|ref|YP_004037557.1| - 1.1 9.3 9.5 2.9 7.9 9.5 1.7 1 1 0 1 1 1 0 Laminin Domain II LUC7 PF03194.15 gi|313127287|ref|YP_004037557.1| - 1.1 8.9 9.1 1.4 8.5 9.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Baculo_PEP_C PF04513.12 gi|313127287|ref|YP_004037557.1| - 1.2 9.2 7.8 4.8 7.2 7.9 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|313127287|ref|YP_004037557.1| - 1.2 9.2 11.9 0.34 11.0 2.6 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.11 gi|313127287|ref|YP_004037557.1| - 1.3 7.9 18.0 1.8 7.4 5.4 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein JIP_LZII PF16471.5 gi|313127287|ref|YP_004037557.1| - 1.3 9.3 14.0 0.55 10.4 5.8 2.6 2 1 0 2 2 2 0 JNK-interacting protein leucine zipper II Exonuc_VII_L PF02601.15 gi|313127287|ref|YP_004037557.1| - 1.3 8.5 5.9 1.8 8.1 5.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Nup54 PF13874.6 gi|313127287|ref|YP_004037557.1| - 1.7 8.8 10.6 11 6.1 10.6 2.0 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF1664 PF07889.12 gi|313127287|ref|YP_004037557.1| - 1.9 8.6 10.8 1.2e+02 2.8 10.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Jnk-SapK_ap_N PF09744.9 gi|313127287|ref|YP_004037557.1| - 2 8.6 20.6 46 4.2 20.6 2.0 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 Prominin PF05478.11 gi|313127287|ref|YP_004037557.1| - 2 6.2 5.9 2.5 5.9 5.9 1.2 1 0 0 1 1 1 0 Prominin FlaC_arch PF05377.11 gi|313127287|ref|YP_004037557.1| - 2.1 8.8 11.3 0.26 11.7 4.4 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DASH_Dad2 PF08654.10 gi|313127287|ref|YP_004037557.1| - 2.3 8.7 9.5 5.2 7.6 0.5 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad2 GCN5L1 PF06320.13 gi|313127287|ref|YP_004037557.1| - 2.4 8.3 11.2 3.5 7.8 2.0 2.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Rho_Binding PF08912.11 gi|313127287|ref|YP_004037557.1| - 2.4 9.0 13.7 1.3 9.9 3.2 2.3 2 0 0 2 2 2 0 Rho Binding Cnn_1N PF07989.11 gi|313127287|ref|YP_004037557.1| - 2.8 8.1 12.5 2.5 8.3 2.1 2.3 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 DHR10 PF18595.1 gi|313127287|ref|YP_004037557.1| - 2.9 8.0 22.1 2.4e+02 1.8 7.7 2.2 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain DUF948 PF06103.11 gi|313127287|ref|YP_004037557.1| - 3.3 8.0 9.1 11 6.4 0.6 2.4 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Spc24 PF08286.11 gi|313127287|ref|YP_004037557.1| - 3.4 7.9 16.9 1.2 9.4 3.7 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 GAS PF13851.6 gi|313127287|ref|YP_004037557.1| - 3.5 6.9 19.0 18 4.6 6.0 2.0 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding FUSC PF04632.12 gi|313127287|ref|YP_004037557.1| - 3.5 6.0 4.9 5.2 5.5 4.9 1.3 1 1 0 1 1 1 0 Fusaric acid resistance protein family IFT57 PF10498.9 gi|313127287|ref|YP_004037557.1| - 3.7 6.4 13.5 1 8.3 3.0 1.9 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 APG6_N PF17675.1 gi|313127287|ref|YP_004037557.1| - 3.8 8.1 25.8 1.1 9.8 8.6 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Snapin_Pallidin PF14712.6 gi|313127287|ref|YP_004037557.1| - 4 7.9 13.4 1.8 9.0 3.9 2.2 2 0 0 2 2 2 0 Snapin/Pallidin DUF16 PF01519.16 gi|313127287|ref|YP_004037557.1| - 4.3 7.9 13.9 24 5.5 13.9 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF4446 PF14584.6 gi|313127287|ref|YP_004037557.1| - 4.5 7.2 10.0 1.2 9.1 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF4795 PF16043.5 gi|313127287|ref|YP_004037557.1| - 4.5 6.8 16.7 54 3.3 16.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Seryl_tRNA_N PF02403.22 gi|313127287|ref|YP_004037557.1| - 4.7 7.5 14.1 2 8.7 2.0 2.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.10 gi|313127287|ref|YP_004037557.1| - 5.1 7.3 10.1 25 5.0 10.2 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family SseC PF04888.12 gi|313127287|ref|YP_004037557.1| - 5.7 6.4 8.9 1.4 8.5 0.7 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Occludin_ELL PF07303.13 gi|313127287|ref|YP_004037557.1| - 7.4 7.4 9.4 3.9 8.3 2.0 2.1 1 1 0 2 2 2 0 Occludin homology domain eIF3_N PF09440.10 gi|313127287|ref|YP_004037557.1| - 7.9 6.9 13.7 2.9 8.3 4.2 2.1 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain bZIP_Maf PF03131.17 gi|313127287|ref|YP_004037557.1| - 8.5 7.0 11.8 3.3 8.3 2.6 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor PCRF PF03462.18 gi|313127287|ref|YP_004037557.1| - 9 6.1 14.0 20 5.0 14.0 1.5 1 1 0 1 1 1 0 PCRF domain DUF3194 PF11419.8 gi|313127288|ref|YP_004037558.1| - 5e-06 26.8 4.5 6.9e-06 26.3 4.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Nudix_N_2 PF14803.6 gi|313127289|ref|YP_004037559.1| - 0.0001 22.1 4.8 0.0099 15.8 0.4 2.3 2 0 0 2 2 2 2 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|313127289|ref|YP_004037559.1| - 0.00012 21.5 0.3 0.41 10.2 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|313127289|ref|YP_004037559.1| - 0.0023 18.0 0.9 0.23 11.6 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L37e UPF0547 PF10571.9 gi|313127289|ref|YP_004037559.1| - 0.0054 16.8 1.9 1.6 8.8 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DUF2387 PF09526.10 gi|313127289|ref|YP_004037559.1| - 0.008 16.3 1.8 1.6 8.9 0.1 2.1 1 1 1 2 2 2 2 Probable metal-binding protein (DUF2387) Ribosomal_L32p PF01783.23 gi|313127289|ref|YP_004037559.1| - 0.019 15.2 1.1 0.86 9.9 0.0 2.1 2 0 0 2 2 2 0 Ribosomal L32p protein family zf-H2C2_2 PF13465.6 gi|313127289|ref|YP_004037559.1| - 0.039 14.4 1.6 4.7 7.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.7 gi|313127289|ref|YP_004037559.1| - 0.048 13.7 2.0 1.6 8.8 2.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|313127289|ref|YP_004037559.1| - 0.1 12.5 5.3 0.19 11.7 0.3 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|313127289|ref|YP_004037559.1| - 0.1 12.1 3.1 1.6 8.3 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|313127289|ref|YP_004037559.1| - 0.11 12.6 3.3 0.59 10.2 3.3 1.9 1 1 0 1 1 1 0 Rubredoxin OrfB_Zn_ribbon PF07282.11 gi|313127289|ref|YP_004037559.1| - 0.11 12.5 3.1 0.18 11.8 3.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|313127289|ref|YP_004037559.1| - 0.17 12.1 3.6 1.7 8.9 3.7 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|313127289|ref|YP_004037559.1| - 0.2 11.4 3.7 3.7 7.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313127289|ref|YP_004037559.1| - 0.24 11.4 0.2 0.24 11.4 0.2 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-CCHC_4 PF14392.6 gi|313127289|ref|YP_004037559.1| - 0.28 11.0 2.8 0.39 10.5 0.2 2.0 2 0 0 2 2 2 0 Zinc knuckle Rubredoxin_2 PF18073.1 gi|313127289|ref|YP_004037559.1| - 0.33 10.7 3.6 7.3 6.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1610 PF07754.11 gi|313127289|ref|YP_004037559.1| - 4 7.5 7.6 7.7 6.6 1.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2070 PF09843.9 gi|313127290|ref|YP_004037560.1| - 9e-211 701.0 0.6 1e-210 700.9 0.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) GATase PF00117.28 gi|313127291|ref|YP_004037561.1| - 8.9e-36 123.4 0.0 1e-35 123.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313127291|ref|YP_004037561.1| - 1.8e-12 47.5 2.7 6.8e-11 42.3 0.6 2.9 2 1 0 2 2 2 1 Peptidase C26 LPG_synthase_TM PF03706.13 gi|313127292|ref|YP_004037562.1| - 3.9e-31 108.7 39.7 4.7e-31 108.4 39.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF3357 PF11837.8 gi|313127292|ref|YP_004037562.1| - 6.6 7.2 7.9 1.1 9.8 0.4 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3357) RecA_dep_nuc PF16786.5 gi|313127293|ref|YP_004037563.1| - 0.17 12.1 1.6 0.24 11.5 0.4 1.8 1 1 1 2 2 2 0 Recombination enhancement, RecA-dependent nuclease DUF192 PF02643.15 gi|313127294|ref|YP_004037564.1| - 8.9e-21 73.9 0.0 1e-20 73.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.19 gi|313127295|ref|YP_004037565.1| - 2.4e-65 220.7 2.5 2.4e-65 220.7 2.5 1.8 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|313127295|ref|YP_004037565.1| - 2.2e-32 111.7 1.2 4.3e-32 110.8 1.2 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|313127295|ref|YP_004037565.1| - 0.035 13.6 1.4 0.072 12.5 0.2 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel SusE PF14292.6 gi|313127295|ref|YP_004037565.1| - 0.11 12.7 0.1 0.29 11.4 0.1 1.7 1 0 0 1 1 1 0 SusE outer membrane protein Pentapeptide_3 PF13576.6 gi|313127296|ref|YP_004037566.1| - 0.043 14.0 0.2 0.053 13.7 0.2 1.2 1 0 0 1 1 1 0 Pentapeptide repeats (9 copies) Oxidored_molyb PF00174.19 gi|313127298|ref|YP_004037568.1| - 5.5e-29 101.0 0.0 8.6e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|313127298|ref|YP_004037568.1| - 3.6e-12 46.5 0.1 6.8e-12 45.6 0.1 1.4 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain Creatininase PF02633.14 gi|313127299|ref|YP_004037569.1| - 1.3e-64 218.0 4.3 1.5e-64 217.8 4.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase AAA_3 PF07726.11 gi|313127300|ref|YP_004037570.1| - 1.5e-66 222.2 0.2 3.6e-66 221.0 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|313127300|ref|YP_004037570.1| - 4.4e-20 71.3 1.5 9.5e-20 70.2 1.5 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|313127300|ref|YP_004037570.1| - 4.8e-14 52.5 0.0 1.6e-13 50.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313127300|ref|YP_004037570.1| - 2.9e-06 27.8 0.0 5.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313127300|ref|YP_004037570.1| - 1.6e-05 24.7 0.0 0.00016 21.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|313127300|ref|YP_004037570.1| - 0.0036 16.7 0.2 2.8 7.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|313127300|ref|YP_004037570.1| - 0.0082 15.9 0.0 0.11 12.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|313127300|ref|YP_004037570.1| - 0.0089 15.1 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain AAA_2 PF07724.14 gi|313127300|ref|YP_004037570.1| - 0.095 12.8 0.0 0.35 11.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.18 gi|313127302|ref|YP_004037572.1| - 4.8e-23 81.2 1.2 1.1e-22 80.1 1.2 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|313127302|ref|YP_004037572.1| - 5.5e-10 39.4 1.8 8.2e-10 38.9 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|313127302|ref|YP_004037572.1| - 0.0054 16.1 0.0 0.0085 15.5 0.0 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|313127302|ref|YP_004037572.1| - 0.0098 16.1 0.8 0.028 14.6 0.3 2.0 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|313127302|ref|YP_004037572.1| - 0.17 12.1 0.1 0.39 11.0 0.1 1.6 1 1 0 1 1 1 0 CARDB DUF4129 PF13559.6 gi|313127304|ref|YP_004037574.1| - 8.5e-11 42.0 1.4 2.1e-10 40.7 1.4 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF1724 PF08350.10 gi|313127305|ref|YP_004037575.1| - 1.4e-10 41.1 0.0 2.5e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_27 PF13463.6 gi|313127305|ref|YP_004037575.1| - 0.0068 16.9 0.1 0.019 15.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|313127305|ref|YP_004037575.1| - 0.0079 16.1 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313127305|ref|YP_004037575.1| - 0.03 14.2 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Na_H_Exchanger PF00999.21 gi|313127306|ref|YP_004037576.1| - 2.3e-58 197.8 38.0 3e-58 197.5 38.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family STAT_int PF02865.17 gi|313127306|ref|YP_004037576.1| - 0.13 12.7 0.7 1.2 9.6 0.1 2.2 2 0 0 2 2 2 0 STAT protein, protein interaction domain PT PF04886.12 gi|313127307|ref|YP_004037577.1| - 0.04 13.5 10.2 0.062 12.9 10.2 1.3 1 0 0 1 1 1 0 PT repeat PqqA PF08042.11 gi|313127309|ref|YP_004037579.1| - 0.16 12.1 0.1 0.29 11.2 0.1 1.5 1 0 0 1 1 1 0 PqqA family Peptidase_S8 PF00082.22 gi|313127310|ref|YP_004037580.1| - 2.9e-37 128.6 9.6 2.9e-37 128.6 9.6 1.8 2 1 0 2 2 2 1 Subtilase family CarboxypepD_reg PF13620.6 gi|313127310|ref|YP_004037580.1| - 0.014 15.6 1.7 0.072 13.4 1.7 2.3 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain T2SSE PF00437.20 gi|313127311|ref|YP_004037581.1| - 7.8e-24 84.2 0.0 1.9e-23 82.9 0.0 1.6 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|313127311|ref|YP_004037581.1| - 0.0018 17.9 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|313127311|ref|YP_004037581.1| - 0.0049 16.8 0.0 0.0092 15.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|313127311|ref|YP_004037581.1| - 0.0093 15.7 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313127311|ref|YP_004037581.1| - 0.011 16.2 0.0 0.02 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|313127311|ref|YP_004037581.1| - 0.045 14.1 0.0 0.14 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|313127311|ref|YP_004037581.1| - 0.048 13.8 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|313127311|ref|YP_004037581.1| - 0.18 12.2 0.1 0.56 10.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSF PF00482.23 gi|313127312|ref|YP_004037582.1| - 6.4e-22 77.8 2.9 3.3e-10 40.0 0.0 3.5 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Pilin_N PF07790.11 gi|313127313|ref|YP_004037583.1| - 0.0017 19.2 1.7 0.0036 18.2 1.7 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Borrelia_P13 PF05628.12 gi|313127313|ref|YP_004037583.1| - 0.33 10.9 1.0 0.53 10.2 1.0 1.3 1 0 0 1 1 1 0 Borrelia membrane protein P13 Pilin_N PF07790.11 gi|313127314|ref|YP_004037584.1| - 0.0091 16.9 0.3 0.022 15.7 0.3 1.7 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal eIF-1a PF01176.19 gi|313127315|ref|YP_004037585.1| - 0.048 13.5 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Sulfate_transp PF00916.20 gi|313127317|ref|YP_004037587.1| - 0.47 9.2 2.4 0.69 8.6 2.4 1.2 1 0 0 1 1 1 0 Sulfate permease family Trypsin PF00089.26 gi|313127318|ref|YP_004037588.1| - 1.7e-07 31.3 0.3 6.8e-07 29.3 0.3 1.9 1 1 0 1 1 1 1 Trypsin Trypsin_2 PF13365.6 gi|313127318|ref|YP_004037588.1| - 1.2e-06 29.5 0.6 1.2e-05 26.3 0.1 2.5 2 2 0 2 2 2 1 Trypsin-like peptidase domain SSF PF00474.17 gi|313127320|ref|YP_004037590.1| - 4e-46 157.7 37.8 4.9e-46 157.4 37.8 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family HTH_10 PF04967.12 gi|313127322|ref|YP_004037592.1| - 5e-15 55.0 0.0 9e-15 54.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain UPF0122 PF04297.14 gi|313127322|ref|YP_004037592.1| - 0.0014 18.8 0.1 0.0024 18.1 0.1 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like DNA_photolyase PF00875.18 gi|313127322|ref|YP_004037592.1| - 0.013 15.5 0.1 0.055 13.5 0.0 1.9 2 0 0 2 2 2 0 DNA photolyase Fe_dep_repress PF01325.19 gi|313127322|ref|YP_004037592.1| - 0.029 14.6 0.3 0.19 12.0 0.1 2.4 2 1 1 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|313127322|ref|YP_004037592.1| - 0.034 14.0 0.0 0.12 12.2 0.0 1.9 1 1 0 1 1 1 0 MarR family PuR_N PF09182.10 gi|313127322|ref|YP_004037592.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_11 PF08279.12 gi|313127322|ref|YP_004037592.1| - 0.063 13.2 0.0 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain adh_short_C2 PF13561.6 gi|313127323|ref|YP_004037593.1| - 4.8e-36 124.5 0.5 7e-36 124.0 0.5 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313127323|ref|YP_004037593.1| - 1.1e-31 109.9 0.3 1.4e-31 109.5 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313127323|ref|YP_004037593.1| - 0.0017 18.3 0.4 0.003 17.5 0.4 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|313127323|ref|YP_004037593.1| - 0.009 15.9 0.3 0.015 15.2 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|313127323|ref|YP_004037593.1| - 0.025 14.0 0.4 0.037 13.5 0.4 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family SnoaL PF07366.12 gi|313127324|ref|YP_004037594.1| - 7.8e-27 93.6 0.3 8.9e-27 93.4 0.3 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|313127324|ref|YP_004037594.1| - 3.3e-22 79.0 0.7 4.5e-22 78.6 0.7 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 gi|313127324|ref|YP_004037594.1| - 0.044 14.0 0.0 0.053 13.8 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain SSF PF00474.17 gi|313127325|ref|YP_004037595.1| - 1.2e-30 106.7 35.5 7.4e-30 104.1 35.5 2.1 1 1 0 1 1 1 1 Sodium:solute symporter family CbiA PF01656.23 gi|313127328|ref|YP_004037598.1| - 8.4e-18 64.7 0.0 1.4e-17 63.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|313127328|ref|YP_004037598.1| - 3.1e-12 46.8 0.0 4.5e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|313127328|ref|YP_004037598.1| - 7.2e-12 45.3 0.4 2.2e-06 27.3 0.4 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|313127328|ref|YP_004037598.1| - 4.1e-08 33.0 0.0 7.2e-05 22.4 0.0 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|313127328|ref|YP_004037598.1| - 8.4e-06 25.4 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|313127328|ref|YP_004037598.1| - 3e-05 23.4 0.9 0.0052 16.0 0.8 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.11 gi|313127328|ref|YP_004037598.1| - 0.00052 19.4 2.1 0.0077 15.5 2.1 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|313127328|ref|YP_004037598.1| - 0.00061 19.7 0.3 0.0094 15.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|313127328|ref|YP_004037598.1| - 0.027 14.2 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313127328|ref|YP_004037598.1| - 0.043 13.4 2.8 0.11 12.0 2.8 1.8 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|313127328|ref|YP_004037598.1| - 0.052 12.8 0.5 0.082 12.2 0.5 1.3 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.14 gi|313127328|ref|YP_004037598.1| - 0.079 12.1 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_30 PF13604.6 gi|313127328|ref|YP_004037598.1| - 0.24 11.1 2.0 0.24 11.1 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|313127328|ref|YP_004037598.1| - 0.35 9.8 0.3 0.5 9.3 0.3 1.1 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Elf-1_N PF12310.8 gi|313127329|ref|YP_004037599.1| - 0.17 12.5 0.0 0.25 11.9 0.0 1.3 1 0 0 1 1 1 0 Transcription factor protein N terminal HTH_10 PF04967.12 gi|313127331|ref|YP_004037601.1| - 5.4e-15 54.9 0.2 8.8e-15 54.2 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313127331|ref|YP_004037601.1| - 1.2e-08 35.0 0.1 1.8e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|313127331|ref|YP_004037601.1| - 0.00011 21.7 0.0 0.00024 20.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|313127331|ref|YP_004037601.1| - 0.0037 17.3 0.0 0.013 15.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix Phage_CI_repr PF07022.13 gi|313127331|ref|YP_004037601.1| - 0.0076 16.3 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313127331|ref|YP_004037601.1| - 0.01 15.3 0.1 0.025 14.1 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|313127331|ref|YP_004037601.1| - 0.035 14.0 0.1 0.12 12.3 0.1 2.0 1 1 0 1 1 1 0 MarR family HTH_8 PF02954.19 gi|313127331|ref|YP_004037601.1| - 0.041 13.7 0.1 0.11 12.3 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|313127331|ref|YP_004037601.1| - 0.051 13.7 0.2 0.24 11.6 0.3 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313127331|ref|YP_004037601.1| - 0.07 13.0 1.0 0.14 12.0 0.1 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313127331|ref|YP_004037601.1| - 0.12 12.1 0.0 0.12 12.1 0.0 2.3 4 0 0 4 4 4 0 Sigma-70, region 4 NADH_4Fe-4S PF10589.9 gi|313127332|ref|YP_004037602.1| - 1.5e-22 79.4 0.6 4.5e-22 77.9 0.5 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|313127332|ref|YP_004037602.1| - 3.9e-12 46.3 0.0 6e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.9 gi|313127332|ref|YP_004037602.1| - 0.0013 18.6 0.1 0.006 16.4 0.1 2.2 2 0 0 2 2 2 1 SLBB domain ADH_N PF08240.12 gi|313127332|ref|YP_004037602.1| - 0.081 12.8 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain AFOR_C PF01314.18 gi|313127334|ref|YP_004037604.1| - 7.9e-89 298.3 0.0 1.1e-88 297.8 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|313127334|ref|YP_004037604.1| - 4e-62 209.6 0.0 5.7e-62 209.1 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain GATase_3 PF07685.14 gi|313127335|ref|YP_004037605.1| - 1.4e-41 142.2 0.0 2.3e-41 141.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|313127335|ref|YP_004037605.1| - 3.6e-22 78.8 0.0 8.3e-22 77.6 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|313127335|ref|YP_004037605.1| - 5.9e-17 62.2 0.0 1.1e-09 38.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF1611 PF07755.11 gi|313127335|ref|YP_004037605.1| - 0.0046 16.3 0.1 0.055 12.7 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain DJ-1_PfpI PF01965.24 gi|313127335|ref|YP_004037605.1| - 0.0089 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family CTP_synth_N PF06418.14 gi|313127335|ref|YP_004037605.1| - 0.16 11.2 0.0 0.57 9.5 0.0 1.9 3 0 0 3 3 3 0 CTP synthase N-terminus SNO PF01174.19 gi|313127335|ref|YP_004037605.1| - 0.17 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family ParA PF10609.9 gi|313127335|ref|YP_004037605.1| - 0.22 11.0 0.1 0.5 9.8 0.1 1.5 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase CobA_CobO_BtuR PF02572.15 gi|313127336|ref|YP_004037606.1| - 6.4e-55 186.0 0.0 7.6e-55 185.8 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|313127336|ref|YP_004037606.1| - 0.032 14.3 0.0 0.044 13.8 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Acyl-thio_N PF12590.8 gi|313127338|ref|YP_004037608.1| - 0.13 12.8 0.3 0.26 11.8 0.3 1.5 1 0 0 1 1 1 0 Acyl-ATP thioesterase GATase_3 PF07685.14 gi|313127339|ref|YP_004037609.1| - 1.5e-35 122.6 0.0 2e-35 122.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|313127339|ref|YP_004037609.1| - 8.1e-11 42.1 0.0 4.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|313127339|ref|YP_004037609.1| - 7e-08 32.6 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|313127339|ref|YP_004037609.1| - 0.00035 20.5 0.0 0.00057 19.8 0.0 1.2 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|313127339|ref|YP_004037609.1| - 0.036 13.7 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 CbiZ PF01955.18 gi|313127340|ref|YP_004037610.1| - 6.1e-42 143.9 4.1 7.4e-42 143.6 4.1 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase MoaE PF02391.17 gi|313127340|ref|YP_004037610.1| - 0.086 13.1 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 MoaE protein TetR_N PF00440.23 gi|313127340|ref|YP_004037610.1| - 0.2 11.5 2.1 0.33 10.8 0.1 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family CnrY PF17524.2 gi|313127340|ref|YP_004037610.1| - 1.5 9.1 4.9 2 8.7 1.2 2.7 2 1 1 3 3 3 0 Anti-sigma factor CnrY Aminotran_1_2 PF00155.21 gi|313127341|ref|YP_004037611.1| - 3.8e-33 115.2 0.0 5.1e-33 114.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|313127341|ref|YP_004037611.1| - 0.0021 17.4 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family NTP_transf_3 PF12804.7 gi|313127343|ref|YP_004037613.1| - 1.4e-18 67.8 3.4 1.7e-18 67.5 3.3 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|313127343|ref|YP_004037613.1| - 2.5e-09 37.4 0.0 2.9e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|313127343|ref|YP_004037613.1| - 4.7e-05 23.2 3.2 5.9e-05 22.9 1.1 1.9 1 1 1 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|313127343|ref|YP_004037613.1| - 0.00064 19.4 0.0 0.00096 18.8 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase DUF2064 PF09837.9 gi|313127343|ref|YP_004037613.1| - 0.019 14.8 0.3 0.039 13.8 0.2 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|313127343|ref|YP_004037613.1| - 0.025 13.8 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like CobS PF02654.15 gi|313127344|ref|YP_004037614.1| - 1.8e-39 136.1 20.2 2.1e-39 135.9 20.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PUMA PF15826.5 gi|313127344|ref|YP_004037614.1| - 0.073 13.2 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis CobD_Cbib PF03186.13 gi|313127345|ref|YP_004037615.1| - 2.6e-76 256.5 11.5 3.1e-76 256.2 11.5 1.0 1 0 0 1 1 1 1 CobD/Cbib protein AmpE PF17113.5 gi|313127345|ref|YP_004037615.1| - 0.039 13.3 1.7 0.051 12.9 0.7 1.5 1 1 1 2 2 2 0 Regulatory signalling modulator protein AmpE Hydrolase PF00702.26 gi|313127346|ref|YP_004037616.1| - 4.1e-08 33.8 0.2 1.1e-07 32.3 0.2 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|313127346|ref|YP_004037616.1| - 3e-05 24.2 0.0 3.8e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313127346|ref|YP_004037616.1| - 4e-05 23.6 0.0 9.1e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|313127346|ref|YP_004037616.1| - 0.11 12.6 0.0 1.5 9.0 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HhH-GPD PF00730.25 gi|313127347|ref|YP_004037617.1| - 0.00074 19.9 0.0 0.0013 19.2 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Peptidase_M24 PF00557.24 gi|313127348|ref|YP_004037618.1| - 1e-34 120.1 1.4 1.3e-34 119.7 1.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|313127348|ref|YP_004037618.1| - 6.8e-12 46.2 0.0 1.4e-11 45.2 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain AhpC-TSA PF00578.21 gi|313127349|ref|YP_004037619.1| - 1.8e-19 69.9 0.0 2.1e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313127349|ref|YP_004037619.1| - 1.2e-18 67.3 0.0 1.4e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin zinc_ribbon_2 PF13240.6 gi|313127350|ref|YP_004037620.1| - 9.1e-10 37.9 14.6 1.3e-06 27.9 5.7 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|313127350|ref|YP_004037620.1| - 1.1e-07 31.7 11.4 1.9e-07 31.0 11.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|313127350|ref|YP_004037620.1| - 7.1e-07 28.4 14.3 3.3e-05 23.1 4.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|313127350|ref|YP_004037620.1| - 1.1e-06 29.3 9.1 7.1e-05 23.5 1.2 2.3 2 0 0 2 2 2 2 zinc-ribbon family RHH_1 PF01402.21 gi|313127350|ref|YP_004037620.1| - 0.00015 21.6 6.0 0.0014 18.5 0.6 3.3 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family YwqJ-deaminase PF14431.6 gi|313127350|ref|YP_004037620.1| - 0.0017 18.6 3.7 0.0031 17.7 3.7 1.5 1 1 0 1 1 1 1 YwqJ-like deaminase Nudix_N_2 PF14803.6 gi|313127350|ref|YP_004037620.1| - 0.06 13.3 11.2 3.2 7.7 2.3 3.8 3 1 0 3 3 3 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|313127350|ref|YP_004037620.1| - 0.071 13.1 8.6 1.3 9.0 8.6 2.2 1 1 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|313127350|ref|YP_004037620.1| - 0.12 11.9 6.1 1.8 8.3 0.4 3.4 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger Prok-RING_1 PF14446.6 gi|313127350|ref|YP_004037620.1| - 0.14 12.1 10.9 0.23 11.4 6.9 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.6 gi|313127350|ref|YP_004037620.1| - 0.14 12.0 6.3 1.7 8.5 6.3 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-NADH-PPase PF09297.11 gi|313127350|ref|YP_004037620.1| - 0.15 11.8 8.0 0.86 9.3 0.6 3.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.8 gi|313127350|ref|YP_004037620.1| - 0.16 11.9 6.6 0.56 10.1 0.8 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|313127350|ref|YP_004037620.1| - 0.17 12.0 11.3 0.49 10.6 3.7 3.3 2 2 1 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|313127350|ref|YP_004037620.1| - 0.36 10.9 11.6 0.34 10.9 2.1 2.6 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2752 PF10825.8 gi|313127350|ref|YP_004037620.1| - 1.4 9.0 3.0 15 5.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Zn_ribbon_SprT PF17283.2 gi|313127350|ref|YP_004037620.1| - 2.3 8.2 12.0 5 7.1 0.4 3.5 3 1 1 4 4 4 0 SprT-like zinc ribbon domain Cys_rich_KTR PF14205.6 gi|313127350|ref|YP_004037620.1| - 2.3 8.1 7.3 7.1 6.5 0.1 2.7 3 0 0 3 3 2 0 Cysteine-rich KTR NOB1_Zn_bind PF08772.11 gi|313127350|ref|YP_004037620.1| - 4.4 7.5 12.5 19 5.5 5.8 3.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.6 gi|313127350|ref|YP_004037620.1| - 6.9 6.8 8.9 34 4.6 8.9 2.2 1 1 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|313127350|ref|YP_004037620.1| - 7.5 6.6 11.9 95 3.0 10.4 2.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RHH_1 PF01402.21 gi|313127351|ref|YP_004037621.1| - 2.8e-08 33.4 0.2 3.6e-08 33.0 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|313127351|ref|YP_004037621.1| - 7.1e-05 23.0 0.0 7.5e-05 22.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family PSK_trans_fac PF07704.11 gi|313127351|ref|YP_004037621.1| - 0.036 14.8 0.7 0.052 14.3 0.7 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor Tubulin PF00091.25 gi|313127352|ref|YP_004037622.1| - 2.8e-37 128.8 3.5 8.3e-37 127.3 3.5 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|313127352|ref|YP_004037622.1| - 1.6e-35 121.3 0.7 1.6e-35 121.3 0.7 2.7 2 1 0 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|313127352|ref|YP_004037622.1| - 0.058 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 ThiF family Csm1_B PF18211.1 gi|313127352|ref|YP_004037622.1| - 0.09 12.6 0.0 0.32 10.9 0.0 1.9 1 0 0 1 1 1 0 Csm1 subunit domain B IMUP PF15761.5 gi|313127352|ref|YP_004037622.1| - 3.6 8.3 9.6 9.1 7.0 9.6 1.6 1 0 0 1 1 1 0 Immortalisation up-regulated protein Copper-bind PF00127.20 gi|313127353|ref|YP_004037623.1| - 1.7e-13 50.8 0.1 5.8e-13 49.1 0.1 1.9 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|313127353|ref|YP_004037623.1| - 0.12 12.2 1.8 0.42 10.6 1.8 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ATP_bind_3 PF01171.20 gi|313127354|ref|YP_004037624.1| - 9.4e-15 54.8 0.0 1.7e-14 54.0 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|313127354|ref|YP_004037624.1| - 1.7e-05 24.9 0.0 2.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|313127354|ref|YP_004037624.1| - 0.0003 20.0 0.0 0.00055 19.1 0.0 1.4 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|313127354|ref|YP_004037624.1| - 0.0016 17.9 1.6 0.0016 17.9 1.6 2.1 2 0 0 2 2 2 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|313127354|ref|YP_004037624.1| - 0.0051 15.6 0.0 0.007 15.2 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|313127354|ref|YP_004037624.1| - 0.051 13.1 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) RecR PF02132.15 gi|313127354|ref|YP_004037624.1| - 0.56 9.8 8.0 0.76 9.4 2.4 3.2 3 0 0 3 3 3 0 RecR protein Chordopox_A13L PF05961.11 gi|313127356|ref|YP_004037626.1| - 0.17 12.1 0.0 0.2 11.9 0.0 1.1 1 0 0 1 1 1 0 Chordopoxvirus A13L protein zinc_ribbon_13 PF09855.9 gi|313127357|ref|YP_004037627.1| - 3.6e-26 91.1 0.3 4.1e-26 90.9 0.3 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C4_Topoisom PF01396.19 gi|313127357|ref|YP_004037627.1| - 0.0015 18.2 2.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|313127357|ref|YP_004037627.1| - 0.002 17.5 1.6 0.68 9.4 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|313127357|ref|YP_004037627.1| - 0.0028 17.6 2.8 0.71 9.9 0.4 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.7 gi|313127357|ref|YP_004037627.1| - 0.0036 17.3 0.2 0.0049 16.9 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|313127357|ref|YP_004037627.1| - 0.004 17.5 0.2 0.0054 17.1 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar CpXC PF14353.6 gi|313127357|ref|YP_004037627.1| - 0.012 15.7 0.8 0.028 14.5 0.8 1.6 1 1 0 1 1 1 0 CpXC protein DUF2387 PF09526.10 gi|313127357|ref|YP_004037627.1| - 0.017 15.2 0.7 0.63 10.2 0.6 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.10 gi|313127357|ref|YP_004037627.1| - 0.024 14.7 0.4 1.5 9.0 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|313127357|ref|YP_004037627.1| - 0.044 13.5 3.5 1.1 9.1 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37e PF01907.19 gi|313127357|ref|YP_004037627.1| - 0.053 13.7 1.0 0.64 10.2 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein L37e zf-C2H2_3 PF13878.6 gi|313127357|ref|YP_004037627.1| - 0.055 13.3 1.0 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.11 gi|313127357|ref|YP_004037627.1| - 0.065 13.2 4.0 2.2 8.3 0.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|313127357|ref|YP_004037627.1| - 0.082 12.4 4.1 1.1 8.8 4.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2225 PF09986.9 gi|313127357|ref|YP_004037627.1| - 0.093 12.4 1.1 0.31 10.7 1.1 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) TFIIS_C PF01096.18 gi|313127357|ref|YP_004037627.1| - 0.1 12.5 5.4 1.3 8.9 0.3 2.5 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.17 gi|313127357|ref|YP_004037627.1| - 0.11 12.3 3.7 3.7 7.3 1.2 2.3 2 1 0 2 2 2 0 Ribosomal protein S27 RNA_POL_M_15KD PF02150.16 gi|313127357|ref|YP_004037627.1| - 0.14 12.0 2.2 2.3 8.2 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS91 PF14319.6 gi|313127357|ref|YP_004037627.1| - 0.17 11.9 1.9 1.3 9.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain zf_C2H2_10 PF18414.1 gi|313127357|ref|YP_004037627.1| - 0.23 11.0 0.8 0.39 10.3 0.1 1.7 2 0 0 2 2 2 0 C2H2 type zinc-finger zinc_ribbon_4 PF13717.6 gi|313127357|ref|YP_004037627.1| - 0.82 9.6 4.0 15 5.6 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|313127357|ref|YP_004037627.1| - 0.91 9.7 6.5 7.1 6.8 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Methyltransf_25 PF13649.6 gi|313127358|ref|YP_004037628.1| - 2e-17 63.7 0.1 7.3e-17 61.9 0.0 2.0 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313127358|ref|YP_004037628.1| - 5e-17 62.3 0.0 1.4e-16 60.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127358|ref|YP_004037628.1| - 2e-13 50.4 0.0 3.5e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313127358|ref|YP_004037628.1| - 1.8e-11 44.1 0.0 2.5e-11 43.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313127358|ref|YP_004037628.1| - 4.6e-09 36.9 0.0 1.7e-08 35.1 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313127358|ref|YP_004037628.1| - 1.9e-06 27.4 0.0 3.2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|313127358|ref|YP_004037628.1| - 3.1e-06 26.9 0.0 5.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|313127358|ref|YP_004037628.1| - 7.8e-06 25.5 0.0 1.9e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|313127358|ref|YP_004037628.1| - 4.8e-05 23.4 0.0 8.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|313127358|ref|YP_004037628.1| - 9.9e-05 21.9 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|313127358|ref|YP_004037628.1| - 0.008 15.9 0.0 0.022 14.5 0.0 1.7 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|313127358|ref|YP_004037628.1| - 0.043 12.4 0.0 0.063 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.20 gi|313127358|ref|YP_004037628.1| - 0.051 12.6 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|313127358|ref|YP_004037628.1| - 0.087 12.1 0.1 0.25 10.6 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|313127358|ref|YP_004037628.1| - 0.21 11.4 0.1 0.34 10.7 0.1 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Exo_endo_phos PF03372.23 gi|313127359|ref|YP_004037629.1| - 6.2e-10 39.0 0.4 1.4e-09 37.8 0.4 1.6 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family TAT_signal PF10518.9 gi|313127359|ref|YP_004037629.1| - 0.028 14.3 7.4 0.028 14.3 7.4 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence AP_endonuc_2 PF01261.24 gi|313127360|ref|YP_004037630.1| - 1.2e-25 90.3 1.0 1.8e-25 89.7 0.4 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AhpC-TSA PF00578.21 gi|313127361|ref|YP_004037631.1| - 3.7e-21 75.3 0.0 4.4e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313127361|ref|YP_004037631.1| - 8.1e-16 58.1 0.0 1.2e-15 57.4 0.0 1.3 1 1 1 2 2 2 1 Redoxin AhpC-TSA_2 PF13911.6 gi|313127361|ref|YP_004037631.1| - 0.12 12.6 0.1 0.39 10.9 0.1 1.8 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme BPL_LplA_LipB PF03099.19 gi|313127362|ref|YP_004037632.1| - 3.2e-09 36.8 0.0 5.1e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family adh_short PF00106.25 gi|313127363|ref|YP_004037633.1| - 3.1e-35 121.4 0.0 4.1e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313127363|ref|YP_004037633.1| - 6.7e-24 84.7 0.2 8e-24 84.5 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.6 gi|313127363|ref|YP_004037633.1| - 8.5e-09 35.6 0.2 1.1e-08 35.2 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|313127363|ref|YP_004037633.1| - 6.9e-08 32.6 0.1 1.4e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313127363|ref|YP_004037633.1| - 1.8e-07 30.9 0.0 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|313127363|ref|YP_004037633.1| - 0.082 12.2 0.0 0.34 10.2 0.0 1.9 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.15 gi|313127363|ref|YP_004037633.1| - 0.11 12.4 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein MoCF_biosynth PF00994.24 gi|313127363|ref|YP_004037633.1| - 0.14 11.9 0.0 0.3 10.7 0.0 1.8 2 1 0 2 2 2 0 Probable molybdopterin binding domain DUF4112 PF13430.6 gi|313127365|ref|YP_004037635.1| - 2.6e-29 101.6 0.4 3e-29 101.4 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) CRAL_TRIO_N PF03765.15 gi|313127365|ref|YP_004037635.1| - 0.079 13.2 0.2 0.13 12.5 0.2 1.3 1 0 0 1 1 1 0 CRAL/TRIO, N-terminal domain GBR_NSP5 PF17580.2 gi|313127368|ref|YP_004037638.1| - 0.089 12.6 0.3 0.13 12.1 0.3 1.3 1 0 0 1 1 1 0 Group B Rotavirus Non-structural protein 5 RIO1 PF01163.22 gi|313127369|ref|YP_004037639.1| - 3.6e-47 160.4 0.1 5.6e-47 159.8 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|313127369|ref|YP_004037639.1| - 3.3e-26 91.3 0.0 6.5e-26 90.4 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal Regulator_TrmB PF11495.8 gi|313127370|ref|YP_004037640.1| - 3.6e-62 209.6 0.0 4.6e-62 209.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|313127370|ref|YP_004037640.1| - 8.7e-16 57.6 0.0 2.8e-15 56.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313127370|ref|YP_004037640.1| - 0.002 18.0 0.0 0.0057 16.5 0.0 1.8 1 0 0 1 1 1 1 MarR family PLDc_2 PF13091.6 gi|313127370|ref|YP_004037640.1| - 0.0047 16.8 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain Rrf2 PF02082.20 gi|313127370|ref|YP_004037640.1| - 0.012 15.9 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|313127370|ref|YP_004037640.1| - 0.016 15.2 0.6 2.1 8.3 0.0 2.5 2 0 0 2 2 2 0 HTH domain MerR-DNA-bind PF09278.11 gi|313127370|ref|YP_004037640.1| - 0.026 15.1 0.4 1.5 9.4 0.0 2.6 2 0 0 2 2 2 0 MerR, DNA binding MarR PF01047.22 gi|313127370|ref|YP_004037640.1| - 0.061 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family Glu_dehyd_C PF16912.5 gi|313127370|ref|YP_004037640.1| - 0.078 12.4 0.0 0.23 10.9 0.0 1.8 1 1 1 2 2 2 0 Glucose dehydrogenase C-terminus Alpha-amylase PF00128.24 gi|313127371|ref|YP_004037641.1| - 7.4e-47 160.5 0.0 1.1e-46 160.0 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|313127371|ref|YP_004037641.1| - 7e-09 35.9 0.0 2.2e-08 34.3 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|313127371|ref|YP_004037641.1| - 0.00013 22.0 0.0 0.00039 20.5 0.0 1.8 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Alpha-amylase_C PF02806.18 gi|313127371|ref|YP_004037641.1| - 0.00097 19.6 0.1 0.015 15.8 0.0 2.9 3 1 0 3 3 3 1 Alpha amylase, C-terminal all-beta domain Lipase_GDSL_2 PF13472.6 gi|313127371|ref|YP_004037641.1| - 0.0041 17.5 0.1 0.14 12.6 0.0 2.5 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Glyco_hydro_15 PF00723.21 gi|313127372|ref|YP_004037642.1| - 0.00077 18.4 0.3 0.01 14.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolases family 15 DUF1391 PF07151.12 gi|313127372|ref|YP_004037642.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1391) ABC_tran PF00005.27 gi|313127373|ref|YP_004037643.1| - 8.6e-35 120.2 0.0 1.5e-34 119.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|313127373|ref|YP_004037643.1| - 1.4e-09 38.6 0.0 6.3e-09 36.5 0.0 2.2 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|313127373|ref|YP_004037643.1| - 1.6e-09 37.8 0.5 5.8e-09 36.0 0.5 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|313127373|ref|YP_004037643.1| - 6.2e-07 29.5 0.1 0.0034 17.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|313127373|ref|YP_004037643.1| - 4e-06 27.0 0.1 9.9e-06 25.8 0.1 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|313127373|ref|YP_004037643.1| - 6.7e-05 22.4 0.1 0.00021 20.8 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|313127373|ref|YP_004037643.1| - 0.0042 17.6 0.5 0.1 13.2 0.0 3.1 3 0 0 3 3 3 1 CysA C-terminal regulatory domain AAA_22 PF13401.6 gi|313127373|ref|YP_004037643.1| - 0.005 17.1 0.3 0.0089 16.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313127373|ref|YP_004037643.1| - 0.0051 17.2 0.2 0.008 16.6 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|313127373|ref|YP_004037643.1| - 0.0093 15.9 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain G-alpha PF00503.20 gi|313127373|ref|YP_004037643.1| - 0.0097 15.1 0.0 0.013 14.7 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA PF00004.29 gi|313127373|ref|YP_004037643.1| - 0.017 15.6 0.2 0.076 13.4 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|313127373|ref|YP_004037643.1| - 0.02 15.5 0.0 0.043 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313127373|ref|YP_004037643.1| - 0.023 14.4 0.8 0.11 12.3 0.0 2.5 4 0 0 4 4 4 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|313127373|ref|YP_004037643.1| - 0.024 14.6 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|313127373|ref|YP_004037643.1| - 0.034 13.4 0.0 0.07 12.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|313127373|ref|YP_004037643.1| - 0.05 13.3 0.2 0.19 11.4 0.0 2.1 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|313127373|ref|YP_004037643.1| - 0.2 12.1 0.0 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase SBP_bac_8 PF13416.6 gi|313127374|ref|YP_004037644.1| - 1.3e-34 120.3 7.5 2e-34 119.7 7.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313127374|ref|YP_004037644.1| - 1.9e-16 60.9 7.6 1.9e-16 60.9 7.6 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|313127374|ref|YP_004037644.1| - 0.0017 18.1 0.1 0.0033 17.2 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|313127375|ref|YP_004037645.1| - 3.2e-16 59.6 14.2 3.2e-16 59.6 14.2 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|313127375|ref|YP_004037645.1| - 0.22 11.7 1.3 0.42 10.8 0.4 1.9 2 0 0 2 2 2 0 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|313127376|ref|YP_004037646.1| - 3.5e-16 59.5 14.4 3.5e-16 59.5 14.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Cupin_2 PF07883.11 gi|313127377|ref|YP_004037647.1| - 4.9e-13 48.6 0.0 8.2e-13 47.9 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|313127377|ref|YP_004037647.1| - 3.1e-06 27.2 0.0 4.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.12 gi|313127377|ref|YP_004037647.1| - 7.4e-05 22.5 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ DMSP_lyase PF16867.5 gi|313127377|ref|YP_004037647.1| - 0.00045 19.9 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|313127377|ref|YP_004037647.1| - 0.0056 16.3 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|313127377|ref|YP_004037647.1| - 0.034 13.8 0.1 0.038 13.7 0.1 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_1 PF00190.22 gi|313127377|ref|YP_004037647.1| - 0.05 13.2 0.0 0.088 12.4 0.0 1.5 1 1 0 1 1 1 0 Cupin MannoseP_isomer PF01050.18 gi|313127377|ref|YP_004037647.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Ribosomal_L15e PF00827.17 gi|313127378|ref|YP_004037648.1| - 7.1e-83 277.0 4.8 8e-83 276.9 4.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 YjbF PF11102.8 gi|313127378|ref|YP_004037648.1| - 0.14 11.9 0.1 0.9 9.3 0.1 2.0 1 1 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CPBP PF02517.16 gi|313127379|ref|YP_004037649.1| - 1.5e-10 41.2 17.1 8.9e-10 38.8 17.1 2.3 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Rhodanese PF00581.20 gi|313127380|ref|YP_004037650.1| - 4.5e-14 52.9 0.0 8.5e-14 52.0 0.0 1.4 1 1 0 1 1 1 1 Rhodanese-like domain ThiF PF00899.21 gi|313127381|ref|YP_004037651.1| - 3.7e-69 232.8 0.0 4.8e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|313127381|ref|YP_004037651.1| - 0.005 17.1 1.0 0.021 15.1 1.0 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|313127381|ref|YP_004037651.1| - 0.01 15.9 0.1 0.019 15.0 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|313127381|ref|YP_004037651.1| - 0.014 16.0 0.1 0.026 15.2 0.1 1.5 1 0 0 1 1 1 0 PglD N-terminal domain MCPsignal PF00015.21 gi|313127382|ref|YP_004037652.1| - 2.8e-39 134.7 44.3 1.8e-37 128.8 27.7 3.0 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|313127382|ref|YP_004037652.1| - 7.8e-06 25.9 0.0 2.3e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|313127382|ref|YP_004037652.1| - 8.7e-06 26.0 5.8 1.6e-05 25.1 0.2 3.7 3 1 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|313127382|ref|YP_004037652.1| - 3.6e-05 24.0 0.1 0.00021 21.5 0.0 2.4 2 1 1 3 3 2 1 PAS domain Kre28 PF17097.5 gi|313127382|ref|YP_004037652.1| - 0.0024 16.9 14.8 0.021 13.8 14.3 2.2 1 1 0 1 1 1 1 Spindle pole body component DUF948 PF06103.11 gi|313127382|ref|YP_004037652.1| - 0.02 15.1 26.2 0.76 10.1 4.1 5.2 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) TMP_2 PF06791.13 gi|313127382|ref|YP_004037652.1| - 0.043 13.5 30.3 0.019 14.6 7.5 3.1 1 1 2 3 3 3 0 Prophage tail length tape measure protein UPF0242 PF06785.11 gi|313127382|ref|YP_004037652.1| - 0.049 13.7 8.9 2.9 8.0 4.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HAMP PF00672.25 gi|313127382|ref|YP_004037652.1| - 0.093 13.1 15.1 5.8 7.4 0.5 5.7 5 1 0 5 5 4 0 HAMP domain DUF3450 PF11932.8 gi|313127382|ref|YP_004037652.1| - 0.11 11.8 27.1 0.7 9.2 10.5 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) DUF745 PF05335.13 gi|313127382|ref|YP_004037652.1| - 0.23 11.2 38.4 0.48 10.1 9.2 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF745) Dor1 PF04124.12 gi|313127382|ref|YP_004037652.1| - 0.23 10.1 6.9 1.5 7.4 0.6 2.4 2 0 0 2 2 2 0 Dor1-like family DASH_Dam1 PF08653.10 gi|313127382|ref|YP_004037652.1| - 0.26 11.1 3.6 29 4.6 0.1 4.4 4 0 0 4 4 4 0 DASH complex subunit Dam1 Spc7 PF08317.11 gi|313127382|ref|YP_004037652.1| - 0.4 9.5 24.6 0.73 8.7 4.7 2.4 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF489 PF04356.12 gi|313127382|ref|YP_004037652.1| - 0.4 10.7 7.8 3.1 7.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF489) ISG65-75 PF11727.8 gi|313127382|ref|YP_004037652.1| - 0.55 9.4 17.7 0.16 11.2 2.2 2.4 2 0 0 2 2 2 0 Invariant surface glycoprotein PAS_7 PF12860.7 gi|313127382|ref|YP_004037652.1| - 0.62 10.2 5.0 3.1 8.0 0.0 3.5 3 1 1 4 4 4 0 PAS fold CorA PF01544.18 gi|313127382|ref|YP_004037652.1| - 0.73 9.1 15.7 0.24 10.7 5.4 2.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein ATG16 PF08614.11 gi|313127382|ref|YP_004037652.1| - 1.5 9.0 22.8 0.55 10.4 9.4 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) AIP3 PF03915.13 gi|313127382|ref|YP_004037652.1| - 1.5 7.8 20.4 0.63 9.1 10.4 2.2 1 1 1 2 2 2 0 Actin interacting protein 3 CoatB PF10389.9 gi|313127382|ref|YP_004037652.1| - 1.8 8.4 5.7 4 7.4 0.9 2.8 1 1 1 2 2 2 0 Bacteriophage coat protein B Sec5 PF15469.6 gi|313127382|ref|YP_004037652.1| - 2.4 7.9 5.0 13 5.5 4.5 2.4 1 1 1 2 2 2 0 Exocyst complex component Sec5 Laminin_II PF06009.12 gi|313127382|ref|YP_004037652.1| - 2.7 8.0 27.5 2.7 8.0 9.7 4.1 1 1 2 4 4 4 0 Laminin Domain II I_LWEQ PF01608.17 gi|313127382|ref|YP_004037652.1| - 2.8 8.2 26.3 0.34 11.2 7.1 3.5 1 1 2 3 3 3 0 I/LWEQ domain TMPIT PF07851.13 gi|313127382|ref|YP_004037652.1| - 3 7.0 9.9 6.9 5.8 5.2 2.2 2 0 0 2 2 2 0 TMPIT-like protein SKA1 PF07160.12 gi|313127382|ref|YP_004037652.1| - 3.1 7.6 12.1 6.5 6.5 0.3 2.3 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 WXG100 PF06013.12 gi|313127382|ref|YP_004037652.1| - 5.2 7.4 29.0 1.6 9.0 0.6 5.8 3 2 3 6 6 6 0 Proteins of 100 residues with WXG Prominin PF05478.11 gi|313127382|ref|YP_004037652.1| - 8.2 4.2 11.1 13 3.6 9.5 1.8 1 1 1 2 2 2 0 Prominin DUF4665 PF15679.5 gi|313127382|ref|YP_004037652.1| - 8.7 7.0 6.0 3.2 8.4 1.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4665) TMF_TATA_bd PF12325.8 gi|313127382|ref|YP_004037652.1| - 9.3 6.5 17.3 0.41 10.9 6.0 3.1 2 2 0 2 2 2 0 TATA element modulatory factor 1 TATA binding HTH_10 PF04967.12 gi|313127383|ref|YP_004037653.1| - 1.2e-13 50.6 0.0 2.1e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313127383|ref|YP_004037653.1| - 7.5e-05 22.7 2.0 0.00051 20.0 0.0 2.6 2 1 1 3 3 3 1 GAF and HTH_10 associated domain Sigma70_r4_2 PF08281.12 gi|313127383|ref|YP_004037653.1| - 0.025 14.3 0.5 0.74 9.5 0.2 2.8 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|313127383|ref|YP_004037653.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313127383|ref|YP_004037653.1| - 0.08 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Complex1_49kDa PF00346.19 gi|313127384|ref|YP_004037654.1| - 2.5e-82 276.0 0.0 5.9e-81 271.5 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|313127384|ref|YP_004037654.1| - 1.8e-34 118.9 0.1 4.5e-34 117.7 0.1 1.7 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MutS_V PF00488.21 gi|313127385|ref|YP_004037655.1| - 4.6e-88 294.2 0.0 8.6e-88 293.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|313127385|ref|YP_004037655.1| - 4.5e-39 134.7 3.2 9.6e-39 133.6 3.2 1.6 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|313127385|ref|YP_004037655.1| - 1.4e-26 92.9 0.0 3.1e-26 91.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|313127385|ref|YP_004037655.1| - 1.5e-24 86.1 2.0 4.1e-24 84.7 2.0 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|313127385|ref|YP_004037655.1| - 9.3e-22 77.8 0.0 3.1e-21 76.1 0.0 1.9 2 0 0 2 2 2 1 MutS domain II AAA_14 PF13173.6 gi|313127385|ref|YP_004037655.1| - 0.13 12.3 0.0 0.49 10.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|313127385|ref|YP_004037655.1| - 0.16 12.4 0.1 5.6 7.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313127385|ref|YP_004037655.1| - 0.23 11.2 0.0 0.23 11.2 0.0 2.2 3 0 0 3 3 3 0 P-loop containing region of AAA domain NUDIX PF00293.28 gi|313127386|ref|YP_004037656.1| - 1.2e-17 64.2 0.3 1.4e-17 64.0 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain MutL_C PF08676.11 gi|313127387|ref|YP_004037657.1| - 4.7e-38 130.3 0.0 7.1e-38 129.7 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|313127387|ref|YP_004037657.1| - 2e-35 121.0 0.0 3.1e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|313127387|ref|YP_004037657.1| - 3.5e-12 46.3 0.1 7.7e-12 45.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|313127387|ref|YP_004037657.1| - 2e-07 31.5 0.2 4.3e-07 30.4 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aldose_epim PF01263.20 gi|313127387|ref|YP_004037657.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Aldose 1-epimerase PfkB PF00294.24 gi|313127388|ref|YP_004037658.1| - 2.1e-56 191.4 0.0 2.6e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PGF-CTERM PF18204.1 gi|313127389|ref|YP_004037659.1| - 2.1e-06 27.5 3.3 4.4e-06 26.5 3.3 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Gram_pos_anchor PF00746.21 gi|313127389|ref|YP_004037659.1| - 0.26 11.2 1.8 0.36 10.8 0.2 2.1 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Hid1 PF12722.7 gi|313127389|ref|YP_004037659.1| - 0.84 7.7 5.3 1 7.4 5.3 1.3 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Pirin_C PF05726.13 gi|313127389|ref|YP_004037659.1| - 2.1 8.7 5.3 3.4 8.1 0.2 3.3 2 2 2 4 4 4 0 Pirin C-terminal cupin domain Utp14 PF04615.13 gi|313127389|ref|YP_004037659.1| - 2.4 6.6 16.0 3.1 6.2 16.0 1.3 1 0 0 1 1 1 0 Utp14 protein Ntox50 PF15542.6 gi|313127389|ref|YP_004037659.1| - 4.1 8.3 6.0 0.63 10.9 0.5 2.4 2 0 0 2 2 2 0 Bacterial toxin 50 Pyr_redox_2 PF07992.14 gi|313127390|ref|YP_004037660.1| - 7.9e-41 140.2 0.3 1.2e-40 139.6 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|313127390|ref|YP_004037660.1| - 4.1e-10 40.1 0.0 4.1e-10 40.1 0.0 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|313127390|ref|YP_004037660.1| - 1.1e-06 28.8 0.0 2.4e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_9 PF13454.6 gi|313127390|ref|YP_004037660.1| - 5.1e-05 23.3 0.6 0.0099 15.9 0.5 3.2 2 1 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|313127390|ref|YP_004037660.1| - 7.1e-05 22.2 0.3 0.00034 20.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|313127390|ref|YP_004037660.1| - 0.00062 20.0 0.4 0.019 15.3 0.0 2.8 2 0 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|313127390|ref|YP_004037660.1| - 0.024 14.2 0.0 0.055 13.0 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 gi|313127390|ref|YP_004037660.1| - 0.027 13.6 0.0 0.27 10.3 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|313127390|ref|YP_004037660.1| - 0.039 13.2 0.5 4.6 6.4 0.0 3.3 4 0 0 4 4 4 0 Flavin containing amine oxidoreductase Semialdhyde_dh PF01118.24 gi|313127390|ref|YP_004037660.1| - 0.058 13.8 1.3 1.5 9.3 0.1 3.6 5 0 0 5 5 5 0 Semialdehyde dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|313127390|ref|YP_004037660.1| - 0.12 11.6 4.1 9.7 5.3 0.0 4.0 4 0 0 4 4 4 0 FAD binding domain HATPase_c PF02518.26 gi|313127391|ref|YP_004037661.1| - 1.6e-10 41.5 0.0 2.8e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|313127391|ref|YP_004037661.1| - 6e-10 38.9 2.4 1e-09 38.2 2.4 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|313127391|ref|YP_004037661.1| - 2.7e-06 27.4 0.1 4.1e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|313127391|ref|YP_004037661.1| - 0.0035 17.4 0.4 0.0071 16.4 0.4 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|313127391|ref|YP_004037661.1| - 0.021 14.5 1.4 0.039 13.6 1.4 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|313127391|ref|YP_004037661.1| - 0.051 13.5 0.0 0.08 12.9 0.0 1.3 1 0 0 1 1 1 0 GHKL domain Na_H_antiporter PF03553.14 gi|313127392|ref|YP_004037662.1| - 1e-53 182.5 41.3 5.2e-46 157.3 19.8 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family NikR_C PF08753.11 gi|313127394|ref|YP_004037664.1| - 1.3e-21 76.5 0.3 2.1e-21 75.9 0.3 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|313127394|ref|YP_004037664.1| - 3.3e-08 33.2 0.0 5.6e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|313127394|ref|YP_004037664.1| - 0.011 15.8 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system GP57 PF17594.2 gi|313127394|ref|YP_004037664.1| - 0.023 14.5 0.0 0.3 10.9 0.0 2.2 2 0 0 2 2 2 0 Phage Tail fiber assembly helper gene product 57 DUF1978 PF09321.10 gi|313127394|ref|YP_004037664.1| - 0.085 12.2 0.0 0.094 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) RHH_8 PF17723.1 gi|313127394|ref|YP_004037664.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family Response_reg PF00072.24 gi|313127395|ref|YP_004037665.1| - 8.4e-12 45.3 0.1 4.4e-11 42.9 0.0 2.1 2 1 1 3 3 3 1 Response regulator receiver domain HisKA PF00512.25 gi|313127395|ref|YP_004037665.1| - 8e-07 29.0 0.1 1.9e-06 27.8 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|313127395|ref|YP_004037665.1| - 0.0021 17.7 0.4 0.0036 16.9 0.4 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|313127395|ref|YP_004037665.1| - 0.0032 18.0 0.0 0.0081 16.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|313127395|ref|YP_004037665.1| - 0.037 14.0 0.1 0.1 12.5 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|313127395|ref|YP_004037665.1| - 0.079 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HxlR PF01638.17 gi|313127396|ref|YP_004037666.1| - 2.3e-20 72.2 0.0 7.8e-20 70.5 0.0 1.9 2 1 0 2 2 2 1 HxlR-like helix-turn-helix Response_reg PF00072.24 gi|313127396|ref|YP_004037666.1| - 5.6e-13 49.0 0.0 9.3e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain MarR_2 PF12802.7 gi|313127396|ref|YP_004037666.1| - 0.00014 21.7 0.0 0.00046 20.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|313127396|ref|YP_004037666.1| - 0.00017 21.6 0.1 0.0065 16.5 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|313127396|ref|YP_004037666.1| - 0.00019 21.3 0.1 0.00073 19.4 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313127396|ref|YP_004037666.1| - 0.00044 20.1 0.0 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313127396|ref|YP_004037666.1| - 0.00076 19.3 0.0 0.0019 18.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|313127396|ref|YP_004037666.1| - 0.05 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DZR PF12773.7 gi|313127397|ref|YP_004037667.1| - 0.0005 20.0 0.3 0.00076 19.4 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|313127397|ref|YP_004037667.1| - 0.0012 18.1 0.7 0.002 17.5 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|313127397|ref|YP_004037667.1| - 0.0049 16.5 1.7 0.021 14.5 1.8 1.9 1 1 2 3 3 3 2 zinc-ribbon domain TM2 PF05154.16 gi|313127397|ref|YP_004037667.1| - 0.009 16.3 0.2 0.015 15.6 0.2 1.3 1 0 0 1 1 1 1 TM2 domain zinc_ribbon_15 PF17032.5 gi|313127397|ref|YP_004037667.1| - 0.019 15.7 0.2 0.025 15.3 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|313127397|ref|YP_004037667.1| - 0.062 13.3 0.2 0.12 12.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons Peptidase_C15 PF01470.17 gi|313127398|ref|YP_004037668.1| - 6e-52 176.8 0.0 6.7e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Zip PF02535.22 gi|313127399|ref|YP_004037669.1| - 1.8e-16 60.3 18.3 3.5e-14 52.8 18.3 2.3 1 1 0 1 1 1 1 ZIP Zinc transporter ABC2_membrane_2 PF12679.7 gi|313127400|ref|YP_004037670.1| - 0.057 12.7 2.3 0.059 12.7 2.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein SNase PF00565.17 gi|313127401|ref|YP_004037671.1| - 7.4e-30 103.6 0.0 6.7e-14 52.3 0.0 2.4 2 0 0 2 2 2 2 Staphylococcal nuclease homologue Tudor_3 PF18115.1 gi|313127401|ref|YP_004037671.1| - 0.1 12.5 2.1 11 5.9 0.2 2.7 2 0 0 2 2 2 0 DNA repair protein Crb2 Tudor domain DUF1654 PF07867.11 gi|313127401|ref|YP_004037671.1| - 0.19 11.5 1.4 0.99 9.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1654) Clavanin PF05452.11 gi|313127401|ref|YP_004037671.1| - 1 9.6 6.0 10 6.4 1.0 2.4 2 0 0 2 2 2 0 Clavanin Cu-oxidase_2 PF07731.14 gi|313127402|ref|YP_004037672.1| - 5.5e-30 103.9 13.5 7.2e-19 67.9 2.2 3.2 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|313127402|ref|YP_004037672.1| - 3.5e-25 88.3 5.8 1.8e-20 73.1 0.6 2.7 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|313127402|ref|YP_004037672.1| - 1.4e-16 61.0 0.5 1.2e-15 58.0 0.1 2.2 2 1 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.20 gi|313127402|ref|YP_004037672.1| - 7.5e-06 26.3 1.5 0.0053 17.2 0.2 2.6 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313127402|ref|YP_004037672.1| - 0.0009 19.3 0.0 1.4 9.1 0.0 2.8 2 1 0 2 2 2 2 Cupredoxin-like domain CBM_4_9 PF02018.17 gi|313127402|ref|YP_004037672.1| - 0.099 12.9 0.0 3.1 8.1 0.0 2.7 2 1 0 2 2 2 0 Carbohydrate binding domain Self-incomp_S1 PF05938.11 gi|313127402|ref|YP_004037672.1| - 0.2 12.2 0.0 0.45 11.1 0.0 1.6 1 0 0 1 1 1 0 Plant self-incompatibility protein S1 Copper-bind PF00127.20 gi|313127403|ref|YP_004037673.1| - 2.4e-19 69.6 0.1 6.8e-11 42.5 0.0 3.4 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family tRNA_NucTransf2 PF09249.11 gi|313127405|ref|YP_004037675.1| - 1.9e-43 147.3 0.0 3.2e-43 146.6 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|313127405|ref|YP_004037675.1| - 5.6e-15 55.4 0.0 1e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|313127405|ref|YP_004037675.1| - 8.8e-05 22.7 0.0 0.00099 19.3 0.0 2.1 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Hist_deacetyl PF00850.19 gi|313127406|ref|YP_004037676.1| - 6.5e-83 278.7 0.0 8.9e-83 278.3 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Lipase_GDSL_2 PF13472.6 gi|313127406|ref|YP_004037676.1| - 0.00017 22.0 0.6 0.38 11.1 0.0 2.9 2 1 1 3 3 3 2 GDSL-like Lipase/Acylhydrolase family CBFD_NFYB_HMF PF00808.23 gi|313127407|ref|YP_004037677.1| - 4.7e-27 94.1 0.9 7.3e-14 51.8 0.1 2.1 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|313127407|ref|YP_004037677.1| - 9.1e-14 51.9 2.6 4.7e-10 39.9 0.5 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|313127407|ref|YP_004037677.1| - 3.9e-07 30.2 1.9 7.5e-05 22.8 0.2 2.1 1 1 1 2 2 2 2 Centromere kinetochore component CENP-T histone fold TFIID_20kDa PF03847.13 gi|313127407|ref|YP_004037677.1| - 0.00034 21.0 1.0 0.0014 19.1 0.4 2.0 2 0 0 2 2 2 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|313127407|ref|YP_004037677.1| - 0.00054 19.9 0.3 0.075 13.1 0.0 2.2 2 0 0 2 2 2 2 Transcription initiation factor IID, 18kD subunit TAF PF02969.17 gi|313127407|ref|YP_004037677.1| - 0.002 18.3 3.1 0.23 11.6 0.2 2.2 2 0 0 2 2 2 2 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|313127407|ref|YP_004037677.1| - 0.0027 18.0 1.4 0.0055 17.1 0.5 1.9 1 1 1 2 2 2 1 CENP-S protein DUF1931 PF09123.11 gi|313127407|ref|YP_004037677.1| - 0.0074 16.4 3.4 0.041 14.0 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1931) tRNA_anti-codon PF01336.25 gi|313127408|ref|YP_004037678.1| - 3.3e-32 110.3 11.3 3.3e-14 52.6 0.3 4.3 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|313127408|ref|YP_004037678.1| - 1.3e-13 51.2 0.2 7.3e-06 25.8 0.0 3.1 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|313127408|ref|YP_004037678.1| - 3.2e-11 43.0 3.1 2.7e-05 24.0 0.3 3.4 3 0 0 3 3 3 3 Replication protein A OB domain DUF4539 PF15072.6 gi|313127408|ref|YP_004037678.1| - 0.00014 21.8 0.8 0.16 12.0 0.0 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4539) SSB PF00436.25 gi|313127408|ref|YP_004037678.1| - 0.0017 18.4 0.4 0.054 13.5 0.0 3.3 4 0 0 4 4 4 1 Single-strand binding protein family tRNA_anti_2 PF13742.6 gi|313127408|ref|YP_004037678.1| - 0.028 14.6 0.1 4.4 7.6 0.0 3.2 4 0 0 4 4 4 0 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|313127408|ref|YP_004037678.1| - 0.081 12.7 0.2 25 4.6 0.0 3.1 3 0 0 3 3 3 0 Replication factor-A C terminal domain DUF4131 PF13567.6 gi|313127408|ref|YP_004037678.1| - 0.18 11.4 0.1 8.7 6.0 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) FYVE_2 PF02318.16 gi|313127410|ref|YP_004037680.1| - 0.028 14.6 0.1 0.028 14.6 0.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Zn_Tnp_IS91 PF14319.6 gi|313127410|ref|YP_004037680.1| - 0.034 14.2 0.6 0.038 14.0 0.6 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain TrkA_C PF02080.21 gi|313127411|ref|YP_004037681.1| - 2.5e-28 97.7 0.4 3.2e-15 55.7 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|313127411|ref|YP_004037681.1| - 1.6e-18 66.9 8.4 3.4e-09 37.1 2.8 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|313127411|ref|YP_004037681.1| - 0.0002 20.7 1.7 0.25 10.6 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 CLZ PF16526.5 gi|313127411|ref|YP_004037681.1| - 0.033 14.5 3.9 1.3 9.4 0.0 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Ribosomal_L34 PF00468.17 gi|313127411|ref|YP_004037681.1| - 0.061 13.3 2.9 1.6 8.7 0.2 2.3 2 0 0 2 2 2 0 Ribosomal protein L34 KfrA_N PF11740.8 gi|313127411|ref|YP_004037681.1| - 0.079 13.6 5.3 0.68 10.6 0.0 3.4 4 0 0 4 4 4 0 Plasmid replication region DNA-binding N-term bZIP_2 PF07716.15 gi|313127411|ref|YP_004037681.1| - 0.29 11.2 0.8 1.9 8.6 0.0 2.3 2 0 0 2 2 2 0 Basic region leucine zipper MFS_1 PF07690.16 gi|313127413|ref|YP_004037683.1| - 3.8e-15 55.7 59.3 6.4e-09 35.2 18.7 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily AstE_AspA PF04952.14 gi|313127414|ref|YP_004037684.1| - 7.4e-58 195.9 0.0 8.5e-58 195.7 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.25 gi|313127415|ref|YP_004037685.1| - 1.3e-59 202.0 1.5 1.5e-59 201.8 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubredoxin_2 PF18073.1 gi|313127415|ref|YP_004037685.1| - 1.1 9.0 6.1 2.1 8.1 6.1 1.5 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF2892 PF11127.8 gi|313127416|ref|YP_004037686.1| - 5e-14 52.1 6.6 8.9e-13 48.1 6.6 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1772 PF08592.11 gi|313127416|ref|YP_004037686.1| - 0.026 14.8 0.6 0.028 14.7 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF1676 PF07898.13 gi|313127416|ref|YP_004037686.1| - 0.99 9.4 2.5 1.1 9.2 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) SseC PF04888.12 gi|313127416|ref|YP_004037686.1| - 3 7.3 6.1 3.1 7.3 6.1 1.0 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family PCMT PF01135.19 gi|313127417|ref|YP_004037687.1| - 9e-35 120.3 0.0 1.1e-34 120.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|313127417|ref|YP_004037687.1| - 1.6e-06 27.8 0.1 2.5e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|313127417|ref|YP_004037687.1| - 8e-06 26.5 0.0 1.6e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127417|ref|YP_004037687.1| - 0.00014 21.6 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|313127417|ref|YP_004037687.1| - 0.0025 17.0 0.1 0.0036 16.5 0.1 1.1 1 0 0 1 1 1 1 Fibrillarin PrmA PF06325.13 gi|313127417|ref|YP_004037687.1| - 0.0041 16.6 0.1 0.0056 16.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|313127417|ref|YP_004037687.1| - 0.005 17.6 0.0 0.01 16.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|313127417|ref|YP_004037687.1| - 0.015 14.9 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|313127417|ref|YP_004037687.1| - 0.039 13.0 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Spermine_synth PF01564.17 gi|313127417|ref|YP_004037687.1| - 0.042 13.3 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Met_10 PF02475.16 gi|313127417|ref|YP_004037687.1| - 0.063 13.0 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein HEM4 PF02602.15 gi|313127417|ref|YP_004037687.1| - 0.1 11.9 0.1 0.18 11.1 0.1 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Methyltransf_32 PF13679.6 gi|313127417|ref|YP_004037687.1| - 0.13 12.2 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF2387 PF09526.10 gi|313127419|ref|YP_004037689.1| - 0.011 15.8 1.2 0.023 14.8 1.2 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Elf1 PF05129.13 gi|313127419|ref|YP_004037689.1| - 0.1 12.7 2.4 0.14 12.2 1.8 1.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|313127419|ref|YP_004037689.1| - 0.12 12.2 1.0 0.28 11.0 1.0 1.7 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|313127419|ref|YP_004037689.1| - 0.13 12.2 4.5 0.56 10.2 4.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|313127419|ref|YP_004037689.1| - 0.24 11.8 1.2 0.6 10.5 1.2 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-CSL PF05207.13 gi|313127419|ref|YP_004037689.1| - 0.33 10.7 4.2 2.2 8.1 0.1 2.7 1 1 1 2 2 2 0 CSL zinc finger Zn_Tnp_IS1 PF03811.13 gi|313127419|ref|YP_004037689.1| - 0.7 9.7 3.8 2.7 7.8 2.6 2.3 2 1 0 2 2 2 0 InsA N-terminal domain Peptidase_M29 PF02073.15 gi|313127420|ref|YP_004037690.1| - 9.2e-11 41.2 0.2 2e-09 36.8 0.1 2.0 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.20 gi|313127421|ref|YP_004037691.1| - 7.5e-19 67.9 0.0 1.2e-18 67.2 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|313127421|ref|YP_004037691.1| - 1.8e-08 34.6 0.1 4.1e-08 33.4 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|313127421|ref|YP_004037691.1| - 4.9e-05 23.6 0.1 0.0011 19.3 0.0 2.7 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|313127421|ref|YP_004037691.1| - 4.9e-05 24.0 0.0 0.00035 21.2 0.0 2.2 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|313127421|ref|YP_004037691.1| - 0.0071 15.7 0.2 0.056 12.8 0.1 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|313127421|ref|YP_004037691.1| - 0.088 13.1 0.0 0.27 11.5 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|313127421|ref|YP_004037691.1| - 0.13 12.7 0.0 0.35 11.3 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF4143 PF13635.6 gi|313127421|ref|YP_004037691.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Metallophos_2 PF12850.7 gi|313127422|ref|YP_004037692.1| - 1.3e-34 119.8 0.6 1.5e-34 119.6 0.6 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313127422|ref|YP_004037692.1| - 2.3e-07 31.5 4.9 0.00011 22.8 1.3 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|313127422|ref|YP_004037692.1| - 0.0044 16.4 0.0 0.11 11.8 0.0 2.0 1 1 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily PGK PF00162.19 gi|313127423|ref|YP_004037693.1| - 2.9e-104 349.0 0.1 3.4e-104 348.8 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|313127424|ref|YP_004037694.1| - 4.5e-58 195.3 0.0 6e-58 194.9 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|313127424|ref|YP_004037694.1| - 3.1e-32 110.9 0.0 5.6e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|313127424|ref|YP_004037694.1| - 0.0013 18.8 0.1 0.0032 17.6 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus PriA_3primeBD PF17764.1 gi|313127424|ref|YP_004037694.1| - 0.15 11.9 0.0 43 4.1 0.0 3.0 3 0 0 3 3 3 0 3′ DNA-binding domain (3′BD) ArsA_HSP20 PF17886.1 gi|313127425|ref|YP_004037695.1| - 8e-17 60.6 0.0 2.2e-16 59.2 0.0 1.6 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|313127425|ref|YP_004037695.1| - 1.8e-09 37.7 0.0 5.1e-08 33.0 0.0 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|313127425|ref|YP_004037695.1| - 0.00054 20.1 1.1 0.00064 19.8 1.1 1.1 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|313127425|ref|YP_004037695.1| - 0.017 15.5 0.0 0.021 15.2 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain Frataxin_Cyay PF01491.16 gi|313127425|ref|YP_004037695.1| - 0.027 14.6 0.0 1.4 9.1 0.0 2.2 1 1 0 1 1 1 0 Frataxin-like domain RimK PF08443.11 gi|313127426|ref|YP_004037696.1| - 2.6e-29 102.2 0.0 3.4e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|313127426|ref|YP_004037696.1| - 4.6e-12 45.7 0.0 6.6e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|313127426|ref|YP_004037696.1| - 5.5e-08 33.0 0.0 1e-07 32.2 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|313127426|ref|YP_004037696.1| - 4.6e-06 26.1 0.0 0.05 12.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|313127426|ref|YP_004037696.1| - 1.1e-05 25.0 0.0 2.2e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|313127426|ref|YP_004037696.1| - 0.00039 20.0 0.0 0.0005 19.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|313127426|ref|YP_004037696.1| - 0.0052 16.4 0.0 0.0086 15.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Btz PF09405.10 gi|313127426|ref|YP_004037696.1| - 0.031 14.6 0.0 0.051 13.9 0.0 1.3 1 0 0 1 1 1 0 CASC3/Barentsz eIF4AIII binding R2K_2 PF18299.1 gi|313127426|ref|YP_004037696.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 ATP-grasp_4 PF13535.6 gi|313127426|ref|YP_004037696.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Ribosomal_L16 PF00252.18 gi|313127427|ref|YP_004037697.1| - 6.5e-29 100.6 0.0 7.4e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e GATase PF00117.28 gi|313127428|ref|YP_004037698.1| - 4.3e-16 59.3 0.0 5.7e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313127428|ref|YP_004037698.1| - 2.4e-10 40.5 0.0 1.2e-08 35.0 0.0 2.5 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|313127428|ref|YP_004037698.1| - 0.17 11.7 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family NucS PF01939.16 gi|313127429|ref|YP_004037699.1| - 7.8e-66 221.7 0.0 1e-65 221.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|313127429|ref|YP_004037699.1| - 0.0084 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DNA_photolyase PF00875.18 gi|313127429|ref|YP_004037699.1| - 0.02 14.9 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 DNA photolyase Pyridox_ox_2 PF12900.7 gi|313127430|ref|YP_004037700.1| - 4.9e-19 68.7 0.0 5.4e-19 68.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|313127430|ref|YP_004037700.1| - 1.7e-06 28.1 0.0 2.1e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase VanZ PF04892.12 gi|313127431|ref|YP_004037701.1| - 8.8e-10 39.3 0.9 1.8e-09 38.3 0.9 1.4 1 1 0 1 1 1 1 VanZ like family DUF2279 PF10043.9 gi|313127431|ref|YP_004037701.1| - 0.0011 19.7 0.1 0.0016 19.1 0.1 1.2 1 0 0 1 1 1 1 Predicted periplasmic lipoprotein (DUF2279) DUF2238 PF09997.9 gi|313127431|ref|YP_004037701.1| - 0.053 13.3 1.0 0.087 12.6 1.0 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) CSD PF00313.22 gi|313127432|ref|YP_004037702.1| - 3.1e-19 68.6 0.1 3.5e-19 68.4 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|313127432|ref|YP_004037702.1| - 0.041 13.6 2.4 0.055 13.2 2.4 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|313127432|ref|YP_004037702.1| - 0.1 12.5 0.3 0.14 12.1 0.3 1.4 1 1 0 1 1 1 0 S1-like ParBc PF02195.18 gi|313127433|ref|YP_004037703.1| - 0.0018 18.5 0.0 0.017 15.4 0.0 2.2 1 1 0 1 1 1 1 ParB-like nuclease domain TPR_21 PF09976.9 gi|313127434|ref|YP_004037704.1| - 0.14 11.8 0.4 0.19 11.4 0.4 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain CitMHS PF03600.16 gi|313127435|ref|YP_004037705.1| - 6.4 5.9 13.2 1.4 8.1 1.4 2.3 2 0 0 2 2 2 0 Citrate transporter Acetyltransf_1 PF00583.25 gi|313127436|ref|YP_004037706.1| - 1.2e-12 48.1 0.0 2.4e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|313127436|ref|YP_004037706.1| - 1.5e-09 38.2 0.1 2e-09 37.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313127436|ref|YP_004037706.1| - 7.5e-07 29.5 0.0 1.4e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|313127436|ref|YP_004037706.1| - 9.1e-06 25.7 0.2 3.4e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|313127436|ref|YP_004037706.1| - 2.3e-05 24.4 0.1 8.5e-05 22.6 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313127436|ref|YP_004037706.1| - 5.3e-05 23.2 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|313127436|ref|YP_004037706.1| - 0.00017 21.3 0.0 0.00028 20.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 gi|313127436|ref|YP_004037706.1| - 0.00049 20.8 0.1 0.00099 19.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|313127436|ref|YP_004037706.1| - 0.039 14.1 3.9 0.073 13.2 0.2 2.8 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.6 gi|313127436|ref|YP_004037706.1| - 0.073 12.9 0.0 0.22 11.4 0.0 1.8 1 0 0 1 1 1 0 UBA-like domain HAMP PF00672.25 gi|313127436|ref|YP_004037706.1| - 0.076 13.4 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 HAMP domain Acetyltransf_15 PF17013.5 gi|313127436|ref|YP_004037706.1| - 0.096 12.1 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative acetyl-transferase DUF11 PF01345.18 gi|313127438|ref|YP_004037708.1| - 0.003 17.8 1.0 0.003 17.8 1.0 2.1 2 1 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|313127438|ref|YP_004037708.1| - 0.0033 17.6 1.0 0.0033 17.6 1.0 2.3 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Arteri_nsp7a PF16749.5 gi|313127438|ref|YP_004037708.1| - 0.053 13.7 0.1 0.089 13.0 0.1 1.3 1 0 0 1 1 1 0 Arterivirus nonstructural protein 7 alpha LrgA PF03788.14 gi|313127440|ref|YP_004037710.1| - 0.051 13.5 0.1 0.074 13.0 0.1 1.2 1 0 0 1 1 1 0 LrgA family TOBE_2 PF08402.10 gi|313127441|ref|YP_004037711.1| - 0.53 10.5 2.4 0.59 10.3 0.1 2.5 4 0 0 4 4 4 0 TOBE domain DUF192 PF02643.15 gi|313127442|ref|YP_004037712.1| - 3.2e-30 104.1 0.0 4.1e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 ABC_membrane PF00664.23 gi|313127444|ref|YP_004037714.1| - 6.4e-38 131.0 5.2 1.3e-37 129.9 5.2 1.5 1 1 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|313127444|ref|YP_004037714.1| - 2e-37 128.8 0.0 3.6e-37 127.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|313127444|ref|YP_004037714.1| - 7.9e-05 23.0 0.1 0.00038 20.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|313127444|ref|YP_004037714.1| - 0.00056 19.7 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313127444|ref|YP_004037714.1| - 0.0021 17.4 0.0 0.004 16.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_21 PF13304.6 gi|313127444|ref|YP_004037714.1| - 0.0022 17.9 0.0 0.0067 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|313127444|ref|YP_004037714.1| - 0.0024 18.4 0.0 0.0077 16.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313127444|ref|YP_004037714.1| - 0.0027 18.1 0.2 0.0065 16.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313127444|ref|YP_004037714.1| - 0.0031 17.4 0.0 0.0057 16.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|313127444|ref|YP_004037714.1| - 0.0057 16.4 0.1 0.015 15.0 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313127444|ref|YP_004037714.1| - 0.006 16.0 0.9 0.19 11.2 0.2 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|313127444|ref|YP_004037714.1| - 0.014 15.8 0.0 0.085 13.3 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|313127444|ref|YP_004037714.1| - 0.025 14.3 0.3 0.069 12.9 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|313127444|ref|YP_004037714.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|313127444|ref|YP_004037714.1| - 0.14 11.8 0.1 0.65 9.7 0.1 2.0 1 1 0 1 1 1 0 Guanylate kinase AAA_5 PF07728.14 gi|313127444|ref|YP_004037714.1| - 0.15 12.1 0.1 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|313127444|ref|YP_004037714.1| - 0.17 10.6 0.1 0.35 9.6 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Creatininase PF02633.14 gi|313127445|ref|YP_004037715.1| - 5.2e-71 238.9 3.6 6e-71 238.7 3.6 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF883 PF05957.13 gi|313127446|ref|YP_004037716.1| - 0.003 18.1 6.0 0.49 11.0 0.1 2.8 3 1 0 3 3 3 2 Bacterial protein of unknown function (DUF883) TPR_MLP1_2 PF07926.12 gi|313127446|ref|YP_004037716.1| - 0.012 15.7 3.9 0.16 12.1 1.0 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Rap1_C PF11626.8 gi|313127446|ref|YP_004037716.1| - 0.02 15.0 0.1 0.037 14.1 0.1 1.5 1 0 0 1 1 1 0 TRF2-interacting telomeric protein/Rap1 - C terminal domain SlyX PF04102.12 gi|313127446|ref|YP_004037716.1| - 0.17 12.5 5.1 0.085 13.5 2.3 1.9 2 0 0 2 2 2 0 SlyX LPP PF04728.13 gi|313127446|ref|YP_004037716.1| - 0.18 12.2 0.7 0.18 12.2 0.7 3.2 3 1 1 4 4 4 0 Lipoprotein leucine-zipper DHNA PF04038.12 gi|313127447|ref|YP_004037717.1| - 5.9e-42 142.6 0.0 6.7e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Epimerase PF01370.21 gi|313127448|ref|YP_004037718.1| - 2.7e-20 72.9 0.0 3.5e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313127448|ref|YP_004037718.1| - 3.8e-15 55.6 0.0 4.7e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|313127448|ref|YP_004037718.1| - 4.8e-11 42.9 0.0 8.2e-11 42.1 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|313127448|ref|YP_004037718.1| - 1.3e-10 40.9 0.2 1e-07 31.4 0.3 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|313127448|ref|YP_004037718.1| - 6.4e-10 38.9 0.0 1.2e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|313127448|ref|YP_004037718.1| - 2.1e-09 37.0 0.0 1.2e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|313127448|ref|YP_004037718.1| - 3.8e-05 23.4 0.0 5.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|313127448|ref|YP_004037718.1| - 0.00017 20.8 0.0 0.00033 19.8 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 gi|313127448|ref|YP_004037718.1| - 0.00041 20.6 0.0 0.00074 19.8 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|313127448|ref|YP_004037718.1| - 0.2 11.1 0.0 0.5 9.8 0.0 1.6 2 0 0 2 2 2 0 short chain dehydrogenase DUF309 PF03745.14 gi|313127449|ref|YP_004037719.1| - 3.9e-19 68.1 2.6 5.8e-19 67.5 2.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Citrate_synt PF00285.21 gi|313127450|ref|YP_004037720.1| - 7.6e-126 420.0 0.0 8.7e-126 419.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain GGACT PF06094.12 gi|313127451|ref|YP_004037721.1| - 8e-11 42.6 0.1 1e-10 42.2 0.1 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|313127451|ref|YP_004037721.1| - 0.046 14.1 0.0 0.07 13.5 0.0 1.3 1 0 0 1 1 1 0 AIG2-like family PALP PF00291.25 gi|313127452|ref|YP_004037722.1| - 5.1e-86 288.7 5.4 6.1e-86 288.5 5.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|313127452|ref|YP_004037722.1| - 3.8e-06 27.4 2.3 2e-05 25.1 0.1 2.9 3 1 1 4 4 4 1 ACT domain ACT PF01842.25 gi|313127452|ref|YP_004037722.1| - 4.6e-05 23.1 0.5 0.00016 21.3 0.0 2.3 2 0 0 2 2 2 1 ACT domain CagE_TrbE_VirB PF03135.14 gi|313127452|ref|YP_004037722.1| - 0.0018 18.4 0.0 0.0036 17.4 0.0 1.4 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system DegT_DnrJ_EryC1 PF01041.17 gi|313127452|ref|YP_004037722.1| - 0.0036 16.6 0.1 0.014 14.7 0.1 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cyt_bd_oxida_I PF01654.17 gi|313127453|ref|YP_004037723.1| - 5.3e-143 476.6 27.6 6e-143 476.4 27.6 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I JSRP PF15312.6 gi|313127453|ref|YP_004037723.1| - 0.0036 17.2 0.0 0.0091 15.9 0.0 1.7 1 0 0 1 1 1 1 Junctional sarcoplasmic reticulum protein Cyt_bd_oxida_II PF02322.15 gi|313127454|ref|YP_004037724.1| - 1.4e-73 247.9 33.1 1.6e-73 247.7 33.1 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II TMEM144 PF07857.12 gi|313127454|ref|YP_004037724.1| - 0.021 13.8 0.7 0.021 13.8 0.7 2.3 2 1 1 3 3 3 0 Transmembrane family, TMEM144 of transporters PTR2 PF00854.21 gi|313127454|ref|YP_004037724.1| - 3.3 6.4 7.5 7.3 5.3 0.5 2.8 2 1 1 3 3 3 0 POT family Ribonuc_L-PSP PF01042.21 gi|313127455|ref|YP_004037725.1| - 1.7e-38 131.3 0.0 1.9e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|313127455|ref|YP_004037725.1| - 0.062 13.4 0.0 0.074 13.2 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease DUF5493 PF17597.2 gi|313127456|ref|YP_004037726.1| - 0.041 14.1 1.8 0.083 13.2 1.7 1.6 1 1 1 2 2 2 0 Family of unknown function (DUF5493) Cpn60_TCP1 PF00118.24 gi|313127459|ref|YP_004037729.1| - 2.3e-166 554.3 15.6 2.6e-166 554.1 15.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF1451 PF07295.11 gi|313127459|ref|YP_004037729.1| - 5.3 7.1 6.9 2.2 8.3 1.2 2.6 2 1 0 2 2 2 0 Zinc-ribbon containing domain OCD_Mu_crystall PF02423.15 gi|313127460|ref|YP_004037730.1| - 4.3e-99 331.4 0.8 5e-99 331.2 0.8 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DUF2975 PF11188.8 gi|313127461|ref|YP_004037731.1| - 0.045 13.6 0.1 0.049 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) tRNA-synt_1 PF00133.22 gi|313127462|ref|YP_004037732.1| - 9.4e-53 179.4 0.9 1.4e-39 135.8 0.1 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|313127462|ref|YP_004037732.1| - 3e-22 78.9 4.8 2.2e-10 39.9 0.1 3.5 3 2 1 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|313127462|ref|YP_004037732.1| - 1.8e-21 76.7 0.1 4.4e-21 75.4 0.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|313127462|ref|YP_004037732.1| - 1.2e-08 34.7 0.0 2.4e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|313127462|ref|YP_004037732.1| - 0.00012 21.6 0.0 0.39 10.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|313127462|ref|YP_004037732.1| - 0.00055 19.0 0.0 0.012 14.5 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) FlxA PF14282.6 gi|313127462|ref|YP_004037732.1| - 0.34 10.9 1.1 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 FlxA-like protein HSP20 PF00011.21 gi|313127463|ref|YP_004037733.1| - 1.2e-20 73.6 0.3 1.6e-20 73.1 0.3 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|313127463|ref|YP_004037733.1| - 1.1e-14 53.7 0.0 1.9e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|313127463|ref|YP_004037733.1| - 1.2e-05 25.4 1.3 0.00013 22.1 1.3 2.1 1 1 1 2 2 2 1 GvpH CS PF04969.16 gi|313127463|ref|YP_004037733.1| - 0.084 13.9 0.0 0.11 13.5 0.0 1.2 1 0 0 1 1 1 0 CS domain FKBP26_C PF18046.1 gi|313127463|ref|YP_004037733.1| - 0.13 12.4 0.0 13 5.9 0.0 2.3 2 0 0 2 2 2 0 FKBP26_C-terminal HSP20 PF00011.21 gi|313127464|ref|YP_004037734.1| - 1.4e-22 79.7 0.8 1.7e-22 79.5 0.8 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|313127464|ref|YP_004037734.1| - 2.2e-17 62.3 0.0 3.1e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|313127464|ref|YP_004037734.1| - 0.0031 18.5 0.0 0.0041 18.1 0.0 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|313127464|ref|YP_004037734.1| - 0.043 13.9 3.9 0.14 12.2 3.6 1.9 1 1 0 1 1 1 0 GvpH FAM110_C PF14160.6 gi|313127464|ref|YP_004037734.1| - 0.34 12.0 2.4 0.67 11.0 2.4 1.5 1 1 0 1 1 1 0 Centrosome-associated C terminus PDT PF00800.18 gi|313127465|ref|YP_004037735.1| - 1e-46 159.0 0.2 1.3e-46 158.7 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|313127465|ref|YP_004037735.1| - 1.5e-06 27.8 0.0 4.9e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 ACT domain TIP39 PF14980.6 gi|313127465|ref|YP_004037735.1| - 0.1 12.5 0.2 0.27 11.1 0.2 1.6 1 0 0 1 1 1 0 TIP39 peptide GATase PF00117.28 gi|313127466|ref|YP_004037736.1| - 1.5e-24 86.8 0.0 1.8e-24 86.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|313127466|ref|YP_004037736.1| - 2.5e-09 37.0 0.0 5.3e-09 36.0 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|313127466|ref|YP_004037736.1| - 1e-07 32.0 0.0 0.00038 20.3 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|313127466|ref|YP_004037736.1| - 6e-06 26.2 0.3 5.1e-05 23.1 0.3 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|313127466|ref|YP_004037736.1| - 0.00017 21.5 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Phosphonate-bd PF12974.7 gi|313127467|ref|YP_004037737.1| - 6.3e-66 222.4 0.7 7.5e-66 222.2 0.7 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|313127467|ref|YP_004037737.1| - 6.9e-05 22.5 1.6 6.9e-05 22.5 1.6 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence NMT1 PF09084.11 gi|313127467|ref|YP_004037737.1| - 0.00034 20.6 0.1 0.00062 19.8 0.1 1.3 1 0 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.12 gi|313127467|ref|YP_004037737.1| - 0.045 13.3 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system ABC_tran PF00005.27 gi|313127468|ref|YP_004037738.1| - 5.4e-34 117.7 0.0 7.3e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313127468|ref|YP_004037738.1| - 5.6e-07 29.7 0.1 0.0054 16.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|313127468|ref|YP_004037738.1| - 4.2e-06 26.8 0.0 7.1e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|313127468|ref|YP_004037738.1| - 3.9e-05 24.1 0.1 6.1e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|313127468|ref|YP_004037738.1| - 0.00062 19.4 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313127468|ref|YP_004037738.1| - 0.00074 19.0 0.0 0.11 11.9 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|313127468|ref|YP_004037738.1| - 0.0032 16.8 0.0 0.0057 16.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.23 gi|313127468|ref|YP_004037738.1| - 0.0034 17.5 0.2 0.16 12.0 0.1 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|313127468|ref|YP_004037738.1| - 0.0039 17.7 0.0 0.0073 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313127468|ref|YP_004037738.1| - 0.011 16.0 0.2 0.03 14.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|313127468|ref|YP_004037738.1| - 0.021 13.7 0.0 0.029 13.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_25 PF13481.6 gi|313127468|ref|YP_004037738.1| - 0.029 14.0 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|313127468|ref|YP_004037738.1| - 0.052 13.8 0.4 1.9 8.8 0.4 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|313127468|ref|YP_004037738.1| - 0.059 12.8 0.0 0.087 12.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|313127468|ref|YP_004037738.1| - 0.069 12.9 0.1 0.13 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|313127468|ref|YP_004037738.1| - 0.11 11.6 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Ret2_MD PF18528.1 gi|313127468|ref|YP_004037738.1| - 0.12 12.7 0.2 0.3 11.5 0.1 1.9 2 0 0 2 2 1 0 RNA editing 3' terminal uridylyl transferase 2 middle domain NACHT PF05729.12 gi|313127468|ref|YP_004037738.1| - 0.15 11.9 0.1 0.4 10.6 0.1 1.7 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|313127468|ref|YP_004037738.1| - 0.18 10.4 0.0 5.1 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain UDG PF03167.19 gi|313127470|ref|YP_004037740.1| - 8.8e-38 129.7 0.0 9.9e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF1127 PF06568.11 gi|313127470|ref|YP_004037740.1| - 0.1 12.4 0.9 0.27 11.0 0.9 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) DUF99 PF01949.16 gi|313127471|ref|YP_004037741.1| - 1.4e-58 197.3 0.1 1.8e-58 197.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Imm1 PF14430.6 gi|313127471|ref|YP_004037741.1| - 0.034 14.8 0.1 0.05 14.3 0.1 1.4 1 0 0 1 1 1 0 Immunity protein Imm1 Tom22 PF04281.13 gi|313127472|ref|YP_004037742.1| - 0.71 9.7 5.3 0.84 9.4 5.3 1.0 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 Lactamase_B PF00753.27 gi|313127473|ref|YP_004037743.1| - 1e-16 61.5 6.8 9.2e-15 55.2 6.8 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313127473|ref|YP_004037743.1| - 6e-06 25.9 2.9 8.8e-06 25.4 2.7 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|313127473|ref|YP_004037743.1| - 0.018 14.5 0.0 0.035 13.6 0.0 1.5 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|313127473|ref|YP_004037743.1| - 0.057 13.3 0.9 0.17 11.8 0.9 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ribosomal_L40e PF01020.17 gi|313127474|ref|YP_004037744.1| - 2.3e-08 33.8 7.2 2.8e-08 33.5 7.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|313127474|ref|YP_004037744.1| - 9.9e-05 21.9 2.4 0.00014 21.4 2.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|313127474|ref|YP_004037744.1| - 0.00076 19.5 1.5 0.00081 19.4 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|313127474|ref|YP_004037744.1| - 0.0011 18.3 2.3 0.0013 18.1 2.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-CHY PF05495.12 gi|313127474|ref|YP_004037744.1| - 0.0064 17.0 1.4 0.0067 16.9 1.4 1.1 1 0 0 1 1 1 1 CHY zinc finger DHHC PF01529.20 gi|313127474|ref|YP_004037744.1| - 0.045 13.9 2.0 0.048 13.8 2.0 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DNA_RNApol_7kD PF03604.13 gi|313127474|ref|YP_004037744.1| - 0.055 13.2 5.2 0.13 12.0 5.2 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.18 gi|313127474|ref|YP_004037744.1| - 0.2 11.0 4.9 0.71 9.2 4.9 1.9 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others RNA_POL_M_15KD PF02150.16 gi|313127474|ref|YP_004037744.1| - 0.33 10.9 4.7 0.79 9.6 0.9 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.19 gi|313127474|ref|YP_004037744.1| - 0.45 10.7 6.3 0.64 10.2 6.3 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e Thioredoxin PF00085.20 gi|313127475|ref|YP_004037745.1| - 6.7e-23 80.6 0.0 7.6e-23 80.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|313127475|ref|YP_004037745.1| - 6.5e-08 33.0 0.4 4.1e-07 30.4 0.4 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|313127475|ref|YP_004037745.1| - 6e-06 26.1 0.0 6.8e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|313127475|ref|YP_004037745.1| - 7.4e-06 26.2 0.0 0.011 16.0 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Glutaredoxin PF00462.24 gi|313127475|ref|YP_004037745.1| - 0.00015 22.0 0.3 0.0004 20.5 0.1 1.7 1 1 1 2 2 2 1 Glutaredoxin Redoxin PF08534.10 gi|313127475|ref|YP_004037745.1| - 0.00019 21.2 0.4 0.011 15.5 0.0 2.0 1 1 1 2 2 2 1 Redoxin Thioredoxin_3 PF13192.6 gi|313127475|ref|YP_004037745.1| - 0.00022 21.2 0.0 0.00027 20.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|313127475|ref|YP_004037745.1| - 0.0004 20.3 0.0 0.00043 20.2 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein AhpC-TSA PF00578.21 gi|313127475|ref|YP_004037745.1| - 0.0012 18.8 0.3 0.013 15.4 0.3 1.9 1 1 0 1 1 1 1 AhpC/TSA family DSBA PF01323.20 gi|313127475|ref|YP_004037745.1| - 0.0015 18.4 0.2 0.089 12.6 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain DUF836 PF05768.14 gi|313127475|ref|YP_004037745.1| - 0.0045 17.4 0.2 0.0053 17.1 0.2 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DUF1947 PF09183.10 gi|313127475|ref|YP_004037745.1| - 0.015 15.6 0.4 0.021 15.1 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) Thioredoxin_5 PF13743.6 gi|313127475|ref|YP_004037745.1| - 0.056 13.1 0.2 0.091 12.4 0.1 1.5 1 1 1 2 2 2 0 Thioredoxin HyaE PF07449.11 gi|313127475|ref|YP_004037745.1| - 0.077 13.0 0.0 0.092 12.7 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|313127475|ref|YP_004037745.1| - 0.17 11.2 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Sec61_beta PF03911.16 gi|313127476|ref|YP_004037746.1| - 1.4e-16 60.2 0.1 2e-16 59.7 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family SNO PF01174.19 gi|313127477|ref|YP_004037747.1| - 7e-55 185.8 0.0 7.8e-55 185.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|313127477|ref|YP_004037747.1| - 5.7e-11 42.4 0.0 1.2e-10 41.3 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|313127477|ref|YP_004037747.1| - 1.3e-06 28.2 0.0 1.7e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|313127477|ref|YP_004037747.1| - 0.00034 20.5 0.0 0.00051 19.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|313127477|ref|YP_004037747.1| - 0.0053 16.5 0.0 0.033 14.0 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I BPL_N PF09825.9 gi|313127477|ref|YP_004037747.1| - 0.0067 15.6 0.0 0.033 13.3 0.0 1.9 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal ThiJ_like PF17124.5 gi|313127477|ref|YP_004037747.1| - 0.16 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 ThiJ/PfpI family-like DUF4154 PF13689.6 gi|313127477|ref|YP_004037747.1| - 0.19 11.9 0.0 0.37 11.0 0.0 1.4 1 0 0 1 1 1 0 YfiR/HmsC-like PRA-PH PF01503.17 gi|313127478|ref|YP_004037748.1| - 1.9e-14 53.9 1.9 2.2e-14 53.7 1.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|313127478|ref|YP_004037748.1| - 0.12 12.6 2.8 0.19 11.9 2.8 1.3 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain Calpain_inhib PF00748.19 gi|313127478|ref|YP_004037748.1| - 0.15 12.5 0.1 0.15 12.5 0.1 1.9 2 0 0 2 2 2 0 Calpain inhibitor F420_oxidored PF03807.17 gi|313127480|ref|YP_004037750.1| - 5.6e-22 78.2 0.0 9.6e-22 77.4 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|313127480|ref|YP_004037750.1| - 6.9e-05 23.1 0.0 0.00014 22.1 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PDH PF02153.17 gi|313127480|ref|YP_004037750.1| - 0.0018 17.4 0.1 0.0022 17.1 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase KR PF08659.10 gi|313127480|ref|YP_004037750.1| - 0.0045 16.9 0.4 0.033 14.1 0.0 2.1 2 0 0 2 2 2 1 KR domain NAD_Gly3P_dh_N PF01210.23 gi|313127480|ref|YP_004037750.1| - 0.023 14.7 0.0 0.048 13.6 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.24 gi|313127480|ref|YP_004037750.1| - 0.024 15.1 0.0 0.033 14.6 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|313127480|ref|YP_004037750.1| - 0.025 15.4 0.0 0.051 14.4 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|313127480|ref|YP_004037750.1| - 0.039 13.6 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Phage_holin_2_4 PF16082.5 gi|313127482|ref|YP_004037752.1| - 1.7 8.4 3.7 2.7 7.8 0.7 2.2 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Hydrolase PF00702.26 gi|313127483|ref|YP_004037753.1| - 1.5e-09 38.5 0.3 6.3e-09 36.4 0.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|313127483|ref|YP_004037753.1| - 1.9e-08 34.6 0.0 8.8e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313127483|ref|YP_004037753.1| - 6.2e-05 23.0 0.7 0.00025 21.1 0.7 2.0 1 1 0 1 1 1 1 HAD-hyrolase-like UPF0146 PF03686.13 gi|313127484|ref|YP_004037754.1| - 1.5e-19 70.1 0.0 2.2e-19 69.6 0.0 1.2 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.11 gi|313127485|ref|YP_004037755.1| - 8.5e-23 81.4 0.0 1.1e-22 81.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|313127485|ref|YP_004037755.1| - 8.1e-06 25.6 0.0 9.9e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|313127485|ref|YP_004037755.1| - 4.6e-05 23.3 0.0 4.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin DUF4953 PF16313.5 gi|313127485|ref|YP_004037755.1| - 0.00012 21.4 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Met-zincin Reprolysin_2 PF13574.6 gi|313127485|ref|YP_004037755.1| - 0.00035 20.5 0.0 0.00039 20.4 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|313127485|ref|YP_004037755.1| - 0.00037 21.0 0.0 0.00044 20.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|313127485|ref|YP_004037755.1| - 0.00041 20.5 0.1 0.00045 20.4 0.1 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Metallopep PF12044.8 gi|313127485|ref|YP_004037755.1| - 0.022 13.4 0.3 0.029 13.0 0.3 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M57 PF12388.8 gi|313127485|ref|YP_004037755.1| - 0.023 14.3 1.0 0.058 13.0 0.4 1.8 1 1 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Zincin_1 PF06262.11 gi|313127485|ref|YP_004037755.1| - 0.03 14.4 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Zincin-like metallopeptidase Peptidase_M66 PF10462.9 gi|313127485|ref|YP_004037755.1| - 0.032 13.2 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.13 gi|313127485|ref|YP_004037755.1| - 0.044 13.7 0.1 0.083 12.8 0.1 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin PF01421.19 gi|313127485|ref|YP_004037755.1| - 0.059 13.3 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Usp PF00582.26 gi|313127486|ref|YP_004037756.1| - 5.9e-29 101.4 1.6 6.4e-29 101.3 1.6 1.0 1 0 0 1 1 1 1 Universal stress protein family RTC PF01137.21 gi|313127487|ref|YP_004037757.1| - 5.8e-67 225.1 0.0 8e-67 224.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|313127487|ref|YP_004037757.1| - 1.4e-11 44.8 0.9 4.3e-11 43.3 0.9 1.8 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Fucose_iso_N1 PF07881.12 gi|313127487|ref|YP_004037757.1| - 0.25 11.2 1.4 5.1 6.9 0.1 2.3 1 1 1 2 2 2 0 L-fucose isomerase, first N-terminal domain ABC_tran PF00005.27 gi|313127488|ref|YP_004037758.1| - 4.6e-41 140.5 0.0 7e-20 71.9 0.0 2.8 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|313127488|ref|YP_004037758.1| - 4.7e-15 55.6 1.5 0.00032 20.2 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|313127488|ref|YP_004037758.1| - 2.7e-12 46.3 0.7 5.6e-12 45.3 0.7 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|313127488|ref|YP_004037758.1| - 6.9e-11 42.5 6.8 0.069 12.9 0.2 4.3 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313127488|ref|YP_004037758.1| - 9.2e-08 32.6 0.3 0.012 16.0 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|313127488|ref|YP_004037758.1| - 8.3e-07 29.7 1.4 0.057 13.9 0.9 2.5 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|313127488|ref|YP_004037758.1| - 4.4e-06 27.2 0.0 0.035 14.5 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|313127488|ref|YP_004037758.1| - 1.5e-05 25.3 0.0 0.015 15.5 0.0 2.8 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|313127488|ref|YP_004037758.1| - 6.1e-05 22.3 0.0 0.21 10.8 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.6 gi|313127488|ref|YP_004037758.1| - 8.3e-05 22.4 0.5 0.1 12.3 0.1 2.5 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|313127488|ref|YP_004037758.1| - 0.00011 21.9 0.2 0.43 10.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|313127488|ref|YP_004037758.1| - 0.00015 21.8 0.1 1.5 8.9 0.0 3.5 3 1 1 4 4 4 2 AAA domain RNA_helicase PF00910.22 gi|313127488|ref|YP_004037758.1| - 0.00026 21.4 0.0 1.4 9.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.12 gi|313127488|ref|YP_004037758.1| - 0.00055 19.9 0.0 0.65 9.9 0.0 2.5 2 0 0 2 2 2 2 NACHT domain ATPase_2 PF01637.18 gi|313127488|ref|YP_004037758.1| - 0.00075 19.5 0.0 0.18 11.7 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|313127488|ref|YP_004037758.1| - 0.00084 19.1 0.1 1.5 8.4 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain Fer4 PF00037.27 gi|313127488|ref|YP_004037758.1| - 0.00087 19.0 2.4 0.00087 19.0 2.4 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|313127488|ref|YP_004037758.1| - 0.00088 19.2 0.0 0.73 9.7 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|313127488|ref|YP_004037758.1| - 0.0014 18.8 0.2 2.4 8.3 0.3 3.1 2 1 1 3 3 3 1 AAA domain Rad17 PF03215.15 gi|313127488|ref|YP_004037758.1| - 0.0017 18.3 0.0 0.69 9.8 0.0 2.5 2 1 1 3 3 2 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|313127488|ref|YP_004037758.1| - 0.0022 18.3 1.6 0.36 11.0 0.0 3.2 3 0 0 3 3 3 1 AAA domain MukB PF04310.12 gi|313127488|ref|YP_004037758.1| - 0.0043 16.9 0.4 4.6 7.0 0.2 2.7 2 1 1 3 3 3 0 MukB N-terminal Fer4_6 PF12837.7 gi|313127488|ref|YP_004037758.1| - 0.0046 17.0 12.7 0.086 12.9 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_18 PF13238.6 gi|313127488|ref|YP_004037758.1| - 0.018 15.6 0.1 3.4 8.2 0.0 2.8 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|313127488|ref|YP_004037758.1| - 0.023 14.4 0.1 12 5.6 0.0 2.9 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 gi|313127488|ref|YP_004037758.1| - 0.025 14.5 1.1 13 5.6 0.0 3.5 4 0 0 4 4 4 0 NTPase Fer4_7 PF12838.7 gi|313127488|ref|YP_004037758.1| - 0.03 14.9 8.7 0.068 13.8 8.7 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain SRP54 PF00448.22 gi|313127488|ref|YP_004037758.1| - 0.038 13.6 0.1 2.4 7.7 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|313127488|ref|YP_004037758.1| - 0.044 13.8 0.0 8.2 6.4 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|313127488|ref|YP_004037758.1| - 0.045 13.8 0.0 26 4.9 0.0 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|313127488|ref|YP_004037758.1| - 0.075 12.8 1.0 3.5 7.3 0.1 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|313127488|ref|YP_004037758.1| - 0.14 11.7 6.3 20 4.7 0.0 3.7 4 0 0 4 4 4 0 AAA domain AAA_27 PF13514.6 gi|313127488|ref|YP_004037758.1| - 0.14 11.7 0.0 6 6.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain Fer4_10 PF13237.6 gi|313127488|ref|YP_004037758.1| - 0.31 11.2 10.9 0.62 10.2 1.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313127488|ref|YP_004037758.1| - 0.32 11.2 9.0 0.63 10.3 9.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_30 PF13604.6 gi|313127488|ref|YP_004037758.1| - 0.34 10.6 2.5 8.3 6.1 0.1 2.9 3 0 0 3 3 3 0 AAA domain Fer4_2 PF12797.7 gi|313127488|ref|YP_004037758.1| - 0.84 9.9 11.7 0.24 11.6 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|313127488|ref|YP_004037758.1| - 1.4 9.1 6.8 2.8 8.1 6.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313127488|ref|YP_004037758.1| - 1.9 9.5 8.9 1.1 10.3 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF1634 PF07843.11 gi|313127489|ref|YP_004037759.1| - 0.0068 16.5 3.2 0.011 15.8 3.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) HTH_27 PF13463.6 gi|313127490|ref|YP_004037760.1| - 0.00079 19.9 0.0 0.00097 19.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|313127490|ref|YP_004037760.1| - 0.0024 17.4 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|313127490|ref|YP_004037760.1| - 0.014 15.0 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|313127490|ref|YP_004037760.1| - 0.016 15.1 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Dimerisation2 PF16864.5 gi|313127490|ref|YP_004037760.1| - 0.016 15.1 0.0 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 Dimerisation domain MarR_2 PF12802.7 gi|313127490|ref|YP_004037760.1| - 0.026 14.4 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|313127490|ref|YP_004037760.1| - 0.042 13.8 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|313127490|ref|YP_004037760.1| - 0.047 13.6 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.12 gi|313127490|ref|YP_004037760.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 HTH domain PaaX PF07848.12 gi|313127490|ref|YP_004037760.1| - 0.15 12.3 0.1 0.22 11.8 0.1 1.2 1 0 0 1 1 1 0 PaaX-like protein T2SSE PF00437.20 gi|313127491|ref|YP_004037761.1| - 3e-13 49.4 0.4 1.9e-12 46.8 0.2 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|313127491|ref|YP_004037761.1| - 4.4e-05 23.2 0.1 0.00011 21.9 0.1 1.7 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.6 gi|313127491|ref|YP_004037761.1| - 5.5e-05 23.6 0.1 0.00027 21.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|313127491|ref|YP_004037761.1| - 0.00037 20.2 0.0 0.0013 18.4 0.0 1.9 1 1 0 1 1 1 1 Thymidylate kinase NTPase_1 PF03266.15 gi|313127491|ref|YP_004037761.1| - 0.0014 18.5 0.0 0.0037 17.2 0.0 1.7 1 0 0 1 1 1 1 NTPase KH_2 PF07650.17 gi|313127491|ref|YP_004037761.1| - 0.005 16.6 1.3 0.014 15.2 1.3 1.7 1 0 0 1 1 1 1 KH domain AAA_33 PF13671.6 gi|313127491|ref|YP_004037761.1| - 0.0078 16.4 0.0 0.039 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|313127491|ref|YP_004037761.1| - 0.0085 15.4 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 gi|313127491|ref|YP_004037761.1| - 0.0089 15.8 0.0 0.031 14.0 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|313127491|ref|YP_004037761.1| - 0.0093 15.7 0.1 0.026 14.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain KTI12 PF08433.10 gi|313127491|ref|YP_004037761.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|313127491|ref|YP_004037761.1| - 0.011 16.3 0.0 0.038 14.5 0.0 2.0 1 0 0 1 1 1 0 AAA domain FliMN_C PF01052.20 gi|313127491|ref|YP_004037761.1| - 0.011 15.7 1.4 0.44 10.6 0.1 3.0 3 0 0 3 3 3 0 Type III flagellar switch regulator (C-ring) FliN C-term AAA_7 PF12775.7 gi|313127491|ref|YP_004037761.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PIN PF01850.21 gi|313127491|ref|YP_004037761.1| - 0.013 16.0 0.0 0.037 14.5 0.0 1.9 1 0 0 1 1 1 0 PIN domain AAA_5 PF07728.14 gi|313127491|ref|YP_004037761.1| - 0.02 14.9 0.0 0.05 13.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313127491|ref|YP_004037761.1| - 0.022 15.2 0.0 0.054 13.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|313127491|ref|YP_004037761.1| - 0.022 14.6 0.0 0.054 13.3 0.0 1.6 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.17 gi|313127491|ref|YP_004037761.1| - 0.025 14.3 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|313127491|ref|YP_004037761.1| - 0.025 14.8 0.0 0.08 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain PIN_4 PF13638.6 gi|313127491|ref|YP_004037761.1| - 0.05 13.9 0.0 0.15 12.4 0.0 1.9 1 0 0 1 1 1 0 PIN domain NACHT PF05729.12 gi|313127491|ref|YP_004037761.1| - 0.051 13.5 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|313127491|ref|YP_004037761.1| - 0.053 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|313127491|ref|YP_004037761.1| - 0.054 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|313127491|ref|YP_004037761.1| - 0.075 12.9 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase Sigma54_activat PF00158.26 gi|313127491|ref|YP_004037761.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|313127491|ref|YP_004037761.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|313127491|ref|YP_004037761.1| - 0.13 12.8 0.0 0.33 11.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|313127491|ref|YP_004037761.1| - 0.15 12.5 0.0 0.38 11.2 0.0 1.8 1 0 0 1 1 1 0 RNA helicase KH_4 PF13083.6 gi|313127491|ref|YP_004037761.1| - 0.19 11.6 2.1 0.38 10.7 0.6 2.4 2 0 0 2 2 2 0 KH domain MCPsignal PF00015.21 gi|313127492|ref|YP_004037762.1| - 4.1e-41 140.7 52.6 8.9e-40 136.3 26.1 4.0 2 2 1 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|313127492|ref|YP_004037762.1| - 4.2e-15 55.9 14.4 4.9e-13 49.2 0.1 6.0 5 1 1 6 6 6 2 HAMP domain DUF948 PF06103.11 gi|313127492|ref|YP_004037762.1| - 4.7e-06 26.8 36.5 0.00049 20.3 5.4 6.6 2 2 4 6 6 6 2 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.6 gi|313127492|ref|YP_004037762.1| - 6.7e-05 23.2 0.2 2 8.8 0.0 4.9 4 1 1 5 5 4 1 Syntaxin-like protein DUF1664 PF07889.12 gi|313127492|ref|YP_004037762.1| - 0.00064 19.7 27.1 0.039 14.0 3.9 5.5 3 2 3 6 6 6 2 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|313127492|ref|YP_004037762.1| - 0.00065 19.7 32.6 0.26 11.3 2.2 4.9 3 2 2 5 5 5 4 Laminin Domain II BLOC1_2 PF10046.9 gi|313127492|ref|YP_004037762.1| - 0.002 18.4 23.0 0.51 10.7 0.9 4.9 3 2 2 5 5 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|313127492|ref|YP_004037762.1| - 0.0055 17.2 12.0 3.8 8.0 0.6 4.5 2 1 2 4 4 4 1 Protein of unknown function DUF16 DASH_Dam1 PF08653.10 gi|313127492|ref|YP_004037762.1| - 0.0058 16.4 3.5 9.6 6.1 0.0 5.5 6 0 0 6 6 6 0 DASH complex subunit Dam1 Spectrin PF00435.21 gi|313127492|ref|YP_004037762.1| - 0.019 15.4 18.5 0.027 15.0 2.9 4.7 2 2 2 5 5 5 0 Spectrin repeat Snapin_Pallidin PF14712.6 gi|313127492|ref|YP_004037762.1| - 0.024 15.0 9.0 7.2 7.1 0.3 4.6 4 1 1 5 5 4 0 Snapin/Pallidin Seryl_tRNA_N PF02403.22 gi|313127492|ref|YP_004037762.1| - 0.025 14.8 24.0 0.026 14.7 0.8 4.6 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Syntaxin-6_N PF09177.11 gi|313127492|ref|YP_004037762.1| - 0.032 14.8 26.4 0.034 14.7 10.6 4.0 3 2 1 4 4 3 0 Syntaxin 6, N-terminal HisKA PF00512.25 gi|313127492|ref|YP_004037762.1| - 0.033 14.2 5.2 2.2 8.4 0.0 4.9 3 1 1 4 4 4 0 His Kinase A (phospho-acceptor) domain SnoaL_2 PF12680.7 gi|313127492|ref|YP_004037762.1| - 0.04 14.6 0.7 0.04 14.6 0.7 3.8 3 2 1 4 4 4 0 SnoaL-like domain SKA1 PF07160.12 gi|313127492|ref|YP_004037762.1| - 0.042 13.7 9.3 0.075 12.9 4.0 2.5 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 IFT57 PF10498.9 gi|313127492|ref|YP_004037762.1| - 0.046 12.7 13.7 1 8.3 0.4 2.7 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|313127492|ref|YP_004037762.1| - 0.14 12.4 15.6 4.1 7.6 1.1 4.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family HMMR_N PF15905.5 gi|313127492|ref|YP_004037762.1| - 0.19 11.2 14.6 1.3 8.4 0.9 2.5 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal GAT PF03127.14 gi|313127492|ref|YP_004037762.1| - 0.41 11.0 4.3 3.3 8.1 0.1 4.1 2 1 2 4 4 4 0 GAT domain DASH_Hsk3 PF08227.11 gi|313127492|ref|YP_004037762.1| - 0.51 10.7 2.0 1 9.8 0.1 2.6 3 0 0 3 3 1 0 DASH complex subunit Hsk3 like TMPIT PF07851.13 gi|313127492|ref|YP_004037762.1| - 0.54 9.5 10.3 0.67 9.1 0.2 2.9 2 1 0 2 2 2 0 TMPIT-like protein TBK1_CCD1 PF18394.1 gi|313127492|ref|YP_004037762.1| - 0.55 9.7 6.7 5.5 6.5 0.2 2.7 2 1 0 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 Phage_GP20 PF06810.11 gi|313127492|ref|YP_004037762.1| - 0.85 9.4 19.6 0.042 13.7 5.6 3.7 3 2 1 4 4 4 0 Phage minor structural protein GP20 CorA PF01544.18 gi|313127492|ref|YP_004037762.1| - 1.6 8.0 18.0 0.94 8.7 5.7 3.8 2 1 1 4 4 4 0 CorA-like Mg2+ transporter protein BAR_2 PF10455.9 gi|313127492|ref|YP_004037762.1| - 1.6 7.8 11.1 0.37 9.9 2.0 3.2 3 0 0 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking NPV_P10 PF05531.12 gi|313127492|ref|YP_004037762.1| - 1.7 9.1 24.4 10 6.7 0.8 5.9 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein YkyA PF10368.9 gi|313127492|ref|YP_004037762.1| - 2.1 8.0 27.0 0.088 12.5 2.1 4.2 1 1 1 3 3 3 0 Putative cell-wall binding lipoprotein DUF2203 PF09969.9 gi|313127492|ref|YP_004037762.1| - 2.1 9.1 26.6 5.7 7.7 1.2 4.9 3 2 3 6 6 5 0 Uncharacterized conserved protein (DUF2203) STAT_alpha PF01017.20 gi|313127492|ref|YP_004037762.1| - 2.2 8.2 5.4 2.5 8.0 0.7 3.1 3 1 0 3 3 2 0 STAT protein, all-alpha domain Baculo_PEP_C PF04513.12 gi|313127492|ref|YP_004037762.1| - 2.6 8.1 18.8 1.7 8.7 2.3 4.1 3 3 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Ferritin PF00210.24 gi|313127492|ref|YP_004037762.1| - 3.4 7.6 19.8 0.059 13.3 3.1 4.4 2 2 2 4 4 4 0 Ferritin-like domain V_ATPase_I PF01496.19 gi|313127492|ref|YP_004037762.1| - 5.1 4.9 17.5 0.94 7.3 1.8 2.5 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family HAP1_N PF04849.13 gi|313127492|ref|YP_004037762.1| - 6.1 6.0 21.2 11 5.2 1.6 3.3 2 2 1 3 3 3 0 HAP1 N-terminal conserved region Nup88 PF10168.9 gi|313127492|ref|YP_004037762.1| - 6.2 4.5 12.9 2.4 5.8 0.3 2.5 2 1 1 3 3 3 0 Nuclear pore component Spc7 PF08317.11 gi|313127492|ref|YP_004037762.1| - 6.3 5.6 28.4 1.5 7.6 1.9 3.4 2 1 2 4 4 4 0 Spc7 kinetochore protein Exonuc_VII_S PF02609.16 gi|313127492|ref|YP_004037762.1| - 6.4 6.9 7.9 20 5.3 0.2 3.4 3 0 0 3 3 2 0 Exonuclease VII small subunit Mating_N PF12731.7 gi|313127492|ref|YP_004037762.1| - 8 6.6 17.2 0.74 9.9 0.4 4.4 3 2 1 4 4 4 0 Mating-type protein beta 1 Peptidase_M20 PF01546.28 gi|313127493|ref|YP_004037763.1| - 2.8e-31 108.8 4.1 3.6e-31 108.5 4.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|313127493|ref|YP_004037763.1| - 2.9e-13 49.7 0.1 1e-12 47.9 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M32 PF02074.15 gi|313127494|ref|YP_004037764.1| - 2e-181 604.1 0.2 2.3e-181 603.9 0.2 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DsrC PF04358.13 gi|313127494|ref|YP_004037764.1| - 0.06 13.9 0.0 0.29 11.7 0.0 2.1 2 0 0 2 2 2 0 DsrC like protein zf-ribbon_3 PF13248.6 gi|313127495|ref|YP_004037765.1| - 0.0033 16.8 3.9 0.021 14.2 3.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|313127495|ref|YP_004037765.1| - 0.0072 16.0 1.2 0.0072 16.0 1.2 1.5 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|313127495|ref|YP_004037765.1| - 0.008 16.2 0.5 0.009 16.0 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|313127495|ref|YP_004037765.1| - 0.13 12.2 2.7 0.32 11.0 2.7 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|313127495|ref|YP_004037765.1| - 0.18 11.5 0.5 0.18 11.5 0.5 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain YhfH PF14149.6 gi|313127495|ref|YP_004037765.1| - 0.33 11.0 2.5 0.59 10.1 0.2 2.0 2 0 0 2 2 2 0 YhfH-like protein UvrD-helicase PF00580.21 gi|313127496|ref|YP_004037766.1| - 1.4e-25 90.5 1.2 5.7e-12 45.8 0.0 2.7 3 0 0 3 3 3 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|313127496|ref|YP_004037766.1| - 2e-23 83.4 0.0 4.8e-23 82.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|313127496|ref|YP_004037766.1| - 7e-16 58.5 0.0 9.1e-10 38.4 0.0 2.3 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|313127496|ref|YP_004037766.1| - 2.4e-09 36.9 0.2 0.0035 17.1 0.0 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|313127496|ref|YP_004037766.1| - 3.8e-07 30.0 0.0 0.00077 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|313127496|ref|YP_004037766.1| - 2.3e-05 24.3 0.0 2.1 8.1 0.1 3.8 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 gi|313127496|ref|YP_004037766.1| - 0.00091 18.9 0.0 0.0075 15.9 0.0 2.4 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|313127496|ref|YP_004037766.1| - 0.0022 18.3 0.1 0.45 10.8 0.0 2.9 3 0 0 3 3 3 1 AAA domain Herpes_ori_bp PF02399.15 gi|313127496|ref|YP_004037766.1| - 0.0036 15.5 0.0 0.0056 14.8 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.6 gi|313127496|ref|YP_004037766.1| - 0.004 17.0 0.0 0.028 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|313127496|ref|YP_004037766.1| - 0.049 13.4 0.0 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|313127496|ref|YP_004037766.1| - 0.086 12.4 0.2 0.58 9.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|313127496|ref|YP_004037766.1| - 0.13 11.4 0.0 2.7 7.1 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Peptidase_M24 PF00557.24 gi|313127497|ref|YP_004037767.1| - 2.2e-43 148.4 0.2 2.9e-43 148.0 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF3017 PF11222.8 gi|313127498|ref|YP_004037768.1| - 0.034 14.4 2.7 0.048 13.9 2.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3017) CitMHS PF03600.16 gi|313127499|ref|YP_004037769.1| - 1.3e-58 198.6 3.0 1.3e-58 198.6 3.0 2.3 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|313127499|ref|YP_004037769.1| - 9.6e-22 77.6 39.1 2.8e-14 53.1 17.2 2.8 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|313127499|ref|YP_004037769.1| - 1.2e-18 66.7 1.3 2.2e-09 37.0 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain DUF502 PF04367.13 gi|313127500|ref|YP_004037770.1| - 7.1e-28 96.6 0.0 1.3e-27 95.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Lum_binding PF00677.17 gi|313127501|ref|YP_004037771.1| - 6.2e-45 151.1 0.3 3.5e-21 75.0 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain Prot_ATP_OB_N PF17758.1 gi|313127501|ref|YP_004037771.1| - 0.027 14.1 0.0 0.072 12.8 0.0 1.8 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain PrsW-protease PF13367.6 gi|313127502|ref|YP_004037772.1| - 5.7e-45 153.2 10.5 5.7e-45 153.2 10.5 1.6 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease DUF402 PF04167.13 gi|313127504|ref|YP_004037774.1| - 4.2e-16 58.9 1.2 7.6e-16 58.1 1.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.23 gi|313127504|ref|YP_004037774.1| - 0.00079 19.7 0.0 0.0023 18.3 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain MoeA_C PF03454.15 gi|313127504|ref|YP_004037774.1| - 0.0032 17.6 0.0 0.024 14.8 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) NifU PF01106.17 gi|313127505|ref|YP_004037775.1| - 7.1e-10 38.9 0.2 1e-09 38.4 0.2 1.3 1 0 0 1 1 1 1 NifU-like domain LVIVD PF08309.11 gi|313127506|ref|YP_004037776.1| - 5.7e-12 44.8 4.4 5.5e-06 25.6 0.0 6.0 7 0 0 7 7 7 3 LVIVD repeat TAT_signal PF10518.9 gi|313127506|ref|YP_004037776.1| - 0.016 15.0 1.0 0.016 15.0 1.0 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Beta_propel PF09826.9 gi|313127506|ref|YP_004037776.1| - 0.027 13.3 0.0 2.3 7.0 0.0 3.5 4 1 1 5 5 5 0 Beta propeller domain SBP56 PF05694.11 gi|313127506|ref|YP_004037776.1| - 0.038 12.8 0.5 1.1 8.1 0.1 2.5 2 0 0 2 2 2 0 56kDa selenium binding protein (SBP56) ROK PF00480.20 gi|313127507|ref|YP_004037777.1| - 4.8e-46 157.6 0.0 5.8e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|313127507|ref|YP_004037777.1| - 3.1e-06 26.9 0.2 1.5e-05 24.7 0.2 1.9 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 gi|313127507|ref|YP_004037777.1| - 6.8e-06 25.8 0.1 8.7e-06 25.4 0.1 1.5 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|313127507|ref|YP_004037777.1| - 0.047 14.1 0.0 0.064 13.7 0.0 1.3 1 1 0 1 1 1 0 Cell division protein FtsA AAA_lid_4 PF17864.1 gi|313127507|ref|YP_004037777.1| - 0.2 11.4 0.2 0.34 10.7 0.2 1.4 1 0 0 1 1 1 0 RuvB AAA lid domain Usp PF00582.26 gi|313127508|ref|YP_004037778.1| - 8.5e-19 68.5 0.8 1.1e-18 68.1 0.8 1.2 1 0 0 1 1 1 1 Universal stress protein family adh_short_C2 PF13561.6 gi|313127509|ref|YP_004037779.1| - 5.4e-52 176.7 0.9 1.9e-51 174.9 0.9 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313127509|ref|YP_004037779.1| - 1.9e-44 151.4 0.1 2.4e-44 151.2 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313127509|ref|YP_004037779.1| - 5.5e-06 26.4 0.2 8.3e-06 25.8 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313127509|ref|YP_004037779.1| - 0.00038 20.0 1.1 0.00096 18.7 0.1 2.0 2 1 1 3 3 3 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|313127509|ref|YP_004037779.1| - 0.007 16.3 1.7 0.011 15.7 1.7 1.5 1 1 0 1 1 1 1 NAD(P)H-binding DUF5611 PF18446.1 gi|313127510|ref|YP_004037780.1| - 1e-29 103.4 0.2 1.2e-29 103.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) zf-ribbon_3 PF13248.6 gi|313127511|ref|YP_004037781.1| - 0.017 14.5 1.5 0.46 10.0 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|313127511|ref|YP_004037781.1| - 0.044 13.9 3.6 0.087 13.0 1.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.11 gi|313127511|ref|YP_004037781.1| - 0.056 13.4 0.5 0.056 13.4 0.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Anti-TRAP PF15777.5 gi|313127511|ref|YP_004037781.1| - 0.064 13.2 0.5 0.2 11.6 0.5 1.8 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|313127511|ref|YP_004037781.1| - 0.066 13.2 1.9 0.2 11.7 0.6 2.1 2 0 0 2 2 2 0 Double zinc ribbon DUF1660 PF07874.11 gi|313127511|ref|YP_004037781.1| - 0.086 13.3 0.3 0.086 13.3 0.3 2.4 2 1 0 2 2 2 0 Prophage protein (DUF1660) zinc_ribbon_4 PF13717.6 gi|313127511|ref|YP_004037781.1| - 0.089 12.7 2.3 5.7 6.9 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain ADD_DNMT3 PF17980.1 gi|313127511|ref|YP_004037781.1| - 0.2 11.6 0.8 0.49 10.4 0.1 1.8 2 0 0 2 2 2 0 Cysteine rich ADD domain in DNMT3 zf-3CxxC_2 PF17180.4 gi|313127511|ref|YP_004037781.1| - 0.38 11.5 1.6 8.5 7.2 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain zinc_ribbon_10 PF10058.9 gi|313127511|ref|YP_004037781.1| - 0.59 9.9 2.4 2.2 8.1 0.0 2.9 4 0 0 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_9 PF14369.6 gi|313127511|ref|YP_004037781.1| - 1.1 9.6 6.4 3.3 8.0 0.1 3.1 2 1 1 3 3 3 0 zinc-ribbon Zn_Tnp_IS91 PF14319.6 gi|313127511|ref|YP_004037781.1| - 2.1 8.5 3.7 1.3 9.1 0.5 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain GntR PF00392.21 gi|313127512|ref|YP_004037782.1| - 0.0002 21.0 0.0 0.00026 20.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|313127512|ref|YP_004037782.1| - 0.00027 20.8 0.0 0.00035 20.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|313127512|ref|YP_004037782.1| - 0.0041 17.1 0.1 0.0059 16.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GGDEF_2 PF17853.1 gi|313127512|ref|YP_004037782.1| - 0.0049 17.1 0.1 0.0058 16.9 0.1 1.2 1 0 0 1 1 1 1 GGDEF-like domain RPA_C PF08784.11 gi|313127512|ref|YP_004037782.1| - 0.012 16.3 0.0 0.015 15.9 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal MarR_2 PF12802.7 gi|313127512|ref|YP_004037782.1| - 0.019 14.9 0.1 0.03 14.2 0.1 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|313127512|ref|YP_004037782.1| - 0.17 12.3 0.0 0.22 11.9 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator GCV_T PF01571.21 gi|313127513|ref|YP_004037783.1| - 2e-39 135.5 0.1 3e-39 135.0 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|313127513|ref|YP_004037783.1| - 4e-15 55.5 0.0 1.5e-14 53.6 0.0 2.1 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAD_binding_3 PF01494.19 gi|313127514|ref|YP_004037784.1| - 2.7e-16 59.8 1.4 5e-11 42.4 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_2 PF07992.14 gi|313127514|ref|YP_004037784.1| - 1.3e-06 27.9 3.9 5.3e-05 22.6 2.3 2.8 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|313127514|ref|YP_004037784.1| - 3e-06 26.6 3.5 0.0082 15.2 2.4 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|313127514|ref|YP_004037784.1| - 4.9e-06 26.4 0.6 0.034 13.7 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|313127514|ref|YP_004037784.1| - 5.9e-05 22.3 0.9 0.0032 16.6 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|313127514|ref|YP_004037784.1| - 7.1e-05 22.3 0.2 0.0001 21.8 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313127514|ref|YP_004037784.1| - 0.0012 17.6 0.2 0.022 13.4 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|313127514|ref|YP_004037784.1| - 0.0024 18.0 0.7 0.013 15.7 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|313127514|ref|YP_004037784.1| - 0.021 14.1 0.5 0.13 11.5 0.5 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|313127514|ref|YP_004037784.1| - 0.036 13.1 0.0 0.27 10.3 0.0 1.9 2 0 0 2 2 2 0 Squalene epoxidase Trp_halogenase PF04820.14 gi|313127514|ref|YP_004037784.1| - 0.088 11.6 0.5 0.33 9.7 0.1 1.9 3 0 0 3 3 3 0 Tryptophan halogenase NAD_binding_2 PF03446.15 gi|313127514|ref|YP_004037784.1| - 0.16 12.2 0.0 0.45 10.7 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Sortilin-Vps10 PF15902.5 gi|313127516|ref|YP_004037786.1| - 2.7e-14 52.8 0.0 8.8e-07 28.1 0.0 2.9 1 1 2 3 3 3 2 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 gi|313127516|ref|YP_004037786.1| - 1.8e-08 34.0 4.5 0.00089 18.6 0.0 3.6 2 1 1 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 gi|313127516|ref|YP_004037786.1| - 2.6e-06 26.6 25.9 0.15 12.2 0.2 6.1 6 0 0 6 6 6 4 BNR/Asp-box repeat BNR_2 PF13088.6 gi|313127516|ref|YP_004037786.1| - 0.00038 19.8 4.5 0.083 12.2 0.1 2.8 1 1 1 2 2 2 2 BNR repeat-like domain DUF4185 PF13810.6 gi|313127516|ref|YP_004037786.1| - 0.12 11.6 9.4 1.5 8.0 0.1 3.7 1 1 1 3 3 3 0 Domain of unknown function (DUF4185) HRG PF16954.5 gi|313127517|ref|YP_004037787.1| - 0.24 11.8 5.5 1.3 9.5 0.3 2.2 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene UvrA_inter PF17760.1 gi|313127518|ref|YP_004037788.1| - 8.3e-34 115.9 0.2 4e-33 113.7 0.0 2.4 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|313127518|ref|YP_004037788.1| - 1.1e-29 102.9 0.8 6.9e-27 94.0 0.1 3.9 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|313127518|ref|YP_004037788.1| - 3.2e-22 79.5 0.0 5.8e-12 46.3 0.0 4.3 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|313127518|ref|YP_004037788.1| - 2.5e-13 50.0 0.2 0.0033 16.9 0.2 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313127518|ref|YP_004037788.1| - 2.3e-08 33.7 0.0 0.0019 17.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|313127518|ref|YP_004037788.1| - 7.4e-07 29.7 0.4 0.048 14.0 0.0 3.5 4 0 0 4 4 4 2 AAA ATPase domain DnaJ_CXXCXGXG PF00684.19 gi|313127518|ref|YP_004037788.1| - 1.9e-06 28.2 3.1 0.018 15.4 0.7 3.3 3 0 0 3 3 3 1 DnaJ central domain RsgA_GTPase PF03193.16 gi|313127518|ref|YP_004037788.1| - 2.7e-06 27.4 0.0 0.017 15.0 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|313127518|ref|YP_004037788.1| - 6e-06 26.6 0.0 0.11 12.8 0.0 3.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|313127518|ref|YP_004037788.1| - 2.6e-05 24.8 0.2 0.02 15.4 0.0 3.4 3 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|313127518|ref|YP_004037788.1| - 8.1e-05 22.5 0.0 0.11 12.2 0.0 3.6 4 0 0 4 4 4 1 AAA ATPase domain ATPase PF06745.13 gi|313127518|ref|YP_004037788.1| - 0.00014 21.3 0.2 0.064 12.6 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA_18 PF13238.6 gi|313127518|ref|YP_004037788.1| - 0.00072 20.1 0.2 0.86 10.1 0.0 3.2 3 0 0 3 3 2 1 AAA domain APS_kinase PF01583.20 gi|313127518|ref|YP_004037788.1| - 0.00082 19.3 1.2 4.2 7.2 0.0 3.7 4 0 0 4 4 3 1 Adenylylsulphate kinase AAA_21 PF13304.6 gi|313127518|ref|YP_004037788.1| - 0.00085 19.2 11.9 0.05 13.4 0.0 4.6 5 0 0 5 5 5 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_14 PF13173.6 gi|313127518|ref|YP_004037788.1| - 0.0012 18.9 0.0 0.74 9.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|313127518|ref|YP_004037788.1| - 0.0013 18.3 0.1 1.8 8.1 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|313127518|ref|YP_004037788.1| - 0.0015 18.7 0.1 2 8.6 0.0 3.5 4 0 0 4 4 2 1 AAA domain cobW PF02492.19 gi|313127518|ref|YP_004037788.1| - 0.0026 17.4 0.1 0.53 9.9 0.0 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|313127518|ref|YP_004037788.1| - 0.0065 16.4 0.0 0.33 10.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Viral_helicase1 PF01443.18 gi|313127518|ref|YP_004037788.1| - 0.01 15.6 0.1 0.45 10.2 0.0 2.6 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|313127518|ref|YP_004037788.1| - 0.011 15.0 0.0 3.6 6.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|313127518|ref|YP_004037788.1| - 0.02 14.8 0.0 6.3 6.6 0.0 2.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea FtsK_SpoIIIE PF01580.18 gi|313127518|ref|YP_004037788.1| - 0.034 13.5 0.5 20 4.4 0.0 3.4 4 0 0 4 4 3 0 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|313127518|ref|YP_004037788.1| - 0.034 13.9 1.3 2.1 8.0 0.1 3.2 4 0 0 4 4 3 0 AAA domain NB-ARC PF00931.22 gi|313127518|ref|YP_004037788.1| - 0.035 13.3 0.0 0.52 9.4 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|313127518|ref|YP_004037788.1| - 0.036 14.5 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.23 gi|313127518|ref|YP_004037788.1| - 0.048 13.7 0.2 3.1 7.9 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|313127518|ref|YP_004037788.1| - 0.11 12.2 1.4 5.3 6.7 0.0 3.3 4 0 0 4 4 4 0 AAA domain PRK PF00485.18 gi|313127518|ref|YP_004037788.1| - 0.12 12.1 0.2 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zn-ribbon_8 PF09723.10 gi|313127518|ref|YP_004037788.1| - 0.13 12.4 5.6 22 5.3 0.4 3.5 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|313127518|ref|YP_004037788.1| - 0.83 10.0 2.9 2.7 8.3 0.1 2.8 3 0 0 3 3 2 0 zinc-ribbon DUF87 PF01935.17 gi|313127518|ref|YP_004037788.1| - 3.4 7.7 5.8 0.76 9.8 0.0 2.8 3 1 0 3 3 2 0 Helicase HerA, central domain SepF PF04472.12 gi|313127519|ref|YP_004037789.1| - 9.6e-15 54.6 1.9 1.4e-14 54.1 1.9 1.2 1 0 0 1 1 1 1 Cell division protein SepF Lar_N PF09861.9 gi|313127519|ref|YP_004037789.1| - 0.034 13.3 0.2 0.043 13.0 0.2 1.2 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Rx_N PF18052.1 gi|313127519|ref|YP_004037789.1| - 0.091 13.1 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Rx N-terminal domain DUF1028 PF06267.12 gi|313127520|ref|YP_004037790.1| - 3.9e-68 229.1 0.3 4.5e-68 228.8 0.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PUA PF01472.20 gi|313127521|ref|YP_004037791.1| - 3.1e-16 59.1 1.3 3.1e-16 59.1 1.3 1.8 2 1 0 2 2 2 1 PUA domain PIN_5 PF08745.11 gi|313127521|ref|YP_004037791.1| - 0.041 13.3 0.1 0.069 12.6 0.1 1.4 1 0 0 1 1 1 0 PINc domain ribonuclease DUF1947 PF09183.10 gi|313127521|ref|YP_004037791.1| - 0.043 14.1 0.0 0.079 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) GATA PF00320.27 gi|313127522|ref|YP_004037792.1| - 0.011 15.3 1.8 0.73 9.5 0.2 2.4 2 0 0 2 2 2 0 GATA zinc finger RNB PF00773.19 gi|313127523|ref|YP_004037793.1| - 7.3e-82 275.3 0.1 1.3e-80 271.2 0.1 2.0 1 1 0 1 1 1 1 RNB domain DUF982 PF06169.12 gi|313127523|ref|YP_004037793.1| - 0.0035 17.3 0.0 0.0099 15.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF982) Prok-RING_1 PF14446.6 gi|313127524|ref|YP_004037794.1| - 0.084 12.8 0.6 0.16 11.9 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 CBS PF00571.28 gi|313127525|ref|YP_004037795.1| - 1.5e-27 95.8 4.7 5.4e-15 55.6 0.4 2.0 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|313127525|ref|YP_004037795.1| - 0.099 12.6 0.0 14 5.6 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain IF3_N PF05198.16 gi|313127525|ref|YP_004037795.1| - 0.12 12.6 0.0 15 6.0 0.0 2.7 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain PPC PF04151.15 gi|313127526|ref|YP_004037796.1| - 6e-08 33.7 3.0 7.9e-05 23.7 0.2 4.9 3 1 0 3 3 3 2 Bacterial pre-peptidase C-terminal domain Ribosomal_S10 PF00338.22 gi|313127528|ref|YP_004037798.1| - 6e-26 90.5 0.0 6.6e-26 90.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|313127529|ref|YP_004037799.1| - 9.7e-57 191.6 0.1 1.3e-56 191.2 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|313127529|ref|YP_004037799.1| - 7.7e-37 126.0 0.1 1.9e-36 124.8 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|313127529|ref|YP_004037799.1| - 2.8e-17 62.9 3.1 2.8e-16 59.7 1.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|313127529|ref|YP_004037799.1| - 1.9e-06 27.9 0.1 2.4e-05 24.4 0.1 2.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313127529|ref|YP_004037799.1| - 0.00035 20.5 0.1 0.017 15.1 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|313127529|ref|YP_004037799.1| - 0.00041 19.8 0.1 0.061 12.7 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.6 gi|313127529|ref|YP_004037799.1| - 0.008 16.1 0.5 0.022 14.7 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|313127529|ref|YP_004037799.1| - 0.014 14.8 0.0 0.41 10.0 0.0 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|313127529|ref|YP_004037799.1| - 0.026 13.8 0.0 0.065 12.5 0.0 1.6 1 1 0 1 1 1 0 Septin PduV-EutP PF10662.9 gi|313127529|ref|YP_004037799.1| - 0.08 12.7 0.2 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|313127529|ref|YP_004037799.1| - 0.13 11.8 0.1 0.62 9.6 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|313127529|ref|YP_004037799.1| - 0.13 12.3 0.0 12 5.9 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Homoserine_dh PF00742.19 gi|313127530|ref|YP_004037800.1| - 6.4e-48 162.9 0.1 1e-47 162.3 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|313127530|ref|YP_004037800.1| - 5e-08 33.6 0.2 9.2e-08 32.8 0.2 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|313127530|ref|YP_004037800.1| - 6.1e-08 32.7 0.0 1.2e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 gi|313127530|ref|YP_004037800.1| - 0.0095 15.3 0.1 0.015 14.6 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313127530|ref|YP_004037800.1| - 0.023 14.3 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|313127530|ref|YP_004037800.1| - 0.026 14.4 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|313127530|ref|YP_004037800.1| - 0.18 12.2 0.5 9.9 6.7 0.2 2.3 1 1 1 2 2 2 0 Putative NAD(P)-binding ACT PF01842.25 gi|313127531|ref|YP_004037801.1| - 3.5e-06 26.7 0.5 5.7e-05 22.8 0.0 2.6 2 1 1 3 3 3 1 ACT domain GTP_EFTU PF00009.27 gi|313127532|ref|YP_004037802.1| - 4.1e-65 219.0 0.8 6.7e-65 218.3 0.8 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|313127532|ref|YP_004037802.1| - 1.4e-24 86.0 0.1 3e-23 81.6 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|313127532|ref|YP_004037802.1| - 1.3e-22 79.7 0.5 1.3e-22 79.7 0.5 1.8 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_IV PF03764.18 gi|313127532|ref|YP_004037802.1| - 2e-21 76.0 0.0 8.1e-21 74.0 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV GTP_EFTU_D2 PF03144.25 gi|313127532|ref|YP_004037802.1| - 1.2e-15 57.7 1.6 5.7e-15 55.5 1.6 2.3 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|313127532|ref|YP_004037802.1| - 8.3e-06 25.9 0.4 9.3e-05 22.5 0.1 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF948 PF06103.11 gi|313127532|ref|YP_004037802.1| - 0.014 15.6 0.0 0.063 13.5 0.0 2.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) RF3_C PF16658.5 gi|313127532|ref|YP_004037802.1| - 0.043 13.7 0.1 0.09 12.6 0.1 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|313127532|ref|YP_004037802.1| - 0.065 12.7 0.1 0.19 11.1 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|313127532|ref|YP_004037802.1| - 0.18 11.4 0.0 0.44 10.1 0.0 1.6 1 0 0 1 1 1 0 Ras family DUF4157 PF13699.6 gi|313127533|ref|YP_004037803.1| - 0.0032 17.7 1.0 0.0097 16.1 1.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4157) Ribosomal_S7 PF00177.21 gi|313127534|ref|YP_004037804.1| - 1.8e-37 128.3 3.9 2.2e-37 128.0 3.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2185 PF09951.9 gi|313127534|ref|YP_004037804.1| - 0.036 13.9 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2185) Peptidase_M13 PF01431.21 gi|313127534|ref|YP_004037804.1| - 0.043 13.4 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M13 PBECR3 PF18812.1 gi|313127534|ref|YP_004037804.1| - 0.058 13.4 0.3 0.092 12.7 0.3 1.3 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 DUF2420 PF10336.9 gi|313127534|ref|YP_004037804.1| - 0.08 13.0 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) PAS_9 PF13426.7 gi|313127534|ref|YP_004037804.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 PAS domain Ribosom_S12_S23 PF00164.25 gi|313127535|ref|YP_004037805.1| - 1.2e-50 169.9 0.6 1.5e-50 169.6 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MS_channel PF00924.18 gi|313127536|ref|YP_004037806.1| - 2.3e-32 112.3 0.0 2.3e-32 112.3 0.0 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel Usp PF00582.26 gi|313127537|ref|YP_004037807.1| - 1.5e-12 48.2 0.1 2.4e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 Universal stress protein family KH_2 PF07650.17 gi|313127538|ref|YP_004037808.1| - 7.1e-16 57.8 0.5 2.4e-07 30.4 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|313127538|ref|YP_004037808.1| - 1e-11 44.7 0.3 2.2e-10 40.5 0.1 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|313127538|ref|YP_004037808.1| - 3.2e-09 36.5 0.1 6.2e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|313127538|ref|YP_004037808.1| - 0.00049 19.9 0.2 0.045 13.6 0.0 2.2 1 1 1 2 2 2 2 KH domain RNA_pol_Rpb1_5 PF04998.17 gi|313127539|ref|YP_004037809.1| - 1.2e-54 185.5 0.3 1.5e-54 185.2 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|313127539|ref|YP_004037809.1| - 0.064 13.2 0.1 0.81 9.7 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain RNA_pol_Rpb1_1 PF04997.12 gi|313127540|ref|YP_004037810.1| - 5.5e-108 361.0 0.0 8.8e-108 360.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|313127540|ref|YP_004037810.1| - 3e-69 232.5 0.3 4.9e-69 231.8 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|313127540|ref|YP_004037810.1| - 7.3e-32 109.5 0.0 1.5e-31 108.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|313127540|ref|YP_004037810.1| - 9.3e-30 103.6 0.0 1.6e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|313127540|ref|YP_004037810.1| - 3.7e-27 95.4 0.1 6.7e-27 94.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.22 gi|313127540|ref|YP_004037810.1| - 0.00038 20.4 0.0 0.001 19.1 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HypA PF01155.19 gi|313127540|ref|YP_004037810.1| - 0.37 10.8 1.6 1.1 9.3 0.1 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|313127540|ref|YP_004037810.1| - 0.55 10.5 2.5 2.2 8.6 0.2 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain RNA_pol_Rpb2_6 PF00562.28 gi|313127541|ref|YP_004037811.1| - 5.1e-128 427.5 0.0 7.2e-128 427.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|313127541|ref|YP_004037811.1| - 3e-25 88.4 0.0 5.3e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|313127541|ref|YP_004037811.1| - 2.2e-23 82.3 0.7 1.4e-22 79.7 0.5 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|313127541|ref|YP_004037811.1| - 4.3e-09 36.8 5.6 1.3e-08 35.2 5.6 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 CAF1-p150_N PF15557.6 gi|313127541|ref|YP_004037811.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 CAF1 complex subunit p150, region binding to PCNA RNA_pol_Rpb2_1 PF04563.15 gi|313127542|ref|YP_004037812.1| - 3.4e-51 173.7 0.2 4.1e-51 173.4 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|313127542|ref|YP_004037812.1| - 3.2e-26 92.2 0.1 4.8e-26 91.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|313127542|ref|YP_004037812.1| - 1e-24 86.5 0.0 2e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 DUF1359 PF07097.11 gi|313127542|ref|YP_004037812.1| - 0.28 11.4 1.3 27 5.0 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1359) RNA_pol_Rpb5_C PF01191.19 gi|313127543|ref|YP_004037813.1| - 6.2e-27 93.3 0.6 6.9e-27 93.1 0.6 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|313127543|ref|YP_004037813.1| - 0.088 13.1 2.2 4.4 7.6 2.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) CRCB PF02537.15 gi|313127544|ref|YP_004037814.1| - 2.6e-19 69.3 10.8 3.4e-19 68.9 10.8 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|313127545|ref|YP_004037815.1| - 1.1e-17 64.1 13.8 1.4e-17 63.8 13.8 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) SpecificRecomb PF10136.9 gi|313127545|ref|YP_004037815.1| - 0.11 10.8 8.6 0.053 11.8 1.8 2.0 1 1 1 2 2 2 0 Site-specific recombinase DUF853 PF05872.12 gi|313127546|ref|YP_004037816.1| - 2.4e-09 36.3 0.1 5.1e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|313127546|ref|YP_004037816.1| - 2.6e-05 24.5 0.0 4.3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|313127546|ref|YP_004037816.1| - 0.0059 15.6 0.0 3 6.7 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|313127546|ref|YP_004037816.1| - 0.073 13.5 1.0 0.33 11.3 0.5 2.4 1 1 1 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|313127546|ref|YP_004037816.1| - 0.084 13.3 0.0 11 6.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|313127546|ref|YP_004037816.1| - 0.8 9.4 4.1 1.8 8.3 0.1 2.6 3 0 0 3 3 3 0 AAA domain CarboxypepD_reg PF13620.6 gi|313127547|ref|YP_004037817.1| - 0.00018 21.7 2.4 0.00037 20.7 2.3 1.6 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|313127547|ref|YP_004037817.1| - 0.0019 18.2 1.4 0.0041 17.1 1.4 1.5 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|313127547|ref|YP_004037817.1| - 0.0021 18.2 0.4 0.0058 16.8 0.4 1.8 1 1 0 1 1 1 1 Macroglobulin domain MG4 YtkA PF13115.6 gi|313127547|ref|YP_004037817.1| - 0.0048 17.5 1.5 0.034 14.8 1.5 2.0 1 1 0 1 1 1 1 YtkA-like DUF1743 PF08489.11 gi|313127548|ref|YP_004037818.1| - 1.7e-36 124.8 0.0 2.8e-36 124.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|313127548|ref|YP_004037818.1| - 0.073 13.0 0.2 0.14 12.0 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|313127548|ref|YP_004037818.1| - 0.12 12.4 1.0 0.28 11.2 1.0 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|313127548|ref|YP_004037818.1| - 0.21 11.6 1.1 0.49 10.4 1.1 1.6 1 0 0 1 1 1 0 zinc-ribbons HTH_3 PF01381.22 gi|313127549|ref|YP_004037819.1| - 8.3e-09 35.4 0.0 1.4e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|313127549|ref|YP_004037819.1| - 2.7e-06 27.6 0.1 8.6e-06 26.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|313127549|ref|YP_004037819.1| - 0.0001 22.3 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|313127549|ref|YP_004037819.1| - 0.00013 21.7 0.1 0.00027 20.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|313127549|ref|YP_004037819.1| - 0.00028 20.6 0.5 0.0006 19.5 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|313127549|ref|YP_004037819.1| - 0.00048 20.0 0.0 0.0012 18.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_8 PF02954.19 gi|313127549|ref|YP_004037819.1| - 0.026 14.3 0.1 0.13 12.1 0.2 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family YdaS_antitoxin PF15943.5 gi|313127549|ref|YP_004037819.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4 PF04545.16 gi|313127549|ref|YP_004037819.1| - 0.088 12.3 0.1 0.31 10.6 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|313127549|ref|YP_004037819.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.23 gi|313127549|ref|YP_004037819.1| - 0.16 12.1 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family GST_N_3 PF13417.6 gi|313127550|ref|YP_004037820.1| - 7.4e-13 48.7 0.0 8.2e-13 48.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|313127550|ref|YP_004037820.1| - 1.6e-12 47.4 0.0 2.7e-12 46.7 0.0 1.4 1 1 1 2 2 2 1 Glutaredoxin GST_N_2 PF13409.6 gi|313127550|ref|YP_004037820.1| - 6.8e-10 39.1 0.0 7.8e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|313127550|ref|YP_004037820.1| - 0.0046 17.3 0.1 0.0054 17.1 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|313127550|ref|YP_004037820.1| - 0.013 15.6 0.3 0.022 14.8 0.3 1.4 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|313127550|ref|YP_004037820.1| - 0.091 13.2 0.0 0.12 12.9 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|313127550|ref|YP_004037820.1| - 0.1 12.7 0.1 0.88 9.7 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin NTP_transf_3 PF12804.7 gi|313127550|ref|YP_004037820.1| - 0.18 12.2 0.0 0.2 12.0 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain Arylsulfotrans PF05935.11 gi|313127551|ref|YP_004037821.1| - 2.4e-11 43.2 7.2 8.7e-10 38.0 5.4 2.4 2 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|313127551|ref|YP_004037821.1| - 8.8e-06 25.3 4.8 0.00012 21.6 3.6 2.5 1 1 1 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|313127551|ref|YP_004037821.1| - 0.0025 17.8 3.7 1.5 9.0 0.0 4.5 5 0 0 5 5 5 1 NHL repeat PQQ PF01011.21 gi|313127551|ref|YP_004037821.1| - 0.0062 16.4 2.3 5 7.2 0.1 3.7 3 0 0 3 3 3 2 PQQ enzyme repeat Xan_ur_permease PF00860.20 gi|313127552|ref|YP_004037822.1| - 7.7e-36 123.6 45.5 1.9e-35 122.3 45.5 1.6 1 1 0 1 1 1 1 Permease family Pribosyltran PF00156.27 gi|313127553|ref|YP_004037823.1| - 5.7e-09 35.7 0.2 9.5e-09 35.0 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MOFRL PF05161.13 gi|313127553|ref|YP_004037823.1| - 0.00054 20.1 0.5 0.0073 16.5 0.1 2.3 2 0 0 2 2 2 1 MOFRL family HTH_3 PF01381.22 gi|313127553|ref|YP_004037823.1| - 0.0056 16.7 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix PRTase_2 PF15609.6 gi|313127553|ref|YP_004037823.1| - 0.036 13.6 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_31 PF13560.6 gi|313127553|ref|YP_004037823.1| - 0.055 13.8 0.3 0.11 12.9 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Pribosyltran PF00156.27 gi|313127554|ref|YP_004037824.1| - 4.5e-13 49.0 2.4 6.2e-13 48.6 2.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|313127554|ref|YP_004037824.1| - 0.00021 20.8 0.1 0.00026 20.5 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|313127554|ref|YP_004037824.1| - 0.011 15.3 1.1 0.014 15.0 0.2 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase PikAIV_N PF18605.1 gi|313127554|ref|YP_004037824.1| - 0.082 12.5 2.9 0.92 9.1 0.1 2.6 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain Ribosomal_L4 PF00573.22 gi|313127554|ref|YP_004037824.1| - 0.12 12.0 0.1 0.16 11.6 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family CarS-like PF01864.17 gi|313127555|ref|YP_004037825.1| - 1.6e-43 148.7 2.7 1.9e-43 148.5 2.7 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|313127555|ref|YP_004037825.1| - 0.00071 19.4 4.5 0.00071 19.4 4.5 1.8 1 1 1 2 2 2 1 Cytidylyltransferase family CcmD PF04995.14 gi|313127555|ref|YP_004037825.1| - 0.0069 16.4 0.0 0.0069 16.4 0.0 2.6 2 1 1 3 3 3 1 Heme exporter protein D (CcmD) Pro_dh PF01619.18 gi|313127556|ref|YP_004037826.1| - 3.3e-28 99.1 0.1 5.8e-28 98.3 0.1 1.4 1 1 0 1 1 1 1 Proline dehydrogenase DUF502 PF04367.13 gi|313127557|ref|YP_004037827.1| - 1.5e-18 66.7 1.1 2e-18 66.2 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Colicin_V PF02674.16 gi|313127557|ref|YP_004037827.1| - 0.0066 16.4 4.2 0.0099 15.9 4.2 1.2 1 0 0 1 1 1 1 Colicin V production protein DUF485 PF04341.12 gi|313127557|ref|YP_004037827.1| - 0.045 13.7 3.8 0.07 13.1 3.8 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 MgtE PF01769.16 gi|313127557|ref|YP_004037827.1| - 0.11 12.8 3.6 0.16 12.4 3.6 1.2 1 0 0 1 1 1 0 Divalent cation transporter Ribonuc_L-PSP PF01042.21 gi|313127558|ref|YP_004037828.1| - 3.6e-09 36.7 0.4 6.9e-09 35.8 0.4 1.4 1 1 0 1 1 1 1 Endoribonuclease L-PSP Aminotran_4 PF01063.19 gi|313127559|ref|YP_004037829.1| - 8.9e-50 169.6 0.0 1.1e-49 169.4 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Epimerase PF01370.21 gi|313127560|ref|YP_004037830.1| - 3.7e-19 69.1 0.0 5.8e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313127560|ref|YP_004037830.1| - 9.9e-15 54.8 1.2 2.1e-11 43.8 0.2 2.7 1 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|313127560|ref|YP_004037830.1| - 2.2e-06 27.0 0.0 3.6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|313127560|ref|YP_004037830.1| - 4.7e-06 26.6 0.9 4.1e-05 23.5 0.3 2.1 2 0 0 2 2 2 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|313127560|ref|YP_004037830.1| - 1e-05 24.7 0.0 1.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 gi|313127560|ref|YP_004037830.1| - 0.00017 21.5 2.1 0.021 14.7 0.2 2.2 1 1 1 2 2 2 2 KR domain Polysacc_synt_2 PF02719.15 gi|313127560|ref|YP_004037830.1| - 0.00034 19.8 2.0 0.66 9.0 3.1 3.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|313127560|ref|YP_004037830.1| - 0.0099 15.5 0.2 0.016 14.7 0.2 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 gi|313127560|ref|YP_004037830.1| - 0.015 14.5 0.0 0.49 9.5 0.0 2.1 1 1 1 2 2 2 0 Male sterility protein LpxI_N PF17930.1 gi|313127560|ref|YP_004037830.1| - 0.024 14.5 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 LpxI N-terminal domain 2-Hacid_dh_C PF02826.19 gi|313127560|ref|YP_004037830.1| - 0.039 13.3 0.1 0.064 12.6 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|313127560|ref|YP_004037830.1| - 0.05 14.1 0.4 0.19 12.2 0.3 2.1 2 1 0 2 2 2 0 CoA binding domain adh_short PF00106.25 gi|313127560|ref|YP_004037830.1| - 0.065 12.7 0.4 0.13 11.7 0.4 1.5 1 0 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|313127560|ref|YP_004037830.1| - 0.12 12.5 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DHBP_synthase PF00926.19 gi|313127561|ref|YP_004037831.1| - 3.7e-53 179.9 0.0 4.2e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|313127562|ref|YP_004037832.1| - 9.4e-47 158.1 0.0 1.3e-46 157.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|313127562|ref|YP_004037832.1| - 3.5e-06 26.8 0.1 6.9e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313127562|ref|YP_004037832.1| - 5.8e-06 26.3 0.0 1e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313127562|ref|YP_004037832.1| - 0.00013 22.1 0.0 0.00024 21.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|313127562|ref|YP_004037832.1| - 0.00015 21.3 0.0 0.00024 20.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|313127562|ref|YP_004037832.1| - 0.0083 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|313127562|ref|YP_004037832.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|313127562|ref|YP_004037832.1| - 0.015 15.7 0.0 0.029 14.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|313127562|ref|YP_004037832.1| - 0.017 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|313127562|ref|YP_004037832.1| - 0.053 13.3 1.5 0.055 13.3 0.2 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 gi|313127562|ref|YP_004037832.1| - 0.059 13.6 0.0 0.16 12.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313127562|ref|YP_004037832.1| - 0.061 13.1 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|313127562|ref|YP_004037832.1| - 0.16 11.7 0.1 0.57 10.0 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain tRNA-synt_1d PF00750.19 gi|313127564|ref|YP_004037834.1| - 8.5e-41 140.1 0.1 1.1e-40 139.6 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|313127564|ref|YP_004037834.1| - 4.3e-37 126.9 0.2 1.2e-36 125.5 0.2 1.8 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|313127564|ref|YP_004037834.1| - 5.7e-11 42.8 0.0 1.8e-10 41.3 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|313127564|ref|YP_004037834.1| - 0.0037 16.2 0.0 0.073 12.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) CbiA PF01656.23 gi|313127565|ref|YP_004037835.1| - 2.4e-18 66.4 0.2 3.8e-18 65.8 0.2 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|313127565|ref|YP_004037835.1| - 8.9e-17 61.3 5.5 5.1e-11 42.5 1.9 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|313127565|ref|YP_004037835.1| - 1.8e-16 60.6 0.0 2.9e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|313127565|ref|YP_004037835.1| - 6.1e-10 39.0 0.0 0.00041 19.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|313127565|ref|YP_004037835.1| - 1.5e-05 24.4 1.3 6.5e-05 22.4 1.2 1.9 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|313127565|ref|YP_004037835.1| - 2.2e-05 24.1 1.5 0.00038 20.0 1.5 2.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|313127565|ref|YP_004037835.1| - 8.6e-05 22.4 2.8 0.018 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|313127565|ref|YP_004037835.1| - 0.0021 17.3 3.0 0.0046 16.2 3.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.11 gi|313127565|ref|YP_004037835.1| - 0.0024 17.2 1.8 0.0053 16.1 0.7 1.9 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|313127565|ref|YP_004037835.1| - 0.0052 16.6 0.1 0.0089 15.8 0.1 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|313127565|ref|YP_004037835.1| - 0.0066 16.1 2.6 0.073 12.7 0.8 2.5 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|313127565|ref|YP_004037835.1| - 0.024 14.2 1.9 0.051 13.2 0.6 2.2 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|313127565|ref|YP_004037835.1| - 0.14 12.0 0.1 0.26 11.2 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase eRF1_2 PF03464.15 gi|313127566|ref|YP_004037836.1| - 2.2e-41 141.3 0.0 4.8e-41 140.2 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|313127566|ref|YP_004037836.1| - 6.8e-28 97.4 0.0 2.7e-27 95.5 0.1 2.0 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|313127566|ref|YP_004037836.1| - 4.6e-18 65.8 0.2 1.3e-17 64.3 0.1 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|313127566|ref|YP_004037836.1| - 2.1e-14 54.0 0.2 1.2e-13 51.5 0.0 2.3 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|313127566|ref|YP_004037836.1| - 2.1e-11 43.9 0.0 3.2e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.10 gi|313127566|ref|YP_004037836.1| - 0.02 15.0 1.9 0.02 15.0 1.9 1.8 2 0 0 2 2 2 0 Zinc ribbon domain ATP-synt_D PF01813.17 gi|313127570|ref|YP_004037840.1| - 3.7e-55 186.8 11.2 5.3e-55 186.3 11.2 1.2 1 0 0 1 1 1 1 ATP synthase subunit D PAPA-1 PF04795.12 gi|313127570|ref|YP_004037840.1| - 4 8.3 14.1 0.5 11.2 8.9 2.1 2 0 0 2 2 2 0 PAPA-1-like conserved region ATP-synt_ab PF00006.25 gi|313127571|ref|YP_004037841.1| - 1.2e-64 217.8 0.0 1.7e-64 217.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|313127571|ref|YP_004037841.1| - 1.1e-13 51.5 0.7 2.5e-13 50.3 0.7 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|313127571|ref|YP_004037841.1| - 0.036 14.2 0.3 0.12 12.6 0.3 2.0 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|313127572|ref|YP_004037842.1| - 1.1e-91 306.3 0.0 1.5e-91 305.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|313127572|ref|YP_004037842.1| - 1.2e-37 128.4 0.1 2.2e-37 127.6 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|313127572|ref|YP_004037842.1| - 3e-12 46.9 3.7 3e-12 46.9 3.7 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain QRPTase_N PF02749.16 gi|313127572|ref|YP_004037842.1| - 0.13 12.3 0.4 26 5.0 0.0 3.0 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain ATP-synt_F PF01990.17 gi|313127573|ref|YP_004037843.1| - 5.2e-16 58.7 0.0 6e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit AMP-binding_C PF13193.6 gi|313127573|ref|YP_004037843.1| - 0.042 14.8 0.0 2.7 9.0 0.0 2.2 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain vATP-synt_AC39 PF01992.16 gi|313127574|ref|YP_004037844.1| - 2.9e-78 263.7 9.1 3.3e-78 263.6 9.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Inhibitor_I24 PF10465.9 gi|313127574|ref|YP_004037844.1| - 0.17 11.8 0.8 2.9 7.9 0.0 2.8 3 0 0 3 3 3 0 PinA peptidase inhibitor vATP-synt_E PF01991.18 gi|313127575|ref|YP_004037845.1| - 7.2e-44 149.6 14.0 1.2e-43 148.8 14.0 1.3 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|313127575|ref|YP_004037845.1| - 0.00047 20.3 21.3 0.0005 20.2 19.0 2.0 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) HrpE PF06188.12 gi|313127575|ref|YP_004037845.1| - 0.0086 16.0 10.7 1.3 8.9 7.1 2.2 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.8 gi|313127575|ref|YP_004037845.1| - 0.018 14.4 21.1 0.42 10.0 3.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) V-ATPase_G_2 PF16999.5 gi|313127575|ref|YP_004037845.1| - 0.091 13.2 20.9 0.12 12.8 20.1 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Endonuc_Holl PF10107.9 gi|313127575|ref|YP_004037845.1| - 0.18 11.7 8.3 0.27 11.1 8.3 1.2 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase DivIVA PF05103.13 gi|313127575|ref|YP_004037845.1| - 0.51 10.4 12.5 0.14 12.3 8.4 2.0 1 1 0 1 1 1 0 DivIVA protein YtxH PF12732.7 gi|313127575|ref|YP_004037845.1| - 0.88 10.1 11.3 0.31 11.6 1.6 3.2 1 1 1 2 2 2 0 YtxH-like protein V_ATPase_I PF01496.19 gi|313127575|ref|YP_004037845.1| - 1.2 7.0 3.4 1.3 6.8 3.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF883 PF05957.13 gi|313127575|ref|YP_004037845.1| - 4.1 8.1 16.9 2.9 8.5 1.0 3.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Atg14 PF10186.9 gi|313127575|ref|YP_004037845.1| - 6.4 5.8 7.5 8.4 5.4 7.5 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ATP-synt_C PF00137.21 gi|313127576|ref|YP_004037846.1| - 3e-13 49.9 10.2 3.5e-13 49.7 10.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|313127577|ref|YP_004037847.1| - 1.2e-19 69.8 16.3 1.1e-09 36.9 1.8 5.0 5 0 0 5 5 5 3 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|313127577|ref|YP_004037847.1| - 0.00019 21.8 4.2 0.0097 16.3 0.3 2.7 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Spc24 PF08286.11 gi|313127577|ref|YP_004037847.1| - 0.003 17.8 3.1 0.018 15.3 0.1 2.3 2 0 0 2 2 2 1 Spc24 subunit of Ndc80 APG6_N PF17675.1 gi|313127577|ref|YP_004037847.1| - 0.015 15.8 8.9 0.85 10.2 0.8 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4140 PF13600.6 gi|313127577|ref|YP_004037847.1| - 0.019 15.4 5.9 0.68 10.4 2.4 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TPD52 PF04201.15 gi|313127577|ref|YP_004037847.1| - 0.027 14.1 1.0 2.4 7.8 0.1 2.3 2 0 0 2 2 2 0 Tumour protein D52 family Tektin PF03148.14 gi|313127577|ref|YP_004037847.1| - 0.03 13.1 0.3 0.13 10.9 0.0 1.8 2 0 0 2 2 2 0 Tektin family LPP PF04728.13 gi|313127577|ref|YP_004037847.1| - 0.03 14.7 2.2 3.8 8.0 0.3 2.5 2 0 0 2 2 2 0 Lipoprotein leucine-zipper CCDC-167 PF15188.6 gi|313127577|ref|YP_004037847.1| - 0.037 14.4 2.7 4.7 7.6 0.1 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Takusan PF04822.13 gi|313127577|ref|YP_004037847.1| - 0.081 12.8 1.8 0.2 11.6 1.8 1.5 1 0 0 1 1 1 0 Takusan Prefoldin_2 PF01920.20 gi|313127577|ref|YP_004037847.1| - 0.092 12.7 3.6 0.93 9.5 0.9 2.3 2 0 0 2 2 2 0 Prefoldin subunit DLP_helical PF18709.1 gi|313127577|ref|YP_004037847.1| - 0.1 11.8 4.0 2.8 7.1 0.8 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain Imm7 PF15585.6 gi|313127577|ref|YP_004037847.1| - 0.11 12.8 0.8 0.43 10.9 0.1 2.2 2 0 0 2 2 2 0 Immunity protein 7 Syntaxin-6_N PF09177.11 gi|313127577|ref|YP_004037847.1| - 0.12 13.0 2.1 1.9 9.1 0.2 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Nmad5 PF18757.1 gi|313127577|ref|YP_004037847.1| - 0.12 12.6 0.2 0.31 11.2 0.1 1.7 2 0 0 2 2 2 0 Nucleotide modification associated domain 5 CENP-F_leu_zip PF10473.9 gi|313127577|ref|YP_004037847.1| - 0.12 12.4 6.3 0.46 10.5 0.3 2.4 3 0 0 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Snapin_Pallidin PF14712.6 gi|313127577|ref|YP_004037847.1| - 0.13 12.7 5.9 4.9 7.7 0.5 2.3 2 0 0 2 2 2 0 Snapin/Pallidin DUF3450 PF11932.8 gi|313127577|ref|YP_004037847.1| - 0.15 11.4 2.7 1.9 7.7 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) BBS2_C PF14782.6 gi|313127577|ref|YP_004037847.1| - 0.17 10.7 0.1 2.3 6.9 0.0 2.0 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal DUF1664 PF07889.12 gi|313127577|ref|YP_004037847.1| - 0.18 11.9 0.4 5.8 7.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) E2F_CC-MB PF16421.5 gi|313127577|ref|YP_004037847.1| - 0.18 12.2 1.1 0.69 10.3 0.1 2.2 2 0 0 2 2 2 0 E2F transcription factor CC-MB domain Cnn_1N PF07989.11 gi|313127577|ref|YP_004037847.1| - 0.2 11.8 5.2 0.65 10.2 0.8 3.0 3 0 0 3 3 3 0 Centrosomin N-terminal motif 1 DUF4600 PF15372.6 gi|313127577|ref|YP_004037847.1| - 0.23 11.9 1.6 1 9.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4600) YojJ PF10372.9 gi|313127577|ref|YP_004037847.1| - 0.4 10.8 2.7 32 4.7 0.2 3.1 3 1 1 4 4 3 0 Bacterial membrane-spanning protein N-terminus DUF2968 PF11180.8 gi|313127577|ref|YP_004037847.1| - 0.44 10.2 2.7 1.2 8.8 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) KfrA_N PF11740.8 gi|313127577|ref|YP_004037847.1| - 0.5 11.0 4.5 1.3 9.7 0.8 2.3 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term KASH_CCD PF14662.6 gi|313127577|ref|YP_004037847.1| - 0.57 10.0 5.0 1.7 8.4 1.6 2.2 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH UPF0242 PF06785.11 gi|313127577|ref|YP_004037847.1| - 0.6 10.2 2.6 15 5.7 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Med4 PF10018.9 gi|313127577|ref|YP_004037847.1| - 0.6 9.7 3.2 1.4 8.6 0.6 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 ZapB PF06005.12 gi|313127577|ref|YP_004037847.1| - 0.82 10.2 9.0 1.3 9.5 3.2 2.3 2 0 0 2 2 2 0 Cell division protein ZapB DivIC PF04977.15 gi|313127577|ref|YP_004037847.1| - 1 9.2 6.5 0.38 10.6 0.8 2.3 2 0 0 2 2 2 0 Septum formation initiator DHR10 PF18595.1 gi|313127577|ref|YP_004037847.1| - 1 9.4 8.9 3.6 7.7 0.2 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain TMF_DNA_bd PF12329.8 gi|313127577|ref|YP_004037847.1| - 1.2 9.1 7.3 5.5 7.1 0.4 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding TMF_TATA_bd PF12325.8 gi|313127577|ref|YP_004037847.1| - 1.6 9.0 7.2 8.5 6.6 1.4 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.21 gi|313127577|ref|YP_004037847.1| - 1.9 8.7 6.0 17 5.6 0.8 2.2 2 0 0 2 2 2 0 bZIP transcription factor XhlA PF10779.9 gi|313127577|ref|YP_004037847.1| - 2 8.7 5.0 5.3 7.3 2.7 2.5 2 0 0 2 2 2 0 Haemolysin XhlA DUF1640 PF07798.11 gi|313127577|ref|YP_004037847.1| - 3 7.8 5.1 3.8 7.5 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1640) ATP-synt_B PF00430.18 gi|313127578|ref|YP_004037848.1| - 0.0086 16.2 27.9 0.0095 16.0 19.1 2.2 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 gi|313127578|ref|YP_004037848.1| - 0.014 15.8 25.5 0.074 13.5 25.5 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|313127578|ref|YP_004037848.1| - 0.019 15.0 18.2 0.77 9.8 11.6 2.1 1 1 1 2 2 2 0 DivIVA protein V-ATPase_G PF03179.15 gi|313127578|ref|YP_004037848.1| - 0.025 15.1 23.7 0.16 12.5 22.4 2.1 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF883 PF05957.13 gi|313127578|ref|YP_004037848.1| - 0.03 14.9 15.8 0.56 10.8 3.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DLP_helical PF18709.1 gi|313127578|ref|YP_004037848.1| - 0.037 13.2 9.5 0.045 13.0 9.5 1.0 1 0 0 1 1 1 0 Dynamin-like helical domain HrpE PF06188.12 gi|313127578|ref|YP_004037848.1| - 0.042 13.7 9.2 0.07 13.0 9.2 1.4 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E UBA_e1_thiolCys PF10585.9 gi|313127578|ref|YP_004037848.1| - 0.12 12.3 3.9 0.11 12.4 3.1 1.4 1 1 0 1 1 1 0 Ubiquitin-activating enzyme active site DUF3552 PF12072.8 gi|313127578|ref|YP_004037848.1| - 0.36 10.2 26.7 0.34 10.3 12.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Caudo_TAP PF02413.17 gi|313127578|ref|YP_004037848.1| - 0.73 10.0 12.6 1.3 9.2 7.6 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK YtxH PF12732.7 gi|313127578|ref|YP_004037848.1| - 0.84 10.2 11.8 1.4 9.5 0.8 2.4 1 1 1 2 2 2 0 YtxH-like protein DUF3435 PF11917.8 gi|313127578|ref|YP_004037848.1| - 0.95 8.3 8.0 1 8.2 8.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Trm5_N PF18093.1 gi|313127578|ref|YP_004037848.1| - 1.9 8.4 4.8 3.9 7.5 0.2 2.4 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain Merozoite_SPAM PF07133.11 gi|313127578|ref|YP_004037848.1| - 2.3 8.2 22.9 3.4 7.6 22.9 1.2 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) AAA_11 PF13086.6 gi|313127578|ref|YP_004037848.1| - 6.8 6.4 9.1 7.7 6.2 9.1 1.1 1 0 0 1 1 1 0 AAA domain Arm-DNA-bind_3 PF13356.6 gi|313127578|ref|YP_004037848.1| - 9.5 6.7 9.0 17 5.9 2.7 2.5 1 1 1 2 2 2 0 Arm DNA-binding domain Methyltransf_11 PF08241.12 gi|313127579|ref|YP_004037849.1| - 3.6e-22 78.8 0.0 5.4e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313127579|ref|YP_004037849.1| - 2.4e-20 73.0 0.0 5.1e-20 72.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127579|ref|YP_004037849.1| - 8e-16 58.2 0.0 1e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313127579|ref|YP_004037849.1| - 8.2e-15 55.0 0.0 1.2e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313127579|ref|YP_004037849.1| - 1.4e-14 54.0 0.0 7.7e-12 45.0 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|313127579|ref|YP_004037849.1| - 5.1e-12 46.4 0.0 7.8e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|313127579|ref|YP_004037849.1| - 7.2e-06 25.3 0.0 8.6e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|313127579|ref|YP_004037849.1| - 1.4e-05 24.9 0.0 3.8e-05 23.5 0.0 1.8 2 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|313127579|ref|YP_004037849.1| - 4.1e-05 23.3 0.0 5.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|313127579|ref|YP_004037849.1| - 0.00063 19.1 0.0 0.00088 18.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|313127579|ref|YP_004037849.1| - 0.0035 16.9 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_PK PF05891.12 gi|313127579|ref|YP_004037849.1| - 0.011 15.2 0.0 0.017 14.7 0.0 1.3 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_9 PF08003.11 gi|313127579|ref|YP_004037849.1| - 0.015 14.2 0.0 0.024 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.16 gi|313127579|ref|YP_004037849.1| - 0.015 13.8 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|313127579|ref|YP_004037849.1| - 0.037 13.7 0.0 0.048 13.3 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) ADPrib_exo_Tox PF03496.14 gi|313127579|ref|YP_004037849.1| - 0.1 11.9 0.0 1.9 7.8 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosyltransferase exoenzyme Corona_6B_7B PF03262.13 gi|313127579|ref|YP_004037849.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Coronavirus 6B/7B protein Pilin_N PF07790.11 gi|313127580|ref|YP_004037850.1| - 3.9e-07 30.9 1.7 5.2e-07 30.5 1.0 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Arch_flagellin PF01917.16 gi|313127580|ref|YP_004037850.1| - 0.18 12.0 7.4 16 5.7 7.4 2.1 1 1 0 1 1 1 0 Archaebacterial flagellin HTH_IclR PF09339.10 gi|313127582|ref|YP_004037852.1| - 0.006 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain ETF PF01012.21 gi|313127583|ref|YP_004037853.1| - 1.9e-35 122.4 1.7 3e-35 121.8 1.7 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|313127584|ref|YP_004037854.1| - 3.7e-37 126.2 0.3 8e-37 125.1 0.3 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|313127584|ref|YP_004037854.1| - 1.7e-30 106.3 0.1 2.7e-30 105.6 0.1 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain polyprenyl_synt PF00348.17 gi|313127585|ref|YP_004037855.1| - 4.2e-53 180.0 0.0 5.1e-53 179.8 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.13 gi|313127586|ref|YP_004037856.1| - 7.9e-115 383.9 6.5 9.4e-115 383.6 6.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Radical_SAM PF04055.21 gi|313127587|ref|YP_004037857.1| - 0.00024 21.5 0.7 0.004 17.5 0.1 2.4 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|313127587|ref|YP_004037857.1| - 0.0022 18.1 0.0 0.0039 17.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PASTA PF03793.19 gi|313127587|ref|YP_004037857.1| - 0.075 12.9 0.3 0.39 10.6 0.6 2.1 2 1 0 2 2 2 0 PASTA domain DUF5518 PF17647.1 gi|313127588|ref|YP_004037858.1| - 1.1e-22 80.4 22.4 1.4e-22 80.0 22.4 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Methyltransf_25 PF13649.6 gi|313127589|ref|YP_004037859.1| - 6.6e-10 39.6 0.0 1e-09 38.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|313127589|ref|YP_004037859.1| - 2.7e-07 31.2 0.0 5.2e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|313127589|ref|YP_004037859.1| - 4.7e-07 29.7 0.0 6.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|313127589|ref|YP_004037859.1| - 9e-07 28.9 0.4 1.3e-06 28.3 0.3 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|313127589|ref|YP_004037859.1| - 1e-06 29.3 0.0 1.7e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|313127589|ref|YP_004037859.1| - 1.1e-05 25.1 0.0 1.5e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|313127589|ref|YP_004037859.1| - 0.0014 17.7 0.0 0.0018 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|313127589|ref|YP_004037859.1| - 0.0035 17.3 0.0 0.0049 16.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|313127589|ref|YP_004037859.1| - 0.0039 16.6 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|313127589|ref|YP_004037859.1| - 0.035 13.4 0.0 0.046 13.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|313127589|ref|YP_004037859.1| - 0.04 13.3 0.0 0.052 12.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|313127589|ref|YP_004037859.1| - 0.067 12.8 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|313127589|ref|YP_004037859.1| - 0.076 12.8 0.0 0.092 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) EptA_B_N PF08019.12 gi|313127590|ref|YP_004037860.1| - 8.8 6.2 10.2 0.58 10.0 0.8 2.7 2 1 1 3 3 3 0 Phosphoethanolamine transferase EptA/EptB TRAM PF01938.20 gi|313127591|ref|YP_004037861.1| - 4.4e-08 33.0 0.6 6.4e-08 32.5 0.6 1.2 1 0 0 1 1 1 1 TRAM domain TFX_C PF14601.6 gi|313127592|ref|YP_004037862.1| - 4.4e-31 106.7 0.1 6.4e-31 106.2 0.1 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|313127592|ref|YP_004037862.1| - 3.4e-06 26.5 1.0 7.2e-06 25.4 1.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|313127592|ref|YP_004037862.1| - 0.00053 20.3 2.7 0.00089 19.6 1.6 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|313127592|ref|YP_004037862.1| - 0.00094 18.7 0.4 0.0016 18.0 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.22 gi|313127592|ref|YP_004037862.1| - 0.0058 16.7 0.3 0.012 15.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|313127592|ref|YP_004037862.1| - 0.0089 15.8 0.2 0.018 14.8 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.7 gi|313127592|ref|YP_004037862.1| - 0.0097 15.9 0.1 0.023 14.7 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|313127592|ref|YP_004037862.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|313127592|ref|YP_004037862.1| - 0.019 14.9 0.6 0.21 11.5 0.5 2.3 1 1 1 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|313127592|ref|YP_004037862.1| - 0.044 13.7 0.1 0.071 13.1 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313127592|ref|YP_004037862.1| - 0.076 12.7 0.3 0.16 11.6 0.1 1.7 1 1 1 2 2 2 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|313127592|ref|YP_004037862.1| - 0.08 12.9 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Response_reg PF00072.24 gi|313127593|ref|YP_004037863.1| - 3.1e-20 72.4 0.0 3.7e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|313127594|ref|YP_004037864.1| - 5e-17 62.1 0.0 1.3e-16 60.7 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|313127594|ref|YP_004037864.1| - 2.6e-14 53.7 0.4 4.1e-14 53.1 0.4 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|313127594|ref|YP_004037864.1| - 2.6e-06 27.8 0.1 4.7e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|313127594|ref|YP_004037864.1| - 3.3e-05 24.5 0.0 5.3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 GAF domain PP2C_2 PF13672.6 gi|313127594|ref|YP_004037864.1| - 0.067 12.8 1.0 0.99 9.0 0.1 2.8 1 1 2 3 3 3 0 Protein phosphatase 2C DIMCO_N PF16844.5 gi|313127594|ref|YP_004037864.1| - 1.8 8.9 6.2 4.2 7.8 0.1 2.9 4 0 0 4 4 4 0 Dinitrogenase iron-molybdenum cofactor, N-terminal NTP_transferase PF00483.23 gi|313127595|ref|YP_004037865.1| - 5.2e-36 124.5 0.0 7.6e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313127595|ref|YP_004037865.1| - 1.6e-08 35.1 0.2 1.6e-08 35.1 0.2 2.2 3 0 0 3 3 3 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|313127595|ref|YP_004037865.1| - 3.7e-05 23.7 0.1 7.3e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Notch PF00066.17 gi|313127597|ref|YP_004037867.1| - 0.04 14.4 0.5 0.065 13.7 0.5 1.3 1 0 0 1 1 1 0 LNR domain tRNA_anti-codon PF01336.25 gi|313127597|ref|YP_004037867.1| - 0.062 13.3 0.0 0.41 10.7 0.0 2.4 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain RHH_1 PF01402.21 gi|313127599|ref|YP_004037869.1| - 5.3e-05 23.0 1.4 8.8e-05 22.3 0.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|313127599|ref|YP_004037869.1| - 0.0026 18.2 0.0 0.0077 16.7 0.0 1.8 2 0 0 2 2 2 1 CopG antitoxin of type II toxin-antitoxin system DUF3562 PF12085.8 gi|313127599|ref|YP_004037869.1| - 0.0037 16.8 0.1 0.0077 15.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) DUF4047 PF13256.6 gi|313127599|ref|YP_004037869.1| - 0.0096 16.1 0.7 0.014 15.6 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4047) Sec2p PF06428.11 gi|313127599|ref|YP_004037869.1| - 0.011 15.7 2.2 0.023 14.7 2.2 1.5 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p Sigma70_r4 PF04545.16 gi|313127599|ref|YP_004037869.1| - 0.049 13.2 0.6 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 AhpC-TSA PF00578.21 gi|313127601|ref|YP_004037871.1| - 4e-26 91.4 0.0 5.4e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313127601|ref|YP_004037871.1| - 3.1e-12 46.4 0.0 3.6e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin MoCF_biosynth PF00994.24 gi|313127604|ref|YP_004037874.1| - 1.1e-30 106.2 0.2 1.6e-30 105.6 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain CBS PF00571.28 gi|313127605|ref|YP_004037875.1| - 4.6e-24 84.6 5.1 2.6e-14 53.4 0.1 2.8 3 0 0 3 3 3 2 CBS domain Peptidase_M50 PF02163.22 gi|313127605|ref|YP_004037875.1| - 7e-15 55.0 10.8 5.2e-09 35.7 0.2 2.9 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|313127605|ref|YP_004037875.1| - 5.3e-05 22.9 4.7 5.3e-05 22.9 4.7 2.2 1 1 0 2 2 2 1 Peptidase M50B-like Cupin_2 PF07883.11 gi|313127606|ref|YP_004037876.1| - 1.3e-16 60.1 0.2 2e-16 59.4 0.2 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|313127606|ref|YP_004037876.1| - 4.4e-07 29.6 0.0 6.8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|313127606|ref|YP_004037876.1| - 9.8e-06 25.5 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|313127606|ref|YP_004037876.1| - 1.3e-05 25.2 0.0 1.6e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|313127606|ref|YP_004037876.1| - 0.0024 17.5 0.1 0.0045 16.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|313127606|ref|YP_004037876.1| - 0.031 14.5 0.0 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like ARD PF03079.14 gi|313127606|ref|YP_004037876.1| - 0.1 12.8 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family DEAD PF00270.29 gi|313127607|ref|YP_004037877.1| - 5.6e-22 78.3 0.0 1.1e-21 77.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|313127607|ref|YP_004037877.1| - 3.9e-13 49.7 0.0 9.5e-13 48.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|313127607|ref|YP_004037877.1| - 1.9e-11 44.3 0.0 3.5e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4428 PF14471.6 gi|313127607|ref|YP_004037877.1| - 0.18 11.7 0.0 0.41 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) CitMHS PF03600.16 gi|313127608|ref|YP_004037878.1| - 1.6e-60 204.9 0.7 2.6e-60 204.2 0.2 1.6 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|313127608|ref|YP_004037878.1| - 1.8e-22 80.1 34.1 1.7e-13 50.5 15.1 3.2 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|313127608|ref|YP_004037878.1| - 2.2e-19 69.0 4.1 8.8e-12 44.7 0.3 2.5 2 0 0 2 2 2 2 TrkA-C domain HTH_AsnC-type PF13404.6 gi|313127611|ref|YP_004037881.1| - 5.5e-05 22.9 0.1 0.00039 20.2 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|313127611|ref|YP_004037881.1| - 0.00017 21.1 0.1 0.00042 19.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|313127611|ref|YP_004037881.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_30 PF13556.6 gi|313127611|ref|YP_004037881.1| - 0.13 12.1 0.0 0.42 10.5 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TrmB PF01978.19 gi|313127611|ref|YP_004037881.1| - 0.14 12.0 0.0 0.4 10.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4157 PF13699.6 gi|313127613|ref|YP_004037883.1| - 3.5e-31 107.3 0.9 8.3e-31 106.1 0.9 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313127613|ref|YP_004037883.1| - 0.022 15.1 0.6 0.05 13.9 0.6 1.7 1 0 0 1 1 1 0 Effector protein Ntox34 PF15606.6 gi|313127613|ref|YP_004037883.1| - 0.37 10.9 2.1 33 4.7 0.0 3.5 3 0 0 3 3 3 0 Bacterial toxin 34 DUF3267 PF11667.8 gi|313127614|ref|YP_004037884.1| - 0.61 10.4 6.0 9.5 6.6 3.1 2.1 2 0 0 2 2 2 0 Putative zincin peptidase Melittin PF01372.17 gi|313127615|ref|YP_004037885.1| - 0.1 12.6 1.6 0.2 11.7 0.3 2.1 2 0 0 2 2 2 0 Melittin TrbC PF04956.13 gi|313127615|ref|YP_004037885.1| - 0.27 11.5 5.1 0.14 12.4 0.4 2.1 1 1 1 2 2 2 0 TrbC/VIRB2 family Big_7 PF17957.1 gi|313127617|ref|YP_004037887.1| - 0.017 15.9 5.1 0.017 15.9 5.1 7.3 7 1 1 8 8 8 0 Bacterial Ig domain CE2_N PF17996.1 gi|313127617|ref|YP_004037887.1| - 0.065 13.2 5.5 0.19 11.8 0.1 3.9 4 0 0 4 4 4 0 Carbohydrate esterase 2 N-terminal Y_Y_Y PF07495.13 gi|313127617|ref|YP_004037887.1| - 0.12 12.3 7.9 0.18 11.8 0.6 4.0 4 0 0 4 4 4 0 Y_Y_Y domain ABC2_membrane_3 PF12698.7 gi|313127617|ref|YP_004037887.1| - 0.12 11.4 4.7 0.12 11.4 0.1 2.4 2 0 0 2 2 2 0 ABC-2 family transporter protein Big_6 PF17936.1 gi|313127617|ref|YP_004037887.1| - 0.18 12.1 0.1 0.18 12.1 0.1 6.0 6 0 0 6 6 6 0 Bacterial Ig domain DUF3992 PF13157.6 gi|313127617|ref|YP_004037887.1| - 0.27 12.0 6.5 0.31 11.8 0.3 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3992) DUF4998 PF16389.5 gi|313127617|ref|YP_004037887.1| - 1.6 8.3 6.7 2.6 7.6 0.3 3.2 3 0 0 3 3 3 0 Domain of unknown function Yip1 PF04893.17 gi|313127618|ref|YP_004037888.1| - 0.0051 16.6 1.2 0.006 16.3 1.2 1.1 1 0 0 1 1 1 1 Yip1 domain Virul_fac_BrkB PF03631.15 gi|313127618|ref|YP_004037888.1| - 0.0064 16.1 0.3 0.0072 16.0 0.3 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF3377 PF11857.8 gi|313127618|ref|YP_004037888.1| - 0.033 14.1 0.0 0.47 10.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) DUF3098 PF11297.8 gi|313127618|ref|YP_004037888.1| - 2.9 7.6 8.3 29 4.4 8.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) SF-assemblin PF06705.11 gi|313127620|ref|YP_004037890.1| - 0.021 14.2 0.1 0.057 12.8 0.1 1.7 1 1 1 2 2 2 0 SF-assemblin/beta giardin Apolipoprotein PF01442.18 gi|313127620|ref|YP_004037890.1| - 0.033 14.1 0.1 3.2 7.6 0.0 3.2 3 1 1 4 4 4 0 Apolipoprotein A1/A4/E domain REF PF05755.12 gi|313127620|ref|YP_004037890.1| - 0.09 12.6 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Rubber elongation factor protein (REF) DUF883 PF05957.13 gi|313127620|ref|YP_004037890.1| - 0.43 11.2 2.2 16 6.2 0.0 3.7 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|313127622|ref|YP_004037892.1| - 0.082 13.4 0.1 1 9.9 0.1 2.5 2 0 0 2 2 2 0 YtxH-like protein DUF4605 PF15378.6 gi|313127624|ref|YP_004037894.1| - 0.26 11.2 4.6 0.63 9.9 3.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4605) SecD-TM1 PF13721.6 gi|313127625|ref|YP_004037895.1| - 0.22 12.0 0.1 0.22 12.0 0.1 1.5 2 0 0 2 2 2 0 SecD export protein N-terminal TM region Pilin_N PF07790.11 gi|313127625|ref|YP_004037895.1| - 0.57 11.1 7.6 6.3 7.8 0.9 2.3 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal DUF4064 PF13273.6 gi|313127626|ref|YP_004037896.1| - 0.0023 18.2 1.0 0.0039 17.4 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4064) Claudin_2 PF13903.6 gi|313127626|ref|YP_004037896.1| - 0.0073 16.1 0.6 0.0097 15.7 0.6 1.1 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction Tetraspanin PF00335.20 gi|313127626|ref|YP_004037896.1| - 0.2 11.3 0.9 0.36 10.5 0.9 1.3 1 0 0 1 1 1 0 Tetraspanin family MazE_antitoxin PF04014.18 gi|313127627|ref|YP_004037897.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin YozE_SAM_like PF06855.12 gi|313127628|ref|YP_004037898.1| - 0.016 15.3 0.0 0.038 14.2 0.0 1.6 1 0 0 1 1 1 0 YozE SAM-like fold Zot PF05707.12 gi|313127629|ref|YP_004037899.1| - 0.0046 16.6 0.2 0.023 14.4 0.0 1.9 1 1 1 2 2 2 1 Zonular occludens toxin (Zot) AAA_22 PF13401.6 gi|313127629|ref|YP_004037899.1| - 0.0049 17.2 0.1 0.02 15.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|313127629|ref|YP_004037899.1| - 0.011 16.2 0.0 0.05 14.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|313127629|ref|YP_004037899.1| - 0.064 13.2 0.1 0.97 9.4 0.1 3.0 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|313127629|ref|YP_004037899.1| - 0.075 13.1 0.1 0.29 11.2 0.0 1.9 3 0 0 3 3 3 0 Helicase HerA, central domain ResIII PF04851.15 gi|313127629|ref|YP_004037899.1| - 0.17 11.9 0.0 0.46 10.5 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|313127630|ref|YP_004037900.1| - 1.5e-16 60.7 0.0 2.7e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313127630|ref|YP_004037900.1| - 2.8e-06 27.8 0.0 7e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313127630|ref|YP_004037900.1| - 4.1e-06 27.3 0.2 0.00046 20.6 0.0 2.4 1 1 0 2 2 2 1 AAA ATPase domain CbbQ_C PF08406.10 gi|313127630|ref|YP_004037900.1| - 0.00013 22.1 0.1 0.00028 21.1 0.1 1.5 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal AAA_3 PF07726.11 gi|313127630|ref|YP_004037900.1| - 0.00025 20.9 0.0 0.0017 18.2 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|313127630|ref|YP_004037900.1| - 0.00031 20.5 0.0 0.035 13.9 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|313127630|ref|YP_004037900.1| - 0.00079 19.4 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|313127630|ref|YP_004037900.1| - 0.0016 18.7 0.1 0.0049 17.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|313127630|ref|YP_004037900.1| - 0.0067 17.0 0.0 0.02 15.4 0.0 1.9 2 0 0 2 2 1 1 AAA domain ATPase_2 PF01637.18 gi|313127630|ref|YP_004037900.1| - 0.015 15.2 0.0 0.37 10.7 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|313127630|ref|YP_004037900.1| - 0.017 15.2 0.0 0.042 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|313127630|ref|YP_004037900.1| - 0.019 15.4 0.0 0.033 14.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|313127630|ref|YP_004037900.1| - 0.023 14.9 0.0 0.061 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|313127630|ref|YP_004037900.1| - 0.025 14.8 0.1 0.11 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain HTH_24 PF13412.6 gi|313127630|ref|YP_004037900.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding IPT PF01745.16 gi|313127630|ref|YP_004037900.1| - 0.032 13.6 0.0 0.071 12.5 0.0 1.5 2 0 0 2 2 1 0 Isopentenyl transferase ABC_tran PF00005.27 gi|313127630|ref|YP_004037900.1| - 0.037 14.5 0.0 0.095 13.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|313127630|ref|YP_004037900.1| - 0.049 14.1 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|313127630|ref|YP_004037900.1| - 0.078 12.7 0.0 0.31 10.7 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain TniB PF05621.11 gi|313127630|ref|YP_004037900.1| - 0.091 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein NB-ARC PF00931.22 gi|313127630|ref|YP_004037900.1| - 0.11 11.7 0.0 0.61 9.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|313127630|ref|YP_004037900.1| - 0.18 11.7 0.1 0.58 10.1 0.1 1.8 1 1 0 1 1 1 0 NACHT domain DZR PF12773.7 gi|313127631|ref|YP_004037901.1| - 0.023 14.7 0.3 0.029 14.4 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon IBR PF01485.21 gi|313127631|ref|YP_004037901.1| - 0.037 14.2 0.1 0.037 14.2 0.1 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-ribbon_3 PF13248.6 gi|313127631|ref|YP_004037901.1| - 0.26 10.8 3.1 3.5 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|313127631|ref|YP_004037901.1| - 0.41 10.3 1.9 16 5.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-CCHC PF00098.23 gi|313127631|ref|YP_004037901.1| - 1.6 9.0 7.4 0.39 10.9 1.5 2.1 2 0 0 2 2 2 0 Zinc knuckle VWA PF00092.28 gi|313127632|ref|YP_004037902.1| - 1.8e-05 25.0 0.0 9.6e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|313127632|ref|YP_004037902.1| - 3.7e-05 24.3 0.0 8.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain GGDEF_2 PF17853.1 gi|313127633|ref|YP_004037903.1| - 0.011 16.0 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 GGDEF-like domain Pro-NT_NN PF07421.11 gi|313127633|ref|YP_004037903.1| - 0.16 12.2 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 Neurotensin/neuromedin N precursor CPP1-like PF11833.8 gi|313127635|ref|YP_004037905.1| - 0.37 10.4 3.0 5.2 6.7 0.0 2.1 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF3180 PF11377.8 gi|313127635|ref|YP_004037905.1| - 1 9.5 10.7 6 7.0 6.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) Phage_integrase PF00589.22 gi|313127637|ref|YP_004037907.1| - 5e-09 36.2 0.0 2e-08 34.3 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family DUF2188 PF09954.9 gi|313127640|ref|YP_004037910.1| - 2.8e-13 49.8 1.0 3.1e-13 49.7 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) Peptidase_M10 PF00413.24 gi|313127641|ref|YP_004037911.1| - 7.4e-10 38.9 0.6 0.00083 19.2 0.1 2.5 2 1 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.6 gi|313127641|ref|YP_004037911.1| - 0.00088 19.8 0.1 0.0062 17.0 0.0 2.1 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M54 PF07998.11 gi|313127641|ref|YP_004037911.1| - 0.00094 19.2 0.1 0.0016 18.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M57 PF12388.8 gi|313127641|ref|YP_004037911.1| - 0.0016 18.1 0.5 0.0024 17.5 0.1 1.5 2 0 0 2 2 2 1 Dual-action HEIGH metallo-peptidase Reprolysin_5 PF13688.6 gi|313127641|ref|YP_004037911.1| - 0.012 15.8 2.7 0.027 14.6 0.3 2.2 1 1 1 2 2 2 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|313127641|ref|YP_004037911.1| - 0.018 15.0 0.2 0.043 13.7 0.2 1.6 1 1 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_2 PF13574.6 gi|313127641|ref|YP_004037911.1| - 0.076 12.9 0.3 0.13 12.2 0.3 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Cdc6_C PF09079.11 gi|313127642|ref|YP_004037912.1| - 0.0019 18.1 0.1 0.0025 17.7 0.1 1.2 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain HTH_27 PF13463.6 gi|313127642|ref|YP_004037912.1| - 0.0028 18.1 0.1 0.0045 17.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|313127642|ref|YP_004037912.1| - 0.0056 16.2 0.0 0.17 11.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|313127642|ref|YP_004037912.1| - 0.0081 16.1 0.2 0.013 15.5 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.14 gi|313127642|ref|YP_004037912.1| - 0.011 15.6 0.9 0.034 14.1 0.7 1.8 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Mrr_N PF14338.6 gi|313127642|ref|YP_004037912.1| - 0.029 14.5 0.1 0.035 14.2 0.1 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain DUF4364 PF14277.6 gi|313127642|ref|YP_004037912.1| - 0.12 12.2 0.1 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_Crp_2 PF13545.6 gi|313127642|ref|YP_004037912.1| - 0.15 12.1 0.2 0.18 11.8 0.2 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain ADK_lid PF05191.14 gi|313127643|ref|YP_004037913.1| - 0.0061 16.5 0.2 0.022 14.8 0.0 1.9 2 0 0 2 2 2 1 Adenylate kinase, active site lid RE_HaeIII PF09556.10 gi|313127643|ref|YP_004037913.1| - 0.25 10.4 0.0 0.31 10.1 0.0 1.1 1 0 0 1 1 1 0 HaeIII restriction endonuclease DnaJ PF00226.31 gi|313127645|ref|YP_004037915.1| - 0.00043 20.4 0.0 0.00084 19.4 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Phage_integrase PF00589.22 gi|313127646|ref|YP_004037916.1| - 1.4e-07 31.5 0.0 2.9e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|313127646|ref|YP_004037916.1| - 0.0038 17.5 0.0 0.0084 16.4 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|313127646|ref|YP_004037916.1| - 0.0098 16.2 0.0 0.026 14.8 0.0 1.7 1 0 0 1 1 1 1 Phage integrase SAM-like domain NT5C PF06941.12 gi|313127646|ref|YP_004037916.1| - 0.075 12.9 0.5 0.28 11.0 0.1 2.2 2 1 1 3 3 3 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF4013 PF13197.6 gi|313127647|ref|YP_004037917.1| - 0.0026 17.6 36.8 0.013 15.3 16.7 3.1 2 1 1 3 3 3 3 Protein of unknown function (DUF4013) Col_cuticle_N PF01484.17 gi|313127647|ref|YP_004037917.1| - 0.038 14.1 0.3 0.038 14.1 0.3 4.2 5 0 0 5 5 5 0 Nematode cuticle collagen N-terminal domain TMEM154 PF15102.6 gi|313127647|ref|YP_004037917.1| - 0.23 11.4 0.1 0.48 10.3 0.1 1.5 1 0 0 1 1 1 0 TMEM154 protein family Fer2 PF00111.27 gi|313127648|ref|YP_004037918.1| - 6.9e-12 45.2 0.0 1.3e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.31 gi|313127648|ref|YP_004037918.1| - 1.7e-09 37.7 0.0 3.4e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Cnd1 PF12717.7 gi|313127649|ref|YP_004037919.1| - 8.4e-07 29.2 0.0 1.5e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|313127649|ref|YP_004037919.1| - 3.8e-05 24.0 7.0 0.00036 20.9 0.7 3.6 2 1 2 4 4 4 2 HEAT repeats Adaptin_N PF01602.20 gi|313127649|ref|YP_004037919.1| - 4.1e-05 22.3 0.0 7.8e-05 21.4 0.0 1.4 1 1 0 1 1 1 1 Adaptin N terminal region DUF1869 PF08956.10 gi|313127649|ref|YP_004037919.1| - 0.15 12.0 0.1 0.4 10.6 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1869) Cas_Cas4 PF01930.17 gi|313127650|ref|YP_004037920.1| - 0.00025 21.2 0.0 0.0052 16.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF83 Sua5_yciO_yrdC PF01300.18 gi|313127651|ref|YP_004037921.1| - 6.5e-49 165.9 0.0 7.5e-49 165.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination AhpC-TSA PF00578.21 gi|313127652|ref|YP_004037922.1| - 4.4e-18 65.4 0.0 5.5e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|313127652|ref|YP_004037922.1| - 1.7e-06 27.8 0.0 5.4e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|313127652|ref|YP_004037922.1| - 0.036 14.2 0.0 0.51 10.5 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme GST_N_3 PF13417.6 gi|313127653|ref|YP_004037923.1| - 4.2e-15 55.9 0.0 5.1e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|313127653|ref|YP_004037923.1| - 4.2e-13 49.3 0.2 5.6e-13 48.9 0.2 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|313127653|ref|YP_004037923.1| - 1.4e-12 47.7 0.0 1.7e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|313127653|ref|YP_004037923.1| - 0.00013 22.3 0.0 0.00016 22.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Tom37 PF10568.9 gi|313127653|ref|YP_004037923.1| - 0.11 12.8 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein Thioredoxin_2 PF13098.6 gi|313127653|ref|YP_004037923.1| - 0.17 12.3 0.0 0.19 12.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain DUF21 PF01595.20 gi|313127654|ref|YP_004037924.1| - 2.3e-49 167.5 0.8 3.2e-49 167.0 0.8 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|313127654|ref|YP_004037924.1| - 5.5e-19 68.0 2.0 5.5e-19 68.0 2.0 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|313127654|ref|YP_004037924.1| - 1.7e-12 47.6 3.1 4.6e-07 30.2 0.1 2.7 2 0 0 2 2 2 2 CBS domain Rrp44_S1 PF17215.3 gi|313127654|ref|YP_004037924.1| - 0.057 13.4 0.2 6.4 6.8 0.1 2.7 2 0 0 2 2 2 0 S1 domain PHO4 PF01384.20 gi|313127655|ref|YP_004037925.1| - 1.3e-48 165.8 27.1 1.3e-48 165.8 27.1 1.4 1 1 0 1 1 1 1 Phosphate transporter family TMEM119 PF15724.5 gi|313127656|ref|YP_004037926.1| - 0.13 12.3 1.8 0.15 12.1 1.8 1.0 1 0 0 1 1 1 0 TMEM119 family DUF4083 PF13314.6 gi|313127656|ref|YP_004037926.1| - 1.5 8.8 5.4 2 8.4 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) HTH_20 PF12840.7 gi|313127657|ref|YP_004037927.1| - 5.9e-15 55.1 0.1 1.1e-14 54.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313127657|ref|YP_004037927.1| - 4.3e-06 26.5 0.0 9.2e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|313127657|ref|YP_004037927.1| - 1e-05 25.3 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|313127657|ref|YP_004037927.1| - 4.7e-05 22.8 0.0 8.2e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|313127657|ref|YP_004037927.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313127657|ref|YP_004037927.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|313127657|ref|YP_004037927.1| - 0.018 15.1 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DprA_WH PF17782.1 gi|313127657|ref|YP_004037927.1| - 0.019 15.0 3.7 0.053 13.6 1.8 2.8 2 1 0 2 2 2 0 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|313127657|ref|YP_004037927.1| - 0.022 14.7 0.0 0.059 13.4 0.0 1.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain DUF2513 PF10711.9 gi|313127657|ref|YP_004037927.1| - 0.03 14.6 0.0 0.059 13.7 0.0 1.6 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) ArsR PF09824.9 gi|313127657|ref|YP_004037927.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator Med13_C PF06333.12 gi|313127657|ref|YP_004037927.1| - 7 5.8 9.6 12 5.0 9.6 1.4 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Metallophos_2 PF12850.7 gi|313127658|ref|YP_004037928.1| - 1.1e-24 87.4 0.2 1.4e-24 87.1 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|313127658|ref|YP_004037928.1| - 8.4e-05 23.2 0.0 0.24 11.9 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Cation_efflux PF01545.21 gi|313127659|ref|YP_004037929.1| - 3.6e-27 95.4 7.8 5.4e-27 94.8 7.8 1.3 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|313127659|ref|YP_004037929.1| - 8.8e-08 32.2 0.3 1.6e-07 31.4 0.3 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Beta_elim_lyase PF01212.21 gi|313127660|ref|YP_004037930.1| - 1e-90 304.0 0.5 1.2e-90 303.8 0.5 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|313127660|ref|YP_004037930.1| - 7.2e-11 41.9 0.0 9.3e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|313127660|ref|YP_004037930.1| - 0.0002 20.8 0.0 0.023 14.0 0.0 2.4 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|313127660|ref|YP_004037930.1| - 0.058 11.9 0.1 0.12 10.8 0.1 1.6 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|313127660|ref|YP_004037930.1| - 0.092 11.4 0.0 0.17 10.5 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class-III DoxX PF07681.12 gi|313127661|ref|YP_004037931.1| - 3.7e-06 27.4 9.3 3.7e-06 27.4 9.3 2.1 2 1 0 2 2 2 1 DoxX DoxD PF04173.13 gi|313127661|ref|YP_004037931.1| - 3.1e-05 24.0 4.3 4.4e-05 23.4 4.3 1.3 1 0 0 1 1 1 1 TQO small subunit DoxD Peptidase_M29 PF02073.15 gi|313127662|ref|YP_004037932.1| - 8.9e-72 242.1 0.3 1.1e-71 241.8 0.3 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) zf-C3HC4_3 PF13920.6 gi|313127663|ref|YP_004037933.1| - 0.015 15.2 0.1 0.015 15.2 0.1 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PyrI_C PF02748.15 gi|313127663|ref|YP_004037933.1| - 0.049 13.6 0.4 0.057 13.3 0.3 1.3 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zinc_ribbon_10 PF10058.9 gi|313127663|ref|YP_004037933.1| - 0.06 13.1 0.1 0.064 13.0 0.1 1.1 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Di19 PF05605.12 gi|313127663|ref|YP_004037933.1| - 0.073 13.4 0.1 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding AsnC_trans_reg PF01037.21 gi|313127664|ref|YP_004037934.1| - 2.3e-12 46.7 0.0 4e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|313127664|ref|YP_004037934.1| - 3.9e-12 45.5 0.1 7.3e-12 44.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313127664|ref|YP_004037934.1| - 1.7e-08 34.2 0.1 4.2e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|313127664|ref|YP_004037934.1| - 2.5e-08 33.6 0.3 4.4e-08 32.8 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313127664|ref|YP_004037934.1| - 5.4e-07 29.5 0.1 3.1e-06 27.0 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|313127664|ref|YP_004037934.1| - 5.7e-07 29.5 0.7 1.9e-06 27.8 0.1 2.1 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|313127664|ref|YP_004037934.1| - 6.2e-05 22.7 0.1 0.00044 19.9 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|313127664|ref|YP_004037934.1| - 6.4e-05 22.8 0.0 0.00016 21.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|313127664|ref|YP_004037934.1| - 6.6e-05 22.5 0.2 0.00017 21.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|313127664|ref|YP_004037934.1| - 7.2e-05 22.8 0.0 0.00021 21.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313127664|ref|YP_004037934.1| - 0.00016 21.6 0.0 0.00029 20.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|313127664|ref|YP_004037934.1| - 0.00017 21.3 0.0 0.00044 20.0 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.22 gi|313127664|ref|YP_004037934.1| - 0.00022 21.1 0.1 0.00091 19.1 0.0 2.0 3 0 0 3 3 3 1 MarR family MarR_2 PF12802.7 gi|313127664|ref|YP_004037934.1| - 0.00049 19.9 0.1 0.0011 18.9 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.10 gi|313127664|ref|YP_004037934.1| - 0.0015 18.3 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313127664|ref|YP_004037934.1| - 0.0033 17.6 0.0 0.0086 16.3 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.13 gi|313127664|ref|YP_004037934.1| - 0.0042 17.7 0.0 0.025 15.1 0.0 2.2 3 0 0 3 3 2 1 Mga helix-turn-helix domain HTH_50 PF18024.1 gi|313127664|ref|YP_004037934.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|313127664|ref|YP_004037934.1| - 0.006 16.3 0.1 0.016 14.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313127664|ref|YP_004037934.1| - 0.014 15.8 0.2 0.073 13.6 0.0 2.2 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|313127664|ref|YP_004037934.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain HTH_47 PF16221.5 gi|313127664|ref|YP_004037934.1| - 0.017 14.7 0.1 0.04 13.5 0.1 1.6 1 0 0 1 1 1 0 winged helix-turn-helix HTH_40 PF14493.6 gi|313127664|ref|YP_004037934.1| - 0.026 15.0 0.0 0.059 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313127664|ref|YP_004037934.1| - 0.032 13.7 0.0 0.069 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|313127664|ref|YP_004037934.1| - 0.041 13.9 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_41 PF14502.6 gi|313127664|ref|YP_004037934.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|313127664|ref|YP_004037934.1| - 0.053 13.9 0.0 0.16 12.3 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator RPA_C PF08784.11 gi|313127664|ref|YP_004037934.1| - 0.07 13.8 0.0 1.1 10.0 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_36 PF13730.6 gi|313127664|ref|YP_004037934.1| - 0.072 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|313127664|ref|YP_004037934.1| - 0.073 13.0 0.1 0.18 11.8 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|313127664|ref|YP_004037934.1| - 0.1 12.1 0.3 0.23 11.0 0.0 1.7 2 0 0 2 2 1 0 CodY helix-turn-helix domain Cdc6_C PF09079.11 gi|313127664|ref|YP_004037934.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain GerE PF00196.19 gi|313127664|ref|YP_004037934.1| - 0.13 11.9 0.1 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.6 gi|313127664|ref|YP_004037934.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_7 PF02796.15 gi|313127664|ref|YP_004037934.1| - 0.16 12.1 0.0 0.44 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Gln-synt_C PF00120.24 gi|313127665|ref|YP_004037935.1| - 1.2e-140 468.4 0.1 1.6e-140 468.0 0.1 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|313127665|ref|YP_004037935.1| - 1e-31 108.5 0.0 2.3e-31 107.3 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|313127665|ref|YP_004037935.1| - 0.0012 18.7 0.0 0.0099 15.7 0.0 2.3 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain PAP2 PF01569.21 gi|313127666|ref|YP_004037936.1| - 9.3e-14 51.4 14.1 2.9e-13 49.7 8.7 3.3 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|313127666|ref|YP_004037936.1| - 1e-08 35.1 4.8 1e-08 35.1 4.8 1.8 2 0 0 2 2 2 1 PAP2 superfamily Virul_fac_BrkB PF03631.15 gi|313127667|ref|YP_004037937.1| - 3.1e-39 135.2 28.1 3.1e-39 135.2 28.1 2.0 2 0 0 2 2 2 1 Virulence factor BrkB ABC_tran_CTD PF16326.5 gi|313127667|ref|YP_004037937.1| - 0.19 12.0 0.2 0.3 11.4 0.2 1.3 1 0 0 1 1 1 0 ABC transporter C-terminal domain TRM PF02005.16 gi|313127668|ref|YP_004037938.1| - 5e-95 318.8 0.0 6e-95 318.6 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|313127668|ref|YP_004037938.1| - 4.4e-05 23.1 0.0 7.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|313127668|ref|YP_004037938.1| - 9e-05 22.0 0.1 0.00013 21.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|313127668|ref|YP_004037938.1| - 0.00075 20.2 0.1 0.0018 18.9 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Zn-ribbon_8 PF09723.10 gi|313127668|ref|YP_004037938.1| - 0.00079 19.5 1.4 0.0019 18.2 1.4 1.7 1 0 0 1 1 1 1 Zinc ribbon domain Cons_hypoth95 PF03602.15 gi|313127668|ref|YP_004037938.1| - 0.006 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|313127668|ref|YP_004037938.1| - 0.072 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|313127668|ref|YP_004037938.1| - 0.095 12.5 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain PhnA_Zn_Ribbon PF08274.12 gi|313127668|ref|YP_004037938.1| - 0.21 11.6 1.4 0.89 9.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon SWIM PF04434.17 gi|313127669|ref|YP_004037939.1| - 0.00022 20.8 0.1 0.00034 20.2 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger Pribosyltran_N PF13793.6 gi|313127671|ref|YP_004037941.1| - 3.4e-20 72.1 0.0 2.1e-19 69.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|313127671|ref|YP_004037941.1| - 7.9e-13 48.2 2.7 2.5e-12 46.6 0.7 2.5 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|313127671|ref|YP_004037941.1| - 5.3e-08 33.1 0.9 5.3e-08 33.1 0.9 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|313127671|ref|YP_004037941.1| - 5.8e-05 22.6 0.1 9.1e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|313127671|ref|YP_004037941.1| - 0.00099 18.6 0.1 0.0055 16.2 0.3 2.0 1 1 1 2 2 2 1 Phosphoribosyl transferase UDG PF03167.19 gi|313127673|ref|YP_004037943.1| - 7.7e-26 90.9 0.0 9.5e-26 90.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PLDc_N PF13396.6 gi|313127674|ref|YP_004037944.1| - 2.4e-08 33.8 1.3 2.4e-08 33.8 1.3 2.6 2 1 1 3 3 3 1 Phospholipase_D-nuclease N-terminal MSP1a PF11670.8 gi|313127674|ref|YP_004037944.1| - 3.1 7.0 4.9 1.9 7.7 0.1 2.1 1 1 1 2 2 2 0 Major surface protein 1a (MSP1a) DUF1634 PF07843.11 gi|313127674|ref|YP_004037944.1| - 4.8 7.3 9.2 1.2 9.3 5.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1634) DUF5379 PF17350.2 gi|313127675|ref|YP_004037945.1| - 0.0093 16.2 1.2 0.0093 16.2 1.2 1.8 2 0 0 2 2 2 1 Family of unknown function (DUF5379) DUF460 PF04312.13 gi|313127676|ref|YP_004037946.1| - 7.2e-50 168.4 0.5 3.2e-49 166.2 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|313127676|ref|YP_004037946.1| - 2.4e-05 24.6 0.4 2.4e-05 24.6 0.4 3.3 3 1 0 3 3 2 1 Actinobacteria/chloroflexi VLRF1 release factor Exonuc_VII_L PF02601.15 gi|313127676|ref|YP_004037946.1| - 0.0048 16.5 3.0 0.0048 16.5 3.0 1.8 2 0 0 2 2 1 1 Exonuclease VII, large subunit FAM76 PF16046.5 gi|313127676|ref|YP_004037946.1| - 0.0058 16.0 6.8 0.0058 16.0 6.8 1.5 2 0 0 2 2 1 1 FAM76 protein BtrH_N PF14399.6 gi|313127676|ref|YP_004037946.1| - 0.0083 16.4 0.1 0.87 9.8 0.0 2.9 3 0 0 3 3 3 1 Butirosin biosynthesis protein H, N-terminal FlaC_arch PF05377.11 gi|313127676|ref|YP_004037946.1| - 0.011 16.1 10.1 0.079 13.4 1.1 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|313127676|ref|YP_004037946.1| - 0.019 15.0 8.1 0.07 13.2 8.1 2.0 1 0 0 1 1 1 0 Laminin Domain II TMF_DNA_bd PF12329.8 gi|313127676|ref|YP_004037946.1| - 0.048 13.7 26.4 0.025 14.6 17.4 2.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.19 gi|313127676|ref|YP_004037946.1| - 0.087 10.7 9.4 0.14 10.0 9.4 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Prefoldin PF02996.17 gi|313127676|ref|YP_004037946.1| - 0.13 12.2 8.3 2 8.4 3.3 2.6 2 0 0 2 2 2 0 Prefoldin subunit SlyX PF04102.12 gi|313127676|ref|YP_004037946.1| - 0.15 12.7 12.5 3.3e+02 2.0 12.5 3.3 1 1 0 1 1 1 0 SlyX BLOC1_2 PF10046.9 gi|313127676|ref|YP_004037946.1| - 0.27 11.5 7.0 1.6 9.1 0.7 2.7 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HMMR_N PF15905.5 gi|313127676|ref|YP_004037946.1| - 0.29 10.6 20.4 0.51 9.8 20.4 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DivIC PF04977.15 gi|313127676|ref|YP_004037946.1| - 0.31 10.8 17.5 0.055 13.2 4.1 3.2 1 1 1 2 2 2 0 Septum formation initiator STAT_alpha PF01017.20 gi|313127676|ref|YP_004037946.1| - 0.32 10.9 6.9 0.8 9.6 6.9 1.6 1 0 0 1 1 1 0 STAT protein, all-alpha domain TACC_C PF05010.14 gi|313127676|ref|YP_004037946.1| - 0.41 10.4 22.7 0.048 13.5 16.0 2.3 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Semialdhyde_dhC PF02774.18 gi|313127676|ref|YP_004037946.1| - 0.59 10.2 3.1 1.4 9.0 2.0 2.1 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, dimerisation domain FapA PF03961.13 gi|313127676|ref|YP_004037946.1| - 0.68 8.5 9.7 1.3 7.6 9.7 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF1664 PF07889.12 gi|313127676|ref|YP_004037946.1| - 1.5 8.9 5.9 11 6.1 5.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) GAS PF13851.6 gi|313127676|ref|YP_004037946.1| - 2.3 7.5 21.4 1 8.7 12.9 2.2 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding MCC-bdg_PDZ PF10506.9 gi|313127676|ref|YP_004037946.1| - 2.9 8.0 11.1 8.7 6.4 2.4 3.1 3 0 0 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome bZIP_1 PF00170.21 gi|313127676|ref|YP_004037946.1| - 3 8.0 22.9 2.1 8.5 2.8 2.7 2 0 0 2 2 2 0 bZIP transcription factor Spc7 PF08317.11 gi|313127676|ref|YP_004037946.1| - 3.3 6.5 22.2 2.7 6.8 17.9 2.1 1 1 0 1 1 1 0 Spc7 kinetochore protein ADIP PF11559.8 gi|313127676|ref|YP_004037946.1| - 3.5 7.7 22.7 1.1 9.4 13.6 2.6 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding HAUS-augmin3 PF14932.6 gi|313127676|ref|YP_004037946.1| - 3.8 7.0 20.1 9.2 5.8 18.6 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 TMCO5 PF14992.6 gi|313127676|ref|YP_004037946.1| - 4.1 6.9 26.9 19 4.7 12.9 2.3 1 1 1 2 2 2 0 TMCO5 family WDCP PF15390.6 gi|313127676|ref|YP_004037946.1| - 5.2 5.3 6.6 7.8 4.7 6.6 1.2 1 0 0 1 1 1 0 WD repeat and coiled-coil-containing protein family Prefoldin_2 PF01920.20 gi|313127676|ref|YP_004037946.1| - 6.6 6.7 17.6 4.5 7.3 6.5 2.7 1 1 1 2 2 2 0 Prefoldin subunit Spc24 PF08286.11 gi|313127676|ref|YP_004037946.1| - 7.9 6.8 17.2 13 6.1 4.9 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DASH_Spc19 PF08287.11 gi|313127676|ref|YP_004037946.1| - 8 6.3 26.6 0.52 10.2 21.3 1.8 2 0 0 2 2 1 0 Spc19 Band_7 PF01145.25 gi|313127677|ref|YP_004037947.1| - 1e-30 107.1 4.5 1e-30 107.1 4.5 1.5 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|313127677|ref|YP_004037947.1| - 0.0025 17.6 0.1 0.0046 16.7 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family RE_NgoFVII PF09565.10 gi|313127677|ref|YP_004037947.1| - 0.033 13.5 0.4 0.065 12.5 0.0 1.6 2 0 0 2 2 2 0 NgoFVII restriction endonuclease V-ATPase_G_2 PF16999.5 gi|313127677|ref|YP_004037947.1| - 0.15 12.5 12.3 2.8 8.4 8.2 2.4 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit PhzC-PhzF PF02567.16 gi|313127679|ref|YP_004037949.1| - 3.7e-64 216.9 0.0 4.1e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Lactamase_B_2 PF12706.7 gi|313127680|ref|YP_004037950.1| - 4.3e-24 85.2 0.9 1.7e-21 76.6 0.9 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313127680|ref|YP_004037950.1| - 3.4e-16 59.8 7.6 1.5e-14 54.4 7.6 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|313127680|ref|YP_004037950.1| - 0.00037 20.1 0.0 0.00064 19.3 0.0 1.3 1 0 0 1 1 1 1 tRNase Z endonuclease SHOCT PF09851.9 gi|313127681|ref|YP_004037951.1| - 1.3e-08 34.3 1.0 4.7e-08 32.5 0.6 2.0 2 0 0 2 2 2 1 Short C-terminal domain SBF PF01758.16 gi|313127681|ref|YP_004037951.1| - 0.0069 16.1 0.6 0.0092 15.7 0.6 1.1 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF1707 PF08044.11 gi|313127681|ref|YP_004037951.1| - 0.012 15.6 0.2 0.025 14.6 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF4719 PF15843.5 gi|313127681|ref|YP_004037951.1| - 0.013 15.6 0.2 0.024 14.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4719) GvpG PF05120.12 gi|313127681|ref|YP_004037951.1| - 0.034 14.2 0.8 0.053 13.5 0.8 1.3 1 0 0 1 1 1 0 Gas vesicle protein G SPC12 PF06645.13 gi|313127681|ref|YP_004037951.1| - 0.068 13.3 4.4 0.098 12.8 4.4 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Phage_holin_3_6 PF07332.11 gi|313127681|ref|YP_004037951.1| - 0.068 13.2 2.0 0.1 12.6 2.0 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III N6_N4_Mtase PF01555.18 gi|313116829|ref|YP_004037953.1| - 8.8e-38 130.3 0.1 4.1e-28 98.6 0.1 2.7 2 1 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|313116829|ref|YP_004037953.1| - 0.04 13.6 0.0 5.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 HATPase_c_3 PF13589.6 gi|313116830|ref|YP_004037954.1| - 1.5e-05 24.8 0.0 3.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CARDB PF07705.11 gi|313116831|ref|YP_004037955.1| - 3.9e-10 39.9 17.4 0.0056 16.9 0.3 4.6 4 0 0 4 4 4 4 CARDB DUF4352 PF11611.8 gi|313116831|ref|YP_004037955.1| - 0.0035 17.6 8.1 0.23 11.7 0.1 4.4 4 0 0 4 4 4 1 Domain of unknown function (DUF4352) DUF1833 PF08875.11 gi|313116831|ref|YP_004037955.1| - 0.039 13.5 0.0 0.18 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1833) BsuPI PF12690.7 gi|313116831|ref|YP_004037955.1| - 0.061 13.4 2.4 2.8 8.0 0.0 4.0 4 0 0 4 4 4 0 Intracellular proteinase inhibitor HEAT_2 PF13646.6 gi|313116834|ref|YP_004037958.1| - 7.2e-34 116.0 47.4 3.4e-11 43.4 3.2 8.0 2 2 5 8 8 8 7 HEAT repeats Adaptin_N PF01602.20 gi|313116834|ref|YP_004037958.1| - 1.5e-22 79.9 0.0 1.4e-05 23.9 0.0 5.3 1 1 5 6 6 6 4 Adaptin N terminal region Cnd1 PF12717.7 gi|313116834|ref|YP_004037958.1| - 1.9e-22 80.0 0.3 2.6e-05 24.3 0.1 5.4 4 1 1 5 5 5 4 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.22 gi|313116834|ref|YP_004037958.1| - 1.3e-21 74.8 17.7 0.00037 20.5 0.1 9.7 11 0 0 11 11 10 4 HEAT repeat HEAT_EZ PF13513.6 gi|313116834|ref|YP_004037958.1| - 2.7e-21 75.7 41.0 2.7e-06 27.7 2.3 11.3 7 4 7 14 14 14 7 HEAT-like repeat HEAT_PBS PF03130.16 gi|313116834|ref|YP_004037958.1| - 1.2e-08 34.9 48.8 0.012 16.2 0.7 11.0 13 0 0 13 13 9 4 PBS lyase HEAT-like repeat DNA_alkylation PF08713.11 gi|313116834|ref|YP_004037958.1| - 3.9e-07 30.0 0.7 0.22 11.2 0.0 4.2 3 1 1 4 4 4 2 DNA alkylation repair enzyme RTP1_C1 PF10363.9 gi|313116834|ref|YP_004037958.1| - 3.3e-05 24.0 0.1 1.7 8.9 0.0 5.0 3 2 1 4 4 4 1 Required for nuclear transport of RNA pol II C-terminus 1 Vac14_Fab1_bd PF12755.7 gi|313116834|ref|YP_004037958.1| - 5.7e-05 23.6 0.0 6.4 7.4 0.0 4.4 3 1 2 5 5 5 2 Vacuolar 14 Fab1-binding region Ecm29 PF13001.7 gi|313116834|ref|YP_004037958.1| - 0.001 17.8 0.0 11 4.5 0.0 4.2 4 1 0 4 4 4 0 Proteasome stabiliser Arm PF00514.23 gi|313116834|ref|YP_004037958.1| - 0.0045 17.0 9.0 0.54 10.4 0.0 6.9 8 0 0 8 8 7 1 Armadillo/beta-catenin-like repeat API5 PF05918.11 gi|313116834|ref|YP_004037958.1| - 0.0074 15.2 4.0 9.2 5.0 0.1 4.1 3 2 1 4 4 4 0 Apoptosis inhibitory protein 5 (API5) DUF3385 PF11865.8 gi|313116834|ref|YP_004037958.1| - 0.0076 16.2 0.1 5 7.0 0.0 4.2 2 2 1 3 3 3 1 Domain of unknown function (DUF3385) dsDNA_bind PF01984.20 gi|313116834|ref|YP_004037958.1| - 0.0088 16.3 1.1 36 4.7 0.0 5.3 5 1 1 6 6 6 0 Double-stranded DNA-binding domain DUF5578 PF17741.1 gi|313116834|ref|YP_004037958.1| - 0.014 14.9 0.0 4.5 6.6 0.0 3.2 2 1 0 3 3 3 0 Family of unknown function (DUF5578) CLASP_N PF12348.8 gi|313116834|ref|YP_004037958.1| - 0.018 14.6 0.1 1.2 8.6 0.0 2.9 3 0 0 3 3 3 0 CLASP N terminal CDC37_N PF03234.14 gi|313116834|ref|YP_004037958.1| - 0.026 15.4 0.0 0.082 13.8 0.0 1.8 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding MMS19_C PF12460.8 gi|313116834|ref|YP_004037958.1| - 0.029 13.5 1.0 3.8 6.5 0.2 3.0 3 1 0 3 3 3 0 RNAPII transcription regulator C-terminal TIP120 PF08623.10 gi|313116834|ref|YP_004037958.1| - 0.045 13.5 0.3 13 5.5 0.0 3.2 3 0 0 3 3 3 0 TATA-binding protein interacting (TIP20) DUF4042 PF13251.6 gi|313116834|ref|YP_004037958.1| - 0.048 13.4 2.6 12 5.5 0.0 3.8 3 1 2 5 5 4 0 Domain of unknown function (DUF4042) Cohesin_HEAT PF12765.7 gi|313116834|ref|YP_004037958.1| - 0.46 10.8 10.4 18 5.7 0.1 5.4 3 1 2 5 5 5 0 HEAT repeat associated with sister chromatid cohesion DUF3560 PF12083.8 gi|313116834|ref|YP_004037958.1| - 0.46 10.6 2.6 64 3.7 0.1 4.2 3 1 2 5 5 4 0 Domain of unknown function (DUF3560) FdhE PF04216.12 gi|313116834|ref|YP_004037958.1| - 5.1 6.9 7.7 1.9 8.3 1.0 3.0 3 0 0 3 3 3 0 Protein involved in formate dehydrogenase formation DUF2262 PF10020.9 gi|313116835|ref|YP_004037959.1| - 0.00031 21.2 0.0 0.00033 21.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2262) Phage_integrase PF00589.22 gi|313116836|ref|YP_004037960.1| - 0.00016 21.6 0.2 0.00016 21.5 0.2 1.1 1 0 0 1 1 1 1 Phage integrase family UvrD_C_2 PF13538.6 gi|313116837|ref|YP_004037961.1| - 1.1e-08 34.7 0.1 2.2e-08 33.8 0.1 1.5 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C PF13361.6 gi|313116837|ref|YP_004037961.1| - 7.5e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|313116837|ref|YP_004037961.1| - 0.00026 21.3 0.0 0.00091 19.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|313116837|ref|YP_004037961.1| - 0.00043 20.1 0.0 0.16 11.7 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|313116837|ref|YP_004037961.1| - 0.014 14.8 0.0 4 6.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.9 gi|313116837|ref|YP_004037961.1| - 0.12 11.6 0.0 0.27 10.4 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.21 gi|313116837|ref|YP_004037961.1| - 0.2 11.1 0.0 19 4.6 0.0 2.3 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF5366 PF17328.2 gi|313116838|ref|YP_004037962.1| - 0.0049 17.0 0.6 0.0054 16.9 0.6 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5366) DDE_Tnp_IS240 PF13610.6 gi|313116841|ref|YP_004037965.1| - 3.6e-32 111.5 0.0 6.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313116841|ref|YP_004037965.1| - 4.1e-07 29.7 0.3 8.8e-07 28.6 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313116841|ref|YP_004037965.1| - 0.031 14.5 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313116841|ref|YP_004037965.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313116841|ref|YP_004037965.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family EthD PF07110.11 gi|313116842|ref|YP_004037966.1| - 0.059 14.5 0.0 0.1 13.8 0.0 1.3 1 0 0 1 1 1 0 EthD domain DUF533 PF04391.12 gi|313116843|ref|YP_004037967.1| - 0.049 13.2 0.2 6.3 6.3 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF533) BTAD PF03704.17 gi|313116844|ref|YP_004037968.1| - 1.8e-07 31.7 36.9 0.021 15.3 0.3 8.9 4 3 6 10 10 10 4 Bacterial transcriptional activator domain TPR_19 PF14559.6 gi|313116844|ref|YP_004037968.1| - 6e-05 23.5 34.0 0.02 15.4 0.1 10.3 11 3 1 12 12 12 4 Tetratricopeptide repeat Phage_TAC_6 PF09550.10 gi|313116844|ref|YP_004037968.1| - 0.061 13.8 20.6 9.5 6.7 0.1 7.8 8 0 0 8 8 8 0 Phage tail assembly chaperone protein, TAC TPR_17 PF13431.6 gi|313116844|ref|YP_004037968.1| - 0.1 13.0 0.1 69 4.2 0.0 4.3 5 0 0 5 5 5 0 Tetratricopeptide repeat Sulfotransfer_3 PF13469.6 gi|313116844|ref|YP_004037968.1| - 0.13 12.6 2.4 20 5.5 0.0 3.8 2 1 1 3 3 3 0 Sulfotransferase family TPR_6 PF13174.6 gi|313116844|ref|YP_004037968.1| - 0.18 12.5 15.0 17 6.3 0.3 8.3 11 0 0 11 11 11 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|313116844|ref|YP_004037968.1| - 1.7 9.7 52.0 19 6.4 3.5 13.3 8 3 6 14 14 14 0 Tetratricopeptide repeat AAA_16 PF13191.6 gi|313116845|ref|YP_004037969.1| - 3.7e-05 24.2 5.1 1.6 9.1 2.3 5.1 3 1 0 3 3 3 2 AAA ATPase domain AAA_33 PF13671.6 gi|313116845|ref|YP_004037969.1| - 0.011 15.8 1.3 0.96 9.6 0.2 3.8 3 1 0 3 3 3 0 AAA domain RNase_H PF00075.24 gi|313116846|ref|YP_004037970.1| - 1e-08 35.5 0.0 9.4e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 RNase H RVT_3 PF13456.6 gi|313116846|ref|YP_004037970.1| - 1e-05 25.4 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like Peripla_BP_2 PF01497.18 gi|313116849|ref|YP_004037973.1| - 4.8e-14 52.5 0.0 6.6e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Pyr_redox_2 PF07992.14 gi|313116850|ref|YP_004037974.1| - 3.8e-10 39.5 0.3 2.2e-07 30.4 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313116850|ref|YP_004037974.1| - 1.7e-06 27.5 1.6 0.00069 18.9 0.2 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|313116850|ref|YP_004037974.1| - 3.1e-06 26.5 1.4 0.00027 20.1 0.4 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|313116850|ref|YP_004037974.1| - 1.7e-05 24.2 0.5 6.4e-05 22.4 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313116850|ref|YP_004037974.1| - 3.9e-05 23.8 0.3 0.00011 22.4 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|313116850|ref|YP_004037974.1| - 8.8e-05 21.4 0.1 0.0011 17.7 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|313116850|ref|YP_004037974.1| - 0.00047 19.4 0.9 0.00047 19.4 0.9 3.3 2 1 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|313116850|ref|YP_004037974.1| - 0.00051 20.6 3.7 0.0075 16.8 0.1 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313116850|ref|YP_004037974.1| - 0.00067 19.0 0.6 0.0027 17.0 0.1 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|313116850|ref|YP_004037974.1| - 0.0015 17.9 1.7 0.0015 17.9 1.7 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|313116850|ref|YP_004037974.1| - 0.0023 17.1 0.9 0.0023 17.1 0.9 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|313116850|ref|YP_004037974.1| - 0.0045 16.6 3.7 0.0045 16.6 3.7 3.9 2 1 2 4 4 4 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|313116850|ref|YP_004037974.1| - 0.11 12.4 9.4 0.94 9.5 0.1 3.0 3 1 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|313116850|ref|YP_004037974.1| - 1.2 8.9 2.9 1 9.2 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313116850|ref|YP_004037974.1| - 1.4 8.5 3.7 0.41 10.3 0.2 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Hydrolase_6 PF13344.6 gi|313116852|ref|YP_004037976.1| - 3e-20 72.2 0.0 2.2e-19 69.4 0.0 2.3 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.28 gi|313116852|ref|YP_004037976.1| - 1.2e-19 70.6 0.1 2.3e-19 69.7 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.6 gi|313116852|ref|YP_004037976.1| - 1.2e-15 57.3 0.1 3.7e-15 55.7 0.1 1.9 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|313116852|ref|YP_004037976.1| - 8.9e-06 26.1 1.3 6.6e-05 23.3 1.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|313116852|ref|YP_004037976.1| - 3.9e-05 23.8 0.0 0.00014 22.0 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase MFS_1 PF07690.16 gi|313116853|ref|YP_004037977.1| - 7.1e-16 58.1 30.0 7.1e-16 58.1 30.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|313116853|ref|YP_004037977.1| - 6.4e-06 25.3 7.9 0.0026 16.7 0.2 2.3 2 1 0 2 2 2 2 MFS_1 like family UPF0444 PF15475.6 gi|313116853|ref|YP_004037977.1| - 2.4 8.5 5.6 3.6 7.9 0.2 3.0 3 0 0 3 3 3 0 Transmembrane protein C12orf23, UPF0444 HAP PF03866.13 gi|313116853|ref|YP_004037977.1| - 2.5 8.1 10.0 0.095 12.7 2.8 2.2 2 0 0 2 2 2 0 Hydrophobic abundant protein (HAP) PTA_PTB PF01515.19 gi|313116854|ref|YP_004037978.1| - 2.5e-94 316.2 0.0 3.5e-94 315.7 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|313116854|ref|YP_004037978.1| - 3.1e-28 98.8 0.3 6.8e-26 91.2 0.3 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|313116854|ref|YP_004037978.1| - 1.4e-21 76.9 0.2 3.8e-21 75.5 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF2732 PF10809.8 gi|313116854|ref|YP_004037978.1| - 0.03 14.2 0.1 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2732) DUF4118 PF13493.6 gi|313116855|ref|YP_004037979.1| - 0.034 13.9 2.7 0.046 13.5 2.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) HTH_20 PF12840.7 gi|313116857|ref|YP_004037981.1| - 1.1e-11 44.5 0.0 2e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313116857|ref|YP_004037981.1| - 3e-05 23.5 0.0 9.1e-05 21.9 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313116857|ref|YP_004037981.1| - 0.00047 20.0 0.0 0.00081 19.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313116857|ref|YP_004037981.1| - 0.014 15.2 0.0 0.042 13.8 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF2513 PF10711.9 gi|313116857|ref|YP_004037981.1| - 0.037 14.3 0.0 0.058 13.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|313116857|ref|YP_004037981.1| - 0.046 14.2 0.0 0.12 12.9 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain MdcG PF10620.9 gi|313116858|ref|YP_004037982.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Involucrin2 PF06994.11 gi|313116859|ref|YP_004037983.1| - 0.11 12.6 2.8 0.16 12.1 2.8 1.2 1 0 0 1 1 1 0 Involucrin TrmB PF01978.19 gi|313116861|ref|YP_004037985.1| - 0.00017 21.4 0.0 0.00051 19.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313116861|ref|YP_004037985.1| - 0.0012 18.7 0.0 0.0033 17.3 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|313116861|ref|YP_004037985.1| - 0.0016 18.9 0.0 0.0038 17.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|313116861|ref|YP_004037985.1| - 0.01 15.9 0.1 0.033 14.3 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|313116861|ref|YP_004037985.1| - 0.02 14.8 0.0 0.093 12.7 0.0 2.0 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.20 gi|313116861|ref|YP_004037985.1| - 0.025 14.9 0.0 0.052 13.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|313116861|ref|YP_004037985.1| - 0.15 12.0 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.16 gi|313116861|ref|YP_004037985.1| - 0.17 12.0 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HTH_IclR PF09339.10 gi|313116861|ref|YP_004037985.1| - 0.19 11.6 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain PQQ_2 PF13360.6 gi|313116864|ref|YP_004037988.1| - 4.1e-29 101.8 18.6 2.6e-14 53.4 4.4 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|313116864|ref|YP_004037988.1| - 6.6e-13 48.7 34.8 0.033 14.7 0.7 8.3 8 2 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|313116864|ref|YP_004037988.1| - 8.3e-07 28.7 3.7 1.7 8.7 0.2 6.6 7 0 0 7 7 7 2 PQQ enzyme repeat Methyltransf_18 PF12847.7 gi|313116864|ref|YP_004037988.1| - 0.19 11.7 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ribonuc_red_sm PF00268.21 gi|313116866|ref|YP_004037990.1| - 8.6e-06 25.4 0.0 1.9e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain ABC_transp_aux PF09822.9 gi|313116868|ref|YP_004037992.1| - 4.8e-21 75.4 0.1 6.5e-06 25.8 0.0 3.2 3 0 0 3 3 3 3 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|313116868|ref|YP_004037992.1| - 1.1e-11 45.0 5.1 0.0016 18.9 0.0 4.7 4 0 0 4 4 4 3 Domain of unknown function (DUF4350) SNase PF00565.17 gi|313116868|ref|YP_004037992.1| - 3.2e-10 40.4 0.0 1.6e-08 34.9 0.0 2.4 2 0 0 2 2 2 1 Staphylococcal nuclease homologue DUF2194 PF09960.9 gi|313116868|ref|YP_004037992.1| - 2.1e-07 29.7 0.0 0.00033 19.1 0.0 3.0 3 0 0 3 3 3 3 Uncharacterised protein conserved in bacteria (DUF2194) ThuA PF06283.11 gi|313116868|ref|YP_004037992.1| - 1.1e-06 29.0 0.4 0.0011 19.2 0.0 3.2 3 0 0 3 3 3 2 Trehalose utilisation UDPG_MGDP_dh_C PF03720.15 gi|313116868|ref|YP_004037992.1| - 0.00069 20.0 0.0 4.3 7.8 0.0 3.6 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDOST_48kD PF03345.14 gi|313116868|ref|YP_004037992.1| - 0.066 12.0 0.1 2 7.2 0.0 2.7 3 1 0 3 3 3 0 Oligosaccharyltransferase 48 kDa subunit beta Iron_permease PF04120.12 gi|313116870|ref|YP_004037994.1| - 0.23 11.2 2.5 0.36 10.6 2.5 1.3 1 0 0 1 1 1 0 Low affinity iron permease YrhK PF14145.6 gi|313116870|ref|YP_004037994.1| - 0.5 10.3 10.2 0.093 12.6 3.5 2.6 2 1 0 2 2 2 0 YrhK-like protein DUF4199 PF13858.6 gi|313116870|ref|YP_004037994.1| - 6.1 7.2 18.0 17 5.8 18.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) HTH_20 PF12840.7 gi|313116871|ref|YP_004037995.1| - 1.4e-05 25.1 0.0 2.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|313116871|ref|YP_004037995.1| - 0.013 15.4 1.4 2.6 8.1 0.2 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HTH_5 PF01022.20 gi|313116871|ref|YP_004037995.1| - 0.021 14.7 0.0 0.068 13.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family zinc_ribbon_10 PF10058.9 gi|313116871|ref|YP_004037995.1| - 0.044 13.5 0.1 3 7.6 0.0 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein AMP_N PF05195.16 gi|313116871|ref|YP_004037995.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Aminopeptidase P, N-terminal domain zinc_ribbon_9 PF14369.6 gi|313116871|ref|YP_004037995.1| - 0.19 12.0 4.6 2 8.7 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|313116871|ref|YP_004037995.1| - 0.24 11.4 3.2 7.1 6.7 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbons DUF35_N PF12172.8 gi|313116871|ref|YP_004037995.1| - 1.8 8.5 6.2 1.3 9.0 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CPBP PF02517.16 gi|313116872|ref|YP_004037996.1| - 4e-18 65.6 5.7 4e-18 65.6 5.7 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF1129 PF06570.11 gi|313116872|ref|YP_004037996.1| - 0.064 12.7 0.5 0.064 12.7 0.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) DUF202 PF02656.15 gi|313116873|ref|YP_004037997.1| - 1 9.9 3.7 3.1 8.3 3.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) BPD_transp_1 PF00528.22 gi|313116874|ref|YP_004037998.1| - 1.3e-21 77.2 17.6 1.3e-21 77.2 17.6 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313116875|ref|YP_004037999.1| - 1.5e-16 60.7 19.4 1.5e-16 60.7 19.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|313116876|ref|YP_004038000.1| - 3.1e-26 92.8 1.6 4.4e-26 92.3 1.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313116876|ref|YP_004038000.1| - 2.7e-20 73.6 3.3 4.3e-20 72.9 3.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|313116877|ref|YP_004038001.1| - 7.3e-33 114.0 0.0 1.1e-32 113.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|313116877|ref|YP_004038001.1| - 2.7e-10 40.3 0.2 7.7e-10 38.8 0.2 1.8 2 0 0 2 2 1 1 TOBE domain OB_MalK PF17912.1 gi|313116877|ref|YP_004038001.1| - 9.4e-09 36.0 0.0 3.5e-08 34.1 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|313116877|ref|YP_004038001.1| - 2.6e-08 34.1 0.1 0.0047 16.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|313116877|ref|YP_004038001.1| - 3.6e-06 27.2 0.1 7.4e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|313116877|ref|YP_004038001.1| - 0.00025 20.6 0.0 0.00063 19.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|313116877|ref|YP_004038001.1| - 0.00027 21.5 0.0 0.00047 20.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313116877|ref|YP_004038001.1| - 0.0027 17.6 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|313116877|ref|YP_004038001.1| - 0.0029 18.0 0.0 0.0052 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|313116877|ref|YP_004038001.1| - 0.0044 17.0 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain CysA_C_terminal PF17850.1 gi|313116877|ref|YP_004038001.1| - 0.0079 16.7 0.0 0.024 15.2 0.0 1.9 1 0 0 1 1 1 1 CysA C-terminal regulatory domain AAA_15 PF13175.6 gi|313116877|ref|YP_004038001.1| - 0.0091 15.7 0.0 0.018 14.8 0.0 1.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|313116877|ref|YP_004038001.1| - 0.013 15.8 0.2 0.026 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313116877|ref|YP_004038001.1| - 0.015 15.7 0.2 0.087 13.2 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|313116877|ref|YP_004038001.1| - 0.029 14.1 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|313116877|ref|YP_004038001.1| - 0.044 13.3 0.1 0.77 9.3 0.0 2.6 2 1 1 3 3 3 0 AAA domain Mg_chelatase PF01078.21 gi|313116877|ref|YP_004038001.1| - 0.049 13.0 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|313116877|ref|YP_004038001.1| - 0.088 13.0 0.3 0.15 12.2 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313116877|ref|YP_004038001.1| - 0.1 12.3 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.22 gi|313116878|ref|YP_004038002.1| - 1.7e-20 74.0 0.0 2.7e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116878|ref|YP_004038002.1| - 4.1e-08 33.2 0.1 1.2e-07 31.7 0.1 1.8 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|313116878|ref|YP_004038002.1| - 3.8e-06 26.6 0.1 2e-05 24.3 0.0 2.1 1 1 1 2 2 2 1 Putative oxidoreductase C terminal domain CoA_binding PF02629.19 gi|313116878|ref|YP_004038002.1| - 0.064 14.0 0.0 0.14 12.9 0.0 1.5 2 0 0 2 2 2 0 CoA binding domain 53-BP1_Tudor PF09038.10 gi|313116878|ref|YP_004038002.1| - 0.13 12.2 0.0 0.44 10.5 0.0 1.8 2 0 0 2 2 2 0 Tumour suppressor p53-binding protein-1 Tudor F420_oxidored PF03807.17 gi|313116878|ref|YP_004038002.1| - 0.16 12.6 0.3 0.38 11.3 0.1 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.24 gi|313116879|ref|YP_004038003.1| - 1.6e-28 99.6 0.5 2.1e-28 99.2 0.5 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|313116879|ref|YP_004038003.1| - 0.022 14.5 0.4 0.38 10.5 0.1 3.0 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus MFS_1_like PF12832.7 gi|313116880|ref|YP_004038004.1| - 9.3e-39 133.4 17.5 2e-38 132.3 17.5 1.5 1 1 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 gi|313116880|ref|YP_004038004.1| - 5.4e-17 61.8 61.5 2.4e-15 56.3 40.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|313116880|ref|YP_004038004.1| - 1.4e-11 43.8 5.1 1.4e-11 43.8 5.1 1.9 2 0 0 2 2 2 1 LacY proton/sugar symporter Nuc_H_symport PF03825.16 gi|313116880|ref|YP_004038004.1| - 8.7e-07 28.3 22.7 1.2e-06 27.8 22.7 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_2 PF13347.6 gi|313116880|ref|YP_004038004.1| - 0.027 13.1 30.6 0.033 12.7 2.6 2.8 2 1 0 2 2 2 0 MFS/sugar transport protein Ribonuc_L-PSP PF01042.21 gi|313116881|ref|YP_004038005.1| - 2.8e-40 137.1 0.0 3.1e-40 136.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP GATase1_like PF07090.11 gi|313116882|ref|YP_004038006.1| - 1.2e-71 241.1 0.0 1.3e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 Putative glutamine amidotransferase PGM_PMM_II PF02879.16 gi|313116882|ref|YP_004038006.1| - 0.099 13.3 0.0 0.2 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ADH_N PF08240.12 gi|313116883|ref|YP_004038007.1| - 4.3e-31 107.0 0.3 8e-31 106.2 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313116883|ref|YP_004038007.1| - 5.5e-23 81.4 0.3 8.2e-23 80.8 0.3 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|313116883|ref|YP_004038007.1| - 7.8e-13 48.4 0.4 1.3e-12 47.7 0.4 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|313116883|ref|YP_004038007.1| - 0.00071 20.6 0.1 0.0012 19.9 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ApbA PF02558.16 gi|313116883|ref|YP_004038007.1| - 0.019 14.6 0.1 0.033 13.8 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PIG-L PF02585.17 gi|313116884|ref|YP_004038008.1| - 2.9e-31 108.8 0.7 4.7e-31 108.1 0.7 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|313116884|ref|YP_004038008.1| - 0.003 17.6 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Cdc6_C PF09079.11 gi|313116885|ref|YP_004038009.1| - 2.3e-19 69.1 0.3 1.2e-17 63.6 0.1 2.5 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313116885|ref|YP_004038009.1| - 4.1e-13 49.8 0.0 1.6e-12 47.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313116885|ref|YP_004038009.1| - 2.6e-06 27.9 5.9 4.7e-05 23.8 5.9 2.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|313116885|ref|YP_004038009.1| - 0.0011 18.2 0.0 0.0023 17.2 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain TniB PF05621.11 gi|313116885|ref|YP_004038009.1| - 0.0013 18.2 0.0 0.0038 16.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein AAA_5 PF07728.14 gi|313116885|ref|YP_004038009.1| - 0.0014 18.6 0.4 0.024 14.6 0.4 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|313116885|ref|YP_004038009.1| - 0.0015 18.0 0.4 0.51 9.8 0.0 2.4 2 1 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|313116885|ref|YP_004038009.1| - 0.0031 17.6 0.0 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|313116885|ref|YP_004038009.1| - 0.0033 16.6 0.0 0.0077 15.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA PF00004.29 gi|313116885|ref|YP_004038009.1| - 0.0063 16.9 1.3 0.083 13.3 1.3 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313116885|ref|YP_004038009.1| - 0.0096 15.6 0.1 0.025 14.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain TIP49_C PF17856.1 gi|313116885|ref|YP_004038009.1| - 0.011 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_24 PF13479.6 gi|313116885|ref|YP_004038009.1| - 0.012 15.3 0.4 0.033 13.9 0.2 1.9 2 1 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|313116885|ref|YP_004038009.1| - 0.037 13.8 2.2 5.6 6.7 0.2 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_32 PF13654.6 gi|313116885|ref|YP_004038009.1| - 0.083 11.7 0.6 5.1 5.7 0.3 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|313116885|ref|YP_004038009.1| - 0.085 12.8 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|313116885|ref|YP_004038009.1| - 0.14 12.5 0.0 0.44 11.0 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_7 PF12775.7 gi|313116885|ref|YP_004038009.1| - 0.15 11.6 0.1 0.48 9.9 0.1 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region GFO_IDH_MocA PF01408.22 gi|313116886|ref|YP_004038010.1| - 5e-24 85.4 0.2 7.6e-24 84.8 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116886|ref|YP_004038010.1| - 2.7e-11 43.5 0.0 5.7e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|313116886|ref|YP_004038010.1| - 0.00045 20.6 0.1 0.001 19.5 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|313116886|ref|YP_004038010.1| - 0.0037 17.4 0.0 0.0066 16.6 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|313116886|ref|YP_004038010.1| - 0.0087 16.7 0.1 0.016 15.9 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|313116886|ref|YP_004038010.1| - 0.022 15.3 0.0 0.069 13.7 0.0 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|313116887|ref|YP_004038011.1| - 3e-17 63.6 0.5 5.7e-17 62.6 0.2 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116887|ref|YP_004038011.1| - 3.4e-08 33.5 0.1 8.3e-08 32.3 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Oxidoreduct_C PF16490.5 gi|313116887|ref|YP_004038011.1| - 0.013 15.2 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain Sacchrp_dh_NADP PF03435.18 gi|313116887|ref|YP_004038011.1| - 0.029 14.6 0.7 1.8 8.9 0.5 3.0 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|313116888|ref|YP_004038012.1| - 3e-13 50.6 0.0 5.7e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116888|ref|YP_004038012.1| - 9.1e-05 22.4 0.0 0.00017 21.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.22 gi|313116889|ref|YP_004038013.1| - 1.5e-06 29.0 0.0 2.4e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313116889|ref|YP_004038013.1| - 0.00022 21.2 0.0 0.00045 20.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Aminotran_5 PF00266.19 gi|313116890|ref|YP_004038014.1| - 7e-10 38.4 0.0 1.2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|313116890|ref|YP_004038014.1| - 1.3e-09 37.6 0.6 4.8e-08 32.4 0.3 3.2 2 2 0 2 2 2 1 L-seryl-tRNA selenium transferase DegT_DnrJ_EryC1 PF01041.17 gi|313116890|ref|YP_004038014.1| - 1.4e-07 31.2 3.4 9.1e-07 28.5 2.9 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|313116890|ref|YP_004038014.1| - 1.7e-05 23.5 0.1 0.00065 18.3 0.0 2.1 2 0 0 2 2 2 2 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|313116890|ref|YP_004038014.1| - 0.0022 17.3 0.6 0.0042 16.4 0.1 2.0 2 1 0 2 2 2 1 Beta-eliminating lyase NAD_binding_3 PF03447.16 gi|313116890|ref|YP_004038014.1| - 0.034 14.8 0.1 0.18 12.5 0.0 2.1 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|313116891|ref|YP_004038015.1| - 2.2e-23 82.8 0.3 1.7e-21 76.7 0.1 2.1 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|313116891|ref|YP_004038015.1| - 0.0026 16.6 0.0 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) DUF2334 PF10096.9 gi|313116891|ref|YP_004038015.1| - 0.042 13.5 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) NYN PF01936.18 gi|313116891|ref|YP_004038015.1| - 0.048 14.1 0.0 3.5 8.1 0.0 2.6 2 1 0 2 2 2 0 NYN domain GlcNAc_2-epim PF07221.11 gi|313116892|ref|YP_004038016.1| - 2.5e-95 319.7 8.3 3.2e-95 319.3 8.3 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|313116892|ref|YP_004038016.1| - 5.3e-06 26.2 4.5 0.00028 20.5 3.0 2.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|313116892|ref|YP_004038016.1| - 0.0008 19.0 0.2 0.81 9.2 0.0 2.6 2 0 0 2 2 2 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_127 PF07944.12 gi|313116892|ref|YP_004038016.1| - 0.006 15.1 0.6 0.47 8.9 0.1 2.2 1 1 1 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_47 PF01532.20 gi|313116892|ref|YP_004038016.1| - 0.11 11.4 0.0 9.5 5.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 47 DUF35_N PF12172.8 gi|313116893|ref|YP_004038017.1| - 8.7e-07 28.7 3.0 1.6e-06 27.8 3.0 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|313116893|ref|YP_004038017.1| - 4.6e-05 23.3 2.9 0.00012 22.0 1.7 2.4 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated ACP_syn_III_C PF08541.10 gi|313116893|ref|YP_004038017.1| - 0.0014 18.8 0.2 0.004 17.3 0.2 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|313116893|ref|YP_004038017.1| - 0.0027 17.1 0.1 0.0055 16.1 0.1 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_N PF00108.23 gi|313116894|ref|YP_004038018.1| - 3.4e-27 95.4 0.3 1.8e-26 93.1 0.3 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|313116894|ref|YP_004038018.1| - 1.3e-09 37.7 0.2 5e-09 35.9 0.0 2.1 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|313116894|ref|YP_004038018.1| - 9.4e-07 28.7 2.3 1.9e-06 27.7 1.0 2.0 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|313116894|ref|YP_004038018.1| - 0.00019 21.2 0.9 0.059 13.2 0.1 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peripla_BP_2 PF01497.18 gi|313116895|ref|YP_004038019.1| - 5.8e-18 65.3 0.2 8.2e-18 64.8 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313116895|ref|YP_004038019.1| - 0.00031 20.5 3.3 0.00053 19.7 3.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PhoLip_ATPase_N PF16209.5 gi|313116895|ref|YP_004038019.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Phospholipid-translocating ATPase N-terminal Glyco_hydro_3 PF00933.21 gi|313116897|ref|YP_004038021.1| - 1.3e-73 248.1 0.0 1.8e-73 247.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|313116897|ref|YP_004038021.1| - 2e-50 171.6 0.0 3e-50 171.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|313116897|ref|YP_004038021.1| - 4.3e-11 42.7 1.2 6.2e-11 42.3 0.2 1.8 2 0 0 2 2 2 1 Fibronectin type III-like domain DUF11 PF01345.18 gi|313116897|ref|YP_004038021.1| - 3e-06 27.4 1.9 8.3e-06 26.0 1.9 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|313116897|ref|YP_004038021.1| - 0.016 15.5 0.1 0.03 14.6 0.1 1.4 1 0 0 1 1 1 0 CARDB TrkA_C PF02080.21 gi|313116898|ref|YP_004038022.1| - 1.2e-11 44.2 0.3 2.2e-11 43.4 0.3 1.4 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|313116898|ref|YP_004038022.1| - 8.8e-09 34.8 0.0 1.9e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313116898|ref|YP_004038022.1| - 1.1e-08 34.8 0.1 2.7e-08 33.5 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313116898|ref|YP_004038022.1| - 0.00017 21.4 0.0 0.0004 20.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|313116898|ref|YP_004038022.1| - 0.005 16.7 0.1 0.021 14.7 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|313116898|ref|YP_004038022.1| - 0.0055 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|313116898|ref|YP_004038022.1| - 0.011 15.8 0.0 0.031 14.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|313116898|ref|YP_004038022.1| - 0.033 13.8 0.0 0.091 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.6 gi|313116898|ref|YP_004038022.1| - 0.041 14.0 0.0 0.092 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|313116898|ref|YP_004038022.1| - 0.071 12.8 0.0 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|313116898|ref|YP_004038022.1| - 0.15 12.0 0.1 0.49 10.4 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_Tc3_2 PF01498.18 gi|313116898|ref|YP_004038022.1| - 0.17 12.1 0.0 0.4 11.0 0.0 1.6 1 0 0 1 1 1 0 Transposase TrkA_N PF02254.18 gi|313116899|ref|YP_004038023.1| - 8.4e-26 90.5 1.1 1.5e-25 89.7 1.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|313116899|ref|YP_004038023.1| - 2.1e-12 46.7 0.7 8.6e-12 44.7 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain ADH_zinc_N PF00107.26 gi|313116899|ref|YP_004038023.1| - 8e-05 22.6 0.1 0.0018 18.3 0.3 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase XdhC_C PF13478.6 gi|313116899|ref|YP_004038023.1| - 0.00044 20.7 0.1 0.00065 20.2 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Sacchrp_dh_NADP PF03435.18 gi|313116899|ref|YP_004038023.1| - 0.0021 18.3 0.1 0.0031 17.8 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|313116899|ref|YP_004038023.1| - 0.0024 17.5 0.7 0.0036 16.9 0.6 1.4 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|313116899|ref|YP_004038023.1| - 0.0035 17.3 2.0 0.012 15.5 0.8 2.1 2 1 0 2 2 2 1 NAD(P)H-binding Peripla_BP_3 PF13377.6 gi|313116899|ref|YP_004038023.1| - 0.0052 17.1 1.3 0.013 15.8 0.1 2.0 2 0 0 2 2 2 1 Periplasmic binding protein-like domain 3HCDH_N PF02737.18 gi|313116899|ref|YP_004038023.1| - 0.0054 16.6 0.3 0.0083 16.0 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|313116899|ref|YP_004038023.1| - 0.0063 16.9 0.3 0.014 15.9 0.3 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|313116899|ref|YP_004038023.1| - 0.0096 16.5 1.0 0.033 14.8 0.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|313116899|ref|YP_004038023.1| - 0.012 14.9 0.8 0.018 14.3 0.8 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|313116899|ref|YP_004038023.1| - 0.02 14.3 0.2 0.031 13.7 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|313116899|ref|YP_004038023.1| - 0.029 14.6 0.1 0.071 13.3 0.1 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PglD_N PF17836.1 gi|313116899|ref|YP_004038023.1| - 0.029 15.0 0.1 0.051 14.2 0.1 1.5 1 0 0 1 1 1 0 PglD N-terminal domain ATPgrasp_N PF18130.1 gi|313116899|ref|YP_004038023.1| - 0.053 14.1 1.4 0.096 13.2 1.4 1.5 1 0 0 1 1 1 0 ATP-grasp N-terminal domain NmrA PF05368.13 gi|313116899|ref|YP_004038023.1| - 0.13 11.8 0.2 0.2 11.2 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family HGTP_anticodon2 PF12745.7 gi|313116900|ref|YP_004038024.1| - 0.15 11.6 1.7 0.18 11.3 1.7 1.1 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs CitMHS PF03600.16 gi|313116901|ref|YP_004038025.1| - 8.5e-65 218.9 1.3 1e-64 218.6 0.1 1.6 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|313116901|ref|YP_004038025.1| - 3.6e-21 75.8 37.7 3.2e-14 52.9 17.8 3.2 3 0 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|313116901|ref|YP_004038025.1| - 6.1e-19 67.6 2.5 1e-11 44.5 0.3 2.5 2 0 0 2 2 2 2 TrkA-C domain DUF883 PF05957.13 gi|313116903|ref|YP_004038027.1| - 0.1 13.2 1.5 0.59 10.8 0.0 2.2 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) CBS PF00571.28 gi|313116905|ref|YP_004038029.1| - 1.3e-24 86.4 0.7 4.7e-14 52.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|313116905|ref|YP_004038029.1| - 4.7e-13 49.0 9.3 9.1e-09 35.0 0.2 3.3 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|313116905|ref|YP_004038029.1| - 5.4e-06 26.2 2.7 5.4e-06 26.2 2.7 2.3 2 1 0 3 3 3 1 Peptidase M50B-like SpoVT_C PF15714.5 gi|313116905|ref|YP_004038029.1| - 0.035 14.1 0.1 0.074 13.1 0.1 1.5 1 1 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor Peptidase_M64 PF09471.10 gi|313116905|ref|YP_004038029.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 IgA Peptidase M64 CBS PF00571.28 gi|313116908|ref|YP_004038032.1| - 9.8e-10 38.7 0.9 2.5e-09 37.5 0.9 1.7 1 0 0 1 1 1 1 CBS domain 17kDa_Anti_2 PF16998.5 gi|313116908|ref|YP_004038032.1| - 0.098 12.6 1.0 2.4 8.1 0.1 2.4 1 1 1 2 2 2 0 17 kDa outer membrane surface antigen DUF4267 PF14087.6 gi|313116909|ref|YP_004038033.1| - 8.4 6.5 9.0 1.2 9.2 0.6 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4267) DUF2178 PF09946.9 gi|313116910|ref|YP_004038034.1| - 2e-07 31.1 0.3 3.2e-07 30.5 0.3 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) HTH_3 PF01381.22 gi|313116911|ref|YP_004038035.1| - 1e-15 57.5 0.0 1.1e-15 57.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|313116911|ref|YP_004038035.1| - 1.7e-09 37.9 0.2 1.8e-09 37.8 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|313116911|ref|YP_004038035.1| - 4e-09 36.4 0.0 4e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|313116911|ref|YP_004038035.1| - 4.4e-06 27.0 0.0 4.6e-06 27.0 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|313116911|ref|YP_004038035.1| - 0.0009 19.1 0.3 0.0012 18.6 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313116911|ref|YP_004038035.1| - 0.026 14.5 0.1 0.035 14.1 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|313116911|ref|YP_004038035.1| - 0.031 14.1 0.1 0.047 13.6 0.1 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|313116911|ref|YP_004038035.1| - 0.065 12.8 0.1 0.089 12.3 0.1 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|313116911|ref|YP_004038035.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|313116911|ref|YP_004038035.1| - 0.07 13.1 0.0 0.07 13.1 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|313116911|ref|YP_004038035.1| - 0.12 12.5 0.0 0.35 11.0 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Phage_CI_repr PF07022.13 gi|313116911|ref|YP_004038035.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_20 PF12840.7 gi|313116912|ref|YP_004038036.1| - 3.3e-05 23.8 0.0 6.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Secretin_N_2 PF07655.13 gi|313116912|ref|YP_004038036.1| - 2 9.0 5.8 2.4 8.8 0.8 2.2 2 0 0 2 2 2 0 Secretin N-terminal domain MarR_2 PF12802.7 gi|313116915|ref|YP_004038039.1| - 1.4e-15 56.9 1.7 5.1e-09 35.9 0.9 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|313116915|ref|YP_004038039.1| - 1.3e-09 37.8 0.2 0.00047 20.0 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|313116915|ref|YP_004038039.1| - 5.8e-09 35.4 0.1 0.0032 17.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|313116915|ref|YP_004038039.1| - 1.7e-08 34.2 0.0 0.00098 19.0 0.1 2.5 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.20 gi|313116915|ref|YP_004038039.1| - 2e-08 34.5 0.0 0.0072 16.6 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.6 gi|313116915|ref|YP_004038039.1| - 2.7e-07 31.0 0.9 2.4e-06 28.0 0.4 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|313116915|ref|YP_004038039.1| - 4e-07 29.7 0.2 0.018 14.9 0.1 2.8 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313116915|ref|YP_004038039.1| - 4.2e-07 29.9 0.5 0.031 14.3 0.3 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|313116915|ref|YP_004038039.1| - 7.7e-07 28.7 0.1 0.014 15.2 0.0 2.8 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|313116915|ref|YP_004038039.1| - 1.2e-06 28.4 0.0 0.0012 18.8 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|313116915|ref|YP_004038039.1| - 7.6e-06 25.9 0.3 0.15 12.1 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn helix HTH_28 PF13518.6 gi|313116915|ref|YP_004038039.1| - 7.7e-05 22.7 0.1 0.082 13.1 0.0 2.9 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313116915|ref|YP_004038039.1| - 0.00012 21.8 0.0 0.31 10.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313116915|ref|YP_004038039.1| - 0.00036 20.1 0.1 1.1 9.0 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family DUF746 PF05344.11 gi|313116915|ref|YP_004038039.1| - 0.0013 18.5 0.0 0.0037 17.1 0.0 1.8 2 0 0 2 2 1 1 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|313116915|ref|YP_004038039.1| - 0.0026 18.1 0.0 2.4 8.5 0.0 2.4 1 1 0 2 2 2 2 Penicillinase repressor Crp PF00325.20 gi|313116915|ref|YP_004038039.1| - 0.0048 16.5 0.7 0.026 14.2 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_38 PF13936.6 gi|313116915|ref|YP_004038039.1| - 0.037 13.8 1.4 2.9 7.7 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|313116915|ref|YP_004038039.1| - 0.038 14.5 0.1 0.097 13.2 0.0 1.7 1 1 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_11 PF08279.12 gi|313116915|ref|YP_004038039.1| - 0.077 13.0 0.1 5.3 7.1 0.0 2.5 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.16 gi|313116915|ref|YP_004038039.1| - 0.1 12.2 0.1 2.2 7.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 RPA_C PF08784.11 gi|313116915|ref|YP_004038039.1| - 0.11 13.2 0.0 0.24 12.1 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_41 PF14502.6 gi|313116915|ref|YP_004038039.1| - 0.14 11.8 0.0 0.45 10.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|313116916|ref|YP_004038040.1| - 0.0097 15.9 0.2 0.025 14.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2204 PF09970.9 gi|313116916|ref|YP_004038040.1| - 0.029 14.0 0.2 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) IF2_N PF04760.15 gi|313116916|ref|YP_004038040.1| - 0.046 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_AsnC-type PF13404.6 gi|313116916|ref|YP_004038040.1| - 0.054 13.3 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r3 PF04539.16 gi|313116916|ref|YP_004038040.1| - 0.056 13.5 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 DUF4423 PF14394.6 gi|313116916|ref|YP_004038040.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DDRGK PF09756.9 gi|313116916|ref|YP_004038040.1| - 0.16 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_Tnp_ISL3 PF13542.6 gi|313116916|ref|YP_004038040.1| - 0.19 11.2 0.0 0.35 10.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DprA_WH PF17782.1 gi|313116916|ref|YP_004038040.1| - 0.79 9.9 4.8 0.16 12.1 0.5 2.1 2 0 0 2 2 2 0 DprA winged helix domain SWIM PF04434.17 gi|313116917|ref|YP_004038041.1| - 0.012 15.3 0.7 0.032 13.9 0.7 1.8 1 1 0 1 1 1 0 SWIM zinc finger DUF1326 PF07040.11 gi|313116918|ref|YP_004038042.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1326) ABC2_membrane_2 PF12679.7 gi|313116919|ref|YP_004038043.1| - 3.7e-10 39.6 14.9 1.5e-09 37.6 14.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|313116919|ref|YP_004038043.1| - 3.2 5.9 11.1 3.6 5.8 11.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|313116920|ref|YP_004038044.1| - 4.9e-26 91.9 0.0 1.4e-25 90.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|313116920|ref|YP_004038044.1| - 1.4e-15 58.0 0.0 2.3e-09 37.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313116920|ref|YP_004038044.1| - 8.2e-06 25.4 0.0 0.1 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|313116920|ref|YP_004038044.1| - 3.6e-05 24.4 0.0 6.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|313116920|ref|YP_004038044.1| - 3.6e-05 23.6 1.8 0.00011 21.9 0.7 2.2 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|313116920|ref|YP_004038044.1| - 6.1e-05 22.7 0.1 0.00011 21.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313116920|ref|YP_004038044.1| - 0.0035 17.9 0.0 0.0053 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|313116920|ref|YP_004038044.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|313116920|ref|YP_004038044.1| - 0.019 15.0 0.2 1.1 9.3 0.0 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313116920|ref|YP_004038044.1| - 0.069 13.1 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|313116920|ref|YP_004038044.1| - 0.16 12.2 0.6 2.9 8.1 0.3 2.5 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|313116920|ref|YP_004038044.1| - 0.2 11.4 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane_2 PF12679.7 gi|313116921|ref|YP_004038045.1| - 8.9e-17 61.3 14.7 2.9e-16 59.6 14.7 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313116921|ref|YP_004038045.1| - 7.8e-07 29.2 0.6 1.5e-06 28.3 0.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313116921|ref|YP_004038045.1| - 0.00014 21.1 1.0 0.00018 20.7 1.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313116921|ref|YP_004038045.1| - 0.0069 16.0 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|313116921|ref|YP_004038045.1| - 0.35 10.2 8.7 0.58 9.5 8.7 1.5 1 1 0 1 1 1 0 ABC-2 type transporter TrmB PF01978.19 gi|313116923|ref|YP_004038047.1| - 1.4e-09 37.7 0.3 3.7e-09 36.4 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|313116923|ref|YP_004038047.1| - 6.9e-05 22.8 0.1 0.00021 21.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313116923|ref|YP_004038047.1| - 0.00016 21.2 0.0 0.0015 18.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313116923|ref|YP_004038047.1| - 0.0011 18.8 0.3 0.0039 17.1 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|313116923|ref|YP_004038047.1| - 0.0019 18.0 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|313116923|ref|YP_004038047.1| - 0.0083 15.9 0.2 0.052 13.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|313116923|ref|YP_004038047.1| - 0.019 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain F-112 PF09645.10 gi|313116923|ref|YP_004038047.1| - 0.052 13.7 0.0 11 6.1 0.0 2.2 2 0 0 2 2 2 0 F-112 protein Penicillinase_R PF03965.16 gi|313116923|ref|YP_004038047.1| - 0.052 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 gi|313116923|ref|YP_004038047.1| - 0.061 13.8 0.2 0.2 12.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.19 gi|313116925|ref|YP_004038049.1| - 0.0038 17.4 0.1 0.0051 17.0 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Replic_Relax PF13814.6 gi|313116925|ref|YP_004038049.1| - 0.0059 16.7 0.0 0.0082 16.2 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_WhiA PF02650.14 gi|313116925|ref|YP_004038049.1| - 0.017 15.4 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_Tnp_Tc3_2 PF01498.18 gi|313116925|ref|YP_004038049.1| - 0.018 15.3 0.1 0.033 14.4 0.1 1.4 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.12 gi|313116925|ref|YP_004038049.1| - 0.024 14.6 0.1 0.046 13.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_32 PF13565.6 gi|313116925|ref|YP_004038049.1| - 0.034 14.8 0.3 0.09 13.4 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain TatD_DNase PF01026.21 gi|313116925|ref|YP_004038049.1| - 0.15 11.4 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase DUF4870 PF09685.10 gi|313116926|ref|YP_004038050.1| - 1.3e-07 31.7 3.9 1.3e-07 31.7 3.9 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4870) TetR_C_29 PF17938.1 gi|313116926|ref|YP_004038050.1| - 0.065 13.3 0.1 16 5.6 0.0 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF4293 PF14126.6 gi|313116926|ref|YP_004038050.1| - 0.66 10.2 4.9 4.5 7.5 4.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) E1-E2_ATPase PF00122.20 gi|313116928|ref|YP_004038052.1| - 3.2e-49 166.9 1.1 6.9e-49 165.8 1.1 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|313116928|ref|YP_004038052.1| - 1.1e-48 166.3 5.1 2.8e-48 165.0 5.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|313116928|ref|YP_004038052.1| - 4.1e-29 100.8 1.1 1.4e-13 51.1 0.0 3.3 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|313116928|ref|YP_004038052.1| - 7.7e-07 29.1 2.4 0.0016 18.2 0.6 3.0 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|313116928|ref|YP_004038052.1| - 0.0007 19.7 0.6 0.012 15.8 0.0 3.2 4 1 1 5 5 5 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313116928|ref|YP_004038052.1| - 0.0011 19.4 0.5 0.0033 17.8 0.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Thioredoxin_3 PF13192.6 gi|313116928|ref|YP_004038052.1| - 0.095 12.8 0.4 30 4.8 0.0 3.2 3 0 0 3 3 3 0 Thioredoxin domain Yippee-Mis18 PF03226.14 gi|313116928|ref|YP_004038052.1| - 0.13 12.5 0.1 0.33 11.2 0.1 1.6 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Fer2_BFD PF04324.15 gi|313116928|ref|YP_004038052.1| - 0.26 11.7 1.9 2 8.8 0.1 2.9 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain 4_1_CTD PF05902.13 gi|313116928|ref|YP_004038052.1| - 0.69 10.0 3.1 0.49 10.5 0.6 1.9 2 0 0 2 2 2 0 4.1 protein C-terminal domain (CTD) Amidohydro_1 PF01979.20 gi|313116929|ref|YP_004038053.1| - 1.3e-17 64.2 0.1 1.2e-15 57.7 0.1 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313116929|ref|YP_004038053.1| - 6.8e-17 62.1 8.7 4e-12 46.4 0.1 3.0 2 1 0 2 2 2 2 Amidohydrolase family MucB_RseB PF03888.14 gi|313116930|ref|YP_004038054.1| - 5.7e-05 22.7 0.1 0.00011 21.9 0.1 1.4 1 1 0 1 1 1 1 MucB/RseB N-terminal domain LolA_like PF17131.4 gi|313116930|ref|YP_004038054.1| - 0.00022 21.1 0.6 0.00041 20.1 0.0 1.7 2 0 0 2 2 2 1 Outer membrane lipoprotein-sorting protein Peptidase_S49 PF01343.18 gi|313116931|ref|YP_004038055.1| - 4.6e-21 75.4 1.0 4.3e-12 46.2 1.0 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|313116931|ref|YP_004038055.1| - 1.6e-08 34.6 0.2 5.6e-08 32.9 0.2 2.0 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|313116931|ref|YP_004038055.1| - 2.5e-05 23.4 0.1 3.6e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|313116931|ref|YP_004038055.1| - 0.00024 20.5 0.4 0.12 11.7 0.4 2.3 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Ligase_CoA PF00549.19 gi|313116931|ref|YP_004038055.1| - 0.0041 16.9 0.1 0.014 15.2 0.1 1.9 2 0 0 2 2 2 1 CoA-ligase OKR_DC_1_N PF03709.15 gi|313116931|ref|YP_004038055.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ABC_transp_aux PF09822.9 gi|313116932|ref|YP_004038056.1| - 5.6e-05 22.7 0.0 7.4e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|313116932|ref|YP_004038056.1| - 0.0011 19.3 0.2 0.011 16.1 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) HisKA_7TM PF16927.5 gi|313116933|ref|YP_004038057.1| - 1.4e-53 182.2 15.5 1.7e-53 181.9 15.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|313116933|ref|YP_004038057.1| - 2e-15 57.3 0.0 3.8e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313116933|ref|YP_004038057.1| - 6.7e-09 36.0 0.6 5.2e-08 33.1 0.1 2.6 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|313116933|ref|YP_004038057.1| - 4.6e-08 33.2 0.5 4.6e-07 30.1 0.1 2.7 2 2 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|313116933|ref|YP_004038057.1| - 1.6e-06 28.1 0.0 3.2e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|313116933|ref|YP_004038057.1| - 1.3e-05 25.1 0.4 7.9e-05 22.6 0.1 2.4 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|313116933|ref|YP_004038057.1| - 0.00018 21.5 0.1 0.0012 18.8 0.1 2.4 2 1 0 2 2 2 1 PAS fold PAS_7 PF12860.7 gi|313116933|ref|YP_004038057.1| - 0.0024 18.0 0.9 0.75 10.0 0.0 3.1 4 0 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.6 gi|313116933|ref|YP_004038057.1| - 0.009 15.9 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 1 GHKL domain UbiA PF01040.18 gi|313116934|ref|YP_004038058.1| - 1.9e-16 60.1 22.8 1.9e-16 60.1 22.8 1.9 1 1 1 2 2 2 2 UbiA prenyltransferase family HTH_10 PF04967.12 gi|313116935|ref|YP_004038059.1| - 1.7e-18 66.1 0.1 2.8e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.12 gi|313116935|ref|YP_004038059.1| - 0.00027 20.8 0.1 0.0059 16.5 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|313116935|ref|YP_004038059.1| - 0.0013 18.2 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|313116935|ref|YP_004038059.1| - 0.0066 15.9 0.1 0.013 15.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313116935|ref|YP_004038059.1| - 0.008 16.0 0.1 0.02 14.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|313116935|ref|YP_004038059.1| - 0.026 14.1 0.1 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|313116935|ref|YP_004038059.1| - 0.061 13.0 0.3 0.17 11.5 0.0 1.9 3 0 0 3 3 3 0 Sigma-70, region 4 MarR PF01047.22 gi|313116935|ref|YP_004038059.1| - 0.063 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|313116935|ref|YP_004038059.1| - 0.065 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|313116935|ref|YP_004038059.1| - 0.1 12.4 0.1 0.48 10.2 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|313116935|ref|YP_004038059.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|313116935|ref|YP_004038059.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease p450 PF00067.22 gi|313116936|ref|YP_004038060.1| - 5.3e-96 322.2 0.0 5.9e-96 322.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Hol_Tox PF16935.5 gi|313116937|ref|YP_004038061.1| - 0.21 11.7 1.6 1.4 9.0 0.9 2.1 2 0 0 2 2 2 0 Putative Holin-like Toxin (Hol-Tox) Peptidase_S8 PF00082.22 gi|313116938|ref|YP_004038062.1| - 3.5e-49 167.7 9.1 3.5e-49 167.7 9.1 1.5 2 0 0 2 2 2 1 Subtilase family Pur_ac_phosph_N PF16656.5 gi|313116938|ref|YP_004038062.1| - 0.017 15.7 0.3 0.22 12.1 0.0 2.5 2 0 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain PadR PF03551.14 gi|313116939|ref|YP_004038063.1| - 6.9e-15 54.8 0.8 8.2e-15 54.5 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|313116939|ref|YP_004038063.1| - 0.00013 22.4 0.0 0.00016 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|313116939|ref|YP_004038063.1| - 0.00025 21.1 0.0 0.00034 20.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|313116939|ref|YP_004038063.1| - 0.029 14.2 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|313116939|ref|YP_004038063.1| - 0.032 14.0 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) USP7_ICP0_bdg PF12436.8 gi|313116940|ref|YP_004038064.1| - 0.13 11.5 0.0 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 HxlR PF01638.17 gi|313116942|ref|YP_004038066.1| - 2.5e-27 94.6 0.0 3.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|313116942|ref|YP_004038066.1| - 0.0016 18.3 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family BAT PF15915.5 gi|313116944|ref|YP_004038068.1| - 2.5e-44 150.9 4.8 2.5e-44 150.9 4.8 2.5 3 0 0 3 3 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|313116944|ref|YP_004038068.1| - 8.3e-39 132.0 0.0 4.5e-15 55.8 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|313116944|ref|YP_004038068.1| - 3.1e-33 114.1 0.0 1.1e-09 38.3 0.0 4.0 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|313116944|ref|YP_004038068.1| - 1.2e-23 82.6 0.0 1.2e-07 31.5 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|313116944|ref|YP_004038068.1| - 8.2e-23 81.2 1.4 2.2e-10 41.0 0.0 2.9 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|313116944|ref|YP_004038068.1| - 7e-22 77.0 0.0 2e-21 75.5 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|313116944|ref|YP_004038068.1| - 1e-20 74.0 1.1 2.7e-06 27.6 0.0 4.3 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|313116944|ref|YP_004038068.1| - 1.4e-18 66.9 0.0 1e-05 25.7 0.0 4.8 3 1 1 4 4 4 3 PAS fold GAF_3 PF13492.6 gi|313116944|ref|YP_004038068.1| - 1.8e-15 57.4 0.3 1.2e-06 28.9 0.1 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|313116944|ref|YP_004038068.1| - 5.4e-08 33.5 0.1 0.023 15.4 0.0 2.8 2 1 0 2 2 2 2 GAF domain Sigma70_r4_2 PF08281.12 gi|313116944|ref|YP_004038068.1| - 0.0033 17.1 0.0 0.0098 15.5 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_11 PF14598.6 gi|313116944|ref|YP_004038068.1| - 0.0068 16.5 0.0 3.1 8.0 0.0 3.4 3 0 0 3 3 3 1 PAS domain Sigma70_r4 PF04545.16 gi|313116944|ref|YP_004038068.1| - 0.043 13.3 0.0 0.12 11.9 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|313116944|ref|YP_004038068.1| - 0.06 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF134 PF02001.16 gi|313116944|ref|YP_004038068.1| - 0.06 13.9 0.0 0.2 12.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 PAS_2 PF08446.11 gi|313116944|ref|YP_004038068.1| - 0.063 14.0 0.0 0.44 11.2 0.0 2.6 2 0 0 2 2 1 0 PAS fold PAS_12 PF18095.1 gi|313116944|ref|YP_004038068.1| - 0.066 12.9 0.0 12 5.5 0.0 3.1 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain HTH_24 PF13412.6 gi|313116944|ref|YP_004038068.1| - 0.084 12.5 0.0 0.22 11.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LUC7 PF03194.15 gi|313116944|ref|YP_004038068.1| - 0.11 12.1 1.4 0.3 10.7 1.4 1.6 1 0 0 1 1 1 0 LUC7 N_terminus ATP-cone PF03477.16 gi|313116944|ref|YP_004038068.1| - 0.13 12.8 0.6 9 6.9 0.0 3.0 2 0 0 2 2 2 0 ATP cone domain DUF5315 PF17242.2 gi|313116944|ref|YP_004038068.1| - 0.27 11.1 2.0 18 5.3 0.8 2.8 2 0 0 2 2 2 0 Disordered region of unknown function (DUF5315) CBS PF00571.28 gi|313116945|ref|YP_004038069.1| - 4.5e-21 75.1 0.4 3.7e-09 36.9 0.0 2.6 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|313116945|ref|YP_004038069.1| - 1.2e-19 70.1 0.0 2.3e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313116945|ref|YP_004038069.1| - 1e-07 32.1 0.0 2.6e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|313116945|ref|YP_004038069.1| - 0.12 12.7 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 Thioesterase superfamily Copper-bind PF00127.20 gi|313116947|ref|YP_004038071.1| - 1.9e-08 34.6 0.1 2.6e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313116947|ref|YP_004038071.1| - 2.7e-07 30.6 0.0 1.2e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.15 gi|313116947|ref|YP_004038071.1| - 2.5e-05 24.3 0.2 4.2e-05 23.5 0.2 1.4 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|313116947|ref|YP_004038071.1| - 0.00054 19.7 0.2 0.0021 17.8 0.2 2.0 1 1 0 1 1 1 1 Multicopper oxidase SoxE PF06525.11 gi|313116947|ref|YP_004038071.1| - 0.0043 16.6 0.0 0.014 14.9 0.0 1.9 1 1 0 1 1 1 1 Sulfocyanin (SoxE) domain TAT_signal PF10518.9 gi|313116947|ref|YP_004038071.1| - 0.046 13.6 0.4 0.093 12.6 0.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3553 PF12073.8 gi|313116947|ref|YP_004038071.1| - 0.1 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) TALPID3 PF15324.6 gi|313116947|ref|YP_004038071.1| - 1.8 6.1 9.2 2.4 5.7 9.2 1.1 1 0 0 1 1 1 0 Hedgehog signalling target DUF3558 PF12079.8 gi|313116947|ref|YP_004038071.1| - 5.7 6.9 16.8 1 9.3 12.3 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3558) FecR PF04773.13 gi|313116948|ref|YP_004038072.1| - 0.012 16.2 1.7 2 9.1 0.0 4.3 3 1 1 4 4 4 0 FecR protein DUF3868 PF12984.7 gi|313116948|ref|YP_004038072.1| - 0.054 13.3 5.1 28 4.6 0.0 5.3 5 1 1 6 6 6 0 Domain of unknown function, B. Theta Gene description (DUF3868) FecR PF04773.13 gi|313116949|ref|YP_004038073.1| - 0.00073 20.1 0.2 75 4.1 0.0 5.6 2 2 1 6 6 6 1 FecR protein DUF3868 PF12984.7 gi|313116949|ref|YP_004038073.1| - 0.11 12.2 6.5 34 4.3 0.0 5.6 5 2 2 7 7 7 0 Domain of unknown function, B. Theta Gene description (DUF3868) zf-Di19 PF05605.12 gi|313116950|ref|YP_004038074.1| - 0.047 14.0 0.7 0.095 13.0 0.6 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-C2H2_12 PF18112.1 gi|313116950|ref|YP_004038074.1| - 0.14 12.6 0.8 0.31 11.5 0.1 1.9 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-H2C2_2 PF13465.6 gi|313116950|ref|YP_004038074.1| - 1.4 9.5 3.7 41 4.8 0.7 2.6 3 0 0 3 3 3 0 Zinc-finger double domain TrmB PF01978.19 gi|313116951|ref|YP_004038075.1| - 8.9e-06 25.5 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313116951|ref|YP_004038075.1| - 0.00015 21.5 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|313116951|ref|YP_004038075.1| - 0.00028 20.8 0.1 0.00058 19.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|313116951|ref|YP_004038075.1| - 0.00083 19.1 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313116951|ref|YP_004038075.1| - 0.0016 18.0 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|313116951|ref|YP_004038075.1| - 0.0023 17.8 0.0 0.0069 16.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|313116951|ref|YP_004038075.1| - 0.0026 17.5 0.1 0.007 16.1 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|313116951|ref|YP_004038075.1| - 0.0026 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|313116951|ref|YP_004038075.1| - 0.0048 16.9 0.0 0.014 15.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|313116951|ref|YP_004038075.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|313116951|ref|YP_004038075.1| - 0.018 15.1 0.2 0.046 13.9 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313116951|ref|YP_004038075.1| - 0.022 14.7 0.1 0.05 13.6 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|313116951|ref|YP_004038075.1| - 0.054 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|313116951|ref|YP_004038075.1| - 0.073 13.3 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|313116951|ref|YP_004038075.1| - 0.077 12.9 0.1 0.34 10.8 0.1 2.1 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|313116951|ref|YP_004038075.1| - 0.078 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Trp_repressor PF01371.19 gi|313116951|ref|YP_004038075.1| - 0.082 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein DUF1724 PF08350.10 gi|313116951|ref|YP_004038075.1| - 0.092 12.9 1.3 0.16 12.1 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1724) GM_CSF PF01109.17 gi|313116952|ref|YP_004038076.1| - 0.073 13.2 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor DUF3540 PF12059.8 gi|313116953|ref|YP_004038077.1| - 0.0034 17.2 0.1 0.65 9.8 0.0 2.8 2 1 2 4 4 4 1 Protein of unknown function (DUF3540) DUF2345 PF10106.9 gi|313116953|ref|YP_004038077.1| - 0.0095 15.8 0.0 8 6.3 0.0 3.2 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2345) FecR PF04773.13 gi|313116953|ref|YP_004038077.1| - 0.017 15.7 0.1 12 6.5 0.0 3.5 1 1 2 3 3 3 0 FecR protein Cadherin-like PF12733.7 gi|313116953|ref|YP_004038077.1| - 1.5 9.4 13.0 27 5.4 2.1 3.7 1 1 2 3 3 3 0 Cadherin-like beta sandwich domain FecR PF04773.13 gi|313116956|ref|YP_004038080.1| - 0.021 15.4 1.1 41 4.9 0.0 4.5 4 2 1 5 5 5 0 FecR protein HtaA PF04213.13 gi|313116956|ref|YP_004038080.1| - 0.56 10.7 19.6 0.4 11.1 1.8 4.1 3 1 1 4 4 4 0 Htaa HxlR PF01638.17 gi|313116957|ref|YP_004038081.1| - 2.1e-20 72.3 0.0 3.3e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HxlR PF01638.17 gi|313116959|ref|YP_004038083.1| - 2.2e-25 88.3 0.0 2.8e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|313116959|ref|YP_004038083.1| - 0.074 12.9 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|313116959|ref|YP_004038083.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DDE_Tnp_IS240 PF13610.6 gi|313116960|ref|YP_004038084.1| - 6.3e-32 110.7 0.0 1.1e-31 109.9 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313116960|ref|YP_004038084.1| - 1.1e-06 28.3 0.3 2.3e-06 27.3 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313116960|ref|YP_004038084.1| - 0.03 14.5 0.1 0.059 13.6 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313116960|ref|YP_004038084.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313116960|ref|YP_004038084.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family Citrate_synt PF00285.21 gi|313116961|ref|YP_004038085.1| - 3.6e-105 352.0 0.0 4.1e-105 351.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TetR_C_27 PF17935.1 gi|313116961|ref|YP_004038085.1| - 0.11 12.6 0.2 14 5.8 0.0 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Cu-oxidase_3 PF07732.15 gi|313116962|ref|YP_004038086.1| - 3.9e-10 39.8 0.1 7.6e-10 38.8 0.1 1.5 1 0 0 1 1 1 1 Multicopper oxidase Copper-bind PF00127.20 gi|313116962|ref|YP_004038086.1| - 2.4e-06 27.9 0.4 2.1e-05 24.9 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.14 gi|313116962|ref|YP_004038086.1| - 3.2e-06 26.9 1.2 0.00011 22.0 0.4 2.8 2 1 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|313116962|ref|YP_004038086.1| - 0.0054 16.8 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.20 gi|313116963|ref|YP_004038087.1| - 1.5e-58 198.7 52.9 1.5e-58 198.7 52.9 1.6 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|313116963|ref|YP_004038087.1| - 8.2e-05 22.9 1.4 8.2e-05 22.9 1.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) CPP1-like PF11833.8 gi|313116964|ref|YP_004038088.1| - 0.00028 20.6 1.2 0.00034 20.3 1.2 1.1 1 0 0 1 1 1 1 Protein CHAPERONE-LIKE PROTEIN OF POR1-like YtpI PF14007.6 gi|313116964|ref|YP_004038088.1| - 0.034 14.3 1.0 0.12 12.5 0.5 1.9 1 1 1 2 2 2 0 YtpI-like protein DUF4345 PF14248.6 gi|313116964|ref|YP_004038088.1| - 0.043 13.7 3.0 0.051 13.5 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) DUF2534 PF10749.9 gi|313116964|ref|YP_004038088.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2534) HTH_20 PF12840.7 gi|313116965|ref|YP_004038089.1| - 1e-11 44.7 0.2 1.5e-11 44.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313116965|ref|YP_004038089.1| - 0.00013 21.7 0.0 0.00029 20.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313116965|ref|YP_004038089.1| - 0.00051 19.9 0.0 0.00074 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313116965|ref|YP_004038089.1| - 0.014 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|313116965|ref|YP_004038089.1| - 0.078 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_10 PF04967.12 gi|313116966|ref|YP_004038090.1| - 1.5e-18 66.4 0.1 2.4e-18 65.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|313116966|ref|YP_004038090.1| - 0.0021 17.8 1.7 0.1 12.4 0.0 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain BAT PF15915.5 gi|313116966|ref|YP_004038090.1| - 0.0038 17.1 0.2 0.0075 16.2 0.2 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PuR_N PF09182.10 gi|313116966|ref|YP_004038090.1| - 0.0068 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal MarR_2 PF12802.7 gi|313116966|ref|YP_004038090.1| - 0.012 15.5 0.2 0.051 13.5 0.1 2.2 3 0 0 3 3 3 0 MarR family HTH_35 PF13693.6 gi|313116966|ref|YP_004038090.1| - 0.03 14.4 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 gi|313116966|ref|YP_004038090.1| - 0.047 13.3 0.0 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NYD-SP28 PF14772.6 gi|313116966|ref|YP_004038090.1| - 0.072 13.1 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Sperm tail HTH_20 PF12840.7 gi|313116966|ref|YP_004038090.1| - 0.076 13.1 0.7 0.92 9.6 0.4 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|313116966|ref|YP_004038090.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2249 PF10006.9 gi|313116967|ref|YP_004038091.1| - 1.8e-21 75.7 0.1 2.1e-21 75.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|313116968|ref|YP_004038092.1| - 5e-15 55.1 0.8 5.9e-15 54.9 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|313116968|ref|YP_004038092.1| - 0.00041 20.1 0.0 0.00051 19.8 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Y2_Tnp PF04986.13 gi|313116968|ref|YP_004038092.1| - 0.057 13.5 0.0 0.07 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative transposase Radical_SAM PF04055.21 gi|313116969|ref|YP_004038093.1| - 5.3e-19 69.2 0.0 7.2e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|313116969|ref|YP_004038093.1| - 3.8e-06 27.2 0.0 5.9e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|313116969|ref|YP_004038093.1| - 4.4e-05 23.6 0.0 9.1e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|313116969|ref|YP_004038093.1| - 0.00047 20.6 0.0 0.0011 19.5 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain GlutR_dimer PF00745.20 gi|313116970|ref|YP_004038094.1| - 5.8e-09 36.3 1.1 7e-09 36.0 1.1 1.1 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain EcoEI_R_C PF08463.10 gi|313116970|ref|YP_004038094.1| - 0.051 13.7 0.0 0.055 13.6 0.0 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal DUF2564 PF10819.8 gi|313116970|ref|YP_004038094.1| - 0.065 13.6 0.3 0.092 13.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2564) Copper-bind PF00127.20 gi|313116971|ref|YP_004038095.1| - 5.5e-15 55.6 1.2 2.7e-14 53.4 1.2 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313116971|ref|YP_004038095.1| - 5e-05 23.3 0.1 7.1e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|313116971|ref|YP_004038095.1| - 0.00056 19.6 2.4 0.001 18.8 2.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ACCA PF03255.14 gi|313116974|ref|YP_004038098.1| - 0.095 12.6 0.0 0.095 12.6 0.0 1.1 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Ectatomin PF06457.11 gi|313116974|ref|YP_004038098.1| - 0.17 11.8 0.0 0.27 11.2 0.0 1.4 1 1 0 1 1 1 0 Ectatomin Cu-oxidase_2 PF07731.14 gi|313116975|ref|YP_004038099.1| - 7.7e-30 103.4 13.3 2.1e-18 66.4 4.2 3.0 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|313116975|ref|YP_004038099.1| - 2.5e-22 79.1 5.6 1.1e-18 67.4 0.5 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|313116975|ref|YP_004038099.1| - 5.3e-12 46.1 0.2 2.3e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|313116975|ref|YP_004038099.1| - 3.5e-06 27.1 0.0 0.026 14.6 0.0 2.6 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|313116975|ref|YP_004038099.1| - 0.081 12.8 2.2 0.13 12.1 2.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|313116976|ref|YP_004038100.1| - 2e-29 101.9 8.5 3.7e-14 52.9 0.8 3.3 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family DUF2924 PF11149.8 gi|313116976|ref|YP_004038100.1| - 0.039 14.3 0.4 6.1 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) DUF272 PF03312.15 gi|313116976|ref|YP_004038100.1| - 0.099 12.9 0.1 21 5.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF272) Herpes_LMP2 PF07415.11 gi|313116976|ref|YP_004038100.1| - 7.7 5.2 6.5 13 4.4 6.5 1.3 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein Peripla_BP_2 PF01497.18 gi|313116977|ref|YP_004038101.1| - 5e-15 55.7 0.0 7.1e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein UCR_Fe-S_N PF10399.9 gi|313116977|ref|YP_004038101.1| - 1.5 8.2 4.1 29 4.1 0.0 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Aminotran_5 PF00266.19 gi|313116978|ref|YP_004038102.1| - 7.6e-147 489.1 0.0 9.1e-147 488.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V NifU_N PF01592.16 gi|313116978|ref|YP_004038102.1| - 1.1e-14 54.7 0.0 2e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain DegT_DnrJ_EryC1 PF01041.17 gi|313116978|ref|YP_004038102.1| - 1.6e-10 40.8 0.3 2.9e-10 40.0 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|313116978|ref|YP_004038102.1| - 1.8e-06 27.4 0.0 2.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|313116978|ref|YP_004038102.1| - 7e-05 21.5 0.1 0.00015 20.4 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|313116978|ref|YP_004038102.1| - 0.0074 15.0 0.0 0.026 13.3 0.1 1.7 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|313116978|ref|YP_004038102.1| - 0.056 12.4 0.0 0.24 10.3 0.0 1.8 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Cloacin PF03515.14 gi|313116978|ref|YP_004038102.1| - 0.22 11.2 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain Glyoxalase PF00903.25 gi|313116979|ref|YP_004038103.1| - 1.3e-16 60.9 0.0 1.6e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313116979|ref|YP_004038103.1| - 9.9e-12 45.1 0.0 1.2e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|313116979|ref|YP_004038103.1| - 2e-06 27.7 0.0 1.2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|313116979|ref|YP_004038103.1| - 0.00016 21.9 0.0 0.00025 21.2 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|313116979|ref|YP_004038103.1| - 0.00035 21.3 0.0 0.00049 20.9 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Cdc6_C PF09079.11 gi|313116980|ref|YP_004038104.1| - 2e-16 59.7 0.1 9.1e-16 57.6 0.0 2.2 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|313116980|ref|YP_004038104.1| - 4.6e-13 49.9 0.3 1.8e-12 48.0 0.3 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313116980|ref|YP_004038104.1| - 7.1e-12 45.8 0.1 2.3e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|313116980|ref|YP_004038104.1| - 3.9e-06 26.2 0.0 9.7e-06 24.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|313116980|ref|YP_004038104.1| - 2.9e-05 24.1 0.0 7.1e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313116980|ref|YP_004038104.1| - 3.9e-05 24.1 0.2 0.00013 22.4 0.2 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313116980|ref|YP_004038104.1| - 4.9e-05 23.1 0.0 9.4e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.22 gi|313116980|ref|YP_004038104.1| - 0.00022 20.5 0.0 0.00031 20.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|313116980|ref|YP_004038104.1| - 0.00031 20.9 0.0 0.028 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|313116980|ref|YP_004038104.1| - 0.00053 19.8 0.6 0.011 15.5 0.3 2.3 1 1 1 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|313116980|ref|YP_004038104.1| - 0.00074 20.0 0.0 0.0021 18.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.12 gi|313116980|ref|YP_004038104.1| - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_32 PF13654.6 gi|313116980|ref|YP_004038104.1| - 0.00091 18.1 0.1 0.21 10.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain DUF2791 PF10923.8 gi|313116980|ref|YP_004038104.1| - 0.001 18.0 0.0 0.0061 15.4 0.0 2.0 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) RNA_helicase PF00910.22 gi|313116980|ref|YP_004038104.1| - 0.0016 18.8 0.1 0.0056 17.1 0.1 2.1 1 1 0 1 1 1 1 RNA helicase AAA_30 PF13604.6 gi|313116980|ref|YP_004038104.1| - 0.0036 17.1 0.2 0.01 15.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|313116980|ref|YP_004038104.1| - 0.0048 16.4 0.1 0.015 14.8 0.1 1.8 1 1 1 2 2 2 1 P-loop containing dynein motor region TniB PF05621.11 gi|313116980|ref|YP_004038104.1| - 0.006 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_25 PF13481.6 gi|313116980|ref|YP_004038104.1| - 0.009 15.6 0.7 0.17 11.5 0.0 2.9 2 2 0 2 2 2 1 AAA domain KAP_NTPase PF07693.14 gi|313116980|ref|YP_004038104.1| - 0.011 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain PhoH PF02562.16 gi|313116980|ref|YP_004038104.1| - 0.015 14.7 0.1 1.5 8.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein ATPase_2 PF01637.18 gi|313116980|ref|YP_004038104.1| - 0.017 15.1 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DnaB_C PF03796.15 gi|313116980|ref|YP_004038104.1| - 0.047 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DEAD PF00270.29 gi|313116980|ref|YP_004038104.1| - 0.049 13.4 1.2 5.3 6.8 0.1 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|313116980|ref|YP_004038104.1| - 0.049 13.6 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DAP3 PF10236.9 gi|313116980|ref|YP_004038104.1| - 0.058 12.6 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_2 PF07724.14 gi|313116980|ref|YP_004038104.1| - 0.063 13.4 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PIF1 PF05970.14 gi|313116980|ref|YP_004038104.1| - 0.066 12.4 0.1 0.34 10.0 0.1 2.1 2 1 0 2 2 2 0 PIF1-like helicase AAA_lid_3 PF17862.1 gi|313116980|ref|YP_004038104.1| - 0.075 12.9 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA+ lid domain Phage-MuB_C PF09077.11 gi|313116980|ref|YP_004038104.1| - 0.08 12.8 0.9 0.44 10.5 0.0 2.6 2 1 0 2 2 2 0 Mu B transposition protein, C terminal Zeta_toxin PF06414.12 gi|313116980|ref|YP_004038104.1| - 0.083 12.2 0.1 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|313116981|ref|YP_004038105.1| - 6.6e-39 133.4 0.0 1.9e-38 131.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313116981|ref|YP_004038105.1| - 1.2e-08 34.6 0.2 3.7e-08 33.1 0.2 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|313116981|ref|YP_004038105.1| - 1.4e-06 28.4 0.6 9.9e-06 25.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|313116981|ref|YP_004038105.1| - 2.9e-05 24.2 0.1 0.00014 22.1 0.0 2.2 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.12 gi|313116981|ref|YP_004038105.1| - 3.5e-05 23.6 0.0 0.00013 21.7 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|313116981|ref|YP_004038105.1| - 7.6e-05 23.3 0.0 0.00015 22.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|313116981|ref|YP_004038105.1| - 0.00016 22.0 1.3 0.0017 18.6 0.3 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313116981|ref|YP_004038105.1| - 0.0026 18.1 0.1 0.0026 18.1 0.1 3.5 2 2 1 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|313116981|ref|YP_004038105.1| - 0.0048 16.6 0.0 0.015 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|313116981|ref|YP_004038105.1| - 0.0054 16.3 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|313116981|ref|YP_004038105.1| - 0.007 15.6 0.4 0.29 10.3 0.0 2.5 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.13 gi|313116981|ref|YP_004038105.1| - 0.0082 15.4 0.0 0.015 14.6 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|313116981|ref|YP_004038105.1| - 0.0085 16.1 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|313116981|ref|YP_004038105.1| - 0.0085 15.3 0.0 0.15 11.2 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|313116981|ref|YP_004038105.1| - 0.0094 15.7 0.0 0.025 14.3 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|313116981|ref|YP_004038105.1| - 0.01 15.9 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_3 PF07726.11 gi|313116981|ref|YP_004038105.1| - 0.016 15.0 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|313116981|ref|YP_004038105.1| - 0.029 14.3 0.3 9.8 6.1 0.0 2.5 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|313116981|ref|YP_004038105.1| - 0.033 14.6 0.0 0.067 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|313116981|ref|YP_004038105.1| - 0.054 13.7 6.6 0.25 11.6 0.0 3.6 3 1 0 3 3 3 0 AAA domain Cytidylate_kin2 PF13189.6 gi|313116981|ref|YP_004038105.1| - 0.056 13.6 0.1 0.84 9.7 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_11 PF13086.6 gi|313116981|ref|YP_004038105.1| - 0.063 13.1 0.1 0.19 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|313116981|ref|YP_004038105.1| - 0.071 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_19 PF13245.6 gi|313116981|ref|YP_004038105.1| - 0.082 13.2 0.2 0.26 11.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|313116981|ref|YP_004038105.1| - 0.084 13.0 0.0 0.31 11.1 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.10 gi|313116981|ref|YP_004038105.1| - 0.089 12.2 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.18 gi|313116981|ref|YP_004038105.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TsaE PF02367.17 gi|313116981|ref|YP_004038105.1| - 0.12 12.3 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|313116981|ref|YP_004038105.1| - 0.16 11.5 0.0 0.37 10.3 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region DXP_reductoisom PF02670.16 gi|313116981|ref|YP_004038105.1| - 0.44 11.3 1.4 0.66 10.7 0.1 1.9 2 0 0 2 2 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDE_Tnp_IS240 PF13610.6 gi|313116982|ref|YP_004038106.1| - 3.6e-32 111.5 0.0 6.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313116982|ref|YP_004038106.1| - 4.1e-07 29.7 0.3 8.8e-07 28.6 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313116982|ref|YP_004038106.1| - 0.031 14.5 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313116982|ref|YP_004038106.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313116982|ref|YP_004038106.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family Cylicin_N PF15241.6 gi|313116983|ref|YP_004038107.1| - 0.078 13.1 1.0 0.15 12.2 0.1 1.9 1 1 1 2 2 2 0 Cylicin N-terminus Presenilin PF01080.17 gi|313116983|ref|YP_004038107.1| - 0.17 10.6 7.7 0.18 10.5 7.7 1.0 1 0 0 1 1 1 0 Presenilin Borrelia_P83 PF05262.11 gi|313116983|ref|YP_004038107.1| - 0.29 9.6 10.0 0.33 9.4 10.0 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Spore_coat_CotO PF14153.6 gi|313116983|ref|YP_004038107.1| - 0.4 10.6 13.2 0.49 10.3 13.2 1.2 1 0 0 1 1 1 0 Spore coat protein CotO Mucin PF01456.17 gi|313116983|ref|YP_004038107.1| - 1.1 9.2 8.3 1.4 8.9 8.3 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF4746 PF15928.5 gi|313116983|ref|YP_004038107.1| - 1.1 8.6 12.3 1.4 8.2 12.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) NPR3 PF03666.13 gi|313116983|ref|YP_004038107.1| - 1.7 7.3 12.7 1.8 7.3 12.7 1.0 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Sec62 PF03839.16 gi|313116983|ref|YP_004038107.1| - 3 7.3 8.9 3.3 7.2 8.9 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 Hid1 PF12722.7 gi|313116983|ref|YP_004038107.1| - 7 4.6 9.8 7.7 4.5 9.8 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein SAPS PF04499.15 gi|313116983|ref|YP_004038107.1| - 7.3 5.2 13.0 8.5 5.0 13.0 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein CDC45 PF02724.14 gi|313116983|ref|YP_004038107.1| - 7.4 4.7 16.0 8.2 4.6 16.0 1.1 1 0 0 1 1 1 0 CDC45-like protein SLC12 PF03522.15 gi|313116983|ref|YP_004038107.1| - 9.1 5.2 8.6 10 5.0 8.6 1.1 1 0 0 1 1 1 0 Solute carrier family 12 AAA_31 PF13614.6 gi|313116984|ref|YP_004038108.1| - 6.5e-44 150.0 0.0 9.4e-44 149.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313116984|ref|YP_004038108.1| - 9.2e-21 74.2 0.0 1.2e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|313116984|ref|YP_004038108.1| - 1.5e-12 47.4 2.2 1.1e-05 24.9 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|313116984|ref|YP_004038108.1| - 7.6e-10 38.7 0.0 2.8e-09 36.8 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|313116984|ref|YP_004038108.1| - 2.4e-09 37.0 0.2 2.1e-08 33.9 0.2 2.3 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|313116984|ref|YP_004038108.1| - 2.4e-08 33.8 0.0 0.00016 21.3 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|313116984|ref|YP_004038108.1| - 6.3e-07 28.9 1.9 7.3e-06 25.4 0.6 3.2 1 1 2 3 3 3 1 Anion-transporting ATPase ATP_bind_1 PF03029.17 gi|313116984|ref|YP_004038108.1| - 0.0072 16.1 3.8 0.67 9.7 3.3 3.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein adh_short_C2 PF13561.6 gi|313116984|ref|YP_004038108.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase CLP1_P PF16575.5 gi|313116984|ref|YP_004038108.1| - 0.045 13.5 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|313116984|ref|YP_004038108.1| - 0.11 12.3 0.0 0.26 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Pyridox_ox_2 PF12900.7 gi|313116985|ref|YP_004038109.1| - 1.2e-17 64.2 0.0 1.3e-17 64.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|313116985|ref|YP_004038109.1| - 0.00055 20.1 0.0 0.0007 19.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FB_lectin PF07367.11 gi|313116985|ref|YP_004038109.1| - 0.046 13.7 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Fungal fruit body lectin PPDK_N PF01326.19 gi|313116986|ref|YP_004038110.1| - 4.7e-81 272.6 0.0 6.7e-81 272.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|313116986|ref|YP_004038110.1| - 3.3e-21 74.8 0.2 7.4e-21 73.7 0.2 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PDEase_I_N PF08499.12 gi|313116986|ref|YP_004038110.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal Beta-lactamase PF00144.24 gi|313116987|ref|YP_004038111.1| - 1.2e-51 175.9 1.4 2.2e-51 175.1 1.4 1.3 1 0 0 1 1 1 1 Beta-lactamase TMEM65 PF10507.9 gi|313116987|ref|YP_004038111.1| - 0.044 13.7 0.1 0.27 11.2 0.0 2.3 2 0 0 2 2 2 0 Transmembrane protein 65 Usp PF00582.26 gi|313116988|ref|YP_004038112.1| - 0.044 14.3 0.0 1.9 9.0 0.0 2.8 3 0 0 3 3 3 0 Universal stress protein family IU_nuc_hydro PF01156.19 gi|313116990|ref|YP_004038114.1| - 9.7e-79 265.1 0.8 1.1e-78 264.9 0.8 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase adh_short_C2 PF13561.6 gi|313116991|ref|YP_004038115.1| - 1.2e-68 231.2 0.1 1.5e-68 230.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313116991|ref|YP_004038115.1| - 6.9e-55 185.5 0.1 8.9e-55 185.2 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313116991|ref|YP_004038115.1| - 1.1e-15 58.0 0.0 1.9e-15 57.3 0.0 1.4 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|313116991|ref|YP_004038115.1| - 0.00043 20.2 0.1 0.0006 19.7 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|313116991|ref|YP_004038115.1| - 0.00075 19.0 0.1 0.0013 18.3 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313116991|ref|YP_004038115.1| - 0.002 17.2 0.1 0.0025 16.9 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|313116991|ref|YP_004038115.1| - 0.0061 16.8 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|313116991|ref|YP_004038115.1| - 0.0089 15.4 0.8 0.013 14.8 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|313116991|ref|YP_004038115.1| - 0.014 15.5 0.1 0.025 14.6 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DFP PF04127.15 gi|313116991|ref|YP_004038115.1| - 0.034 14.0 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein PfkB PF00294.24 gi|313116992|ref|YP_004038116.1| - 4.7e-42 144.3 5.9 1.3e-41 142.8 5.9 1.8 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|313116992|ref|YP_004038116.1| - 5.4e-06 26.0 0.0 0.00035 20.0 0.0 2.6 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|313116992|ref|YP_004038116.1| - 0.00033 20.2 0.6 0.0018 17.8 0.6 2.0 1 1 0 1 1 1 1 Carbohydrate kinase PepSY_2 PF13670.6 gi|313116992|ref|YP_004038116.1| - 0.016 15.2 0.9 0.048 13.7 0.9 1.8 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain XdhC_C PF13478.6 gi|313116992|ref|YP_004038116.1| - 0.051 14.1 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 2 0 XdhC Rossmann domain DUF4232 PF14016.6 gi|313116993|ref|YP_004038117.1| - 0.0018 18.4 2.2 0.0051 17.0 0.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF4232) BsuPI PF12690.7 gi|313116993|ref|YP_004038117.1| - 0.017 15.1 0.0 0.29 11.2 0.0 2.2 1 1 0 1 1 1 0 Intracellular proteinase inhibitor Pyr_redox_2 PF07992.14 gi|313116994|ref|YP_004038118.1| - 9.1e-12 44.8 0.5 2.9e-07 30.0 0.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313116994|ref|YP_004038118.1| - 2.3e-08 33.7 0.0 0.004 16.4 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313116994|ref|YP_004038118.1| - 2.4e-07 30.7 4.9 2.3e-05 24.2 0.6 2.9 1 1 3 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|313116994|ref|YP_004038118.1| - 1e-06 28.1 0.5 3e-06 26.6 0.5 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|313116994|ref|YP_004038118.1| - 1.5e-06 27.5 3.7 3.4e-06 26.4 0.1 2.7 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.7 gi|313116994|ref|YP_004038118.1| - 2.5e-06 27.1 0.7 2.5e-06 27.1 0.7 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313116994|ref|YP_004038118.1| - 4.1e-06 25.7 0.1 0.00011 21.1 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|313116994|ref|YP_004038118.1| - 4.5e-06 26.8 0.3 1.1e-05 25.5 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|313116994|ref|YP_004038118.1| - 9.8e-06 25.0 0.0 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|313116994|ref|YP_004038118.1| - 2.1e-05 23.8 0.1 0.0082 15.2 0.0 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|313116994|ref|YP_004038118.1| - 0.00048 19.5 0.0 0.00072 18.9 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|313116994|ref|YP_004038118.1| - 0.0013 19.2 0.1 0.0045 17.5 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313116994|ref|YP_004038118.1| - 0.0021 17.3 0.1 0.0073 15.6 0.0 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 gi|313116994|ref|YP_004038118.1| - 0.084 12.9 3.7 0.93 9.5 0.1 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding TMP-TENI PF02581.17 gi|313116995|ref|YP_004038119.1| - 1.6e-60 203.6 3.4 2.2e-60 203.1 3.4 1.2 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|313116995|ref|YP_004038119.1| - 2.4e-06 27.1 3.9 2.4e-06 27.1 3.9 2.1 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|313116995|ref|YP_004038119.1| - 3e-05 23.4 2.6 3e-05 23.4 2.6 1.7 1 1 1 2 2 2 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|313116995|ref|YP_004038119.1| - 6.7e-05 22.4 7.2 9.1e-05 22.0 7.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.12 gi|313116995|ref|YP_004038119.1| - 0.024 13.8 0.5 0.065 12.4 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|313116995|ref|YP_004038119.1| - 0.027 14.0 3.7 0.062 12.8 1.4 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein Dus PF01207.17 gi|313116995|ref|YP_004038119.1| - 0.1 11.7 0.9 0.14 11.3 0.5 1.5 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) TniB PF05621.11 gi|313116995|ref|YP_004038119.1| - 0.13 11.7 0.1 15 4.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein HK PF02110.15 gi|313116996|ref|YP_004038120.1| - 9.4e-64 215.1 4.9 1.2e-63 214.8 4.9 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|313116996|ref|YP_004038120.1| - 1.6e-05 24.4 0.5 2.1e-05 24.0 0.5 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|313116996|ref|YP_004038120.1| - 0.13 11.7 8.3 0.076 12.5 5.1 1.8 1 1 1 2 2 2 0 Carbohydrate kinase adh_short_C2 PF13561.6 gi|313116997|ref|YP_004038121.1| - 1.3e-48 165.6 0.3 1.6e-48 165.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313116997|ref|YP_004038121.1| - 1e-42 145.9 0.2 1.4e-42 145.4 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313116997|ref|YP_004038121.1| - 5.1e-19 68.9 0.2 6.7e-19 68.5 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313116997|ref|YP_004038121.1| - 1.4e-07 31.2 0.3 3e-07 30.2 0.3 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|313116997|ref|YP_004038121.1| - 0.00024 20.3 0.0 0.00027 20.2 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|313116997|ref|YP_004038121.1| - 0.0041 17.0 3.0 0.006 16.5 2.9 1.4 1 1 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|313116997|ref|YP_004038121.1| - 0.019 14.0 0.1 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|313116997|ref|YP_004038121.1| - 0.029 14.6 0.6 0.064 13.5 0.6 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|313116997|ref|YP_004038121.1| - 0.043 12.9 0.1 0.06 12.4 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Phos_pyr_kin PF08543.12 gi|313116998|ref|YP_004038122.1| - 7.3e-84 281.0 0.2 8.7e-84 280.7 0.2 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|313116998|ref|YP_004038122.1| - 7.9e-08 32.0 0.9 1.8e-07 30.8 0.9 1.5 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|313116998|ref|YP_004038122.1| - 0.0084 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|313116998|ref|YP_004038122.1| - 0.032 13.6 0.7 0.19 11.1 0.7 2.0 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family DrsE_2 PF13686.6 gi|313116999|ref|YP_004038123.1| - 3.1e-52 176.5 0.1 4e-52 176.2 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|313116999|ref|YP_004038123.1| - 3.1e-08 34.0 0.0 1.2e-07 32.1 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|313117000|ref|YP_004038124.1| - 7e-21 73.8 0.0 8e-21 73.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|313117000|ref|YP_004038124.1| - 0.17 11.8 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.27 gi|313117001|ref|YP_004038125.1| - 5.1e-20 72.3 4.8 7.4e-20 71.8 4.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|313117001|ref|YP_004038125.1| - 2.9e-09 37.4 0.0 5.6e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|313117001|ref|YP_004038125.1| - 0.00011 21.8 0.8 0.00031 20.3 0.9 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|313117001|ref|YP_004038125.1| - 0.069 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Sulf_transp PF04143.14 gi|313117002|ref|YP_004038126.1| - 1.3e-12 47.9 11.8 1.6e-12 47.6 11.8 1.1 1 0 0 1 1 1 1 Sulphur transport GXGXG PF01493.19 gi|313117002|ref|YP_004038126.1| - 0.079 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 GXGXG motif Sulf_transp PF04143.14 gi|313117003|ref|YP_004038127.1| - 5.4e-08 32.7 18.1 8.2e-08 32.2 7.4 2.0 1 1 1 2 2 2 2 Sulphur transport DUF2207 PF09972.9 gi|313117003|ref|YP_004038127.1| - 0.44 9.3 7.8 0.02 13.7 0.8 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ribonuc_red_sm PF00268.21 gi|313117005|ref|YP_004038129.1| - 1.1e-79 267.9 0.0 1.4e-79 267.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Ribonuc_red_lgC PF02867.15 gi|313117006|ref|YP_004038130.1| - 1.2e-182 608.1 0.0 1.5e-182 607.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|313117006|ref|YP_004038130.1| - 2.7e-21 75.4 0.0 2.1e-20 72.5 0.0 2.4 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TipAS PF07739.13 gi|313117006|ref|YP_004038130.1| - 0.077 13.5 0.2 5.1 7.7 0.0 2.7 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain ATP-cone PF03477.16 gi|313117006|ref|YP_004038130.1| - 0.16 12.5 0.2 0.61 10.7 0.2 2.0 1 0 0 1 1 1 0 ATP cone domain ATP-cone PF03477.16 gi|313117007|ref|YP_004038131.1| - 2.4e-15 56.9 0.1 3.3e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.7 gi|313117007|ref|YP_004038131.1| - 0.0017 18.3 1.5 0.0026 17.7 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|313117007|ref|YP_004038131.1| - 0.011 15.6 3.2 0.019 14.8 3.2 1.4 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 gi|313117007|ref|YP_004038131.1| - 0.089 12.3 3.4 0.12 11.9 0.6 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.13 gi|313117007|ref|YP_004038131.1| - 0.092 12.8 0.4 0.16 12.1 0.1 1.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ZPR1 PF03367.13 gi|313117007|ref|YP_004038131.1| - 0.23 11.3 0.6 1.4 8.8 0.1 2.0 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Na_Ca_ex PF01699.24 gi|313117008|ref|YP_004038132.1| - 1.9e-40 138.3 34.4 9.7e-22 77.6 13.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein APH PF01636.23 gi|313117010|ref|YP_004038134.1| - 3.3e-19 69.8 4.3 5.7e-19 69.0 4.3 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|313117010|ref|YP_004038134.1| - 2.2e-07 30.4 0.0 2.2e-06 27.1 0.0 2.4 1 1 0 1 1 1 1 Fructosamine kinase DUF4128 PF13554.6 gi|313117010|ref|YP_004038134.1| - 0.006 16.6 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage related domain of unknown function HD PF01966.22 gi|313117010|ref|YP_004038134.1| - 0.095 12.9 0.4 0.27 11.5 0.4 1.7 1 1 0 1 1 1 0 HD domain Peptidase_S8 PF00082.22 gi|313117011|ref|YP_004038135.1| - 9.6e-27 94.0 2.2 1.9e-26 93.0 2.2 1.4 1 1 0 1 1 1 1 Subtilase family Rhomboid PF01694.22 gi|313117012|ref|YP_004038136.1| - 5.3e-18 65.4 19.6 5.3e-18 65.4 19.6 1.7 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|313117012|ref|YP_004038136.1| - 0.2 12.2 0.1 0.2 12.2 0.1 2.5 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) HTH_24 PF13412.6 gi|313117013|ref|YP_004038137.1| - 7.2e-08 31.9 0.0 1.1e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313117013|ref|YP_004038137.1| - 6.8e-07 29.1 0.1 8.1e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313117013|ref|YP_004038137.1| - 1.1e-06 28.5 0.0 1.3e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|313117013|ref|YP_004038137.1| - 2.5e-05 23.8 0.1 3.6e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|313117013|ref|YP_004038137.1| - 0.0003 20.5 0.2 0.00044 20.0 0.2 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_CodY PF08222.11 gi|313117013|ref|YP_004038137.1| - 0.00078 18.9 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|313117013|ref|YP_004038137.1| - 0.0011 18.8 0.1 0.0018 18.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|313117013|ref|YP_004038137.1| - 0.0016 18.3 0.1 0.0025 17.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|313117013|ref|YP_004038137.1| - 0.0018 18.2 0.0 0.0034 17.3 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313117013|ref|YP_004038137.1| - 0.002 18.0 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|313117013|ref|YP_004038137.1| - 0.0021 17.9 0.1 0.0025 17.6 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|313117013|ref|YP_004038137.1| - 0.0021 18.1 0.1 0.0029 17.6 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313117013|ref|YP_004038137.1| - 0.0041 17.6 0.1 0.0051 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|313117013|ref|YP_004038137.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.19 gi|313117013|ref|YP_004038137.1| - 0.013 15.3 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|313117013|ref|YP_004038137.1| - 0.016 15.3 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|313117013|ref|YP_004038137.1| - 0.026 14.9 0.0 0.037 14.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_54 PF18607.1 gi|313117013|ref|YP_004038137.1| - 0.064 13.3 0.0 0.08 13.0 0.0 1.2 1 0 0 1 1 1 0 ParA helix turn helix domain RepL PF05732.11 gi|313117013|ref|YP_004038137.1| - 0.071 12.5 0.0 0.085 12.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_43 PF09904.9 gi|313117013|ref|YP_004038137.1| - 0.14 12.1 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Pyr_redox_2 PF07992.14 gi|313117014|ref|YP_004038138.1| - 3.5e-17 62.6 3.2 4.4e-08 32.7 1.4 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|313117014|ref|YP_004038138.1| - 9.1e-11 41.9 0.3 0.00027 20.6 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|313117014|ref|YP_004038138.1| - 9.2e-11 41.5 0.0 0.00029 20.2 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313117014|ref|YP_004038138.1| - 6.6e-10 38.2 0.0 3.3e-06 26.0 0.0 2.1 1 1 1 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|313117014|ref|YP_004038138.1| - 8e-09 35.7 0.1 1.1e-05 25.5 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|313117014|ref|YP_004038138.1| - 3.3e-07 29.8 0.6 4.8e-05 22.6 0.1 2.4 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|313117014|ref|YP_004038138.1| - 4.9e-07 29.2 0.2 1.2e-06 27.9 0.0 1.7 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|313117014|ref|YP_004038138.1| - 1.2e-06 28.0 0.1 8e-05 22.0 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|313117014|ref|YP_004038138.1| - 9.6e-06 25.7 0.0 2.8e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|313117014|ref|YP_004038138.1| - 1.1e-05 24.5 1.8 0.0024 16.8 0.5 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|313117014|ref|YP_004038138.1| - 4e-05 23.1 0.0 6.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|313117014|ref|YP_004038138.1| - 6.8e-05 22.3 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|313117014|ref|YP_004038138.1| - 0.00017 20.8 0.3 0.057 12.5 0.1 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|313117014|ref|YP_004038138.1| - 0.0014 17.9 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|313117014|ref|YP_004038138.1| - 0.0067 17.0 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|313117014|ref|YP_004038138.1| - 0.016 14.5 0.1 0.059 12.7 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase XdhC_C PF13478.6 gi|313117014|ref|YP_004038138.1| - 0.09 13.3 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|313117014|ref|YP_004038138.1| - 0.13 12.7 0.0 0.17 12.3 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding LPG_synthase_TM PF03706.13 gi|313117015|ref|YP_004038139.1| - 1.3e-15 57.7 38.4 1.6e-15 57.5 38.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF3917 PF13055.6 gi|313117015|ref|YP_004038139.1| - 3 8.3 7.2 16 6.0 0.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3917) PAS_4 PF08448.10 gi|313117016|ref|YP_004038140.1| - 1.1e-39 135.0 12.9 9.1e-13 48.4 0.2 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|313117016|ref|YP_004038140.1| - 4.5e-28 97.5 0.4 2.6e-12 46.7 0.0 5.3 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|313117016|ref|YP_004038140.1| - 2.6e-24 85.5 0.0 2.3e-11 43.8 0.0 4.6 4 0 0 4 4 4 4 PAS domain Response_reg PF00072.24 gi|313117016|ref|YP_004038140.1| - 4.1e-22 78.5 0.0 1.2e-21 77.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|313117016|ref|YP_004038140.1| - 5e-20 71.1 3.7 9.3e-07 28.7 0.1 4.9 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|313117016|ref|YP_004038140.1| - 2.9e-15 56.8 0.0 6.7e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313117016|ref|YP_004038140.1| - 4.4e-11 42.7 1.5 4.4e-11 42.7 1.5 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|313117016|ref|YP_004038140.1| - 6.2e-10 39.2 0.0 6.8e-06 26.3 0.0 3.8 3 1 0 3 3 3 1 PAS fold PAS_7 PF12860.7 gi|313117016|ref|YP_004038140.1| - 1.9e-07 31.3 0.4 0.019 15.1 0.0 5.1 4 3 1 5 5 5 2 PAS fold OKR_DC_1_N PF03709.15 gi|313117016|ref|YP_004038140.1| - 0.0007 19.8 0.1 0.018 15.3 0.0 3.0 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|313117016|ref|YP_004038140.1| - 0.046 13.7 0.0 0.16 11.9 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PrmC_N PF17827.1 gi|313117016|ref|YP_004038140.1| - 0.075 13.6 0.0 1.8 9.2 0.0 2.9 2 0 0 2 2 2 0 PrmC N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|313117017|ref|YP_004038141.1| - 4.2e-24 84.3 2.3 8.8e-24 83.2 2.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|313117017|ref|YP_004038141.1| - 3.2e-21 75.7 0.0 6.9e-21 74.7 0.0 1.6 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|313117017|ref|YP_004038141.1| - 0.0058 16.9 1.9 0.016 15.5 1.9 1.7 1 0 0 1 1 1 1 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|313117017|ref|YP_004038141.1| - 0.083 12.9 3.8 0.23 11.5 3.8 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|313117017|ref|YP_004038141.1| - 0.13 12.4 2.9 0.096 12.8 0.7 1.9 2 0 0 2 2 2 0 Ribosomal L37ae protein family HalOD1 PF18545.1 gi|313117018|ref|YP_004038142.1| - 2e-17 63.2 0.0 2.5e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 RNA_POL_M_15KD PF02150.16 gi|313117019|ref|YP_004038143.1| - 0.001 18.9 0.9 0.0014 18.5 0.9 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc-ribbons_6 PF07191.12 gi|313117019|ref|YP_004038143.1| - 0.0063 16.5 0.7 0.0089 16.0 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS91 PF14319.6 gi|313117019|ref|YP_004038143.1| - 0.0068 16.4 1.1 0.099 12.7 0.1 2.0 1 1 1 2 2 2 1 Transposase zinc-binding domain DpnI PF06044.12 gi|313117019|ref|YP_004038143.1| - 0.0096 15.6 0.2 0.01 15.5 0.2 1.1 1 0 0 1 1 1 1 Dam-replacing family Lar_restr_allev PF14354.6 gi|313117019|ref|YP_004038143.1| - 0.019 15.3 0.6 0.025 15.0 0.6 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|313117019|ref|YP_004038143.1| - 0.028 14.5 1.2 3.4 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain C1_1 PF00130.22 gi|313117019|ref|YP_004038143.1| - 0.034 14.0 0.5 0.047 13.6 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.6 gi|313117019|ref|YP_004038143.1| - 0.16 11.7 3.6 4 7.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|313117019|ref|YP_004038143.1| - 0.55 10.0 5.5 0.92 9.3 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Usp PF00582.26 gi|313117020|ref|YP_004038144.1| - 3e-64 215.8 6.0 9.4e-35 120.2 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF5615 PF18480.1 gi|313117020|ref|YP_004038144.1| - 0.00047 19.9 0.1 1.3 8.9 0.1 2.8 2 0 0 2 2 2 2 Domain of unknown function (DUF5615) FR47 PF08445.10 gi|313117020|ref|YP_004038144.1| - 0.06 13.3 0.1 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein SHOCT PF09851.9 gi|313117021|ref|YP_004038145.1| - 5.3e-08 32.3 0.2 7.7e-08 31.8 0.2 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|313117021|ref|YP_004038145.1| - 3e-05 24.0 0.5 5.5e-05 23.2 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|313117021|ref|YP_004038145.1| - 0.023 14.8 3.7 0.031 14.3 3.7 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2970 PF11174.8 gi|313117021|ref|YP_004038145.1| - 0.027 14.3 0.3 1.4 8.8 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2970) GvpG PF05120.12 gi|313117021|ref|YP_004038145.1| - 0.053 13.5 0.3 0.075 13.0 0.3 1.2 1 0 0 1 1 1 0 Gas vesicle protein G DUF4131 PF13567.6 gi|313117021|ref|YP_004038145.1| - 0.058 13.0 0.1 0.067 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) YihI PF04220.12 gi|313117021|ref|YP_004038145.1| - 0.078 12.7 0.2 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) TAFH PF07531.14 gi|313117021|ref|YP_004038145.1| - 0.14 12.2 0.2 0.27 11.3 0.0 1.5 2 0 0 2 2 2 0 NHR1 homology to TAF COX1 PF00115.20 gi|313117022|ref|YP_004038146.1| - 6.6e-09 35.1 45.6 0.00025 20.0 16.8 3.8 1 1 2 3 3 3 3 Cytochrome C and Quinol oxidase polypeptide I DUF2964 PF11177.8 gi|313117022|ref|YP_004038146.1| - 7.1 6.9 14.1 3.9 7.7 0.1 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2964) Oxidored_molyb PF00174.19 gi|313117023|ref|YP_004038147.1| - 3.8e-14 52.7 0.0 7e-14 51.8 0.0 1.4 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cupin_2 PF07883.11 gi|313117024|ref|YP_004038148.1| - 2.5e-06 27.1 0.1 3.8e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|313117024|ref|YP_004038148.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_2 PF07883.11 gi|313117025|ref|YP_004038149.1| - 2.3e-08 33.6 0.5 4.3e-08 32.7 0.2 1.6 1 1 1 2 2 2 1 Cupin domain Pirin_C_2 PF17954.1 gi|313117025|ref|YP_004038149.1| - 0.00025 21.2 0.0 0.00033 20.8 0.0 1.1 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain AraC_binding_2 PF14525.6 gi|313117025|ref|YP_004038149.1| - 0.0086 15.8 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain HutD PF05962.11 gi|313117025|ref|YP_004038149.1| - 0.0094 15.9 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 HutD AraC_binding PF02311.19 gi|313117025|ref|YP_004038149.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C PF05726.13 gi|313117025|ref|YP_004038149.1| - 0.098 13.0 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_3 PF05899.12 gi|313117025|ref|YP_004038149.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|313117025|ref|YP_004038149.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain PaaB PF06243.11 gi|313117026|ref|YP_004038150.1| - 1.4e-08 34.8 0.1 2e-08 34.4 0.1 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|313117027|ref|YP_004038151.1| - 4.2e-25 89.0 0.0 1.4e-24 87.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|313117027|ref|YP_004038151.1| - 7.8e-11 42.4 0.0 1.6e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|313117027|ref|YP_004038151.1| - 4.9e-07 29.9 0.0 2.6e-06 27.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|313117027|ref|YP_004038151.1| - 6.4e-05 23.4 0.0 0.00014 22.3 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Hydrolase PF00702.26 gi|313117027|ref|YP_004038151.1| - 0.1 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2249 PF10006.9 gi|313117028|ref|YP_004038152.1| - 1.4e-26 92.1 0.8 1.6e-26 92.0 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|313117028|ref|YP_004038152.1| - 0.02 14.7 0.0 0.049 13.4 0.0 1.6 2 0 0 2 2 2 0 Sulfurtransferase TusA Elf1 PF05129.13 gi|313117030|ref|YP_004038154.1| - 0.028 14.5 0.5 0.032 14.3 0.5 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like UPF0547 PF10571.9 gi|313117030|ref|YP_004038154.1| - 0.19 11.8 3.2 0.48 10.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HTH_10 PF04967.12 gi|313117031|ref|YP_004038155.1| - 4e-18 65.0 0.0 6.4e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313117031|ref|YP_004038155.1| - 0.00022 21.1 0.6 0.0004 20.3 0.6 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GnHR_trans PF12369.8 gi|313117031|ref|YP_004038155.1| - 0.016 16.0 0.1 0.032 15.0 0.1 1.4 1 0 0 1 1 1 0 Gonadotropin hormone receptor transmembrane region DUF3587 PF12132.8 gi|313117031|ref|YP_004038155.1| - 0.054 12.9 0.8 0.094 12.2 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3587) Sigma70_r4 PF04545.16 gi|313117031|ref|YP_004038155.1| - 0.059 12.9 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Pcc1 PF09341.10 gi|313117031|ref|YP_004038155.1| - 0.06 13.5 0.2 0.17 12.1 0.1 1.8 2 0 0 2 2 2 0 Transcription factor Pcc1 LexA_DNA_bind PF01726.16 gi|313117031|ref|YP_004038155.1| - 0.089 12.6 0.1 0.27 11.1 0.1 1.8 1 1 0 1 1 1 0 LexA DNA binding domain GerE PF00196.19 gi|313117031|ref|YP_004038155.1| - 0.15 11.6 0.1 20 4.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family OppC_N PF12911.7 gi|313117032|ref|YP_004038156.1| - 0.96 9.5 10.3 6 6.9 0.9 3.9 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C Rieske PF00355.26 gi|313117033|ref|YP_004038157.1| - 8.8e-13 48.0 0.0 1.3e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HCV_NS1 PF01560.17 gi|313117033|ref|YP_004038157.1| - 0.1 11.2 0.2 0.14 10.8 0.2 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein E2/NS1 Cytochrom_B_N_2 PF13631.6 gi|313117034|ref|YP_004038158.1| - 2.9e-44 151.0 0.8 2.9e-44 151.0 0.8 3.0 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|313117034|ref|YP_004038158.1| - 2.6e-30 105.7 15.1 1e-29 103.8 9.7 2.6 2 1 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|313117034|ref|YP_004038158.1| - 5.7e-05 23.3 1.2 5.7e-05 23.3 1.2 2.5 4 0 0 4 4 4 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|313117034|ref|YP_004038158.1| - 0.00045 20.7 6.6 0.00045 20.7 6.6 3.8 4 1 0 4 4 4 1 Domain of unknown function (DUF4405) SP_C-Propep PF08999.10 gi|313117034|ref|YP_004038158.1| - 0.069 12.9 0.0 0.28 11.0 0.0 2.0 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide Molybdopterin PF00384.22 gi|313117036|ref|YP_004038160.1| - 7.7e-93 311.8 0.0 1.2e-92 311.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|313117036|ref|YP_004038160.1| - 2.4e-20 72.6 0.0 5.2e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|313117036|ref|YP_004038160.1| - 0.038 14.0 0.4 0.094 12.7 0.4 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain HHH_5 PF14520.6 gi|313117036|ref|YP_004038160.1| - 0.061 13.9 0.0 0.21 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain Fer4_11 PF13247.6 gi|313117037|ref|YP_004038161.1| - 3e-29 101.1 6.3 3e-29 101.1 6.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313117037|ref|YP_004038161.1| - 3.9e-11 42.9 18.1 2e-05 24.6 7.8 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|313117037|ref|YP_004038161.1| - 1.1e-10 41.9 15.7 5.6e-05 23.7 7.3 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313117037|ref|YP_004038161.1| - 6.6e-08 32.6 18.5 0.0034 17.5 7.0 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|313117037|ref|YP_004038161.1| - 0.00013 22.6 5.1 0.24 12.2 0.1 3.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|313117037|ref|YP_004038161.1| - 0.00022 21.2 29.5 0.0021 18.1 2.3 4.0 5 0 0 5 5 3 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|313117037|ref|YP_004038161.1| - 0.00034 21.1 19.6 0.11 13.1 0.1 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|313117037|ref|YP_004038161.1| - 0.00056 20.0 18.4 0.03 14.5 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313117037|ref|YP_004038161.1| - 0.00076 19.2 29.8 0.014 15.2 2.7 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|313117037|ref|YP_004038161.1| - 0.00086 19.3 26.4 0.011 15.8 0.9 4.2 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|313117037|ref|YP_004038161.1| - 0.016 15.7 1.3 0.016 15.7 1.3 4.1 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|313117037|ref|YP_004038161.1| - 0.18 12.4 14.0 0.21 12.2 0.1 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|313117037|ref|YP_004038161.1| - 0.69 11.0 35.2 0.11 13.4 5.8 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|313117037|ref|YP_004038161.1| - 2.4 9.2 27.1 5.8 7.9 1.0 4.0 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|313117037|ref|YP_004038161.1| - 4.6 7.8 23.8 2.5e+02 2.2 1.1 4.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain EB_dh PF09459.10 gi|313117038|ref|YP_004038162.1| - 8.2e-29 101.3 5.7 2.8e-14 53.7 0.1 2.1 1 1 1 2 2 2 2 Ethylbenzene dehydrogenase MSP1a PF11670.8 gi|313117038|ref|YP_004038162.1| - 0.079 12.2 1.6 0.15 11.3 1.6 1.4 1 0 0 1 1 1 0 Major surface protein 1a (MSP1a) Nitrate_red_del PF02613.15 gi|313117039|ref|YP_004038163.1| - 6.1e-10 39.2 0.1 1.7e-09 37.8 0.1 1.9 1 1 0 1 1 1 1 Nitrate reductase delta subunit FixS PF03597.15 gi|313117040|ref|YP_004038164.1| - 0.0097 15.6 1.1 0.0097 15.6 1.1 4.3 5 1 1 7 7 7 1 Cytochrome oxidase maturation protein cbb3-type HEAT_2 PF13646.6 gi|313117041|ref|YP_004038165.1| - 3.6e-22 78.6 22.8 1.8e-12 47.5 6.4 3.2 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|313117041|ref|YP_004038165.1| - 7.9e-10 38.1 11.8 0.001 19.1 0.0 6.0 6 0 0 6 6 6 2 HEAT repeat Cnd1 PF12717.7 gi|313117041|ref|YP_004038165.1| - 0.00033 20.7 0.1 3.5 7.6 0.0 3.9 1 1 3 4 4 4 2 non-SMC mitotic condensation complex subunit 1 HEAT_PBS PF03130.16 gi|313117041|ref|YP_004038165.1| - 0.0037 17.8 16.6 1.2 10.0 0.1 5.6 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|313117041|ref|YP_004038165.1| - 0.0078 16.7 15.6 0.14 12.7 0.1 4.7 4 2 1 5 5 5 3 HEAT-like repeat DUF2019 PF09450.10 gi|313117041|ref|YP_004038165.1| - 0.025 14.5 0.3 0.066 13.2 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2019) Vac14_Fab1_bd PF12755.7 gi|313117041|ref|YP_004038165.1| - 0.06 13.9 0.0 7.9 7.2 0.0 2.7 2 1 0 2 2 2 0 Vacuolar 14 Fab1-binding region ParA PF10609.9 gi|313117042|ref|YP_004038166.1| - 9.5e-63 211.9 0.0 1.3e-62 211.4 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|313117042|ref|YP_004038166.1| - 7.3e-17 61.0 0.1 1.9e-16 59.7 0.1 1.8 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) FeS_assembly_P PF01883.19 gi|313117042|ref|YP_004038166.1| - 1.5e-11 44.3 8.3 3.5e-11 43.1 4.3 2.6 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|313117042|ref|YP_004038166.1| - 1.3e-10 41.4 0.0 3.1e-10 40.2 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|313117042|ref|YP_004038166.1| - 2.1e-05 24.4 0.2 0.0053 16.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|313117042|ref|YP_004038166.1| - 5.9e-05 23.1 0.2 0.00025 21.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|313117042|ref|YP_004038166.1| - 0.00037 19.8 1.7 0.26 10.5 1.6 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.11 gi|313117042|ref|YP_004038166.1| - 0.0056 16.0 0.1 0.01 15.2 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|313117042|ref|YP_004038166.1| - 0.006 16.2 6.0 0.099 12.2 0.4 2.4 2 0 0 2 2 2 2 AAA domain MFS_1 PF07690.16 gi|313117043|ref|YP_004038167.1| - 1.1e-38 133.1 50.3 1.1e-35 123.3 34.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|313117043|ref|YP_004038167.1| - 2.6e-08 33.1 16.8 4.9e-06 25.7 15.9 2.6 1 1 1 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|313117043|ref|YP_004038167.1| - 2.9e-05 23.0 10.0 0.00023 20.1 2.9 2.2 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|313117043|ref|YP_004038167.1| - 0.035 12.5 22.1 0.099 11.0 15.1 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector GFO_IDH_MocA PF01408.22 gi|313117044|ref|YP_004038168.1| - 6.5e-21 75.4 0.0 1e-20 74.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|313117044|ref|YP_004038168.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain BPD_transp_1 PF00528.22 gi|313117045|ref|YP_004038169.1| - 2e-31 109.1 7.1 2e-31 109.1 7.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313117045|ref|YP_004038169.1| - 0.0013 18.7 1.1 0.0013 18.7 1.1 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|313117046|ref|YP_004038170.1| - 4.1e-40 137.5 7.3 4.1e-40 137.5 7.3 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|313117047|ref|YP_004038171.1| - 3.4e-64 215.4 0.0 1.1e-30 107.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|313117047|ref|YP_004038171.1| - 8.5e-36 122.3 0.6 8.6e-17 61.4 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313117047|ref|YP_004038171.1| - 1e-17 64.9 8.3 5.2e-09 36.3 0.2 4.1 2 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313117047|ref|YP_004038171.1| - 5e-17 62.1 0.2 8.3e-08 31.9 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313117047|ref|YP_004038171.1| - 5.4e-09 36.7 0.1 0.0012 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|313117047|ref|YP_004038171.1| - 3.8e-07 29.8 0.7 0.021 14.5 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.12 gi|313117047|ref|YP_004038171.1| - 5e-06 26.5 1.0 0.55 10.1 0.1 3.5 3 0 0 3 3 3 2 NACHT domain RsgA_GTPase PF03193.16 gi|313117047|ref|YP_004038171.1| - 6.3e-06 26.2 0.6 0.027 14.4 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase IstB_IS21 PF01695.17 gi|313117047|ref|YP_004038171.1| - 1e-05 25.4 1.2 0.96 9.2 0.0 3.8 4 0 0 4 4 4 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|313117047|ref|YP_004038171.1| - 1.2e-05 25.6 5.3 0.1 12.9 0.2 3.9 2 2 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|313117047|ref|YP_004038171.1| - 1.4e-05 25.2 0.1 1.1 9.6 0.0 3.9 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313117047|ref|YP_004038171.1| - 4.2e-05 23.2 0.2 0.21 11.1 0.0 3.6 4 0 0 4 4 4 1 AAA domain DUF87 PF01935.17 gi|313117047|ref|YP_004038171.1| - 6e-05 23.2 0.9 0.26 11.4 0.2 2.6 2 0 0 2 2 2 2 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|313117047|ref|YP_004038171.1| - 0.0002 21.1 0.0 0.038 13.7 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.18 gi|313117047|ref|YP_004038171.1| - 0.00066 19.5 0.1 0.19 11.4 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 gi|313117047|ref|YP_004038171.1| - 0.0012 18.3 0.2 1.2 8.5 0.0 3.4 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|313117047|ref|YP_004038171.1| - 0.0019 17.4 1.0 1.3 8.1 0.1 2.7 3 0 0 3 3 2 2 NB-ARC domain Sigma54_activat PF00158.26 gi|313117047|ref|YP_004038171.1| - 0.0026 17.5 2.1 4.2 7.0 0.0 3.6 4 0 0 4 4 4 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|313117047|ref|YP_004038171.1| - 0.0044 17.4 0.3 4.5 7.7 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.14 gi|313117047|ref|YP_004038171.1| - 0.0051 16.8 1.8 3.4 7.7 0.0 3.5 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|313117047|ref|YP_004038171.1| - 0.0066 16.6 0.1 1.5 9.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|313117047|ref|YP_004038171.1| - 0.0069 16.8 0.1 6.2 7.3 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|313117047|ref|YP_004038171.1| - 0.0078 16.3 0.3 0.24 11.4 0.2 2.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|313117047|ref|YP_004038171.1| - 0.0099 16.0 1.0 2.9 8.0 0.1 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|313117047|ref|YP_004038171.1| - 0.01 16.4 0.0 7.8 7.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|313117047|ref|YP_004038171.1| - 0.011 16.2 0.0 2.5 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|313117047|ref|YP_004038171.1| - 0.011 14.4 1.0 1.6 7.3 0.0 3.3 4 0 0 4 4 4 0 AAA domain Zeta_toxin PF06414.12 gi|313117047|ref|YP_004038171.1| - 0.012 14.9 0.4 2.5 7.3 0.1 2.7 3 0 0 3 3 3 0 Zeta toxin AAA_24 PF13479.6 gi|313117047|ref|YP_004038171.1| - 0.012 15.3 0.2 2.1 8.0 0.1 2.4 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|313117047|ref|YP_004038171.1| - 0.016 15.1 1.7 0.31 10.9 0.1 2.6 3 0 0 3 3 2 0 NTPase ATPase PF06745.13 gi|313117047|ref|YP_004038171.1| - 0.018 14.4 0.2 6.6 6.0 0.0 2.4 2 0 0 2 2 2 0 KaiC MobB PF03205.14 gi|313117047|ref|YP_004038171.1| - 0.026 14.4 0.3 2.7 7.9 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Septin PF00735.18 gi|313117047|ref|YP_004038171.1| - 0.035 13.4 0.2 1.9 7.7 0.0 2.3 2 0 0 2 2 2 0 Septin TniB PF05621.11 gi|313117047|ref|YP_004038171.1| - 0.039 13.4 0.4 5.6 6.3 0.0 3.5 4 0 0 4 4 4 0 Bacterial TniB protein AAA_15 PF13175.6 gi|313117047|ref|YP_004038171.1| - 0.041 13.6 1.1 8.8 5.9 0.1 2.9 3 0 0 3 3 3 0 AAA ATPase domain APS_kinase PF01583.20 gi|313117047|ref|YP_004038171.1| - 0.047 13.6 0.8 0.58 10.0 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|313117047|ref|YP_004038171.1| - 0.062 12.8 0.1 5.4 6.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region tRNA_lig_kinase PF08303.11 gi|313117047|ref|YP_004038171.1| - 0.071 13.2 0.0 4.4 7.4 0.0 2.4 2 0 0 2 2 2 0 tRNA ligase kinase domain TIP49 PF06068.13 gi|313117047|ref|YP_004038171.1| - 0.082 12.1 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain Methyltransf_32 PF13679.6 gi|313117047|ref|YP_004038171.1| - 0.12 12.4 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain GTP_EFTU PF00009.27 gi|313117047|ref|YP_004038171.1| - 0.14 11.7 0.1 3 7.3 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TsaE PF02367.17 gi|313117047|ref|YP_004038171.1| - 0.19 11.7 0.2 1.6 8.7 0.1 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Hpr_kinase_C PF07475.12 gi|313117047|ref|YP_004038171.1| - 0.21 11.1 0.8 16 5.0 0.1 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Roc PF08477.13 gi|313117047|ref|YP_004038171.1| - 0.25 11.6 0.3 13 6.1 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase CLP1_P PF16575.5 gi|313117047|ref|YP_004038171.1| - 0.48 10.2 2.4 16 5.2 0.2 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SBP_bac_5 PF00496.22 gi|313117048|ref|YP_004038172.1| - 5.2e-75 252.8 0.3 7e-75 252.3 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3320 PF11784.8 gi|313117048|ref|YP_004038172.1| - 0.047 13.7 0.2 7.2 6.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) IclR PF01614.18 gi|313117049|ref|YP_004038173.1| - 1.1e-30 106.1 0.0 1.6e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117049|ref|YP_004038173.1| - 9.1e-09 35.0 0.0 2.6e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313117049|ref|YP_004038173.1| - 9.4e-08 31.8 0.0 3.3e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313117049|ref|YP_004038173.1| - 8.3e-07 29.0 0.0 2e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313117049|ref|YP_004038173.1| - 4.7e-06 26.1 0.0 2e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313117049|ref|YP_004038173.1| - 9.6e-06 25.4 0.0 2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117049|ref|YP_004038173.1| - 1.3e-05 25.0 0.0 9.5e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313117049|ref|YP_004038173.1| - 4.4e-05 23.3 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313117049|ref|YP_004038173.1| - 6.8e-05 22.7 0.0 0.00027 20.8 0.0 2.1 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|313117049|ref|YP_004038173.1| - 0.009 16.2 0.0 0.024 14.8 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.23 gi|313117049|ref|YP_004038173.1| - 0.016 15.0 0.0 0.052 13.4 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_17 PF12728.7 gi|313117049|ref|YP_004038173.1| - 0.017 15.3 0.0 0.21 11.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|313117049|ref|YP_004038173.1| - 0.028 14.5 0.0 0.077 13.1 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.12 gi|313117049|ref|YP_004038173.1| - 0.059 13.2 0.1 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_40 PF14493.6 gi|313117049|ref|YP_004038173.1| - 0.077 13.5 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|313117049|ref|YP_004038173.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|313117049|ref|YP_004038173.1| - 0.19 11.6 0.0 0.6 10.0 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DAO PF01266.24 gi|313117050|ref|YP_004038174.1| - 3.1e-46 158.6 0.1 3.4e-46 158.4 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313117050|ref|YP_004038174.1| - 0.0035 16.1 0.0 0.14 10.8 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|313117050|ref|YP_004038174.1| - 0.02 14.1 0.3 0.8 8.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|313117050|ref|YP_004038174.1| - 0.029 13.6 0.5 0.39 9.9 0.5 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|313117050|ref|YP_004038174.1| - 0.47 10.4 5.1 0.63 10.0 1.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|313117050|ref|YP_004038174.1| - 2.7 8.3 4.3 2.1 8.6 0.2 2.9 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain TPP_enzyme_M PF00205.22 gi|313117051|ref|YP_004038175.1| - 1.5e-34 118.6 0.6 2.9e-34 117.8 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|313117051|ref|YP_004038175.1| - 1.5e-32 112.5 1.4 2.7e-32 111.7 0.9 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|313117051|ref|YP_004038175.1| - 2.2e-29 102.3 0.0 6.7e-28 97.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO_dh PF02552.16 gi|313117051|ref|YP_004038175.1| - 0.25 11.1 0.0 0.45 10.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Epimerase PF01370.21 gi|313117052|ref|YP_004038176.1| - 1.6e-41 142.4 0.3 2e-41 142.0 0.3 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313117052|ref|YP_004038176.1| - 1.7e-40 139.4 0.2 5.7e-39 134.4 0.2 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|313117052|ref|YP_004038176.1| - 9.9e-22 77.2 0.0 1.3e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|313117052|ref|YP_004038176.1| - 5.3e-16 58.5 1.4 7.1e-16 58.1 1.4 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|313117052|ref|YP_004038176.1| - 1.9e-12 47.0 0.0 9.1e-11 41.4 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|313117052|ref|YP_004038176.1| - 1.6e-10 41.1 0.2 2.6e-10 40.5 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|313117052|ref|YP_004038176.1| - 3.1e-08 33.1 1.1 1.1e-05 24.8 1.1 2.3 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|313117052|ref|YP_004038176.1| - 2.1e-07 31.0 0.2 5.2e-07 29.7 0.2 1.7 1 0 0 1 1 1 1 KR domain adh_short PF00106.25 gi|313117052|ref|YP_004038176.1| - 3.3e-07 30.0 0.6 3.3e-07 30.0 0.6 1.7 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|313117052|ref|YP_004038176.1| - 8.3e-05 22.3 0.3 0.00017 21.3 0.3 1.5 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|313117052|ref|YP_004038176.1| - 0.00017 21.2 0.4 0.0003 20.4 0.4 1.5 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|313117052|ref|YP_004038176.1| - 0.054 12.9 0.1 0.1 11.9 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CCB2_CCB4 PF11152.8 gi|313117052|ref|YP_004038176.1| - 0.18 11.1 0.1 0.31 10.3 0.1 1.3 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 HD PF01966.22 gi|313117053|ref|YP_004038177.1| - 7.1e-10 39.2 0.3 1.2e-09 38.5 0.3 1.3 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|313117053|ref|YP_004038177.1| - 0.015 15.4 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 HD domain HD_2 PF12917.7 gi|313117053|ref|YP_004038177.1| - 0.16 11.7 0.1 0.38 10.5 0.1 1.6 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme EthD PF07110.11 gi|313117054|ref|YP_004038178.1| - 6.5e-24 84.9 11.0 2e-12 48.1 0.7 3.9 2 2 0 2 2 2 2 EthD domain MmlI PF09448.10 gi|313117054|ref|YP_004038178.1| - 1.8e-23 83.2 5.5 1.8e-12 47.7 0.6 3.8 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase DUF4543 PF15076.6 gi|313117054|ref|YP_004038178.1| - 0.0097 16.0 0.6 0.42 10.8 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4543) FOXP-CC PF16159.5 gi|313117054|ref|YP_004038178.1| - 0.022 15.4 0.3 9.4 6.9 0.1 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain ABM PF03992.16 gi|313117054|ref|YP_004038178.1| - 0.049 13.8 0.4 13 6.0 0.1 2.9 2 2 1 3 3 3 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.24 gi|313117055|ref|YP_004038179.1| - 1.9e-29 102.8 0.1 2.8e-29 102.3 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|313117055|ref|YP_004038179.1| - 0.00034 21.3 0.0 0.00066 20.3 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Bac_luciferase PF00296.20 gi|313117056|ref|YP_004038180.1| - 1.3e-53 182.5 0.0 1.5e-53 182.2 0.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Trehalase_Ca-bi PF07492.11 gi|313117056|ref|YP_004038180.1| - 0.11 12.2 0.1 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain Transket_pyr PF02779.24 gi|313117057|ref|YP_004038181.1| - 2.8e-48 164.0 0.0 4.1e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|313117057|ref|YP_004038181.1| - 1.3e-34 118.7 0.0 2.3e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|313117057|ref|YP_004038181.1| - 0.055 13.8 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|313117058|ref|YP_004038182.1| - 1.1e-82 277.4 0.0 1.4e-82 277.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|313117058|ref|YP_004038182.1| - 8.9e-07 28.4 0.0 1.5e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|313117058|ref|YP_004038182.1| - 4.1e-05 23.4 0.3 0.00023 21.0 0.3 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|313117058|ref|YP_004038182.1| - 0.00014 20.9 0.1 0.00025 20.1 0.1 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain SNF PF00209.18 gi|313117059|ref|YP_004038183.1| - 3.9e-49 167.7 27.4 4.9e-25 88.2 9.0 2.3 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF2919 PF11143.8 gi|313117059|ref|YP_004038183.1| - 3 8.2 6.8 0.66 10.3 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2919) Aminotran_1_2 PF00155.21 gi|313117060|ref|YP_004038184.1| - 8.7e-59 199.5 0.0 9.8e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|313117060|ref|YP_004038184.1| - 1.8e-13 50.5 0.0 2.7e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|313117060|ref|YP_004038184.1| - 7.6e-08 31.7 0.0 1.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|313117060|ref|YP_004038184.1| - 5.9e-06 25.8 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|313117060|ref|YP_004038184.1| - 0.00036 19.2 0.0 0.00052 18.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HTH_24 PF13412.6 gi|313117061|ref|YP_004038185.1| - 2e-05 24.1 0.0 2.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313117061|ref|YP_004038185.1| - 9.9e-05 22.2 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313117061|ref|YP_004038185.1| - 0.0019 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|313117061|ref|YP_004038185.1| - 0.0027 18.2 0.1 0.004 17.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|313117061|ref|YP_004038185.1| - 0.0066 16.3 0.3 0.013 15.3 0.3 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|313117061|ref|YP_004038185.1| - 0.0091 15.9 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_54 PF18607.1 gi|313117061|ref|YP_004038185.1| - 0.057 13.5 0.0 0.071 13.2 0.0 1.1 1 0 0 1 1 1 0 ParA helix turn helix domain GntR PF00392.21 gi|313117061|ref|YP_004038185.1| - 0.067 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.12 gi|313117061|ref|YP_004038185.1| - 0.068 13.3 0.0 0.077 13.2 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|313117061|ref|YP_004038185.1| - 0.07 13.0 0.1 0.097 12.6 0.1 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Aldedh PF00171.22 gi|313117062|ref|YP_004038186.1| - 2.3e-138 461.6 0.0 2.6e-138 461.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.18 gi|313117063|ref|YP_004038187.1| - 4.5e-33 113.8 0.1 9.8e-33 112.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117063|ref|YP_004038187.1| - 1.4e-08 34.4 0.2 3.6e-08 33.1 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313117063|ref|YP_004038187.1| - 2.8e-08 33.2 0.5 1.5e-07 30.9 0.4 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117063|ref|YP_004038187.1| - 1.3e-06 28.1 0.2 3.1e-06 27.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|313117063|ref|YP_004038187.1| - 7e-06 25.9 0.5 4.1e-05 23.4 0.4 2.3 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|313117063|ref|YP_004038187.1| - 1.2e-05 25.3 0.2 1.2e-05 25.3 0.2 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313117063|ref|YP_004038187.1| - 6.8e-05 22.7 0.0 0.00025 20.9 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313117063|ref|YP_004038187.1| - 9.8e-05 22.2 0.1 0.00021 21.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|313117063|ref|YP_004038187.1| - 0.0032 17.2 0.1 0.0078 15.9 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313117063|ref|YP_004038187.1| - 0.012 15.4 0.6 0.067 13.0 0.2 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|313117063|ref|YP_004038187.1| - 0.051 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|313117063|ref|YP_004038187.1| - 0.054 13.6 0.3 0.054 13.6 0.3 2.4 3 0 0 3 3 3 0 DprA winged helix domain HTH_32 PF13565.6 gi|313117063|ref|YP_004038187.1| - 0.06 14.0 1.9 0.077 13.6 0.2 2.1 2 1 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.12 gi|313117063|ref|YP_004038187.1| - 0.069 13.0 0.0 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain F420_oxidored PF03807.17 gi|313117064|ref|YP_004038188.1| - 2.5e-17 63.3 0.5 5.2e-17 62.2 0.3 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|313117064|ref|YP_004038188.1| - 0.00027 21.0 0.1 0.00072 19.6 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|313117064|ref|YP_004038188.1| - 0.00067 19.3 0.0 0.00099 18.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|313117064|ref|YP_004038188.1| - 0.00074 18.6 0.0 0.00091 18.3 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.24 gi|313117064|ref|YP_004038188.1| - 0.0056 17.1 0.1 0.01 16.2 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|313117064|ref|YP_004038188.1| - 0.051 13.6 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase KR PF08659.10 gi|313117064|ref|YP_004038188.1| - 0.11 12.3 0.1 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 KR domain zf-FCS PF06467.14 gi|313117065|ref|YP_004038189.1| - 0.13 12.2 7.2 0.32 11.0 7.2 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|313117065|ref|YP_004038189.1| - 3 8.3 9.3 24 5.4 9.3 2.3 1 1 0 1 1 1 0 Archaeal TRASH domain IMPDH PF00478.25 gi|313117067|ref|YP_004038191.1| - 1.4e-120 402.5 3.4 1.6e-120 402.2 3.4 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|313117067|ref|YP_004038191.1| - 4.3e-08 32.9 0.7 5.4e-05 22.8 0.1 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.18 gi|313117067|ref|YP_004038191.1| - 1.6e-06 27.4 11.2 4.9e-06 25.8 11.2 1.8 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|313117067|ref|YP_004038191.1| - 9.3e-05 22.0 12.5 0.016 14.6 8.5 2.5 1 1 2 3 3 3 2 Nitronate monooxygenase Glu_synthase PF01645.17 gi|313117067|ref|YP_004038191.1| - 0.0006 19.0 4.3 0.0019 17.4 4.0 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase TMP-TENI PF02581.17 gi|313117067|ref|YP_004038191.1| - 0.0048 16.2 2.5 0.017 14.5 1.9 2.0 1 1 1 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|313117067|ref|YP_004038191.1| - 0.0059 15.9 1.0 0.012 14.8 1.0 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF1269 PF06897.12 gi|313117067|ref|YP_004038191.1| - 0.05 13.9 0.5 0.22 11.9 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Dus PF01207.17 gi|313117067|ref|YP_004038191.1| - 0.073 12.2 0.2 0.19 10.8 0.1 1.5 1 1 1 2 2 2 0 Dihydrouridine synthase (Dus) Aldolase PF01081.19 gi|313117067|ref|YP_004038191.1| - 0.089 12.2 3.1 0.12 11.8 0.7 2.0 1 1 1 2 2 2 0 KDPG and KHG aldolase ThiG PF05690.14 gi|313117067|ref|YP_004038191.1| - 0.42 9.9 6.0 0.067 12.5 1.0 1.9 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DAO PF01266.24 gi|313117068|ref|YP_004038192.1| - 2.8e-66 224.5 0.1 3.5e-66 224.2 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|313117068|ref|YP_004038192.1| - 3.9e-08 32.9 0.0 0.0069 15.6 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313117068|ref|YP_004038192.1| - 7.6e-08 32.0 0.7 0.00034 20.0 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313117068|ref|YP_004038192.1| - 3.3e-07 29.3 0.2 0.0011 17.8 0.0 2.5 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|313117068|ref|YP_004038192.1| - 9.4e-06 25.7 0.7 0.0025 17.8 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|313117068|ref|YP_004038192.1| - 3.7e-05 23.9 0.0 0.00011 22.4 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Mqo PF06039.15 gi|313117068|ref|YP_004038192.1| - 4.1e-05 22.3 0.0 0.16 10.5 0.0 2.2 2 0 0 2 2 2 2 Malate:quinone oxidoreductase (Mqo) Pyr_redox PF00070.27 gi|313117068|ref|YP_004038192.1| - 0.0004 20.9 0.1 0.29 11.7 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|313117068|ref|YP_004038192.1| - 0.00042 19.6 0.0 0.0011 18.2 0.0 1.7 1 0 0 1 1 1 1 Thi4 family K_oxygenase PF13434.6 gi|313117068|ref|YP_004038192.1| - 0.0019 17.4 0.3 0.082 12.0 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|313117068|ref|YP_004038192.1| - 0.0043 17.5 0.0 0.012 16.0 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|313117068|ref|YP_004038192.1| - 0.0067 15.5 0.5 0.4 9.7 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|313117068|ref|YP_004038192.1| - 0.0073 15.4 0.7 0.027 13.6 0.7 1.8 1 1 0 1 1 1 1 FAD binding domain Acyl-CoA_dh_1 PF00441.24 gi|313117069|ref|YP_004038193.1| - 1.4e-30 106.5 1.5 2.1e-30 105.9 1.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313117069|ref|YP_004038193.1| - 3.6e-26 92.0 0.0 8.5e-26 90.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313117069|ref|YP_004038193.1| - 2e-24 85.6 0.0 3.7e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313117069|ref|YP_004038193.1| - 5e-11 43.0 1.0 7.6e-11 42.4 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AcetylCoA_hyd_C PF13336.6 gi|313117070|ref|YP_004038194.1| - 2.5e-39 134.7 0.0 3.5e-39 134.2 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|313117070|ref|YP_004038194.1| - 3.3e-10 40.3 0.0 7e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.12 gi|313117070|ref|YP_004038194.1| - 8.5e-05 21.6 0.3 0.0002 20.4 0.3 1.6 1 1 0 1 1 1 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.23 gi|313117070|ref|YP_004038194.1| - 0.00051 19.5 0.1 0.0012 18.3 0.0 1.6 2 0 0 2 2 2 1 Coenzyme A transferase DUF2204 PF09970.9 gi|313117070|ref|YP_004038194.1| - 0.048 13.3 0.1 0.26 10.9 0.1 2.0 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) DctM PF06808.12 gi|313117072|ref|YP_004038196.1| - 7e-53 179.9 46.6 7e-53 179.9 46.6 1.9 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component NMT1_3 PF16868.5 gi|313117073|ref|YP_004038197.1| - 5e-21 75.4 0.3 6.5e-21 75.0 0.3 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|313117073|ref|YP_004038197.1| - 0.0026 17.8 0.0 0.0079 16.2 0.0 1.7 1 1 1 2 2 2 1 NMT1/THI5 like UCR_Fe-S_N PF10399.9 gi|313117073|ref|YP_004038197.1| - 0.28 10.6 0.1 0.28 10.6 0.1 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IclR PF01614.18 gi|313117074|ref|YP_004038198.1| - 1.3e-32 112.3 0.0 3.8e-32 110.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117074|ref|YP_004038198.1| - 8.6e-11 41.5 0.1 3e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313117074|ref|YP_004038198.1| - 9.8e-08 31.4 0.0 2.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117074|ref|YP_004038198.1| - 4.1e-07 29.7 0.1 9.7e-07 28.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313117074|ref|YP_004038198.1| - 9.7e-07 28.8 0.0 2.8e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313117074|ref|YP_004038198.1| - 0.00025 20.9 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|313117074|ref|YP_004038198.1| - 0.00036 20.4 0.0 0.00086 19.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|313117074|ref|YP_004038198.1| - 0.00066 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117074|ref|YP_004038198.1| - 0.0018 18.1 0.1 0.0055 16.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|313117074|ref|YP_004038198.1| - 0.0039 16.9 0.1 0.016 15.0 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|313117074|ref|YP_004038198.1| - 0.0093 16.1 0.0 0.056 13.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|313117074|ref|YP_004038198.1| - 0.015 15.0 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|313117074|ref|YP_004038198.1| - 0.068 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|313117074|ref|YP_004038198.1| - 0.086 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family EF1_GNE PF00736.19 gi|313117074|ref|YP_004038198.1| - 0.11 12.6 0.0 0.41 10.8 0.0 2.0 1 1 1 2 2 2 0 EF-1 guanine nucleotide exchange domain HTH_29 PF13551.6 gi|313117074|ref|YP_004038198.1| - 0.13 12.3 0.0 0.37 10.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.6 gi|313117074|ref|YP_004038198.1| - 0.14 12.6 0.1 1.1 9.7 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Syntaxin PF00804.25 gi|313117074|ref|YP_004038198.1| - 0.19 11.4 0.2 0.42 10.2 0.2 1.5 1 0 0 1 1 1 0 Syntaxin HTH_20 PF12840.7 gi|313117075|ref|YP_004038199.1| - 1.9e-12 47.0 0.1 3.8e-12 46.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|313117075|ref|YP_004038199.1| - 2.2e-05 24.2 0.0 4.7e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313117075|ref|YP_004038199.1| - 0.00084 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117075|ref|YP_004038199.1| - 0.03 14.2 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family UPF0444 PF15475.6 gi|313117075|ref|YP_004038199.1| - 0.063 13.5 0.2 0.063 13.5 0.2 1.9 2 0 0 2 2 2 0 Transmembrane protein C12orf23, UPF0444 MarR PF01047.22 gi|313117077|ref|YP_004038201.1| - 5.3e-08 32.7 0.0 8.2e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|313117077|ref|YP_004038201.1| - 1.7e-07 31.0 0.2 3.5e-07 30.0 0.2 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117077|ref|YP_004038201.1| - 7.4e-07 29.0 0.3 1.2e-06 28.3 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313117077|ref|YP_004038201.1| - 3e-06 26.9 0.2 4.9e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Trp_oprn_chp PF09534.10 gi|313117077|ref|YP_004038201.1| - 2e-05 24.5 1.0 4e-05 23.5 1.1 1.5 1 1 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HTH_24 PF13412.6 gi|313117077|ref|YP_004038201.1| - 2.9e-05 23.5 0.0 5.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313117077|ref|YP_004038201.1| - 0.0004 20.4 0.2 0.00069 19.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313117077|ref|YP_004038201.1| - 0.0012 19.3 0.2 0.0032 17.9 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|313117077|ref|YP_004038201.1| - 0.0014 18.8 0.1 0.0023 18.1 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|313117077|ref|YP_004038201.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|313117077|ref|YP_004038201.1| - 0.0029 17.2 0.3 0.0049 16.5 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|313117077|ref|YP_004038201.1| - 0.0036 17.0 0.5 0.0074 16.0 0.1 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313117077|ref|YP_004038201.1| - 0.0078 16.2 0.2 0.013 15.5 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain SfLAP PF11139.8 gi|313117077|ref|YP_004038201.1| - 0.0095 15.4 1.1 0.016 14.6 1.1 1.3 1 0 0 1 1 1 1 Sap, sulfolipid-1-addressing protein HTH_11 PF08279.12 gi|313117077|ref|YP_004038201.1| - 0.011 15.6 0.2 0.028 14.4 0.1 1.6 2 0 0 2 2 2 0 HTH domain RepL PF05732.11 gi|313117077|ref|YP_004038201.1| - 0.011 15.1 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|313117077|ref|YP_004038201.1| - 0.026 14.4 0.1 0.054 13.3 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Trp_repressor PF01371.19 gi|313117077|ref|YP_004038201.1| - 0.043 13.9 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein DUF2809 PF10990.8 gi|313117077|ref|YP_004038201.1| - 0.069 13.8 0.2 0.11 13.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) Penicillinase_R PF03965.16 gi|313117077|ref|YP_004038201.1| - 0.075 13.4 0.3 0.19 12.1 0.3 1.7 1 1 0 1 1 1 0 Penicillinase repressor DDE_Tnp_1_assoc PF13808.6 gi|313117077|ref|YP_004038201.1| - 0.16 12.0 2.5 4.1 7.5 0.0 2.9 3 1 0 3 3 3 0 DDE_Tnp_1-associated 3HCDH_N PF02737.18 gi|313117079|ref|YP_004038203.1| - 3.2e-62 209.6 0.0 5.6e-62 208.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|313117079|ref|YP_004038203.1| - 1.2e-54 185.2 0.0 1.8e-54 184.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|313117079|ref|YP_004038203.1| - 9.4e-45 151.2 0.4 8.7e-22 77.6 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|313117079|ref|YP_004038203.1| - 6.7e-31 108.0 0.0 5e-27 95.3 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|313117079|ref|YP_004038203.1| - 0.0061 16.8 0.1 0.017 15.3 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|313117079|ref|YP_004038203.1| - 0.15 11.3 0.3 0.24 10.7 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SCP2 PF02036.17 gi|313117080|ref|YP_004038204.1| - 1.1e-07 32.3 0.0 1.2e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family CBM_10 PF02013.16 gi|313117080|ref|YP_004038204.1| - 0.86 10.1 5.2 4.2 7.9 0.2 2.4 2 0 0 2 2 2 0 Cellulose or protein binding domain ADH_N PF08240.12 gi|313117081|ref|YP_004038205.1| - 1.6e-25 89.1 0.1 3.5e-25 88.0 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313117081|ref|YP_004038205.1| - 1.2e-24 86.7 0.0 1.8e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|313117081|ref|YP_004038205.1| - 9.5e-05 23.5 0.0 0.00022 22.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|313117081|ref|YP_004038205.1| - 0.0001 21.7 0.6 0.00015 21.1 0.6 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|313117081|ref|YP_004038205.1| - 0.0011 18.5 0.5 0.0017 17.9 0.5 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|313117081|ref|YP_004038205.1| - 0.02 15.1 0.3 0.033 14.4 0.3 1.3 1 0 0 1 1 1 0 TrkA-N domain Urocanase PF01175.18 gi|313117081|ref|YP_004038205.1| - 0.054 13.1 0.2 0.083 12.5 0.2 1.2 1 0 0 1 1 1 0 Urocanase Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|313117081|ref|YP_004038205.1| - 0.091 12.1 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|313117081|ref|YP_004038205.1| - 0.13 13.0 0.1 0.24 12.1 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain SIS_2 PF13580.6 gi|313117081|ref|YP_004038205.1| - 0.14 12.2 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 SIS domain Aldedh PF00171.22 gi|313117082|ref|YP_004038206.1| - 6.3e-158 526.1 0.0 7.2e-158 525.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|313117082|ref|YP_004038206.1| - 0.00014 21.4 0.0 0.0051 16.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) Invasin_D3 PF09134.10 gi|313117082|ref|YP_004038206.1| - 0.0028 17.9 1.8 0.0067 16.7 1.8 1.6 1 0 0 1 1 1 1 Invasin, domain 3 DUF5063 PF16702.5 gi|313117082|ref|YP_004038206.1| - 0.12 12.7 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) DUF349 PF03993.12 gi|313117082|ref|YP_004038206.1| - 0.14 12.5 1.8 0.27 11.5 1.8 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) MFS_1 PF07690.16 gi|313117083|ref|YP_004038207.1| - 7.5e-38 130.3 63.1 4.6e-30 104.7 38.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|313117083|ref|YP_004038207.1| - 8.2e-06 24.9 7.9 8.2e-06 24.9 7.9 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Alkyl_sulf_dimr PF14863.6 gi|313117084|ref|YP_004038208.1| - 1.8e-25 90.0 0.1 3.2e-25 89.2 0.1 1.4 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|313117084|ref|YP_004038208.1| - 1.2e-21 77.6 2.4 1.2e-21 77.6 2.4 1.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|313117084|ref|YP_004038208.1| - 6.5e-06 25.8 0.1 1.6e-05 24.6 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3708 PF12501.8 gi|313117084|ref|YP_004038208.1| - 0.16 11.8 0.1 0.68 9.7 0.0 1.9 2 0 0 2 2 2 0 Phosphate ATP-binding cassette transporter HTH_10 PF04967.12 gi|313117085|ref|YP_004038209.1| - 5e-16 58.2 0.0 7.7e-16 57.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|313117085|ref|YP_004038209.1| - 1.2e-05 24.7 0.3 2e-05 24.0 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_4 PF13613.6 gi|313117085|ref|YP_004038209.1| - 0.021 14.5 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4_2 PF08281.12 gi|313117085|ref|YP_004038209.1| - 0.026 14.2 0.5 0.46 10.2 0.2 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 SgrR_N PF12793.7 gi|313117085|ref|YP_004038209.1| - 0.032 14.4 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term GtrA PF04138.14 gi|313117086|ref|YP_004038210.1| - 3e-20 72.6 10.7 3.6e-20 72.3 10.7 1.1 1 0 0 1 1 1 1 GtrA-like protein PMT_2 PF13231.6 gi|313117087|ref|YP_004038211.1| - 7e-12 45.9 8.4 2.6e-11 44.0 8.4 1.9 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|313117087|ref|YP_004038211.1| - 1.5e-06 28.0 8.5 2.7e-06 27.2 8.5 1.3 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_18 PF00704.28 gi|313117088|ref|YP_004038212.1| - 8.6e-83 278.6 8.8 1.4e-82 278.0 8.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|313117088|ref|YP_004038212.1| - 6.5e-16 57.9 3.6 1.9e-15 56.5 3.6 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313117088|ref|YP_004038212.1| - 2e-05 24.9 1.9 8.5e-05 22.9 1.9 2.2 1 0 0 1 1 1 1 Carbohydrate binding domain ig PF00047.25 gi|313117088|ref|YP_004038212.1| - 0.0022 18.2 0.0 0.028 14.6 0.1 2.4 2 0 0 2 2 2 1 Immunoglobulin domain I-set PF07679.16 gi|313117088|ref|YP_004038212.1| - 0.042 13.9 0.0 0.093 12.8 0.0 1.6 1 0 0 1 1 1 0 Immunoglobulin I-set domain REJ PF02010.15 gi|313117088|ref|YP_004038212.1| - 0.059 12.1 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 REJ domain Glyco_hydro_18 PF00704.28 gi|313117089|ref|YP_004038213.1| - 1.3e-70 238.7 0.9 1.3e-70 238.7 0.9 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|313117089|ref|YP_004038213.1| - 1.5e-19 69.6 4.6 4.4e-19 68.1 4.6 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313117089|ref|YP_004038213.1| - 4.9e-06 26.8 1.8 2.5e-05 24.6 1.8 2.3 1 0 0 1 1 1 1 Carbohydrate binding domain Ig_3 PF13927.6 gi|313117089|ref|YP_004038213.1| - 3.5 8.3 5.1 0.73 10.5 0.3 2.4 3 0 0 3 3 3 0 Immunoglobulin domain PKD PF00801.20 gi|313117090|ref|YP_004038214.1| - 3.9e-15 55.4 2.3 8.9e-15 54.3 2.3 1.6 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313117090|ref|YP_004038214.1| - 0.00024 21.5 0.9 0.00085 19.8 0.9 2.0 1 0 0 1 1 1 1 Carbohydrate binding domain DUF5011 PF16403.5 gi|313117090|ref|YP_004038214.1| - 0.015 15.4 1.3 0.039 14.1 1.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5011) PKD PF00801.20 gi|313117091|ref|YP_004038215.1| - 2.6e-11 43.2 4.3 7.4e-11 41.7 4.3 1.8 1 0 0 1 1 1 1 PKD domain IclR PF01614.18 gi|313117092|ref|YP_004038216.1| - 4.1e-21 75.1 0.1 6.5e-20 71.3 0.0 2.4 3 0 0 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117092|ref|YP_004038216.1| - 7.2e-12 44.9 0.5 3.1e-11 42.9 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313117092|ref|YP_004038216.1| - 6.1e-07 29.2 0.0 1.5e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313117092|ref|YP_004038216.1| - 8.4e-06 25.8 0.1 2.7e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313117092|ref|YP_004038216.1| - 5.9e-05 22.9 0.0 0.00019 21.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|313117092|ref|YP_004038216.1| - 0.00016 21.5 0.0 0.00048 20.0 0.0 1.8 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117092|ref|YP_004038216.1| - 0.0016 18.3 0.0 0.0044 16.9 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|313117092|ref|YP_004038216.1| - 0.0096 15.5 0.0 0.022 14.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|313117092|ref|YP_004038216.1| - 0.035 14.4 0.0 0.087 13.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator His_Phos_1 PF00300.22 gi|313117093|ref|YP_004038217.1| - 1.2e-31 109.9 0.1 1.5e-31 109.6 0.1 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) ComA PF02679.15 gi|313117094|ref|YP_004038218.1| - 3e-83 279.0 0.0 3.4e-83 278.8 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) MmgE_PrpD PF03972.14 gi|313117095|ref|YP_004038219.1| - 4.4e-128 427.5 0.6 5.5e-128 427.2 0.6 1.0 1 0 0 1 1 1 1 MmgE/PrpD family MMS19_N PF14500.6 gi|313117095|ref|YP_004038219.1| - 0.022 14.4 0.0 0.054 13.1 0.0 1.6 1 1 0 1 1 1 0 Dos2-interacting transcription regulator of RNA-Pol-II Rib PF08428.10 gi|313117095|ref|YP_004038219.1| - 0.065 13.2 0.4 1.1 9.3 0.1 2.5 2 0 0 2 2 2 0 Rib/alpha-like repeat PheRS_DBD2 PF18554.1 gi|313117095|ref|YP_004038219.1| - 0.27 11.3 1.6 0.37 10.8 0.1 2.0 2 0 0 2 2 2 0 PheRS DNA binding domain 2 Peptidase_M17_N PF02789.17 gi|313117095|ref|YP_004038219.1| - 1 9.2 3.1 2 8.3 1.6 2.2 2 0 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain Peripla_BP_2 PF01497.18 gi|313117096|ref|YP_004038220.1| - 2.7e-14 53.3 0.0 4.6e-14 52.5 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313117096|ref|YP_004038220.1| - 0.0012 18.6 0.6 0.0024 17.6 0.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|313117096|ref|YP_004038220.1| - 1 9.3 6.6 1.7 8.6 6.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) CMD PF02627.20 gi|313117097|ref|YP_004038221.1| - 3.6e-12 46.2 0.4 2.3e-10 40.4 0.1 2.2 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family DDE_Tnp_1 PF01609.21 gi|313117101|ref|YP_004038225.1| - 2.9e-08 33.6 0.0 4.4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|313117101|ref|YP_004038225.1| - 0.0037 15.6 0.3 0.016 13.5 0.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain group 1 DUF772 PF05598.11 gi|313117101|ref|YP_004038225.1| - 0.04 13.9 0.0 0.15 12.1 0.0 2.0 1 1 0 1 1 1 0 Transposase domain (DUF772) RDD PF06271.12 gi|313117102|ref|YP_004038226.1| - 0.027 14.7 3.3 0.032 14.4 3.3 1.0 1 0 0 1 1 1 0 RDD family TadE PF07811.12 gi|313117102|ref|YP_004038226.1| - 0.049 13.9 2.3 0.049 13.9 2.3 1.9 2 0 0 2 2 2 0 TadE-like protein YrhC PF14143.6 gi|313117102|ref|YP_004038226.1| - 0.098 12.8 2.1 0.11 12.6 2.1 1.1 1 0 0 1 1 1 0 YrhC-like protein FixQ PF05545.11 gi|313117102|ref|YP_004038226.1| - 6.3 6.8 6.9 2.2 8.3 1.4 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ H_kinase_N PF12282.8 gi|313117104|ref|YP_004038228.1| - 0.051 13.5 0.0 0.059 13.3 0.0 1.1 1 0 0 1 1 1 0 Signal transduction histidine kinase UvrD-helicase PF00580.21 gi|313117106|ref|YP_004038230.1| - 2.4e-47 162.0 2.6 2.4e-47 162.0 2.6 2.8 2 2 0 2 2 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|313117106|ref|YP_004038230.1| - 1.2e-27 97.0 0.0 1.2e-26 93.8 0.0 2.5 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|313117106|ref|YP_004038230.1| - 4.7e-14 52.5 0.0 5.2e-10 39.2 0.0 5.0 2 2 2 4 4 4 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|313117106|ref|YP_004038230.1| - 1.9e-07 31.0 0.0 7.3e-05 22.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain UvrD_C_2 PF13538.6 gi|313117106|ref|YP_004038230.1| - 2e-07 30.7 0.2 0.00032 20.5 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain CAMSAP_CC1 PF17095.5 gi|313117106|ref|YP_004038230.1| - 0.021 14.6 0.0 0.15 11.9 0.0 2.4 2 0 0 2 2 2 0 Spectrin-binding region of Ca2+-Calmodulin Viral_helicase1 PF01443.18 gi|313117106|ref|YP_004038230.1| - 0.026 14.3 0.1 14 5.3 0.0 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase Clusterin PF01093.17 gi|313117106|ref|YP_004038230.1| - 0.75 8.8 10.9 0.042 12.9 0.6 3.0 3 0 0 3 3 3 0 Clusterin Spectrin PF00435.21 gi|313117106|ref|YP_004038230.1| - 2.4 8.7 24.2 2.8 8.5 4.5 5.3 3 2 2 5 5 4 0 Spectrin repeat Peripla_BP_2 PF01497.18 gi|313117106|ref|YP_004038230.1| - 4.8 6.7 6.3 1.2 8.6 0.2 3.0 4 0 0 4 4 4 0 Periplasmic binding protein PilJ PF13675.6 gi|313117106|ref|YP_004038230.1| - 6.5 6.8 6.7 5.7 7.0 0.7 3.7 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4164 PF13747.6 gi|313117106|ref|YP_004038230.1| - 9.5 6.6 16.8 1.7 9.0 2.0 5.2 4 1 1 5 5 4 0 Domain of unknown function (DUF4164) MSA-2c PF12238.8 gi|313117107|ref|YP_004038231.1| - 0.31 11.0 4.0 0.46 10.5 4.0 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c bPH_2 PF03703.14 gi|313117108|ref|YP_004038232.1| - 7.7e-10 38.8 0.9 1.2e-09 38.2 0.9 1.4 1 0 0 1 1 1 1 Bacterial PH domain PalH PF08733.10 gi|313117108|ref|YP_004038232.1| - 0.022 13.8 0.1 0.029 13.4 0.1 1.1 1 0 0 1 1 1 0 PalH/RIM21 S1FA PF04689.13 gi|313117108|ref|YP_004038232.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA binding protein S1FA zf-dskA_traR PF01258.17 gi|313117109|ref|YP_004038233.1| - 0.037 14.0 3.6 0.47 10.4 0.8 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2116 PF09889.9 gi|313117109|ref|YP_004038233.1| - 0.17 11.9 5.2 0.11 12.4 1.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|313117109|ref|YP_004038233.1| - 0.56 10.3 5.5 9.8 6.3 1.0 2.5 2 1 0 2 2 2 0 Double zinc ribbon Helicase_C_2 PF13307.6 gi|313117110|ref|YP_004038234.1| - 9.2e-29 100.8 0.0 1.8e-28 99.8 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|313117110|ref|YP_004038234.1| - 4.8e-11 42.6 0.0 4.4e-10 39.5 0.0 2.1 2 0 0 2 2 2 1 DEAD_2 PhoH PF02562.16 gi|313117110|ref|YP_004038234.1| - 0.017 14.6 0.1 0.037 13.5 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|313117110|ref|YP_004038234.1| - 0.022 14.8 0.0 0.077 13.0 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA PF00004.29 gi|313117111|ref|YP_004038235.1| - 8.9e-31 107.0 0.0 1.6e-30 106.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|313117111|ref|YP_004038235.1| - 1.7e-08 34.1 0.1 4.4e-08 32.8 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|313117111|ref|YP_004038235.1| - 2.5e-06 27.6 0.0 5.6e-06 26.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|313117111|ref|YP_004038235.1| - 7.9e-05 22.8 0.0 0.0002 21.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|313117111|ref|YP_004038235.1| - 0.00012 22.5 1.1 0.00054 20.4 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain TIP49 PF06068.13 gi|313117111|ref|YP_004038235.1| - 0.00044 19.6 0.0 0.0028 16.9 0.0 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain DUF2075 PF09848.9 gi|313117111|ref|YP_004038235.1| - 0.0011 18.3 0.2 0.14 11.3 0.0 2.4 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|313117111|ref|YP_004038235.1| - 0.0014 18.8 0.0 0.0025 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|313117111|ref|YP_004038235.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|313117111|ref|YP_004038235.1| - 0.0015 18.8 0.0 0.058 13.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|313117111|ref|YP_004038235.1| - 0.0087 15.8 0.0 0.038 13.7 0.0 1.9 1 1 1 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|313117111|ref|YP_004038235.1| - 0.014 14.6 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|313117111|ref|YP_004038235.1| - 0.019 14.3 0.0 0.04 13.3 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|313117111|ref|YP_004038235.1| - 0.023 13.8 0.0 0.047 12.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|313117111|ref|YP_004038235.1| - 0.025 14.4 2.6 0.042 13.6 0.0 2.3 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|313117111|ref|YP_004038235.1| - 0.028 14.9 0.8 0.72 10.3 0.1 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|313117111|ref|YP_004038235.1| - 0.029 14.9 0.1 0.083 13.4 0.0 1.7 2 0 0 2 2 1 0 ABC transporter AAA_14 PF13173.6 gi|313117111|ref|YP_004038235.1| - 0.04 14.0 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|313117111|ref|YP_004038235.1| - 0.042 13.8 0.0 0.097 12.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|313117111|ref|YP_004038235.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|313117111|ref|YP_004038235.1| - 0.058 13.6 0.0 4.8 7.4 0.0 2.6 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|313117111|ref|YP_004038235.1| - 0.059 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|313117111|ref|YP_004038235.1| - 0.065 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 gi|313117111|ref|YP_004038235.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain SKI PF01202.22 gi|313117111|ref|YP_004038235.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase AAA_7 PF12775.7 gi|313117111|ref|YP_004038235.1| - 0.17 11.4 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ADP_ribosyl_GH PF03747.14 gi|313117112|ref|YP_004038236.1| - 2.2e-66 224.6 2.3 3.7e-66 223.8 2.3 1.3 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase SurE PF01975.17 gi|313117112|ref|YP_004038236.1| - 0.11 12.3 0.3 0.21 11.3 0.3 1.5 1 1 0 1 1 1 0 Survival protein SurE DUF4177 PF13783.6 gi|313117113|ref|YP_004038237.1| - 4.6e-05 23.6 0.0 6.8e-05 23.1 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) RVT_3 PF13456.6 gi|313117114|ref|YP_004038238.1| - 6.8e-09 35.6 0.0 8.8e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|313117114|ref|YP_004038238.1| - 2.6e-07 30.9 0.0 3.2e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 RNase H SfsA PF03749.13 gi|313117115|ref|YP_004038239.1| - 5.2e-38 130.1 0.0 7.9e-38 129.5 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|313117115|ref|YP_004038239.1| - 6.1e-15 55.1 0.0 1.3e-14 54.1 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain ChuX_HutX PF06228.13 gi|313117115|ref|YP_004038239.1| - 0.034 13.9 0.0 1.3 8.8 0.0 2.2 1 1 1 2 2 2 0 Haem utilisation ChuX/HutX Polbeta PF18765.1 gi|313117117|ref|YP_004038241.1| - 6.6e-10 38.9 0.0 9.2e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|313117117|ref|YP_004038241.1| - 3.2e-06 27.3 0.1 4.1e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Pox_P21 PF05313.12 gi|313117118|ref|YP_004038242.1| - 0.39 10.3 3.8 0.1 12.2 0.4 1.6 1 1 1 2 2 2 0 Poxvirus P21 membrane protein Imm17 PF15562.6 gi|313117118|ref|YP_004038242.1| - 0.91 9.4 0.0 0.91 9.4 0.0 2.8 3 0 0 3 3 3 0 Immunity protein 17 HTH_45 PF14947.6 gi|313117121|ref|YP_004038245.1| - 6e-07 29.4 0.1 1.6e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|313117121|ref|YP_004038245.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.19 gi|313117121|ref|YP_004038245.1| - 0.042 14.0 0.2 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 Trp repressor protein HTH_20 PF12840.7 gi|313117121|ref|YP_004038245.1| - 0.095 12.8 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TgMIC1 PF11476.8 gi|313117123|ref|YP_004038247.1| - 0.038 13.7 0.1 0.06 13.1 0.1 1.3 1 0 0 1 1 1 0 Toxoplasma gondii micronemal protein 1 TgMIC1 DUF2203 PF09969.9 gi|313117124|ref|YP_004038248.1| - 0.03 15.1 1.0 0.091 13.5 0.3 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) APG17 PF04108.12 gi|313117124|ref|YP_004038248.1| - 0.037 13.2 0.0 0.05 12.7 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 ZapB PF06005.12 gi|313117124|ref|YP_004038248.1| - 0.037 14.4 0.0 0.068 13.6 0.0 1.3 1 0 0 1 1 1 0 Cell division protein ZapB ArdA PF07275.11 gi|313117124|ref|YP_004038248.1| - 0.076 13.6 0.1 0.11 13.1 0.1 1.2 1 0 0 1 1 1 0 Antirestriction protein (ArdA) BLOC1_2 PF10046.9 gi|313117124|ref|YP_004038248.1| - 0.11 12.8 0.1 0.26 11.6 0.1 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YabA PF06156.13 gi|313117124|ref|YP_004038248.1| - 0.17 12.5 0.1 0.25 12.0 0.1 1.2 1 0 0 1 1 1 0 Initiation control protein YabA Peripla_BP_2 PF01497.18 gi|313117128|ref|YP_004038252.1| - 5.4e-23 81.8 0.0 1.1e-22 80.8 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313117128|ref|YP_004038252.1| - 0.0013 18.5 0.2 0.0023 17.7 0.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF423 PF04241.15 gi|313117131|ref|YP_004038255.1| - 0.062 13.5 0.4 0.062 13.5 0.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF423) Renin_r PF07850.14 gi|313117131|ref|YP_004038255.1| - 5.2 7.7 6.4 1.1 9.9 0.5 2.1 1 1 1 2 2 2 0 Renin receptor-like protein DUF202 PF02656.15 gi|313117131|ref|YP_004038255.1| - 9.8 6.7 13.5 1.1e+03 0.1 13.5 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3040 PF11239.8 gi|313117132|ref|YP_004038256.1| - 0.16 12.3 4.6 0.28 11.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF354 PF04007.12 gi|313122370|ref|YP_004038257.1| - 1.9e-29 102.8 0.0 2.4e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Vwaint PF14624.6 gi|313122371|ref|YP_004038258.1| - 0.073 13.2 0.9 14 5.9 0.1 2.3 2 0 0 2 2 2 0 VWA / Hh protein intein-like GFO_IDH_MocA PF01408.22 gi|313122372|ref|YP_004038259.1| - 1.4e-23 84.0 0.0 2.4e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|313122372|ref|YP_004038259.1| - 0.028 14.9 0.1 0.056 13.9 0.1 1.5 1 0 0 1 1 1 0 CoA binding domain F420_oxidored PF03807.17 gi|313122372|ref|YP_004038259.1| - 0.036 14.6 0.0 0.1 13.2 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.24 gi|313122373|ref|YP_004038260.1| - 1e-13 51.2 0.2 9.5e-07 28.5 0.0 2.2 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|313122373|ref|YP_004038260.1| - 0.045 12.6 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) VCBS PF13517.6 gi|313122374|ref|YP_004038261.1| - 1e-25 90.0 22.3 1.1e-10 41.9 0.7 5.9 4 2 2 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|313122374|ref|YP_004038261.1| - 2.5e-17 62.7 28.0 0.018 15.2 0.0 7.2 7 0 0 7 7 7 6 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|313122374|ref|YP_004038261.1| - 1.9e-05 24.1 8.1 5.3 6.4 0.0 6.3 6 1 1 7 7 7 2 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.6 gi|313122374|ref|YP_004038261.1| - 0.017 15.1 0.8 7.1 6.7 0.0 4.0 5 0 0 5 5 5 0 Ciliary BBSome complex subunit 2, middle region Itfg2 PF15907.5 gi|313122374|ref|YP_004038261.1| - 0.044 12.8 5.1 3.4 6.6 0.4 3.7 3 1 2 5 5 5 0 Integrin-alpha FG-GAP repeat-containing protein 2 EF-hand_5 PF13202.6 gi|313122374|ref|YP_004038261.1| - 0.073 12.6 16.6 1.5 8.4 0.6 5.4 5 0 0 5 5 5 0 EF hand PliI PF16743.5 gi|313122374|ref|YP_004038261.1| - 0.11 12.2 9.3 14 5.5 0.1 4.8 2 2 2 5 5 5 0 Periplasmic lysozyme inhibitor of I-type lysozyme EF-hand_1 PF00036.32 gi|313122374|ref|YP_004038261.1| - 4.8 7.0 18.2 6.8 6.5 0.4 5.5 6 0 0 6 6 6 0 EF hand Dockerin_1 PF00404.18 gi|313122374|ref|YP_004038261.1| - 8.1 6.7 14.2 74 3.7 0.1 5.5 6 0 0 6 6 6 0 Dockerin type I domain Methyltransf_21 PF05050.12 gi|313122375|ref|YP_004038262.1| - 2.7e-17 63.3 0.0 3.7e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|313122375|ref|YP_004038262.1| - 2.7e-07 30.2 0.0 1.9e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|313122375|ref|YP_004038262.1| - 1.3e-06 28.3 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|313122375|ref|YP_004038262.1| - 0.035 13.7 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|313122375|ref|YP_004038262.1| - 0.039 13.9 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313122375|ref|YP_004038262.1| - 0.066 13.9 0.0 0.18 12.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Polysacc_deac_1 PF01522.21 gi|313122376|ref|YP_004038263.1| - 2.7e-28 98.4 0.0 4.9e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF693 PF05113.13 gi|313122376|ref|YP_004038263.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF693) Glycos_transf_2 PF00535.26 gi|313122377|ref|YP_004038264.1| - 6.7e-14 52.1 0.3 1.2e-13 51.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313122377|ref|YP_004038264.1| - 3e-09 37.1 0.9 4.9e-08 33.1 0.9 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313122377|ref|YP_004038264.1| - 1.6e-08 34.4 0.1 0.00036 20.1 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|313122377|ref|YP_004038264.1| - 0.033 13.8 0.0 0.065 12.9 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase ThiP_synth PF10120.9 gi|313122377|ref|YP_004038264.1| - 0.037 13.6 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Thiamine-phosphate synthase Glyco_trans_2_3 PF13632.6 gi|313122377|ref|YP_004038264.1| - 0.13 12.1 0.6 2.4 8.0 0.6 2.2 1 1 0 1 1 1 0 Glycosyl transferase family group 2 COG6 PF06419.11 gi|313122378|ref|YP_004038265.1| - 0.017 13.4 0.0 0.018 13.3 0.0 1.0 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Glycos_transf_1 PF00534.20 gi|313122380|ref|YP_004038267.1| - 4.6e-25 88.1 0.0 7e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313122380|ref|YP_004038267.1| - 1.1e-24 87.3 0.0 2.4e-24 86.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313122380|ref|YP_004038267.1| - 9.7e-16 58.2 1.1 1.9e-15 57.3 1.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313122380|ref|YP_004038267.1| - 1.6e-14 54.7 3.4 3.3e-14 53.6 3.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|313122380|ref|YP_004038267.1| - 9.8e-10 38.7 0.0 4.1e-08 33.5 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|313122380|ref|YP_004038267.1| - 0.00052 20.1 0.0 0.00082 19.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Phosphodiest PF01663.22 gi|313122381|ref|YP_004038268.1| - 3.5e-47 161.7 0.0 5.7e-46 157.7 0.0 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Beta_helix PF13229.6 gi|313122382|ref|YP_004038269.1| - 6e-06 26.2 9.6 0.0034 17.2 2.4 3.3 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|313122382|ref|YP_004038269.1| - 0.0023 17.8 1.8 0.17 11.7 0.2 3.4 1 1 2 3 3 3 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|313122383|ref|YP_004038270.1| - 0.00059 19.7 28.8 0.0045 16.8 6.2 4.3 4 1 0 5 5 5 2 Right handed beta helix region DUF4115 PF13464.6 gi|313122383|ref|YP_004038270.1| - 0.019 15.1 0.1 6.3 7.1 0.0 3.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) TAT_signal PF10518.9 gi|313122383|ref|YP_004038270.1| - 3.1 7.8 14.3 10 6.2 14.3 1.9 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MKRN1_C PF15815.5 gi|313122384|ref|YP_004038271.1| - 0.061 13.7 0.2 0.091 13.2 0.2 1.4 1 1 0 1 1 1 0 E3 ubiquitin-protein ligase makorin-1, C-terminal Sulfatase PF00884.23 gi|313122385|ref|YP_004038272.1| - 3.6e-43 148.1 0.2 4.6e-43 147.8 0.2 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.18 gi|313122385|ref|YP_004038272.1| - 0.088 12.2 0.2 0.17 11.2 0.2 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.26 gi|313122386|ref|YP_004038273.1| - 2.4e-33 115.3 0.1 3.8e-33 114.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313122386|ref|YP_004038273.1| - 1.1e-20 74.5 0.5 2e-20 73.7 0.5 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|313122386|ref|YP_004038273.1| - 8.4e-11 41.9 0.0 6.6e-10 38.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 TPR_16 PF13432.6 gi|313122386|ref|YP_004038273.1| - 0.064 13.9 1.3 0.16 12.7 1.3 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat UPF0167 PF03691.14 gi|313122386|ref|YP_004038273.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) TPR_2 PF07719.17 gi|313122386|ref|YP_004038273.1| - 0.084 13.0 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Polysacc_synt_3 PF13440.6 gi|313122387|ref|YP_004038274.1| - 4.2e-75 252.7 5.9 4.2e-75 252.7 5.9 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|313122387|ref|YP_004038274.1| - 1e-35 123.5 10.0 1e-35 123.5 10.0 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|313122387|ref|YP_004038274.1| - 5.7e-16 58.9 14.0 5.7e-16 58.9 14.0 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain DUF2613 PF11021.8 gi|313122387|ref|YP_004038274.1| - 0.061 13.4 0.5 0.061 13.4 0.5 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2613) Kinocilin PF15033.6 gi|313122387|ref|YP_004038274.1| - 0.075 12.7 9.1 0.13 12.0 0.1 4.1 4 0 0 4 4 4 0 Kinocilin protein Sulfatase PF00884.23 gi|313122388|ref|YP_004038275.1| - 2.6e-34 119.0 0.6 3.4e-34 118.6 0.6 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|313122388|ref|YP_004038275.1| - 0.00038 20.1 0.1 0.12 11.9 0.0 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|313122388|ref|YP_004038275.1| - 0.077 12.4 0.7 0.13 11.6 0.7 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily HAD_2 PF13419.6 gi|313122389|ref|YP_004038276.1| - 4.3e-19 69.3 0.0 6.4e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|313122389|ref|YP_004038276.1| - 1.9e-09 38.1 2.0 7.4e-08 32.9 0.6 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313122389|ref|YP_004038276.1| - 1.6e-08 35.2 0.2 2.5e-08 34.6 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|313122389|ref|YP_004038276.1| - 2.8e-08 33.7 0.1 6.8e-08 32.5 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Glycos_transf_2 PF00535.26 gi|313122390|ref|YP_004038277.1| - 1.2e-23 83.8 0.0 2.6e-23 82.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313122390|ref|YP_004038277.1| - 8.4e-08 32.4 0.2 1.8e-07 31.3 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|313122390|ref|YP_004038277.1| - 0.076 13.5 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Amidohydro_2 PF04909.14 gi|313122391|ref|YP_004038278.1| - 8.4e-51 173.5 1.1 1.2e-50 172.9 1.1 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|313122391|ref|YP_004038278.1| - 0.0006 19.3 0.0 0.0052 16.2 0.0 2.1 1 1 0 1 1 1 1 TatD related DNase ECH_1 PF00378.20 gi|313122392|ref|YP_004038279.1| - 3.9e-59 200.0 0.3 4.3e-59 199.8 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313122392|ref|YP_004038279.1| - 4.6e-30 105.3 0.2 6.3e-30 104.8 0.2 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase HTH_10 PF04967.12 gi|313122393|ref|YP_004038280.1| - 4.8e-19 67.9 0.0 8.5e-19 67.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313122393|ref|YP_004038280.1| - 1.4e-09 38.0 0.9 1.9e-09 37.6 0.3 1.5 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|313122393|ref|YP_004038280.1| - 0.014 14.9 0.0 0.041 13.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 gi|313122393|ref|YP_004038280.1| - 0.035 13.7 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|313122393|ref|YP_004038280.1| - 0.058 13.2 0.5 0.24 11.2 0.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PaaA_PaaC PF05138.12 gi|313122394|ref|YP_004038281.1| - 2.3e-76 256.4 0.4 2.8e-76 256.1 0.4 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaB PF06243.11 gi|313122395|ref|YP_004038282.1| - 4.2e-21 75.0 0.1 5.2e-21 74.7 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|313122396|ref|YP_004038283.1| - 4.5e-57 193.2 0.7 6.1e-57 192.8 0.7 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|313122396|ref|YP_004038283.1| - 0.00011 22.0 0.2 0.00024 20.9 0.2 1.6 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Rubrerythrin PF02915.17 gi|313122396|ref|YP_004038283.1| - 0.0054 17.1 0.6 0.055 13.9 0.2 2.7 1 1 1 2 2 2 1 Rubrerythrin HEAT_2 PF13646.6 gi|313122396|ref|YP_004038283.1| - 0.015 15.7 0.3 0.69 10.3 0.1 2.8 2 1 0 2 2 2 0 HEAT repeats SAM_LFY PF01698.16 gi|313122396|ref|YP_004038283.1| - 0.035 14.1 1.0 0.059 13.3 0.1 1.8 2 0 0 2 2 2 0 Floricaula / Leafy protein SAM domain PerC PF06069.11 gi|313122396|ref|YP_004038283.1| - 0.091 13.0 0.6 0.46 10.8 0.3 2.3 2 1 1 3 3 3 0 PerC transcriptional activator FeS_assembly_P PF01883.19 gi|313122397|ref|YP_004038284.1| - 2.3e-20 72.6 0.2 3e-20 72.1 0.2 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein HMA PF00403.26 gi|313122397|ref|YP_004038284.1| - 0.18 12.2 0.1 2.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain Zn-ribbon_8 PF09723.10 gi|313122398|ref|YP_004038285.1| - 0.00024 21.2 3.0 0.031 14.4 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|313122398|ref|YP_004038285.1| - 0.0016 18.7 4.4 0.0019 18.5 4.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Toxin_16 PF07945.11 gi|313122398|ref|YP_004038285.1| - 0.025 14.5 1.4 0.025 14.5 1.4 1.5 2 0 0 2 2 2 0 Janus-atracotoxin TF_Zn_Ribbon PF08271.12 gi|313122398|ref|YP_004038285.1| - 0.025 14.1 6.0 0.25 10.9 6.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|313122398|ref|YP_004038285.1| - 0.13 12.9 2.7 0.17 12.5 2.7 1.2 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_9 PF14369.6 gi|313122398|ref|YP_004038285.1| - 0.34 11.2 0.2 0.34 11.2 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon Aldedh PF00171.22 gi|313122399|ref|YP_004038286.1| - 2.2e-177 590.2 0.0 2.5e-177 590.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.14 gi|313122399|ref|YP_004038286.1| - 0.06 13.8 0.0 0.23 11.9 0.0 2.0 1 1 0 1 1 1 0 YCII-related domain 4HBT PF03061.22 gi|313122400|ref|YP_004038287.1| - 2.4e-14 53.4 0.3 3.8e-14 52.8 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|313122400|ref|YP_004038287.1| - 5.1e-07 29.9 0.0 6.5e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|313122400|ref|YP_004038287.1| - 0.013 15.8 0.0 0.018 15.3 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily AMP-binding_C_2 PF14535.6 gi|313122401|ref|YP_004038288.1| - 2.2e-23 82.3 0.0 4.9e-23 81.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|313122401|ref|YP_004038288.1| - 6e-16 58.1 1.0 1.4e-15 56.9 1.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|313122401|ref|YP_004038288.1| - 0.021 13.7 0.0 0.043 12.7 0.0 1.4 1 0 0 1 1 1 0 GH3 auxin-responsive promoter ABC_tran PF00005.27 gi|313122402|ref|YP_004038289.1| - 6.4e-34 117.4 0.0 8.9e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122402|ref|YP_004038289.1| - 3.8e-09 36.8 0.4 0.0011 18.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313122402|ref|YP_004038289.1| - 0.012 15.8 0.6 0.12 12.7 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|313122402|ref|YP_004038289.1| - 0.015 15.6 0.5 0.024 15.0 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|313122402|ref|YP_004038289.1| - 0.017 14.8 0.1 0.033 13.9 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|313122402|ref|YP_004038289.1| - 0.023 13.9 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.19 gi|313122402|ref|YP_004038289.1| - 0.027 13.9 0.1 4.2 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 gi|313122402|ref|YP_004038289.1| - 0.034 13.3 0.1 0.051 12.8 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|313122402|ref|YP_004038289.1| - 0.044 13.3 0.2 0.071 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|313122402|ref|YP_004038289.1| - 0.059 13.9 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313122402|ref|YP_004038289.1| - 0.069 12.9 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|313122402|ref|YP_004038289.1| - 0.12 12.5 0.2 0.32 11.1 0.0 1.7 2 1 1 3 3 3 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|313122402|ref|YP_004038289.1| - 0.12 12.0 0.3 0.21 11.2 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|313122402|ref|YP_004038289.1| - 0.14 12.1 0.5 0.31 10.9 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|313122402|ref|YP_004038289.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122402|ref|YP_004038289.1| - 0.15 11.8 1.0 0.19 11.4 1.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313122402|ref|YP_004038289.1| - 0.17 12.3 0.1 0.49 10.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|313122402|ref|YP_004038289.1| - 0.19 12.0 0.3 1.4 9.2 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|313122403|ref|YP_004038290.1| - 1.8e-28 99.8 0.0 2.3e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|313122403|ref|YP_004038290.1| - 3.9e-08 33.0 0.0 8.9e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|313122403|ref|YP_004038290.1| - 0.00016 21.6 0.1 0.025 14.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|313122403|ref|YP_004038290.1| - 0.00019 21.2 0.1 0.0003 20.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|313122403|ref|YP_004038290.1| - 0.00057 19.2 0.0 0.00086 18.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.6 gi|313122403|ref|YP_004038290.1| - 0.00094 19.7 0.0 0.0011 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|313122403|ref|YP_004038290.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|313122403|ref|YP_004038290.1| - 0.098 12.7 0.4 0.19 11.8 0.4 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|313122403|ref|YP_004038290.1| - 0.14 11.6 0.2 0.29 10.5 0.2 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|313122403|ref|YP_004038290.1| - 0.14 11.8 0.1 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|313122403|ref|YP_004038290.1| - 0.16 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|313122403|ref|YP_004038290.1| - 0.31 10.7 0.0 0.36 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|313122404|ref|YP_004038291.1| - 3.1e-84 282.3 86.8 4.6e-48 163.7 40.5 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|313122405|ref|YP_004038292.1| - 2.3e-70 237.9 4.5 2.8e-70 237.7 4.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|313122405|ref|YP_004038292.1| - 9.2e-34 117.0 0.2 1.1e-33 116.7 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|313122405|ref|YP_004038292.1| - 3.8e-15 55.9 0.0 5.2e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.13 gi|313122405|ref|YP_004038292.1| - 0.028 14.4 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family MaoC_dehydratas PF01575.19 gi|313122406|ref|YP_004038293.1| - 2.5e-19 69.0 0.1 3.2e-19 68.7 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313122406|ref|YP_004038293.1| - 0.0044 17.2 0.3 0.014 15.6 0.3 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|313122407|ref|YP_004038294.1| - 6e-13 49.0 1.5 1.1e-12 48.1 1.5 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|313122407|ref|YP_004038294.1| - 1e-07 32.2 0.0 1.3e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|313122407|ref|YP_004038294.1| - 0.0044 17.3 0.6 0.0056 17.0 0.6 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.6 gi|313122407|ref|YP_004038294.1| - 0.0097 15.2 0.1 0.016 14.5 0.1 1.3 1 0 0 1 1 1 1 Polyketide synthase dehydratase AMP-binding_C_2 PF14535.6 gi|313122408|ref|YP_004038295.1| - 1.8e-22 79.5 0.0 4.3e-22 78.2 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|313122408|ref|YP_004038295.1| - 5e-18 64.9 0.2 1.5e-17 63.4 0.2 1.7 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|313122408|ref|YP_004038295.1| - 0.0025 16.9 0.0 0.1 11.6 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE 3HCDH_N PF02737.18 gi|313122409|ref|YP_004038296.1| - 4.8e-64 215.5 2.3 7.4e-64 214.9 2.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|313122409|ref|YP_004038296.1| - 3.2e-32 111.0 0.3 1.1e-31 109.3 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|313122409|ref|YP_004038296.1| - 4.7e-06 26.7 0.1 8.5e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|313122409|ref|YP_004038296.1| - 3.7e-05 23.4 0.2 5.9e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|313122409|ref|YP_004038296.1| - 0.00013 22.2 3.6 0.00033 20.8 3.6 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|313122409|ref|YP_004038296.1| - 0.00068 20.2 2.2 0.034 14.7 2.2 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HisG PF01634.18 gi|313122409|ref|YP_004038296.1| - 0.02 14.9 1.1 0.028 14.4 0.4 1.6 2 0 0 2 2 2 0 ATP phosphoribosyltransferase AlaDh_PNT_C PF01262.21 gi|313122409|ref|YP_004038296.1| - 0.029 13.6 0.5 0.11 11.8 1.2 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|313122409|ref|YP_004038296.1| - 0.13 12.5 1.1 0.2 11.9 0.2 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF3618 PF12277.8 gi|313122409|ref|YP_004038296.1| - 0.21 11.9 1.5 19 5.6 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) ECH_1 PF00378.20 gi|313122410|ref|YP_004038297.1| - 5.5e-65 219.2 0.1 6.2e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|313122410|ref|YP_004038297.1| - 4.3e-36 125.1 0.1 1.8e-30 106.6 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NTP_transf_5 PF14907.6 gi|313122410|ref|YP_004038297.1| - 0.062 12.9 0.3 0.43 10.1 0.1 2.0 1 1 0 2 2 2 0 Uncharacterised nucleotidyltransferase PrgH PF09480.10 gi|313122410|ref|YP_004038297.1| - 0.12 11.7 0.1 0.16 11.3 0.1 1.1 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) MmlI PF09448.10 gi|313122412|ref|YP_004038299.1| - 5.6e-16 59.0 0.5 7.9e-15 55.3 0.5 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|313122412|ref|YP_004038299.1| - 8.5e-14 52.5 1.9 2.1e-13 51.2 1.9 1.6 1 1 0 1 1 1 1 EthD domain Dabb PF07876.12 gi|313122412|ref|YP_004038299.1| - 0.027 15.1 0.1 0.038 14.6 0.1 1.3 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain Ald_deCOase PF11266.8 gi|313122412|ref|YP_004038299.1| - 0.11 12.2 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Long-chain fatty aldehyde decarbonylase HD PF01966.22 gi|313122414|ref|YP_004038301.1| - 3.1e-09 37.1 0.0 4.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 HD domain MmlI PF09448.10 gi|313122415|ref|YP_004038302.1| - 0.083 13.4 0.0 0.091 13.2 0.0 1.0 1 0 0 1 1 1 0 Methylmuconolactone methyl-isomerase zinc-ribbons_6 PF07191.12 gi|313122416|ref|YP_004038303.1| - 0.0052 16.7 0.4 0.0082 16.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbons zf-ribbon_3 PF13248.6 gi|313122416|ref|YP_004038303.1| - 0.016 14.6 1.5 3 7.4 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|313122416|ref|YP_004038303.1| - 0.033 14.2 2.2 0.13 12.3 2.2 1.9 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|313122416|ref|YP_004038303.1| - 0.051 13.1 2.5 4.3 6.9 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|313122416|ref|YP_004038303.1| - 0.052 13.6 1.5 2 8.6 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain PADR1 PF08063.12 gi|313122416|ref|YP_004038303.1| - 0.076 12.8 4.4 2.8 7.8 0.5 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain Zn-ribbon_8 PF09723.10 gi|313122416|ref|YP_004038303.1| - 0.13 12.4 4.8 3.7 7.7 0.1 2.5 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|313122416|ref|YP_004038303.1| - 0.14 12.3 1.0 0.14 12.3 1.0 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.19 gi|313122416|ref|YP_004038303.1| - 0.16 11.8 4.1 1.4 8.8 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2_3 PF13878.6 gi|313122416|ref|YP_004038303.1| - 0.61 10.0 2.9 5.6 6.9 0.1 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO NTP_transferase PF00483.23 gi|313122418|ref|YP_004038305.1| - 5.7e-42 144.0 0.0 8.9e-42 143.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313122418|ref|YP_004038305.1| - 2.2e-15 57.4 0.8 4e-15 56.5 0.8 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|313122418|ref|YP_004038305.1| - 3.8e-11 42.2 14.3 0.01 15.6 0.2 4.9 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|313122418|ref|YP_004038305.1| - 3.7e-07 30.1 0.1 6.8e-07 29.2 0.1 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|313122418|ref|YP_004038305.1| - 0.011 16.0 0.5 0.031 14.6 0.5 1.7 1 0 0 1 1 1 0 Polymer-forming cytoskeletal CTP_transf_3 PF02348.19 gi|313122418|ref|YP_004038305.1| - 0.026 14.5 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Fucokinase PF07959.12 gi|313122418|ref|YP_004038305.1| - 0.28 10.1 0.0 0.62 8.9 0.0 1.5 1 1 0 1 1 1 0 L-fucokinase HTH_20 PF12840.7 gi|313122419|ref|YP_004038306.1| - 6.5e-09 35.7 0.1 1.1e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|313122419|ref|YP_004038306.1| - 1.2e-08 34.8 0.0 2.1e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|313122419|ref|YP_004038306.1| - 3.9e-07 29.8 0.0 7.1e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313122419|ref|YP_004038306.1| - 5.7e-07 29.3 0.1 8.8e-07 28.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313122419|ref|YP_004038306.1| - 9.7e-06 25.3 0.0 1.7e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313122419|ref|YP_004038306.1| - 2.3e-05 24.1 0.0 3.4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|313122419|ref|YP_004038306.1| - 4.4e-05 23.0 0.0 7.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|313122419|ref|YP_004038306.1| - 5.5e-05 22.8 0.0 9.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|313122419|ref|YP_004038306.1| - 0.00012 21.9 0.0 0.00022 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|313122419|ref|YP_004038306.1| - 0.00019 21.2 0.3 0.00044 20.0 0.3 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|313122419|ref|YP_004038306.1| - 0.00057 19.8 0.0 0.00096 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|313122419|ref|YP_004038306.1| - 0.00082 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|313122419|ref|YP_004038306.1| - 0.0017 18.0 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|313122419|ref|YP_004038306.1| - 0.002 17.9 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|313122419|ref|YP_004038306.1| - 0.0037 17.6 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator FUR PF01475.19 gi|313122419|ref|YP_004038306.1| - 0.0047 17.1 0.0 0.0078 16.4 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_27 PF13463.6 gi|313122419|ref|YP_004038306.1| - 0.0062 17.0 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|313122419|ref|YP_004038306.1| - 0.0098 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|313122419|ref|YP_004038306.1| - 0.01 15.9 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Fe_dep_repress PF01325.19 gi|313122419|ref|YP_004038306.1| - 0.011 15.9 0.0 0.029 14.6 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|313122419|ref|YP_004038306.1| - 0.019 15.1 0.0 0.034 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 gi|313122419|ref|YP_004038306.1| - 0.02 14.7 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 gi|313122419|ref|YP_004038306.1| - 0.023 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|313122419|ref|YP_004038306.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF4140 PF13600.6 gi|313122419|ref|YP_004038306.1| - 0.025 15.0 0.0 0.047 14.1 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Mga PF05043.13 gi|313122419|ref|YP_004038306.1| - 0.042 14.4 0.0 0.11 13.2 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|313122419|ref|YP_004038306.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|313122419|ref|YP_004038306.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain SIS PF01380.22 gi|313122420|ref|YP_004038307.1| - 4e-55 185.2 0.5 3.7e-28 98.0 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|313122420|ref|YP_004038307.1| - 2.3e-20 73.1 0.0 5.8e-20 71.9 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|313122420|ref|YP_004038307.1| - 8.5e-17 61.2 0.0 3.7e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|313122420|ref|YP_004038307.1| - 0.00023 20.2 0.0 0.00039 19.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|313122420|ref|YP_004038307.1| - 0.00042 20.3 0.9 0.087 12.8 0.1 2.8 2 1 0 3 3 3 2 SIS domain Hydrolase PF00702.26 gi|313122420|ref|YP_004038307.1| - 0.045 14.0 0.1 0.56 10.5 0.1 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase NTP_transferase PF00483.23 gi|313122421|ref|YP_004038308.1| - 4.7e-34 118.1 0.0 5.9e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313122421|ref|YP_004038308.1| - 3.2e-18 66.6 0.1 5.5e-18 65.8 0.1 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|313122421|ref|YP_004038308.1| - 1.3e-13 50.1 18.0 3.1e-05 23.5 0.8 4.8 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313122421|ref|YP_004038308.1| - 9.7e-11 41.2 17.4 1.3e-07 31.2 1.4 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|313122421|ref|YP_004038308.1| - 1.3e-05 25.1 0.1 2.6e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|313122421|ref|YP_004038308.1| - 0.05 12.6 0.8 0.22 10.4 0.1 2.4 3 0 0 3 3 3 0 L-fucokinase CTP_transf_3 PF02348.19 gi|313122421|ref|YP_004038308.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase FA_desaturase PF00487.24 gi|313122422|ref|YP_004038309.1| - 0.007 16.2 0.0 0.0077 16.1 0.0 1.1 1 0 0 1 1 1 1 Fatty acid desaturase GreA_GreB_N PF03449.15 gi|313122422|ref|YP_004038309.1| - 0.027 14.6 1.4 0.05 13.8 1.4 1.5 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal YwiC PF14256.6 gi|313122422|ref|YP_004038309.1| - 0.036 14.4 0.1 0.058 13.7 0.1 1.3 1 0 0 1 1 1 0 YwiC-like protein HTH_20 PF12840.7 gi|313122423|ref|YP_004038310.1| - 0.00045 20.2 0.0 0.43 10.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|313122423|ref|YP_004038310.1| - 0.00071 19.4 0.0 1.2 9.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family FA_desaturase PF00487.24 gi|313122423|ref|YP_004038310.1| - 0.17 11.7 2.0 0.23 11.2 2.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase PadR PF03551.14 gi|313122424|ref|YP_004038311.1| - 1.8e-13 50.2 0.2 2.2e-13 50.0 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|313122424|ref|YP_004038311.1| - 0.00025 20.8 0.0 0.0003 20.5 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|313122424|ref|YP_004038311.1| - 0.0063 16.3 0.0 0.0069 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|313122424|ref|YP_004038311.1| - 0.021 15.0 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.19 gi|313122424|ref|YP_004038311.1| - 0.046 13.9 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.6 gi|313122424|ref|YP_004038311.1| - 0.059 13.4 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|313122424|ref|YP_004038311.1| - 0.065 13.7 0.0 0.086 13.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Epimerase_2 PF02350.19 gi|313122426|ref|YP_004038313.1| - 3.9e-110 368.0 0.0 4.6e-110 367.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|313122426|ref|YP_004038313.1| - 0.021 14.8 0.0 0.088 12.8 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|313122426|ref|YP_004038313.1| - 0.17 11.9 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like UDPG_MGDP_dh_N PF03721.14 gi|313122427|ref|YP_004038314.1| - 8.7e-51 172.2 0.0 1.6e-50 171.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|313122427|ref|YP_004038314.1| - 1.3e-22 79.8 0.0 2.2e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|313122427|ref|YP_004038314.1| - 4.3e-20 72.1 0.9 1.3e-18 67.3 0.1 3.2 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|313122427|ref|YP_004038314.1| - 7.8e-07 29.6 0.3 0.46 11.1 0.0 3.8 3 1 1 4 4 4 3 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|313122427|ref|YP_004038314.1| - 2e-05 24.8 0.0 4.9e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|313122427|ref|YP_004038314.1| - 6.3e-05 22.4 0.0 0.021 14.2 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|313122427|ref|YP_004038314.1| - 0.00019 21.5 0.0 0.0032 17.5 0.0 2.4 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|313122427|ref|YP_004038314.1| - 0.00037 20.7 0.3 0.0078 16.5 0.0 2.9 2 1 1 3 3 3 1 TrkA-N domain 3HCDH_N PF02737.18 gi|313122427|ref|YP_004038314.1| - 0.00053 19.9 0.0 0.00098 19.1 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|313122427|ref|YP_004038314.1| - 0.00071 19.2 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NTP_transferase PF00483.23 gi|313122429|ref|YP_004038316.1| - 6e-40 137.4 0.0 7.3e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313122429|ref|YP_004038316.1| - 2.4e-17 63.8 0.0 3e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|313122429|ref|YP_004038316.1| - 8.9e-08 32.1 0.0 3.3e-07 30.3 0.0 1.8 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.16 gi|313122430|ref|YP_004038317.1| - 8.1e-32 109.8 0.0 1.4e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|313122430|ref|YP_004038317.1| - 1.6e-20 73.4 0.0 3e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|313122430|ref|YP_004038317.1| - 8.2e-17 61.7 0.2 2.8e-16 60.0 0.2 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|313122430|ref|YP_004038317.1| - 6.5e-15 55.1 1.1 1.1e-14 54.4 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|313122430|ref|YP_004038317.1| - 0.012 15.8 1.5 0.092 12.9 0.2 2.4 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain HalOD1 PF18545.1 gi|313122431|ref|YP_004038318.1| - 1.8e-23 82.6 0.2 2.2e-23 82.3 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 YdjM PF04307.14 gi|313122432|ref|YP_004038319.1| - 3.7e-08 32.9 5.7 6.2e-08 32.1 5.7 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PsbX PF06596.11 gi|313122432|ref|YP_004038319.1| - 0.034 14.2 2.9 0.034 14.2 2.9 1.9 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) DUF1616 PF07760.11 gi|313122432|ref|YP_004038319.1| - 0.036 13.5 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) Zn_dep_PLPC PF00882.18 gi|313122432|ref|YP_004038319.1| - 0.058 13.4 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 Zinc dependent phospholipase C Sulfatase PF00884.23 gi|313122433|ref|YP_004038320.1| - 7.5e-22 78.1 0.3 1e-21 77.7 0.3 1.2 1 0 0 1 1 1 1 Sulfatase DUF560 PF04575.13 gi|313122433|ref|YP_004038320.1| - 0.094 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF560) Glyco_trans_1_4 PF13692.6 gi|313122434|ref|YP_004038321.1| - 1.6e-26 93.3 0.2 4.2e-26 92.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|313122434|ref|YP_004038321.1| - 7.1e-25 87.5 0.0 1.2e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313122434|ref|YP_004038321.1| - 1.2e-18 67.7 1.6 2.3e-18 66.7 1.6 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313122434|ref|YP_004038321.1| - 1.2e-16 61.6 6.4 1.2e-16 61.6 6.4 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|313122434|ref|YP_004038321.1| - 1.7e-08 34.8 0.0 4.8e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1697 PF08002.11 gi|313122434|ref|YP_004038321.1| - 0.012 16.0 0.0 0.036 14.5 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1697) Methyltransf_11 PF08241.12 gi|313122435|ref|YP_004038322.1| - 8.7e-07 29.5 0.0 1.9e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|313122435|ref|YP_004038322.1| - 3.5e-05 24.4 0.0 9.4e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Glyco_hydro_88 PF07470.13 gi|313122435|ref|YP_004038322.1| - 0.023 13.8 1.2 1.3 8.0 0.3 2.6 2 1 1 3 3 3 0 Glycosyl Hydrolase Family 88 Sulfatase PF00884.23 gi|313122436|ref|YP_004038323.1| - 8.2e-38 130.5 3.1 1e-37 130.2 0.4 1.9 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.22 gi|313122436|ref|YP_004038323.1| - 0.00034 20.3 1.6 0.023 14.3 1.6 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|313122436|ref|YP_004038323.1| - 0.022 14.1 0.1 0.038 13.4 0.1 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily GSDH PF07995.11 gi|313122437|ref|YP_004038324.1| - 2.9e-48 164.9 0.0 4.9e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Big_9 PF17963.1 gi|313122437|ref|YP_004038324.1| - 9.4e-29 100.0 57.1 4.4e-16 59.4 16.3 10.2 7 2 2 9 9 9 3 Bacterial Ig domain Cadherin_4 PF17803.1 gi|313122437|ref|YP_004038324.1| - 2.6e-15 56.8 42.4 2.4e-10 40.9 11.2 9.8 7 2 2 9 9 9 3 Bacterial cadherin-like domain PKD PF00801.20 gi|313122437|ref|YP_004038324.1| - 1.9e-12 46.8 3.2 1.9e-12 46.8 3.2 5.6 5 0 0 5 5 5 1 PKD domain Cadherin_5 PF17892.1 gi|313122437|ref|YP_004038324.1| - 2.9e-10 40.0 19.8 6.9e-07 29.2 7.9 6.9 8 0 0 8 8 8 3 Cadherin-like domain Cadherin_3 PF16184.5 gi|313122437|ref|YP_004038324.1| - 0.00026 20.9 5.2 0.85 9.6 0.1 4.4 3 1 0 3 3 3 2 Cadherin-like PGF-CTERM PF18204.1 gi|313122437|ref|YP_004038324.1| - 0.046 13.7 2.9 0.12 12.4 2.9 1.8 1 0 0 1 1 1 0 PGF-CTERM motif DUF5122 PF17164.4 gi|313122437|ref|YP_004038324.1| - 0.17 12.2 0.1 0.17 12.2 0.1 5.7 5 1 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller ASH PF15780.5 gi|313122437|ref|YP_004038324.1| - 3.5 7.9 6.4 1 9.6 0.4 3.2 4 0 0 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF3244 PF11589.8 gi|313122438|ref|YP_004038325.1| - 0.043 13.9 1.0 0.39 10.8 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3244) GIDE PF12483.8 gi|313122439|ref|YP_004038326.1| - 9.2e-05 21.9 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 E3 Ubiquitin ligase DUF2207 PF09972.9 gi|313122439|ref|YP_004038326.1| - 0.15 10.8 0.0 0.8 8.4 0.0 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Cdc6_C PF09079.11 gi|313122440|ref|YP_004038327.1| - 6.2e-19 67.8 0.1 1.4e-18 66.6 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313122440|ref|YP_004038327.1| - 6.5e-12 45.9 0.0 1.9e-11 44.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|313122440|ref|YP_004038327.1| - 2e-11 44.5 1.8 4.4e-11 43.5 0.2 2.3 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|313122440|ref|YP_004038327.1| - 3.1e-05 24.0 0.0 5.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|313122440|ref|YP_004038327.1| - 9.8e-05 21.6 0.0 0.00023 20.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|313122440|ref|YP_004038327.1| - 0.00035 19.9 0.0 0.0006 19.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|313122440|ref|YP_004038327.1| - 0.00037 20.9 0.0 0.00097 19.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|313122440|ref|YP_004038327.1| - 0.0025 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|313122440|ref|YP_004038327.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|313122440|ref|YP_004038327.1| - 0.011 15.5 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase TniB PF05621.11 gi|313122440|ref|YP_004038327.1| - 0.011 15.1 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial TniB protein AAA_30 PF13604.6 gi|313122440|ref|YP_004038327.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|313122440|ref|YP_004038327.1| - 0.021 15.2 0.1 0.046 14.1 0.1 1.8 1 1 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|313122440|ref|YP_004038327.1| - 0.025 14.6 0.2 0.19 11.7 0.2 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_32 PF13654.6 gi|313122440|ref|YP_004038327.1| - 0.026 13.4 0.1 0.39 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|313122440|ref|YP_004038327.1| - 0.027 15.0 0.0 0.12 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|313122440|ref|YP_004038327.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|313122440|ref|YP_004038327.1| - 0.11 11.7 0.1 5.2 6.2 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain PIF1 PF05970.14 gi|313122440|ref|YP_004038327.1| - 0.12 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Sigma54_activat PF00158.26 gi|313122440|ref|YP_004038327.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|313122440|ref|YP_004038327.1| - 0.16 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|313122440|ref|YP_004038327.1| - 0.17 11.7 0.0 0.34 10.7 0.0 1.5 2 0 0 2 2 1 0 Bacterial dnaA protein TrwB_AAD_bind PF10412.9 gi|313122440|ref|YP_004038327.1| - 0.18 10.6 0.0 0.29 10.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HTH_32 PF13565.6 gi|313122441|ref|YP_004038328.1| - 3.6e-15 56.3 0.7 6e-15 55.6 0.7 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|313122441|ref|YP_004038328.1| - 5.6e-11 42.4 0.0 2.8e-10 40.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|313122441|ref|YP_004038328.1| - 1.4e-10 41.0 0.0 4.5e-10 39.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|313122441|ref|YP_004038328.1| - 7.9e-09 35.1 0.0 1.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|313122441|ref|YP_004038328.1| - 1.1e-06 28.2 0.2 6.2e-06 25.8 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|313122441|ref|YP_004038328.1| - 0.00026 21.2 0.0 0.00078 19.7 0.0 1.8 2 0 0 2 2 2 1 Transposase HTH_7 PF02796.15 gi|313122441|ref|YP_004038328.1| - 0.0016 18.5 0.1 1.7 8.8 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 gi|313122441|ref|YP_004038328.1| - 0.0022 17.7 0.0 0.0049 16.6 0.0 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain LZ_Tnp_IS481 PF13011.6 gi|313122441|ref|YP_004038328.1| - 0.0037 17.7 0.0 0.007 16.9 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_Tnp_1_2 PF13022.6 gi|313122441|ref|YP_004038328.1| - 0.034 14.3 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Sigma70_r4 PF04545.16 gi|313122441|ref|YP_004038328.1| - 0.042 13.4 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 MerR_1 PF13411.6 gi|313122441|ref|YP_004038328.1| - 0.045 13.9 0.1 0.14 12.3 0.1 1.8 2 0 0 2 2 2 0 MerR HTH family regulatory protein CENP-B_N PF04218.13 gi|313122441|ref|YP_004038328.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HBS1_N PF08938.10 gi|313122441|ref|YP_004038328.1| - 0.15 12.4 3.8 0.36 11.2 0.9 2.5 2 1 0 2 2 2 0 HBS1 N-terminus zf-HC2 PF13490.6 gi|313122441|ref|YP_004038328.1| - 0.6 10.4 0.2 0.6 10.4 0.2 3.0 3 0 0 3 3 3 0 Putative zinc-finger HypA PF01155.19 gi|313122442|ref|YP_004038329.1| - 0.021 14.9 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SCAB-ABD PF16711.5 gi|313122442|ref|YP_004038329.1| - 0.072 13.0 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein ZapB PF06005.12 gi|313122442|ref|YP_004038329.1| - 0.099 13.1 0.5 1.4 9.4 0.1 2.3 2 0 0 2 2 2 0 Cell division protein ZapB PknG_rubred PF16919.5 gi|313122442|ref|YP_004038329.1| - 0.24 11.5 3.1 4.6 7.4 3.1 2.1 1 1 0 1 1 1 0 Protein kinase G rubredoxin domain AAA_23 PF13476.6 gi|313122443|ref|YP_004038330.1| - 3.3e-10 40.8 17.9 3.3e-10 40.8 17.9 4.9 1 1 2 4 4 3 1 AAA domain AAA_15 PF13175.6 gi|313122443|ref|YP_004038330.1| - 1.4e-05 25.0 1.5 0.0008 19.2 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Spc7 PF08317.11 gi|313122443|ref|YP_004038330.1| - 1.7e-05 23.8 62.7 0.051 12.5 21.3 4.4 2 2 2 4 4 4 4 Spc7 kinetochore protein DUF4407 PF14362.6 gi|313122443|ref|YP_004038330.1| - 3.8e-05 23.2 42.9 0.011 15.1 1.6 3.5 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|313122443|ref|YP_004038330.1| - 9.9e-05 22.7 64.3 0.0071 16.6 16.2 4.3 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) NPV_P10 PF05531.12 gi|313122443|ref|YP_004038330.1| - 0.00024 21.5 32.5 0.26 11.8 0.2 6.9 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|313122443|ref|YP_004038330.1| - 0.00077 18.3 37.1 0.0025 16.6 12.9 2.5 2 1 0 2 2 2 2 AAA domain Baculo_PEP_C PF04513.12 gi|313122443|ref|YP_004038330.1| - 0.00098 19.2 20.6 1.2 9.1 2.4 5.5 3 2 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus HrpB7 PF09486.10 gi|313122443|ref|YP_004038330.1| - 0.0025 18.2 8.1 0.0025 18.2 8.1 5.6 2 2 1 3 3 2 2 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.9 gi|313122443|ref|YP_004038330.1| - 0.0038 16.4 47.6 0.28 10.2 13.8 4.3 1 1 2 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|313122443|ref|YP_004038330.1| - 0.0041 16.5 52.7 0.067 12.5 14.4 4.7 2 2 3 5 5 5 1 Growth-arrest specific micro-tubule binding HemX PF04375.14 gi|313122443|ref|YP_004038330.1| - 0.0045 16.3 33.2 0.024 14.0 4.3 4.2 2 2 2 4 4 4 1 HemX, putative uroporphyrinogen-III C-methyltransferase CENP-F_leu_zip PF10473.9 gi|313122443|ref|YP_004038330.1| - 0.0051 16.8 16.9 0.0051 16.8 16.9 5.2 2 2 2 4 4 4 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlxA PF14282.6 gi|313122443|ref|YP_004038330.1| - 0.0058 16.6 35.9 0.2 11.7 1.7 5.0 2 2 3 5 5 5 3 FlxA-like protein DHR10 PF18595.1 gi|313122443|ref|YP_004038330.1| - 0.0059 16.7 71.3 0.025 14.6 6.3 5.3 3 2 1 4 4 4 2 Designed helical repeat protein 10 domain Rab5-bind PF09311.11 gi|313122443|ref|YP_004038330.1| - 0.006 16.0 4.4 0.006 16.0 4.4 4.6 2 2 1 4 4 4 1 Rabaptin-like protein HsbA PF12296.8 gi|313122443|ref|YP_004038330.1| - 0.0062 17.0 1.1 0.053 14.0 0.2 2.8 2 0 0 2 2 2 1 Hydrophobic surface binding protein A MAD PF05557.13 gi|313122443|ref|YP_004038330.1| - 0.01 14.3 56.4 0.0036 15.7 21.7 2.3 2 1 0 2 2 2 0 Mitotic checkpoint protein DUF4200 PF13863.6 gi|313122443|ref|YP_004038330.1| - 0.01 16.2 61.6 0.02 15.3 18.8 5.9 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) CCDC-167 PF15188.6 gi|313122443|ref|YP_004038330.1| - 0.017 15.4 6.7 0.017 15.4 6.7 7.0 3 2 3 6 6 5 0 Coiled-coil domain-containing protein 167 BLOC1_2 PF10046.9 gi|313122443|ref|YP_004038330.1| - 0.021 15.1 47.4 0.029 14.7 1.8 6.8 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.21 gi|313122443|ref|YP_004038330.1| - 0.021 15.3 47.7 0.27 11.8 7.6 5.2 3 1 1 4 4 4 0 Spectrin repeat kleA_kleC PF17383.2 gi|313122443|ref|YP_004038330.1| - 0.026 14.9 1.0 0.026 14.9 1.0 6.3 3 2 5 8 8 7 0 Uncharacterized KorC regulated protein A Fzo_mitofusin PF04799.13 gi|313122443|ref|YP_004038330.1| - 0.031 13.8 37.4 0.11 12.1 1.9 6.1 2 2 3 6 6 6 0 fzo-like conserved region Val_tRNA-synt_C PF10458.9 gi|313122443|ref|YP_004038330.1| - 0.04 14.2 0.1 0.04 14.2 0.1 7.4 5 2 2 7 7 6 0 Valyl tRNA synthetase tRNA binding arm DUF1664 PF07889.12 gi|313122443|ref|YP_004038330.1| - 0.043 13.8 38.3 0.72 9.9 4.3 5.9 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) Fez1 PF06818.15 gi|313122443|ref|YP_004038330.1| - 0.048 14.1 55.0 0.13 12.7 22.2 3.9 1 1 2 3 3 3 0 Fez1 DUF3584 PF12128.8 gi|313122443|ref|YP_004038330.1| - 0.06 10.9 56.6 0.98 6.9 37.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) TMF_TATA_bd PF12325.8 gi|313122443|ref|YP_004038330.1| - 0.079 13.2 70.9 0.74 10.0 3.2 5.3 2 2 3 5 5 5 0 TATA element modulatory factor 1 TATA binding Laminin_II PF06009.12 gi|313122443|ref|YP_004038330.1| - 0.082 12.9 32.2 0.23 11.5 7.2 5.6 3 2 2 6 6 5 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|313122443|ref|YP_004038330.1| - 0.093 12.8 60.5 2.1 8.4 4.6 5.7 3 2 0 4 4 4 0 TPR/MLP1/MLP2-like protein ERM PF00769.19 gi|313122443|ref|YP_004038330.1| - 0.12 12.2 60.6 0.87 9.4 31.7 3.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family FPP PF05911.11 gi|313122443|ref|YP_004038330.1| - 0.14 10.4 48.0 0.068 11.4 19.2 2.5 2 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil FliD_N PF02465.18 gi|313122443|ref|YP_004038330.1| - 0.14 12.9 18.3 3.3 8.5 0.1 6.1 4 3 1 5 5 3 0 Flagellar hook-associated protein 2 N-terminus COG2 PF06148.11 gi|313122443|ref|YP_004038330.1| - 0.16 12.0 36.8 0.44 10.6 4.7 6.2 2 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Seryl_tRNA_N PF02403.22 gi|313122443|ref|YP_004038330.1| - 0.19 12.0 56.3 0.64 10.3 5.1 5.6 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|313122443|ref|YP_004038330.1| - 0.34 11.4 85.3 0.73 10.4 15.3 6.2 1 1 3 5 5 5 0 Apg6 coiled-coil region DUF5082 PF16888.5 gi|313122443|ref|YP_004038330.1| - 0.35 11.1 49.1 0.14 12.5 9.5 7.1 2 2 5 7 7 7 0 Domain of unknown function (DUF5082) Exonuc_VII_L PF02601.15 gi|313122443|ref|YP_004038330.1| - 0.41 10.2 32.8 3.4 7.1 12.3 3.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit FapA PF03961.13 gi|313122443|ref|YP_004038330.1| - 0.5 8.9 42.9 0.31 9.6 1.3 4.2 1 1 2 4 4 4 0 Flagellar Assembly Protein A WEMBL PF05701.11 gi|313122443|ref|YP_004038330.1| - 0.59 8.8 47.4 0.098 11.3 16.6 2.5 2 1 0 2 2 2 0 Weak chloroplast movement under blue light Taxilin PF09728.9 gi|313122443|ref|YP_004038330.1| - 0.67 9.1 45.2 1.7 7.8 19.5 2.5 2 0 0 2 2 2 0 Myosin-like coiled-coil protein Lectin_N PF03954.14 gi|313122443|ref|YP_004038330.1| - 0.87 9.3 19.6 6.2 6.6 1.6 4.6 3 1 1 4 4 4 0 Hepatic lectin, N-terminal domain DASH_Dam1 PF08653.10 gi|313122443|ref|YP_004038330.1| - 0.99 9.3 27.2 0.94 9.3 0.4 7.2 6 1 0 7 7 6 0 DASH complex subunit Dam1 UPF0242 PF06785.11 gi|313122443|ref|YP_004038330.1| - 1.1 9.4 66.2 0.4 10.8 8.4 4.2 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus DASH_Spc19 PF08287.11 gi|313122443|ref|YP_004038330.1| - 1.2 9.0 52.6 5 7.0 6.8 5.1 1 1 2 3 3 2 0 Spc19 TACC_C PF05010.14 gi|313122443|ref|YP_004038330.1| - 1.4 8.7 45.2 0.16 11.7 10.8 4.4 2 2 2 4 4 4 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Mod_r PF07200.13 gi|313122443|ref|YP_004038330.1| - 1.9 8.6 49.7 0.58 10.3 4.0 5.3 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein LPP PF04728.13 gi|313122443|ref|YP_004038330.1| - 3.1 8.3 22.7 0.91 10.0 1.1 7.2 5 2 3 8 8 8 0 Lipoprotein leucine-zipper DUF4201 PF13870.6 gi|313122443|ref|YP_004038330.1| - 3.1 7.5 54.3 0.013 15.2 18.2 5.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4201) DUF3450 PF11932.8 gi|313122443|ref|YP_004038330.1| - 3.1 7.0 58.0 1.1 8.5 15.5 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) Tropomyosin_1 PF12718.7 gi|313122443|ref|YP_004038330.1| - 3.3 7.8 79.9 7.3 6.7 29.9 5.0 1 1 3 4 4 4 0 Tropomyosin like ZapB PF06005.12 gi|313122443|ref|YP_004038330.1| - 5.2 7.6 70.4 0.068 13.6 12.4 7.8 4 3 2 6 6 5 0 Cell division protein ZapB WXG100 PF06013.12 gi|313122443|ref|YP_004038330.1| - 5.5 7.3 20.8 15 5.9 0.2 7.1 3 2 2 6 6 6 0 Proteins of 100 residues with WXG Fib_alpha PF08702.10 gi|313122443|ref|YP_004038330.1| - 5.8 7.1 36.0 3.1 8.0 2.2 4.7 3 1 0 4 4 4 0 Fibrinogen alpha/beta chain family OmpH PF03938.14 gi|313122443|ref|YP_004038330.1| - 6.1 7.2 49.2 9.8 6.5 0.7 5.0 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) ABC_tran_CTD PF16326.5 gi|313122443|ref|YP_004038330.1| - 6.3 7.1 73.8 0.34 11.2 8.7 7.3 3 2 1 5 5 5 0 ABC transporter C-terminal domain Baculo_F PF12259.8 gi|313122443|ref|YP_004038330.1| - 7.5 4.9 23.7 0.77 8.2 7.5 2.9 2 1 0 2 2 2 0 Baculovirus F protein PGF-CTERM PF18204.1 gi|313122444|ref|YP_004038331.1| - 4.9e-07 29.5 5.1 1e-06 28.5 5.1 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Trypan_PARP PF05887.11 gi|313122444|ref|YP_004038331.1| - 0.0005 20.1 3.1 0.0005 20.1 3.1 2.3 3 0 0 3 3 3 1 Procyclic acidic repetitive protein (PARP) bMG6 PF17962.1 gi|313122444|ref|YP_004038331.1| - 0.00075 19.6 0.3 0.14 12.3 0.0 3.7 3 0 0 3 3 3 1 Bacterial macroglobulin domain 6 Abhydrolase_1 PF00561.20 gi|313122447|ref|YP_004038334.1| - 2.6e-25 89.6 0.3 5.2e-24 85.3 0.3 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313122447|ref|YP_004038334.1| - 1e-21 78.6 3.4 1.3e-21 78.3 3.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313122447|ref|YP_004038334.1| - 5.9e-12 45.4 0.0 9e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|313122447|ref|YP_004038334.1| - 0.0078 15.7 0.1 0.096 12.1 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family Thioesterase PF00975.20 gi|313122447|ref|YP_004038334.1| - 0.1 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain DLH PF01738.18 gi|313122447|ref|YP_004038334.1| - 0.16 11.5 0.0 4.4 6.8 0.0 2.6 2 1 0 2 2 2 0 Dienelactone hydrolase family AAA_31 PF13614.6 gi|313122451|ref|YP_004038338.1| - 3.3e-35 121.6 0.0 4.2e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313122451|ref|YP_004038338.1| - 1.7e-17 63.7 0.0 2.2e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|313122451|ref|YP_004038338.1| - 3.4e-10 39.8 0.2 5.5e-08 32.6 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|313122451|ref|YP_004038338.1| - 5.1e-07 29.2 1.3 9.2e-05 21.8 0.5 2.6 3 0 0 3 3 3 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|313122451|ref|YP_004038338.1| - 6.9e-06 25.5 0.1 0.00029 20.1 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|313122451|ref|YP_004038338.1| - 5.7e-05 22.7 0.2 0.001 18.6 0.3 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|313122451|ref|YP_004038338.1| - 0.00073 19.1 0.0 0.0022 17.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|313122451|ref|YP_004038338.1| - 0.013 14.8 0.1 0.024 13.9 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein CLP1_P PF16575.5 gi|313122451|ref|YP_004038338.1| - 0.019 14.8 0.1 0.029 14.2 0.1 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glyco_transf_4 PF13439.6 gi|313122451|ref|YP_004038338.1| - 0.044 13.8 0.1 0.12 12.4 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 AAA_25 PF13481.6 gi|313122451|ref|YP_004038338.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|313122451|ref|YP_004038338.1| - 0.1 12.2 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Transglut_core PF01841.19 gi|313122452|ref|YP_004038339.1| - 6.9e-31 107.0 0.0 1.5e-30 105.9 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|313122452|ref|YP_004038339.1| - 7.3e-05 22.9 0.4 7.3e-05 22.9 0.4 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|313122452|ref|YP_004038339.1| - 0.0019 17.2 0.4 0.0033 16.4 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.6 gi|313122452|ref|YP_004038339.1| - 0.016 15.1 0.0 0.063 13.2 0.0 2.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily HLH PF00010.26 gi|313122453|ref|YP_004038340.1| - 0.022 14.7 0.2 7.6 6.6 0.1 2.3 2 0 0 2 2 2 0 Helix-loop-helix DNA-binding domain DUF58 PF01882.18 gi|313122454|ref|YP_004038341.1| - 1.8e-16 60.2 1.6 3.4e-16 59.3 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|313122454|ref|YP_004038341.1| - 8.6e-09 35.6 2.5 0.002 18.4 0.0 2.9 2 0 0 2 2 2 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|313122454|ref|YP_004038341.1| - 0.0009 19.5 2.0 0.051 13.8 0.2 3.0 1 1 1 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|313122454|ref|YP_004038341.1| - 0.0084 16.4 0.0 0.02 15.2 0.0 1.6 1 0 0 1 1 1 1 CARDB Fn3-like PF14310.6 gi|313122454|ref|YP_004038341.1| - 0.015 15.4 0.6 7.5 6.7 0.0 3.1 3 0 0 3 3 3 0 Fibronectin type III-like domain Acetyltransf_3 PF13302.7 gi|313122456|ref|YP_004038343.1| - 5.1e-22 79.0 0.0 6.4e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313122456|ref|YP_004038343.1| - 1.9e-11 44.3 0.0 2.6e-11 43.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|313122456|ref|YP_004038343.1| - 4.2e-08 33.4 0.0 5.3e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|313122456|ref|YP_004038343.1| - 1.9e-06 27.6 0.0 4.1e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313122456|ref|YP_004038343.1| - 0.038 13.9 0.0 0.089 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein Lys PF00062.20 gi|313122456|ref|YP_004038343.1| - 0.14 12.4 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family DUF4013 PF13197.6 gi|313122457|ref|YP_004038344.1| - 7.6e-39 133.2 17.2 7.6e-39 133.2 17.2 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Adeno_E3B PF03376.14 gi|313122457|ref|YP_004038344.1| - 1 9.7 12.8 2.4 8.4 0.0 3.5 3 0 0 3 3 3 0 Adenovirus E3B protein Man-6-P_recep PF02157.15 gi|313122457|ref|YP_004038344.1| - 1.1 8.2 3.8 0.22 10.6 0.1 1.6 2 0 0 2 2 2 0 Mannose-6-phosphate receptor Catalase-rel PF06628.12 gi|313122459|ref|YP_004038346.1| - 0.086 13.1 0.1 0.29 11.4 0.0 1.8 2 0 0 2 2 2 0 Catalase-related immune-responsive DUF2017 PF09438.10 gi|313122460|ref|YP_004038347.1| - 0.025 14.5 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) BAAT_C PF08840.11 gi|313122461|ref|YP_004038348.1| - 2.4e-39 135.5 0.0 5.4e-39 134.3 0.0 1.5 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Bile_Hydr_Trans PF04775.14 gi|313122461|ref|YP_004038348.1| - 4.9e-28 97.7 0.0 7.5e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA thioester hydrolase/BAAT N-terminal region DLH PF01738.18 gi|313122461|ref|YP_004038348.1| - 0.0021 17.7 0.1 0.14 11.7 0.2 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family Chlorophyllase2 PF12740.7 gi|313122461|ref|YP_004038348.1| - 0.0063 15.5 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 gi|313122461|ref|YP_004038348.1| - 0.01 14.9 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Chlorophyllase DUF5345 PF17280.2 gi|313122462|ref|YP_004038349.1| - 0.16 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5345) Rieske PF00355.26 gi|313122463|ref|YP_004038350.1| - 1.1e-09 38.1 0.1 1.5e-09 37.7 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|313122463|ref|YP_004038350.1| - 0.0042 17.0 0.0 0.0055 16.6 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain GCD14_N PF14801.6 gi|313122463|ref|YP_004038350.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term Antifungal_pept PF11410.8 gi|313122463|ref|YP_004038350.1| - 0.14 12.1 1.4 0.32 10.9 1.4 1.5 1 0 0 1 1 1 0 Antifungal peptide SprT-like PF10263.9 gi|313122464|ref|YP_004038351.1| - 1.1e-06 28.4 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|313122464|ref|YP_004038351.1| - 0.005 17.0 1.4 0.74 10.1 0.1 2.8 2 1 1 3 3 3 2 Domain of unknown function (DUF4157) Na_Ca_ex PF01699.24 gi|313122465|ref|YP_004038352.1| - 1.7e-45 154.7 35.6 6.1e-24 84.7 13.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein FixQ PF05545.11 gi|313122465|ref|YP_004038352.1| - 0.39 10.7 0.0 0.39 10.7 0.0 3.1 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF4407 PF14362.6 gi|313122465|ref|YP_004038352.1| - 2.2 7.6 5.3 1.3 8.3 0.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) AAA_3 PF07726.11 gi|313122466|ref|YP_004038353.1| - 1.2e-64 216.0 0.0 1.7e-64 215.5 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|313122466|ref|YP_004038353.1| - 4.9e-17 61.5 3.3 4.9e-17 61.5 3.3 2.2 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|313122466|ref|YP_004038353.1| - 1.7e-15 57.2 0.0 5.6e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313122466|ref|YP_004038353.1| - 1e-06 29.2 0.0 6.6e-06 26.6 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313122466|ref|YP_004038353.1| - 4.8e-05 23.1 0.0 0.00025 20.8 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|313122466|ref|YP_004038353.1| - 0.00082 18.5 0.0 0.0012 18.0 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|313122466|ref|YP_004038353.1| - 0.022 14.5 0.0 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|313122466|ref|YP_004038353.1| - 0.039 13.3 0.1 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MR_MLE_C PF13378.6 gi|313122467|ref|YP_004038354.1| - 7.7e-48 162.9 0.4 1e-47 162.5 0.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|313122467|ref|YP_004038354.1| - 9.5e-15 54.8 0.0 3.7e-13 49.7 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Creatininase PF02633.14 gi|313122468|ref|YP_004038355.1| - 2e-63 214.1 0.2 2.4e-63 213.8 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PRC PF05239.16 gi|313122469|ref|YP_004038356.1| - 1e-09 38.4 0.2 1.2e-09 38.1 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain PAS_3 PF08447.12 gi|313122471|ref|YP_004038358.1| - 6.8e-26 90.4 0.7 2.4e-13 50.1 0.0 3.9 5 0 0 5 5 4 2 PAS fold PAS_9 PF13426.7 gi|313122471|ref|YP_004038358.1| - 3.5e-18 65.8 0.2 6.5e-07 29.5 0.0 4.3 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|313122471|ref|YP_004038358.1| - 5.3e-18 65.1 3.9 3e-08 33.7 0.1 4.7 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|313122471|ref|YP_004038358.1| - 1.3e-17 64.4 0.2 5.2e-17 62.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|313122471|ref|YP_004038358.1| - 1.7e-16 60.4 8.5 4.9e-07 30.0 0.1 5.3 4 1 0 4 4 4 2 PAS fold Response_reg PF00072.24 gi|313122471|ref|YP_004038358.1| - 2.1e-16 60.1 0.0 9.3e-16 58.0 0.0 2.2 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|313122471|ref|YP_004038358.1| - 2e-12 46.9 5.9 3.1e-12 46.3 1.4 3.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|313122471|ref|YP_004038358.1| - 7e-12 45.8 1.3 2e-11 44.3 0.3 2.4 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|313122471|ref|YP_004038358.1| - 4e-11 42.7 0.0 4.1e-06 26.7 0.0 3.3 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|313122471|ref|YP_004038358.1| - 1.7e-07 31.7 0.1 1.6e-06 28.4 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.6 gi|313122471|ref|YP_004038358.1| - 9.6e-06 25.7 0.0 0.0034 17.5 0.0 2.7 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|313122471|ref|YP_004038358.1| - 0.0079 16.5 3.0 0.016 15.5 0.0 2.8 3 0 0 3 3 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.6 gi|313122471|ref|YP_004038358.1| - 0.0082 16.0 0.0 0.024 14.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3391 PF11871.8 gi|313122471|ref|YP_004038358.1| - 0.015 15.8 1.6 0.015 15.8 1.6 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3391) HATPase_c_2 PF13581.6 gi|313122471|ref|YP_004038358.1| - 0.027 14.4 0.3 0.23 11.4 0.0 2.7 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|313122471|ref|YP_004038358.1| - 0.45 10.7 5.0 13 6.0 0.0 4.8 4 1 1 5 5 5 0 PAS fold Spo0M PF07070.11 gi|313122472|ref|YP_004038359.1| - 1.8e-75 253.1 0.1 2.1e-75 252.9 0.1 1.0 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.22 gi|313122472|ref|YP_004038359.1| - 0.07 13.6 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain HTH_IclR PF09339.10 gi|313122473|ref|YP_004038360.1| - 2.8e-05 23.8 0.0 6.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Binary_toxB PF03495.14 gi|313122473|ref|YP_004038360.1| - 0.00021 21.4 36.0 0.002 18.3 5.0 6.1 2 1 3 5 5 5 3 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain MarR_2 PF12802.7 gi|313122473|ref|YP_004038360.1| - 0.0038 17.1 0.1 0.0075 16.1 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313122473|ref|YP_004038360.1| - 0.02 14.7 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|313122473|ref|YP_004038360.1| - 0.039 13.9 0.1 0.073 13.1 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|313122473|ref|YP_004038360.1| - 0.044 13.3 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|313122473|ref|YP_004038360.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF3489 PF11994.8 gi|313122473|ref|YP_004038360.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Aldo_ket_red PF00248.21 gi|313122474|ref|YP_004038361.1| - 5e-64 216.3 0.0 8.2e-63 212.3 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family SBP_bac_8 PF13416.6 gi|313122475|ref|YP_004038362.1| - 1e-43 150.2 0.1 1e-43 150.2 0.1 2.1 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein MCPsignal PF00015.21 gi|313122475|ref|YP_004038362.1| - 4.6e-42 143.7 53.2 7.9e-39 133.2 29.2 3.3 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_1 PF01547.25 gi|313122475|ref|YP_004038362.1| - 3e-32 112.8 1.2 6.2e-32 111.8 1.2 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HAMP PF00672.25 gi|313122475|ref|YP_004038362.1| - 1.3e-07 31.9 0.6 1.2e-05 25.6 0.1 3.6 2 1 0 2 2 2 1 HAMP domain EzrA PF06160.12 gi|313122475|ref|YP_004038362.1| - 3.1e-05 22.3 19.1 0.0017 16.7 9.7 2.2 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA SBP_bac_6 PF13343.6 gi|313122475|ref|YP_004038362.1| - 0.00017 21.1 0.0 0.28 10.6 0.0 2.5 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Mo25 PF08569.11 gi|313122475|ref|YP_004038362.1| - 0.0037 16.7 0.7 0.0062 15.9 0.0 1.7 2 0 0 2 2 2 1 Mo25-like DUF948 PF06103.11 gi|313122475|ref|YP_004038362.1| - 0.0064 16.7 38.9 0.13 12.5 3.8 6.2 2 1 2 5 5 4 2 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 gi|313122475|ref|YP_004038362.1| - 0.016 14.2 15.5 0.18 10.7 0.7 3.0 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Mod_r PF07200.13 gi|313122475|ref|YP_004038362.1| - 0.14 12.3 19.7 0.94 9.6 5.6 3.9 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Spc7 PF08317.11 gi|313122475|ref|YP_004038362.1| - 0.23 10.3 28.0 0.96 8.3 6.4 2.6 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|313122475|ref|YP_004038362.1| - 0.38 10.8 27.6 0.6 10.1 1.4 4.5 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) TssO PF17561.2 gi|313122475|ref|YP_004038362.1| - 0.46 10.6 1.9 5.7 7.0 0.1 3.0 1 1 2 3 3 3 0 Type VI secretion system, TssO Laminin_II PF06009.12 gi|313122475|ref|YP_004038362.1| - 0.51 10.4 41.8 0.8 9.7 3.3 5.1 3 2 2 5 5 4 0 Laminin Domain II BLOC1_2 PF10046.9 gi|313122475|ref|YP_004038362.1| - 0.72 10.2 26.7 7.2 7.0 0.6 5.7 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad4 PF08650.10 gi|313122475|ref|YP_004038362.1| - 1.4 9.0 6.1 13 5.8 0.1 4.3 4 0 0 4 4 4 0 DASH complex subunit Dad4 BAR_2 PF10455.9 gi|313122475|ref|YP_004038362.1| - 2.1 7.4 15.8 1 8.4 2.5 2.6 2 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking TMPIT PF07851.13 gi|313122475|ref|YP_004038362.1| - 2.1 7.5 15.7 0.41 9.9 0.4 3.1 2 2 1 3 3 3 0 TMPIT-like protein DUF2009 PF09418.10 gi|313122475|ref|YP_004038362.1| - 2.3 7.2 6.8 0.61 9.1 3.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2009) YkyA PF10368.9 gi|313122475|ref|YP_004038362.1| - 2.9 7.5 30.3 1.2 8.7 9.8 3.9 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein Prominin PF05478.11 gi|313122475|ref|YP_004038362.1| - 3.3 5.5 14.7 0.63 7.9 10.4 1.8 1 1 1 2 2 2 0 Prominin Seryl_tRNA_N PF02403.22 gi|313122475|ref|YP_004038362.1| - 3.6 7.9 24.6 8.5 6.7 4.7 4.9 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain FlgN PF05130.12 gi|313122475|ref|YP_004038362.1| - 4.1 7.9 26.0 1.3 9.5 4.5 5.1 2 1 4 6 6 6 0 FlgN protein DUF4618 PF15397.6 gi|313122475|ref|YP_004038362.1| - 4.3 6.7 15.2 4.3 6.7 4.3 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4618) Filament PF00038.21 gi|313122475|ref|YP_004038362.1| - 4.7 6.7 29.1 0.94 9.0 2.4 2.9 3 0 0 3 3 3 0 Intermediate filament protein DUF4709 PF15821.5 gi|313122475|ref|YP_004038362.1| - 5 7.5 7.1 0.9 9.9 0.2 3.1 4 1 0 4 4 3 0 Domain of unknown function (DUF4709) DUF745 PF05335.13 gi|313122475|ref|YP_004038362.1| - 5.1 6.8 44.8 0.28 10.9 2.9 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF745) Baculo_F PF12259.8 gi|313122475|ref|YP_004038362.1| - 5.1 5.5 6.4 1.5 7.3 0.2 2.2 2 0 0 2 2 2 0 Baculovirus F protein Med9 PF07544.13 gi|313122475|ref|YP_004038362.1| - 5.3 7.2 7.4 9.2 6.4 0.0 3.8 3 2 1 4 4 3 0 RNA polymerase II transcription mediator complex subunit 9 Not3 PF04065.15 gi|313122475|ref|YP_004038362.1| - 5.4 6.4 17.5 5.6 6.3 2.7 2.5 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component FUSC PF04632.12 gi|313122475|ref|YP_004038362.1| - 7.1 5.0 19.6 0.23 9.9 6.3 2.3 1 1 1 2 2 2 0 Fusaric acid resistance protein family GM_CSF PF01109.17 gi|313122475|ref|YP_004038362.1| - 7.6 6.7 5.6 14 5.9 0.5 3.3 2 1 0 3 3 3 0 Granulocyte-macrophage colony-stimulating factor adh_short_C2 PF13561.6 gi|313122476|ref|YP_004038363.1| - 3.2e-63 213.4 3.5 3.8e-63 213.2 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313122476|ref|YP_004038363.1| - 2.1e-59 200.3 2.2 2.8e-59 199.9 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313122476|ref|YP_004038363.1| - 3.1e-15 56.6 0.3 4e-15 56.2 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313122476|ref|YP_004038363.1| - 2.7e-05 23.7 0.1 4.4e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|313122476|ref|YP_004038363.1| - 0.0057 15.8 0.1 0.01 14.9 0.1 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain THF_DHG_CYH_C PF02882.19 gi|313122476|ref|YP_004038363.1| - 0.01 15.2 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GDP_Man_Dehyd PF16363.5 gi|313122476|ref|YP_004038363.1| - 0.014 14.8 0.1 0.023 14.1 0.1 1.5 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|313122476|ref|YP_004038363.1| - 0.048 13.6 0.4 0.095 12.6 0.4 1.5 1 0 0 1 1 1 0 NAD(P)H-binding VAPB_antitox PF02697.14 gi|313122477|ref|YP_004038364.1| - 1.4e-18 67.4 0.6 1.9e-18 67.0 0.6 1.2 1 0 0 1 1 1 1 Putative antitoxin DUF883 PF05957.13 gi|313122477|ref|YP_004038364.1| - 0.093 13.3 3.1 0.089 13.4 1.3 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) PIN PF01850.21 gi|313122478|ref|YP_004038365.1| - 4.1e-11 43.5 0.0 5.4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|313122478|ref|YP_004038365.1| - 0.0013 19.4 0.1 0.0015 19.3 0.1 1.4 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|313122478|ref|YP_004038365.1| - 0.02 15.4 0.0 0.044 14.3 0.0 1.6 1 1 1 2 2 2 0 PIN domain Acyl-CoA_dh_1 PF00441.24 gi|313122479|ref|YP_004038366.1| - 5.4e-38 130.6 1.0 7.7e-38 130.0 1.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313122479|ref|YP_004038366.1| - 7.1e-20 71.0 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|313122479|ref|YP_004038366.1| - 1.3e-19 70.9 0.4 2.9e-19 69.8 0.2 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|313122479|ref|YP_004038366.1| - 1.7e-16 60.7 1.4 3.1e-16 59.8 1.4 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|313122479|ref|YP_004038366.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Subtilosin_A PF11420.8 gi|313122479|ref|YP_004038366.1| - 0.066 13.2 0.1 0.17 11.9 0.1 1.7 1 0 0 1 1 1 0 Bacteriocin subtilosin A APH PF01636.23 gi|313122480|ref|YP_004038367.1| - 2e-43 149.0 6.6 2.8e-43 148.6 6.6 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|313122480|ref|YP_004038367.1| - 8.3e-05 22.0 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.11 gi|313122480|ref|YP_004038367.1| - 0.03 13.2 0.0 0.046 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) ABC_tran PF00005.27 gi|313122481|ref|YP_004038368.1| - 1.3e-27 97.0 0.0 1.7e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122481|ref|YP_004038368.1| - 4.6e-15 56.2 0.0 7.2e-10 39.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|313122481|ref|YP_004038368.1| - 0.00052 19.8 0.0 0.27 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|313122481|ref|YP_004038368.1| - 0.013 16.0 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122481|ref|YP_004038368.1| - 0.024 14.4 0.6 0.072 12.8 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|313122481|ref|YP_004038368.1| - 0.039 14.2 0.1 0.24 11.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313122481|ref|YP_004038368.1| - 0.046 14.1 0.0 0.25 11.8 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313122481|ref|YP_004038368.1| - 0.052 13.9 0.0 0.09 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|313122481|ref|YP_004038368.1| - 0.1 11.2 0.1 1.7 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313122481|ref|YP_004038368.1| - 0.1 12.4 0.3 0.2 11.5 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|313122481|ref|YP_004038368.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|313122481|ref|YP_004038368.1| - 0.26 10.9 0.7 0.53 9.9 0.7 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|313122481|ref|YP_004038368.1| - 0.28 11.4 2.0 1.5 9.1 0.2 2.6 2 1 0 2 2 2 0 AAA domain PEP_hydrolase PF09370.10 gi|313122482|ref|YP_004038369.1| - 0.062 12.5 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Gaa1 PF04114.14 gi|313122482|ref|YP_004038369.1| - 0.63 9.0 10.8 1.2 8.0 10.8 1.4 1 0 0 1 1 1 0 Gaa1-like, GPI transamidase component Pox_A9 PF04835.12 gi|313122482|ref|YP_004038369.1| - 1.9 8.7 6.4 0.17 12.1 0.7 2.2 2 0 0 2 2 2 0 A9 protein conserved region HTH_Tnp_Tc3_2 PF01498.18 gi|313122483|ref|YP_004038370.1| - 0.00024 21.3 0.3 0.00051 20.2 0.3 1.5 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.6 gi|313122483|ref|YP_004038370.1| - 0.051 13.4 1.2 0.14 12.0 1.2 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|313122483|ref|YP_004038370.1| - 0.08 13.6 0.4 0.21 12.3 0.3 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|313122483|ref|YP_004038370.1| - 0.097 12.3 0.5 2.6 7.7 0.2 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Acyl-CoA_dh_1 PF00441.24 gi|313122484|ref|YP_004038371.1| - 3.5e-49 166.9 2.9 5.2e-49 166.3 2.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|313122484|ref|YP_004038371.1| - 1.4e-31 109.5 0.2 3.6e-31 108.1 0.2 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313122484|ref|YP_004038371.1| - 9.9e-30 102.6 0.1 2.3e-29 101.4 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313122484|ref|YP_004038371.1| - 9.7e-25 87.4 8.7 1.7e-24 86.6 8.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|313122484|ref|YP_004038371.1| - 0.00049 19.8 4.7 0.0013 18.5 1.9 2.6 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.28 gi|313122485|ref|YP_004038372.1| - 8.3e-109 364.0 0.0 9.8e-109 363.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313122485|ref|YP_004038372.1| - 1.3e-22 80.6 0.6 2.6e-22 79.6 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ADP_ribosyl_GH PF03747.14 gi|313122486|ref|YP_004038373.1| - 4.3e-63 213.8 0.3 5.2e-63 213.5 0.3 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Rick_17kDa_Anti PF05433.15 gi|313122486|ref|YP_004038373.1| - 0.016 15.1 6.3 0.19 11.6 2.2 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|313122486|ref|YP_004038373.1| - 0.031 14.0 3.7 0.52 10.1 0.8 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|313122486|ref|YP_004038373.1| - 0.29 11.2 3.9 1.2 9.1 0.9 2.3 2 0 0 2 2 2 0 Glycine zipper Bacteriocin_IIc PF10439.9 gi|313122486|ref|YP_004038373.1| - 2.2 8.4 5.3 6.3 7.0 1.2 2.5 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide NPP1 PF05630.11 gi|313122489|ref|YP_004038376.1| - 0.0096 16.1 0.4 0.019 15.1 0.4 1.4 1 0 0 1 1 1 1 Necrosis inducing protein (NPP1) TFIIE-A_C PF11521.8 gi|313122489|ref|YP_004038376.1| - 0.5 10.7 2.4 1.3 9.4 2.4 1.7 1 0 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha ADH_N PF08240.12 gi|313122490|ref|YP_004038377.1| - 4.9e-26 90.8 0.8 1e-25 89.7 0.8 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|313122490|ref|YP_004038377.1| - 6.7e-22 77.9 1.4 1.1e-21 77.2 0.4 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|313122490|ref|YP_004038377.1| - 3.3e-05 23.3 0.5 5.5e-05 22.6 0.5 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|313122490|ref|YP_004038377.1| - 0.00058 20.9 0.0 0.0013 19.8 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|313122490|ref|YP_004038377.1| - 0.02 14.7 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|313122490|ref|YP_004038377.1| - 0.03 14.6 0.3 0.061 13.6 0.3 1.5 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_25 PF13649.6 gi|313122490|ref|YP_004038377.1| - 0.081 13.6 0.3 0.22 12.2 0.3 1.8 1 0 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|313122490|ref|YP_004038377.1| - 0.09 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 gi|313122490|ref|YP_004038377.1| - 0.12 13.1 0.3 0.36 11.5 0.1 1.9 2 0 0 2 2 2 0 Methyltransferase domain Spo7 PF03907.13 gi|313122491|ref|YP_004038378.1| - 0.13 11.8 0.3 0.15 11.5 0.3 1.0 1 0 0 1 1 1 0 Spo7-like protein DZR PF12773.7 gi|313122492|ref|YP_004038379.1| - 0.0087 16.1 0.5 0.012 15.6 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|313122492|ref|YP_004038379.1| - 0.039 14.1 2.1 0.088 12.9 2.1 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|313122492|ref|YP_004038379.1| - 0.09 12.7 1.8 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|313122492|ref|YP_004038379.1| - 0.11 12.8 4.5 0.62 10.4 4.6 1.9 1 1 1 2 2 2 0 zinc-ribbon WCCH PF03716.14 gi|313122492|ref|YP_004038379.1| - 0.11 12.1 0.7 0.11 12.1 0.7 2.1 2 0 0 2 2 2 0 WCCH motif PMSR PF01625.21 gi|313122493|ref|YP_004038380.1| - 2.6e-68 229.0 0.5 3e-68 228.8 0.5 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|313122493|ref|YP_004038380.1| - 0.053 13.5 1.0 0.1 12.6 0.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) NUDIX PF00293.28 gi|313122494|ref|YP_004038381.1| - 0.0023 18.0 1.8 0.0027 17.7 0.6 1.6 1 1 1 2 2 2 1 NUDIX domain MFS_1 PF07690.16 gi|313122495|ref|YP_004038382.1| - 5.6e-41 140.6 67.6 1.2e-28 100.0 33.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|313122495|ref|YP_004038382.1| - 1.2e-05 24.1 31.3 0.00043 19.0 30.6 2.9 1 1 0 1 1 1 1 MFS/sugar transport protein OATP PF03137.20 gi|313122495|ref|YP_004038382.1| - 0.0042 15.4 1.2 0.0042 15.4 1.2 1.9 1 1 0 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family LacY_symp PF01306.19 gi|313122495|ref|YP_004038382.1| - 0.25 10.1 11.3 0.011 14.6 3.8 2.3 2 1 0 3 3 3 0 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|313122495|ref|YP_004038382.1| - 0.62 8.9 11.3 0.043 12.7 5.8 1.7 1 1 1 2 2 2 0 MFS_1 like family adh_short_C2 PF13561.6 gi|313122496|ref|YP_004038383.1| - 8e-45 153.2 0.0 1.2e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313122496|ref|YP_004038383.1| - 1.2e-38 132.5 0.0 1.5e-38 132.3 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313122496|ref|YP_004038383.1| - 2e-08 34.4 0.0 4.1e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|313122496|ref|YP_004038383.1| - 0.11 12.4 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TetR_C_6 PF13977.6 gi|313122498|ref|YP_004038385.1| - 2.4e-13 50.3 0.9 3.8e-13 49.7 0.9 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|313122498|ref|YP_004038385.1| - 3.4e-13 49.1 0.2 7.2e-13 48.1 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_25 PF17933.1 gi|313122498|ref|YP_004038385.1| - 0.00015 22.0 0.0 0.00035 20.9 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|313122498|ref|YP_004038385.1| - 0.0003 21.0 0.1 0.00054 20.2 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|313122498|ref|YP_004038385.1| - 0.00039 20.7 1.1 0.00067 20.0 1.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|313122498|ref|YP_004038385.1| - 0.00067 19.7 0.0 0.00089 19.3 0.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|313122498|ref|YP_004038385.1| - 0.0033 17.5 0.1 0.0084 16.1 0.1 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 gi|313122498|ref|YP_004038385.1| - 0.028 14.4 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MarR_2 PF12802.7 gi|313122498|ref|YP_004038385.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|313122498|ref|YP_004038385.1| - 0.065 13.1 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.6 gi|313122498|ref|YP_004038385.1| - 0.065 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TetR_C_17 PF17922.1 gi|313122498|ref|YP_004038385.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain LacI PF00356.21 gi|313122498|ref|YP_004038385.1| - 0.14 12.0 0.1 0.36 10.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family UPF0122 PF04297.14 gi|313122498|ref|YP_004038385.1| - 0.21 11.9 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MatE PF01554.18 gi|313122499|ref|YP_004038386.1| - 1e-62 210.5 36.7 4.1e-38 130.6 10.8 2.5 3 0 0 3 3 3 2 MatE Pmp3 PF01679.17 gi|313122499|ref|YP_004038386.1| - 0.031 14.5 1.0 0.64 10.3 0.1 3.3 2 0 0 2 2 2 0 Proteolipid membrane potential modulator Glyco_hydro_43 PF04616.14 gi|313122499|ref|YP_004038386.1| - 0.043 13.1 0.0 0.061 12.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 Polysacc_synt_C PF14667.6 gi|313122499|ref|YP_004038386.1| - 0.62 10.1 49.5 0.05 13.7 21.7 4.9 3 2 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Peptidase_M50 PF02163.22 gi|313122500|ref|YP_004038387.1| - 1.4e-13 50.7 7.5 3.4e-07 29.8 0.3 2.5 1 1 1 2 2 2 2 Peptidase family M50 RHH_5 PF07878.11 gi|313122501|ref|YP_004038388.1| - 0.013 15.3 0.1 0.013 15.3 0.1 1.5 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Cadherin-like PF12733.7 gi|313122502|ref|YP_004038389.1| - 0.32 11.6 2.5 0.42 11.2 1.0 1.7 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain TrmB PF01978.19 gi|313122503|ref|YP_004038390.1| - 1.9e-18 66.1 0.1 2.9e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|313122503|ref|YP_004038390.1| - 0.002 18.2 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain PadR PF03551.14 gi|313122503|ref|YP_004038390.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Blo-t-5 PF11642.8 gi|313122503|ref|YP_004038390.1| - 0.099 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Mite allergen Blo t 5 SusD_RagB PF07980.11 gi|313122503|ref|YP_004038390.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 SusD family Multi_Drug_Res PF00893.19 gi|313122504|ref|YP_004038391.1| - 3.7e-26 91.6 4.0 5e-26 91.2 4.0 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|313122504|ref|YP_004038391.1| - 0.0052 17.0 7.2 0.0052 17.0 7.2 1.7 1 1 1 2 2 2 2 EamA-like transporter family DUF772 PF05598.11 gi|313122505|ref|YP_004038392.1| - 5.5e-09 35.9 0.4 1.4e-07 31.4 0.0 2.5 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|313122505|ref|YP_004038392.1| - 8.1e-08 32.2 0.2 1.5e-07 31.3 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain PhageP22-tail PF09251.10 gi|313122505|ref|YP_004038392.1| - 0.004 15.6 0.0 0.0082 14.6 0.0 1.4 2 0 0 2 2 2 1 Salmonella phage P22 tail-spike DDE_Tnp_1_2 PF13586.6 gi|313122505|ref|YP_004038392.1| - 0.013 15.9 0.1 0.053 13.9 0.1 2.0 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_IS240 PF13610.6 gi|313122508|ref|YP_004038395.1| - 3.6e-32 111.5 0.0 6.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|313122508|ref|YP_004038395.1| - 4.1e-07 29.7 0.3 8.8e-07 28.6 0.3 1.6 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|313122508|ref|YP_004038395.1| - 0.031 14.5 0.1 0.06 13.5 0.1 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|313122508|ref|YP_004038395.1| - 0.037 13.8 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease DDE_Tnp_IS66 PF03050.14 gi|313122508|ref|YP_004038395.1| - 0.05 13.1 0.1 0.11 12.0 0.1 1.5 1 1 0 1 1 1 0 Transposase IS66 family DUF3792 PF12670.7 gi|313122510|ref|YP_004038397.1| - 0.0093 16.1 3.6 0.011 15.9 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) RseC_MucC PF04246.12 gi|313122510|ref|YP_004038397.1| - 0.088 12.8 1.9 0.092 12.7 1.9 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3043 PF11241.8 gi|313122510|ref|YP_004038397.1| - 0.15 12.1 1.3 0.16 12.0 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) FeoB_C PF07664.12 gi|313122510|ref|YP_004038397.1| - 0.23 11.2 5.3 0.46 10.2 0.5 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus LapA_dom PF06305.11 gi|313122510|ref|YP_004038397.1| - 0.58 10.0 4.9 0.48 10.3 2.1 2.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Myco_arth_vir_N PF09610.10 gi|313122510|ref|YP_004038397.1| - 8.1 6.6 12.8 31 4.7 0.4 3.7 3 1 1 4 4 4 0 Mycoplasma virulence signal region (Myco_arth_vir_N) SBP_bac_5 PF00496.22 gi|313122512|ref|YP_004038399.1| - 3.3e-65 220.5 0.8 3.9e-65 220.3 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|313122513|ref|YP_004038400.1| - 8.7e-38 129.9 10.7 8.7e-38 129.9 10.7 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GTP_EFTU_D4 PF14578.6 gi|313122513|ref|YP_004038400.1| - 0.15 12.0 0.3 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Elongation factor Tu domain 4 Renin_r PF07850.14 gi|313122513|ref|YP_004038400.1| - 0.38 11.4 0.1 0.38 11.4 0.1 2.7 3 1 0 3 3 3 0 Renin receptor-like protein DUF3561 PF12084.8 gi|313122513|ref|YP_004038400.1| - 0.41 10.7 5.0 0.45 10.6 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3561) BPD_transp_1 PF00528.22 gi|313122514|ref|YP_004038401.1| - 5.2e-31 107.8 9.7 5.2e-31 107.8 9.7 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313122514|ref|YP_004038401.1| - 5e-06 26.4 0.2 5e-06 26.4 0.2 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|313122515|ref|YP_004038402.1| - 1.6e-27 96.7 0.0 2.2e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122515|ref|YP_004038402.1| - 3.1e-15 56.4 0.3 6e-15 55.5 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313122515|ref|YP_004038402.1| - 4.6e-07 30.0 0.7 0.00012 22.0 0.7 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313122515|ref|YP_004038402.1| - 1.5e-05 25.3 0.2 0.0014 19.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313122515|ref|YP_004038402.1| - 0.00065 20.1 1.1 0.0026 18.2 1.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|313122515|ref|YP_004038402.1| - 0.0091 15.5 0.2 0.22 11.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313122515|ref|YP_004038402.1| - 0.013 15.2 0.1 0.026 14.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HetR_C PF18460.1 gi|313122515|ref|YP_004038402.1| - 0.031 14.2 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain AAA_7 PF12775.7 gi|313122515|ref|YP_004038402.1| - 0.091 12.3 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AIG1 PF04548.16 gi|313122515|ref|YP_004038402.1| - 0.21 10.9 0.2 0.5 9.7 0.0 1.7 2 0 0 2 2 2 0 AIG1 family ABC_tran PF00005.27 gi|313122516|ref|YP_004038403.1| - 4.8e-30 104.9 0.0 6.5e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122516|ref|YP_004038403.1| - 7.6e-20 71.2 1.3 1.5e-19 70.3 1.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313122516|ref|YP_004038403.1| - 5.2e-08 33.1 0.9 7.1e-06 26.0 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313122516|ref|YP_004038403.1| - 5.3e-07 30.2 0.7 1.4e-06 28.8 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122516|ref|YP_004038403.1| - 1.5e-05 25.3 0.0 3.3e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313122516|ref|YP_004038403.1| - 0.0023 17.9 0.0 0.0052 16.7 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_5 PF07728.14 gi|313122516|ref|YP_004038403.1| - 0.0044 17.0 0.4 0.2 11.7 0.2 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|313122516|ref|YP_004038403.1| - 0.013 15.9 0.1 0.11 12.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|313122516|ref|YP_004038403.1| - 0.02 14.6 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|313122516|ref|YP_004038403.1| - 0.032 14.6 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|313122516|ref|YP_004038403.1| - 0.033 14.3 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|313122516|ref|YP_004038403.1| - 0.034 14.4 0.1 0.1 12.8 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313122516|ref|YP_004038403.1| - 0.035 13.7 0.1 0.075 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|313122516|ref|YP_004038403.1| - 0.039 13.6 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.21 gi|313122516|ref|YP_004038403.1| - 0.054 12.9 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|313122516|ref|YP_004038403.1| - 0.055 13.2 0.3 1.9 8.2 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|313122516|ref|YP_004038403.1| - 0.057 12.7 0.1 0.11 11.7 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|313122516|ref|YP_004038403.1| - 0.088 13.0 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|313122516|ref|YP_004038403.1| - 0.09 11.4 0.0 0.3 9.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313122516|ref|YP_004038403.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|313122516|ref|YP_004038403.1| - 0.12 13.0 0.0 0.21 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|313122516|ref|YP_004038403.1| - 0.13 12.1 0.2 0.24 11.3 0.2 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.12 gi|313122516|ref|YP_004038403.1| - 0.15 11.9 0.2 0.29 11.0 0.2 1.5 1 0 0 1 1 1 0 NACHT domain CoaE PF01121.20 gi|313122516|ref|YP_004038403.1| - 0.19 11.4 0.1 2.1 8.0 0.1 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_7 PF12775.7 gi|313122516|ref|YP_004038403.1| - 0.21 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|313122516|ref|YP_004038403.1| - 0.21 10.7 0.1 0.35 10.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Pyr_redox_2 PF07992.14 gi|313122517|ref|YP_004038404.1| - 5.1e-11 42.4 1.1 1.2e-05 24.8 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313122517|ref|YP_004038404.1| - 2.8e-07 30.0 0.3 0.0041 16.3 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|313122517|ref|YP_004038404.1| - 2.7e-06 27.5 0.2 5.9e-06 26.4 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|313122517|ref|YP_004038404.1| - 3.2e-06 26.6 0.1 0.093 12.0 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|313122517|ref|YP_004038404.1| - 9.3e-06 24.6 0.0 0.00011 21.1 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|313122517|ref|YP_004038404.1| - 7.5e-05 22.0 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|313122517|ref|YP_004038404.1| - 0.00031 20.1 0.0 0.0011 18.2 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|313122517|ref|YP_004038404.1| - 0.00086 18.8 0.2 0.0018 17.7 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|313122517|ref|YP_004038404.1| - 0.0017 18.0 1.2 0.013 15.1 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|313122517|ref|YP_004038404.1| - 0.0056 16.0 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Thi4 family 2-ph_phosp PF04029.14 gi|313122517|ref|YP_004038404.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase NAD_binding_9 PF13454.6 gi|313122517|ref|YP_004038404.1| - 0.046 13.7 0.8 1.5 8.8 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding ApbA PF02558.16 gi|313122517|ref|YP_004038404.1| - 0.09 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|313122517|ref|YP_004038404.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|313122518|ref|YP_004038405.1| - 1.2e-16 60.8 1.7 2.7e-16 59.6 1.7 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|313122518|ref|YP_004038405.1| - 0.019 13.8 0.0 0.031 13.1 0.0 1.3 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) DUF3234 PF11572.8 gi|313122518|ref|YP_004038405.1| - 0.14 12.4 0.2 4.2 7.6 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3234) Usp PF00582.26 gi|313122519|ref|YP_004038406.1| - 3.5e-07 30.8 0.6 6.4e-07 30.0 0.6 1.4 1 1 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.27 gi|313122520|ref|YP_004038407.1| - 1.5e-29 103.2 0.0 2.1e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122520|ref|YP_004038407.1| - 3.9e-14 52.9 0.2 6.9e-14 52.1 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|313122520|ref|YP_004038407.1| - 0.00093 19.5 0.7 0.017 15.4 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|313122520|ref|YP_004038407.1| - 0.015 15.1 0.4 4 7.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|313122520|ref|YP_004038407.1| - 0.017 14.3 0.1 0.027 13.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.14 gi|313122520|ref|YP_004038407.1| - 0.062 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|313122520|ref|YP_004038407.1| - 0.067 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|313122520|ref|YP_004038407.1| - 0.077 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PduV-EutP PF10662.9 gi|313122520|ref|YP_004038407.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|313122520|ref|YP_004038407.1| - 0.14 12.5 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313122520|ref|YP_004038407.1| - 0.16 12.4 0.2 0.34 11.3 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|313122520|ref|YP_004038407.1| - 0.22 10.8 0.0 0.67 9.2 0.0 1.7 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.27 gi|313122521|ref|YP_004038408.1| - 1.3e-23 84.0 0.0 1.8e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313122521|ref|YP_004038408.1| - 4.2e-20 72.0 0.2 8.1e-20 71.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313122521|ref|YP_004038408.1| - 8.4e-10 38.9 0.1 9.7e-07 28.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313122521|ref|YP_004038408.1| - 0.00094 18.7 1.0 1 8.8 0.1 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313122521|ref|YP_004038408.1| - 0.0016 18.8 0.2 0.0034 17.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122521|ref|YP_004038408.1| - 0.0027 18.0 0.0 0.011 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|313122521|ref|YP_004038408.1| - 0.012 15.3 0.2 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|313122521|ref|YP_004038408.1| - 0.026 14.3 0.1 0.051 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313122521|ref|YP_004038408.1| - 0.028 14.9 0.0 0.044 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313122521|ref|YP_004038408.1| - 0.069 13.2 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|313122521|ref|YP_004038408.1| - 0.088 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|313122521|ref|YP_004038408.1| - 0.098 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|313122521|ref|YP_004038408.1| - 0.15 11.4 0.1 0.33 10.3 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|313122521|ref|YP_004038408.1| - 0.57 9.9 0.0 0.57 9.9 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.22 gi|313122522|ref|YP_004038409.1| - 2.3e-23 82.9 17.1 2.3e-23 82.9 17.1 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313122523|ref|YP_004038410.1| - 6.9e-36 123.7 11.5 6.9e-36 123.7 11.5 2.0 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Fumarate_red_C PF02300.17 gi|313122523|ref|YP_004038410.1| - 0.81 9.8 0.0 0.81 9.8 0.0 3.1 3 1 0 4 4 4 0 Fumarate reductase subunit C SBP_bac_5 PF00496.22 gi|313122524|ref|YP_004038411.1| - 9.8e-38 130.1 5.6 1.5e-37 129.5 5.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313122524|ref|YP_004038411.1| - 0.12 12.2 1.1 0.2 11.5 1.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF565 PF04483.12 gi|313122525|ref|YP_004038412.1| - 0.081 13.5 0.5 0.71 10.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF565) HEAT_2 PF13646.6 gi|313122526|ref|YP_004038413.1| - 3.5e-16 59.4 18.9 1.5e-06 28.5 0.3 4.3 2 2 3 5 5 5 5 HEAT repeats HEAT PF02985.22 gi|313122526|ref|YP_004038413.1| - 9.9e-11 41.0 7.5 0.52 10.7 0.1 5.8 5 0 0 5 5 5 4 HEAT repeat Cnd1 PF12717.7 gi|313122526|ref|YP_004038413.1| - 2.4e-08 34.2 0.7 4.5e-05 23.6 0.4 2.6 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|313122526|ref|YP_004038413.1| - 4.9e-06 25.4 2.6 0.00055 18.6 0.6 2.1 1 1 0 2 2 2 2 Adaptin N terminal region HEAT_EZ PF13513.6 gi|313122526|ref|YP_004038413.1| - 1.1e-05 25.8 16.3 0.19 12.3 0.6 4.7 3 2 1 4 4 4 4 HEAT-like repeat Nipped-B_C PF12830.7 gi|313122526|ref|YP_004038413.1| - 0.00013 21.9 2.6 0.026 14.5 0.2 3.1 3 0 0 3 3 3 1 Sister chromatid cohesion C-terminus HEAT_PBS PF03130.16 gi|313122526|ref|YP_004038413.1| - 0.00092 19.7 9.9 1.2 10.0 0.1 6.1 6 2 0 6 6 6 2 PBS lyase HEAT-like repeat TINF2_N PF14973.6 gi|313122526|ref|YP_004038413.1| - 0.058 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus Arm PF00514.23 gi|313122526|ref|YP_004038413.1| - 0.093 12.8 4.1 0.11 12.6 0.0 3.1 4 0 0 4 4 4 0 Armadillo/beta-catenin-like repeat DUF5578 PF17741.1 gi|313122526|ref|YP_004038413.1| - 0.16 11.3 0.1 0.4 10.1 0.0 1.6 1 1 1 2 2 2 0 Family of unknown function (DUF5578) MR_MLE_C PF13378.6 gi|313122527|ref|YP_004038414.1| - 2.7e-60 203.6 0.0 3.4e-60 203.3 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|313122527|ref|YP_004038414.1| - 7.8e-27 93.8 0.0 1.6e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NanE PF04131.14 gi|313122527|ref|YP_004038414.1| - 0.046 12.9 0.1 0.086 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF4777 PF16007.5 gi|313122527|ref|YP_004038414.1| - 0.16 12.2 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) IclR PF01614.18 gi|313122528|ref|YP_004038415.1| - 2.5e-23 82.3 0.0 3.7e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313122528|ref|YP_004038415.1| - 7.9e-13 48.0 0.3 9.6e-12 44.5 0.2 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313122528|ref|YP_004038415.1| - 1e-06 28.7 0.0 2.4e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|313122528|ref|YP_004038415.1| - 1.7e-06 27.8 0.0 7.5e-06 25.7 0.0 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|313122528|ref|YP_004038415.1| - 1.9e-06 27.7 0.0 4.3e-06 26.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|313122528|ref|YP_004038415.1| - 2.9e-05 23.9 0.0 5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313122528|ref|YP_004038415.1| - 9.3e-05 21.9 0.0 0.0002 20.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|313122528|ref|YP_004038415.1| - 0.00042 20.2 0.0 0.00098 19.0 0.0 1.7 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|313122528|ref|YP_004038415.1| - 0.0033 17.6 0.0 0.0064 16.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|313122528|ref|YP_004038415.1| - 0.0096 16.3 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|313122528|ref|YP_004038415.1| - 0.021 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain z-alpha PF02295.17 gi|313122528|ref|YP_004038415.1| - 0.022 14.8 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_23 PF13384.6 gi|313122528|ref|YP_004038415.1| - 0.023 14.5 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_45 PF14947.6 gi|313122528|ref|YP_004038415.1| - 0.036 14.1 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|313122528|ref|YP_004038415.1| - 0.051 13.3 0.1 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Acetyltransf_1 PF00583.25 gi|313122529|ref|YP_004038416.1| - 1.2e-09 38.4 0.0 2.8e-07 30.8 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|313122529|ref|YP_004038416.1| - 5.8e-05 23.0 0.0 0.00012 21.9 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|313122529|ref|YP_004038416.1| - 0.00074 19.9 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|313122529|ref|YP_004038416.1| - 0.0067 16.4 0.0 0.027 14.4 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Phenol_hyd_sub PF06099.11 gi|313122530|ref|YP_004038417.1| - 0.036 14.1 0.5 0.069 13.2 0.1 1.6 1 1 1 2 2 2 0 Phenol hydroxylase subunit Ferritin PF00210.24 gi|313122531|ref|YP_004038418.1| - 1.4e-30 106.1 6.8 1.6e-30 105.9 6.8 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2959 PF11172.8 gi|313122531|ref|YP_004038418.1| - 0.023 14.8 0.4 0.072 13.2 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Osmo_CC PF08946.10 gi|313122531|ref|YP_004038418.1| - 0.089 13.1 0.5 0.089 13.1 0.5 3.3 3 0 0 3 3 3 0 Osmosensory transporter coiled coil DUF1451 PF07295.11 gi|313122531|ref|YP_004038418.1| - 0.82 9.7 5.4 3.3 7.7 0.9 2.3 1 1 1 2 2 2 0 Zinc-ribbon containing domain PAS_9 PF13426.7 gi|313122535|ref|YP_004038422.1| - 2.8e-44 149.6 0.5 1e-19 70.7 0.1 3.6 3 0 0 3 3 3 3 PAS domain BAT PF15915.5 gi|313122535|ref|YP_004038422.1| - 1.9e-40 138.3 4.1 5.8e-40 136.7 4.1 1.9 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|313122535|ref|YP_004038422.1| - 1.6e-35 121.5 1.9 2.5e-16 59.7 0.1 3.3 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|313122535|ref|YP_004038422.1| - 1.5e-31 108.9 8.5 7.6e-14 51.9 0.1 3.9 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|313122535|ref|YP_004038422.1| - 4.1e-25 87.9 0.4 8.1e-11 42.1 0.1 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|313122535|ref|YP_004038422.1| - 1.7e-23 82.2 0.1 4.1e-08 33.1 0.0 3.7 3 0 0 3 3 3 3 PAS domain HTH_10 PF04967.12 gi|313122535|ref|YP_004038422.1| - 4.2e-18 64.9 0.0 8.8e-18 63.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|313122535|ref|YP_004038422.1| - 8.3e-17 61.8 0.6 5.4e-16 59.2 0.2 2.5 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|313122535|ref|YP_004038422.1| - 1.1e-06 29.3 0.0 3.2e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|313122535|ref|YP_004038422.1| - 4.1e-05 23.9 0.0 8.9e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|313122535|ref|YP_004038422.1| - 0.00014 22.0 1.4 0.29 11.3 0.0 3.6 3 1 0 3 3 3 2 PAS fold PAS_10 PF13596.6 gi|313122535|ref|YP_004038422.1| - 0.0031 18.1 0.0 2 9.0 0.0 3.2 2 0 0 2 2 2 1 PAS domain Sigma70_r4 PF04545.16 gi|313122535|ref|YP_004038422.1| - 0.021 14.3 2.3 0.14 11.7 0.0 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 PAS_12 PF18095.1 gi|313122535|ref|YP_004038422.1| - 0.03 14.0 0.0 3.3 7.3 0.0 2.7 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HTH_22 PF13309.6 gi|313122535|ref|YP_004038422.1| - 0.14 12.3 0.0 0.42 10.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain FAD_binding_4 PF01565.23 gi|313122536|ref|YP_004038423.1| - 1.8e-37 128.2 3.1 2.8e-37 127.6 3.1 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|313122536|ref|YP_004038423.1| - 5.3e-08 32.8 0.1 1.1e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 Berberine and berberine like DUF4968 PF16338.5 gi|313122537|ref|YP_004038424.1| - 5.7e-07 29.8 0.8 5.1 7.5 0.0 5.0 1 1 4 5 5 5 3 Domain of unknown function (DUF4968) HtaA PF04213.13 gi|313122537|ref|YP_004038424.1| - 0.00098 19.6 0.2 1 9.8 0.0 2.7 1 1 1 2 2 2 2 Htaa DUF2807 PF10988.8 gi|313122537|ref|YP_004038424.1| - 0.0067 16.2 2.4 1.2 8.8 0.1 2.9 1 1 1 2 2 2 2 Putative auto-transporter adhesin, head GIN domain DUF945 PF06097.11 gi|313122537|ref|YP_004038424.1| - 0.0079 15.3 0.9 0.046 12.8 0.9 2.0 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF945) FecR PF04773.13 gi|313122537|ref|YP_004038424.1| - 0.019 15.6 0.0 42 4.9 0.1 3.8 1 1 3 4 4 4 0 FecR protein PCC_BT PF18140.1 gi|313122537|ref|YP_004038424.1| - 0.11 12.9 1.1 21 5.5 1.1 3.6 1 1 0 1 1 1 0 Propionyl-coenzyme A carboxylase BT domain HSP20 PF00011.21 gi|313122537|ref|YP_004038424.1| - 0.13 12.4 6.8 0.5 10.5 0.8 3.3 1 1 3 4 4 4 0 Hsp20/alpha crystallin family CS PF04969.16 gi|313122537|ref|YP_004038424.1| - 0.17 12.9 1.4 12 7.0 0.1 3.4 1 1 1 2 2 2 0 CS domain MinE PF03776.14 gi|313122537|ref|YP_004038424.1| - 0.65 10.0 4.8 10 6.2 0.1 3.9 2 2 0 3 3 3 0 Septum formation topological specificity factor MinE GNAT_like PF18407.1 gi|313122537|ref|YP_004038424.1| - 2.2 8.7 4.7 15 6.0 0.1 3.8 3 2 0 3 3 3 0 GCN5-related N-acetyltransferase like domain Big_3 PF07523.12 gi|313122537|ref|YP_004038424.1| - 3.4 8.0 9.2 0.64 10.4 0.2 3.4 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) NmrA PF05368.13 gi|313122538|ref|YP_004038425.1| - 4.1e-13 49.4 0.0 1.2e-12 47.9 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|313122538|ref|YP_004038425.1| - 4.7e-11 42.9 0.0 1.5e-10 41.3 0.0 1.8 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|313122538|ref|YP_004038425.1| - 2.9e-09 36.8 0.0 9.5e-08 31.8 0.0 2.1 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313122538|ref|YP_004038425.1| - 0.0001 21.4 0.0 0.00018 20.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family HTH_IclR PF09339.10 gi|313122539|ref|YP_004038426.1| - 1.4e-05 24.8 0.0 3.9e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|313122539|ref|YP_004038426.1| - 3.7e-05 23.5 0.0 0.00011 22.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|313122539|ref|YP_004038426.1| - 0.00024 21.5 0.0 0.00072 20.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|313122539|ref|YP_004038426.1| - 0.00089 19.1 0.1 0.002 18.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|313122539|ref|YP_004038426.1| - 0.0029 17.5 0.0 0.007 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family NBP1 PF08537.10 gi|313122539|ref|YP_004038426.1| - 0.013 14.9 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 HTH_20 PF12840.7 gi|313122539|ref|YP_004038426.1| - 0.017 15.2 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|313122539|ref|YP_004038426.1| - 0.017 14.6 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|313122539|ref|YP_004038426.1| - 0.018 14.7 0.0 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|313122539|ref|YP_004038426.1| - 0.024 14.5 0.0 0.059 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4363 PF14276.6 gi|313122539|ref|YP_004038426.1| - 0.024 14.7 0.4 0.074 13.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) Glyco_hydro_15 PF00723.21 gi|313122539|ref|YP_004038426.1| - 0.072 11.8 0.1 0.099 11.4 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 15 SesA PF17107.5 gi|313122539|ref|YP_004038426.1| - 0.099 12.8 0.4 0.19 11.9 0.2 1.5 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Rx_N PF18052.1 gi|313122539|ref|YP_004038426.1| - 0.13 12.5 0.8 0.26 11.6 0.8 1.4 1 0 0 1 1 1 0 Rx N-terminal domain TctB PF07331.11 gi|313122540|ref|YP_004038427.1| - 0.12 12.7 12.4 0.58 10.4 12.8 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family ADH_zinc_N_2 PF13602.6 gi|313122541|ref|YP_004038428.1| - 7.3e-27 95.0 0.0 1.2e-26 94.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|313122541|ref|YP_004038428.1| - 1.6e-17 63.7 0.0 5.1e-17 62.1 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|313122541|ref|YP_004038428.1| - 3.9e-08 33.1 0.0 2.4e-07 30.6 0.0 2.2 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain DUF2855 PF11017.8 gi|313122541|ref|YP_004038428.1| - 0.004 16.9 0.0 0.006 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2855) ADH_N_2 PF16884.5 gi|313122541|ref|YP_004038428.1| - 0.13 12.2 0.0 0.44 10.5 0.0 1.9 2 0 0 2 2 2 0 N-terminal domain of oxidoreductase BAT PF15915.5 gi|313122543|ref|YP_004038430.1| - 1.1e-40 139.1 7.4 1.1e-40 139.1 7.4 2.9 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|313122543|ref|YP_004038430.1| - 2.4e-19 68.9 0.0 5.7e-19 67.7 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|313122543|ref|YP_004038430.1| - 3.9e-18 66.1 1.5 3.8e-11 43.4 0.1 2.8 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.10 gi|313122543|ref|YP_004038430.1| - 1.3e-17 64.0 4.7 8.4e-10 38.9 0.2 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|313122543|ref|YP_004038430.1| - 4.5e-17 62.1 0.5 6.2e-13 48.7 0.1 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313122543|ref|YP_004038430.1| - 9.9e-16 57.9 0.0 9.3e-13 48.3 0.1 2.8 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|313122543|ref|YP_004038430.1| - 8e-12 44.9 0.4 6.8e-07 29.2 0.1 3.5 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|313122543|ref|YP_004038430.1| - 4.4e-06 26.8 4.5 0.0036 17.4 0.1 3.7 4 1 0 4 4 3 2 PAS fold GAF PF01590.26 gi|313122543|ref|YP_004038430.1| - 0.00018 22.2 0.1 0.14 12.8 0.0 3.0 3 0 0 3 3 3 1 GAF domain HTH_5 PF01022.20 gi|313122543|ref|YP_004038430.1| - 0.0013 18.6 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313122543|ref|YP_004038430.1| - 0.0022 18.0 0.0 0.01 15.9 0.0 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain GAF_3 PF13492.6 gi|313122543|ref|YP_004038430.1| - 0.014 15.8 0.0 2.8 8.3 0.0 3.1 2 0 0 2 2 2 0 GAF domain PAS_3 PF08447.12 gi|313122543|ref|YP_004038430.1| - 0.063 13.6 0.0 0.36 11.1 0.0 2.2 2 0 0 2 2 2 0 PAS fold MLTR_LBD PF17765.1 gi|313122543|ref|YP_004038430.1| - 6.7 6.8 10.4 0.7 10.0 0.2 3.5 3 1 1 4 4 3 0 MmyB-like transcription regulator ligand binding domain HalOD1 PF18545.1 gi|313122544|ref|YP_004038431.1| - 3.9e-17 62.3 0.1 4.4e-17 62.1 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 N6_Mtase PF02384.16 gi|313122545|ref|YP_004038432.1| - 1.9e-06 27.4 0.0 0.0068 15.7 0.0 2.6 2 1 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|313122545|ref|YP_004038432.1| - 8.8e-05 23.0 0.0 0.00015 22.2 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.7 gi|313122545|ref|YP_004038432.1| - 0.0023 18.0 0.0 0.0063 16.6 0.0 1.7 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Glyco_hydro_88 PF07470.13 gi|313122546|ref|YP_004038433.1| - 3.4e-07 29.7 0.7 0.054 12.6 0.0 3.3 2 1 1 3 3 3 3 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 gi|313122546|ref|YP_004038433.1| - 0.00013 21.6 0.9 0.002 17.7 0.0 2.4 2 0 0 2 2 2 1 Glycosyl hydrolase family 76 DUF1616 PF07760.11 gi|313122548|ref|YP_004038435.1| - 7.3e-77 258.6 5.6 8.8e-77 258.4 5.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2976 PF11190.8 gi|313122548|ref|YP_004038435.1| - 0.02 14.7 0.3 0.02 14.7 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) Transglut_C PF00927.22 gi|313122548|ref|YP_004038435.1| - 0.048 13.8 0.0 0.087 13.0 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain ABC_tran PF00005.27 gi|313117185|ref|YP_004044168.1| - 2.1e-25 89.8 0.0 3.4e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117185|ref|YP_004044168.1| - 2.4e-14 53.9 0.2 2.6e-08 34.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313117185|ref|YP_004044168.1| - 2.4e-06 28.2 0.0 6.1e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|313117185|ref|YP_004044168.1| - 0.00021 21.0 0.1 0.00047 19.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313117185|ref|YP_004044168.1| - 0.0012 18.3 0.0 0.61 9.5 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|313117185|ref|YP_004044168.1| - 0.0022 18.5 0.0 0.0033 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|313117185|ref|YP_004044168.1| - 0.023 13.7 0.0 0.038 13.0 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_10 PF12846.7 gi|313117185|ref|YP_004044168.1| - 0.048 12.6 0.0 0.28 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_15 PF13175.6 gi|313117185|ref|YP_004044168.1| - 0.064 13.0 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain SicP-binding PF09119.10 gi|313117185|ref|YP_004044168.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 SicP binding RsgA_GTPase PF03193.16 gi|313117185|ref|YP_004044168.1| - 0.17 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|313117185|ref|YP_004044168.1| - 0.19 11.1 0.0 4.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC2_membrane_2 PF12679.7 gi|313117186|ref|YP_004044169.1| - 8.3e-23 81.1 5.9 9.3e-22 77.6 5.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313117186|ref|YP_004044169.1| - 9.5e-05 22.0 1.2 0.00017 21.2 1.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313117186|ref|YP_004044169.1| - 0.01 15.8 2.2 0.01 15.8 2.2 1.5 2 0 0 2 2 2 0 ABC-2 family transporter protein DDE_Tnp_IS240 PF13610.6 gi|313117188|ref|YP_004044171.1| - 3.5e-12 46.8 0.0 4.3e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 DDE domain DUF5518 PF17647.1 gi|313117189|ref|YP_004044172.1| - 2.1e-09 37.6 27.7 2.4e-09 37.3 27.7 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF3792 PF12670.7 gi|313117189|ref|YP_004044172.1| - 0.0064 16.6 11.3 0.0091 16.2 11.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3792) ALMT PF11744.8 gi|313117189|ref|YP_004044172.1| - 0.093 11.5 1.7 0.096 11.5 1.7 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter YbjM PF11045.8 gi|313117189|ref|YP_004044172.1| - 0.11 12.7 8.5 0.28 11.4 4.8 2.1 1 1 1 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae MgtC PF02308.16 gi|313117189|ref|YP_004044172.1| - 0.13 12.6 11.4 0.06 13.7 8.9 1.7 2 0 0 2 2 2 0 MgtC family FadA PF09403.10 gi|313117191|ref|YP_004044174.1| - 0.16 12.4 3.5 0.22 12.1 2.2 1.7 2 0 0 2 2 2 0 Adhesion protein FadA Usp PF00582.26 gi|313117195|ref|YP_004044178.1| - 1.9e-31 109.4 0.0 2.1e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|313117195|ref|YP_004044178.1| - 0.034 14.1 0.0 0.051 13.6 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase Gram_pos_anchor PF00746.21 gi|313117197|ref|YP_004044180.1| - 0.21 11.6 0.6 0.24 11.4 0.6 1.1 1 0 0 1 1 1 0 LPXTG cell wall anchor motif ABC2_membrane_2 PF12679.7 gi|313117198|ref|YP_004044181.1| - 4.3e-10 39.3 10.1 5.2e-10 39.1 10.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313117198|ref|YP_004044181.1| - 0.00049 20.1 4.3 0.00049 20.1 4.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313117198|ref|YP_004044181.1| - 0.27 10.3 12.4 0.42 9.7 12.4 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Glycos_transf_1 PF00534.20 gi|313117199|ref|YP_004044182.1| - 1.6e-17 63.6 0.0 7.3e-17 61.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313117199|ref|YP_004044182.1| - 1.9e-15 57.3 0.0 3.4e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|313117199|ref|YP_004044182.1| - 2.6e-13 50.5 0.0 3.6e-12 46.9 0.0 2.4 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|313117199|ref|YP_004044182.1| - 6.7e-09 36.0 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|313117199|ref|YP_004044182.1| - 4.6e-07 30.4 0.0 8.6e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF3325 PF11804.8 gi|313117202|ref|YP_004044185.1| - 0.11 12.7 4.8 0.22 11.7 4.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) DUF3784 PF12650.7 gi|313117202|ref|YP_004044185.1| - 1.7 8.9 5.4 0.55 10.5 0.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) ABC_tran PF00005.27 gi|313117203|ref|YP_004044186.1| - 5.9e-28 98.1 0.0 9.8e-28 97.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117203|ref|YP_004044186.1| - 3.1e-11 43.7 0.2 2.9e-06 27.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|313117203|ref|YP_004044186.1| - 1.6e-05 25.5 0.0 4.5e-05 24.0 0.0 1.7 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|313117203|ref|YP_004044186.1| - 6.9e-05 22.5 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313117203|ref|YP_004044186.1| - 0.00011 21.7 0.0 0.0048 16.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|313117203|ref|YP_004044186.1| - 0.0029 17.4 0.0 0.25 11.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|313117203|ref|YP_004044186.1| - 0.0087 16.2 0.0 0.035 14.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain MukB PF04310.12 gi|313117203|ref|YP_004044186.1| - 0.014 15.3 0.1 0.021 14.6 0.1 1.4 1 1 0 1 1 1 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|313117203|ref|YP_004044186.1| - 0.02 14.8 0.2 0.056 13.3 0.1 1.8 2 1 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|313117203|ref|YP_004044186.1| - 0.038 13.6 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|313117203|ref|YP_004044186.1| - 0.04 14.3 0.0 0.073 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_PrkA PF08298.11 gi|313117203|ref|YP_004044186.1| - 0.053 12.4 0.0 0.099 11.5 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain AAA_30 PF13604.6 gi|313117203|ref|YP_004044186.1| - 0.072 12.8 0.1 0.16 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|313117203|ref|YP_004044186.1| - 0.12 11.6 0.0 0.28 10.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC2_membrane_5 PF13346.6 gi|313117204|ref|YP_004044187.1| - 3.2e-05 23.6 4.4 3.2e-05 23.6 4.4 3.0 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313117204|ref|YP_004044187.1| - 0.00021 20.5 9.2 0.00021 20.5 9.2 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein Bac_luciferase PF00296.20 gi|313117206|ref|YP_004044189.1| - 6.1e-31 108.0 0.4 1.3e-25 90.5 0.0 2.4 2 1 0 2 2 2 2 Luciferase-like monooxygenase Hexapep PF00132.24 gi|313117207|ref|YP_004044190.1| - 5.7e-15 54.4 10.8 1.3e-06 27.9 1.0 3.5 2 2 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|313117207|ref|YP_004044190.1| - 1.6e-06 27.7 10.5 1e-05 25.2 1.1 4.1 3 1 1 4 4 4 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|313117207|ref|YP_004044190.1| - 0.0016 17.5 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 L-fucokinase AbrB-like PF14250.6 gi|313117208|ref|YP_004044191.1| - 0.053 13.6 0.0 0.08 13.0 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator Phasin_2 PF09361.10 gi|313117209|ref|YP_004044192.1| - 0.00058 20.1 3.9 0.15 12.3 0.3 2.3 1 1 1 2 2 2 2 Phasin protein GCK PF07802.11 gi|313117209|ref|YP_004044192.1| - 0.029 14.8 1.0 0.095 13.1 0.3 2.1 2 0 0 2 2 2 0 GCK domain DUF2383 PF09537.10 gi|313117209|ref|YP_004044192.1| - 0.036 14.4 0.5 0.065 13.6 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) PMC2NT PF08066.12 gi|313117209|ref|YP_004044192.1| - 0.37 11.5 4.4 0.25 12.0 1.2 2.0 2 0 0 2 2 2 0 PMC2NT (NUC016) domain PhaP_Bmeg PF09602.10 gi|313117209|ref|YP_004044192.1| - 1.5 8.7 7.2 3.1 7.7 0.9 2.5 1 1 0 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) PHA_synth_III_E PF09712.10 gi|313117210|ref|YP_004044193.1| - 4.3e-10 39.2 1.0 1.4e-09 37.5 0.3 1.9 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.11 gi|313117210|ref|YP_004044193.1| - 0.026 14.5 0.3 0.076 13.0 0.1 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) FliD_C PF07195.12 gi|313117210|ref|YP_004044193.1| - 0.044 13.2 0.0 0.19 11.1 0.0 1.8 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Nsp1_C PF05064.13 gi|313117210|ref|YP_004044193.1| - 0.064 13.1 0.9 6.2 6.6 0.1 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region Abhydrolase_1 PF00561.20 gi|313117211|ref|YP_004044194.1| - 2.8e-24 86.2 0.0 5.1e-24 85.3 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|313117211|ref|YP_004044194.1| - 8.5e-13 48.3 0.0 1.5e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DUF3141 PF11339.8 gi|313117211|ref|YP_004044194.1| - 5.9e-10 38.2 0.0 3.1e-09 35.8 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) HHH_5 PF14520.6 gi|313117211|ref|YP_004044194.1| - 3.9e-09 37.0 0.0 8.1e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain Hydrolase_4 PF12146.8 gi|313117211|ref|YP_004044194.1| - 2.3e-08 33.6 0.0 0.00029 20.2 0.0 2.5 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|313117211|ref|YP_004044194.1| - 1.9e-05 24.4 0.0 0.0046 16.5 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|313117211|ref|YP_004044194.1| - 6.4e-05 22.7 0.0 0.0099 15.6 0.0 2.3 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Abhydrolase_5 PF12695.7 gi|313117211|ref|YP_004044194.1| - 9.6e-05 22.2 0.0 0.16 11.7 0.0 2.3 2 0 0 2 2 2 2 Alpha/beta hydrolase family DNA_pol_lambd_f PF10391.9 gi|313117211|ref|YP_004044194.1| - 0.00028 20.6 0.0 0.0008 19.2 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|313117211|ref|YP_004044194.1| - 0.0013 18.9 0.2 0.016 15.4 0.2 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.11 gi|313117211|ref|YP_004044194.1| - 0.0019 17.7 0.0 0.0055 16.2 0.0 1.8 2 0 0 2 2 2 1 PHB de-polymerase C-terminus Cdd1 PF11731.8 gi|313117211|ref|YP_004044194.1| - 0.0063 16.7 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus RNAse_A_bac PF18431.1 gi|313117211|ref|YP_004044194.1| - 0.027 15.4 0.2 0.1 13.6 0.2 1.9 1 0 0 1 1 1 0 Bacterial CdiA-CT RNAse A domain PGAP1 PF07819.13 gi|313117211|ref|YP_004044194.1| - 0.093 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein HTH_Tnp_1 PF01527.20 gi|313117211|ref|YP_004044194.1| - 0.12 12.7 0.9 0.23 11.8 0.0 2.0 2 0 0 2 2 2 0 Transposase CcmH PF03918.14 gi|313117212|ref|YP_004044195.1| - 0.063 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein MaoC_dehydratas PF01575.19 gi|313117213|ref|YP_004044196.1| - 6.5e-19 67.7 0.0 9.5e-19 67.2 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|313117213|ref|YP_004044196.1| - 2.8e-07 30.7 0.0 3.2e-06 27.3 0.0 2.3 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase C1_1 PF00130.22 gi|313117214|ref|YP_004044197.1| - 0.00017 21.4 9.2 0.00017 21.4 9.2 2.0 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.6 gi|313117214|ref|YP_004044197.1| - 0.0072 16.2 14.5 0.052 13.5 14.6 1.9 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 YhfH PF14149.6 gi|313117214|ref|YP_004044197.1| - 0.11 12.5 20.2 0.21 11.6 0.2 2.9 1 1 2 3 3 3 0 YhfH-like protein Desulfoferrod_N PF06397.12 gi|313117214|ref|YP_004044197.1| - 0.41 10.3 13.2 0.81 9.4 0.1 3.2 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain C1_2 PF03107.16 gi|313117214|ref|YP_004044197.1| - 0.5 10.7 15.4 0.48 10.8 7.6 2.1 1 1 1 2 2 2 0 C1 domain Zf_RING PF16744.5 gi|313117214|ref|YP_004044197.1| - 0.53 10.4 12.9 1.3 9.2 12.9 1.5 1 1 0 1 1 1 0 KIAA1045 RING finger zf-RING_2 PF13639.6 gi|313117214|ref|YP_004044197.1| - 1.3 9.5 14.1 1.9 8.9 14.0 1.4 1 1 0 1 1 1 0 Ring finger domain zf-HIT PF04438.16 gi|313117214|ref|YP_004044197.1| - 5.1 7.1 13.0 18 5.3 0.3 2.8 1 1 1 2 2 2 0 HIT zinc finger Gmx_para_CXXCG PF09535.10 gi|313117214|ref|YP_004044197.1| - 9.1 5.5 7.4 2.8 7.1 3.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) OB_aCoA_assoc PF01796.17 gi|313117215|ref|YP_004044198.1| - 2.7e-06 27.3 0.7 4.9e-06 26.5 0.7 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|313117216|ref|YP_004044199.1| - 2e-56 191.3 0.0 2.6e-56 190.9 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|313117216|ref|YP_004044199.1| - 2.3e-07 30.5 0.1 6.2e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|313117216|ref|YP_004044199.1| - 0.0063 16.5 0.1 17 5.4 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|313117216|ref|YP_004044199.1| - 0.067 12.7 0.9 0.26 10.8 0.7 1.9 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain adh_short_C2 PF13561.6 gi|313117217|ref|YP_004044200.1| - 6.7e-66 222.2 1.1 7.9e-66 221.9 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313117217|ref|YP_004044200.1| - 2.8e-60 203.1 2.0 3.3e-60 202.9 2.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313117217|ref|YP_004044200.1| - 5.1e-21 75.4 0.3 7.2e-21 74.9 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313117217|ref|YP_004044200.1| - 0.00025 20.6 0.2 0.00033 20.2 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|313117217|ref|YP_004044200.1| - 0.00055 19.9 0.3 0.00071 19.5 0.3 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|313117217|ref|YP_004044200.1| - 0.0023 17.1 0.2 0.0028 16.8 0.2 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein CoA_binding_2 PF13380.6 gi|313117217|ref|YP_004044200.1| - 0.13 12.7 0.1 0.47 11.0 0.0 1.9 2 1 0 2 2 2 0 CoA binding domain Carboxyl_trans PF01039.22 gi|313117218|ref|YP_004044201.1| - 5.1e-196 652.1 0.1 5.7e-196 651.9 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|313117218|ref|YP_004044201.1| - 0.0007 19.1 0.5 0.0013 18.3 0.1 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) ACC_epsilon PF13822.6 gi|313117219|ref|YP_004044202.1| - 0.0019 18.8 20.5 0.0038 17.9 9.6 3.6 2 2 2 4 4 4 2 Acyl-CoA carboxylase epsilon subunit OAD_gamma PF04277.13 gi|313117219|ref|YP_004044202.1| - 6.1 7.5 15.6 3.3 8.3 12.1 2.4 2 1 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain ABC_tran PF00005.27 gi|313117220|ref|YP_004044203.1| - 5.2e-35 120.9 0.0 8e-35 120.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313117220|ref|YP_004044203.1| - 5.3e-18 65.3 0.0 1.3e-17 64.1 0.0 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313117220|ref|YP_004044203.1| - 2.9e-07 30.6 0.1 0.00068 19.5 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313117220|ref|YP_004044203.1| - 9.1e-06 26.0 0.0 0.0001 22.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|313117220|ref|YP_004044203.1| - 3e-05 23.5 0.0 6.3e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313117220|ref|YP_004044203.1| - 0.0043 17.5 0.3 0.011 16.1 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|313117220|ref|YP_004044203.1| - 0.015 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|313117220|ref|YP_004044203.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain TniB PF05621.11 gi|313117220|ref|YP_004044203.1| - 0.019 14.4 0.0 2.5 7.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein G-alpha PF00503.20 gi|313117220|ref|YP_004044203.1| - 0.039 13.1 0.0 0.047 12.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|313117220|ref|YP_004044203.1| - 0.087 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AIG1 PF04548.16 gi|313117220|ref|YP_004044203.1| - 0.12 11.7 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 AIG1 family ATP-synt_ab PF00006.25 gi|313117220|ref|YP_004044203.1| - 0.13 11.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.12 gi|313117220|ref|YP_004044203.1| - 0.15 11.3 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.26 gi|313117220|ref|YP_004044203.1| - 0.18 11.5 0.1 0.52 10.0 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|313117221|ref|YP_004044204.1| - 8.3e-28 97.6 0.0 1.3e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313117221|ref|YP_004044204.1| - 7.2e-17 61.7 0.7 1.5e-16 60.7 0.3 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313117221|ref|YP_004044204.1| - 1.8e-06 28.0 1.1 1.1e-05 25.4 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313117221|ref|YP_004044204.1| - 0.00013 21.5 0.1 0.00037 20.0 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain PRK PF00485.18 gi|313117221|ref|YP_004044204.1| - 0.0059 16.4 0.0 0.0089 15.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|313117221|ref|YP_004044204.1| - 0.019 15.3 0.5 0.1 12.9 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313117221|ref|YP_004044204.1| - 0.037 13.8 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|313117221|ref|YP_004044204.1| - 0.061 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|313117221|ref|YP_004044204.1| - 0.088 13.2 0.1 0.28 11.6 0.1 1.8 1 1 1 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|313117222|ref|YP_004044205.1| - 1.3e-19 70.7 10.8 1.3e-19 70.7 10.8 2.6 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313117222|ref|YP_004044205.1| - 1.5e-09 37.7 1.9 1.5e-09 37.7 1.9 3.4 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|313117223|ref|YP_004044206.1| - 4.4e-33 114.6 12.7 4.4e-33 114.6 12.7 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component 60KD_IMP PF02096.20 gi|313117223|ref|YP_004044206.1| - 0.0038 17.2 3.8 0.023 14.6 0.0 2.8 2 1 0 2 2 2 1 60Kd inner membrane protein DUF1471 PF07338.13 gi|313117223|ref|YP_004044206.1| - 0.091 12.7 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Lipoprotein_3 PF00938.17 gi|313117223|ref|YP_004044206.1| - 0.13 12.5 0.6 0.75 10.0 0.2 2.2 2 0 0 2 2 2 0 Lipoprotein SBP_bac_5 PF00496.22 gi|313117224|ref|YP_004044207.1| - 2e-56 191.6 8.2 2.6e-56 191.2 8.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|313117224|ref|YP_004044207.1| - 0.0021 17.8 2.0 0.0041 16.9 2.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_3 PF00497.20 gi|313117224|ref|YP_004044207.1| - 0.048 13.1 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 ABC_tran PF00005.27 gi|313117225|ref|YP_004044208.1| - 1e-36 126.4 0.0 1.4e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313117225|ref|YP_004044208.1| - 8.6e-15 55.0 0.7 1.8e-14 54.0 0.2 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313117225|ref|YP_004044208.1| - 3.3e-07 30.4 0.2 0.00068 19.5 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|313117225|ref|YP_004044208.1| - 1.3e-06 28.7 0.2 1.9e-05 24.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313117225|ref|YP_004044208.1| - 0.0015 18.9 0.1 0.004 17.6 0.1 1.7 1 1 1 2 2 2 1 AAA ATPase domain G-alpha PF00503.20 gi|313117225|ref|YP_004044208.1| - 0.0027 16.9 0.0 0.0033 16.6 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit ATP-synt_ab PF00006.25 gi|313117225|ref|YP_004044208.1| - 0.0084 15.8 0.0 0.0085 15.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|313117225|ref|YP_004044208.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|313117225|ref|YP_004044208.1| - 0.025 14.3 0.1 0.047 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TniB PF05621.11 gi|313117225|ref|YP_004044208.1| - 0.039 13.4 0.1 9.3 5.6 0.0 2.3 2 1 0 2 2 2 0 Bacterial TniB protein AAA_14 PF13173.6 gi|313117225|ref|YP_004044208.1| - 0.087 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|313117225|ref|YP_004044208.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|313117225|ref|YP_004044208.1| - 0.12 12.7 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|313117225|ref|YP_004044208.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Septin PF00735.18 gi|313117225|ref|YP_004044208.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Septin NACHT PF05729.12 gi|313117225|ref|YP_004044208.1| - 0.34 10.8 1.0 0.99 9.3 1.0 1.9 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|313117226|ref|YP_004044209.1| - 2.1e-26 93.1 0.0 2.8e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|313117226|ref|YP_004044209.1| - 4e-18 65.7 0.2 7.6e-18 64.8 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|313117226|ref|YP_004044209.1| - 0.00031 20.6 0.6 0.003 17.4 0.1 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313117226|ref|YP_004044209.1| - 0.013 15.0 0.3 0.051 13.0 0.3 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313117226|ref|YP_004044209.1| - 0.17 12.2 2.5 2.9 8.2 2.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|313117226|ref|YP_004044209.1| - 0.29 11.5 0.9 0.92 9.9 0.9 2.0 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|313117227|ref|YP_004044210.1| - 1e-28 100.4 13.7 1.4e-28 99.9 9.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|313117227|ref|YP_004044210.1| - 4.3e-14 52.2 0.3 4.3e-14 52.2 0.3 2.8 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C E1-E2_ATPase PF00122.20 gi|313117227|ref|YP_004044210.1| - 0.42 10.1 6.6 0.46 10.0 0.0 2.5 3 0 0 3 3 3 0 E1-E2 ATPase BPD_transp_1 PF00528.22 gi|313117228|ref|YP_004044211.1| - 9e-45 152.7 14.5 9e-45 152.7 14.5 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|313117229|ref|YP_004044212.1| - 9.7e-68 228.8 1.2 1.3e-67 228.5 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Retrotran_gag_3 PF14244.6 gi|313117229|ref|YP_004044212.1| - 0.15 11.9 0.0 13 5.7 0.0 2.8 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type PRODH PF18327.1 gi|313117229|ref|YP_004044212.1| - 0.76 10.0 5.3 2.7 8.3 0.0 3.4 3 0 0 3 3 3 0 Proline utilization A proline dehydrogenase N-terminal domain IclR PF01614.18 gi|313117230|ref|YP_004044213.1| - 2.8e-26 91.9 0.4 4.7e-25 87.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117230|ref|YP_004044213.1| - 1.1e-06 28.3 0.1 2.6e-06 27.1 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|313117230|ref|YP_004044213.1| - 1.8e-05 24.2 0.0 4.3e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117230|ref|YP_004044213.1| - 0.00024 20.9 0.1 0.00055 19.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313117230|ref|YP_004044213.1| - 0.0032 17.3 0.1 0.0087 15.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|313117230|ref|YP_004044213.1| - 0.013 15.2 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF5304 PF17230.2 gi|313117230|ref|YP_004044213.1| - 0.015 15.5 0.3 0.049 13.9 0.1 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5304) HTH_9 PF08221.11 gi|313117230|ref|YP_004044213.1| - 0.017 15.2 0.1 0.037 14.1 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.22 gi|313117230|ref|YP_004044213.1| - 0.018 14.9 0.1 0.048 13.6 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_46 PF15977.5 gi|313117230|ref|YP_004044213.1| - 0.022 14.7 0.0 0.083 12.9 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn-helix DNA binding B-block_TFIIIC PF04182.12 gi|313117230|ref|YP_004044213.1| - 0.032 14.4 0.0 0.084 13.0 0.0 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|313117230|ref|YP_004044213.1| - 0.051 13.5 0.0 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1803 PF08820.10 gi|313117230|ref|YP_004044213.1| - 0.054 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) DUF4148 PF13663.6 gi|313117230|ref|YP_004044213.1| - 0.055 13.7 0.5 0.17 12.1 0.1 2.1 3 0 0 3 3 2 0 Domain of unknown function (DUF4148) HTH_20 PF12840.7 gi|313117230|ref|YP_004044213.1| - 0.058 13.5 0.1 0.15 12.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain cNMP_binding PF00027.29 gi|313117230|ref|YP_004044213.1| - 0.061 13.4 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain Rio2_N PF09202.11 gi|313117230|ref|YP_004044213.1| - 0.083 13.1 0.0 0.23 11.7 0.0 1.7 2 0 0 2 2 2 0 Rio2, N-terminal SpoIIID PF12116.8 gi|313117230|ref|YP_004044213.1| - 0.086 12.9 0.2 0.28 11.3 0.1 1.9 2 0 0 2 2 2 0 Stage III sporulation protein D HTH_10 PF04967.12 gi|313117230|ref|YP_004044213.1| - 0.095 12.5 0.1 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_11 PF08279.12 gi|313117230|ref|YP_004044213.1| - 0.1 12.6 0.0 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 HTH domain AMP-binding PF00501.28 gi|313117231|ref|YP_004044214.1| - 2.3e-69 234.1 0.1 3.5e-69 233.4 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313117231|ref|YP_004044214.1| - 8.7e-14 52.3 0.0 1.6e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|313117232|ref|YP_004044215.1| - 2.4e-33 115.4 1.7 2.4e-33 115.4 1.7 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 gi|313117232|ref|YP_004044215.1| - 2e-20 73.3 0.0 6.8e-20 71.6 0.0 1.9 1 0 0 1 1 1 1 Adaptive response protein AidB N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|313117232|ref|YP_004044215.1| - 7e-18 64.6 0.0 1.4e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|313117232|ref|YP_004044215.1| - 8.2e-10 39.1 6.6 1.7e-09 38.1 0.7 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain IclR PF01614.18 gi|313117233|ref|YP_004044216.1| - 2.1e-35 121.4 0.2 5e-35 120.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313117233|ref|YP_004044216.1| - 4.2e-10 39.3 0.3 2.9e-09 36.6 0.2 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313117233|ref|YP_004044216.1| - 2.8e-07 30.3 0.0 7e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313117233|ref|YP_004044216.1| - 3.4e-07 30.1 0.1 1e-06 28.5 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313117233|ref|YP_004044216.1| - 8.1e-06 25.3 0.0 2.7e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|313117233|ref|YP_004044216.1| - 3.3e-05 23.8 0.1 7.4e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|313117233|ref|YP_004044216.1| - 3.5e-05 23.6 0.0 7.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|313117233|ref|YP_004044216.1| - 0.00043 20.4 0.2 0.0054 16.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|313117233|ref|YP_004044216.1| - 0.00048 19.8 0.1 0.0011 18.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313117233|ref|YP_004044216.1| - 0.00073 20.0 0.7 0.0026 18.2 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|313117233|ref|YP_004044216.1| - 0.0014 18.3 0.1 0.0035 17.0 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|313117233|ref|YP_004044216.1| - 0.005 16.8 0.8 0.095 12.7 0.1 2.7 3 0 0 3 3 3 1 HTH domain Fe_dep_repress PF01325.19 gi|313117233|ref|YP_004044216.1| - 0.011 15.9 0.1 0.027 14.7 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|313117233|ref|YP_004044216.1| - 0.015 15.1 0.0 0.031 14.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF1257 PF06868.11 gi|313117233|ref|YP_004044216.1| - 0.023 14.9 0.1 6.8 7.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1257) TrmB PF01978.19 gi|313117233|ref|YP_004044216.1| - 0.071 13.0 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HATPase_c PF02518.26 gi|313117234|ref|YP_004044217.1| - 2.5e-28 98.8 0.1 4.8e-28 97.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|313117234|ref|YP_004044217.1| - 1.7e-12 47.4 0.0 1.8e-11 44.2 0.0 2.7 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|313117234|ref|YP_004044217.1| - 1e-10 41.5 0.4 4.6e-10 39.4 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|313117234|ref|YP_004044217.1| - 3.3e-10 39.9 0.0 1.3e-09 38.0 0.0 2.0 2 0 0 2 2 2 1 PAS fold HAMP PF00672.25 gi|313117234|ref|YP_004044217.1| - 4.1e-08 33.5 0.0 1.2e-07 31.9 0.0 1.9 1 0 0 1 1 1 1 HAMP domain PAS_4 PF08448.10 gi|313117234|ref|YP_004044217.1| - 2.7e-06 27.6 0.4 1.4e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|313117234|ref|YP_004044217.1| - 3.2e-06 27.3 0.0 1.9e-05 24.8 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|313117234|ref|YP_004044217.1| - 9.5e-06 25.5 0.0 2.6e-05 24.1 0.0 1.8 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|313117234|ref|YP_004044217.1| - 0.0015 18.5 0.0 0.0034 17.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|313117234|ref|YP_004044217.1| - 0.0038 17.1 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FxsA PF04186.13 gi|313117234|ref|YP_004044217.1| - 0.056 13.6 0.3 0.13 12.3 0.3 1.6 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein CorA PF01544.18 gi|313117234|ref|YP_004044217.1| - 1.3 8.3 4.7 0.17 11.2 0.1 1.8 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein SBP_bac_1 PF01547.25 gi|313117235|ref|YP_004044218.1| - 8.2e-21 75.3 2.2 3.5e-20 73.2 2.2 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ApbA_C PF08546.11 gi|313117235|ref|YP_004044218.1| - 0.032 14.4 0.0 7.6 6.7 0.0 2.4 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal SpoVIF PF14069.6 gi|313117235|ref|YP_004044218.1| - 0.091 12.6 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Stage VI sporulation protein F Peripla_BP_6 PF13458.6 gi|313117236|ref|YP_004044219.1| - 5.9e-38 131.4 8.7 8.2e-38 130.9 8.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|313117236|ref|YP_004044219.1| - 6.1e-20 71.6 0.0 9e-19 67.8 0.0 2.0 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|313117236|ref|YP_004044219.1| - 3.9e-07 29.4 0.1 1.2e-06 27.8 0.1 1.7 2 0 0 2 2 2 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|313117236|ref|YP_004044219.1| - 0.019 14.8 2.8 0.019 14.8 2.8 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.21 gi|313117237|ref|YP_004044220.1| - 1.6e-43 148.5 26.3 1.6e-43 148.5 26.3 4.6 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|313117237|ref|YP_004044220.1| - 4.1e-11 43.2 0.0 4.1e-11 43.2 0.0 4.4 3 1 2 5 5 5 1 Cache domain HAMP PF00672.25 gi|313117237|ref|YP_004044220.1| - 4.3e-06 27.0 19.9 1.4e-05 25.4 0.0 5.8 6 1 1 7 7 7 2 HAMP domain BLOC1_2 PF10046.9 gi|313117237|ref|YP_004044220.1| - 0.0054 17.0 33.2 1.9 8.9 1.1 6.0 3 2 2 5 5 5 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|313117237|ref|YP_004044220.1| - 0.0078 16.5 41.3 0.075 13.3 1.5 7.0 3 2 4 7 7 7 3 Bacterial protein of unknown function (DUF948) KxDL PF10241.9 gi|313117237|ref|YP_004044220.1| - 0.031 14.6 21.9 0.15 12.4 0.1 5.0 2 2 2 4 4 4 0 Uncharacterized conserved protein OppC_N PF12911.7 gi|313117237|ref|YP_004044220.1| - 0.079 12.9 0.0 0.079 12.9 0.0 1.8 2 0 0 2 2 1 0 N-terminal TM domain of oligopeptide transport permease C Laminin_II PF06009.12 gi|313117237|ref|YP_004044220.1| - 0.13 12.3 42.1 0.025 14.6 6.6 4.6 2 2 2 4 4 4 0 Laminin Domain II DUF1664 PF07889.12 gi|313117237|ref|YP_004044220.1| - 1.4 8.9 38.3 3.1 7.8 1.2 5.9 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Mitofilin PF09731.9 gi|313117237|ref|YP_004044220.1| - 1.7 7.4 51.0 1.8 7.3 19.0 2.3 1 1 1 2 2 2 0 Mitochondrial inner membrane protein Bacillus_HBL PF05791.11 gi|313117237|ref|YP_004044220.1| - 2 8.2 10.4 1.3 8.8 1.3 3.1 2 2 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) IIGP PF05049.13 gi|313117237|ref|YP_004044220.1| - 2.8 6.9 9.2 2 7.4 2.2 2.3 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) NPV_P10 PF05531.12 gi|313117237|ref|YP_004044220.1| - 4 8.0 23.8 0.13 12.8 1.6 5.3 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|313117237|ref|YP_004044220.1| - 5.6 7.1 27.2 2.7 8.2 3.5 4.5 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Pilin_N PF07790.11 gi|313117238|ref|YP_004044221.1| - 3.4e-08 34.3 0.7 6e-08 33.5 0.3 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF2190 PF09956.9 gi|313117238|ref|YP_004044221.1| - 0.076 13.5 2.6 0.064 13.7 0.9 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) 7TMR-DISM_7TM PF07695.11 gi|313117239|ref|YP_004044222.1| - 0.056 13.3 7.4 0.068 13.1 7.4 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling MerC PF03203.14 gi|313117239|ref|YP_004044222.1| - 0.091 13.2 7.8 0.13 12.7 7.8 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein RseC_MucC PF04246.12 gi|313117239|ref|YP_004044222.1| - 2.5 8.1 6.8 7.3 6.6 0.1 2.3 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC LPAM_1 PF08139.12 gi|313117240|ref|YP_004044223.1| - 0.088 13.3 0.1 0.13 12.8 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site ABC2_membrane_2 PF12679.7 gi|313117242|ref|YP_004044225.1| - 1.3e-30 106.7 16.9 1.7e-30 106.3 13.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313117242|ref|YP_004044225.1| - 3.1e-09 37.0 9.3 3.1e-09 37.0 9.3 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313117242|ref|YP_004044225.1| - 5.9e-07 28.9 17.3 7.6e-07 28.5 17.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313117242|ref|YP_004044225.1| - 0.00023 20.8 7.1 0.00047 19.8 7.1 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|313117242|ref|YP_004044225.1| - 0.00041 19.8 13.1 0.00069 19.1 13.1 1.5 1 0 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.27 gi|313117243|ref|YP_004044226.1| - 7.4e-30 104.2 0.0 1.1e-29 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117243|ref|YP_004044226.1| - 1.2e-12 48.3 0.1 1.5e-08 34.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313117243|ref|YP_004044226.1| - 0.015 15.7 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|313117243|ref|YP_004044226.1| - 0.015 15.8 0.0 0.02 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|313117243|ref|YP_004044226.1| - 0.026 14.7 0.0 0.085 13.1 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|313117243|ref|YP_004044226.1| - 0.042 13.6 0.1 0.079 12.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|313117243|ref|YP_004044226.1| - 0.053 13.1 0.0 0.4 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|313117243|ref|YP_004044226.1| - 0.056 12.9 0.0 9.3 5.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP_bind_1 PF03029.17 gi|313117243|ref|YP_004044226.1| - 0.13 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|313117243|ref|YP_004044226.1| - 0.17 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase BsuPI PF12690.7 gi|313117244|ref|YP_004044227.1| - 0.06 13.4 0.1 8.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Intracellular proteinase inhibitor CARDB PF07705.11 gi|313117244|ref|YP_004044227.1| - 0.068 13.4 0.0 3.8 7.8 0.0 2.3 2 0 0 2 2 2 0 CARDB EamA PF00892.20 gi|313117245|ref|YP_004044228.1| - 8.5e-35 119.9 27.8 2.9e-18 66.3 9.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|313117245|ref|YP_004044228.1| - 0.015 14.6 5.3 0.02 14.2 2.0 2.2 2 0 0 2 2 2 0 Triose-phosphate Transporter family SLC35F PF06027.12 gi|313117245|ref|YP_004044228.1| - 0.028 13.9 7.3 0.049 13.1 7.3 1.4 1 1 0 1 1 1 0 Solute carrier family 35 DUF373 PF04123.13 gi|313117245|ref|YP_004044228.1| - 5.9 6.2 13.7 0.29 10.5 6.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF373) AsnC_trans_reg PF01037.21 gi|313117246|ref|YP_004044229.1| - 2.2e-09 37.1 0.7 3.6e-09 36.5 0.2 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|313117246|ref|YP_004044229.1| - 5.3e-08 32.3 0.0 9.8e-08 31.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313117246|ref|YP_004044229.1| - 0.0002 21.1 0.0 0.00041 20.1 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|313117246|ref|YP_004044229.1| - 0.00045 20.0 0.0 0.00078 19.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|313117246|ref|YP_004044229.1| - 0.00059 19.6 0.0 0.0037 17.0 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|313117246|ref|YP_004044229.1| - 0.0011 19.4 0.1 0.0025 18.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|313117246|ref|YP_004044229.1| - 0.0033 17.5 0.0 0.0067 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|313117246|ref|YP_004044229.1| - 0.0094 15.8 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GYD PF08734.11 gi|313117246|ref|YP_004044229.1| - 0.018 15.0 0.1 0.045 13.7 0.0 1.7 2 0 0 2 2 2 0 GYD domain HTH_Crp_2 PF13545.6 gi|313117246|ref|YP_004044229.1| - 0.038 14.0 0.2 0.8 9.7 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|313117246|ref|YP_004044229.1| - 0.088 12.9 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rio2_N PF09202.11 gi|313117246|ref|YP_004044229.1| - 0.1 12.8 0.0 3.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Rio2, N-terminal MerR PF00376.23 gi|313117246|ref|YP_004044229.1| - 0.17 11.7 0.0 0.42 10.4 0.0 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_10 PF04967.12 gi|313117247|ref|YP_004044230.1| - 2.4e-18 65.7 0.0 4.4e-18 64.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|313117247|ref|YP_004044230.1| - 9.3e-08 31.6 0.2 2e-06 27.4 0.0 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|313117247|ref|YP_004044230.1| - 7.2e-06 25.5 0.0 3.9e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|313117247|ref|YP_004044230.1| - 0.0003 20.2 0.0 0.00064 19.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|313117247|ref|YP_004044230.1| - 0.00039 20.1 0.0 0.0056 16.4 0.0 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|313117247|ref|YP_004044230.1| - 0.00084 19.1 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.7 gi|313117247|ref|YP_004044230.1| - 0.0071 16.4 0.1 0.019 15.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313117247|ref|YP_004044230.1| - 0.021 14.4 0.0 0.055 13.0 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|313117247|ref|YP_004044230.1| - 0.03 14.1 0.0 0.077 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|313117247|ref|YP_004044230.1| - 0.098 12.6 0.2 0.48 10.4 0.0 2.1 2 0 0 2 2 2 0 MarR family Amidohydro_1 PF01979.20 gi|313117248|ref|YP_004044231.1| - 4.2e-49 167.7 0.0 5.1e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|313117248|ref|YP_004044231.1| - 1.3e-18 67.7 1.1 2e-13 50.7 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family Cupin_2 PF07883.11 gi|313117249|ref|YP_004044232.1| - 8.5e-11 41.4 1.8 1.7e-10 40.5 1.8 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|313117249|ref|YP_004044232.1| - 0.0019 18.1 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|313117249|ref|YP_004044232.1| - 0.0093 15.6 0.1 0.019 14.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|313117249|ref|YP_004044232.1| - 0.0094 15.6 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Cupin MCRA PF06100.11 gi|313117250|ref|YP_004044233.1| - 7.5e-216 717.7 0.0 8.5e-216 717.5 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 gi|313117250|ref|YP_004044233.1| - 3e-05 24.1 0.1 7.6e-05 22.9 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|313117250|ref|YP_004044233.1| - 0.00038 20.2 0.0 0.00097 18.8 0.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase PadR PF03551.14 gi|313117251|ref|YP_004044234.1| - 1.3e-15 57.1 1.0 1.6e-15 56.8 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|313117251|ref|YP_004044234.1| - 0.0029 17.5 0.2 0.0043 17.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|313117251|ref|YP_004044234.1| - 0.02 14.7 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) B-block_TFIIIC PF04182.12 gi|313117251|ref|YP_004044234.1| - 0.025 14.7 0.0 0.057 13.6 0.0 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|313117251|ref|YP_004044234.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.7 1 1 0 1 1 1 0 MarR family MFS_1 PF07690.16 gi|313117252|ref|YP_004044235.1| - 7.4e-13 48.1 33.7 7.4e-13 48.1 33.7 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily UPF0227 PF05728.12 gi|313117252|ref|YP_004044235.1| - 0.22 11.4 0.1 0.37 10.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) UvrD-helicase PF00580.21 gi|313117253|ref|YP_004044236.1| - 2.6e-49 168.4 0.1 8.6e-49 166.7 0.1 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|313117253|ref|YP_004044236.1| - 5.4e-29 101.6 0.0 1.1e-17 64.5 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|313117253|ref|YP_004044236.1| - 7.2e-25 88.0 0.0 4.8e-24 85.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|313117253|ref|YP_004044236.1| - 6.9e-09 35.4 0.1 0.0028 17.5 0.1 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|313117253|ref|YP_004044236.1| - 1.5e-07 31.6 0.1 8.3e-06 25.9 0.0 2.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|313117253|ref|YP_004044236.1| - 2.4e-06 27.4 0.0 1.3e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|313117253|ref|YP_004044236.1| - 0.002 18.0 0.0 0.6 9.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF2800 PF10926.8 gi|313117253|ref|YP_004044236.1| - 0.0025 17.1 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_12 PF13087.6 gi|313117253|ref|YP_004044236.1| - 0.0052 16.4 0.0 0.14 11.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|313117253|ref|YP_004044236.1| - 0.031 14.0 2.8 29 4.3 0.1 4.1 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase TetR_N PF00440.23 gi|313117253|ref|YP_004044236.1| - 0.1 12.4 0.3 0.51 10.2 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family PDDEXK_1 PF12705.7 gi|313117254|ref|YP_004044237.1| - 2.4e-13 50.6 0.1 8.6e-13 48.8 0.1 2.1 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily MaoC_dehydrat_N PF13452.6 gi|313117255|ref|YP_004044238.1| - 9.8e-09 35.4 0.1 1.7e-07 31.4 0.1 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|313117255|ref|YP_004044238.1| - 0.00016 21.2 0.1 0.00082 18.9 0.1 1.9 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 gi|313117255|ref|YP_004044238.1| - 0.076 13.4 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily Penicillinase_R PF03965.16 gi|313117256|ref|YP_004044239.1| - 1.1e-11 45.0 0.0 1.3e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor FUR PF01475.19 gi|313117256|ref|YP_004044239.1| - 3.5e-05 23.9 0.1 4.4e-05 23.6 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Arg_repressor PF01316.21 gi|313117256|ref|YP_004044239.1| - 0.0019 17.9 0.4 0.0029 17.3 0.4 1.2 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain DUF480 PF04337.12 gi|313117256|ref|YP_004044239.1| - 0.0027 17.8 0.0 0.0031 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF480 HTH_27 PF13463.6 gi|313117256|ref|YP_004044239.1| - 0.0086 16.5 1.0 0.02 15.4 0.7 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.14 gi|313117256|ref|YP_004044239.1| - 0.0097 15.9 0.1 0.014 15.4 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|313117256|ref|YP_004044239.1| - 0.013 15.4 3.4 0.044 13.7 1.8 2.4 2 1 0 2 2 2 0 MarR family DUF4364 PF14277.6 gi|313117256|ref|YP_004044239.1| - 0.042 13.6 0.0 0.054 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_Tnp_Tc3_2 PF01498.18 gi|313117256|ref|YP_004044239.1| - 0.058 13.7 0.2 0.12 12.7 0.2 1.5 1 0 0 1 1 1 0 Transposase HTH_32 PF13565.6 gi|313117256|ref|YP_004044239.1| - 0.064 13.9 2.1 0.12 13.1 0.3 2.2 1 1 2 3 3 3 0 Homeodomain-like domain TrmB PF01978.19 gi|313117256|ref|YP_004044239.1| - 0.095 12.6 0.5 0.21 11.5 0.5 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|313117256|ref|YP_004044239.1| - 0.14 12.1 1.1 0.21 11.6 0.6 1.5 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Copper-bind PF00127.20 gi|313117257|ref|YP_004044240.1| - 7.6e-18 64.8 1.7 1.7e-17 63.7 1.7 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313117257|ref|YP_004044240.1| - 0.0022 18.1 2.7 0.044 13.9 2.8 2.2 1 1 0 1 1 1 1 Cupredoxin-like domain CBM_20 PF00686.19 gi|313117257|ref|YP_004044240.1| - 0.19 11.7 1.3 0.45 10.5 0.1 2.1 3 0 0 3 3 3 0 Starch binding domain PKD_3 PF16820.5 gi|313117257|ref|YP_004044240.1| - 0.41 10.4 2.0 4.5 7.1 0.1 2.2 2 0 0 2 2 2 0 PKD-like domain nos_propeller_2 PF18793.1 gi|313117258|ref|YP_004044241.1| - 4.6e-33 113.4 0.0 1.1e-32 112.2 0.0 1.7 1 0 0 1 1 1 1 Nitrous oxide reductase propeller repeat 2 nos_propeller PF18764.1 gi|313117258|ref|YP_004044241.1| - 8.5e-29 99.3 0.6 2.7e-27 94.5 0.2 3.1 3 0 0 3 3 3 1 Nitrous oxide reductase propeller repeat Cupredoxin_1 PF13473.6 gi|313117258|ref|YP_004044241.1| - 2e-07 31.1 0.0 4.9e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|313117258|ref|YP_004044241.1| - 1.5e-05 24.6 3.6 2.3e-05 24.0 3.6 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence COX2 PF00116.20 gi|313117258|ref|YP_004044241.1| - 3e-05 23.9 0.0 8.6e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain WD40 PF00400.32 gi|313117258|ref|YP_004044241.1| - 0.068 14.1 0.8 28 5.8 0.0 4.0 4 0 0 4 4 4 0 WD domain, G-beta repeat NosD PF05048.13 gi|313117260|ref|YP_004044243.1| - 3.4e-56 190.2 15.0 9.6e-54 182.2 14.2 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|313117260|ref|YP_004044243.1| - 1.1e-26 93.6 15.9 4.5e-19 68.9 3.9 2.3 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|313117260|ref|YP_004044243.1| - 1.3e-05 24.6 6.7 0.05 12.9 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) VCBS PF13517.6 gi|313117260|ref|YP_004044243.1| - 0.019 15.5 0.4 0.019 15.5 0.4 3.0 3 0 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Lsm_C PF14894.6 gi|313117260|ref|YP_004044243.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Lsm C-terminal ABC_tran PF00005.27 gi|313117261|ref|YP_004044244.1| - 7.2e-32 110.8 0.0 5.5e-31 107.9 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|313117261|ref|YP_004044244.1| - 1.8e-12 47.7 0.4 3.8e-08 33.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313117261|ref|YP_004044244.1| - 0.0013 19.4 0.0 0.0023 18.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|313117261|ref|YP_004044244.1| - 0.0063 16.9 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|313117261|ref|YP_004044244.1| - 0.019 15.0 0.3 0.28 11.3 0.3 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|313117261|ref|YP_004044244.1| - 0.019 14.9 0.1 0.033 14.1 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|313117261|ref|YP_004044244.1| - 0.026 14.2 0.6 0.056 13.2 0.6 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313117261|ref|YP_004044244.1| - 0.049 13.1 0.0 10 5.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.7 gi|313117262|ref|YP_004044245.1| - 8e-19 68.0 25.6 1.3e-17 64.1 25.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313117262|ref|YP_004044245.1| - 0.072 12.6 9.9 0.22 11.1 9.7 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein HtaA PF04213.13 gi|313117263|ref|YP_004044246.1| - 2.1e-07 31.5 6.5 0.013 16.0 0.3 4.3 1 1 3 4 4 4 2 Htaa Sarcoglycan_1 PF04790.13 gi|313117263|ref|YP_004044246.1| - 4.4e-06 26.2 0.0 1.3 8.3 0.0 4.1 2 1 2 4 4 4 2 Sarcoglycan complex subunit protein DUF945 PF06097.11 gi|313117263|ref|YP_004044246.1| - 8.2e-05 21.9 9.2 0.97 8.5 6.3 3.9 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF945) YabP PF07873.11 gi|313117263|ref|YP_004044246.1| - 8.6e-05 22.3 7.0 0.37 10.6 0.0 5.8 5 2 1 6 6 6 1 YabP family DUF4968 PF16338.5 gi|313117263|ref|YP_004044246.1| - 0.00024 21.4 7.3 0.49 10.7 0.4 6.4 1 1 4 6 6 6 1 Domain of unknown function (DUF4968) DUF2345 PF10106.9 gi|313117263|ref|YP_004044246.1| - 0.00026 20.9 0.0 0.89 9.4 0.0 3.2 2 2 1 3 3 3 2 Uncharacterized protein conserved in bacteria (DUF2345) Glyco_hydro_65C PF03633.15 gi|313117263|ref|YP_004044246.1| - 0.00035 20.4 11.4 3.3 7.7 0.1 7.2 4 3 3 8 8 8 1 Glycosyl hydrolase family 65, C-terminal domain DUF2807 PF10988.8 gi|313117263|ref|YP_004044246.1| - 0.0043 16.9 16.0 0.075 12.8 7.8 3.1 1 1 1 2 2 2 2 Putative auto-transporter adhesin, head GIN domain Imm50 PF15594.6 gi|313117263|ref|YP_004044246.1| - 0.023 14.9 5.3 7.1 6.9 0.1 5.3 1 1 4 7 7 7 0 Immunity protein 50 DUF3868 PF12984.7 gi|313117263|ref|YP_004044246.1| - 0.03 14.1 2.4 71 3.3 0.0 5.1 3 2 1 5 5 5 0 Domain of unknown function, B. Theta Gene description (DUF3868) Ribosomal_L6 PF00347.23 gi|313117263|ref|YP_004044246.1| - 0.041 14.6 1.5 0.56 10.9 0.1 3.5 3 1 0 3 3 3 0 Ribosomal protein L6 LEA_2 PF03168.13 gi|313117263|ref|YP_004044246.1| - 0.061 13.9 0.0 42 4.8 0.0 3.9 2 1 1 3 3 3 0 Late embryogenesis abundant protein DNA_pol3_beta PF00712.19 gi|313117263|ref|YP_004044246.1| - 0.063 13.4 6.0 2.1 8.5 0.1 4.3 2 2 1 4 4 4 0 DNA polymerase III beta subunit, N-terminal domain PCC_BT PF18140.1 gi|313117263|ref|YP_004044246.1| - 0.069 13.5 11.2 7.6 6.9 0.1 5.8 1 1 2 3 3 3 0 Propionyl-coenzyme A carboxylase BT domain DUF108 PF01958.18 gi|313117263|ref|YP_004044246.1| - 0.098 13.0 0.4 73 3.8 0.0 4.6 3 2 1 4 4 4 0 Domain of unknown function DUF108 DUF4302 PF14135.6 gi|313117263|ref|YP_004044246.1| - 0.21 11.5 2.0 0.59 10.0 0.3 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4302) MelC1 PF06236.11 gi|313117263|ref|YP_004044246.1| - 0.33 11.1 1.9 39 4.4 0.2 3.4 2 2 1 3 3 3 0 Tyrosinase co-factor MelC1 HSP20 PF00011.21 gi|313117263|ref|YP_004044246.1| - 4.3 7.5 22.8 4.1 7.6 0.8 6.0 2 2 3 7 7 7 0 Hsp20/alpha crystallin family DUF2850 PF11012.8 gi|313117263|ref|YP_004044246.1| - 4.8 7.5 11.7 22 5.4 0.1 5.4 2 2 4 6 6 6 0 Protein of unknown function (DUF2850) MORN_2 PF07661.13 gi|313117264|ref|YP_004044247.1| - 5e-05 23.1 0.0 16 6.2 0.0 5.2 5 0 0 5 5 5 1 MORN repeat variant zinc_ribbon_9 PF14369.6 gi|313117264|ref|YP_004044247.1| - 0.022 15.0 0.2 0.054 13.8 0.2 1.7 1 0 0 1 1 1 0 zinc-ribbon DUF1936 PF09151.10 gi|313117264|ref|YP_004044247.1| - 0.16 11.9 2.2 24 4.9 0.3 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF1936) Pterin_4a PF01329.19 gi|313117265|ref|YP_004044248.1| - 1.3e-26 92.6 0.2 1.6e-26 92.3 0.2 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase SerH PF06873.11 gi|313117265|ref|YP_004044248.1| - 0.21 10.4 0.2 0.26 10.1 0.2 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH FAD-oxidase_C PF02913.19 gi|313117266|ref|YP_004044249.1| - 4e-60 203.5 0.6 8.2e-60 202.5 0.6 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|313117266|ref|YP_004044249.1| - 1.1e-37 128.9 0.6 4.1e-37 127.0 0.3 2.1 2 1 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.6 gi|313117266|ref|YP_004044249.1| - 3.2e-10 40.4 4.7 5.9e-10 39.6 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|313117266|ref|YP_004044249.1| - 4.8e-10 39.7 5.3 1.1e-09 38.6 5.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|313117266|ref|YP_004044249.1| - 2.3e-05 24.5 0.0 0.0029 17.8 0.0 2.7 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|313117266|ref|YP_004044249.1| - 3.5e-05 23.8 4.4 0.014 15.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|313117266|ref|YP_004044249.1| - 0.00031 21.3 4.9 0.00068 20.2 4.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313117266|ref|YP_004044249.1| - 0.00046 20.3 4.4 0.0014 18.7 4.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|313117266|ref|YP_004044249.1| - 0.01 16.0 2.9 0.096 12.8 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|313117266|ref|YP_004044249.1| - 0.012 15.7 9.5 0.47 10.7 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|313117266|ref|YP_004044249.1| - 0.012 15.4 12.7 0.083 12.7 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|313117266|ref|YP_004044249.1| - 0.081 13.5 12.5 0.11 13.0 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain ChitinaseA_N PF08329.10 gi|313117266|ref|YP_004044249.1| - 0.21 11.2 0.3 11 5.7 0.1 2.6 2 0 0 2 2 2 0 Chitinase A, N-terminal domain Fer4_6 PF12837.7 gi|313117266|ref|YP_004044249.1| - 0.29 11.3 11.9 0.55 10.4 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|313117266|ref|YP_004044249.1| - 0.3 11.3 2.8 0.48 10.6 1.0 2.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313117266|ref|YP_004044249.1| - 3.1 8.8 6.3 9.5 7.2 1.9 1.9 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|313117266|ref|YP_004044249.1| - 3.9 8.1 5.8 5.9 7.5 0.1 3.2 4 0 0 4 4 2 0 4Fe-4S single cluster domain of Ferredoxin I Glyoxalase PF00903.25 gi|313117267|ref|YP_004044250.1| - 3.5e-16 59.6 0.2 4e-16 59.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313117267|ref|YP_004044250.1| - 1.2e-13 51.3 0.1 5.8e-11 42.6 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|313117267|ref|YP_004044250.1| - 8.9e-08 32.9 0.2 1.1e-07 32.6 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|313117267|ref|YP_004044250.1| - 0.00016 21.8 0.0 0.002 18.2 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|313117267|ref|YP_004044250.1| - 0.017 15.0 0.0 0.03 14.3 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase-like domain Phage_Mu_Gp45 PF06890.12 gi|313117267|ref|YP_004044250.1| - 0.028 14.2 0.1 0.44 10.3 0.0 2.1 2 1 0 2 2 2 0 Bacteriophage Mu Gp45 protein HpcH_HpaI PF03328.14 gi|313117268|ref|YP_004044251.1| - 9.6e-09 34.7 0.0 3.5e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family IclR PF01614.18 gi|313117269|ref|YP_004044252.1| - 2.7e-32 111.3 0.4 8.7e-32 109.7 0.1 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_20 PF12840.7 gi|313117269|ref|YP_004044252.1| - 2e-06 27.8 0.1 4.9e-06 26.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313117269|ref|YP_004044252.1| - 6.4e-06 25.9 0.2 1.9e-05 24.3 0.2 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|313117269|ref|YP_004044252.1| - 8e-05 22.4 0.0 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313117269|ref|YP_004044252.1| - 0.0004 20.2 0.0 0.00092 19.1 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313117269|ref|YP_004044252.1| - 0.0015 18.4 0.1 0.006 16.5 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|313117269|ref|YP_004044252.1| - 0.0017 18.2 0.0 0.0036 17.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|313117269|ref|YP_004044252.1| - 0.0043 17.5 0.5 0.019 15.5 0.0 2.3 3 0 0 3 3 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|313117269|ref|YP_004044252.1| - 0.018 14.8 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|313117269|ref|YP_004044252.1| - 0.025 14.1 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|313117269|ref|YP_004044252.1| - 0.036 14.0 1.2 0.057 13.4 0.1 1.9 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|313117269|ref|YP_004044252.1| - 0.047 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|313117269|ref|YP_004044252.1| - 0.048 13.8 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|313117269|ref|YP_004044252.1| - 0.092 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_40 PF14493.6 gi|313117269|ref|YP_004044252.1| - 0.13 12.7 0.2 0.96 10.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.13 gi|313117269|ref|YP_004044252.1| - 0.13 11.9 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain Big_9 PF17963.1 gi|313117270|ref|YP_004044253.1| - 3.7e-27 94.9 44.6 4.1e-15 56.3 19.5 10.3 5 3 4 11 11 11 2 Bacterial Ig domain Cadherin_4 PF17803.1 gi|313117270|ref|YP_004044253.1| - 2.2e-16 60.2 37.0 1.5e-09 38.3 11.9 10.7 8 4 0 8 8 8 2 Bacterial cadherin-like domain Cadherin_5 PF17892.1 gi|313117270|ref|YP_004044253.1| - 6.2e-09 35.7 29.5 1.9e-06 27.7 11.3 6.4 6 0 0 6 6 6 2 Cadherin-like domain MG2 PF01835.19 gi|313117270|ref|YP_004044253.1| - 0.005 17.3 0.1 0.056 13.9 0.0 2.9 2 0 0 2 2 2 1 MG2 domain PGF-CTERM PF18204.1 gi|313117270|ref|YP_004044253.1| - 0.023 14.7 4.7 0.047 13.7 4.7 1.5 1 0 0 1 1 1 0 PGF-CTERM motif Gmad2 PF10648.9 gi|313117270|ref|YP_004044253.1| - 0.034 14.4 0.0 0.034 14.4 0.0 5.3 6 0 0 6 6 6 0 Immunoglobulin-like domain of bacterial spore germination SoxE PF06525.11 gi|313117270|ref|YP_004044253.1| - 0.48 9.9 5.2 0.11 11.9 0.5 2.4 2 0 0 2 2 2 0 Sulfocyanin (SoxE) domain TENA_THI-4 PF03070.16 gi|313117271|ref|YP_004044254.1| - 9.1e-50 169.4 0.0 1.1e-49 169.1 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|313117272|ref|YP_004044255.1| - 1.2e-24 87.4 0.0 1.4e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.17 gi|313117273|ref|YP_004044256.1| - 4.8e-31 108.0 29.0 6.4e-31 107.6 29.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TMEM191C PF15194.6 gi|313117273|ref|YP_004044256.1| - 0.23 11.6 3.6 0.39 10.9 0.1 2.6 2 0 0 2 2 2 0 TMEM191C family Nramp PF01566.18 gi|313117275|ref|YP_004044258.1| - 3.9e-64 216.9 35.5 3.9e-64 216.9 35.5 1.8 1 1 1 2 2 2 1 Natural resistance-associated macrophage protein PAZ PF02170.22 gi|313117276|ref|YP_004044259.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 PAZ domain PIN_5 PF08745.11 gi|313117277|ref|YP_004044260.1| - 7.3e-77 257.5 0.3 8.4e-77 257.3 0.3 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Lig_C PF18330.1 gi|313117278|ref|YP_004044261.1| - 6.1e-45 152.3 0.3 1.4e-44 151.1 0.2 1.7 2 0 0 2 2 2 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|313117278|ref|YP_004044261.1| - 8.6e-10 39.2 0.0 1.5e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 RNA ligase CBS PF00571.28 gi|313117279|ref|YP_004044262.1| - 9.5e-26 90.0 5.7 6.3e-14 52.2 0.2 2.4 2 1 1 3 3 3 2 CBS domain DAGK_cat PF00781.24 gi|313117279|ref|YP_004044262.1| - 0.11 12.2 0.8 0.51 10.0 0.1 2.0 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Na_H_Exchanger PF00999.21 gi|313117280|ref|YP_004044263.1| - 5.7e-34 117.5 42.7 7.7e-34 117.1 42.7 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|313117280|ref|YP_004044263.1| - 1.1e-28 99.8 0.8 1.1e-28 99.8 0.8 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|313117280|ref|YP_004044263.1| - 8.4e-09 35.1 0.0 2.8e-08 33.5 0.0 2.0 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|313117280|ref|YP_004044263.1| - 1.3e-05 25.6 0.2 2.8e-05 24.5 0.2 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|313117280|ref|YP_004044263.1| - 0.00066 20.2 1.4 0.0015 19.1 0.2 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|313117280|ref|YP_004044263.1| - 0.00085 18.9 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|313117280|ref|YP_004044263.1| - 0.001 19.0 1.2 0.0021 18.0 1.2 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|313117280|ref|YP_004044263.1| - 0.0013 18.9 0.3 0.0041 17.4 0.3 1.9 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|313117280|ref|YP_004044263.1| - 0.0014 18.3 0.1 0.0035 17.0 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 gi|313117280|ref|YP_004044263.1| - 0.0022 17.5 0.3 0.0034 16.9 0.3 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|313117280|ref|YP_004044263.1| - 0.003 16.9 0.1 0.0041 16.4 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.15 gi|313117280|ref|YP_004044263.1| - 0.015 15.4 0.1 0.036 14.2 0.1 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|313117280|ref|YP_004044263.1| - 0.025 13.9 0.3 0.098 12.0 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|313117280|ref|YP_004044263.1| - 0.063 13.8 0.1 0.17 12.4 0.1 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain DMT_6 PF04342.12 gi|313117280|ref|YP_004044263.1| - 0.077 13.2 4.2 1.7 8.9 0.1 3.0 2 1 0 2 2 2 0 Putative member of DMT superfamily (DUF486) Usp PF00582.26 gi|313117281|ref|YP_004044264.1| - 3.5e-64 215.6 6.9 4.2e-33 114.8 2.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF5615 PF18480.1 gi|313117281|ref|YP_004044264.1| - 0.015 15.1 0.9 0.54 10.1 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5615) Asparaginase_C PF17763.1 gi|313117281|ref|YP_004044264.1| - 0.032 14.5 0.5 0.33 11.2 0.1 2.5 2 1 1 3 3 3 0 Glutaminase/Asparaginase C-terminal domain FR47 PF08445.10 gi|313117281|ref|YP_004044264.1| - 0.23 11.4 1.2 10 6.2 0.1 2.7 3 0 0 3 3 3 0 FR47-like protein HTH_20 PF12840.7 gi|313117282|ref|YP_004044265.1| - 3.1e-10 39.9 0.3 4.9e-10 39.3 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|313117282|ref|YP_004044265.1| - 6.1e-07 29.1 0.4 2e-06 27.5 0.3 2.0 2 1 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|313117282|ref|YP_004044265.1| - 0.00038 20.3 0.0 0.00065 19.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313117282|ref|YP_004044265.1| - 0.0014 18.5 0.1 0.0034 17.2 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313117282|ref|YP_004044265.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313117282|ref|YP_004044265.1| - 0.029 14.2 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF742 PF05331.11 gi|313117282|ref|YP_004044265.1| - 0.037 13.8 0.2 0.042 13.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) FUR PF01475.19 gi|313117282|ref|YP_004044265.1| - 0.038 14.1 0.0 0.068 13.3 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family ArsR PF09824.9 gi|313117282|ref|YP_004044265.1| - 0.14 11.7 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_10 PF04967.12 gi|313117283|ref|YP_004044266.1| - 3.8e-22 77.8 0.2 5.9e-22 77.2 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|313117283|ref|YP_004044266.1| - 1.4e-05 25.0 0.5 4.1e-05 23.5 0.5 1.9 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_5 PF01022.20 gi|313117283|ref|YP_004044266.1| - 0.0016 18.3 0.0 0.0049 16.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313117283|ref|YP_004044266.1| - 0.0065 16.3 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 MarR family GerE PF00196.19 gi|313117283|ref|YP_004044266.1| - 0.024 14.2 0.1 0.94 9.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|313117283|ref|YP_004044266.1| - 0.034 13.7 0.1 0.1 12.2 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|313117283|ref|YP_004044266.1| - 0.064 13.2 0.1 0.19 11.7 0.1 1.8 1 1 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|313117283|ref|YP_004044266.1| - 0.077 13.2 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r3 PF04539.16 gi|313117283|ref|YP_004044266.1| - 0.085 13.0 0.5 0.18 11.9 0.1 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_20 PF12840.7 gi|313117283|ref|YP_004044266.1| - 0.11 12.6 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Homeodomain PF00046.29 gi|313117283|ref|YP_004044266.1| - 0.12 12.2 0.1 0.3 10.9 0.1 1.6 1 0 0 1 1 1 0 Homeodomain LexA_DNA_bind PF01726.16 gi|313117283|ref|YP_004044266.1| - 0.16 11.8 1.1 1.3 8.8 1.1 2.2 1 1 0 1 1 1 0 LexA DNA binding domain Zn-ribbon_8 PF09723.10 gi|313117284|ref|YP_004044267.1| - 0.00029 20.9 0.3 0.00036 20.6 0.3 1.1 1 0 0 1 1 1 1 Zinc ribbon domain Elf1 PF05129.13 gi|313117284|ref|YP_004044267.1| - 0.0013 18.7 0.2 0.0013 18.7 0.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|313117284|ref|YP_004044267.1| - 0.0058 16.0 0.3 3.5 7.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|313117284|ref|YP_004044267.1| - 0.033 14.2 0.3 0.042 13.9 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|313117284|ref|YP_004044267.1| - 0.092 12.4 0.2 0.25 11.0 0.1 1.7 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger AA_permease_2 PF13520.6 gi|313117285|ref|YP_004044268.1| - 4.9e-40 137.6 35.6 6.1e-40 137.3 35.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|313117285|ref|YP_004044268.1| - 2.5e-35 122.0 34.2 3.2e-35 121.6 34.2 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|313117285|ref|YP_004044268.1| - 0.0045 15.9 1.1 0.0045 15.9 1.1 3.2 3 1 1 4 4 4 1 Spore germination protein Usp PF00582.26 gi|313117286|ref|YP_004044269.1| - 5.6e-09 36.6 7.1 2e-05 25.1 2.4 2.8 2 1 0 2 2 2 2 Universal stress protein family T2SSM_b PF10741.9 gi|313117286|ref|YP_004044269.1| - 0.15 11.9 1.8 14 5.5 0.1 2.7 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein M subtype b Copper-bind PF00127.20 gi|313117287|ref|YP_004044270.1| - 5.2e-19 68.5 0.1 1.3e-18 67.2 0.1 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313117287|ref|YP_004044270.1| - 7.8e-05 22.7 0.0 0.049 13.7 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain DUF3493 PF11998.8 gi|313117287|ref|YP_004044270.1| - 0.15 12.2 0.6 0.59 10.3 0.0 1.9 2 0 0 2 2 2 0 Low psii accumulation1 / Rep27 Na_Ca_ex PF01699.24 gi|313117288|ref|YP_004044271.1| - 2.9e-38 131.2 32.2 7.3e-23 81.2 12.9 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4730 PF15873.5 gi|313117288|ref|YP_004044271.1| - 0.022 15.0 1.0 0.022 15.0 1.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4730) CBS PF00571.28 gi|313117289|ref|YP_004044272.1| - 1.2e-31 108.9 18.4 9.6e-10 38.8 1.6 4.5 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|313117289|ref|YP_004044272.1| - 0.05 14.4 0.0 0.13 13.0 0.0 1.8 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF1508 PF07411.12 gi|313117289|ref|YP_004044272.1| - 0.15 11.9 0.1 0.31 10.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1508) GATase PF00117.28 gi|313117290|ref|YP_004044273.1| - 8.9e-20 71.3 0.0 1.2e-19 70.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|313117290|ref|YP_004044273.1| - 1.5e-06 28.1 0.1 9.8e-06 25.5 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.16 gi|313117290|ref|YP_004044273.1| - 0.0082 15.1 0.0 0.015 14.2 0.0 1.4 1 1 0 1 1 1 1 Homoserine O-succinyltransferase UPF0047 PF01894.17 gi|313117292|ref|YP_004044275.1| - 3.1e-38 130.5 0.0 3.6e-38 130.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Usp PF00582.26 gi|313117293|ref|YP_004044276.1| - 1.3e-26 93.8 0.4 1.5e-26 93.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family TPR_12 PF13424.6 gi|313117293|ref|YP_004044276.1| - 0.05 13.9 0.1 0.71 10.2 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Porin_OmpG PF09381.10 gi|313117294|ref|YP_004044277.1| - 0.032 14.0 0.1 0.038 13.8 0.1 1.1 1 0 0 1 1 1 0 Outer membrane protein G (OmpG) E1-E2_ATPase PF00122.20 gi|313117295|ref|YP_004044278.1| - 1.5e-45 154.9 0.5 1.5e-45 154.9 0.5 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|313117295|ref|YP_004044278.1| - 3.2e-34 119.1 2.4 6.2e-34 118.1 2.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|313117295|ref|YP_004044278.1| - 3.8e-08 33.6 0.0 1.2e-07 32.0 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|313117295|ref|YP_004044278.1| - 0.0016 18.3 0.1 0.0026 17.6 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HCV_NS4a PF01006.20 gi|313117295|ref|YP_004044278.1| - 0.034 13.9 4.0 0.06 13.1 1.7 2.7 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a DsbD_2 PF13386.6 gi|313117296|ref|YP_004044279.1| - 1.3e-43 149.3 14.4 1.5e-43 149.1 14.4 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region COX2 PF00116.20 gi|313117299|ref|YP_004044282.1| - 1e-10 41.5 0.1 1.4e-10 41.1 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|313117299|ref|YP_004044282.1| - 0.011 15.9 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain COX2-transmemb PF09125.10 gi|313117299|ref|YP_004044282.1| - 0.02 14.6 0.6 0.038 13.8 0.6 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane UCR_Fe-S_N PF10399.9 gi|313117299|ref|YP_004044282.1| - 0.2 11.0 0.6 0.4 10.1 0.6 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal COX1 PF00115.20 gi|313117300|ref|YP_004044283.1| - 8.1e-92 308.3 64.4 1e-90 304.7 62.8 2.0 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I SNARE_assoc PF09335.11 gi|313117304|ref|YP_004044287.1| - 2.1e-23 83.1 5.7 2.1e-23 83.1 5.7 2.4 2 1 0 2 2 2 1 SNARE associated Golgi protein CD20 PF04103.15 gi|313117304|ref|YP_004044287.1| - 9.6 6.3 12.4 0.32 11.1 6.3 1.6 2 0 0 2 2 2 0 CD20-like family MCPsignal PF00015.21 gi|313117305|ref|YP_004044288.1| - 3.1e-42 144.3 26.7 3.1e-42 144.3 26.7 4.0 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|313117305|ref|YP_004044288.1| - 3.5e-24 85.9 1.0 3.5e-24 85.9 1.0 6.3 4 3 2 6 6 6 2 Cache domain HAMP PF00672.25 gi|313117305|ref|YP_004044288.1| - 1.4e-13 51.0 0.4 1.4e-13 51.0 0.4 4.1 4 1 0 4 4 4 2 HAMP domain Cache_3-Cache_2 PF17201.4 gi|313117305|ref|YP_004044288.1| - 4.4e-13 49.2 3.5 5.5e-11 42.3 0.6 4.9 4 1 1 6 6 6 2 Cache 3/Cache 2 fusion domain dCache_2 PF08269.11 gi|313117305|ref|YP_004044288.1| - 6.6e-07 28.8 17.5 1.3e-06 27.9 0.3 4.5 3 1 1 4 4 4 2 Cache domain sCache_2 PF17200.4 gi|313117305|ref|YP_004044288.1| - 1.2e-06 28.5 1.2 1.2e-06 28.5 1.2 4.4 3 1 1 4 4 4 1 Single Cache domain 2 DUF948 PF06103.11 gi|313117305|ref|YP_004044288.1| - 0.037 14.3 50.1 0.06 13.6 3.2 5.8 5 2 1 7 7 5 0 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 gi|313117305|ref|YP_004044288.1| - 0.056 11.6 32.5 0.0058 14.9 15.2 2.5 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA Laminin_II PF06009.12 gi|313117305|ref|YP_004044288.1| - 0.076 13.0 42.5 0.019 15.0 4.7 4.9 2 2 3 5 5 5 0 Laminin Domain II CorA PF01544.18 gi|313117305|ref|YP_004044288.1| - 0.54 9.5 25.8 1.4 8.2 5.8 3.9 1 1 3 4 4 4 0 CorA-like Mg2+ transporter protein YkyA PF10368.9 gi|313117305|ref|YP_004044288.1| - 0.87 9.2 41.7 5.2 6.7 12.2 3.9 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein DUF3106 PF11304.8 gi|313117305|ref|YP_004044288.1| - 1.6 9.2 8.4 0.19 12.2 1.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3106) Laminin_I PF06008.14 gi|313117305|ref|YP_004044288.1| - 3.7 7.2 40.5 1.3 8.7 10.0 3.8 1 1 2 3 3 3 0 Laminin Domain I DUF21 PF01595.20 gi|313117306|ref|YP_004044289.1| - 1.1e-30 106.6 0.1 1.5e-30 106.2 0.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|313117306|ref|YP_004044289.1| - 7.9e-13 48.7 2.1 3.1e-07 30.7 0.0 2.5 2 0 0 2 2 2 2 CBS domain Pribosyltran PF00156.27 gi|313117307|ref|YP_004044290.1| - 3e-26 91.8 0.0 5.2e-26 91.1 0.0 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|313117307|ref|YP_004044290.1| - 0.0011 18.5 0.0 0.0019 17.7 0.0 1.6 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|313117307|ref|YP_004044290.1| - 0.008 15.7 0.0 0.021 14.3 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase PALP PF00291.25 gi|313117307|ref|YP_004044290.1| - 0.076 12.4 1.8 0.15 11.4 0.3 1.9 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme Hydrolase_4 PF12146.8 gi|313117308|ref|YP_004044291.1| - 1.5e-08 34.2 0.1 0.0036 16.6 0.0 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|313117308|ref|YP_004044291.1| - 4.8e-08 33.9 0.9 0.0039 17.8 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|313117308|ref|YP_004044291.1| - 2.1e-07 30.9 0.0 0.0041 16.8 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|313117308|ref|YP_004044291.1| - 4.1e-07 29.8 0.0 1e-06 28.5 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|313117308|ref|YP_004044291.1| - 6.2e-05 22.6 0.7 0.27 10.7 0.2 2.9 2 1 1 3 3 3 2 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|313117308|ref|YP_004044291.1| - 0.00025 21.0 0.0 0.12 12.3 0.0 2.1 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.18 gi|313117308|ref|YP_004044291.1| - 0.0012 18.5 0.1 0.031 13.9 0.1 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.16 gi|313117308|ref|YP_004044291.1| - 0.046 13.5 0.0 3.4 7.4 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.13 gi|313117308|ref|YP_004044291.1| - 0.14 10.7 0.0 7.8 4.9 0.0 2.0 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II SBP_bac_8 PF13416.6 gi|313117309|ref|YP_004044292.1| - 3.6e-49 168.1 9.6 5.1e-49 167.6 9.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313117309|ref|YP_004044292.1| - 6e-30 105.3 11.2 8.7e-30 104.7 11.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|313117309|ref|YP_004044292.1| - 0.00012 21.6 0.1 0.073 12.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|313117309|ref|YP_004044292.1| - 0.0015 18.4 0.8 0.57 9.9 0.1 2.5 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|313117309|ref|YP_004044292.1| - 0.02 14.7 0.1 0.051 13.4 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Helo_like_N PF17111.5 gi|313117309|ref|YP_004044292.1| - 0.069 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins BPD_transp_1 PF00528.22 gi|313117310|ref|YP_004044293.1| - 2.9e-13 49.9 13.5 2.9e-13 49.9 13.5 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313117311|ref|YP_004044294.1| - 8e-17 61.6 17.4 8e-17 61.6 17.4 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|313117312|ref|YP_004044295.1| - 9.8e-33 113.6 0.0 1.6e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|313117312|ref|YP_004044295.1| - 3.5e-11 43.8 0.2 1.5e-10 41.8 0.2 2.2 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|313117312|ref|YP_004044295.1| - 1.9e-10 40.8 0.5 1.9e-09 37.6 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|313117312|ref|YP_004044295.1| - 4.7e-07 29.9 0.4 0.022 14.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|313117312|ref|YP_004044295.1| - 8.2e-05 23.1 0.0 0.00079 19.9 0.0 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain Rad17 PF03215.15 gi|313117312|ref|YP_004044295.1| - 0.00051 20.0 0.0 0.00083 19.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|313117312|ref|YP_004044295.1| - 0.0016 18.8 0.2 0.0028 18.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313117312|ref|YP_004044295.1| - 0.0019 18.6 0.1 0.0034 17.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|313117312|ref|YP_004044295.1| - 0.0035 16.8 0.0 0.061 12.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|313117312|ref|YP_004044295.1| - 0.0051 16.7 0.0 0.0089 16.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 gi|313117312|ref|YP_004044295.1| - 0.016 15.5 0.4 0.046 14.0 0.1 2.0 2 0 0 2 2 2 0 TOBE domain Mg_chelatase PF01078.21 gi|313117312|ref|YP_004044295.1| - 0.02 14.3 0.0 0.054 12.9 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|313117312|ref|YP_004044295.1| - 0.02 15.0 0.0 0.045 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313117312|ref|YP_004044295.1| - 0.029 14.1 0.1 0.054 13.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313117312|ref|YP_004044295.1| - 0.052 14.0 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|313117312|ref|YP_004044295.1| - 0.059 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|313117312|ref|YP_004044295.1| - 0.094 12.3 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313117312|ref|YP_004044295.1| - 0.11 12.4 0.4 0.5 10.4 0.1 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|313117312|ref|YP_004044295.1| - 0.14 12.4 0.1 0.41 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|313117312|ref|YP_004044295.1| - 0.26 11.8 0.0 0.43 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|313117312|ref|YP_004044295.1| - 0.3 10.7 0.0 0.49 10.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain DUF2207 PF09972.9 gi|313117313|ref|YP_004044296.1| - 0.74 8.5 5.8 2.9 6.5 0.8 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Lipase_chap PF03280.14 gi|313117315|ref|YP_004044298.1| - 0.37 10.7 2.6 9.7 6.1 0.3 2.2 2 0 0 2 2 2 0 Proteobacterial lipase chaperone protein Peripla_BP_2 PF01497.18 gi|313117316|ref|YP_004044299.1| - 4.4e-12 46.1 0.0 6.1e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Glyco_hyd_65N_2 PF14498.6 gi|313117316|ref|YP_004044299.1| - 0.072 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain Amelotin PF15757.5 gi|313117316|ref|YP_004044299.1| - 0.085 12.4 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Amelotin HEAT_2 PF13646.6 gi|313117317|ref|YP_004044300.1| - 4.9e-14 52.5 19.4 3.8e-07 30.4 2.3 3.7 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.6 gi|313117317|ref|YP_004044300.1| - 5.7e-12 45.9 12.4 0.0017 18.8 0.6 5.2 1 1 4 5 5 5 4 HEAT-like repeat HEAT PF02985.22 gi|313117317|ref|YP_004044300.1| - 1.5e-07 31.1 8.5 0.018 15.3 0.1 5.1 6 0 0 6 6 6 3 HEAT repeat Cnd1 PF12717.7 gi|313117317|ref|YP_004044300.1| - 1.5e-07 31.6 0.0 0.014 15.4 0.0 3.0 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|313117317|ref|YP_004044300.1| - 0.00019 20.1 0.0 0.00096 17.8 0.0 2.1 1 1 1 2 2 2 1 Adaptin N terminal region DZR PF12773.7 gi|313117317|ref|YP_004044300.1| - 0.0049 16.9 0.9 0.0099 15.9 0.9 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|313117317|ref|YP_004044300.1| - 0.015 14.7 6.6 0.053 12.9 6.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain RTP1_C1 PF10363.9 gi|313117317|ref|YP_004044300.1| - 0.036 14.2 0.0 0.6 10.3 0.0 2.6 2 1 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 CLASP_N PF12348.8 gi|313117317|ref|YP_004044300.1| - 0.078 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 CLASP N terminal zinc_ribbon_2 PF13240.6 gi|313117317|ref|YP_004044300.1| - 0.089 12.5 4.0 0.41 10.4 4.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain HEAT_PBS PF03130.16 gi|313117317|ref|YP_004044300.1| - 0.13 13.0 12.9 7.6 7.5 1.1 4.9 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat Zn-ribbon_8 PF09723.10 gi|313117317|ref|YP_004044300.1| - 8.1 6.7 8.0 20 5.4 0.6 2.6 1 1 1 2 2 2 0 Zinc ribbon domain Cdc6_C PF09079.11 gi|313117318|ref|YP_004044301.1| - 2.3e-15 56.4 0.0 5.1e-15 55.2 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313117318|ref|YP_004044301.1| - 3.5e-10 40.3 0.0 7.6e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313117318|ref|YP_004044301.1| - 2.7e-09 37.6 0.1 1.9e-08 34.9 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_32 PF13654.6 gi|313117318|ref|YP_004044301.1| - 0.0021 16.9 0.2 0.11 11.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|313117318|ref|YP_004044301.1| - 0.0025 18.2 0.0 0.0088 16.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|313117318|ref|YP_004044301.1| - 0.0043 17.4 0.0 0.0088 16.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase ATPase_2 PF01637.18 gi|313117318|ref|YP_004044301.1| - 0.0087 16.0 0.0 0.018 14.9 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|313117318|ref|YP_004044301.1| - 0.017 14.7 0.0 0.075 12.5 0.0 1.9 2 1 0 2 2 2 0 P-loop containing dynein motor region PIF1 PF05970.14 gi|313117318|ref|YP_004044301.1| - 0.024 13.8 0.0 0.051 12.7 0.0 1.4 2 0 0 2 2 2 0 PIF1-like helicase NB-ARC PF00931.22 gi|313117318|ref|YP_004044301.1| - 0.027 13.6 0.0 0.05 12.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|313117318|ref|YP_004044301.1| - 0.031 13.3 0.0 0.062 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|313117318|ref|YP_004044301.1| - 0.032 13.9 0.1 0.071 12.8 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|313117318|ref|YP_004044301.1| - 0.037 13.9 0.0 0.099 12.5 0.0 1.7 2 0 0 2 2 1 0 RsgA GTPase DEAD PF00270.29 gi|313117318|ref|YP_004044301.1| - 0.041 13.7 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase Kinesin PF00225.23 gi|313117318|ref|YP_004044301.1| - 0.057 12.3 0.0 0.088 11.7 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain NACHT PF05729.12 gi|313117318|ref|YP_004044301.1| - 0.065 13.1 0.0 0.16 11.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.9 gi|313117318|ref|YP_004044301.1| - 0.1 11.5 0.0 0.95 8.3 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.14 gi|313117318|ref|YP_004044301.1| - 0.11 12.5 0.0 0.46 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|313117318|ref|YP_004044301.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|313117318|ref|YP_004044301.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFOR_C PF01314.18 gi|313117319|ref|YP_004044302.1| - 1.4e-77 261.3 0.1 2.3e-77 260.6 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|313117319|ref|YP_004044302.1| - 5.1e-60 202.7 0.3 8.5e-60 202.0 0.3 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SBP_bac_6 PF13343.6 gi|313117320|ref|YP_004044303.1| - 2.1e-17 63.4 0.0 3.5e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|313117320|ref|YP_004044303.1| - 2.4e-17 63.6 0.7 4.4e-17 62.8 0.7 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|313117320|ref|YP_004044303.1| - 9.7e-15 55.3 3.3 1e-14 55.3 1.2 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|313117320|ref|YP_004044303.1| - 8.1e-11 42.1 0.0 2e-10 40.9 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|313117321|ref|YP_004044304.1| - 7.2e-11 42.1 15.5 1.2e-10 41.4 15.5 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|313117322|ref|YP_004044305.1| - 4.3e-09 36.4 11.7 4.3e-09 36.4 11.7 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|313117323|ref|YP_004044306.1| - 7.3e-37 126.9 0.0 9.8e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117323|ref|YP_004044306.1| - 7.7e-09 35.8 0.2 0.00021 21.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|313117323|ref|YP_004044306.1| - 0.00085 19.3 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|313117323|ref|YP_004044306.1| - 0.0079 16.5 0.1 0.021 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|313117323|ref|YP_004044306.1| - 0.0094 15.4 0.5 0.61 9.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|313117323|ref|YP_004044306.1| - 0.016 15.6 1.8 0.052 13.9 1.8 1.9 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 gi|313117323|ref|YP_004044306.1| - 0.067 12.9 1.0 0.13 12.0 0.6 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.6 gi|313117323|ref|YP_004044306.1| - 0.11 13.0 0.4 0.19 12.2 0.4 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313117323|ref|YP_004044306.1| - 0.12 12.8 1.5 1.1 9.7 1.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|313117323|ref|YP_004044306.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|313117323|ref|YP_004044306.1| - 0.17 11.0 0.2 0.29 10.3 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|313117323|ref|YP_004044306.1| - 0.21 11.4 0.4 0.41 10.4 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|313117323|ref|YP_004044306.1| - 0.21 11.3 0.1 0.35 10.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313117323|ref|YP_004044306.1| - 0.27 11.4 0.7 0.91 9.7 0.7 2.0 1 1 0 1 1 1 0 AAA domain PQQ_2 PF13360.6 gi|313117324|ref|YP_004044307.1| - 3.1e-37 128.4 13.9 1.1e-19 70.9 3.1 2.3 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|313117324|ref|YP_004044307.1| - 2.8e-22 78.5 28.7 0.0035 17.8 0.0 8.9 8 1 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|313117324|ref|YP_004044307.1| - 3.2e-18 64.7 16.0 0.00036 20.3 0.1 7.9 8 1 0 8 8 8 5 PQQ enzyme repeat DUF1391 PF07151.12 gi|313117324|ref|YP_004044307.1| - 0.96 9.3 2.8 28 4.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1391) ABC2_membrane_2 PF12679.7 gi|313117326|ref|YP_004044309.1| - 2.2e-13 50.2 5.8 7.1e-12 45.2 5.8 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313117326|ref|YP_004044309.1| - 1.2e-05 25.3 0.3 2.6e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein Ycf4 PF02392.16 gi|313117326|ref|YP_004044309.1| - 3 7.4 5.2 0.39 10.3 1.1 1.5 2 0 0 2 2 2 0 Ycf4 ABC_tran PF00005.27 gi|313117327|ref|YP_004044310.1| - 1.1e-27 97.3 0.0 2.8e-27 95.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|313117327|ref|YP_004044310.1| - 1.3e-09 38.3 4.3 2.1e-06 27.8 0.0 2.4 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313117327|ref|YP_004044310.1| - 8.5e-05 23.2 0.3 0.00014 22.5 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|313117327|ref|YP_004044310.1| - 0.013 15.2 0.2 0.026 14.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|313117327|ref|YP_004044310.1| - 0.014 15.8 0.0 0.027 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|313117327|ref|YP_004044310.1| - 0.054 14.0 0.5 0.1 13.1 0.5 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|313117327|ref|YP_004044310.1| - 0.083 12.3 0.4 2.9 7.3 0.1 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF2529 PF10740.9 gi|313117327|ref|YP_004044310.1| - 0.11 12.2 0.4 0.17 11.5 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) ABC2_membrane_2 PF12679.7 gi|313117330|ref|YP_004044313.1| - 3.9e-36 124.8 37.9 3.5e-21 75.7 10.8 3.1 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313117330|ref|YP_004044313.1| - 2.1e-07 30.4 45.6 1.9e-05 23.9 18.4 2.5 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313117330|ref|YP_004044313.1| - 6.2e-05 23.0 5.2 6.2e-05 23.0 5.2 2.9 3 0 0 3 3 3 2 ABC-2 family transporter protein Ldr_toxin PF13940.6 gi|313117330|ref|YP_004044313.1| - 0.17 12.0 3.5 6.2 7.0 0.2 3.6 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system ABC_tran PF00005.27 gi|313117331|ref|YP_004044314.1| - 2.1e-28 99.6 0.0 3.8e-28 98.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117331|ref|YP_004044314.1| - 7.5e-13 49.0 0.1 3.3e-07 30.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|313117331|ref|YP_004044314.1| - 1.5e-05 24.6 0.0 2.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|313117331|ref|YP_004044314.1| - 0.00039 21.1 0.0 0.00089 19.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|313117331|ref|YP_004044314.1| - 0.0023 18.5 0.2 0.0038 17.7 0.2 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313117331|ref|YP_004044314.1| - 0.012 15.6 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|313117331|ref|YP_004044314.1| - 0.019 14.7 0.0 0.035 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|313117331|ref|YP_004044314.1| - 0.025 14.1 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SMC_N PF02463.19 gi|313117331|ref|YP_004044314.1| - 0.029 13.8 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 gi|313117331|ref|YP_004044314.1| - 0.053 13.5 0.1 0.09 12.7 0.1 1.4 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter MeaB PF03308.16 gi|313117331|ref|YP_004044314.1| - 0.06 12.3 0.0 0.22 10.5 0.0 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|313117331|ref|YP_004044314.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|313117331|ref|YP_004044314.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3215 PF11503.8 gi|313117331|ref|YP_004044314.1| - 0.092 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3215) Tubulin PF00091.25 gi|313117335|ref|YP_004044318.1| - 2.9e-28 99.4 0.0 4.4e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|313117335|ref|YP_004044318.1| - 0.048 12.8 1.3 0.18 11.0 0.3 2.2 1 1 1 3 3 3 0 Tubulin like DUF1616 PF07760.11 gi|313117336|ref|YP_004044319.1| - 2.3e-115 385.0 1.3 2.7e-115 384.8 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.6 gi|313117336|ref|YP_004044319.1| - 2.7 7.6 10.1 5.8 6.5 0.1 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) CarboxypepD_reg PF13620.6 gi|313117337|ref|YP_004044320.1| - 1.2e-05 25.4 18.1 0.023 14.9 3.8 4.7 3 2 1 4 4 4 2 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|313117337|ref|YP_004044320.1| - 2.8e-05 24.2 2.6 0.047 13.8 0.2 3.2 2 0 0 2 2 2 2 Macroglobulin domain MG4 DUF4129 PF13559.6 gi|313117337|ref|YP_004044320.1| - 6.5e-05 23.1 1.2 0.00046 20.4 1.2 2.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarbopepD_reg_2 PF13715.6 gi|313117337|ref|YP_004044320.1| - 0.0021 18.0 3.3 2.4 8.2 0.0 4.0 3 0 0 3 3 3 2 CarboxypepD_reg-like domain CaMBD PF02888.16 gi|313117337|ref|YP_004044320.1| - 0.0072 16.5 0.2 0.017 15.3 0.2 1.5 1 0 0 1 1 1 1 Calmodulin binding domain EF-G-binding_N PF07299.11 gi|313117337|ref|YP_004044320.1| - 0.79 10.3 3.2 9.3 6.9 0.0 3.1 3 0 0 3 3 3 0 Elongation factor G-binding protein, N-terminal DUF58 PF01882.18 gi|313117338|ref|YP_004044321.1| - 1.3e-19 70.3 0.0 2.8e-19 69.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|313117338|ref|YP_004044321.1| - 0.0015 19.2 0.0 0.0038 17.8 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain 7tm_1 PF00001.21 gi|313117339|ref|YP_004044322.1| - 3.9 6.7 6.8 1.2 8.4 2.2 1.9 2 0 0 2 2 2 0 7 transmembrane receptor (rhodopsin family) AAA_3 PF07726.11 gi|313117341|ref|YP_004044324.1| - 2.5e-61 205.3 0.5 6.3e-61 204.0 0.2 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|313117341|ref|YP_004044324.1| - 5.2e-20 71.1 0.2 1.3e-19 69.8 0.2 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|313117341|ref|YP_004044324.1| - 1.7e-13 50.7 0.0 3.1e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|313117341|ref|YP_004044324.1| - 8.1e-06 25.4 0.5 0.0081 15.6 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|313117341|ref|YP_004044324.1| - 8.1e-06 25.1 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|313117341|ref|YP_004044324.1| - 3.7e-05 23.5 0.1 0.00017 21.3 0.1 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|313117341|ref|YP_004044324.1| - 0.00012 21.8 0.2 0.0013 18.5 0.2 2.5 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|313117341|ref|YP_004044324.1| - 0.00026 21.4 1.4 0.00055 20.4 0.2 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313117341|ref|YP_004044324.1| - 0.056 13.8 0.1 0.31 11.4 0.1 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|313117341|ref|YP_004044324.1| - 0.065 12.9 1.2 0.55 9.9 1.2 2.3 1 1 0 1 1 1 0 AAA domain DUF4350 PF14258.6 gi|313117342|ref|YP_004044325.1| - 1.3e-12 48.0 9.5 4.3e-09 36.7 0.2 3.6 3 1 1 4 4 4 3 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|313117342|ref|YP_004044325.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF4159 PF13709.6 gi|313117342|ref|YP_004044325.1| - 0.043 13.2 0.0 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) DUF3429 PF11911.8 gi|313117343|ref|YP_004044326.1| - 0.01 16.2 2.9 0.012 15.9 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) DMT_YdcZ PF04657.13 gi|313117343|ref|YP_004044326.1| - 0.073 13.3 3.1 0.17 12.2 3.3 1.5 1 1 0 1 1 1 0 Putative inner membrane exporter, YdcZ TPPK_C PF12555.8 gi|313117343|ref|YP_004044326.1| - 0.2 11.7 4.4 6.8 6.8 1.8 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF2537 PF10801.8 gi|313117343|ref|YP_004044326.1| - 0.22 11.7 6.6 0.3 11.4 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2537) CARDB PF07705.11 gi|313117345|ref|YP_004044328.1| - 3.2e-24 85.1 91.0 5.3e-08 33.0 6.8 10.7 11 1 1 12 12 12 6 CARDB TED_complement PF07678.14 gi|313117345|ref|YP_004044328.1| - 4.6e-11 42.3 2.4 2.9e-05 23.2 0.1 2.8 1 1 2 3 3 3 2 A-macroglobulin TED domain Prenyltrans PF00432.21 gi|313117345|ref|YP_004044328.1| - 1.7e-06 27.6 5.8 6.4 6.6 0.2 5.4 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|313117345|ref|YP_004044328.1| - 0.00014 21.1 13.9 0.0087 15.2 1.2 3.2 1 1 1 3 3 3 3 Squalene-hopene cyclase C-terminal domain Fn3-like PF14310.6 gi|313117345|ref|YP_004044328.1| - 0.0032 17.5 0.9 6.3 7.0 0.1 5.2 4 0 0 4 4 4 1 Fibronectin type III-like domain Y_Y_Y PF07495.13 gi|313117345|ref|YP_004044328.1| - 0.049 13.6 0.8 6.7 6.7 0.0 4.5 4 0 0 4 4 4 0 Y_Y_Y domain DUF2393 PF09624.10 gi|313117345|ref|YP_004044328.1| - 0.059 13.4 0.0 17 5.4 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) Inhibitor_I42 PF09394.10 gi|313117345|ref|YP_004044328.1| - 0.15 12.5 3.0 4.1 7.9 0.0 4.4 3 0 0 3 3 3 0 Chagasin family peptidase inhibitor I42 Lysyl_oxidase PF01186.17 gi|313117345|ref|YP_004044328.1| - 0.21 11.2 1.2 2.3 7.8 0.1 2.3 2 0 0 2 2 2 0 Lysyl oxidase SQHop_cyclase_N PF13249.6 gi|313117345|ref|YP_004044328.1| - 0.33 10.0 3.5 9.6 5.2 0.1 3.3 3 1 1 4 4 4 0 Squalene-hopene cyclase N-terminal domain YtkA PF13115.6 gi|313117345|ref|YP_004044328.1| - 8.6 7.0 21.0 8.8 7.0 0.1 7.6 7 1 0 7 7 7 0 YtkA-like Dockerin_1 PF00404.18 gi|313117346|ref|YP_004044329.1| - 1.8e-09 37.7 3.1 1.8e-09 37.7 3.1 2.8 2 0 0 2 2 2 1 Dockerin type I domain PEGA PF08308.11 gi|313117346|ref|YP_004044329.1| - 0.005 16.7 2.0 0.23 11.4 0.2 3.2 3 0 0 3 3 3 1 PEGA domain YtkA PF13115.6 gi|313117346|ref|YP_004044329.1| - 0.022 15.4 8.7 4 8.1 0.2 4.2 4 1 0 4 4 4 0 YtkA-like PGF-CTERM PF18204.1 gi|313117347|ref|YP_004044330.1| - 9.1e-08 31.8 7.5 2e-07 30.8 7.5 1.6 1 0 0 1 1 1 1 PGF-CTERM motif DUF3244 PF11589.8 gi|313117349|ref|YP_004044332.1| - 2.6e-06 27.4 1.4 0.059 13.5 0.1 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF3244) SOG2 PF10428.9 gi|313117349|ref|YP_004044332.1| - 0.061 12.5 20.4 0.082 12.1 20.4 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein PAC3 PF10178.9 gi|313117349|ref|YP_004044332.1| - 0.11 12.6 0.8 0.42 10.8 0.0 2.3 3 0 0 3 3 3 0 Proteasome assembly chaperone 3 FAM176 PF14851.6 gi|313117349|ref|YP_004044332.1| - 0.13 11.9 1.2 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 FAM176 family Velvet PF11754.8 gi|313117349|ref|YP_004044332.1| - 3.7 7.4 15.2 9.2 6.1 15.2 1.6 1 1 0 1 1 1 0 Velvet factor PGF-CTERM PF18204.1 gi|313117350|ref|YP_004044333.1| - 1.2e-07 31.5 7.1 2.4e-07 30.5 7.1 1.5 1 0 0 1 1 1 1 PGF-CTERM motif MG2 PF01835.19 gi|313117350|ref|YP_004044333.1| - 0.0013 19.2 2.5 1.9 9.0 0.2 4.3 5 0 0 5 5 5 2 MG2 domain DUF4581 PF15167.6 gi|313117350|ref|YP_004044333.1| - 0.029 14.5 0.2 0.12 12.5 0.2 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4581) KH_1 PF00013.29 gi|313117350|ref|YP_004044333.1| - 0.068 13.0 0.1 0.38 10.6 0.0 2.4 2 0 0 2 2 2 0 KH domain DUF4251 PF14059.6 gi|313117350|ref|YP_004044333.1| - 1.7 8.6 10.3 1 9.3 0.8 4.8 5 1 1 6 6 6 0 Domain of unknown function (DUF4251) CarboxypepD_reg PF13620.6 gi|313117352|ref|YP_004044335.1| - 1.4e-05 25.3 12.1 3e-05 24.2 1.2 4.1 3 1 1 4 4 4 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|313117352|ref|YP_004044335.1| - 0.0012 18.8 1.6 0.031 14.3 0.1 2.8 2 0 0 2 2 2 1 CarboxypepD_reg-like domain FtsX PF02687.21 gi|313117352|ref|YP_004044335.1| - 0.0019 18.6 5.0 0.0019 18.6 5.0 5.1 5 2 1 6 6 6 1 FtsX-like permease family PEGA PF08308.11 gi|313117352|ref|YP_004044335.1| - 0.013 15.3 6.2 0.051 13.5 0.5 3.9 4 0 0 4 4 4 0 PEGA domain Big_6 PF17936.1 gi|313117352|ref|YP_004044335.1| - 0.025 14.8 0.1 0.21 11.9 0.1 2.6 1 0 0 1 1 1 0 Bacterial Ig domain CARDB PF07705.11 gi|313117352|ref|YP_004044335.1| - 0.29 11.4 2.5 0.37 11.1 0.4 2.3 2 0 0 2 2 2 0 CARDB ABC_tran PF00005.27 gi|313117353|ref|YP_004044336.1| - 5.1e-30 104.8 0.0 6.5e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117353|ref|YP_004044336.1| - 1.6e-06 28.1 0.7 0.0057 16.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|313117353|ref|YP_004044336.1| - 4.3e-05 24.0 0.1 7.2e-05 23.2 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|313117353|ref|YP_004044336.1| - 0.0035 17.0 0.2 0.0087 15.8 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|313117353|ref|YP_004044336.1| - 0.02 13.9 0.1 0.035 13.2 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|313117353|ref|YP_004044336.1| - 0.02 14.8 0.1 0.045 13.7 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|313117353|ref|YP_004044336.1| - 0.026 14.0 0.0 0.29 10.6 0.0 2.0 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313117353|ref|YP_004044336.1| - 0.029 14.6 0.1 0.29 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|313117353|ref|YP_004044336.1| - 0.066 13.1 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|313117353|ref|YP_004044336.1| - 0.071 13.6 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|313117353|ref|YP_004044336.1| - 0.074 13.3 0.1 1.3 9.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|313117353|ref|YP_004044336.1| - 0.096 12.6 0.3 2.2 8.2 0.1 2.2 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|313117353|ref|YP_004044336.1| - 0.19 11.9 0.2 0.33 11.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain YdjM PF04307.14 gi|313117354|ref|YP_004044337.1| - 1.4e-10 40.8 7.3 1.9e-10 40.3 7.3 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase UPF0242 PF06785.11 gi|313117354|ref|YP_004044337.1| - 0.072 13.2 1.0 0.1 12.7 1.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spore_YabQ PF09578.10 gi|313117355|ref|YP_004044338.1| - 0.034 14.4 0.6 0.034 14.4 0.6 3.4 4 0 0 4 4 4 0 Spore cortex protein YabQ (Spore_YabQ) FtsX PF02687.21 gi|313117356|ref|YP_004044339.1| - 2.9e-11 43.7 13.0 2.1e-07 31.3 2.0 5.2 6 0 0 6 6 6 2 FtsX-like permease family CarboxypepD_reg PF13620.6 gi|313117356|ref|YP_004044339.1| - 0.004 17.4 4.7 0.004 17.4 4.7 4.8 4 1 1 5 5 5 1 Carboxypeptidase regulatory-like domain CopC PF04234.12 gi|313117356|ref|YP_004044339.1| - 0.42 11.7 2.6 0.93 10.6 0.3 2.7 2 1 0 2 2 2 0 CopC domain DUF5325 PF17259.2 gi|313117356|ref|YP_004044339.1| - 4.2 7.3 7.1 2.2 8.2 1.0 3.3 2 0 0 2 2 2 0 Family of unknown function (DUF5325) Glycos_transf_2 PF00535.26 gi|313117357|ref|YP_004044340.1| - 2.2e-23 82.9 0.0 3.4e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313117357|ref|YP_004044340.1| - 0.002 18.0 0.0 0.0025 17.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HATPase_c PF02518.26 gi|313117358|ref|YP_004044341.1| - 1.8e-14 54.2 0.0 3e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313117358|ref|YP_004044341.1| - 8.8e-14 51.3 1.4 8.8e-14 51.3 1.4 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|313117358|ref|YP_004044341.1| - 1.7e-13 50.7 0.1 5.9e-13 49.0 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 gi|313117358|ref|YP_004044341.1| - 6.7e-12 45.6 0.3 6.8e-11 42.4 0.1 2.6 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|313117358|ref|YP_004044341.1| - 5.3e-10 39.3 0.0 1.4e-09 37.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|313117358|ref|YP_004044341.1| - 2.7e-06 27.6 0.0 9.3e-06 25.8 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|313117358|ref|YP_004044341.1| - 1.1e-05 25.3 0.0 5.7e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|313117358|ref|YP_004044341.1| - 0.00015 22.0 0.1 0.0055 17.0 0.0 2.9 1 1 1 2 2 2 1 PAS fold PAS_7 PF12860.7 gi|313117358|ref|YP_004044341.1| - 0.00041 20.5 0.0 0.002 18.3 0.0 2.2 1 1 0 1 1 1 1 PAS fold VIT1 PF01988.19 gi|313117358|ref|YP_004044341.1| - 0.018 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 VIT family DUF2524 PF10732.9 gi|313117358|ref|YP_004044341.1| - 0.055 13.8 0.8 1.2 9.5 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) NUDIX PF00293.28 gi|313117359|ref|YP_004044342.1| - 3.1e-11 43.4 0.0 3.9e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain GDP_Man_Dehyd PF16363.5 gi|313117360|ref|YP_004044343.1| - 4.9e-81 272.7 0.0 5.5e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|313117360|ref|YP_004044343.1| - 7e-67 225.4 0.0 8.6e-67 225.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|313117360|ref|YP_004044343.1| - 5.5e-24 84.7 0.0 7.3e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|313117360|ref|YP_004044343.1| - 4.2e-22 78.6 0.0 4.9e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|313117360|ref|YP_004044343.1| - 9.4e-21 74.2 0.0 1.7e-19 70.1 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|313117360|ref|YP_004044343.1| - 2.3e-14 53.2 0.0 5e-13 48.8 0.0 2.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|313117360|ref|YP_004044343.1| - 6.2e-12 45.8 0.0 9.7e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|313117360|ref|YP_004044343.1| - 3.1e-07 30.2 0.1 5e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|313117360|ref|YP_004044343.1| - 0.00077 19.0 0.0 0.071 12.6 0.0 2.6 3 0 0 3 3 3 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|313117360|ref|YP_004044343.1| - 0.01 16.1 0.2 0.028 14.7 0.1 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|313117360|ref|YP_004044343.1| - 0.09 12.9 0.6 1.6 8.9 0.2 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|313117360|ref|YP_004044343.1| - 0.16 11.9 0.0 0.47 10.4 0.0 1.8 1 1 0 1 1 1 0 KR domain RmlD_sub_bind PF04321.17 gi|313117361|ref|YP_004044344.1| - 5.2e-70 235.8 0.0 5.9e-70 235.6 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|313117361|ref|YP_004044344.1| - 3.1e-25 89.0 0.0 4.3e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313117361|ref|YP_004044344.1| - 3.7e-15 56.2 0.0 8e-15 55.1 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|313117361|ref|YP_004044344.1| - 3.2e-07 29.8 0.2 1.1e-06 28.0 0.1 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|313117361|ref|YP_004044344.1| - 2.4e-06 26.8 0.3 4.7e-06 25.8 0.3 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|313117361|ref|YP_004044344.1| - 3.1e-06 26.6 0.0 6.3e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|313117361|ref|YP_004044344.1| - 0.004 17.1 0.0 0.0059 16.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding zf-ACC PF17848.1 gi|313117362|ref|YP_004044345.1| - 0.00017 21.6 0.9 0.00053 20.0 0.1 2.0 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain DNA_ligase_ZBD PF03119.16 gi|313117362|ref|YP_004044345.1| - 0.011 15.8 2.9 0.02 14.9 2.9 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|313117362|ref|YP_004044345.1| - 0.012 15.5 1.4 0.018 15.0 1.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|313117362|ref|YP_004044345.1| - 0.027 13.9 0.8 0.054 12.9 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|313117362|ref|YP_004044345.1| - 0.03 13.9 0.6 0.079 12.6 0.1 1.9 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|313117362|ref|YP_004044345.1| - 0.033 13.7 0.1 0.033 13.7 0.1 2.0 3 0 0 3 3 3 0 TFIIB zinc-binding IBR PF01485.21 gi|313117362|ref|YP_004044345.1| - 0.068 13.4 0.7 0.69 10.2 1.1 1.9 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain UPF0547 PF10571.9 gi|313117362|ref|YP_004044345.1| - 0.079 13.0 3.3 0.14 12.3 0.2 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 NTP_transferase PF00483.23 gi|313117363|ref|YP_004044346.1| - 2.8e-55 187.6 0.0 3.4e-55 187.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313117363|ref|YP_004044346.1| - 4.4e-10 40.1 0.0 7.5e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|313117363|ref|YP_004044346.1| - 3.8e-06 26.4 1.5 0.0074 16.0 0.1 3.4 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|313117363|ref|YP_004044346.1| - 0.0081 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dTDP_sugar_isom PF00908.17 gi|313117364|ref|YP_004044347.1| - 3.1e-17 62.8 0.0 4.1e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|313117364|ref|YP_004044347.1| - 0.00014 21.6 0.0 0.00019 21.1 0.0 1.3 1 1 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|313117364|ref|YP_004044347.1| - 0.006 16.3 0.3 0.061 13.1 0.3 2.1 1 1 0 1 1 1 1 Cupin domain Polysacc_synt_C PF14667.6 gi|313117365|ref|YP_004044348.1| - 3e-26 92.2 13.5 3e-26 92.2 13.5 3.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|313117365|ref|YP_004044348.1| - 1.2e-22 80.5 11.8 1.2e-22 80.5 11.8 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|313117365|ref|YP_004044348.1| - 7.1e-21 74.8 36.5 9.7e-19 67.8 15.9 2.2 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|313117365|ref|YP_004044348.1| - 9.4e-11 41.0 12.5 9.4e-11 41.0 12.5 2.0 2 0 0 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|313117365|ref|YP_004044348.1| - 2.1e-10 40.5 6.7 2.1e-10 40.5 6.7 3.5 3 1 1 4 4 4 1 MatE Sulfatase PF00884.23 gi|313117367|ref|YP_004044350.1| - 4.7e-18 65.6 0.0 6e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|313117367|ref|YP_004044350.1| - 0.014 15.0 0.9 0.022 14.3 0.4 1.7 2 1 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|313117367|ref|YP_004044350.1| - 0.12 11.0 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.26 gi|313117368|ref|YP_004044351.1| - 3.5e-18 66.0 0.0 4.8e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|313117368|ref|YP_004044351.1| - 3e-12 46.9 0.0 5.5e-12 46.1 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|313117368|ref|YP_004044351.1| - 0.00027 20.7 0.5 0.0018 18.0 0.1 2.4 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_trans_1_4 PF13692.6 gi|313117369|ref|YP_004044352.1| - 1.5e-12 48.1 0.0 2.7e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|313117369|ref|YP_004044352.1| - 4.5e-06 27.0 0.0 9.8e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|313117369|ref|YP_004044352.1| - 0.00062 19.3 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313117369|ref|YP_004044352.1| - 0.0065 16.5 0.0 0.0096 15.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|313117370|ref|YP_004044353.1| - 8.2e-27 93.8 0.0 1.3e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313117370|ref|YP_004044353.1| - 6.7e-24 84.8 0.0 1.1e-23 84.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313117370|ref|YP_004044353.1| - 4.3e-12 46.4 1.5 1.2e-11 45.0 0.6 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313117370|ref|YP_004044353.1| - 5.3e-07 30.2 0.0 9.6e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|313117370|ref|YP_004044353.1| - 0.0016 18.5 0.2 0.033 14.2 0.2 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|313117370|ref|YP_004044353.1| - 0.038 14.4 0.0 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Sulfatase PF00884.23 gi|313117371|ref|YP_004044354.1| - 8.6e-15 54.9 1.7 3.9e-13 49.5 1.7 2.2 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|313117371|ref|YP_004044354.1| - 0.0043 16.7 5.6 0.033 13.8 5.6 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase acVLRF1 PF18859.1 gi|313117371|ref|YP_004044354.1| - 0.0053 17.0 0.1 0.0094 16.2 0.1 1.3 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor Glyco_transf_4 PF13439.6 gi|313117372|ref|YP_004044355.1| - 9.1e-17 61.6 0.0 1.3e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|313117372|ref|YP_004044355.1| - 2.7e-14 53.1 0.1 1.3e-13 50.9 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313117372|ref|YP_004044355.1| - 9.2e-14 52.0 0.0 2.7e-13 50.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|313117372|ref|YP_004044355.1| - 0.00014 22.3 0.0 0.00021 21.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|313117372|ref|YP_004044355.1| - 0.0018 18.0 0.0 0.0031 17.2 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|313117372|ref|YP_004044355.1| - 0.0044 17.0 0.2 0.082 12.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|313117372|ref|YP_004044355.1| - 0.026 14.9 0.0 0.064 13.7 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|313117373|ref|YP_004044356.1| - 1e-26 93.5 0.0 1.6e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|313117373|ref|YP_004044356.1| - 1.1e-23 84.1 0.0 2.8e-23 82.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|313117373|ref|YP_004044356.1| - 2e-23 83.2 0.7 3.4e-23 82.5 0.7 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|313117373|ref|YP_004044356.1| - 7.5e-18 65.5 1.8 7.5e-18 65.5 1.8 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain NTP_transferase PF00483.23 gi|313117374|ref|YP_004044357.1| - 9.2e-44 149.9 0.0 1e-43 149.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|313117374|ref|YP_004044357.1| - 3.1e-14 53.6 0.0 3.8e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|313117374|ref|YP_004044357.1| - 0.0003 20.6 0.0 0.0015 18.4 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RecA PF00154.21 gi|313117374|ref|YP_004044357.1| - 0.21 11.0 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein PGF-CTERM PF18204.1 gi|313117375|ref|YP_004044358.1| - 0.0092 15.9 1.7 0.019 14.9 1.7 1.5 1 0 0 1 1 1 1 PGF-CTERM motif Peptidase_S8 PF00082.22 gi|313117376|ref|YP_004044359.1| - 8.3e-43 146.7 7.1 8.3e-43 146.7 7.1 3.2 2 1 0 2 2 2 1 Subtilase family CarbopepD_reg_2 PF13715.6 gi|313117376|ref|YP_004044359.1| - 4.9e-10 39.3 1.2 1.8e-09 37.5 0.3 2.6 2 0 0 2 2 2 1 CarboxypepD_reg-like domain Epimerase PF01370.21 gi|313117377|ref|YP_004044360.1| - 3.9e-44 150.9 0.1 4.8e-44 150.6 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313117377|ref|YP_004044360.1| - 4.4e-43 147.9 1.1 3e-42 145.2 1.1 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|313117377|ref|YP_004044360.1| - 1.4e-13 50.6 0.1 1.8e-13 50.2 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|313117377|ref|YP_004044360.1| - 6.3e-11 41.8 0.1 3.4e-10 39.4 0.1 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|313117377|ref|YP_004044360.1| - 7.1e-10 38.5 0.2 6.3e-07 28.8 0.0 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|313117377|ref|YP_004044360.1| - 6e-08 32.2 0.0 8.4e-06 25.1 0.1 2.6 2 1 0 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|313117377|ref|YP_004044360.1| - 0.14 11.7 0.1 5.7 6.4 0.0 2.4 2 1 0 2 2 2 0 NmrA-like family Response_reg PF00072.24 gi|313117378|ref|YP_004044361.1| - 4e-17 62.4 0.3 7.2e-17 61.6 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|313117378|ref|YP_004044361.1| - 6.5e-17 61.6 6.3 1.3e-16 60.7 6.3 1.5 1 0 0 1 1 1 1 HalX domain TolA_bind_tri PF16331.5 gi|313117378|ref|YP_004044361.1| - 0.022 14.8 1.6 0.04 14.0 1.6 1.4 1 0 0 1 1 1 0 TolA binding protein trimerisation AIG1 PF04548.16 gi|313117378|ref|YP_004044361.1| - 0.04 13.2 0.7 0.055 12.8 0.7 1.2 1 0 0 1 1 1 0 AIG1 family Orbi_VP5 PF00901.17 gi|313117378|ref|YP_004044361.1| - 0.067 11.6 0.2 0.086 11.2 0.2 1.2 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 DAHP_snth_FXD PF18152.1 gi|313117378|ref|YP_004044361.1| - 0.088 12.7 0.1 5.9 6.8 0.0 2.7 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain IF-2B PF01008.17 gi|313117378|ref|YP_004044361.1| - 0.11 11.7 0.5 0.46 9.6 0.0 1.8 2 0 0 2 2 2 0 Initiation factor 2 subunit family ATG16 PF08614.11 gi|313117380|ref|YP_004044363.1| - 6.1e-05 23.3 10.5 6.1e-05 23.3 10.5 2.8 2 1 0 2 2 2 1 Autophagy protein 16 (ATG16) DUF3584 PF12128.8 gi|313117380|ref|YP_004044363.1| - 0.0025 15.4 8.6 0.0036 14.9 8.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|313117380|ref|YP_004044363.1| - 0.0056 16.7 4.4 0.0056 16.7 4.4 2.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|313117380|ref|YP_004044363.1| - 0.012 15.7 11.0 0.28 11.2 0.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|313117380|ref|YP_004044363.1| - 0.024 14.9 4.2 0.024 14.9 4.2 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Apolipoprotein PF01442.18 gi|313117380|ref|YP_004044363.1| - 0.04 13.8 15.0 0.23 11.3 12.3 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain KELK PF15796.5 gi|313117380|ref|YP_004044363.1| - 0.041 14.3 0.2 0.041 14.3 0.2 3.0 2 1 0 2 2 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Atg14 PF10186.9 gi|313117380|ref|YP_004044363.1| - 0.044 12.9 7.2 0.12 11.4 7.3 1.6 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|313117380|ref|YP_004044363.1| - 0.046 13.3 2.5 0.071 12.7 2.5 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit ApoLp-III PF07464.11 gi|313117380|ref|YP_004044363.1| - 0.048 13.7 9.8 0.13 12.3 9.8 1.7 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF724 PF05266.14 gi|313117380|ref|YP_004044363.1| - 0.06 13.2 7.9 0.96 9.2 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Spc7 PF08317.11 gi|313117380|ref|YP_004044363.1| - 0.073 11.9 16.5 0.64 8.8 7.0 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein Nup54 PF13874.6 gi|313117380|ref|YP_004044363.1| - 0.079 13.1 10.6 0.033 14.3 1.3 2.7 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Prefoldin_2 PF01920.20 gi|313117380|ref|YP_004044363.1| - 0.1 12.6 15.2 4.7 7.2 0.8 4.0 2 1 0 3 3 3 0 Prefoldin subunit HAUS-augmin3 PF14932.6 gi|313117380|ref|YP_004044363.1| - 0.11 12.0 13.4 0.017 14.7 7.1 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Tropomyosin PF00261.20 gi|313117380|ref|YP_004044363.1| - 0.18 11.2 13.4 0.025 14.0 6.1 2.4 1 1 1 2 2 2 0 Tropomyosin Cep57_CLD_2 PF14197.6 gi|313117380|ref|YP_004044363.1| - 0.23 11.6 13.2 3.1 7.9 0.7 3.2 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.9 gi|313117380|ref|YP_004044363.1| - 0.25 11.4 18.3 0.13 12.3 9.7 2.7 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2353 PF09789.9 gi|313117380|ref|YP_004044363.1| - 0.27 10.5 13.6 0.18 11.1 0.9 2.3 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) Snapin_Pallidin PF14712.6 gi|313117380|ref|YP_004044363.1| - 0.28 11.6 13.4 0.16 12.4 3.6 3.0 1 1 2 3 3 3 0 Snapin/Pallidin Prominin PF05478.11 gi|313117380|ref|YP_004044363.1| - 0.39 8.6 3.6 0.57 8.1 3.6 1.3 1 0 0 1 1 1 0 Prominin Med28 PF11594.8 gi|313117380|ref|YP_004044363.1| - 0.4 10.7 7.7 0.5 10.4 4.1 2.7 3 1 1 4 4 2 0 Mediator complex subunit 28 EzrA PF06160.12 gi|313117380|ref|YP_004044363.1| - 0.69 8.0 13.9 0.081 11.1 0.5 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA HSCB_C PF07743.13 gi|313117380|ref|YP_004044363.1| - 0.76 10.3 13.0 0.07 13.6 1.7 3.4 1 1 1 3 3 3 0 HSCB C-terminal oligomerisation domain ABC_tran_CTD PF16326.5 gi|313117380|ref|YP_004044363.1| - 0.78 10.0 18.3 2.3 8.5 2.1 4.5 1 1 2 3 3 3 0 ABC transporter C-terminal domain MIF4G_like_2 PF09090.11 gi|313117380|ref|YP_004044363.1| - 0.83 9.1 6.5 1.9 7.9 6.5 1.6 1 0 0 1 1 1 0 MIF4G like Fib_alpha PF08702.10 gi|313117380|ref|YP_004044363.1| - 0.87 9.8 9.0 0.63 10.2 5.5 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4164 PF13747.6 gi|313117380|ref|YP_004044363.1| - 0.9 9.9 13.4 0.22 11.8 6.5 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) GTP-bdg_M PF16360.5 gi|313117380|ref|YP_004044363.1| - 1.4 9.6 7.3 0.46 11.1 0.2 3.0 1 1 2 3 3 3 0 GTP-binding GTPase Middle Region NPV_P10 PF05531.12 gi|313117380|ref|YP_004044363.1| - 1.8 9.1 15.3 47 4.5 0.3 3.7 2 1 2 4 4 3 0 Nucleopolyhedrovirus P10 protein CorA PF01544.18 gi|313117380|ref|YP_004044363.1| - 2.2 7.5 9.9 3.8 6.7 9.4 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein GAS PF13851.6 gi|313117380|ref|YP_004044363.1| - 2.3 7.5 10.8 92 2.3 11.1 2.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding CENP-H PF05837.12 gi|313117380|ref|YP_004044363.1| - 2.3 8.7 11.8 0.51 10.8 3.1 2.6 1 1 1 2 2 2 0 Centromere protein H (CENP-H) APG6_N PF17675.1 gi|313117380|ref|YP_004044363.1| - 2.3 8.7 20.7 0.34 11.4 3.0 3.3 1 1 1 2 2 2 0 Apg6 coiled-coil region PRKG1_interact PF15898.5 gi|313117380|ref|YP_004044363.1| - 2.5 9.0 16.2 2.9 8.9 6.6 3.0 2 1 1 3 3 2 0 cGMP-dependent protein kinase interacting domain TMPIT PF07851.13 gi|313117380|ref|YP_004044363.1| - 2.9 7.1 5.8 0.68 9.1 1.7 1.8 1 1 1 2 2 2 0 TMPIT-like protein SPATA1_C PF15743.5 gi|313117380|ref|YP_004044363.1| - 3.4 7.7 8.3 0.29 11.2 0.2 2.6 2 1 0 2 2 2 0 Spermatogenesis-associated C-terminus YabA PF06156.13 gi|313117380|ref|YP_004044363.1| - 4.1 8.1 14.6 2.4 8.8 1.1 3.0 2 1 1 3 3 2 0 Initiation control protein YabA MscS_porin PF12795.7 gi|313117380|ref|YP_004044363.1| - 4.6 6.7 20.5 1.1 8.8 16.3 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Tropomyosin_1 PF12718.7 gi|313117380|ref|YP_004044363.1| - 5 7.3 16.7 1.1e+02 2.9 16.8 2.8 1 1 0 1 1 1 0 Tropomyosin like FliT PF05400.13 gi|313117380|ref|YP_004044363.1| - 5.4 7.9 11.4 0.88 10.4 4.5 3.1 1 1 1 2 2 2 0 Flagellar protein FliT Sec34 PF04136.15 gi|313117380|ref|YP_004044363.1| - 5.5 6.8 10.0 3.4 7.6 3.0 2.7 2 1 1 3 3 2 0 Sec34-like family V_ATPase_I PF01496.19 gi|313117380|ref|YP_004044363.1| - 7.1 4.4 6.4 14 3.4 6.2 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family CCDC-167 PF15188.6 gi|313117380|ref|YP_004044363.1| - 7.7 6.9 16.0 0.73 10.2 1.9 3.2 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 ACCA PF03255.14 gi|313117380|ref|YP_004044363.1| - 8.7 6.2 7.5 0.69 9.8 0.6 2.4 2 1 1 3 3 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit T2SSN PF01203.19 gi|313117381|ref|YP_004044364.1| - 6.7e-05 23.2 7.2 0.049 13.9 1.2 2.9 2 1 1 3 3 3 2 Type II secretion system (T2SS), protein N Sarcoglycan_1 PF04790.13 gi|313117381|ref|YP_004044364.1| - 0.00047 19.6 13.7 0.33 10.3 0.6 4.4 1 1 1 3 3 3 3 Sarcoglycan complex subunit protein ASH PF15780.5 gi|313117381|ref|YP_004044364.1| - 0.087 13.0 1.4 0.31 11.3 0.1 2.6 2 0 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF945 PF06097.11 gi|313117381|ref|YP_004044364.1| - 0.098 11.7 3.3 0.22 10.6 3.3 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) Poly_export PF02563.16 gi|313117381|ref|YP_004044364.1| - 0.13 12.5 1.4 1.6 9.0 0.2 3.1 1 1 1 2 2 2 0 Polysaccharide biosynthesis/export protein DUF3971 PF13116.6 gi|313117381|ref|YP_004044364.1| - 0.89 9.1 3.0 5.5 6.5 0.3 3.0 1 1 2 3 3 3 0 Protein of unknown function Peptidase_S24 PF00717.23 gi|313117382|ref|YP_004044365.1| - 9.5e-08 31.9 0.5 2.3e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 Peptidase S24-like TrbC PF04956.13 gi|313117382|ref|YP_004044365.1| - 6.2 7.1 23.3 0.093 13.0 4.0 3.6 4 0 0 4 4 4 0 TrbC/VIRB2 family DUF3446 PF11928.8 gi|313117383|ref|YP_004044366.1| - 0.04 14.2 0.8 0.057 13.7 0.1 1.7 2 0 0 2 2 2 0 Early growth response N-terminal domain DUF4232 PF14016.6 gi|313117383|ref|YP_004044366.1| - 0.11 12.6 9.9 0.52 10.5 3.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) Cadherin-like PF12733.7 gi|313117383|ref|YP_004044366.1| - 3 8.4 7.3 0.65 10.6 2.4 2.3 1 1 2 3 3 3 0 Cadherin-like beta sandwich domain HlyIII PF03006.20 gi|313117386|ref|YP_004044369.1| - 0.032 13.9 0.4 0.047 13.4 0.4 1.2 1 0 0 1 1 1 0 Haemolysin-III related DUF5305 PF17231.2 gi|313117387|ref|YP_004044370.1| - 1.6e-46 158.5 0.2 7.6e-45 153.0 0.0 2.2 2 0 0 2 2 2 2 Family of unknown function (DUF5305) T2SSM PF04612.12 gi|313117387|ref|YP_004044370.1| - 0.053 13.6 0.2 2.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF4131 PF13567.6 gi|313117387|ref|YP_004044370.1| - 0.12 12.1 0.7 0.3 10.7 0.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) OppC_N PF12911.7 gi|313117388|ref|YP_004044371.1| - 0.22 11.6 0.8 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C FtsA PF14450.6 gi|313117389|ref|YP_004044372.1| - 0.0016 18.9 0.0 0.005 17.2 0.0 1.8 2 0 0 2 2 2 1 Cell division protein FtsA NPR3 PF03666.13 gi|313117389|ref|YP_004044372.1| - 5.9 5.6 8.0 8 5.1 8.0 1.2 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 zf-FPG_IleRS PF06827.14 gi|313117390|ref|YP_004044373.1| - 0.00068 19.4 2.5 0.0015 18.3 2.5 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|313117390|ref|YP_004044373.1| - 0.00079 18.7 1.5 0.0015 17.8 1.5 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|313117390|ref|YP_004044373.1| - 0.016 15.6 0.5 0.023 15.0 0.5 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|313117390|ref|YP_004044373.1| - 0.026 14.5 0.8 0.042 13.8 0.8 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_6 PF14835.6 gi|313117390|ref|YP_004044373.1| - 0.059 13.2 0.1 0.075 12.9 0.1 1.3 1 0 0 1 1 1 0 zf-RING of BARD1-type protein HTH_10 PF04967.12 gi|313117391|ref|YP_004044374.1| - 1.4e-22 79.2 0.0 6.1e-22 77.2 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain BAT PF15915.5 gi|313117391|ref|YP_004044374.1| - 3.2e-19 69.3 3.8 3.2e-19 69.3 3.8 2.9 4 0 0 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|313117391|ref|YP_004044374.1| - 7.9e-13 48.9 3.5 3.2e-08 34.0 0.2 2.7 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.6 gi|313117391|ref|YP_004044374.1| - 2.3e-08 34.4 0.7 0.0089 16.4 0.1 2.6 2 0 0 2 2 2 2 GAF domain HTH_1 PF00126.27 gi|313117391|ref|YP_004044374.1| - 6.3e-05 22.8 0.0 0.00027 20.8 0.0 2.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GAF PF01590.26 gi|313117391|ref|YP_004044374.1| - 0.00012 22.8 0.2 0.00048 20.8 0.1 2.1 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|313117391|ref|YP_004044374.1| - 0.00039 19.9 0.0 0.0012 18.3 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|313117391|ref|YP_004044374.1| - 0.0017 17.9 0.0 0.13 11.8 0.0 3.1 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|313117391|ref|YP_004044374.1| - 0.0053 16.6 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|313117391|ref|YP_004044374.1| - 0.033 13.7 0.0 0.083 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF5119 PF17145.4 gi|313117391|ref|YP_004044374.1| - 0.039 13.9 0.0 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5119) MSC PF09402.10 gi|313117391|ref|YP_004044374.1| - 0.17 11.3 0.2 0.27 10.6 0.2 1.3 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain HalOD1 PF18545.1 gi|313117392|ref|YP_004044375.1| - 9e-18 64.3 0.0 1.1e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Seryl_tRNA_N PF02403.22 gi|313117393|ref|YP_004044376.1| - 2e-06 28.0 63.0 0.00029 21.0 6.1 5.6 2 2 4 6 6 6 4 Seryl-tRNA synthetase N-terminal domain AAA_23 PF13476.6 gi|313117393|ref|YP_004044376.1| - 3.8e-06 27.6 24.8 3.8e-06 27.6 24.8 4.8 1 1 1 3 3 2 1 AAA domain DUF4407 PF14362.6 gi|313117393|ref|YP_004044376.1| - 4.1e-05 23.1 56.1 0.0059 16.0 24.4 3.2 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) Spc7 PF08317.11 gi|313117393|ref|YP_004044376.1| - 6.3e-05 22.0 80.2 0.0098 14.8 27.0 4.1 2 2 2 4 4 4 3 Spc7 kinetochore protein DUF1664 PF07889.12 gi|313117393|ref|YP_004044376.1| - 0.00012 22.2 44.8 0.025 14.6 4.4 6.0 3 2 3 6 6 6 3 Protein of unknown function (DUF1664) ERM PF00769.19 gi|313117393|ref|YP_004044376.1| - 0.00014 21.8 77.9 0.0069 16.2 30.1 2.4 1 1 1 2 2 2 2 Ezrin/radixin/moesin family GAS PF13851.6 gi|313117393|ref|YP_004044376.1| - 0.0016 17.9 71.0 0.0035 16.7 11.6 4.1 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding HemX PF04375.14 gi|313117393|ref|YP_004044376.1| - 0.0038 16.6 11.7 0.0038 16.6 11.7 4.3 2 2 2 4 4 4 1 HemX, putative uroporphyrinogen-III C-methyltransferase ATG16 PF08614.11 gi|313117393|ref|YP_004044376.1| - 0.0059 16.9 87.3 0.038 14.2 27.6 5.2 2 2 2 4 4 4 2 Autophagy protein 16 (ATG16) UPF0242 PF06785.11 gi|313117393|ref|YP_004044376.1| - 0.0094 16.1 14.2 0.0094 16.1 14.2 4.9 2 2 2 4 4 4 1 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|313117393|ref|YP_004044376.1| - 0.027 13.6 64.3 0.22 10.6 4.0 4.2 1 1 3 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 Snapin_Pallidin PF14712.6 gi|313117393|ref|YP_004044376.1| - 0.077 13.4 55.8 0.038 14.4 5.8 6.2 2 2 4 6 6 6 0 Snapin/Pallidin DHR10 PF18595.1 gi|313117393|ref|YP_004044376.1| - 0.095 12.8 92.2 1 9.4 21.2 5.4 2 2 3 5 5 5 0 Designed helical repeat protein 10 domain HSBP1 PF06825.12 gi|313117393|ref|YP_004044376.1| - 0.15 11.9 0.2 0.15 11.9 0.2 5.7 6 1 0 6 6 5 0 Heat shock factor binding protein 1 DUF4201 PF13870.6 gi|313117393|ref|YP_004044376.1| - 0.22 11.3 63.3 2.1 8.1 13.8 4.9 2 2 1 4 4 4 0 Domain of unknown function (DUF4201) Laminin_II PF06009.12 gi|313117393|ref|YP_004044376.1| - 0.35 10.9 46.0 0.19 11.8 2.5 4.9 2 2 3 5 5 5 0 Laminin Domain II APG6_N PF17675.1 gi|313117393|ref|YP_004044376.1| - 1 9.9 98.0 0.22 12.1 41.3 5.6 1 1 4 5 5 5 0 Apg6 coiled-coil region DUF948 PF06103.11 gi|313117393|ref|YP_004044376.1| - 1.2 9.4 27.3 1.5 9.1 1.9 5.5 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) MAP65_ASE1 PF03999.12 gi|313117393|ref|YP_004044376.1| - 1.4 7.5 52.6 0.037 12.7 12.9 2.6 2 1 0 2 2 2 0 Microtubule associated protein (MAP65/ASE1 family) TPR_MLP1_2 PF07926.12 gi|313117393|ref|YP_004044376.1| - 2.1 8.4 82.3 0.99 9.5 7.0 5.1 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein MAD PF05557.13 gi|313117393|ref|YP_004044376.1| - 2.5 6.3 68.0 1.8 6.8 21.3 2.4 2 0 0 2 2 2 0 Mitotic checkpoint protein IMPa_helical PF18642.1 gi|313117393|ref|YP_004044376.1| - 3.4 8.1 8.6 24 5.4 0.1 4.4 4 1 1 5 5 4 0 Immunomodulating metalloprotease helical domain BLOC1_2 PF10046.9 gi|313117393|ref|YP_004044376.1| - 4.3 7.7 52.4 0.96 9.8 4.1 6.3 2 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3584 PF12128.8 gi|313117393|ref|YP_004044376.1| - 4.6 4.6 72.1 0.51 7.8 24.2 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF3584) NPV_P10 PF05531.12 gi|313117393|ref|YP_004044376.1| - 5 7.7 37.7 3.6 8.1 1.3 6.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Golgin_A5 PF09787.9 gi|313117393|ref|YP_004044376.1| - 5.4 6.4 84.0 1.6 8.2 30.1 3.7 1 1 3 4 4 4 0 Golgin subfamily A member 5 AAA_15 PF13175.6 gi|313117393|ref|YP_004044376.1| - 7.4 6.2 37.5 15 5.1 19.5 3.2 1 1 1 2 2 2 0 AAA ATPase domain CENP-F_leu_zip PF10473.9 gi|313117393|ref|YP_004044376.1| - 8.9 6.3 88.1 0.21 11.6 10.7 4.6 2 2 2 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CALCOCO1 PF07888.11 gi|313117393|ref|YP_004044376.1| - 9.6 4.9 74.7 5.3 5.8 21.8 2.2 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like HalX PF08663.10 gi|313117396|ref|YP_004044379.1| - 4.7e-12 46.1 13.2 1.3e-11 44.6 12.8 1.9 1 1 0 1 1 1 1 HalX domain Erp_C PF06780.11 gi|313117396|ref|YP_004044379.1| - 0.0012 18.8 0.8 0.0015 18.6 0.8 1.1 1 0 0 1 1 1 1 Erp protein C-terminus SPAM PF02090.15 gi|313117396|ref|YP_004044379.1| - 0.0032 17.3 3.4 0.0046 16.8 3.4 1.3 1 0 0 1 1 1 1 Salmonella surface presentation of antigen gene type M protein ADSL_C PF10397.9 gi|313117396|ref|YP_004044379.1| - 0.46 11.1 4.6 0.28 11.8 1.7 1.9 1 1 1 2 2 2 0 Adenylosuccinate lyase C-terminus Atg14 PF10186.9 gi|313117396|ref|YP_004044379.1| - 0.75 8.8 7.8 0.8 8.7 7.8 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Response_reg PF00072.24 gi|313117397|ref|YP_004044380.1| - 1.6e-13 50.8 0.2 2e-13 50.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|313117399|ref|YP_004044382.1| - 9.9e-23 80.5 0.5 1.5e-12 47.7 0.1 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|313117399|ref|YP_004044382.1| - 4.1e-19 69.1 0.0 7.6e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|313117399|ref|YP_004044382.1| - 3.7e-11 43.2 0.0 0.00041 20.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|313117399|ref|YP_004044382.1| - 1.3e-10 41.2 0.0 2.3e-08 34.0 0.0 2.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|313117399|ref|YP_004044382.1| - 4.7e-07 29.8 0.7 4.7e-07 29.8 0.7 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|313117399|ref|YP_004044382.1| - 6.1e-07 29.4 0.1 1.6e-06 28.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|313117399|ref|YP_004044382.1| - 3.3e-06 26.7 1.1 7.6e-06 25.6 1.1 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|313117399|ref|YP_004044382.1| - 5.6e-06 26.2 0.0 1.3e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|313117399|ref|YP_004044382.1| - 2e-05 24.2 0.0 4.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_10 PF13596.6 gi|313117399|ref|YP_004044382.1| - 0.0004 20.9 0.0 0.67 10.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|313117399|ref|YP_004044382.1| - 0.007 16.6 0.1 1.1 9.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold dCache_1 PF02743.18 gi|313117399|ref|YP_004044382.1| - 0.02 14.7 0.2 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Cache domain YojJ PF10372.9 gi|313117399|ref|YP_004044382.1| - 0.024 14.7 1.4 0.84 9.8 0.1 3.1 2 1 1 3 3 3 0 Bacterial membrane-spanning protein N-terminus PAS_8 PF13188.7 gi|313117399|ref|YP_004044382.1| - 0.11 12.6 0.0 0.49 10.5 0.0 2.1 2 0 0 2 2 1 0 PAS domain AIF-MLS PF14962.6 gi|313117399|ref|YP_004044382.1| - 0.25 11.3 4.6 0.075 13.0 1.6 1.6 2 0 0 2 2 2 0 Mitochondria Localisation Sequence p450 PF00067.22 gi|313117400|ref|YP_004044383.1| - 7.3e-91 305.2 0.0 8.3e-91 305.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Pr_beta_C PF12465.8 gi|313117400|ref|YP_004044383.1| - 0.083 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Proteasome beta subunits C terminal HTH_10 PF04967.12 gi|313117401|ref|YP_004044384.1| - 1.1e-18 66.8 0.0 2.1e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|313117401|ref|YP_004044384.1| - 0.0063 16.2 0.1 0.35 10.6 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|313117401|ref|YP_004044384.1| - 0.015 15.1 0.1 0.067 13.0 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|313117401|ref|YP_004044384.1| - 0.028 13.9 0.1 0.14 11.7 0.0 2.1 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|313117401|ref|YP_004044384.1| - 0.034 14.2 0.0 0.092 12.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|313117401|ref|YP_004044384.1| - 0.063 12.8 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|313117401|ref|YP_004044384.1| - 0.089 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain SpoIIID PF12116.8 gi|313117401|ref|YP_004044384.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D ZnuA PF01297.17 gi|313117402|ref|YP_004044385.1| - 1.4e-41 142.6 0.1 1.7e-41 142.3 0.1 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|313117403|ref|YP_004044386.1| - 4.8e-31 108.1 0.0 6.5e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117403|ref|YP_004044386.1| - 1e-11 45.3 0.5 6e-05 23.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313117403|ref|YP_004044386.1| - 2.9e-05 23.6 0.4 0.001 18.6 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|313117403|ref|YP_004044386.1| - 8e-05 22.3 0.1 0.00017 21.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|313117403|ref|YP_004044386.1| - 0.00067 20.0 0.3 0.0092 16.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|313117403|ref|YP_004044386.1| - 0.0011 18.8 0.0 0.0019 18.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|313117403|ref|YP_004044386.1| - 0.0015 18.3 0.0 0.003 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|313117403|ref|YP_004044386.1| - 0.0015 17.4 0.4 0.39 9.4 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|313117403|ref|YP_004044386.1| - 0.005 17.2 0.0 0.0085 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|313117403|ref|YP_004044386.1| - 0.021 15.3 0.0 0.032 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|313117403|ref|YP_004044386.1| - 0.027 14.4 0.1 0.16 11.9 0.1 2.0 1 1 0 1 1 1 0 NTPase SbcCD_C PF13558.6 gi|313117403|ref|YP_004044386.1| - 0.049 13.9 0.3 0.89 9.8 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MeaB PF03308.16 gi|313117403|ref|YP_004044386.1| - 0.062 12.3 0.0 0.085 11.8 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Spore_IV_A PF09547.10 gi|313117403|ref|YP_004044386.1| - 0.072 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) MMR_HSR1 PF01926.23 gi|313117403|ref|YP_004044386.1| - 0.075 13.1 0.1 0.21 11.7 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|313117403|ref|YP_004044386.1| - 0.083 13.0 0.1 0.14 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|313117403|ref|YP_004044386.1| - 0.085 12.9 0.2 0.22 11.6 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|313117403|ref|YP_004044386.1| - 0.089 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Septin PF00735.18 gi|313117403|ref|YP_004044386.1| - 0.15 11.3 0.0 13 5.0 0.0 2.1 2 0 0 2 2 2 0 Septin AAA_27 PF13514.6 gi|313117403|ref|YP_004044386.1| - 0.16 11.5 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|313117403|ref|YP_004044386.1| - 0.2 10.7 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ABC-3 PF00950.17 gi|313117404|ref|YP_004044387.1| - 1e-55 189.1 40.6 1.2e-55 188.9 40.6 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|313117404|ref|YP_004044387.1| - 0.00033 19.8 36.9 0.00033 19.8 36.9 1.8 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.6 gi|313117404|ref|YP_004044387.1| - 0.11 12.7 1.0 0.28 11.4 1.0 1.6 1 0 0 1 1 1 0 DUF2407 C-terminal domain Fe_dep_repr_C PF02742.15 gi|313117405|ref|YP_004044388.1| - 1.6e-20 73.0 0.3 3.2e-20 72.0 0.3 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|313117405|ref|YP_004044388.1| - 9e-17 61.0 0.0 1.8e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|313117405|ref|YP_004044388.1| - 1.3e-11 44.3 0.3 2.8e-10 40.0 0.2 2.5 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|313117405|ref|YP_004044388.1| - 1.5e-10 40.8 0.3 9.3e-09 35.1 0.0 2.8 3 0 0 3 3 2 1 MarR family FeoA PF04023.14 gi|313117405|ref|YP_004044388.1| - 7.5e-09 35.7 0.1 1.8e-08 34.5 0.1 1.7 1 0 0 1 1 1 1 FeoA domain MarR PF01047.22 gi|313117405|ref|YP_004044388.1| - 1.3e-08 34.7 0.3 5.4e-08 32.6 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|313117405|ref|YP_004044388.1| - 4e-08 32.7 0.1 8.6e-08 31.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|313117405|ref|YP_004044388.1| - 9.8e-08 31.7 6.2 3e-07 30.1 0.1 3.3 4 0 0 4 4 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313117405|ref|YP_004044388.1| - 7.4e-07 29.1 0.0 5e-05 23.3 0.1 2.8 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|313117405|ref|YP_004044388.1| - 4.4e-06 27.1 0.6 1.2e-05 25.7 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain Crp PF00325.20 gi|313117405|ref|YP_004044388.1| - 8.2e-06 25.4 0.4 1.8e-05 24.3 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, crp family HTH_11 PF08279.12 gi|313117405|ref|YP_004044388.1| - 1.3e-05 25.1 0.2 2.2e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|313117405|ref|YP_004044388.1| - 1.6e-05 24.7 0.3 8.4e-05 22.4 0.0 2.3 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|313117405|ref|YP_004044388.1| - 5.6e-05 22.6 0.2 0.23 11.0 0.0 2.8 3 0 0 3 3 2 2 Sigma-70, region 4 Rrf2 PF02082.20 gi|313117405|ref|YP_004044388.1| - 7.5e-05 23.0 0.0 0.00042 20.6 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_23 PF13384.6 gi|313117405|ref|YP_004044388.1| - 0.00021 21.0 0.0 0.00082 19.1 0.0 2.0 2 1 0 2 2 1 1 Homeodomain-like domain GntR PF00392.21 gi|313117405|ref|YP_004044388.1| - 0.00041 19.9 0.1 0.00079 19.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 gi|313117405|ref|YP_004044388.1| - 0.00076 19.0 0.3 0.0018 17.8 0.2 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|313117405|ref|YP_004044388.1| - 0.00093 19.0 0.0 0.003 17.4 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|313117405|ref|YP_004044388.1| - 0.0011 18.7 0.1 0.0032 17.3 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|313117405|ref|YP_004044388.1| - 0.0036 17.3 0.1 0.0086 16.1 0.1 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_36 PF13730.6 gi|313117405|ref|YP_004044388.1| - 0.0036 17.2 0.0 0.0058 16.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|313117405|ref|YP_004044388.1| - 0.01 15.8 0.1 0.018 15.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix FeoC PF09012.10 gi|313117405|ref|YP_004044388.1| - 0.01 15.9 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator FaeA PF04703.12 gi|313117405|ref|YP_004044388.1| - 0.015 15.6 0.0 0.031 14.7 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Sigma70_r3 PF04539.16 gi|313117405|ref|YP_004044388.1| - 0.017 15.2 0.5 0.062 13.4 0.1 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 LacI PF00356.21 gi|313117405|ref|YP_004044388.1| - 0.028 14.2 0.5 0.086 12.6 0.2 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family DUF4423 PF14394.6 gi|313117405|ref|YP_004044388.1| - 0.028 14.1 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|313117405|ref|YP_004044388.1| - 0.03 14.2 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit LexA_DNA_bind PF01726.16 gi|313117405|ref|YP_004044388.1| - 0.041 13.6 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 1 0 LexA DNA binding domain TetR_N PF00440.23 gi|313117405|ref|YP_004044388.1| - 0.045 13.5 0.3 0.51 10.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF2250 PF10007.9 gi|313117405|ref|YP_004044388.1| - 0.066 13.3 0.0 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.22 gi|313117405|ref|YP_004044388.1| - 0.081 13.0 0.0 0.71 10.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix HTH_38 PF13936.6 gi|313117405|ref|YP_004044388.1| - 0.11 12.3 0.1 0.35 10.7 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain TBPIP PF07106.13 gi|313117405|ref|YP_004044388.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Sigma70_r4_2 PF08281.12 gi|313117405|ref|YP_004044388.1| - 0.11 12.2 0.0 0.49 10.1 0.0 2.2 1 0 0 1 1 1 0 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|313117405|ref|YP_004044388.1| - 0.12 12.3 0.0 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT EAP30 PF04157.16 gi|313117405|ref|YP_004044388.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_1 PF00126.27 gi|313117405|ref|YP_004044388.1| - 0.15 12.0 0.3 0.87 9.6 0.0 2.5 3 1 0 3 3 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_terminase PF10668.9 gi|313117405|ref|YP_004044388.1| - 0.18 11.8 0.0 0.73 9.9 0.0 1.8 2 0 0 2 2 2 0 Phage terminase small subunit SgrR_N PF12793.7 gi|313117405|ref|YP_004044388.1| - 0.22 11.7 0.1 0.72 10.1 0.0 1.8 2 0 0 2 2 2 0 Sugar transport-related sRNA regulator N-term PgpA PF04608.13 gi|313117406|ref|YP_004044389.1| - 3.3e-29 101.7 1.6 3.8e-29 101.6 1.6 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A ABC_tran PF00005.27 gi|313117407|ref|YP_004044390.1| - 7.6e-31 107.5 0.0 1.4e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117407|ref|YP_004044390.1| - 3.1e-07 30.5 0.1 0.012 15.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|313117407|ref|YP_004044390.1| - 3.6e-06 27.4 0.3 5.5e-05 23.6 0.2 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|313117407|ref|YP_004044390.1| - 0.0011 19.1 0.0 0.0024 18.0 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|313117407|ref|YP_004044390.1| - 0.0011 19.3 0.2 0.0045 17.4 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|313117407|ref|YP_004044390.1| - 0.0013 18.7 1.2 0.031 14.3 0.1 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|313117407|ref|YP_004044390.1| - 0.0051 17.1 0.3 0.016 15.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313117407|ref|YP_004044390.1| - 0.0055 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|313117407|ref|YP_004044390.1| - 0.019 15.4 0.0 0.043 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|313117407|ref|YP_004044390.1| - 0.02 14.7 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|313117407|ref|YP_004044390.1| - 0.02 15.1 0.3 0.075 13.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313117407|ref|YP_004044390.1| - 0.022 14.5 0.0 0.048 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|313117407|ref|YP_004044390.1| - 0.025 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|313117407|ref|YP_004044390.1| - 0.026 13.7 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.6 gi|313117407|ref|YP_004044390.1| - 0.032 14.5 0.6 0.16 12.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|313117407|ref|YP_004044390.1| - 0.033 13.0 0.1 0.08 11.7 0.0 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|313117407|ref|YP_004044390.1| - 0.037 13.8 0.3 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|313117407|ref|YP_004044390.1| - 0.063 13.5 0.1 0.26 11.5 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313117407|ref|YP_004044390.1| - 0.063 12.8 0.2 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|313117407|ref|YP_004044390.1| - 0.072 12.5 0.0 5.8 6.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TsaE PF02367.17 gi|313117407|ref|YP_004044390.1| - 0.073 13.1 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|313117407|ref|YP_004044390.1| - 0.081 12.8 0.1 0.18 11.7 0.0 1.6 2 0 0 2 2 1 0 NACHT domain Mg_chelatase PF01078.21 gi|313117407|ref|YP_004044390.1| - 0.099 12.0 0.0 0.22 10.9 0.0 1.5 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|313117407|ref|YP_004044390.1| - 0.12 12.1 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|313117407|ref|YP_004044390.1| - 0.15 11.9 0.0 0.35 10.8 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|313117407|ref|YP_004044390.1| - 0.16 12.5 0.7 0.33 11.5 0.3 1.7 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.9 gi|313117407|ref|YP_004044390.1| - 0.17 11.6 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.6 gi|313117407|ref|YP_004044390.1| - 0.18 11.8 0.5 2.4 8.2 0.1 2.6 2 2 1 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|313117407|ref|YP_004044390.1| - 0.2 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|313117408|ref|YP_004044391.1| - 5.9e-16 58.7 11.0 1.1e-15 57.8 11.0 1.6 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|313117409|ref|YP_004044392.1| - 1.1e-47 162.8 0.7 2e-47 162.0 0.2 1.5 2 0 0 2 2 2 1 NMT1-like family Phosphonate-bd PF12974.7 gi|313117409|ref|YP_004044392.1| - 0.0095 15.5 0.2 0.02 14.5 0.1 1.6 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DS PF01916.17 gi|313117410|ref|YP_004044393.1| - 2.1e-100 335.7 0.0 2.4e-100 335.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ABC_tran PF00005.27 gi|313117411|ref|YP_004044394.1| - 1.4e-29 103.3 0.0 3.2e-29 102.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|313117411|ref|YP_004044394.1| - 1.3e-10 41.6 6.6 2.8e-07 30.7 0.2 2.6 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313117411|ref|YP_004044394.1| - 2.6e-07 31.2 1.0 7.1e-07 29.9 1.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|313117411|ref|YP_004044394.1| - 0.00024 21.6 0.2 0.00091 19.6 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|313117411|ref|YP_004044394.1| - 0.016 14.9 0.3 0.045 13.5 0.3 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|313117411|ref|YP_004044394.1| - 0.017 15.4 0.6 0.15 12.3 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|313117411|ref|YP_004044394.1| - 0.02 15.4 1.5 0.039 14.5 1.5 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|313117411|ref|YP_004044394.1| - 0.026 14.9 0.1 0.081 13.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|313117411|ref|YP_004044394.1| - 0.035 13.8 0.1 0.08 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|313117411|ref|YP_004044394.1| - 0.05 13.5 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_19 PF13245.6 gi|313117411|ref|YP_004044394.1| - 0.054 13.8 0.1 0.086 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|313117411|ref|YP_004044394.1| - 0.072 12.8 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|313117411|ref|YP_004044394.1| - 0.08 12.7 0.1 0.22 11.3 0.1 1.7 2 0 0 2 2 2 0 MukB N-terminal SRP54 PF00448.22 gi|313117411|ref|YP_004044394.1| - 0.097 12.3 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|313117411|ref|YP_004044394.1| - 0.13 11.7 0.8 0.56 9.6 0.8 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Radical_SAM PF04055.21 gi|313117411|ref|YP_004044394.1| - 1 9.7 3.4 2.1 8.7 3.2 1.7 1 1 0 1 1 1 0 Radical SAM superfamily ABC2_membrane_3 PF12698.7 gi|313117412|ref|YP_004044395.1| - 0.00064 18.9 27.3 0.0021 17.2 27.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|313117412|ref|YP_004044395.1| - 0.27 10.5 21.0 0.58 9.4 17.3 2.5 1 1 1 2 2 2 0 ABC-2 family transporter protein PIG-F PF06699.11 gi|313117412|ref|YP_004044395.1| - 0.45 10.7 10.3 0.51 10.5 9.3 1.6 1 1 0 1 1 1 0 GPI biosynthesis protein family Pig-F PAS_3 PF08447.12 gi|313117413|ref|YP_004044396.1| - 9.2e-33 112.4 1.6 7.1e-18 64.7 0.2 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313117413|ref|YP_004044396.1| - 6.7e-17 61.7 0.2 7.6e-08 32.5 0.0 3.7 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|313117413|ref|YP_004044396.1| - 1.1e-16 61.3 0.1 2.4e-16 60.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|313117413|ref|YP_004044396.1| - 6.9e-15 54.8 2.2 2.7e-14 52.9 0.1 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|313117413|ref|YP_004044396.1| - 1.5e-13 51.0 5.2 1.2e-05 25.6 0.3 3.7 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.6 gi|313117413|ref|YP_004044396.1| - 1.4e-08 35.2 0.8 1.5e-07 31.8 0.2 2.7 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|313117413|ref|YP_004044396.1| - 7e-06 26.0 3.3 0.007 16.3 0.1 3.3 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|313117413|ref|YP_004044396.1| - 6.1e-05 22.9 0.4 0.016 15.3 0.0 3.2 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.6 gi|313117413|ref|YP_004044396.1| - 0.0033 17.3 0.0 0.0095 15.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|313117413|ref|YP_004044396.1| - 0.005 17.2 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 GAF domain ZapB PF06005.12 gi|313117413|ref|YP_004044396.1| - 0.0057 17.1 6.0 0.19 12.2 0.0 3.9 4 0 0 4 4 4 1 Cell division protein ZapB PAS_7 PF12860.7 gi|313117413|ref|YP_004044396.1| - 0.0088 16.2 0.2 0.13 12.5 0.0 2.8 2 0 0 2 2 2 1 PAS fold Retrotrans_gag PF03732.17 gi|313117413|ref|YP_004044396.1| - 0.0095 16.2 1.1 0.85 9.9 0.1 2.9 3 0 0 3 3 3 1 Retrotransposon gag protein HATPase_c_2 PF13581.6 gi|313117413|ref|YP_004044396.1| - 0.013 15.5 0.0 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CCB2_CCB4 PF11152.8 gi|313117413|ref|YP_004044396.1| - 0.016 14.5 0.0 0.055 12.8 0.0 1.9 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 SPOB_a PF14689.6 gi|313117413|ref|YP_004044396.1| - 0.055 13.2 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|313117413|ref|YP_004044396.1| - 0.062 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase PAS_4 PF08448.10 gi|313117414|ref|YP_004044397.1| - 8.2e-30 103.3 6.0 4.8e-14 52.5 0.2 4.0 3 1 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|313117414|ref|YP_004044397.1| - 7e-15 55.2 0.2 1.5e-14 54.1 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|313117414|ref|YP_004044397.1| - 2.6e-14 53.2 0.5 6.3e-06 26.2 0.0 3.7 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313117414|ref|YP_004044397.1| - 8.9e-12 45.2 0.0 1e-05 25.7 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|313117414|ref|YP_004044397.1| - 3.6e-11 42.8 0.2 0.0027 17.7 0.0 4.1 2 1 1 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|313117414|ref|YP_004044397.1| - 1.6e-10 41.4 0.8 3.8e-10 40.2 0.2 2.0 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|313117414|ref|YP_004044397.1| - 1.2e-07 32.1 0.0 4.1e-07 30.4 0.0 1.9 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|313117414|ref|YP_004044397.1| - 0.00014 22.1 0.3 0.001 19.3 0.3 2.4 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.7 gi|313117414|ref|YP_004044397.1| - 0.15 12.2 0.5 2.7 8.2 0.0 3.2 3 2 0 3 3 3 0 PAS fold Spore_YhcN_YlaJ PF09580.10 gi|313117414|ref|YP_004044397.1| - 0.23 11.5 3.6 0.22 11.6 1.3 2.0 2 0 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) ABC2_membrane_2 PF12679.7 gi|313117415|ref|YP_004044398.1| - 0.072 12.4 0.0 0.072 12.4 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein BAT PF15915.5 gi|313117416|ref|YP_004044399.1| - 9e-36 123.1 0.0 9e-36 123.1 0.0 2.9 3 1 1 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|313117416|ref|YP_004044399.1| - 9.6e-31 106.9 0.7 6.6e-20 71.8 0.0 2.8 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|313117416|ref|YP_004044399.1| - 8.8e-25 87.9 0.1 3.9e-13 50.2 0.1 3.0 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|313117416|ref|YP_004044399.1| - 3.1e-21 74.9 0.0 1.1e-20 73.1 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.10 gi|313117416|ref|YP_004044399.1| - 5e-21 75.0 1.3 1.1e-09 38.5 0.4 3.0 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|313117416|ref|YP_004044399.1| - 4.9e-20 71.6 0.1 9.6e-11 41.7 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|313117416|ref|YP_004044399.1| - 3.8e-19 68.9 0.0 1.1e-10 41.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 gi|313117416|ref|YP_004044399.1| - 1.1e-13 51.6 0.0 1.6e-05 25.3 0.0 2.5 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|313117416|ref|YP_004044399.1| - 1.1e-10 41.7 0.0 4.7e-08 33.2 0.0 2.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|313117416|ref|YP_004044399.1| - 2.9e-09 36.7 0.1 1.7e-05 24.7 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|313117416|ref|YP_004044399.1| - 6.8e-05 23.0 4.1 0.05 13.8 0.0 3.4 4 0 0 4 4 3 2 PAS fold Sigma70_r4 PF04545.16 gi|313117416|ref|YP_004044399.1| - 0.00027 20.4 0.8 0.014 14.9 0.0 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|313117416|ref|YP_004044399.1| - 0.00046 20.2 0.4 0.03 14.4 0.2 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|313117416|ref|YP_004044399.1| - 0.014 15.0 0.0 1.4 8.7 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|313117416|ref|YP_004044399.1| - 0.015 15.2 3.7 1.7 8.6 0.2 3.4 3 1 0 3 3 3 0 MarR family HTH_24 PF13412.6 gi|313117416|ref|YP_004044399.1| - 0.021 14.4 0.0 0.21 11.2 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|313117416|ref|YP_004044399.1| - 0.028 14.3 0.0 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|313117416|ref|YP_004044399.1| - 0.037 13.8 0.4 0.41 10.5 0.2 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|313117416|ref|YP_004044399.1| - 0.08 12.9 0.0 0.81 9.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_22 PF13309.6 gi|313117416|ref|YP_004044399.1| - 0.14 12.3 0.0 1.1 9.4 0.0 2.6 2 0 0 2 2 2 0 HTH domain HTH_Crp_2 PF13545.6 gi|313117416|ref|YP_004044399.1| - 1.2 9.2 4.7 4.3 7.4 0.1 3.2 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain CPSF100_C PF13299.6 gi|313117417|ref|YP_004044400.1| - 0.081 13.1 1.5 0.11 12.6 1.5 1.2 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal AAA_31 PF13614.6 gi|313117418|ref|YP_004044401.1| - 6.8e-20 71.7 0.0 9.9e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313117418|ref|YP_004044401.1| - 9e-10 38.7 0.0 9.5e-10 38.6 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|313117418|ref|YP_004044401.1| - 5.5e-07 29.1 0.0 8.7e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|313117418|ref|YP_004044401.1| - 4.3e-05 23.1 0.0 0.00012 21.6 0.0 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|313117418|ref|YP_004044401.1| - 0.00024 20.5 0.0 0.016 14.5 0.0 2.2 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|313117418|ref|YP_004044401.1| - 0.0035 16.8 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|313117418|ref|YP_004044401.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.4 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|313117418|ref|YP_004044401.1| - 0.019 14.6 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|313117418|ref|YP_004044401.1| - 0.21 11.3 0.0 0.42 10.4 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HD PF01966.22 gi|313117420|ref|YP_004044403.1| - 1e-10 41.9 0.8 1.7e-10 41.2 0.8 1.3 1 0 0 1 1 1 1 HD domain Tetraspanin PF00335.20 gi|313117421|ref|YP_004044404.1| - 4.3 7.0 7.6 4.9 6.8 7.6 1.1 1 0 0 1 1 1 0 Tetraspanin family NMT1_2 PF13379.6 gi|313117422|ref|YP_004044405.1| - 4.2e-21 75.8 0.0 5.1e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|313117422|ref|YP_004044405.1| - 0.00025 21.1 0.0 0.00048 20.1 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|313117422|ref|YP_004044405.1| - 0.00093 18.9 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.22 gi|313117423|ref|YP_004044406.1| - 4.4e-21 75.5 7.6 5.6e-21 75.1 7.6 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|313117424|ref|YP_004044407.1| - 6.3e-32 111.0 0.0 9.4e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313117424|ref|YP_004044407.1| - 8.3e-06 25.8 0.0 0.1 12.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|313117424|ref|YP_004044407.1| - 0.00063 20.2 0.0 0.0045 17.4 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|313117424|ref|YP_004044407.1| - 0.00066 20.1 0.4 0.00088 19.7 0.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313117424|ref|YP_004044407.1| - 0.0018 18.6 0.2 0.0035 17.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313117424|ref|YP_004044407.1| - 0.0022 17.9 0.1 0.0037 17.2 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|313117424|ref|YP_004044407.1| - 0.0059 16.8 0.0 0.011 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|313117424|ref|YP_004044407.1| - 0.017 15.4 0.4 0.53 10.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|313117424|ref|YP_004044407.1| - 0.022 14.5 0.2 0.25 11.1 0.1 2.0 1 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|313117424|ref|YP_004044407.1| - 0.043 14.0 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|313117424|ref|YP_004044407.1| - 0.05 13.2 0.1 0.44 10.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|313117424|ref|YP_004044407.1| - 0.055 13.2 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313117424|ref|YP_004044407.1| - 0.071 12.5 0.1 3.8 6.9 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|313117424|ref|YP_004044407.1| - 0.077 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|313117424|ref|YP_004044407.1| - 0.081 12.1 0.2 0.14 11.3 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|313117424|ref|YP_004044407.1| - 0.11 13.0 0.5 0.18 12.3 0.5 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|313117424|ref|YP_004044407.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AMP-binding PF00501.28 gi|313117425|ref|YP_004044408.1| - 4.3e-90 302.3 0.0 5.5e-90 302.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313117425|ref|YP_004044408.1| - 1.3e-20 74.2 0.7 2.8e-20 73.0 0.7 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Aconitase PF00330.20 gi|313117426|ref|YP_004044409.1| - 1e-170 568.7 0.0 1.4e-170 568.3 0.0 1.2 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|313117426|ref|YP_004044409.1| - 8.3e-42 142.6 0.0 1.4e-41 141.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain BAT PF15915.5 gi|313117426|ref|YP_004044409.1| - 0.0018 18.2 7.1 0.002 18.0 0.3 3.4 4 0 0 4 4 4 1 GAF and HTH_10 associated domain RACo_linker PF17650.1 gi|313117428|ref|YP_004044411.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 RACo linker region PAS_4 PF08448.10 gi|313117429|ref|YP_004044412.1| - 1.3e-38 131.6 8.6 2.3e-15 56.8 0.3 5.0 4 1 0 4 4 4 3 PAS fold PAS PF00989.25 gi|313117429|ref|YP_004044412.1| - 3.3e-35 120.5 2.9 1e-16 60.9 0.1 3.8 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|313117429|ref|YP_004044412.1| - 1.3e-27 96.0 0.3 1.3e-13 51.1 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|313117429|ref|YP_004044412.1| - 3.6e-24 85.6 2.1 6.4e-12 45.9 0.1 4.8 4 1 1 5 5 5 2 GAF domain PAS_8 PF13188.7 gi|313117429|ref|YP_004044412.1| - 2.2e-18 65.8 0.1 9.1e-07 28.8 0.0 4.0 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|313117429|ref|YP_004044412.1| - 1.5e-16 60.9 0.4 3.8e-16 59.6 0.4 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|313117429|ref|YP_004044412.1| - 1.1e-15 58.1 0.0 1.5e-07 31.8 0.0 4.3 4 1 1 5 5 5 2 GAF domain GAF PF01590.26 gi|313117429|ref|YP_004044412.1| - 2e-15 57.6 0.0 3.6e-07 30.9 0.0 3.9 3 0 0 3 3 3 2 GAF domain Response_reg PF00072.24 gi|313117429|ref|YP_004044412.1| - 8.2e-13 48.5 0.3 8.2e-13 48.5 0.3 3.0 3 0 0 3 3 3 1 Response regulator receiver domain HisKA PF00512.25 gi|313117429|ref|YP_004044412.1| - 4.2e-12 45.9 0.2 4.2e-12 45.9 0.2 3.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|313117429|ref|YP_004044412.1| - 1.1e-05 25.6 0.1 0.00073 19.8 0.0 2.8 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.15 gi|313117429|ref|YP_004044412.1| - 0.001 19.3 0.6 0.0049 17.1 0.5 2.3 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.7 gi|313117429|ref|YP_004044412.1| - 0.0077 16.4 1.3 0.5 10.5 0.0 4.2 5 1 0 5 5 5 1 PAS fold PAS_12 PF18095.1 gi|313117429|ref|YP_004044412.1| - 0.0092 15.6 0.0 0.059 13.0 0.0 2.3 3 0 0 3 3 3 1 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|313117429|ref|YP_004044412.1| - 0.025 14.4 0.0 0.066 13.0 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|313117429|ref|YP_004044412.1| - 0.1 13.2 0.0 0.81 10.3 0.0 2.7 3 0 0 3 3 1 0 PAS domain GIT1_C PF12205.8 gi|313117429|ref|YP_004044412.1| - 0.56 10.3 3.2 19 5.4 0.1 3.5 4 0 0 4 4 3 0 G protein-coupled receptor kinase-interacting protein 1 C term Na_H_antiporter PF03553.14 gi|313117430|ref|YP_004044413.1| - 2.3e-64 217.5 24.6 3.4e-64 217.0 5.6 2.3 1 1 1 2 2 2 2 Na+/H+ antiporter family SseC PF04888.12 gi|313117430|ref|YP_004044413.1| - 0.038 13.6 0.2 0.038 13.6 0.2 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF4516 PF14990.6 gi|313117430|ref|YP_004044413.1| - 0.49 10.2 3.0 1.7 8.4 0.1 3.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) TAT_signal PF10518.9 gi|313117431|ref|YP_004044414.1| - 0.012 15.4 0.1 0.015 15.1 0.1 1.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SDA1 PF05285.12 gi|313117431|ref|YP_004044414.1| - 0.12 11.7 4.2 0.12 11.8 4.2 1.0 1 0 0 1 1 1 0 SDA1 Nop14 PF04147.12 gi|313117431|ref|YP_004044414.1| - 0.16 10.2 5.1 0.16 10.2 5.1 1.0 1 0 0 1 1 1 0 Nop14-like family Trypan_PARP PF05887.11 gi|313117431|ref|YP_004044414.1| - 0.98 9.4 8.2 1.2 9.1 8.2 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DNA_pol_phi PF04931.13 gi|313117431|ref|YP_004044414.1| - 1.8 6.6 13.8 2 6.4 13.8 1.0 1 0 0 1 1 1 0 DNA polymerase phi DUF4637 PF15470.6 gi|313117431|ref|YP_004044414.1| - 5.9 6.6 9.2 7.2 6.3 9.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4637) DUF2457 PF10446.9 gi|313117431|ref|YP_004044414.1| - 6.1 5.9 12.5 6.8 5.7 12.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CDC45 PF02724.14 gi|313117431|ref|YP_004044414.1| - 9.2 4.4 6.9 10 4.3 6.9 1.0 1 0 0 1 1 1 0 CDC45-like protein adh_short_C2 PF13561.6 gi|313117432|ref|YP_004044415.1| - 1.7e-36 126.0 2.5 2.5e-36 125.4 2.5 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|313117432|ref|YP_004044415.1| - 6.1e-32 110.7 1.5 7.4e-32 110.4 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|313117432|ref|YP_004044415.1| - 0.00011 22.2 2.0 0.00024 21.1 2.0 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|313117432|ref|YP_004044415.1| - 0.0011 18.5 0.6 0.0015 18.0 0.2 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|313117432|ref|YP_004044415.1| - 0.003 17.0 0.2 0.004 16.6 0.2 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase MCR_alpha PF02249.17 gi|313117432|ref|YP_004044415.1| - 0.06 13.8 0.3 0.19 12.2 0.3 1.8 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain RmlD_sub_bind PF04321.17 gi|313117432|ref|YP_004044415.1| - 0.55 9.3 2.3 0.76 8.8 2.3 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain Patatin PF01734.22 gi|313117433|ref|YP_004044416.1| - 1.6e-15 57.9 2.5 3e-14 53.7 2.5 2.2 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.14 gi|313117434|ref|YP_004044417.1| - 1.8e-53 181.7 4.2 3.1e-53 180.9 4.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|313117434|ref|YP_004044417.1| - 1.5e-28 99.2 1.0 3.1e-28 98.2 1.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|313117434|ref|YP_004044417.1| - 2.6e-15 56.7 5.5 1.6e-14 54.2 0.2 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|313117434|ref|YP_004044417.1| - 2.9e-12 46.5 1.3 1.2e-11 44.4 1.3 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|313117434|ref|YP_004044417.1| - 5.4e-07 29.1 0.0 0.00032 20.0 0.0 2.4 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|313117434|ref|YP_004044417.1| - 3.5e-06 26.4 5.4 1.1e-05 24.7 4.2 2.3 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|313117434|ref|YP_004044417.1| - 5.1e-05 22.8 1.1 8.5e-05 22.1 0.2 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|313117434|ref|YP_004044417.1| - 0.065 11.9 0.8 11 4.6 0.3 3.1 3 0 0 3 3 3 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|313117434|ref|YP_004044417.1| - 0.12 11.4 8.8 0.35 9.9 8.8 2.2 1 1 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|313117434|ref|YP_004044417.1| - 0.15 11.9 1.3 14 5.6 0.1 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|313117434|ref|YP_004044417.1| - 1.6 9.0 5.0 13 6.1 0.2 3.2 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain MarR_2 PF12802.7 gi|313117435|ref|YP_004044418.1| - 3.9e-10 39.5 0.0 1.3e-09 37.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|313117435|ref|YP_004044418.1| - 2.1e-08 33.8 0.0 8.8e-08 31.8 0.0 2.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|313117435|ref|YP_004044418.1| - 7.8e-07 28.9 0.0 1.3e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|313117435|ref|YP_004044418.1| - 3.1e-06 27.1 0.0 6.4e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|313117435|ref|YP_004044418.1| - 5.1e-06 26.3 0.0 1.5e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|313117435|ref|YP_004044418.1| - 1.3e-05 24.7 0.0 2.6e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|313117435|ref|YP_004044418.1| - 5.5e-05 23.6 0.1 0.0013 19.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|313117435|ref|YP_004044418.1| - 0.00012 21.9 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain HTH_5 PF01022.20 gi|313117435|ref|YP_004044418.1| - 0.00014 21.7 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|313117435|ref|YP_004044418.1| - 0.00031 20.6 0.0 0.00059 19.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|313117435|ref|YP_004044418.1| - 0.0061 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|313117435|ref|YP_004044418.1| - 0.045 14.1 0.0 0.12 12.8 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313117435|ref|YP_004044418.1| - 0.062 13.5 0.0 0.28 11.4 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|313117435|ref|YP_004044418.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix AbiEi_4 PF13338.6 gi|313117435|ref|YP_004044418.1| - 0.1 12.8 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin Desulfoferrod_N PF06397.12 gi|313117435|ref|YP_004044418.1| - 0.12 12.1 0.1 0.2 11.3 0.1 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain TFIIE_alpha PF02002.17 gi|313117435|ref|YP_004044418.1| - 0.16 11.8 0.0 0.38 10.7 0.0 1.6 1 1 1 2 2 2 0 TFIIE alpha subunit GntR PF00392.21 gi|313117435|ref|YP_004044418.1| - 0.18 11.5 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TetR_C_6 PF13977.6 gi|313117436|ref|YP_004044419.1| - 1.8e-14 53.9 0.5 2.6e-14 53.4 0.5 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|313117436|ref|YP_004044419.1| - 1.3e-06 28.1 0.0 2.3e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 gi|313117436|ref|YP_004044419.1| - 6.6e-06 26.3 0.2 1.1e-05 25.5 0.2 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|313117436|ref|YP_004044419.1| - 0.00011 22.2 0.0 0.00028 20.9 0.0 1.7 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|313117436|ref|YP_004044419.1| - 0.00018 21.8 0.0 0.00031 21.0 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|313117436|ref|YP_004044419.1| - 0.00048 20.1 0.3 0.00088 19.3 0.3 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|313117436|ref|YP_004044419.1| - 0.023 15.0 0.5 0.032 14.5 0.5 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MatE PF01554.18 gi|313117437|ref|YP_004044420.1| - 4.5e-64 214.9 48.1 3e-36 124.5 12.8 3.0 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|313117437|ref|YP_004044420.1| - 2.7e-06 27.5 32.8 3.7e-05 23.8 16.4 5.6 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain TRAP-gamma PF07074.12 gi|313117437|ref|YP_004044420.1| - 0.1 12.1 0.1 0.1 12.1 0.1 2.8 3 0 0 3 3 3 0 Translocon-associated protein, gamma subunit (TRAP-gamma) MurJ PF03023.14 gi|313117437|ref|YP_004044420.1| - 1.1 7.8 37.3 5.1 5.6 35.6 3.1 1 1 0 1 1 1 0 Lipid II flippase MurJ NAD_binding_10 PF13460.6 gi|313117438|ref|YP_004044421.1| - 1.7e-13 50.8 0.0 6.1e-13 49.1 0.0 1.9 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|313117438|ref|YP_004044421.1| - 1.5e-12 47.6 0.0 2.1e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|313117438|ref|YP_004044421.1| - 0.00065 19.2 0.0 0.0034 16.9 0.0 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|313117438|ref|YP_004044421.1| - 0.0028 16.9 0.0 0.0048 16.1 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein HTH_23 PF13384.6 gi|313117438|ref|YP_004044421.1| - 0.024 14.4 0.0 0.058 13.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 gi|313117438|ref|YP_004044421.1| - 0.081 12.5 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RmlD_sub_bind PF04321.17 gi|313117438|ref|YP_004044421.1| - 0.083 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|313117438|ref|YP_004044421.1| - 0.11 11.5 0.0 0.26 10.3 0.0 1.6 1 1 1 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|313117438|ref|YP_004044421.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Usp PF00582.26 gi|313117439|ref|YP_004044422.1| - 7.8e-29 101.0 0.8 8.7e-29 100.8 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family ASCH PF04266.14 gi|313117440|ref|YP_004044423.1| - 0.016 15.8 0.1 0.026 15.1 0.1 1.3 1 0 0 1 1 1 0 ASCH domain Peptidase_S8 PF00082.22 gi|313117441|ref|YP_004044424.1| - 1.6e-48 165.5 8.8 1.6e-48 165.5 8.8 1.6 2 0 0 2 2 2 1 Subtilase family DUF4225 PF13988.6 gi|313117441|ref|YP_004044424.1| - 0.0057 16.2 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4225) Inhibitor_I9 PF05922.16 gi|313117441|ref|YP_004044424.1| - 0.0095 16.6 0.1 0.021 15.5 0.1 1.6 1 0 0 1 1 1 1 Peptidase inhibitor I9 CHRD PF07452.12 gi|313117441|ref|YP_004044424.1| - 0.024 15.6 0.3 0.088 13.8 0.3 2.0 1 0 0 1 1 1 0 CHRD domain fn3 PF00041.21 gi|313117441|ref|YP_004044424.1| - 0.082 13.3 0.0 0.25 11.7 0.0 1.9 1 0 0 1 1 1 0 Fibronectin type III domain YHS PF04945.13 gi|313117442|ref|YP_004044425.1| - 6.6e-06 26.1 0.7 1.4e-05 25.0 0.4 1.7 2 0 0 2 2 2 1 YHS domain DUF2116 PF09889.9 gi|313117442|ref|YP_004044425.1| - 0.0069 16.3 0.4 0.59 10.2 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FCS PF06467.14 gi|313117442|ref|YP_004044425.1| - 0.032 14.2 4.3 0.12 12.3 4.3 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif SR1P PF13790.6 gi|313117442|ref|YP_004044425.1| - 0.081 13.1 0.5 8.9 6.5 0.1 2.1 2 0 0 2 2 2 0 SR1 protein zf-FLZ PF04570.14 gi|313117442|ref|YP_004044425.1| - 0.16 11.5 6.4 0.52 9.8 6.4 1.9 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 BAT PF15915.5 gi|313117443|ref|YP_004044426.1| - 5.4e-41 140.1 1.8 5.4e-41 140.1 1.8 2.5 2 0 0 2 2 2 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|313117443|ref|YP_004044426.1| - 6.6e-33 113.9 0.5 2.4e-14 53.8 0.0 3.3 3 0 0 3 3 3 3 GAF domain HTH_10 PF04967.12 gi|313117443|ref|YP_004044426.1| - 3.6e-21 74.7 0.0 1.7e-20 72.6 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain Response_reg PF00072.24 gi|313117443|ref|YP_004044426.1| - 1.5e-12 47.7 0.4 5.4e-12 45.9 0.1 2.2 2 0 0 2 2 2 1 Response regulator receiver domain GAF_3 PF13492.6 gi|313117443|ref|YP_004044426.1| - 1e-09 38.8 0.0 0.0028 18.0 0.0 3.8 3 0 0 3 3 3 2 GAF domain GAF PF01590.26 gi|313117443|ref|YP_004044426.1| - 7.1e-09 36.4 0.4 0.0021 18.7 0.0 4.0 5 0 0 5 5 5 2 GAF domain Sigma70_r4 PF04545.16 gi|313117443|ref|YP_004044426.1| - 0.0095 15.4 0.5 0.037 13.6 0.2 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|313117443|ref|YP_004044426.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SatD PF16264.5 gi|313117443|ref|YP_004044426.1| - 0.012 15.2 0.0 0.058 13.0 0.0 2.0 2 0 0 2 2 2 0 SatD family (SatD) FleQ PF06490.11 gi|313117443|ref|YP_004044426.1| - 0.018 15.4 0.1 0.35 11.2 0.0 3.1 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ SH3_14 PF18343.1 gi|313117444|ref|YP_004044427.1| - 0.12 12.5 0.0 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 Dda helicase SH3 domain HTH_20 PF12840.7 gi|313117445|ref|YP_004044428.1| - 7.9e-12 45.1 0.1 1.7e-11 44.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313117445|ref|YP_004044428.1| - 3.3e-08 33.3 0.0 4.5e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|313117445|ref|YP_004044428.1| - 3.9e-08 33.1 0.0 5.9e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|313117445|ref|YP_004044428.1| - 2.3e-07 30.6 0.0 3.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313117445|ref|YP_004044428.1| - 7.9e-07 28.9 0.1 1.2e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|313117445|ref|YP_004044428.1| - 5.6e-05 23.2 0.0 8.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|313117445|ref|YP_004044428.1| - 0.0004 19.9 0.0 0.00058 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|313117445|ref|YP_004044428.1| - 0.00068 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|313117445|ref|YP_004044428.1| - 0.0011 18.9 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|313117445|ref|YP_004044428.1| - 0.0016 18.9 0.2 0.0027 18.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|313117445|ref|YP_004044428.1| - 0.0023 17.9 1.1 0.012 15.6 0.2 2.0 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|313117445|ref|YP_004044428.1| - 0.0038 17.0 0.0 0.0048 16.7 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|313117445|ref|YP_004044428.1| - 0.013 15.6 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|313117445|ref|YP_004044428.1| - 0.018 14.7 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain TFIIA_gamma_N PF02268.16 gi|313117445|ref|YP_004044428.1| - 0.026 14.6 0.3 0.13 12.3 0.2 2.1 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain HTH_micro PF17007.5 gi|313117445|ref|YP_004044428.1| - 0.042 12.7 0.0 0.042 12.7 0.0 1.0 1 0 0 1 1 1 0 HTH-like Lactamase_B_2 PF12706.7 gi|313117449|ref|YP_004044432.1| - 4.8e-06 26.2 0.1 8.6e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|313117449|ref|YP_004044432.1| - 0.00019 21.5 4.7 0.00035 20.6 4.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Amdase PF17645.1 gi|313117450|ref|YP_004044433.1| - 1.1e-37 129.8 0.0 1.4e-37 129.5 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|313117450|ref|YP_004044433.1| - 4.1e-13 49.7 0.0 5.1e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|313117450|ref|YP_004044433.1| - 0.069 12.5 0.0 1.9 7.9 0.1 2.8 1 1 1 2 2 2 0 AroM protein YnfE PF17452.2 gi|313117450|ref|YP_004044433.1| - 0.099 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized YnfE-like Hydantoinase_B PF02538.14 gi|313117451|ref|YP_004044434.1| - 2.2e-208 692.9 6.3 2.5e-208 692.7 6.3 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|313117452|ref|YP_004044435.1| - 2.7e-99 332.1 12.4 7.2e-98 327.4 8.2 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|313117452|ref|YP_004044435.1| - 2.6e-52 177.1 3.0 1.3e-51 174.8 0.7 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|313117452|ref|YP_004044435.1| - 6.7e-05 21.7 3.9 0.0096 14.6 0.9 2.5 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.20 gi|313117452|ref|YP_004044435.1| - 0.0076 15.8 3.7 0.12 11.8 3.6 2.9 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Nramp PF01566.18 gi|313117453|ref|YP_004044436.1| - 5.8e-95 318.3 25.9 7.8e-95 317.9 25.9 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Ceramidase PF05875.12 gi|313117453|ref|YP_004044436.1| - 0.11 11.9 2.7 0.13 11.7 0.3 2.1 2 1 0 2 2 2 0 Ceramidase RHH_1 PF01402.21 gi|313117454|ref|YP_004044437.1| - 6.2e-06 26.0 0.1 1.4e-05 24.9 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|313117454|ref|YP_004044437.1| - 0.0002 21.2 0.0 0.00045 20.1 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain HTH_20 PF12840.7 gi|313117455|ref|YP_004044438.1| - 1.5e-05 24.9 0.0 5.3e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain zf-C2H2_jaz PF12171.8 gi|313117456|ref|YP_004044439.1| - 0.0032 17.7 0.1 0.0057 16.9 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 gi|313117456|ref|YP_004044439.1| - 0.019 15.3 0.2 0.038 14.4 0.2 1.5 1 0 0 1 1 1 0 Zinc-finger of C2H2 type DUF4764 PF15961.5 gi|313117456|ref|YP_004044439.1| - 0.022 13.5 0.0 0.027 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4764) zf-C2H2_4 PF13894.6 gi|313117456|ref|YP_004044439.1| - 0.04 14.8 1.5 0.067 14.1 0.5 1.8 2 0 0 2 2 2 0 C2H2-type zinc finger DUF4747 PF15931.5 gi|313117456|ref|YP_004044439.1| - 0.18 11.5 0.0 0.34 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4747) FAD_binding_4 PF01565.23 gi|313117457|ref|YP_004044440.1| - 1.5e-34 118.8 2.6 2.3e-34 118.1 2.6 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|313117457|ref|YP_004044440.1| - 1.2e-15 57.3 1.0 3.5e-15 55.8 1.0 1.8 1 0 0 1 1 1 1 Berberine and berberine like Gas_vesicle PF00741.18 gi|313117458|ref|YP_004044441.1| - 2e-12 47.0 6.3 2.4e-12 46.8 6.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein O_anti_polymase PF01901.16 gi|313117458|ref|YP_004044441.1| - 0.084 12.1 0.0 0.097 11.9 0.0 1.0 1 0 0 1 1 1 0 Putative O-antigen polymerase GvpL_GvpF PF06386.11 gi|313117459|ref|YP_004044442.1| - 2.6e-72 243.7 0.1 3e-72 243.5 0.1 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.12 gi|313117460|ref|YP_004044443.1| - 3.6e-26 91.0 7.3 4.4e-26 90.7 7.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein K Csm1_N PF18504.1 gi|313117460|ref|YP_004044443.1| - 0.0052 17.1 4.2 0.0076 16.6 4.0 1.4 1 1 0 1 1 1 1 Csm1 N-terminal domain Ribosomal_S13 PF00416.22 gi|313117460|ref|YP_004044443.1| - 0.018 15.4 0.3 0.022 15.1 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein S13/S18 LTV PF04180.14 gi|313117460|ref|YP_004044443.1| - 0.019 14.7 0.5 0.023 14.5 0.5 1.1 1 0 0 1 1 1 0 Low temperature viability protein FlxA PF14282.6 gi|313117460|ref|YP_004044443.1| - 0.022 14.7 1.5 0.031 14.3 1.5 1.3 1 1 0 1 1 1 0 FlxA-like protein Not3 PF04065.15 gi|313117460|ref|YP_004044443.1| - 0.037 13.5 0.2 0.042 13.3 0.2 1.1 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component End3 PF12761.7 gi|313117460|ref|YP_004044443.1| - 0.037 14.2 0.6 0.042 14.0 0.6 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF2730 PF10805.8 gi|313117460|ref|YP_004044443.1| - 0.046 13.8 0.1 0.06 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Val_tRNA-synt_C PF10458.9 gi|313117460|ref|YP_004044443.1| - 0.058 13.7 1.4 0.16 12.3 1.4 1.7 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm DivIC PF04977.15 gi|313117460|ref|YP_004044443.1| - 0.067 13.0 1.2 0.13 12.0 1.2 1.4 1 0 0 1 1 1 0 Septum formation initiator MbeD_MobD PF04899.12 gi|313117460|ref|YP_004044443.1| - 0.099 12.8 1.8 0.16 12.1 0.8 1.9 2 1 0 2 2 2 0 MbeD/MobD like PARP_reg PF02877.14 gi|313117460|ref|YP_004044443.1| - 0.1 12.7 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain HHA PF05321.11 gi|313117460|ref|YP_004044443.1| - 0.16 12.3 0.4 0.31 11.4 0.1 1.7 1 1 0 1 1 1 0 Haemolysin expression modulating protein LPP PF04728.13 gi|313117460|ref|YP_004044443.1| - 0.37 11.2 2.2 0.63 10.5 0.8 2.2 2 1 0 2 2 2 0 Lipoprotein leucine-zipper SlyX PF04102.12 gi|313117460|ref|YP_004044443.1| - 1.9 9.2 6.3 3.2 8.4 4.9 2.0 1 1 0 2 2 2 0 SlyX DUF1192 PF06698.11 gi|313117460|ref|YP_004044443.1| - 4.1 7.5 7.9 1.7 8.8 3.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Gas_vesicle PF00741.18 gi|313117461|ref|YP_004044444.1| - 1.1e-15 57.4 3.0 1.4e-15 57.1 3.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein SASP_gamma PF04259.14 gi|313117461|ref|YP_004044444.1| - 0.015 15.8 1.7 0.037 14.5 1.8 1.6 1 1 0 1 1 1 0 Small, acid-soluble spore protein, gamma-type DUF4407 PF14362.6 gi|313117462|ref|YP_004044445.1| - 4.8 6.4 7.4 4.7 6.5 7.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) GvpH PF05455.11 gi|313117463|ref|YP_004044446.1| - 5.1e-48 163.5 11.0 6.1e-48 163.2 11.0 1.0 1 0 0 1 1 1 1 GvpH Mod_r PF07200.13 gi|313117464|ref|YP_004044447.1| - 0.0037 17.4 1.9 0.0042 17.2 1.9 1.0 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein GvpG PF05120.12 gi|313117464|ref|YP_004044447.1| - 0.0051 16.8 1.8 0.006 16.6 1.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Orthopox_A49R PF06489.11 gi|313117464|ref|YP_004044447.1| - 0.0081 16.4 0.0 0.0093 16.2 0.0 1.1 1 0 0 1 1 1 1 Orthopoxvirus A49R protein THOC7 PF05615.13 gi|313117464|ref|YP_004044447.1| - 0.027 14.8 3.4 0.031 14.6 3.4 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 SHOCT PF09851.9 gi|313117464|ref|YP_004044447.1| - 0.073 12.8 4.2 0.13 12.0 2.1 2.3 2 0 0 2 2 2 0 Short C-terminal domain GvpL_GvpF PF06386.11 gi|313117465|ref|YP_004044448.1| - 3.2e-41 141.9 0.7 7.9e-22 78.4 0.1 2.0 2 0 0 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF PadR PF03551.14 gi|313117466|ref|YP_004044449.1| - 3.5e-09 36.5 0.0 8.3e-09 35.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_40 PF14493.6 gi|313117466|ref|YP_004044449.1| - 0.01 16.3 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|313117466|ref|YP_004044449.1| - 0.014 15.5 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.20 gi|313117466|ref|YP_004044449.1| - 0.024 14.5 0.0 0.1 12.5 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_33 PF13592.6 gi|313117466|ref|YP_004044449.1| - 0.11 12.1 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix GvpD PF07088.11 gi|313117467|ref|YP_004044450.1| - 5.5e-233 773.9 0.0 7.7e-233 773.4 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein ATPase PF06745.13 gi|313117467|ref|YP_004044450.1| - 4e-12 46.0 0.0 8.7e-09 35.1 0.0 2.4 2 0 0 2 2 2 2 KaiC AAA_16 PF13191.6 gi|313117467|ref|YP_004044450.1| - 0.014 15.7 0.0 0.033 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|313117467|ref|YP_004044450.1| - 0.036 13.7 0.1 0.14 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|313117467|ref|YP_004044450.1| - 0.062 13.5 0.0 0.19 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|313117467|ref|YP_004044450.1| - 0.19 10.8 0.1 0.33 10.0 0.1 1.3 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.9 gi|313117467|ref|YP_004044450.1| - 0.2 10.8 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Gas_vesicle PF00741.18 gi|313117468|ref|YP_004044451.1| - 1.5e-14 53.8 5.7 2e-14 53.4 5.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein Halo_GVPC PF05465.13 gi|313117469|ref|YP_004044452.1| - 5.6e-68 224.5 81.6 2.5e-12 46.7 3.8 7.3 6 1 1 7 7 7 7 Halobacterial gas vesicle protein C (GVPC) repeat GAS PF13851.6 gi|313117469|ref|YP_004044452.1| - 5.3e-07 29.2 4.0 0.0012 18.2 0.1 3.8 1 1 3 4 4 4 2 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|313117469|ref|YP_004044452.1| - 6.1e-07 29.6 10.7 0.0028 17.7 0.3 3.3 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein AAA_13 PF13166.6 gi|313117469|ref|YP_004044452.1| - 5.1e-06 25.4 7.5 5.1e-06 25.4 7.5 1.5 1 1 1 2 2 2 2 AAA domain CorA PF01544.18 gi|313117469|ref|YP_004044452.1| - 1.6e-05 24.4 10.7 3.2e-05 23.4 4.0 2.2 1 1 0 2 2 2 1 CorA-like Mg2+ transporter protein APG17 PF04108.12 gi|313117469|ref|YP_004044452.1| - 3e-05 23.3 8.5 1.6 7.7 0.1 3.6 1 1 1 2 2 2 1 Autophagy protein Apg17 DUF16 PF01519.16 gi|313117469|ref|YP_004044452.1| - 5.2e-05 23.7 2.3 0.11 13.0 0.1 3.1 2 1 1 3 3 3 1 Protein of unknown function DUF16 Vps5 PF09325.10 gi|313117469|ref|YP_004044452.1| - 8.8e-05 22.2 8.5 0.0019 17.8 3.0 2.2 1 1 1 2 2 2 2 Vps5 C terminal like DUF1664 PF07889.12 gi|313117469|ref|YP_004044452.1| - 9.5e-05 22.4 1.7 0.084 12.9 0.2 3.2 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) ZapB PF06005.12 gi|313117469|ref|YP_004044452.1| - 0.00013 22.3 4.3 0.2 12.1 0.1 4.4 5 0 0 5 5 4 1 Cell division protein ZapB Bacillus_HBL PF05791.11 gi|313117469|ref|YP_004044452.1| - 0.00014 21.7 4.0 0.4 10.5 0.1 3.4 1 1 2 3 3 3 2 Bacillus haemolytic enterotoxin (HBL) Tup_N PF08581.10 gi|313117469|ref|YP_004044452.1| - 0.00014 22.0 8.8 0.0036 17.6 0.3 3.8 1 1 3 4 4 4 1 Tup N-terminal AIP3 PF03915.13 gi|313117469|ref|YP_004044452.1| - 0.00028 20.1 1.4 0.00038 19.7 1.1 1.4 1 1 0 1 1 1 1 Actin interacting protein 3 OmpH PF03938.14 gi|313117469|ref|YP_004044452.1| - 0.00067 20.0 15.2 0.1 13.0 0.6 3.3 1 1 2 3 3 3 2 Outer membrane protein (OmpH-like) LOH1CR12 PF10158.9 gi|313117469|ref|YP_004044452.1| - 0.00092 19.2 3.4 4.2 7.4 0.2 3.7 1 1 3 4 4 4 0 Tumour suppressor protein Filament PF00038.21 gi|313117469|ref|YP_004044452.1| - 0.00098 18.8 12.4 0.0022 17.6 12.4 1.7 1 1 0 1 1 1 1 Intermediate filament protein HsbA PF12296.8 gi|313117469|ref|YP_004044452.1| - 0.00098 19.5 0.3 1.7 9.1 0.2 3.0 1 1 1 2 2 2 1 Hydrophobic surface binding protein A Seryl_tRNA_N PF02403.22 gi|313117469|ref|YP_004044452.1| - 0.001 19.3 5.3 1.3 9.3 0.1 3.8 1 1 3 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.11 gi|313117469|ref|YP_004044452.1| - 0.0012 17.8 6.9 0.066 12.1 1.1 2.8 1 1 2 3 3 3 2 Spc7 kinetochore protein SHE3 PF17078.5 gi|313117469|ref|YP_004044452.1| - 0.002 17.9 2.2 0.04 13.6 1.4 2.3 1 1 1 2 2 2 1 SWI5-dependent HO expression protein 3 Fib_alpha PF08702.10 gi|313117469|ref|YP_004044452.1| - 0.0027 17.9 0.3 0.24 11.6 0.1 2.9 1 1 2 3 3 2 1 Fibrinogen alpha/beta chain family HalX PF08663.10 gi|313117469|ref|YP_004044452.1| - 0.0031 17.8 36.6 0.032 14.6 1.9 6.2 2 1 4 6 6 6 2 HalX domain TACC_C PF05010.14 gi|313117469|ref|YP_004044452.1| - 0.0053 16.6 10.0 0.057 13.2 0.8 2.9 1 1 0 2 2 2 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal YgaB PF14182.6 gi|313117469|ref|YP_004044452.1| - 0.0053 17.1 6.0 0.33 11.4 0.1 4.5 2 2 2 5 5 4 1 YgaB-like protein Lectin_N PF03954.14 gi|313117469|ref|YP_004044452.1| - 0.0059 16.4 0.9 3.9 7.2 0.3 3.8 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain ApoLp-III PF07464.11 gi|313117469|ref|YP_004044452.1| - 0.0073 16.4 3.1 2 8.5 0.3 3.2 1 1 2 3 3 3 1 Apolipophorin-III precursor (apoLp-III) Med9 PF07544.13 gi|313117469|ref|YP_004044452.1| - 0.0086 16.1 0.3 0.94 9.6 0.0 3.7 3 2 1 4 4 3 1 RNA polymerase II transcription mediator complex subunit 9 DUF4407 PF14362.6 gi|313117469|ref|YP_004044452.1| - 0.0093 15.4 13.7 0.38 10.1 9.6 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4407) FAM184 PF15665.5 gi|313117469|ref|YP_004044452.1| - 0.0096 15.7 20.2 0.15 11.8 13.3 2.9 1 1 2 3 3 3 1 Family with sequence similarity 184, A and B Baculo_PEP_C PF04513.12 gi|313117469|ref|YP_004044452.1| - 0.011 15.8 1.7 7.3 6.6 0.0 3.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Golgin_A5 PF09787.9 gi|313117469|ref|YP_004044452.1| - 0.019 14.5 6.5 1.2 8.6 0.7 2.4 1 1 1 2 2 2 0 Golgin subfamily A member 5 CagZ PF09053.10 gi|313117469|ref|YP_004044452.1| - 0.023 14.3 3.0 0.05 13.2 1.7 2.0 1 1 0 2 2 2 0 CagZ NYD-SP28 PF14772.6 gi|313117469|ref|YP_004044452.1| - 0.025 14.6 5.6 15 5.7 0.4 3.9 1 1 2 4 4 4 0 Sperm tail Fez1 PF06818.15 gi|313117469|ref|YP_004044452.1| - 0.025 15.0 6.4 0.32 11.4 2.5 2.3 1 1 1 2 2 2 0 Fez1 CALCOCO1 PF07888.11 gi|313117469|ref|YP_004044452.1| - 0.038 12.9 4.6 0.17 10.7 1.1 2.3 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like HIP1_clath_bdg PF16515.5 gi|313117469|ref|YP_004044452.1| - 0.039 14.6 6.8 7.4 7.3 0.5 4.0 1 1 4 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 She9_MDM33 PF05546.11 gi|313117469|ref|YP_004044452.1| - 0.05 13.4 3.5 2.2 8.0 0.1 3.5 1 1 2 3 3 3 0 She9 / Mdm33 family HAP1_N PF04849.13 gi|313117469|ref|YP_004044452.1| - 0.05 12.8 5.5 0.12 11.6 0.7 2.3 1 1 1 2 2 2 0 HAP1 N-terminal conserved region DUF724 PF05266.14 gi|313117469|ref|YP_004044452.1| - 0.053 13.4 7.4 1.7 8.4 0.6 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF724) DUF848 PF05852.11 gi|313117469|ref|YP_004044452.1| - 0.064 13.4 13.9 1.4 9.1 0.7 3.7 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) CREPT PF16566.5 gi|313117469|ref|YP_004044452.1| - 0.064 13.4 5.3 0.72 10.0 0.7 3.0 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour ECM11 PF15463.6 gi|313117469|ref|YP_004044452.1| - 0.08 13.5 0.5 0.08 13.5 0.5 3.3 2 2 2 4 4 3 0 Extracellular mutant protein 11 APG6_N PF17675.1 gi|313117469|ref|YP_004044452.1| - 0.081 13.4 16.3 0.51 10.9 3.3 3.1 1 1 2 3 3 3 0 Apg6 coiled-coil region PIN_8 PF18476.1 gi|313117469|ref|YP_004044452.1| - 0.092 12.6 7.6 0.4 10.5 2.5 2.3 1 1 1 2 2 2 0 PIN like domain Tmemb_cc2 PF10267.9 gi|313117469|ref|YP_004044452.1| - 0.099 11.8 7.0 5.3 6.1 0.4 3.1 1 1 2 3 3 3 0 Predicted transmembrane and coiled-coil 2 protein CHD5 PF04420.14 gi|313117469|ref|YP_004044452.1| - 0.11 12.3 0.4 2.4 8.0 0.0 2.8 1 1 3 4 4 4 0 CHD5-like protein DUF4200 PF13863.6 gi|313117469|ref|YP_004044452.1| - 0.12 12.8 14.5 0.19 12.2 1.1 4.0 1 1 2 4 4 4 0 Domain of unknown function (DUF4200) DUF3452 PF11934.8 gi|313117469|ref|YP_004044452.1| - 0.12 11.9 1.4 12 5.5 0.1 3.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3452) EHN PF06441.12 gi|313117469|ref|YP_004044452.1| - 0.13 12.7 0.1 2 8.8 0.1 2.6 1 1 0 1 1 1 0 Epoxide hydrolase N terminus GldM_N PF12081.8 gi|313117469|ref|YP_004044452.1| - 0.13 12.3 8.5 2.8 8.0 3.3 2.9 1 1 1 2 2 2 0 GldM N-terminal domain DUF3450 PF11932.8 gi|313117469|ref|YP_004044452.1| - 0.16 11.2 7.6 1.2 8.4 2.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DASH_Spc34 PF08657.10 gi|313117469|ref|YP_004044452.1| - 0.16 11.7 6.8 1.3 8.8 0.8 3.0 1 1 1 2 2 2 0 DASH complex subunit Spc34 DUF2384 PF09722.10 gi|313117469|ref|YP_004044452.1| - 0.17 12.0 1.2 9.5 6.4 0.0 3.4 4 0 0 4 4 3 0 Protein of unknown function (DUF2384) UPF0242 PF06785.11 gi|313117469|ref|YP_004044452.1| - 0.19 11.8 8.2 3.2 7.8 1.2 2.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Octopine_DH PF02317.17 gi|313117469|ref|YP_004044452.1| - 0.21 11.7 4.4 0.65 10.1 0.7 2.3 1 1 1 2 2 2 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Spectrin PF00435.21 gi|313117469|ref|YP_004044452.1| - 0.23 12.0 10.4 4.2 7.9 0.9 4.3 1 1 3 4 4 4 0 Spectrin repeat CENP-F_leu_zip PF10473.9 gi|313117469|ref|YP_004044452.1| - 0.26 11.3 5.4 3.3 7.7 1.6 3.3 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 T4SS PF07996.11 gi|313117469|ref|YP_004044452.1| - 0.28 11.6 6.6 9.4 6.6 1.6 2.9 1 1 1 2 2 2 0 Type IV secretion system proteins DUF2203 PF09969.9 gi|313117469|ref|YP_004044452.1| - 0.28 11.9 10.8 3.8 8.2 0.5 3.2 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF2605 PF10792.9 gi|313117469|ref|YP_004044452.1| - 0.44 10.5 3.5 5.1 7.1 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2605) WXG100 PF06013.12 gi|313117469|ref|YP_004044452.1| - 0.48 10.7 18.1 1.4 9.2 1.3 4.5 1 1 5 6 6 6 0 Proteins of 100 residues with WXG ATG16 PF08614.11 gi|313117469|ref|YP_004044452.1| - 0.57 10.4 11.7 7.9 6.7 4.4 3.2 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Cnn_1N PF07989.11 gi|313117469|ref|YP_004044452.1| - 0.61 10.3 3.9 7.3 6.8 0.1 3.7 1 1 4 5 5 4 0 Centrosomin N-terminal motif 1 AAA_25 PF13481.6 gi|313117469|ref|YP_004044452.1| - 0.64 9.6 3.8 17 4.9 0.2 2.7 2 0 0 2 2 2 0 AAA domain DUF2508 PF10704.9 gi|313117469|ref|YP_004044452.1| - 0.67 10.2 16.5 6.9 6.9 0.1 5.4 2 1 3 6 6 5 0 Protein of unknown function (DUF2508) DMPK_coil PF08826.10 gi|313117469|ref|YP_004044452.1| - 0.72 10.0 6.0 17 5.6 0.2 3.8 4 1 0 4 4 3 0 DMPK coiled coil domain like Goodbye PF17109.5 gi|313117469|ref|YP_004044452.1| - 0.82 10.1 5.5 48 4.4 0.4 4.0 1 1 4 5 5 5 0 fungal STAND N-terminal Goodbye domain Rab5-bind PF09311.11 gi|313117469|ref|YP_004044452.1| - 0.88 8.9 6.3 1.2 8.5 2.4 2.2 1 1 1 2 2 2 0 Rabaptin-like protein MSA-2c PF12238.8 gi|313117469|ref|YP_004044452.1| - 0.93 9.5 12.3 3.3 7.7 1.0 3.0 1 1 2 3 3 3 0 Merozoite surface antigen 2c HAUS5 PF14817.6 gi|313117469|ref|YP_004044452.1| - 1.1 8.0 5.1 4.1 6.1 2.1 2.4 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 5 Phasin PF05597.11 gi|313117469|ref|YP_004044452.1| - 1.3 9.0 8.8 7.6 6.6 0.1 3.6 1 1 3 4 4 4 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DHR10 PF18595.1 gi|313117469|ref|YP_004044452.1| - 1.3 9.1 12.1 0.79 9.8 0.6 3.8 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain MAD PF05557.13 gi|313117469|ref|YP_004044452.1| - 1.3 7.3 7.1 0.16 10.3 0.3 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF4715 PF15835.5 gi|313117469|ref|YP_004044452.1| - 1.6 8.8 6.9 5.1 7.2 0.5 3.2 1 1 1 3 3 3 0 Domain of unknown function (DUF4715) FUSC PF04632.12 gi|313117469|ref|YP_004044452.1| - 1.8 7.0 12.3 32 2.9 12.2 2.1 1 1 0 1 1 1 0 Fusaric acid resistance protein family TMF_TATA_bd PF12325.8 gi|313117469|ref|YP_004044452.1| - 2.4 8.4 8.9 6.1 7.1 1.2 3.4 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding MIP-T3_C PF17749.1 gi|313117469|ref|YP_004044452.1| - 2.4 8.1 6.5 39 4.2 0.7 3.1 1 1 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region LPP PF04728.13 gi|313117469|ref|YP_004044452.1| - 3.2 8.2 15.3 2.4 8.6 0.1 5.2 5 2 1 6 6 4 0 Lipoprotein leucine-zipper CCP_MauG PF03150.14 gi|313117469|ref|YP_004044452.1| - 3.6 8.2 13.9 8.1 7.1 1.0 3.3 1 1 2 3 3 3 0 Di-haem cytochrome c peroxidase Rotamase PF00639.21 gi|313117469|ref|YP_004044452.1| - 3.6 8.6 16.4 15 6.6 0.2 4.2 1 1 2 4 4 4 0 PPIC-type PPIASE domain TraF_2 PF13729.6 gi|313117469|ref|YP_004044452.1| - 7.4 5.9 14.8 1.2 8.4 0.5 3.1 1 1 2 3 3 3 0 F plasmid transfer operon, TraF, protein ROS_MUCR PF05443.11 gi|313117470|ref|YP_004044453.1| - 7e-08 32.6 0.0 8.2e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein Cas_Csd1 PF09709.10 gi|313117470|ref|YP_004044453.1| - 0.15 10.7 0.1 0.16 10.6 0.1 1.0 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csd1) AAA_5 PF07728.14 gi|313117471|ref|YP_004044454.1| - 1.7e-18 66.9 0.0 4.7e-17 62.3 0.0 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|313117471|ref|YP_004044454.1| - 1e-05 26.0 0.0 7e-05 23.3 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|313117471|ref|YP_004044454.1| - 2e-05 25.0 0.0 5.8e-05 23.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|313117471|ref|YP_004044454.1| - 5.3e-05 23.1 0.0 0.0095 15.8 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|313117471|ref|YP_004044454.1| - 0.00011 21.8 0.0 0.0002 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|313117471|ref|YP_004044454.1| - 0.00013 21.8 0.0 0.00033 20.4 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|313117471|ref|YP_004044454.1| - 0.0017 17.9 0.0 0.0075 15.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|313117471|ref|YP_004044454.1| - 0.0059 16.3 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|313117471|ref|YP_004044454.1| - 0.006 16.5 0.0 0.02 14.8 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|313117471|ref|YP_004044454.1| - 0.0094 16.5 0.1 0.019 15.5 0.0 1.8 2 1 0 2 2 1 1 ABC transporter AAA_33 PF13671.6 gi|313117471|ref|YP_004044454.1| - 0.013 15.7 2.6 0.046 13.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|313117471|ref|YP_004044454.1| - 0.018 15.0 0.0 0.055 13.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain TIP49 PF06068.13 gi|313117471|ref|YP_004044454.1| - 0.019 14.2 0.0 0.042 13.0 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain IPT PF01745.16 gi|313117471|ref|YP_004044454.1| - 0.02 14.3 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.16 gi|313117471|ref|YP_004044454.1| - 0.022 14.2 0.0 0.11 11.9 0.0 2.1 3 0 0 3 3 3 0 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|313117471|ref|YP_004044454.1| - 0.024 14.7 0.0 0.088 12.9 0.0 2.0 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|313117471|ref|YP_004044454.1| - 0.029 14.6 0.0 0.099 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|313117471|ref|YP_004044454.1| - 0.038 13.7 0.0 0.28 10.9 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NB-ARC PF00931.22 gi|313117471|ref|YP_004044454.1| - 0.07 12.3 0.1 0.33 10.1 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DUF2201_N PF13203.6 gi|313117471|ref|YP_004044454.1| - 0.094 12.3 1.0 0.16 11.5 1.0 1.3 1 0 0 1 1 1 0 Putative metallopeptidase domain AAA_14 PF13173.6 gi|313117471|ref|YP_004044454.1| - 0.1 12.6 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF4192 PF13830.6 gi|313117471|ref|YP_004044454.1| - 1.2 9.1 4.9 0.84 9.6 2.7 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) GvpO PF05800.11 gi|313117472|ref|YP_004044455.1| - 8.5e-34 115.4 0.3 1.3e-33 114.8 0.3 1.2 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO PGA2 PF07543.12 gi|313117472|ref|YP_004044455.1| - 0.055 13.5 0.3 0.079 12.9 0.3 1.3 1 0 0 1 1 1 0 Protein trafficking PGA2 FTHFS PF01268.19 gi|313117473|ref|YP_004044456.1| - 3.7e-242 804.5 0.0 4.2e-242 804.3 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase HATPase_c PF02518.26 gi|313117474|ref|YP_004044457.1| - 2e-17 63.7 0.0 1.4e-16 61.0 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|313117474|ref|YP_004044457.1| - 2.7e-07 30.4 0.0 4.2e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|313117474|ref|YP_004044457.1| - 1.6e-06 28.1 0.1 4.1e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|313117474|ref|YP_004044457.1| - 2e-06 27.5 0.1 3.6e-06 26.7 0.1 1.5 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|313117474|ref|YP_004044457.1| - 2.9e-05 24.0 0.4 7.5e-05 22.7 0.4 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|313117474|ref|YP_004044457.1| - 0.025 14.3 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_3 PF08447.12 gi|313117475|ref|YP_004044458.1| - 6.5e-48 161.0 0.1 1.1e-18 67.3 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|313117475|ref|YP_004044458.1| - 2e-41 140.7 1.1 2.4e-16 59.9 0.1 3.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|313117475|ref|YP_004044458.1| - 8e-38 128.9 0.3 1.1e-14 54.3 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|313117475|ref|YP_004044458.1| - 1.7e-31 108.5 0.1 5.4e-12 45.9 0.0 3.3 3 0 0 3 3 3 3 PAS domain Response_reg PF00072.24 gi|313117475|ref|YP_004044458.1| - 1.1e-20 73.9 0.0 2.7e-20 72.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|313117475|ref|YP_004044458.1| - 3.6e-16 58.8 0.7 0.00011 22.1 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_11 PF14598.6 gi|313117475|ref|YP_004044458.1| - 2.2e-06 27.8 0.0 0.0002 21.5 0.0 3.0 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.7 gi|313117475|ref|YP_004044458.1| - 0.0009 19.4 4.2 3 8.0 0.0 4.6 3 2 1 4 4 4 2 PAS fold PAS_12 PF18095.1 gi|313117475|ref|YP_004044458.1| - 0.0027 17.4 0.0 0.22 11.1 0.1 2.2 2 0 0 2 2 2 1 UPF0242 C-terminal PAS-like domain OKR_DC_1_N PF03709.15 gi|313117475|ref|YP_004044458.1| - 0.009 16.3 0.0 0.026 14.8 0.0 1.8 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Glyco_tranf_2_4 PF13704.6 gi|313117475|ref|YP_004044458.1| - 0.046 14.2 0.1 0.5 10.9 0.1 2.5 2 0 0 2 2 2 0 Glycosyl transferase family 2 Molybdopterin PF00384.22 gi|313117476|ref|YP_004044459.1| - 5.9e-85 285.8 0.0 7.3e-85 285.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|313117476|ref|YP_004044459.1| - 1.9e-31 108.3 0.0 3.8e-31 107.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|313117476|ref|YP_004044459.1| - 1.2e-26 92.6 0.8 2.6e-26 91.5 0.8 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|313117476|ref|YP_004044459.1| - 2.8e-12 46.0 1.1 9.9e-12 44.2 1.1 2.1 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.7 gi|313117476|ref|YP_004044459.1| - 4.4e-10 40.0 8.0 3.9e-07 30.5 8.7 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Molybdop_Fe4S4 PF04879.16 gi|313117476|ref|YP_004044459.1| - 1.7e-09 37.5 0.0 6e-09 35.8 0.0 2.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 gi|313117476|ref|YP_004044459.1| - 2.4e-09 37.2 9.0 2.4e-09 37.2 9.0 2.8 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313117476|ref|YP_004044459.1| - 3.6e-07 30.0 20.7 4.8e-05 23.2 2.7 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|313117476|ref|YP_004044459.1| - 6.4e-07 28.9 23.0 0.00027 20.6 2.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|313117476|ref|YP_004044459.1| - 3.4e-06 27.1 8.1 3.4e-06 27.1 8.1 3.7 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|313117476|ref|YP_004044459.1| - 3.2e-05 24.3 7.3 3.2e-05 24.3 7.3 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|313117476|ref|YP_004044459.1| - 0.00038 20.5 13.5 0.00038 20.5 13.5 3.4 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313117476|ref|YP_004044459.1| - 0.005 17.7 2.4 0.005 17.7 2.4 3.4 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain CDC48_N PF02359.18 gi|313117476|ref|YP_004044459.1| - 0.0088 16.2 0.0 0.021 15.0 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Fer4_22 PF17179.4 gi|313117476|ref|YP_004044459.1| - 0.012 16.5 11.2 0.63 10.9 2.1 3.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|313117476|ref|YP_004044459.1| - 0.015 15.3 2.5 0.015 15.3 2.5 4.4 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|313117476|ref|YP_004044459.1| - 0.018 15.2 13.3 0.068 13.4 2.0 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|313117476|ref|YP_004044459.1| - 0.3 11.7 15.3 0.92 10.1 3.7 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|313117476|ref|YP_004044459.1| - 0.42 11.4 16.6 5.4 7.8 11.7 4.1 3 1 1 4 4 3 0 4Fe-4S single cluster domain WW_1 PF18507.1 gi|313117477|ref|YP_004044460.1| - 0.22 11.2 0.4 0.35 10.6 0.4 1.3 1 0 0 1 1 1 0 WW domain Zn-ribbon_8 PF09723.10 gi|313117478|ref|YP_004044461.1| - 0.0062 16.6 0.5 0.0062 16.6 0.5 1.6 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|313117478|ref|YP_004044461.1| - 0.008 16.1 0.1 0.017 15.0 0.1 1.6 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|313117478|ref|YP_004044461.1| - 0.01 15.3 4.2 0.15 11.6 0.9 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|313117478|ref|YP_004044461.1| - 0.05 13.8 1.7 0.087 13.0 0.1 2.1 2 1 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|313117478|ref|YP_004044461.1| - 0.083 12.3 0.1 0.083 12.3 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|313117478|ref|YP_004044461.1| - 0.13 12.5 0.3 0.13 12.5 0.3 2.4 2 1 0 2 2 2 0 zinc-ribbon Prok-RING_1 PF14446.6 gi|313117478|ref|YP_004044461.1| - 7.1 6.6 8.0 73 3.4 8.0 2.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Hexapep PF00132.24 gi|313117479|ref|YP_004044462.1| - 1.3e-10 40.5 6.6 4.5e-06 26.2 1.9 2.4 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|313117479|ref|YP_004044462.1| - 5.1e-06 26.8 0.0 8.7e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|313117479|ref|YP_004044462.1| - 0.0045 16.7 0.9 0.0045 16.7 0.9 2.5 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase E1-E2_ATPase PF00122.20 gi|313117480|ref|YP_004044463.1| - 1.8e-56 190.5 3.7 1.8e-56 190.5 3.7 2.9 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|313117480|ref|YP_004044463.1| - 1.7e-34 119.1 6.4 1.7e-34 119.1 6.4 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|313117480|ref|YP_004044463.1| - 4.2e-28 99.1 4.8 2e-27 96.9 4.8 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|313117480|ref|YP_004044463.1| - 3.2e-17 62.0 0.0 6.5e-17 61.0 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|313117480|ref|YP_004044463.1| - 6.2e-14 51.8 0.0 1.8e-13 50.4 0.0 1.8 1 1 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|313117480|ref|YP_004044463.1| - 4.7e-06 26.5 0.2 0.00016 21.5 0.6 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|313117480|ref|YP_004044463.1| - 0.035 14.5 3.0 0.043 14.2 0.7 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase EMP70 PF02990.16 gi|313117480|ref|YP_004044463.1| - 0.05 12.3 2.7 0.087 11.5 2.7 1.3 1 0 0 1 1 1 0 Endomembrane protein 70 DUF2417 PF10329.9 gi|313117480|ref|YP_004044463.1| - 4.1 6.7 5.3 4.6 6.6 3.8 1.7 2 0 0 2 2 2 0 Region of unknown function (DUF2417) VIT1 PF01988.19 gi|313117481|ref|YP_004044464.1| - 1.9e-09 37.7 2.3 1.9e-09 37.7 2.3 2.0 1 1 0 2 2 2 1 VIT family GPHR_N PF12537.8 gi|313117481|ref|YP_004044464.1| - 4 7.6 8.5 85 3.3 6.6 3.4 2 1 0 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF211 PF02680.14 gi|313117482|ref|YP_004044465.1| - 9.6e-34 115.4 0.6 1.1e-33 115.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Phage_integrase PF00589.22 gi|313117483|ref|YP_004044466.1| - 3.7e-09 36.6 0.0 5e-08 32.9 0.0 2.6 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|313117483|ref|YP_004044466.1| - 0.015 15.6 0.0 0.029 14.7 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain FdsD PF11390.8 gi|313117483|ref|YP_004044466.1| - 0.039 14.3 0.0 0.28 11.6 0.0 2.2 2 0 0 2 2 2 0 NADH-dependant formate dehydrogenase delta subunit FdsD BATS PF06968.13 gi|313117484|ref|YP_004044467.1| - 5.6e-15 55.2 0.0 1.3e-14 54.1 0.0 1.6 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 gi|313117484|ref|YP_004044467.1| - 2.8e-14 53.8 0.2 4.1e-12 46.8 0.0 2.3 2 0 0 2 2 2 2 Radical SAM superfamily Pterin_bind PF00809.22 gi|313117484|ref|YP_004044467.1| - 0.096 12.3 0.2 0.23 11.1 0.2 1.6 1 1 0 1 1 1 0 Pterin binding enzyme ELFV_dehydrog PF00208.21 gi|313117485|ref|YP_004044468.1| - 0.00046 20.0 0.1 0.0009 19.0 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|313117485|ref|YP_004044468.1| - 0.0089 16.9 3.3 0.04 14.8 0.2 2.9 3 1 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold Aminotran_1_2 PF00155.21 gi|313117486|ref|YP_004044469.1| - 1.8e-61 208.4 0.0 2.1e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_3 PF00202.21 gi|313117486|ref|YP_004044469.1| - 0.0018 17.0 0.0 0.0026 16.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|313117486|ref|YP_004044469.1| - 0.0035 15.9 0.0 0.009 14.6 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|313117486|ref|YP_004044469.1| - 0.0079 15.5 0.5 0.03 13.7 0.9 1.8 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family AAA_26 PF13500.6 gi|313117487|ref|YP_004044470.1| - 2.7e-33 115.5 0.0 3.3e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313117487|ref|YP_004044470.1| - 5e-07 29.8 0.0 1.3e-06 28.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|313117487|ref|YP_004044470.1| - 2e-06 27.2 0.9 1.1e-05 24.8 0.9 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain MobB PF03205.14 gi|313117487|ref|YP_004044470.1| - 0.087 12.7 0.0 0.2 11.6 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FTHFS PF01268.19 gi|313117487|ref|YP_004044470.1| - 0.11 10.7 0.3 0.15 10.2 0.3 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase CPBP PF02517.16 gi|313117488|ref|YP_004044471.1| - 4.2e-16 59.1 7.3 4.2e-16 59.1 7.3 2.6 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease Trp_oprn_chp PF09534.10 gi|313117489|ref|YP_004044472.1| - 0.0037 17.1 1.1 0.004 17.0 1.1 1.1 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) AC_N PF16214.5 gi|313117489|ref|YP_004044472.1| - 0.14 11.3 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region FixS PF03597.15 gi|313117489|ref|YP_004044472.1| - 5.2 6.9 6.2 6.4 6.6 0.5 2.3 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Peripla_BP_2 PF01497.18 gi|313117491|ref|YP_004044474.1| - 8.7e-18 64.7 0.0 1.5e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313117491|ref|YP_004044474.1| - 0.00022 21.0 0.1 0.0004 20.1 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupin_5 PF06172.11 gi|313117491|ref|YP_004044474.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Cupin superfamily (DUF985) ABC2_membrane_2 PF12679.7 gi|313117492|ref|YP_004044475.1| - 4.4e-21 75.4 8.5 8.5e-21 74.5 8.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313117492|ref|YP_004044475.1| - 4.5e-07 29.6 4.5 4.5e-07 29.6 4.5 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313117492|ref|YP_004044475.1| - 0.0005 19.3 12.3 0.00058 19.1 12.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2561 PF10812.8 gi|313117492|ref|YP_004044475.1| - 0.029 14.4 0.4 0.029 14.4 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2561) PQQ_2 PF13360.6 gi|313117493|ref|YP_004044476.1| - 1.1e-28 100.5 6.7 1.1e-16 61.2 4.1 3.0 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|313117493|ref|YP_004044476.1| - 3e-21 75.3 15.9 0.00082 19.8 0.3 7.7 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|313117493|ref|YP_004044476.1| - 2.9e-17 61.7 1.0 0.018 14.9 0.0 6.4 6 0 0 6 6 6 4 PQQ enzyme repeat EFhand_Ca_insen PF08726.10 gi|313117493|ref|YP_004044476.1| - 0.055 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Ca2+ insensitive EF hand BCCT PF02028.17 gi|313122550|ref|YP_004044477.1| - 2.4e-115 385.8 50.5 2.8e-115 385.5 50.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Ninjurin PF04923.12 gi|313122550|ref|YP_004044477.1| - 0.081 12.9 0.9 4.4 7.3 0.0 3.4 3 0 0 3 3 3 0 Ninjurin DUF1360 PF07098.11 gi|313122550|ref|YP_004044477.1| - 0.09 12.7 2.7 0.26 11.2 0.2 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1360) BPD_transp_1 PF00528.22 gi|313122553|ref|YP_004044480.1| - 9e-15 54.9 15.0 9e-15 54.9 15.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_UL49_5 PF05702.11 gi|313122553|ref|YP_004044480.1| - 0.021 14.9 2.5 0.088 12.9 0.5 2.4 2 0 0 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein TraS PF10624.9 gi|313122553|ref|YP_004044480.1| - 0.76 9.7 4.2 1.8 8.5 0.7 2.2 2 0 0 2 2 2 0 Plasmid conjugative transfer entry exclusion protein TraS BPD_transp_1 PF00528.22 gi|313122554|ref|YP_004044481.1| - 6.2e-08 32.6 23.9 6.2e-08 32.6 23.9 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1101 PF06503.11 gi|313122554|ref|YP_004044481.1| - 0.018 14.3 0.1 0.025 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1101) ABC_tran PF00005.27 gi|313122555|ref|YP_004044482.1| - 5.8e-37 127.3 0.0 1e-36 126.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122555|ref|YP_004044482.1| - 2.2e-10 40.9 0.1 2.4e-05 24.3 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313122555|ref|YP_004044482.1| - 9.7e-06 25.2 0.0 0.011 15.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313122555|ref|YP_004044482.1| - 2.4e-05 24.6 0.1 7.4e-05 23.0 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|313122555|ref|YP_004044482.1| - 0.0001 22.8 0.0 0.00067 20.1 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|313122555|ref|YP_004044482.1| - 0.00017 21.5 0.0 0.17 11.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|313122555|ref|YP_004044482.1| - 0.0004 20.8 0.2 0.00078 19.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313122555|ref|YP_004044482.1| - 0.00091 19.2 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|313122555|ref|YP_004044482.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain NACHT PF05729.12 gi|313122555|ref|YP_004044482.1| - 0.005 16.8 0.4 0.074 13.0 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 gi|313122555|ref|YP_004044482.1| - 0.0068 16.4 0.0 0.019 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|313122555|ref|YP_004044482.1| - 0.0093 16.2 0.2 0.023 15.0 0.2 1.6 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|313122555|ref|YP_004044482.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|313122555|ref|YP_004044482.1| - 0.015 15.0 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313122555|ref|YP_004044482.1| - 0.017 15.6 0.1 0.026 15.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|313122555|ref|YP_004044482.1| - 0.018 15.4 0.0 0.039 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|313122555|ref|YP_004044482.1| - 0.019 15.1 0.1 0.036 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122555|ref|YP_004044482.1| - 0.024 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313122555|ref|YP_004044482.1| - 0.027 14.0 0.0 0.066 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313122555|ref|YP_004044482.1| - 0.04 14.5 0.0 0.095 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain TOBE_2 PF08402.10 gi|313122555|ref|YP_004044482.1| - 0.052 13.7 0.1 0.18 12.0 0.1 2.0 2 0 0 2 2 1 0 TOBE domain Mg_chelatase PF01078.21 gi|313122555|ref|YP_004044482.1| - 0.053 12.9 0.2 0.59 9.5 0.1 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|313122555|ref|YP_004044482.1| - 0.059 13.4 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|313122555|ref|YP_004044482.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|313122555|ref|YP_004044482.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|313122555|ref|YP_004044482.1| - 0.17 11.8 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|313122555|ref|YP_004044482.1| - 0.22 11.3 0.2 0.6 9.8 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|313122555|ref|YP_004044482.1| - 0.22 10.7 0.9 0.36 10.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain SBP_bac_8 PF13416.6 gi|313122556|ref|YP_004044483.1| - 1.9e-10 41.0 6.9 2.9e-10 40.4 6.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|313122556|ref|YP_004044483.1| - 9.3e-07 28.5 1.2 2e-06 27.4 0.7 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein LPD16 PF18830.1 gi|313122556|ref|YP_004044483.1| - 0.72 9.8 6.2 7.1 6.7 0.1 2.3 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 16 Fe-ADH PF00465.19 gi|313122557|ref|YP_004044484.1| - 3.5e-115 384.7 2.4 3.9e-115 384.5 2.4 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|313122557|ref|YP_004044484.1| - 7.8e-17 61.8 2.1 2e-09 37.6 0.1 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1485 PF07364.12 gi|313122558|ref|YP_004044485.1| - 7.2e-88 294.6 1.6 9.4e-88 294.2 1.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M81 MlrC_C PF07171.12 gi|313122558|ref|YP_004044485.1| - 2.6e-60 203.6 0.1 3.9e-60 203.0 0.1 1.3 1 0 0 1 1 1 1 MlrC C-terminus Aldedh PF00171.22 gi|313122559|ref|YP_004044486.1| - 4.7e-158 526.5 0.4 5.7e-158 526.2 0.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|313122559|ref|YP_004044486.1| - 0.0046 16.0 0.0 0.0097 15.0 0.0 1.5 2 0 0 2 2 2 1 Acyl-CoA reductase (LuxC) Gln-synt_C PF00120.24 gi|313122560|ref|YP_004044487.1| - 1.1e-103 346.8 0.0 3e-103 345.4 0.0 1.6 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|313122560|ref|YP_004044487.1| - 2.5e-10 40.2 0.0 4.4e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|313122560|ref|YP_004044487.1| - 4.4e-05 23.1 0.0 0.0047 16.6 0.0 2.3 2 0 0 2 2 2 2 Glutamine synthetase, beta-Grasp domain PhoD PF09423.10 gi|313122562|ref|YP_004044489.1| - 2.4e-51 174.8 0.0 4.6e-51 173.9 0.0 1.4 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 gi|313122562|ref|YP_004044489.1| - 2.7e-18 66.3 4.1 6.4e-18 65.1 4.1 1.7 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Laminin_B PF00052.18 gi|313122562|ref|YP_004044489.1| - 4.1e-18 65.6 0.0 1.1e-17 64.2 0.0 1.7 1 0 0 1 1 1 1 Laminin B (Domain IV) Pur_ac_phosph_N PF16656.5 gi|313122562|ref|YP_004044489.1| - 7.2e-09 36.1 6.5 2.7e-08 34.3 6.5 2.0 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain fn3 PF00041.21 gi|313122562|ref|YP_004044489.1| - 0.053 13.9 1.8 0.16 12.3 1.0 2.3 2 0 0 2 2 2 0 Fibronectin type III domain TAT_signal PF10518.9 gi|313122562|ref|YP_004044489.1| - 0.058 13.3 0.5 0.14 12.1 0.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|313122564|ref|YP_004044491.1| - 1.4e-19 70.5 35.9 4.1e-09 36.5 5.7 3.4 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|313122564|ref|YP_004044491.1| - 2.4e-16 60.2 3.5 2.4e-16 60.2 3.5 3.7 1 1 3 4 4 4 2 Pectate lyase superfamily protein NosD PF05048.13 gi|313122564|ref|YP_004044491.1| - 2.4e-11 43.4 23.7 4.7e-05 22.8 1.3 3.9 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) End_N_terminal PF12218.8 gi|313122564|ref|YP_004044491.1| - 0.019 14.6 0.2 0.072 12.8 0.0 2.1 2 0 0 2 2 2 0 N terminal extension of bacteriophage endosialidase HTH_20 PF12840.7 gi|313122567|ref|YP_004044494.1| - 0.12 12.4 0.5 0.32 11.1 0.5 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Thymopoietin PF08198.11 gi|313122567|ref|YP_004044494.1| - 0.14 11.8 0.0 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 Thymopoietin protein Usp PF00582.26 gi|313122569|ref|YP_004044496.1| - 2.5e-26 92.9 1.2 2.9e-26 92.7 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family baeRF_family10 PF18854.1 gi|313122569|ref|YP_004044496.1| - 0.0025 18.1 1.2 0.012 15.9 1.2 1.9 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 ATP-grasp_5 PF13549.6 gi|313122569|ref|YP_004044496.1| - 0.023 14.1 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain PHO4 PF01384.20 gi|313122570|ref|YP_004044497.1| - 2e-40 138.9 31.3 2.7e-40 138.4 31.3 1.2 1 0 0 1 1 1 1 Phosphate transporter family PQQ_2 PF13360.6 gi|313122571|ref|YP_004044498.1| - 1.8e-39 135.7 12.5 1.4e-26 93.5 6.1 2.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|313122571|ref|YP_004044498.1| - 4.7e-36 122.4 16.6 1.4e-06 28.6 0.2 8.1 7 1 1 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|313122571|ref|YP_004044498.1| - 3e-26 90.1 4.2 8.9e-05 22.2 0.1 7.3 8 0 0 8 8 8 5 PQQ enzyme repeat CBM_6 PF03422.15 gi|313122571|ref|YP_004044498.1| - 0.013 15.8 0.4 0.027 14.8 0.4 1.5 1 0 0 1 1 1 0 Carbohydrate binding module (family 6) Arylsulfotrans PF05935.11 gi|313122571|ref|YP_004044498.1| - 0.055 12.4 0.0 0.11 11.4 0.0 1.4 1 1 0 1 1 1 0 Arylsulfotransferase (ASST) Pentapeptide_3 PF13576.6 gi|313122572|ref|YP_004044499.1| - 7.8e-10 38.8 38.6 0.0097 16.0 14.3 6.3 3 1 4 7 7 7 6 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|313122573|ref|YP_004044500.1| - 3.3e-07 29.8 2.6 5.9e-07 29.0 0.6 2.1 2 0 0 2 2 2 1 Pentapeptide repeats (8 copies) YqjK PF13997.6 gi|313122573|ref|YP_004044500.1| - 0.079 13.2 1.7 0.13 12.5 0.2 2.0 2 0 0 2 2 2 0 YqjK-like protein Aldedh PF00171.22 gi|313122574|ref|YP_004044501.1| - 8.6e-172 571.8 0.2 9.8e-172 571.6 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TraB PF01963.17 gi|313122575|ref|YP_004044502.1| - 0.0078 16.1 0.4 0.54 10.1 0.4 2.5 1 1 0 1 1 1 1 TraB family TAT_signal PF10518.9 gi|313122575|ref|YP_004044502.1| - 0.18 11.7 3.9 0.32 10.9 3.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence IucA_IucC PF04183.12 gi|313122577|ref|YP_004044504.1| - 2.7e-56 190.8 0.0 4.1e-56 190.2 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|313122577|ref|YP_004044504.1| - 1.7e-31 109.9 0.0 5.5e-31 108.2 0.0 1.9 2 0 0 2 2 2 1 Ferric iron reductase FhuF-like transporter Mus7 PF09462.10 gi|313122577|ref|YP_004044504.1| - 0.037 12.9 0.0 0.05 12.5 0.0 1.1 1 0 0 1 1 1 0 Mus7/MMS22 family ABC_membrane PF00664.23 gi|313122578|ref|YP_004044505.1| - 3.1e-41 141.8 1.0 4e-41 141.5 1.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|313122578|ref|YP_004044505.1| - 1.4e-34 119.5 0.0 2.9e-34 118.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|313122578|ref|YP_004044505.1| - 4.3e-05 24.0 4.0 0.00033 21.1 4.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122578|ref|YP_004044505.1| - 0.00035 20.9 0.4 0.0027 18.0 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|313122578|ref|YP_004044505.1| - 0.00089 19.7 0.0 0.016 15.6 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|313122578|ref|YP_004044505.1| - 0.0012 18.2 0.1 0.0029 16.9 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 gi|313122578|ref|YP_004044505.1| - 0.0015 18.6 0.2 0.01 15.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|313122578|ref|YP_004044505.1| - 0.0019 18.0 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313122578|ref|YP_004044505.1| - 0.003 17.7 0.0 0.0098 16.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313122578|ref|YP_004044505.1| - 0.0035 17.3 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|313122578|ref|YP_004044505.1| - 0.0039 17.7 0.0 0.015 15.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|313122578|ref|YP_004044505.1| - 0.0065 15.9 0.1 0.21 11.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|313122578|ref|YP_004044505.1| - 0.0077 16.2 0.2 1.2 9.1 0.0 2.4 1 1 1 2 2 2 1 NTPase TsaE PF02367.17 gi|313122578|ref|YP_004044505.1| - 0.0095 15.9 0.0 0.58 10.2 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS_kinase PF01583.20 gi|313122578|ref|YP_004044505.1| - 0.016 15.1 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_29 PF13555.6 gi|313122578|ref|YP_004044505.1| - 0.028 14.2 0.0 0.074 12.8 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|313122578|ref|YP_004044505.1| - 0.03 14.1 3.3 0.16 11.7 3.3 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|313122578|ref|YP_004044505.1| - 0.036 13.8 0.1 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_21 PF13304.6 gi|313122578|ref|YP_004044505.1| - 0.036 13.9 0.1 0.35 10.6 0.0 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 gi|313122578|ref|YP_004044505.1| - 0.055 12.5 0.0 0.28 10.2 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|313122578|ref|YP_004044505.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase DUF87 PF01935.17 gi|313122578|ref|YP_004044505.1| - 0.062 13.4 0.2 0.17 12.0 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain Guanylate_kin PF00625.21 gi|313122578|ref|YP_004044505.1| - 0.18 11.5 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase AAA_25 PF13481.6 gi|313122578|ref|YP_004044505.1| - 0.18 11.4 1.5 0.93 9.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|313122578|ref|YP_004044505.1| - 0.2 11.4 0.9 2.6 7.8 0.9 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase IucA_IucC PF04183.12 gi|313122580|ref|YP_004044507.1| - 2.9e-71 239.8 0.0 4e-71 239.3 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|313122580|ref|YP_004044507.1| - 1.3e-37 129.7 0.4 3e-37 128.5 0.4 1.7 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Gln-synt_C PF00120.24 gi|313122581|ref|YP_004044508.1| - 4.3e-98 328.5 0.0 5.1e-98 328.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|313122581|ref|YP_004044508.1| - 6.2e-14 51.7 0.0 1.2e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|313122581|ref|YP_004044508.1| - 0.038 13.7 0.0 0.96 9.2 0.0 2.9 3 0 0 3 3 3 0 Glutamine synthetase, beta-Grasp domain Aminotran_3 PF00202.21 gi|313122582|ref|YP_004044509.1| - 1.4e-89 300.6 0.0 1.7e-89 300.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pyridoxal_deC PF00282.19 gi|313122583|ref|YP_004044510.1| - 1e-59 202.2 0.0 1.2e-59 201.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|313122583|ref|YP_004044510.1| - 8.3e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|313122583|ref|YP_004044510.1| - 0.0011 18.0 0.0 0.0039 16.2 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V IucA_IucC PF04183.12 gi|313122584|ref|YP_004044511.1| - 1.3e-58 198.4 0.0 1.9e-58 197.9 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|313122584|ref|YP_004044511.1| - 7.2e-31 107.8 0.0 1.3e-30 107.0 0.0 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter RraA-like PF03737.15 gi|313122585|ref|YP_004044512.1| - 2e-35 122.2 2.1 2.5e-35 121.8 2.1 1.1 1 0 0 1 1 1 1 Aldolase/RraA PCP_red PF08369.10 gi|313122585|ref|YP_004044512.1| - 0.0038 17.4 0.1 0.93 9.8 0.0 2.5 2 0 0 2 2 2 2 Proto-chlorophyllide reductase 57 kD subunit PALP PF00291.25 gi|313122585|ref|YP_004044512.1| - 0.041 13.3 0.5 0.054 12.9 0.5 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DDE_Tnp_1 PF01609.21 gi|313122586|ref|YP_004044513.1| - 2.6e-09 37.1 0.0 4.5e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|313122586|ref|YP_004044513.1| - 0.006 14.9 0.2 0.13 10.5 0.2 2.3 1 1 0 1 1 1 1 Transposase DDE domain group 1 RNA_pol_Rpb2_5 PF04567.17 gi|313122588|ref|YP_004044515.1| - 0.029 14.9 0.1 0.049 14.2 0.0 1.6 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 5 TAT_signal PF10518.9 gi|313122589|ref|YP_004044516.1| - 0.0074 16.1 0.1 0.018 14.9 0.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4179 PF13786.6 gi|313122589|ref|YP_004044516.1| - 0.044 14.3 0.1 0.11 13.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) UCR_Fe-S_N PF10399.9 gi|313122589|ref|YP_004044516.1| - 0.054 12.9 0.0 0.14 11.6 0.0 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PepSY_2 PF13670.6 gi|313122589|ref|YP_004044516.1| - 0.13 12.3 0.1 0.33 11.0 0.1 1.7 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain Cadherin PF00028.17 gi|313122590|ref|YP_004044517.1| - 0.0019 18.6 1.0 0.0031 17.9 1.0 1.3 1 0 0 1 1 1 1 Cadherin domain TspO_MBR PF03073.15 gi|313122591|ref|YP_004044518.1| - 0.58 10.2 10.4 1.2 9.1 10.1 1.6 1 1 1 2 2 2 0 TspO/MBR family Trypsin PF00089.26 gi|313122592|ref|YP_004044519.1| - 0.00051 19.9 1.1 0.0008 19.3 1.1 1.3 1 0 0 1 1 1 1 Trypsin MarR_2 PF12802.7 gi|313122594|ref|YP_004044521.1| - 3e-07 30.2 0.0 4.8e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313122594|ref|YP_004044521.1| - 5.6e-05 22.9 0.0 8.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|313122594|ref|YP_004044521.1| - 0.00048 19.7 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR PF01047.22 gi|313122594|ref|YP_004044521.1| - 0.00078 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|313122594|ref|YP_004044521.1| - 0.00092 19.2 0.0 0.0012 18.7 0.0 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|313122594|ref|YP_004044521.1| - 0.0014 18.3 0.0 0.0057 16.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|313122594|ref|YP_004044521.1| - 0.0022 17.6 0.1 0.0038 16.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|313122594|ref|YP_004044521.1| - 0.0049 16.4 0.1 0.0076 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|313122594|ref|YP_004044521.1| - 0.0085 15.8 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313122594|ref|YP_004044521.1| - 0.0099 15.7 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|313122594|ref|YP_004044521.1| - 0.011 16.1 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|313122594|ref|YP_004044521.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|313122594|ref|YP_004044521.1| - 0.016 15.4 0.0 0.025 14.8 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_IclR PF09339.10 gi|313122594|ref|YP_004044521.1| - 0.032 14.0 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|313122594|ref|YP_004044521.1| - 0.15 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2309 PF10070.9 gi|313122595|ref|YP_004044522.1| - 6.4e-262 871.3 0.0 7.3e-262 871.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF883 PF05957.13 gi|313122595|ref|YP_004044522.1| - 5.8 7.6 7.5 1.3 9.7 0.1 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Proton_antipo_M PF00361.20 gi|313122596|ref|YP_004044523.1| - 1.1e-28 100.2 9.9 1.1e-28 100.2 9.9 1.7 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|313122597|ref|YP_004044524.1| - 7e-11 42.0 1.0 7e-11 42.0 1.0 2.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ThrE PF06738.12 gi|313122597|ref|YP_004044524.1| - 0.46 9.8 8.4 0.033 13.6 3.7 1.5 2 0 0 2 2 2 0 Putative threonine/serine exporter NDUF_B12 PF08122.12 gi|313122597|ref|YP_004044524.1| - 6.3 6.9 8.6 0.35 10.9 1.4 2.6 1 1 3 4 4 4 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF2866 PF11065.8 gi|313122598|ref|YP_004044525.1| - 0.074 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2866) Amidohydro_1 PF01979.20 gi|313122599|ref|YP_004044526.1| - 3.9e-30 105.3 0.1 5.7e-28 98.2 0.1 2.7 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|313122599|ref|YP_004044526.1| - 7.9e-10 38.6 0.0 1.1e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|313122599|ref|YP_004044526.1| - 2.7e-07 30.4 7.6 6.1e-07 29.3 2.2 2.8 1 1 1 2 2 2 2 Amidohydrolase family HTH_24 PF13412.6 gi|313122600|ref|YP_004044527.1| - 3.2e-15 55.4 0.2 5e-15 54.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313122600|ref|YP_004044527.1| - 5.4e-13 48.5 0.7 1.1e-12 47.5 0.7 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313122600|ref|YP_004044527.1| - 1.3e-07 31.4 0.0 2.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|313122600|ref|YP_004044527.1| - 3.9e-06 26.7 0.0 8.8e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313122600|ref|YP_004044527.1| - 6.2e-06 25.9 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313122600|ref|YP_004044527.1| - 8.9e-06 25.8 0.0 2e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|313122600|ref|YP_004044527.1| - 5e-05 23.6 0.0 0.00017 21.9 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|313122600|ref|YP_004044527.1| - 5.7e-05 22.7 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313122600|ref|YP_004044527.1| - 5.7e-05 22.9 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313122600|ref|YP_004044527.1| - 9.8e-05 22.3 0.0 0.00024 21.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|313122600|ref|YP_004044527.1| - 0.0001 22.0 0.1 0.0018 18.0 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313122600|ref|YP_004044527.1| - 0.00021 21.2 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|313122600|ref|YP_004044527.1| - 0.00028 20.9 0.0 0.00053 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|313122600|ref|YP_004044527.1| - 0.0027 17.6 0.0 0.0099 15.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.6 gi|313122600|ref|YP_004044527.1| - 0.0056 16.6 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|313122600|ref|YP_004044527.1| - 0.006 16.6 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_23 PF13384.6 gi|313122600|ref|YP_004044527.1| - 0.0069 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|313122600|ref|YP_004044527.1| - 0.0075 15.9 0.0 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Mga PF08280.11 gi|313122600|ref|YP_004044527.1| - 0.01 15.9 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_10 PF04967.12 gi|313122600|ref|YP_004044527.1| - 0.019 14.7 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.10 gi|313122600|ref|YP_004044527.1| - 0.021 14.8 0.1 0.07 13.1 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|313122600|ref|YP_004044527.1| - 0.024 15.1 0.1 0.064 13.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|313122600|ref|YP_004044527.1| - 0.028 13.8 0.1 0.071 12.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|313122600|ref|YP_004044527.1| - 0.042 13.7 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|313122600|ref|YP_004044527.1| - 0.056 13.5 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HrcA_DNA-bdg PF03444.15 gi|313122600|ref|YP_004044527.1| - 0.067 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_19 PF12844.7 gi|313122600|ref|YP_004044527.1| - 0.1 12.7 0.4 0.22 11.5 0.4 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_antitermQ PF06530.12 gi|313122600|ref|YP_004044527.1| - 0.11 12.5 0.1 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 Phage antitermination protein Q HTH_1 PF00126.27 gi|313122600|ref|YP_004044527.1| - 0.16 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Peripla_BP_2 PF01497.18 gi|313122601|ref|YP_004044528.1| - 1.1e-09 38.3 0.5 1.1e-09 38.3 0.5 1.8 1 1 0 2 2 2 1 Periplasmic binding protein TauE PF01925.19 gi|313122602|ref|YP_004044529.1| - 2.7e-39 135.2 39.2 3.3e-39 134.9 39.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CBS PF00571.28 gi|313122603|ref|YP_004044530.1| - 1.3e-09 38.3 1.4 0.00013 22.3 0.0 2.6 2 0 0 2 2 2 2 CBS domain HEPN_Swt1 PF18731.1 gi|313122603|ref|YP_004044530.1| - 0.0001 22.6 0.0 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 Swt1-like HEPN LTD PF00932.19 gi|313122605|ref|YP_004044532.1| - 0.0027 18.0 0.0 0.0045 17.3 0.0 1.4 1 0 0 1 1 1 1 Lamin Tail Domain DUF3147 PF11345.8 gi|313122605|ref|YP_004044532.1| - 0.035 14.5 4.5 0.035 14.5 4.5 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3147) Phage_holin_2_4 PF16082.5 gi|313122605|ref|YP_004044532.1| - 0.25 11.1 8.7 0.37 10.5 0.3 3.2 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like Tmemb_14 PF03647.13 gi|313122605|ref|YP_004044532.1| - 1.2 10.0 6.8 1.3 9.8 0.9 2.9 2 1 0 2 2 2 0 Transmembrane proteins 14C DUF4131 PF13567.6 gi|313122605|ref|YP_004044532.1| - 1.8 8.2 10.9 0.55 9.9 2.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) LysM PF01476.20 gi|313122607|ref|YP_004044534.1| - 1.8e-08 34.3 0.0 4.1e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 LysM domain Phage_GPD PF05954.11 gi|313122608|ref|YP_004044535.1| - 1.9e-14 53.7 0.2 2.4e-14 53.3 0.2 1.2 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Phage-tail_3 PF13550.6 gi|313122608|ref|YP_004044535.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative phage tail protein DUF3540 PF12059.8 gi|313122609|ref|YP_004044536.1| - 0.00025 20.9 0.3 0.12 12.1 0.5 3.0 2 1 1 3 3 3 2 Protein of unknown function (DUF3540) Phage_base_V PF04717.12 gi|313122609|ref|YP_004044536.1| - 0.00036 20.4 0.0 0.0006 19.7 0.0 1.4 1 0 0 1 1 1 1 Type VI secretion system, phage-baseplate injector G8 PF10162.9 gi|313122609|ref|YP_004044536.1| - 0.0047 17.0 0.8 0.0091 16.1 0.8 1.5 1 0 0 1 1 1 1 G8 domain DUF2345 PF10106.9 gi|313122609|ref|YP_004044536.1| - 0.01 15.7 5.3 0.015 15.1 3.1 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2345) Sarcoglycan_1 PF04790.13 gi|313122609|ref|YP_004044536.1| - 0.019 14.3 5.0 0.12 11.7 5.0 2.0 1 1 0 1 1 1 0 Sarcoglycan complex subunit protein Pilus_CpaD PF09476.10 gi|313122609|ref|YP_004044536.1| - 0.032 14.0 0.2 0.048 13.4 0.2 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) PAAR_motif PF05488.13 gi|313122610|ref|YP_004044537.1| - 2.2e-20 72.6 7.5 2.3e-11 43.7 2.2 3.0 1 1 2 3 3 3 3 PAAR motif DUF4150 PF13665.6 gi|313122610|ref|YP_004044537.1| - 0.00051 20.2 0.0 0.11 12.6 0.0 2.5 1 1 2 3 3 3 2 Domain of unknown function (DUF4150) GPW_gp25 PF04965.14 gi|313122611|ref|YP_004044538.1| - 2.7e-25 87.9 0.1 3.2e-25 87.7 0.1 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.8 gi|313122611|ref|YP_004044538.1| - 2.8e-05 24.2 0.0 3.7e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) Baseplate_J PF04865.14 gi|313122612|ref|YP_004044539.1| - 1.3e-17 63.8 0.4 5.8e-14 51.9 0.2 2.3 2 0 0 2 2 2 2 Baseplate J-like protein Baseplate_J PF04865.14 gi|313122613|ref|YP_004044540.1| - 3e-16 59.4 6.5 2.6e-14 53.0 2.0 2.5 3 0 0 3 3 3 2 Baseplate J-like protein Tail_P2_I PF09684.10 gi|313122614|ref|YP_004044541.1| - 2.7e-06 27.3 0.0 6.9e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Phage tail protein (Tail_P2_I) Tachylectin PF14517.6 gi|313122614|ref|YP_004044541.1| - 0.03 13.9 0.0 0.25 10.8 0.0 2.2 2 0 0 2 2 2 0 Tachylectin PQQ_3 PF13570.6 gi|313122614|ref|YP_004044541.1| - 0.031 14.8 10.7 5.4 7.6 1.3 5.3 4 1 1 5 5 5 0 PQQ-like domain DUF4157 PF13699.6 gi|313122615|ref|YP_004044542.1| - 5.4e-31 106.7 3.2 8.8e-31 106.0 1.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313122615|ref|YP_004044542.1| - 0.025 14.9 0.5 0.025 14.9 0.5 1.8 2 0 0 2 2 2 0 Effector protein Fmp27_WPPW PF10359.9 gi|313122615|ref|YP_004044542.1| - 0.078 11.8 2.7 0.14 11.0 2.7 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain AATF-Che1 PF13339.6 gi|313122615|ref|YP_004044542.1| - 0.57 10.9 6.6 0.11 13.2 2.5 1.9 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor Fib_alpha PF08702.10 gi|313122615|ref|YP_004044542.1| - 0.91 9.7 5.6 0.76 10.0 2.6 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4407 PF14362.6 gi|313122615|ref|YP_004044542.1| - 1 8.7 5.4 1.9 7.7 5.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Atg14 PF10186.9 gi|313122615|ref|YP_004044542.1| - 2.7 7.0 6.8 4.9 6.1 6.8 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|313122615|ref|YP_004044542.1| - 7.5 6.6 13.5 7.4 6.6 8.8 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF4157 PF13699.6 gi|313122617|ref|YP_004044544.1| - 3.8e-18 65.5 1.4 9e-18 64.3 1.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) EXOSC1 PF10447.9 gi|313122617|ref|YP_004044544.1| - 0.0076 16.8 2.7 0.16 12.6 0.4 2.5 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 HlyD_2 PF12700.7 gi|313122617|ref|YP_004044544.1| - 0.024 13.4 0.1 0.035 12.8 0.1 1.2 1 0 0 1 1 1 0 HlyD family secretion protein Peptidase_M91 PF14891.6 gi|313122617|ref|YP_004044544.1| - 0.03 14.6 5.0 0.031 14.6 0.3 2.5 2 1 0 2 2 2 0 Effector protein RD3 PF14473.6 gi|313122617|ref|YP_004044544.1| - 0.031 14.1 0.2 0.031 14.1 0.2 1.9 2 0 0 2 2 2 0 RD3 protein SprT-like PF10263.9 gi|313122617|ref|YP_004044544.1| - 0.049 13.5 0.3 8 6.4 0.0 2.3 2 0 0 2 2 2 0 SprT-like family MtrG PF04210.13 gi|313122617|ref|YP_004044544.1| - 0.16 11.9 0.5 12 5.9 0.1 3.2 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF3847 PF12958.7 gi|313122617|ref|YP_004044544.1| - 6.7 6.9 7.4 19 5.5 1.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3847) Mst1_SARAH PF11629.8 gi|313122617|ref|YP_004044544.1| - 8.9 6.5 9.1 1.1 9.4 1.7 2.6 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 RLAN PF14401.6 gi|313122619|ref|YP_004044546.1| - 0.11 12.1 0.1 0.19 11.4 0.1 1.5 1 1 0 1 1 1 0 RimK-like ATPgrasp N-terminal domain DUF4157 PF13699.6 gi|313122621|ref|YP_004044548.1| - 2e-06 27.9 0.7 2.8e-06 27.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313122621|ref|YP_004044548.1| - 0.1 12.9 0.4 0.11 12.8 0.4 1.1 1 0 0 1 1 1 0 Effector protein ArsA_ATPase PF02374.15 gi|313122622|ref|YP_004044549.1| - 3.8e-72 243.0 0.0 4.3e-72 242.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|313122622|ref|YP_004044549.1| - 6.4e-07 29.1 0.3 0.002 17.6 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|313122622|ref|YP_004044549.1| - 1e-06 28.8 0.0 2.8e-06 27.4 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|313122622|ref|YP_004044549.1| - 1.3e-05 25.1 0.0 3.7e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|313122622|ref|YP_004044549.1| - 0.0055 16.2 0.0 0.0087 15.6 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|313122622|ref|YP_004044549.1| - 0.025 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IMPa_N_2 PF18650.1 gi|313122622|ref|YP_004044549.1| - 0.045 13.0 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 Immunomodulating metalloprotease N-terminal domain Zeta_toxin PF06414.12 gi|313122622|ref|YP_004044549.1| - 0.096 12.0 0.1 0.23 10.7 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin Fer4_NifH PF00142.18 gi|313122622|ref|YP_004044549.1| - 0.18 11.2 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|313122622|ref|YP_004044549.1| - 0.33 10.5 6.6 1.9 8.0 3.9 2.9 1 1 1 2 2 2 0 AAA domain CAMP_factor PF07373.11 gi|313122624|ref|YP_004044551.1| - 0.043 13.4 0.9 34 3.9 0.0 3.1 2 1 1 3 3 3 0 CAMP factor (Cfa) NPV_P10 PF05531.12 gi|313122624|ref|YP_004044551.1| - 0.34 11.4 3.6 27 5.3 3.6 3.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|313122624|ref|YP_004044551.1| - 2 7.3 5.5 3.4 6.5 5.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein FliJ PF02050.16 gi|313122624|ref|YP_004044551.1| - 2.1 8.6 11.6 0.2 11.9 4.2 2.7 3 1 1 4 4 4 0 Flagellar FliJ protein Phage_sheath_1 PF04984.14 gi|313122625|ref|YP_004044552.1| - 9.8e-28 97.1 0.0 1.4e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1C PF17482.2 gi|313122625|ref|YP_004044552.1| - 1.1e-19 70.3 0.0 2.6e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Phage_sheath_1N PF17481.2 gi|313122625|ref|YP_004044552.1| - 0.002 18.6 1.4 0.013 16.0 0.1 2.6 2 1 1 3 3 3 1 Phage tail sheath protein beta-sandwich domain Phage_T4_gp19 PF06841.12 gi|313122626|ref|YP_004044553.1| - 9e-21 74.1 0.0 1e-20 74.0 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 HAGH_C PF16123.5 gi|313122626|ref|YP_004044553.1| - 0.012 16.1 0.1 0.021 15.3 0.1 1.4 1 0 0 1 1 1 0 Hydroxyacylglutathione hydrolase C-terminus Phage_T4_gp19 PF06841.12 gi|313122630|ref|YP_004044557.1| - 4.7e-35 120.4 0.1 5.3e-35 120.2 0.1 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 DUF4255 PF14065.6 gi|313122631|ref|YP_004044558.1| - 1.5e-31 109.4 0.0 1.7e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) AAA PF00004.29 gi|313122632|ref|YP_004044559.1| - 5.5e-30 104.5 0.0 2e-28 99.4 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|313122632|ref|YP_004044559.1| - 3.8e-05 23.4 0.7 0.00088 19.0 0.7 2.3 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_33 PF13671.6 gi|313122632|ref|YP_004044559.1| - 0.00044 20.4 0.0 0.07 13.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|313122632|ref|YP_004044559.1| - 0.0029 17.7 0.1 0.0057 16.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|313122632|ref|YP_004044559.1| - 0.0035 16.6 0.0 0.0082 15.4 0.0 1.6 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|313122632|ref|YP_004044559.1| - 0.0075 16.8 0.0 0.049 14.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|313122632|ref|YP_004044559.1| - 0.0075 16.5 1.8 0.46 10.7 0.1 3.5 2 1 1 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|313122632|ref|YP_004044559.1| - 0.021 15.2 0.0 0.15 12.4 0.0 2.4 3 0 0 3 3 3 0 RNA helicase AAA_14 PF13173.6 gi|313122632|ref|YP_004044559.1| - 0.025 14.6 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.6 gi|313122632|ref|YP_004044559.1| - 0.048 13.8 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 Cytidylate kinase-like family RuvB_N PF05496.12 gi|313122632|ref|YP_004044559.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|313122632|ref|YP_004044559.1| - 0.082 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4157 PF13699.6 gi|313122633|ref|YP_004044560.1| - 3.2e-31 107.4 1.2 9.3e-31 105.9 1.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313122633|ref|YP_004044560.1| - 0.024 14.9 0.8 0.053 13.8 0.2 1.8 1 1 0 1 1 1 0 Effector protein PKHD_C PF18331.1 gi|313122633|ref|YP_004044560.1| - 4.3 7.5 5.8 4.8 7.3 0.1 3.4 3 1 1 4 4 4 0 PKHD-type hydroxylase C-terminal domain Plug PF07715.15 gi|313122634|ref|YP_004044561.1| - 0.027 15.0 0.0 0.04 14.5 0.0 1.2 1 0 0 1 1 1 0 TonB-dependent Receptor Plug Domain Fmp27_WPPW PF10359.9 gi|313122635|ref|YP_004044562.1| - 0.0012 17.8 0.5 0.0013 17.7 0.5 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain LMP PF04778.12 gi|313122635|ref|YP_004044562.1| - 0.0037 17.2 4.0 0.006 16.5 4.0 1.3 1 0 0 1 1 1 1 LMP repeated region DUF812 PF05667.11 gi|313122635|ref|YP_004044562.1| - 0.0069 15.3 4.0 0.0092 14.9 4.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ASD2 PF08687.11 gi|313122635|ref|YP_004044562.1| - 0.0077 15.8 4.4 0.013 15.1 4.4 1.3 1 0 0 1 1 1 1 Apx/Shroom domain ASD2 Bacillus_HBL PF05791.11 gi|313122635|ref|YP_004044562.1| - 0.009 15.9 5.6 0.016 15.1 5.6 1.3 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) DUF2884 PF11101.8 gi|313122635|ref|YP_004044562.1| - 0.012 15.1 6.7 0.02 14.4 5.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) HemX PF04375.14 gi|313122635|ref|YP_004044562.1| - 0.014 14.8 7.1 0.022 14.1 7.1 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Golgin_A5 PF09787.9 gi|313122635|ref|YP_004044562.1| - 0.017 14.6 6.1 0.029 13.8 6.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF1664 PF07889.12 gi|313122635|ref|YP_004044562.1| - 0.027 14.5 2.3 0.062 13.3 2.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Stathmin PF00836.19 gi|313122635|ref|YP_004044562.1| - 0.043 13.8 9.6 0.084 12.8 9.6 1.4 1 0 0 1 1 1 0 Stathmin family DUF4559 PF15112.6 gi|313122635|ref|YP_004044562.1| - 0.045 13.4 2.2 0.058 13.1 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Cluap1 PF10234.9 gi|313122635|ref|YP_004044562.1| - 0.062 12.7 4.0 0.089 12.2 4.0 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 Vac_Fusion PF02346.16 gi|313122635|ref|YP_004044562.1| - 0.065 12.9 2.3 2.9 7.6 2.3 2.5 1 1 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 TMPIT PF07851.13 gi|313122635|ref|YP_004044562.1| - 0.088 12.0 1.9 0.12 11.6 1.9 1.1 1 0 0 1 1 1 0 TMPIT-like protein Cauli_AT PF03233.13 gi|313122635|ref|YP_004044562.1| - 0.11 12.4 2.5 0.19 11.6 2.5 1.4 1 0 0 1 1 1 0 Aphid transmission protein Fib_alpha PF08702.10 gi|313122635|ref|YP_004044562.1| - 0.13 12.5 4.1 0.21 11.7 4.1 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Sec34 PF04136.15 gi|313122635|ref|YP_004044562.1| - 0.13 12.1 3.6 0.22 11.4 3.6 1.4 1 0 0 1 1 1 0 Sec34-like family Fzo_mitofusin PF04799.13 gi|313122635|ref|YP_004044562.1| - 0.25 10.9 4.2 0.45 10.0 4.2 1.4 1 0 0 1 1 1 0 fzo-like conserved region DUF726 PF05277.12 gi|313122635|ref|YP_004044562.1| - 0.34 9.8 1.5 0.5 9.2 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) CHDCT2 PF08074.11 gi|313122635|ref|YP_004044562.1| - 0.39 10.9 2.1 0.92 9.7 1.9 1.7 2 0 0 2 2 1 0 CHDCT2 (NUC038) domain KxDL PF10241.9 gi|313122635|ref|YP_004044562.1| - 0.41 11.0 5.1 1.4 9.3 5.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein COG5 PF10392.9 gi|313122635|ref|YP_004044562.1| - 0.41 10.8 4.2 0.83 9.8 4.2 1.5 1 0 0 1 1 1 0 Golgi transport complex subunit 5 Prominin PF05478.11 gi|313122635|ref|YP_004044562.1| - 0.51 8.2 2.3 0.68 7.8 2.3 1.1 1 0 0 1 1 1 0 Prominin V_ATPase_I PF01496.19 gi|313122635|ref|YP_004044562.1| - 0.56 8.1 5.1 0.83 7.5 5.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GPO PF05929.11 gi|313122635|ref|YP_004044562.1| - 0.72 9.4 9.6 5.7 6.5 0.2 2.2 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4407 PF14362.6 gi|313122635|ref|YP_004044562.1| - 0.72 9.2 8.1 1.6 8.0 8.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) SlyX PF04102.12 gi|313122635|ref|YP_004044562.1| - 0.81 10.4 6.6 5.4 7.7 0.4 2.7 1 1 1 2 2 2 0 SlyX XhlA PF10779.9 gi|313122635|ref|YP_004044562.1| - 1 9.6 11.7 0.45 10.8 1.9 3.0 2 1 1 3 3 2 0 Haemolysin XhlA NPV_P10 PF05531.12 gi|313122635|ref|YP_004044562.1| - 1.4 9.5 5.5 2 8.9 3.9 2.1 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|313122635|ref|YP_004044562.1| - 2.1 9.1 6.8 0.48 11.2 3.4 1.7 2 0 0 2 2 1 0 Occludin homology domain FlaC_arch PF05377.11 gi|313122635|ref|YP_004044562.1| - 5 7.6 7.3 34 4.9 1.1 2.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF948 PF06103.11 gi|313122635|ref|YP_004044562.1| - 5.1 7.4 6.9 16 5.8 5.6 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TMF_DNA_bd PF12329.8 gi|313122635|ref|YP_004044562.1| - 5.2 7.1 15.9 25 4.9 9.8 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding T7SS_ESX_EspC PF10824.8 gi|313122635|ref|YP_004044562.1| - 7.2 7.2 11.5 3 8.4 1.5 3.3 2 1 3 5 5 4 0 Excreted virulence factor EspC, type VII ESX diderm ABC_tran PF00005.27 gi|313122639|ref|YP_004044566.1| - 3.1e-23 82.8 0.0 4.9e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122639|ref|YP_004044566.1| - 7.9e-10 39.0 0.2 2.5e-06 27.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313122639|ref|YP_004044566.1| - 0.0003 21.5 0.1 0.00067 20.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|313122639|ref|YP_004044566.1| - 0.0082 15.9 0.1 0.06 13.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain SRP54 PF00448.22 gi|313122639|ref|YP_004044566.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|313122639|ref|YP_004044566.1| - 0.024 13.6 0.1 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|313122639|ref|YP_004044566.1| - 0.075 13.5 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313122639|ref|YP_004044566.1| - 0.079 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313122639|ref|YP_004044566.1| - 0.21 11.0 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.7 gi|313122640|ref|YP_004044567.1| - 3.5e-16 59.3 17.3 7.9e-16 58.2 17.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313122640|ref|YP_004044567.1| - 0.0041 16.3 22.2 0.0058 15.8 22.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3767 PF12597.8 gi|313122640|ref|YP_004044567.1| - 0.08 12.8 0.3 0.16 11.8 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) ABC2_membrane_2 PF12679.7 gi|313122641|ref|YP_004044568.1| - 1.4e-16 60.7 14.5 2e-16 60.2 14.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313122641|ref|YP_004044568.1| - 6.2e-07 29.6 1.2 6.2e-07 29.6 1.2 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313122641|ref|YP_004044568.1| - 6.6e-06 25.8 4.3 1.1e-05 25.2 4.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313122641|ref|YP_004044568.1| - 0.025 13.7 15.4 0.033 13.3 15.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein YobH PF13996.6 gi|313122641|ref|YP_004044568.1| - 0.71 10.0 6.0 3.1 7.9 0.0 3.1 2 1 0 2 2 2 0 YobH-like protein Exonuc_VIII PF06630.11 gi|313122642|ref|YP_004044569.1| - 0.094 12.6 0.9 0.37 10.6 0.1 2.1 2 0 0 2 2 2 0 Enterobacterial exodeoxyribonuclease VIII Peptidase_S8 PF00082.22 gi|313122643|ref|YP_004044570.1| - 5.3e-25 88.3 0.0 6.5e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Subtilase family Amidohydro_1 PF01979.20 gi|313122643|ref|YP_004044570.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family RVP_2 PF08284.11 gi|313122644|ref|YP_004044571.1| - 0.089 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Retroviral aspartyl protease DDE_Tnp_1 PF01609.21 gi|313122645|ref|YP_004044572.1| - 1.5e-07 31.3 3.0 7.3e-07 29.0 3.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|313122645|ref|YP_004044572.1| - 0.00077 19.8 0.9 0.0015 18.8 0.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|313122645|ref|YP_004044572.1| - 0.0037 17.3 0.0 0.0045 17.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|313122645|ref|YP_004044572.1| - 0.059 13.6 0.1 0.069 13.4 0.1 1.2 1 0 0 1 1 1 0 Transposase DDE domain Orai-1 PF07856.12 gi|313122646|ref|YP_004044573.1| - 0.015 15.0 3.0 0.019 14.7 3.0 1.3 1 1 0 1 1 1 0 Mediator of CRAC channel activity Prominin PF05478.11 gi|313122646|ref|YP_004044573.1| - 0.026 12.5 2.9 0.026 12.5 2.9 1.0 1 0 0 1 1 1 0 Prominin MFS_1 PF07690.16 gi|313122646|ref|YP_004044573.1| - 0.13 11.1 6.9 0.16 10.9 6.9 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily Promethin PF16015.5 gi|313122646|ref|YP_004044573.1| - 0.15 12.0 7.5 0.18 11.7 7.5 1.2 1 0 0 1 1 1 0 Promethin YtpI PF14007.6 gi|313122646|ref|YP_004044573.1| - 0.2 11.8 5.9 0.077 13.1 3.0 1.7 1 1 0 1 1 1 0 YtpI-like protein Tom6 PF17112.5 gi|313122646|ref|YP_004044573.1| - 0.73 9.4 4.5 0.78 9.3 2.4 2.0 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal ABC2_membrane_2 PF12679.7 gi|313122647|ref|YP_004044574.1| - 1.1e-30 106.9 38.7 4.6e-18 65.5 13.6 3.6 2 2 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313122647|ref|YP_004044574.1| - 9.2e-10 38.1 40.1 6.8e-06 25.4 12.3 2.4 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|313122648|ref|YP_004044575.1| - 2.1e-25 89.8 0.0 3.3e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122648|ref|YP_004044575.1| - 6.2e-12 45.9 0.0 1.4e-07 31.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313122648|ref|YP_004044575.1| - 3.2e-05 24.6 0.0 7.5e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|313122648|ref|YP_004044575.1| - 0.0038 16.9 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313122648|ref|YP_004044575.1| - 0.027 15.0 0.0 0.043 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122648|ref|YP_004044575.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|313122648|ref|YP_004044575.1| - 0.13 12.2 0.2 0.77 9.8 0.0 2.1 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter SRP54 PF00448.22 gi|313122648|ref|YP_004044575.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|313122648|ref|YP_004044575.1| - 0.13 11.6 0.0 3.9 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|313122648|ref|YP_004044575.1| - 0.21 11.1 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region CLP1_P PF16575.5 gi|313122648|ref|YP_004044575.1| - 0.21 11.4 0.1 0.43 10.4 0.0 1.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DDE_Tnp_1 PF01609.21 gi|313122651|ref|YP_004044578.1| - 3.5e-05 23.5 0.0 4.1e-05 23.3 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain AAA_31 PF13614.6 gi|313122652|ref|YP_004044579.1| - 1.9e-19 70.2 0.0 3.3e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313122652|ref|YP_004044579.1| - 2.4e-11 43.8 0.0 4e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|313122652|ref|YP_004044579.1| - 8.3e-05 22.0 0.0 0.0011 18.3 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|313122652|ref|YP_004044579.1| - 8.9e-05 22.1 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|313122652|ref|YP_004044579.1| - 0.00024 20.4 0.0 0.00039 19.7 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|313122652|ref|YP_004044579.1| - 0.00047 19.7 0.1 0.0043 16.6 0.1 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|313122652|ref|YP_004044579.1| - 0.045 13.2 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Pex14_N PF04695.13 gi|313122653|ref|YP_004044580.1| - 0.0066 17.1 2.0 0.0077 16.9 2.0 1.2 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF3801 PF12687.7 gi|313122653|ref|YP_004044580.1| - 0.086 12.9 5.3 0.1 12.6 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) XAP5 PF04921.14 gi|313122653|ref|YP_004044580.1| - 0.12 12.2 5.8 0.15 11.9 5.8 1.2 1 0 0 1 1 1 0 XAP5, circadian clock regulator DUF515 PF04415.12 gi|313122653|ref|YP_004044580.1| - 0.55 8.6 2.4 0.57 8.5 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Presenilin PF01080.17 gi|313122653|ref|YP_004044580.1| - 8.3 5.1 5.2 8.9 5.0 5.2 1.1 1 0 0 1 1 1 0 Presenilin NrsF PF06532.11 gi|313122654|ref|YP_004044581.1| - 0.033 13.9 0.6 0.033 13.9 0.6 2.3 1 1 1 2 2 2 0 Negative regulator of sigma F PRA1 PF03208.19 gi|313122654|ref|YP_004044581.1| - 0.15 11.7 2.1 0.21 11.2 2.1 1.3 1 0 0 1 1 1 0 PRA1 family protein DUF4199 PF13858.6 gi|313122654|ref|YP_004044581.1| - 0.27 11.6 6.7 0.098 13.1 2.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) TraL PF07178.11 gi|313122654|ref|YP_004044581.1| - 4.9 7.7 5.8 1.6 9.2 0.1 2.2 1 1 1 2 2 2 0 TraL protein DUF202 PF02656.15 gi|313122654|ref|YP_004044581.1| - 9.5 6.7 14.4 1.2e+02 3.2 14.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Rick_17kDa_Anti PF05433.15 gi|313122655|ref|YP_004044582.1| - 0.051 13.4 11.8 0.14 12.1 11.8 1.7 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|313122655|ref|YP_004044582.1| - 0.78 9.5 12.4 2.5 7.9 12.4 1.8 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|313122655|ref|YP_004044582.1| - 0.8 9.8 14.0 2.3 8.3 14.0 1.8 1 0 0 1 1 1 0 Glycine zipper Gpi16 PF04113.14 gi|313122658|ref|YP_004044585.1| - 0.14 10.6 0.7 0.13 10.7 0.7 1.0 1 0 0 1 1 1 0 Gpi16 subunit, GPI transamidase component DoxX PF07681.12 gi|313122659|ref|YP_004044586.1| - 3.5e-11 43.5 10.7 3.5e-11 43.5 10.7 1.7 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|313122659|ref|YP_004044586.1| - 0.0033 17.6 1.4 0.0085 16.3 0.3 1.8 1 1 1 2 2 2 1 HR-like lesion-inducing Fe-ADH PF00465.19 gi|313122660|ref|YP_004044587.1| - 1.6e-62 211.4 0.5 1.9e-62 211.2 0.5 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|313122660|ref|YP_004044587.1| - 6.9e-15 55.4 0.3 1.4e-08 34.7 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase dbPDZ_assoc PF16610.5 gi|313122660|ref|YP_004044587.1| - 0.11 12.7 0.0 36 4.7 0.0 3.1 2 1 1 3 3 3 0 Unstructured region between two PDZ domains on Dlg5 MAAL_C PF07476.11 gi|313122661|ref|YP_004044588.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Isochorismatase PF00857.20 gi|313122662|ref|YP_004044589.1| - 3.4e-29 102.2 0.2 9e-29 100.9 0.2 1.7 1 1 0 1 1 1 1 Isochorismatase family TK PF00265.18 gi|313122662|ref|YP_004044589.1| - 0.078 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Thymidine kinase zf-CDGSH PF09360.10 gi|313122663|ref|YP_004044590.1| - 3.1e-29 100.9 6.7 4.6e-15 55.6 0.1 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|313122663|ref|YP_004044590.1| - 2.5e-24 85.1 0.0 5.1e-24 84.1 0.0 1.6 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.6 gi|313122663|ref|YP_004044590.1| - 0.045 14.3 0.5 0.17 12.4 0.2 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|313122663|ref|YP_004044590.1| - 1.2 9.4 6.1 0.45 10.7 0.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Isochorismatase PF00857.20 gi|313122664|ref|YP_004044591.1| - 5.3e-24 85.3 0.0 9.9e-24 84.5 0.0 1.4 1 1 0 1 1 1 1 Isochorismatase family HxlR PF01638.17 gi|313122665|ref|YP_004044592.1| - 3.8e-20 71.5 0.0 4.7e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|313122665|ref|YP_004044592.1| - 3.5e-05 23.9 0.0 5.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|313122665|ref|YP_004044592.1| - 9.8e-05 22.2 0.1 0.00016 21.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|313122665|ref|YP_004044592.1| - 0.00017 22.0 0.1 0.00027 21.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|313122665|ref|YP_004044592.1| - 0.0032 17.3 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Connexin50 PF03509.14 gi|313122665|ref|YP_004044592.1| - 0.0077 17.0 0.0 0.02 15.7 0.0 1.7 1 0 0 1 1 1 1 Gap junction alpha-8 protein (Cx50) MarR PF01047.22 gi|313122665|ref|YP_004044592.1| - 0.012 15.5 0.1 0.022 14.7 0.1 1.5 1 1 0 1 1 1 0 MarR family TrmB PF01978.19 gi|313122665|ref|YP_004044592.1| - 0.016 15.1 0.1 0.027 14.3 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|313122665|ref|YP_004044592.1| - 0.02 14.8 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_43 PF09904.9 gi|313122665|ref|YP_004044592.1| - 0.034 14.1 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Replic_Relax PF13814.6 gi|313122665|ref|YP_004044592.1| - 0.048 13.7 0.0 0.06 13.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation TnsD PF15978.5 gi|313122665|ref|YP_004044592.1| - 0.053 12.5 0.1 0.064 12.2 0.1 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D Trp_repressor PF01371.19 gi|313122665|ref|YP_004044592.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein DUF4364 PF14277.6 gi|313122665|ref|YP_004044592.1| - 0.17 11.6 0.0 0.35 10.6 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Glyoxalase PF00903.25 gi|313122666|ref|YP_004044593.1| - 1.6e-11 44.5 0.4 2.2e-11 44.1 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313122666|ref|YP_004044593.1| - 8.3e-07 29.3 0.0 1.5e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|313122667|ref|YP_004044594.1| - 1.6e-32 112.4 1.3 1.6e-17 63.9 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313122667|ref|YP_004044594.1| - 0.0015 18.8 0.2 1.2 9.5 0.0 3.3 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HicA_toxin PF07927.12 gi|313122667|ref|YP_004044594.1| - 0.019 15.0 0.0 0.049 13.7 0.0 1.7 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Glyoxalase_2 PF12681.7 gi|313122667|ref|YP_004044594.1| - 0.049 13.6 0.0 0.5 10.3 0.0 2.1 1 1 0 1 1 1 0 Glyoxalase-like domain Abhydrolase_2 PF02230.16 gi|313122668|ref|YP_004044595.1| - 1.7e-22 80.3 0.0 1.3e-21 77.5 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|313122668|ref|YP_004044595.1| - 2.6e-09 36.7 0.8 0.017 14.4 0.0 3.0 2 1 1 3 3 3 3 Serine aminopeptidase, S33 DLH PF01738.18 gi|313122668|ref|YP_004044595.1| - 9.4e-06 25.3 0.0 1.3e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|313122668|ref|YP_004044595.1| - 0.0012 18.6 0.1 0.0043 16.7 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313122668|ref|YP_004044595.1| - 0.0021 18.7 6.7 0.0071 17.0 6.6 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family LIP PF03583.14 gi|313122668|ref|YP_004044595.1| - 0.039 13.3 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Secretory lipase Palm_thioest PF02089.15 gi|313122668|ref|YP_004044595.1| - 0.041 13.7 0.0 0.047 13.5 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase NUDIX-like PF09296.11 gi|313122668|ref|YP_004044595.1| - 0.11 13.2 0.0 0.84 10.3 0.0 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain FSH1 PF03959.13 gi|313122668|ref|YP_004044595.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) CoA_binding_2 PF13380.6 gi|313122669|ref|YP_004044596.1| - 9.2e-39 132.5 0.4 1.1e-38 132.3 0.4 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|313122669|ref|YP_004044596.1| - 1.7e-05 25.4 0.0 2.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain Adhesin_P1_N PF18652.1 gi|313122669|ref|YP_004044596.1| - 0.073 13.1 0.6 0.13 12.3 0.6 1.3 1 0 0 1 1 1 0 Adhesin P1 N-terminal domain PGM_PMM_II PF02879.16 gi|313122669|ref|YP_004044596.1| - 0.11 13.2 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Eno-Rase_NADH_b PF12242.8 gi|313122669|ref|YP_004044596.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Thiamine_BP PF01910.17 gi|313122670|ref|YP_004044597.1| - 4.7e-21 74.5 0.4 5.4e-21 74.3 0.4 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Usp PF00582.26 gi|313122671|ref|YP_004044598.1| - 8.7e-62 207.8 2.3 4.1e-33 114.9 0.5 2.0 2 0 0 2 2 2 2 Universal stress protein family MGS PF02142.22 gi|313122671|ref|YP_004044598.1| - 0.0013 18.9 0.1 0.004 17.3 0.0 1.9 2 0 0 2 2 2 1 MGS-like domain AA_permease_2 PF13520.6 gi|313122673|ref|YP_004044600.1| - 5e-33 114.6 41.3 6.6e-33 114.2 41.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|313122673|ref|YP_004044600.1| - 2.6e-21 75.8 33.4 3.7e-21 75.3 33.4 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|313122673|ref|YP_004044600.1| - 2.1e-05 25.1 1.0 0.032 14.7 0.1 2.3 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|313122673|ref|YP_004044600.1| - 0.00014 21.8 5.4 0.00014 21.8 5.4 2.5 2 0 0 2 2 2 1 C-terminus of AA_permease ArsP_1 PF03773.13 gi|313122674|ref|YP_004044601.1| - 1e-72 244.8 12.8 1.3e-72 244.4 12.8 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|313122674|ref|YP_004044601.1| - 2.1e-06 27.7 0.1 4.1e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|313122674|ref|YP_004044601.1| - 0.019 14.9 0.3 0.035 14.1 0.3 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|313122674|ref|YP_004044601.1| - 0.03 14.3 0.1 0.03 14.3 0.1 2.7 4 0 0 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Halogen_Hydrol PF10112.9 gi|313122674|ref|YP_004044601.1| - 8.2 6.4 7.9 8 6.4 0.0 2.7 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein NAPRTase_N PF17767.1 gi|313122675|ref|YP_004044602.1| - 2.2e-17 63.6 0.1 9.6e-17 61.5 0.0 2.0 2 0 0 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase PF04095.16 gi|313122675|ref|YP_004044602.1| - 1.2e-11 44.6 0.0 2.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_C PF17956.1 gi|313122675|ref|YP_004044602.1| - 1.9e-10 41.1 0.1 9.2e-10 38.9 0.0 1.8 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|313122676|ref|YP_004044603.1| - 0.016 15.6 0.0 0.026 14.9 0.0 1.4 2 0 0 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Na_Pi_cotrans PF02690.15 gi|313122677|ref|YP_004044604.1| - 1.1e-15 58.0 15.7 1.8e-09 37.8 4.4 2.4 2 0 0 2 2 2 2 Na+/Pi-cotransporter DUF1270 PF06900.11 gi|313122677|ref|YP_004044604.1| - 0.1 13.0 0.1 0.1 13.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) Usp PF00582.26 gi|313122678|ref|YP_004044605.1| - 3.5e-23 82.7 3.0 4e-23 82.5 3.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|313122678|ref|YP_004044605.1| - 0.0027 17.2 0.2 0.014 14.8 0.1 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel VWA PF00092.28 gi|313122678|ref|YP_004044605.1| - 0.012 15.8 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain YflT PF11181.8 gi|313122678|ref|YP_004044605.1| - 0.029 14.9 0.0 0.041 14.4 0.0 1.2 1 0 0 1 1 1 0 Heat induced stress protein YflT SPO22 PF08631.10 gi|313122678|ref|YP_004044605.1| - 0.036 13.6 0.1 0.045 13.2 0.1 1.1 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like CTP_transf_like PF01467.26 gi|313122679|ref|YP_004044606.1| - 1.9e-06 28.1 1.2 8.9e-06 25.9 1.2 1.9 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|313122679|ref|YP_004044606.1| - 0.049 13.5 0.6 0.13 12.1 0.5 1.8 2 1 0 2 2 2 0 FAD synthetase VanZ PF04892.12 gi|313122680|ref|YP_004044607.1| - 0.00028 21.5 0.0 0.00033 21.3 0.0 1.3 1 1 0 1 1 1 1 VanZ like family DUF2279 PF10043.9 gi|313122680|ref|YP_004044607.1| - 0.03 15.1 0.0 0.046 14.5 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) Tmem26 PF09772.9 gi|313122680|ref|YP_004044607.1| - 0.12 11.7 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 26 SNARE PF05739.19 gi|313122680|ref|YP_004044607.1| - 0.17 11.9 0.1 0.33 11.0 0.1 1.5 1 0 0 1 1 1 0 SNARE domain Cdc6_C PF09079.11 gi|313122681|ref|YP_004044608.1| - 1.9e-18 66.2 0.2 4.3e-18 65.1 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313122681|ref|YP_004044608.1| - 1.8e-16 60.6 0.3 6.1e-16 58.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313122681|ref|YP_004044608.1| - 6.8e-08 33.1 0.3 6.8e-08 33.1 0.3 2.5 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|313122681|ref|YP_004044608.1| - 4.6e-06 27.1 0.2 1.9e-05 25.1 0.0 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|313122681|ref|YP_004044608.1| - 3.8e-05 23.2 0.0 7.9e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|313122681|ref|YP_004044608.1| - 7.7e-05 22.7 0.1 0.00026 20.9 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|313122681|ref|YP_004044608.1| - 0.00017 21.3 0.1 0.00043 20.0 0.1 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|313122681|ref|YP_004044608.1| - 0.00034 20.6 1.0 0.0033 17.4 0.8 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|313122681|ref|YP_004044608.1| - 0.00083 18.9 0.4 0.08 12.4 0.1 2.3 2 0 0 2 2 2 1 PhoH-like protein DUF87 PF01935.17 gi|313122681|ref|YP_004044608.1| - 0.0028 17.8 1.9 0.011 15.9 0.1 2.5 2 1 1 3 3 3 1 Helicase HerA, central domain ResIII PF04851.15 gi|313122681|ref|YP_004044608.1| - 0.0029 17.7 0.0 0.0061 16.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Kinesin PF00225.23 gi|313122681|ref|YP_004044608.1| - 0.0032 16.4 0.0 0.0089 15.0 0.0 1.7 2 0 0 2 2 2 1 Kinesin motor domain DEAD PF00270.29 gi|313122681|ref|YP_004044608.1| - 0.0037 17.1 2.5 1.5 8.5 2.5 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|313122681|ref|YP_004044608.1| - 0.0058 17.1 0.5 0.021 15.3 0.0 2.1 2 1 0 2 2 2 1 ABC transporter Zeta_toxin PF06414.12 gi|313122681|ref|YP_004044608.1| - 0.008 15.5 0.0 0.019 14.3 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_32 PF13654.6 gi|313122681|ref|YP_004044608.1| - 0.0094 14.8 0.7 0.73 8.5 0.4 2.2 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|313122681|ref|YP_004044608.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_2 PF07724.14 gi|313122681|ref|YP_004044608.1| - 0.013 15.6 0.1 0.04 14.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) NB-ARC PF00931.22 gi|313122681|ref|YP_004044608.1| - 0.017 14.3 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|313122681|ref|YP_004044608.1| - 0.027 13.9 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SWI2_SNF2 PF18766.1 gi|313122681|ref|YP_004044608.1| - 0.039 13.6 0.4 0.082 12.6 0.0 1.7 2 0 0 2 2 2 0 SWI2/SNF2 ATPase P-II PF00543.22 gi|313122681|ref|YP_004044608.1| - 0.064 13.9 0.2 0.7 10.5 0.0 2.6 2 1 0 2 2 2 0 Nitrogen regulatory protein P-II AAA_assoc_2 PF16193.5 gi|313122681|ref|YP_004044608.1| - 0.081 13.3 0.4 0.24 11.8 0.4 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Microtub_bd PF16796.5 gi|313122681|ref|YP_004044608.1| - 0.087 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding ATP-synt_ab PF00006.25 gi|313122681|ref|YP_004044608.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|313122681|ref|YP_004044608.1| - 0.12 11.8 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|313122681|ref|YP_004044608.1| - 0.13 12.6 0.1 0.46 10.9 0.1 2.0 1 1 0 1 1 1 0 RNA helicase DUF4252 PF14060.6 gi|313122681|ref|YP_004044608.1| - 0.19 11.6 0.7 4.7 7.1 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4252) fn3 PF00041.21 gi|313122682|ref|YP_004044609.1| - 1.4e-21 76.6 28.1 1.2e-10 41.6 3.2 6.1 7 0 0 7 7 7 3 Fibronectin type III domain DUF4998 PF16389.5 gi|313122682|ref|YP_004044609.1| - 0.0056 16.3 1.0 1.9 8.0 0.0 3.0 3 0 0 3 3 3 2 Domain of unknown function CP2 PF04516.15 gi|313122682|ref|YP_004044609.1| - 0.075 12.3 0.7 3.5 6.8 0.0 3.0 3 0 0 3 3 3 0 CP2 transcription factor DUF677 PF05055.12 gi|313122685|ref|YP_004044612.1| - 0.27 10.1 0.0 0.27 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) MarR_2 PF12802.7 gi|313122687|ref|YP_004044614.1| - 0.00072 19.4 0.2 0.00089 19.1 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313122687|ref|YP_004044614.1| - 0.0014 18.2 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|313122687|ref|YP_004044614.1| - 0.0042 16.7 0.1 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|313122687|ref|YP_004044614.1| - 0.0047 16.9 0.0 0.027 14.4 0.0 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313122687|ref|YP_004044614.1| - 0.013 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|313122687|ref|YP_004044614.1| - 0.032 14.3 0.1 0.06 13.5 0.1 1.5 1 0 0 1 1 1 0 DprA winged helix domain Rrf2 PF02082.20 gi|313122687|ref|YP_004044614.1| - 0.058 13.7 0.0 0.078 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|313122687|ref|YP_004044614.1| - 0.064 13.2 0.0 0.099 12.6 0.0 1.3 1 1 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|313122687|ref|YP_004044614.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_43 PF09904.9 gi|313122687|ref|YP_004044614.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Spem1 PF15670.5 gi|313122688|ref|YP_004044615.1| - 0.053 13.1 0.8 0.053 13.1 0.8 1.0 1 0 0 1 1 1 0 Spermatid maturation protein 1 CENP-F_leu_zip PF10473.9 gi|313122689|ref|YP_004044616.1| - 4.4e-06 26.8 4.4 4.4e-06 26.8 4.4 2.2 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 XhlA PF10779.9 gi|313122689|ref|YP_004044616.1| - 9.4e-05 22.5 1.9 9.4e-05 22.5 1.9 3.0 3 1 1 4 4 3 1 Haemolysin XhlA CLZ PF16526.5 gi|313122689|ref|YP_004044616.1| - 0.00036 20.8 3.6 0.00078 19.8 0.9 2.6 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spectrin PF00435.21 gi|313122689|ref|YP_004044616.1| - 0.00043 20.7 3.9 0.45 11.0 0.4 2.9 2 0 0 2 2 2 2 Spectrin repeat FlaC_arch PF05377.11 gi|313122689|ref|YP_004044616.1| - 0.0017 18.7 0.6 0.0017 18.7 0.6 3.0 3 1 0 3 3 2 1 Flagella accessory protein C (FlaC) FPP PF05911.11 gi|313122689|ref|YP_004044616.1| - 0.002 16.4 1.3 0.002 16.4 1.3 1.8 2 0 0 2 2 2 1 Filament-like plant protein, long coiled-coil APG6_N PF17675.1 gi|313122689|ref|YP_004044616.1| - 0.0026 18.3 3.9 0.0026 18.3 3.9 2.0 2 0 0 2 2 2 1 Apg6 coiled-coil region PI3K_P85_iSH2 PF16454.5 gi|313122689|ref|YP_004044616.1| - 0.003 17.2 4.7 0.014 15.0 0.6 2.3 2 0 0 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ATG16 PF08614.11 gi|313122689|ref|YP_004044616.1| - 0.0032 17.7 1.2 0.0032 17.7 1.2 2.3 3 0 0 3 3 2 1 Autophagy protein 16 (ATG16) Snapin_Pallidin PF14712.6 gi|313122689|ref|YP_004044616.1| - 0.0033 17.8 4.2 0.014 15.8 0.6 2.6 2 0 0 2 2 2 1 Snapin/Pallidin Nnf1 PF03980.14 gi|313122689|ref|YP_004044616.1| - 0.0061 16.9 1.5 0.049 14.0 0.5 2.5 2 0 0 2 2 2 1 Nnf1 DHR10 PF18595.1 gi|313122689|ref|YP_004044616.1| - 0.0063 16.6 4.1 0.0063 16.6 4.1 3.1 3 0 0 3 3 3 1 Designed helical repeat protein 10 domain HALZ PF02183.18 gi|313122689|ref|YP_004044616.1| - 0.0076 16.5 4.0 0.0076 16.5 4.0 2.7 2 1 1 3 3 2 1 Homeobox associated leucine zipper UPF0242 PF06785.11 gi|313122689|ref|YP_004044616.1| - 0.0076 16.4 1.9 0.0076 16.4 1.9 1.7 2 0 0 2 2 1 1 Uncharacterised protein family (UPF0242) N-terminus TSC22 PF01166.18 gi|313122689|ref|YP_004044616.1| - 0.0086 16.4 3.5 4.1 7.8 2.4 3.0 1 1 1 2 2 2 0 TSC-22/dip/bun family BLOC1_2 PF10046.9 gi|313122689|ref|YP_004044616.1| - 0.0091 16.3 7.3 0.025 14.9 0.8 2.9 3 0 0 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2746 PF10874.8 gi|313122689|ref|YP_004044616.1| - 0.013 16.0 0.5 0.013 16.0 0.5 2.2 2 1 1 3 3 1 0 Protein of unknown function (DUF2746) bZIP_1 PF00170.21 gi|313122689|ref|YP_004044616.1| - 0.013 15.5 2.8 0.041 14.0 2.8 1.9 1 0 0 1 1 1 0 bZIP transcription factor TPR_MLP1_2 PF07926.12 gi|313122689|ref|YP_004044616.1| - 0.019 15.0 1.8 0.019 15.0 1.8 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF1192 PF06698.11 gi|313122689|ref|YP_004044616.1| - 0.022 14.8 1.4 0.022 14.8 1.4 2.3 2 0 0 2 2 1 0 Protein of unknown function (DUF1192) COG5 PF10392.9 gi|313122689|ref|YP_004044616.1| - 0.024 14.8 4.8 0.069 13.3 0.2 2.7 3 1 0 3 3 2 0 Golgi transport complex subunit 5 CENP-Q PF13094.6 gi|313122689|ref|YP_004044616.1| - 0.024 14.8 3.6 0.024 14.8 3.6 2.2 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Spc24 PF08286.11 gi|313122689|ref|YP_004044616.1| - 0.029 14.6 1.1 0.029 14.6 1.1 2.3 3 0 0 3 3 2 0 Spc24 subunit of Ndc80 SlyX PF04102.12 gi|313122689|ref|YP_004044616.1| - 0.034 14.8 5.5 0.17 12.5 1.9 2.8 2 0 0 2 2 2 0 SlyX DUF4472 PF14739.6 gi|313122689|ref|YP_004044616.1| - 0.043 14.6 3.4 0.045 14.5 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4472) Prefoldin_2 PF01920.20 gi|313122689|ref|YP_004044616.1| - 0.049 13.6 0.8 0.049 13.6 0.8 3.1 3 1 0 3 3 3 0 Prefoldin subunit GAS PF13851.6 gi|313122689|ref|YP_004044616.1| - 0.051 12.9 4.0 0.25 10.7 1.0 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding bZIP_2 PF07716.15 gi|313122689|ref|YP_004044616.1| - 0.066 13.3 0.9 0.066 13.3 0.9 3.2 2 1 1 3 3 3 0 Basic region leucine zipper TMF_TATA_bd PF12325.8 gi|313122689|ref|YP_004044616.1| - 0.072 13.3 8.0 0.053 13.7 3.2 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding KASH_CCD PF14662.6 gi|313122689|ref|YP_004044616.1| - 0.074 12.9 7.2 0.042 13.7 2.1 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF1664 PF07889.12 gi|313122689|ref|YP_004044616.1| - 0.13 12.3 5.9 0.55 10.3 0.1 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|313122689|ref|YP_004044616.1| - 0.14 11.5 4.5 0.15 11.4 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|313122689|ref|YP_004044616.1| - 0.14 12.6 5.2 0.24 11.9 5.2 1.6 1 1 0 1 1 1 0 Fez1 NPV_P10 PF05531.12 gi|313122689|ref|YP_004044616.1| - 0.16 12.5 0.2 0.16 12.5 0.2 3.6 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein Fmp27_WPPW PF10359.9 gi|313122689|ref|YP_004044616.1| - 0.23 10.3 7.4 0.33 9.8 5.1 1.9 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain ADIP PF11559.8 gi|313122689|ref|YP_004044616.1| - 0.25 11.4 6.2 0.1 12.7 1.1 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Phage_GP20 PF06810.11 gi|313122689|ref|YP_004044616.1| - 0.27 11.0 6.8 0.14 12.0 1.2 2.5 2 1 0 2 2 2 0 Phage minor structural protein GP20 FlxA PF14282.6 gi|313122689|ref|YP_004044616.1| - 0.3 11.1 5.5 1.7 8.7 0.2 2.8 3 0 0 3 3 2 0 FlxA-like protein UPF0184 PF03670.13 gi|313122689|ref|YP_004044616.1| - 0.31 11.5 6.4 0.16 12.4 2.0 2.6 3 0 0 3 3 2 0 Uncharacterised protein family (UPF0184) DUF2968 PF11180.8 gi|313122689|ref|YP_004044616.1| - 0.31 10.6 4.0 0.17 11.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF2205 PF10224.9 gi|313122689|ref|YP_004044616.1| - 0.33 11.0 6.4 0.9 9.6 1.9 3.1 2 1 1 3 3 2 0 Short coiled-coil protein HDV_ag PF01517.18 gi|313122689|ref|YP_004044616.1| - 0.37 10.6 2.7 0.89 9.3 0.2 2.2 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen Spc7 PF08317.11 gi|313122689|ref|YP_004044616.1| - 0.43 9.4 9.0 1.3 7.8 9.0 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|313122689|ref|YP_004044616.1| - 0.45 10.7 3.9 3 8.0 0.1 2.8 3 0 0 3 3 2 0 Fibrinogen alpha/beta chain family Wbp11 PF09429.10 gi|313122689|ref|YP_004044616.1| - 0.45 10.9 13.3 2.5 8.6 0.1 3.3 3 0 0 3 3 3 0 WW domain binding protein 11 DUF4618 PF15397.6 gi|313122689|ref|YP_004044616.1| - 0.46 9.9 5.8 0.24 10.8 0.3 2.4 3 0 0 3 3 2 0 Domain of unknown function (DUF4618) DUF3450 PF11932.8 gi|313122689|ref|YP_004044616.1| - 0.62 9.3 9.7 0.07 12.4 0.8 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|313122689|ref|YP_004044616.1| - 0.78 10.2 9.7 0.046 14.2 2.5 2.5 3 0 0 3 3 2 0 Cell division protein ZapB TraF_2 PF13729.6 gi|313122689|ref|YP_004044616.1| - 0.8 9.0 7.8 1.5 8.2 4.5 2.4 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF16 PF01519.16 gi|313122689|ref|YP_004044616.1| - 0.82 10.2 4.3 1 9.8 0.0 2.7 3 1 0 3 3 2 0 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|313122689|ref|YP_004044616.1| - 0.83 9.7 4.5 2.7 8.0 0.5 2.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4795 PF16043.5 gi|313122689|ref|YP_004044616.1| - 0.93 9.1 6.6 2.6 7.6 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) HSBP1 PF06825.12 gi|313122689|ref|YP_004044616.1| - 1.1 9.2 5.7 0.69 9.8 1.1 2.8 1 1 1 2 2 2 0 Heat shock factor binding protein 1 TMF_DNA_bd PF12329.8 gi|313122689|ref|YP_004044616.1| - 1.4 9.0 7.8 0.88 9.6 2.0 2.8 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding CENP-H PF05837.12 gi|313122689|ref|YP_004044616.1| - 1.5 9.2 8.4 0.48 10.9 0.5 2.9 3 0 0 3 3 3 0 Centromere protein H (CENP-H) YabA PF06156.13 gi|313122689|ref|YP_004044616.1| - 2.5 8.8 6.7 9.9 6.9 4.2 2.6 2 1 0 2 2 1 0 Initiation control protein YabA DivIVA PF05103.13 gi|313122689|ref|YP_004044616.1| - 2.6 8.1 6.7 1.2 9.2 0.9 2.6 3 0 0 3 3 2 0 DivIVA protein End3 PF12761.7 gi|313122689|ref|YP_004044616.1| - 2.9 8.0 11.7 2.6 8.2 0.4 2.7 3 0 0 3 3 2 0 Actin cytoskeleton-regulatory complex protein END3 DMPK_coil PF08826.10 gi|313122689|ref|YP_004044616.1| - 2.9 8.1 11.7 0.95 9.6 3.4 3.0 3 0 0 3 3 2 0 DMPK coiled coil domain like DUF4164 PF13747.6 gi|313122689|ref|YP_004044616.1| - 3.8 7.8 16.3 0.15 12.4 6.7 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4164) DivIC PF04977.15 gi|313122689|ref|YP_004044616.1| - 4.3 7.2 14.5 2.5 7.9 3.2 3.4 3 1 1 4 4 4 0 Septum formation initiator Geminin PF07412.12 gi|313122689|ref|YP_004044616.1| - 5.4 6.7 11.4 0.076 12.8 3.3 2.0 3 0 0 3 3 1 0 Geminin DASH_Dam1 PF08653.10 gi|313122689|ref|YP_004044616.1| - 7.5 6.4 5.4 5.2 6.9 0.8 3.0 3 1 1 4 4 2 0 DASH complex subunit Dam1 Pox_A_type_inc PF04508.12 gi|313122689|ref|YP_004044616.1| - 7.9 6.5 8.6 26 4.9 2.2 3.6 3 1 1 4 4 4 0 Viral A-type inclusion protein repeat PCNA_N PF00705.18 gi|313122690|ref|YP_004044617.1| - 6.6e-06 25.9 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|313122690|ref|YP_004044617.1| - 0.065 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.12 gi|313122690|ref|YP_004044617.1| - 0.083 12.0 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Hus1-like protein TusA PF01206.17 gi|313122690|ref|YP_004044617.1| - 0.085 12.7 0.1 1.9 8.4 0.0 2.4 2 0 0 2 2 2 0 Sulfurtransferase TusA DUF2218 PF09981.9 gi|313122690|ref|YP_004044617.1| - 0.2 12.1 0.4 1.5 9.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) AAA_22 PF13401.6 gi|313122692|ref|YP_004044619.1| - 1.2e-11 45.0 0.0 2.4e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|313122692|ref|YP_004044619.1| - 7e-08 32.4 0.2 3.9e-07 30.0 0.1 2.4 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|313122692|ref|YP_004044619.1| - 1.3e-07 32.1 5.7 1.9e-07 31.6 3.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|313122692|ref|YP_004044619.1| - 4.3e-05 23.3 0.1 8.7e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|313122692|ref|YP_004044619.1| - 6.1e-05 23.4 0.6 0.00016 22.1 0.6 1.7 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|313122692|ref|YP_004044619.1| - 0.0022 17.4 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA_5 PF07728.14 gi|313122692|ref|YP_004044619.1| - 0.0042 17.1 0.0 0.0097 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|313122692|ref|YP_004044619.1| - 0.0057 16.2 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DEAD PF00270.29 gi|313122692|ref|YP_004044619.1| - 0.0061 16.4 0.3 0.66 9.7 0.0 2.2 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA PF00004.29 gi|313122692|ref|YP_004044619.1| - 0.0061 17.0 0.0 0.018 15.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|313122692|ref|YP_004044619.1| - 0.0063 17.1 0.0 0.019 15.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|313122692|ref|YP_004044619.1| - 0.012 14.9 0.0 0.025 13.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|313122692|ref|YP_004044619.1| - 0.013 15.8 1.3 0.019 15.3 0.2 1.8 2 0 0 2 2 1 0 AAA C-terminal domain DUF815 PF05673.13 gi|313122692|ref|YP_004044619.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|313122692|ref|YP_004044619.1| - 0.019 14.0 0.0 0.032 13.3 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|313122692|ref|YP_004044619.1| - 0.027 14.4 0.0 0.8 9.6 0.0 2.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|313122692|ref|YP_004044619.1| - 0.064 13.1 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_14 PF13173.6 gi|313122692|ref|YP_004044619.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|313122692|ref|YP_004044619.1| - 0.091 12.8 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|313122692|ref|YP_004044619.1| - 0.11 12.2 0.2 0.29 10.9 0.0 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain Penicillinase_R PF03965.16 gi|313122692|ref|YP_004044619.1| - 0.15 12.4 0.1 0.44 10.9 0.0 1.8 2 0 0 2 2 1 0 Penicillinase repressor Cdc6_C PF09079.11 gi|313122695|ref|YP_004044622.1| - 1.9e-16 59.8 0.5 5.6e-16 58.3 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313122695|ref|YP_004044622.1| - 5.6e-14 52.6 0.0 1.5e-13 51.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313122695|ref|YP_004044622.1| - 4.8e-11 43.3 3.3 1.6e-08 35.1 3.3 3.2 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|313122695|ref|YP_004044622.1| - 6.5e-06 26.6 0.0 2.1e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|313122695|ref|YP_004044622.1| - 1.2e-05 25.3 0.0 2.7e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|313122695|ref|YP_004044622.1| - 3.2e-05 24.0 0.1 8.6e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|313122695|ref|YP_004044622.1| - 0.00024 20.6 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein DEAD PF00270.29 gi|313122695|ref|YP_004044622.1| - 0.00025 20.9 0.3 0.36 10.6 0.0 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase NB-ARC PF00931.22 gi|313122695|ref|YP_004044622.1| - 0.00085 18.6 0.0 0.0022 17.2 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_32 PF13654.6 gi|313122695|ref|YP_004044622.1| - 0.0012 17.7 0.2 0.46 9.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain DUF815 PF05673.13 gi|313122695|ref|YP_004044622.1| - 0.0012 18.0 0.0 0.0022 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|313122695|ref|YP_004044622.1| - 0.0029 17.1 0.0 0.044 13.3 0.0 2.6 3 0 0 3 3 3 1 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|313122695|ref|YP_004044622.1| - 0.0093 15.2 2.3 0.21 10.8 0.0 2.8 2 1 1 3 3 3 1 KAP family P-loop domain RNA_helicase PF00910.22 gi|313122695|ref|YP_004044622.1| - 0.0097 16.3 0.0 0.026 14.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.6 gi|313122695|ref|YP_004044622.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|313122695|ref|YP_004044622.1| - 0.012 14.6 0.0 0.034 13.2 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|313122695|ref|YP_004044622.1| - 0.015 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|313122695|ref|YP_004044622.1| - 0.016 15.3 3.0 1.6 8.8 0.1 3.2 2 2 1 3 3 3 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|313122695|ref|YP_004044622.1| - 0.02 14.2 0.0 0.051 12.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|313122695|ref|YP_004044622.1| - 0.031 14.8 0.0 0.13 12.9 0.0 2.1 3 0 0 3 3 1 0 AAA domain AAA_5 PF07728.14 gi|313122695|ref|YP_004044622.1| - 0.033 14.2 0.0 11 6.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|313122695|ref|YP_004044622.1| - 0.042 13.9 0.0 0.099 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|313122695|ref|YP_004044622.1| - 0.046 13.5 0.1 0.22 11.2 0.0 2.1 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain TIP49_C PF17856.1 gi|313122695|ref|YP_004044622.1| - 0.05 13.8 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain RsgA_GTPase PF03193.16 gi|313122695|ref|YP_004044622.1| - 0.061 13.2 0.0 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_assoc_2 PF16193.5 gi|313122695|ref|YP_004044622.1| - 0.084 13.2 0.2 0.24 11.8 0.2 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_lid_4 PF17864.1 gi|313122695|ref|YP_004044622.1| - 0.099 12.4 0.1 0.33 10.7 0.1 1.9 1 0 0 1 1 1 0 RuvB AAA lid domain AAA_33 PF13671.6 gi|313122695|ref|YP_004044622.1| - 0.13 12.4 0.3 2 8.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|313122695|ref|YP_004044622.1| - 0.15 12.5 0.2 0.46 11.0 0.0 2.0 2 1 0 2 2 2 0 ABC transporter ATPase_2 PF01637.18 gi|313122696|ref|YP_004044623.1| - 2.4e-25 89.8 0.0 2.5e-24 86.5 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|313122696|ref|YP_004044623.1| - 4.8e-17 62.2 0.0 9.4e-17 61.3 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_16 PF13191.6 gi|313122696|ref|YP_004044623.1| - 1.3e-06 28.9 0.1 2.9e-06 27.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122696|ref|YP_004044623.1| - 6e-06 26.6 0.0 1.2e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|313122696|ref|YP_004044623.1| - 1.7e-05 24.9 0.0 2.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|313122696|ref|YP_004044623.1| - 0.054 13.3 0.1 0.15 11.9 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4143 PF13635.6 gi|313122696|ref|YP_004044623.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Acetyltransf_1 PF00583.25 gi|313122697|ref|YP_004044624.1| - 8.1e-19 68.0 0.2 1e-18 67.6 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313122697|ref|YP_004044624.1| - 7.8e-18 64.6 0.0 1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313122697|ref|YP_004044624.1| - 1.7e-15 57.5 0.2 2.1e-15 57.2 0.2 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313122697|ref|YP_004044624.1| - 3.3e-15 56.3 0.1 4.9e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313122697|ref|YP_004044624.1| - 3.2e-09 36.6 0.0 5.7e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|313122697|ref|YP_004044624.1| - 2e-08 34.3 0.4 1.8e-07 31.3 0.4 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313122697|ref|YP_004044624.1| - 5.5e-08 33.6 0.6 6.5e-08 33.3 0.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|313122697|ref|YP_004044624.1| - 0.00039 20.3 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.7 gi|313122697|ref|YP_004044624.1| - 0.0027 17.8 0.0 0.0036 17.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AstA PF04958.12 gi|313122697|ref|YP_004044624.1| - 0.025 13.1 0.1 0.15 10.5 0.0 1.9 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit DUF4821 PF16092.5 gi|313122697|ref|YP_004044624.1| - 0.029 14.0 0.5 0.063 12.9 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4821) Acetyltransf_CG PF14542.6 gi|313122697|ref|YP_004044624.1| - 0.07 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AMP-binding PF00501.28 gi|313122698|ref|YP_004044625.1| - 2.5e-87 293.2 0.1 3.6e-87 292.7 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313122698|ref|YP_004044625.1| - 8.9e-19 68.3 0.8 2e-18 67.2 0.8 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|313122698|ref|YP_004044625.1| - 8.6e-11 41.6 2.2 2e-10 40.4 2.2 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DMRL_synthase PF00885.19 gi|313122698|ref|YP_004044625.1| - 0.027 14.3 1.1 2.6 7.9 0.0 2.2 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase BAT PF15915.5 gi|313122699|ref|YP_004044626.1| - 6.8e-41 139.7 7.0 6.8e-41 139.7 7.0 2.4 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|313122699|ref|YP_004044626.1| - 1.1e-20 73.2 0.0 3.5e-20 71.5 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|313122699|ref|YP_004044626.1| - 4.7e-09 36.7 0.8 1.1e-08 35.5 0.8 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|313122699|ref|YP_004044626.1| - 6.8e-08 32.9 0.2 1.5e-07 31.8 0.2 1.6 1 0 0 1 1 1 1 GAF domain Phage_integrase PF00589.22 gi|313122699|ref|YP_004044626.1| - 8.4e-06 25.7 0.0 0.00014 21.7 0.0 2.4 2 0 0 2 2 2 1 Phage integrase family GAF PF01590.26 gi|313122699|ref|YP_004044626.1| - 0.008 16.8 0.0 0.019 15.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.16 gi|313122699|ref|YP_004044626.1| - 0.019 14.5 0.0 0.064 12.8 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|313122699|ref|YP_004044626.1| - 0.05 13.5 0.3 14 5.7 0.0 3.0 2 0 0 2 2 2 0 MarR family GerE PF00196.19 gi|313122699|ref|YP_004044626.1| - 0.096 12.3 0.0 0.33 10.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|313122699|ref|YP_004044626.1| - 0.13 11.9 0.1 0.43 10.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding AMP-binding PF00501.28 gi|313122700|ref|YP_004044627.1| - 4.2e-90 302.3 0.0 5e-90 302.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313122700|ref|YP_004044627.1| - 7.1e-23 81.4 0.3 1.4e-22 80.5 0.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|313122700|ref|YP_004044627.1| - 1e-14 54.1 3.1 4.7e-14 52.0 3.1 2.2 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF4212 PF13937.6 gi|313122701|ref|YP_004044628.1| - 1.2e-20 73.7 0.1 1.5e-20 73.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF485 PF04341.12 gi|313122701|ref|YP_004044628.1| - 0.0026 17.7 0.4 0.0037 17.2 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF485 SSF PF00474.17 gi|313122702|ref|YP_004044629.1| - 6e-55 186.8 34.5 8.9e-55 186.2 34.5 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Ycf9 PF01737.17 gi|313122702|ref|YP_004044629.1| - 0.0098 15.7 2.9 2.4 8.1 0.0 3.6 2 0 0 2 2 2 2 YCF9 UFC1 PF08694.11 gi|313122702|ref|YP_004044629.1| - 0.2 11.3 0.2 0.37 10.4 0.2 1.4 1 0 0 1 1 1 0 Ubiquitin-fold modifier-conjugating enzyme 1 Usp PF00582.26 gi|313122703|ref|YP_004044630.1| - 4.4e-39 134.2 1.4 5.3e-39 133.9 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family YrzK PF17449.2 gi|313122703|ref|YP_004044630.1| - 0.078 13.3 0.1 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized YrzK-like TMEM208_SND2 PF05620.11 gi|313122704|ref|YP_004044631.1| - 0.071 12.9 0.2 0.08 12.7 0.2 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 Abhydrolase_1 PF00561.20 gi|313122705|ref|YP_004044632.1| - 4.3e-23 82.3 0.0 1.5e-17 64.1 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313122705|ref|YP_004044632.1| - 1.8e-19 71.3 0.9 2e-19 71.1 0.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313122705|ref|YP_004044632.1| - 2.6e-16 59.6 0.1 6.4e-16 58.3 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 UPF0227 PF05728.12 gi|313122705|ref|YP_004044632.1| - 1.3e-05 25.2 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Ndr PF03096.14 gi|313122705|ref|YP_004044632.1| - 6e-05 21.9 0.0 0.00023 19.9 0.0 1.7 1 1 1 2 2 2 1 Ndr family Thioesterase PF00975.20 gi|313122705|ref|YP_004044632.1| - 0.00021 21.5 0.0 0.00023 21.4 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain DUF2048 PF09752.9 gi|313122705|ref|YP_004044632.1| - 0.0057 15.8 0.0 0.023 13.8 0.0 1.8 2 0 0 2 2 2 1 Abhydrolase domain containing 18 Patatin PF01734.22 gi|313122705|ref|YP_004044632.1| - 0.0086 16.3 0.1 0.016 15.4 0.1 1.6 1 1 0 1 1 1 1 Patatin-like phospholipase Esterase PF00756.20 gi|313122705|ref|YP_004044632.1| - 0.015 15.0 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase PGAP1 PF07819.13 gi|313122705|ref|YP_004044632.1| - 0.024 14.4 0.4 7.6 6.2 0.0 2.6 2 1 1 3 3 3 0 PGAP1-like protein Esterase_phd PF10503.9 gi|313122705|ref|YP_004044632.1| - 0.028 13.9 0.1 0.27 10.7 0.0 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase FSH1 PF03959.13 gi|313122705|ref|YP_004044632.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DoxX PF07681.12 gi|313122706|ref|YP_004044633.1| - 2.9e-21 75.8 14.1 5.1e-21 75.0 14.1 1.4 1 0 0 1 1 1 1 DoxX DoxD PF04173.13 gi|313122706|ref|YP_004044633.1| - 0.00057 19.8 2.8 0.00099 19.0 2.8 1.5 1 0 0 1 1 1 1 TQO small subunit DoxD SseC PF04888.12 gi|313122706|ref|YP_004044633.1| - 0.97 9.0 2.6 1.5 8.4 2.6 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family PQQ_3 PF13570.6 gi|313122708|ref|YP_004044635.1| - 1.4e-61 203.6 45.5 4.7e-11 42.8 1.0 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|313122708|ref|YP_004044635.1| - 8.2e-51 172.9 17.5 5.4e-18 65.4 2.8 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|313122708|ref|YP_004044635.1| - 1.2e-49 164.0 16.9 6.4e-08 32.2 0.2 7.3 7 0 0 7 7 7 7 PQQ enzyme repeat DUF5074 PF16819.5 gi|313122708|ref|YP_004044635.1| - 0.00024 21.1 0.1 3.5 7.7 0.0 3.7 3 1 1 4 4 4 1 Domain of unknown function (DUF5074) PsbP PF01789.16 gi|313122708|ref|YP_004044635.1| - 0.00057 20.1 0.0 29 4.8 0.0 4.4 3 1 2 5 5 5 0 PsbP SUKH-4 PF14435.6 gi|313122708|ref|YP_004044635.1| - 0.00072 19.6 7.6 1.8 8.6 0.4 4.1 1 1 2 4 4 4 2 SUKH-4 immunity protein Tachylectin PF14517.6 gi|313122708|ref|YP_004044635.1| - 0.00074 19.1 5.1 0.16 11.5 0.6 3.4 1 1 2 3 3 3 2 Tachylectin DUF1150 PF06620.11 gi|313122708|ref|YP_004044635.1| - 0.026 14.6 1.7 15 5.8 0.0 4.7 6 0 0 6 6 6 0 Protein of unknown function (DUF1150) Me-amine-dh_H PF06433.11 gi|313122708|ref|YP_004044635.1| - 0.1 11.4 0.0 1.8 7.3 0.0 2.4 1 1 1 2 2 2 0 Methylamine dehydrogenase heavy chain (MADH) MHC_II_alpha PF00993.20 gi|313122708|ref|YP_004044635.1| - 0.13 12.0 1.6 9.1 6.0 0.0 3.1 1 1 2 3 3 3 0 Class II histocompatibility antigen, alpha domain Lipoprotein_15 PF03640.15 gi|313122708|ref|YP_004044635.1| - 1.1 8.9 6.1 0.23 11.0 0.3 3.0 3 0 0 3 3 3 0 Secreted repeat of unknown function PQQ_3 PF13570.6 gi|313122709|ref|YP_004044636.1| - 4.2e-74 243.4 29.2 5.9e-13 48.9 0.7 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|313122709|ref|YP_004044636.1| - 1.1e-50 172.4 6.3 2.3e-32 112.5 1.6 3.4 2 2 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|313122709|ref|YP_004044636.1| - 1.4e-48 160.6 17.3 9.7e-11 41.1 0.1 9.0 9 0 0 9 9 9 5 PQQ enzyme repeat SUKH-4 PF14435.6 gi|313122709|ref|YP_004044636.1| - 6.6e-05 23.0 1.1 0.27 11.3 0.0 4.1 3 3 1 4 4 4 2 SUKH-4 immunity protein Arylsulfotrans PF05935.11 gi|313122709|ref|YP_004044636.1| - 0.012 14.6 0.0 8.1 5.2 0.0 3.3 2 1 2 4 4 4 0 Arylsulfotransferase (ASST) DUF4394 PF14339.6 gi|313122709|ref|YP_004044636.1| - 0.08 12.3 0.2 5.6 6.2 0.0 3.4 2 2 2 4 4 4 0 Domain of unknown function (DUF4394) DUF4905 PF16248.5 gi|313122709|ref|YP_004044636.1| - 0.1 12.5 0.3 2.8 7.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4905) Glycos_transf_2 PF00535.26 gi|313122709|ref|YP_004044636.1| - 0.17 11.7 0.1 0.31 10.8 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 RHS PF03527.14 gi|313122709|ref|YP_004044636.1| - 6.1 6.7 7.8 7 6.5 0.1 4.5 6 0 0 6 6 6 0 RHS protein DUF4382 PF14321.6 gi|313122710|ref|YP_004044637.1| - 4.8e-30 104.6 0.9 4.8e-30 104.6 0.9 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4382) DUF4198 PF10670.9 gi|313122710|ref|YP_004044637.1| - 0.00032 21.1 11.4 0.055 13.8 0.3 3.5 2 1 1 3 3 3 2 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|313122710|ref|YP_004044637.1| - 0.00036 20.8 18.4 0.001 19.3 1.3 3.9 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|313122710|ref|YP_004044637.1| - 0.00043 20.2 11.8 0.051 13.6 0.7 3.6 3 2 0 3 3 3 2 CarboxypepD_reg-like domain DUF3558 PF12079.8 gi|313122710|ref|YP_004044637.1| - 0.0039 17.2 1.4 0.011 15.8 1.4 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3558) PEGA PF08308.11 gi|313122710|ref|YP_004044637.1| - 0.1 12.5 4.4 6.9 6.6 0.5 3.6 2 1 0 2 2 2 0 PEGA domain DUF3126 PF11324.8 gi|313122710|ref|YP_004044637.1| - 0.68 9.8 7.5 3.9 7.4 0.1 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3126) DUF2969 PF11184.8 gi|313122710|ref|YP_004044637.1| - 2.5 8.6 5.8 6.6 7.2 0.2 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2969) Nitroreductase PF00881.24 gi|313122711|ref|YP_004044638.1| - 4.9e-14 52.7 0.0 5.3e-09 36.3 0.0 2.3 2 0 0 2 2 2 2 Nitroreductase family Sugar_tr PF00083.24 gi|313122713|ref|YP_004044640.1| - 6.4e-125 417.5 23.9 7.4e-125 417.3 23.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|313122713|ref|YP_004044640.1| - 2.9e-40 138.3 62.3 1.3e-31 109.8 22.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|313122713|ref|YP_004044640.1| - 1e-08 34.1 2.3 1e-08 34.1 2.3 2.0 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.7 gi|313122713|ref|YP_004044640.1| - 0.00024 20.1 0.4 0.00024 20.1 0.4 2.5 1 1 0 2 2 2 1 MFS_1 like family OATP PF03137.20 gi|313122713|ref|YP_004044640.1| - 0.064 11.5 9.6 1.2 7.3 1.7 3.0 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Bac_export_3 PF01313.19 gi|313122713|ref|YP_004044640.1| - 0.069 13.1 0.1 0.069 13.1 0.1 3.7 4 0 0 4 4 4 0 Bacterial export proteins, family 3 SBF PF01758.16 gi|313122714|ref|YP_004044641.1| - 1.1e-11 44.8 14.1 2e-11 44.0 14.1 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|313122714|ref|YP_004044641.1| - 6.5e-08 32.2 16.6 9.1e-08 31.8 16.6 1.3 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) HxlR PF01638.17 gi|313122715|ref|YP_004044642.1| - 3.1e-20 71.8 0.0 3.8e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|313122715|ref|YP_004044642.1| - 4e-05 23.5 0.3 6e-05 22.9 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|313122715|ref|YP_004044642.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|313122715|ref|YP_004044642.1| - 0.0015 18.4 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313122715|ref|YP_004044642.1| - 0.002 18.1 0.0 0.0036 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|313122715|ref|YP_004044642.1| - 0.0085 16.2 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|313122715|ref|YP_004044642.1| - 0.015 15.7 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 gi|313122715|ref|YP_004044642.1| - 0.026 15.0 0.0 0.037 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|313122715|ref|YP_004044642.1| - 0.04 13.9 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|313122715|ref|YP_004044642.1| - 0.075 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SHOCT PF09851.9 gi|313122715|ref|YP_004044642.1| - 0.09 12.5 0.9 0.49 10.2 0.4 2.3 2 0 0 2 2 2 0 Short C-terminal domain LexA_DNA_bind PF01726.16 gi|313122715|ref|YP_004044642.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|313122715|ref|YP_004044642.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Peripla_BP_2 PF01497.18 gi|313122717|ref|YP_004044644.1| - 3e-27 95.7 0.0 3.7e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313122717|ref|YP_004044644.1| - 0.004 16.9 0.7 0.0078 16.0 0.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|313122718|ref|YP_004044645.1| - 4.6e-28 97.6 0.1 4.6e-16 59.1 0.1 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313122718|ref|YP_004044645.1| - 1.2e-10 41.4 0.0 1e-05 25.6 0.0 2.4 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|313122718|ref|YP_004044645.1| - 0.31 11.0 0.9 0.49 10.3 0.1 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Serpentine_r_xa PF03383.15 gi|313122720|ref|YP_004044647.1| - 0.088 12.8 2.0 0.21 11.6 0.2 1.9 1 1 1 2 2 2 0 Caenorhabditis serpentine receptor-like protein, class xa DUF2417 PF10329.9 gi|313122720|ref|YP_004044647.1| - 0.66 9.3 5.7 0.83 9.0 5.7 1.2 1 0 0 1 1 1 0 Region of unknown function (DUF2417) MS_channel PF00924.18 gi|313122721|ref|YP_004044648.1| - 7.2e-46 156.3 0.0 7.2e-46 156.3 0.0 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|313122721|ref|YP_004044648.1| - 0.017 15.1 0.0 0.017 15.1 0.0 2.7 2 1 0 2 2 2 0 Conserved TM helix NeuB PF03102.14 gi|313122721|ref|YP_004044648.1| - 0.037 13.5 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 NeuB family DUF2062 PF09835.9 gi|313122721|ref|YP_004044648.1| - 2.6 7.9 8.9 1.7 8.5 6.7 1.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) ABC_export PF16962.5 gi|313122721|ref|YP_004044648.1| - 4.4 5.6 10.6 5.8 5.2 10.6 1.1 1 0 0 1 1 1 0 Putative ABC exporter PRA1 PF03208.19 gi|313122721|ref|YP_004044648.1| - 6.6 6.4 9.0 11 5.6 9.0 1.4 1 0 0 1 1 1 0 PRA1 family protein Bac_export_2 PF01312.19 gi|313122721|ref|YP_004044648.1| - 9.7 5.3 7.4 14 4.8 7.4 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family OB_Dis3 PF17849.1 gi|313122722|ref|YP_004044649.1| - 0.00056 19.9 0.0 0.00076 19.4 0.0 1.2 1 0 0 1 1 1 1 Dis3-like cold-shock domain 2 (CSD2) TRAM_2 PF18693.1 gi|313122722|ref|YP_004044649.1| - 0.0015 18.6 0.2 1.8 8.8 0.0 2.1 2 0 0 2 2 2 2 TRAM domain Na_H_antiporter PF03553.14 gi|313122723|ref|YP_004044650.1| - 1.5e-33 116.4 40.8 2.5e-22 79.5 20.7 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.18 gi|313122724|ref|YP_004044651.1| - 3.4e-28 98.0 0.2 9.5e-28 96.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313122724|ref|YP_004044651.1| - 5.7e-08 32.4 0.0 2.1e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313122724|ref|YP_004044651.1| - 9.8e-05 22.3 0.1 0.00018 21.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313122724|ref|YP_004044651.1| - 0.00058 19.4 0.0 0.0013 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313122724|ref|YP_004044651.1| - 0.0016 18.3 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1803 PF08820.10 gi|313122724|ref|YP_004044651.1| - 0.002 18.1 0.1 0.0041 17.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) Sigma70_r4_2 PF08281.12 gi|313122724|ref|YP_004044651.1| - 0.0034 17.0 0.0 0.008 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|313122724|ref|YP_004044651.1| - 0.0044 16.9 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313122724|ref|YP_004044651.1| - 0.0083 16.0 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|313122724|ref|YP_004044651.1| - 0.014 15.9 0.2 0.029 14.8 0.2 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|313122724|ref|YP_004044651.1| - 0.014 15.3 0.2 0.03 14.3 0.2 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|313122724|ref|YP_004044651.1| - 0.023 14.6 0.1 0.12 12.3 0.1 2.1 2 0 0 2 2 2 0 HTH domain CodY PF06018.14 gi|313122724|ref|YP_004044651.1| - 0.027 14.0 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 CodY GAF-like domain HTH_40 PF14493.6 gi|313122724|ref|YP_004044651.1| - 0.074 13.5 0.1 0.16 12.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LIN52 PF10044.9 gi|313122724|ref|YP_004044651.1| - 0.091 13.5 0.4 16 6.3 0.1 2.3 2 0 0 2 2 2 0 Retinal tissue protein GCV_T PF01571.21 gi|313122725|ref|YP_004044652.1| - 4.3e-81 272.1 0.0 5.6e-81 271.7 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|313122725|ref|YP_004044652.1| - 3.4e-23 81.4 0.0 6.2e-23 80.5 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.9 gi|313122725|ref|YP_004044652.1| - 0.00021 21.6 0.0 0.066 13.6 0.0 2.5 2 0 0 2 2 2 2 GTP-binding protein TrmE N-terminus GCV_H PF01597.19 gi|313122726|ref|YP_004044653.1| - 2.7e-39 133.9 0.0 2.9e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|313122726|ref|YP_004044653.1| - 0.0086 15.9 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|313122726|ref|YP_004044653.1| - 0.072 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.16 gi|313122727|ref|YP_004044654.1| - 1.5e-103 346.9 0.0 1.8e-103 346.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|313122727|ref|YP_004044654.1| - 0.025 13.1 0.0 0.037 12.6 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme UPF0180 PF03698.13 gi|313122727|ref|YP_004044654.1| - 0.043 14.0 0.3 0.089 13.0 0.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Aminotran_5 PF00266.19 gi|313122728|ref|YP_004044655.1| - 1.3e-09 37.5 0.0 1.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|313122728|ref|YP_004044655.1| - 6.4e-07 28.6 0.0 8.3e-06 24.9 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|313122728|ref|YP_004044655.1| - 0.00093 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase IFT46_B_C PF12317.8 gi|313122728|ref|YP_004044655.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal SHMT PF00464.19 gi|313122729|ref|YP_004044656.1| - 4.5e-159 529.3 0.4 5.5e-159 529.1 0.4 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|313122729|ref|YP_004044656.1| - 2.3e-08 33.6 0.0 5.8e-08 32.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|313122729|ref|YP_004044656.1| - 1.3e-05 24.6 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 2 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|313122729|ref|YP_004044656.1| - 6.5e-05 22.4 0.2 9.4e-05 21.9 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family PALP PF00291.25 gi|313122730|ref|YP_004044657.1| - 1.1e-85 287.7 4.9 1.3e-85 287.4 4.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|313122730|ref|YP_004044657.1| - 1.4e-08 34.3 0.2 4.3e-08 32.8 0.2 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|313122730|ref|YP_004044657.1| - 1.5e-05 25.5 0.0 7.2e-05 23.3 0.0 2.2 3 0 0 3 3 3 1 ACT domain Beta-lactamase PF00144.24 gi|313122731|ref|YP_004044658.1| - 4.1e-61 207.1 0.0 6.1e-61 206.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|313122731|ref|YP_004044658.1| - 2.7e-32 110.7 0.0 5.6e-32 109.7 0.0 1.6 1 0 0 1 1 1 1 Pab87 octamerisation domain Pyr_redox_2 PF07992.14 gi|313122732|ref|YP_004044659.1| - 9.7e-68 228.5 1.1 9.7e-68 228.5 1.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|313122732|ref|YP_004044659.1| - 1.9e-35 121.4 1.0 1.9e-35 121.4 1.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|313122732|ref|YP_004044659.1| - 1.5e-21 76.8 7.3 7.8e-19 68.0 0.2 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313122732|ref|YP_004044659.1| - 1.1e-10 41.2 5.2 1.9e-08 33.8 1.0 3.3 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|313122732|ref|YP_004044659.1| - 1.5e-09 37.4 3.6 2.4e-07 30.2 1.3 2.7 3 1 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|313122732|ref|YP_004044659.1| - 2.2e-09 37.0 1.0 0.00046 19.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|313122732|ref|YP_004044659.1| - 1.8e-08 34.5 2.3 5e-05 23.4 0.6 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|313122732|ref|YP_004044659.1| - 3.3e-08 33.3 0.2 6e-08 32.5 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|313122732|ref|YP_004044659.1| - 9.2e-08 31.7 4.4 5.8e-05 22.5 0.3 2.9 2 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|313122732|ref|YP_004044659.1| - 1.2e-07 30.8 3.3 2.6e-05 23.1 0.6 3.1 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|313122732|ref|YP_004044659.1| - 1.3e-07 31.5 7.9 0.002 17.8 1.1 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|313122732|ref|YP_004044659.1| - 3.5e-06 26.7 3.1 0.00043 19.9 0.0 3.0 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|313122732|ref|YP_004044659.1| - 8.7e-06 25.7 6.6 0.00089 19.2 0.0 3.3 3 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|313122732|ref|YP_004044659.1| - 0.00021 20.6 4.5 0.001 18.4 0.1 2.9 3 0 0 3 3 3 1 Thi4 family NAD_binding_7 PF13241.6 gi|313122732|ref|YP_004044659.1| - 0.00098 19.5 0.2 1.6 9.2 0.0 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|313122732|ref|YP_004044659.1| - 0.0048 15.8 0.1 0.0048 15.8 0.1 1.6 2 0 0 2 2 2 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|313122732|ref|YP_004044659.1| - 0.0056 16.0 8.6 0.54 9.5 0.1 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|313122732|ref|YP_004044659.1| - 0.0058 15.7 2.9 0.063 12.3 0.9 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein XdhC_C PF13478.6 gi|313122732|ref|YP_004044659.1| - 0.017 15.7 0.7 0.77 10.3 0.0 2.7 3 0 0 3 3 2 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|313122732|ref|YP_004044659.1| - 0.046 14.0 3.8 0.18 12.1 0.1 2.9 3 0 0 3 3 3 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|313122732|ref|YP_004044659.1| - 0.081 12.3 0.1 1.2 8.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|313122732|ref|YP_004044659.1| - 0.13 12.2 2.0 0.76 9.7 0.2 2.8 2 1 1 3 3 3 0 FAD-NAD(P)-binding HTH_26 PF13443.6 gi|313122732|ref|YP_004044659.1| - 0.19 12.2 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Radical_SAM PF04055.21 gi|313122733|ref|YP_004044660.1| - 5.6e-15 56.1 0.0 1.3e-14 54.9 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|313122733|ref|YP_004044660.1| - 3.9e-11 43.3 0.0 2.5e-10 40.7 0.0 2.1 2 1 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family Ribonuc_L-PSP PF01042.21 gi|313122734|ref|YP_004044661.1| - 3.1e-39 133.7 0.1 3.4e-39 133.6 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|313122734|ref|YP_004044661.1| - 0.0017 18.5 0.0 0.0021 18.2 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease DUF5130 PF17174.4 gi|313122734|ref|YP_004044661.1| - 0.017 15.4 0.1 0.022 15.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5130) NIR_SIR PF01077.22 gi|313122735|ref|YP_004044662.1| - 1.8e-46 157.6 0.0 7.3e-35 119.8 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|313122735|ref|YP_004044662.1| - 3.3e-30 103.7 0.2 1.2e-13 50.6 0.0 3.5 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|313122735|ref|YP_004044662.1| - 0.0041 17.2 0.0 1.3 9.2 0.0 3.0 3 0 0 3 3 3 2 DGC domain FrhB_FdhB_C PF04432.13 gi|313122736|ref|YP_004044663.1| - 2.7e-28 98.7 0.0 5.3e-28 97.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|313122736|ref|YP_004044663.1| - 8.3e-22 77.1 0.0 1.5e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|313122736|ref|YP_004044663.1| - 1.7e-09 37.6 4.4 1.7e-09 37.6 4.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313122736|ref|YP_004044663.1| - 1.1e-08 34.6 17.2 2.1e-06 27.3 3.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|313122736|ref|YP_004044663.1| - 3.1e-08 33.6 5.5 3.1e-08 33.6 5.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313122736|ref|YP_004044663.1| - 3.1e-07 30.4 6.2 3.1e-07 30.4 6.2 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313122736|ref|YP_004044663.1| - 2.3e-06 28.5 10.8 0.023 15.6 0.9 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|313122736|ref|YP_004044663.1| - 4.3e-05 24.0 12.5 0.0018 18.9 1.7 3.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313122736|ref|YP_004044663.1| - 4.3e-05 23.4 3.4 4.3e-05 23.4 3.4 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|313122736|ref|YP_004044663.1| - 0.00016 21.6 3.3 0.00016 21.6 3.3 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|313122736|ref|YP_004044663.1| - 0.00071 19.7 1.1 0.002 18.3 1.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|313122736|ref|YP_004044663.1| - 0.0022 18.4 4.6 0.0022 18.4 4.6 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|313122736|ref|YP_004044663.1| - 0.0022 18.5 1.6 0.018 15.5 0.2 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|313122736|ref|YP_004044663.1| - 0.032 14.8 13.2 0.36 11.4 3.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TonB_2 PF13103.6 gi|313122736|ref|YP_004044663.1| - 0.039 14.2 0.0 0.21 11.8 0.0 2.1 2 0 0 2 2 2 0 TonB C terminal Fer4_15 PF13459.6 gi|313122736|ref|YP_004044663.1| - 0.056 14.2 10.7 0.099 13.4 0.9 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|313122736|ref|YP_004044663.1| - 0.28 11.6 15.5 0.63 10.5 4.0 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|313122736|ref|YP_004044663.1| - 1.7 9.5 10.0 8 7.4 1.7 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain YbjQ_1 PF01906.17 gi|313122737|ref|YP_004044664.1| - 1.1e-32 112.7 2.9 1.3e-32 112.6 2.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding PKD PF00801.20 gi|313122738|ref|YP_004044665.1| - 8.3e-11 41.6 6.9 2.3e-10 40.2 6.9 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313122738|ref|YP_004044665.1| - 0.0053 17.3 5.0 0.027 15.0 5.0 2.4 1 0 0 1 1 1 1 Carbohydrate binding domain DUF5011 PF16403.5 gi|313122738|ref|YP_004044665.1| - 0.017 15.2 4.6 0.041 14.0 4.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5011) PKD_3 PF16820.5 gi|313122738|ref|YP_004044665.1| - 0.025 14.3 1.9 0.025 14.3 1.9 2.1 2 0 0 2 2 2 0 PKD-like domain GAT PF03127.14 gi|313122738|ref|YP_004044665.1| - 0.037 14.3 0.2 0.07 13.5 0.2 1.4 1 0 0 1 1 1 0 GAT domain Ig_3 PF13927.6 gi|313122738|ref|YP_004044665.1| - 0.09 13.4 2.0 0.32 11.6 0.8 2.4 2 0 0 2 2 2 0 Immunoglobulin domain FctA PF12892.7 gi|313122738|ref|YP_004044665.1| - 0.099 13.5 5.5 0.27 12.1 5.5 1.7 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Big_3 PF07523.12 gi|313122738|ref|YP_004044665.1| - 2.3 8.6 10.1 1.5 9.1 5.8 2.7 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) Zot PF05707.12 gi|313122740|ref|YP_004044666.1| - 0.0012 18.5 0.1 0.13 11.8 0.2 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA PF00004.29 gi|313122740|ref|YP_004044666.1| - 0.0089 16.4 0.0 2.4 8.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|313122740|ref|YP_004044666.1| - 0.036 13.5 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|313122740|ref|YP_004044666.1| - 0.075 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|313122740|ref|YP_004044666.1| - 0.089 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|313122740|ref|YP_004044666.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|313122740|ref|YP_004044666.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|313122740|ref|YP_004044666.1| - 0.16 12.4 0.0 0.57 10.6 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.6 gi|313122740|ref|YP_004044666.1| - 0.24 11.1 0.0 0.4 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rnk_N PF14760.6 gi|313122743|ref|YP_004044669.1| - 1.9 9.0 6.9 16 6.1 1.7 2.9 2 0 0 2 2 2 0 Rnk N-terminus HTH_38 PF13936.6 gi|313122744|ref|YP_004044670.1| - 0.00059 19.5 0.0 0.0012 18.5 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|313122744|ref|YP_004044670.1| - 0.057 13.2 0.2 0.14 12.0 0.1 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|313122744|ref|YP_004044670.1| - 0.072 13.2 0.3 0.13 12.5 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Ribosomal_L2_C PF03947.18 gi|313122745|ref|YP_004044671.1| - 0.06 13.5 0.0 0.074 13.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal Proteins L2, C-terminal domain Vfa1 PF08432.10 gi|313122746|ref|YP_004044672.1| - 3.7 7.8 6.0 7.4 6.9 6.0 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 AAA_19 PF13245.6 gi|313122747|ref|YP_004044673.1| - 1.1e-11 45.3 0.0 5.6e-11 43.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|313122747|ref|YP_004044673.1| - 1.2e-09 38.0 0.0 2e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|313122747|ref|YP_004044673.1| - 4e-08 33.0 0.4 1.5e-07 31.2 0.4 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|313122747|ref|YP_004044673.1| - 1e-06 28.7 0.0 0.05 13.3 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|313122747|ref|YP_004044673.1| - 1.9e-06 27.6 0.0 0.025 14.1 0.0 2.6 2 1 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_30 PF13604.6 gi|313122747|ref|YP_004044673.1| - 2.3e-06 27.5 0.0 0.00076 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|313122747|ref|YP_004044673.1| - 0.042 14.1 0.0 16 5.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|313122747|ref|YP_004044673.1| - 0.078 12.7 0.1 2.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|313122747|ref|YP_004044673.1| - 0.17 12.2 0.1 1.7 9.0 0.0 2.6 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|313122747|ref|YP_004044673.1| - 0.19 12.2 0.0 1.5 9.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Phage_integrase PF00589.22 gi|313122749|ref|YP_004044675.1| - 1.2e-12 48.0 0.2 1.3e-11 44.6 0.2 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_integrase PF00589.22 gi|313122750|ref|YP_004044676.1| - 2.4e-09 37.2 0.0 1.1e-08 35.0 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family zf-primase PF09329.11 gi|313122750|ref|YP_004044676.1| - 1.2e-05 25.0 2.4 0.0048 16.7 0.4 2.5 1 1 1 2 2 2 2 Primase zinc finger Malate_DH PF12434.8 gi|313122750|ref|YP_004044676.1| - 0.5 10.4 2.0 1.8 8.7 2.0 1.9 1 0 0 1 1 1 0 Malate dehydrogenase enzyme Phage_integrase PF00589.22 gi|313122755|ref|YP_004044681.1| - 1.9e-25 89.6 0.0 2.3e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family RHH_1 PF01402.21 gi|313122756|ref|YP_004044682.1| - 0.00079 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParE_toxin PF05016.15 gi|313122757|ref|YP_004044683.1| - 5.1e-06 27.0 0.1 6.7e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE VAPB_antitox PF02697.14 gi|313122758|ref|YP_004044684.1| - 5.4e-06 27.1 0.1 1.7e-05 25.5 0.0 1.9 2 0 0 2 2 2 1 Putative antitoxin RHH_1 PF01402.21 gi|313122758|ref|YP_004044684.1| - 0.11 12.5 0.3 0.31 11.0 0.3 1.9 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family ACOX PF01756.19 gi|313122759|ref|YP_004044685.1| - 0.17 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA oxidase MazE_antitoxin PF04014.18 gi|313122761|ref|YP_004044687.1| - 0.00022 21.0 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TOBE PF03459.17 gi|313122761|ref|YP_004044687.1| - 0.025 14.9 0.0 0.028 14.7 0.0 1.1 1 0 0 1 1 1 0 TOBE domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/all.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/all.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:54:57 2019 # [ok]