# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|389845494|ref|YP_006347733.1| - 2.7e-24 84.9 0.1 6.9e-24 83.6 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|389845494|ref|YP_006347733.1| - 5.9e-11 43.0 0.1 2e-10 41.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389845494|ref|YP_006347733.1| - 1e-08 35.5 0.5 5.7e-07 29.9 0.5 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|389845494|ref|YP_006347733.1| - 3.5e-08 33.9 0.7 1.1e-06 29.1 0.7 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|389845494|ref|YP_006347733.1| - 0.00014 21.9 0.8 0.00059 19.8 0.8 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|389845494|ref|YP_006347733.1| - 0.00092 18.7 0.3 0.007 15.8 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|389845494|ref|YP_006347733.1| - 0.0026 17.5 0.0 0.0063 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|389845494|ref|YP_006347733.1| - 0.0033 17.2 0.0 0.0092 15.7 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|389845494|ref|YP_006347733.1| - 0.0037 16.5 0.0 0.0068 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|389845494|ref|YP_006347733.1| - 0.0055 16.8 0.0 0.036 14.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|389845494|ref|YP_006347733.1| - 0.0069 15.5 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NB-ARC PF00931.22 gi|389845494|ref|YP_006347733.1| - 0.0098 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.27 gi|389845494|ref|YP_006347733.1| - 0.019 15.4 0.0 0.051 14.1 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|389845494|ref|YP_006347733.1| - 0.027 15.0 0.0 0.066 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|389845494|ref|YP_006347733.1| - 0.033 13.6 0.1 0.077 12.3 0.1 1.6 1 0 0 1 1 1 0 KaiC TIP49 PF06068.13 gi|389845494|ref|YP_006347733.1| - 0.046 12.9 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain DNA_pol3_delta2 PF13177.6 gi|389845494|ref|YP_006347733.1| - 0.047 13.5 0.1 0.17 11.6 0.1 1.9 2 1 0 2 2 2 0 DNA polymerase III, delta subunit AAA_7 PF12775.7 gi|389845494|ref|YP_006347733.1| - 0.054 13.0 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|389845494|ref|YP_006347733.1| - 0.061 12.6 0.3 0.27 10.4 0.3 1.9 1 1 0 1 1 1 0 KAP family P-loop domain AAA_assoc_2 PF16193.5 gi|389845494|ref|YP_006347733.1| - 0.076 13.4 0.3 0.3 11.4 0.3 2.0 1 0 0 1 1 1 0 AAA C-terminal domain AAA_13 PF13166.6 gi|389845494|ref|YP_006347733.1| - 0.084 11.5 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain MutS_III PF05192.18 gi|389845494|ref|YP_006347733.1| - 0.16 12.2 3.3 0.92 9.7 3.3 2.1 1 1 0 1 1 1 0 MutS domain III AAA_24 PF13479.6 gi|389845494|ref|YP_006347733.1| - 0.17 11.6 1.0 0.44 10.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|389845494|ref|YP_006347733.1| - 0.17 12.3 0.0 0.4 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|389845494|ref|YP_006347733.1| - 0.36 10.1 1.8 0.62 9.4 0.4 2.1 2 1 0 2 2 2 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|389845494|ref|YP_006347733.1| - 0.38 10.5 3.8 5.8 6.6 2.2 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase Peptidase_S24 PF00717.23 gi|662859274|ref|YP_006347734.2| - 0.00066 19.6 0.3 0.0017 18.3 0.3 1.8 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|662859275|ref|YP_006347735.2| - 1.5e-13 50.6 0.0 2.8e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|662859275|ref|YP_006347735.2| - 5.9e-12 46.1 3.3 1.5e-11 44.7 3.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|662859275|ref|YP_006347735.2| - 5e-09 37.0 1.4 6.8e-09 36.5 0.7 1.5 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 gi|662859275|ref|YP_006347735.2| - 0.0034 17.3 0.0 0.0074 16.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1249 PF06853.12 gi|662859275|ref|YP_006347735.2| - 0.16 12.0 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) Oxidored_FMN PF00724.20 gi|389845497|ref|YP_006347736.1| - 1.4e-66 225.1 0.0 1.6e-66 224.9 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|389845497|ref|YP_006347736.1| - 2e-06 27.4 0.1 3.4e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|389845497|ref|YP_006347736.1| - 0.03 13.7 0.7 0.064 12.6 0.7 1.6 1 0 0 1 1 1 0 Nitronate monooxygenase NanE PF04131.14 gi|389845497|ref|YP_006347736.1| - 0.046 12.9 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Zip PF02535.22 gi|389845498|ref|YP_006347737.1| - 3.1e-18 66.1 18.1 4e-13 49.3 8.5 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter AA_kinase PF00696.28 gi|389845500|ref|YP_006347739.1| - 1.4e-47 162.4 2.7 2.1e-47 161.8 2.7 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|389845500|ref|YP_006347739.1| - 3.3e-17 62.0 0.1 1.7e-10 40.5 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|389845500|ref|YP_006347739.1| - 1.3e-13 50.5 0.7 1e-05 25.2 0.0 2.9 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|389845500|ref|YP_006347739.1| - 4.4e-05 24.0 0.6 0.52 10.9 0.0 2.8 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|389845500|ref|YP_006347739.1| - 0.0045 16.9 0.2 0.39 10.7 0.1 3.0 2 0 0 2 2 2 1 ACT domain BON PF04972.17 gi|389845500|ref|YP_006347739.1| - 0.039 14.3 0.6 0.2 12.0 0.1 2.5 2 0 0 2 2 2 0 BON domain Beta_elim_lyase PF01212.21 gi|662859276|ref|YP_006347740.2| - 6e-72 242.4 0.0 9.3e-72 241.8 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Catalase_C PF18011.1 gi|662859276|ref|YP_006347740.2| - 0.00087 18.9 0.1 0.0016 18.1 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain found in long catalases Metallophos_2 PF12850.7 gi|389845502|ref|YP_006347741.1| - 6.3e-30 104.5 0.0 7.9e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|389845502|ref|YP_006347741.1| - 2.4e-11 44.5 0.0 3.5e-10 40.7 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|389845502|ref|YP_006347741.1| - 0.012 15.0 0.0 0.098 12.0 0.0 1.9 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily IMP_cyclohyd PF07826.11 gi|389845503|ref|YP_006347742.1| - 3.6e-67 225.7 0.0 4.3e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.10 gi|389845504|ref|YP_006347743.1| - 1.3e-06 28.7 0.0 1.5e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DEAD PF00270.29 gi|389845505|ref|YP_006347744.1| - 1.8e-24 86.5 0.0 2.9e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|389845505|ref|YP_006347744.1| - 3.6e-08 33.9 0.4 1.3e-07 32.1 0.4 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|389845505|ref|YP_006347744.1| - 1.5e-06 28.5 0.0 8.6e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|389845505|ref|YP_006347744.1| - 0.00038 20.2 0.0 0.0012 18.6 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda CXCR4_N PF12109.8 gi|389845505|ref|YP_006347744.1| - 0.12 12.5 0.1 0.12 12.5 0.1 2.8 2 0 0 2 2 2 0 CXCR4 Chemokine receptor N terminal HAMP PF00672.25 gi|389845505|ref|YP_006347744.1| - 0.14 12.5 0.9 0.53 10.7 0.9 2.0 1 0 0 1 1 1 0 HAMP domain Fer4_15 PF13459.6 gi|389845506|ref|YP_006347745.1| - 6.7e-20 71.6 5.4 8.1e-20 71.3 5.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|389845506|ref|YP_006347745.1| - 0.00079 19.9 2.7 0.0023 18.4 2.7 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|389845506|ref|YP_006347745.1| - 0.052 13.7 3.7 0.58 10.3 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|389845506|ref|YP_006347745.1| - 0.077 12.8 3.7 1.2 9.0 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ATPase PF06745.13 gi|389845508|ref|YP_006347747.1| - 4.5e-05 22.9 0.5 5.8e-05 22.5 0.5 1.1 1 0 0 1 1 1 1 KaiC PI-TkoII_IV PF18714.1 gi|389845508|ref|YP_006347747.1| - 0.074 12.5 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV DUF2391 PF09622.10 gi|389845509|ref|YP_006347748.1| - 4.7e-07 29.4 1.9 1.1e-06 28.2 1.9 1.7 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF3483 PF11982.8 gi|389845509|ref|YP_006347748.1| - 0.15 11.7 3.0 0.23 11.1 3.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3483) Methyltransf_11 PF08241.12 gi|389845510|ref|YP_006347749.1| - 1.2e-23 83.6 0.0 2.1e-23 82.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389845510|ref|YP_006347749.1| - 6e-20 71.8 0.0 1.7e-19 70.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389845510|ref|YP_006347749.1| - 1.5e-18 67.1 0.0 1.7e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389845510|ref|YP_006347749.1| - 2e-13 50.5 0.0 2.7e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389845510|ref|YP_006347749.1| - 3.3e-10 40.6 0.0 4.9e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389845510|ref|YP_006347749.1| - 4.9e-10 39.1 0.0 9.9e-10 38.1 0.0 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|389845510|ref|YP_006347749.1| - 3.6e-05 23.2 0.0 4.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain MetW PF07021.12 gi|389845510|ref|YP_006347749.1| - 0.00026 20.6 0.0 0.00045 19.9 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|389845510|ref|YP_006347749.1| - 0.00045 19.6 0.0 0.00061 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|389845510|ref|YP_006347749.1| - 0.0012 17.8 0.0 0.002 17.1 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|389845510|ref|YP_006347749.1| - 0.0026 17.6 0.0 0.0073 16.1 0.0 1.7 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|389845510|ref|YP_006347749.1| - 0.011 15.5 0.0 0.83 9.3 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Methyltransf_32 PF13679.6 gi|389845510|ref|YP_006347749.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|389845510|ref|YP_006347749.1| - 0.019 14.8 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase ABC_tran PF00005.27 gi|389845511|ref|YP_006347750.1| - 7.5e-35 120.4 0.0 1.3e-34 119.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389845511|ref|YP_006347750.1| - 2e-14 53.5 1.4 4.9e-14 52.3 0.2 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|389845511|ref|YP_006347750.1| - 1.1e-08 35.3 0.0 0.00026 20.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|389845511|ref|YP_006347750.1| - 0.00045 20.5 0.1 0.0026 18.0 0.0 2.4 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.6 gi|389845511|ref|YP_006347750.1| - 0.0011 19.3 0.0 0.0048 17.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389845511|ref|YP_006347750.1| - 0.0017 18.8 0.4 0.0049 17.3 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|389845511|ref|YP_006347750.1| - 0.0021 17.5 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|389845511|ref|YP_006347750.1| - 0.0048 17.3 0.2 0.096 13.1 0.1 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|389845511|ref|YP_006347750.1| - 0.0069 16.3 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|389845511|ref|YP_006347750.1| - 0.0089 15.6 0.2 0.43 10.1 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.6 gi|389845511|ref|YP_006347750.1| - 0.033 14.7 0.1 0.058 13.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389845511|ref|YP_006347750.1| - 0.045 13.5 0.1 0.2 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|389845511|ref|YP_006347750.1| - 0.15 12.2 0.3 2.1 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|389845511|ref|YP_006347750.1| - 0.16 10.7 0.3 0.92 8.2 0.0 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 gi|389845512|ref|YP_006347751.1| - 4.5e-25 88.5 32.3 5.2e-15 55.7 12.7 3.5 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|662859277|ref|YP_006347752.2| - 1.8e-25 89.8 0.0 2.7e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|662859277|ref|YP_006347752.2| - 3.5e-22 79.5 0.7 4.5e-22 79.2 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|662859277|ref|YP_006347752.2| - 1.7e-12 47.9 2.5 2.7e-12 47.3 2.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|662859277|ref|YP_006347752.2| - 5.4e-10 39.4 0.0 9.3e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|662859277|ref|YP_006347752.2| - 3e-05 23.7 7.7 3e-05 23.7 7.7 1.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Rhodanese PF00581.20 gi|389845514|ref|YP_006347753.1| - 8.7e-35 119.5 0.0 1.2e-17 64.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|662859278|ref|YP_006347754.2| - 2.4e-33 114.8 0.2 4.5e-17 62.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain AcylCoA_DH_N PF12418.8 gi|662859278|ref|YP_006347754.2| - 0.078 13.0 0.3 1 9.5 0.1 2.4 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase N terminal SCFA_trans PF02667.14 gi|389845516|ref|YP_006347755.1| - 8.5e-132 440.3 18.3 1.6e-131 439.4 18.3 1.4 1 1 0 1 1 1 1 Short chain fatty acid transporter Rubrerythrin PF02915.17 gi|389845517|ref|YP_006347756.1| - 0.02 15.3 1.1 1.6 9.1 0.0 2.6 2 1 0 2 2 2 0 Rubrerythrin Exonuc_VII_L PF02601.15 gi|389845518|ref|YP_006347757.1| - 0.019 14.6 0.2 0.02 14.5 0.2 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2884 PF11101.8 gi|389845518|ref|YP_006347757.1| - 0.024 14.2 0.4 0.026 14.0 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) DUF4398 PF14346.6 gi|389845518|ref|YP_006347757.1| - 0.048 14.3 7.3 0.11 13.2 7.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) CdvA PF18822.1 gi|389845518|ref|YP_006347757.1| - 0.1 12.4 2.6 1.9 8.3 0.4 2.0 2 0 0 2 2 2 0 CdvA-like coiled-coil domain UvrB_inter PF17757.1 gi|389845519|ref|YP_006347758.1| - 2.8e-31 107.6 0.0 6.6e-31 106.3 0.0 1.7 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|389845519|ref|YP_006347758.1| - 1.5e-21 76.0 0.4 2.7e-21 75.1 0.4 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|389845519|ref|YP_006347758.1| - 2.8e-16 59.8 0.1 7.9e-16 58.4 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|389845519|ref|YP_006347758.1| - 3.1e-09 36.3 6.5 3.1e-09 36.3 6.5 3.4 3 0 0 3 3 3 1 UvrB/uvrC motif ResIII PF04851.15 gi|389845519|ref|YP_006347758.1| - 5.5e-07 29.7 0.0 1.6e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|389845519|ref|YP_006347758.1| - 0.00016 21.4 0.1 0.012 15.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|389845519|ref|YP_006347758.1| - 0.00053 20.3 0.5 1.1 9.6 0.6 2.7 2 0 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|389845519|ref|YP_006347758.1| - 0.0012 18.6 0.0 0.0067 16.2 0.0 2.3 2 1 1 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.6 gi|389845519|ref|YP_006347758.1| - 0.0032 17.5 0.0 0.013 15.5 0.0 2.1 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain DUF87 PF01935.17 gi|389845519|ref|YP_006347758.1| - 0.0067 16.5 0.0 0.029 14.5 0.0 2.2 2 0 0 2 2 2 1 Helicase HerA, central domain AAA PF00004.29 gi|389845519|ref|YP_006347758.1| - 0.047 14.1 0.1 7.1 7.1 0.0 3.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) RPN7 PF10602.9 gi|389845519|ref|YP_006347758.1| - 0.3 10.8 1.9 25 4.5 0.0 3.2 3 0 0 3 3 3 0 26S proteasome subunit RPN7 TauE PF01925.19 gi|389845520|ref|YP_006347759.1| - 1.7e-28 99.8 21.4 1.7e-28 99.8 21.4 1.8 1 1 1 2 2 2 2 Sulfite exporter TauE/SafE Usp PF00582.26 gi|389845521|ref|YP_006347760.1| - 2.9e-31 108.9 2.6 3.3e-31 108.7 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family SBD_N PF07005.11 gi|389845521|ref|YP_006347760.1| - 0.015 15.0 0.4 0.027 14.2 0.2 1.3 1 1 0 1 1 1 0 Sugar-binding N-terminal domain Ribonuc_red_lgC PF02867.15 gi|389845522|ref|YP_006347761.1| - 2.6e-179 597.1 0.0 3.1e-179 596.9 0.0 1.0 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|389845522|ref|YP_006347761.1| - 1.6e-21 76.1 0.1 4.2e-21 74.7 0.1 1.8 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_sm PF00268.21 gi|389845523|ref|YP_006347762.1| - 2e-82 276.8 0.0 3e-82 276.2 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain 4HBT PF03061.22 gi|389845524|ref|YP_006347763.1| - 7.6e-18 64.6 0.2 1.1e-17 64.2 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|389845524|ref|YP_006347763.1| - 7.7e-05 23.2 0.0 9.5e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT_3 PF13622.6 gi|389845524|ref|YP_006347763.1| - 0.0054 17.0 0.1 0.0067 16.7 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|389845524|ref|YP_006347763.1| - 0.0081 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain Acyl-ACP_TE PF01643.17 gi|389845524|ref|YP_006347763.1| - 0.21 10.9 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase Band_7 PF01145.25 gi|389845525|ref|YP_006347764.1| - 2.6e-35 122.0 1.7 2.6e-35 122.0 1.7 1.9 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|389845525|ref|YP_006347764.1| - 0.047 13.4 0.1 0.094 12.4 0.1 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family Trp_oprn_chp PF09534.10 gi|389845525|ref|YP_006347764.1| - 2.3 8.0 7.3 0.26 11.0 2.8 1.6 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF2839 PF10999.8 gi|662859279|ref|YP_006347765.2| - 7 7.1 8.8 0.37 11.2 3.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) 2_5_RNA_ligase2 PF13563.6 gi|389845528|ref|YP_006347767.1| - 1.6e-17 63.9 0.0 2e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|389845528|ref|YP_006347767.1| - 1.6e-08 34.6 0.0 0.0005 20.2 0.0 2.4 2 0 0 2 2 2 2 LigT like Phosphoesterase p450 PF00067.22 gi|389845529|ref|YP_006347768.1| - 1.3e-88 297.8 0.0 1.6e-88 297.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 PEMT PF04191.13 gi|389845530|ref|YP_006347769.1| - 1.7e-15 57.3 0.2 1.7e-15 57.3 0.2 2.1 2 1 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|389845530|ref|YP_006347769.1| - 3.6e-06 27.3 0.5 8.2e-06 26.2 0.1 1.9 1 1 1 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Steroid_dh PF02544.16 gi|389845530|ref|YP_006347769.1| - 0.0013 18.7 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase YfhO PF09586.10 gi|389845530|ref|YP_006347769.1| - 0.005 15.1 0.9 0.0052 15.1 0.9 1.1 1 0 0 1 1 1 1 Bacterial membrane protein YfhO Oxidored_q2 PF00420.24 gi|389845530|ref|YP_006347769.1| - 0.024 14.2 1.6 11 5.7 0.1 2.9 3 0 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PRA1 PF03208.19 gi|389845530|ref|YP_006347769.1| - 0.031 13.9 3.7 0.085 12.5 0.1 2.6 2 1 1 3 3 3 0 PRA1 family protein DPM2 PF07297.12 gi|389845530|ref|YP_006347769.1| - 0.68 10.3 0.0 0.68 10.3 0.0 2.9 3 1 0 3 3 3 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) Helicase_C_2 PF13307.6 gi|389845531|ref|YP_006347770.1| - 7.9e-33 114.0 0.0 2.3e-32 112.5 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|389845531|ref|YP_006347770.1| - 3.2e-19 69.2 0.0 7e-19 68.1 0.0 1.6 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|389845531|ref|YP_006347770.1| - 6.5e-09 35.8 0.4 3.8e-06 26.8 0.2 3.4 2 1 1 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|389845531|ref|YP_006347770.1| - 5.3e-08 33.1 0.1 1.7e-05 24.9 0.1 2.4 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|389845531|ref|YP_006347770.1| - 0.00063 19.2 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 KaiC TrwB_AAD_bind PF10412.9 gi|389845531|ref|YP_006347770.1| - 0.0017 17.3 0.1 0.0035 16.3 0.1 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|389845531|ref|YP_006347770.1| - 0.006 15.7 0.0 0.0099 15.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|389845531|ref|YP_006347770.1| - 0.0062 16.1 0.4 0.26 10.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|389845531|ref|YP_006347770.1| - 0.0098 15.2 0.6 0.86 8.8 0.1 2.4 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|389845531|ref|YP_006347770.1| - 0.011 15.2 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF3584 PF12128.8 gi|389845531|ref|YP_006347770.1| - 0.015 12.8 2.0 0.023 12.3 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|389845531|ref|YP_006347770.1| - 0.017 15.5 1.8 0.043 14.2 0.2 2.4 2 0 0 2 2 2 0 AAA ATPase domain Asparaginase_C PF17763.1 gi|389845531|ref|YP_006347770.1| - 0.019 15.2 0.1 0.059 13.6 0.1 1.8 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain AAA_22 PF13401.6 gi|389845531|ref|YP_006347770.1| - 0.036 14.4 2.8 0.12 12.7 0.8 2.5 1 1 1 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|389845531|ref|YP_006347770.1| - 0.049 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|389845531|ref|YP_006347770.1| - 0.067 12.7 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region HBB PF06777.11 gi|389845531|ref|YP_006347770.1| - 0.21 11.2 0.7 0.62 9.7 0.0 2.0 2 0 0 2 2 2 0 Helical and beta-bridge domain AAA PF00004.29 gi|389845531|ref|YP_006347770.1| - 0.24 11.8 3.1 6.6 7.2 0.8 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1440 PF07274.12 gi|389845532|ref|YP_006347771.1| - 0.00062 20.1 1.4 0.00062 20.1 1.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1440) YqhR PF11085.8 gi|389845532|ref|YP_006347771.1| - 0.018 15.0 4.6 0.025 14.5 4.6 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2613 PF11021.8 gi|389845532|ref|YP_006347771.1| - 0.068 13.3 0.3 0.068 13.3 0.3 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2613) DUF4282 PF14110.6 gi|389845532|ref|YP_006347771.1| - 0.61 10.9 12.8 1.3 9.9 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) OTCace_N PF02729.21 gi|389845533|ref|YP_006347772.1| - 7.1e-50 168.9 0.0 9.9e-50 168.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|389845533|ref|YP_006347772.1| - 2.6e-48 164.0 0.0 3.7e-48 163.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.28 gi|389845534|ref|YP_006347773.1| - 2.8e-27 95.8 0.1 4.3e-27 95.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|389845534|ref|YP_006347773.1| - 2.1e-05 24.4 0.0 3.7e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|389845534|ref|YP_006347773.1| - 0.028 14.1 0.1 0.1 12.3 0.1 1.9 1 1 0 1 1 1 0 Peptidase family M28 Aminotran_3 PF00202.21 gi|389845535|ref|YP_006347774.1| - 2.6e-112 375.5 0.1 3.4e-112 375.1 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|389845535|ref|YP_006347774.1| - 0.026 13.0 0.0 0.1 11.1 0.0 1.7 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme AA_kinase PF00696.28 gi|389845536|ref|YP_006347775.1| - 1.7e-33 116.2 2.6 2.3e-33 115.8 2.6 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|389845537|ref|YP_006347776.1| - 4.5e-26 91.7 0.0 7.7e-26 90.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|389845537|ref|YP_006347776.1| - 2.5e-06 27.7 0.0 1.2e-05 25.5 0.0 2.0 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|389845537|ref|YP_006347776.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|389845537|ref|YP_006347776.1| - 0.16 12.1 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.11 gi|389845538|ref|YP_006347777.1| - 1.3e-25 90.1 0.0 1.8e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|389845538|ref|YP_006347777.1| - 1.6e-10 40.6 0.0 3.3e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|389845538|ref|YP_006347777.1| - 1.3e-08 35.1 0.0 2e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|389845538|ref|YP_006347777.1| - 1.3e-06 28.1 0.2 1.6e-05 24.6 0.0 2.4 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|389845538|ref|YP_006347777.1| - 1.9e-06 27.6 0.0 3.9e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|389845538|ref|YP_006347777.1| - 2.8e-05 23.7 0.0 0.00014 21.4 0.0 2.1 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|389845538|ref|YP_006347777.1| - 0.0058 15.9 0.0 0.056 12.7 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|389845538|ref|YP_006347777.1| - 0.14 11.7 0.0 0.74 9.4 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain Lyase_1 PF00206.20 gi|389845540|ref|YP_006347779.1| - 4.8e-56 190.4 0.0 9.5e-56 189.5 0.0 1.5 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|389845540|ref|YP_006347779.1| - 1.7e-15 57.5 2.4 1.7e-15 57.5 2.4 2.7 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal DUF2564 PF10819.8 gi|389845540|ref|YP_006347779.1| - 0.65 10.4 3.8 2.2 8.7 3.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2564) Arginosuc_synth PF00764.19 gi|389845541|ref|YP_006347780.1| - 1.8e-147 491.7 0.0 2.1e-147 491.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|389845541|ref|YP_006347780.1| - 3.1e-05 23.6 0.0 6.2e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|389845541|ref|YP_006347780.1| - 0.0014 17.8 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|389845541|ref|YP_006347780.1| - 0.0025 16.7 0.0 0.0037 16.1 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|389845541|ref|YP_006347780.1| - 0.0065 16.2 0.2 0.016 14.9 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase Na_Ca_ex PF01699.24 gi|389845542|ref|YP_006347781.1| - 1.2e-26 93.5 33.9 2.7e-15 56.6 10.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_H_Exchanger PF00999.21 gi|389845543|ref|YP_006347782.1| - 2e-49 168.4 45.2 2.5e-49 168.1 45.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|389845544|ref|YP_006347783.1| - 3.1e-17 62.1 0.5 7.3e-17 61.0 0.1 1.8 2 0 0 2 2 2 1 TrkA-C domain HGTP_anticodon PF03129.20 gi|389845546|ref|YP_006347785.1| - 1e-23 83.2 0.2 2.7e-23 81.9 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|389845546|ref|YP_006347785.1| - 8.7e-09 35.6 0.0 5.2e-07 29.8 0.1 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|389845546|ref|YP_006347785.1| - 0.11 11.9 0.8 1.1 8.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|389845546|ref|YP_006347785.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif zinc_ribbon_2 PF13240.6 gi|389845546|ref|YP_006347785.1| - 0.84 9.4 2.5 2.6 7.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF348 PF03990.14 gi|389845546|ref|YP_006347785.1| - 8.9 6.2 8.2 7.8 6.3 1.4 3.8 4 0 0 4 4 4 0 G5-linked-Ubiquitin-like domain CBS PF00571.28 gi|389845547|ref|YP_006347786.1| - 5.9e-30 103.5 13.8 9.9e-10 38.7 0.7 4.2 4 0 0 4 4 4 4 CBS domain TusA PF01206.17 gi|389845547|ref|YP_006347786.1| - 0.022 14.6 0.0 0.066 13.0 0.0 1.9 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF3253 PF11625.8 gi|389845548|ref|YP_006347787.1| - 0.14 12.4 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) ABC_tran PF00005.27 gi|389845550|ref|YP_006347789.1| - 2.7e-35 121.9 0.1 9.9e-35 120.0 0.0 1.9 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|389845550|ref|YP_006347789.1| - 1.6e-16 60.6 0.1 3.2e-16 59.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389845550|ref|YP_006347789.1| - 6.1e-06 26.3 0.3 0.0098 15.7 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389845550|ref|YP_006347789.1| - 2.3e-05 24.0 0.0 4.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389845550|ref|YP_006347789.1| - 0.00011 22.5 0.4 0.00057 20.2 0.3 2.2 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|389845550|ref|YP_006347789.1| - 0.0022 17.9 0.3 0.0038 17.2 0.3 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_5 PF07728.14 gi|389845550|ref|YP_006347789.1| - 0.0095 15.9 0.2 1.2 9.1 0.1 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|389845550|ref|YP_006347789.1| - 0.038 13.7 0.4 7.7 6.2 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.6 gi|389845550|ref|YP_006347789.1| - 0.072 12.8 0.3 0.14 11.9 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|389845550|ref|YP_006347789.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 gi|389845550|ref|YP_006347789.1| - 0.11 12.0 0.0 5.4 6.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|389845550|ref|YP_006347789.1| - 0.12 12.8 3.0 0.12 12.8 1.1 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|389845550|ref|YP_006347789.1| - 0.13 12.5 0.3 0.23 11.6 0.3 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|389845550|ref|YP_006347789.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|389845550|ref|YP_006347789.1| - 0.17 12.3 0.0 1.4 9.4 0.1 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|389845550|ref|YP_006347789.1| - 0.3 11.3 0.8 2.1 8.6 0.1 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|389845551|ref|YP_006347790.1| - 2.7e-30 105.7 0.0 3.9e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389845551|ref|YP_006347790.1| - 1.4e-18 67.1 0.4 3.1e-18 66.1 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389845551|ref|YP_006347790.1| - 2e-07 31.2 0.3 2.7e-06 27.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389845551|ref|YP_006347790.1| - 0.00027 20.5 0.0 0.00065 19.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389845551|ref|YP_006347790.1| - 0.008 16.5 0.8 0.2 11.9 0.8 2.2 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 gi|389845551|ref|YP_006347790.1| - 0.027 14.1 0.0 0.036 13.7 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.6 gi|389845551|ref|YP_006347790.1| - 0.075 13.4 0.4 0.15 12.4 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain Sigma54_activat PF00158.26 gi|389845551|ref|YP_006347790.1| - 0.082 12.6 0.1 0.68 9.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|389845551|ref|YP_006347790.1| - 0.094 12.8 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|389845551|ref|YP_006347790.1| - 0.16 11.7 0.1 0.3 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|389845552|ref|YP_006347791.1| - 1.2e-15 57.7 15.6 1.2e-15 57.7 15.6 2.2 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389845552|ref|YP_006347791.1| - 2.3e-06 27.5 0.0 2.3e-06 27.5 0.0 4.5 4 0 0 4 4 4 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|389845553|ref|YP_006347792.1| - 5.3e-34 117.6 10.3 5.3e-34 117.6 10.3 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|389845554|ref|YP_006347793.1| - 3e-70 237.1 3.2 4.5e-70 236.5 3.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389845554|ref|YP_006347793.1| - 5.3e-06 26.1 9.2 5.3e-06 26.1 9.2 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF296 PF03479.15 gi|389845556|ref|YP_006347795.1| - 1.6e-19 70.2 0.0 1.9e-19 70.0 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain CAP59_mtransfer PF11735.8 gi|389845556|ref|YP_006347795.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 PolC_DP2 PF03833.13 gi|389845557|ref|YP_006347796.1| - 0 1329.1 0.0 0 1327.5 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.6 gi|389845557|ref|YP_006347796.1| - 2.2e-12 47.1 0.0 1.2e-11 44.8 0.0 2.2 2 0 0 2 2 2 1 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|389845557|ref|YP_006347796.1| - 7.9e-10 38.8 0.0 1.6e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Intein splicing domain Phage_CI_repr PF07022.13 gi|389845557|ref|YP_006347796.1| - 0.0006 19.8 0.0 0.002 18.2 0.0 1.8 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_17 PF12728.7 gi|389845557|ref|YP_006347796.1| - 0.056 13.6 0.0 0.19 12.0 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|389845557|ref|YP_006347796.1| - 0.17 11.8 0.0 0.46 10.4 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Nop10p PF04135.12 gi|389845557|ref|YP_006347796.1| - 0.21 11.7 0.9 1.1 9.4 0.9 2.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family BUD22 PF09073.10 gi|389845557|ref|YP_006347796.1| - 0.37 10.1 3.7 0.57 9.5 2.5 1.8 2 0 0 2 2 2 0 BUD22 Sigma70_ner PF04546.13 gi|389845557|ref|YP_006347796.1| - 0.66 9.8 7.4 1.9 8.4 7.4 1.7 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF1707 PF08044.11 gi|389845557|ref|YP_006347796.1| - 0.74 9.9 3.9 6.2 7.0 0.4 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) DZR PF12773.7 gi|389845557|ref|YP_006347796.1| - 2.1 8.5 16.6 9 6.4 0.5 3.0 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|389845557|ref|YP_006347796.1| - 3.5 7.7 12.3 15 5.6 0.1 2.8 2 1 0 2 2 2 0 zinc-ribbons HypA PF01155.19 gi|389845557|ref|YP_006347796.1| - 4.9 7.2 15.3 2.8 8.0 0.5 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TrkH PF02386.16 gi|389845558|ref|YP_006347797.1| - 6.3e-75 252.5 19.2 1e-73 248.6 19.2 2.0 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|389845559|ref|YP_006347798.1| - 3e-28 98.4 0.9 5.1e-28 97.7 0.9 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|389845559|ref|YP_006347798.1| - 1.4e-14 53.7 0.7 1.4e-13 50.5 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|389845559|ref|YP_006347798.1| - 6.9e-07 29.8 1.2 1.4e-06 28.8 0.3 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|389845559|ref|YP_006347798.1| - 8.2e-06 26.1 0.3 1.4e-05 25.4 0.3 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|389845559|ref|YP_006347798.1| - 0.00018 22.0 0.0 0.0075 16.8 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|389845559|ref|YP_006347798.1| - 0.00025 21.1 0.1 0.00044 20.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|389845559|ref|YP_006347798.1| - 0.00038 20.4 0.2 0.00055 19.9 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|389845559|ref|YP_006347798.1| - 0.00052 20.5 0.1 0.001 19.6 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 gi|389845559|ref|YP_006347798.1| - 0.0011 18.3 0.6 0.0023 17.3 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|389845559|ref|YP_006347798.1| - 0.0016 18.0 0.8 0.027 14.1 0.1 2.2 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|389845559|ref|YP_006347798.1| - 0.0018 18.2 1.7 0.0051 16.7 1.0 1.9 1 1 1 2 2 2 1 NAD(P)H-binding Peripla_BP_3 PF13377.6 gi|389845559|ref|YP_006347798.1| - 0.0025 18.1 0.2 0.0044 17.4 0.2 1.4 1 0 0 1 1 1 1 Periplasmic binding protein-like domain NAD_binding_2 PF03446.15 gi|389845559|ref|YP_006347798.1| - 0.0033 17.6 0.0 0.0066 16.6 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.26 gi|389845559|ref|YP_006347798.1| - 0.0041 17.1 0.2 0.099 12.6 0.2 2.3 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_7 PF13241.6 gi|389845559|ref|YP_006347798.1| - 0.0043 17.5 0.3 0.012 16.0 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding NmrA PF05368.13 gi|389845559|ref|YP_006347798.1| - 0.0076 15.8 0.3 0.017 14.7 0.1 1.8 2 0 0 2 2 2 1 NmrA-like family GFO_IDH_MocA PF01408.22 gi|389845559|ref|YP_006347798.1| - 0.0098 16.7 0.2 0.034 15.0 0.2 2.0 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|389845559|ref|YP_006347798.1| - 0.013 14.8 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|389845559|ref|YP_006347798.1| - 0.017 15.8 0.2 0.04 14.6 0.2 1.7 1 0 0 1 1 1 0 PglD N-terminal domain adh_short PF00106.25 gi|389845559|ref|YP_006347798.1| - 0.12 11.8 0.3 0.2 11.1 0.3 1.5 1 0 0 1 1 1 0 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389845559|ref|YP_006347798.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DraK_HK_N PF18092.1 gi|389845559|ref|YP_006347798.1| - 0.93 10.0 4.3 7.8 7.0 1.0 2.4 2 0 0 2 2 2 0 DraK Histidine Kinase N-terminal domain AA_permease_2 PF13520.6 gi|389845560|ref|YP_006347799.1| - 2.5e-57 194.6 47.3 3.9e-57 194.0 47.3 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389845560|ref|YP_006347799.1| - 2.6e-42 145.0 45.4 4.2e-42 144.4 45.4 1.3 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|389845560|ref|YP_006347799.1| - 2.8e-26 92.7 11.9 2.2e-17 63.9 2.5 2.4 2 0 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|389845560|ref|YP_006347799.1| - 1.8e-06 27.0 13.3 1.8e-06 27.0 13.3 2.5 2 1 0 2 2 2 1 Spore germination protein Serinc PF03348.15 gi|389845560|ref|YP_006347799.1| - 0.0004 19.4 2.4 0.00087 18.3 2.4 1.5 1 0 0 1 1 1 1 Serine incorporator (Serinc) Usp PF00582.26 gi|389845562|ref|YP_006347801.1| - 7.4e-08 33.0 1.3 9.9e-08 32.6 1.3 1.2 1 0 0 1 1 1 1 Universal stress protein family HTH_24 PF13412.6 gi|389845563|ref|YP_006347802.1| - 4.6e-12 45.3 0.0 8.5e-12 44.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrkA_C PF02080.21 gi|389845563|ref|YP_006347802.1| - 6.1e-10 38.8 0.2 1.3e-09 37.7 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain HTH_AsnC-type PF13404.6 gi|389845563|ref|YP_006347802.1| - 2.3e-09 36.9 0.1 4.1e-09 36.1 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|389845563|ref|YP_006347802.1| - 1.5e-07 31.3 0.0 5e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|389845563|ref|YP_006347802.1| - 6.9e-06 25.8 0.0 1.4e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|389845563|ref|YP_006347802.1| - 9.8e-06 25.5 0.0 2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389845563|ref|YP_006347802.1| - 2.4e-05 24.1 0.0 5.5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|389845563|ref|YP_006347802.1| - 3.7e-05 23.4 0.0 8.9e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|389845563|ref|YP_006347802.1| - 6.2e-05 23.0 0.1 0.00035 20.6 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|389845563|ref|YP_006347802.1| - 0.00012 21.9 0.0 0.00042 20.2 0.0 1.8 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|389845563|ref|YP_006347802.1| - 0.00021 21.4 0.0 0.00046 20.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|389845563|ref|YP_006347802.1| - 0.0012 19.2 0.0 0.0026 18.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|389845563|ref|YP_006347802.1| - 0.0016 18.2 0.0 0.0032 17.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|389845563|ref|YP_006347802.1| - 0.0017 18.1 0.0 0.0034 17.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|389845563|ref|YP_006347802.1| - 0.0033 17.1 0.0 0.0095 15.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|389845563|ref|YP_006347802.1| - 0.0039 16.6 0.0 0.0076 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|389845563|ref|YP_006347802.1| - 0.0051 17.3 0.0 0.28 11.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|389845563|ref|YP_006347802.1| - 0.0068 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|389845563|ref|YP_006347802.1| - 0.0086 15.9 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389845563|ref|YP_006347802.1| - 0.021 14.5 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_30 PF13556.6 gi|389845563|ref|YP_006347802.1| - 0.031 14.1 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_CodY PF08222.11 gi|389845563|ref|YP_006347802.1| - 0.033 13.8 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389845563|ref|YP_006347802.1| - 0.041 13.9 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|389845563|ref|YP_006347802.1| - 0.045 13.7 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family FaeA PF04703.12 gi|389845563|ref|YP_006347802.1| - 0.089 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein AsnC_trans_reg PF01037.21 gi|389845563|ref|YP_006347802.1| - 0.094 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain HrcA_DNA-bdg PF03444.15 gi|389845563|ref|YP_006347802.1| - 0.096 12.4 0.0 0.33 10.6 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PaaX PF07848.12 gi|389845563|ref|YP_006347802.1| - 0.099 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein FUR PF01475.19 gi|389845563|ref|YP_006347802.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.6 gi|389845563|ref|YP_006347802.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|389845563|ref|YP_006347802.1| - 0.19 11.6 0.0 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Rubredoxin_2 PF18073.1 gi|389845566|ref|YP_006347805.1| - 0.00024 20.8 0.8 0.02 14.6 0.0 2.3 2 0 0 2 2 2 1 Rubredoxin metal binding domain HypA PF01155.19 gi|389845566|ref|YP_006347805.1| - 0.00087 19.3 0.0 0.00099 19.1 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|389845566|ref|YP_006347805.1| - 0.009 15.5 1.2 2.2 7.9 0.2 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding HalOD2 PF18547.1 gi|389845566|ref|YP_006347805.1| - 0.014 15.2 4.0 0.97 9.4 0.1 2.7 3 0 0 3 3 3 0 Halobacterial output domain 2 DZR PF12773.7 gi|389845566|ref|YP_006347805.1| - 0.053 13.6 1.2 0.1 12.6 1.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|389845566|ref|YP_006347805.1| - 0.068 13.1 0.3 7.1 6.7 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain NRDD PF13597.6 gi|389845566|ref|YP_006347805.1| - 0.076 11.8 0.2 0.093 11.5 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_2 PF13240.6 gi|389845566|ref|YP_006347805.1| - 0.077 12.7 4.6 0.62 9.9 4.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PRC PF05239.16 gi|389845566|ref|YP_006347805.1| - 0.094 12.8 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 PRC-barrel domain Zn-ribbon_8 PF09723.10 gi|389845566|ref|YP_006347805.1| - 0.12 12.6 4.2 0.24 11.5 3.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|389845566|ref|YP_006347805.1| - 0.13 12.3 0.5 9.6 6.2 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|389845566|ref|YP_006347805.1| - 0.16 11.9 1.1 12 5.9 0.2 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin PF00301.20 gi|389845566|ref|YP_006347805.1| - 0.2 11.7 3.1 3.7 7.7 0.5 2.3 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|389845566|ref|YP_006347805.1| - 0.24 10.9 5.8 0.79 9.2 5.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|389845566|ref|YP_006347805.1| - 0.43 11.0 2.2 3.8 8.0 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-NADH-PPase PF09297.11 gi|389845566|ref|YP_006347805.1| - 1.7 8.4 5.6 11 5.8 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain ApbA_C PF08546.11 gi|389845567|ref|YP_006347806.1| - 8.2e-35 119.7 0.7 8.2e-35 119.7 0.7 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|389845567|ref|YP_006347806.1| - 7.2e-28 97.1 0.2 1.1e-27 96.6 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|389845567|ref|YP_006347806.1| - 0.081 13.5 1.5 0.22 12.1 0.3 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|389845567|ref|YP_006347806.1| - 0.12 12.6 1.2 0.23 11.7 0.2 2.1 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Sulfatase PF00884.23 gi|389845568|ref|YP_006347807.1| - 4.9e-47 160.8 0.6 7.6e-47 160.2 0.6 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|389845568|ref|YP_006347807.1| - 6.6e-11 42.4 0.3 1.5e-05 24.8 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase CCDC144C PF14915.6 gi|389845568|ref|YP_006347807.1| - 0.03 13.5 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region DUF1501 PF07394.12 gi|389845568|ref|YP_006347807.1| - 0.066 12.3 0.1 0.25 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|389845568|ref|YP_006347807.1| - 0.072 11.7 0.0 0.096 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) NifU PF01106.17 gi|389845569|ref|YP_006347808.1| - 8.5e-14 51.5 0.0 1.2e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain Prok_Ub PF14454.6 gi|389845570|ref|YP_006347809.1| - 0.13 11.9 0.0 0.35 10.6 0.0 1.8 2 0 0 2 2 2 0 Prokaryotic Ubiquitin Snf7 PF03357.21 gi|389845570|ref|YP_006347809.1| - 2.4 7.7 5.0 30 4.1 5.1 2.0 1 1 0 1 1 1 0 Snf7 DoxX PF07681.12 gi|389845571|ref|YP_006347810.1| - 3.3e-13 50.0 11.9 3.3e-13 50.0 11.9 1.6 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.6 gi|389845571|ref|YP_006347810.1| - 0.00082 19.5 12.5 0.001 19.1 12.5 1.2 1 0 0 1 1 1 1 DoxX-like family DoxD PF04173.13 gi|389845571|ref|YP_006347810.1| - 0.0012 18.8 1.2 0.0015 18.5 1.2 1.2 1 0 0 1 1 1 1 TQO small subunit DoxD Flp_Fap PF04964.14 gi|389845571|ref|YP_006347810.1| - 0.57 10.1 3.5 0.7 9.8 0.1 2.3 2 0 0 2 2 2 0 Flp/Fap pilin component RHH_1 PF01402.21 gi|389845572|ref|YP_006347811.1| - 0.17 11.9 2.9 0.21 11.6 0.8 2.1 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family Glyoxalase PF00903.25 gi|389845573|ref|YP_006347812.1| - 2e-12 47.4 0.0 4e-12 46.4 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|389845573|ref|YP_006347812.1| - 0.0028 18.4 0.1 0.01 16.6 0.1 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|389845573|ref|YP_006347812.1| - 0.0072 16.6 0.0 0.0099 16.1 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|389845573|ref|YP_006347812.1| - 0.0082 16.3 0.0 0.012 15.7 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|389845573|ref|YP_006347812.1| - 0.2 11.6 0.0 13 5.7 0.0 2.2 2 0 0 2 2 2 0 Glyoxalase-like domain DHHA1 PF02272.19 gi|662859280|ref|YP_006347813.2| - 1e-19 71.3 1.5 3.8e-19 69.5 1.3 1.9 2 0 0 2 2 2 1 DHHA1 domain MFS_1 PF07690.16 gi|389845575|ref|YP_006347814.1| - 7.2e-28 97.5 57.9 2.7e-27 95.6 43.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily HEM4 PF02602.15 gi|389845576|ref|YP_006347815.1| - 3.7e-41 141.0 0.1 4.4e-41 140.8 0.1 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DAHP_snth_FXD PF18152.1 gi|389845576|ref|YP_006347815.1| - 0.001 18.8 0.0 0.013 15.3 0.0 2.7 3 0 0 3 3 3 1 DAHP synthase ferredoxin-like domain TP_methylase PF00590.20 gi|389845577|ref|YP_006347816.1| - 5.2e-51 173.6 0.2 6.5e-51 173.3 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.20 gi|662859281|ref|YP_006347817.2| - 1.7e-66 223.7 0.4 4.1e-52 176.7 0.2 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|662859281|ref|YP_006347817.2| - 1.6e-09 38.0 0.0 4.6e-09 36.5 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DUF444 PF04285.12 gi|662859281|ref|YP_006347817.2| - 0.034 13.2 0.4 0.05 12.7 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF444) DUF4229 PF14012.6 gi|389845579|ref|YP_006347818.1| - 0.54 10.4 8.2 2.7 8.1 8.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4229) Aminotran_3 PF00202.21 gi|389845580|ref|YP_006347819.1| - 3e-66 223.8 0.0 5.6e-66 222.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|389845580|ref|YP_006347819.1| - 0.0003 20.1 0.0 0.00051 19.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II CPBP PF02517.16 gi|389845581|ref|YP_006347820.1| - 6.3e-07 29.7 6.1 1.5e-06 28.5 6.1 1.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease P-II PF00543.22 gi|389845582|ref|YP_006347821.1| - 4.9e-34 117.0 0.1 5.7e-34 116.8 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|389845583|ref|YP_006347822.1| - 1.2e-94 317.3 41.2 1.3e-94 317.1 41.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|389845583|ref|YP_006347822.1| - 0.026 14.4 0.8 0.026 14.4 0.8 3.4 3 0 0 3 3 3 0 Photosystem II protein Y (PsbY) P-II PF00543.22 gi|389845584|ref|YP_006347823.1| - 7.2e-34 116.5 0.2 8.4e-34 116.2 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|389845585|ref|YP_006347824.1| - 1.9e-96 323.2 42.6 2.2e-96 323.0 42.6 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|389845585|ref|YP_006347824.1| - 0.0018 18.2 0.8 0.018 14.9 0.2 2.7 2 0 0 2 2 2 1 Photosystem II protein Y (PsbY) ALAD PF00490.21 gi|389845586|ref|YP_006347825.1| - 1.2e-140 468.2 0.1 1.4e-140 468.0 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase SNARE_assoc PF09335.11 gi|389845587|ref|YP_006347826.1| - 1e-09 38.9 4.1 1.7e-09 38.2 4.1 1.4 1 1 0 1 1 1 1 SNARE associated Golgi protein RseC_MucC PF04246.12 gi|389845587|ref|YP_006347826.1| - 3.3 7.6 5.1 7.4 6.5 5.1 1.6 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC PyrI_C PF02748.15 gi|389845588|ref|YP_006347827.1| - 0.82 9.6 3.6 0.85 9.6 1.6 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain PHP PF02811.19 gi|389845589|ref|YP_006347828.1| - 2.7e-05 24.5 0.0 2.7e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|389845589|ref|YP_006347828.1| - 0.0066 16.2 0.1 0.015 15.0 0.1 1.6 1 0 0 1 1 1 1 PHP-associated DUF3337 PF11816.8 gi|389845589|ref|YP_006347828.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) IRF-2BP1_2 PF11261.8 gi|662859282|ref|YP_006347831.2| - 0.2 11.2 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger NAD_binding_10 PF13460.6 gi|389845594|ref|YP_006347833.1| - 3.2e-23 82.6 0.1 5e-23 81.9 0.1 1.4 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|389845594|ref|YP_006347833.1| - 1.1e-14 54.6 0.0 1.5e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|389845594|ref|YP_006347833.1| - 1.6e-14 54.0 0.0 2.9e-13 49.8 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389845594|ref|YP_006347833.1| - 1.7e-08 33.8 0.0 3.1e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|389845594|ref|YP_006347833.1| - 4.2e-06 26.4 0.0 7.9e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|389845594|ref|YP_006347833.1| - 1.6e-05 24.2 0.0 2.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|389845594|ref|YP_006347833.1| - 2.7e-05 23.4 0.0 0.0048 16.0 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain TrkA_N PF02254.18 gi|389845594|ref|YP_006347833.1| - 0.0035 17.6 0.9 0.082 13.2 0.1 2.7 3 0 0 3 3 3 1 TrkA-N domain PAC2 PF09754.9 gi|389845594|ref|YP_006347833.1| - 0.013 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 PAC2 family adh_short PF00106.25 gi|389845594|ref|YP_006347833.1| - 0.034 13.6 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|389845594|ref|YP_006347833.1| - 0.1 12.7 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_2 PF02719.15 gi|389845594|ref|YP_006347833.1| - 0.14 11.3 0.0 0.93 8.6 0.0 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Glyco_transf_4 PF13439.6 gi|389845594|ref|YP_006347833.1| - 0.14 12.2 0.5 0.28 11.2 0.2 1.7 1 1 0 1 1 1 0 Glycosyltransferase Family 4 KR PF08659.10 gi|389845594|ref|YP_006347833.1| - 0.2 11.5 0.0 0.61 10.0 0.0 1.8 1 1 0 1 1 1 0 KR domain Glyco_trans_4_4 PF13579.6 gi|389845594|ref|YP_006347833.1| - 0.22 12.0 3.6 1.7 9.1 3.6 2.2 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain CxxCxxCC PF03692.15 gi|389845595|ref|YP_006347834.1| - 2.2e-05 25.1 0.3 0.017 15.8 0.0 2.2 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain zf-P11 PF03854.14 gi|662859283|ref|YP_006347835.2| - 0.019 14.6 0.4 0.14 11.8 0.0 2.0 2 0 0 2 2 2 0 P-11 zinc finger DUF4428 PF14471.6 gi|662859283|ref|YP_006347835.2| - 0.086 12.8 0.1 9.9 6.2 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Helicase_C_2 PF13307.6 gi|389845597|ref|YP_006347836.1| - 4.8e-22 78.9 0.0 8e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|389845597|ref|YP_006347836.1| - 4.6e-06 26.4 0.0 7.1e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|389845597|ref|YP_006347836.1| - 2.5e-05 24.3 0.0 0.009 16.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|389845597|ref|YP_006347836.1| - 0.00011 22.5 0.1 0.00081 19.7 0.0 2.3 2 1 0 2 2 1 1 AAA domain DEAD PF00270.29 gi|389845597|ref|YP_006347836.1| - 0.00014 21.7 0.0 0.072 12.9 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|389845597|ref|YP_006347836.1| - 0.00044 20.0 0.4 0.45 10.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|389845597|ref|YP_006347836.1| - 0.0027 18.1 0.3 0.012 16.0 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|389845597|ref|YP_006347836.1| - 0.0089 15.6 0.3 0.22 11.1 0.0 3.1 4 0 0 4 4 4 1 AAA domain DUF2075 PF09848.9 gi|389845597|ref|YP_006347836.1| - 0.026 13.8 0.0 4.2 6.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|389845597|ref|YP_006347836.1| - 0.039 13.4 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.29 gi|389845597|ref|YP_006347836.1| - 0.049 14.0 0.0 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|389845597|ref|YP_006347836.1| - 0.057 12.8 0.0 0.09 12.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DXP_redisom_C PF08436.12 gi|389845597|ref|YP_006347836.1| - 0.077 13.2 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IstB_IS21 PF01695.17 gi|389845597|ref|YP_006347836.1| - 0.12 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein OrsD PF12013.8 gi|389845597|ref|YP_006347836.1| - 0.13 12.7 0.1 0.29 11.6 0.1 1.5 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D DUF1992 PF09350.10 gi|389845597|ref|YP_006347836.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1992) AAA_19 PF13245.6 gi|389845597|ref|YP_006347836.1| - 0.17 12.2 0.0 0.4 11.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain UPF0175 PF03683.13 gi|389845598|ref|YP_006347837.1| - 1.5e-07 31.0 0.0 1.7e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_psq PF05225.16 gi|389845598|ref|YP_006347837.1| - 0.031 14.0 0.0 0.071 12.9 0.1 1.6 2 0 0 2 2 2 0 helix-turn-helix, Psq domain DUF2937 PF11157.8 gi|389845598|ref|YP_006347837.1| - 0.1 12.3 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) NMD3 PF04981.13 gi|389845599|ref|YP_006347838.1| - 6.2e-61 206.0 0.0 7.5e-61 205.7 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|389845599|ref|YP_006347838.1| - 0.0029 17.9 0.0 0.28 11.5 0.0 3.0 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|389845599|ref|YP_006347838.1| - 0.0053 16.8 4.6 0.065 13.3 1.5 3.0 2 1 0 2 2 2 1 Double zinc ribbon DUF2703 PF10865.8 gi|389845599|ref|YP_006347838.1| - 0.0056 16.9 0.7 0.027 14.7 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF2703) GFA PF04828.14 gi|389845599|ref|YP_006347838.1| - 0.021 15.1 0.8 19 5.7 0.0 3.4 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.6 gi|389845599|ref|YP_006347838.1| - 0.064 13.0 5.2 0.85 9.4 0.2 3.5 3 0 0 3 3 3 0 zinc-ribbon domain AARP2CN PF08142.12 gi|389845599|ref|YP_006347838.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 AARP2CN (NUC121) domain Nudix_N_2 PF14803.6 gi|389845599|ref|YP_006347838.1| - 0.2 11.6 16.0 2.2 8.3 0.2 3.8 3 1 0 3 3 3 0 Nudix N-terminal FYVE PF01363.21 gi|389845599|ref|YP_006347838.1| - 5.2 7.3 9.0 1.1 9.5 0.4 2.8 3 1 0 3 3 3 0 FYVE zinc finger zf-ribbon_3 PF13248.6 gi|389845599|ref|YP_006347838.1| - 7 6.2 10.2 6.5 6.3 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Pribosyltran PF00156.27 gi|389845600|ref|YP_006347839.1| - 1.7e-28 99.2 0.0 2.2e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389845600|ref|YP_006347839.1| - 0.0021 17.6 0.0 0.0041 16.6 0.0 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|389845600|ref|YP_006347839.1| - 0.066 12.7 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase PALP PF00291.25 gi|389845600|ref|YP_006347839.1| - 0.12 11.8 1.0 0.28 10.6 0.2 1.9 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Epimerase PF01370.21 gi|389845601|ref|YP_006347840.1| - 3.6e-28 98.7 0.0 7.9e-27 94.3 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389845601|ref|YP_006347840.1| - 6.8e-19 68.4 0.0 7.6e-18 65.0 0.0 2.1 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|389845601|ref|YP_006347840.1| - 2e-11 43.5 0.1 1.4e-10 40.8 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|389845601|ref|YP_006347840.1| - 2.1e-08 34.2 0.1 3.2e-08 33.7 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|389845601|ref|YP_006347840.1| - 1.1e-06 27.9 0.0 1.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|389845601|ref|YP_006347840.1| - 1.6e-05 24.2 0.0 2.7e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|389845601|ref|YP_006347840.1| - 0.0056 15.9 0.0 0.056 12.6 0.1 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Peptidase_M48 PF01435.18 gi|662859284|ref|YP_006347841.2| - 2.7e-42 144.8 0.7 3.3e-42 144.5 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|662859284|ref|YP_006347841.2| - 1.9e-07 30.6 0.4 6.8e-06 25.5 0.0 2.2 2 1 0 2 2 2 1 BlaR1 peptidase M56 SID-1_RNA_chan PF13965.6 gi|662859284|ref|YP_006347841.2| - 0.028 12.8 0.6 0.14 10.5 0.2 1.9 2 0 0 2 2 2 0 dsRNA-gated channel SID-1 VKOR PF07884.14 gi|662859284|ref|YP_006347841.2| - 0.73 10.0 8.3 2.8 8.2 3.9 2.2 2 0 0 2 2 2 0 Vitamin K epoxide reductase family DUF3007 PF11460.8 gi|662859284|ref|YP_006347841.2| - 0.94 9.8 4.5 0.15 12.3 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) FA_desaturase PF00487.24 gi|662859284|ref|YP_006347841.2| - 3.2 7.5 6.6 6.7 6.5 1.5 2.6 2 1 1 3 3 3 0 Fatty acid desaturase SUR7 PF06687.12 gi|662859284|ref|YP_006347841.2| - 5 6.7 8.2 1.3e+02 2.1 8.2 2.1 1 1 0 1 1 1 0 SUR7/PalI family HemY_N PF07219.13 gi|662859284|ref|YP_006347841.2| - 7.6 6.8 6.9 7.3 6.8 0.1 2.9 2 1 0 2 2 2 0 HemY protein N-terminus APH PF01636.23 gi|389845603|ref|YP_006347842.1| - 1.7e-32 113.3 1.8 2.7e-32 112.6 1.8 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|389845603|ref|YP_006347842.1| - 0.0037 16.6 0.0 0.0052 16.1 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.11 gi|389845603|ref|YP_006347842.1| - 0.0038 16.2 0.0 0.0064 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) CdiI_2 PF18593.1 gi|389845604|ref|YP_006347843.1| - 0.019 15.6 0.1 0.046 14.4 0.1 1.6 2 0 0 2 2 2 0 CdiI immunity protein FUSC PF04632.12 gi|389845605|ref|YP_006347844.1| - 0.082 11.4 3.1 0.094 11.2 3.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Nicastrin PF05450.15 gi|389845605|ref|YP_006347844.1| - 0.1 12.1 0.4 0.11 12.0 0.4 1.1 1 0 0 1 1 1 0 Nicastrin Rad51 PF08423.11 gi|389845606|ref|YP_006347845.1| - 4.7e-70 235.8 0.0 2.2e-69 233.6 0.0 1.8 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|389845606|ref|YP_006347845.1| - 2.2e-11 44.2 0.0 5.7e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|389845606|ref|YP_006347845.1| - 3.5e-06 26.7 0.0 0.0072 15.8 0.0 2.5 1 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|389845606|ref|YP_006347845.1| - 3e-05 23.7 0.1 0.00038 20.2 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|389845606|ref|YP_006347845.1| - 5.4e-05 22.9 0.0 8.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|389845606|ref|YP_006347845.1| - 0.00031 20.8 0.0 0.00076 19.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|389845606|ref|YP_006347845.1| - 0.00036 20.7 0.0 0.00092 19.4 0.0 1.7 1 1 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|389845606|ref|YP_006347845.1| - 0.0011 18.7 0.1 0.0083 15.9 0.0 2.5 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda ATPase PF06745.13 gi|389845606|ref|YP_006347845.1| - 0.0025 17.2 0.1 0.0054 16.1 0.1 1.6 1 0 0 1 1 1 1 KaiC HHH_3 PF12836.7 gi|389845606|ref|YP_006347845.1| - 0.072 13.4 0.0 0.8 10.0 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|389845606|ref|YP_006347845.1| - 0.12 12.7 0.0 0.77 10.2 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|389845606|ref|YP_006347845.1| - 0.14 12.4 0.0 0.37 11.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) IMS_HHH PF11798.8 gi|389845606|ref|YP_006347845.1| - 0.15 12.5 0.0 0.93 9.9 0.0 2.4 2 0 0 2 2 2 0 IMS family HHH motif BAF PF02961.14 gi|389845606|ref|YP_006347845.1| - 0.2 12.1 0.0 0.54 10.7 0.0 1.7 1 0 0 1 1 1 0 Barrier to autointegration factor Pyr_redox_2 PF07992.14 gi|389845607|ref|YP_006347846.1| - 3e-23 82.5 0.0 6.7e-23 81.3 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|389845607|ref|YP_006347846.1| - 0.009 16.0 1.0 2.6 8.0 0.1 3.0 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|389845607|ref|YP_006347846.1| - 0.11 13.0 0.6 32 5.2 0.7 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|389845607|ref|YP_006347846.1| - 0.13 11.2 1.1 13 4.7 0.0 3.0 3 0 0 3 3 3 0 Lycopene cyclase protein DUF1641 PF07849.11 gi|389845608|ref|YP_006347847.1| - 3.3e-14 52.5 1.8 2.1e-12 46.7 0.3 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1641) NifU_N PF01592.16 gi|389845609|ref|YP_006347848.1| - 4.9e-27 94.6 0.0 5.9e-27 94.3 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Phage_TAC_7 PF10109.9 gi|389845609|ref|YP_006347848.1| - 0.039 14.1 0.1 0.074 13.2 0.1 1.5 1 1 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 DUF4567 PF15131.6 gi|389845609|ref|YP_006347848.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4567) Aminotran_5 PF00266.19 gi|389845610|ref|YP_006347849.1| - 1e-146 488.7 0.0 1.3e-146 488.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|389845610|ref|YP_006347849.1| - 5.7e-10 39.0 0.6 1.3e-09 37.9 0.7 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|389845610|ref|YP_006347849.1| - 5.1e-06 25.3 0.0 9e-06 24.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|389845610|ref|YP_006347849.1| - 2.9e-05 23.5 0.1 3.4e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|389845610|ref|YP_006347849.1| - 0.0052 15.5 0.0 0.013 14.2 0.0 1.5 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|389845610|ref|YP_006347849.1| - 0.0074 15.3 0.1 0.027 13.5 0.1 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase DUF424 PF04242.13 gi|389845611|ref|YP_006347850.1| - 3.9e-28 97.5 0.1 4.4e-28 97.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.28 gi|662859285|ref|YP_006347851.2| - 4.6e-24 83.2 3.5 4e-06 26.4 0.0 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|662859285|ref|YP_006347851.2| - 1.1e-22 78.3 11.3 1.5e-05 24.7 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|662859285|ref|YP_006347851.2| - 2.9e-19 69.4 19.7 5.8e-08 33.3 4.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|662859285|ref|YP_006347851.2| - 6.4e-17 60.3 1.4 0.026 14.7 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|662859285|ref|YP_006347851.2| - 1.4e-16 60.5 16.4 2.7e-11 43.6 3.4 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|662859285|ref|YP_006347851.2| - 1.6e-14 53.3 2.6 6e-05 22.6 0.0 4.8 3 1 2 5 5 5 3 TPR repeat TPR_9 PF13371.6 gi|662859285|ref|YP_006347851.2| - 6.9e-11 42.1 13.7 0.0011 19.0 5.6 3.9 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|662859285|ref|YP_006347851.2| - 7.7e-11 41.9 20.3 1.4e-05 25.5 1.0 5.1 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|662859285|ref|YP_006347851.2| - 4.3e-09 36.1 0.9 0.00019 21.6 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|662859285|ref|YP_006347851.2| - 3.4e-08 32.9 8.8 0.00063 19.6 0.1 4.4 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|662859285|ref|YP_006347851.2| - 1.1e-05 25.9 11.6 0.0042 17.6 0.1 3.7 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|662859285|ref|YP_006347851.2| - 1.3e-05 24.8 21.4 0.0025 17.6 0.2 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|662859285|ref|YP_006347851.2| - 0.00044 20.7 6.0 20 6.1 0.0 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|662859285|ref|YP_006347851.2| - 0.0005 20.4 0.8 0.0005 20.4 0.8 5.2 6 0 0 6 6 5 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|662859285|ref|YP_006347851.2| - 0.0027 17.8 9.9 4.5 7.4 0.6 4.0 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) ANAPC5 PF12862.7 gi|662859285|ref|YP_006347851.2| - 0.51 10.4 6.8 10 6.2 0.6 3.6 2 1 2 4 4 4 0 Anaphase-promoting complex subunit 5 Wzy_C_2 PF11846.8 gi|662859285|ref|YP_006347851.2| - 0.66 9.9 3.9 2.7 7.9 0.2 2.3 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal His_Phos_1 PF00300.22 gi|662859286|ref|YP_006347852.2| - 8.6e-24 84.3 0.2 1.1e-23 84.0 0.2 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Aminotran_MocR PF12897.7 gi|662859286|ref|YP_006347852.2| - 0.029 13.2 0.0 0.033 13.0 0.0 1.2 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase LigT_PEase PF02834.16 gi|389845614|ref|YP_006347853.1| - 6.5e-25 87.1 0.0 5.9e-12 45.6 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|389845614|ref|YP_006347853.1| - 1.7e-19 70.2 0.1 2e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|389845614|ref|YP_006347853.1| - 6e-07 29.6 0.0 7.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|389845614|ref|YP_006347853.1| - 0.015 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein EamA PF00892.20 gi|389845615|ref|YP_006347854.1| - 1.7e-36 125.4 32.1 6.2e-19 68.5 17.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|389845615|ref|YP_006347854.1| - 0.026 14.5 0.3 0.082 12.9 0.3 1.9 1 0 0 1 1 1 0 Putative transmembrane family 234 DUF3188 PF11384.8 gi|389845615|ref|YP_006347854.1| - 0.44 10.3 3.8 2.6 7.8 0.3 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Ribosomal_L39 PF00832.20 gi|389845616|ref|YP_006347855.1| - 1.3e-19 69.5 8.4 1.6e-19 69.3 8.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|389845617|ref|YP_006347856.1| - 3.4e-09 36.8 0.1 4.3e-09 36.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|389845618|ref|YP_006347857.1| - 1.5e-73 246.4 0.0 1.8e-73 246.2 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|662859287|ref|YP_006347858.2| - 1.3e-09 38.2 0.0 1.4e-09 38.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|389845620|ref|YP_006347859.1| - 1.5e-21 76.5 12.4 1.5e-21 76.5 12.4 2.2 1 1 0 1 1 1 1 Prefoldin subunit Spc7 PF08317.11 gi|389845620|ref|YP_006347859.1| - 1.5e-05 24.0 20.5 0.0018 17.3 2.5 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein CK2S PF15011.6 gi|389845620|ref|YP_006347859.1| - 0.00011 22.2 9.4 0.018 14.9 5.1 2.1 2 0 0 2 2 2 2 Casein Kinase 2 substrate HCMV_UL139 PF12507.8 gi|389845620|ref|YP_006347859.1| - 0.00022 21.6 5.8 0.13 12.6 3.1 2.1 2 0 0 2 2 2 2 Human Cytomegalovirus UL139 protein GAS PF13851.6 gi|389845620|ref|YP_006347859.1| - 0.0013 18.2 15.9 0.058 12.7 0.3 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DivIC PF04977.15 gi|389845620|ref|YP_006347859.1| - 0.0016 18.2 4.9 0.0016 18.2 4.9 3.2 2 1 1 3 3 2 2 Septum formation initiator YabA PF06156.13 gi|389845620|ref|YP_006347859.1| - 0.0021 18.7 12.3 0.23 12.1 0.2 2.2 2 0 0 2 2 2 2 Initiation control protein YabA Fib_alpha PF08702.10 gi|389845620|ref|YP_006347859.1| - 0.0031 17.7 13.6 0.064 13.4 0.5 2.2 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Spectrin PF00435.21 gi|389845620|ref|YP_006347859.1| - 0.0032 17.9 19.3 0.28 11.7 10.1 2.3 2 0 0 2 2 2 2 Spectrin repeat Tropomyosin_1 PF12718.7 gi|389845620|ref|YP_006347859.1| - 0.0037 17.4 23.4 0.034 14.3 3.8 2.6 2 1 1 3 3 3 1 Tropomyosin like CENP-F_leu_zip PF10473.9 gi|389845620|ref|YP_006347859.1| - 0.0038 17.3 19.3 0.088 12.8 2.8 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4337 PF14235.6 gi|389845620|ref|YP_006347859.1| - 0.0039 17.3 13.4 0.12 12.5 7.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) Prefoldin_2 PF01920.20 gi|389845620|ref|YP_006347859.1| - 0.005 16.8 7.4 0.005 16.8 7.4 3.6 1 1 2 3 3 2 2 Prefoldin subunit COG2 PF06148.11 gi|389845620|ref|YP_006347859.1| - 0.0055 16.8 10.2 0.048 13.8 0.4 2.2 2 0 0 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 bZIP_1 PF00170.21 gi|389845620|ref|YP_006347859.1| - 0.0056 16.8 8.2 0.3 11.2 0.4 2.7 2 0 0 2 2 2 1 bZIP transcription factor NPV_P10 PF05531.12 gi|389845620|ref|YP_006347859.1| - 0.0059 17.0 15.7 0.038 14.4 2.9 2.5 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Dor1 PF04124.12 gi|389845620|ref|YP_006347859.1| - 0.0068 15.1 10.1 0.011 14.4 3.3 2.0 2 0 0 2 2 2 1 Dor1-like family BLOC1_2 PF10046.9 gi|389845620|ref|YP_006347859.1| - 0.008 16.5 19.1 0.011 16.1 1.3 3.2 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 FapA PF03961.13 gi|389845620|ref|YP_006347859.1| - 0.0094 14.6 12.9 0.14 10.8 5.0 2.0 1 1 1 2 2 2 2 Flagellar Assembly Protein A TMF_TATA_bd PF12325.8 gi|389845620|ref|YP_006347859.1| - 0.0094 16.2 21.5 0.3 11.3 4.8 2.4 2 1 0 2 2 2 2 TATA element modulatory factor 1 TATA binding Golgin_A5 PF09787.9 gi|389845620|ref|YP_006347859.1| - 0.01 15.4 16.8 0.01 15.4 16.8 2.0 1 1 1 2 2 2 1 Golgin subfamily A member 5 Tropomyosin PF00261.20 gi|389845620|ref|YP_006347859.1| - 0.01 15.3 16.0 0.11 11.9 7.4 2.1 2 0 0 2 2 2 0 Tropomyosin TMF_DNA_bd PF12329.8 gi|389845620|ref|YP_006347859.1| - 0.012 15.6 3.4 0.012 15.6 3.4 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding PRKG1_interact PF15898.5 gi|389845620|ref|YP_006347859.1| - 0.017 16.0 10.5 0.46 11.4 4.5 2.4 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain Syntaxin PF00804.25 gi|389845620|ref|YP_006347859.1| - 0.017 14.8 14.0 0.13 11.9 0.5 2.4 2 1 0 2 2 2 0 Syntaxin CC2-LZ PF16516.5 gi|389845620|ref|YP_006347859.1| - 0.021 15.1 1.4 0.021 15.1 1.4 2.6 2 1 0 2 2 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Filament PF00038.21 gi|389845620|ref|YP_006347859.1| - 0.023 14.3 21.3 0.24 10.9 11.7 2.0 2 0 0 2 2 2 0 Intermediate filament protein DUF4201 PF13870.6 gi|389845620|ref|YP_006347859.1| - 0.027 14.2 11.5 0.48 10.1 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) DHR10 PF18595.1 gi|389845620|ref|YP_006347859.1| - 0.03 14.4 21.4 0.3 11.1 2.6 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain TSC22 PF01166.18 gi|389845620|ref|YP_006347859.1| - 0.031 14.6 4.3 0.031 14.6 4.3 3.0 2 1 1 3 3 2 0 TSC-22/dip/bun family Nmad5 PF18757.1 gi|389845620|ref|YP_006347859.1| - 0.032 14.5 0.3 0.032 14.5 0.3 1.9 1 1 1 2 2 2 0 Nucleotide modification associated domain 5 GPS2_interact PF15784.5 gi|389845620|ref|YP_006347859.1| - 0.033 14.6 16.6 0.11 12.9 6.6 2.2 2 0 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain Allexi_40kDa PF05549.11 gi|389845620|ref|YP_006347859.1| - 0.037 13.5 6.7 0.26 10.8 2.6 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Med4 PF10018.9 gi|389845620|ref|YP_006347859.1| - 0.038 13.7 14.4 0.46 10.1 1.0 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4988 PF16378.5 gi|389845620|ref|YP_006347859.1| - 0.038 13.7 9.4 0.45 10.2 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function HAUS-augmin3 PF14932.6 gi|389845620|ref|YP_006347859.1| - 0.043 13.4 15.4 0.41 10.2 1.8 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 APG6_N PF17675.1 gi|389845620|ref|YP_006347859.1| - 0.046 14.3 31.9 0.53 10.8 8.6 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region SKA2 PF16740.5 gi|389845620|ref|YP_006347859.1| - 0.068 13.0 0.2 0.068 13.0 0.2 2.3 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Phage_GP20 PF06810.11 gi|389845620|ref|YP_006347859.1| - 0.079 12.8 16.5 0.49 10.2 1.3 2.2 2 0 0 2 2 2 0 Phage minor structural protein GP20 FliD_C PF07195.12 gi|389845620|ref|YP_006347859.1| - 0.083 12.3 11.1 0.15 11.5 6.2 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus IFT57 PF10498.9 gi|389845620|ref|YP_006347859.1| - 0.087 11.8 15.5 0.11 11.5 1.8 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 FliJ PF02050.16 gi|389845620|ref|YP_006347859.1| - 0.092 13.0 1.0 0.092 13.0 1.0 3.0 2 1 1 3 3 3 0 Flagellar FliJ protein Not3 PF04065.15 gi|389845620|ref|YP_006347859.1| - 0.096 12.1 15.7 0.31 10.5 6.6 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF1664 PF07889.12 gi|389845620|ref|YP_006347859.1| - 0.098 12.7 17.0 0.19 11.7 0.9 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|389845620|ref|YP_006347859.1| - 0.1 12.5 15.1 0.075 12.9 1.7 2.4 2 1 1 3 3 2 0 Sec34-like family DUF3450 PF11932.8 gi|389845620|ref|YP_006347859.1| - 0.12 11.7 25.6 0.19 11.0 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|389845620|ref|YP_006347859.1| - 0.13 12.7 29.8 0.95 10.0 8.2 2.4 1 1 1 2 2 2 0 Cell division protein ZapB JAKMIP_CC3 PF16034.5 gi|389845620|ref|YP_006347859.1| - 0.15 12.0 22.1 1.1 9.2 10.7 2.2 2 0 0 2 2 2 0 JAKMIP CC3 domain Csm1_N PF18504.1 gi|389845620|ref|YP_006347859.1| - 0.15 12.5 20.3 0.11 12.9 3.2 3.1 2 1 2 4 4 3 0 Csm1 N-terminal domain DUF4763 PF15960.5 gi|389845620|ref|YP_006347859.1| - 0.2 10.9 13.4 0.16 11.3 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) DUF3287 PF11690.8 gi|389845620|ref|YP_006347859.1| - 0.21 11.3 1.9 9.3 6.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) Laminin_II PF06009.12 gi|389845620|ref|YP_006347859.1| - 0.23 11.5 12.9 0.15 12.1 1.2 2.2 1 1 0 2 2 2 0 Laminin Domain II Cep57_CLD_2 PF14197.6 gi|389845620|ref|YP_006347859.1| - 0.24 11.5 15.9 1.5 9.0 2.9 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 SOGA PF11365.8 gi|389845620|ref|YP_006347859.1| - 0.24 12.5 11.5 1.7 9.8 0.5 2.2 2 0 0 2 2 2 0 Protein SOGA KASH_CCD PF14662.6 gi|389845620|ref|YP_006347859.1| - 0.24 11.2 26.3 0.75 9.6 15.3 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH ATP-synt_D PF01813.17 gi|389845620|ref|YP_006347859.1| - 0.26 11.1 8.2 0.69 9.7 4.1 2.2 2 0 0 2 2 2 0 ATP synthase subunit D Muted PF14942.6 gi|389845620|ref|YP_006347859.1| - 0.27 11.6 14.1 3.1 8.1 0.7 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF5320 PF17253.2 gi|389845620|ref|YP_006347859.1| - 0.29 12.2 0.2 0.29 12.2 0.2 3.6 2 2 1 3 3 2 0 Family of unknown function (DUF5320) SKA1 PF07160.12 gi|389845620|ref|YP_006347859.1| - 0.31 10.9 12.8 2 8.2 5.1 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 DUF948 PF06103.11 gi|389845620|ref|YP_006347859.1| - 0.32 11.3 9.0 0.52 10.6 0.5 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 gi|389845620|ref|YP_006347859.1| - 0.36 11.4 14.6 2.2 8.9 6.4 2.4 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF4407 PF14362.6 gi|389845620|ref|YP_006347859.1| - 0.38 10.1 18.3 2.6 7.3 18.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Ax_dynein_light PF10211.9 gi|389845620|ref|YP_006347859.1| - 0.39 10.7 20.6 0.85 9.5 1.3 2.3 2 1 0 2 2 2 0 Axonemal dynein light chain Jnk-SapK_ap_N PF09744.9 gi|389845620|ref|YP_006347859.1| - 0.41 10.9 19.6 0.62 10.3 9.0 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 MCU PF04678.13 gi|389845620|ref|YP_006347859.1| - 0.42 10.7 11.9 4.2 7.5 5.4 2.3 1 1 0 2 2 2 0 Mitochondrial calcium uniporter DUF2730 PF10805.8 gi|389845620|ref|YP_006347859.1| - 0.43 10.7 8.4 2.9 8.1 0.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) CENP-H PF05837.12 gi|389845620|ref|YP_006347859.1| - 0.44 11.0 19.1 2.4 8.6 2.9 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Spc24 PF08286.11 gi|389845620|ref|YP_006347859.1| - 0.48 10.7 22.5 1.1 9.6 5.7 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 GrpE PF01025.19 gi|389845620|ref|YP_006347859.1| - 0.49 10.1 15.7 2.7 7.6 7.6 2.2 2 0 0 2 2 2 0 GrpE AAA_13 PF13166.6 gi|389845620|ref|YP_006347859.1| - 0.49 9.0 16.1 2.7 6.5 16.1 1.8 1 1 0 1 1 1 0 AAA domain TolA_bind_tri PF16331.5 gi|389845620|ref|YP_006347859.1| - 0.51 10.4 38.5 0.17 12.0 5.0 3.5 2 1 1 3 3 2 0 TolA binding protein trimerisation UPF0242 PF06785.11 gi|389845620|ref|YP_006347859.1| - 0.53 10.4 26.4 1.2 9.2 14.7 2.1 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|389845620|ref|YP_006347859.1| - 0.57 10.6 19.1 2.8 8.3 19.2 1.8 1 1 0 1 1 1 0 Fez1 DUF5082 PF16888.5 gi|389845620|ref|YP_006347859.1| - 0.6 10.4 23.2 0.53 10.6 4.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) E2F_CC-MB PF16421.5 gi|389845620|ref|YP_006347859.1| - 0.64 10.4 20.0 1.1 9.6 1.9 2.9 2 1 1 3 3 2 0 E2F transcription factor CC-MB domain LMBR1 PF04791.16 gi|389845620|ref|YP_006347859.1| - 0.68 8.8 5.9 0.86 8.4 5.9 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Mod_r PF07200.13 gi|389845620|ref|YP_006347859.1| - 0.7 10.0 16.8 1.4 9.0 1.5 2.2 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.11 gi|389845620|ref|YP_006347859.1| - 0.73 10.3 19.9 1.3 9.5 5.1 3.7 3 2 2 5 5 4 0 Flagella accessory protein C (FlaC) DUF1515 PF07439.11 gi|389845620|ref|YP_006347859.1| - 0.74 9.9 11.5 0.13 12.3 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) zf-CpG_bind_C PF12269.8 gi|389845620|ref|YP_006347859.1| - 0.83 9.4 9.8 4.5 7.0 4.7 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain XhlA PF10779.9 gi|389845620|ref|YP_006347859.1| - 0.83 9.9 13.2 3.3 8.0 3.7 2.6 2 1 0 2 2 2 0 Haemolysin XhlA TBCC_N PF16752.5 gi|389845620|ref|YP_006347859.1| - 0.85 10.1 14.3 0.22 12.0 1.4 2.3 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain BCAS2 PF05700.11 gi|389845620|ref|YP_006347859.1| - 0.93 9.1 18.0 0.53 9.9 7.8 2.0 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) GlutR_dimer PF00745.20 gi|389845620|ref|YP_006347859.1| - 0.93 10.0 10.0 0.14 12.6 3.7 2.2 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain LPP PF04728.13 gi|389845620|ref|YP_006347859.1| - 1.4 9.4 20.2 2.1 8.8 3.5 3.9 2 2 1 3 3 2 0 Lipoprotein leucine-zipper ORF6C PF10552.9 gi|389845620|ref|YP_006347859.1| - 1.4 9.0 14.7 0.29 11.2 1.3 2.4 2 1 0 2 2 2 0 ORF6C domain ABC_tran_CTD PF16326.5 gi|389845620|ref|YP_006347859.1| - 1.5 9.1 33.2 1.8 8.8 9.1 3.4 2 2 1 3 3 3 0 ABC transporter C-terminal domain Occludin_ELL PF07303.13 gi|389845620|ref|YP_006347859.1| - 1.6 9.5 13.2 1.7 9.4 0.6 2.6 2 1 1 3 3 2 0 Occludin homology domain Seryl_tRNA_N PF02403.22 gi|389845620|ref|YP_006347859.1| - 1.7 8.9 18.5 1.2 9.4 1.6 2.5 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain V_ATPase_I PF01496.19 gi|389845620|ref|YP_006347859.1| - 1.8 6.4 12.8 2.4 5.9 6.1 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Nsp1_C PF05064.13 gi|389845620|ref|YP_006347859.1| - 1.8 8.4 19.1 4.3 7.2 9.7 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region TPR_MLP1_2 PF07926.12 gi|389845620|ref|YP_006347859.1| - 1.8 8.6 24.8 1.6 8.8 2.9 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Tektin PF03148.14 gi|389845620|ref|YP_006347859.1| - 2 7.1 21.2 0.2 10.4 7.1 2.8 1 1 1 2 2 2 0 Tektin family DivIVA PF05103.13 gi|389845620|ref|YP_006347859.1| - 2.5 8.2 19.8 5.3 7.1 9.2 2.1 2 0 0 2 2 2 0 DivIVA protein Tho2 PF11262.8 gi|389845620|ref|YP_006347859.1| - 2.6 7.2 10.0 0.89 8.7 3.2 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 HalX PF08663.10 gi|389845620|ref|YP_006347859.1| - 2.7 8.4 16.2 3.1 8.2 3.2 3.3 2 1 0 2 2 2 0 HalX domain CorA PF01544.18 gi|389845620|ref|YP_006347859.1| - 2.7 7.2 14.6 63 2.7 14.6 2.1 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Roughex PF06020.11 gi|389845620|ref|YP_006347859.1| - 3.2 6.8 8.9 3.3 6.7 8.9 1.2 1 0 0 1 1 1 0 Drosophila roughex protein YlqD PF11068.8 gi|389845620|ref|YP_006347859.1| - 3.2 8.1 28.4 3.6 8.0 5.4 2.6 2 1 0 2 2 2 0 YlqD protein Uds1 PF15456.6 gi|389845620|ref|YP_006347859.1| - 3.4 7.8 12.3 53 4.0 12.3 2.3 1 1 0 1 1 1 0 Up-regulated During Septation Paralemmin PF03285.15 gi|389845620|ref|YP_006347859.1| - 3.4 7.2 20.2 2.9 7.4 6.5 2.1 1 1 1 2 2 2 0 Paralemmin EzrA PF06160.12 gi|389845620|ref|YP_006347859.1| - 3.6 5.7 19.4 1 7.5 3.5 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA FAM76 PF16046.5 gi|389845620|ref|YP_006347859.1| - 3.8 6.8 9.3 6.4 6.0 4.3 2.0 2 0 0 2 2 2 0 FAM76 protein Vps51 PF08700.11 gi|389845620|ref|YP_006347859.1| - 4.2 7.5 12.6 1.7 8.8 0.2 3.4 2 2 1 3 3 3 0 Vps51/Vps67 Cob_adeno_trans PF01923.18 gi|389845620|ref|YP_006347859.1| - 5.2 7.2 10.0 4.5 7.4 3.9 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase DUF812 PF05667.11 gi|389845620|ref|YP_006347859.1| - 6 5.6 28.4 5.4e+02 -0.8 28.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Fungal_TACC PF12709.7 gi|389845620|ref|YP_006347859.1| - 7.1 7.2 17.9 0.48 10.9 2.6 3.0 2 1 1 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins ADIP PF11559.8 gi|389845620|ref|YP_006347859.1| - 7.4 6.6 19.3 9.3 6.3 1.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Atg14 PF10186.9 gi|389845620|ref|YP_006347859.1| - 7.4 5.6 16.4 32 3.5 16.4 1.8 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 JIP_LZII PF16471.5 gi|389845620|ref|YP_006347859.1| - 7.9 6.7 19.3 1.8 8.8 2.9 3.0 2 1 1 3 3 3 0 JNK-interacting protein leucine zipper II AAA_lid_9 PF17871.1 gi|389845620|ref|YP_006347859.1| - 8.5 6.4 15.0 15 5.6 0.8 2.5 2 1 0 2 2 2 0 AAA lid domain DUF724 PF05266.14 gi|389845620|ref|YP_006347859.1| - 8.9 6.1 18.5 4.9 6.9 1.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF724) DUF2312 PF10073.9 gi|389845620|ref|YP_006347859.1| - 9.5 6.0 13.1 11 5.8 2.0 3.1 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) SRP54 PF00448.22 gi|389845621|ref|YP_006347860.1| - 5.1e-67 225.3 0.3 9.1e-67 224.5 0.3 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|389845621|ref|YP_006347860.1| - 4.2e-16 58.9 1.1 4.2e-16 58.9 1.1 1.8 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain Thymidylate_kin PF02223.17 gi|389845621|ref|YP_006347860.1| - 3.7e-05 23.5 0.1 0.0011 18.6 0.0 2.6 2 0 0 2 2 2 1 Thymidylate kinase CbiA PF01656.23 gi|389845621|ref|YP_006347860.1| - 4.7e-05 23.4 0.0 0.00016 21.8 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|389845621|ref|YP_006347860.1| - 5.2e-05 23.2 0.0 9.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|389845621|ref|YP_006347860.1| - 7.3e-05 22.1 0.1 0.00014 21.2 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|389845621|ref|YP_006347860.1| - 0.00052 19.8 0.1 0.00052 19.8 0.1 1.9 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|389845621|ref|YP_006347860.1| - 0.00072 19.2 0.1 0.0016 18.1 0.1 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|389845621|ref|YP_006347860.1| - 0.0011 19.3 0.0 0.0011 19.3 0.0 3.1 1 1 2 3 3 2 1 AAA ATPase domain AAA_17 PF13207.6 gi|389845621|ref|YP_006347860.1| - 0.0014 19.0 0.1 0.0014 19.0 0.1 2.7 3 0 0 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|389845621|ref|YP_006347860.1| - 0.0068 16.7 0.3 0.0068 16.7 0.3 3.2 3 1 0 3 3 3 1 AAA domain KTI12 PF08433.10 gi|389845621|ref|YP_006347860.1| - 0.0092 15.5 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 SPX PF03105.19 gi|389845621|ref|YP_006347860.1| - 0.016 15.1 4.8 0.022 14.7 4.8 1.2 1 0 0 1 1 1 0 SPX domain AAA_19 PF13245.6 gi|389845621|ref|YP_006347860.1| - 0.017 15.5 0.1 0.034 14.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|389845621|ref|YP_006347860.1| - 0.019 14.9 0.2 0.039 13.9 0.2 1.5 1 0 0 1 1 1 0 NTPase 6PF2K PF01591.18 gi|389845621|ref|YP_006347860.1| - 0.038 13.3 0.7 0.15 11.3 0.0 2.0 2 0 0 2 2 2 0 6-phosphofructo-2-kinase AAA_22 PF13401.6 gi|389845621|ref|YP_006347860.1| - 0.049 13.9 0.0 0.13 12.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.6 gi|389845621|ref|YP_006347860.1| - 0.049 13.7 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_31 PF13614.6 gi|389845621|ref|YP_006347860.1| - 0.056 13.4 0.2 0.19 11.6 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|389845621|ref|YP_006347860.1| - 0.066 13.4 0.0 0.23 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|389845621|ref|YP_006347860.1| - 0.094 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA PF00004.29 gi|389845621|ref|YP_006347860.1| - 0.097 13.1 0.2 0.31 11.5 0.1 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|389845621|ref|YP_006347860.1| - 0.098 12.2 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ParA PF10609.9 gi|389845621|ref|YP_006347860.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_23 PF13476.6 gi|389845621|ref|YP_006347860.1| - 0.52 10.8 0.1 0.52 10.8 0.1 2.3 3 0 0 3 3 3 0 AAA domain LysE PF01810.18 gi|389845622|ref|YP_006347861.1| - 6.5e-35 120.3 9.0 7.9e-35 120.1 9.0 1.1 1 0 0 1 1 1 1 LysE type translocator Phage_holin_2_3 PF16080.5 gi|389845622|ref|YP_006347861.1| - 6.6 6.6 8.4 17 5.2 0.1 3.4 4 0 0 4 4 4 0 Bacteriophage holin family HP1 SRP54 PF00448.22 gi|389845623|ref|YP_006347862.1| - 7e-63 211.8 0.1 1.4e-62 210.8 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|389845623|ref|YP_006347862.1| - 5.7e-28 97.4 5.7 5.7e-28 97.4 5.7 2.8 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|389845623|ref|YP_006347862.1| - 3.3e-19 68.9 2.0 1.7e-18 66.6 0.3 2.8 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|389845623|ref|YP_006347862.1| - 6.8e-05 22.9 0.0 0.00016 21.7 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|389845623|ref|YP_006347862.1| - 0.0059 16.2 0.4 0.048 13.3 0.4 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.15 gi|389845623|ref|YP_006347862.1| - 0.0067 15.7 0.0 0.0067 15.7 0.0 3.6 4 0 0 4 4 4 1 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|389845623|ref|YP_006347862.1| - 0.0077 15.5 0.0 0.03 13.6 0.0 2.0 2 1 1 3 3 3 1 Zeta toxin APS_kinase PF01583.20 gi|389845623|ref|YP_006347862.1| - 0.029 14.3 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|389845623|ref|YP_006347862.1| - 0.04 14.1 0.0 0.095 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|389845623|ref|YP_006347862.1| - 0.044 13.5 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|389845623|ref|YP_006347862.1| - 0.062 13.0 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.19 gi|389845623|ref|YP_006347862.1| - 0.063 12.7 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_31 PF13614.6 gi|389845623|ref|YP_006347862.1| - 0.066 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|389845623|ref|YP_006347862.1| - 0.092 13.3 0.0 0.42 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|389845623|ref|YP_006347862.1| - 0.096 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Flagellar_rod PF05149.12 gi|389845623|ref|YP_006347862.1| - 0.11 11.9 1.6 0.22 10.9 1.6 1.4 1 0 0 1 1 1 0 Paraflagellar rod protein ResIII PF04851.15 gi|389845623|ref|YP_006347862.1| - 0.12 12.4 0.3 0.42 10.6 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IZUMO PF15005.6 gi|389845623|ref|YP_006347862.1| - 1.3 9.5 3.0 1.4 9.5 0.2 2.3 3 0 0 3 3 2 0 Izumo sperm-egg fusion, Ig domain-associated T3SS_basalb_I PF17001.5 gi|389845623|ref|YP_006347862.1| - 9.8 6.8 13.8 0.68 10.6 1.6 3.5 3 1 0 3 3 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI MgtE PF01769.16 gi|389845624|ref|YP_006347863.1| - 1e-20 74.3 9.6 1e-20 74.3 9.6 1.8 2 0 0 2 2 2 1 Divalent cation transporter DUF3487 PF11990.8 gi|389845624|ref|YP_006347863.1| - 7.1 6.5 15.9 0.92 9.4 5.6 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3487) MgtE PF01769.16 gi|389845625|ref|YP_006347864.1| - 1.2e-20 74.2 13.7 1.2e-20 74.2 13.7 1.4 2 0 0 2 2 2 1 Divalent cation transporter RNA_binding PF01877.17 gi|389845627|ref|YP_006347866.1| - 1.7e-09 38.0 0.3 3.2e-08 33.8 0.3 2.1 1 1 0 1 1 1 1 RNA binding DUF3320 PF11784.8 gi|389845627|ref|YP_006347866.1| - 0.018 15.0 1.2 0.038 13.9 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) DUF4878 PF12870.7 gi|389845627|ref|YP_006347866.1| - 0.024 14.9 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) AAA_17 PF13207.6 gi|389845628|ref|YP_006347867.1| - 5.2e-21 75.5 0.2 7.1e-21 75.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|389845628|ref|YP_006347867.1| - 1.3e-14 54.8 0.1 1.7e-14 54.5 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389845628|ref|YP_006347867.1| - 1.5e-07 31.7 0.0 2.6e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|389845628|ref|YP_006347867.1| - 0.0004 20.1 0.1 0.07 12.8 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase ADK PF00406.22 gi|389845628|ref|YP_006347867.1| - 0.00053 20.1 0.1 0.00074 19.6 0.1 1.4 1 1 0 1 1 1 1 Adenylate kinase DRTGG PF07085.12 gi|389845628|ref|YP_006347867.1| - 0.0047 16.7 0.0 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 DRTGG domain Cytidylate_kin2 PF13189.6 gi|389845628|ref|YP_006347867.1| - 0.041 14.0 0.1 0.072 13.2 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase-like family CPT PF07931.12 gi|389845628|ref|YP_006347867.1| - 0.08 12.8 0.5 0.19 11.6 0.5 1.7 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein YccF PF03733.13 gi|389845629|ref|YP_006347868.1| - 8.1e-11 42.5 24.6 1.1e-05 26.0 6.2 2.1 2 0 0 2 2 2 2 Inner membrane component domain DsbC_N PF10411.9 gi|662859288|ref|YP_006347869.2| - 0.13 11.7 0.0 0.47 10.0 0.0 1.8 2 0 0 2 2 2 0 Disulfide bond isomerase protein N-terminus DUF2724 PF10893.8 gi|662859288|ref|YP_006347869.2| - 0.14 12.0 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) Cpn60_TCP1 PF00118.24 gi|662859289|ref|YP_006347870.2| - 7.2e-180 598.8 16.0 8.2e-180 598.6 16.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PGM_PMM_II PF02879.16 gi|662859289|ref|YP_006347870.2| - 0.077 13.6 1.6 16 6.2 0.0 2.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YjeF_N PF03853.15 gi|389845632|ref|YP_006347871.1| - 7.8e-40 136.5 2.4 1e-39 136.2 2.4 1.1 1 0 0 1 1 1 1 YjeF-related protein N-terminus KH_1 PF00013.29 gi|389845633|ref|YP_006347872.1| - 1.6e-13 50.2 1.1 3.4e-07 30.0 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|389845633|ref|YP_006347872.1| - 1.3e-05 24.9 1.8 0.005 16.6 0.0 2.5 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|389845633|ref|YP_006347872.1| - 0.013 15.4 3.3 0.89 9.5 0.3 3.0 3 1 0 3 3 3 0 KH domain RIO1 PF01163.22 gi|389845634|ref|YP_006347873.1| - 1.4e-62 210.7 0.1 1.4e-62 210.7 0.1 1.4 2 0 0 2 2 2 1 RIO1 family Kdo PF06293.14 gi|389845634|ref|YP_006347873.1| - 1.5e-09 37.5 0.2 3.3e-09 36.4 0.2 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|389845634|ref|YP_006347873.1| - 1.5e-08 34.9 1.6 7e-06 26.1 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|389845634|ref|YP_006347873.1| - 2e-05 24.1 0.0 7.9e-05 22.2 0.0 1.8 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|389845634|ref|YP_006347873.1| - 0.00082 18.3 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase WaaY PF06176.11 gi|389845634|ref|YP_006347873.1| - 0.0076 15.9 0.0 0.015 14.9 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|389845634|ref|YP_006347873.1| - 0.064 12.5 0.0 0.65 9.2 0.0 2.0 2 0 0 2 2 2 0 Protein tyrosine kinase eIF-1a PF01176.19 gi|389845635|ref|YP_006347874.1| - 6.1e-24 83.6 0.8 7.8e-24 83.3 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 tRNA-synt_1b PF00579.25 gi|389845636|ref|YP_006347875.1| - 3e-49 167.9 0.0 3.9e-49 167.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|389845636|ref|YP_006347875.1| - 0.034 13.1 0.0 6.3 5.6 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) PLDc_N PF13396.6 gi|389845637|ref|YP_006347876.1| - 2.2e-05 24.3 5.3 2.2e-05 24.3 5.3 3.1 2 1 1 3 3 3 1 Phospholipase_D-nuclease N-terminal TctB PF07331.11 gi|389845637|ref|YP_006347876.1| - 0.3 11.3 10.3 0.38 11.0 10.3 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3040 PF11239.8 gi|389845637|ref|YP_006347876.1| - 0.59 10.4 4.1 1.4 9.2 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF460 PF04312.13 gi|389845638|ref|YP_006347877.1| - 3.6e-47 159.6 3.0 4.7e-47 159.2 0.1 2.5 3 0 0 3 3 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|389845638|ref|YP_006347877.1| - 4.8e-07 30.1 2.2 4.8e-07 30.1 2.2 2.7 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor TACC_C PF05010.14 gi|389845638|ref|YP_006347877.1| - 0.00049 20.0 8.4 0.00049 20.0 8.4 2.3 2 0 0 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal FAM76 PF16046.5 gi|389845638|ref|YP_006347877.1| - 0.0023 17.3 4.5 0.0023 17.3 4.5 1.5 2 0 0 2 2 2 1 FAM76 protein Exonuc_VII_L PF02601.15 gi|389845638|ref|YP_006347877.1| - 0.0056 16.3 0.8 0.011 15.3 0.5 1.7 2 0 0 2 2 1 1 Exonuclease VII, large subunit MbeD_MobD PF04899.12 gi|389845638|ref|YP_006347877.1| - 0.0079 16.3 1.4 4.7 7.4 0.6 2.7 2 0 0 2 2 2 1 MbeD/MobD like TMF_DNA_bd PF12329.8 gi|389845638|ref|YP_006347877.1| - 0.0099 15.9 20.2 0.026 14.5 17.3 2.7 1 1 1 2 2 2 1 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.6 gi|389845638|ref|YP_006347877.1| - 0.012 14.3 5.5 0.022 13.4 5.5 1.3 1 0 0 1 1 1 0 AAA domain bZIP_1 PF00170.21 gi|389845638|ref|YP_006347877.1| - 0.013 15.5 17.8 0.24 11.5 9.4 2.7 2 0 0 2 2 2 0 bZIP transcription factor SlyX PF04102.12 gi|389845638|ref|YP_006347877.1| - 0.018 15.7 8.3 1.4 9.6 0.7 3.1 1 1 1 2 2 2 0 SlyX FlaC_arch PF05377.11 gi|389845638|ref|YP_006347877.1| - 0.028 14.8 11.5 0.37 11.2 3.2 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) ATG16 PF08614.11 gi|389845638|ref|YP_006347877.1| - 0.032 14.5 26.3 0.13 12.5 19.4 2.7 2 1 0 2 2 1 0 Autophagy protein 16 (ATG16) DUF4763 PF15960.5 gi|389845638|ref|YP_006347877.1| - 0.046 13.0 9.7 0.079 12.3 9.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) NPV_P10 PF05531.12 gi|389845638|ref|YP_006347877.1| - 0.14 12.6 0.6 14 6.2 0.1 3.0 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|389845638|ref|YP_006347877.1| - 0.18 11.8 4.2 0.93 9.5 4.2 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4988 PF16378.5 gi|389845638|ref|YP_006347877.1| - 0.2 11.3 2.5 3.2 7.4 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function BLOC1_2 PF10046.9 gi|389845638|ref|YP_006347877.1| - 0.22 11.8 8.9 0.87 9.9 0.3 2.8 2 1 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FapA PF03961.13 gi|389845638|ref|YP_006347877.1| - 0.32 9.5 7.0 0.59 8.7 7.0 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Atg14 PF10186.9 gi|389845638|ref|YP_006347877.1| - 0.33 10.0 10.1 1.9 7.5 9.9 1.8 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 HALZ PF02183.18 gi|389845638|ref|YP_006347877.1| - 0.62 10.3 6.0 0.5 10.6 2.4 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper Fib_alpha PF08702.10 gi|389845638|ref|YP_006347877.1| - 0.67 10.1 9.9 0.13 12.5 5.4 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Prefoldin PF02996.17 gi|389845638|ref|YP_006347877.1| - 1.6 8.7 13.6 1.5 8.8 1.1 3.7 4 0 0 4 4 3 0 Prefoldin subunit TMPIT PF07851.13 gi|389845638|ref|YP_006347877.1| - 1.6 7.9 2.8 2.9 7.1 2.8 1.4 1 0 0 1 1 1 0 TMPIT-like protein Laminin_II PF06009.12 gi|389845638|ref|YP_006347877.1| - 1.7 8.7 7.6 5.2 7.1 7.1 2.1 1 1 0 1 1 1 0 Laminin Domain II MCC-bdg_PDZ PF10506.9 gi|389845638|ref|YP_006347877.1| - 1.9 8.6 5.1 10 6.3 1.5 2.6 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Tho2 PF11262.8 gi|389845638|ref|YP_006347877.1| - 2.8 7.0 5.7 6.1 5.9 5.7 1.6 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Csm1_N PF18504.1 gi|389845638|ref|YP_006347877.1| - 3.5 8.0 12.4 24 5.4 4.6 3.3 1 1 1 2 2 2 0 Csm1 N-terminal domain V_ATPase_I PF01496.19 gi|389845638|ref|YP_006347877.1| - 5.2 4.9 12.8 2 6.2 9.1 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family XhlA PF10779.9 gi|389845638|ref|YP_006347877.1| - 5.9 7.2 12.8 6.4 7.1 1.9 3.0 2 0 0 2 2 2 0 Haemolysin XhlA DUF4407 PF14362.6 gi|389845638|ref|YP_006347877.1| - 8.7 5.6 16.9 5.2 6.3 9.8 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) Mt_ATP-synt_D PF05873.12 gi|389845638|ref|YP_006347877.1| - 8.9 6.2 10.5 6.9 6.5 1.4 3.8 3 1 1 4 4 4 0 ATP synthase D chain, mitochondrial (ATP5H) MPS2 PF17060.5 gi|389845638|ref|YP_006347877.1| - 9.9 5.3 12.3 3.2 6.9 8.6 1.8 1 1 1 2 2 2 0 Monopolar spindle protein 2 Band_7 PF01145.25 gi|389845639|ref|YP_006347878.1| - 8.1e-29 100.9 3.6 1.1e-28 100.4 3.6 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|389845639|ref|YP_006347878.1| - 0.0015 18.3 0.1 0.0029 17.4 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family Macoilin PF09726.9 gi|389845639|ref|YP_006347878.1| - 0.92 8.0 7.5 1.2 7.6 7.5 1.1 1 0 0 1 1 1 0 Macoilin family AF-4 PF05110.13 gi|389845639|ref|YP_006347878.1| - 3.8 5.5 26.5 6.5 4.7 26.6 1.3 1 1 0 1 1 1 0 AF-4 proto-oncoprotein PhzC-PhzF PF02567.16 gi|389845641|ref|YP_006347880.1| - 3.8e-59 200.5 0.0 4.2e-59 200.3 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Lactamase_B_2 PF12706.7 gi|389845642|ref|YP_006347881.1| - 2.5e-23 82.7 1.5 4.8e-21 75.2 1.5 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|389845642|ref|YP_006347881.1| - 4e-13 49.8 6.0 9.9e-12 45.3 6.0 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|389845642|ref|YP_006347881.1| - 0.00037 20.1 0.0 0.00063 19.4 0.0 1.3 1 0 0 1 1 1 1 tRNase Z endonuclease HTH_Tnp_1 PF01527.20 gi|389845642|ref|YP_006347881.1| - 0.12 12.7 0.1 0.29 11.5 0.1 1.6 1 0 0 1 1 1 0 Transposase AAA PF00004.29 gi|389845643|ref|YP_006347882.1| - 2.2e-12 47.6 0.0 4.5e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|389845643|ref|YP_006347882.1| - 2.9e-12 46.6 0.0 4.7e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|389845643|ref|YP_006347882.1| - 4.6e-08 33.4 0.0 1.7e-07 31.6 0.0 1.9 2 1 1 3 3 2 1 AAA domain Rep_fac_C PF08542.11 gi|389845643|ref|YP_006347882.1| - 5.4e-08 33.1 0.0 1.4e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_16 PF13191.6 gi|389845643|ref|YP_006347882.1| - 5.1e-07 30.2 0.5 1.6e-06 28.6 0.0 2.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|389845643|ref|YP_006347882.1| - 3.3e-05 23.9 0.0 8.3e-05 22.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|389845643|ref|YP_006347882.1| - 0.00018 21.3 0.0 0.0025 17.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|389845643|ref|YP_006347882.1| - 0.00031 21.1 0.4 0.022 15.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|389845643|ref|YP_006347882.1| - 0.00049 20.0 0.0 0.0012 18.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|389845643|ref|YP_006347882.1| - 0.00051 20.6 0.0 0.0016 19.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|389845643|ref|YP_006347882.1| - 0.00058 19.6 0.0 0.00089 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|389845643|ref|YP_006347882.1| - 0.00069 19.6 0.3 0.0052 16.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|389845643|ref|YP_006347882.1| - 0.0012 18.8 0.0 0.0042 17.0 0.0 1.8 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.17 gi|389845643|ref|YP_006347882.1| - 0.0013 18.5 0.0 0.0075 16.0 0.0 2.2 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|389845643|ref|YP_006347882.1| - 0.0023 17.7 0.1 0.0085 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|389845643|ref|YP_006347882.1| - 0.0059 15.7 0.0 0.019 14.0 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|389845643|ref|YP_006347882.1| - 0.012 15.7 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|389845643|ref|YP_006347882.1| - 0.015 15.2 0.0 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 NTPase DUF2075 PF09848.9 gi|389845643|ref|YP_006347882.1| - 0.031 13.5 0.0 0.042 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Mg_chelatase PF01078.21 gi|389845643|ref|YP_006347882.1| - 0.053 12.9 0.0 0.19 11.1 0.0 1.9 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|389845643|ref|YP_006347882.1| - 0.061 13.2 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain DEAD PF00270.29 gi|389845643|ref|YP_006347882.1| - 0.064 13.0 0.0 14 5.4 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|389845643|ref|YP_006347882.1| - 0.11 12.9 0.0 0.31 11.4 0.0 1.8 2 0 0 2 2 2 0 RNA helicase DNA_pol3_delta PF06144.13 gi|389845643|ref|YP_006347882.1| - 0.11 12.3 0.0 0.38 10.5 0.0 1.8 2 1 0 2 2 1 0 DNA polymerase III, delta subunit GUN4_N PF16416.5 gi|389845643|ref|YP_006347882.1| - 0.14 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 ARM-like repeat domain, GUN4-N terminal Viral_helicase1 PF01443.18 gi|389845643|ref|YP_006347882.1| - 0.17 11.6 0.0 0.36 10.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_assoc_2 PF16193.5 gi|389845643|ref|YP_006347882.1| - 0.62 10.4 2.9 3.5 8.0 0.1 2.8 2 2 1 3 3 3 0 AAA C-terminal domain PS_Dcarbxylase PF02666.15 gi|389845644|ref|YP_006347883.1| - 5.8e-31 107.6 0.1 3e-25 89.0 0.0 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase RnfC_N PF13375.6 gi|389845644|ref|YP_006347883.1| - 0.00045 20.1 0.5 1.2 9.1 0.1 3.2 2 1 0 3 3 3 2 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|389845644|ref|YP_006347883.1| - 0.0042 16.9 0.3 15 5.5 0.0 3.9 4 0 0 4 4 4 1 Biotin-requiring enzyme Peptidase_M23 PF01551.22 gi|389845644|ref|YP_006347883.1| - 0.071 13.3 0.5 7.3 6.9 0.0 3.2 2 1 1 3 3 3 0 Peptidase family M23 PTS_EIIA_1 PF00358.20 gi|389845644|ref|YP_006347883.1| - 0.094 12.5 0.1 6.9 6.4 0.0 3.1 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UPF0020 PF01170.18 gi|662859290|ref|YP_006347886.2| - 2.9e-23 82.6 0.3 1.9e-22 80.0 0.1 2.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|662859290|ref|YP_006347886.2| - 3.4e-08 34.1 0.1 8.6e-08 32.8 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|662859290|ref|YP_006347886.2| - 3e-07 30.6 0.0 6e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|662859290|ref|YP_006347886.2| - 1.8e-06 27.8 0.0 2.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|662859290|ref|YP_006347886.2| - 2e-06 28.3 0.0 4.8e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|662859290|ref|YP_006347886.2| - 0.0011 18.6 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|662859290|ref|YP_006347886.2| - 0.0029 17.5 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|662859290|ref|YP_006347886.2| - 0.013 14.9 0.0 0.53 9.7 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa Ubie_methyltran PF01209.18 gi|662859290|ref|YP_006347886.2| - 0.037 13.4 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|662859290|ref|YP_006347886.2| - 0.067 12.8 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|662859290|ref|YP_006347886.2| - 0.11 11.7 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase TBP PF00352.21 gi|389845649|ref|YP_006347888.1| - 1.9e-56 188.0 0.0 7.3e-28 96.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|389845649|ref|YP_006347888.1| - 3.7e-05 24.0 0.0 0.017 15.4 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|389845649|ref|YP_006347888.1| - 0.0002 21.4 0.0 0.53 10.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|389845649|ref|YP_006347888.1| - 0.01 15.9 0.0 0.45 10.5 0.0 2.1 1 1 1 2 2 2 1 DUF218 domain DUF997 PF06196.12 gi|389845650|ref|YP_006347889.1| - 0.31 11.1 3.6 1.1 9.3 2.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF997) TraG_N PF07916.11 gi|389845650|ref|YP_006347889.1| - 0.89 8.3 7.9 0.26 10.1 4.9 1.5 1 1 0 1 1 1 0 TraG-like protein, N-terminal region YSIRK_signal PF04650.17 gi|389845650|ref|YP_006347889.1| - 7.2 6.6 7.3 0.9 9.5 2.9 1.9 2 0 0 2 2 2 0 YSIRK type signal peptide CPBP PF02517.16 gi|389845651|ref|YP_006347890.1| - 8.3e-14 51.7 4.0 8.3e-14 51.7 4.0 2.5 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF1129 PF06570.11 gi|389845651|ref|YP_006347890.1| - 1.6 8.2 4.9 6.8 6.1 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) HisG PF01634.18 gi|389845652|ref|YP_006347891.1| - 8.7e-49 165.6 0.2 1.3e-48 165.0 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|389845652|ref|YP_006347891.1| - 3.6e-28 97.5 0.1 9e-28 96.2 0.1 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|389845652|ref|YP_006347891.1| - 0.0054 16.7 0.0 0.094 12.6 0.0 2.1 1 1 1 2 2 2 2 NMT1/THI5 like Wzy_C PF04932.15 gi|389845653|ref|YP_006347892.1| - 0.16 11.6 8.7 0.34 10.5 0.8 3.4 2 1 0 3 3 3 0 O-Antigen ligase TetR_C_14 PF17754.1 gi|389845653|ref|YP_006347892.1| - 0.35 10.8 10.3 15 5.6 0.1 4.4 4 1 1 5 5 5 0 MftR C-terminal domain HTH_24 PF13412.6 gi|389845654|ref|YP_006347893.1| - 7.9e-13 47.7 0.0 6.2e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389845654|ref|YP_006347893.1| - 4e-12 45.8 1.8 5e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|389845654|ref|YP_006347893.1| - 1.3e-09 38.0 6.5 4.9e-05 23.3 1.8 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|389845654|ref|YP_006347893.1| - 3.1e-07 30.2 0.1 0.002 18.0 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|389845654|ref|YP_006347893.1| - 7.6e-07 28.9 0.0 0.0092 15.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|389845654|ref|YP_006347893.1| - 3.2e-06 26.8 0.4 0.0035 17.1 0.1 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain TrmB PF01978.19 gi|389845654|ref|YP_006347893.1| - 3.3e-06 26.9 0.0 0.00019 21.3 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|389845654|ref|YP_006347893.1| - 0.0026 17.7 0.9 0.43 10.6 0.2 2.6 2 1 0 2 2 2 1 Beta-lactamase associated winged helix domain HTH_31 PF13560.6 gi|389845654|ref|YP_006347893.1| - 0.0084 16.4 1.5 8.9 6.7 0.1 3.3 1 1 2 3 3 3 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|389845654|ref|YP_006347893.1| - 0.013 15.5 0.4 0.063 13.4 0.0 2.1 2 0 0 2 2 2 0 DprA winged helix domain HTH_10 PF04967.12 gi|389845654|ref|YP_006347893.1| - 0.039 13.8 0.0 0.53 10.1 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain FaeA PF04703.12 gi|389845654|ref|YP_006347893.1| - 0.042 14.2 0.0 0.52 10.7 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein Fe_dep_repress PF01325.19 gi|389845654|ref|YP_006347893.1| - 0.051 13.8 0.0 1.3 9.3 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|389845654|ref|YP_006347893.1| - 0.081 12.9 0.1 0.28 11.2 0.1 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|389845654|ref|YP_006347893.1| - 0.17 11.8 4.8 1.4 8.8 0.1 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain 7TMR-DISM_7TM PF07695.11 gi|389845655|ref|YP_006347894.1| - 0.0024 17.8 4.7 0.0029 17.5 4.7 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling HutD PF05962.11 gi|389845655|ref|YP_006347894.1| - 0.066 13.2 0.0 0.088 12.8 0.0 1.1 1 0 0 1 1 1 0 HutD QueT PF06177.11 gi|389845655|ref|YP_006347894.1| - 0.078 13.4 0.7 0.078 13.4 0.7 1.9 1 1 0 2 2 2 0 QueT transporter DUF2534 PF10749.9 gi|389845655|ref|YP_006347894.1| - 0.14 12.3 0.8 0.41 10.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2534) CcmD PF04995.14 gi|389845655|ref|YP_006347894.1| - 1.1 9.4 9.0 6.8 6.9 0.1 3.3 3 1 0 3 3 3 0 Heme exporter protein D (CcmD) PEP-CTERM PF07589.11 gi|389845655|ref|YP_006347894.1| - 1.3 9.2 16.9 1.3 9.2 2.9 3.7 3 1 0 3 3 3 0 PEP-CTERM motif Amidohydro_1 PF01979.20 gi|389845656|ref|YP_006347895.1| - 2.6e-69 234.2 4.1 3e-69 234.0 4.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|389845656|ref|YP_006347895.1| - 4.4e-24 85.8 18.7 3.7e-19 69.6 13.6 2.1 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|389845656|ref|YP_006347895.1| - 4e-05 23.1 0.0 6.7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase HTH_IclR PF09339.10 gi|389845657|ref|YP_006347896.1| - 1.4e-06 28.0 0.6 9.5e-06 25.3 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389845657|ref|YP_006347896.1| - 2.4e-05 24.3 0.4 3.9e-05 23.6 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389845657|ref|YP_006347896.1| - 0.0001 22.1 0.1 0.00016 21.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389845657|ref|YP_006347896.1| - 0.00073 19.4 0.1 0.0011 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389845657|ref|YP_006347896.1| - 0.0096 15.9 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|389845657|ref|YP_006347896.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family UL11 PF11094.8 gi|389845657|ref|YP_006347896.1| - 0.087 12.7 0.0 5.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Membrane-associated tegument protein DUF4403 PF14356.6 gi|389845657|ref|YP_006347896.1| - 0.16 10.6 0.0 0.17 10.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4403) AdoHcyase_NAD PF00670.21 gi|389845658|ref|YP_006347897.1| - 4.6e-50 169.8 1.1 7.2e-50 169.2 0.5 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AdoHcyase PF05221.17 gi|389845658|ref|YP_006347897.1| - 1.4e-48 165.6 0.0 1.8e-25 89.7 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase 2-Hacid_dh_C PF02826.19 gi|389845658|ref|YP_006347897.1| - 6.5e-11 41.9 0.1 1.2e-10 41.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|389845658|ref|YP_006347897.1| - 2.4e-06 27.2 1.1 4.2e-06 26.4 0.1 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|389845658|ref|YP_006347897.1| - 0.0052 17.0 0.1 0.012 15.8 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.20 gi|389845658|ref|YP_006347897.1| - 0.016 15.3 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UPF0180 PF03698.13 gi|389845658|ref|YP_006347897.1| - 0.06 13.5 0.1 0.6 10.3 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) PPR_long PF17177.4 gi|389845658|ref|YP_006347897.1| - 0.12 11.8 0.2 0.31 10.4 0.0 1.7 2 0 0 2 2 2 0 Pentacotripeptide-repeat region of PRORP Hjc PF01870.18 gi|389845659|ref|YP_006347898.1| - 6.5e-31 106.2 0.0 8e-31 105.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.21 gi|389845659|ref|YP_006347898.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 NHL repeat SWIM PF04434.17 gi|389845660|ref|YP_006347899.1| - 0.00025 20.6 0.1 0.00043 19.9 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF5455 PF17537.2 gi|389845661|ref|YP_006347900.1| - 0.056 13.8 5.5 0.15 12.5 5.1 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5455) DUF5337 PF17272.2 gi|389845661|ref|YP_006347900.1| - 0.12 12.2 3.3 0.16 11.8 3.3 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5337) DUF202 PF02656.15 gi|389845661|ref|YP_006347900.1| - 0.67 10.4 6.4 0.97 9.9 6.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) PsbN PF02468.15 gi|389845661|ref|YP_006347900.1| - 2.7 7.9 5.5 3.3 7.6 0.5 2.1 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) FixQ PF05545.11 gi|389845661|ref|YP_006347900.1| - 3.3 7.8 4.8 0.9 9.6 0.7 2.1 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DNA_primase_lrg PF04104.14 gi|662859291|ref|YP_006347901.2| - 6.1e-19 68.4 0.0 2.5e-18 66.4 0.0 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF4651 PF15513.6 gi|662859291|ref|YP_006347901.2| - 0.076 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) HisKA_7TM PF16927.5 gi|389845664|ref|YP_006347903.1| - 7.2e-47 160.3 18.3 9e-47 159.9 18.3 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|389845664|ref|YP_006347903.1| - 4.1e-11 43.4 0.0 9e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389845664|ref|YP_006347903.1| - 1.9e-07 31.0 0.0 5.2e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|389845664|ref|YP_006347903.1| - 1.2e-05 25.3 1.9 0.0047 16.9 0.0 2.8 3 0 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|389845664|ref|YP_006347903.1| - 1.5e-05 24.9 0.2 4e-05 23.5 0.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|389845664|ref|YP_006347903.1| - 1.9e-05 24.5 0.3 5.9e-05 23.0 0.3 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|389845664|ref|YP_006347903.1| - 0.00016 21.9 5.4 0.098 12.9 5.4 2.5 1 1 0 1 1 1 1 PAS fold HisKA_4TM PF16926.5 gi|389845664|ref|YP_006347903.1| - 0.003 17.1 0.2 0.003 17.1 0.2 2.0 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_9 PF13426.7 gi|389845664|ref|YP_006347903.1| - 0.0086 16.3 0.1 0.17 12.2 0.1 2.4 1 1 0 1 1 1 1 PAS domain PAS_10 PF13596.6 gi|389845664|ref|YP_006347903.1| - 0.038 14.6 0.7 0.64 10.6 0.2 2.6 2 1 0 2 2 2 0 PAS domain PAS_7 PF12860.7 gi|389845664|ref|YP_006347903.1| - 0.093 12.9 1.4 0.31 11.2 0.0 2.3 2 0 0 2 2 2 0 PAS fold PCNA_N PF00705.18 gi|389845665|ref|YP_006347904.1| - 1.4e-09 37.7 0.2 3.3e-09 36.5 0.1 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|389845665|ref|YP_006347904.1| - 1.6e-08 34.8 0.0 4.6e-08 33.3 0.0 1.8 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain LMWPc PF01451.21 gi|389845666|ref|YP_006347905.1| - 7.3e-31 107.5 0.1 8.9e-31 107.2 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Abdominal-A PF12407.8 gi|389845666|ref|YP_006347905.1| - 0.34 10.5 4.7 0.32 10.6 0.8 2.3 2 0 0 2 2 2 0 Homeobox protein FtsJ PF01728.19 gi|389845667|ref|YP_006347906.1| - 1.1e-55 188.5 0.0 1.3e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|389845667|ref|YP_006347906.1| - 1.1e-12 47.8 0.7 1.9e-12 47.0 0.7 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|389845667|ref|YP_006347906.1| - 0.00015 21.6 0.0 0.0009 19.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389845667|ref|YP_006347906.1| - 0.0034 17.3 0.0 0.0096 15.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389845667|ref|YP_006347906.1| - 0.022 15.4 0.2 0.067 13.9 0.2 2.0 1 1 0 1 1 1 0 Methyltransferase domain Hema_stalk PF08720.10 gi|389845667|ref|YP_006347906.1| - 0.045 13.4 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk NSP16 PF06460.12 gi|389845667|ref|YP_006347906.1| - 0.077 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP16 OrfB_IS605 PF01385.19 gi|389845669|ref|YP_006347908.1| - 1.7e-31 109.0 0.1 2.6e-31 108.3 0.1 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|389845669|ref|YP_006347908.1| - 3.2e-16 59.0 1.0 7.4e-16 57.8 1.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Y1_Tnp PF01797.16 gi|389845670|ref|YP_006347909.1| - 2.4e-31 108.3 0.2 3.2e-29 101.5 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like Vut_1 PF02592.15 gi|389845671|ref|YP_006347910.1| - 1e-48 165.5 8.2 1e-48 165.5 8.2 1.3 2 0 0 2 2 2 1 Putative vitamin uptake transporter RHH_1 PF01402.21 gi|389845672|ref|YP_006347911.1| - 0.00095 19.0 1.9 0.0025 17.7 0.2 2.3 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family TatC PF00902.18 gi|389845673|ref|YP_006347912.1| - 1.6e-67 227.3 43.3 8.1e-40 136.9 12.6 2.4 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) ISK_Channel PF02060.15 gi|389845673|ref|YP_006347912.1| - 0.13 12.0 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 Slow voltage-gated potassium channel COX14 PF14880.6 gi|389845673|ref|YP_006347912.1| - 1.1 9.2 3.1 1.2 9.0 0.4 2.6 2 0 0 2 2 2 0 Cytochrome oxidase c assembly TatC PF00902.18 gi|389845674|ref|YP_006347913.1| - 1.4e-36 126.2 11.2 1.8e-36 125.9 11.2 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) YfhO PF09586.10 gi|389845674|ref|YP_006347913.1| - 0.15 10.3 3.0 0.19 9.9 3.0 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Polyketide_cyc2 PF10604.9 gi|389845676|ref|YP_006347915.1| - 2.5e-17 63.5 0.1 3.1e-17 63.2 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|389845676|ref|YP_006347915.1| - 8.4e-08 32.5 0.1 1.1e-07 32.1 0.1 1.3 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.20 gi|389845676|ref|YP_006347915.1| - 1.1e-07 32.1 0.0 1.7e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport NEMO PF11577.8 gi|389845676|ref|YP_006347915.1| - 0.091 12.8 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 NF-kappa-B essential modulator NEMO His_Phos_1 PF00300.22 gi|389845677|ref|YP_006347916.1| - 2.6e-50 170.8 0.4 2.9e-50 170.7 0.4 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Asn_synthase PF00733.21 gi|389845678|ref|YP_006347917.1| - 1.3e-10 41.5 0.3 2e-10 40.9 0.3 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|389845678|ref|YP_006347917.1| - 2.3e-10 39.8 0.1 7e-07 28.4 0.1 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|389845678|ref|YP_006347917.1| - 7.9e-10 38.3 0.0 1.3e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|389845678|ref|YP_006347917.1| - 1.9e-05 24.3 0.0 0.00031 20.3 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|389845678|ref|YP_006347917.1| - 0.0044 16.8 0.0 0.016 14.9 0.0 2.0 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|389845678|ref|YP_006347917.1| - 0.0082 15.5 0.1 0.02 14.2 0.1 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase QueH PF02677.14 gi|389845678|ref|YP_006347917.1| - 0.017 15.2 0.0 0.034 14.2 0.0 1.5 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH ThiI PF02568.14 gi|389845678|ref|YP_006347917.1| - 0.019 14.6 0.0 0.039 13.5 0.0 1.5 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) MutS_V PF00488.21 gi|389845679|ref|YP_006347918.1| - 2.4e-08 34.3 0.0 4.8e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|389845679|ref|YP_006347918.1| - 0.00039 20.9 7.0 0.00056 20.5 0.5 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|389845679|ref|YP_006347918.1| - 0.011 15.6 2.1 0.036 14.0 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif Transposase_20 PF02371.16 gi|389845679|ref|YP_006347918.1| - 0.03 14.6 0.0 0.069 13.5 0.0 1.6 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family AAA_21 PF13304.6 gi|389845679|ref|YP_006347918.1| - 0.3 10.9 1.7 4.9 6.9 0.0 2.4 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Acetyltransf_3 PF13302.7 gi|389845680|ref|YP_006347919.1| - 4.6e-20 72.7 0.0 5.9e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|389845680|ref|YP_006347919.1| - 0.00011 22.4 0.0 0.00015 22.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389845680|ref|YP_006347919.1| - 0.00019 21.7 0.0 0.00026 21.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|389845680|ref|YP_006347919.1| - 0.0038 17.2 0.0 0.0099 15.8 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|389845680|ref|YP_006347919.1| - 0.015 15.0 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 gi|389845682|ref|YP_006347921.1| - 3.2e-13 50.4 0.6 5.3e-11 43.2 0.4 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389845682|ref|YP_006347921.1| - 1.2e-09 38.6 0.0 2.6e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|389845682|ref|YP_006347921.1| - 4.3e-06 26.6 0.0 1.1e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|389845682|ref|YP_006347921.1| - 8.8e-06 26.2 0.0 2.4e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|389845682|ref|YP_006347921.1| - 0.00055 19.8 0.0 0.00083 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389845682|ref|YP_006347921.1| - 0.00069 19.8 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|389845682|ref|YP_006347921.1| - 0.0027 17.3 0.0 0.023 14.2 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region NACHT PF05729.12 gi|389845682|ref|YP_006347921.1| - 0.0045 16.9 0.0 0.0086 16.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|389845682|ref|YP_006347921.1| - 0.0047 16.7 0.2 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_35 PF14516.6 gi|389845682|ref|YP_006347921.1| - 0.0062 15.4 0.0 0.096 11.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.17 gi|389845682|ref|YP_006347921.1| - 0.011 15.4 0.6 2.1 8.0 0.0 2.7 4 0 0 4 4 2 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|389845682|ref|YP_006347921.1| - 0.013 15.5 0.0 0.066 13.1 0.0 2.2 1 1 1 2 2 2 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|389845682|ref|YP_006347921.1| - 0.016 15.1 0.2 0.029 14.3 0.2 1.5 1 0 0 1 1 1 0 NTPase TIP49_C PF17856.1 gi|389845682|ref|YP_006347921.1| - 0.016 15.3 0.0 0.053 13.7 0.0 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_6 PF12774.7 gi|389845682|ref|YP_006347921.1| - 0.026 13.5 0.0 0.049 12.6 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_14 PF13173.6 gi|389845682|ref|YP_006347921.1| - 0.03 14.3 0.0 0.13 12.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|389845682|ref|YP_006347921.1| - 0.042 13.6 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|389845682|ref|YP_006347921.1| - 0.044 14.1 0.0 0.08 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|389845682|ref|YP_006347921.1| - 0.048 12.7 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_32 PF13654.6 gi|389845682|ref|YP_006347921.1| - 0.08 11.7 0.0 7.7 5.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|389845682|ref|YP_006347921.1| - 0.081 13.5 0.1 0.2 12.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|389845682|ref|YP_006347921.1| - 0.089 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|389845682|ref|YP_006347921.1| - 0.09 12.0 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.13 gi|389845682|ref|YP_006347921.1| - 0.092 11.9 0.0 0.36 10.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|389845682|ref|YP_006347921.1| - 0.099 13.0 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.9 gi|389845682|ref|YP_006347921.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|389845682|ref|YP_006347921.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|389845682|ref|YP_006347921.1| - 0.15 12.1 0.1 0.3 11.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CbiA PF01656.23 gi|389845682|ref|YP_006347921.1| - 0.18 11.8 0.0 0.28 11.2 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Rib_5-P_isom_A PF06026.14 gi|389845683|ref|YP_006347922.1| - 8.8e-65 217.5 0.0 1.1e-64 217.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|389845683|ref|YP_006347922.1| - 1.1e-06 28.7 0.2 1.7e-05 24.8 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain DUF1931 PF09123.11 gi|389845684|ref|YP_006347923.1| - 0.00016 21.8 0.8 0.00017 21.7 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|389845684|ref|YP_006347923.1| - 0.0023 18.2 0.1 0.0036 17.6 0.1 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|389845684|ref|YP_006347923.1| - 0.041 14.2 0.0 0.041 14.2 0.0 1.2 1 1 0 1 1 1 0 Core histone H2A/H2B/H3/H4 DctP PF03480.13 gi|389845684|ref|YP_006347923.1| - 0.068 12.5 0.1 0.071 12.4 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 AIRC PF00731.20 gi|389845685|ref|YP_006347924.1| - 3e-16 59.3 3.1 3e-16 59.3 3.1 1.6 2 0 0 2 2 2 1 AIR carboxylase LytR_C PF13399.6 gi|389845685|ref|YP_006347924.1| - 0.26 12.3 3.4 9.7 7.3 0.3 2.7 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator ABC2_membrane_2 PF12679.7 gi|389845686|ref|YP_006347925.1| - 6.8e-21 74.8 16.4 1.1e-19 70.8 16.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389845686|ref|YP_006347925.1| - 0.0021 18.0 11.7 0.0021 18.0 11.7 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389845686|ref|YP_006347925.1| - 0.0047 16.1 15.1 0.0064 15.6 15.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389845686|ref|YP_006347925.1| - 0.0068 16.0 6.2 0.0068 16.0 6.2 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein SPC25 PF06703.11 gi|389845686|ref|YP_006347925.1| - 0.63 9.8 2.9 1.2 8.9 2.9 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF4162 PF13732.6 gi|389845687|ref|YP_006347926.1| - 2.7e-08 34.4 0.2 3.2e-08 34.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) GIY-YIG PF01541.24 gi|389845688|ref|YP_006347927.1| - 1.3e-18 67.0 0.0 1.5e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|389845688|ref|YP_006347927.1| - 0.025 15.1 0.1 0.028 15.0 0.1 1.2 1 0 0 1 1 1 0 T5orf172 domain PGM_PMM_I PF02878.16 gi|389845689|ref|YP_006347928.1| - 7.4e-38 129.4 0.0 1.3e-37 128.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|389845689|ref|YP_006347928.1| - 8.9e-25 87.3 0.4 2.1e-24 86.1 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|389845689|ref|YP_006347928.1| - 1.8e-24 86.1 0.0 3.4e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|389845689|ref|YP_006347928.1| - 2.1e-13 50.2 0.1 7.5e-13 48.5 0.1 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain LisH PF08513.11 gi|389845689|ref|YP_006347928.1| - 0.14 12.2 0.0 12 6.1 0.0 2.4 2 0 0 2 2 2 0 LisH HTH_20 PF12840.7 gi|389845690|ref|YP_006347929.1| - 0.00021 21.3 0.3 0.0015 18.6 0.3 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389845690|ref|YP_006347929.1| - 0.026 14.4 0.0 8.4 6.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Jag_N PF14804.6 gi|389845690|ref|YP_006347929.1| - 0.082 13.3 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 Jag N-terminus GST_N_5 PF18485.1 gi|389845690|ref|YP_006347929.1| - 0.16 12.3 0.1 0.23 11.8 0.1 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Acetyltransf_7 PF13508.7 gi|389845691|ref|YP_006347930.1| - 1.6e-09 38.1 0.0 2.1e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389845691|ref|YP_006347930.1| - 3.9e-07 30.3 0.0 5.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389845691|ref|YP_006347930.1| - 5.4e-07 29.6 0.0 6.8e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389845691|ref|YP_006347930.1| - 0.0017 18.5 0.0 0.048 13.7 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389845691|ref|YP_006347930.1| - 0.16 12.1 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AhpC-TSA PF00578.21 gi|389845692|ref|YP_006347931.1| - 1.9e-20 73.0 0.0 2.7e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|389845692|ref|YP_006347931.1| - 2.1e-12 47.0 0.0 2.9e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|389845692|ref|YP_006347931.1| - 0.0057 16.8 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|389845692|ref|YP_006347931.1| - 0.06 13.7 0.0 0.16 12.3 0.0 1.6 2 0 0 2 2 2 0 Thioredoxin-like DUF899 PF05988.12 gi|389845692|ref|YP_006347931.1| - 0.072 12.6 0.0 0.086 12.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Glyco_hydro_42C PF08533.10 gi|389845693|ref|YP_006347932.1| - 0.049 13.4 0.1 0.08 12.7 0.1 1.4 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain Rep_fac_C PF08542.11 gi|662859292|ref|YP_006347933.2| - 4.2e-24 84.8 0.1 8.4e-24 83.8 0.1 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|662859292|ref|YP_006347933.2| - 7.5e-19 68.5 0.0 4.4e-17 62.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|662859292|ref|YP_006347933.2| - 1.5e-17 63.9 0.0 3.5e-12 46.4 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|662859292|ref|YP_006347933.2| - 4.2e-10 40.3 0.5 8.9e-06 26.2 0.0 3.0 2 1 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|662859292|ref|YP_006347933.2| - 2.8e-08 33.7 0.0 1e-06 28.6 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|662859292|ref|YP_006347933.2| - 4.1e-06 26.9 0.0 7.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|662859292|ref|YP_006347933.2| - 2.9e-05 24.3 0.2 9.7e-05 22.6 0.1 2.0 1 1 0 1 1 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|662859292|ref|YP_006347933.2| - 5.1e-05 23.3 0.0 0.0001 22.3 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|662859292|ref|YP_006347933.2| - 0.00011 22.0 0.0 0.0024 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|662859292|ref|YP_006347933.2| - 0.0003 21.1 0.2 0.34 11.2 0.1 2.6 1 1 0 2 2 2 2 AAA domain DNA_pol3_delta PF06144.13 gi|662859292|ref|YP_006347933.2| - 0.00038 20.3 0.0 0.00081 19.2 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit ResIII PF04851.15 gi|662859292|ref|YP_006347933.2| - 0.00045 20.3 0.0 0.0015 18.5 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|662859292|ref|YP_006347933.2| - 0.0016 18.0 0.0 0.0039 16.7 0.0 1.6 1 1 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|662859292|ref|YP_006347933.2| - 0.0018 17.7 0.0 0.33 10.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|662859292|ref|YP_006347933.2| - 0.0033 17.3 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|662859292|ref|YP_006347933.2| - 0.0045 16.7 0.0 0.97 9.1 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|662859292|ref|YP_006347933.2| - 0.0046 16.6 0.2 0.02 14.5 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|662859292|ref|YP_006347933.2| - 0.0075 16.8 0.0 0.025 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|662859292|ref|YP_006347933.2| - 0.015 15.0 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|662859292|ref|YP_006347933.2| - 0.016 15.2 0.0 0.12 12.3 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|662859292|ref|YP_006347933.2| - 0.018 15.5 0.0 0.041 14.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|662859292|ref|YP_006347933.2| - 0.019 15.1 0.0 0.062 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) SRP54 PF00448.22 gi|662859292|ref|YP_006347933.2| - 0.024 14.3 0.0 0.26 10.9 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|662859292|ref|YP_006347933.2| - 0.1 12.3 1.2 0.34 10.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|662859292|ref|YP_006347933.2| - 0.2 12.1 0.0 0.43 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase GAF_2 PF13185.6 gi|389845695|ref|YP_006347934.1| - 7.9e-25 87.8 3.6 1.3e-14 54.7 0.2 3.3 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.26 gi|389845695|ref|YP_006347934.1| - 1e-15 58.2 0.0 4e-15 56.3 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|389845695|ref|YP_006347934.1| - 1.7e-13 51.0 0.0 2.2e-07 31.3 0.0 2.6 2 0 0 2 2 2 2 GAF domain HisKA PF00512.25 gi|389845695|ref|YP_006347934.1| - 6e-11 42.2 3.3 9.6e-11 41.6 0.5 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|389845695|ref|YP_006347934.1| - 1.8e-10 41.6 0.1 6.9e-05 23.5 0.0 3.0 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.7 gi|389845695|ref|YP_006347934.1| - 4.6e-06 26.5 0.0 1.8e-05 24.6 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|389845695|ref|YP_006347934.1| - 1.4e-05 25.3 0.0 4.3e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|389845695|ref|YP_006347934.1| - 7.9e-05 22.6 0.0 0.00025 21.0 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|389845695|ref|YP_006347934.1| - 0.00011 22.4 0.1 0.00011 22.4 0.1 2.7 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|389845695|ref|YP_006347934.1| - 0.029 14.3 0.1 0.13 12.2 0.1 2.1 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|389845695|ref|YP_006347934.1| - 0.064 13.1 0.2 0.22 11.3 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TspO_MBR PF03073.15 gi|389845696|ref|YP_006347935.1| - 3.1e-41 140.6 19.6 3.7e-41 140.3 19.6 1.0 1 0 0 1 1 1 1 TspO/MBR family Cyt_bd_oxida_II PF02322.15 gi|389845696|ref|YP_006347935.1| - 0.061 12.7 17.8 0.075 12.4 17.8 1.1 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II DUF981 PF06168.11 gi|389845696|ref|YP_006347935.1| - 0.61 10.0 11.5 0.81 9.6 11.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF981) tRNA-synt_2c PF01411.19 gi|389845697|ref|YP_006347936.1| - 7.4e-120 401.0 0.0 9.4e-120 400.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|389845697|ref|YP_006347936.1| - 3.4e-17 63.2 1.4 7e-17 62.1 1.4 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|389845697|ref|YP_006347936.1| - 2.1e-12 46.9 0.8 4.2e-12 46.0 0.8 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Abhydrolase_1 PF00561.20 gi|389845698|ref|YP_006347937.1| - 5.5e-20 72.1 0.0 4.1e-12 46.3 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389845698|ref|YP_006347937.1| - 7.3e-18 64.7 0.0 1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|389845698|ref|YP_006347937.1| - 4.4e-16 60.2 12.7 5.1e-16 59.9 12.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|389845698|ref|YP_006347937.1| - 0.00021 21.4 0.0 0.00038 20.5 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|389845698|ref|YP_006347937.1| - 0.0016 18.3 0.0 0.95 9.2 0.0 2.2 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Ser_hydrolase PF06821.13 gi|389845698|ref|YP_006347937.1| - 0.011 15.6 3.0 0.24 11.2 0.1 2.5 2 1 0 2 2 2 0 Serine hydrolase Thioesterase PF00975.20 gi|389845698|ref|YP_006347937.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.3 1 1 0 1 1 1 0 Thioesterase domain Peptidase_S9 PF00326.21 gi|389845698|ref|YP_006347937.1| - 0.041 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Prolyl oligopeptidase family DLH PF01738.18 gi|389845698|ref|YP_006347937.1| - 0.059 12.9 0.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_5 PF12695.7 gi|389845698|ref|YP_006347937.1| - 0.068 12.9 0.0 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family Ndr PF03096.14 gi|389845698|ref|YP_006347937.1| - 0.2 10.4 0.0 0.29 9.8 0.0 1.2 1 0 0 1 1 1 0 Ndr family FSH1 PF03959.13 gi|389845698|ref|YP_006347937.1| - 0.21 11.2 0.0 0.26 10.9 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase (FSH1) GATase PF00117.28 gi|662859293|ref|YP_006347938.2| - 2.2e-21 76.5 0.0 2.8e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|662859293|ref|YP_006347938.2| - 4.8e-10 39.6 0.0 1.1e-09 38.4 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.16 gi|662859293|ref|YP_006347938.2| - 0.00041 19.4 0.0 0.00055 19.0 0.0 1.2 1 0 0 1 1 1 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|662859293|ref|YP_006347938.2| - 0.017 14.9 0.0 0.08 12.7 0.0 1.9 2 0 0 2 2 2 0 DJ-1/PfpI family GATase_3 PF07685.14 gi|662859293|ref|YP_006347938.2| - 0.04 13.5 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF4671 PF15710.5 gi|662859293|ref|YP_006347938.2| - 0.1 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4671) Acyl-CoA_dh_1 PF00441.24 gi|662859294|ref|YP_006347939.2| - 3.5e-33 114.9 1.0 4.7e-33 114.5 1.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|662859294|ref|YP_006347939.2| - 9.3e-25 87.5 0.0 2.3e-24 86.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|662859294|ref|YP_006347939.2| - 3.7e-24 84.8 0.1 7.4e-24 83.8 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|662859294|ref|YP_006347939.2| - 8.3e-12 45.5 2.5 1.3e-11 45.0 2.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|662859294|ref|YP_006347939.2| - 0.0027 17.4 0.3 0.011 15.4 0.3 1.8 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal PGF-CTERM PF18204.1 gi|389845702|ref|YP_006347941.1| - 3.8e-05 23.5 7.1 3.8e-05 23.5 7.1 2.5 2 1 0 2 2 2 1 PGF-CTERM motif ALMT PF11744.8 gi|389845702|ref|YP_006347941.1| - 0.036 12.9 1.5 0.047 12.5 1.5 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter RIFIN PF02009.16 gi|389845702|ref|YP_006347941.1| - 0.056 13.3 3.6 0.061 13.2 3.6 1.3 1 0 0 1 1 1 0 Rifin DUF1859 PF08948.10 gi|389845702|ref|YP_006347941.1| - 0.079 12.9 0.7 0.15 12.1 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1859) DUF4366 PF14283.6 gi|389845702|ref|YP_006347941.1| - 0.51 10.4 9.9 0.079 13.0 5.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) ABC2_membrane_3 PF12698.7 gi|389845702|ref|YP_006347941.1| - 0.98 8.5 4.4 1.2 8.2 4.4 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein ATF7IP_BD PF16788.5 gi|389845702|ref|YP_006347941.1| - 3.3 7.8 14.1 4.9 7.2 14.1 1.3 1 0 0 1 1 1 0 ATF-interacting protein binding domain DUF5305 PF17231.2 gi|389845702|ref|YP_006347941.1| - 7.9 5.8 15.6 1.4 8.2 10.4 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5305) PGF-CTERM PF18204.1 gi|389845703|ref|YP_006347942.1| - 6.5e-05 22.8 8.2 6.5e-05 22.8 8.2 2.1 2 0 0 2 2 2 1 PGF-CTERM motif Chlam_vir PF05475.11 gi|389845703|ref|YP_006347942.1| - 0.02 14.6 0.1 0.048 13.4 0.1 1.6 1 0 0 1 1 1 0 Pgp3 C-terminal domain Fer4_7 PF12838.7 gi|389845704|ref|YP_006347943.1| - 5.3e-13 49.3 19.7 3.6e-07 30.7 6.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389845704|ref|YP_006347943.1| - 4.3e-12 45.3 13.8 1.6e-07 30.8 5.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389845704|ref|YP_006347943.1| - 2e-09 37.1 14.1 1.6e-05 24.8 5.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|389845704|ref|YP_006347943.1| - 6.8e-08 32.6 4.4 1.9e-07 31.1 4.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389845704|ref|YP_006347943.1| - 9.4e-07 28.9 18.8 9.4e-05 22.4 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|389845704|ref|YP_006347943.1| - 1.8e-06 28.0 11.3 1.9e-05 24.7 11.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|389845704|ref|YP_006347943.1| - 6.8e-06 26.4 1.0 0.023 15.1 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389845704|ref|YP_006347943.1| - 1.2e-05 26.2 5.1 0.00068 20.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|389845704|ref|YP_006347943.1| - 3.1e-05 23.8 11.2 0.013 15.5 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|389845704|ref|YP_006347943.1| - 0.00018 22.0 2.2 0.11 13.1 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389845704|ref|YP_006347943.1| - 0.00028 21.2 1.6 0.00028 21.2 1.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|389845704|ref|YP_006347943.1| - 0.00062 20.5 11.1 0.0059 17.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|389845704|ref|YP_006347943.1| - 0.00074 20.0 14.1 0.025 15.1 14.1 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|389845704|ref|YP_006347943.1| - 0.0067 16.5 0.6 0.0086 16.2 0.6 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|389845704|ref|YP_006347943.1| - 0.011 15.9 3.9 0.011 15.9 3.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|389845704|ref|YP_006347943.1| - 1.6 9.5 15.4 63 4.4 15.4 3.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain Glyoxalase PF00903.25 gi|389845705|ref|YP_006347944.1| - 2.4e-11 43.9 0.0 2.9e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389845705|ref|YP_006347944.1| - 2.7e-08 34.0 0.0 5.7e-08 33.0 0.0 1.5 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|389845705|ref|YP_006347944.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase-like domain Pilin_N PF07790.11 gi|389845706|ref|YP_006347945.1| - 0.17 12.8 0.0 0.37 11.7 0.0 1.7 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Ferritin PF00210.24 gi|389845707|ref|YP_006347946.1| - 6.9e-25 87.6 1.0 7.9e-25 87.4 1.0 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|389845707|ref|YP_006347946.1| - 1.8e-07 31.6 0.5 2.2e-07 31.4 0.5 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF892 PF05974.12 gi|389845707|ref|YP_006347946.1| - 0.00027 21.0 3.0 0.00097 19.2 3.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin-like PF12902.7 gi|389845707|ref|YP_006347946.1| - 0.00069 19.6 0.1 0.00077 19.4 0.1 1.2 1 1 0 1 1 1 1 Ferritin-like Ferritin_2 PF13668.6 gi|389845707|ref|YP_006347946.1| - 0.0011 19.2 0.1 0.0013 19.0 0.1 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|389845707|ref|YP_006347946.1| - 0.029 14.7 1.8 2.6 8.4 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) DUF4439 PF14530.6 gi|389845707|ref|YP_006347946.1| - 0.03 15.0 0.2 0.058 14.1 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4439) Get5_C PF18514.1 gi|389845707|ref|YP_006347946.1| - 0.27 11.0 0.8 16 5.4 0.3 2.3 2 0 0 2 2 2 0 Get5 C-terminal domain CCG PF02754.16 gi|662859295|ref|YP_006347947.2| - 1.8e-17 63.3 0.0 9.6e-12 45.0 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|662859295|ref|YP_006347947.2| - 3e-10 40.4 3.8 3e-10 40.4 3.8 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|662859295|ref|YP_006347947.2| - 5.3e-10 39.3 9.5 2.9e-08 33.7 10.0 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|662859295|ref|YP_006347947.2| - 6.8e-10 38.3 13.8 8.3e-06 25.4 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|662859295|ref|YP_006347947.2| - 1.6e-08 34.6 7.6 1.8e-08 34.4 5.0 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|662859295|ref|YP_006347947.2| - 1.9e-08 34.8 6.5 1.9e-08 34.8 6.5 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|662859295|ref|YP_006347947.2| - 4.3e-07 29.6 12.4 0.00018 21.4 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|662859295|ref|YP_006347947.2| - 1.3e-05 25.7 6.3 1.3e-05 25.7 6.3 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|662859295|ref|YP_006347947.2| - 6.4e-05 23.2 16.9 0.0043 17.4 0.9 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|662859295|ref|YP_006347947.2| - 0.00022 21.2 3.8 0.00022 21.2 3.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|662859295|ref|YP_006347947.2| - 0.00058 20.7 14.7 0.0052 17.7 13.1 2.6 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|662859295|ref|YP_006347947.2| - 0.00098 19.2 11.7 0.047 13.8 0.8 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|662859295|ref|YP_006347947.2| - 0.0012 19.7 3.7 0.15 13.0 0.3 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 gi|662859295|ref|YP_006347947.2| - 0.014 14.9 6.0 0.023 14.2 6.0 1.3 1 0 0 1 1 1 0 Nitrate reductase gamma subunit Fer4_13 PF13370.6 gi|662859295|ref|YP_006347947.2| - 1.8 9.2 14.6 9.4 6.9 4.2 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|662859295|ref|YP_006347947.2| - 6.3 7.0 11.3 4.3 7.6 2.0 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain CbiQ PF02361.16 gi|389845709|ref|YP_006347948.1| - 8.8e-15 54.9 7.4 2.6e-14 53.4 7.4 1.7 1 1 0 1 1 1 1 Cobalt transport protein QCR10 PF09796.9 gi|389845709|ref|YP_006347948.1| - 0.021 14.9 0.1 0.021 14.9 0.1 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) ABC_tran PF00005.27 gi|389845710|ref|YP_006347949.1| - 2e-26 93.1 0.0 2.9e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389845710|ref|YP_006347949.1| - 3.4e-07 30.4 0.0 0.026 14.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|389845710|ref|YP_006347949.1| - 1e-06 29.2 0.2 1.7e-06 28.5 0.2 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|389845710|ref|YP_006347949.1| - 0.00027 20.6 0.0 0.00047 19.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389845710|ref|YP_006347949.1| - 0.00062 19.3 0.0 0.0027 17.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|389845710|ref|YP_006347949.1| - 0.00097 19.1 0.0 0.0015 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|389845710|ref|YP_006347949.1| - 0.0019 17.5 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|389845710|ref|YP_006347949.1| - 0.0023 18.1 0.1 0.011 15.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|389845710|ref|YP_006347949.1| - 0.0024 17.5 1.1 0.05 13.2 0.1 2.6 2 2 0 2 2 2 1 AAA domain cobW PF02492.19 gi|389845710|ref|YP_006347949.1| - 0.0061 16.2 0.1 0.033 13.8 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|389845710|ref|YP_006347949.1| - 0.0072 16.1 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|389845710|ref|YP_006347949.1| - 0.0091 15.9 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.6 gi|389845710|ref|YP_006347949.1| - 0.01 16.1 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|389845710|ref|YP_006347949.1| - 0.012 15.8 0.0 0.25 11.6 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|389845710|ref|YP_006347949.1| - 0.014 14.8 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|389845710|ref|YP_006347949.1| - 0.016 14.5 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.6 gi|389845710|ref|YP_006347949.1| - 0.017 15.4 0.1 0.029 14.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|389845710|ref|YP_006347949.1| - 0.042 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|389845710|ref|YP_006347949.1| - 0.049 14.1 0.0 0.075 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|389845710|ref|YP_006347949.1| - 0.055 14.0 0.0 0.19 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|389845710|ref|YP_006347949.1| - 0.078 13.3 0.1 0.13 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|389845710|ref|YP_006347949.1| - 0.08 12.9 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_7 PF12775.7 gi|389845710|ref|YP_006347949.1| - 0.1 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|389845710|ref|YP_006347949.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|389845710|ref|YP_006347949.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|389845710|ref|YP_006347949.1| - 0.16 12.0 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389845710|ref|YP_006347949.1| - 0.18 11.7 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|389845710|ref|YP_006347949.1| - 0.28 10.9 0.0 0.34 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.8 gi|389845710|ref|YP_006347949.1| - 0.35 8.3 0.0 0.46 7.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BioY PF02632.14 gi|389845711|ref|YP_006347950.1| - 1.2e-33 116.0 23.6 1.8e-33 115.4 23.6 1.2 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 gi|389845711|ref|YP_006347950.1| - 0.00011 22.4 20.7 0.00015 21.9 20.7 1.2 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ATP-synt_A PF00119.20 gi|389845711|ref|YP_006347950.1| - 1.4 8.8 10.3 0.062 13.2 2.4 2.0 2 0 0 2 2 2 0 ATP synthase A chain MCM PF00493.23 gi|389845713|ref|YP_006347952.1| - 3.8e-79 264.9 0.1 1.3e-34 119.3 0.0 3.4 3 0 0 3 3 3 3 MCM P-loop domain LAGLIDADG_3 PF14528.6 gi|389845713|ref|YP_006347952.1| - 2.1e-52 175.3 0.4 7.8e-18 64.6 0.1 5.3 5 0 0 5 5 5 4 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|389845713|ref|YP_006347952.1| - 5.8e-45 152.5 0.0 3.1e-21 75.7 0.0 3.6 3 0 0 3 3 3 3 Intein splicing domain MCM_OB PF17207.3 gi|389845713|ref|YP_006347952.1| - 1.3e-33 115.5 0.1 2.5e-33 114.6 0.1 1.5 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|389845713|ref|YP_006347952.1| - 1.4e-26 92.7 2.9 9.1e-26 90.1 0.3 3.0 3 0 0 3 3 2 1 MCM AAA-lid domain HTH_3 PF01381.22 gi|389845713|ref|YP_006347952.1| - 5.8e-12 45.5 0.0 8.7e-07 28.9 0.0 3.8 3 0 0 3 3 3 2 Helix-turn-helix HTH_31 PF13560.6 gi|389845713|ref|YP_006347952.1| - 6.6e-09 36.0 13.1 4.5e-06 26.9 0.5 4.9 5 0 0 5 5 5 2 Helix-turn-helix domain MCM_N PF14551.6 gi|389845713|ref|YP_006347952.1| - 7.3e-08 32.9 3.4 1.2e-07 32.2 1.6 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Hint PF01079.20 gi|389845713|ref|YP_006347952.1| - 0.00048 19.7 0.0 4.6 6.7 0.0 4.0 3 1 0 3 3 3 1 Hint module HTH_26 PF13443.6 gi|389845713|ref|YP_006347952.1| - 0.00055 20.3 0.0 2.4 8.7 0.0 3.1 2 0 0 2 2 2 2 Cro/C1-type HTH DNA-binding domain HTH_Tnp_4 PF13613.6 gi|389845713|ref|YP_006347952.1| - 0.0082 15.9 0.1 0.029 14.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix of DDE superfamily endonuclease Mg_chelatase PF01078.21 gi|389845713|ref|YP_006347952.1| - 0.0086 15.5 0.1 3.6 6.9 0.0 3.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI HTH_Tnp_ISL3 PF13542.6 gi|389845713|ref|YP_006347952.1| - 0.0091 15.4 0.0 0.024 14.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_19 PF12844.7 gi|389845713|ref|YP_006347952.1| - 0.012 15.7 0.0 0.83 9.7 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|389845713|ref|YP_006347952.1| - 0.015 15.2 0.6 4.5 7.2 0.0 4.6 5 0 0 5 5 5 0 MarR family HTH_23 PF13384.6 gi|389845713|ref|YP_006347952.1| - 0.023 14.5 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_38 PF13936.6 gi|389845713|ref|YP_006347952.1| - 0.079 12.7 0.0 0.26 11.1 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|389845713|ref|YP_006347952.1| - 0.12 12.2 0.0 5.1 7.0 0.0 3.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TPM_phosphatase PF04536.14 gi|389845714|ref|YP_006347953.1| - 0.0091 16.2 0.2 0.011 15.9 0.2 1.2 1 0 0 1 1 1 1 TPM domain HTH_17 PF12728.7 gi|389845715|ref|YP_006347954.1| - 0.14 12.4 0.1 0.3 11.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Snapin_Pallidin PF14712.6 gi|389845716|ref|YP_006347955.1| - 0.013 15.9 0.6 0.2 12.1 0.1 2.2 1 1 1 2 2 2 0 Snapin/Pallidin BBP1_C PF15272.6 gi|389845716|ref|YP_006347955.1| - 0.24 11.2 3.5 0.32 10.8 2.5 1.7 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal XhlA PF10779.9 gi|389845716|ref|YP_006347955.1| - 1.2 9.4 3.6 26 5.1 0.8 3.0 2 1 1 3 3 3 0 Haemolysin XhlA Atg14 PF10186.9 gi|389845716|ref|YP_006347955.1| - 3.1 6.8 6.4 9.9 5.1 6.1 1.6 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2188 PF09954.9 gi|389845716|ref|YP_006347955.1| - 3.2 8.0 8.1 19 5.5 3.9 2.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) DUF4407 PF14362.6 gi|389845716|ref|YP_006347955.1| - 3.4 6.9 9.2 4.8 6.4 9.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Spc7 PF08317.11 gi|389845716|ref|YP_006347955.1| - 4.1 6.2 7.9 12 4.7 6.9 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein OrfB_IS605 PF01385.19 gi|389845716|ref|YP_006347955.1| - 4.4 7.6 6.3 1.7 8.9 2.6 2.0 1 1 1 2 2 2 0 Probable transposase ABC_tran_CTD PF16326.5 gi|389845716|ref|YP_006347955.1| - 6.4 7.1 11.5 3.4 8.0 3.1 2.6 2 1 1 3 3 3 0 ABC transporter C-terminal domain DUF3879 PF12995.7 gi|389845717|ref|YP_006347956.1| - 0.097 12.4 0.0 0.098 12.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3879) VGCC_beta4Aa_N PF12052.8 gi|389845718|ref|YP_006347957.1| - 0.78 9.9 4.8 0.84 9.8 2.8 2.2 1 1 1 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal ParA PF10609.9 gi|389845719|ref|YP_006347958.1| - 4.1e-11 42.8 0.3 3.3e-06 26.8 0.1 3.0 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|389845719|ref|YP_006347958.1| - 9.4e-10 38.7 0.1 7.6e-09 35.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389845719|ref|YP_006347958.1| - 3.8e-09 36.7 0.0 7.6e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|389845719|ref|YP_006347958.1| - 0.00044 19.8 0.5 1.2 8.6 0.0 3.0 3 0 0 3 3 3 1 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|389845719|ref|YP_006347958.1| - 0.0015 18.3 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|389845719|ref|YP_006347958.1| - 0.0019 17.7 0.1 1.8 7.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|389845719|ref|YP_006347958.1| - 0.0038 16.4 0.1 0.018 14.3 0.3 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|389845719|ref|YP_006347958.1| - 0.0051 16.1 0.3 1 8.6 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ AAA_33 PF13671.6 gi|389845719|ref|YP_006347958.1| - 0.0098 16.1 0.0 0.02 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|389845719|ref|YP_006347958.1| - 0.072 13.6 0.0 0.13 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|389845719|ref|YP_006347958.1| - 0.074 12.9 0.2 0.47 10.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|389845719|ref|YP_006347958.1| - 0.086 12.4 1.4 0.99 8.9 0.4 2.3 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|389845719|ref|YP_006347958.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TFIIB PF00382.19 gi|662859296|ref|YP_006347959.2| - 1.3e-32 111.6 0.1 1.5e-16 60.2 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|662859296|ref|YP_006347959.2| - 8.4e-12 44.4 1.3 1.6e-11 43.5 1.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|662859296|ref|YP_006347959.2| - 0.0012 18.9 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|662859296|ref|YP_006347959.2| - 0.036 13.5 2.3 0.077 12.4 2.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain HTH_28 PF13518.6 gi|389845721|ref|YP_006347960.1| - 0.0076 16.4 0.3 0.12 12.5 0.1 2.4 1 1 1 2 2 2 2 Helix-turn-helix domain CBP_BcsQ PF06564.12 gi|389845722|ref|YP_006347961.1| - 3.2e-06 26.8 0.2 8.4e-06 25.4 0.2 1.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ CbiA PF01656.23 gi|389845722|ref|YP_006347961.1| - 0.00055 20.0 0.0 0.00058 19.9 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|389845722|ref|YP_006347961.1| - 0.001 19.0 0.0 0.0046 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|389845722|ref|YP_006347961.1| - 0.0086 15.4 1.8 0.14 11.4 0.2 2.4 2 1 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|389845722|ref|YP_006347961.1| - 0.01 15.3 0.9 0.025 14.0 0.2 1.9 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase HIT PF01230.23 gi|389845723|ref|YP_006347962.1| - 6.2e-27 94.2 0.1 7.6e-27 93.9 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|389845723|ref|YP_006347962.1| - 2.6e-13 50.4 0.0 3.2e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding GalP_UDP_tr_C PF02744.17 gi|389845723|ref|YP_006347962.1| - 0.00041 20.1 0.0 0.00054 19.7 0.0 1.1 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain CwfJ_C_1 PF04677.15 gi|389845723|ref|YP_006347962.1| - 0.0018 18.2 0.0 0.0028 17.5 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 F-box-like_2 PF13013.6 gi|389845723|ref|YP_006347962.1| - 0.14 12.1 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 F-box-like domain UDG PF03167.19 gi|389845724|ref|YP_006347963.1| - 6e-24 84.8 0.0 7.4e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Pribosyltran_N PF13793.6 gi|389845726|ref|YP_006347965.1| - 2.6e-20 72.5 0.0 8.3e-20 70.9 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|389845726|ref|YP_006347965.1| - 4.1e-15 55.6 0.5 2.6e-14 53.0 0.3 2.2 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|389845726|ref|YP_006347965.1| - 2.4e-08 34.2 0.5 4.8e-08 33.2 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|389845726|ref|YP_006347965.1| - 0.0002 20.9 0.0 0.00031 20.2 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PAS_7 PF12860.7 gi|389845726|ref|YP_006347965.1| - 0.0093 16.1 0.0 0.99 9.6 0.0 2.4 1 1 1 2 2 2 1 PAS fold Glyco_hydro_42M PF08532.10 gi|389845726|ref|YP_006347965.1| - 0.011 15.3 0.0 0.03 13.8 0.0 1.7 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain SWIM PF04434.17 gi|389845728|ref|YP_006347967.1| - 0.0028 17.3 0.1 0.005 16.5 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger TRM PF02005.16 gi|389845729|ref|YP_006347968.1| - 5.7e-92 308.8 0.0 6.4e-92 308.6 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|389845729|ref|YP_006347968.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MTS PF05175.14 gi|389845729|ref|YP_006347968.1| - 0.021 14.4 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|389845729|ref|YP_006347968.1| - 0.035 14.8 0.1 0.1 13.3 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|389845729|ref|YP_006347968.1| - 0.043 13.5 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Ferredoxin_N PF16947.5 gi|389845729|ref|YP_006347968.1| - 0.069 13.3 0.0 0.92 9.7 0.0 2.7 2 0 0 2 2 2 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Zn-ribbon_8 PF09723.10 gi|389845729|ref|YP_006347968.1| - 0.086 13.0 1.5 0.2 11.8 1.5 1.6 1 0 0 1 1 1 0 Zinc ribbon domain PrmA PF06325.13 gi|389845729|ref|YP_006347968.1| - 0.14 11.5 0.2 0.2 11.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PAP2 PF01569.21 gi|389845732|ref|YP_006347971.1| - 4.9e-18 65.2 5.6 4.9e-18 65.2 5.6 3.1 2 2 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|389845732|ref|YP_006347971.1| - 7.8e-08 32.2 12.0 7.8e-08 32.2 12.0 2.1 2 2 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|389845732|ref|YP_006347971.1| - 0.012 16.2 1.2 0.012 16.2 1.2 2.2 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Methyltransf_25 PF13649.6 gi|389845733|ref|YP_006347972.1| - 3.8e-19 69.2 0.0 1.1e-18 67.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389845733|ref|YP_006347972.1| - 1.8e-18 66.9 0.0 3.1e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389845733|ref|YP_006347972.1| - 1.2e-12 47.9 0.0 1.5e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389845733|ref|YP_006347972.1| - 2.9e-11 43.5 0.0 4.4e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389845733|ref|YP_006347972.1| - 6.3e-09 36.5 0.0 1.3e-08 35.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389845733|ref|YP_006347972.1| - 2e-07 30.6 0.0 3.2e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|389845733|ref|YP_006347972.1| - 4.3e-05 23.0 0.0 5.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|389845733|ref|YP_006347972.1| - 0.0001 22.2 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.11 gi|389845733|ref|YP_006347972.1| - 0.00039 20.1 0.0 0.045 13.4 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CheR PF01739.18 gi|389845733|ref|YP_006347972.1| - 0.0027 17.2 0.0 0.018 14.5 0.0 1.9 2 0 0 2 2 2 1 CheR methyltransferase, SAM binding domain MTS PF05175.14 gi|389845733|ref|YP_006347972.1| - 0.027 14.0 0.0 0.058 12.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain MetW PF07021.12 gi|389845733|ref|YP_006347972.1| - 0.076 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|389845733|ref|YP_006347972.1| - 0.1 11.1 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Gln-synt_C PF00120.24 gi|662859299|ref|YP_006347973.2| - 1.9e-139 464.5 0.0 2.4e-139 464.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|662859299|ref|YP_006347973.2| - 1.2e-32 111.4 0.6 3.1e-31 107.0 0.0 2.5 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|662859299|ref|YP_006347973.2| - 0.00066 19.5 0.0 0.0052 16.6 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain AsnC_trans_reg PF01037.21 gi|389845735|ref|YP_006347974.1| - 7.1e-13 48.3 0.1 1.3e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|389845735|ref|YP_006347974.1| - 3.1e-12 45.8 0.1 7.3e-12 44.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|389845735|ref|YP_006347974.1| - 1.8e-08 34.1 0.1 4.2e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|389845735|ref|YP_006347974.1| - 2.3e-08 33.7 0.3 4.4e-08 32.8 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|389845735|ref|YP_006347974.1| - 5.7e-07 29.5 0.5 1.9e-06 27.8 0.1 2.0 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|389845735|ref|YP_006347974.1| - 8.5e-07 28.8 0.1 3e-06 27.1 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|389845735|ref|YP_006347974.1| - 5.9e-05 23.1 0.0 0.00021 21.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|389845735|ref|YP_006347974.1| - 7e-05 22.6 0.0 0.00016 21.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|389845735|ref|YP_006347974.1| - 7.4e-05 22.3 0.0 0.00017 21.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|389845735|ref|YP_006347974.1| - 0.00013 21.7 0.1 0.00044 20.0 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_DeoR PF08220.12 gi|389845735|ref|YP_006347974.1| - 0.00014 21.5 0.1 0.00044 19.9 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389845735|ref|YP_006347974.1| - 0.00016 21.5 0.0 0.00029 20.8 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|389845735|ref|YP_006347974.1| - 0.00025 20.8 0.1 0.0011 18.9 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|389845735|ref|YP_006347974.1| - 0.00028 20.8 0.1 0.00091 19.1 0.0 1.8 3 0 0 3 3 1 1 MarR family HTH_IclR PF09339.10 gi|389845735|ref|YP_006347974.1| - 0.0015 18.3 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389845735|ref|YP_006347974.1| - 0.004 17.3 0.0 0.0086 16.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_50 PF18024.1 gi|389845735|ref|YP_006347974.1| - 0.0045 16.6 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|389845735|ref|YP_006347974.1| - 0.0068 16.2 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|389845735|ref|YP_006347974.1| - 0.0076 16.8 0.0 0.025 15.1 0.0 1.8 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_27 PF13463.6 gi|389845735|ref|YP_006347974.1| - 0.0092 16.5 0.2 0.073 13.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|389845735|ref|YP_006347974.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain HTH_47 PF16221.5 gi|389845735|ref|YP_006347974.1| - 0.02 14.4 0.1 0.04 13.5 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|389845735|ref|YP_006347974.1| - 0.032 13.6 0.0 0.069 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|389845735|ref|YP_006347974.1| - 0.039 14.0 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix GYD PF08734.11 gi|389845735|ref|YP_006347974.1| - 0.043 13.8 0.0 0.082 12.9 0.0 1.6 2 0 0 2 2 1 0 GYD domain Rrf2 PF02082.20 gi|389845735|ref|YP_006347974.1| - 0.048 14.0 0.0 0.16 12.3 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_41 PF14502.6 gi|389845735|ref|YP_006347974.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|389845735|ref|YP_006347974.1| - 0.06 14.0 0.2 1.1 10.0 0.0 2.3 2 1 0 2 2 2 0 Replication protein A C terminal HTH_36 PF13730.6 gi|389845735|ref|YP_006347974.1| - 0.066 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|389845735|ref|YP_006347974.1| - 0.07 13.6 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|389845735|ref|YP_006347974.1| - 0.08 12.5 0.1 0.29 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_1 PF00126.27 gi|389845735|ref|YP_006347974.1| - 0.09 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|389845735|ref|YP_006347974.1| - 0.091 12.3 0.2 0.23 11.0 0.0 1.7 2 0 0 2 2 1 0 CodY helix-turn-helix domain HTH_34 PF13601.6 gi|389845735|ref|YP_006347974.1| - 0.1 12.8 0.1 0.28 11.4 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|389845735|ref|YP_006347974.1| - 0.13 12.3 0.0 0.34 11.0 0.0 1.7 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_7 PF02796.15 gi|389845735|ref|YP_006347974.1| - 0.17 12.0 0.0 0.44 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DZR PF12773.7 gi|662859300|ref|YP_009034585.1| - 0.0045 17.0 0.6 0.0064 16.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|662859300|ref|YP_009034585.1| - 0.0051 16.8 0.5 0.0071 16.3 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbons Sgf11 PF08209.11 gi|662859300|ref|YP_009034585.1| - 0.01 15.4 1.6 0.41 10.3 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) HypA PF01155.19 gi|662859300|ref|YP_009034585.1| - 0.015 15.3 0.5 0.017 15.1 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Di19 PF05605.12 gi|662859300|ref|YP_009034585.1| - 0.021 15.1 0.5 0.051 13.9 0.1 1.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_10 PF10058.9 gi|662859300|ref|YP_009034585.1| - 0.048 13.4 1.7 0.11 12.2 1.7 1.6 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD PF00628.29 gi|662859300|ref|YP_009034585.1| - 0.05 13.5 2.0 0.11 12.4 2.0 1.5 1 1 0 1 1 1 0 PHD-finger Cys_rich_CPXG PF14255.6 gi|662859300|ref|YP_009034585.1| - 0.067 13.1 1.9 0.55 10.2 0.2 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.6 gi|662859300|ref|YP_009034585.1| - 0.07 12.6 1.1 0.98 8.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain C1_4 PF07975.12 gi|662859300|ref|YP_009034585.1| - 0.086 13.1 0.9 0.15 12.3 0.9 1.4 1 1 0 1 1 1 0 TFIIH C1-like domain PyrI_C PF02748.15 gi|662859300|ref|YP_009034585.1| - 0.093 12.7 0.5 0.093 12.7 0.5 1.9 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2HC_2 PF13913.6 gi|662859300|ref|YP_009034585.1| - 0.12 12.3 3.0 4.2 7.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn_ribbon_SprT PF17283.2 gi|662859300|ref|YP_009034585.1| - 0.14 12.1 4.8 0.68 9.9 4.8 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF983 PF06170.12 gi|662859300|ref|YP_009034585.1| - 0.17 12.3 0.6 7.1 7.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Zn_Tnp_IS1595 PF12760.7 gi|662859300|ref|YP_009034585.1| - 0.21 11.6 4.4 0.9 9.6 4.7 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2757 PF10955.8 gi|662859300|ref|YP_009034585.1| - 0.22 11.8 3.3 6.9 7.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) zf-C2H2_11 PF16622.5 gi|662859300|ref|YP_009034585.1| - 0.25 11.1 1.3 0.82 9.5 0.2 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type C1_2 PF03107.16 gi|662859300|ref|YP_009034585.1| - 0.32 11.4 4.9 4.5 7.7 4.9 2.0 1 1 0 1 1 1 0 C1 domain zf-H2C2_2 PF13465.6 gi|662859300|ref|YP_009034585.1| - 3.3 8.3 6.4 4.8 7.8 2.6 2.2 1 1 1 2 2 2 0 Zinc-finger double domain Peptidase_M29 PF02073.15 gi|662859301|ref|YP_006347975.2| - 1e-71 241.9 0.3 1.3e-71 241.6 0.3 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Beta_elim_lyase PF01212.21 gi|389845737|ref|YP_006347976.1| - 5.1e-89 298.4 0.5 6.1e-89 298.2 0.5 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|389845737|ref|YP_006347976.1| - 2.8e-05 23.6 0.0 0.0052 16.1 0.0 2.5 3 0 0 3 3 3 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|389845737|ref|YP_006347976.1| - 0.0075 14.8 0.0 0.011 14.2 0.0 1.4 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme FdsD PF11390.8 gi|389845737|ref|YP_006347976.1| - 0.085 13.2 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 NADH-dependant formate dehydrogenase delta subunit FdsD Cation_efflux PF01545.21 gi|389845738|ref|YP_006347977.1| - 4.2e-28 98.4 4.4 8.7e-28 97.4 4.4 1.5 1 1 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|389845738|ref|YP_006347977.1| - 1.3e-07 31.6 0.1 2.1e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF4131 PF13567.6 gi|389845738|ref|YP_006347977.1| - 0.015 14.9 0.1 0.56 9.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TrbC PF04956.13 gi|389845738|ref|YP_006347977.1| - 0.019 15.2 2.6 0.068 13.4 2.6 1.9 1 0 0 1 1 1 0 TrbC/VIRB2 family CopD PF05425.13 gi|389845738|ref|YP_006347977.1| - 1.4 9.3 7.9 0.15 12.5 2.2 2.3 2 1 1 3 3 3 0 Copper resistance protein D Metallophos_2 PF12850.7 gi|389845740|ref|YP_006347979.1| - 9.6e-25 87.7 0.1 1.2e-24 87.4 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|389845740|ref|YP_006347979.1| - 3.3e-07 31.0 0.2 0.00082 19.9 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase HTH_20 PF12840.7 gi|389845741|ref|YP_006347980.1| - 7.2e-12 45.2 0.2 1.7e-11 44.0 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389845741|ref|YP_006347980.1| - 4.9e-05 23.1 0.1 0.00012 21.9 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|389845741|ref|YP_006347980.1| - 7.3e-05 22.5 0.1 0.00094 19.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|389845741|ref|YP_006347980.1| - 0.0029 17.1 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389845741|ref|YP_006347980.1| - 0.019 14.9 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|389845741|ref|YP_006347980.1| - 0.16 11.9 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2513 PF10711.9 gi|389845741|ref|YP_006347980.1| - 0.2 12.0 0.0 0.38 11.1 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PHO4 PF01384.20 gi|389845743|ref|YP_006347982.1| - 5.3e-45 153.9 36.6 5.3e-45 153.9 36.6 1.4 1 1 0 1 1 1 1 Phosphate transporter family DUF21 PF01595.20 gi|389845744|ref|YP_006347983.1| - 1.7e-48 164.7 0.9 2.4e-48 164.1 0.9 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|389845744|ref|YP_006347983.1| - 2.2e-21 75.7 2.9 5e-21 74.5 2.9 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|389845744|ref|YP_006347983.1| - 1.5e-10 41.4 2.2 0.00051 20.4 0.0 2.6 2 0 0 2 2 2 2 CBS domain Rrp44_S1 PF17215.3 gi|389845744|ref|YP_006347983.1| - 0.11 12.4 0.4 9.2 6.3 0.1 2.6 2 0 0 2 2 2 0 S1 domain GST_N_3 PF13417.6 gi|389845745|ref|YP_006347984.1| - 5e-15 55.7 0.0 5.5e-15 55.5 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|389845745|ref|YP_006347984.1| - 3.8e-14 52.6 0.0 5.4e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|389845745|ref|YP_006347984.1| - 4.8e-14 52.4 0.0 5.6e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|389845745|ref|YP_006347984.1| - 1.7e-05 25.1 0.0 2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|389845745|ref|YP_006347984.1| - 0.082 13.3 0.0 0.1 13.0 0.0 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Tom37 PF10568.9 gi|389845745|ref|YP_006347984.1| - 0.15 12.4 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein AhpC-TSA PF00578.21 gi|389845746|ref|YP_006347985.1| - 1.4e-16 60.5 0.0 1.8e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|389845746|ref|YP_006347985.1| - 3.3e-08 33.4 0.0 5.9e-08 32.5 0.0 1.3 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|389845746|ref|YP_006347985.1| - 0.13 12.4 0.0 1.5 9.0 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.18 gi|389845747|ref|YP_006347986.1| - 8.2e-50 168.8 0.0 9.4e-50 168.6 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF2957 PF11170.8 gi|389845747|ref|YP_006347986.1| - 0.11 11.3 0.1 0.16 10.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2957) Cas_Cas4 PF01930.17 gi|389845748|ref|YP_006347987.1| - 3.8e-06 27.1 0.0 5.5e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 Spermine_synth PF01564.17 gi|389845749|ref|YP_006347988.1| - 6.2e-11 42.0 0.0 9.4e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|389845749|ref|YP_006347988.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF1453 PF07301.11 gi|389845750|ref|YP_006347989.1| - 0.051 13.6 1.4 0.053 13.5 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) CrgA PF06781.12 gi|389845750|ref|YP_006347989.1| - 0.92 9.6 4.0 1.2 9.2 4.0 1.2 1 0 0 1 1 1 0 Cell division protein CrgA SHOCT PF09851.9 gi|389845752|ref|YP_006347991.1| - 4.2e-06 26.3 0.0 5.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|389845752|ref|YP_006347991.1| - 0.00065 19.7 0.3 0.00092 19.2 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) TALPID3 PF15324.6 gi|389845752|ref|YP_006347991.1| - 0.0074 14.0 0.2 0.0074 14.0 0.2 1.0 1 0 0 1 1 1 1 Hedgehog signalling target PIN PF01850.21 gi|389845753|ref|YP_006347992.1| - 1.3e-09 38.6 0.0 1.7e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain VAPB_antitox PF02697.14 gi|389845754|ref|YP_006347993.1| - 1.5e-17 64.1 0.3 1.7e-17 63.9 0.3 1.0 1 0 0 1 1 1 1 Putative antitoxin Fe-S_biosyn PF01521.20 gi|389845754|ref|YP_006347993.1| - 0.012 15.8 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 0 Iron-sulphur cluster biosynthesis DUF4114 PF13448.6 gi|389845754|ref|YP_006347993.1| - 0.11 13.3 0.1 5.9 7.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4114) CitMHS PF03600.16 gi|389845757|ref|YP_006347996.1| - 3.4e-64 216.9 9.0 1.9e-63 214.4 0.9 1.6 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|389845757|ref|YP_006347996.1| - 2.9e-22 79.4 35.4 6.9e-14 51.7 13.3 3.2 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|389845757|ref|YP_006347996.1| - 2.3e-20 72.2 3.8 1.9e-12 46.8 0.3 2.5 2 0 0 2 2 2 2 TrkA-C domain DEAD PF00270.29 gi|389845758|ref|YP_006347997.1| - 2.3e-23 82.9 0.0 4.5e-23 81.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|389845758|ref|YP_006347997.1| - 7.7e-15 55.2 0.0 1.9e-14 53.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|389845758|ref|YP_006347997.1| - 5.6e-11 42.7 0.0 9.7e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cupin_2 PF07883.11 gi|662859302|ref|YP_006347998.2| - 7e-18 64.1 0.1 8.8e-18 63.8 0.1 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|662859302|ref|YP_006347998.2| - 3.8e-07 29.8 0.0 5.7e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|662859302|ref|YP_006347998.2| - 1.2e-06 28.5 0.0 1.5e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|662859302|ref|YP_006347998.2| - 0.0006 19.7 0.0 0.00075 19.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase ARD PF03079.14 gi|662859302|ref|YP_006347998.2| - 0.00097 19.3 0.1 0.0013 18.9 0.1 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_3 PF05899.12 gi|662859302|ref|YP_006347998.2| - 0.0043 16.7 0.0 0.006 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|662859302|ref|YP_006347998.2| - 0.011 16.0 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like CBS PF00571.28 gi|389845760|ref|YP_006347999.1| - 2.9e-22 78.9 5.8 2.5e-13 50.3 0.5 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|389845760|ref|YP_006347999.1| - 2.1e-13 50.1 11.0 1.6e-08 34.1 0.1 3.0 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|389845760|ref|YP_006347999.1| - 1.5e-06 28.0 0.5 1.5e-06 28.0 0.5 2.8 1 1 1 3 3 3 1 Peptidase M50B-like DUF3267 PF11667.8 gi|389845760|ref|YP_006347999.1| - 0.013 15.8 0.7 0.013 15.8 0.7 2.4 3 0 0 3 3 3 0 Putative zincin peptidase GAF PF01590.26 gi|389845760|ref|YP_006347999.1| - 0.092 13.4 0.0 3.7 8.2 0.0 2.2 1 1 1 2 2 2 0 GAF domain MoCF_biosynth PF00994.24 gi|389845761|ref|YP_006348000.1| - 6e-32 110.3 0.1 8.9e-32 109.7 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF1059 PF06348.11 gi|389845762|ref|YP_006348001.1| - 3.4e-09 36.8 0.5 3.6e-09 36.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) RHH_1 PF01402.21 gi|389845764|ref|YP_006348003.1| - 8.3e-05 22.4 0.2 8.3e-05 22.4 0.2 2.2 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|389845764|ref|YP_006348003.1| - 0.0033 17.0 0.1 0.0072 15.9 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|389845764|ref|YP_006348003.1| - 0.0052 17.3 0.0 0.012 16.2 0.0 1.6 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system DUF2353 PF09789.9 gi|389845764|ref|YP_006348003.1| - 0.018 14.4 1.2 0.019 14.3 1.2 1.2 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF4047 PF13256.6 gi|389845764|ref|YP_006348003.1| - 0.063 13.5 0.3 0.086 13.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) Noc2 PF03715.13 gi|389845764|ref|YP_006348003.1| - 0.082 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Noc2p family zf-Mss51 PF13824.6 gi|389845764|ref|YP_006348003.1| - 0.81 9.8 4.2 0.85 9.8 1.8 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Notch PF00066.17 gi|389845766|ref|YP_006348005.1| - 0.14 12.7 0.3 0.21 12.1 0.3 1.3 1 0 0 1 1 1 0 LNR domain NTP_transferase PF00483.23 gi|389845768|ref|YP_006348007.1| - 2.2e-40 138.8 0.0 2.9e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389845768|ref|YP_006348007.1| - 1.8e-08 34.9 6.7 1.5e-07 31.9 6.6 2.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|389845768|ref|YP_006348007.1| - 0.00016 21.6 0.3 0.00026 20.9 0.3 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase adh_short_C2 PF13561.6 gi|662859303|ref|YP_006348008.2| - 9.1e-51 172.7 0.1 1.4e-50 172.0 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|662859303|ref|YP_006348008.2| - 1.1e-37 129.4 0.1 1.5e-37 129.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|662859303|ref|YP_006348008.2| - 1.5e-10 41.2 0.1 2.4e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|662859303|ref|YP_006348008.2| - 0.034 14.0 0.1 0.055 13.4 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H-binding F420_oxidored PF03807.17 gi|662859303|ref|YP_006348008.2| - 0.039 14.5 0.0 0.11 13.1 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TFX_C PF14601.6 gi|389845770|ref|YP_006348009.1| - 4.3e-31 106.7 0.1 6e-31 106.2 0.1 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|389845770|ref|YP_006348009.1| - 1.9e-05 24.1 0.3 1.9e-05 24.1 0.3 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|389845770|ref|YP_006348009.1| - 0.00012 21.6 0.1 0.00019 20.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|389845770|ref|YP_006348009.1| - 0.00031 20.3 0.1 0.00056 19.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|389845770|ref|YP_006348009.1| - 0.018 14.8 0.1 0.031 14.1 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|389845770|ref|YP_006348009.1| - 0.027 14.4 0.1 0.05 13.6 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_31 PF13560.6 gi|389845770|ref|YP_006348009.1| - 0.031 14.6 0.6 0.076 13.4 0.6 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|389845770|ref|YP_006348009.1| - 0.031 14.3 0.1 0.053 13.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix KORA PF16509.5 gi|389845770|ref|YP_006348009.1| - 0.068 13.5 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_7 PF02796.15 gi|389845770|ref|YP_006348009.1| - 0.085 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|389845770|ref|YP_006348009.1| - 0.1 12.3 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TRAM PF01938.20 gi|389845771|ref|YP_006348010.1| - 2e-10 40.5 0.7 2.7e-10 40.1 0.7 1.2 1 0 0 1 1 1 1 TRAM domain Holin_9 PF16936.5 gi|389845772|ref|YP_006348011.1| - 4.3 7.6 7.5 2.9 8.1 0.8 2.4 2 0 0 2 2 2 0 Putative holin Radical_SAM PF04055.21 gi|662859304|ref|YP_006348012.2| - 9.3e-05 22.9 0.4 0.00073 20.0 0.3 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|662859304|ref|YP_006348012.2| - 0.00034 20.7 0.1 0.00058 20.0 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_S9 PF00326.21 gi|389845774|ref|YP_006348013.1| - 3.7e-44 150.8 0.5 5.2e-44 150.3 0.5 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|389845774|ref|YP_006348013.1| - 9.6e-07 28.6 0.5 0.0066 16.1 0.9 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|389845774|ref|YP_006348013.1| - 3.1e-05 23.4 0.1 0.021 14.1 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S28 PF05577.12 gi|389845774|ref|YP_006348013.1| - 5.8e-05 22.1 0.1 8.8e-05 21.5 0.1 1.1 1 0 0 1 1 1 1 Serine carboxypeptidase S28 DPPIV_N PF00930.21 gi|389845774|ref|YP_006348013.1| - 0.00087 18.1 0.0 0.3 9.8 0.0 3.0 2 1 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region LIP PF03583.14 gi|389845774|ref|YP_006348013.1| - 0.0031 16.9 0.1 1.9 7.7 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase DLH PF01738.18 gi|389845774|ref|YP_006348013.1| - 0.0069 16.0 0.0 0.016 14.8 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|389845774|ref|YP_006348013.1| - 0.0092 15.6 0.2 1 8.9 0.4 2.2 1 1 0 2 2 2 1 alpha/beta hydrolase fold PD40 PF07676.12 gi|389845774|ref|YP_006348013.1| - 0.039 13.9 0.5 18 5.4 0.0 4.0 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat mRNA_cap_enzyme PF01331.19 gi|389845774|ref|YP_006348013.1| - 0.039 13.8 0.0 0.066 13.0 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain Pectate_lyase22 PF14583.6 gi|389845774|ref|YP_006348013.1| - 0.048 12.3 0.1 0.36 9.4 0.0 1.9 1 1 1 2 2 2 0 Oligogalacturonate lyase Kelch_4 PF13418.6 gi|389845774|ref|YP_006348013.1| - 0.061 13.3 0.3 11 6.1 0.1 3.0 3 0 0 3 3 3 0 Galactose oxidase, central domain Esterase PF00756.20 gi|389845774|ref|YP_006348013.1| - 0.094 12.3 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 Putative esterase AXE1 PF05448.12 gi|389845774|ref|YP_006348013.1| - 0.13 10.9 0.1 0.37 9.4 0.0 1.7 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DUF2920 PF11144.8 gi|389845774|ref|YP_006348013.1| - 0.21 10.7 0.0 0.38 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) DUF373 PF04123.13 gi|389845775|ref|YP_006348014.1| - 5.7e-119 397.5 5.9 6.8e-119 397.2 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) polyprenyl_synt PF00348.17 gi|389845776|ref|YP_006348015.1| - 1.5e-54 184.8 0.0 1.8e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase PHP_C PF13263.6 gi|389845776|ref|YP_006348015.1| - 7.2 6.4 9.4 0.99 9.2 1.8 2.6 2 0 0 2 2 2 0 PHP-associated ETF_alpha PF00766.19 gi|389845777|ref|YP_006348016.1| - 1.6e-36 124.2 0.2 3.5e-36 123.1 0.2 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|389845777|ref|YP_006348016.1| - 4.8e-32 111.3 0.6 7.8e-32 110.6 0.6 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|389845778|ref|YP_006348017.1| - 3.6e-39 134.5 2.4 4.7e-39 134.2 2.4 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain HTH_IclR PF09339.10 gi|389845779|ref|YP_006348018.1| - 0.00051 19.8 0.1 0.0022 17.8 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389845779|ref|YP_006348018.1| - 0.066 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389845779|ref|YP_006348018.1| - 0.086 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|389845779|ref|YP_006348018.1| - 0.17 11.8 0.1 0.4 10.6 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mod_r PF07200.13 gi|662859305|ref|YP_006348019.2| - 0.011 15.8 0.3 0.017 15.2 0.3 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Laminin_G_2 PF02210.24 gi|662859305|ref|YP_006348019.2| - 0.069 13.7 0.0 0.16 12.6 0.0 1.6 1 1 0 1 1 1 0 Laminin G domain Pilin_N PF07790.11 gi|389845781|ref|YP_006348020.1| - 5.5e-09 36.8 1.3 8.8e-09 36.2 1.3 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Methyltransf_11 PF08241.12 gi|662859306|ref|YP_006348021.2| - 5.7e-24 84.6 0.0 8.6e-24 84.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|662859306|ref|YP_006348021.2| - 1.2e-21 77.2 0.0 2.1e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|662859306|ref|YP_006348021.2| - 1.6e-17 63.6 0.0 3.3e-14 52.8 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|662859306|ref|YP_006348021.2| - 3.9e-16 59.2 0.0 5e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|662859306|ref|YP_006348021.2| - 2e-13 50.5 0.0 4.4e-13 49.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|662859306|ref|YP_006348021.2| - 3.6e-13 50.1 0.0 5.5e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|662859306|ref|YP_006348021.2| - 2.1e-06 27.3 0.0 2.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|662859306|ref|YP_006348021.2| - 6e-06 26.2 0.0 9.9e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|662859306|ref|YP_006348021.2| - 1.2e-05 24.5 0.0 1.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|662859306|ref|YP_006348021.2| - 2.1e-05 24.2 0.0 2.9e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|662859306|ref|YP_006348021.2| - 0.0013 17.7 0.0 0.0019 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|662859306|ref|YP_006348021.2| - 0.009 15.6 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|662859306|ref|YP_006348021.2| - 0.011 14.4 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|662859306|ref|YP_006348021.2| - 0.016 14.8 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Cons_hypoth95 PF03602.15 gi|662859306|ref|YP_006348021.2| - 0.033 13.8 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_2 PF00891.18 gi|662859306|ref|YP_006348021.2| - 0.039 13.3 0.0 0.066 12.5 0.0 1.4 1 1 0 1 1 1 0 O-methyltransferase domain Methyltransf_15 PF09445.10 gi|662859306|ref|YP_006348021.2| - 0.1 12.1 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_PK PF05891.12 gi|662859306|ref|YP_006348021.2| - 0.11 12.0 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_8 PF05148.15 gi|662859306|ref|YP_006348021.2| - 0.16 11.8 0.0 0.51 10.1 0.0 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase V-ATPase_G_2 PF16999.5 gi|389845783|ref|YP_006348022.1| - 1.8e-07 31.5 26.2 3.5e-07 30.6 26.2 1.4 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|389845783|ref|YP_006348022.1| - 0.0015 18.7 26.0 0.0057 16.7 24.1 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DivIVA PF05103.13 gi|389845783|ref|YP_006348022.1| - 0.0037 17.3 16.1 0.0071 16.4 9.3 2.1 1 1 1 2 2 2 1 DivIVA protein Ish1 PF10281.9 gi|389845783|ref|YP_006348022.1| - 0.012 15.8 0.4 1.4 9.3 0.1 2.4 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein HrpE PF06188.12 gi|389845783|ref|YP_006348022.1| - 0.018 14.9 7.9 0.027 14.4 7.9 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF885 PF05960.11 gi|389845783|ref|YP_006348022.1| - 0.02 14.6 9.1 0.021 14.5 9.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) YtxH PF12732.7 gi|389845783|ref|YP_006348022.1| - 0.04 14.5 10.0 3 8.5 5.9 2.3 2 0 0 2 2 2 0 YtxH-like protein DUF3552 PF12072.8 gi|389845783|ref|YP_006348022.1| - 0.087 12.2 23.6 0.026 13.9 13.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) ApoLp-III PF07464.11 gi|389845783|ref|YP_006348022.1| - 0.088 12.9 7.3 0.12 12.4 7.3 1.2 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) OmpH PF03938.14 gi|389845783|ref|YP_006348022.1| - 0.11 12.9 13.2 0.13 12.6 13.2 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF883 PF05957.13 gi|389845783|ref|YP_006348022.1| - 0.15 12.7 14.8 0.26 11.9 5.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) V-ATPase_G PF03179.15 gi|389845783|ref|YP_006348022.1| - 0.25 11.9 20.6 1.1 9.8 20.6 1.9 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit vATP-synt_E PF01991.18 gi|389845783|ref|YP_006348022.1| - 0.31 10.4 19.9 0.15 11.4 18.2 1.4 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit DUF2240 PF09999.9 gi|389845783|ref|YP_006348022.1| - 0.31 10.7 6.9 0.18 11.4 2.0 2.0 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) PRKCSH-like PF12999.7 gi|389845783|ref|YP_006348022.1| - 0.42 10.4 7.1 0.97 9.2 3.1 2.0 1 1 1 2 2 2 0 Glucosidase II beta subunit-like Merozoite_SPAM PF07133.11 gi|389845783|ref|YP_006348022.1| - 0.47 10.4 25.9 0.69 9.9 25.9 1.3 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) Spc7 PF08317.11 gi|389845783|ref|YP_006348022.1| - 0.87 8.4 13.8 1 8.2 13.8 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF615 PF04751.14 gi|389845783|ref|YP_006348022.1| - 1.3 9.0 11.8 5.6 6.9 5.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF615) DUF3435 PF11917.8 gi|389845783|ref|YP_006348022.1| - 3 6.7 7.3 3.4 6.5 7.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Caudo_TAP PF02413.17 gi|389845783|ref|YP_006348022.1| - 3.7 7.7 11.4 7.8 6.6 7.2 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK Clathrin_lg_ch PF01086.17 gi|389845783|ref|YP_006348022.1| - 4.4 7.3 19.7 1.1e+02 2.7 18.7 2.0 1 1 0 1 1 1 0 Clathrin light chain DUF4192 PF13830.6 gi|389845783|ref|YP_006348022.1| - 5.1 7.1 11.3 5.7 6.9 11.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) V_ATPase_I PF01496.19 gi|389845784|ref|YP_006348023.1| - 1.9e-19 69.2 9.8 9.3e-12 43.7 0.8 3.6 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family Spc24 PF08286.11 gi|389845784|ref|YP_006348023.1| - 0.0087 16.3 0.9 5.2 7.4 0.0 2.4 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 APG6_N PF17675.1 gi|389845784|ref|YP_006348023.1| - 0.011 16.2 6.1 0.17 12.4 1.2 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region TMF_DNA_bd PF12329.8 gi|389845784|ref|YP_006348023.1| - 0.015 15.3 1.5 2.7 8.1 0.0 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Tektin PF03148.14 gi|389845784|ref|YP_006348023.1| - 0.02 13.7 1.0 3 6.5 0.0 2.1 2 0 0 2 2 2 0 Tektin family Prefoldin_2 PF01920.20 gi|389845784|ref|YP_006348023.1| - 0.022 14.7 1.3 6.6 6.8 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|389845784|ref|YP_006348023.1| - 0.027 14.5 3.5 3.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5320 PF17253.2 gi|389845784|ref|YP_006348023.1| - 0.046 14.8 0.3 0.69 11.0 0.0 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5320) XhlA PF10779.9 gi|389845784|ref|YP_006348023.1| - 0.058 13.6 4.5 2.2 8.5 0.4 2.7 2 0 0 2 2 2 0 Haemolysin XhlA Ax_dynein_light PF10211.9 gi|389845784|ref|YP_006348023.1| - 0.069 13.1 2.1 0.71 9.8 0.3 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain BBS2_C PF14782.6 gi|389845784|ref|YP_006348023.1| - 0.085 11.6 0.0 0.42 9.3 0.0 1.8 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal DUF4140 PF13600.6 gi|389845784|ref|YP_006348023.1| - 0.086 13.3 3.9 1.9 9.0 0.5 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.11 gi|389845784|ref|YP_006348023.1| - 0.15 12.6 0.7 18 6.0 0.0 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Ntox28 PF15605.6 gi|389845784|ref|YP_006348023.1| - 0.16 12.2 0.1 1.2 9.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial toxin 28 Seryl_tRNA_N PF02403.22 gi|389845784|ref|YP_006348023.1| - 0.18 12.1 2.2 4 7.7 0.2 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.11 gi|389845784|ref|YP_006348023.1| - 0.2 12.1 4.3 7.7 7.0 1.3 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|389845784|ref|YP_006348023.1| - 0.24 11.5 0.9 11 6.0 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Tropomyosin_1 PF12718.7 gi|389845784|ref|YP_006348023.1| - 0.43 10.7 4.6 2.3 8.4 0.6 2.2 2 0 0 2 2 2 0 Tropomyosin like CCDC-167 PF15188.6 gi|389845784|ref|YP_006348023.1| - 0.96 9.8 5.0 1.3 9.4 0.3 2.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Troponin PF00992.20 gi|389845784|ref|YP_006348023.1| - 1.7 8.9 3.5 2.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Troponin Rho_Binding PF08912.11 gi|389845784|ref|YP_006348023.1| - 2.4 9.0 4.9 32 5.4 1.1 2.3 2 0 0 2 2 2 0 Rho Binding ATP-synt_C PF00137.21 gi|389845785|ref|YP_006348024.1| - 6.8e-11 42.4 11.3 8.7e-11 42.0 11.3 1.2 1 0 0 1 1 1 1 ATP synthase subunit C Arm PF00514.23 gi|389845785|ref|YP_006348024.1| - 0.069 13.2 0.1 0.1 12.7 0.1 1.3 1 0 0 1 1 1 0 Armadillo/beta-catenin-like repeat vATP-synt_E PF01991.18 gi|389845786|ref|YP_006348025.1| - 9e-50 168.9 11.6 1e-49 168.7 11.6 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|389845786|ref|YP_006348025.1| - 0.0015 18.6 16.8 0.0015 18.6 16.8 2.1 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) DEK_C PF08766.11 gi|389845786|ref|YP_006348025.1| - 0.13 12.2 3.0 2.5 8.1 0.3 2.7 2 0 0 2 2 2 0 DEK C terminal domain YtxH PF12732.7 gi|389845786|ref|YP_006348025.1| - 2.1 8.9 7.4 25 5.5 6.2 2.5 2 1 0 2 2 2 0 YtxH-like protein DivIVA PF05103.13 gi|389845786|ref|YP_006348025.1| - 5.8 7.0 14.0 49 4.0 14.0 2.2 1 1 0 1 1 1 0 DivIVA protein HrpE PF06188.12 gi|389845786|ref|YP_006348025.1| - 8.6 6.2 13.8 26 4.6 13.8 1.7 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E vATP-synt_AC39 PF01992.16 gi|389845787|ref|YP_006348026.1| - 1.5e-79 267.9 1.1 1.7e-79 267.8 1.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|389845788|ref|YP_006348027.1| - 1.1e-16 60.9 0.1 1.2e-16 60.8 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|389845789|ref|YP_006348028.1| - 1.4e-92 309.2 0.0 1.9e-92 308.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|389845789|ref|YP_006348028.1| - 1.5e-39 134.6 0.0 2.7e-39 133.8 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|389845789|ref|YP_006348028.1| - 2.7e-12 47.0 3.7 2.7e-12 47.0 3.7 2.7 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|389845789|ref|YP_006348028.1| - 0.028 14.7 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain QRPTase_N PF02749.16 gi|389845789|ref|YP_006348028.1| - 0.07 13.2 0.4 13 6.0 0.0 3.1 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_M23 PF01551.22 gi|389845789|ref|YP_006348028.1| - 0.079 13.2 0.7 7.5 6.8 0.0 2.9 3 0 0 3 3 3 0 Peptidase family M23 RnfC_N PF13375.6 gi|389845789|ref|YP_006348028.1| - 0.15 12.0 2.1 15 5.6 0.1 3.1 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab PF00006.25 gi|389845790|ref|YP_006348029.1| - 4.1e-65 219.4 0.0 5.5e-65 219.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|389845790|ref|YP_006348029.1| - 1.1e-14 54.7 1.0 2.5e-14 53.5 1.0 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|389845790|ref|YP_006348029.1| - 0.0034 17.5 0.6 0.014 15.5 0.6 2.2 1 0 0 1 1 1 1 HAS barrel domain BAT PF15915.5 gi|389845791|ref|YP_006348030.1| - 4.7e-31 107.8 3.5 4.7e-31 107.8 3.5 3.5 4 1 1 5 5 5 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|389845791|ref|YP_006348030.1| - 1.2e-19 70.5 0.0 2.4e-19 69.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain HTH_10 PF04967.12 gi|389845791|ref|YP_006348030.1| - 1.6e-19 69.4 0.0 3.2e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|389845791|ref|YP_006348030.1| - 7.8e-11 42.2 2.4 2.9e-09 37.2 0.1 3.4 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.6 gi|389845791|ref|YP_006348030.1| - 1.2e-10 41.9 0.8 2.8e-10 40.7 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|389845791|ref|YP_006348030.1| - 4.3e-10 39.6 0.0 1.5e-09 37.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|389845791|ref|YP_006348030.1| - 1.8e-05 25.0 0.0 3.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|389845791|ref|YP_006348030.1| - 3e-05 23.9 0.0 0.00016 21.6 0.0 2.3 2 0 0 2 2 2 1 PAS domain Sigma70_r4 PF04545.16 gi|389845791|ref|YP_006348030.1| - 6.1e-05 22.5 0.4 0.00051 19.5 0.0 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 GAF_3 PF13492.6 gi|389845791|ref|YP_006348030.1| - 0.00034 21.0 0.0 0.0017 18.7 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|389845791|ref|YP_006348030.1| - 0.0072 17.0 0.1 0.017 15.8 0.1 1.7 1 0 0 1 1 1 1 GAF domain HTH_11 PF08279.12 gi|389845791|ref|YP_006348030.1| - 0.0082 16.1 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|389845791|ref|YP_006348030.1| - 0.01 15.5 0.1 0.3 10.8 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|389845791|ref|YP_006348030.1| - 0.026 14.6 1.9 1 9.4 0.1 3.2 2 1 0 2 2 2 0 Helix-turn-helix domain PP2C_2 PF13672.6 gi|389845791|ref|YP_006348030.1| - 0.035 13.7 1.1 0.14 11.8 1.1 1.9 1 0 0 1 1 1 0 Protein phosphatase 2C DUF1492 PF07374.11 gi|389845791|ref|YP_006348030.1| - 0.1 12.8 0.1 0.36 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) ATP-synt_D PF01813.17 gi|389845792|ref|YP_006348031.1| - 3.6e-55 186.8 11.2 5e-55 186.4 11.2 1.2 1 0 0 1 1 1 1 ATP synthase subunit D TFIIS_C PF01096.18 gi|389845793|ref|YP_006348032.1| - 0.17 11.8 0.2 0.86 9.5 0.0 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) eRF1_2 PF03464.15 gi|662859307|ref|YP_006348033.2| - 1.2e-41 142.1 0.0 2.9e-41 140.9 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|662859307|ref|YP_006348033.2| - 5.1e-26 91.4 0.6 1.1e-25 90.4 0.2 1.8 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|662859307|ref|YP_006348033.2| - 4.5e-18 65.8 0.1 1.4e-17 64.2 0.1 1.8 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|662859307|ref|YP_006348033.2| - 1.8e-14 54.2 0.0 5.5e-14 52.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|662859307|ref|YP_006348033.2| - 1.3e-09 38.1 0.0 2e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family12 PF18856.1 gi|662859307|ref|YP_006348033.2| - 0.0021 18.6 0.0 0.006 17.2 0.0 1.8 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 CbiA PF01656.23 gi|389845795|ref|YP_006348034.1| - 5.7e-18 65.2 0.2 1.2e-17 64.2 0.2 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|389845795|ref|YP_006348034.1| - 1.9e-17 63.7 0.0 3e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|389845795|ref|YP_006348034.1| - 2.5e-15 56.6 6.0 7.8e-14 51.7 6.0 2.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|389845795|ref|YP_006348034.1| - 2.7e-08 33.6 0.2 7.2e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|389845795|ref|YP_006348034.1| - 5e-08 32.7 0.1 0.0048 16.4 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|389845795|ref|YP_006348034.1| - 2.1e-05 23.8 0.8 0.00021 20.6 1.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|389845795|ref|YP_006348034.1| - 0.0016 17.8 2.7 0.02 14.2 2.7 2.1 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|389845795|ref|YP_006348034.1| - 0.0082 16.0 0.3 0.0082 16.0 0.3 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|389845795|ref|YP_006348034.1| - 0.0086 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|389845795|ref|YP_006348034.1| - 0.026 14.3 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|389845795|ref|YP_006348034.1| - 0.036 13.4 0.5 0.094 12.0 0.2 1.8 2 0 0 2 2 2 0 VirC1 protein SRP54 PF00448.22 gi|389845795|ref|YP_006348034.1| - 0.13 11.9 4.5 0.55 9.8 0.8 2.6 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain tRNA-synt_1d PF00750.19 gi|389845796|ref|YP_006348035.1| - 6.2e-38 130.6 0.0 8.4e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|389845796|ref|YP_006348035.1| - 2.4e-35 121.3 0.0 8e-35 119.6 0.0 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|389845796|ref|YP_006348035.1| - 4.1e-09 36.9 0.0 1.8e-08 34.8 0.0 2.2 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|389845796|ref|YP_006348035.1| - 0.022 13.7 0.0 0.38 9.6 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-ribbon_3 PF13248.6 gi|662859308|ref|YP_006348036.2| - 0.0034 16.7 0.8 0.56 9.7 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain C1_1 PF00130.22 gi|662859308|ref|YP_006348036.2| - 0.0082 16.0 0.4 0.01 15.7 0.4 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF3268 PF11672.8 gi|662859308|ref|YP_006348036.2| - 0.037 14.3 1.0 0.079 13.3 1.0 1.5 1 1 0 1 1 1 0 zinc-finger-containing domain RNA_POL_M_15KD PF02150.16 gi|662859308|ref|YP_006348036.2| - 0.1 12.5 0.8 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_9 PF14369.6 gi|662859308|ref|YP_006348036.2| - 0.15 12.3 3.9 5.2 7.4 3.9 2.3 1 1 0 1 1 1 0 zinc-ribbon CTP-dep_RFKase PF01982.16 gi|389845798|ref|YP_006348037.1| - 2.7e-46 156.6 0.0 3.9e-46 156.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|389845798|ref|YP_006348037.1| - 1.9e-07 31.1 0.0 4.6e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389845798|ref|YP_006348037.1| - 9.8e-06 25.4 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|389845798|ref|YP_006348037.1| - 1.2e-05 25.1 0.2 2.7e-05 24.0 0.2 1.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|389845798|ref|YP_006348037.1| - 4.4e-05 23.0 0.0 9.3e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|389845798|ref|YP_006348037.1| - 0.0005 20.0 0.1 0.0012 18.8 0.0 1.6 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|389845798|ref|YP_006348037.1| - 0.0011 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|389845798|ref|YP_006348037.1| - 0.0048 17.1 0.0 0.0088 16.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|389845798|ref|YP_006348037.1| - 0.0092 15.7 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|389845798|ref|YP_006348037.1| - 0.01 15.6 1.3 0.014 15.2 0.2 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|389845798|ref|YP_006348037.1| - 0.041 13.8 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Peptidase_A4 PF01828.17 gi|389845798|ref|YP_006348037.1| - 0.047 13.2 0.0 0.2 11.1 0.0 1.9 1 1 0 1 1 1 0 Peptidase A4 family HTH_10 PF04967.12 gi|389845798|ref|YP_006348037.1| - 0.069 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.6 gi|389845798|ref|YP_006348037.1| - 0.077 13.5 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|389845798|ref|YP_006348037.1| - 0.079 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|389845798|ref|YP_006348037.1| - 0.091 12.6 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RNase_II_C_S1 PF18614.1 gi|389845798|ref|YP_006348037.1| - 0.12 12.4 0.6 1.1 9.2 0.0 2.9 3 0 0 3 3 3 0 RNase II-type exonuclease C-terminal S1 domain HTH_12 PF08461.10 gi|389845798|ref|YP_006348037.1| - 0.12 12.3 0.0 0.44 10.5 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_34 PF13601.6 gi|389845798|ref|YP_006348037.1| - 0.14 12.3 0.0 0.72 10.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain DHBP_synthase PF00926.19 gi|389845799|ref|YP_006348038.1| - 3.7e-54 183.2 0.0 4.3e-54 183.0 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Epimerase PF01370.21 gi|389845800|ref|YP_006348039.1| - 1.2e-19 70.8 0.0 1.5e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389845800|ref|YP_006348039.1| - 1.3e-14 54.4 0.8 6.1e-12 45.6 0.1 2.4 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|389845800|ref|YP_006348039.1| - 1.7e-06 27.4 0.0 3.1e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|389845800|ref|YP_006348039.1| - 3.1e-06 26.4 0.0 5.2e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 gi|389845800|ref|YP_006348039.1| - 2e-05 24.6 0.5 0.04 13.8 0.1 2.5 2 1 1 3 3 3 2 KR domain NAD_binding_4 PF07993.12 gi|389845800|ref|YP_006348039.1| - 3.7e-05 23.0 0.0 0.021 14.0 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|389845800|ref|YP_006348039.1| - 7.3e-05 22.7 0.4 0.00013 22.0 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|389845800|ref|YP_006348039.1| - 0.0008 19.0 0.1 0.0013 18.4 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family LpxI_N PF17930.1 gi|389845800|ref|YP_006348039.1| - 0.032 14.1 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 LpxI N-terminal domain Polysacc_synt_2 PF02719.15 gi|389845800|ref|YP_006348039.1| - 0.11 11.6 1.0 13 4.8 1.7 2.9 2 1 0 2 2 2 0 Polysaccharide biosynthesis protein Aminotran_4 PF01063.19 gi|389845801|ref|YP_006348040.1| - 8.9e-49 166.3 0.0 1.1e-48 166.1 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Nif11 PF07862.11 gi|389845801|ref|YP_006348040.1| - 0.037 14.3 0.0 0.086 13.2 0.0 1.6 1 0 0 1 1 1 0 Nif11 domain DUF502 PF04367.13 gi|389845802|ref|YP_006348041.1| - 6.2e-19 67.9 0.2 6.2e-19 67.9 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF502) DUF4013 PF13197.6 gi|389845802|ref|YP_006348041.1| - 0.021 14.7 7.5 0.03 14.2 7.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) BPD_transp_2 PF02653.16 gi|389845802|ref|YP_006348041.1| - 0.054 12.6 4.7 0.072 12.2 4.7 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component ABC2_membrane_3 PF12698.7 gi|389845802|ref|YP_006348041.1| - 0.81 8.7 8.4 1.3 8.0 8.4 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Pro_dh PF01619.18 gi|389845803|ref|YP_006348042.1| - 9.9e-29 100.8 0.0 1.8e-28 100.0 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase CarS-like PF01864.17 gi|389845804|ref|YP_006348043.1| - 2.7e-46 157.8 0.6 3.1e-46 157.5 0.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|389845804|ref|YP_006348043.1| - 0.00065 19.5 1.7 0.00065 19.5 1.7 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family CcmD PF04995.14 gi|389845804|ref|YP_006348043.1| - 0.37 10.9 0.0 0.37 10.9 0.0 2.9 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) Pribosyltran PF00156.27 gi|389845805|ref|YP_006348044.1| - 5.7e-12 45.4 2.7 7.9e-12 45.0 2.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389845805|ref|YP_006348044.1| - 5.7e-05 22.6 0.2 7.1e-05 22.3 0.2 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase YflT PF11181.8 gi|389845805|ref|YP_006348044.1| - 0.032 14.8 0.2 0.082 13.4 0.2 1.7 1 0 0 1 1 1 0 Heat induced stress protein YflT PRTase_2 PF15609.6 gi|389845805|ref|YP_006348044.1| - 0.048 13.1 0.2 0.079 12.5 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Pribosyltran PF00156.27 gi|389845806|ref|YP_006348045.1| - 1.8e-11 43.8 0.2 2.9e-11 43.1 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|389845806|ref|YP_006348045.1| - 0.0067 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Xan_ur_permease PF00860.20 gi|389845807|ref|YP_006348046.1| - 5.2e-38 130.8 46.4 5.2e-38 130.8 46.4 1.7 2 1 0 2 2 2 1 Permease family DUF5464 PF17552.2 gi|389845807|ref|YP_006348046.1| - 0.047 14.0 11.7 1.4 9.3 2.2 4.3 3 0 0 3 3 3 0 Family of unknown function (DUF5464) Arylsulfotrans PF05935.11 gi|389845808|ref|YP_006348047.1| - 1.2e-12 47.4 4.1 2.7e-11 43.0 2.2 2.3 1 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|389845808|ref|YP_006348047.1| - 4.8e-07 29.5 1.2 7.4e-05 22.3 0.8 3.2 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) PQQ_2 PF13360.6 gi|389845808|ref|YP_006348047.1| - 9.5e-06 25.4 5.1 0.0021 17.7 0.2 2.6 1 1 0 2 2 2 2 PQQ-like domain NHL PF01436.21 gi|389845808|ref|YP_006348047.1| - 0.0051 16.8 2.0 5 7.3 0.0 3.5 3 0 0 3 3 3 2 NHL repeat PQQ PF01011.21 gi|389845808|ref|YP_006348047.1| - 0.028 14.4 1.6 5.3 7.1 0.3 3.2 2 0 0 2 2 2 0 PQQ enzyme repeat GST_N_3 PF13417.6 gi|389845809|ref|YP_006348048.1| - 1.4e-13 51.0 0.0 1.5e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|389845809|ref|YP_006348048.1| - 1.2e-10 41.4 0.0 1.9e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|389845809|ref|YP_006348048.1| - 3e-09 37.0 0.0 3.5e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|389845809|ref|YP_006348048.1| - 0.0011 19.4 0.2 0.0013 19.1 0.2 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|389845809|ref|YP_006348048.1| - 0.028 14.7 0.0 0.051 13.9 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|389845809|ref|YP_006348048.1| - 0.07 13.6 0.0 0.083 13.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain HTH_3 PF01381.22 gi|662859309|ref|YP_006348049.2| - 7.8e-13 48.3 0.0 1.4e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|662859309|ref|YP_006348049.2| - 9.1e-07 28.8 0.1 1.6e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|662859309|ref|YP_006348049.2| - 1.1e-06 28.9 0.1 2.6e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|662859309|ref|YP_006348049.2| - 8.5e-05 22.3 0.1 0.00017 21.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|662859309|ref|YP_006348049.2| - 0.00014 21.6 0.3 0.00033 20.4 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|662859309|ref|YP_006348049.2| - 0.00018 21.4 0.0 0.00048 20.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|662859309|ref|YP_006348049.2| - 0.0043 16.5 0.1 0.0093 15.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|662859309|ref|YP_006348049.2| - 0.03 14.1 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|662859309|ref|YP_006348049.2| - 0.031 14.1 0.0 0.09 12.7 0.0 1.7 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|662859309|ref|YP_006348049.2| - 0.096 12.5 0.1 0.21 11.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|662859309|ref|YP_006348049.2| - 0.12 12.5 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1743 PF08489.11 gi|389845811|ref|YP_006348050.1| - 8e-39 132.3 0.0 1.5e-38 131.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti_2 PF13742.6 gi|389845811|ref|YP_006348050.1| - 0.00029 21.0 0.0 0.00049 20.2 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|389845811|ref|YP_006348050.1| - 0.00044 20.2 0.0 0.001 19.0 0.0 1.6 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain IBR PF01485.21 gi|389845811|ref|YP_006348050.1| - 0.0011 19.2 0.3 0.0019 18.4 0.3 1.4 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|389845811|ref|YP_006348050.1| - 0.027 14.4 0.9 0.054 13.4 0.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|389845811|ref|YP_006348050.1| - 0.048 13.6 0.2 0.086 12.7 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|389845811|ref|YP_006348050.1| - 0.051 13.6 0.2 0.093 12.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|389845811|ref|YP_006348050.1| - 0.18 11.9 3.9 5.9 7.1 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|389845811|ref|YP_006348050.1| - 0.19 11.7 2.2 0.41 10.7 2.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|389845811|ref|YP_006348050.1| - 0.2 11.7 0.8 0.36 10.8 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbons Big_1 PF02369.16 gi|389845812|ref|YP_006348051.1| - 0.00013 21.9 2.7 0.00033 20.6 2.7 1.6 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|389845812|ref|YP_006348051.1| - 0.00041 20.6 1.6 0.00088 19.5 1.6 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 gi|389845812|ref|YP_006348051.1| - 0.00063 20.0 0.4 0.00098 19.4 0.4 1.4 1 0 0 1 1 1 1 Invasin, domain 3 MG4 PF17789.1 gi|389845812|ref|YP_006348051.1| - 0.011 15.9 0.4 0.022 14.9 0.2 1.6 2 0 0 2 2 2 0 Macroglobulin domain MG4 YtkA PF13115.6 gi|389845812|ref|YP_006348051.1| - 0.036 14.7 0.7 0.082 13.5 0.6 1.6 1 1 0 1 1 1 0 YtkA-like DUF853 PF05872.12 gi|389845813|ref|YP_006348052.1| - 4.6e-07 28.8 0.1 0.0092 14.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|389845813|ref|YP_006348052.1| - 1.1e-05 25.7 0.0 2.6e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|389845813|ref|YP_006348052.1| - 0.0062 15.9 0.4 0.34 10.2 0.1 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|389845813|ref|YP_006348052.1| - 0.0076 15.5 0.2 0.025 13.9 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin Helicase_RecD PF05127.14 gi|389845813|ref|YP_006348052.1| - 0.033 14.0 0.3 0.1 12.4 0.1 1.8 2 0 0 2 2 2 0 Helicase AAA_30 PF13604.6 gi|389845813|ref|YP_006348052.1| - 0.036 13.8 0.3 0.096 12.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|389845813|ref|YP_006348052.1| - 0.066 13.5 0.0 0.95 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|389845813|ref|YP_006348052.1| - 0.068 13.7 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 gi|389845813|ref|YP_006348052.1| - 0.083 13.3 0.1 1.1 9.7 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|389845813|ref|YP_006348052.1| - 0.1 12.9 1.9 0.4 11.1 0.1 2.3 2 1 1 3 3 3 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|389845813|ref|YP_006348052.1| - 0.14 11.0 0.0 4.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CRCB PF02537.15 gi|389845814|ref|YP_006348053.1| - 7.9e-17 61.4 16.8 9.7e-17 61.1 16.8 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF5326 PF17260.2 gi|389845814|ref|YP_006348053.1| - 0.38 10.9 4.1 9.7 6.4 0.2 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5326) SpecificRecomb PF10136.9 gi|389845814|ref|YP_006348053.1| - 1.2 7.4 6.1 0.36 9.1 3.3 1.5 1 1 1 2 2 2 0 Site-specific recombinase CRCB PF02537.15 gi|389845815|ref|YP_006348054.1| - 2.8e-20 72.4 11.2 3.6e-20 72.1 11.2 1.2 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) RNA_pol_Rpb5_C PF01191.19 gi|389845817|ref|YP_006348056.1| - 1.6e-26 91.9 0.7 1.8e-26 91.8 0.7 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|389845817|ref|YP_006348056.1| - 0.055 13.7 0.3 0.76 10.1 0.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) RNA_pol_Rpb2_1 PF04563.15 gi|389845818|ref|YP_006348057.1| - 1.8e-49 168.0 0.1 2.2e-49 167.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|389845818|ref|YP_006348057.1| - 1.9e-27 96.1 0.1 2.8e-27 95.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|389845818|ref|YP_006348057.1| - 9.9e-25 86.5 0.0 2e-24 85.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|389845819|ref|YP_006348058.1| - 2.1e-128 428.7 0.0 3.5e-128 428.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|389845819|ref|YP_006348058.1| - 1e-24 86.7 0.0 1.7e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|389845819|ref|YP_006348058.1| - 1.4e-22 79.8 0.9 6.6e-22 77.6 0.5 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|389845819|ref|YP_006348058.1| - 3.3e-09 37.2 5.8 1e-08 35.6 5.8 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|389845820|ref|YP_006348059.1| - 2e-107 359.1 0.0 2.9e-107 358.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|389845820|ref|YP_006348059.1| - 2.9e-69 232.6 0.4 4.5e-69 231.9 0.4 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|389845820|ref|YP_006348059.1| - 2.8e-30 104.5 0.0 5.6e-30 103.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|389845820|ref|YP_006348059.1| - 2.2e-28 99.2 0.0 3.8e-28 98.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|389845820|ref|YP_006348059.1| - 2.6e-26 92.7 0.0 4.8e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|389845820|ref|YP_006348059.1| - 0.11 12.7 1.7 3.3 8.0 0.1 2.8 2 0 0 2 2 2 0 C4-type zinc ribbon domain HypA PF01155.19 gi|389845820|ref|YP_006348059.1| - 0.48 10.5 2.7 3.7 7.6 2.7 2.2 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|389845820|ref|YP_006348059.1| - 1.3 9.2 3.0 6.2 7.0 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain RNA_pol_Rpb1_5 PF04998.17 gi|389845821|ref|YP_006348060.1| - 1.6e-54 185.2 0.3 2e-54 184.8 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|389845821|ref|YP_006348060.1| - 0.1 12.6 0.1 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain KH_2 PF07650.17 gi|389845823|ref|YP_006348062.1| - 5.2e-13 48.6 0.0 1.6e-06 27.8 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|389845823|ref|YP_006348062.1| - 6.8e-11 42.1 0.0 3.2e-10 39.9 0.0 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|389845823|ref|YP_006348062.1| - 2.2e-06 27.4 0.0 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|389845823|ref|YP_006348062.1| - 0.03 14.1 0.1 0.63 9.9 0.0 2.2 1 1 1 2 2 2 0 KH domain YadA_head PF05658.14 gi|389845823|ref|YP_006348062.1| - 0.15 12.5 3.3 3.4 8.2 0.1 2.5 2 0 0 2 2 2 0 Head domain of trimeric autotransporter adhesin Ribosom_S12_S23 PF00164.25 gi|389845825|ref|YP_006348064.1| - 4.2e-50 168.2 0.5 5.3e-50 167.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|389845826|ref|YP_006348065.1| - 1.2e-36 125.6 3.6 1.4e-36 125.3 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Tsi6 PF18660.1 gi|389845826|ref|YP_006348065.1| - 0.0095 16.0 0.0 56 3.9 0.0 3.5 2 1 1 3 3 3 0 Tsi6 PBECR3 PF18812.1 gi|389845826|ref|YP_006348065.1| - 0.053 13.5 0.2 0.093 12.7 0.2 1.4 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 DUF2420 PF10336.9 gi|389845826|ref|YP_006348065.1| - 0.063 13.3 0.0 0.092 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) DR2241 PF18069.1 gi|389845827|ref|YP_006348066.1| - 0.067 13.1 0.2 0.26 11.1 0.1 2.0 2 0 0 2 2 2 0 DR2241 stabilising domain RNA_pol_A_bac PF01000.26 gi|389845827|ref|YP_006348066.1| - 0.17 12.3 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain GTP_EFTU PF00009.27 gi|662859310|ref|YP_006348067.2| - 3.4e-65 219.2 0.3 5.5e-65 218.6 0.3 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|662859310|ref|YP_006348067.2| - 2.7e-24 85.0 0.0 1.3e-23 82.8 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|662859310|ref|YP_006348067.2| - 2.1e-22 79.2 0.0 6.1e-22 77.7 0.0 1.8 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|662859310|ref|YP_006348067.2| - 1.4e-21 76.4 0.3 1.4e-21 76.4 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|662859310|ref|YP_006348067.2| - 5.1e-15 55.6 2.0 2.3e-14 53.5 0.7 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|662859310|ref|YP_006348067.2| - 2.5e-05 24.4 0.5 0.00019 21.5 0.1 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|662859310|ref|YP_006348067.2| - 0.071 12.5 0.1 0.24 10.8 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|662859310|ref|YP_006348067.2| - 0.17 11.5 0.0 0.38 10.3 0.0 1.6 1 0 0 1 1 1 0 Ras family ACT PF01842.25 gi|389845829|ref|YP_006348068.1| - 2.3e-05 24.1 0.1 0.0018 18.0 0.0 2.7 3 0 0 3 3 3 2 ACT domain Homoserine_dh PF00742.19 gi|389845830|ref|YP_006348069.1| - 1.8e-47 161.5 0.2 2.6e-47 161.0 0.2 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|389845830|ref|YP_006348069.1| - 3e-06 27.2 0.0 6.2e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|389845830|ref|YP_006348069.1| - 8.7e-06 26.4 0.0 2e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|389845830|ref|YP_006348069.1| - 0.065 13.9 0.0 0.19 12.4 0.0 1.8 1 0 0 1 1 1 0 PglD N-terminal domain 2-Hacid_dh_C PF02826.19 gi|389845830|ref|YP_006348069.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|389845830|ref|YP_006348069.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GTP_EFTU PF00009.27 gi|389845831|ref|YP_006348070.1| - 1e-55 188.3 0.0 1.2e-55 188.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|389845831|ref|YP_006348070.1| - 7.4e-38 129.3 0.1 1.7e-37 128.1 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|389845831|ref|YP_006348070.1| - 2.6e-17 63.0 3.1 2.8e-16 59.7 1.0 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|389845831|ref|YP_006348070.1| - 2.4e-06 27.6 0.2 2.4e-05 24.4 0.2 2.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|389845831|ref|YP_006348070.1| - 0.00075 19.4 0.1 0.035 14.0 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|389845831|ref|YP_006348070.1| - 0.0011 18.4 0.1 0.061 12.7 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.6 gi|389845831|ref|YP_006348070.1| - 0.008 16.1 0.5 0.022 14.7 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|389845831|ref|YP_006348070.1| - 0.015 14.8 0.0 0.51 9.7 0.0 2.3 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|389845831|ref|YP_006348070.1| - 0.023 14.0 0.0 0.065 12.5 0.0 1.7 1 1 0 1 1 1 0 Septin PduV-EutP PF10662.9 gi|389845831|ref|YP_006348070.1| - 0.11 12.3 0.2 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|389845831|ref|YP_006348070.1| - 0.12 11.9 0.3 2.7 7.5 0.2 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|389845831|ref|YP_006348070.1| - 0.14 12.2 0.0 12 6.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.22 gi|389845832|ref|YP_006348071.1| - 2.4e-25 88.6 0.0 2.6e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e WD40_3 PF15911.5 gi|389845833|ref|YP_006348072.1| - 0.033 14.2 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 WD domain, G-beta repeat PAS_4 PF08448.10 gi|389845834|ref|YP_006348073.1| - 7e-32 109.9 2.0 7.5e-18 64.8 0.1 2.4 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|389845834|ref|YP_006348073.1| - 1.2e-22 80.2 0.1 1.1e-21 77.1 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain PAS_9 PF13426.7 gi|389845834|ref|YP_006348073.1| - 4.6e-19 68.6 1.2 1.5e-09 38.0 0.1 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|389845834|ref|YP_006348073.1| - 7.6e-15 54.9 0.5 1.7e-07 31.2 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|389845834|ref|YP_006348073.1| - 2.1e-10 40.4 0.9 3.8e-05 23.6 0.3 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|389845834|ref|YP_006348073.1| - 1.6e-08 35.0 0.5 5e-08 33.3 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|389845834|ref|YP_006348073.1| - 8.8e-08 32.3 5.1 0.0029 17.8 0.2 4.2 2 2 1 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|389845834|ref|YP_006348073.1| - 1.6e-06 28.3 0.0 0.022 15.1 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_10 PF13596.6 gi|389845834|ref|YP_006348073.1| - 2.7e-05 24.7 0.1 0.39 11.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|389845834|ref|YP_006348073.1| - 3.4e-05 24.5 0.1 0.00019 22.1 0.0 2.3 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.15 gi|389845834|ref|YP_006348073.1| - 3.9e-05 23.9 0.0 0.00013 22.2 0.0 1.9 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF_3 PF13492.6 gi|389845834|ref|YP_006348073.1| - 0.063 13.6 0.1 0.27 11.6 0.0 2.0 2 0 0 2 2 2 0 GAF domain DUF5518 PF17647.1 gi|389845836|ref|YP_006348075.1| - 0.00096 19.3 3.5 0.001 19.2 3.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF3792 PF12670.7 gi|389845836|ref|YP_006348075.1| - 0.021 15.0 1.7 0.023 14.9 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) DUF5379 PF17350.2 gi|389845836|ref|YP_006348075.1| - 0.031 14.5 0.4 0.041 14.1 0.4 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5379) CPP1-like PF11833.8 gi|389845836|ref|YP_006348075.1| - 0.092 12.4 4.5 0.11 12.2 4.5 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like P5CR_dimer PF14748.6 gi|389845836|ref|YP_006348075.1| - 0.13 12.5 1.0 0.15 12.3 1.0 1.1 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation ECF-ribofla_trS PF07155.12 gi|389845836|ref|YP_006348075.1| - 0.53 10.3 5.1 2.8 7.9 5.1 1.8 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component RNB PF00773.19 gi|389845837|ref|YP_006348076.1| - 9.6e-82 274.9 0.2 1.7e-80 270.8 0.2 2.1 1 1 0 1 1 1 1 RNB domain DUF982 PF06169.12 gi|389845837|ref|YP_006348076.1| - 0.0033 17.4 0.0 0.0098 15.9 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF982) Terminase_4 PF05119.12 gi|389845837|ref|YP_006348076.1| - 0.049 14.1 0.0 12 6.4 0.0 2.8 3 0 0 3 3 3 0 Phage terminase, small subunit KTI12 PF08433.10 gi|662859311|ref|YP_006348078.2| - 0.077 12.4 0.1 0.079 12.4 0.1 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ADD_ATRX PF17981.1 gi|662859311|ref|YP_006348078.2| - 0.096 12.6 1.1 3.8 7.5 0.1 2.1 2 0 0 2 2 2 0 Cysteine Rich ADD domain GATA PF00320.27 gi|662859311|ref|YP_006348078.2| - 0.17 11.5 4.1 4.3 7.0 0.5 2.4 2 0 0 2 2 2 0 GATA zinc finger PUA PF01472.20 gi|389845840|ref|YP_006348079.1| - 5.3e-17 61.6 2.6 8.4e-17 60.9 2.6 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|389845840|ref|YP_006348079.1| - 0.0095 16.2 0.1 0.014 15.6 0.1 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain DUF1028 PF06267.12 gi|662859312|ref|YP_006348080.2| - 3.3e-62 209.7 0.6 5.6e-62 209.0 0.6 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF1028) SepF PF04472.12 gi|389845842|ref|YP_006348081.1| - 7.9e-15 54.9 1.4 1.1e-14 54.5 1.4 1.2 1 0 0 1 1 1 1 Cell division protein SepF Rx_N PF18052.1 gi|389845842|ref|YP_006348081.1| - 0.064 13.5 0.0 0.095 13.0 0.0 1.2 1 0 0 1 1 1 0 Rx N-terminal domain UvrA_inter PF17760.1 gi|389845843|ref|YP_006348082.1| - 4.7e-35 120.0 0.0 1.9e-34 118.0 0.0 2.1 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|389845843|ref|YP_006348082.1| - 4.2e-32 110.8 0.1 8e-29 100.2 0.0 3.9 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|389845843|ref|YP_006348082.1| - 5.1e-20 72.4 0.0 5e-11 43.3 0.0 4.0 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|389845843|ref|YP_006348082.1| - 1.3e-12 47.7 0.0 0.0018 17.7 0.0 4.0 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389845843|ref|YP_006348082.1| - 9.4e-09 34.9 0.0 0.0014 18.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DnaJ_CXXCXGXG PF00684.19 gi|389845843|ref|YP_006348082.1| - 4.1e-07 30.3 3.7 0.0029 17.9 0.5 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_16 PF13191.6 gi|389845843|ref|YP_006348082.1| - 5e-07 30.3 0.8 0.033 14.6 0.0 3.5 3 1 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|389845843|ref|YP_006348082.1| - 5.7e-06 26.6 0.2 0.11 12.8 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_15 PF13175.6 gi|389845843|ref|YP_006348082.1| - 4.4e-05 23.4 0.0 0.014 15.1 0.0 3.3 4 0 0 4 4 4 1 AAA ATPase domain AAA_25 PF13481.6 gi|389845843|ref|YP_006348082.1| - 6.5e-05 22.6 0.1 0.38 10.3 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_21 PF13304.6 gi|389845843|ref|YP_006348082.1| - 9.6e-05 22.3 5.9 0.19 11.5 0.0 4.4 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|389845843|ref|YP_006348082.1| - 0.00013 21.9 0.0 0.56 10.1 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase ATPase PF06745.13 gi|389845843|ref|YP_006348082.1| - 0.00018 21.0 0.0 0.053 12.9 0.0 2.5 2 0 0 2 2 2 1 KaiC AAA_23 PF13476.6 gi|389845843|ref|YP_006348082.1| - 0.00036 21.1 0.1 0.1 13.1 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|389845843|ref|YP_006348082.1| - 0.00076 20.0 0.4 0.43 11.1 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|389845843|ref|YP_006348082.1| - 0.0015 18.7 0.0 1.1 9.4 0.0 3.2 3 0 0 3 3 2 1 AAA domain APS_kinase PF01583.20 gi|389845843|ref|YP_006348082.1| - 0.0029 17.5 0.2 5.1 7.0 0.0 3.2 3 0 0 3 3 3 0 Adenylylsulphate kinase cobW PF02492.19 gi|389845843|ref|YP_006348082.1| - 0.0052 16.4 0.2 0.47 10.0 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|389845843|ref|YP_006348082.1| - 0.0054 16.8 0.0 1.4 9.0 0.0 3.2 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|389845843|ref|YP_006348082.1| - 0.0057 17.0 0.0 0.16 12.4 0.0 2.4 2 0 0 2 2 2 1 RNA helicase DUF3987 PF13148.6 gi|389845843|ref|YP_006348082.1| - 0.0079 15.2 0.0 4.3 6.3 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF3987) Viral_helicase1 PF01443.18 gi|389845843|ref|YP_006348082.1| - 0.008 15.9 0.0 0.22 11.3 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|389845843|ref|YP_006348082.1| - 0.0093 15.9 0.0 0.33 10.9 0.0 2.3 2 0 0 2 2 2 1 NACHT domain DUF2075 PF09848.9 gi|389845843|ref|YP_006348082.1| - 0.014 14.6 0.0 4.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) RNA12 PF10443.9 gi|389845843|ref|YP_006348082.1| - 0.014 14.1 0.0 0.43 9.3 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein ATPase_2 PF01637.18 gi|389845843|ref|YP_006348082.1| - 0.015 15.2 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Anti-TRAP PF15777.5 gi|389845843|ref|YP_006348082.1| - 0.038 14.0 5.6 11 6.1 0.6 3.5 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein BCA_ABC_TP_C PF12399.8 gi|389845843|ref|YP_006348082.1| - 0.039 13.9 0.4 0.17 11.9 0.2 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_30 PF13604.6 gi|389845843|ref|YP_006348082.1| - 0.057 13.1 0.3 3 7.5 0.1 2.9 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|389845843|ref|YP_006348082.1| - 0.063 12.5 0.0 0.72 9.0 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|389845843|ref|YP_006348082.1| - 0.098 12.4 0.1 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zn-ribbon_8 PF09723.10 gi|389845843|ref|YP_006348082.1| - 0.1 12.7 6.5 15 5.8 0.1 3.5 3 0 0 3 3 3 0 Zinc ribbon domain AAA_24 PF13479.6 gi|389845843|ref|YP_006348082.1| - 0.16 11.7 0.5 4.9 6.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|389845843|ref|YP_006348082.1| - 0.19 11.8 1.4 4 7.6 0.0 3.2 4 0 0 4 4 3 0 50S ribosome-binding GTPase zinc_ribbon_9 PF14369.6 gi|389845843|ref|YP_006348082.1| - 0.75 10.1 3.9 2.4 8.5 0.1 2.8 3 0 0 3 3 2 0 zinc-ribbon DUF87 PF01935.17 gi|389845843|ref|YP_006348082.1| - 3.8 7.5 4.5 1.7 8.7 0.0 2.7 3 0 0 3 3 2 0 Helicase HerA, central domain CARDB PF07705.11 gi|389845844|ref|YP_006348083.1| - 2.1e-11 44.0 11.0 0.027 14.7 0.0 5.7 5 1 0 5 5 5 3 CARDB NPCBM_assoc PF10633.9 gi|389845844|ref|YP_006348083.1| - 9.4e-06 25.8 24.7 0.0034 17.6 0.3 7.5 5 2 2 7 7 7 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|389845844|ref|YP_006348083.1| - 0.0002 21.6 37.3 0.076 13.3 1.0 7.5 3 2 1 6 6 6 3 Domain of unknown function DUF11 MG2 PF01835.19 gi|389845844|ref|YP_006348083.1| - 0.0026 18.2 0.2 4.5 7.8 0.0 4.4 2 1 3 5 5 5 1 MG2 domain TRAP_beta PF05753.14 gi|389845844|ref|YP_006348083.1| - 0.024 14.0 1.4 5.7 6.3 0.1 3.2 2 1 0 3 3 3 0 Translocon-associated protein beta (TRAPB) PHTB1_C PF14728.6 gi|389845844|ref|YP_006348083.1| - 0.059 12.5 0.1 0.31 10.1 0.1 2.1 2 0 0 2 2 2 0 PTHB1 C-terminus SKG6 PF08693.10 gi|389845844|ref|YP_006348083.1| - 3.1 7.3 7.9 0.094 12.1 1.0 2.2 2 0 0 2 2 2 0 Transmembrane alpha-helix domain ABC_tran PF00005.27 gi|389845845|ref|YP_006348084.1| - 2.6e-24 86.3 0.0 3.9e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389845845|ref|YP_006348084.1| - 7.6e-14 52.2 2.0 2.2e-08 34.3 0.0 2.9 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389845845|ref|YP_006348084.1| - 0.007 16.9 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389845845|ref|YP_006348084.1| - 0.051 14.0 0.0 0.12 12.8 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|389845845|ref|YP_006348084.1| - 0.084 12.6 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|389845845|ref|YP_006348084.1| - 0.19 11.3 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|389845846|ref|YP_006348085.1| - 1.1e-13 51.1 12.5 2.1e-13 50.2 12.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389845846|ref|YP_006348085.1| - 2.5e-08 33.4 6.2 2.5e-08 33.4 6.2 1.7 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389845846|ref|YP_006348085.1| - 4.4e-07 30.0 3.9 2.3e-06 27.7 2.9 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389845846|ref|YP_006348085.1| - 0.00099 18.7 1.3 0.00099 18.7 1.3 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|389845846|ref|YP_006348085.1| - 0.0018 17.7 10.0 0.0035 16.8 10.0 1.5 1 1 0 1 1 1 1 ABC-2 type transporter Sortilin-Vps10 PF15902.5 gi|389845847|ref|YP_006348086.1| - 3.8e-15 55.6 0.0 2.4e-05 23.3 0.0 3.3 1 1 2 3 3 3 3 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|389845847|ref|YP_006348086.1| - 2.5e-10 38.8 25.7 0.27 11.4 0.2 6.5 6 0 0 6 6 6 5 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|389845847|ref|YP_006348086.1| - 9.5e-09 34.9 2.1 0.012 14.9 0.0 3.8 1 1 2 3 3 3 3 Photosynthesis system II assembly factor YCF48 BNR_2 PF13088.6 gi|389845847|ref|YP_006348086.1| - 0.00033 20.1 1.6 0.038 13.3 0.4 2.9 1 1 1 2 2 2 2 BNR repeat-like domain DUF4185 PF13810.6 gi|389845847|ref|YP_006348086.1| - 0.13 11.5 4.6 29 3.8 0.0 3.9 1 1 2 4 4 4 0 Domain of unknown function (DUF4185) FAD_binding_3 PF01494.19 gi|662859313|ref|YP_006348087.2| - 1.2e-13 51.1 2.3 4.2e-10 39.4 0.7 3.0 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|662859313|ref|YP_006348087.2| - 3.2e-06 26.4 0.0 0.02 13.9 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|662859313|ref|YP_006348087.2| - 1.8e-05 24.1 2.1 0.00036 19.9 1.3 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|662859313|ref|YP_006348087.2| - 2e-05 24.4 4.5 0.01 15.5 0.5 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|662859313|ref|YP_006348087.2| - 0.00045 19.7 0.1 0.00064 19.2 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|662859313|ref|YP_006348087.2| - 0.0015 17.7 0.9 0.0021 17.2 0.4 1.5 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|662859313|ref|YP_006348087.2| - 0.0049 17.1 0.4 0.018 15.3 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|662859313|ref|YP_006348087.2| - 0.0092 14.7 0.0 0.015 14.0 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|662859313|ref|YP_006348087.2| - 0.017 14.4 0.2 0.03 13.6 0.2 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|662859313|ref|YP_006348087.2| - 0.064 12.3 0.0 1.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Squalene epoxidase UAE_UbL PF14732.6 gi|662859313|ref|YP_006348087.2| - 0.23 12.1 0.0 0.47 11.1 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain GCV_T PF01571.21 gi|389845849|ref|YP_006348088.1| - 2.6e-39 135.1 0.0 3.9e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|389845849|ref|YP_006348088.1| - 1.4e-10 40.9 0.5 5.9e-10 38.9 0.5 2.1 1 1 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GntR PF00392.21 gi|662859314|ref|YP_006348089.2| - 0.0099 15.5 0.1 0.015 14.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family GGDEF_2 PF17853.1 gi|662859314|ref|YP_006348089.2| - 0.015 15.6 0.2 0.017 15.4 0.2 1.2 1 0 0 1 1 1 0 GGDEF-like domain HTH_20 PF12840.7 gi|662859314|ref|YP_006348089.2| - 0.027 14.5 0.2 0.039 14.0 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|662859314|ref|YP_006348089.2| - 0.029 14.2 0.0 0.04 13.8 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Zn-ribbon_8 PF09723.10 gi|389845851|ref|YP_006348090.1| - 0.0013 18.8 3.8 0.043 13.9 1.1 2.6 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|389845851|ref|YP_006348090.1| - 0.0026 17.1 4.0 0.25 10.8 0.2 3.5 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.7 gi|389845851|ref|YP_006348090.1| - 0.0083 16.1 1.8 0.18 11.9 0.5 2.3 2 0 0 2 2 2 1 Double zinc ribbon DUF1610 PF07754.11 gi|389845851|ref|YP_006348090.1| - 0.029 14.3 1.1 0.029 14.3 1.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) zinc_ribbon_9 PF14369.6 gi|389845851|ref|YP_006348090.1| - 0.045 14.0 4.7 2.1 8.7 0.1 3.3 2 1 1 3 3 3 0 zinc-ribbon zinc_ribbon_10 PF10058.9 gi|389845851|ref|YP_006348090.1| - 0.046 13.5 2.7 0.32 10.8 0.1 3.2 4 0 0 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein ADD_DNMT3 PF17980.1 gi|389845851|ref|YP_006348090.1| - 0.057 13.4 1.4 0.27 11.3 0.1 2.1 2 0 0 2 2 2 0 Cysteine rich ADD domain in DNMT3 Zn_Tnp_IS91 PF14319.6 gi|389845851|ref|YP_006348090.1| - 0.19 11.8 2.0 0.54 10.3 0.4 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|389845851|ref|YP_006348090.1| - 0.2 11.2 7.3 2.6 7.6 3.6 3.3 2 1 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|389845851|ref|YP_006348090.1| - 0.36 10.2 4.6 1.7 8.0 1.4 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.6 gi|389845851|ref|YP_006348090.1| - 0.48 10.4 2.9 36 4.4 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain CDC27 PF09507.10 gi|389845851|ref|YP_006348090.1| - 1.3 8.3 5.6 1.9 7.8 5.6 1.2 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 zf-CCHC_5 PF14787.6 gi|389845851|ref|YP_006348090.1| - 1.9 8.3 4.5 2.4 8.0 0.1 2.9 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger DUF3797 PF12677.7 gi|389845851|ref|YP_006348090.1| - 2 8.4 3.8 36 4.3 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) Anti-TRAP PF15777.5 gi|389845851|ref|YP_006348090.1| - 3 7.9 7.8 0.19 11.7 1.2 2.5 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf_UBZ PF18439.1 gi|389845851|ref|YP_006348090.1| - 6.4 6.5 7.5 23 4.7 0.2 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF5611 PF18446.1 gi|389845852|ref|YP_006348091.1| - 8.5e-31 106.9 0.4 9.6e-31 106.7 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) Entericidin PF08085.11 gi|389845852|ref|YP_006348091.1| - 0.14 12.3 0.1 0.36 10.9 0.1 1.7 1 0 0 1 1 1 0 Entericidin EcnA/B family Usp PF00582.26 gi|389845853|ref|YP_006348092.1| - 1.1e-17 64.9 0.5 1.2e-17 64.7 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family ROK PF00480.20 gi|662859315|ref|YP_006348093.2| - 1.4e-45 156.0 0.1 1.7e-45 155.8 0.1 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|662859315|ref|YP_006348093.2| - 6.6e-06 25.8 0.5 1.6e-05 24.6 0.4 1.4 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|662859315|ref|YP_006348093.2| - 0.00028 20.5 0.1 0.0012 18.4 0.1 1.9 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain LVIVD PF08309.11 gi|389845855|ref|YP_006348094.1| - 1.8e-12 46.4 6.7 0.0032 16.8 0.1 6.5 7 0 0 7 7 7 4 LVIVD repeat Beta_propel PF09826.9 gi|389845855|ref|YP_006348094.1| - 6.6e-05 21.9 0.0 0.99 8.2 0.0 4.2 4 1 0 4 4 4 3 Beta propeller domain TAT_signal PF10518.9 gi|389845855|ref|YP_006348094.1| - 0.072 13.0 0.2 0.072 13.0 0.2 2.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NifU PF01106.17 gi|389845856|ref|YP_006348095.1| - 1.6e-10 41.0 0.3 2.2e-10 40.5 0.3 1.3 1 0 0 1 1 1 1 NifU-like domain HAD_2 PF13419.6 gi|389845857|ref|YP_006348096.1| - 1e-13 51.8 0.0 1.2e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389845857|ref|YP_006348096.1| - 1.7e-11 44.8 0.0 3e-11 44.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389845857|ref|YP_006348096.1| - 1.6e-05 25.4 0.6 3.7e-05 24.2 0.6 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389845857|ref|YP_006348096.1| - 8.5e-05 22.5 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like DUF402 PF04167.13 gi|389845858|ref|YP_006348097.1| - 5.1e-16 58.6 0.7 1.2e-15 57.4 0.7 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.23 gi|389845858|ref|YP_006348097.1| - 0.042 14.2 0.5 0.21 12.0 0.5 2.1 1 1 0 1 1 1 0 S1 RNA binding domain DUF4331 PF14224.6 gi|389845859|ref|YP_006348098.1| - 0.065 12.4 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4331) PrsW-protease PF13367.6 gi|389845860|ref|YP_006348099.1| - 5.9e-47 159.7 15.1 1.1e-46 158.8 15.1 1.4 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease ABC2_membrane_3 PF12698.7 gi|389845860|ref|YP_006348099.1| - 0.22 10.6 10.6 0.49 9.4 10.6 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein Lum_binding PF00677.17 gi|389845861|ref|YP_006348100.1| - 6.9e-43 144.5 0.2 7.4e-22 77.1 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain DUF502 PF04367.13 gi|662859316|ref|YP_006348101.2| - 7.7e-27 93.3 1.1 8.1e-27 93.2 0.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Holin_9 PF16936.5 gi|662859316|ref|YP_006348101.2| - 0.92 9.7 6.4 9.2 6.5 0.6 2.3 1 1 0 2 2 2 0 Putative holin CitMHS PF03600.16 gi|389845863|ref|YP_006348102.1| - 3.9e-56 190.4 1.2 1.5e-55 188.5 0.1 2.0 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.21 gi|389845863|ref|YP_006348102.1| - 1.1e-21 76.4 4.6 4e-11 42.6 0.3 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|389845863|ref|YP_006348102.1| - 7.4e-14 51.6 36.3 1.4e-09 37.5 13.3 3.6 3 1 1 4 4 4 3 Sodium:sulfate symporter transmembrane region Peptidase_M24 PF00557.24 gi|389845865|ref|YP_006348104.1| - 1.7e-09 37.7 0.5 5.7e-09 36.0 0.1 1.8 2 0 0 2 2 2 1 Metallopeptidase family M24 UvrD-helicase PF00580.21 gi|389845866|ref|YP_006348105.1| - 1.1e-25 90.9 0.7 2.9e-24 86.2 0.1 2.6 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|389845866|ref|YP_006348105.1| - 6.5e-23 81.7 0.0 3e-22 79.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|389845866|ref|YP_006348105.1| - 3.2e-15 56.4 0.0 4.6e-10 39.4 0.1 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|389845866|ref|YP_006348105.1| - 1.4e-09 37.6 0.2 0.0021 17.8 0.1 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|389845866|ref|YP_006348105.1| - 4.6e-08 33.0 0.7 0.00019 21.2 0.0 3.0 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|389845866|ref|YP_006348105.1| - 9.3e-05 22.3 0.1 4.4 7.0 0.0 4.1 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|389845866|ref|YP_006348105.1| - 0.0032 17.3 0.0 0.045 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|389845866|ref|YP_006348105.1| - 0.013 15.2 0.1 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase Herpes_ori_bp PF02399.15 gi|389845866|ref|YP_006348105.1| - 0.02 13.0 0.0 0.031 12.3 0.0 1.2 1 0 0 1 1 1 0 Origin of replication binding protein AAA_12 PF13087.6 gi|389845866|ref|YP_006348105.1| - 0.021 14.4 0.1 0.062 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|389845866|ref|YP_006348105.1| - 0.022 14.4 0.1 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|389845866|ref|YP_006348105.1| - 0.024 14.9 0.0 4.9 7.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|389845866|ref|YP_006348105.1| - 0.034 13.7 1.6 0.62 9.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain zinc_ribbon_2 PF13240.6 gi|662859317|ref|YP_006348106.2| - 0.00043 19.9 1.3 0.00043 19.9 1.3 1.5 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|662859317|ref|YP_006348106.2| - 0.00095 19.1 0.2 0.00099 19.1 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|662859317|ref|YP_006348106.2| - 0.0042 16.5 3.8 0.01 15.2 3.5 1.8 1 1 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|662859317|ref|YP_006348106.2| - 0.011 15.4 0.8 0.45 10.3 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.20 gi|662859317|ref|YP_006348106.2| - 0.024 14.7 0.8 2.7 8.1 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|662859317|ref|YP_006348106.2| - 0.049 13.8 1.3 0.22 11.7 0.0 2.0 1 1 1 2 2 2 0 Zinc ribbon domain CpXC PF14353.6 gi|662859317|ref|YP_006348106.2| - 0.1 12.6 0.8 0.18 11.9 0.8 1.5 1 1 0 1 1 1 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|662859317|ref|YP_006348106.2| - 0.13 12.2 1.8 2.5 8.1 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|662859317|ref|YP_006348106.2| - 0.23 11.0 3.9 1 8.9 4.0 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|662859317|ref|YP_006348106.2| - 0.23 11.1 0.3 0.23 11.1 0.3 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_3 PF13878.6 gi|662859317|ref|YP_006348106.2| - 0.52 10.2 3.2 10 6.1 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-IS66 PF13005.7 gi|662859317|ref|YP_006348106.2| - 0.53 10.7 4.6 2.4 8.6 4.5 2.0 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Peptidase_M32 PF02074.15 gi|389845868|ref|YP_006348107.1| - 1.1e-181 604.9 0.2 1.2e-181 604.8 0.2 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF3391 PF11871.8 gi|389845868|ref|YP_006348107.1| - 0.26 11.8 2.6 14 6.2 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Peptidase_M20 PF01546.28 gi|389845869|ref|YP_006348108.1| - 1.3e-30 106.6 3.2 1.7e-30 106.3 3.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|389845869|ref|YP_006348108.1| - 3.9e-13 49.3 0.0 7.5e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF2478 PF10649.9 gi|389845869|ref|YP_006348108.1| - 0.005 16.5 0.3 0.0098 15.5 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) Peptidase_M28 PF04389.17 gi|389845869|ref|YP_006348108.1| - 0.012 15.3 0.7 0.012 15.3 0.7 1.6 2 0 0 2 2 2 0 Peptidase family M28 MCPsignal PF00015.21 gi|389845870|ref|YP_006348109.1| - 3.1e-41 141.0 48.3 8.3e-40 136.4 21.2 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|389845870|ref|YP_006348109.1| - 6.7e-09 36.0 13.2 9.3e-07 29.1 0.0 6.6 6 2 0 6 6 6 1 HAMP domain DUF948 PF06103.11 gi|389845870|ref|YP_006348109.1| - 1.6e-07 31.5 33.3 0.00057 20.1 2.8 5.9 2 1 4 6 6 6 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|389845870|ref|YP_006348109.1| - 1.6e-05 25.1 21.3 0.049 13.9 1.1 4.7 3 2 2 5 5 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|389845870|ref|YP_006348109.1| - 9.4e-05 22.4 21.9 0.18 11.8 2.4 5.5 3 2 4 7 7 7 4 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 gi|389845870|ref|YP_006348109.1| - 0.00047 20.5 1.9 1.4 9.3 0.0 4.2 3 2 2 5 5 5 1 Syntaxin-like protein AIP3 PF03915.13 gi|389845870|ref|YP_006348109.1| - 0.00097 18.3 14.2 0.079 12.0 1.8 2.2 2 0 0 2 2 2 2 Actin interacting protein 3 Mating_N PF12731.7 gi|389845870|ref|YP_006348109.1| - 0.0072 16.4 13.0 0.24 11.5 1.1 4.1 4 1 0 4 4 3 2 Mating-type protein beta 1 Nup88 PF10168.9 gi|389845870|ref|YP_006348109.1| - 0.0096 13.8 8.5 0.091 10.6 0.3 2.2 2 0 0 2 2 2 2 Nuclear pore component Syntaxin-6_N PF09177.11 gi|389845870|ref|YP_006348109.1| - 0.034 14.7 22.1 0.061 13.9 3.2 4.8 2 2 2 4 4 4 0 Syntaxin 6, N-terminal DUF489 PF04356.12 gi|389845870|ref|YP_006348109.1| - 0.034 14.1 9.7 0.12 12.4 1.6 3.2 2 1 2 4 4 4 0 Protein of unknown function (DUF489) ING PF12998.7 gi|389845870|ref|YP_006348109.1| - 0.052 14.1 2.4 2.6 8.7 0.6 3.3 2 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding CALCOCO1 PF07888.11 gi|389845870|ref|YP_006348109.1| - 0.064 12.1 13.5 0.39 9.5 3.8 2.4 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like RmuC PF02646.16 gi|389845870|ref|YP_006348109.1| - 0.066 12.3 14.5 0.75 8.9 0.7 4.7 2 2 3 5 5 5 0 RmuC family NPV_P10 PF05531.12 gi|389845870|ref|YP_006348109.1| - 0.13 12.7 24.9 3 8.4 0.9 6.1 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Muted PF14942.6 gi|389845870|ref|YP_006348109.1| - 0.16 12.3 12.1 0.13 12.6 1.3 2.9 3 0 0 3 3 2 0 Organelle biogenesis, Muted-like protein Spc7 PF08317.11 gi|389845870|ref|YP_006348109.1| - 0.17 10.8 16.5 0.074 11.9 3.4 2.7 3 0 0 3 3 3 0 Spc7 kinetochore protein COG6 PF06419.11 gi|389845870|ref|YP_006348109.1| - 0.2 9.8 10.3 0.49 8.6 0.4 3.0 2 1 1 3 3 3 0 Conserved oligomeric complex COG6 MAD PF05557.13 gi|389845870|ref|YP_006348109.1| - 0.2 10.0 9.6 0.11 10.9 2.0 2.1 2 0 0 2 2 2 0 Mitotic checkpoint protein GAS PF13851.6 gi|389845870|ref|YP_006348109.1| - 0.25 10.7 5.8 0.92 8.8 0.1 2.6 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding EspB_PE PF18625.1 gi|389845870|ref|YP_006348109.1| - 0.31 11.5 14.3 0.68 10.4 2.7 4.3 2 2 0 3 3 3 0 ESX-1 secreted protein B PE domain IFT57 PF10498.9 gi|389845870|ref|YP_006348109.1| - 0.35 9.8 12.6 1.4 7.8 1.4 2.6 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 DUF2203 PF09969.9 gi|389845870|ref|YP_006348109.1| - 0.38 11.5 22.5 2.3 9.0 1.7 5.2 3 2 3 6 6 6 0 Uncharacterized conserved protein (DUF2203) Allexi_40kDa PF05549.11 gi|389845870|ref|YP_006348109.1| - 0.51 9.8 12.2 0.13 11.7 1.2 2.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein FlaC_arch PF05377.11 gi|389845870|ref|YP_006348109.1| - 0.51 10.8 15.0 4.2 7.8 1.1 5.5 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) Nup54 PF13874.6 gi|389845870|ref|YP_006348109.1| - 0.56 10.3 11.0 2.7 8.1 2.5 2.9 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 Seryl_tRNA_N PF02403.22 gi|389845870|ref|YP_006348109.1| - 0.6 10.4 17.6 0.18 12.0 1.1 4.3 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DASH_Dad2 PF08654.10 gi|389845870|ref|YP_006348109.1| - 0.71 10.3 19.3 0.28 11.6 3.4 4.7 2 1 3 5 5 4 0 DASH complex subunit Dad2 Laminin_II PF06009.12 gi|389845870|ref|YP_006348109.1| - 0.72 9.9 31.6 1.2 9.2 2.6 5.0 2 2 3 5 5 5 0 Laminin Domain II DUF3450 PF11932.8 gi|389845870|ref|YP_006348109.1| - 0.78 9.0 26.6 0.36 10.1 1.6 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) Taxilin PF09728.9 gi|389845870|ref|YP_006348109.1| - 0.88 8.7 9.3 3.4 6.8 0.2 3.1 2 1 1 3 3 3 0 Myosin-like coiled-coil protein DASH_Dad1 PF08649.10 gi|389845870|ref|YP_006348109.1| - 0.89 9.8 2.5 4.4 7.6 0.2 3.2 3 0 0 3 3 3 0 DASH complex subunit Dad1 UPF0242 PF06785.11 gi|389845870|ref|YP_006348109.1| - 1.4 9.0 9.9 3.1 7.8 1.2 3.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Sec34 PF04136.15 gi|389845870|ref|YP_006348109.1| - 2.9 7.7 13.0 7.3 6.5 1.0 4.2 3 2 1 4 4 3 0 Sec34-like family BST2 PF16716.5 gi|389845870|ref|YP_006348109.1| - 3.2 8.4 11.6 25 5.6 0.2 4.0 2 2 1 3 3 3 0 Bone marrow stromal antigen 2 Prominin PF05478.11 gi|389845870|ref|YP_006348109.1| - 4.1 5.3 12.4 3.7 5.4 3.6 2.3 1 1 0 2 2 2 0 Prominin Lectin_N PF03954.14 gi|389845870|ref|YP_006348109.1| - 4.3 7.1 8.0 9.7 5.9 0.5 3.7 4 0 0 4 4 4 0 Hepatic lectin, N-terminal domain HAP1_N PF04849.13 gi|389845870|ref|YP_006348109.1| - 4.4 6.4 17.8 2.4 7.3 2.6 2.8 2 1 1 3 3 3 0 HAP1 N-terminal conserved region Fez1 PF06818.15 gi|389845870|ref|YP_006348109.1| - 5.5 7.4 11.3 6.4 7.2 1.8 2.5 2 0 0 2 2 2 0 Fez1 TMPIT PF07851.13 gi|389845870|ref|YP_006348109.1| - 5.9 6.0 11.1 5.6 6.1 0.2 3.1 2 2 2 4 4 4 0 TMPIT-like protein V_ATPase_I PF01496.19 gi|389845870|ref|YP_006348109.1| - 6.2 4.6 14.2 68 1.2 14.2 2.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4200 PF13863.6 gi|389845870|ref|YP_006348109.1| - 8.3 6.8 7.1 15 6.0 0.0 3.6 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) Filament PF00038.21 gi|389845870|ref|YP_006348109.1| - 8.3 5.9 18.9 3.4 7.2 4.1 2.6 3 0 0 3 3 2 0 Intermediate filament protein T2SSE PF00437.20 gi|662859318|ref|YP_006348110.2| - 8.3e-14 51.3 0.0 1.4e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|662859318|ref|YP_006348110.2| - 0.00014 22.3 0.0 0.00039 20.9 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|662859318|ref|YP_006348110.2| - 0.00026 20.7 0.0 0.0018 18.0 0.0 2.1 2 1 1 3 3 2 1 Thymidylate kinase KH_1 PF00013.29 gi|662859318|ref|YP_006348110.2| - 0.0011 18.8 0.1 0.003 17.3 0.1 1.7 1 0 0 1 1 1 1 KH domain NTPase_1 PF03266.15 gi|662859318|ref|YP_006348110.2| - 0.002 18.0 0.0 0.0055 16.6 0.0 1.8 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.6 gi|662859318|ref|YP_006348110.2| - 0.008 16.7 0.0 0.024 15.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|662859318|ref|YP_006348110.2| - 0.0082 15.4 0.0 0.019 14.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin KH_2 PF07650.17 gi|662859318|ref|YP_006348110.2| - 0.0097 15.7 1.3 0.024 14.5 1.3 1.6 1 0 0 1 1 1 1 KH domain AAA_29 PF13555.6 gi|662859318|ref|YP_006348110.2| - 0.013 15.2 0.0 0.034 13.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|662859318|ref|YP_006348110.2| - 0.016 14.8 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|662859318|ref|YP_006348110.2| - 0.016 15.2 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|662859318|ref|YP_006348110.2| - 0.016 15.0 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|662859318|ref|YP_006348110.2| - 0.023 14.9 0.0 0.077 13.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|662859318|ref|YP_006348110.2| - 0.025 15.0 0.0 0.048 14.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|662859318|ref|YP_006348110.2| - 0.025 14.0 0.1 0.058 12.8 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 TsaE PF02367.17 gi|662859318|ref|YP_006348110.2| - 0.027 14.5 0.0 0.086 12.8 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|662859318|ref|YP_006348110.2| - 0.035 13.4 0.0 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 KaiC ATP_bind_1 PF03029.17 gi|662859318|ref|YP_006348110.2| - 0.036 13.8 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|662859318|ref|YP_006348110.2| - 0.057 13.7 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|662859318|ref|YP_006348110.2| - 0.058 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|662859318|ref|YP_006348110.2| - 0.06 13.1 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain KH_5 PF13184.6 gi|662859318|ref|YP_006348110.2| - 0.065 13.3 0.2 0.18 11.9 0.2 1.8 1 0 0 1 1 1 0 NusA-like KH domain APS_kinase PF01583.20 gi|662859318|ref|YP_006348110.2| - 0.082 12.8 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.12 gi|662859318|ref|YP_006348110.2| - 0.085 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.12 gi|662859318|ref|YP_006348110.2| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|662859318|ref|YP_006348110.2| - 0.14 12.6 0.0 0.43 11.1 0.0 1.8 2 0 0 2 2 1 0 ABC transporter Sigma54_activ_2 PF14532.6 gi|662859318|ref|YP_006348110.2| - 0.16 12.1 0.0 0.59 10.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain KH_4 PF13083.6 gi|662859318|ref|YP_006348110.2| - 0.24 11.3 2.3 0.42 10.5 0.7 2.3 2 0 0 2 2 2 0 KH domain HTH_24 PF13412.6 gi|389845872|ref|YP_006348111.1| - 0.0021 17.6 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|389845872|ref|YP_006348111.1| - 0.0095 16.4 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|389845872|ref|YP_006348111.1| - 0.0099 15.8 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 1 Dimerisation domain GntR PF00392.21 gi|389845872|ref|YP_006348111.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|389845872|ref|YP_006348111.1| - 0.017 15.0 0.1 0.021 14.7 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|389845872|ref|YP_006348111.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|389845872|ref|YP_006348111.1| - 0.025 14.5 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|389845872|ref|YP_006348111.1| - 0.064 13.1 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.12 gi|389845872|ref|YP_006348111.1| - 0.11 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF1634 PF07843.11 gi|389845873|ref|YP_006348112.1| - 0.0015 18.6 4.0 0.0027 17.8 4.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) MerE PF05052.12 gi|389845873|ref|YP_006348112.1| - 0.15 12.0 3.0 0.27 11.2 3.0 1.5 1 0 0 1 1 1 0 MerE protein PT-VENN PF04829.13 gi|389845873|ref|YP_006348112.1| - 0.26 11.4 5.9 0.44 10.7 5.9 1.4 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif ABC_tran PF00005.27 gi|389845874|ref|YP_006348113.1| - 2.3e-40 138.3 0.0 2.9e-21 76.4 0.0 2.9 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|389845874|ref|YP_006348113.1| - 1.7e-14 53.8 5.4 0.00022 20.7 0.0 4.5 5 0 0 5 5 5 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|389845874|ref|YP_006348113.1| - 5.3e-11 42.2 0.3 1.1e-10 41.2 0.3 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|389845874|ref|YP_006348113.1| - 5.3e-11 42.9 5.8 0.06 13.2 0.2 4.2 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389845874|ref|YP_006348113.1| - 6.4e-09 36.6 0.0 0.0039 17.7 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|389845874|ref|YP_006348113.1| - 8.3e-08 32.8 0.1 0.0074 16.7 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|389845874|ref|YP_006348113.1| - 4.2e-05 24.0 0.0 0.051 14.0 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|389845874|ref|YP_006348113.1| - 4.7e-05 23.0 0.5 0.18 11.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|389845874|ref|YP_006348113.1| - 5e-05 23.6 0.0 0.082 13.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|389845874|ref|YP_006348113.1| - 0.00021 21.6 0.0 0.54 10.7 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|389845874|ref|YP_006348113.1| - 0.00025 20.8 0.0 0.36 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|389845874|ref|YP_006348113.1| - 0.00028 20.9 0.0 0.99 9.4 0.0 3.6 3 1 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|389845874|ref|YP_006348113.1| - 0.00057 19.8 0.0 0.61 10.0 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Fer4 PF00037.27 gi|389845874|ref|YP_006348113.1| - 0.00057 19.6 1.6 0.00057 19.6 1.6 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain NB-ARC PF00931.22 gi|389845874|ref|YP_006348113.1| - 0.00074 18.8 0.0 0.25 10.5 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Rad17 PF03215.15 gi|389845874|ref|YP_006348113.1| - 0.00075 19.5 0.0 0.6 10.0 0.0 2.9 2 1 1 3 3 3 1 Rad17 P-loop domain NACHT PF05729.12 gi|389845874|ref|YP_006348113.1| - 0.0011 18.9 0.3 1.6 8.7 0.0 2.6 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.6 gi|389845874|ref|YP_006348113.1| - 0.0018 17.9 1.5 9.1 5.8 0.0 3.7 4 0 0 4 4 4 0 AAA domain AAA_15 PF13175.6 gi|389845874|ref|YP_006348113.1| - 0.0023 17.7 0.6 1.7 8.3 0.1 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.6 gi|389845874|ref|YP_006348113.1| - 0.0024 18.1 0.1 2.6 8.2 0.2 3.1 2 1 0 2 2 2 1 AAA domain Fer4_6 PF12837.7 gi|389845874|ref|YP_006348113.1| - 0.003 17.6 11.9 0.0086 16.1 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_28 PF13521.6 gi|389845874|ref|YP_006348113.1| - 0.0047 17.2 0.3 1.4 9.1 0.0 3.3 3 0 0 3 3 3 1 AAA domain MukB PF04310.12 gi|389845874|ref|YP_006348113.1| - 0.0059 16.4 0.4 2.9 7.7 0.0 2.5 2 0 0 2 2 2 1 MukB N-terminal MMR_HSR1 PF01926.23 gi|389845874|ref|YP_006348113.1| - 0.016 15.3 0.4 4.6 7.4 0.1 3.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|389845874|ref|YP_006348113.1| - 0.019 15.5 0.0 2 9.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain Fer4_7 PF12838.7 gi|389845874|ref|YP_006348113.1| - 0.031 14.9 9.5 0.068 13.8 9.5 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_5 PF07728.14 gi|389845874|ref|YP_006348113.1| - 0.034 14.1 0.0 5.8 6.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Fer4_10 PF13237.6 gi|389845874|ref|YP_006348113.1| - 0.047 13.8 11.1 0.18 11.9 11.6 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain RuvB_N PF05496.12 gi|389845874|ref|YP_006348113.1| - 0.048 13.4 0.5 17 5.1 0.1 2.9 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|389845874|ref|YP_006348113.1| - 0.13 12.0 0.8 7.2 6.3 0.1 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.22 gi|389845874|ref|YP_006348113.1| - 0.14 11.8 0.6 2.9 7.5 0.0 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain Roc PF08477.13 gi|389845874|ref|YP_006348113.1| - 0.21 11.8 0.1 25 5.1 0.0 3.0 2 1 1 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase Fer4_2 PF12797.7 gi|389845874|ref|YP_006348113.1| - 0.23 11.7 11.3 0.17 12.1 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|389845874|ref|YP_006348113.1| - 0.43 10.8 9.7 0.89 9.8 9.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|389845874|ref|YP_006348113.1| - 0.49 10.6 7.8 0.89 9.7 7.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|389845874|ref|YP_006348113.1| - 0.59 10.0 3.9 26 4.7 0.1 3.3 4 0 0 4 4 3 0 NTPase Fer4_16 PF13484.6 gi|389845874|ref|YP_006348113.1| - 6.1 7.9 8.9 0.9 10.5 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain AAA_30 PF13604.6 gi|389845874|ref|YP_006348113.1| - 6.9 6.3 6.3 5.3 6.7 0.1 3.1 5 0 0 5 5 3 0 AAA domain Glyoxalase PF00903.25 gi|389845875|ref|YP_006348114.1| - 2.4e-20 73.0 0.1 3e-09 37.2 0.2 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|389845875|ref|YP_006348114.1| - 2e-09 38.2 1.4 4.9e-06 27.3 0.0 2.5 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|389845875|ref|YP_006348114.1| - 0.0033 17.7 0.2 0.21 11.9 0.1 2.9 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PBP PF01161.20 gi|662859319|ref|YP_006348115.2| - 4.2e-39 133.9 0.1 5e-39 133.6 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein RTC PF01137.21 gi|389845877|ref|YP_006348116.1| - 7.9e-69 231.2 0.0 1e-68 230.9 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|389845877|ref|YP_006348116.1| - 1.4e-13 51.2 0.3 2.7e-13 50.3 0.3 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Usp PF00582.26 gi|389845878|ref|YP_006348117.1| - 6.5e-27 94.8 3.5 8.5e-27 94.4 3.5 1.2 1 0 0 1 1 1 1 Universal stress protein family Peptidase_M54 PF07998.11 gi|662859320|ref|YP_006348118.2| - 2.6e-22 79.8 0.1 3.1e-22 79.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M54 DUF4953 PF16313.5 gi|662859320|ref|YP_006348118.2| - 1.7e-05 24.2 0.0 2.4e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Met-zincin Peptidase_M10 PF00413.24 gi|662859320|ref|YP_006348118.2| - 3.7e-05 23.6 0.0 3.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.6 gi|662859320|ref|YP_006348118.2| - 5.5e-05 22.9 0.0 6.7e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|662859320|ref|YP_006348118.2| - 0.00043 20.2 0.0 0.00051 20.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|662859320|ref|YP_006348118.2| - 0.00075 19.7 0.0 0.00081 19.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 gi|662859320|ref|YP_006348118.2| - 0.00079 19.9 0.0 0.00099 19.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Zincin_1 PF06262.11 gi|662859320|ref|YP_006348118.2| - 0.0095 16.0 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 1 Zincin-like metallopeptidase Peptidase_M57 PF12388.8 gi|662859320|ref|YP_006348118.2| - 0.021 14.4 0.9 0.066 12.8 0.3 1.9 1 1 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Peptidase_M66 PF10462.9 gi|662859320|ref|YP_006348118.2| - 0.024 13.6 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.8 gi|662859320|ref|YP_006348118.2| - 0.028 13.0 0.1 0.038 12.6 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Reprolysin PF01421.19 gi|662859320|ref|YP_006348118.2| - 0.052 13.4 0.0 0.071 13.0 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Peptidase_M43 PF05572.13 gi|662859320|ref|YP_006348118.2| - 0.056 13.4 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A UPF0146 PF03686.13 gi|662859321|ref|YP_006348119.2| - 1.4e-25 89.7 0.1 1.8e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Hydrolase PF00702.26 gi|389845881|ref|YP_006348120.1| - 1.9e-10 41.4 3.0 2.3e-09 37.8 3.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389845881|ref|YP_006348120.1| - 2.1e-09 37.7 0.0 3.1e-07 30.7 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389845881|ref|YP_006348120.1| - 3.6e-06 26.9 1.2 1.1e-05 25.3 0.2 2.4 3 1 0 3 3 3 1 HAD-hyrolase-like Lactamase_B PF00753.27 gi|389845881|ref|YP_006348120.1| - 0.0061 16.6 0.5 0.013 15.5 0.5 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TatC PF00902.18 gi|389845882|ref|YP_006348121.1| - 0.01 15.7 1.3 0.013 15.3 1.3 1.2 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) F420_oxidored PF03807.17 gi|389845883|ref|YP_006348122.1| - 2.3e-21 76.2 0.0 3.5e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|389845883|ref|YP_006348122.1| - 9.4e-06 25.9 0.0 1.5e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PDH PF02153.17 gi|389845883|ref|YP_006348122.1| - 0.00055 19.0 0.0 0.00083 18.4 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389845883|ref|YP_006348122.1| - 0.00059 19.8 0.0 0.00082 19.4 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|389845883|ref|YP_006348122.1| - 0.0083 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|389845883|ref|YP_006348122.1| - 0.011 16.5 0.0 0.022 15.6 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold KR PF08659.10 gi|389845883|ref|YP_006348122.1| - 0.021 14.8 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 KR domain ApbA PF02558.16 gi|389845883|ref|YP_006348122.1| - 0.028 14.1 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 gi|389845883|ref|YP_006348122.1| - 0.076 13.5 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PRA-PH PF01503.17 gi|389845884|ref|YP_006348123.1| - 1.3e-15 57.6 0.9 1.6e-15 57.3 0.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Csm1_B PF18211.1 gi|389845884|ref|YP_006348123.1| - 0.05 13.4 0.1 0.081 12.8 0.1 1.3 1 0 0 1 1 1 0 Csm1 subunit domain B SNO PF01174.19 gi|389845885|ref|YP_006348124.1| - 8.5e-53 179.0 0.0 9.8e-53 178.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|389845885|ref|YP_006348124.1| - 2.5e-10 40.3 0.0 5.2e-10 39.3 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|389845885|ref|YP_006348124.1| - 0.0014 18.3 0.0 0.0018 18.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|389845885|ref|YP_006348124.1| - 0.031 14.0 0.0 0.16 11.7 0.0 1.9 1 1 0 1 1 1 0 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|389845885|ref|YP_006348124.1| - 0.04 13.7 0.1 0.065 13.0 0.1 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family PTS_IIB PF02302.17 gi|389845885|ref|YP_006348124.1| - 0.12 13.0 0.1 11 6.8 0.0 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Sec61_beta PF03911.16 gi|662859322|ref|YP_006348125.2| - 1.2e-16 60.5 0.0 1.6e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family Thioredoxin PF00085.20 gi|389845887|ref|YP_006348126.1| - 3.2e-23 81.7 0.0 3.8e-23 81.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|389845887|ref|YP_006348126.1| - 4e-08 33.5 0.0 7.6e-06 26.2 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|389845887|ref|YP_006348126.1| - 5e-08 33.4 0.3 4.2e-07 30.4 0.3 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|389845887|ref|YP_006348126.1| - 7.7e-05 22.6 0.1 0.00011 22.1 0.1 1.3 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|389845887|ref|YP_006348126.1| - 0.00013 21.7 0.0 0.00015 21.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|389845887|ref|YP_006348126.1| - 0.00041 20.3 0.0 0.00043 20.2 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DSBA PF01323.20 gi|389845887|ref|YP_006348126.1| - 0.0014 18.5 0.3 0.03 14.1 0.1 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.6 gi|389845887|ref|YP_006348126.1| - 0.0018 18.4 0.9 0.0044 17.2 0.3 1.9 2 1 0 2 2 2 1 Thioredoxin-like Redoxin PF08534.10 gi|389845887|ref|YP_006348126.1| - 0.0033 17.2 0.1 0.19 11.4 0.0 2.0 1 1 1 2 2 2 1 Redoxin Glutaredoxin PF00462.24 gi|389845887|ref|YP_006348126.1| - 0.0039 17.4 0.0 0.0058 16.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin OST3_OST6 PF04756.13 gi|389845887|ref|YP_006348126.1| - 0.02 14.3 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Phosducin PF02114.16 gi|389845887|ref|YP_006348126.1| - 0.039 12.9 0.0 0.039 12.9 0.0 1.0 1 0 0 1 1 1 0 Phosducin DUF836 PF05768.14 gi|389845887|ref|YP_006348126.1| - 0.059 13.8 0.1 0.07 13.6 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|389845887|ref|YP_006348126.1| - 0.064 13.3 0.0 0.072 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_5 PF13743.6 gi|389845887|ref|YP_006348126.1| - 0.082 12.6 0.1 0.086 12.5 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin DUF953 PF06110.11 gi|389845887|ref|YP_006348126.1| - 0.12 12.0 0.2 0.24 11.0 0.2 1.5 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Ribosomal_L40e PF01020.17 gi|389845888|ref|YP_006348127.1| - 1.4e-06 28.1 9.6 1.6e-06 27.9 9.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|389845888|ref|YP_006348127.1| - 3.3e-05 23.4 3.0 4.2e-05 23.1 3.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|389845888|ref|YP_006348127.1| - 0.00025 21.0 1.8 0.00025 21.0 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-CHY PF05495.12 gi|389845888|ref|YP_006348127.1| - 0.0047 17.4 2.7 0.0047 17.4 2.7 1.1 1 0 0 1 1 1 1 CHY zinc finger DNA_RNApol_7kD PF03604.13 gi|389845888|ref|YP_006348127.1| - 0.0078 15.9 5.9 0.014 15.1 5.9 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|389845888|ref|YP_006348127.1| - 0.047 13.9 5.4 0.06 13.5 5.4 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ribbon_3 PF13248.6 gi|389845888|ref|YP_006348127.1| - 0.18 11.3 3.6 0.26 10.8 3.6 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DHHC PF01529.20 gi|389845888|ref|YP_006348127.1| - 0.21 11.7 3.8 0.23 11.6 3.8 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Phage_holin_2_3 PF16080.5 gi|389845889|ref|YP_006348128.1| - 2.4 8.0 8.9 0.24 11.2 2.7 2.2 2 0 0 2 2 2 0 Bacteriophage holin family HP1 SKG6 PF08693.10 gi|389845889|ref|YP_006348128.1| - 4.9 6.7 8.3 0.26 10.7 0.8 2.6 2 1 0 2 2 2 0 Transmembrane alpha-helix domain Lactamase_B PF00753.27 gi|389845890|ref|YP_006348129.1| - 5e-20 72.4 9.2 4.6e-18 65.9 9.2 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389845890|ref|YP_006348129.1| - 1.6e-07 31.1 2.7 1.2e-06 28.2 2.7 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|389845890|ref|YP_006348129.1| - 0.012 15.0 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|389845890|ref|YP_006348129.1| - 0.025 14.5 0.9 0.042 13.7 0.9 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF99 PF01949.16 gi|389845892|ref|YP_006348131.1| - 5.4e-57 192.2 0.0 6.3e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 McyA_C PF12593.8 gi|389845892|ref|YP_006348131.1| - 0.021 14.6 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Microcystin synthetase C terminal UDG PF03167.19 gi|389845893|ref|YP_006348132.1| - 2.6e-37 128.2 0.0 3.2e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC_tran PF00005.27 gi|389845895|ref|YP_006348134.1| - 1.9e-34 119.1 0.0 2.5e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389845895|ref|YP_006348134.1| - 9e-09 35.6 0.0 0.00023 21.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|389845895|ref|YP_006348134.1| - 2.9e-05 24.0 0.0 5.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|389845895|ref|YP_006348134.1| - 9.4e-05 22.9 0.1 0.00013 22.4 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|389845895|ref|YP_006348134.1| - 0.00015 21.8 0.0 0.15 12.2 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|389845895|ref|YP_006348134.1| - 0.00052 19.7 0.0 0.00098 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389845895|ref|YP_006348134.1| - 0.00092 18.7 0.0 0.035 13.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389845895|ref|YP_006348134.1| - 0.0045 17.3 0.1 0.0096 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|389845895|ref|YP_006348134.1| - 0.01 16.3 0.0 0.017 15.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389845895|ref|YP_006348134.1| - 0.012 15.3 0.2 0.017 14.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|389845895|ref|YP_006348134.1| - 0.017 15.7 0.0 0.077 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|389845895|ref|YP_006348134.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|389845895|ref|YP_006348134.1| - 0.019 15.2 2.7 1.4 9.2 0.6 3.1 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|389845895|ref|YP_006348134.1| - 0.022 15.0 0.0 0.044 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|389845895|ref|YP_006348134.1| - 0.031 13.5 0.0 0.053 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|389845895|ref|YP_006348134.1| - 0.038 14.1 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|389845895|ref|YP_006348134.1| - 0.041 12.5 0.0 4.7 5.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|389845895|ref|YP_006348134.1| - 0.046 13.7 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|389845895|ref|YP_006348134.1| - 0.052 13.1 0.0 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|389845895|ref|YP_006348134.1| - 0.1 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|389845895|ref|YP_006348134.1| - 0.17 11.6 0.0 0.88 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 gi|389845895|ref|YP_006348134.1| - 0.23 11.3 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Phosphonate-bd PF12974.7 gi|389845896|ref|YP_006348135.1| - 1.4e-52 178.7 2.3 1.7e-52 178.5 2.3 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|389845896|ref|YP_006348135.1| - 8.4e-07 29.2 0.1 1.3e-06 28.6 0.1 1.2 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|389845896|ref|YP_006348135.1| - 1e-05 25.1 0.1 1.8e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.9 gi|389845896|ref|YP_006348135.1| - 0.0029 17.4 0.1 0.0029 17.4 0.1 2.2 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.6 gi|389845896|ref|YP_006348135.1| - 0.045 13.5 0.6 0.075 12.8 0.6 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein GATase PF00117.28 gi|389845897|ref|YP_006348136.1| - 4.5e-24 85.3 0.0 5.5e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|389845897|ref|YP_006348136.1| - 5.4e-09 35.9 0.0 9.2e-09 35.2 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|389845897|ref|YP_006348136.1| - 4.9e-07 29.8 0.0 0.00069 19.5 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|389845897|ref|YP_006348136.1| - 4.4e-06 26.6 1.2 0.00011 22.0 1.2 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|389845897|ref|YP_006348136.1| - 0.0035 17.1 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family PDT PF00800.18 gi|389845898|ref|YP_006348137.1| - 8.4e-46 156.1 0.1 1e-45 155.8 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|389845898|ref|YP_006348137.1| - 1.9e-06 27.6 0.0 5.1e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 ACT domain TIP39 PF14980.6 gi|389845898|ref|YP_006348137.1| - 0.084 12.8 0.1 0.26 11.2 0.1 1.8 1 0 0 1 1 1 0 TIP39 peptide HSP20 PF00011.21 gi|389845899|ref|YP_006348138.1| - 7.3e-25 87.1 0.2 8.6e-25 86.9 0.2 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389845899|ref|YP_006348138.1| - 6.9e-16 57.6 0.2 2.4e-15 55.8 0.1 1.9 2 0 0 2 2 2 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|389845899|ref|YP_006348138.1| - 0.005 16.9 1.8 0.0064 16.6 1.6 1.4 1 1 0 1 1 1 1 GvpH HSP20 PF00011.21 gi|389845900|ref|YP_006348139.1| - 6.6e-22 77.6 0.5 1e-21 77.0 0.1 1.5 2 0 0 2 2 2 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389845900|ref|YP_006348139.1| - 2e-15 56.1 0.1 3.7e-15 55.2 0.1 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|389845900|ref|YP_006348139.1| - 0.016 15.3 1.0 0.025 14.6 1.0 1.6 1 1 0 1 1 1 0 GvpH DASH_Hsk3 PF08227.11 gi|389845900|ref|YP_006348139.1| - 0.1 13.0 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 DASH complex subunit Hsk3 like PIH1_CS PF18201.1 gi|389845900|ref|YP_006348139.1| - 0.12 12.8 0.0 0.25 11.8 0.0 1.5 1 1 0 1 1 1 0 PIH1 CS-like domain Lactococcin_972 PF09683.10 gi|389845900|ref|YP_006348139.1| - 0.13 12.9 0.1 0.2 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacteriocin (Lactococcin_972) tRNA-synt_1 PF00133.22 gi|389845901|ref|YP_006348140.1| - 3.6e-52 177.4 0.1 3.7e-51 174.1 0.1 2.3 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|389845901|ref|YP_006348140.1| - 6.8e-22 77.8 0.7 6.4e-10 38.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|389845901|ref|YP_006348140.1| - 3.3e-21 75.9 0.1 5.7e-21 75.1 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|389845901|ref|YP_006348140.1| - 4.3e-08 32.9 0.0 8.3e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|389845901|ref|YP_006348140.1| - 1.4e-05 24.6 0.0 0.058 12.7 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|389845901|ref|YP_006348140.1| - 0.00012 21.1 0.0 0.003 16.5 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) OCD_Mu_crystall PF02423.15 gi|389845903|ref|YP_006348142.1| - 4.5e-98 328.1 0.1 5.2e-98 327.9 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|389845903|ref|YP_006348142.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cpn60_TCP1 PF00118.24 gi|662859323|ref|YP_006348145.2| - 1.3e-167 558.3 15.1 1.5e-167 558.2 15.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CBM_6 PF03422.15 gi|389845907|ref|YP_006348146.1| - 0.0018 18.6 0.0 0.0024 18.2 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) Ribonuc_L-PSP PF01042.21 gi|389845909|ref|YP_006348148.1| - 4.3e-39 133.3 0.1 4.8e-39 133.1 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|389845909|ref|YP_006348148.1| - 0.0088 16.2 0.1 0.014 15.6 0.1 1.5 1 1 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Cyt_bd_oxida_II PF02322.15 gi|389845911|ref|YP_006348150.1| - 5.2e-71 239.5 34.9 6e-71 239.3 34.9 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Cyt_bd_oxida_I PF01654.17 gi|389845912|ref|YP_006348151.1| - 7.4e-147 489.3 21.9 8.4e-147 489.1 21.9 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I PALP PF00291.25 gi|389845913|ref|YP_006348152.1| - 3.1e-87 292.7 5.9 4e-87 292.3 5.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|389845913|ref|YP_006348152.1| - 1.2e-07 32.3 0.5 4.6e-06 27.1 0.1 2.9 3 0 0 3 3 3 1 ACT domain ACT PF01842.25 gi|389845913|ref|YP_006348152.1| - 0.0095 15.7 0.0 0.041 13.7 0.0 2.2 1 0 0 1 1 1 1 ACT domain Hydrolase_6 PF13344.6 gi|389845913|ref|YP_006348152.1| - 0.03 14.4 0.1 0.21 11.7 0.1 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ACT_6 PF13740.6 gi|389845913|ref|YP_006348152.1| - 0.078 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 ACT domain Citrate_synt PF00285.21 gi|389845915|ref|YP_006348154.1| - 1.1e-124 416.2 0.0 1.3e-124 416.0 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TrkA_C PF02080.21 gi|389845916|ref|YP_006348155.1| - 2.2e-26 91.5 0.3 1e-14 54.1 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|389845916|ref|YP_006348155.1| - 1.8e-19 70.0 7.9 8e-11 42.3 2.2 2.5 2 0 0 2 2 2 2 PhoU domain HALZ PF02183.18 gi|389845916|ref|YP_006348155.1| - 0.014 15.6 0.2 4 7.8 0.1 2.3 2 0 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.15 gi|389845916|ref|YP_006348155.1| - 0.09 12.6 0.9 16 5.4 0.2 2.4 2 0 0 2 2 2 0 Septum formation initiator Dicistro_VP4 PF11492.8 gi|389845916|ref|YP_006348155.1| - 0.33 11.0 1.2 23 5.1 0.2 2.6 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 CLZ PF16526.5 gi|389845916|ref|YP_006348155.1| - 0.42 11.0 2.9 5.2 7.5 0.1 2.7 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Ribosomal_L34 PF00468.17 gi|389845916|ref|YP_006348155.1| - 2.4 8.2 4.9 1.3 9.0 2.7 1.7 2 0 0 2 2 2 0 Ribosomal protein L34 HalX PF08663.10 gi|389845916|ref|YP_006348155.1| - 8.9 6.7 9.8 19 5.7 1.0 3.2 2 1 0 2 2 2 0 HalX domain AstE_AspA PF04952.14 gi|662859324|ref|YP_006348157.2| - 6.7e-59 199.3 0.0 7.7e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.25 gi|389845919|ref|YP_006348158.1| - 2.4e-60 204.4 2.4 2.8e-60 204.2 2.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubredoxin_2 PF18073.1 gi|389845919|ref|YP_006348158.1| - 0.19 11.5 6.9 0.35 10.6 6.9 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain Radical_SAM PF04055.21 gi|389845919|ref|YP_006348158.1| - 0.19 12.1 0.0 0.38 11.1 0.0 1.5 1 0 0 1 1 1 0 Radical SAM superfamily OprD PF03573.13 gi|389845919|ref|YP_006348158.1| - 0.2 10.7 0.0 0.29 10.1 0.0 1.1 1 0 0 1 1 1 0 outer membrane porin, OprD family PCMT PF01135.19 gi|389845921|ref|YP_006348160.1| - 2.8e-37 128.5 0.0 3.6e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|389845921|ref|YP_006348160.1| - 7.7e-08 32.3 0.0 1.1e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389845921|ref|YP_006348160.1| - 9.1e-07 29.5 0.0 1.4e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389845921|ref|YP_006348160.1| - 1.4e-06 28.0 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|389845921|ref|YP_006348160.1| - 1.3e-05 25.0 0.0 2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|389845921|ref|YP_006348160.1| - 0.0017 17.5 0.0 0.0024 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|389845921|ref|YP_006348160.1| - 0.0022 18.7 0.0 0.0036 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389845921|ref|YP_006348160.1| - 0.0022 18.6 0.0 0.0035 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|389845921|ref|YP_006348160.1| - 0.0068 16.3 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|389845921|ref|YP_006348160.1| - 0.0088 15.2 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_32 PF13679.6 gi|389845921|ref|YP_006348160.1| - 0.011 15.8 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|389845921|ref|YP_006348160.1| - 0.036 13.8 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein UPF0020 PF01170.18 gi|389845921|ref|YP_006348160.1| - 0.049 13.3 0.0 0.25 11.0 0.0 1.9 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|389845921|ref|YP_006348160.1| - 0.075 12.4 0.1 0.1 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|389845921|ref|YP_006348160.1| - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|662859325|ref|YP_006348161.2| - 4.3e-05 24.1 0.0 8.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|662859325|ref|YP_006348161.2| - 0.00012 22.0 0.0 0.00066 19.6 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Dimerisation2 PF16864.5 gi|662859325|ref|YP_006348161.2| - 0.00029 20.7 0.0 0.00068 19.6 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_11 PF08241.12 gi|662859325|ref|YP_006348161.2| - 0.00094 19.8 0.0 0.0018 18.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|662859325|ref|YP_006348161.2| - 0.0018 17.6 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain TrmB PF01978.19 gi|662859325|ref|YP_006348161.2| - 0.071 13.0 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Cons_hypoth95 PF03602.15 gi|662859325|ref|YP_006348161.2| - 0.15 11.7 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Zn_Tnp_IS1 PF03811.13 gi|662859326|ref|YP_006348162.2| - 0.0065 16.2 4.1 0.027 14.2 2.7 2.4 2 0 0 2 2 2 1 InsA N-terminal domain zinc_ribbon_4 PF13717.6 gi|662859326|ref|YP_006348162.2| - 1.7 8.7 6.3 14 5.7 6.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PQQ_2 PF13360.6 gi|389845924|ref|YP_006348163.1| - 6.5e-22 78.3 0.4 1.3e-12 47.9 0.0 2.6 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|389845924|ref|YP_006348163.1| - 9.8e-14 50.5 0.5 0.0078 16.1 0.0 6.3 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389845924|ref|YP_006348163.1| - 1.7e-11 44.3 8.5 0.024 15.1 0.1 6.7 8 0 0 8 8 8 3 PQQ-like domain PQQ_2 PF13360.6 gi|389845925|ref|YP_006348164.1| - 2.1e-25 89.7 9.4 6.9e-16 58.5 2.7 3.0 1 1 1 3 3 3 2 PQQ-like domain PQQ PF01011.21 gi|389845925|ref|YP_006348164.1| - 8.3e-20 69.7 4.7 0.0015 18.4 0.0 7.6 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389845925|ref|YP_006348164.1| - 2.9e-18 65.7 38.0 5.5e-05 23.5 0.2 9.9 8 3 1 9 9 9 7 PQQ-like domain nos_propeller_2 PF18793.1 gi|389845925|ref|YP_006348164.1| - 0.11 12.9 0.1 24 5.4 0.0 3.2 3 0 0 3 3 3 0 Nitrous oxide reductase propeller repeat 2 Peptidase_M29 PF02073.15 gi|389845926|ref|YP_006348165.1| - 3.7e-11 42.5 0.2 1e-09 37.7 0.1 2.0 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Paramyxo_P_V_N PF13825.6 gi|389845926|ref|YP_006348165.1| - 0.0034 16.9 0.0 0.0052 16.3 0.0 1.3 1 0 0 1 1 1 1 Paramyxovirus structural protein V/P N-terminus Gp_dh_C PF02800.20 gi|662859327|ref|YP_006348166.2| - 3.1e-17 62.6 0.0 4.6e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|662859327|ref|YP_006348166.2| - 1.2e-10 41.6 0.0 2.5e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|662859327|ref|YP_006348166.2| - 6.1e-05 23.3 0.4 0.00038 20.7 0.0 2.3 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|662859327|ref|YP_006348166.2| - 0.00013 22.6 0.0 0.00032 21.4 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|662859327|ref|YP_006348166.2| - 0.00074 18.9 0.1 0.025 14.0 0.1 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|662859327|ref|YP_006348166.2| - 0.0069 17.2 0.0 0.032 15.1 0.0 2.0 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|662859327|ref|YP_006348166.2| - 0.15 12.3 0.0 0.34 11.2 0.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Metallophos_2 PF12850.7 gi|389845928|ref|YP_006348167.1| - 1e-32 113.6 1.8 1.1e-32 113.5 1.8 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|389845928|ref|YP_006348167.1| - 5.1e-09 36.9 4.8 5e-06 27.2 1.5 2.5 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase PGK PF00162.19 gi|389845929|ref|YP_006348168.1| - 3.8e-103 345.4 0.0 4.3e-103 345.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|389845930|ref|YP_006348169.1| - 5.1e-57 191.9 0.0 6.8e-57 191.5 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|389845930|ref|YP_006348169.1| - 1.7e-32 111.8 0.0 3e-32 111.0 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|389845930|ref|YP_006348169.1| - 0.00082 19.5 0.1 0.0027 17.8 0.0 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus PriA_3primeBD PF17764.1 gi|389845930|ref|YP_006348169.1| - 0.051 13.5 0.0 37 4.3 0.0 3.1 3 0 0 3 3 3 0 3′ DNA-binding domain (3′BD) ADH_zinc_N PF00107.26 gi|389845930|ref|YP_006348169.1| - 0.079 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Semialdhyde_dhC PF02774.18 gi|389845930|ref|YP_006348169.1| - 0.081 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain Myco_19_kDa PF05481.12 gi|389845930|ref|YP_006348169.1| - 0.085 13.1 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen ArsA_HSP20 PF17886.1 gi|389845931|ref|YP_006348170.1| - 5.4e-17 61.1 0.0 2.7e-16 58.9 0.0 1.9 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|389845931|ref|YP_006348170.1| - 8.1e-09 35.6 0.0 2.9e-07 30.5 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|389845931|ref|YP_006348170.1| - 3e-05 24.2 2.2 3.3e-05 24.0 2.2 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|389845931|ref|YP_006348170.1| - 0.038 14.4 0.0 0.047 14.1 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain RimK PF08443.11 gi|662859328|ref|YP_006348171.2| - 3.2e-24 85.6 0.0 4.3e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|662859328|ref|YP_006348171.2| - 2.3e-09 36.9 0.0 3.4e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|662859328|ref|YP_006348171.2| - 2e-07 30.5 0.0 0.063 12.5 0.0 3.1 2 1 1 3 3 3 3 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|662859328|ref|YP_006348171.2| - 2.4e-06 27.7 0.0 3.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|662859328|ref|YP_006348171.2| - 0.0032 17.0 0.0 0.0075 15.8 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|662859328|ref|YP_006348171.2| - 0.006 16.1 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain R2K_3 PF14243.6 gi|662859328|ref|YP_006348171.2| - 0.05 13.6 0.1 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Ins134_P3_kin PF05770.11 gi|662859328|ref|YP_006348171.2| - 0.085 12.4 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain R2K_2 PF18299.1 gi|662859328|ref|YP_006348171.2| - 0.1 12.5 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 Ribosomal_L16 PF00252.18 gi|662859329|ref|YP_006348172.2| - 4.4e-32 110.9 0.0 5e-32 110.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e NucS PF01939.16 gi|662859330|ref|YP_006348173.2| - 3.4e-65 219.6 0.0 4.1e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|662859330|ref|YP_006348173.2| - 0.06 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain HTH_20 PF12840.7 gi|389845936|ref|YP_006348175.1| - 2.3e-09 37.2 0.6 3.3e-09 36.7 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389845936|ref|YP_006348175.1| - 0.006 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389845936|ref|YP_006348175.1| - 0.0096 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FUR PF01475.19 gi|389845936|ref|YP_006348175.1| - 0.013 15.6 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|389845936|ref|YP_006348175.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389845936|ref|YP_006348175.1| - 0.039 13.8 0.2 0.061 13.2 0.2 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|389845936|ref|YP_006348175.1| - 0.046 13.2 0.0 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Zn-ribbon_8 PF09723.10 gi|389845938|ref|YP_006348177.1| - 2.1e-10 40.5 1.5 2.5e-10 40.3 1.5 1.1 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|389845938|ref|YP_006348177.1| - 4.2e-05 23.0 1.5 0.055 13.0 0.2 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding HypA PF01155.19 gi|389845938|ref|YP_006348177.1| - 0.0011 19.0 0.5 0.0013 18.8 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|389845938|ref|YP_006348177.1| - 0.0024 17.4 0.9 0.13 11.9 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|389845938|ref|YP_006348177.1| - 0.0026 17.7 0.4 0.0029 17.6 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2H2_4 PF13894.6 gi|389845938|ref|YP_006348177.1| - 0.0027 18.4 0.9 0.2 12.6 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger DUF2072 PF09845.9 gi|389845938|ref|YP_006348177.1| - 0.0055 17.0 0.6 0.0068 16.7 0.6 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein PknG_rubred PF16919.5 gi|389845938|ref|YP_006348177.1| - 0.0088 16.2 0.5 0.0093 16.1 0.5 1.0 1 0 0 1 1 1 1 Protein kinase G rubredoxin domain zf-ribbon_3 PF13248.6 gi|389845938|ref|YP_006348177.1| - 0.016 14.6 0.8 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|389845938|ref|YP_006348177.1| - 0.016 15.1 1.3 0.04 13.8 1.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|389845938|ref|YP_006348177.1| - 0.021 14.5 3.4 0.6 9.8 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-NADH-PPase PF09297.11 gi|389845938|ref|YP_006348177.1| - 0.029 14.0 1.3 5.6 6.7 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain YhfH PF14149.6 gi|389845938|ref|YP_006348177.1| - 0.032 14.2 0.7 1.5 8.8 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-C2H2 PF00096.26 gi|389845938|ref|YP_006348177.1| - 0.038 14.5 1.4 0.51 10.9 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 gi|389845938|ref|YP_006348177.1| - 0.053 13.5 1.4 0.3 11.1 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_SprT PF17283.2 gi|389845938|ref|YP_006348177.1| - 0.1 12.5 2.2 0.47 10.4 2.2 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-Di19 PF05605.12 gi|389845938|ref|YP_006348177.1| - 0.11 12.8 1.1 3.2 8.1 1.1 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.6 gi|389845938|ref|YP_006348177.1| - 0.12 12.5 1.6 1.6 8.8 0.2 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 gi|389845938|ref|YP_006348177.1| - 0.18 11.5 3.7 1.6 8.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389845939|ref|YP_006348178.1| - 0.0043 16.5 0.4 0.016 14.7 0.1 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|389845939|ref|YP_006348178.1| - 0.017 15.2 0.1 0.023 14.8 0.1 1.1 1 0 0 1 1 1 0 Zinc ribbon domain zf-Di19 PF05605.12 gi|389845939|ref|YP_006348178.1| - 0.023 15.0 1.5 2.4 8.5 1.5 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C3HC4_3 PF13920.6 gi|389845939|ref|YP_006348178.1| - 0.034 14.0 0.4 0.062 13.2 0.4 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf_UBZ PF18439.1 gi|389845939|ref|YP_006348178.1| - 0.057 13.0 0.6 0.098 12.3 0.1 1.7 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Pyridox_ox_2 PF12900.7 gi|662859331|ref|YP_006348179.2| - 4.4e-15 55.9 0.0 4.9e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|662859331|ref|YP_006348179.2| - 5.7e-05 23.2 0.0 7.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HTH_10 PF04967.12 gi|662859332|ref|YP_006348180.2| - 2.2e-19 69.0 0.1 5.3e-19 67.8 0.1 1.6 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|662859332|ref|YP_006348180.2| - 0.0038 16.7 0.0 0.0076 15.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 BAT PF15915.5 gi|662859332|ref|YP_006348180.2| - 0.0042 17.0 0.2 0.042 13.7 0.2 2.1 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_20 PF12840.7 gi|662859332|ref|YP_006348180.2| - 0.011 15.7 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|662859332|ref|YP_006348180.2| - 0.054 13.4 0.1 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|389845942|ref|YP_006348181.1| - 2.3e-09 37.2 0.2 3.7e-09 36.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389845942|ref|YP_006348181.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389845942|ref|YP_006348181.1| - 0.021 14.7 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|389845942|ref|YP_006348181.1| - 0.029 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|389845942|ref|YP_006348181.1| - 0.048 13.6 0.0 0.087 12.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|389845942|ref|YP_006348181.1| - 0.085 12.4 0.0 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TAT_signal PF10518.9 gi|389845943|ref|YP_006348182.1| - 0.022 14.6 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GD_N PF16030.5 gi|389845943|ref|YP_006348182.1| - 0.039 14.2 0.1 0.05 13.9 0.1 1.1 1 0 0 1 1 1 0 Serine protease gd N-terminus Filamin PF00630.19 gi|389845943|ref|YP_006348182.1| - 0.11 13.3 0.2 0.16 12.8 0.1 1.4 2 0 0 2 2 2 0 Filamin/ABP280 repeat DUF2270 PF10028.9 gi|389845944|ref|YP_006348183.1| - 8.7e-74 247.1 2.7 1e-73 246.9 2.7 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) TauE PF01925.19 gi|389845944|ref|YP_006348183.1| - 0.013 15.1 2.3 0.77 9.3 1.1 2.1 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE DUF3054 PF11255.8 gi|389845944|ref|YP_006348183.1| - 0.027 15.0 4.0 0.8 10.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3054) DUF418 PF04235.12 gi|389845944|ref|YP_006348183.1| - 0.036 14.0 2.9 0.13 12.1 0.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF418) Acyl_transf_3 PF01757.22 gi|389845944|ref|YP_006348183.1| - 0.25 10.4 7.2 0.19 10.7 1.6 2.4 2 1 0 2 2 2 0 Acyltransferase family RseC_MucC PF04246.12 gi|389845944|ref|YP_006348183.1| - 5.5 7.0 5.5 4.5 7.2 1.2 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC CSD PF00313.22 gi|389845945|ref|YP_006348184.1| - 1e-20 73.3 0.1 1.1e-20 73.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|389845945|ref|YP_006348184.1| - 0.0094 15.9 0.2 0.012 15.6 0.2 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.11 gi|389845945|ref|YP_006348184.1| - 0.036 13.8 2.7 0.049 13.3 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.22 gi|389845946|ref|YP_006348185.1| - 8.9e-20 70.3 0.1 9.9e-20 70.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|389845946|ref|YP_006348185.1| - 0.037 13.7 2.7 0.049 13.3 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|389845946|ref|YP_006348185.1| - 0.049 13.6 0.2 0.06 13.3 0.2 1.3 1 1 0 1 1 1 0 S1-like Sulfatase PF00884.23 gi|389845947|ref|YP_006348186.1| - 4.9e-35 121.4 0.0 9.9e-35 120.4 0.0 1.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|389845947|ref|YP_006348186.1| - 3.2e-08 33.6 0.6 0.00012 21.8 0.0 2.6 3 0 0 3 3 3 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|389845947|ref|YP_006348186.1| - 0.00012 22.2 0.0 0.00032 20.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF4994 PF16385.5 gi|389845947|ref|YP_006348186.1| - 0.0014 18.5 0.0 0.0097 15.8 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function HTH_53 PF18606.1 gi|389845947|ref|YP_006348186.1| - 0.13 12.0 0.6 0.37 10.5 0.1 1.9 2 0 0 2 2 2 0 Zap helix turn helix N-terminal domain Peptidase_S24 PF00717.23 gi|389845950|ref|YP_006348189.1| - 3.7e-07 30.0 0.2 5.6e-07 29.4 0.2 1.3 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S8 PF00082.22 gi|662859333|ref|YP_006348191.2| - 7e-40 137.1 14.7 7e-40 137.1 14.7 2.4 2 1 0 2 2 2 1 Subtilase family fn3 PF00041.21 gi|662859333|ref|YP_006348191.2| - 0.00014 22.1 3.0 2.7 8.4 0.0 4.1 4 0 0 4 4 4 3 Fibronectin type III domain Inhibitor_I9 PF05922.16 gi|662859333|ref|YP_006348191.2| - 0.025 15.3 0.0 0.075 13.7 0.0 1.8 1 0 0 1 1 1 0 Peptidase inhibitor I9 Tox-GHH PF15636.6 gi|662859333|ref|YP_006348191.2| - 6.2 6.9 5.6 57 3.8 0.1 3.2 3 0 0 3 3 3 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin Peptidase_M73 PF12389.8 gi|389845953|ref|YP_006348192.1| - 0.032 14.1 0.1 0.57 10.0 0.0 2.4 2 0 0 2 2 2 0 Camelysin metallo-endopeptidase TAT_signal PF10518.9 gi|389845953|ref|YP_006348192.1| - 0.079 12.8 5.3 0.18 11.7 5.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence VanZ PF04892.12 gi|389845956|ref|YP_006348195.1| - 3.5e-11 43.8 1.1 4.5e-11 43.5 1.1 1.2 1 0 0 1 1 1 1 VanZ like family DUF192 PF02643.15 gi|389845957|ref|YP_006348196.1| - 1.2e-25 89.4 0.0 1.7e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Pilin_GH PF16734.5 gi|389845958|ref|YP_006348197.1| - 0.039 14.3 0.1 0.041 14.2 0.1 1.0 1 0 0 1 1 1 0 Type IV pilin-like G and H, putative ABC_membrane PF00664.23 gi|389845960|ref|YP_006348199.1| - 8.6e-45 153.5 3.1 1.1e-44 153.1 3.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|389845960|ref|YP_006348199.1| - 1.4e-37 129.3 0.0 2.4e-37 128.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_24 PF13479.6 gi|389845960|ref|YP_006348199.1| - 0.00022 21.0 0.1 0.00039 20.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389845960|ref|YP_006348199.1| - 0.00046 20.1 0.0 0.00084 19.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|389845960|ref|YP_006348199.1| - 0.00073 19.0 0.4 0.022 14.2 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389845960|ref|YP_006348199.1| - 0.00073 19.8 0.1 0.0041 17.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389845960|ref|YP_006348199.1| - 0.00085 19.7 0.2 0.0024 18.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|389845960|ref|YP_006348199.1| - 0.0031 17.2 0.2 0.015 15.0 0.2 2.2 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_membrane_3 PF13748.6 gi|389845960|ref|YP_006348199.1| - 0.004 16.4 1.6 0.37 10.0 0.0 2.2 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_30 PF13604.6 gi|389845960|ref|YP_006348199.1| - 0.0044 16.7 0.2 0.012 15.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|389845960|ref|YP_006348199.1| - 0.0045 16.3 0.0 0.0088 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.6 gi|389845960|ref|YP_006348199.1| - 0.017 15.6 0.0 0.03 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|389845960|ref|YP_006348199.1| - 0.024 14.4 0.0 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|389845960|ref|YP_006348199.1| - 0.04 14.3 0.0 0.24 11.8 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|389845960|ref|YP_006348199.1| - 0.043 14.4 0.0 0.11 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|389845960|ref|YP_006348199.1| - 0.065 12.9 0.0 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 Guanylate kinase AAA_14 PF13173.6 gi|389845960|ref|YP_006348199.1| - 0.11 12.6 0.1 0.31 11.1 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|389845960|ref|YP_006348199.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2107 PF09880.9 gi|389845960|ref|YP_006348199.1| - 0.12 12.5 0.7 0.33 11.1 0.7 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) AAA_15 PF13175.6 gi|389845960|ref|YP_006348199.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|389845960|ref|YP_006348199.1| - 0.13 11.0 1.4 0.12 11.1 0.2 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.15 gi|389845960|ref|YP_006348199.1| - 0.13 12.1 0.1 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 NTPase Spore_IV_A PF09547.10 gi|389845960|ref|YP_006348199.1| - 0.14 11.1 0.0 1.8 7.4 0.0 2.0 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) APS_kinase PF01583.20 gi|389845960|ref|YP_006348199.1| - 0.15 12.0 0.0 0.5 10.2 0.1 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|389845960|ref|YP_006348199.1| - 0.17 11.9 0.1 0.99 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Creatininase PF02633.14 gi|389845961|ref|YP_006348200.1| - 6.7e-70 235.3 1.5 7.6e-70 235.1 1.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF883 PF05957.13 gi|389845962|ref|YP_006348201.1| - 0.0013 19.3 2.6 0.49 11.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF883) T4SS PF07996.11 gi|389845962|ref|YP_006348201.1| - 0.02 15.3 0.1 0.024 15.0 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion system proteins AATF-Che1 PF13339.6 gi|389845962|ref|YP_006348201.1| - 0.023 15.4 1.9 0.036 14.8 0.7 1.8 2 1 0 2 2 2 0 Apoptosis antagonizing transcription factor DUF812 PF05667.11 gi|389845962|ref|YP_006348201.1| - 0.027 13.4 2.3 0.028 13.3 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) T6SS_VipA PF05591.12 gi|389845962|ref|YP_006348201.1| - 0.032 14.0 0.5 0.041 13.7 0.5 1.2 1 0 0 1 1 1 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 Ribosomal_60s PF00428.19 gi|389845962|ref|YP_006348201.1| - 0.04 14.5 10.0 0.04 14.5 10.0 1.9 2 0 0 2 2 2 0 60s Acidic ribosomal protein CorA PF01544.18 gi|389845962|ref|YP_006348201.1| - 0.041 13.2 0.1 0.052 12.9 0.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein BORCS8 PF10167.9 gi|389845962|ref|YP_006348201.1| - 0.079 12.9 0.1 0.15 12.0 0.0 1.4 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 8 Imm7 PF15585.6 gi|389845962|ref|YP_006348201.1| - 0.091 13.1 0.1 0.23 11.7 0.1 1.7 1 1 1 2 2 2 0 Immunity protein 7 FliS PF02561.14 gi|389845962|ref|YP_006348201.1| - 0.11 12.8 1.8 1.5 9.1 0.5 2.7 1 1 1 2 2 2 0 Flagellar protein FliS SUV3_C PF12513.8 gi|389845962|ref|YP_006348201.1| - 0.3 11.0 2.3 6.6 6.7 0.1 2.5 2 0 0 2 2 2 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF4363 PF14276.6 gi|389845962|ref|YP_006348201.1| - 1.8 8.7 9.4 7.6 6.7 1.5 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4363) UPF0149 PF03695.13 gi|389845962|ref|YP_006348201.1| - 2.1 8.6 19.9 0.023 15.0 4.8 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0149) DUF4611 PF15387.6 gi|389845962|ref|YP_006348201.1| - 3.1 8.1 9.8 1.4 9.2 6.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) NUDIX PF00293.28 gi|389845963|ref|YP_006348202.1| - 1.2e-14 54.5 0.1 1.5e-14 54.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DHNA PF04038.12 gi|389845964|ref|YP_006348203.1| - 1.3e-40 138.3 0.0 1.4e-40 138.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Epimerase PF01370.21 gi|389845965|ref|YP_006348204.1| - 2.8e-23 82.6 0.0 3.6e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389845965|ref|YP_006348204.1| - 1.5e-16 60.2 0.0 2e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|389845965|ref|YP_006348204.1| - 2.1e-14 53.4 0.0 1.7e-11 43.8 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|389845965|ref|YP_006348204.1| - 8.7e-12 44.7 0.5 1.2e-11 44.3 0.0 1.4 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|389845965|ref|YP_006348204.1| - 1.5e-11 44.5 0.0 2.4e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|389845965|ref|YP_006348204.1| - 2e-11 43.9 0.0 5e-11 42.6 0.0 1.7 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NmrA PF05368.13 gi|389845965|ref|YP_006348204.1| - 1.4e-07 31.4 0.0 1.8e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|389845965|ref|YP_006348204.1| - 0.00064 18.9 0.0 0.0013 17.9 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 gi|389845965|ref|YP_006348204.1| - 0.8 9.6 2.2 3.8 7.4 2.2 2.1 1 1 0 1 1 1 0 KR domain Spc7_N PF15402.6 gi|389845966|ref|YP_006348205.1| - 0.82 7.8 5.5 0.75 8.0 5.5 1.0 1 0 0 1 1 1 0 N-terminus of kinetochore NMS complex subunit Spc7 Hamartin PF04388.12 gi|389845966|ref|YP_006348205.1| - 9.4 4.8 8.2 11 4.5 8.2 1.0 1 0 0 1 1 1 0 Hamartin protein DUF309 PF03745.14 gi|389845967|ref|YP_006348206.1| - 9.5e-16 57.2 0.4 1.6e-15 56.5 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Cytochrome_CBB3 PF13442.6 gi|662859334|ref|YP_006348207.2| - 0.03 14.6 0.1 0.044 14.1 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III FYVE_2 PF02318.16 gi|662859334|ref|YP_006348207.2| - 0.075 13.2 0.1 0.084 13.1 0.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-TFIIB PF13453.6 gi|662859334|ref|YP_006348207.2| - 0.1 12.0 2.2 0.16 11.3 2.2 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger PQQ_3 PF13570.6 gi|389845969|ref|YP_006348208.1| - 1.5e-27 95.3 13.4 1.9e-05 25.0 0.3 7.8 7 1 1 8 8 8 7 PQQ-like domain PQQ_2 PF13360.6 gi|389845969|ref|YP_006348208.1| - 1.9e-27 96.4 4.7 1.9e-20 73.5 0.6 3.4 1 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|389845969|ref|YP_006348208.1| - 1.6e-09 37.3 17.4 0.0029 17.5 0.0 7.0 10 0 0 10 10 10 3 PQQ enzyme repeat DUF3558 PF12079.8 gi|389845970|ref|YP_006348209.1| - 0.057 13.4 10.0 0.077 13.0 10.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3558) TAT_signal PF10518.9 gi|389845970|ref|YP_006348209.1| - 0.077 12.9 2.1 0.077 12.9 2.1 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence tRNA_anti-codon PF01336.25 gi|389845971|ref|YP_006348210.1| - 6.1e-28 96.6 12.1 1.2e-12 47.7 0.3 4.0 3 1 1 4 4 4 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|389845971|ref|YP_006348210.1| - 6.9e-14 52.1 0.2 0.0005 19.9 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|389845971|ref|YP_006348210.1| - 5.5e-09 35.8 3.8 0.00016 21.5 1.0 3.3 3 0 0 3 3 3 3 Replication protein A OB domain SSB PF00436.25 gi|389845971|ref|YP_006348210.1| - 0.00057 19.9 0.2 0.39 10.8 0.1 3.1 3 0 0 3 3 3 2 Single-strand binding protein family DUF4539 PF15072.6 gi|389845971|ref|YP_006348210.1| - 0.0045 17.0 0.9 0.45 10.6 0.0 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4539) tRNA_anti_2 PF13742.6 gi|389845971|ref|YP_006348210.1| - 0.057 13.6 0.0 16 5.8 0.0 3.0 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|389845971|ref|YP_006348210.1| - 0.071 12.9 0.0 39 4.0 0.0 3.1 3 0 0 3 3 3 0 Replication factor-A C terminal domain CBFD_NFYB_HMF PF00808.23 gi|662859335|ref|YP_006348211.2| - 5.6e-25 87.4 0.3 3.4e-14 52.9 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|662859335|ref|YP_006348211.2| - 4e-12 46.6 1.0 2.1e-07 31.4 0.2 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|662859335|ref|YP_006348211.2| - 7.6e-05 22.8 0.2 0.0035 17.4 0.1 2.0 2 0 0 2 2 2 1 Centromere kinetochore component CENP-T histone fold TFIID_20kDa PF03847.13 gi|662859335|ref|YP_006348211.2| - 0.0032 17.9 0.1 0.0066 16.9 0.1 1.5 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|662859335|ref|YP_006348211.2| - 0.025 14.6 0.1 0.15 12.1 0.0 2.0 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|662859335|ref|YP_006348211.2| - 0.036 14.2 1.3 0.32 11.1 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) CENP-S PF15630.6 gi|662859335|ref|YP_006348211.2| - 0.074 13.4 0.2 0.074 13.4 0.2 1.9 2 1 0 2 2 2 0 CENP-S protein TAF PF02969.17 gi|662859335|ref|YP_006348211.2| - 0.085 13.0 1.0 0.43 10.8 0.2 2.2 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) Hist_deacetyl PF00850.19 gi|389845973|ref|YP_006348212.1| - 2.8e-81 273.3 0.0 3.9e-81 272.9 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Lipase_GDSL_2 PF13472.6 gi|389845973|ref|YP_006348212.1| - 0.016 15.6 0.0 2.8 8.3 0.0 2.6 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family tRNA_NucTransf2 PF09249.11 gi|389845974|ref|YP_006348213.1| - 1.1e-42 144.8 0.0 2.4e-42 143.7 0.0 1.6 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|389845974|ref|YP_006348213.1| - 1.3e-13 51.0 0.0 2.5e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|389845974|ref|YP_006348213.1| - 0.04 14.1 0.0 0.26 11.5 0.0 2.1 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain UPF0180 PF03698.13 gi|389845974|ref|YP_006348213.1| - 0.068 13.3 0.0 7.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) EccE PF11203.8 gi|389845974|ref|YP_006348213.1| - 1.1 9.7 4.5 1.2 9.5 1.2 2.7 3 0 0 3 3 3 0 Putative type VII ESX secretion system translocon, EccE YndJ PF14158.6 gi|389845975|ref|YP_006348214.1| - 1e-57 195.4 24.5 1.5e-57 194.9 24.5 1.2 1 0 0 1 1 1 1 YndJ-like protein Porin_OmpL1 PF11389.8 gi|389845975|ref|YP_006348214.1| - 0.013 14.7 0.0 0.027 13.7 0.0 1.5 1 0 0 1 1 1 0 Leptospira porin protein OmpL1 DUF4166 PF13761.6 gi|389845976|ref|YP_006348215.1| - 2.6e-36 125.1 0.1 2.9e-36 125.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) KH_4 PF13083.6 gi|389845976|ref|YP_006348215.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 KH domain DoxX_3 PF13781.6 gi|389845977|ref|YP_006348216.1| - 1.8e-16 60.6 11.0 2.6e-16 60.1 11.0 1.3 1 0 0 1 1 1 1 DoxX-like family Polyketide_cyc2 PF10604.9 gi|389845977|ref|YP_006348216.1| - 0.019 15.3 2.0 0.033 14.4 2.0 1.4 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DUF417 PF04224.12 gi|389845977|ref|YP_006348216.1| - 0.065 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF417 DsbD PF02683.15 gi|389845978|ref|YP_006348217.1| - 1.2e-17 64.6 12.8 1.4e-17 64.3 12.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MARVEL PF01284.23 gi|389845978|ref|YP_006348217.1| - 1.8 8.6 16.4 0.41 10.7 10.6 2.6 2 1 0 2 2 2 0 Membrane-associating domain Redoxin PF08534.10 gi|389845979|ref|YP_006348218.1| - 4.4e-14 52.4 0.0 5.4e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|389845979|ref|YP_006348218.1| - 9e-07 29.1 0.0 1.4e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.21 gi|389845979|ref|YP_006348218.1| - 2.4e-06 27.5 0.0 2.9e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 gi|389845979|ref|YP_006348218.1| - 6.9e-05 22.8 0.0 0.00046 20.1 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin TraF PF13728.6 gi|389845979|ref|YP_006348218.1| - 0.032 14.0 0.0 0.4 10.5 0.0 2.0 1 1 0 1 1 1 0 F plasmid transfer operon protein SCO1-SenC PF02630.14 gi|389845979|ref|YP_006348218.1| - 0.052 13.5 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Thioredoxin_2 PF13098.6 gi|389845979|ref|YP_006348218.1| - 0.21 12.1 0.0 0.33 11.4 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain SCO1-SenC PF02630.14 gi|389845980|ref|YP_006348219.1| - 1.1e-13 51.3 0.0 2e-13 50.4 0.0 1.4 1 1 0 1 1 1 1 SCO1/SenC Redoxin PF08534.10 gi|389845980|ref|YP_006348219.1| - 0.096 12.4 0.0 4.9 6.9 0.0 2.1 2 0 0 2 2 2 0 Redoxin Copper-bind PF00127.20 gi|389845981|ref|YP_006348220.1| - 0.00074 19.9 0.0 0.0014 19.0 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_3 PF07732.15 gi|389845982|ref|YP_006348221.1| - 2.7e-20 72.5 0.4 1.1e-19 70.6 0.0 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|389845982|ref|YP_006348221.1| - 1.6e-09 37.6 6.7 4.9e-05 23.1 0.7 3.2 2 1 0 2 2 2 2 Multicopper oxidase Zip PF02535.22 gi|389845983|ref|YP_006348222.1| - 2.4e-05 23.7 10.1 2.4e-05 23.7 10.1 2.9 1 1 0 2 2 2 2 ZIP Zinc transporter Copper-bind PF00127.20 gi|389845984|ref|YP_006348223.1| - 2e-17 63.5 0.0 3.1e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389845984|ref|YP_006348223.1| - 8e-05 22.7 0.0 0.0025 17.9 0.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain Glycos_transf_2 PF00535.26 gi|389845985|ref|YP_006348224.1| - 5.6e-14 52.3 0.2 1e-08 35.2 0.0 2.3 1 1 1 2 2 2 2 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|389845985|ref|YP_006348224.1| - 1.4e-05 24.7 0.0 0.0071 15.8 0.0 2.2 1 1 1 2 2 2 2 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|389845985|ref|YP_006348224.1| - 2e-05 24.6 0.7 0.14 12.0 0.2 2.2 1 1 1 2 2 2 2 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.14 gi|389845985|ref|YP_006348224.1| - 5.7e-05 22.7 0.3 0.00011 21.8 0.3 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_3 PF13641.6 gi|389845985|ref|YP_006348224.1| - 0.025 14.5 0.4 0.075 12.9 0.4 1.9 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|389845985|ref|YP_006348224.1| - 0.21 11.0 0.2 4.6 6.6 0.0 2.3 2 1 0 2 2 2 0 Glycosyltransferase like family 2 Aconitase PF00330.20 gi|389845986|ref|YP_006348225.1| - 2.9e-170 567.2 0.0 3.8e-170 566.9 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|389845986|ref|YP_006348225.1| - 1.6e-40 138.4 0.0 3.1e-40 137.5 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain RtcB PF01139.17 gi|389845988|ref|YP_006348227.1| - 1.4e-138 462.5 0.0 1.6e-138 462.3 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF836 PF05768.14 gi|389845990|ref|YP_006348229.1| - 8.7e-15 54.9 0.0 9.7e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|389845990|ref|YP_006348229.1| - 1.2e-08 35.0 0.1 2.1e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|389845990|ref|YP_006348229.1| - 3.9e-06 26.8 0.0 4.5e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain DUF953 PF06110.11 gi|389845990|ref|YP_006348229.1| - 0.0049 16.5 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) Redoxin PF08534.10 gi|389845990|ref|YP_006348229.1| - 0.04 13.6 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Redoxin DUF2225 PF09986.9 gi|389845990|ref|YP_006348229.1| - 0.053 13.2 0.0 0.064 13.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Thioredoxin_2 PF13098.6 gi|389845990|ref|YP_006348229.1| - 0.085 13.3 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|389845990|ref|YP_006348229.1| - 0.11 12.6 0.0 0.34 11.0 0.1 1.7 1 1 1 2 2 2 0 Thioredoxin Phage_TAC_5 PF08890.11 gi|389845990|ref|YP_006348229.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Phage XkdN-like tail assembly chaperone protein, TAC TraF PF13728.6 gi|389845990|ref|YP_006348229.1| - 0.2 11.4 0.0 0.97 9.2 0.0 1.9 1 1 0 1 1 1 0 F plasmid transfer operon protein Sugar_tr PF00083.24 gi|389845991|ref|YP_006348230.1| - 3.8e-128 428.2 22.7 4.5e-128 427.9 22.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|389845991|ref|YP_006348230.1| - 2e-43 148.7 76.5 1.3e-35 123.0 41.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|389845991|ref|YP_006348230.1| - 9.9e-08 30.9 2.1 9.9e-08 30.9 2.1 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.6 gi|389845991|ref|YP_006348230.1| - 5e-06 25.3 37.7 0.0023 16.6 5.8 4.0 3 1 1 4 4 4 4 MFS/sugar transport protein OATP PF03137.20 gi|389845991|ref|YP_006348230.1| - 0.0049 15.2 5.4 0.17 10.2 0.2 3.0 1 1 1 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family Rick_17kDa_Anti PF05433.15 gi|389845991|ref|YP_006348230.1| - 0.0075 16.1 5.1 0.034 14.0 5.1 2.2 1 0 0 1 1 1 1 Glycine zipper 2TM domain FliT PF05400.13 gi|389845991|ref|YP_006348230.1| - 0.063 14.1 0.3 0.11 13.3 0.3 1.3 1 0 0 1 1 1 0 Flagellar protein FliT Gly-zipper_Omp PF13488.6 gi|389845991|ref|YP_006348230.1| - 0.28 11.2 8.6 1.6 8.8 8.6 2.4 1 1 0 1 1 1 0 Glycine zipper Dexa_ind PF15198.6 gi|389845991|ref|YP_006348230.1| - 1.8 8.7 0.0 1.8 8.7 0.0 3.3 4 0 0 4 4 4 0 Dexamethasone-induced Halogen_Hydrol PF10112.9 gi|389845991|ref|YP_006348230.1| - 2.8 7.9 0.0 2.8 7.9 0.0 3.9 4 2 0 4 4 4 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein NikR_C PF08753.11 gi|389845992|ref|YP_006348231.1| - 4.2e-21 74.9 0.4 6.8e-21 74.2 0.4 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|389845992|ref|YP_006348231.1| - 5.5e-08 32.5 0.0 9.3e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|389845992|ref|YP_006348231.1| - 0.013 15.7 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system 2-Hacid_dh_C PF02826.19 gi|389845994|ref|YP_006348233.1| - 3.4e-55 186.1 0.0 6.8e-55 185.2 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|389845994|ref|YP_006348233.1| - 9.9e-26 90.0 0.4 1.1e-25 89.8 0.4 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DUF4440 PF14534.6 gi|389845994|ref|YP_006348233.1| - 0.095 13.1 0.1 0.39 11.1 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Na_H_antiporter PF03553.14 gi|389845996|ref|YP_006348235.1| - 1.2e-57 195.4 44.1 8e-50 169.8 22.9 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family DUF2909 PF11137.8 gi|389845996|ref|YP_006348235.1| - 0.96 9.4 8.6 0.41 10.6 0.5 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2909) PfkB PF00294.24 gi|389845997|ref|YP_006348236.1| - 3.3e-60 203.9 1.0 4e-60 203.7 1.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF4376 PF14301.6 gi|389845998|ref|YP_006348237.1| - 0.018 15.4 0.0 0.028 14.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4376) FAD_binding_2 PF00890.24 gi|389845998|ref|YP_006348237.1| - 0.057 12.5 0.1 0.064 12.3 0.1 1.0 1 0 0 1 1 1 0 FAD binding domain MutL_C PF08676.11 gi|389845999|ref|YP_006348238.1| - 1.2e-36 125.7 0.0 1.8e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|389845999|ref|YP_006348238.1| - 1.3e-35 121.6 0.0 2.1e-35 121.0 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|389845999|ref|YP_006348238.1| - 1.9e-11 43.9 0.1 4.3e-11 42.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|389845999|ref|YP_006348238.1| - 1.1e-05 25.9 0.2 0.00011 22.7 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPX PF03105.19 gi|389845999|ref|YP_006348238.1| - 1.2 8.9 15.8 6 6.7 16.7 1.8 2 0 0 2 2 2 0 SPX domain MutS_V PF00488.21 gi|389846000|ref|YP_006348239.1| - 3.8e-86 287.9 0.0 6.8e-86 287.1 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|389846000|ref|YP_006348239.1| - 1.2e-37 130.1 1.9 2.3e-37 129.1 1.9 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|389846000|ref|YP_006348239.1| - 1.2e-27 96.4 0.0 2.3e-27 95.5 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|389846000|ref|YP_006348239.1| - 2.6e-24 85.4 0.7 5.6e-24 84.3 0.7 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|389846000|ref|YP_006348239.1| - 1.4e-21 77.2 0.0 3.6e-21 75.9 0.0 1.7 1 0 0 1 1 1 1 MutS domain II Lactococcin PF04369.13 gi|389846000|ref|YP_006348239.1| - 0.047 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Lactococcin-like family AAA_27 PF13514.6 gi|389846000|ref|YP_006348239.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389846000|ref|YP_006348239.1| - 0.068 12.9 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|389846000|ref|YP_006348239.1| - 0.089 12.8 0.0 0.38 10.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|389846000|ref|YP_006348239.1| - 0.14 12.6 0.6 3.3 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain APG6_N PF17675.1 gi|389846000|ref|YP_006348239.1| - 0.22 12.0 3.3 0.69 10.4 3.3 1.8 1 0 0 1 1 1 0 Apg6 coiled-coil region Peripla_BP_6 PF13458.6 gi|662859336|ref|YP_006348240.2| - 1.7e-37 129.9 10.1 2.2e-37 129.5 10.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|662859336|ref|YP_006348240.2| - 7.1e-22 78.0 0.0 9.6e-22 77.6 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|662859336|ref|YP_006348240.2| - 2.1e-07 30.2 0.2 8e-07 28.4 0.1 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|662859336|ref|YP_006348240.2| - 8.6 6.4 9.5 0.075 12.9 1.0 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.21 gi|662859337|ref|YP_006348241.2| - 2e-45 154.7 23.9 2e-45 154.7 23.9 4.2 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|662859337|ref|YP_006348241.2| - 7.2e-12 45.6 0.2 7.2e-12 45.6 0.2 4.5 3 1 2 5 5 5 1 Cache domain HAMP PF00672.25 gi|662859337|ref|YP_006348241.2| - 6.7e-08 32.8 16.7 7.9e-05 23.0 0.1 5.5 5 1 1 6 6 5 2 HAMP domain DUF948 PF06103.11 gi|662859337|ref|YP_006348241.2| - 0.0038 17.4 42.1 0.072 13.3 4.0 7.1 3 2 3 6 6 6 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|662859337|ref|YP_006348241.2| - 0.03 14.6 31.6 0.66 10.3 5.4 6.3 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Bacillus_HBL PF05791.11 gi|662859337|ref|YP_006348241.2| - 0.16 11.8 9.7 0.24 11.2 2.9 3.3 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF3584 PF12128.8 gi|662859337|ref|YP_006348241.2| - 0.21 9.1 37.2 0.059 10.9 8.3 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) Prominin PF05478.11 gi|662859337|ref|YP_006348241.2| - 0.29 9.1 19.5 0.15 10.0 6.6 3.1 2 1 1 3 3 3 0 Prominin Laminin_II PF06009.12 gi|662859337|ref|YP_006348241.2| - 0.35 10.9 38.3 0.1 12.6 7.7 4.9 2 2 2 4 4 4 0 Laminin Domain II NPV_P10 PF05531.12 gi|662859337|ref|YP_006348241.2| - 0.47 11.0 19.7 0.038 14.5 1.8 5.0 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|662859337|ref|YP_006348241.2| - 0.56 10.3 32.0 1.8 8.6 4.0 5.5 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) PRK PF00485.18 gi|662859337|ref|YP_006348241.2| - 0.84 9.3 5.7 0.12 12.1 1.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Vps54_N PF10475.9 gi|662859337|ref|YP_006348241.2| - 1.3 8.2 9.5 0.25 10.6 0.5 2.6 2 1 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex KxDL PF10241.9 gi|662859337|ref|YP_006348241.2| - 1.4 9.2 18.6 4 7.8 0.1 5.6 3 2 3 6 6 5 0 Uncharacterized conserved protein Syntaxin-6_N PF09177.11 gi|662859337|ref|YP_006348241.2| - 2 9.0 31.8 6.6 7.4 2.5 5.5 2 2 3 5 5 5 0 Syntaxin 6, N-terminal UPF0242 PF06785.11 gi|662859337|ref|YP_006348241.2| - 3.4 7.7 22.5 0.61 10.2 6.7 3.5 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Hom_end_hint PF05203.16 gi|662859337|ref|YP_006348241.2| - 3.7 7.4 8.9 0.4 10.6 2.4 2.2 2 0 0 2 2 2 0 Hom_end-associated Hint Syntaxin_2 PF14523.6 gi|662859337|ref|YP_006348241.2| - 5.4 7.5 15.8 3.6 8.0 0.4 4.6 1 1 4 5 5 5 0 Syntaxin-like protein SesA PF17107.5 gi|662859337|ref|YP_006348241.2| - 8.6 6.6 22.0 2.2 8.5 6.6 4.2 1 1 3 4 4 4 0 N-terminal domain on NACHT_NTPase and P-loop NTPases MCPsignal PF00015.21 gi|389846003|ref|YP_006348242.1| - 9.2e-39 133.0 49.8 2.4e-37 128.4 29.5 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|389846003|ref|YP_006348242.1| - 7e-09 35.7 0.1 8.5e-08 32.2 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|389846003|ref|YP_006348242.1| - 2.2e-08 34.3 0.0 1e-07 32.2 0.0 2.2 2 1 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|389846003|ref|YP_006348242.1| - 8.7e-08 32.4 7.2 2.5e-07 30.9 0.5 4.1 3 2 0 3 3 3 1 PAS fold DUF3450 PF11932.8 gi|389846003|ref|YP_006348242.1| - 0.0043 16.4 5.5 0.0043 16.4 5.5 3.5 1 1 1 3 3 3 2 Protein of unknown function (DUF3450) GAF PF01590.26 gi|389846003|ref|YP_006348242.1| - 0.0057 17.3 0.2 0.061 13.9 0.0 2.5 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|389846003|ref|YP_006348242.1| - 0.0071 16.3 0.0 0.021 14.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain EzrA PF06160.12 gi|389846003|ref|YP_006348242.1| - 0.045 11.9 19.7 0.1 10.8 18.7 1.9 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA NUDIX-like PF09296.11 gi|389846003|ref|YP_006348242.1| - 0.071 13.8 2.5 1.9 9.2 1.1 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase-like rudimentary NUDIX domain Spc7 PF08317.11 gi|389846003|ref|YP_006348242.1| - 0.078 11.9 28.5 0.081 11.8 9.8 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF713 PF05218.14 gi|389846003|ref|YP_006348242.1| - 0.11 12.2 1.2 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF713) Kre28 PF17097.5 gi|389846003|ref|YP_006348242.1| - 0.26 10.2 22.4 0.85 8.5 17.2 2.9 1 1 1 2 2 2 0 Spindle pole body component Sec5 PF15469.6 gi|389846003|ref|YP_006348242.1| - 0.3 10.9 9.7 7.4 6.3 0.1 3.2 1 1 2 3 3 3 0 Exocyst complex component Sec5 DUF489 PF04356.12 gi|389846003|ref|YP_006348242.1| - 0.39 10.7 14.5 0.53 10.3 1.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF489) DUF948 PF06103.11 gi|389846003|ref|YP_006348242.1| - 0.83 9.9 40.0 0.74 10.1 3.6 5.7 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) PAS_7 PF12860.7 gi|389846003|ref|YP_006348242.1| - 0.95 9.6 9.3 1.5 9.0 0.0 4.2 3 3 0 3 3 3 0 PAS fold ATG16 PF08614.11 gi|389846003|ref|YP_006348242.1| - 1.2 9.4 31.7 0.086 13.1 11.4 2.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) UPF0242 PF06785.11 gi|389846003|ref|YP_006348242.1| - 1.4 9.0 15.2 4.9 7.2 3.9 2.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF1664 PF07889.12 gi|389846003|ref|YP_006348242.1| - 3.3 7.8 26.6 2.6 8.1 4.6 4.4 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|389846003|ref|YP_006348242.1| - 3.8 7.5 37.9 2.8 8.0 6.4 4.6 1 1 3 4 4 4 0 Laminin Domain II Peptidase_M3_N PF08439.10 gi|389846003|ref|YP_006348242.1| - 3.9 7.8 6.2 42 4.5 0.5 3.4 3 0 0 3 3 3 0 Oligopeptidase F Prominin PF05478.11 gi|389846003|ref|YP_006348242.1| - 4.3 5.2 16.7 0.45 8.4 4.3 2.2 1 1 0 2 2 2 0 Prominin Sec34 PF04136.15 gi|389846003|ref|YP_006348242.1| - 5.2 6.9 17.7 3.4 7.5 0.2 4.5 2 2 1 4 4 4 0 Sec34-like family Fzo_mitofusin PF04799.13 gi|389846003|ref|YP_006348242.1| - 5.9 6.4 15.9 0.063 12.8 0.6 3.7 2 2 1 4 4 4 0 fzo-like conserved region DUF745 PF05335.13 gi|389846003|ref|YP_006348242.1| - 7 6.3 48.0 0.53 10.0 13.6 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF745) FUSC PF04632.12 gi|389846003|ref|YP_006348242.1| - 8 4.9 30.3 4.2 5.8 10.7 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family SKA1 PF07160.12 gi|389846003|ref|YP_006348242.1| - 9.1 6.0 16.9 3.4 7.5 2.9 2.5 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 TMP_2 PF06791.13 gi|389846003|ref|YP_006348242.1| - 9.9 5.8 39.0 1.7 8.3 13.1 3.4 1 1 3 4 4 4 0 Prophage tail length tape measure protein ThiF PF00899.21 gi|389846004|ref|YP_006348243.1| - 2e-69 233.7 0.0 2.5e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|389846004|ref|YP_006348243.1| - 0.00011 22.4 0.3 0.00026 21.3 0.3 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|389846004|ref|YP_006348243.1| - 0.0047 17.0 0.2 0.017 15.2 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|389846004|ref|YP_006348243.1| - 0.022 15.2 0.1 0.037 14.5 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|389846004|ref|YP_006348243.1| - 0.055 13.0 0.1 0.089 12.4 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|389846004|ref|YP_006348243.1| - 0.47 9.7 4.4 0.067 12.5 0.4 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Rhodanese PF00581.20 gi|389846005|ref|YP_006348244.1| - 5.8e-12 46.1 0.0 9e-12 45.5 0.0 1.3 1 1 0 1 1 1 1 Rhodanese-like domain Ribosomal_L15e PF00827.17 gi|389846006|ref|YP_006348245.1| - 2.9e-81 271.8 7.2 3.3e-81 271.6 7.2 1.0 1 0 0 1 1 1 1 Ribosomal L15 Esterase PF00756.20 gi|389846007|ref|YP_006348246.1| - 8.7e-35 120.6 0.0 1e-34 120.3 0.0 1.0 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|389846007|ref|YP_006348246.1| - 0.00075 18.8 0.0 0.0022 17.3 0.0 1.7 1 1 1 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|389846007|ref|YP_006348246.1| - 0.017 14.8 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Alpha-amylase PF00128.24 gi|389846008|ref|YP_006348247.1| - 2.7e-48 165.3 0.0 3.7e-48 164.8 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|389846008|ref|YP_006348247.1| - 2.2e-11 43.9 0.0 6.5e-11 42.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|389846008|ref|YP_006348247.1| - 4.3e-06 26.7 0.1 1.3e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 Maltogenic Amylase, C-terminal domain Alpha-amylase_C PF02806.18 gi|389846008|ref|YP_006348247.1| - 0.0088 16.5 0.0 0.094 13.2 0.0 2.6 2 1 1 3 3 3 1 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.6 gi|389846008|ref|YP_006348247.1| - 0.014 14.5 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain Glyco_hydro_42C PF08533.10 gi|389846008|ref|YP_006348247.1| - 0.05 13.3 0.0 0.37 10.5 0.0 2.5 3 0 0 3 3 3 0 Beta-galactosidase C-terminal domain zf-LITAF-like PF10601.9 gi|389846009|ref|YP_006348248.1| - 3.4e-05 24.0 4.6 0.67 10.3 0.1 4.1 4 0 0 4 4 4 1 LITAF-like zinc ribbon domain DZR PF12773.7 gi|389846009|ref|YP_006348248.1| - 0.00021 21.2 4.3 0.02 14.9 0.8 2.4 2 0 0 2 2 2 2 Double zinc ribbon Lar_restr_allev PF14354.6 gi|389846009|ref|YP_006348248.1| - 0.0024 18.2 2.8 0.2 12.0 0.2 2.4 2 0 0 2 2 2 1 Restriction alleviation protein Lar Elf1 PF05129.13 gi|389846009|ref|YP_006348248.1| - 0.025 14.6 0.1 3.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Cys_rich_CPXG PF14255.6 gi|389846009|ref|YP_006348248.1| - 0.035 14.0 7.5 0.067 13.1 0.2 3.2 3 0 0 3 3 2 0 Cysteine-rich CPXCG Nudix_N_2 PF14803.6 gi|389846009|ref|YP_006348248.1| - 0.047 13.6 3.0 0.047 13.6 3.0 3.9 4 0 0 4 4 4 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|389846009|ref|YP_006348248.1| - 0.049 13.1 7.9 0.12 11.9 0.8 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding HypA PF01155.19 gi|389846009|ref|YP_006348248.1| - 0.056 13.5 4.7 0.24 11.4 0.3 2.7 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|389846009|ref|YP_006348248.1| - 0.059 13.3 1.5 2.6 8.0 0.4 2.6 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4_Topoisom PF01396.19 gi|389846009|ref|YP_006348248.1| - 0.084 12.7 6.8 1.4 8.7 1.2 3.6 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-Mss51 PF13824.6 gi|389846009|ref|YP_006348248.1| - 0.085 13.0 10.4 0.09 12.9 2.5 2.6 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-piccolo PF05715.13 gi|389846009|ref|YP_006348248.1| - 0.13 12.4 2.1 7.6 6.8 0.4 2.3 2 0 0 2 2 2 0 Piccolo Zn-finger CARDB PF07705.11 gi|389846009|ref|YP_006348248.1| - 0.14 12.4 0.1 0.31 11.3 0.1 1.5 1 0 0 1 1 1 0 CARDB DUF4796 PF16044.5 gi|389846009|ref|YP_006348248.1| - 0.15 11.7 1.6 19 4.8 0.5 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4796) HTH_20 PF12840.7 gi|389846009|ref|YP_006348248.1| - 0.15 12.2 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain zinc-ribbons_6 PF07191.12 gi|389846009|ref|YP_006348248.1| - 0.21 11.6 4.7 0.92 9.5 0.4 2.6 2 1 0 2 2 2 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|389846009|ref|YP_006348248.1| - 0.27 11.3 12.6 2.2 8.3 2.7 3.0 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-IS66 PF13005.7 gi|389846009|ref|YP_006348248.1| - 0.43 11.0 9.8 17 5.9 0.1 4.1 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 TackOD1 PF18551.1 gi|389846009|ref|YP_006348248.1| - 0.59 9.8 4.9 0.52 10.0 0.4 2.3 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 RNHCP PF12647.7 gi|389846009|ref|YP_006348248.1| - 0.82 9.7 5.0 3.8 7.5 0.7 2.3 1 1 1 2 2 2 0 RNHCP domain Zn-ribbon_8 PF09723.10 gi|389846009|ref|YP_006348248.1| - 0.82 9.8 12.7 0.25 11.5 2.3 3.4 2 2 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|389846009|ref|YP_006348248.1| - 0.84 9.6 4.3 3.1 7.7 1.0 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ogr_Delta PF04606.12 gi|389846009|ref|YP_006348248.1| - 1 9.4 12.7 2.5 8.2 1.7 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DnaJ_CXXCXGXG PF00684.19 gi|389846009|ref|YP_006348248.1| - 1.9 8.9 4.8 4.8 7.6 0.1 2.5 2 1 0 2 2 2 0 DnaJ central domain zf-ribbon_3 PF13248.6 gi|389846009|ref|YP_006348248.1| - 2.3 7.8 10.0 2.2 7.8 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|389846009|ref|YP_006348248.1| - 4 7.5 9.4 0.21 11.5 0.7 2.8 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 CpXC PF14353.6 gi|389846009|ref|YP_006348248.1| - 4 7.5 6.3 20 5.2 0.2 3.6 3 1 1 4 4 4 0 CpXC protein DUF1272 PF06906.11 gi|389846009|ref|YP_006348248.1| - 4.2 7.5 9.8 13 6.0 0.1 3.5 3 1 1 4 4 3 0 Protein of unknown function (DUF1272) OrfB_Zn_ribbon PF07282.11 gi|389846009|ref|YP_006348248.1| - 4.9 7.2 7.5 0.61 10.0 0.8 2.5 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|389846009|ref|YP_006348248.1| - 6 7.0 10.1 38 4.5 0.1 3.9 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|389846009|ref|YP_006348248.1| - 8.1 6.5 7.3 13 5.8 0.1 3.2 4 0 0 4 4 3 0 zinc-ribbon domain Alpha-amylase PF00128.24 gi|389846010|ref|YP_006348249.1| - 2.2e-65 221.4 3.7 3.4e-65 220.8 3.7 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.19 gi|389846010|ref|YP_006348249.1| - 9.3e-30 102.4 0.3 1.9e-29 101.4 0.3 1.5 1 0 0 1 1 1 1 Starch binding domain TIG PF01833.24 gi|389846010|ref|YP_006348249.1| - 1.3e-08 34.8 0.8 3e-08 33.6 0.8 1.7 1 0 0 1 1 1 1 IPT/TIG domain Alpha-amylase_C PF02806.18 gi|389846010|ref|YP_006348249.1| - 7.5e-07 29.5 2.8 1.3e-06 28.8 0.1 2.7 3 0 0 3 3 3 1 Alpha amylase, C-terminal all-beta domain Malt_amylase_C PF16657.5 gi|389846010|ref|YP_006348249.1| - 0.028 14.5 0.0 0.075 13.2 0.0 1.7 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain TAT_signal PF10518.9 gi|389846010|ref|YP_006348249.1| - 9 6.3 9.0 0.1 12.5 1.6 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|662859338|ref|YP_006348250.2| - 2.8e-15 56.6 16.3 2.8e-15 56.6 16.3 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389846012|ref|YP_006348251.1| - 4.7e-16 59.0 15.1 4.7e-16 59.0 15.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|389846013|ref|YP_006348252.1| - 6.1e-37 128.0 4.0 8.5e-37 127.5 4.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389846013|ref|YP_006348252.1| - 7.7e-22 78.6 8.8 7.7e-22 78.6 8.8 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389846013|ref|YP_006348252.1| - 0.00077 19.2 1.7 0.0017 18.1 1.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|662859339|ref|YP_006348253.2| - 6e-32 111.0 0.0 1e-31 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|662859339|ref|YP_006348253.2| - 9e-10 39.2 0.0 3.4e-09 37.4 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|662859339|ref|YP_006348253.2| - 2.8e-06 27.4 0.0 1.1e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|662859339|ref|YP_006348253.2| - 8e-06 25.9 0.0 0.012 15.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|662859339|ref|YP_006348253.2| - 0.0002 20.9 0.1 0.00068 19.1 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|662859339|ref|YP_006348253.2| - 0.0015 18.8 0.0 0.005 17.1 0.0 2.0 1 0 0 1 1 1 1 TOBE domain AAA_22 PF13401.6 gi|662859339|ref|YP_006348253.2| - 0.0026 18.0 0.3 0.005 17.1 0.3 1.7 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 gi|662859339|ref|YP_006348253.2| - 0.0027 16.9 0.0 0.0037 16.5 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA_16 PF13191.6 gi|662859339|ref|YP_006348253.2| - 0.0029 18.0 0.1 0.0056 17.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|662859339|ref|YP_006348253.2| - 0.0059 16.5 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|662859339|ref|YP_006348253.2| - 0.061 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase CysA_C_terminal PF17850.1 gi|662859339|ref|YP_006348253.2| - 0.091 13.3 0.3 1 10.0 0.0 2.9 3 0 0 3 3 3 0 CysA C-terminal regulatory domain AAA_29 PF13555.6 gi|662859339|ref|YP_006348253.2| - 0.15 11.9 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|662859339|ref|YP_006348253.2| - 0.17 11.5 0.3 0.59 9.7 0.1 2.0 3 1 0 3 3 3 0 AAA domain Glyco_hydro_15 PF00723.21 gi|389846015|ref|YP_006348254.1| - 0.11 11.3 0.1 6.6 5.4 0.0 2.5 2 1 0 2 2 2 0 Glycosyl hydrolases family 15 Regulator_TrmB PF11495.8 gi|389846016|ref|YP_006348255.1| - 3e-67 226.2 0.0 3.8e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|389846016|ref|YP_006348255.1| - 3.9e-14 52.3 0.1 9.1e-14 51.1 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|389846016|ref|YP_006348255.1| - 0.00044 20.1 0.0 0.00099 19.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|389846016|ref|YP_006348255.1| - 0.0025 17.7 0.1 0.015 15.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|389846016|ref|YP_006348255.1| - 0.0089 16.0 0.5 7.4 6.6 0.0 3.2 2 1 1 3 3 3 1 HTH domain PLDc_2 PF13091.6 gi|389846016|ref|YP_006348255.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain Rrf2 PF02082.20 gi|389846016|ref|YP_006348255.1| - 0.038 14.3 0.0 0.083 13.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|389846016|ref|YP_006348255.1| - 0.039 13.8 0.0 0.15 11.9 0.0 2.1 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|389846016|ref|YP_006348255.1| - 0.056 13.5 0.0 0.91 9.6 0.0 2.4 1 1 1 2 2 2 0 Winged helix-turn helix HTH_36 PF13730.6 gi|389846016|ref|YP_006348255.1| - 0.061 13.3 0.3 2.2 8.3 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain PcrB PF01884.17 gi|389846017|ref|YP_006348256.1| - 4.2e-37 127.8 0.5 1.9e-36 125.7 0.5 1.8 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|389846017|ref|YP_006348256.1| - 0.00019 21.0 0.0 0.00034 20.1 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein ADH_zinc_N_2 PF13602.6 gi|389846018|ref|YP_006348257.1| - 3.2e-27 96.2 0.2 6.7e-27 95.2 0.2 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|389846018|ref|YP_006348257.1| - 3.8e-19 69.0 0.0 6.4e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389846018|ref|YP_006348257.1| - 1.9e-08 34.1 0.0 6e-08 32.5 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|389846018|ref|YP_006348257.1| - 0.011 15.7 0.7 0.057 13.3 0.2 2.5 3 1 0 3 3 3 0 N-terminal domain of oxidoreductase DUF2855 PF11017.8 gi|389846018|ref|YP_006348257.1| - 0.036 13.8 0.0 0.061 13.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2855) ACP_syn_III_C PF08541.10 gi|389846018|ref|YP_006348257.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FMN_red PF03358.15 gi|389846019|ref|YP_006348258.1| - 2.8e-32 111.6 0.0 3.5e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|389846019|ref|YP_006348258.1| - 2.9e-08 33.7 0.0 3.7e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold META PF03724.16 gi|389846020|ref|YP_006348259.1| - 0.0049 16.8 4.1 0.74 9.8 0.1 2.8 2 1 0 2 2 2 2 META domain RIO1 PF01163.22 gi|389846021|ref|YP_006348260.1| - 1e-47 162.2 0.0 1.4e-47 161.7 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|389846021|ref|YP_006348260.1| - 2.1e-28 98.3 0.0 4.1e-28 97.4 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|389846021|ref|YP_006348260.1| - 0.00074 19.5 0.1 0.29 11.0 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family NUDIX PF00293.28 gi|389846022|ref|YP_006348261.1| - 1.2e-14 54.4 1.9 1.6e-14 54.0 1.9 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|389846022|ref|YP_006348261.1| - 7.5e-05 22.7 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Glyoxalase_6 PF18029.1 gi|389846023|ref|YP_006348262.1| - 7e-05 23.6 0.2 0.00041 21.1 0.0 2.3 2 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|389846023|ref|YP_006348262.1| - 0.00022 21.4 0.1 0.044 14.0 0.1 2.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389846023|ref|YP_006348262.1| - 0.014 15.7 0.1 14 6.0 0.0 3.0 2 1 1 3 3 3 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sigma70_r1_1 PF03979.14 gi|389846023|ref|YP_006348262.1| - 0.11 12.5 0.2 0.17 11.9 0.2 1.2 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 TxDE PF18711.1 gi|389846023|ref|YP_006348262.1| - 0.19 11.9 0.0 0.43 10.7 0.0 1.6 1 0 0 1 1 1 0 Toxoflavin-degrading enzyme P2_Phage_GpR PF06891.11 gi|389846023|ref|YP_006348262.1| - 0.21 11.7 0.0 0.4 10.8 0.0 1.4 1 0 0 1 1 1 0 P2 phage tail completion protein R (GpR) BPL_LplA_LipB PF03099.19 gi|662859340|ref|YP_006348263.2| - 3.1e-10 40.1 0.0 5.1e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family AP_endonuc_2 PF01261.24 gi|662859341|ref|YP_006348264.2| - 8.7e-23 80.9 0.5 1.6e-22 80.0 0.2 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Exo_endo_phos PF03372.23 gi|389846026|ref|YP_006348265.1| - 1.1e-11 44.7 0.0 2.3e-11 43.7 0.0 1.6 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family MLTR_LBD PF17765.1 gi|389846026|ref|YP_006348265.1| - 0.014 15.6 0.2 0.033 14.3 0.2 1.6 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain Methyltransf_25 PF13649.6 gi|389846027|ref|YP_006348266.1| - 3e-19 69.5 0.0 6.4e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846027|ref|YP_006348266.1| - 9.3e-19 67.9 0.1 2.1e-18 66.8 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846027|ref|YP_006348266.1| - 1e-16 61.1 0.0 1.7e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846027|ref|YP_006348266.1| - 6.3e-12 45.6 0.0 9.3e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389846027|ref|YP_006348266.1| - 3.6e-10 39.6 0.0 5.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|389846027|ref|YP_006348266.1| - 5.1e-10 40.0 0.0 1e-09 39.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|389846027|ref|YP_006348266.1| - 8.2e-09 35.3 0.0 1.5e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|389846027|ref|YP_006348266.1| - 3.6e-06 27.2 0.1 5e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|389846027|ref|YP_006348266.1| - 0.00019 21.0 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|389846027|ref|YP_006348266.1| - 0.00034 19.3 0.0 0.00045 18.9 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.20 gi|389846027|ref|YP_006348266.1| - 0.00068 18.8 0.0 0.0009 18.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|389846027|ref|YP_006348266.1| - 0.00084 19.4 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|389846027|ref|YP_006348266.1| - 0.00092 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|389846027|ref|YP_006348266.1| - 0.0024 17.6 0.0 0.0059 16.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|389846027|ref|YP_006348266.1| - 0.0058 16.0 0.0 0.0089 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|389846027|ref|YP_006348266.1| - 0.02 13.8 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|389846027|ref|YP_006348266.1| - 0.11 12.3 0.1 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_2 PF00891.18 gi|389846027|ref|YP_006348266.1| - 0.17 11.1 0.0 0.35 10.1 0.0 1.5 1 1 0 1 1 1 0 O-methyltransferase domain NAD_binding_10 PF13460.6 gi|389846028|ref|YP_006348267.1| - 3.4e-28 98.8 1.4 3.9e-28 98.6 1.4 1.0 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|389846028|ref|YP_006348267.1| - 1e-08 35.0 0.1 1.5e-08 34.4 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 gi|389846028|ref|YP_006348267.1| - 1e-05 25.7 0.3 2.1e-05 24.7 0.3 1.6 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 gi|389846028|ref|YP_006348267.1| - 1.9e-05 24.3 0.2 2.8e-05 23.8 0.2 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|389846028|ref|YP_006348267.1| - 0.0013 17.9 0.1 0.0019 17.4 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain DFP PF04127.15 gi|389846028|ref|YP_006348267.1| - 0.0051 16.7 0.1 0.0083 16.0 0.1 1.2 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein adh_short PF00106.25 gi|389846028|ref|YP_006348267.1| - 0.012 15.0 0.2 0.02 14.4 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|389846028|ref|YP_006348267.1| - 0.014 15.5 0.1 0.024 14.8 0.1 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|389846028|ref|YP_006348267.1| - 0.016 15.2 0.5 0.033 14.1 0.5 1.6 1 0 0 1 1 1 0 KR domain GDP_Man_Dehyd PF16363.5 gi|389846028|ref|YP_006348267.1| - 0.03 13.7 0.1 0.043 13.2 0.1 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase ApbA PF02558.16 gi|389846028|ref|YP_006348267.1| - 0.043 13.5 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3Beta_HSD PF01073.19 gi|389846028|ref|YP_006348267.1| - 0.15 11.0 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HxlR PF01638.17 gi|389846029|ref|YP_006348268.1| - 5.5e-21 74.2 0.1 6.8e-21 73.9 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|389846029|ref|YP_006348268.1| - 1.1e-06 28.7 0.0 1.5e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|389846029|ref|YP_006348268.1| - 2.2e-06 27.5 0.0 3.1e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|389846029|ref|YP_006348268.1| - 3.6e-06 27.4 0.1 5.5e-06 26.8 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|389846029|ref|YP_006348268.1| - 4.7e-05 23.2 0.0 0.0001 22.1 0.0 1.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|389846029|ref|YP_006348268.1| - 0.00039 20.3 0.1 0.00057 19.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|389846029|ref|YP_006348268.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|389846029|ref|YP_006348268.1| - 0.0012 18.7 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|389846029|ref|YP_006348268.1| - 0.0017 18.5 0.0 0.002 18.2 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_45 PF14947.6 gi|389846029|ref|YP_006348268.1| - 0.0027 17.7 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|389846029|ref|YP_006348268.1| - 0.0067 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389846029|ref|YP_006348268.1| - 0.0078 16.3 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|389846029|ref|YP_006348268.1| - 0.024 14.7 0.2 3.4 7.8 0.1 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|389846029|ref|YP_006348268.1| - 0.031 13.9 0.1 0.053 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|389846029|ref|YP_006348268.1| - 0.042 13.4 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|389846029|ref|YP_006348268.1| - 0.083 12.9 0.1 0.15 12.1 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|389846029|ref|YP_006348268.1| - 0.098 13.0 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator UBA PF00627.31 gi|389846029|ref|YP_006348268.1| - 0.1 12.5 0.2 0.21 11.5 0.2 1.5 1 0 0 1 1 1 0 UBA/TS-N domain zinc_ribbon_13 PF09855.9 gi|662859342|ref|YP_006348269.2| - 1.7e-26 92.1 0.3 1.9e-26 92.0 0.3 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|662859342|ref|YP_006348269.2| - 0.00083 19.7 0.2 0.0011 19.3 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|662859342|ref|YP_006348269.2| - 0.0031 16.9 2.5 0.67 9.4 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|662859342|ref|YP_006348269.2| - 0.0052 16.7 1.7 1.6 8.8 0.2 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|662859342|ref|YP_006348269.2| - 0.0096 15.6 2.9 1.1 9.1 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|662859342|ref|YP_006348269.2| - 0.024 14.7 0.4 0.044 13.8 0.4 1.4 1 1 0 1 1 1 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|662859342|ref|YP_006348269.2| - 0.068 13.3 1.1 1.3 9.2 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|662859342|ref|YP_006348269.2| - 0.093 12.6 1.9 2.1 8.3 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|662859342|ref|YP_006348269.2| - 0.093 12.3 0.8 0.55 9.8 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF2225 PF09986.9 gi|662859342|ref|YP_006348269.2| - 0.093 12.4 0.8 0.5 10.1 0.9 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) UPF0547 PF10571.9 gi|662859342|ref|YP_006348269.2| - 0.11 12.6 5.3 2.7 8.2 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|662859342|ref|YP_006348269.2| - 0.15 11.6 2.5 2.5 7.7 2.7 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|662859342|ref|YP_006348269.2| - 0.16 11.9 3.2 2.6 8.0 0.2 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|662859342|ref|YP_006348269.2| - 0.17 11.6 2.0 2.4 7.9 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.18 gi|662859342|ref|YP_006348269.2| - 0.27 11.1 5.2 2.5 8.0 0.3 2.3 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_9 PF14369.6 gi|662859342|ref|YP_006348269.2| - 0.46 10.8 3.0 5 7.5 1.2 2.3 2 0 0 2 2 2 0 zinc-ribbon Rubredoxin_2 PF18073.1 gi|662859342|ref|YP_006348269.2| - 0.47 10.2 5.8 5.1 6.9 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ATP_bind_3 PF01171.20 gi|389846032|ref|YP_006348271.1| - 6.9e-13 48.7 0.0 1.1e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|389846032|ref|YP_006348271.1| - 0.00079 19.5 0.0 0.0012 18.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|389846032|ref|YP_006348271.1| - 0.0023 17.1 0.0 0.0034 16.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.14 gi|389846032|ref|YP_006348271.1| - 0.016 14.8 0.0 0.038 13.6 0.0 1.5 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) zn-ribbon_14 PF16503.5 gi|389846032|ref|YP_006348271.1| - 0.019 14.4 1.1 0.019 14.4 1.1 2.7 4 0 0 4 4 4 0 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|389846032|ref|YP_006348271.1| - 0.03 13.1 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase RecR PF02132.15 gi|389846032|ref|YP_006348271.1| - 0.65 9.6 6.3 0.67 9.6 1.6 3.2 3 0 0 3 3 3 0 RecR protein Copper-bind PF00127.20 gi|389846033|ref|YP_006348272.1| - 2.6e-12 47.0 0.4 7.5e-12 45.6 0.1 1.9 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|389846033|ref|YP_006348272.1| - 1.7 8.6 5.1 5.7 7.0 5.1 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Tubulin PF00091.25 gi|389846034|ref|YP_006348273.1| - 8.8e-38 130.5 3.5 2.9e-37 128.8 3.5 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|389846034|ref|YP_006348273.1| - 4.3e-35 119.9 0.9 4.3e-35 119.9 0.9 2.8 2 1 0 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|389846034|ref|YP_006348273.1| - 0.033 13.6 0.0 0.073 12.4 0.0 1.5 1 0 0 1 1 1 0 ThiF family Csm1_B PF18211.1 gi|389846034|ref|YP_006348273.1| - 0.092 12.6 0.0 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 Csm1 subunit domain B RHH_1 PF01402.21 gi|662859344|ref|YP_006348274.2| - 6.6e-08 32.2 0.1 8.3e-08 31.9 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|662859344|ref|YP_006348274.2| - 0.00014 22.0 0.0 0.00015 21.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DZR PF12773.7 gi|389846036|ref|YP_006348275.1| - 4.8e-09 36.1 17.8 7.5e-07 29.1 9.0 1.7 1 1 1 2 2 2 2 Double zinc ribbon RHH_1 PF01402.21 gi|389846036|ref|YP_006348275.1| - 6e-07 29.2 1.1 5e-06 26.3 1.1 2.4 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family zinc_ribbon_2 PF13240.6 gi|389846036|ref|YP_006348275.1| - 3.1e-06 26.7 15.0 0.0009 18.9 5.5 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|389846036|ref|YP_006348275.1| - 3.5e-06 26.2 13.1 0.00057 19.2 4.3 2.7 1 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|389846036|ref|YP_006348275.1| - 1.8e-05 25.4 9.2 0.0003 21.5 1.5 2.2 2 0 0 2 2 2 2 zinc-ribbon family PolC_DP2 PF03833.13 gi|389846036|ref|YP_006348275.1| - 0.00024 19.1 0.3 0.00027 19.0 0.3 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 gi|389846036|ref|YP_006348275.1| - 0.0011 18.6 7.0 0.16 11.7 0.1 3.4 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|389846036|ref|YP_006348275.1| - 0.015 14.9 4.2 1.6 8.4 0.0 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DGF-1_C PF11040.8 gi|389846036|ref|YP_006348275.1| - 0.048 13.7 0.5 0.11 12.5 0.5 1.6 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus Cys_rich_KTR PF14205.6 gi|389846036|ref|YP_006348275.1| - 0.056 13.3 3.5 0.38 10.6 3.5 2.1 1 1 0 1 1 1 0 Cysteine-rich KTR OrfB_Zn_ribbon PF07282.11 gi|389846036|ref|YP_006348275.1| - 0.057 13.4 12.0 2.1 8.3 12.0 2.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|389846036|ref|YP_006348275.1| - 0.062 13.5 11.2 0.16 12.2 4.6 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 gi|389846036|ref|YP_006348275.1| - 0.081 12.9 13.0 1.1 9.2 2.4 3.8 3 1 0 3 3 3 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|389846036|ref|YP_006348275.1| - 0.1 12.6 9.4 0.59 10.2 4.3 2.3 1 1 1 2 2 2 0 zinc-ribbons Zn_Tnp_IS91 PF14319.6 gi|389846036|ref|YP_006348275.1| - 0.16 12.0 5.3 0.34 11.0 5.3 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L32p PF01783.23 gi|389846036|ref|YP_006348275.1| - 0.43 10.9 11.1 0.45 10.8 2.2 3.1 2 1 1 3 3 3 0 Ribosomal L32p protein family HypA PF01155.19 gi|389846036|ref|YP_006348275.1| - 0.49 10.4 10.4 0.42 10.6 2.2 2.6 2 1 1 3 3 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VapB_antitoxin PF09957.9 gi|389846036|ref|YP_006348275.1| - 0.53 10.2 0.1 0.53 10.2 0.1 2.1 2 1 0 2 2 1 0 Bacterial antitoxin of type II TA system, VapB TerY_C PF15616.6 gi|389846036|ref|YP_006348275.1| - 1.4 9.1 7.9 2.6 8.2 7.7 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain C1_1 PF00130.22 gi|389846036|ref|YP_006348275.1| - 1.4 8.8 8.9 2.3 8.1 6.0 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.6 gi|389846036|ref|YP_006348275.1| - 1.6 8.7 6.8 14 5.6 6.8 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.10 gi|389846036|ref|YP_006348275.1| - 1.6 8.9 11.4 0.69 10.1 2.2 3.1 2 1 1 3 3 3 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|389846036|ref|YP_006348275.1| - 2.3 8.2 10.8 2.7 8.0 4.6 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.9 gi|389846036|ref|YP_006348275.1| - 4.6 7.4 10.4 4.4 7.5 0.9 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.11 gi|389846036|ref|YP_006348275.1| - 4.7 7.3 13.4 9.2 6.3 6.9 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_RNApol_7kD PF03604.13 gi|389846036|ref|YP_006348275.1| - 6.9 6.4 8.8 1.2 8.9 1.0 2.7 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_7 PF02591.15 gi|389846036|ref|YP_006348275.1| - 8.6 6.6 12.6 17 5.7 0.3 3.5 2 1 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|389846036|ref|YP_006348275.1| - 8.6 6.4 10.1 3.4 7.7 1.2 3.0 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|389846036|ref|YP_006348275.1| - 9.1 7.0 10.9 18 6.1 1.1 3.3 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AP_endonuc_2 PF01261.24 gi|662859345|ref|YP_006348276.2| - 9.3e-21 74.2 0.3 1.2e-20 73.8 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel 2-ph_phosp PF04029.14 gi|389846038|ref|YP_006348277.1| - 1.8e-22 79.7 0.0 2.6e-22 79.1 0.0 1.3 1 1 0 1 1 1 1 2-phosphosulpholactate phosphatase Peripla_BP_6 PF13458.6 gi|389846038|ref|YP_006348277.1| - 0.018 14.8 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 Periplasmic binding protein ABC_tran PF00005.27 gi|389846041|ref|YP_006348280.1| - 3.5e-51 173.3 0.0 1.5e-26 93.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|389846041|ref|YP_006348280.1| - 1.4e-19 71.1 3.3 2.9e-05 24.0 0.0 4.2 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389846041|ref|YP_006348280.1| - 7e-17 61.6 0.8 8.8e-08 31.9 0.1 3.5 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389846041|ref|YP_006348280.1| - 3.7e-08 33.0 0.5 0.0004 20.1 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389846041|ref|YP_006348280.1| - 2.7e-07 31.1 1.9 0.0022 18.4 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain T2SSE PF00437.20 gi|389846041|ref|YP_006348280.1| - 1.8e-06 27.2 0.0 0.017 14.2 0.0 3.2 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|389846041|ref|YP_006348280.1| - 4.4e-06 27.0 0.4 0.053 13.8 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|389846041|ref|YP_006348280.1| - 7.3e-06 25.8 0.7 0.04 13.6 0.2 3.3 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|389846041|ref|YP_006348280.1| - 1e-05 26.2 0.0 0.062 13.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|389846041|ref|YP_006348280.1| - 2.4e-05 24.2 0.0 0.013 15.3 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain AAA_24 PF13479.6 gi|389846041|ref|YP_006348280.1| - 4.1e-05 23.4 0.0 0.082 12.6 0.0 2.5 3 0 0 3 3 2 2 AAA domain ATP_bind_1 PF03029.17 gi|389846041|ref|YP_006348280.1| - 0.00011 22.0 0.7 0.39 10.4 0.2 3.2 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|389846041|ref|YP_006348280.1| - 0.00012 22.4 0.6 0.8 9.9 0.0 3.3 2 1 0 2 2 2 2 AAA domain AAA_13 PF13166.6 gi|389846041|ref|YP_006348280.1| - 0.00014 20.7 0.0 0.26 9.9 0.0 3.1 4 0 0 4 4 4 2 AAA domain Mg_chelatase PF01078.21 gi|389846041|ref|YP_006348280.1| - 0.00018 21.0 0.0 0.44 9.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|389846041|ref|YP_006348280.1| - 0.00071 19.5 0.9 0.48 10.3 0.0 2.5 2 0 0 2 2 2 1 NACHT domain FtsK_SpoIIIE PF01580.18 gi|389846041|ref|YP_006348280.1| - 0.00092 18.6 0.3 0.13 11.6 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|389846041|ref|YP_006348280.1| - 0.0013 18.0 0.2 0.069 12.4 0.0 2.6 3 0 0 3 3 2 1 Zeta toxin G-alpha PF00503.20 gi|389846041|ref|YP_006348280.1| - 0.0023 17.1 0.0 0.95 8.5 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit MMR_HSR1 PF01926.23 gi|389846041|ref|YP_006348280.1| - 0.0025 17.9 0.1 0.041 14.0 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase MeaB PF03308.16 gi|389846041|ref|YP_006348280.1| - 0.0032 16.5 0.4 0.011 14.7 0.0 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|389846041|ref|YP_006348280.1| - 0.0032 17.2 0.3 1.4 8.6 0.0 3.7 4 0 0 4 4 4 1 IstB-like ATP binding protein NB-ARC PF00931.22 gi|389846041|ref|YP_006348280.1| - 0.0041 16.3 0.1 1.4 8.0 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain DUF87 PF01935.17 gi|389846041|ref|YP_006348280.1| - 0.0053 16.9 0.4 1 9.4 0.0 2.8 3 0 0 3 3 3 1 Helicase HerA, central domain DUF3584 PF12128.8 gi|389846041|ref|YP_006348280.1| - 0.0068 14.0 1.5 0.62 7.5 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) RNA_helicase PF00910.22 gi|389846041|ref|YP_006348280.1| - 0.0074 16.7 0.0 2.5 8.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase RsgA_GTPase PF03193.16 gi|389846041|ref|YP_006348280.1| - 0.011 15.7 0.1 0.52 10.2 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase DLIC PF05783.11 gi|389846041|ref|YP_006348280.1| - 0.011 14.6 0.2 3.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|389846041|ref|YP_006348280.1| - 0.014 15.3 0.0 2.9 7.8 0.0 2.6 2 0 0 2 2 2 0 NTPase ATPase PF06745.13 gi|389846041|ref|YP_006348280.1| - 0.015 14.7 0.3 1.8 7.9 0.0 2.4 2 0 0 2 2 2 0 KaiC PduV-EutP PF10662.9 gi|389846041|ref|YP_006348280.1| - 0.016 15.0 0.5 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 gi|389846041|ref|YP_006348280.1| - 0.018 15.1 0.1 0.53 10.3 0.0 2.9 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|389846041|ref|YP_006348280.1| - 0.022 14.7 0.0 2.2 8.2 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|389846041|ref|YP_006348280.1| - 0.026 14.9 0.6 2.2 8.6 0.0 2.8 3 0 0 3 3 2 0 AAA domain cobW PF02492.19 gi|389846041|ref|YP_006348280.1| - 0.038 13.6 0.3 2.5 7.6 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|389846041|ref|YP_006348280.1| - 0.042 13.9 0.2 7.2 6.7 0.0 3.0 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|389846041|ref|YP_006348280.1| - 0.042 13.9 0.2 13 5.8 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MukB PF04310.12 gi|389846041|ref|YP_006348280.1| - 0.048 13.5 0.1 0.99 9.2 0.0 2.2 2 0 0 2 2 2 0 MukB N-terminal SbcCD_C PF13558.6 gi|389846041|ref|YP_006348280.1| - 0.053 13.8 0.3 3.6 7.9 0.0 3.1 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|389846041|ref|YP_006348280.1| - 0.053 13.7 2.5 0.68 10.1 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|389846041|ref|YP_006348280.1| - 0.055 14.0 3.8 6.3 7.4 0.3 3.4 3 1 0 3 3 2 0 AAA domain AAA_7 PF12775.7 gi|389846041|ref|YP_006348280.1| - 0.055 13.0 0.2 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region TniB PF05621.11 gi|389846041|ref|YP_006348280.1| - 0.073 12.5 0.5 48 3.3 0.0 3.7 4 0 0 4 4 4 0 Bacterial TniB protein Roc PF08477.13 gi|389846041|ref|YP_006348280.1| - 0.13 12.5 0.2 22 5.3 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF815 PF05673.13 gi|389846041|ref|YP_006348280.1| - 0.19 10.9 0.2 0.48 9.5 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|389846041|ref|YP_006348280.1| - 0.19 12.2 4.0 3.7 8.0 0.3 3.1 3 0 0 3 3 2 0 AAA domain Pox_A32 PF04665.12 gi|389846041|ref|YP_006348280.1| - 0.23 10.9 0.8 12 5.3 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein SRP54 PF00448.22 gi|389846041|ref|YP_006348280.1| - 0.26 10.9 1.6 15 5.1 0.0 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|389846041|ref|YP_006348280.1| - 2.2 7.8 5.7 3.1 7.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain CbiQ PF02361.16 gi|662859347|ref|YP_006348281.2| - 8.1e-15 55.0 12.5 8.1e-15 55.0 12.5 2.4 2 1 0 2 2 2 1 Cobalt transport protein AhpC-TSA PF00578.21 gi|389846044|ref|YP_006348283.1| - 3.2e-20 72.3 0.0 3.7e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|389846044|ref|YP_006348283.1| - 1.6e-17 63.6 0.0 2e-17 63.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|389846044|ref|YP_006348283.1| - 0.041 14.0 0.1 0.73 10.0 0.0 2.2 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Hydrolase PF00702.26 gi|389846045|ref|YP_006348284.1| - 7.7e-09 36.1 0.2 2.4e-08 34.5 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389846045|ref|YP_006348284.1| - 4.1e-05 23.6 0.0 0.00011 22.2 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|389846045|ref|YP_006348284.1| - 0.00015 21.9 0.0 0.00034 20.7 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389846045|ref|YP_006348284.1| - 0.0073 16.7 0.1 0.012 16.1 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase RNA12 PF10443.9 gi|389846045|ref|YP_006348284.1| - 0.22 10.2 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein CobD_Cbib PF03186.13 gi|662859348|ref|YP_006348285.2| - 2.2e-71 240.3 10.3 2.7e-71 240.0 10.3 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|389846048|ref|YP_006348287.1| - 2.7e-40 138.7 20.1 3.2e-40 138.5 20.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|389846049|ref|YP_006348288.1| - 4e-17 63.0 1.5 4.8e-17 62.8 1.5 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|389846049|ref|YP_006348288.1| - 0.00052 19.7 0.0 0.00075 19.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|389846049|ref|YP_006348288.1| - 0.00073 19.3 0.1 0.0024 17.7 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|389846049|ref|YP_006348288.1| - 0.014 15.3 0.0 0.055 13.4 0.0 1.9 1 1 0 1 1 1 0 Cytidylyltransferase Aminotran_1_2 PF00155.21 gi|389846051|ref|YP_006348290.1| - 9.7e-39 133.5 0.0 1.3e-38 133.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II CbiZ PF01955.18 gi|389846052|ref|YP_006348291.1| - 4e-39 134.7 0.0 5.1e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.21 gi|389846053|ref|YP_006348292.1| - 9.3e-26 90.8 0.0 1.1e-25 90.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CbiA PF01656.23 gi|389846054|ref|YP_006348293.1| - 5.4e-19 68.5 0.0 8.7e-19 67.8 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|389846054|ref|YP_006348293.1| - 2e-12 47.4 0.0 3e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|389846054|ref|YP_006348293.1| - 2.8e-12 46.6 0.5 1.1e-06 28.4 0.2 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|389846054|ref|YP_006348293.1| - 2.1e-09 37.3 0.0 2.9e-08 33.5 0.0 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|389846054|ref|YP_006348293.1| - 1.7e-05 24.2 0.0 0.0024 17.1 0.1 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|389846054|ref|YP_006348293.1| - 2.5e-05 23.9 0.0 4.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|389846054|ref|YP_006348293.1| - 0.00039 20.3 0.1 0.0039 17.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|389846054|ref|YP_006348293.1| - 0.00091 18.6 1.0 0.0068 15.7 1.0 2.0 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.11 gi|389846054|ref|YP_006348293.1| - 0.023 14.0 0.2 0.037 13.3 0.2 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_30 PF13604.6 gi|389846054|ref|YP_006348293.1| - 0.048 13.4 1.3 0.16 11.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|389846054|ref|YP_006348293.1| - 0.056 13.0 1.8 0.093 12.3 1.8 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|389846054|ref|YP_006348293.1| - 0.063 13.0 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|389846054|ref|YP_006348293.1| - 0.093 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase OrfB_Zn_ribbon PF07282.11 gi|389846056|ref|YP_006348295.1| - 2.2e-14 53.1 0.3 2.9e-14 52.7 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1235 PF06822.12 gi|389846056|ref|YP_006348295.1| - 0.21 10.9 0.0 0.24 10.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1235) UbiA PF01040.18 gi|389846059|ref|YP_006348298.1| - 9e-16 57.9 27.2 1.4e-15 57.3 27.2 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family HisKA_7TM PF16927.5 gi|389846060|ref|YP_006348299.1| - 2.9e-55 187.7 16.1 3.6e-55 187.4 16.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|389846060|ref|YP_006348299.1| - 1.3e-09 38.5 0.0 2.5e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|389846060|ref|YP_006348299.1| - 6.2e-06 26.1 0.0 2.1e-05 24.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|389846060|ref|YP_006348299.1| - 4e-05 23.8 0.1 0.00048 20.3 0.1 2.4 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|389846060|ref|YP_006348299.1| - 0.00013 22.2 0.0 0.00065 19.9 0.0 2.2 1 1 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|389846060|ref|YP_006348299.1| - 0.0017 18.3 0.1 0.0036 17.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|389846060|ref|YP_006348299.1| - 0.0043 17.0 0.1 0.011 15.7 0.1 1.7 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 gi|389846060|ref|YP_006348299.1| - 0.043 13.6 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BatA PF07584.11 gi|389846060|ref|YP_006348299.1| - 0.34 11.3 4.3 6.2 7.3 1.6 2.8 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DUF4352 PF11611.8 gi|389846061|ref|YP_006348300.1| - 1.3e-35 122.4 1.2 1.7e-18 67.1 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4352) DUF5067 PF16729.5 gi|389846061|ref|YP_006348300.1| - 4.3e-08 33.1 1.2 0.00015 21.7 0.5 2.7 2 2 0 2 2 2 2 Domain of unknown function (DUF5067) Lum_binding PF00677.17 gi|389846061|ref|YP_006348300.1| - 0.0099 15.8 0.3 0.65 10.0 0.1 2.7 2 1 0 2 2 2 1 Lumazine binding domain HD PF01966.22 gi|389846063|ref|YP_006348302.1| - 9.3e-14 51.7 1.0 3e-13 50.0 0.2 2.3 3 0 0 3 3 3 1 HD domain HD_assoc PF13286.6 gi|389846063|ref|YP_006348302.1| - 2.5e-13 50.4 0.4 6.9e-13 48.9 0.2 1.9 2 0 0 2 2 2 1 Phosphohydrolase-associated domain HD_6 PF18019.1 gi|389846063|ref|YP_006348302.1| - 0.0032 17.6 0.1 0.006 16.7 0.1 1.5 1 0 0 1 1 1 1 HD domain PDEase_I PF00233.19 gi|389846063|ref|YP_006348302.1| - 0.12 12.0 0.2 0.23 11.2 0.2 1.4 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase betaPIX_CC PF16523.5 gi|662859350|ref|YP_006348303.2| - 0.0071 16.2 2.6 0.012 15.4 2.6 1.3 1 0 0 1 1 1 1 betaPIX coiled coil YabA PF06156.13 gi|662859350|ref|YP_006348303.2| - 0.018 15.7 0.2 0.035 14.7 0.2 1.4 1 0 0 1 1 1 0 Initiation control protein YabA PI3K_P85_iSH2 PF16454.5 gi|662859350|ref|YP_006348303.2| - 0.046 13.3 1.5 0.072 12.7 1.5 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HOOK PF05622.12 gi|662859350|ref|YP_006348303.2| - 0.054 11.7 2.8 0.077 11.1 2.8 1.1 1 0 0 1 1 1 0 HOOK protein Tmemb_cc2 PF10267.9 gi|662859350|ref|YP_006348303.2| - 0.076 12.2 1.1 0.11 11.6 1.1 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Spc7 PF08317.11 gi|662859350|ref|YP_006348303.2| - 0.17 10.7 2.4 0.26 10.1 2.4 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein JIP_LZII PF16471.5 gi|662859350|ref|YP_006348303.2| - 0.2 11.8 6.4 0.38 11.0 6.4 1.4 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II DUF3450 PF11932.8 gi|662859350|ref|YP_006348303.2| - 0.25 10.6 2.1 0.6 9.4 1.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) RPW8 PF05659.11 gi|662859350|ref|YP_006348303.2| - 0.28 10.8 0.5 0.44 10.2 0.5 1.2 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Jnk-SapK_ap_N PF09744.9 gi|662859350|ref|YP_006348303.2| - 0.52 10.5 7.7 0.99 9.6 7.7 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 DivIC PF04977.15 gi|662859350|ref|YP_006348303.2| - 0.68 9.7 5.3 1.5 8.6 5.3 1.5 1 0 0 1 1 1 0 Septum formation initiator UPF0242 PF06785.11 gi|662859350|ref|YP_006348303.2| - 0.78 9.8 3.6 1.2 9.2 3.6 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Phage_holin_3_5 PF16085.5 gi|389846066|ref|YP_006348305.1| - 0.05 13.8 0.3 0.12 12.6 0.3 1.6 1 0 0 1 1 1 0 Bacteriophage holin Hol, superfamily III PepSY_TM PF03929.16 gi|389846068|ref|YP_006348307.1| - 0.0004 20.1 0.1 0.00044 20.0 0.1 1.2 1 0 0 1 1 1 1 PepSY-associated TM region Pilin_N PF07790.11 gi|389846069|ref|YP_006348308.1| - 0.36 11.8 2.5 0.77 10.7 2.4 1.7 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|389846070|ref|YP_006348309.1| - 0.00077 20.3 0.5 0.0014 19.5 0.5 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal SWIRM-assoc_3 PF16498.5 gi|389846070|ref|YP_006348309.1| - 0.0084 16.3 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 SWIRM-associated domain at the C-terminal T2SSF PF00482.23 gi|389846071|ref|YP_006348310.1| - 9.3e-20 70.8 1.4 1.2e-09 38.2 0.5 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F CxC3 PF18804.1 gi|389846071|ref|YP_006348310.1| - 0.0052 16.6 0.0 0.0095 15.8 0.0 1.3 1 0 0 1 1 1 1 CxC3 like cysteine cluster associated with KDZ transposases T2SSE PF00437.20 gi|662859351|ref|YP_006348311.2| - 7.1e-24 84.3 0.1 2e-23 82.8 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|662859351|ref|YP_006348311.2| - 0.008 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|662859351|ref|YP_006348311.2| - 0.012 15.5 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|662859351|ref|YP_006348311.2| - 0.019 14.7 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|662859351|ref|YP_006348311.2| - 0.053 13.7 0.4 0.84 9.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|662859351|ref|YP_006348311.2| - 0.057 13.9 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain UDPG_MGDP_dh PF00984.19 gi|662859351|ref|YP_006348311.2| - 0.059 13.6 0.0 3.8 7.8 0.0 3.0 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain HisKA_7TM PF16927.5 gi|662859352|ref|YP_006348312.2| - 1.1e-53 182.6 23.4 1.4e-53 182.2 23.4 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|662859352|ref|YP_006348312.2| - 1.4e-12 48.1 0.0 2.7e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|662859352|ref|YP_006348312.2| - 9.7e-09 35.5 0.2 1.7e-06 28.3 0.2 2.4 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|662859352|ref|YP_006348312.2| - 5.4e-08 32.8 0.5 1.9e-06 27.8 0.5 2.5 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|662859352|ref|YP_006348312.2| - 1.5e-07 31.4 0.0 3.4e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|662859352|ref|YP_006348312.2| - 2.9e-06 27.2 0.0 1.8e-05 24.7 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|662859352|ref|YP_006348312.2| - 0.0017 18.6 0.0 0.0054 17.0 0.0 1.9 1 1 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|662859352|ref|YP_006348312.2| - 0.046 13.6 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|662859352|ref|YP_006348312.2| - 0.11 12.7 0.1 1.1 9.5 0.0 2.5 2 1 1 3 3 3 0 PAS fold UbiA PF01040.18 gi|389846074|ref|YP_006348313.1| - 5.2e-14 52.2 22.5 7.5e-14 51.6 22.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family zf-ribbon_3 PF13248.6 gi|389846075|ref|YP_006348314.1| - 5.1e-06 25.7 0.8 8.8e-06 24.9 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|389846075|ref|YP_006348314.1| - 2.1e-05 24.1 0.9 3.8e-05 23.3 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389846075|ref|YP_006348314.1| - 4.7e-05 22.8 1.0 0.021 14.3 0.1 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|389846075|ref|YP_006348314.1| - 0.00025 21.0 0.2 0.00045 20.2 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|389846075|ref|YP_006348314.1| - 0.0048 17.6 0.5 0.01 16.6 0.5 1.5 1 0 0 1 1 1 1 zinc-ribbon family LRR19-TM PF15176.6 gi|389846075|ref|YP_006348314.1| - 0.0085 16.1 0.0 0.012 15.6 0.0 1.1 1 0 0 1 1 1 1 Leucine-rich repeat family 19 TM domain DUF35_N PF12172.8 gi|389846075|ref|YP_006348314.1| - 0.014 15.3 1.3 0.026 14.4 1.3 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|389846075|ref|YP_006348314.1| - 0.028 14.5 1.5 0.047 13.7 0.7 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|389846075|ref|YP_006348314.1| - 0.19 11.7 1.4 0.39 10.7 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbons YhfH PF14149.6 gi|389846075|ref|YP_006348314.1| - 0.26 11.3 2.7 2.2 8.3 2.0 2.1 1 1 1 2 2 2 0 YhfH-like protein A2L_zn_ribbon PF08792.10 gi|389846075|ref|YP_006348314.1| - 0.34 10.7 1.9 19 5.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ACC PF17848.1 gi|389846075|ref|YP_006348314.1| - 0.87 9.7 3.4 59 3.9 0.0 3.1 2 1 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|389846075|ref|YP_006348314.1| - 1.7 8.9 5.6 1.4 9.1 2.9 2.2 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|389846075|ref|YP_006348314.1| - 4.2 7.5 6.4 31 4.8 6.6 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 ABC_tran PF00005.27 gi|389846077|ref|YP_006348316.1| - 2e-55 187.1 0.0 7.8e-28 97.7 0.0 3.1 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|389846077|ref|YP_006348316.1| - 3.7e-39 133.1 2.0 1e-20 74.0 0.3 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389846077|ref|YP_006348316.1| - 4.8e-11 43.0 1.0 1e-05 25.5 0.0 4.0 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389846077|ref|YP_006348316.1| - 5.2e-08 32.6 0.2 0.0029 17.1 0.0 3.8 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389846077|ref|YP_006348316.1| - 8.5e-06 26.1 1.5 0.23 11.8 0.0 3.8 4 0 0 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|389846077|ref|YP_006348316.1| - 0.00023 21.6 0.7 0.44 10.9 0.0 3.5 3 0 0 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|389846077|ref|YP_006348316.1| - 0.00025 21.0 0.0 1.1 9.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|389846077|ref|YP_006348316.1| - 0.0022 17.7 0.0 0.67 9.6 0.0 2.6 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|389846077|ref|YP_006348316.1| - 0.0036 17.0 1.5 1.7 8.4 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|389846077|ref|YP_006348316.1| - 0.0055 16.2 0.0 0.99 8.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA PF00004.29 gi|389846077|ref|YP_006348316.1| - 0.013 16.0 0.1 7.7 6.9 0.0 4.1 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|389846077|ref|YP_006348316.1| - 0.014 15.3 0.4 1.9 8.4 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 gi|389846077|ref|YP_006348316.1| - 0.014 14.8 0.0 5 6.5 0.0 2.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AIG1 PF04548.16 gi|389846077|ref|YP_006348316.1| - 0.018 14.4 0.1 4.7 6.5 0.1 2.9 3 0 0 3 3 3 0 AIG1 family AAA_24 PF13479.6 gi|389846077|ref|YP_006348316.1| - 0.12 12.1 0.1 10 5.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|389846077|ref|YP_006348316.1| - 0.16 11.5 8.8 9.5 5.7 0.2 4.5 5 0 0 5 5 5 0 AAA domain TniB PF05621.11 gi|389846077|ref|YP_006348316.1| - 0.31 10.4 0.6 5.9 6.2 0.0 2.9 4 0 0 4 4 4 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|389846077|ref|YP_006348316.1| - 1.2 8.8 3.4 37 4.0 0.1 3.2 4 0 0 4 4 4 0 Sigma-54 interaction domain SBP_bac_5 PF00496.22 gi|662859353|ref|YP_006348317.2| - 1.6e-90 303.8 2.0 2.2e-90 303.4 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|662859353|ref|YP_006348317.2| - 0.00058 19.6 9.7 0.0011 18.7 9.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|389846079|ref|YP_006348318.1| - 2.6e-37 128.4 13.9 4.1e-37 127.7 13.9 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Baculo_p74 PF04583.12 gi|389846079|ref|YP_006348318.1| - 0.0063 16.0 1.0 0.013 15.0 0.8 1.6 1 1 0 1 1 1 1 Baculoviridae p74 conserved region BPD_transp_1 PF00528.22 gi|389846080|ref|YP_006348319.1| - 2.9e-32 111.9 9.0 2.9e-32 111.9 9.0 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389846080|ref|YP_006348319.1| - 1.8e-06 27.8 4.2 2.8e-06 27.2 0.4 2.8 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Wzy_C_2 PF11846.8 gi|389846080|ref|YP_006348319.1| - 0.056 13.4 1.0 0.15 12.0 0.2 2.0 1 1 1 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal Cdc6_C PF09079.11 gi|389846082|ref|YP_006348321.1| - 4.8e-21 74.5 0.0 1.6e-20 72.8 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389846082|ref|YP_006348321.1| - 4.3e-11 43.2 0.1 1.4e-10 41.6 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389846082|ref|YP_006348321.1| - 3.2e-09 37.4 0.1 1.5e-07 31.9 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389846082|ref|YP_006348321.1| - 4.2e-08 33.7 0.0 1.2e-07 32.3 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|389846082|ref|YP_006348321.1| - 0.0003 20.3 0.0 0.00052 19.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|389846082|ref|YP_006348321.1| - 0.0013 18.7 0.0 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|389846082|ref|YP_006348321.1| - 0.0014 18.6 0.0 0.0036 17.2 0.0 1.7 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|389846082|ref|YP_006348321.1| - 0.0019 17.4 0.0 0.0032 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|389846082|ref|YP_006348321.1| - 0.0049 16.1 0.0 0.018 14.3 0.0 1.9 3 0 0 3 3 3 1 NB-ARC domain AAA_5 PF07728.14 gi|389846082|ref|YP_006348321.1| - 0.02 14.9 0.0 0.1 12.6 0.0 2.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|389846082|ref|YP_006348321.1| - 0.037 14.6 0.1 0.27 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|389846082|ref|YP_006348321.1| - 0.038 13.7 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|389846082|ref|YP_006348321.1| - 0.066 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|389846082|ref|YP_006348321.1| - 0.07 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Phage-MuB_C PF09077.11 gi|389846082|ref|YP_006348321.1| - 0.081 12.8 0.7 0.17 11.8 0.7 1.6 1 0 0 1 1 1 0 Mu B transposition protein, C terminal AAA_25 PF13481.6 gi|389846082|ref|YP_006348321.1| - 0.09 12.3 0.0 4.9 6.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|389846082|ref|YP_006348321.1| - 0.091 12.8 0.0 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_lid_4 PF17864.1 gi|389846082|ref|YP_006348321.1| - 0.1 12.4 0.1 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 RuvB AAA lid domain AAA_assoc_2 PF16193.5 gi|389846082|ref|YP_006348321.1| - 0.13 12.6 0.4 0.34 11.3 0.4 1.7 1 0 0 1 1 1 0 AAA C-terminal domain FANCI_S3 PF14677.6 gi|389846082|ref|YP_006348321.1| - 0.16 11.7 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 FANCI solenoid 3 DUF4129 PF13559.6 gi|389846083|ref|YP_006348322.1| - 1.1e-09 38.4 1.5 1.1e-09 38.4 1.5 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Sensor PF13796.6 gi|389846084|ref|YP_006348323.1| - 0.011 15.8 1.8 0.011 15.8 1.8 1.6 1 1 0 1 1 1 0 Putative sensor DUF58 PF01882.18 gi|389846085|ref|YP_006348324.1| - 5.3e-22 77.9 0.4 5.3e-22 77.9 0.4 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|389846085|ref|YP_006348324.1| - 4.9e-09 36.4 2.4 1e-08 35.4 1.7 1.9 1 1 1 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|389846085|ref|YP_006348324.1| - 0.00049 20.3 1.0 0.0014 18.9 1.0 1.8 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|389846085|ref|YP_006348324.1| - 0.021 15.1 0.0 0.051 13.8 0.0 1.6 1 1 0 1 1 1 0 CARDB DUF4232 PF14016.6 gi|389846085|ref|YP_006348324.1| - 0.66 10.1 6.4 0.95 9.6 2.8 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF4232) AAA_3 PF07726.11 gi|389846086|ref|YP_006348325.1| - 7.4e-66 220.0 0.5 1.3e-65 219.2 0.2 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|389846086|ref|YP_006348325.1| - 9.8e-19 67.0 1.8 2e-18 66.0 1.8 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|389846086|ref|YP_006348325.1| - 1.2e-14 54.5 0.0 3.7e-14 52.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|389846086|ref|YP_006348325.1| - 1.9e-06 28.3 0.0 8.3e-06 26.3 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|389846086|ref|YP_006348325.1| - 1.3e-05 25.0 0.0 0.0011 18.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|389846086|ref|YP_006348325.1| - 0.0006 19.0 0.0 0.00092 18.4 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|389846086|ref|YP_006348325.1| - 0.0012 18.3 0.1 0.85 9.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|389846086|ref|YP_006348325.1| - 0.0039 17.0 0.0 0.8 9.4 0.0 2.2 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|389846086|ref|YP_006348325.1| - 0.084 13.0 0.0 0.42 10.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.6 gi|389846086|ref|YP_006348325.1| - 0.1 12.9 0.0 15 5.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain ThiD2 PF17792.1 gi|389846086|ref|YP_006348325.1| - 0.11 13.0 0.7 0.19 12.2 0.7 1.4 1 0 0 1 1 1 0 ThiD2 family HMGL-like PF00682.19 gi|389846089|ref|YP_006348328.1| - 1.2e-66 225.0 0.8 1.2e-66 225.0 0.8 2.0 3 0 0 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|389846089|ref|YP_006348328.1| - 7.7e-33 113.2 1.8 1.9e-32 111.9 1.8 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|389846089|ref|YP_006348328.1| - 0.02 14.3 0.6 0.22 10.9 0.1 2.5 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel MC1 PF05854.11 gi|389846089|ref|YP_006348328.1| - 0.16 12.3 0.3 0.51 10.7 0.0 1.9 2 0 0 2 2 2 0 Non-histone chromosomal protein MC1 DUF192 PF02643.15 gi|662859354|ref|YP_009034586.1| - 5e-20 71.5 0.0 5.8e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 RecA_dep_nuc PF16786.5 gi|662859355|ref|YP_006348329.2| - 0.0016 18.5 0.2 0.0025 17.9 0.2 1.4 1 0 0 1 1 1 1 Recombination enhancement, RecA-dependent nuclease GATase PF00117.28 gi|389846091|ref|YP_006348330.1| - 1e-33 116.7 0.0 1.3e-33 116.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|389846091|ref|YP_006348330.1| - 6.8e-14 52.1 2.2 3.9e-12 46.4 0.4 2.9 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|389846091|ref|YP_006348330.1| - 0.036 13.7 0.3 0.14 11.8 0.4 1.8 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF2070 PF09843.9 gi|389846092|ref|YP_006348331.1| - 2.3e-206 686.5 0.8 2.6e-206 686.3 0.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) TF_Zn_Ribbon PF08271.12 gi|662859356|ref|YP_006348332.2| - 5.6e-05 22.6 0.9 0.033 13.7 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|662859356|ref|YP_006348332.2| - 0.00011 22.1 1.1 0.015 15.2 0.2 2.4 2 0 0 2 2 2 1 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|662859356|ref|YP_006348332.2| - 0.00083 18.7 1.8 0.44 10.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|662859356|ref|YP_006348332.2| - 0.0012 19.0 0.2 0.047 14.0 0.0 2.2 2 0 0 2 2 2 1 Ribosomal L32p protein family UPF0547 PF10571.9 gi|662859356|ref|YP_006348332.2| - 0.0012 18.8 1.1 0.17 12.0 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|662859356|ref|YP_006348332.2| - 0.0057 16.3 1.7 1.9 8.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|662859356|ref|YP_006348332.2| - 0.0059 16.3 0.9 2.8 7.8 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|662859356|ref|YP_006348332.2| - 0.0078 16.3 0.2 1.5 9.0 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|662859356|ref|YP_006348332.2| - 0.018 14.9 1.7 0.04 13.8 1.7 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|662859356|ref|YP_006348332.2| - 0.018 15.0 1.3 0.048 13.7 1.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|662859356|ref|YP_006348332.2| - 0.029 14.1 2.5 3.6 7.4 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|662859356|ref|YP_006348332.2| - 0.056 13.4 2.8 3.7 7.6 2.8 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TackOD1 PF18551.1 gi|662859356|ref|YP_006348332.2| - 0.065 12.9 0.6 0.63 9.7 0.6 2.0 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zf-tcix PF14952.6 gi|662859356|ref|YP_006348332.2| - 0.2 11.3 3.6 2.2 8.0 0.0 2.5 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DUF3194 PF11419.8 gi|662859357|ref|YP_006348333.2| - 2.2e-06 27.9 1.4 3.1e-06 27.4 1.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Ribosomal_S30AE PF02482.19 gi|662859357|ref|YP_006348333.2| - 0.013 16.3 1.4 0.016 16.0 1.4 1.1 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein MucB_RseB_C PF17188.4 gi|662859357|ref|YP_006348333.2| - 0.047 13.9 0.0 0.053 13.7 0.0 1.2 1 0 0 1 1 1 0 MucB/RseB C-terminal domain Prefoldin_2 PF01920.20 gi|389846095|ref|YP_006348334.1| - 4.7e-25 87.6 21.4 5.2e-25 87.4 21.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|389846095|ref|YP_006348334.1| - 0.00021 21.2 14.4 0.00037 20.4 14.4 1.4 1 1 0 1 1 1 1 Prefoldin subunit CLZ PF16526.5 gi|389846095|ref|YP_006348334.1| - 0.00021 21.6 4.9 0.00021 21.6 4.9 2.4 2 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels bZIP_1 PF00170.21 gi|389846095|ref|YP_006348334.1| - 0.015 15.4 5.1 0.015 15.4 5.1 2.3 2 0 0 2 2 2 0 bZIP transcription factor XhlA PF10779.9 gi|389846095|ref|YP_006348334.1| - 0.017 15.3 2.0 0.017 15.3 2.0 2.7 2 1 1 3 3 3 0 Haemolysin XhlA GIT_CC PF16559.5 gi|389846095|ref|YP_006348334.1| - 0.029 14.2 3.4 0.029 14.2 3.4 2.3 2 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF5082 PF16888.5 gi|389846095|ref|YP_006348334.1| - 0.034 14.4 12.4 0.044 14.1 12.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) Sigma70_ner PF04546.13 gi|389846095|ref|YP_006348334.1| - 0.053 13.4 13.5 0.05 13.5 2.1 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region Myb_DNA-bind_4 PF13837.6 gi|389846095|ref|YP_006348334.1| - 0.062 13.7 0.8 0.16 12.3 0.9 1.8 1 1 0 1 1 1 0 Myb/SANT-like DNA-binding domain TraF_2 PF13729.6 gi|389846095|ref|YP_006348334.1| - 0.075 12.4 0.1 0.075 12.4 0.1 1.9 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein PspA_IM30 PF04012.12 gi|389846095|ref|YP_006348334.1| - 0.081 12.5 18.6 0.44 10.1 19.0 1.7 1 1 0 1 1 1 0 PspA/IM30 family BRI3BP PF14965.6 gi|389846095|ref|YP_006348334.1| - 0.092 12.3 0.3 0.19 11.3 0.3 1.5 1 0 0 1 1 1 0 Negative regulator of p53/TP53 WXG100 PF06013.12 gi|389846095|ref|YP_006348334.1| - 0.12 12.7 9.4 0.82 9.9 1.5 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Lebercilin PF15619.6 gi|389846095|ref|YP_006348334.1| - 0.24 11.0 18.9 0.54 9.9 18.9 1.5 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Atg14 PF10186.9 gi|389846095|ref|YP_006348334.1| - 0.25 10.4 7.7 0.36 9.9 7.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Sec8_exocyst PF04048.14 gi|389846095|ref|YP_006348334.1| - 0.29 11.0 9.4 0.08 12.8 3.3 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DUF4795 PF16043.5 gi|389846095|ref|YP_006348334.1| - 0.3 10.6 17.7 0.53 9.9 17.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) GCN5L1 PF06320.13 gi|389846095|ref|YP_006348334.1| - 0.37 10.9 12.2 2.4 8.4 2.9 2.1 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF3584 PF12128.8 gi|389846095|ref|YP_006348334.1| - 0.43 8.0 12.8 0.55 7.7 12.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ING PF12998.7 gi|389846095|ref|YP_006348334.1| - 0.46 11.1 8.7 0.56 10.8 6.9 2.0 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding DUF1664 PF07889.12 gi|389846095|ref|YP_006348334.1| - 0.46 10.5 10.4 11 6.1 10.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|389846095|ref|YP_006348334.1| - 0.47 11.1 14.3 0.077 13.6 5.9 2.3 2 0 0 2 2 2 0 SlyX PRP1_N PF06424.12 gi|389846095|ref|YP_006348334.1| - 0.47 10.8 9.0 0.68 10.3 9.0 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Exonuc_VII_L PF02601.15 gi|389846095|ref|YP_006348334.1| - 0.48 10.0 6.8 0.6 9.6 6.8 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit ERp29 PF07749.12 gi|389846095|ref|YP_006348334.1| - 0.52 11.2 6.7 2.3 9.1 6.7 2.0 1 1 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain FUSC PF04632.12 gi|389846095|ref|YP_006348334.1| - 0.55 8.7 3.2 0.72 8.3 3.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Dor1 PF04124.12 gi|389846095|ref|YP_006348334.1| - 0.55 8.9 9.3 0.52 9.0 1.3 2.0 2 0 0 2 2 2 0 Dor1-like family MIEAP PF16026.5 gi|389846095|ref|YP_006348334.1| - 0.61 10.3 5.8 0.24 11.6 2.9 1.6 1 1 1 2 2 2 0 Mitochondria-eating protein Prominin PF05478.11 gi|389846095|ref|YP_006348334.1| - 0.62 8.0 5.4 0.86 7.5 5.4 1.2 1 0 0 1 1 1 0 Prominin Med28 PF11594.8 gi|389846095|ref|YP_006348334.1| - 0.63 10.1 6.7 3.5 7.7 1.3 2.1 1 1 1 2 2 2 0 Mediator complex subunit 28 AAA_27 PF13514.6 gi|389846095|ref|YP_006348334.1| - 0.66 9.5 6.3 2.5 7.7 0.4 2.0 1 1 1 2 2 2 0 AAA domain NPV_P10 PF05531.12 gi|389846095|ref|YP_006348334.1| - 0.68 10.4 9.6 0.48 10.9 1.9 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein YnfE PF17452.2 gi|389846095|ref|YP_006348334.1| - 0.68 10.3 7.7 0.095 13.0 2.9 1.9 1 1 1 2 2 2 0 Uncharacterized YnfE-like Lectin_N PF03954.14 gi|389846095|ref|YP_006348334.1| - 0.7 9.6 12.4 0.86 9.3 2.2 2.1 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DHR10 PF18595.1 gi|389846095|ref|YP_006348334.1| - 0.75 9.9 23.0 2.1 8.4 23.0 1.7 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain DUF3450 PF11932.8 gi|389846095|ref|YP_006348334.1| - 0.88 8.8 21.5 0.19 11.0 7.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|389846095|ref|YP_006348334.1| - 1.1 9.3 22.6 14 5.8 22.6 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Sec34 PF04136.15 gi|389846095|ref|YP_006348334.1| - 1.2 9.0 14.5 0.97 9.3 3.4 2.1 1 1 0 2 2 2 0 Sec34-like family Peptidase_M41 PF01434.18 gi|389846095|ref|YP_006348334.1| - 1.4 8.7 7.4 2.5 7.9 7.4 1.5 1 1 0 1 1 1 0 Peptidase family M41 Laminin_II PF06009.12 gi|389846095|ref|YP_006348334.1| - 1.7 8.7 12.2 11 6.0 12.2 1.9 1 1 0 1 1 1 0 Laminin Domain II FlaC_arch PF05377.11 gi|389846095|ref|YP_006348334.1| - 1.9 9.0 16.0 0.26 11.7 7.4 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) ERM PF00769.19 gi|389846095|ref|YP_006348334.1| - 1.9 8.3 21.7 3.7 7.3 21.7 1.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF724 PF05266.14 gi|389846095|ref|YP_006348334.1| - 1.9 8.3 13.3 2.6 7.8 13.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Fib_alpha PF08702.10 gi|389846095|ref|YP_006348334.1| - 1.9 8.6 12.8 14 5.9 12.9 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|389846095|ref|YP_006348334.1| - 2.3 7.0 20.2 2.7 6.8 6.7 1.8 1 1 0 2 2 2 0 Spc7 kinetochore protein EzrA PF06160.12 gi|389846095|ref|YP_006348334.1| - 2.8 6.0 16.7 4.4 5.4 16.7 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Com_YlbF PF06133.11 gi|389846095|ref|YP_006348334.1| - 2.9 8.6 20.2 0.14 12.8 6.2 2.2 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA Spc24 PF08286.11 gi|389846095|ref|YP_006348334.1| - 2.9 8.2 18.1 3.9 7.8 5.1 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 RasGAP_C PF03836.15 gi|389846095|ref|YP_006348334.1| - 3.3 7.9 14.4 1.4 9.1 3.1 2.1 1 1 0 2 2 2 0 RasGAP C-terminus Fzo_mitofusin PF04799.13 gi|389846095|ref|YP_006348334.1| - 3.7 7.1 13.0 4.7 6.7 4.0 2.1 1 1 1 2 2 2 0 fzo-like conserved region DUF4446 PF14584.6 gi|389846095|ref|YP_006348334.1| - 4.2 7.3 11.6 0.56 10.2 3.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) ACCA PF03255.14 gi|389846095|ref|YP_006348334.1| - 4.3 7.2 9.3 3.6 7.5 1.4 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Jnk-SapK_ap_N PF09744.9 gi|389846095|ref|YP_006348334.1| - 4.5 7.5 22.0 19 5.4 22.0 1.8 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF4407 PF14362.6 gi|389846095|ref|YP_006348334.1| - 4.5 6.5 11.6 37 3.5 11.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF948 PF06103.11 gi|389846095|ref|YP_006348334.1| - 4.8 7.5 9.2 19 5.6 1.3 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Mem_trans PF03547.18 gi|389846095|ref|YP_006348334.1| - 5.2 5.4 4.3 5.9 5.2 4.3 1.1 1 0 0 1 1 1 0 Membrane transport protein DUF4618 PF15397.6 gi|389846095|ref|YP_006348334.1| - 5.8 6.2 19.4 26 4.1 19.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) COG2 PF06148.11 gi|389846095|ref|YP_006348334.1| - 6.2 6.9 12.2 1.9 8.6 2.7 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 LPP PF04728.13 gi|389846095|ref|YP_006348334.1| - 6.5 7.2 11.0 9.4 6.7 1.4 2.6 2 1 0 2 2 2 0 Lipoprotein leucine-zipper ArAE_2_N PF10337.9 gi|389846095|ref|YP_006348334.1| - 6.8 5.6 5.2 8.4 5.3 5.2 1.1 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal Flagellin_N PF00669.20 gi|389846095|ref|YP_006348334.1| - 6.8 6.8 10.2 4.9 7.2 4.2 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region Ax_dynein_light PF10211.9 gi|389846095|ref|YP_006348334.1| - 7.1 6.5 18.8 0.81 9.6 9.2 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain LMBR1 PF04791.16 gi|389846095|ref|YP_006348334.1| - 7.3 5.4 7.5 9.4 5.0 7.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein OmpH PF03938.14 gi|389846095|ref|YP_006348334.1| - 7.4 6.9 23.1 1.9 8.8 9.0 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF3053 PF11254.8 gi|389846095|ref|YP_006348334.1| - 7.7 6.0 11.3 5.8 6.4 3.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) HSP70 PF00012.20 gi|389846095|ref|YP_006348334.1| - 8.5 4.4 11.2 11 4.1 11.2 1.1 1 0 0 1 1 1 0 Hsp70 protein PCRF PF03462.18 gi|389846095|ref|YP_006348334.1| - 8.9 6.1 16.3 20 5.0 16.3 1.5 1 1 0 1 1 1 0 PCRF domain DUF4200 PF13863.6 gi|389846095|ref|YP_006348334.1| - 8.9 6.7 20.5 6.6 7.2 8.9 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) GAS PF13851.6 gi|389846095|ref|YP_006348334.1| - 9.5 5.5 21.1 18 4.6 5.6 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|389846095|ref|YP_006348334.1| - 9.6 6.5 16.1 7.1 6.9 3.5 2.3 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Pcc1 PF09341.10 gi|389846096|ref|YP_006348335.1| - 1e-12 48.0 0.3 1.1e-12 47.9 0.3 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|389846097|ref|YP_006348336.1| - 8.9e-11 41.3 5.0 1.1e-10 41.0 5.0 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|389846097|ref|YP_006348336.1| - 4.3e-05 22.8 0.3 0.003 16.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|389846097|ref|YP_006348336.1| - 0.00051 19.6 1.6 0.12 12.0 0.3 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|389846097|ref|YP_006348336.1| - 0.0009 19.2 0.4 0.00094 19.2 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|389846097|ref|YP_006348336.1| - 0.00097 18.8 0.4 0.039 13.7 1.3 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain zf-CHCC PF10276.9 gi|389846097|ref|YP_006348336.1| - 0.0046 17.0 0.1 0.0083 16.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain YacG PF03884.14 gi|389846097|ref|YP_006348336.1| - 0.0049 16.6 0.5 0.2 11.4 0.1 2.0 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG Zn_Tnp_IS1595 PF12760.7 gi|389846097|ref|YP_006348336.1| - 0.0065 16.4 4.9 0.11 12.5 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|389846097|ref|YP_006348336.1| - 0.011 15.7 1.0 0.022 14.8 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon Spt4 PF06093.13 gi|389846097|ref|YP_006348336.1| - 0.016 15.3 0.2 0.017 15.2 0.2 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Zn-ribbon_8 PF09723.10 gi|389846097|ref|YP_006348336.1| - 0.017 15.2 3.2 0.029 14.5 3.2 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|389846097|ref|YP_006348336.1| - 0.022 14.7 0.2 0.026 14.5 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPXG PF14255.6 gi|389846097|ref|YP_006348336.1| - 0.034 14.0 0.7 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|389846097|ref|YP_006348336.1| - 0.04 14.3 1.0 0.11 12.9 0.1 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar Sgf11 PF08209.11 gi|389846097|ref|YP_006348336.1| - 0.042 13.4 2.4 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Anti-TRAP PF15777.5 gi|389846097|ref|YP_006348336.1| - 0.068 13.1 0.1 0.083 12.9 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein TF_Zn_Ribbon PF08271.12 gi|389846097|ref|YP_006348336.1| - 0.072 12.6 3.6 0.21 11.1 3.7 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding DUF951 PF06107.11 gi|389846097|ref|YP_006348336.1| - 0.08 12.9 0.3 3.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF3268 PF11672.8 gi|389846097|ref|YP_006348336.1| - 0.084 13.2 0.3 0.47 10.8 0.0 1.9 2 0 0 2 2 2 0 zinc-finger-containing domain zinc_ribbon_2 PF13240.6 gi|389846097|ref|YP_006348336.1| - 0.12 12.1 6.0 4 7.3 6.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 gi|389846097|ref|YP_006348336.1| - 0.15 12.1 1.1 0.76 9.8 1.2 1.8 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|389846097|ref|YP_006348336.1| - 0.19 11.7 2.3 0.31 11.0 2.2 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-Di19 PF05605.12 gi|389846097|ref|YP_006348336.1| - 0.21 11.9 2.2 0.61 10.4 0.3 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.6 gi|389846097|ref|YP_006348336.1| - 0.43 10.6 5.7 19 5.3 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|389846098|ref|YP_006348337.1| - 4.4e-22 78.0 0.9 5.2e-22 77.7 0.9 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DUF2103 PF09876.9 gi|389846099|ref|YP_006348338.1| - 2.4e-39 133.3 0.2 3.9e-39 132.6 0.2 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) TruD PF01142.18 gi|389846100|ref|YP_006348339.1| - 1.9e-155 517.8 0.0 2.1e-155 517.6 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2201_N PF13203.6 gi|389846100|ref|YP_006348339.1| - 0.016 14.9 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain PTH2 PF01981.16 gi|389846101|ref|YP_006348340.1| - 5.5e-41 139.5 0.0 6.1e-41 139.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Yip1 PF04893.17 gi|389846102|ref|YP_006348341.1| - 1.6e-17 63.7 3.4 2.4e-17 63.2 3.4 1.2 1 0 0 1 1 1 1 Yip1 domain DUF4307 PF14155.6 gi|389846102|ref|YP_006348341.1| - 1.1 9.1 5.0 3.3 7.6 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DCD PF06559.11 gi|389846103|ref|YP_006348342.1| - 1.1e-17 63.9 0.0 1.1e-12 47.5 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|389846103|ref|YP_006348342.1| - 1.2e-16 60.6 0.0 1.6e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 dUTPase ThiP_synth PF10120.9 gi|389846104|ref|YP_006348343.1| - 6.4e-50 169.0 0.0 9.1e-50 168.5 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|389846104|ref|YP_006348343.1| - 9.5e-07 28.8 0.0 2e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|389846104|ref|YP_006348343.1| - 0.00014 22.1 0.3 0.00037 20.8 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|389846104|ref|YP_006348343.1| - 0.00017 21.3 0.1 0.00062 19.5 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|389846104|ref|YP_006348343.1| - 0.00029 20.3 0.6 0.0012 18.3 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|389846104|ref|YP_006348343.1| - 0.00031 20.5 0.0 0.0013 18.6 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_26 PF13443.6 gi|389846104|ref|YP_006348343.1| - 0.00045 20.6 0.0 0.00086 19.7 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|389846104|ref|YP_006348343.1| - 0.00087 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain KorB PF08535.10 gi|389846104|ref|YP_006348343.1| - 0.0022 18.0 0.2 0.63 10.1 0.0 2.6 2 1 0 2 2 2 1 KorB domain YdaS_antitoxin PF15943.5 gi|389846104|ref|YP_006348343.1| - 0.0026 17.6 0.0 0.0062 16.4 0.0 1.6 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|389846104|ref|YP_006348343.1| - 0.003 17.1 0.0 0.0084 15.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 gi|389846104|ref|YP_006348343.1| - 0.004 17.1 0.0 0.0086 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain P22_Cro PF14549.6 gi|389846104|ref|YP_006348343.1| - 0.0094 15.8 0.1 0.022 14.6 0.1 1.6 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro HTH_28 PF13518.6 gi|389846104|ref|YP_006348343.1| - 0.015 15.4 0.0 0.13 12.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3071 PF11268.8 gi|389846104|ref|YP_006348343.1| - 0.031 14.3 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) HTH_20 PF12840.7 gi|389846104|ref|YP_006348343.1| - 0.036 14.1 0.6 0.22 11.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain RepB PF07506.11 gi|389846104|ref|YP_006348343.1| - 0.037 14.1 0.0 0.065 13.3 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein Sigma70_r4_2 PF08281.12 gi|389846104|ref|YP_006348343.1| - 0.037 13.7 0.8 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|389846104|ref|YP_006348343.1| - 0.085 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 gi|389846104|ref|YP_006348343.1| - 0.095 12.6 0.0 0.3 11.0 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|389846104|ref|YP_006348343.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_38 PF13936.6 gi|389846104|ref|YP_006348343.1| - 0.11 12.2 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_35 PF13693.6 gi|389846104|ref|YP_006348343.1| - 0.11 12.5 0.0 0.3 11.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389846104|ref|YP_006348343.1| - 0.13 12.1 0.5 0.73 9.7 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain Cro PF09048.10 gi|389846104|ref|YP_006348343.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Cro TrbH PF07283.11 gi|389846104|ref|YP_006348343.1| - 0.18 12.0 0.0 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 Conjugal transfer protein TrbH MarR PF01047.22 gi|389846104|ref|YP_006348343.1| - 0.19 11.7 0.0 9.6 6.2 0.0 3.0 3 0 0 3 3 3 0 MarR family HTH_8 PF02954.19 gi|389846104|ref|YP_006348343.1| - 0.19 11.5 1.3 0.54 10.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Methyltransf_25 PF13649.6 gi|662859359|ref|YP_006348344.2| - 1.2e-16 61.1 0.0 2.7e-16 60.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|662859359|ref|YP_006348344.2| - 1.5e-16 60.8 0.0 3.5e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|662859359|ref|YP_006348344.2| - 3.5e-14 52.8 0.0 4.9e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|662859359|ref|YP_006348344.2| - 4.4e-13 49.8 0.0 7.5e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|662859359|ref|YP_006348344.2| - 3.2e-12 46.6 0.0 4.6e-12 46.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|662859359|ref|YP_006348344.2| - 2.6e-11 43.3 0.0 3.5e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|662859359|ref|YP_006348344.2| - 7e-09 35.7 0.0 1.1e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|662859359|ref|YP_006348344.2| - 6.3e-07 29.7 0.0 1e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|662859359|ref|YP_006348344.2| - 2.7e-05 23.4 0.0 4.9e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 Fibrillarin RrnaAD PF00398.20 gi|662859359|ref|YP_006348344.2| - 0.00019 20.6 0.0 0.00052 19.2 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|662859359|ref|YP_006348344.2| - 0.00023 20.7 0.0 0.00038 20.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_19 PF04672.12 gi|662859359|ref|YP_006348344.2| - 0.00026 20.6 0.0 0.0017 17.9 0.0 2.0 1 1 0 1 1 1 1 S-adenosyl methyltransferase CMAS PF02353.20 gi|662859359|ref|YP_006348344.2| - 0.00038 19.9 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|662859359|ref|YP_006348344.2| - 0.0012 18.6 0.3 0.0023 17.6 0.0 1.6 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.6 gi|662859359|ref|YP_006348344.2| - 0.0032 17.4 0.2 0.023 14.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain TPMT PF05724.11 gi|662859359|ref|YP_006348344.2| - 0.012 15.3 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltr_RsmB-F PF01189.17 gi|662859359|ref|YP_006348344.2| - 0.034 13.8 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F TP2 PF01254.18 gi|662859359|ref|YP_006348344.2| - 0.039 14.6 11.1 0.061 13.9 11.1 1.3 1 0 0 1 1 1 0 Nuclear transition protein 2 NodS PF05401.11 gi|662859359|ref|YP_006348344.2| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 1 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 gi|662859359|ref|YP_006348344.2| - 0.089 12.3 0.0 0.13 11.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Corona_nucleoca PF00937.18 gi|662859359|ref|YP_006348344.2| - 0.16 11.0 8.0 0.28 10.2 8.0 1.3 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein Methyltransf_33 PF10017.9 gi|662859359|ref|YP_006348344.2| - 0.16 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent DUF1917 PF08939.10 gi|662859359|ref|YP_006348344.2| - 0.48 10.3 2.1 0.71 9.7 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1917) SDP_N PF12278.8 gi|662859359|ref|YP_006348344.2| - 5.1 7.2 7.2 9.1 6.4 7.2 1.4 1 0 0 1 1 1 0 Sex determination protein N terminal Thi4 PF01946.17 gi|389846106|ref|YP_006348345.1| - 5.1e-59 199.4 0.4 4.2e-56 189.8 0.2 2.4 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|389846106|ref|YP_006348345.1| - 8.8e-12 45.1 0.1 1.3e-11 44.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389846106|ref|YP_006348345.1| - 5.7e-11 42.1 1.0 6.6e-08 32.0 0.7 2.2 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 gi|389846106|ref|YP_006348345.1| - 1.2e-10 41.6 1.5 8.8e-07 28.8 0.3 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|389846106|ref|YP_006348345.1| - 1.8e-10 40.6 0.1 4.5e-10 39.3 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|389846106|ref|YP_006348345.1| - 5.4e-10 39.4 0.3 1.4e-09 38.0 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|389846106|ref|YP_006348345.1| - 3.6e-08 33.0 0.0 4.4e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389846106|ref|YP_006348345.1| - 1.3e-07 30.7 0.3 1.8e-07 30.2 0.3 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|389846106|ref|YP_006348345.1| - 4.4e-06 27.2 0.3 1.4e-05 25.6 0.3 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|389846106|ref|YP_006348345.1| - 2.6e-05 23.3 0.5 0.0032 16.4 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|389846106|ref|YP_006348345.1| - 3.6e-05 23.2 0.0 5.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|389846106|ref|YP_006348345.1| - 4.2e-05 23.0 0.0 7.9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|389846106|ref|YP_006348345.1| - 0.0001 22.3 0.3 0.00021 21.3 0.3 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|389846106|ref|YP_006348345.1| - 0.00072 18.7 0.2 0.0011 18.1 0.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|389846106|ref|YP_006348345.1| - 0.0014 17.8 1.2 0.0019 17.3 0.4 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein TrkA_N PF02254.18 gi|389846106|ref|YP_006348345.1| - 0.015 15.6 0.7 0.032 14.5 0.2 1.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|389846106|ref|YP_006348345.1| - 0.022 15.2 0.1 0.041 14.3 0.1 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|389846106|ref|YP_006348345.1| - 0.03 13.6 0.5 0.19 11.0 0.0 2.3 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain YjeF_N PF03853.15 gi|389846106|ref|YP_006348345.1| - 0.046 13.6 0.4 0.42 10.5 0.0 2.4 3 0 0 3 3 3 0 YjeF-related protein N-terminus Shikimate_DH PF01488.20 gi|389846106|ref|YP_006348345.1| - 0.053 13.6 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GST_N_2 PF13409.6 gi|389846107|ref|YP_006348346.1| - 1.9e-23 82.5 0.0 3.6e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|389846107|ref|YP_006348346.1| - 3.6e-10 39.7 0.5 7e-10 38.8 0.2 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|389846107|ref|YP_006348346.1| - 5.4e-07 29.7 0.2 4.8e-06 26.7 0.1 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|389846107|ref|YP_006348346.1| - 2e-05 24.9 0.0 9.4e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 gi|389846107|ref|YP_006348346.1| - 7.3e-05 22.9 0.1 0.00014 22.0 0.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 gi|389846107|ref|YP_006348346.1| - 0.00054 19.7 0.2 0.00094 18.9 0.2 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Oxidored_molyb PF00174.19 gi|389846108|ref|YP_006348347.1| - 8e-30 103.7 0.0 1.2e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Ni_hydr_CYTB PF01292.20 gi|389846108|ref|YP_006348347.1| - 3.8 7.1 14.0 3.9 7.0 2.7 2.6 1 1 0 2 2 2 0 Prokaryotic cytochrome b561 PepSY_TM PF03929.16 gi|389846108|ref|YP_006348347.1| - 4.1 7.0 10.3 9.4 5.8 10.3 1.8 1 1 0 1 1 1 0 PepSY-associated TM region PPS_PS PF02006.16 gi|389846109|ref|YP_006348348.1| - 2e-74 248.9 3.2 2.5e-74 248.7 3.2 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase TetR PF13972.6 gi|389846109|ref|YP_006348348.1| - 0.14 11.9 0.1 0.7 9.6 0.1 1.9 2 0 0 2 2 2 0 Bacterial transcriptional repressor GHMP_kinases_N PF00288.26 gi|389846110|ref|YP_006348349.1| - 2e-10 40.7 5.5 6.3e-10 39.2 3.1 2.5 2 0 0 2 2 2 1 GHMP kinases N terminal domain SHOCT PF09851.9 gi|389846111|ref|YP_006348350.1| - 9e-10 38.0 3.9 9e-10 38.0 3.9 2.0 3 0 0 3 3 3 1 Short C-terminal domain DUF1707 PF08044.11 gi|389846111|ref|YP_006348350.1| - 1e-05 25.5 4.2 1.9e-05 24.6 4.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF2244 PF10003.9 gi|389846111|ref|YP_006348350.1| - 0.042 13.5 0.4 0.06 13.0 0.4 1.3 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) GvpG PF05120.12 gi|389846111|ref|YP_006348350.1| - 0.063 13.3 4.5 0.093 12.8 4.5 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Atg14 PF10186.9 gi|389846111|ref|YP_006348350.1| - 0.34 10.0 2.0 0.41 9.7 2.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 tRNA-synt_2 PF00152.20 gi|662859360|ref|YP_006348351.2| - 6.3e-86 288.3 0.1 7.5e-86 288.1 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|662859360|ref|YP_006348351.2| - 8.7e-14 51.3 0.2 1.5e-13 50.5 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|662859360|ref|YP_006348351.2| - 0.012 15.2 0.1 0.14 11.7 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|662859360|ref|YP_006348351.2| - 0.092 12.9 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Mediator complex subunit 30 DUF4013 PF13197.6 gi|389846113|ref|YP_006348352.1| - 1.8e-08 34.4 26.3 1.1e-07 31.8 25.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) PcrB PF01884.17 gi|389846114|ref|YP_006348353.1| - 1e-59 201.8 0.2 1.2e-59 201.5 0.2 1.0 1 0 0 1 1 1 1 PcrB family Mrr_cat PF04471.12 gi|389846115|ref|YP_006348354.1| - 2.4e-20 72.7 0.0 4.2e-20 71.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|389846115|ref|YP_006348354.1| - 2.4e-07 30.7 0.0 4.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Topoisom_bac PF01131.20 gi|389846116|ref|YP_006348355.1| - 3.9e-121 404.9 0.0 5.3e-121 404.5 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|389846116|ref|YP_006348355.1| - 4e-22 77.7 14.3 1.9e-15 56.3 0.6 4.1 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|389846116|ref|YP_006348355.1| - 4.6e-17 62.1 0.0 8.8e-17 61.2 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|389846116|ref|YP_006348355.1| - 4.7e-10 39.9 2.3 6.8e-10 39.4 0.5 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|389846116|ref|YP_006348355.1| - 0.00036 20.3 1.3 0.017 14.9 0.0 3.2 3 1 1 4 4 3 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|389846116|ref|YP_006348355.1| - 0.0024 18.1 0.0 0.0074 16.5 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|389846116|ref|YP_006348355.1| - 0.009 16.3 0.1 0.039 14.3 0.1 2.1 2 0 0 2 2 2 1 IMS family HHH motif HHH PF00633.23 gi|389846116|ref|YP_006348355.1| - 0.0098 15.7 0.3 0.045 13.6 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|389846116|ref|YP_006348355.1| - 0.016 15.5 0.0 0.035 14.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Lar_restr_allev PF14354.6 gi|389846116|ref|YP_006348355.1| - 0.037 14.4 10.8 0.18 12.2 0.5 3.4 3 1 1 4 4 4 0 Restriction alleviation protein Lar DUF1272 PF06906.11 gi|389846116|ref|YP_006348355.1| - 0.045 13.8 3.0 0.21 11.7 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) HHH_8 PF14716.6 gi|389846116|ref|YP_006348355.1| - 0.056 13.8 0.1 1.3 9.4 0.1 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain HEXIM PF15313.6 gi|389846116|ref|YP_006348355.1| - 0.073 13.3 0.1 0.18 12.0 0.1 1.6 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein TfoX_C PF04994.13 gi|389846116|ref|YP_006348355.1| - 0.19 11.9 0.0 0.44 10.7 0.0 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain zinc_ribbon_9 PF14369.6 gi|389846116|ref|YP_006348355.1| - 0.99 9.7 7.7 9.3 6.6 0.0 3.4 3 1 0 3 3 3 0 zinc-ribbon zf-IS66 PF13005.7 gi|389846116|ref|YP_006348355.1| - 1.3 9.5 5.4 14 6.1 0.2 4.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf_Rg PF17915.1 gi|389846116|ref|YP_006348355.1| - 3 7.3 5.1 2.2 7.8 0.4 2.9 3 0 0 3 3 3 0 Reverse gyrase zinc finger PhnA_Zn_Ribbon PF08274.12 gi|389846116|ref|YP_006348355.1| - 6.8 6.7 11.2 1.8 8.6 3.4 2.8 3 0 0 3 3 3 0 PhnA Zinc-Ribbon MatE PF01554.18 gi|389846117|ref|YP_006348356.1| - 2.7e-61 205.9 31.8 3.5e-38 130.8 11.1 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|389846117|ref|YP_006348356.1| - 7.4e-11 42.3 5.3 7.4e-11 42.3 5.3 5.1 3 3 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain GatB_N PF02934.15 gi|389846118|ref|YP_006348357.1| - 1.5e-101 339.4 0.0 1.9e-101 339.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|389846118|ref|YP_006348357.1| - 6.2e-41 139.7 0.0 1.1e-40 138.9 0.0 1.4 1 0 0 1 1 1 1 GatB domain SlyX PF04102.12 gi|662859361|ref|YP_006348358.2| - 0.004 17.7 2.0 0.0065 17.1 2.0 1.6 1 1 0 1 1 1 1 SlyX SOAR PF16533.5 gi|662859361|ref|YP_006348358.2| - 0.015 15.3 0.3 0.022 14.7 0.3 1.3 1 0 0 1 1 1 0 STIM1 Orai1-activating region Snapin_Pallidin PF14712.6 gi|662859361|ref|YP_006348358.2| - 0.015 15.7 0.2 0.022 15.2 0.2 1.2 1 0 0 1 1 1 0 Snapin/Pallidin TRPM_tetra PF16519.5 gi|662859361|ref|YP_006348358.2| - 0.018 15.1 1.1 0.025 14.7 1.1 1.2 1 0 0 1 1 1 0 Tetramerisation domain of TRPM bZIP_1 PF00170.21 gi|662859361|ref|YP_006348358.2| - 0.039 14.0 1.4 0.055 13.6 1.4 1.2 1 0 0 1 1 1 0 bZIP transcription factor FlaC_arch PF05377.11 gi|662859361|ref|YP_006348358.2| - 0.046 14.1 1.4 0.084 13.3 1.4 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|662859361|ref|YP_006348358.2| - 0.056 13.9 0.4 0.091 13.2 0.4 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein LPP PF04728.13 gi|662859361|ref|YP_006348358.2| - 0.071 13.5 0.2 0.13 12.6 0.2 1.5 1 0 0 1 1 1 0 Lipoprotein leucine-zipper AATF-Che1 PF13339.6 gi|662859361|ref|YP_006348358.2| - 0.094 13.4 1.4 0.11 13.2 1.4 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor CLZ PF16526.5 gi|662859361|ref|YP_006348358.2| - 0.12 12.8 0.7 0.12 12.8 0.7 1.8 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Atg14 PF10186.9 gi|662859361|ref|YP_006348358.2| - 0.12 11.5 0.1 0.12 11.4 0.1 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ZapB PF06005.12 gi|662859361|ref|YP_006348358.2| - 0.28 11.7 4.2 0.33 11.4 4.2 1.3 1 1 0 1 1 1 0 Cell division protein ZapB SMC_N PF02463.19 gi|389846120|ref|YP_006348359.1| - 5.6e-54 182.9 32.0 2.1e-53 181.0 32.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|389846120|ref|YP_006348359.1| - 2.9e-27 95.3 0.0 7e-27 94.1 0.0 1.7 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.6 gi|389846120|ref|YP_006348359.1| - 2e-13 50.8 0.2 5e-08 33.1 0.1 4.6 3 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|389846120|ref|YP_006348359.1| - 1.3e-11 43.9 85.9 5.3e-05 22.1 10.2 5.6 3 2 3 6 6 6 4 AAA domain Spc7 PF08317.11 gi|389846120|ref|YP_006348359.1| - 2e-11 43.4 120.2 0.0031 16.5 19.4 7.5 2 2 4 7 7 7 5 Spc7 kinetochore protein AAA_23 PF13476.6 gi|389846120|ref|YP_006348359.1| - 7e-09 36.5 24.1 7e-09 36.5 24.1 7.7 2 2 2 4 4 2 1 AAA domain APG6_N PF17675.1 gi|389846120|ref|YP_006348359.1| - 3.6e-08 34.0 150.7 0.008 16.7 7.4 9.5 2 2 6 9 9 9 4 Apg6 coiled-coil region DUF1664 PF07889.12 gi|389846120|ref|YP_006348359.1| - 1.5e-06 28.3 74.1 0.0012 18.8 2.0 9.8 3 2 7 10 10 10 4 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|389846120|ref|YP_006348359.1| - 3.9e-06 26.1 74.3 5.4e-06 25.6 6.3 5.7 3 2 1 4 4 4 2 Intra-flagellar transport protein 57 MscS_porin PF12795.7 gi|389846120|ref|YP_006348359.1| - 1.2e-05 25.0 90.4 0.032 13.8 3.7 6.6 3 2 4 7 7 7 3 Mechanosensitive ion channel porin domain Atg14 PF10186.9 gi|389846120|ref|YP_006348359.1| - 1.2e-05 24.5 84.0 0.021 13.9 9.6 6.8 2 2 4 7 7 7 6 Vacuolar sorting 38 and autophagy-related subunit 14 Lebercilin PF15619.6 gi|389846120|ref|YP_006348359.1| - 1.9e-05 24.5 13.1 1.9e-05 24.5 13.1 6.6 3 2 3 6 6 6 2 Ciliary protein causing Leber congenital amaurosis disease CENP-F_leu_zip PF10473.9 gi|389846120|ref|YP_006348359.1| - 4.5e-05 23.5 128.9 0.0069 16.4 18.5 7.5 2 2 4 7 7 7 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.6 gi|389846120|ref|YP_006348359.1| - 5.1e-05 22.9 0.0 0.00013 21.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain EzrA PF06160.12 gi|389846120|ref|YP_006348359.1| - 5.7e-05 21.5 31.0 0.00021 19.6 11.6 5.3 2 2 2 4 4 3 3 Septation ring formation regulator, EzrA Filament PF00038.21 gi|389846120|ref|YP_006348359.1| - 0.00017 21.3 107.3 0.01 15.4 41.1 6.2 2 2 4 6 6 6 2 Intermediate filament protein DUF724 PF05266.14 gi|389846120|ref|YP_006348359.1| - 0.00019 21.3 95.7 0.0019 18.0 10.4 8.4 2 2 5 8 8 8 4 Protein of unknown function (DUF724) Baculo_PEP_C PF04513.12 gi|389846120|ref|YP_006348359.1| - 0.00022 21.3 31.5 0.22 11.6 1.7 7.2 4 2 3 7 7 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 gi|389846120|ref|YP_006348359.1| - 0.00043 19.7 96.4 0.016 14.6 13.1 7.8 2 2 5 7 7 7 5 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|389846120|ref|YP_006348359.1| - 0.00045 20.4 105.2 0.086 13.1 5.7 11.2 3 3 7 10 10 10 4 Seryl-tRNA synthetase N-terminal domain DUF4201 PF13870.6 gi|389846120|ref|YP_006348359.1| - 0.00053 19.8 8.8 0.00053 19.8 8.8 8.2 2 2 4 7 7 7 2 Domain of unknown function (DUF4201) KASH_CCD PF14662.6 gi|389846120|ref|YP_006348359.1| - 0.00055 19.8 12.8 0.00055 19.8 12.8 6.6 2 2 4 7 7 6 2 Coiled-coil region of CCDC155 or KASH FliJ PF02050.16 gi|389846120|ref|YP_006348359.1| - 0.00079 19.6 73.2 0.0013 19.0 3.3 8.3 3 2 5 8 8 8 3 Flagellar FliJ protein Myosin_tail_1 PF01576.19 gi|389846120|ref|YP_006348359.1| - 0.00095 17.1 45.1 0.00095 17.1 45.1 4.2 2 2 2 4 4 4 1 Myosin tail Fib_alpha PF08702.10 gi|389846120|ref|YP_006348359.1| - 0.00099 19.3 58.8 0.0042 17.3 4.4 7.0 2 2 5 8 8 8 3 Fibrinogen alpha/beta chain family KELK PF15796.5 gi|389846120|ref|YP_006348359.1| - 0.0012 19.3 6.8 0.0012 19.3 6.8 10.7 3 2 9 12 12 9 1 KELK-motif containing domain of MRCK Ser/Thr protein kinase Laminin_II PF06009.12 gi|389846120|ref|YP_006348359.1| - 0.0014 18.7 5.3 0.0014 18.7 5.3 8.4 3 2 5 9 9 9 3 Laminin Domain II DUF3450 PF11932.8 gi|389846120|ref|YP_006348359.1| - 0.0017 17.7 8.9 0.0017 17.7 8.9 8.8 3 2 4 8 8 7 4 Protein of unknown function (DUF3450) TMPIT PF07851.13 gi|389846120|ref|YP_006348359.1| - 0.0053 16.1 58.7 0.24 10.6 3.9 7.0 2 2 4 7 7 7 5 TMPIT-like protein ERM PF00769.19 gi|389846120|ref|YP_006348359.1| - 0.0054 16.6 16.4 0.0054 16.6 16.4 5.3 2 2 3 5 5 5 1 Ezrin/radixin/moesin family DUF745 PF05335.13 gi|389846120|ref|YP_006348359.1| - 0.0055 16.4 3.9 0.0055 16.4 3.9 5.8 3 2 2 5 5 5 3 Protein of unknown function (DUF745) TPR_MLP1_2 PF07926.12 gi|389846120|ref|YP_006348359.1| - 0.0068 16.5 115.3 0.015 15.3 11.5 8.4 4 4 3 7 7 7 2 TPR/MLP1/MLP2-like protein ATG16 PF08614.11 gi|389846120|ref|YP_006348359.1| - 0.007 16.6 16.2 0.007 16.6 16.2 7.7 2 2 2 6 6 5 2 Autophagy protein 16 (ATG16) PspA_IM30 PF04012.12 gi|389846120|ref|YP_006348359.1| - 0.0071 15.9 12.9 0.0071 15.9 12.9 7.4 2 2 1 4 4 3 1 PspA/IM30 family Fez1 PF06818.15 gi|389846120|ref|YP_006348359.1| - 0.0073 16.8 102.6 0.024 15.1 12.8 6.9 2 2 4 6 6 5 2 Fez1 NPV_P10 PF05531.12 gi|389846120|ref|YP_006348359.1| - 0.0083 16.6 5.1 0.0083 16.6 5.1 11.7 6 3 3 10 10 9 1 Nucleopolyhedrovirus P10 protein BST2 PF16716.5 gi|389846120|ref|YP_006348359.1| - 0.012 16.2 61.8 0.079 13.6 0.1 9.3 4 4 5 9 9 9 0 Bone marrow stromal antigen 2 ABC_tran_CTD PF16326.5 gi|389846120|ref|YP_006348359.1| - 0.014 15.7 9.0 0.014 15.7 9.0 13.1 3 3 9 13 13 11 0 ABC transporter C-terminal domain Exonuc_VII_L PF02601.15 gi|389846120|ref|YP_006348359.1| - 0.014 15.0 59.8 0.12 11.9 4.0 6.0 2 2 2 4 4 3 0 Exonuclease VII, large subunit DUF4407 PF14362.6 gi|389846120|ref|YP_006348359.1| - 0.014 14.8 99.0 0.012 15.0 11.7 6.9 2 2 4 6 6 6 0 Domain of unknown function (DUF4407) ADIP PF11559.8 gi|389846120|ref|YP_006348359.1| - 0.028 14.5 90.1 0.12 12.5 5.8 9.3 3 2 8 11 11 11 0 Afadin- and alpha -actinin-Binding DUF3584 PF12128.8 gi|389846120|ref|YP_006348359.1| - 0.032 11.8 114.5 0.013 13.0 15.7 4.4 2 2 1 3 3 3 0 Protein of unknown function (DUF3584) AAA_15 PF13175.6 gi|389846120|ref|YP_006348359.1| - 0.05 13.3 49.4 0.17 11.6 27.0 5.2 2 2 1 3 3 3 0 AAA ATPase domain UPF0242 PF06785.11 gi|389846120|ref|YP_006348359.1| - 0.15 12.1 116.1 0.25 11.4 19.8 7.3 2 2 6 8 8 8 0 Uncharacterised protein family (UPF0242) N-terminus DUF5082 PF16888.5 gi|389846120|ref|YP_006348359.1| - 0.18 12.1 90.7 0.019 15.3 10.7 9.5 4 3 5 10 10 9 0 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|389846120|ref|YP_006348359.1| - 0.21 12.0 0.1 0.21 12.0 0.1 13.3 10 4 3 13 13 12 0 Flagella accessory protein C (FlaC) FPP PF05911.11 gi|389846120|ref|YP_006348359.1| - 0.34 9.1 94.2 0.022 13.0 10.6 5.4 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil DUF2721 PF11026.8 gi|389846120|ref|YP_006348359.1| - 0.59 10.0 6.2 1.2 9.0 1.2 3.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) HMMR_N PF15905.5 gi|389846120|ref|YP_006348359.1| - 0.96 8.8 104.1 0.26 10.7 18.0 6.0 2 2 4 6 6 6 0 Hyaluronan mediated motility receptor N-terminal DUF4200 PF13863.6 gi|389846120|ref|YP_006348359.1| - 2.7 8.4 123.0 0.015 15.7 8.6 10.1 2 2 8 10 10 10 0 Domain of unknown function (DUF4200) FliD_N PF02465.18 gi|389846120|ref|YP_006348359.1| - 8.3 7.2 30.1 7.8 7.3 0.2 8.2 2 2 4 8 8 7 0 Flagellar hook-associated protein 2 N-terminus SMC_ScpA PF02616.14 gi|389846121|ref|YP_006348360.1| - 9e-15 55.2 0.1 3.6e-10 40.2 0.0 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA PNP_UDP_1 PF01048.20 gi|389846123|ref|YP_006348362.1| - 6e-44 150.0 0.0 7e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Extensin-like_C PF06904.12 gi|389846123|ref|YP_006348362.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Extensin-like protein C-terminus Mem_trans PF03547.18 gi|662859362|ref|YP_006348363.2| - 4.4e-23 81.3 22.8 2.4e-13 49.3 1.4 2.0 1 1 1 2 2 2 2 Membrane transport protein Pribosyltran PF00156.27 gi|389846125|ref|YP_006348364.1| - 1.9e-16 60.0 0.0 2.8e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389846125|ref|YP_006348364.1| - 0.016 14.6 0.0 0.021 14.3 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Zn-ribbon_8 PF09723.10 gi|389846126|ref|YP_006348365.1| - 0.024 14.8 0.6 0.036 14.2 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain PhzC-PhzF PF02567.16 gi|389846127|ref|YP_006348366.1| - 3.4e-63 213.8 0.1 3.9e-63 213.6 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|389846127|ref|YP_006348366.1| - 3e-05 24.2 0.0 0.0072 16.5 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase PAC2 PF09754.9 gi|389846128|ref|YP_006348367.1| - 7.8e-51 173.1 0.2 9.4e-51 172.8 0.2 1.0 1 0 0 1 1 1 1 PAC2 family DUF4140 PF13600.6 gi|389846128|ref|YP_006348367.1| - 0.11 12.9 0.5 0.28 11.6 0.5 1.6 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Nop10p PF04135.12 gi|389846129|ref|YP_006348368.1| - 2.9e-22 78.4 2.8 3.2e-22 78.3 2.8 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.6 gi|389846129|ref|YP_006348368.1| - 0.047 13.1 0.6 0.084 12.3 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|389846129|ref|YP_006348368.1| - 0.69 9.9 4.8 3.7 7.6 0.7 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 EIF_2_alpha PF07541.12 gi|389846130|ref|YP_006348369.1| - 9.5e-25 87.0 0.0 2e-24 85.9 0.0 1.5 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|389846130|ref|YP_006348369.1| - 1.1e-12 48.1 1.5 1.9e-12 47.3 0.7 1.9 2 0 0 2 2 2 1 S1 RNA binding domain DUF1494 PF07379.11 gi|389846130|ref|YP_006348369.1| - 0.17 11.7 0.1 0.34 10.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1494) cwf21 PF08312.12 gi|389846130|ref|YP_006348369.1| - 0.23 11.7 2.7 0.3 11.3 0.2 2.4 3 0 0 3 3 3 0 cwf21 domain Ribosomal_S27e PF01667.17 gi|389846131|ref|YP_006348370.1| - 1.3e-18 66.4 0.7 1.5e-18 66.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|389846131|ref|YP_006348370.1| - 0.03 14.1 0.8 0.043 13.5 0.8 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|389846131|ref|YP_006348370.1| - 0.042 14.0 0.6 0.042 14.0 0.6 1.5 2 0 0 2 2 2 0 Zinc ribbon domain DUF1586 PF07625.11 gi|389846131|ref|YP_006348370.1| - 0.1 12.6 0.1 0.16 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1586) Ribosomal_L44 PF00935.19 gi|389846132|ref|YP_006348371.1| - 8e-24 83.9 2.0 1e-23 83.6 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|389846132|ref|YP_006348371.1| - 0.0094 15.3 1.7 3.1 7.3 0.6 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389846132|ref|YP_006348371.1| - 0.024 14.1 1.2 5.2 6.7 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|389846132|ref|YP_006348371.1| - 0.062 13.2 3.2 6.2 6.8 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf_Rg PF17915.1 gi|389846132|ref|YP_006348371.1| - 0.12 11.8 0.8 0.16 11.4 0.1 1.6 2 0 0 2 2 2 0 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|389846132|ref|YP_006348371.1| - 0.23 11.6 2.8 13 6.0 0.4 2.5 2 1 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|389846132|ref|YP_006348371.1| - 0.29 11.2 5.3 0.61 10.2 5.3 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|389846132|ref|YP_006348371.1| - 0.4 10.5 5.8 3.4 7.5 1.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.24 gi|389846132|ref|YP_006348371.1| - 0.54 10.5 7.6 5.9 7.1 2.6 2.1 2 0 0 2 2 2 0 B-box zinc finger DUF2298 PF10060.9 gi|389846134|ref|YP_006348373.1| - 1.7e-139 465.8 29.6 2.4e-139 465.3 29.6 1.2 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.26 gi|662859363|ref|YP_006348374.2| - 2.8e-08 33.8 1.7 9.3e-08 32.1 0.4 2.3 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|662859363|ref|YP_006348374.2| - 0.02 14.8 1.2 0.025 14.5 1.2 1.3 1 1 0 1 1 1 0 Glycosyltransferase like family 2 GtrA PF04138.14 gi|389846136|ref|YP_006348375.1| - 3.4e-18 66.0 1.8 4.6e-18 65.6 1.8 1.2 1 0 0 1 1 1 1 GtrA-like protein Polysacc_synt_C PF14667.6 gi|389846136|ref|YP_006348375.1| - 1.2 9.2 7.2 3.1 7.9 7.2 1.9 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain Rieske PF00355.26 gi|389846137|ref|YP_006348376.1| - 2.9e-08 33.5 0.1 3.8e-08 33.2 0.1 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2318 PF10080.9 gi|389846137|ref|YP_006348376.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Aminotran_4 PF01063.19 gi|389846138|ref|YP_006348377.1| - 2.8e-57 194.2 0.0 3.2e-57 194.0 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV GATase PF00117.28 gi|389846139|ref|YP_006348378.1| - 7.3e-43 146.6 0.0 1e-30 106.9 0.0 2.0 2 0 0 2 2 2 2 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|389846139|ref|YP_006348378.1| - 5.3e-06 26.3 0.0 8.6e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 NOA36 PF06524.12 gi|389846139|ref|YP_006348378.1| - 9.4 5.4 5.8 14 4.8 5.8 1.2 1 0 0 1 1 1 0 NOA36 protein Chorismate_bind PF00425.18 gi|389846141|ref|YP_006348380.1| - 2.3e-100 335.4 0.0 3.2e-100 335.0 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|389846141|ref|YP_006348380.1| - 2.2e-09 37.7 0.0 4.6e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region Arm-DNA-bind_3 PF13356.6 gi|389846141|ref|YP_006348380.1| - 0.12 12.7 0.1 1 9.8 0.0 2.6 2 0 0 2 2 2 0 Arm DNA-binding domain HHH_5 PF14520.6 gi|389846142|ref|YP_006348381.1| - 3e-08 34.1 1.3 5.3e-08 33.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|389846142|ref|YP_006348381.1| - 0.00099 19.3 0.0 0.0019 18.4 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|389846142|ref|YP_006348381.1| - 0.012 15.9 0.0 0.074 13.3 0.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|389846142|ref|YP_006348381.1| - 0.069 13.0 0.0 0.18 11.7 0.0 1.6 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda HTH_23 PF13384.6 gi|389846142|ref|YP_006348381.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Mitofilin PF09731.9 gi|389846142|ref|YP_006348381.1| - 2.8 6.7 37.6 3.9 6.2 37.6 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF1993 PF09351.10 gi|389846142|ref|YP_006348381.1| - 7.4 6.7 6.7 16 5.6 6.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) Shikimate_dh_N PF08501.11 gi|389846143|ref|YP_006348382.1| - 1.7e-27 95.4 0.1 4.2e-27 94.2 0.0 1.7 2 0 0 2 2 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|389846143|ref|YP_006348382.1| - 4.3e-11 42.4 0.6 9.9e-11 41.2 0.6 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|389846143|ref|YP_006348382.1| - 8e-08 32.4 0.1 1.3e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|389846143|ref|YP_006348382.1| - 5.3e-05 22.6 0.1 7.6e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FAD_binding_2 PF00890.24 gi|389846143|ref|YP_006348382.1| - 0.0011 18.1 6.3 0.0017 17.5 6.3 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|389846143|ref|YP_006348382.1| - 0.012 14.9 1.0 0.017 14.4 1.0 1.2 1 0 0 1 1 1 0 FAD binding domain IlvN PF07991.12 gi|389846143|ref|YP_006348382.1| - 0.013 15.0 0.2 0.021 14.4 0.2 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_2 PF07992.14 gi|389846143|ref|YP_006348382.1| - 0.018 14.3 2.3 0.025 13.8 2.3 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389846143|ref|YP_006348382.1| - 0.02 14.0 6.3 0.026 13.6 6.3 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Sacchrp_dh_NADP PF03435.18 gi|389846143|ref|YP_006348382.1| - 0.03 14.6 0.2 0.07 13.4 0.2 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_3 PF13738.6 gi|389846143|ref|YP_006348382.1| - 0.032 13.5 0.2 0.058 12.6 0.2 1.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|389846143|ref|YP_006348382.1| - 0.037 14.1 0.8 0.063 13.3 0.8 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.25 gi|389846143|ref|YP_006348382.1| - 0.039 13.4 1.5 0.056 12.9 1.5 1.3 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|389846143|ref|YP_006348382.1| - 0.044 13.4 1.2 0.076 12.7 1.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|389846143|ref|YP_006348382.1| - 0.063 13.5 2.8 0.13 12.5 2.8 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|389846143|ref|YP_006348382.1| - 0.093 12.1 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389846143|ref|YP_006348382.1| - 0.11 13.0 0.1 0.18 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|389846143|ref|YP_006348382.1| - 0.2 10.9 3.6 0.33 10.2 3.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|389846143|ref|YP_006348382.1| - 0.21 10.9 0.4 0.35 10.2 0.4 1.3 1 0 0 1 1 1 0 ThiF family 3HCDH_N PF02737.18 gi|389846143|ref|YP_006348382.1| - 0.24 11.3 1.4 0.34 10.8 1.4 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|389846143|ref|YP_006348382.1| - 3.4 6.2 5.3 4.5 5.9 5.3 1.2 1 0 0 1 1 1 0 HI0933-like protein Na_Ca_ex PF01699.24 gi|389846144|ref|YP_006348383.1| - 1.6e-43 148.2 38.3 4.4e-24 85.2 13.4 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Arteri_Gl PF00951.18 gi|389846144|ref|YP_006348383.1| - 1.5 8.6 5.3 5.5 6.8 0.1 2.8 2 2 0 2 2 2 0 Arterivirus GL envelope glycoprotein Na_Ca_ex PF01699.24 gi|389846145|ref|YP_006348384.1| - 1.4e-17 64.0 29.5 1.2e-09 38.3 8.9 2.6 3 0 0 3 3 3 2 Sodium/calcium exchanger protein tRNA_deacylase PF04414.12 gi|389846146|ref|YP_006348385.1| - 6.2e-63 212.0 0.0 8.5e-63 211.6 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DNA_Packaging PF11053.8 gi|389846146|ref|YP_006348385.1| - 0.011 15.5 0.1 0.025 14.4 0.1 1.5 1 0 0 1 1 1 0 Terminase DNA packaging enzyme zf-CCHC PF00098.23 gi|389846146|ref|YP_006348385.1| - 0.025 14.6 0.1 0.025 14.6 0.1 2.4 3 0 0 3 3 3 0 Zinc knuckle Filo_VP35 PF02097.15 gi|389846146|ref|YP_006348385.1| - 0.084 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Filoviridae VP35 Tubulin PF00091.25 gi|389846147|ref|YP_006348386.1| - 4.2e-42 144.6 0.8 6.1e-42 144.0 0.8 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|389846147|ref|YP_006348386.1| - 4.1e-37 126.4 1.6 1.5e-36 124.5 1.6 2.0 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|389846147|ref|YP_006348386.1| - 0.0033 17.3 2.6 0.0062 16.5 0.1 2.3 2 1 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|389846147|ref|YP_006348386.1| - 0.02 14.1 8.3 0.036 13.2 2.0 2.6 1 1 0 2 2 2 0 Tubulin like EF-hand_1 PF00036.32 gi|389846147|ref|YP_006348386.1| - 0.7 9.6 0.1 0.7 9.6 0.1 2.4 4 0 0 4 4 4 0 EF hand SecE PF00584.20 gi|389846148|ref|YP_006348387.1| - 2e-05 24.4 0.1 2.5e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|389846149|ref|YP_006348388.1| - 9.5e-22 76.7 0.0 1.6e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|389846149|ref|YP_006348388.1| - 3e-08 33.3 0.6 8.2e-08 31.9 0.2 2.0 2 0 0 2 2 2 1 KOW motif Glyco_hydro_65C PF03633.15 gi|389846149|ref|YP_006348388.1| - 0.057 13.3 0.5 0.097 12.6 0.5 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain NusG PF02357.19 gi|389846149|ref|YP_006348388.1| - 0.13 12.7 0.0 0.44 11.1 0.0 1.9 1 1 0 1 1 1 0 Transcription termination factor nusG DUF4157 PF13699.6 gi|662859364|ref|YP_006348389.2| - 0.0044 17.2 0.3 0.0066 16.7 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) FYVE PF01363.21 gi|662859364|ref|YP_006348389.2| - 0.0083 16.2 0.2 0.0096 16.0 0.2 1.3 1 0 0 1 1 1 1 FYVE zinc finger Nudix_N_2 PF14803.6 gi|662859364|ref|YP_006348389.2| - 0.035 14.0 0.9 0.065 13.2 0.3 1.8 2 0 0 2 2 2 0 Nudix N-terminal PHP_C PF13263.6 gi|662859365|ref|YP_006348390.2| - 4.9e-18 64.6 0.2 1e-17 63.6 0.2 1.6 1 0 0 1 1 1 1 PHP-associated YdjM PF04307.14 gi|662859366|ref|YP_006348391.2| - 7.8e-12 44.8 3.8 7.8e-11 41.6 3.8 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|662859366|ref|YP_006348391.2| - 0.024 14.6 0.5 0.052 13.6 0.5 1.4 1 1 0 1 1 1 0 Zinc dependent phospholipase C CinA PF02464.17 gi|389846153|ref|YP_006348392.1| - 1.9e-55 186.7 0.0 2.3e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Competence-damaged protein ArsA_ATPase PF02374.15 gi|389846154|ref|YP_006348393.1| - 1.4e-76 257.6 0.0 7.6e-52 176.4 0.0 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|389846154|ref|YP_006348393.1| - 9e-08 32.2 0.0 1.5e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|389846154|ref|YP_006348393.1| - 3.2e-07 30.4 0.1 1.3e-05 25.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|389846154|ref|YP_006348393.1| - 0.0002 20.9 2.8 0.0023 17.4 0.0 2.8 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|389846154|ref|YP_006348393.1| - 0.0021 17.6 0.9 0.07 12.7 0.1 2.9 3 0 0 3 3 3 1 AAA domain SRP54 PF00448.22 gi|389846154|ref|YP_006348393.1| - 0.0037 16.9 0.1 0.25 10.9 0.3 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|389846154|ref|YP_006348393.1| - 0.0099 15.4 0.1 0.022 14.2 0.0 1.5 2 0 0 2 2 2 1 PhoH-like protein CBP_BcsQ PF06564.12 gi|389846154|ref|YP_006348393.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|389846154|ref|YP_006348393.1| - 0.019 14.4 0.1 0.033 13.6 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Zeta_toxin PF06414.12 gi|389846154|ref|YP_006348393.1| - 0.064 12.5 0.1 0.14 11.4 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 gi|389846154|ref|YP_006348393.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase PF06745.13 gi|389846154|ref|YP_006348393.1| - 0.13 11.6 0.0 0.34 10.2 0.0 1.6 2 0 0 2 2 2 0 KaiC adh_short PF00106.25 gi|389846155|ref|YP_006348394.1| - 2.2e-50 170.9 0.0 2.7e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389846155|ref|YP_006348394.1| - 6.2e-39 133.9 0.0 8.2e-39 133.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|389846155|ref|YP_006348394.1| - 5e-11 42.8 0.0 7.3e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|389846155|ref|YP_006348394.1| - 2.6e-06 27.0 0.0 5.6e-06 25.9 0.0 1.5 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|389846155|ref|YP_006348394.1| - 1.9e-05 24.2 0.0 0.00015 21.4 0.0 2.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|389846155|ref|YP_006348394.1| - 0.0025 16.9 0.0 0.0039 16.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Endonuclease_5 PF04493.14 gi|389846156|ref|YP_006348395.1| - 1.9e-53 181.1 0.0 2.5e-53 180.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|389846156|ref|YP_006348395.1| - 0.02 14.3 0.2 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF99 Rhomboid PF01694.22 gi|389846157|ref|YP_006348396.1| - 3.2e-32 111.6 16.7 3.2e-32 111.6 16.7 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|389846157|ref|YP_006348396.1| - 2e-12 47.1 6.0 2.7e-12 46.7 6.0 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|389846157|ref|YP_006348396.1| - 2.5e-05 24.8 1.2 2.5e-05 24.8 1.2 1.7 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.16 gi|389846157|ref|YP_006348396.1| - 0.0014 18.4 3.8 0.0021 17.9 3.8 1.2 1 0 0 1 1 1 1 HIT zinc finger C1_2 PF03107.16 gi|389846157|ref|YP_006348396.1| - 0.23 11.8 3.8 0.37 11.2 3.8 1.3 1 0 0 1 1 1 0 C1 domain zf-MYND PF01753.18 gi|389846157|ref|YP_006348396.1| - 0.28 11.3 4.3 0.43 10.7 4.3 1.2 1 0 0 1 1 1 0 MYND finger zf-C2H2_4 PF13894.6 gi|389846157|ref|YP_006348396.1| - 5.6 8.1 6.6 2.7 9.0 2.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Pyrophosphatase PF00719.19 gi|389846158|ref|YP_006348397.1| - 3.3e-52 176.5 1.4 3.7e-52 176.3 1.4 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.14 gi|389846159|ref|YP_006348398.1| - 6e-18 64.6 0.6 8.4e-18 64.1 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389846159|ref|YP_006348398.1| - 8.6e-05 23.0 0.0 0.00014 22.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389846159|ref|YP_006348398.1| - 0.0037 17.0 0.0 0.0063 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|389846159|ref|YP_006348398.1| - 0.0071 16.3 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix RTP PF02334.16 gi|389846159|ref|YP_006348398.1| - 0.031 14.9 0.1 0.043 14.4 0.1 1.3 1 0 0 1 1 1 0 Replication terminator protein FUR PF01475.19 gi|389846159|ref|YP_006348398.1| - 0.047 13.8 0.0 0.063 13.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family PMM PF03332.13 gi|389846159|ref|YP_006348398.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic phosphomannomutase HTH_34 PF13601.6 gi|389846159|ref|YP_006348398.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain RVT_3 PF13456.6 gi|389846161|ref|YP_006348400.1| - 2.5e-28 98.4 0.0 3.2e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|389846161|ref|YP_006348400.1| - 4e-15 56.2 0.0 7.7e-15 55.3 0.0 1.4 1 1 0 1 1 1 1 RNase H ChitinaseA_N PF08329.10 gi|389846161|ref|YP_006348400.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Chitinase A, N-terminal domain Mac PF12464.8 gi|389846161|ref|YP_006348400.1| - 0.13 12.5 0.2 0.27 11.5 0.2 1.5 1 0 0 1 1 1 0 Maltose acetyltransferase TFIIB PF00382.19 gi|389846162|ref|YP_006348401.1| - 1.7e-45 152.9 2.1 1.7e-24 85.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|389846162|ref|YP_006348401.1| - 0.0063 16.0 0.1 0.013 15.0 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|389846162|ref|YP_006348401.1| - 0.015 15.4 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|389846162|ref|YP_006348401.1| - 0.059 12.9 3.2 0.22 11.1 0.1 3.4 3 1 1 4 4 4 0 Sigma-70, region 4 HARE-HTH PF05066.13 gi|389846162|ref|YP_006348401.1| - 0.064 13.7 0.0 1.8 9.0 0.0 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain HTH_23 PF13384.6 gi|389846162|ref|YP_006348401.1| - 0.08 12.8 0.3 0.78 9.6 0.1 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_3 PF01381.22 gi|389846162|ref|YP_006348401.1| - 0.12 12.5 0.3 4.4 7.5 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix TrmB PF01978.19 gi|389846162|ref|YP_006348401.1| - 0.66 9.9 2.5 6.4 6.8 0.1 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Nre_N PF04894.12 gi|662859367|ref|YP_006348402.2| - 2.8e-97 325.8 0.0 3.3e-97 325.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|662859367|ref|YP_006348402.2| - 1.2e-36 124.9 0.0 1.9e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF302 PF03625.14 gi|389846165|ref|YP_006348404.1| - 5.7e-17 61.4 0.0 9.5e-17 60.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 GrpB PF04229.14 gi|389846166|ref|YP_006348405.1| - 6.4e-46 156.5 0.0 7.3e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 GrpB protein CPBP PF02517.16 gi|389846167|ref|YP_006348406.1| - 2.3e-06 27.9 4.2 3.1e-06 27.5 0.2 2.3 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease Virul_fac_BrkB PF03631.15 gi|389846169|ref|YP_006348408.1| - 0.023 14.3 7.8 0.058 13.0 8.0 1.6 1 1 0 1 1 1 0 Virulence factor BrkB Mut7-C PF01927.16 gi|389846170|ref|YP_006348409.1| - 1.1e-40 139.1 0.0 1.2e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|389846170|ref|YP_006348409.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) zf-UBP PF02148.19 gi|389846170|ref|YP_006348409.1| - 0.071 13.4 0.4 0.11 12.9 0.4 1.2 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein DNA_pol_B_thumb PF14791.6 gi|389846171|ref|YP_006348410.1| - 3e-20 72.1 0.0 9.3e-20 70.6 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|389846171|ref|YP_006348410.1| - 1.9e-17 63.4 4.0 2.1e-15 56.8 0.4 3.7 3 1 1 4 4 4 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|389846171|ref|YP_006348410.1| - 1e-13 51.7 1.5 3.6e-11 43.5 0.2 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.19 gi|389846171|ref|YP_006348410.1| - 2.3e-06 28.0 0.0 5.7e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 PHP domain HHH_2 PF12826.7 gi|389846171|ref|YP_006348410.1| - 2.7e-05 24.2 1.0 0.0069 16.5 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|389846171|ref|YP_006348410.1| - 0.00042 20.5 0.1 0.0024 18.1 0.0 2.3 3 0 0 3 3 3 1 DNA polymerase beta palm RNase_P_p30 PF01876.16 gi|389846171|ref|YP_006348410.1| - 0.00094 18.7 0.0 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 RNase P subunit p30 DNA_pol_lambd_f PF10391.9 gi|389846171|ref|YP_006348410.1| - 0.0025 17.6 0.0 0.0092 15.8 0.0 2.0 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|389846171|ref|YP_006348410.1| - 0.0031 17.3 0.1 0.015 15.1 0.1 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif Phosphodiest PF01663.22 gi|662859368|ref|YP_006348412.2| - 5.2e-61 207.2 0.2 6e-61 207.0 0.2 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|662859368|ref|YP_006348412.2| - 0.0038 16.7 2.0 0.014 14.8 0.7 2.3 3 0 0 3 3 3 1 Sulfatase DUF2063 PF09836.9 gi|662859368|ref|YP_006348412.2| - 0.07 13.4 0.9 0.3 11.3 0.2 2.1 2 0 0 2 2 2 0 Putative DNA-binding domain Aurora-A_bind PF09041.10 gi|662859368|ref|YP_006348412.2| - 1.1 9.4 2.9 11 6.2 0.0 3.0 3 0 0 3 3 3 0 Aurora-A binding Tubulin PF00091.25 gi|389846174|ref|YP_006348413.1| - 6.5e-25 88.5 0.4 2.5e-24 86.6 0.4 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|389846174|ref|YP_006348413.1| - 0.00069 18.9 0.2 0.0012 18.1 0.2 1.4 1 0 0 1 1 1 1 Tubulin like Sua5_yciO_yrdC PF01300.18 gi|389846174|ref|YP_006348413.1| - 0.087 12.3 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Telomere recombination NPV_P10 PF05531.12 gi|389846175|ref|YP_006348414.1| - 0.015 15.8 0.5 0.29 11.6 0.1 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1515 PF07439.11 gi|389846175|ref|YP_006348414.1| - 0.02 14.9 1.5 3.9 7.5 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) BLOC1_2 PF10046.9 gi|389846175|ref|YP_006348414.1| - 0.026 14.8 0.1 0.047 14.0 0.1 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|389846175|ref|YP_006348414.1| - 0.17 11.9 0.1 0.34 10.9 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) CLZ PF16526.5 gi|389846175|ref|YP_006348414.1| - 0.39 11.1 3.4 0.42 11.0 0.2 2.6 2 2 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ABC_tran_CTD PF16326.5 gi|389846175|ref|YP_006348414.1| - 2 8.7 6.2 0.64 10.3 0.3 2.6 2 1 0 2 2 2 0 ABC transporter C-terminal domain CCDC53 PF10152.9 gi|389846175|ref|YP_006348414.1| - 2.1 8.7 7.8 3.8 7.9 7.8 1.5 1 1 0 1 1 1 0 Subunit CCDC53 of WASH complex XhlA PF10779.9 gi|389846175|ref|YP_006348414.1| - 2.7 8.3 10.1 2.7 8.3 0.2 3.1 2 1 0 3 3 3 0 Haemolysin XhlA DUF4407 PF14362.6 gi|389846175|ref|YP_006348414.1| - 3.7 6.8 22.1 7.4 5.8 0.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) T2SSE PF00437.20 gi|389846176|ref|YP_006348415.1| - 6.8e-30 104.0 0.0 1.1e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|389846176|ref|YP_006348415.1| - 0.0005 20.5 0.2 0.0005 20.5 0.2 2.3 2 1 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|389846176|ref|YP_006348415.1| - 0.0026 18.3 0.0 0.0045 17.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 gi|389846176|ref|YP_006348415.1| - 0.031 14.5 0.1 0.13 12.4 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|389846176|ref|YP_006348415.1| - 0.049 13.1 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|389846176|ref|YP_006348415.1| - 0.077 12.3 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.18 gi|389846176|ref|YP_006348415.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ptaRNA1_toxin PF12703.7 gi|389846177|ref|YP_006348416.1| - 0.025 14.6 0.1 0.055 13.5 0.1 1.6 1 0 0 1 1 1 0 Toxin of toxin-antitoxin type 1 system DUF4781 PF16013.5 gi|389846177|ref|YP_006348416.1| - 1.1 8.0 9.1 0.13 11.1 2.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4781) NAD_binding_10 PF13460.6 gi|389846183|ref|YP_006348422.1| - 1.1e-15 58.0 0.2 1.6e-15 57.5 0.2 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|389846183|ref|YP_006348422.1| - 1.5e-14 54.1 0.0 2.5e-14 53.4 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389846183|ref|YP_006348422.1| - 6.1e-09 35.3 0.0 3.9e-08 32.6 0.0 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|389846183|ref|YP_006348422.1| - 3.5e-07 30.5 0.4 9.4e-07 29.1 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|389846183|ref|YP_006348422.1| - 3.6e-07 29.9 0.0 3.2e-06 26.8 0.0 2.2 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase F420_oxidored PF03807.17 gi|389846183|ref|YP_006348422.1| - 0.00021 21.8 0.0 0.00047 20.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|389846183|ref|YP_006348422.1| - 0.0006 19.4 0.1 0.0011 18.6 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|389846183|ref|YP_006348422.1| - 0.0012 18.5 0.1 0.0019 17.8 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA RmlD_sub_bind PF04321.17 gi|389846183|ref|YP_006348422.1| - 0.0013 17.9 0.2 0.014 14.5 0.2 2.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_2 PF03446.15 gi|389846183|ref|YP_006348422.1| - 0.0022 18.2 0.0 0.0035 17.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|389846183|ref|YP_006348422.1| - 0.0061 17.1 0.1 0.013 16.0 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.13 gi|389846183|ref|YP_006348422.1| - 0.011 15.3 0.2 0.016 14.8 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family 3HCDH_N PF02737.18 gi|389846183|ref|YP_006348422.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|389846183|ref|YP_006348422.1| - 0.045 13.0 0.4 0.072 12.4 0.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1731 PF08338.11 gi|389846183|ref|YP_006348422.1| - 0.051 13.4 0.0 0.29 11.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1731) adh_short_C2 PF13561.6 gi|389846183|ref|YP_006348422.1| - 0.069 12.7 0.2 0.13 11.8 0.2 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|389846183|ref|YP_006348422.1| - 0.078 13.2 0.1 0.16 12.2 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|389846183|ref|YP_006348422.1| - 0.088 12.0 0.1 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.25 gi|389846183|ref|YP_006348422.1| - 0.11 12.0 0.1 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase DHH PF01368.20 gi|662859370|ref|YP_006348423.2| - 1.8e-09 37.7 0.1 2.9e-09 37.1 0.1 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|662859370|ref|YP_006348423.2| - 2.4e-09 37.7 0.6 5.3e-09 36.6 0.3 1.7 2 0 0 2 2 2 1 DHHA1 domain SKG6 PF08693.10 gi|662859370|ref|YP_006348423.2| - 0.0012 18.2 0.5 0.0012 18.2 0.5 2.4 3 0 0 3 3 3 1 Transmembrane alpha-helix domain Aldo_ket_red PF00248.21 gi|389846185|ref|YP_006348424.1| - 2.2e-26 92.7 0.0 4.9e-20 71.9 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family DZR PF12773.7 gi|389846186|ref|YP_006348425.1| - 0.00033 20.6 0.5 0.0004 20.4 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|389846186|ref|YP_006348425.1| - 0.014 15.4 0.6 0.014 15.4 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|389846186|ref|YP_006348425.1| - 0.016 14.6 1.4 1 8.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|389846186|ref|YP_006348425.1| - 0.026 14.5 2.2 0.061 13.3 2.2 1.5 1 1 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|389846186|ref|YP_006348425.1| - 0.03 14.2 1.7 0.12 12.3 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal ADK_lid PF05191.14 gi|389846186|ref|YP_006348425.1| - 0.032 14.2 1.2 1.8 8.7 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C3HC4_3 PF13920.6 gi|389846186|ref|YP_006348425.1| - 0.035 14.0 0.9 0.053 13.4 0.9 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf_UBZ PF18439.1 gi|389846186|ref|YP_006348425.1| - 0.056 13.0 3.0 0.5 10.0 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-HYPF PF07503.12 gi|389846186|ref|YP_006348425.1| - 0.067 13.0 2.9 1.8 8.4 0.7 2.2 2 0 0 2 2 2 0 HypF finger PhnA_Zn_Ribbon PF08274.12 gi|389846186|ref|YP_006348425.1| - 0.084 12.9 2.1 1.3 9.1 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon CxC7 PF18866.1 gi|389846186|ref|YP_006348425.1| - 0.12 12.6 1.4 2 8.6 0.1 2.1 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases zf-C2H2_4 PF13894.6 gi|389846186|ref|YP_006348425.1| - 0.13 13.2 1.7 11 7.2 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.19 gi|389846186|ref|YP_006348425.1| - 0.14 12.0 2.8 3.1 7.6 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2 PF00096.26 gi|389846186|ref|YP_006348425.1| - 0.18 12.3 4.3 1 10.0 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type CpXC PF14353.6 gi|389846186|ref|YP_006348425.1| - 0.21 11.7 2.7 1.6 8.8 0.2 2.0 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|389846186|ref|YP_006348425.1| - 0.25 11.3 3.1 0.53 10.2 3.0 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|389846186|ref|YP_006348425.1| - 0.34 10.7 5.5 8.2 6.3 5.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|389846186|ref|YP_006348425.1| - 0.49 10.6 5.1 1.7 8.8 5.0 1.8 1 1 1 2 2 2 0 Zinc ribbon domain MFS_1 PF07690.16 gi|662859371|ref|YP_006348426.2| - 1.3e-37 129.6 51.8 7.6e-29 100.7 29.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|662859371|ref|YP_006348426.2| - 4.1e-05 22.6 11.5 0.00014 20.9 11.5 1.8 1 1 0 1 1 1 1 MFS_1 like family DUF1056 PF06341.11 gi|662859371|ref|YP_006348426.2| - 0.32 11.3 7.0 0.99 9.8 2.0 3.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) DUF1421 PF07223.11 gi|389846189|ref|YP_006348428.1| - 0.053 13.4 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 UBA-like domain (DUF1421) NUDIX PF00293.28 gi|389846191|ref|YP_006348430.1| - 3.1e-14 53.1 0.0 4.5e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain DoxX PF07681.12 gi|389846192|ref|YP_006348431.1| - 1.9e-08 34.8 9.8 1.9e-08 34.8 9.8 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|389846192|ref|YP_006348431.1| - 0.00028 20.8 4.5 0.00057 19.8 4.5 1.5 1 1 0 1 1 1 1 TQO small subunit DoxD Bac_luciferase PF00296.20 gi|389846193|ref|YP_006348432.1| - 0.053 12.9 4.9 0.12 11.8 4.9 1.7 1 1 0 1 1 1 0 Luciferase-like monooxygenase DAO PF01266.24 gi|389846194|ref|YP_006348433.1| - 4.8e-53 181.0 6.5 5.5e-53 180.8 6.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389846194|ref|YP_006348433.1| - 8.9e-10 38.3 0.0 2.2e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389846194|ref|YP_006348433.1| - 6.1e-07 29.6 0.6 1.3e-06 28.5 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|389846194|ref|YP_006348433.1| - 1.2e-06 27.9 0.8 1.7e-06 27.4 0.8 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|389846194|ref|YP_006348433.1| - 7.1e-06 26.5 0.1 7.1e-05 23.3 0.1 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389846194|ref|YP_006348433.1| - 9.9e-06 24.5 0.1 0.00064 18.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|389846194|ref|YP_006348433.1| - 8.9e-05 22.5 1.0 0.018 15.0 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding ApbA PF02558.16 gi|389846194|ref|YP_006348433.1| - 0.00013 21.7 0.0 0.00025 20.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|389846194|ref|YP_006348433.1| - 0.0005 19.4 0.0 0.00078 18.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|389846194|ref|YP_006348433.1| - 0.00076 18.8 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.18 gi|389846194|ref|YP_006348433.1| - 0.00083 19.3 0.1 0.0015 18.4 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389846194|ref|YP_006348433.1| - 0.003 18.0 0.1 0.0063 16.9 0.1 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|389846194|ref|YP_006348433.1| - 0.0033 17.0 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.7 gi|389846194|ref|YP_006348433.1| - 0.0072 15.7 0.1 0.042 13.2 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|389846194|ref|YP_006348433.1| - 0.0083 15.2 0.1 0.011 14.8 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|389846194|ref|YP_006348433.1| - 0.017 14.5 0.2 0.61 9.3 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|389846194|ref|YP_006348433.1| - 0.026 13.8 0.0 0.046 13.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389846194|ref|YP_006348433.1| - 0.033 13.5 0.1 0.051 12.9 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|389846194|ref|YP_006348433.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HSP20 PF00011.21 gi|389846195|ref|YP_006348434.1| - 3.1e-05 24.1 0.0 6.7e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Hsp20/alpha crystallin family FKBP26_C PF18046.1 gi|389846195|ref|YP_006348434.1| - 0.043 13.9 0.0 0.14 12.3 0.0 1.7 2 0 0 2 2 2 0 FKBP26_C-terminal ArsA_HSP20 PF17886.1 gi|389846195|ref|YP_006348434.1| - 0.15 11.6 0.0 0.64 9.6 0.0 1.9 2 0 0 2 2 2 0 HSP20-like domain found in ArsA zinc_ribbon_9 PF14369.6 gi|662859372|ref|YP_006348435.2| - 0.0033 17.6 0.1 0.0049 17.1 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon zf-Di19 PF05605.12 gi|662859372|ref|YP_006348435.2| - 0.029 14.7 0.1 0.052 13.8 0.1 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Viral_P18 PF04521.13 gi|662859372|ref|YP_006348435.2| - 0.091 12.6 0.2 0.1 12.4 0.2 1.0 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein zf_C2H2_10 PF18414.1 gi|662859372|ref|YP_006348435.2| - 0.23 11.0 0.2 0.23 11.0 0.2 2.1 3 0 0 3 3 3 0 C2H2 type zinc-finger PyrI_C PF02748.15 gi|662859372|ref|YP_006348435.2| - 0.54 10.2 4.2 2.8 7.9 4.2 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Radical_SAM PF04055.21 gi|389846197|ref|YP_006348436.1| - 6.7e-14 52.6 0.0 2.4e-13 50.8 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|389846197|ref|YP_006348436.1| - 5.5e-07 29.1 0.0 2.1e-06 27.3 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|389846197|ref|YP_006348436.1| - 2.5e-05 24.4 0.0 6.5e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|389846197|ref|YP_006348436.1| - 0.0059 17.2 0.0 0.015 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|389846197|ref|YP_006348436.1| - 0.015 15.3 0.0 0.053 13.5 0.0 1.9 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.7 gi|389846197|ref|YP_006348436.1| - 0.17 12.0 0.0 0.5 10.5 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif MFS_1 PF07690.16 gi|389846198|ref|YP_006348437.1| - 1.4e-22 80.1 47.4 3.7e-18 65.6 25.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|389846198|ref|YP_006348437.1| - 6.4e-06 25.2 2.8 0.0021 16.9 0.1 2.9 1 1 2 3 3 3 2 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|389846198|ref|YP_006348437.1| - 0.00067 18.6 4.7 0.021 13.7 4.7 2.2 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|389846198|ref|YP_006348437.1| - 0.00096 18.1 3.7 0.00096 18.1 3.7 2.6 2 1 1 3 3 3 1 Sugar (and other) transporter TRAM PF01938.20 gi|389846199|ref|YP_006348438.1| - 9.2e-14 51.2 3.1 1.7e-13 50.3 3.1 1.5 1 0 0 1 1 1 1 TRAM domain CxxCxxCC PF03692.15 gi|389846200|ref|YP_006348439.1| - 3.8e-13 49.9 0.0 8.3e-13 48.8 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.17 gi|389846200|ref|YP_006348439.1| - 0.06 13.7 0.3 0.06 13.7 0.3 2.0 2 0 0 2 2 2 0 High potential iron-sulfur protein Lactamase_B PF00753.27 gi|389846201|ref|YP_006348440.1| - 4.4e-11 43.2 8.5 9.4e-11 42.1 8.5 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|389846201|ref|YP_006348440.1| - 0.0006 19.7 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_2 PF12706.7 gi|389846201|ref|YP_006348440.1| - 0.0032 17.0 0.3 0.0057 16.2 0.3 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1442 PF07279.11 gi|389846201|ref|YP_006348440.1| - 0.021 14.1 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) Tfb2_C PF18307.1 gi|389846201|ref|YP_006348440.1| - 0.087 13.3 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcription factor Tfb2 (p52) C-terminal domain HTH_24 PF13412.6 gi|662859373|ref|YP_006348441.2| - 1e-06 28.2 0.0 1.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|662859373|ref|YP_006348441.2| - 0.00013 22.0 0.5 0.00094 19.2 0.5 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|662859373|ref|YP_006348441.2| - 0.00029 20.7 0.1 0.00039 20.3 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|662859373|ref|YP_006348441.2| - 0.0015 18.1 0.2 0.0024 17.5 0.2 1.4 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|662859373|ref|YP_006348441.2| - 0.0038 17.1 0.4 0.02 14.8 0.1 2.2 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain MarR PF01047.22 gi|662859373|ref|YP_006348441.2| - 0.021 14.8 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|662859373|ref|YP_006348441.2| - 0.05 13.6 0.0 0.21 11.6 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|662859373|ref|YP_006348441.2| - 0.055 13.3 0.0 0.073 12.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Peptidase_M28 PF04389.17 gi|662859373|ref|YP_006348441.2| - 0.069 12.8 0.0 0.071 12.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M28 HTH_Crp_2 PF13545.6 gi|662859373|ref|YP_006348441.2| - 0.083 12.9 0.0 0.1 12.6 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|389846203|ref|YP_006348442.1| - 0.00017 21.6 0.4 0.00026 21.0 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|389846203|ref|YP_006348442.1| - 0.0018 18.6 0.5 0.0019 18.5 0.5 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ogr_Delta PF04606.12 gi|389846203|ref|YP_006348442.1| - 0.0033 17.4 4.0 0.75 9.8 0.3 2.2 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger PhnA_Zn_Ribbon PF08274.12 gi|389846203|ref|YP_006348442.1| - 0.0085 16.0 3.5 0.023 14.7 3.5 1.7 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DpnI PF06044.12 gi|389846203|ref|YP_006348442.1| - 0.013 15.1 0.1 0.02 14.5 0.1 1.4 1 1 0 1 1 1 0 Dam-replacing family Cytochrom_NNT PF03264.14 gi|389846203|ref|YP_006348442.1| - 0.015 15.0 2.1 0.016 14.9 2.1 1.0 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Zn_ribbon_recom PF13408.6 gi|389846203|ref|YP_006348442.1| - 0.017 15.7 0.1 1.7 9.2 0.0 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain HypA PF01155.19 gi|389846203|ref|YP_006348442.1| - 0.02 14.9 0.3 0.02 14.9 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|389846203|ref|YP_006348442.1| - 0.021 14.8 0.4 0.029 14.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|389846203|ref|YP_006348442.1| - 0.024 14.5 2.4 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rhodanese_C PF12368.8 gi|389846203|ref|YP_006348442.1| - 0.034 14.5 1.2 0.14 12.5 1.4 1.8 1 1 0 1 1 1 0 Rhodanase C-terminal YdjO PF14169.6 gi|389846203|ref|YP_006348442.1| - 0.093 12.5 1.0 6.5 6.6 0.1 2.1 2 0 0 2 2 2 0 Cold-inducible protein YdjO WVELL PF14043.6 gi|389846203|ref|YP_006348442.1| - 0.12 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 WVELL protein zinc_ribbon_5 PF13719.6 gi|389846203|ref|YP_006348442.1| - 0.12 12.2 1.5 1 9.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|389846203|ref|YP_006348442.1| - 0.12 12.2 3.9 1.4 8.7 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|389846203|ref|YP_006348442.1| - 0.14 12.4 1.7 3.4 7.9 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|389846203|ref|YP_006348442.1| - 0.16 12.0 1.9 1 9.4 1.9 1.9 1 1 0 1 1 1 0 zinc-ribbons RNA_POL_M_15KD PF02150.16 gi|389846203|ref|YP_006348442.1| - 0.17 11.8 2.0 0.93 9.4 0.4 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF983 PF06170.12 gi|389846203|ref|YP_006348442.1| - 0.19 12.1 1.0 5.5 7.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Zn_Tnp_IS1595 PF12760.7 gi|389846203|ref|YP_006348442.1| - 0.26 11.3 5.9 0.61 10.1 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|389846203|ref|YP_006348442.1| - 0.46 10.7 0.1 0.46 10.7 0.1 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PriA_CRR PF18319.1 gi|389846203|ref|YP_006348442.1| - 0.55 10.3 10.8 3.2 7.8 4.6 2.3 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain Rubredoxin_2 PF18073.1 gi|389846203|ref|YP_006348442.1| - 3.5 7.4 8.5 7 6.5 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Methyltransf_25 PF13649.6 gi|389846204|ref|YP_006348443.1| - 2.8e-24 85.6 0.1 5.4e-24 84.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846204|ref|YP_006348443.1| - 2.8e-23 82.4 0.1 7.5e-23 81.0 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846204|ref|YP_006348443.1| - 3.2e-16 59.5 0.0 4.8e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389846204|ref|YP_006348443.1| - 1.6e-14 53.8 0.0 3.2e-14 52.8 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|389846204|ref|YP_006348443.1| - 2.9e-13 50.0 0.0 3.8e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846204|ref|YP_006348443.1| - 4.3e-13 49.9 0.0 6.9e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|389846204|ref|YP_006348443.1| - 1.3e-06 27.6 0.0 1.7e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|389846204|ref|YP_006348443.1| - 1.7e-05 24.6 0.0 5.1e-05 23.1 0.0 1.8 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|389846204|ref|YP_006348443.1| - 5.9e-05 22.7 0.0 7.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|389846204|ref|YP_006348443.1| - 0.00088 18.8 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|389846204|ref|YP_006348443.1| - 0.001 18.5 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|389846204|ref|YP_006348443.1| - 0.0011 18.1 0.0 0.0014 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|389846204|ref|YP_006348443.1| - 0.0018 17.9 0.0 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|389846204|ref|YP_006348443.1| - 0.0038 16.8 0.0 0.0056 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_20 PF12147.8 gi|389846204|ref|YP_006348443.1| - 0.0072 15.5 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.11 gi|389846204|ref|YP_006348443.1| - 0.0097 14.9 0.0 0.017 14.1 0.0 1.3 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase NodS PF05401.11 gi|389846204|ref|YP_006348443.1| - 0.012 15.2 0.0 0.016 14.8 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|389846204|ref|YP_006348443.1| - 0.014 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|389846204|ref|YP_006348443.1| - 0.036 14.2 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_3 PF01596.17 gi|389846204|ref|YP_006348443.1| - 0.037 13.2 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase TPMT PF05724.11 gi|389846204|ref|YP_006348443.1| - 0.048 13.3 0.0 0.079 12.6 0.0 1.3 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 gi|389846204|ref|YP_006348443.1| - 0.049 13.4 0.0 0.076 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|389846204|ref|YP_006348443.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|389846204|ref|YP_006348443.1| - 0.092 12.5 0.0 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF938) Methyltrans_SAM PF10672.9 gi|389846204|ref|YP_006348443.1| - 0.094 11.9 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Glycos_transf_2 PF00535.26 gi|662859374|ref|YP_006348444.2| - 6.8e-16 58.5 0.2 3e-15 56.4 0.1 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|662859374|ref|YP_006348444.2| - 1.1e-07 31.9 0.4 4.9e-07 29.9 0.4 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|662859374|ref|YP_006348444.2| - 0.043 13.3 0.0 0.35 10.3 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Amidohydro_2 PF04909.14 gi|389846206|ref|YP_006348445.1| - 3e-13 50.2 0.4 8e-13 48.8 0.4 1.7 1 1 0 1 1 1 1 Amidohydrolase HTH_10 PF04967.12 gi|389846207|ref|YP_006348446.1| - 1.9e-15 56.4 0.4 2.8e-15 55.9 0.4 1.2 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389846207|ref|YP_006348446.1| - 1.3e-08 34.9 0.1 2.2e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|389846207|ref|YP_006348446.1| - 0.00042 20.1 2.3 0.00097 18.9 1.8 2.0 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|389846207|ref|YP_006348446.1| - 0.00052 19.5 0.3 0.00081 18.9 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|389846207|ref|YP_006348446.1| - 0.0038 16.8 0.0 0.008 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389846207|ref|YP_006348446.1| - 0.041 13.8 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.14 gi|389846207|ref|YP_006348446.1| - 0.056 13.7 0.0 0.085 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HalOD1 PF18545.1 gi|389846208|ref|YP_006348447.1| - 4e-16 59.0 0.1 4.9e-16 58.8 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Cpn60_TCP1 PF00118.24 gi|389846209|ref|YP_006348448.1| - 7e-152 506.5 14.0 7.9e-152 506.3 14.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SIS_2 PF13580.6 gi|389846209|ref|YP_006348448.1| - 0.034 14.2 0.1 0.12 12.4 0.1 2.0 1 0 0 1 1 1 0 SIS domain EccE PF11203.8 gi|389846209|ref|YP_006348448.1| - 0.19 12.1 2.8 2.8 8.3 0.4 3.5 2 1 1 3 3 3 0 Putative type VII ESX secretion system translocon, EccE UPF0126 PF03458.13 gi|389846210|ref|YP_006348449.1| - 3.4e-38 129.4 32.3 1.7e-20 72.6 11.8 2.4 2 0 0 2 2 2 2 UPF0126 domain SAM_adeno_trans PF01887.16 gi|389846211|ref|YP_006348450.1| - 6.8e-75 251.5 0.1 7.6e-75 251.4 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|662859375|ref|YP_006348451.2| - 1.2e-14 54.7 0.0 2.4e-14 53.7 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|662859375|ref|YP_006348451.2| - 0.039 13.6 0.0 0.55 9.9 0.0 2.4 1 1 2 3 3 3 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.13 gi|389846213|ref|YP_006348452.1| - 7.8e-35 120.3 3.3 1.2e-34 119.7 3.3 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|389846213|ref|YP_006348452.1| - 8e-30 104.1 0.0 4.2e-22 78.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|389846213|ref|YP_006348452.1| - 1.5e-17 63.6 0.1 1.1e-10 41.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|389846213|ref|YP_006348452.1| - 1.2e-14 54.4 0.0 5.9e-08 32.6 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|389846213|ref|YP_006348452.1| - 1.1e-09 38.4 0.0 0.00064 19.7 0.0 2.9 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|389846213|ref|YP_006348452.1| - 2.4e-09 37.1 0.4 5.4e-09 35.9 0.4 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|389846213|ref|YP_006348452.1| - 7.1e-07 28.6 0.0 0.027 13.6 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|389846213|ref|YP_006348452.1| - 1.2e-06 29.0 0.0 0.065 13.7 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|389846213|ref|YP_006348452.1| - 6e-06 26.1 0.1 0.0048 16.7 0.0 2.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|389846213|ref|YP_006348452.1| - 7.5e-05 22.1 0.5 0.052 12.8 0.0 2.7 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|389846213|ref|YP_006348452.1| - 0.00012 22.3 0.0 0.0022 18.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|389846213|ref|YP_006348452.1| - 0.00024 21.2 0.0 0.49 10.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|389846213|ref|YP_006348452.1| - 0.0003 20.3 0.0 0.001 18.7 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|389846213|ref|YP_006348452.1| - 0.0005 19.9 0.1 0.69 9.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|389846213|ref|YP_006348452.1| - 0.00088 19.6 0.0 0.56 10.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|389846213|ref|YP_006348452.1| - 0.0027 17.5 0.0 0.099 12.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|389846213|ref|YP_006348452.1| - 0.0047 15.9 0.0 0.22 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_33 PF13671.6 gi|389846213|ref|YP_006348452.1| - 0.017 15.3 0.1 0.062 13.5 0.0 2.1 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|389846213|ref|YP_006348452.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF815 PF05673.13 gi|389846213|ref|YP_006348452.1| - 0.028 13.6 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|389846213|ref|YP_006348452.1| - 0.032 14.3 0.1 6 7.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|389846213|ref|YP_006348452.1| - 0.034 13.9 0.0 0.094 12.4 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|389846213|ref|YP_006348452.1| - 0.036 14.6 0.0 0.12 12.9 0.0 1.9 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|389846213|ref|YP_006348452.1| - 0.037 13.9 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|389846213|ref|YP_006348452.1| - 0.04 14.3 0.0 0.33 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain MCM_lid PF17855.1 gi|389846213|ref|YP_006348452.1| - 0.042 14.3 0.1 0.46 10.9 0.0 2.4 1 1 1 2 2 2 0 MCM AAA-lid domain AAA_10 PF12846.7 gi|389846213|ref|YP_006348452.1| - 0.049 12.6 0.0 0.21 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|389846213|ref|YP_006348452.1| - 0.058 12.3 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|389846213|ref|YP_006348452.1| - 0.061 13.9 0.0 0.27 11.8 0.0 2.2 2 0 0 2 2 1 0 AAA domain Parvo_NS1 PF01057.17 gi|389846213|ref|YP_006348452.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF5345 PF17280.2 gi|389846213|ref|YP_006348452.1| - 1.4 9.0 2.9 0.81 9.7 0.1 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5345) CPBP PF02517.16 gi|389846214|ref|YP_006348453.1| - 5.9e-12 45.8 9.2 5.9e-12 45.8 9.2 1.9 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease DUF308 PF03729.13 gi|389846215|ref|YP_006348454.1| - 0.67 10.3 12.1 0.13 12.6 7.5 2.1 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) DNA_binding_1 PF01035.20 gi|389846216|ref|YP_006348455.1| - 2.1e-07 30.9 0.0 3.8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain PikAIV_N PF18605.1 gi|389846216|ref|YP_006348455.1| - 0.027 14.0 2.5 0.28 10.8 0.4 2.3 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain DprA_WH PF17782.1 gi|389846216|ref|YP_006348455.1| - 1 9.5 4.5 7.1 6.8 0.9 2.9 2 1 1 3 3 3 0 DprA winged helix domain IGPS PF00218.21 gi|662859376|ref|YP_006348456.2| - 9.9e-74 247.7 0.0 1.2e-73 247.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|662859376|ref|YP_006348456.2| - 3.3e-06 27.0 0.0 7.3e-06 25.9 0.0 1.5 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|662859376|ref|YP_006348456.2| - 0.00046 19.3 0.3 0.0018 17.4 0.4 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|662859376|ref|YP_006348456.2| - 0.003 16.8 0.1 0.012 14.8 0.1 2.1 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|662859376|ref|YP_006348456.2| - 0.0033 16.9 0.0 0.033 13.7 0.0 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF1611_N PF17396.2 gi|662859376|ref|YP_006348456.2| - 0.047 13.9 0.7 4.6 7.5 0.0 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF1611_N) Rossmann-like domain DHO_dh PF01180.21 gi|662859376|ref|YP_006348456.2| - 0.075 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PALP PF00291.25 gi|389846218|ref|YP_006348457.1| - 1.2e-39 136.5 0.9 1.6e-39 136.1 0.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|389846219|ref|YP_006348458.1| - 1.3e-93 312.6 0.0 1.6e-93 312.3 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|389846219|ref|YP_006348458.1| - 0.0006 19.3 0.1 0.0014 18.2 0.1 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|389846219|ref|YP_006348458.1| - 0.0025 17.3 0.2 0.042 13.3 0.2 2.2 2 0 0 2 2 2 1 PcrB family IGPS PF00218.21 gi|389846219|ref|YP_006348458.1| - 0.24 10.5 0.0 0.32 10.1 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DeoC PF01791.9 gi|389846220|ref|YP_006348459.1| - 5.1e-42 144.1 0.1 6.4e-42 143.8 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|389846220|ref|YP_006348459.1| - 0.0031 17.0 0.0 0.0054 16.2 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TMP-TENI PF02581.17 gi|389846220|ref|YP_006348459.1| - 0.013 14.9 0.8 2.1 7.6 0.2 3.0 3 1 0 3 3 3 0 Thiamine monophosphate synthase OMPdecase PF00215.24 gi|389846220|ref|YP_006348459.1| - 0.016 14.8 0.2 0.022 14.4 0.2 1.2 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.12 gi|389846220|ref|YP_006348459.1| - 0.078 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) DNA_binding_1 PF01035.20 gi|389846221|ref|YP_006348460.1| - 1.5e-25 89.1 0.0 2.1e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Acetyltransf_10 PF13673.7 gi|389846222|ref|YP_006348461.1| - 5.4e-20 71.6 0.1 6.9e-20 71.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389846222|ref|YP_006348461.1| - 3.4e-16 59.5 0.1 4.1e-16 59.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389846222|ref|YP_006348461.1| - 2.4e-15 56.7 0.3 3.5e-15 56.2 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389846222|ref|YP_006348461.1| - 1.3e-08 34.9 0.6 5.4e-07 29.7 0.6 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|389846222|ref|YP_006348461.1| - 1.1e-05 25.6 0.0 1.4e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389846222|ref|YP_006348461.1| - 0.00019 21.4 0.0 0.00035 20.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_5 PF13444.6 gi|389846222|ref|YP_006348461.1| - 0.0049 17.6 0.1 0.0093 16.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_10 PF04967.12 gi|389846223|ref|YP_006348462.1| - 2.2e-13 49.8 0.0 4.1e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389846223|ref|YP_006348462.1| - 9.3e-05 22.3 0.9 0.00017 21.5 0.9 1.6 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|389846223|ref|YP_006348462.1| - 0.024 14.2 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Nitroreductase PF00881.24 gi|389846224|ref|YP_006348463.1| - 7.8e-16 58.6 0.1 6.4e-08 32.8 0.1 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|389846224|ref|YP_006348463.1| - 6.9e-06 25.8 0.0 1.4e-05 24.8 0.0 1.4 2 0 0 2 2 2 1 Putative TM nitroreductase EamA PF00892.20 gi|389846225|ref|YP_006348464.1| - 1e-15 58.1 28.8 1.2e-11 44.9 13.9 2.3 2 1 0 2 2 2 2 EamA-like transporter family DHQS PF01959.16 gi|662859377|ref|YP_006348467.2| - 2.5e-146 487.1 2.3 2.9e-146 486.9 2.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II QRPTase_C PF01729.19 gi|662859377|ref|YP_006348467.2| - 0.011 15.6 1.0 0.084 12.6 0.1 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Hint PF01079.20 gi|662859377|ref|YP_006348467.2| - 0.059 12.9 0.0 0.3 10.6 0.0 2.0 2 0 0 2 2 2 0 Hint module UPF0086 PF01868.16 gi|662859377|ref|YP_006348467.2| - 0.062 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function UPF0086 GCD14_N PF14801.6 gi|662859377|ref|YP_006348467.2| - 0.083 12.7 0.4 0.82 9.6 0.0 2.7 3 0 0 3 3 3 0 tRNA methyltransferase complex GCD14 subunit N-term Hint_2 PF13403.6 gi|662859377|ref|YP_006348467.2| - 0.089 13.1 1.5 6.8 7.0 0.1 3.1 3 1 0 3 3 3 0 Hint domain Peptidase_S31 PF05578.12 gi|662859377|ref|YP_006348467.2| - 0.16 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Pestivirus NS3 polyprotein peptidase S31 DZR PF12773.7 gi|389846229|ref|YP_006348468.1| - 0.0031 17.5 0.6 0.0049 16.9 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|389846229|ref|YP_006348468.1| - 0.034 14.9 0.1 0.046 14.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|389846229|ref|YP_006348468.1| - 0.048 13.6 0.1 0.068 13.2 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|389846229|ref|YP_006348468.1| - 0.093 12.5 1.0 11 5.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|389846229|ref|YP_006348468.1| - 0.15 12.0 1.0 0.23 11.4 1.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Prok-RING_4 PF14447.6 gi|389846229|ref|YP_006348468.1| - 0.15 11.9 1.5 2.3 8.2 1.5 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 Rad50_zn_hook PF04423.14 gi|389846229|ref|YP_006348468.1| - 0.23 11.3 1.7 0.48 10.3 0.2 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C3HC4_3 PF13920.6 gi|389846229|ref|YP_006348468.1| - 0.4 10.6 2.2 2 8.3 0.2 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) TM2 PF05154.16 gi|389846229|ref|YP_006348468.1| - 0.51 10.7 6.0 0.1 13.0 2.7 1.5 2 0 0 2 2 2 0 TM2 domain DUF3040 PF11239.8 gi|389846229|ref|YP_006348468.1| - 7.7 6.9 11.2 2.4 8.5 2.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DHquinase_I PF01487.15 gi|389846230|ref|YP_006348469.1| - 2.2e-43 149.2 0.0 2.6e-43 148.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase N6_N4_Mtase PF01555.18 gi|662859378|ref|YP_006348470.2| - 2.4e-37 128.9 0.0 4.8e-37 127.9 0.0 1.5 2 0 0 2 2 2 1 DNA methylase Methyltransf_11 PF08241.12 gi|662859378|ref|YP_006348470.2| - 7.5e-06 26.5 0.1 0.012 16.3 0.1 3.3 2 1 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|662859378|ref|YP_006348470.2| - 0.0012 18.5 0.0 0.74 9.5 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|662859378|ref|YP_006348470.2| - 0.0014 19.3 0.0 22 5.8 0.0 3.3 3 0 0 3 3 3 2 Methyltransferase domain MethyltransfD12 PF02086.15 gi|662859378|ref|YP_006348470.2| - 0.12 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_12 PF08242.12 gi|662859378|ref|YP_006348470.2| - 0.17 12.6 0.1 36 5.2 0.0 2.7 3 0 0 3 3 3 0 Methyltransferase domain TFIIB PF00382.19 gi|389846232|ref|YP_006348471.1| - 1.2e-39 134.1 0.6 1.7e-19 69.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|389846232|ref|YP_006348471.1| - 1.6e-15 56.3 2.4 3.2e-15 55.3 2.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|389846232|ref|YP_006348471.1| - 0.0051 16.7 1.2 0.013 15.4 1.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Anti-TRAP PF15777.5 gi|389846232|ref|YP_006348471.1| - 0.0062 16.5 0.7 0.012 15.5 0.7 1.5 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein A2L_zn_ribbon PF08792.10 gi|389846232|ref|YP_006348471.1| - 0.024 14.4 1.2 0.044 13.5 1.2 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF5419 PF17441.2 gi|389846232|ref|YP_006348471.1| - 0.039 14.1 0.0 2.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5419) Cyclin_C PF02984.19 gi|389846232|ref|YP_006348471.1| - 0.071 13.2 0.0 6.7 6.8 0.1 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain Lar_restr_allev PF14354.6 gi|389846232|ref|YP_006348471.1| - 0.11 12.9 0.5 0.11 12.9 0.5 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|389846232|ref|YP_006348471.1| - 0.12 11.9 6.4 0.59 9.7 0.0 4.2 5 0 0 5 5 5 0 Sigma-70, region 4 zf-ribbon_3 PF13248.6 gi|389846232|ref|YP_006348471.1| - 0.27 10.7 4.1 1.1 8.8 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|389846232|ref|YP_006348471.1| - 0.3 10.8 2.3 0.5 10.1 2.3 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|389846232|ref|YP_006348471.1| - 0.43 10.7 4.4 0.95 9.6 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain HTH_AsnC-type PF13404.6 gi|389846232|ref|YP_006348471.1| - 0.47 10.3 3.1 2.4 8.1 0.0 3.4 4 1 0 4 4 4 0 AsnC-type helix-turn-helix domain DNA_ligase_ZBD PF03119.16 gi|389846232|ref|YP_006348471.1| - 2 8.5 6.2 1.5 8.9 3.9 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.6 gi|389846232|ref|YP_006348471.1| - 3 7.9 5.0 9.3 6.3 5.0 1.9 1 0 0 1 1 1 0 Nudix N-terminal Peripla_BP_2 PF01497.18 gi|389846233|ref|YP_006348472.1| - 1.8e-11 44.0 0.0 2.7e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF2312 PF10073.9 gi|389846233|ref|YP_006348472.1| - 0.17 11.6 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2312) NTPase_I-T PF01931.18 gi|662859379|ref|YP_006348473.2| - 2.2e-48 164.1 0.0 2.5e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 LPG_synthase_TM PF03706.13 gi|389846235|ref|YP_006348474.1| - 4.3e-40 138.1 34.3 6.7e-40 137.5 34.3 1.3 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|389846235|ref|YP_006348474.1| - 7.3e-29 100.7 0.1 1.1e-28 100.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389846235|ref|YP_006348474.1| - 1.1e-12 48.4 0.4 2.4e-12 47.2 0.4 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|389846235|ref|YP_006348474.1| - 0.00039 20.0 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|389846235|ref|YP_006348474.1| - 0.0059 17.1 0.1 0.014 15.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 RPA_C PF08784.11 gi|389846236|ref|YP_006348475.1| - 0.045 14.4 0.0 0.052 14.2 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal LexA_DNA_bind PF01726.16 gi|389846236|ref|YP_006348475.1| - 0.07 12.9 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|389846236|ref|YP_006348475.1| - 0.14 12.2 0.0 0.74 9.9 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|389846236|ref|YP_006348475.1| - 0.17 11.5 0.1 0.96 9.1 0.1 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|389846237|ref|YP_006348476.1| - 4.2e-09 36.2 0.2 1.3e-06 28.2 0.1 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|389846237|ref|YP_006348476.1| - 6.9e-09 35.1 0.0 1.8e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|389846237|ref|YP_006348476.1| - 1e-07 32.0 0.0 0.012 15.7 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|389846237|ref|YP_006348476.1| - 2.3e-07 30.8 0.2 0.011 15.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|389846237|ref|YP_006348476.1| - 3.1e-07 30.2 0.0 5.5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|389846237|ref|YP_006348476.1| - 8.2e-06 25.6 0.0 0.0027 17.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389846237|ref|YP_006348476.1| - 9.3e-06 25.5 0.0 2.6e-05 24.1 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|389846237|ref|YP_006348476.1| - 1.9e-05 24.4 1.0 0.0032 17.2 0.1 3.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389846237|ref|YP_006348476.1| - 4.1e-05 23.4 0.0 0.0029 17.4 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|389846237|ref|YP_006348476.1| - 0.00039 20.2 0.4 0.00094 19.0 0.0 1.8 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|389846237|ref|YP_006348476.1| - 0.00042 20.2 1.6 0.00057 19.8 0.0 2.0 3 0 0 3 3 2 1 MarR family HTH_23 PF13384.6 gi|389846237|ref|YP_006348476.1| - 0.00059 19.6 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|389846237|ref|YP_006348476.1| - 0.0017 18.3 0.2 0.0094 16.0 0.0 2.3 3 0 0 3 3 2 1 Winged helix-turn helix GntR PF00392.21 gi|389846237|ref|YP_006348476.1| - 0.0062 16.2 0.1 0.024 14.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Phage_CI_repr PF07022.13 gi|389846237|ref|YP_006348476.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain RP-C PF03428.13 gi|389846237|ref|YP_006348476.1| - 0.021 14.5 0.1 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain Sigma70_r4 PF04545.16 gi|389846237|ref|YP_006348476.1| - 0.021 14.3 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.7 gi|389846237|ref|YP_006348476.1| - 0.025 14.8 0.0 0.45 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|389846237|ref|YP_006348476.1| - 0.029 14.2 0.4 0.12 12.2 0.0 2.2 3 0 0 3 3 2 0 HTH DNA binding domain RepL PF05732.11 gi|389846237|ref|YP_006348476.1| - 0.034 13.6 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) KorB PF08535.10 gi|389846237|ref|YP_006348476.1| - 0.037 14.1 0.0 0.083 12.9 0.0 1.5 2 0 0 2 2 1 0 KorB domain Fe_dep_repress PF01325.19 gi|389846237|ref|YP_006348476.1| - 0.045 14.0 0.0 0.081 13.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.12 gi|389846237|ref|YP_006348476.1| - 0.045 14.1 0.0 0.27 11.6 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein HTH_36 PF13730.6 gi|389846237|ref|YP_006348476.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|389846237|ref|YP_006348476.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix MerR_1 PF13411.6 gi|389846237|ref|YP_006348476.1| - 0.068 13.3 0.0 0.39 10.9 0.0 2.0 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_26 PF13443.6 gi|389846237|ref|YP_006348476.1| - 0.11 13.0 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_22 PF13309.6 gi|389846237|ref|YP_006348476.1| - 0.12 12.4 0.1 0.47 10.6 0.1 1.9 2 0 0 2 2 2 0 HTH domain Phage_NinH PF06322.11 gi|389846237|ref|YP_006348476.1| - 0.13 12.2 0.1 2.2 8.2 0.0 2.4 2 0 0 2 2 2 0 Phage NinH protein HTH_6 PF01418.17 gi|389846237|ref|YP_006348476.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Band_7 PF01145.25 gi|389846238|ref|YP_006348477.1| - 4e-38 131.2 3.9 4e-38 131.2 3.9 2.4 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|389846238|ref|YP_006348477.1| - 0.0027 17.5 0.5 0.0065 16.2 0.2 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF347 PF03988.12 gi|389846238|ref|YP_006348477.1| - 2.2 8.5 4.0 4.1 7.7 4.0 1.4 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) Band_7 PF01145.25 gi|389846239|ref|YP_006348478.1| - 6.9e-26 91.3 2.4 8.6e-26 91.0 2.4 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Tsi6 PF18660.1 gi|389846239|ref|YP_006348478.1| - 0.11 12.6 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Tsi6 NfeD PF01957.18 gi|389846240|ref|YP_006348479.1| - 7.3e-07 29.5 0.3 1.6e-06 28.4 0.3 1.7 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding PUA PF01472.20 gi|389846240|ref|YP_006348479.1| - 0.56 10.2 2.9 0.2 11.7 0.4 1.6 2 0 0 2 2 2 0 PUA domain Mrr_cat PF04471.12 gi|389846241|ref|YP_006348480.1| - 7.8e-07 29.1 0.1 1.5e-06 28.2 0.1 1.5 1 0 0 1 1 1 1 Restriction endonuclease DUF4352 PF11611.8 gi|389846241|ref|YP_006348480.1| - 0.037 14.3 0.7 0.089 13.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4352) Rubella_E2 PF05749.11 gi|389846242|ref|YP_006348481.1| - 0.22 11.0 2.1 0.38 10.2 2.1 1.3 1 0 0 1 1 1 0 Rubella membrane glycoprotein E2 PK PF00224.21 gi|662859380|ref|YP_006348483.2| - 6e-111 370.7 3.3 8.6e-111 370.2 3.3 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|662859380|ref|YP_006348483.2| - 2.3e-31 108.5 2.7 2.6e-31 108.3 1.5 1.8 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|662859380|ref|YP_006348483.2| - 4.4e-10 39.1 2.3 1.7e-09 37.3 0.1 3.2 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|662859380|ref|YP_006348483.2| - 0.0026 16.9 4.9 0.013 14.6 0.4 2.4 2 0 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family Cytochrom_B_C PF00032.17 gi|389846245|ref|YP_006348484.1| - 3.4e-11 43.3 0.9 6.6e-11 42.4 0.7 1.6 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF2214 PF09980.9 gi|389846245|ref|YP_006348484.1| - 0.044 13.6 0.3 0.11 12.3 0.2 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2214) MARVEL PF01284.23 gi|389846245|ref|YP_006348484.1| - 0.067 13.2 5.0 0.17 11.9 5.0 1.7 1 1 0 1 1 1 0 Membrane-associating domain Metal_resist PF13801.6 gi|389846247|ref|YP_006348486.1| - 0.16 12.1 0.0 0.21 11.7 0.0 1.1 1 0 0 1 1 1 0 Heavy-metal resistance tRNA-synt_1g PF09334.11 gi|662859381|ref|YP_006348488.2| - 1.3e-147 491.7 0.0 1.7e-147 491.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|662859381|ref|YP_006348488.2| - 3.5e-21 75.1 0.1 6e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|662859381|ref|YP_006348488.2| - 8.8e-15 54.0 4.9 3.5e-08 32.2 0.2 3.4 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|662859381|ref|YP_006348488.2| - 1.6e-09 37.6 0.0 2.5e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|662859381|ref|YP_006348488.2| - 7e-08 32.6 0.2 1.5e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|662859381|ref|YP_006348488.2| - 0.0014 17.6 0.3 4.4 6.1 0.0 3.4 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|662859381|ref|YP_006348488.2| - 0.038 12.9 0.0 1 8.2 0.0 3.0 4 0 0 4 4 4 0 tRNA synthetases class I (R) Cdh1_DBD_1 PF18196.1 gi|662859381|ref|YP_006348488.2| - 0.054 13.8 0.7 0.16 12.3 0.2 2.0 2 0 0 2 2 2 0 Chromodomain helicase DNA-binding domain 1 DUF2423 PF10338.9 gi|662859381|ref|YP_006348488.2| - 0.31 11.3 0.7 0.72 10.1 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) SNARE_assoc PF09335.11 gi|389846250|ref|YP_006348489.1| - 3.1e-07 30.9 0.7 3.1e-07 30.9 0.7 1.8 1 1 1 2 2 2 1 SNARE associated Golgi protein Pyridoxal_deC PF00282.19 gi|389846251|ref|YP_006348490.1| - 2.6e-31 108.7 0.0 7.9e-31 107.1 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|389846251|ref|YP_006348490.1| - 8.9e-14 51.2 0.0 2.1e-13 50.0 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.19 gi|389846251|ref|YP_006348490.1| - 0.01 14.4 0.0 0.018 13.6 0.0 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF4140 PF13600.6 gi|389846251|ref|YP_006348490.1| - 0.053 14.0 0.1 0.19 12.2 0.0 2.0 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) CPBP PF02517.16 gi|389846252|ref|YP_006348491.1| - 5.8e-19 68.3 5.8 5.8e-19 68.3 5.8 2.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease PPDK_N PF01326.19 gi|389846253|ref|YP_006348492.1| - 4.1e-108 361.5 0.0 6.4e-108 360.9 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|389846253|ref|YP_006348492.1| - 2.3e-81 273.1 0.1 3.3e-81 272.6 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|389846253|ref|YP_006348492.1| - 1.6e-27 95.0 4.7 3.5e-27 93.9 4.7 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|389846253|ref|YP_006348492.1| - 0.019 15.1 0.3 2.5 8.3 0.0 3.1 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal DnaJ PF00226.31 gi|389846254|ref|YP_006348493.1| - 2.1e-08 34.2 0.0 3.3e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain HTH_24 PF13412.6 gi|389846255|ref|YP_006348494.1| - 2.1e-11 43.2 0.0 4.5e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389846255|ref|YP_006348494.1| - 1.5e-10 40.8 0.7 4e-10 39.4 0.2 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|389846255|ref|YP_006348494.1| - 1.5e-07 31.2 0.0 3.5e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|389846255|ref|YP_006348494.1| - 3.1e-06 27.6 0.1 9.8e-06 26.0 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|389846255|ref|YP_006348494.1| - 8.5e-06 25.7 0.1 1.7e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|389846255|ref|YP_006348494.1| - 0.00015 21.7 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|389846255|ref|YP_006348494.1| - 0.00019 21.3 0.1 0.00032 20.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389846255|ref|YP_006348494.1| - 0.00045 20.2 0.8 0.0015 18.6 0.1 2.2 3 0 0 3 3 2 1 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|389846255|ref|YP_006348494.1| - 0.00051 19.7 0.1 0.00085 19.0 0.1 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_5 PF01022.20 gi|389846255|ref|YP_006348494.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|389846255|ref|YP_006348494.1| - 0.00089 19.0 0.0 0.0026 17.5 0.0 1.8 2 0 0 2 2 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389846255|ref|YP_006348494.1| - 0.0015 18.4 0.2 0.003 17.4 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mnd1 PF03962.15 gi|389846255|ref|YP_006348494.1| - 0.0016 18.6 0.3 0.0043 17.3 0.0 1.8 2 0 0 2 2 1 1 Mnd1 HTH domain HTH_23 PF13384.6 gi|389846255|ref|YP_006348494.1| - 0.0021 17.8 0.1 0.0037 17.0 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DUF4423 PF14394.6 gi|389846255|ref|YP_006348494.1| - 0.0024 17.6 0.0 0.0039 16.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|389846255|ref|YP_006348494.1| - 0.0034 17.7 0.0 0.0099 16.2 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator DUF2190 PF09956.9 gi|389846255|ref|YP_006348494.1| - 0.0043 17.5 2.7 0.0043 17.5 2.7 2.7 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2190) GntR PF00392.21 gi|389846255|ref|YP_006348494.1| - 0.0044 16.6 0.2 0.0096 15.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|389846255|ref|YP_006348494.1| - 0.0048 16.7 0.1 0.012 15.4 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Rio2_N PF09202.11 gi|389846255|ref|YP_006348494.1| - 0.0078 16.4 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 Rio2, N-terminal HTH_3 PF01381.22 gi|389846255|ref|YP_006348494.1| - 0.0082 16.2 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|389846255|ref|YP_006348494.1| - 0.0082 16.2 0.1 0.017 15.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|389846255|ref|YP_006348494.1| - 0.018 14.8 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) LacI PF00356.21 gi|389846255|ref|YP_006348494.1| - 0.054 13.3 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_13 PF11972.8 gi|389846255|ref|YP_006348494.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_10 PF04967.12 gi|389846255|ref|YP_006348494.1| - 0.085 12.7 0.1 0.18 11.6 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|389846255|ref|YP_006348494.1| - 0.09 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|389846255|ref|YP_006348494.1| - 0.09 12.6 0.1 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain YdaS_antitoxin PF15943.5 gi|389846255|ref|YP_006348494.1| - 0.1 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT RepL PF05732.11 gi|389846255|ref|YP_006348494.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 2 0 0 2 2 1 0 Firmicute plasmid replication protein (RepL) HTH_12 PF08461.10 gi|389846255|ref|YP_006348494.1| - 0.14 12.2 0.1 0.31 11.0 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FaeA PF04703.12 gi|389846255|ref|YP_006348494.1| - 0.14 12.6 0.4 0.55 10.6 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein NMD3 PF04981.13 gi|389846255|ref|YP_006348494.1| - 0.14 11.6 0.1 0.21 11.0 0.1 1.2 1 0 0 1 1 1 0 NMD3 family HU-DNA_bdg PF14848.6 gi|389846255|ref|YP_006348494.1| - 0.16 12.0 0.2 0.27 11.3 0.2 1.4 1 0 0 1 1 1 0 DNA-binding domain Metallophos_2 PF12850.7 gi|389846256|ref|YP_006348495.1| - 1.5e-05 25.3 0.4 2.5e-05 24.5 0.4 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|389846256|ref|YP_006348495.1| - 3.4e-05 24.4 0.7 0.0001 22.9 0.8 1.5 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase EGL-1 PF11430.8 gi|389846256|ref|YP_006348495.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 Amino_oxidase PF01593.24 gi|389846257|ref|YP_006348496.1| - 7.6e-51 173.8 1.4 8.4e-50 170.4 1.4 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|389846257|ref|YP_006348496.1| - 2.1e-16 59.9 0.3 5.1e-16 58.7 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389846257|ref|YP_006348496.1| - 6.3e-14 52.3 6.7 1.7e-06 27.9 3.4 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389846257|ref|YP_006348496.1| - 1.1e-10 41.2 0.1 1.2e-05 24.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389846257|ref|YP_006348496.1| - 3.8e-10 39.1 0.7 0.00011 21.1 0.3 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|389846257|ref|YP_006348496.1| - 3.6e-08 33.8 0.8 5.5e-05 23.7 0.4 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|389846257|ref|YP_006348496.1| - 8.4e-08 31.8 0.6 6.5e-06 25.6 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|389846257|ref|YP_006348496.1| - 1.5e-07 31.0 0.5 0.0012 18.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|389846257|ref|YP_006348496.1| - 1.1e-06 28.0 2.4 2.2e-05 23.7 1.6 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|389846257|ref|YP_006348496.1| - 4.6e-05 23.0 0.8 4.6e-05 23.0 0.8 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|389846257|ref|YP_006348496.1| - 0.00012 21.5 0.2 0.0002 20.7 0.2 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|389846257|ref|YP_006348496.1| - 0.00015 21.8 7.7 0.066 13.2 0.4 2.8 3 0 0 3 3 3 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|389846257|ref|YP_006348496.1| - 0.00045 19.4 1.5 0.0026 16.9 0.4 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|389846257|ref|YP_006348496.1| - 0.0006 19.0 3.1 0.045 12.8 0.2 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|389846257|ref|YP_006348496.1| - 0.00075 18.9 0.5 0.0012 18.2 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|389846257|ref|YP_006348496.1| - 0.0014 19.1 0.0 0.038 14.4 0.0 2.5 3 0 0 3 3 2 1 Putative NAD(P)-binding GDI PF00996.18 gi|389846257|ref|YP_006348496.1| - 0.0067 15.0 0.0 0.58 8.6 0.0 2.1 2 0 0 2 2 2 1 GDP dissociation inhibitor 3HCDH_N PF02737.18 gi|389846257|ref|YP_006348496.1| - 0.029 14.3 0.2 0.059 13.2 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|389846257|ref|YP_006348496.1| - 0.031 14.3 0.1 0.068 13.2 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase MCRA PF06100.11 gi|389846257|ref|YP_006348496.1| - 0.037 12.8 0.0 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 MCRA family FMO-like PF00743.19 gi|389846257|ref|YP_006348496.1| - 0.039 12.4 0.0 0.053 11.9 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like TrkA_N PF02254.18 gi|389846257|ref|YP_006348496.1| - 0.041 14.1 1.4 0.36 11.1 0.3 2.4 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|389846257|ref|YP_006348496.1| - 0.057 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.14 gi|389846257|ref|YP_006348496.1| - 0.09 11.6 4.7 0.15 10.8 0.8 2.1 2 0 0 2 2 2 0 Tryptophan halogenase YjeF_N PF03853.15 gi|389846257|ref|YP_006348496.1| - 0.093 12.6 0.2 0.19 11.6 0.2 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus IlvN PF07991.12 gi|389846257|ref|YP_006348496.1| - 0.14 11.7 1.7 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain PALP PF00291.25 gi|389846258|ref|YP_006348497.1| - 2.7e-62 210.8 1.5 3.2e-62 210.6 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peripla_BP_4 PF13407.6 gi|389846258|ref|YP_006348497.1| - 0.14 11.7 1.8 0.12 11.9 0.4 1.6 2 0 0 2 2 2 0 Periplasmic binding protein domain Fe_dep_repr_C PF02742.15 gi|389846259|ref|YP_006348498.1| - 5.8e-28 96.8 0.6 1.1e-27 95.9 0.6 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|389846259|ref|YP_006348498.1| - 3.6e-20 71.9 0.3 9.7e-20 70.5 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|389846259|ref|YP_006348498.1| - 9.5e-14 51.4 0.1 2e-13 50.4 0.1 1.6 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.7 gi|389846259|ref|YP_006348498.1| - 4.5e-08 32.9 0.0 1.3e-07 31.3 0.0 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389846259|ref|YP_006348498.1| - 1e-07 31.8 0.0 3.1e-07 30.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|389846259|ref|YP_006348498.1| - 9.5e-07 28.7 0.0 3e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Crp PF00325.20 gi|389846259|ref|YP_006348498.1| - 3.1e-05 23.5 0.0 6.4e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_IclR PF09339.10 gi|389846259|ref|YP_006348498.1| - 0.00014 21.5 0.2 0.00068 19.4 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389846259|ref|YP_006348498.1| - 0.00028 20.4 0.0 0.00055 19.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389846259|ref|YP_006348498.1| - 0.0043 16.9 0.0 0.0083 16.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|389846259|ref|YP_006348498.1| - 0.017 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Penicillinase_R PF03965.16 gi|389846259|ref|YP_006348498.1| - 0.021 15.2 0.0 0.066 13.6 0.0 1.8 2 0 0 2 2 1 0 Penicillinase repressor DUF2250 PF10007.9 gi|389846259|ref|YP_006348498.1| - 0.022 14.9 0.0 0.051 13.7 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|389846259|ref|YP_006348498.1| - 0.027 14.5 0.2 0.12 12.4 0.0 2.3 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|389846259|ref|YP_006348498.1| - 0.035 14.0 0.0 0.084 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389846259|ref|YP_006348498.1| - 0.053 14.0 0.0 0.18 12.3 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|389846259|ref|YP_006348498.1| - 0.054 13.9 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_12 PF08461.10 gi|389846259|ref|YP_006348498.1| - 0.06 13.3 0.1 0.38 10.7 0.1 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_1 PF00126.27 gi|389846259|ref|YP_006348498.1| - 0.061 13.3 0.0 0.24 11.4 0.0 2.1 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_13 PF11972.8 gi|389846259|ref|YP_006348498.1| - 0.081 13.0 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.12 gi|389846259|ref|YP_006348498.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain Topoisom_bac PF01131.20 gi|389846259|ref|YP_006348498.1| - 0.16 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase FeoC PF09012.10 gi|389846259|ref|YP_006348498.1| - 0.18 11.9 0.0 0.39 10.8 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator UPF0016 PF01169.19 gi|389846260|ref|YP_006348499.1| - 6.4e-25 87.3 13.8 1.6e-14 54.0 2.7 2.5 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 LysE PF01810.18 gi|662859382|ref|YP_006348500.2| - 1.3e-21 77.0 11.7 6.3e-20 71.4 11.7 2.0 1 1 0 1 1 1 1 LysE type translocator DUF900 PF05990.12 gi|389846262|ref|YP_006348501.1| - 3.2e-10 39.9 0.0 4.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) DUF726 PF05277.12 gi|389846262|ref|YP_006348501.1| - 4.8e-05 22.5 0.0 0.00024 20.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF726) DUF676 PF05057.14 gi|389846262|ref|YP_006348501.1| - 0.091 12.3 0.0 0.3 10.6 0.0 1.7 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Fe-ADH_2 PF13685.6 gi|389846263|ref|YP_006348502.1| - 5.2e-61 206.5 0.4 6.8e-61 206.1 0.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|389846263|ref|YP_006348502.1| - 1.3e-21 76.9 0.6 6.8e-21 74.5 0.6 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|389846263|ref|YP_006348502.1| - 2.7e-09 36.6 0.0 8.8e-09 34.9 0.0 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF420 PF04238.12 gi|389846264|ref|YP_006348503.1| - 1.9e-36 125.2 8.4 1.9e-36 125.2 8.4 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|389846264|ref|YP_006348503.1| - 8.1e-05 22.9 9.5 0.0038 17.5 1.5 2.3 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) Orai-1 PF07856.12 gi|389846264|ref|YP_006348503.1| - 0.0051 16.5 2.6 0.0051 16.5 2.6 2.0 2 1 1 3 3 3 1 Mediator of CRAC channel activity MASE1 PF05231.14 gi|389846264|ref|YP_006348503.1| - 0.0072 15.5 15.8 0.0098 15.1 15.8 1.2 1 0 0 1 1 1 1 MASE1 Cytochrom_B561 PF03188.16 gi|389846264|ref|YP_006348503.1| - 0.017 15.3 0.6 0.017 15.3 0.6 2.4 2 1 0 3 3 3 0 Eukaryotic cytochrome b561 DUF1980 PF09323.10 gi|389846264|ref|YP_006348503.1| - 0.32 10.9 1.4 0.55 10.1 0.8 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) EMP70 PF02990.16 gi|389846264|ref|YP_006348503.1| - 0.84 8.2 5.9 1.7 7.2 5.9 1.5 1 1 0 1 1 1 0 Endomembrane protein 70 YesK PF14150.6 gi|389846264|ref|YP_006348503.1| - 2.3 8.5 17.2 0.33 11.2 0.5 3.5 4 0 0 4 4 4 0 YesK-like protein Tetraspanin PF00335.20 gi|389846264|ref|YP_006348503.1| - 4.6 6.9 6.4 28 4.3 0.0 2.6 2 1 0 2 2 2 0 Tetraspanin family Glycos_transf_1 PF00534.20 gi|389846265|ref|YP_006348504.1| - 2e-16 60.0 0.0 3.4e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389846265|ref|YP_006348504.1| - 7e-14 52.4 0.1 1.4e-13 51.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389846265|ref|YP_006348504.1| - 5.5e-13 49.3 0.4 2.2e-12 47.3 0.3 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389846265|ref|YP_006348504.1| - 2.1e-12 47.8 6.3 2.1e-12 47.8 6.3 2.5 3 1 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|389846265|ref|YP_006348504.1| - 0.0007 19.6 0.0 0.0026 17.8 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like Copper-bind PF00127.20 gi|389846266|ref|YP_006348505.1| - 8e-14 51.9 0.0 1.5e-13 51.0 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family CytB6-F_Fe-S PF08802.10 gi|389846266|ref|YP_006348505.1| - 0.048 13.7 1.2 0.048 13.7 1.2 2.6 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit M60-like_N PF17291.2 gi|389846266|ref|YP_006348505.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of M60-like peptidases Peptidase_M42 PF05343.14 gi|389846267|ref|YP_006348506.1| - 4.6e-91 304.8 1.7 5.3e-91 304.6 1.7 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|389846267|ref|YP_006348506.1| - 3.4e-09 36.7 0.7 5.4e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|389846267|ref|YP_006348506.1| - 1e-08 35.1 0.1 2.2e-08 34.0 0.1 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 MTH865 PF07747.11 gi|389846268|ref|YP_006348507.1| - 8.8e-30 102.3 0.2 1e-29 102.1 0.2 1.1 1 0 0 1 1 1 1 MTH865-like family PIP49_C PF12260.8 gi|389846269|ref|YP_006348508.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein-kinase domain of FAM69 Peptidase_S9 PF00326.21 gi|389846270|ref|YP_006348509.1| - 7.2e-43 146.5 0.0 1.1e-42 145.9 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|389846270|ref|YP_006348509.1| - 8.1e-13 47.9 8.4 0.00011 22.0 0.1 6.4 6 0 0 6 6 6 3 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|389846270|ref|YP_006348509.1| - 1.4e-12 47.8 0.0 1.4e-07 31.4 0.1 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|389846270|ref|YP_006348509.1| - 1.4e-11 44.3 0.0 4.1e-11 42.9 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|389846270|ref|YP_006348509.1| - 5.9e-11 42.1 0.8 6.7e-06 25.5 0.2 2.5 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|389846270|ref|YP_006348509.1| - 1.4e-10 41.3 0.3 3.8e-05 23.5 0.2 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold AXE1 PF05448.12 gi|389846270|ref|YP_006348509.1| - 2.1e-05 23.4 0.0 0.0019 17.0 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.11 gi|389846270|ref|YP_006348509.1| - 0.00014 21.9 0.0 0.014 15.4 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.20 gi|389846270|ref|YP_006348509.1| - 0.00044 20.0 0.0 0.052 13.2 0.0 2.4 2 0 0 2 2 2 1 Putative esterase Abhydrolase_6 PF12697.7 gi|389846270|ref|YP_006348509.1| - 0.0082 16.8 1.9 0.0082 16.8 1.9 3.1 3 1 0 3 3 3 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|389846270|ref|YP_006348509.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein DPPIV_N PF00930.21 gi|389846270|ref|YP_006348509.1| - 0.017 13.9 0.0 5.1 5.8 0.0 3.7 3 1 0 4 4 4 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.12 gi|389846270|ref|YP_006348509.1| - 0.046 12.5 0.0 0.067 12.0 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Abhydrolase_2 PF02230.16 gi|389846270|ref|YP_006348509.1| - 0.086 12.6 0.0 16 5.2 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Peptidase_S9_N PF02897.15 gi|389846270|ref|YP_006348509.1| - 0.092 11.5 0.0 1.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase, N-terminal beta-propeller domain B12-binding PF02310.19 gi|389846271|ref|YP_006348510.1| - 3.4e-22 78.7 0.3 4e-22 78.5 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain IMPDH PF00478.25 gi|389846271|ref|YP_006348510.1| - 0.088 11.8 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain MeaB PF03308.16 gi|662859383|ref|YP_006348511.2| - 1.6e-92 309.3 5.3 2.2e-92 308.9 5.3 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|662859383|ref|YP_006348511.2| - 3.1e-08 33.4 1.8 2.5e-07 30.5 1.8 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|662859383|ref|YP_006348511.2| - 1.1e-06 28.4 0.5 3.7e-06 26.7 0.5 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|662859383|ref|YP_006348511.2| - 1.9e-05 24.6 0.3 0.00021 21.2 0.1 2.5 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|662859383|ref|YP_006348511.2| - 2.3e-05 24.2 0.6 5.9e-05 22.9 0.1 1.9 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|662859383|ref|YP_006348511.2| - 2.4e-05 24.0 0.0 0.12 11.9 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|662859383|ref|YP_006348511.2| - 4.9e-05 23.9 0.1 0.00013 22.5 0.0 1.7 2 0 0 2 2 1 1 ABC transporter AAA_16 PF13191.6 gi|662859383|ref|YP_006348511.2| - 7.9e-05 23.1 0.5 0.00021 21.7 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|662859383|ref|YP_006348511.2| - 0.00019 21.4 0.1 0.00066 19.6 0.1 1.9 2 0 0 2 2 2 1 NTPase KAP_NTPase PF07693.14 gi|662859383|ref|YP_006348511.2| - 0.00064 19.0 0.0 0.0012 18.1 0.0 1.4 1 0 0 1 1 1 1 KAP family P-loop domain CbiA PF01656.23 gi|662859383|ref|YP_006348511.2| - 0.00094 19.2 0.0 0.002 18.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|662859383|ref|YP_006348511.2| - 0.0023 17.7 0.2 0.0055 16.4 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|662859383|ref|YP_006348511.2| - 0.0034 16.7 0.1 0.009 15.3 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_22 PF13401.6 gi|662859383|ref|YP_006348511.2| - 0.0049 17.2 0.1 0.012 15.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|662859383|ref|YP_006348511.2| - 0.005 16.7 0.0 0.049 13.5 0.0 2.4 3 0 0 3 3 2 1 RsgA GTPase KTI12 PF08433.10 gi|662859383|ref|YP_006348511.2| - 0.0075 15.7 0.4 0.021 14.3 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|662859383|ref|YP_006348511.2| - 0.008 16.7 0.4 0.037 14.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|662859383|ref|YP_006348511.2| - 0.012 15.5 0.1 0.059 13.3 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|662859383|ref|YP_006348511.2| - 0.013 15.7 0.0 0.034 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|662859383|ref|YP_006348511.2| - 0.02 15.0 0.3 0.07 13.2 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Ploopntkinase3 PF18751.1 gi|662859383|ref|YP_006348511.2| - 0.02 14.8 0.1 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 AAA_17 PF13207.6 gi|662859383|ref|YP_006348511.2| - 0.053 13.9 1.5 0.33 11.4 0.1 2.6 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.6 gi|662859383|ref|YP_006348511.2| - 0.057 13.7 1.0 0.12 12.7 0.1 2.0 3 0 0 3 3 2 0 AAA domain AAA_33 PF13671.6 gi|662859383|ref|YP_006348511.2| - 0.061 13.5 0.2 0.16 12.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|662859383|ref|YP_006348511.2| - 0.097 12.0 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 KaiC FeoB_N PF02421.18 gi|662859383|ref|YP_006348511.2| - 0.098 12.2 0.1 3.5 7.1 0.0 2.7 3 1 1 4 4 4 0 Ferrous iron transport protein B Thymidylate_kin PF02223.17 gi|662859383|ref|YP_006348511.2| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase DUF815 PF05673.13 gi|662859383|ref|YP_006348511.2| - 0.12 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|662859383|ref|YP_006348511.2| - 0.12 12.3 0.2 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain PRK PF00485.18 gi|662859383|ref|YP_006348511.2| - 0.13 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|662859383|ref|YP_006348511.2| - 0.14 11.3 0.1 0.33 10.1 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain TrwB_AAD_bind PF10412.9 gi|662859383|ref|YP_006348511.2| - 0.15 11.0 0.1 0.38 9.6 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Abhydrolase_6 PF12697.7 gi|389846273|ref|YP_006348512.1| - 7.6e-19 69.2 2.9 1.2e-18 68.6 2.9 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389846273|ref|YP_006348512.1| - 5.7e-12 45.8 0.0 1.7e-08 34.4 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389846273|ref|YP_006348512.1| - 1.7e-07 30.8 0.0 3.3e-07 29.8 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 OB_aCoA_assoc PF01796.17 gi|389846274|ref|YP_006348513.1| - 8.3e-12 44.9 2.7 1.1e-11 44.5 2.7 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|389846274|ref|YP_006348513.1| - 1.8e-05 24.5 1.4 2.8e-05 23.9 1.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|389846274|ref|YP_006348513.1| - 0.068 12.7 0.2 0.14 11.7 0.2 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|389846274|ref|YP_006348513.1| - 0.093 12.7 0.2 0.16 12.0 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Thiolase_N PF00108.23 gi|389846275|ref|YP_006348514.1| - 1.5e-27 96.6 0.7 2e-27 96.2 0.2 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389846275|ref|YP_006348514.1| - 6.1e-10 38.8 0.2 1.2e-09 37.9 0.2 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389846275|ref|YP_006348514.1| - 4e-09 36.4 6.1 2.8e-08 33.7 1.4 3.2 2 2 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|389846275|ref|YP_006348514.1| - 0.0012 18.9 0.6 0.062 13.3 0.1 2.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|389846275|ref|YP_006348514.1| - 0.14 12.0 3.9 0.64 9.9 0.3 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_M28 PF04389.17 gi|389846276|ref|YP_006348515.1| - 8e-34 117.1 0.2 1.1e-33 116.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|389846276|ref|YP_006348515.1| - 1.5e-15 56.9 0.1 4.1e-15 55.6 0.1 1.7 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|389846276|ref|YP_006348515.1| - 1.5e-05 24.8 0.8 5.5e-05 23.0 0.8 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|389846276|ref|YP_006348515.1| - 5.4e-05 22.4 0.1 8.8e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase NAD_kinase PF01513.21 gi|389846277|ref|YP_006348516.1| - 1.7e-09 37.3 0.2 3.3e-09 36.4 0.2 1.4 1 0 0 1 1 1 1 ATP-NAD kinase Phage_holin_5_2 PF16079.5 gi|389846278|ref|YP_006348517.1| - 0.053 13.9 0.2 0.11 12.8 0.1 1.7 2 1 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF5056 PF16479.5 gi|389846280|ref|YP_006348519.1| - 0.053 13.7 0.7 0.071 13.3 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5056) GPI2 PF06432.11 gi|389846280|ref|YP_006348519.1| - 2.6 7.4 6.8 3.3 7.1 6.8 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase Cytochrom_B_C PF00032.17 gi|389846281|ref|YP_006348520.1| - 1.3e-09 38.2 0.2 3.2e-09 37.0 0.1 1.7 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD MARVEL PF01284.23 gi|389846281|ref|YP_006348520.1| - 0.068 13.2 2.9 0.12 12.4 2.9 1.5 1 1 0 1 1 1 0 Membrane-associating domain Cytochrome_B PF00033.19 gi|389846282|ref|YP_006348521.1| - 3.1e-47 160.9 15.4 4.2e-47 160.4 15.4 1.1 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|389846282|ref|YP_006348521.1| - 7.9e-42 143.1 9.9 6.3e-41 140.2 9.8 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|389846282|ref|YP_006348521.1| - 0.00037 21.0 1.6 0.00037 21.0 1.6 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|389846282|ref|YP_006348521.1| - 0.0074 15.9 17.9 0.0081 15.8 3.1 2.2 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 DUF373 PF04123.13 gi|389846282|ref|YP_006348521.1| - 0.023 14.1 2.5 0.038 13.4 2.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) VMA21 PF09446.10 gi|389846283|ref|YP_006348522.1| - 0.58 10.3 8.2 0.25 11.5 2.4 2.1 1 1 1 2 2 2 0 VMA21-like domain Copper-bind PF00127.20 gi|389846284|ref|YP_006348523.1| - 7.7e-15 55.1 0.0 1.5e-14 54.2 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|389846284|ref|YP_006348523.1| - 0.015 15.2 11.0 0.015 15.2 11.0 2.7 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence M60-like_N PF17291.2 gi|389846284|ref|YP_006348523.1| - 0.037 13.9 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of M60-like peptidases Rab5ip PF07019.12 gi|389846286|ref|YP_006348525.1| - 0.017 15.7 0.4 0.017 15.7 0.4 2.1 2 1 0 2 2 2 0 Rab5-interacting protein (Rab5ip) PepSY_TM PF03929.16 gi|389846286|ref|YP_006348525.1| - 0.037 13.7 0.1 0.037 13.7 0.1 2.0 1 1 1 2 2 2 0 PepSY-associated TM region DUF202 PF02656.15 gi|389846286|ref|YP_006348525.1| - 6.5 7.3 10.2 1.9 9.0 3.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF202) HhH-GPD PF00730.25 gi|389846287|ref|YP_006348526.1| - 5.9e-23 81.4 0.0 8.3e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|389846287|ref|YP_006348526.1| - 1.5e-08 34.1 0.0 3.2e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|389846287|ref|YP_006348526.1| - 5.1e-05 23.5 3.4 8.8e-05 22.7 3.4 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|389846287|ref|YP_006348526.1| - 0.069 13.8 0.2 0.52 11.0 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|389846287|ref|YP_006348526.1| - 0.11 12.4 0.0 0.5 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) AAA PF00004.29 gi|662859384|ref|YP_006348527.2| - 6.9e-46 155.9 2.3 1.2e-45 155.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|662859384|ref|YP_006348527.2| - 5.7e-15 54.9 0.9 1.9e-14 53.2 0.9 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|662859384|ref|YP_006348527.2| - 4.3e-10 40.0 0.4 5.7e-09 36.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|662859384|ref|YP_006348527.2| - 1.6e-07 31.4 0.3 1.9e-06 27.9 0.3 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|662859384|ref|YP_006348527.2| - 7.1e-07 29.1 0.0 1.6e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|662859384|ref|YP_006348527.2| - 4.5e-06 27.2 3.4 0.00025 21.5 0.0 3.2 2 2 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|662859384|ref|YP_006348527.2| - 5.5e-06 26.7 0.3 0.00056 20.2 0.0 2.8 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|662859384|ref|YP_006348527.2| - 7.1e-05 22.1 0.0 0.00016 21.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Prot_ATP_ID_OB PF16450.5 gi|662859384|ref|YP_006348527.2| - 8.6e-05 22.4 0.1 0.0002 21.3 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_17 PF13207.6 gi|662859384|ref|YP_006348527.2| - 0.0001 22.8 8.2 0.045 14.2 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|662859384|ref|YP_006348527.2| - 0.00018 21.6 0.5 0.0019 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|662859384|ref|YP_006348527.2| - 0.00045 20.8 2.8 0.0032 18.0 0.0 3.0 3 1 0 3 3 3 1 AAA domain Mg_chelatase PF01078.21 gi|662859384|ref|YP_006348527.2| - 0.0012 18.3 0.1 0.0038 16.6 0.1 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|662859384|ref|YP_006348527.2| - 0.0024 17.6 0.1 0.03 14.0 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|662859384|ref|YP_006348527.2| - 0.0033 17.2 0.2 0.0091 15.7 0.0 1.8 2 0 0 2 2 1 1 IstB-like ATP binding protein GrpE PF01025.19 gi|662859384|ref|YP_006348527.2| - 0.0035 17.0 12.7 0.0037 16.9 10.8 2.0 2 1 0 2 2 1 1 GrpE TIP49 PF06068.13 gi|662859384|ref|YP_006348527.2| - 0.0035 16.6 3.1 0.0046 16.2 0.1 2.3 2 2 0 2 2 2 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|662859384|ref|YP_006348527.2| - 0.0035 17.1 0.1 0.0035 17.1 0.1 3.2 3 1 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|662859384|ref|YP_006348527.2| - 0.0036 17.7 0.0 0.012 16.0 0.0 1.9 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.6 gi|662859384|ref|YP_006348527.2| - 0.0045 17.3 0.4 0.014 15.7 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|662859384|ref|YP_006348527.2| - 0.0062 16.7 0.2 0.027 14.6 0.0 2.3 2 1 1 3 3 1 1 AAA domain NACHT PF05729.12 gi|662859384|ref|YP_006348527.2| - 0.0085 16.0 0.1 0.08 12.9 0.1 2.4 1 1 0 1 1 1 1 NACHT domain AAA_3 PF07726.11 gi|662859384|ref|YP_006348527.2| - 0.013 15.4 0.2 0.071 13.0 0.0 2.4 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|662859384|ref|YP_006348527.2| - 0.014 14.9 0.6 0.034 13.6 0.1 2.0 2 1 0 2 2 1 0 P-loop containing dynein motor region DUF2334 PF10096.9 gi|662859384|ref|YP_006348527.2| - 0.015 14.9 0.1 0.026 14.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) TsaE PF02367.17 gi|662859384|ref|YP_006348527.2| - 0.02 14.9 0.0 0.047 13.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|662859384|ref|YP_006348527.2| - 0.024 14.2 7.8 0.21 11.2 0.1 3.6 2 2 1 3 3 3 0 AAA domain Creatininase PF02633.14 gi|662859384|ref|YP_006348527.2| - 0.027 14.0 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase Parvo_NS1 PF01057.17 gi|662859384|ref|YP_006348527.2| - 0.036 13.1 0.0 0.08 12.0 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Fmp27_WPPW PF10359.9 gi|662859384|ref|YP_006348527.2| - 0.049 12.5 7.0 0.089 11.6 7.0 1.5 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Sigma54_activ_2 PF14532.6 gi|662859384|ref|YP_006348527.2| - 0.052 13.7 0.1 0.24 11.5 0.0 2.1 2 0 0 2 2 1 0 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|662859384|ref|YP_006348527.2| - 0.052 13.4 4.0 0.58 10.0 0.0 3.2 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|662859384|ref|YP_006348527.2| - 0.063 12.6 8.4 0.28 10.5 0.0 3.4 2 1 1 3 3 3 0 KaiC Atg14 PF10186.9 gi|662859384|ref|YP_006348527.2| - 0.083 12.0 2.0 0.12 11.4 2.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|662859384|ref|YP_006348527.2| - 0.084 13.0 12.6 0.23 11.6 2.0 2.8 1 1 1 2 2 2 0 bZIP transcription factor SHE3 PF17078.5 gi|662859384|ref|YP_006348527.2| - 0.13 12.0 10.2 0.23 11.2 10.2 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Cep57_CLD_2 PF14197.6 gi|662859384|ref|YP_006348527.2| - 0.14 12.3 10.0 0.42 10.7 10.0 1.8 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 AAA_11 PF13086.6 gi|662859384|ref|YP_006348527.2| - 0.19 11.5 0.1 0.19 11.5 0.1 2.4 1 1 1 2 2 2 0 AAA domain Mgr1 PF08602.10 gi|662859384|ref|YP_006348527.2| - 0.32 9.8 3.4 0.63 8.8 3.4 1.4 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit NTPase_1 PF03266.15 gi|662859384|ref|YP_006348527.2| - 0.37 10.7 5.8 1 9.2 0.1 3.5 2 2 1 4 4 4 0 NTPase YabA PF06156.13 gi|662859384|ref|YP_006348527.2| - 0.48 11.1 10.2 40 4.9 0.0 3.0 1 1 2 3 3 3 0 Initiation control protein YabA ABC_tran PF00005.27 gi|662859384|ref|YP_006348527.2| - 0.52 10.8 0.0 0.52 10.8 0.0 2.8 2 1 0 2 2 1 0 ABC transporter APG6_N PF17675.1 gi|662859384|ref|YP_006348527.2| - 3.1 8.3 15.4 0.19 12.3 8.5 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region SlyX PF04102.12 gi|662859384|ref|YP_006348527.2| - 3.5 8.3 10.5 12 6.6 8.5 2.9 2 1 0 2 2 1 0 SlyX ADIP PF11559.8 gi|662859384|ref|YP_006348527.2| - 4.5 7.3 13.8 0.28 11.2 8.2 1.7 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding FlaC_arch PF05377.11 gi|662859384|ref|YP_006348527.2| - 5.8 7.4 6.8 37 4.8 0.1 3.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GAS PF13851.6 gi|662859384|ref|YP_006348527.2| - 6.4 6.1 17.5 3.8 6.8 15.0 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding ZapB PF06005.12 gi|662859384|ref|YP_006348527.2| - 9.5 6.7 19.0 33 5.0 14.6 3.6 3 1 0 3 3 2 0 Cell division protein ZapB HTH_24 PF13412.6 gi|389846289|ref|YP_006348528.1| - 1.5e-06 27.7 0.0 2.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389846289|ref|YP_006348528.1| - 5.3e-05 23.0 0.0 7.9e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389846289|ref|YP_006348528.1| - 9.2e-05 22.3 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|389846289|ref|YP_006348528.1| - 0.00027 20.5 0.0 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|389846289|ref|YP_006348528.1| - 0.0025 17.4 0.0 0.0062 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|389846289|ref|YP_006348528.1| - 0.0038 17.1 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|389846289|ref|YP_006348528.1| - 0.0077 16.2 0.0 0.0093 15.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|389846289|ref|YP_006348528.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|389846289|ref|YP_006348528.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|389846289|ref|YP_006348528.1| - 0.013 15.6 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|389846289|ref|YP_006348528.1| - 0.024 15.0 0.0 0.032 14.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|389846289|ref|YP_006348528.1| - 0.027 14.3 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rhomboid_SP PF12595.8 gi|389846290|ref|YP_006348529.1| - 0.051 12.9 0.3 0.074 12.4 0.3 1.2 1 0 0 1 1 1 0 Rhomboid serine protease Metallophos PF00149.28 gi|389846291|ref|YP_006348530.1| - 3e-12 47.5 1.2 4.9e-12 46.8 1.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|389846291|ref|YP_006348530.1| - 6.3e-12 46.0 1.9 1.6e-11 44.7 1.9 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_23 PF13476.6 gi|389846292|ref|YP_006348531.1| - 1.3e-21 78.1 7.2 1.3e-21 78.1 7.2 6.1 1 1 1 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|389846292|ref|YP_006348531.1| - 5.7e-17 62.5 0.0 1.1e-13 51.7 0.0 3.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|389846292|ref|YP_006348531.1| - 3.8e-11 42.8 44.5 5.9e-10 39.0 44.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|389846292|ref|YP_006348531.1| - 2.2e-07 31.0 17.9 0.00052 19.9 8.1 3.7 3 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|389846292|ref|YP_006348531.1| - 3.4e-06 26.8 0.0 3.4e-06 26.8 0.0 5.7 5 2 1 7 7 5 1 AAA domain AAA_29 PF13555.6 gi|389846292|ref|YP_006348531.1| - 6.1e-06 25.9 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.8 gi|389846292|ref|YP_006348531.1| - 1.9e-05 22.5 90.1 0.024 12.2 42.0 3.3 3 0 0 3 3 3 3 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|389846292|ref|YP_006348531.1| - 4.9e-05 23.4 19.1 0.032 14.3 1.1 6.2 4 1 3 7 7 7 2 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.9 gi|389846292|ref|YP_006348531.1| - 5.5e-05 22.4 67.1 0.0022 17.1 8.1 5.3 2 2 2 4 4 3 3 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 gi|389846292|ref|YP_006348531.1| - 0.045 14.4 1.0 0.045 14.4 1.0 9.1 6 3 4 11 11 10 0 SlyX AAA_13 PF13166.6 gi|389846292|ref|YP_006348531.1| - 0.065 11.9 66.3 0.21 10.2 19.7 5.7 2 1 3 5 5 5 0 AAA domain ABC_tran PF00005.27 gi|389846292|ref|YP_006348531.1| - 0.22 12.0 0.0 0.22 12.0 0.0 5.2 3 2 0 3 3 3 0 ABC transporter DUF1664 PF07889.12 gi|389846292|ref|YP_006348531.1| - 0.41 10.7 43.8 0.14 12.1 0.6 7.2 2 2 6 8 8 8 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|389846292|ref|YP_006348531.1| - 1.3 9.6 27.7 1.4 9.4 0.2 6.8 5 2 0 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 gi|389846292|ref|YP_006348531.1| - 1.4 9.5 52.0 0.03 14.8 2.3 7.0 3 3 3 6 6 6 0 Protein of unknown function DUF16 MukB PF04310.12 gi|389846292|ref|YP_006348531.1| - 1.8 8.3 6.0 1.4 8.7 0.0 3.2 3 1 0 3 3 3 0 MukB N-terminal AAA_22 PF13401.6 gi|389846292|ref|YP_006348531.1| - 2.3 8.5 0.0 2.3 8.5 0.0 4.2 4 1 0 4 4 3 0 AAA domain Spc7 PF08317.11 gi|389846292|ref|YP_006348531.1| - 3 6.6 102.3 2.6 6.9 16.7 6.3 2 2 4 6 6 6 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|389846292|ref|YP_006348531.1| - 3.7 7.7 39.5 0.042 14.0 6.1 5.4 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family MHB PF16525.5 gi|389846292|ref|YP_006348531.1| - 5.7 7.3 7.7 3.6 7.9 0.3 3.9 3 1 1 4 4 4 0 Haemophore, haem-binding DNA_pol_B PF00136.21 gi|389846296|ref|YP_006348535.1| - 1.3e-48 165.9 0.0 2e-48 165.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|389846296|ref|YP_006348535.1| - 4.8e-22 78.5 0.0 2.9e-15 56.3 0.0 3.1 2 1 0 2 2 2 2 DNA polymerase family B, exonuclease domain Intein_splicing PF14890.6 gi|389846296|ref|YP_006348535.1| - 2.5e-14 53.4 0.2 1.3e-13 51.1 0.0 2.2 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|389846296|ref|YP_006348535.1| - 1.2e-07 31.9 0.0 0.00082 19.6 0.0 2.6 2 0 0 2 2 2 2 LAGLIDADG-like domain Hom_end_hint PF05203.16 gi|389846296|ref|YP_006348535.1| - 4.5e-07 30.1 0.2 4.5e-07 30.1 0.2 2.1 2 0 0 2 2 2 1 Hom_end-associated Hint Hint PF01079.20 gi|389846296|ref|YP_006348535.1| - 2.5e-05 23.9 0.0 5.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Hint module Hom_end PF05204.14 gi|389846296|ref|YP_006348535.1| - 7.9e-05 22.8 0.0 0.035 14.3 0.0 2.5 2 0 0 2 2 2 2 Homing endonuclease DNA_pol_B_2 PF03175.13 gi|389846296|ref|YP_006348535.1| - 0.027 13.3 0.0 0.67 8.7 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral ABC_tran PF00005.27 gi|389846297|ref|YP_006348536.1| - 2.6e-15 57.1 0.0 9e-15 55.4 0.0 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|389846297|ref|YP_006348536.1| - 8.8e-06 25.3 1.1 0.025 14.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|389846297|ref|YP_006348536.1| - 0.00014 21.8 0.0 0.04 13.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|389846297|ref|YP_006348536.1| - 0.0022 18.4 0.1 1.8 9.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|389846297|ref|YP_006348536.1| - 0.0038 16.9 0.1 0.0071 16.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|389846297|ref|YP_006348536.1| - 0.0075 16.3 0.1 1.7 8.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|389846297|ref|YP_006348536.1| - 0.051 12.2 0.0 0.068 11.8 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|389846297|ref|YP_006348536.1| - 0.052 14.1 0.6 0.51 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|389846297|ref|YP_006348536.1| - 0.052 13.5 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|389846297|ref|YP_006348536.1| - 0.078 13.2 0.0 1.3 9.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|389846297|ref|YP_006348536.1| - 0.088 12.4 0.2 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|389846298|ref|YP_006348537.1| - 1.3e-72 244.1 0.9 1.7e-72 243.6 0.9 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF3126 PF11324.8 gi|389846298|ref|YP_006348537.1| - 0.078 12.8 0.3 0.23 11.3 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3126) UPF0051 PF01458.17 gi|389846299|ref|YP_006348538.1| - 3.2e-65 219.9 0.9 4e-65 219.6 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF445 PF04286.12 gi|662859385|ref|YP_006348539.2| - 0.0073 16.1 0.3 0.0085 15.9 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Rubrerythrin PF02915.17 gi|662859385|ref|YP_006348539.2| - 0.08 13.3 8.5 0.028 14.8 3.4 2.2 1 1 1 2 2 2 0 Rubrerythrin Fe_dep_repress PF01325.19 gi|389846301|ref|YP_006348540.1| - 3.8e-16 59.0 0.3 9.4e-16 57.8 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|389846301|ref|YP_006348540.1| - 9.9e-10 38.4 0.7 3e-09 36.8 0.0 2.1 3 0 0 3 3 3 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|389846301|ref|YP_006348540.1| - 0.00023 21.0 0.0 0.00046 20.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389846301|ref|YP_006348540.1| - 0.00082 19.2 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|389846301|ref|YP_006348540.1| - 0.0009 19.2 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|389846301|ref|YP_006348540.1| - 0.0014 18.5 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|389846301|ref|YP_006348540.1| - 0.01 16.3 0.0 0.022 15.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|389846301|ref|YP_006348540.1| - 0.017 14.6 0.0 0.046 13.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|389846301|ref|YP_006348540.1| - 0.047 13.4 0.0 0.11 12.1 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|389846301|ref|YP_006348540.1| - 0.13 12.7 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF4423 PF14394.6 gi|389846301|ref|YP_006348540.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DUF5006 PF16397.5 gi|389846303|ref|YP_006348542.1| - 0.025 13.8 0.3 0.036 13.3 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5006) SOG2 PF10428.9 gi|389846303|ref|YP_006348542.1| - 3.1 6.9 16.6 3.7 6.6 16.6 1.0 1 0 0 1 1 1 0 RAM signalling pathway protein Beta_helix PF13229.6 gi|389846304|ref|YP_006348543.1| - 0.017 15.0 2.4 0.14 12.0 2.4 2.4 1 1 0 1 1 1 0 Right handed beta helix region SBF PF01758.16 gi|389846306|ref|YP_006348545.1| - 7.4e-12 45.4 13.4 1.1e-11 44.8 13.4 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|389846306|ref|YP_006348545.1| - 8.7e-10 38.4 14.5 1.1e-09 38.1 14.5 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) DUF3177 PF11375.8 gi|389846306|ref|YP_006348545.1| - 0.058 13.2 2.4 0.11 12.3 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) Methyltransf_21 PF05050.12 gi|389846307|ref|YP_006348546.1| - 1.5e-19 70.7 0.0 2e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|389846307|ref|YP_006348546.1| - 3.6e-09 36.3 0.0 4.4e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|389846307|ref|YP_006348546.1| - 3.7e-06 26.8 0.0 5.3e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|389846307|ref|YP_006348546.1| - 0.00037 20.1 0.1 0.00059 19.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|389846307|ref|YP_006348546.1| - 0.00065 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389846307|ref|YP_006348546.1| - 0.0013 19.4 0.0 0.0023 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|389846307|ref|YP_006348546.1| - 0.0024 17.4 0.0 0.0035 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|389846307|ref|YP_006348546.1| - 0.0033 17.4 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.16 gi|389846307|ref|YP_006348546.1| - 0.0075 16.1 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase PCMT PF01135.19 gi|389846307|ref|YP_006348546.1| - 0.013 15.2 0.0 0.027 14.2 0.0 1.5 1 1 1 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|389846307|ref|YP_006348546.1| - 0.041 14.6 0.0 0.074 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846307|ref|YP_006348546.1| - 0.041 13.7 0.0 0.11 12.3 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain FtsJ PF01728.19 gi|389846307|ref|YP_006348546.1| - 0.19 11.8 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|389846307|ref|YP_006348546.1| - 0.21 10.5 0.0 0.31 9.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|389846307|ref|YP_006348546.1| - 0.3 10.4 1.0 0.45 9.9 1.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF3179 PF11376.8 gi|389846308|ref|YP_006348547.1| - 3.1e-79 266.3 0.0 3.8e-79 266.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) tRNA-synt_2c PF01411.19 gi|662859386|ref|YP_006348548.2| - 1.9e-12 46.5 0.0 2.4e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|662859386|ref|YP_006348548.2| - 1e-09 38.4 0.4 1.6e-09 37.7 0.4 1.3 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Big_4 PF07532.11 gi|662859386|ref|YP_006348548.2| - 1.2 8.9 5.8 4.7 7.0 0.0 3.5 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 4) HD PF01966.22 gi|389846310|ref|YP_006348549.1| - 2.6e-16 59.9 2.6 4.7e-16 59.1 1.1 1.9 2 0 0 2 2 2 1 HD domain TraI_2 PF07514.11 gi|389846310|ref|YP_006348549.1| - 0.077 11.9 0.1 0.11 11.4 0.1 1.5 1 1 0 1 1 1 0 Putative helicase Epimerase PF01370.21 gi|389846311|ref|YP_006348550.1| - 1.6e-30 106.3 0.1 7e-16 58.4 0.1 2.2 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389846311|ref|YP_006348550.1| - 7.1e-11 42.1 0.0 7.4e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|389846311|ref|YP_006348550.1| - 1.6e-08 34.7 0.0 2.8e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|389846311|ref|YP_006348550.1| - 1.9e-08 33.6 0.0 0.00081 18.5 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|389846311|ref|YP_006348550.1| - 3.3e-05 23.2 0.0 0.02 14.1 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|389846311|ref|YP_006348550.1| - 0.0002 20.6 0.0 0.038 13.1 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain adh_short PF00106.25 gi|389846311|ref|YP_006348550.1| - 0.068 12.6 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 short chain dehydrogenase LUC7 PF03194.15 gi|389846312|ref|YP_006348551.1| - 0.062 13.0 0.1 0.067 12.8 0.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus MazG PF03819.17 gi|389846312|ref|YP_006348551.1| - 0.69 10.1 5.0 6.7 7.0 5.0 2.2 1 1 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain GATase_2 PF00310.21 gi|662859387|ref|YP_006348552.2| - 4.4e-156 519.8 0.0 6e-156 519.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|662859387|ref|YP_006348552.2| - 6.3e-150 499.4 0.3 1.2e-148 495.1 0.1 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|662859387|ref|YP_006348552.2| - 1.7e-114 382.0 0.0 9.2e-114 379.6 0.0 2.0 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|662859387|ref|YP_006348552.2| - 5.6e-77 257.7 7.4 1e-76 256.8 7.4 1.4 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.18 gi|662859387|ref|YP_006348552.2| - 0.00021 20.4 3.8 0.0033 16.5 1.6 3.0 3 0 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|662859387|ref|YP_006348552.2| - 0.0053 16.2 0.4 0.011 15.2 0.4 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase HGTP_anticodon PF03129.20 gi|389846314|ref|YP_006348553.1| - 3.7e-23 81.5 0.4 8e-23 80.4 0.4 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|389846314|ref|YP_006348553.1| - 2.1e-20 72.7 0.3 5.4e-20 71.4 0.3 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.25 gi|389846314|ref|YP_006348553.1| - 1.3e-19 70.9 0.0 2.9e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TIR_2 PF13676.6 gi|389846314|ref|YP_006348553.1| - 0.15 12.7 0.9 1.1 9.9 0.1 2.6 3 0 0 3 3 3 0 TIR domain KH_7 PF17214.3 gi|389846317|ref|YP_006348556.1| - 4.4e-31 106.6 1.0 6.1e-30 103.0 0.3 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|389846317|ref|YP_006348556.1| - 1.3e-20 73.8 0.0 2.4e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|389846317|ref|YP_006348556.1| - 4.6e-16 58.5 0.0 1.5e-15 56.9 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|389846317|ref|YP_006348556.1| - 3.9e-12 46.6 2.7 1.5e-11 44.7 2.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|389846317|ref|YP_006348556.1| - 1.4e-11 44.2 0.0 2.3e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|389846317|ref|YP_006348556.1| - 1.9e-08 34.1 0.1 3.3e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|389846317|ref|YP_006348556.1| - 7e-08 32.2 0.0 6.3e-06 25.9 0.0 2.5 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|389846317|ref|YP_006348556.1| - 0.00087 19.2 0.4 0.0017 18.3 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|389846317|ref|YP_006348556.1| - 0.0072 16.1 0.0 0.064 13.1 0.0 2.5 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|389846317|ref|YP_006348556.1| - 0.039 13.8 0.1 0.094 12.6 0.1 1.6 1 0 0 1 1 1 0 KH domain Pilin_N PF07790.11 gi|662859388|ref|YP_006348557.2| - 9.5e-06 26.5 6.8 2.1e-05 25.3 4.6 2.4 2 1 0 2 2 2 1 Archaeal Type IV pilin, N-terminal MGS PF02142.22 gi|389846319|ref|YP_006348558.1| - 2.9e-13 49.8 0.0 3.4e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain HhH-GPD PF00730.25 gi|389846321|ref|YP_006348560.1| - 2.6e-18 66.4 0.0 3.7e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|389846321|ref|YP_006348560.1| - 2.8e-05 24.3 4.5 6.1e-05 23.2 4.5 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|389846321|ref|YP_006348560.1| - 0.0038 17.0 0.0 0.013 15.4 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|389846321|ref|YP_006348560.1| - 0.032 14.9 0.0 0.084 13.5 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|389846321|ref|YP_006348560.1| - 0.24 11.4 0.0 0.36 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF371 PF04027.13 gi|662859389|ref|YP_006348561.2| - 4.6e-51 172.3 0.1 5.1e-51 172.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF948 PF06103.11 gi|389846323|ref|YP_006348562.1| - 0.26 11.6 20.7 0.19 12.0 0.9 4.1 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) YtxH PF12732.7 gi|389846323|ref|YP_006348562.1| - 7.3 7.2 26.6 1.8e+04 -15.0 26.6 4.8 1 1 0 1 1 1 0 YtxH-like protein Peptidase_S49 PF01343.18 gi|389846324|ref|YP_006348563.1| - 2.2e-42 144.6 0.0 3.3e-42 144.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|389846324|ref|YP_006348563.1| - 0.011 14.7 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase DUF2104 PF09877.9 gi|389846324|ref|YP_006348563.1| - 0.091 13.0 1.0 0.16 12.2 1.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2104) CLP_protease PF00574.23 gi|389846324|ref|YP_006348563.1| - 0.095 12.6 0.0 1 9.2 0.0 2.1 2 0 0 2 2 2 0 Clp protease DUF373 PF04123.13 gi|389846325|ref|YP_006348564.1| - 4.8e-114 381.3 4.3 5.6e-114 381.1 4.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) CbiG_N PF11760.8 gi|389846325|ref|YP_006348564.1| - 0.017 15.1 0.5 5.3 7.1 0.3 2.8 2 1 0 2 2 2 0 Cobalamin synthesis G N-terminal MFS_2 PF13347.6 gi|389846325|ref|YP_006348564.1| - 0.087 11.4 6.9 0.081 11.5 4.6 1.8 2 0 0 2 2 2 0 MFS/sugar transport protein EI24 PF07264.11 gi|389846325|ref|YP_006348564.1| - 9.2 6.5 11.5 16 5.7 11.5 1.4 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF3357 PF11837.8 gi|662859390|ref|YP_006348565.2| - 4.1 7.9 5.3 35 4.9 3.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3357) Aldo_ket_red PF00248.21 gi|389846327|ref|YP_006348566.1| - 1.7e-62 211.3 0.1 2.4e-60 204.2 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.20 gi|389846327|ref|YP_006348566.1| - 0.0098 16.2 0.1 6.6 7.1 0.0 3.2 3 0 0 3 3 3 1 Transposase Zn_ribbon_SprT PF17283.2 gi|389846328|ref|YP_006348567.1| - 0.0073 16.2 1.4 0.31 11.0 0.1 2.1 2 0 0 2 2 2 1 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|389846328|ref|YP_006348567.1| - 0.025 14.4 0.6 7.3 6.5 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|389846328|ref|YP_006348567.1| - 0.025 14.5 0.7 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|389846328|ref|YP_006348567.1| - 0.034 14.3 1.4 0.16 12.1 1.7 1.8 1 1 1 2 2 2 0 Zinc ribbon domain NCD3G PF07562.14 gi|389846328|ref|YP_006348567.1| - 0.048 13.6 0.2 0.05 13.6 0.2 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zinc_ribbon_5 PF13719.6 gi|389846328|ref|YP_006348567.1| - 0.08 12.7 0.3 1.8 8.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|389846328|ref|YP_006348567.1| - 0.089 12.2 1.9 9.2 5.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|389846328|ref|YP_006348567.1| - 0.095 12.4 1.7 0.31 10.7 1.7 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Elf1 PF05129.13 gi|389846328|ref|YP_006348567.1| - 0.099 12.7 0.1 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TPP_enzyme_C PF02775.21 gi|389846330|ref|YP_006348569.1| - 8e-32 110.1 0.4 1.2e-31 109.5 0.4 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|389846330|ref|YP_006348569.1| - 1.8e-18 66.5 1.3 3.3e-18 65.6 1.3 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|389846331|ref|YP_006348570.1| - 2e-58 197.9 0.3 3e-58 197.3 0.3 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|389846331|ref|YP_006348570.1| - 7.4e-41 140.1 0.3 1.6e-40 139.0 0.3 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|389846331|ref|YP_006348570.1| - 3.9e-05 23.3 0.6 7.4e-05 22.4 0.6 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|389846331|ref|YP_006348570.1| - 0.0033 17.7 0.0 0.0078 16.5 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|389846331|ref|YP_006348570.1| - 0.012 15.4 0.0 0.034 14.0 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain FAD_binding_6 PF00970.24 gi|389846332|ref|YP_006348571.1| - 8.1e-11 42.2 0.0 1.1e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain ABC2_membrane_2 PF12679.7 gi|389846333|ref|YP_006348572.1| - 1.9e-07 30.7 26.4 7.3e-06 25.5 26.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|389846333|ref|YP_006348572.1| - 5.8e-06 25.9 8.6 1e-05 25.1 8.6 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|389846333|ref|YP_006348572.1| - 0.00029 20.1 9.0 0.00029 20.1 9.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389846334|ref|YP_006348573.1| - 5.9e-27 94.9 0.0 9.8e-27 94.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389846334|ref|YP_006348573.1| - 1.7e-16 61.0 0.3 2.3e-09 37.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389846334|ref|YP_006348573.1| - 7.2e-05 23.1 0.0 0.00033 20.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389846334|ref|YP_006348573.1| - 0.00016 21.3 0.1 0.00031 20.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389846334|ref|YP_006348573.1| - 0.00033 21.1 0.1 0.00064 20.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|389846334|ref|YP_006348573.1| - 0.00053 20.5 0.0 0.00081 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389846334|ref|YP_006348573.1| - 0.00068 19.1 0.0 0.048 13.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389846334|ref|YP_006348573.1| - 0.0007 19.4 0.0 0.0096 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|389846334|ref|YP_006348573.1| - 0.0057 16.4 0.0 0.019 14.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389846334|ref|YP_006348573.1| - 0.01 16.0 0.0 0.029 14.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|389846334|ref|YP_006348573.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|389846334|ref|YP_006348573.1| - 0.029 14.3 0.0 0.046 13.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|389846334|ref|YP_006348573.1| - 0.033 14.3 1.0 0.084 13.0 0.2 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.6 gi|389846334|ref|YP_006348573.1| - 0.069 13.4 0.0 2.5 8.4 0.0 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|389846334|ref|YP_006348573.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|389846334|ref|YP_006348573.1| - 0.12 12.9 0.1 0.28 11.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|389846334|ref|YP_006348573.1| - 0.15 11.7 0.1 0.29 10.7 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|389846334|ref|YP_006348573.1| - 0.23 10.1 0.0 1.1 7.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain NosD PF05048.13 gi|662859391|ref|YP_006348574.2| - 1e-32 113.3 2.3 1.2e-29 103.3 1.2 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|662859391|ref|YP_006348574.2| - 5.1e-26 91.4 9.9 7.1e-15 55.2 3.1 2.4 1 1 2 3 3 3 3 Right handed beta helix region NosL PF05573.12 gi|662859391|ref|YP_006348574.2| - 2.4e-14 53.8 0.7 9.1e-14 51.9 0.1 2.2 3 0 0 3 3 3 1 NosL Pectate_lyase_3 PF12708.7 gi|662859391|ref|YP_006348574.2| - 4.6e-13 49.5 5.6 6.5e-11 42.5 0.6 2.5 1 1 0 2 2 2 2 Pectate lyase superfamily protein MM_CoA_mutase PF01642.22 gi|389846336|ref|YP_006348575.1| - 6.4e-213 707.9 0.1 7.4e-213 707.8 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|389846336|ref|YP_006348575.1| - 0.0013 17.3 0.0 0.002 16.7 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) Snf7 PF03357.21 gi|389846336|ref|YP_006348575.1| - 3 7.4 9.5 6.8 6.3 3.9 2.3 2 0 0 2 2 2 0 Snf7 CRISPR_assoc PF08798.11 gi|389846337|ref|YP_006348576.1| - 0.0052 16.9 0.0 0.008 16.3 0.0 1.3 1 0 0 1 1 1 1 CRISPR associated protein 3-PAP PF12578.8 gi|389846337|ref|YP_006348576.1| - 0.12 12.2 0.1 0.34 10.7 0.0 1.7 2 0 0 2 2 2 0 Myotubularin-associated protein DUF4135 PF13575.6 gi|389846338|ref|YP_006348577.1| - 5.5e-91 305.7 0.0 7.5e-91 305.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.13 gi|389846338|ref|YP_006348577.1| - 5.2e-58 196.3 0.0 6.8e-58 195.9 0.0 1.1 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein AMP-binding PF00501.28 gi|389846339|ref|YP_006348578.1| - 1.4e-90 303.9 0.0 1.7e-90 303.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389846339|ref|YP_006348578.1| - 8.7e-23 81.1 1.5 1.7e-22 80.1 1.5 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|389846339|ref|YP_006348578.1| - 5.1e-16 58.3 2.5 5.1e-16 58.3 2.5 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Peripla_BP_6 PF13458.6 gi|389846342|ref|YP_006348581.1| - 3.8e-09 36.7 0.0 4.4e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein SF3A3 PF16837.5 gi|389846342|ref|YP_006348581.1| - 0.0015 19.0 0.2 0.0018 18.7 0.2 1.1 1 0 0 1 1 1 1 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 Usp PF00582.26 gi|389846343|ref|YP_006348582.1| - 5.9e-19 69.0 0.3 1.6e-18 67.6 0.3 1.6 1 1 0 1 1 1 1 Universal stress protein family ETC_C1_NDUFA4 PF04800.12 gi|389846343|ref|YP_006348582.1| - 0.16 12.3 0.0 0.37 11.1 0.0 1.8 1 1 0 1 1 1 0 ETC complex I subunit conserved region PepSY_TM PF03929.16 gi|389846345|ref|YP_006348584.1| - 4.3 6.9 4.9 5.6 6.5 4.9 1.2 1 0 0 1 1 1 0 PepSY-associated TM region COX1 PF00115.20 gi|662859394|ref|YP_006348585.2| - 1.2e-147 492.2 61.3 1.2e-147 492.2 61.3 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I CbiQ PF02361.16 gi|389846347|ref|YP_006348586.1| - 0.052 13.2 0.4 0.055 13.1 0.4 1.0 1 0 0 1 1 1 0 Cobalt transport protein DUF3007 PF11460.8 gi|389846347|ref|YP_006348586.1| - 0.11 12.7 1.4 0.17 12.2 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Cyt_c_ox_IV PF12270.8 gi|389846348|ref|YP_006348587.1| - 0.47 10.6 8.6 0.1 12.8 1.3 2.1 1 1 0 2 2 2 0 Cytochrome c oxidase subunit IV CD20 PF04103.15 gi|389846348|ref|YP_006348587.1| - 7.6 6.6 11.5 6 6.9 2.6 2.1 1 1 1 2 2 2 0 CD20-like family MMR_HSR1_Xtn PF16897.5 gi|389846350|ref|YP_006348589.1| - 1.3e-29 102.3 0.0 2.7e-29 101.3 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|389846350|ref|YP_006348589.1| - 1.1e-22 80.3 0.0 2.1e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|389846350|ref|YP_006348589.1| - 2.9e-14 52.9 0.3 2.9e-12 46.4 0.0 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.21 gi|389846350|ref|YP_006348589.1| - 3.5e-14 52.6 0.1 7.4e-14 51.5 0.1 1.6 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|389846350|ref|YP_006348589.1| - 1.2e-07 31.7 1.1 0.0064 16.4 0.1 3.1 3 2 1 4 4 4 2 RsgA GTPase Dynamin_N PF00350.23 gi|389846350|ref|YP_006348589.1| - 0.00014 21.9 0.0 0.11 12.5 0.0 2.5 1 1 1 2 2 2 2 Dynamin family MeaB PF03308.16 gi|389846350|ref|YP_006348589.1| - 0.0003 19.9 0.7 0.0061 15.6 0.0 2.5 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|389846350|ref|YP_006348589.1| - 0.00056 19.8 0.0 0.21 11.4 0.0 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|389846350|ref|YP_006348589.1| - 0.0013 18.1 0.0 0.003 16.9 0.0 1.5 2 0 0 2 2 2 1 AIG1 family ABC_tran PF00005.27 gi|389846350|ref|YP_006348589.1| - 0.0042 17.6 0.0 0.069 13.7 0.0 2.3 2 0 0 2 2 2 1 ABC transporter GTP_EFTU PF00009.27 gi|389846350|ref|YP_006348589.1| - 0.0064 16.1 0.0 0.32 10.5 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|389846350|ref|YP_006348589.1| - 0.018 14.5 0.1 0.15 11.5 0.0 2.3 2 1 0 2 2 2 0 ADP-ribosylation factor family ABC_tran_CTD PF16326.5 gi|389846350|ref|YP_006348589.1| - 0.021 15.0 1.3 0.021 15.0 1.3 2.4 4 0 0 4 4 3 0 ABC transporter C-terminal domain ThiS PF02597.20 gi|389846350|ref|YP_006348589.1| - 0.027 15.1 0.3 0.69 10.6 0.0 3.1 3 1 0 3 3 3 0 ThiS family AAA_28 PF13521.6 gi|389846350|ref|YP_006348589.1| - 0.03 14.6 0.1 0.093 13.0 0.1 1.8 1 0 0 1 1 1 0 AAA domain RBD PF02196.15 gi|389846350|ref|YP_006348589.1| - 0.033 14.3 0.0 0.97 9.6 0.0 2.6 2 0 0 2 2 2 0 Raf-like Ras-binding domain cobW PF02492.19 gi|389846350|ref|YP_006348589.1| - 0.036 13.6 0.1 3.4 7.2 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|389846350|ref|YP_006348589.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|389846350|ref|YP_006348589.1| - 0.12 12.2 0.1 0.3 10.9 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain MatE PF01554.18 gi|389846352|ref|YP_006348591.1| - 7.4e-42 142.7 29.0 1.5e-24 86.5 11.1 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|389846352|ref|YP_006348591.1| - 9.6e-11 41.9 7.1 9.6e-11 41.9 7.1 4.4 5 1 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF418 PF04235.12 gi|389846352|ref|YP_006348591.1| - 0.011 15.7 1.0 0.011 15.7 1.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF418) FtsX PF02687.21 gi|389846352|ref|YP_006348591.1| - 0.43 11.1 0.1 0.43 11.1 0.1 4.1 4 1 0 4 4 4 0 FtsX-like permease family Glyoxalase PF00903.25 gi|389846353|ref|YP_006348592.1| - 2.8e-19 69.6 5.9 1e-12 48.4 0.4 2.5 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|389846353|ref|YP_006348592.1| - 1.2e-08 35.6 5.6 0.00013 22.7 0.9 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|389846353|ref|YP_006348592.1| - 2.8e-07 30.8 2.8 0.025 14.8 0.1 3.0 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|389846353|ref|YP_006348592.1| - 0.00022 21.4 4.8 0.14 12.3 0.2 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain Nbs1_C PF08599.10 gi|389846353|ref|YP_006348592.1| - 0.04 14.1 0.3 0.087 13.0 0.3 1.6 1 0 0 1 1 1 0 DNA damage repair protein Nbs1 YecM PF06185.12 gi|389846353|ref|YP_006348592.1| - 0.067 12.8 0.5 10 5.7 0.0 3.2 4 0 0 4 4 4 0 YecM protein PGF-CTERM PF18204.1 gi|389846354|ref|YP_006348593.1| - 3.2e-06 26.9 6.0 6.6e-06 25.9 6.0 1.6 1 0 0 1 1 1 1 PGF-CTERM motif Phage_30_8 PF06019.11 gi|389846354|ref|YP_006348593.1| - 0.092 12.7 4.8 0.04 13.8 1.5 2.1 2 0 0 2 2 2 0 Phage GP30.8 protein Herpes_UL74 PF07982.12 gi|389846354|ref|YP_006348593.1| - 0.17 10.8 5.3 0.43 9.5 5.3 1.6 1 0 0 1 1 1 0 Herpes UL74 glycoproteins Exosortase_EpsH PF09721.10 gi|389846355|ref|YP_006348594.1| - 1e-19 71.1 19.2 1.4e-19 70.7 19.2 1.2 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TP_methylase PF00590.20 gi|389846356|ref|YP_006348595.1| - 3.8e-20 72.8 0.8 4.5e-20 72.5 0.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Sulfatase PF00884.23 gi|389846356|ref|YP_006348595.1| - 0.077 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Sulfatase DUF1178 PF06676.11 gi|389846357|ref|YP_006348596.1| - 0.092 13.1 0.0 0.096 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) CMD PF02627.20 gi|389846359|ref|YP_006348598.1| - 1.2e-11 44.5 0.0 1.9e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Thioredoxin_2 PF13098.6 gi|389846359|ref|YP_006348598.1| - 0.062 13.8 0.0 0.084 13.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain CARDB PF07705.11 gi|389846360|ref|YP_006348599.1| - 4.6e-08 33.2 17.2 0.046 14.0 0.2 4.7 4 0 0 4 4 4 4 CARDB DUF4352 PF11611.8 gi|389846360|ref|YP_006348599.1| - 0.00014 22.1 6.5 0.49 10.7 0.1 4.2 3 1 1 4 4 4 3 Domain of unknown function (DUF4352) BsuPI PF12690.7 gi|389846360|ref|YP_006348599.1| - 0.043 13.8 1.4 2.8 8.0 0.0 3.7 3 0 0 3 3 3 0 Intracellular proteinase inhibitor DUF1833 PF08875.11 gi|389846360|ref|YP_006348599.1| - 0.076 12.5 0.1 0.36 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1833) TAT_signal PF10518.9 gi|389846361|ref|YP_006348600.1| - 0.22 11.4 1.6 0.46 10.4 1.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3952 PF13130.6 gi|389846362|ref|YP_006348601.1| - 0.15 12.3 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3952) DUF4268 PF14088.6 gi|389846366|ref|YP_006348605.1| - 2.9e-27 95.2 4.6 5e-27 94.5 4.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4268) Mit_KHE1 PF10173.9 gi|389846366|ref|YP_006348605.1| - 0.076 13.1 1.0 0.13 12.3 1.0 1.3 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related Amastin PF07344.11 gi|389846367|ref|YP_006348606.1| - 0.0093 15.8 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Amastin surface glycoprotein Phage_integrase PF00589.22 gi|389846368|ref|YP_006348607.1| - 5e-15 55.7 0.0 1.7e-14 54.0 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family DZR PF12773.7 gi|389846368|ref|YP_006348607.1| - 0.0043 17.1 0.2 0.0085 16.1 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF2614 PF11023.8 gi|389846368|ref|YP_006348607.1| - 0.028 14.5 0.2 0.046 13.8 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF287 PF03384.14 gi|389846369|ref|YP_006348608.1| - 0.047 14.1 0.1 0.066 13.6 0.1 1.2 1 0 0 1 1 1 0 Drosophila protein of unknown function, DUF287 HTH_45 PF14947.6 gi|389846374|ref|YP_006348613.1| - 0.0061 16.5 0.0 0.0066 16.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|389846374|ref|YP_006348613.1| - 0.09 13.1 0.0 0.1 13.0 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF1441 PF07278.11 gi|389846375|ref|YP_006348614.1| - 0.042 13.8 0.0 0.042 13.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) DUF2250 PF10007.9 gi|389846375|ref|YP_006348614.1| - 0.052 13.7 0.1 0.067 13.3 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|389846375|ref|YP_006348614.1| - 0.076 13.0 0.0 0.08 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|389846375|ref|YP_006348614.1| - 0.17 12.3 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator AAA_16 PF13191.6 gi|389846376|ref|YP_006348615.1| - 5e-11 43.3 3.1 3.9e-10 40.4 0.2 3.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389846376|ref|YP_006348615.1| - 7e-11 42.6 0.1 4.7e-10 39.9 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|389846376|ref|YP_006348615.1| - 2.1e-06 28.2 0.0 2e-05 25.0 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|389846376|ref|YP_006348615.1| - 8.5e-05 22.5 0.1 0.00021 21.2 0.1 1.7 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|389846376|ref|YP_006348615.1| - 0.00027 20.9 0.1 0.0009 19.3 0.0 1.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|389846376|ref|YP_006348615.1| - 0.00053 20.0 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|389846376|ref|YP_006348615.1| - 0.0013 19.1 1.0 0.007 16.7 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|389846376|ref|YP_006348615.1| - 0.0046 17.3 0.1 0.021 15.1 0.1 2.0 2 0 0 2 2 2 1 AAA C-terminal domain Lambda_CIII PF02061.16 gi|389846376|ref|YP_006348615.1| - 0.0063 16.5 0.5 1.8 8.7 0.0 3.3 3 0 0 3 3 3 1 Lambda Phage CIII ATPase_2 PF01637.18 gi|389846376|ref|YP_006348615.1| - 0.0068 16.4 0.0 0.26 11.2 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|389846376|ref|YP_006348615.1| - 0.015 15.0 0.3 0.17 11.6 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|389846376|ref|YP_006348615.1| - 0.017 15.1 0.9 0.34 10.8 0.1 2.5 2 0 0 2 2 2 0 NTPase T2SSE PF00437.20 gi|389846376|ref|YP_006348615.1| - 0.028 13.5 0.1 0.064 12.3 0.1 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|389846376|ref|YP_006348615.1| - 0.065 13.8 2.6 0.077 13.5 0.8 2.2 2 1 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|389846376|ref|YP_006348615.1| - 0.08 12.7 1.6 9.5 5.9 0.1 2.6 3 0 0 3 3 3 0 DEAD/DEAH box helicase RP-C PF03428.13 gi|389846376|ref|YP_006348615.1| - 0.088 12.5 0.3 0.17 11.5 0.3 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain AAA_7 PF12775.7 gi|389846376|ref|YP_006348615.1| - 0.094 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|389846376|ref|YP_006348615.1| - 0.095 12.4 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389846376|ref|YP_006348615.1| - 0.1 12.4 0.7 0.2 11.4 0.7 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.26 gi|389846376|ref|YP_006348615.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|389846376|ref|YP_006348615.1| - 0.13 11.9 1.9 1.3 8.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|389846376|ref|YP_006348615.1| - 0.52 10.0 4.2 2.5 7.8 2.0 2.8 2 1 0 2 2 2 0 AAA domain AAA_lid_4 PF17864.1 gi|389846376|ref|YP_006348615.1| - 0.66 9.8 3.7 0.44 10.3 0.4 2.2 2 0 0 2 2 2 0 RuvB AAA lid domain Med7 PF05983.11 gi|389846377|ref|YP_006348616.1| - 0.22 11.6 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 MED7 protein TrbC PF04956.13 gi|389846379|ref|YP_006348618.1| - 1 9.6 7.1 0.63 10.3 1.9 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family NADH_oxidored PF08040.11 gi|389846380|ref|YP_006348619.1| - 0.11 12.2 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 MNLL subunit DUF4349 PF14257.6 gi|389846380|ref|YP_006348619.1| - 0.74 9.2 3.0 2.9 7.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) Caps_synth_CapC PF14102.6 gi|389846382|ref|YP_006348621.1| - 0.35 11.3 10.3 1.5 9.3 2.5 2.2 1 1 1 2 2 2 0 Capsule biosynthesis CapC CitMHS PF03600.16 gi|389846383|ref|YP_006348622.1| - 0.01 15.1 0.3 0.013 14.7 0.3 1.2 1 0 0 1 1 1 0 Citrate transporter PLDc_N PF13396.6 gi|389846385|ref|YP_006348624.1| - 0.073 13.0 0.0 0.073 13.0 0.0 3.0 3 0 0 3 3 3 0 Phospholipase_D-nuclease N-terminal Phage_holin_3_7 PF05449.11 gi|389846385|ref|YP_006348624.1| - 0.17 11.9 1.0 0.33 11.0 0.2 1.9 2 0 0 2 2 2 0 Putative 3TM holin, Phage_holin_3 AAA_25 PF13481.6 gi|389846387|ref|YP_006348626.1| - 0.00085 18.9 0.3 0.0029 17.2 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|389846387|ref|YP_006348626.1| - 0.15 11.8 0.1 0.34 10.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|389846387|ref|YP_006348626.1| - 0.16 12.4 0.0 0.36 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF2339 PF10101.9 gi|389846388|ref|YP_006348627.1| - 0.0042 15.7 1.3 0.0061 15.2 1.3 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) DUF1129 PF06570.11 gi|389846388|ref|YP_006348627.1| - 0.017 14.6 0.9 0.027 13.9 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Phage_holin_3_3 PF16083.5 gi|389846388|ref|YP_006348627.1| - 1.1 9.5 3.3 0.41 10.8 0.1 1.9 2 0 0 2 2 2 0 LydA holin phage, holin superfamily III MCM PF00493.23 gi|389846389|ref|YP_006348628.1| - 1.1e-69 234.0 0.0 1.6e-69 233.5 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|389846389|ref|YP_006348628.1| - 3.1e-19 69.1 0.0 5e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|389846389|ref|YP_006348628.1| - 5.1e-14 52.5 0.0 1.2e-13 51.3 0.0 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|389846389|ref|YP_006348628.1| - 6.4e-14 51.8 0.1 1.6e-09 37.5 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|389846389|ref|YP_006348628.1| - 4.6e-09 36.4 0.0 2e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|389846389|ref|YP_006348628.1| - 6.1e-05 22.8 0.4 0.00015 21.6 0.4 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389846389|ref|YP_006348628.1| - 0.0005 20.5 1.9 0.0083 16.5 0.0 2.6 2 1 0 3 3 3 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|389846389|ref|YP_006348628.1| - 0.0075 16.0 0.1 0.026 14.2 0.1 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|389846389|ref|YP_006348628.1| - 0.026 14.8 0.0 0.11 12.7 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|389846389|ref|YP_006348628.1| - 0.049 13.5 0.0 0.22 11.4 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|389846389|ref|YP_006348628.1| - 0.11 12.9 0.1 0.26 11.7 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Resolvase PF00239.21 gi|389846391|ref|YP_006348630.1| - 4.4e-34 117.7 2.4 6.6e-34 117.1 2.4 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain DUF812 PF05667.11 gi|389846391|ref|YP_006348630.1| - 0.0021 17.0 0.7 0.0037 16.2 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF812) HTH_29 PF13551.6 gi|389846391|ref|YP_006348630.1| - 0.0027 17.7 0.3 0.045 13.8 0.3 2.3 1 1 1 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|389846391|ref|YP_006348630.1| - 0.0091 15.8 0.4 0.035 13.9 0.1 2.2 2 1 1 3 3 3 1 Homeodomain-like domain HTH_30 PF13556.6 gi|389846391|ref|YP_006348630.1| - 0.11 12.3 0.0 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_38 PF13936.6 gi|389846391|ref|YP_006348630.1| - 0.19 11.5 1.3 0.4 10.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Fic PF02661.18 gi|389846392|ref|YP_006348631.1| - 9.7e-05 23.2 0.1 0.00016 22.5 0.1 1.4 1 0 0 1 1 1 1 Fic/DOC family HTH_AsnC-type PF13404.6 gi|389846393|ref|YP_006348632.1| - 0.051 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389846393|ref|YP_006348632.1| - 0.18 11.4 0.0 0.39 10.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Dam PF05869.11 gi|389846394|ref|YP_006348633.1| - 3.2e-13 49.6 0.0 3.7e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) Met_10 PF02475.16 gi|389846397|ref|YP_006348636.1| - 1.7e-55 187.9 0.0 2.3e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|389846397|ref|YP_006348636.1| - 2.5e-13 49.7 0.0 6.1e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_15 PF09445.10 gi|389846397|ref|YP_006348636.1| - 2.6e-06 27.1 0.0 3.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|389846397|ref|YP_006348636.1| - 4.4e-06 26.3 0.0 9.7e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|389846397|ref|YP_006348636.1| - 8e-06 26.5 0.0 1.9e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|389846397|ref|YP_006348636.1| - 1.2e-05 24.9 0.0 1.9e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|389846397|ref|YP_006348636.1| - 0.0001 22.0 0.0 0.00032 20.4 0.0 1.8 1 1 1 2 2 2 1 Conserved hypothetical protein 95 TRM PF02005.16 gi|389846397|ref|YP_006348636.1| - 0.0003 20.1 0.0 0.00047 19.4 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.15 gi|389846397|ref|YP_006348636.1| - 0.0035 17.1 0.0 0.0051 16.5 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_11 PF08241.12 gi|389846397|ref|YP_006348636.1| - 0.0074 16.9 0.0 0.016 15.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846397|ref|YP_006348636.1| - 0.014 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|389846397|ref|YP_006348636.1| - 0.019 14.9 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|389846397|ref|YP_006348636.1| - 0.023 14.4 0.1 0.095 12.4 0.1 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DNA_methylase PF00145.17 gi|389846397|ref|YP_006348636.1| - 0.038 13.3 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltrans_SAM PF10672.9 gi|389846397|ref|YP_006348636.1| - 0.057 12.6 0.0 0.08 12.1 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase tRNA_U5-meth_tr PF05958.11 gi|389846397|ref|YP_006348636.1| - 0.21 10.6 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase HTH_10 PF04967.12 gi|389846398|ref|YP_006348637.1| - 4.7e-18 64.7 0.0 9e-18 63.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389846398|ref|YP_006348637.1| - 1.6e-10 41.1 1.0 2.7e-10 40.4 1.0 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|389846398|ref|YP_006348637.1| - 4.7e-05 23.2 0.1 0.00029 20.6 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|389846398|ref|YP_006348637.1| - 0.00058 19.4 0.1 0.0096 15.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|389846398|ref|YP_006348637.1| - 0.0019 17.7 0.0 0.0061 16.1 0.0 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|389846398|ref|YP_006348637.1| - 0.0072 16.1 0.1 0.064 13.1 0.1 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389846398|ref|YP_006348637.1| - 0.029 14.0 0.0 6.2 6.6 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|389846398|ref|YP_006348637.1| - 0.038 14.0 0.0 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AP_endonuc_2 PF01261.24 gi|389846398|ref|YP_006348637.1| - 0.086 12.3 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Phage_CI_repr PF07022.13 gi|389846398|ref|YP_006348637.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|389846398|ref|YP_006348637.1| - 0.2 11.8 0.0 0.45 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Usp PF00582.26 gi|389846400|ref|YP_006348639.1| - 1.6e-31 109.7 0.1 1.9e-31 109.5 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family SNARE_assoc PF09335.11 gi|389846401|ref|YP_006348640.1| - 2.8e-20 73.0 6.6 2.8e-20 73.0 6.6 2.4 2 1 1 3 3 3 1 SNARE associated Golgi protein AzlD PF05437.12 gi|389846401|ref|YP_006348640.1| - 2.6 8.3 15.7 1.6 8.9 7.6 3.2 2 1 1 3 3 3 0 Branched-chain amino acid transport protein (AzlD) E1-E2_ATPase PF00122.20 gi|389846402|ref|YP_006348641.1| - 4e-51 173.1 4.3 4e-51 173.1 4.3 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|389846402|ref|YP_006348641.1| - 1.8e-38 132.1 2.5 1.8e-38 132.1 2.5 2.1 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|389846402|ref|YP_006348641.1| - 1.2e-22 81.3 5.9 6.4e-22 78.9 5.9 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|389846402|ref|YP_006348641.1| - 1.6e-18 66.2 0.0 4.5e-18 64.7 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|389846402|ref|YP_006348641.1| - 2.2e-14 53.3 0.0 4.5e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|389846402|ref|YP_006348641.1| - 0.00037 20.3 0.4 0.15 11.8 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Pyridox_ox_2 PF12900.7 gi|389846403|ref|YP_006348642.1| - 1.6e-10 41.1 0.0 1.9e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Viral_protease PF08715.10 gi|389846403|ref|YP_006348642.1| - 0.14 11.4 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Papain like viral protease Usp PF00582.26 gi|389846404|ref|YP_006348643.1| - 7.8e-06 26.5 3.5 2.6e-05 24.8 3.5 1.8 1 1 0 1 1 1 1 Universal stress protein family NPCBM_assoc PF10633.9 gi|389846405|ref|YP_006348644.1| - 0.039 14.2 0.1 0.071 13.4 0.1 1.6 1 1 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase E1-E2_ATPase PF00122.20 gi|662859395|ref|YP_006348645.2| - 1e-44 152.2 4.2 1.3e-44 151.9 0.3 2.6 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|662859395|ref|YP_006348645.2| - 8.8e-32 111.1 7.8 8.8e-32 111.1 7.8 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|662859395|ref|YP_006348645.2| - 6.7e-10 39.3 0.0 3e-09 37.2 0.0 2.2 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|662859395|ref|YP_006348645.2| - 0.00027 20.8 0.3 0.00042 20.1 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|662859395|ref|YP_006348645.2| - 0.032 15.0 0.6 0.1 13.3 0.8 1.8 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase Peptidase_S24 PF00717.23 gi|662859395|ref|YP_006348645.2| - 0.069 13.1 0.6 0.92 9.5 0.1 2.8 3 0 0 3 3 3 0 Peptidase S24-like DsbD_2 PF13386.6 gi|389846407|ref|YP_006348646.1| - 5.5e-45 153.8 19.2 6.7e-45 153.5 19.2 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region CoxIIa PF08113.11 gi|662859396|ref|YP_006348648.2| - 0.11 12.4 4.0 0.15 11.9 4.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IIa family COX2 PF00116.20 gi|389846410|ref|YP_006348649.1| - 9e-10 38.5 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|389846410|ref|YP_006348649.1| - 0.00012 22.1 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.10 gi|389846410|ref|YP_006348649.1| - 0.00078 19.2 1.3 0.0015 18.3 1.3 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.20 gi|389846411|ref|YP_006348650.1| - 8.1e-89 298.4 60.0 8.1e-89 298.4 60.0 1.9 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF443 PF04276.12 gi|389846412|ref|YP_006348651.1| - 0.023 14.5 0.9 0.026 14.3 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF443) Usp PF00582.26 gi|389846413|ref|YP_006348652.1| - 3.9e-35 121.4 2.3 4.4e-35 121.2 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF3798 PF12683.7 gi|389846413|ref|YP_006348652.1| - 0.14 11.5 0.4 0.47 9.8 0.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3798) Aldolase PF01081.19 gi|389846414|ref|YP_006348653.1| - 2.7e-43 147.7 1.5 3.3e-43 147.4 1.5 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|389846414|ref|YP_006348653.1| - 0.001 18.4 6.9 0.52 9.5 0.5 3.0 2 1 1 3 3 3 3 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|389846414|ref|YP_006348653.1| - 0.043 13.2 0.9 0.88 8.9 0.9 2.9 1 1 0 1 1 1 0 Thiamine monophosphate synthase Pro_CA PF00484.19 gi|389846415|ref|YP_006348654.1| - 1.3e-24 87.3 0.1 1.6e-24 87.0 0.1 1.1 1 0 0 1 1 1 1 Carbonic anhydrase TetR_C_14 PF17754.1 gi|389846415|ref|YP_006348654.1| - 0.11 12.5 0.1 0.39 10.7 0.1 2.0 2 0 0 2 2 2 0 MftR C-terminal domain bPH_2 PF03703.14 gi|389846416|ref|YP_006348655.1| - 4.6e-44 148.5 4.5 1e-19 70.5 0.3 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|389846416|ref|YP_006348655.1| - 0.00013 22.0 0.0 0.19 11.8 0.0 2.7 3 0 0 3 3 3 2 Bacterial PH domain DUF3561 PF12084.8 gi|389846416|ref|YP_006348655.1| - 0.04 13.9 0.6 0.12 12.4 0.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) YwiC PF14256.6 gi|389846416|ref|YP_006348655.1| - 0.045 14.1 0.3 0.045 14.1 0.3 2.7 3 0 0 3 3 3 0 YwiC-like protein bPH_5 PF10882.8 gi|389846416|ref|YP_006348655.1| - 0.056 13.5 0.0 0.25 11.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial PH domain PrgI PF12666.7 gi|389846416|ref|YP_006348655.1| - 4.3 8.1 8.9 3.2 8.5 0.4 3.2 3 0 0 3 3 3 0 PrgI family protein MAGE_N PF12440.8 gi|389846416|ref|YP_006348655.1| - 8.9 7.1 8.7 0.68 10.6 2.7 2.2 2 0 0 2 2 2 0 Melanoma associated antigen family N terminal bPH_2 PF03703.14 gi|389846417|ref|YP_006348656.1| - 3.3e-17 62.5 0.0 4.8e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain Phage_holin_3_6 PF07332.11 gi|389846417|ref|YP_006348656.1| - 0.029 14.4 4.0 0.045 13.8 4.0 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1453 PF07301.11 gi|389846417|ref|YP_006348656.1| - 0.058 13.4 0.1 0.081 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) Mito_morph_reg PF14972.6 gi|389846417|ref|YP_006348656.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial morphogenesis regulator TMF_TATA_bd PF12325.8 gi|662859397|ref|YP_006348657.2| - 0.059 13.6 0.3 15 5.9 0.0 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Protoglobin PF11563.8 gi|662859397|ref|YP_006348657.2| - 0.14 12.1 0.1 6.2 6.7 0.2 2.2 1 1 1 2 2 2 0 Protoglobin YkyA PF10368.9 gi|662859397|ref|YP_006348657.2| - 0.15 11.7 0.4 1.3 8.7 0.4 2.2 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Metallophos PF00149.28 gi|389846419|ref|YP_006348658.1| - 9e-16 59.0 4.3 1.1e-15 58.7 4.3 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|389846419|ref|YP_006348658.1| - 4.7e-07 30.1 0.1 2.4e-06 27.9 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|389846419|ref|YP_006348658.1| - 0.078 12.3 0.0 0.39 10.0 0.1 2.1 2 1 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily CopD PF05425.13 gi|662859398|ref|YP_006348659.2| - 0.014 15.8 5.9 0.014 15.8 5.9 1.9 1 1 1 2 2 2 0 Copper resistance protein D Peptidase_S9 PF00326.21 gi|389846421|ref|YP_006348660.1| - 1.2e-49 168.7 0.1 1.7e-49 168.2 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|389846421|ref|YP_006348660.1| - 4.4e-18 64.7 7.1 1.4e-05 24.9 0.1 5.7 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|389846421|ref|YP_006348660.1| - 1e-10 41.6 0.0 1.8e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family DPPIV_N PF00930.21 gi|389846421|ref|YP_006348660.1| - 1.6e-08 33.7 0.1 0.0072 15.1 0.0 4.0 2 2 3 5 5 5 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Hydrolase_4 PF12146.8 gi|389846421|ref|YP_006348660.1| - 6.9e-06 25.5 0.1 0.00018 20.8 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 SGL PF08450.12 gi|389846421|ref|YP_006348660.1| - 7.8e-05 22.4 0.2 0.13 11.8 0.0 3.5 2 1 1 3 3 3 1 SMP-30/Gluconolactonase/LRE-like region Abhydrolase_1 PF00561.20 gi|389846421|ref|YP_006348660.1| - 0.0014 18.3 0.7 1.1 8.8 0.0 2.4 2 0 0 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 gi|389846421|ref|YP_006348660.1| - 0.026 14.2 0.1 0.062 13.0 0.0 1.6 2 0 0 2 2 2 0 Serine hydrolase (FSH1) WD40 PF00400.32 gi|389846421|ref|YP_006348660.1| - 0.059 14.3 1.7 3.2 8.8 0.1 4.3 4 0 0 4 4 4 0 WD domain, G-beta repeat ANAPC4_WD40 PF12894.7 gi|389846421|ref|YP_006348660.1| - 0.11 12.9 0.0 7.7 6.9 0.0 3.6 4 0 0 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain Esterase_phd PF10503.9 gi|389846421|ref|YP_006348660.1| - 0.15 11.5 0.0 0.31 10.5 0.0 1.5 1 1 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_3 PF07859.13 gi|389846421|ref|YP_006348660.1| - 0.26 11.1 0.7 2.7 7.8 0.7 2.3 1 1 0 1 1 1 0 alpha/beta hydrolase fold DUF2071 PF09844.9 gi|389846422|ref|YP_006348661.1| - 1.8e-70 236.9 0.1 2e-70 236.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|389846422|ref|YP_006348661.1| - 0.0003 20.4 0.0 0.00039 20.0 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Aldo_ket_red PF00248.21 gi|389846423|ref|YP_006348662.1| - 2.8e-63 213.9 0.0 5.4e-62 209.6 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family Macro PF01661.21 gi|389846424|ref|YP_006348663.1| - 2.5e-27 95.2 0.0 3.2e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Macro domain DUF1861 PF08950.10 gi|389846424|ref|YP_006348663.1| - 0.15 11.3 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) Oxidored_FMN PF00724.20 gi|389846425|ref|YP_006348664.1| - 2.4e-31 109.3 0.0 3.1e-29 102.3 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|389846425|ref|YP_006348664.1| - 0.046 12.8 0.0 0.18 10.8 0.0 1.9 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|389846425|ref|YP_006348664.1| - 0.14 11.6 0.0 0.36 10.3 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein NMO PF03060.15 gi|389846425|ref|YP_006348664.1| - 0.15 11.4 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase HTH_20 PF12840.7 gi|389846426|ref|YP_006348665.1| - 1.9e-09 37.4 0.3 2.7e-09 37.0 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389846426|ref|YP_006348665.1| - 6.2e-05 22.7 0.1 0.00012 21.8 0.1 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389846426|ref|YP_006348665.1| - 0.0041 17.0 0.0 0.0075 16.1 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389846426|ref|YP_006348665.1| - 0.0053 16.6 0.1 0.0076 16.1 0.1 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|389846426|ref|YP_006348665.1| - 0.019 14.5 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|389846426|ref|YP_006348665.1| - 0.047 13.8 0.0 0.46 10.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase FUR PF01475.19 gi|389846426|ref|YP_006348665.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family CPP1-like PF11833.8 gi|389846427|ref|YP_006348666.1| - 1.3 8.6 3.5 1.5 8.5 3.5 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Thioredoxin PF00085.20 gi|389846428|ref|YP_006348667.1| - 2.3e-27 95.0 0.0 3e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|389846428|ref|YP_006348667.1| - 9.7e-10 38.9 0.1 4e-08 33.7 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|389846428|ref|YP_006348667.1| - 1.6e-06 28.3 0.0 0.0029 17.9 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like DSBA PF01323.20 gi|389846428|ref|YP_006348667.1| - 3.1e-06 27.1 0.5 6.1e-06 26.2 0.1 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.6 gi|389846428|ref|YP_006348667.1| - 1.7e-05 24.9 0.0 2.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|389846428|ref|YP_006348667.1| - 3e-05 24.0 0.0 4.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|389846428|ref|YP_006348667.1| - 5e-05 23.1 0.0 7.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|389846428|ref|YP_006348667.1| - 0.00029 21.2 0.0 0.00048 20.5 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) HyaE PF07449.11 gi|389846428|ref|YP_006348667.1| - 0.00037 20.4 0.0 0.00054 19.9 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.6 gi|389846428|ref|YP_006348667.1| - 0.00061 19.8 0.1 0.0011 19.0 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin domain OST3_OST6 PF04756.13 gi|389846428|ref|YP_006348667.1| - 0.0015 17.9 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_5 PF13743.6 gi|389846428|ref|YP_006348667.1| - 0.0033 17.1 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|389846428|ref|YP_006348667.1| - 0.0075 16.2 0.1 0.027 14.4 0.1 1.8 1 1 1 2 2 2 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|389846428|ref|YP_006348667.1| - 0.013 15.7 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin Glycos_transf_3 PF00591.21 gi|389846429|ref|YP_006348668.1| - 8.8e-12 45.2 1.1 2.3e-11 43.8 1.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|389846429|ref|YP_006348668.1| - 4.8e-10 39.0 0.0 1.3e-09 37.6 0.0 1.8 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|389846429|ref|YP_006348668.1| - 2.2e-09 37.0 0.0 5.6e-09 35.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.9 gi|389846429|ref|YP_006348668.1| - 0.054 12.3 0.1 0.1 11.4 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Molydop_binding PF01568.21 gi|389846429|ref|YP_006348668.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain IF-2B PF01008.17 gi|389846430|ref|YP_006348669.1| - 2.3e-76 256.7 0.2 2.6e-76 256.5 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HTH_10 PF04967.12 gi|389846431|ref|YP_006348670.1| - 9.9e-14 50.9 0.0 1.6e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389846431|ref|YP_006348670.1| - 7.9e-05 22.3 0.2 0.0011 18.6 0.2 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389846431|ref|YP_006348670.1| - 0.0075 15.8 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|389846431|ref|YP_006348670.1| - 0.019 14.3 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Complex1_49kDa PF00346.19 gi|389846432|ref|YP_006348671.1| - 1.6e-84 283.2 0.0 4.5e-83 278.5 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|389846432|ref|YP_006348671.1| - 1.9e-35 122.1 0.2 3.9e-35 121.1 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.15 gi|389846432|ref|YP_006348671.1| - 0.11 12.0 0.1 0.23 10.9 0.1 1.6 1 0 0 1 1 1 0 Autoinducer binding domain RuBisCO_large PF00016.20 gi|389846433|ref|YP_006348672.1| - 2.5e-91 306.0 0.2 6e-91 304.7 0.2 1.6 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|389846433|ref|YP_006348672.1| - 1.4e-37 128.5 0.0 2.9e-37 127.5 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Na_Ca_ex PF01699.24 gi|389846434|ref|YP_006348673.1| - 4.7e-37 127.3 31.5 2.7e-23 82.6 14.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DEAD PF00270.29 gi|389846435|ref|YP_006348674.1| - 2.2e-19 69.9 0.0 7.6e-19 68.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|389846435|ref|YP_006348674.1| - 1.6e-07 31.7 0.0 6.8e-07 29.6 0.0 2.1 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|389846435|ref|YP_006348674.1| - 7.3e-05 22.8 0.0 0.00012 22.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TAT_signal PF10518.9 gi|389846436|ref|YP_006348675.1| - 0.2 11.6 0.6 0.55 10.2 0.6 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aminotran_1_2 PF00155.21 gi|389846437|ref|YP_006348676.1| - 1.6e-65 221.7 0.0 1.8e-65 221.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|389846437|ref|YP_006348676.1| - 2.3e-05 23.1 0.0 3.5e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389846437|ref|YP_006348676.1| - 0.00056 19.3 0.3 0.0043 16.4 0.1 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|389846437|ref|YP_006348676.1| - 0.00085 18.7 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|389846437|ref|YP_006348676.1| - 0.0053 15.8 0.0 0.0089 15.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|389846437|ref|YP_006348676.1| - 0.17 10.5 0.0 0.27 9.9 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III DMRL_synthase PF00885.19 gi|389846438|ref|YP_006348677.1| - 5.6e-34 117.0 1.2 6e-34 116.9 1.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PMT_2 PF13231.6 gi|389846439|ref|YP_006348678.1| - 1.3e-11 44.9 5.4 1.3e-11 44.9 5.4 2.9 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TraG_N PF07916.11 gi|389846439|ref|YP_006348678.1| - 0.041 12.7 1.5 0.099 11.5 1.5 1.7 1 1 0 1 1 1 0 TraG-like protein, N-terminal region DUF668 PF05003.12 gi|389846439|ref|YP_006348678.1| - 0.057 13.9 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF668) ATP-grasp PF02222.22 gi|662859399|ref|YP_006348679.2| - 7.4e-51 172.1 0.0 9.8e-51 171.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|662859399|ref|YP_006348679.2| - 5.4e-18 64.4 0.0 1e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain 2-Hacid_dh_C PF02826.19 gi|662859399|ref|YP_006348679.2| - 0.00018 20.9 0.0 0.00036 19.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.13 gi|662859399|ref|YP_006348679.2| - 0.0026 17.3 0.0 0.0075 15.8 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.6 gi|662859399|ref|YP_006348679.2| - 0.087 13.3 0.1 0.26 11.8 0.1 1.9 1 1 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|662859399|ref|YP_006348679.2| - 0.098 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRC PF00731.20 gi|389846441|ref|YP_006348680.1| - 1.2e-49 167.6 0.1 1.5e-49 167.4 0.1 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.19 gi|389846442|ref|YP_006348681.1| - 1.7e-32 111.5 0.6 2e-32 111.2 0.6 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GAPT PF11770.8 gi|389846442|ref|YP_006348681.1| - 0.033 14.1 0.1 0.058 13.3 0.1 1.4 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) Oxidored_q6 PF01058.22 gi|389846443|ref|YP_006348682.1| - 1e-21 77.1 0.2 1.5e-21 76.6 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|389846444|ref|YP_006348683.1| - 8e-83 277.7 0.1 2.4e-81 272.8 0.1 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|389846444|ref|YP_006348683.1| - 7.1e-34 117.1 0.2 1.3e-33 116.2 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|389846445|ref|YP_006348684.1| - 3.6e-93 312.2 19.4 4.1e-93 311.9 19.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.7 gi|389846446|ref|YP_006348685.1| - 1.9e-12 47.5 10.0 3.1e-12 46.9 10.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389846446|ref|YP_006348685.1| - 2e-12 46.3 9.6 1.4e-06 27.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|389846446|ref|YP_006348685.1| - 1.1e-10 42.3 4.1 8.2e-06 26.7 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|389846446|ref|YP_006348685.1| - 1.3e-09 38.1 8.6 1.8e-09 37.6 8.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389846446|ref|YP_006348685.1| - 6.5e-09 35.8 22.5 2.3e-07 30.8 11.5 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389846446|ref|YP_006348685.1| - 1.6e-07 31.3 19.8 3.9e-06 26.9 11.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|389846446|ref|YP_006348685.1| - 9.8e-06 25.9 9.6 0.00028 21.3 11.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|389846446|ref|YP_006348685.1| - 1.7e-05 25.3 12.5 0.0071 16.9 1.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|389846446|ref|YP_006348685.1| - 1.7e-05 24.7 13.7 0.0059 16.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|389846446|ref|YP_006348685.1| - 4.6e-05 23.3 12.0 0.0022 18.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|389846446|ref|YP_006348685.1| - 0.00021 21.5 13.8 0.0042 17.5 4.1 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|389846446|ref|YP_006348685.1| - 0.00023 21.9 14.6 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389846446|ref|YP_006348685.1| - 0.0025 18.0 9.8 0.093 12.9 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|389846446|ref|YP_006348685.1| - 0.06 13.5 8.1 0.24 11.6 8.2 1.8 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|389846446|ref|YP_006348685.1| - 0.18 12.4 12.5 0.69 10.5 1.8 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TNFR_c6 PF00020.18 gi|389846446|ref|YP_006348685.1| - 0.42 11.1 7.5 6.5 7.3 1.5 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_22 PF17179.4 gi|389846446|ref|YP_006348685.1| - 0.44 11.4 10.4 1.2 10.1 1.6 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain zf_PR_Knuckle PF18445.1 gi|389846446|ref|YP_006348685.1| - 4.1 7.3 6.7 23 4.9 1.3 2.6 2 0 0 2 2 2 0 PR zinc knuckle motif Oxidored_q3 PF00499.20 gi|389846447|ref|YP_006348686.1| - 3.6e-18 65.7 6.5 3.6e-18 65.7 6.5 1.3 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|389846447|ref|YP_006348686.1| - 0.26 11.5 13.4 0.14 12.3 11.5 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF3043 PF11241.8 gi|389846447|ref|YP_006348686.1| - 2 8.4 3.1 2.6 8.1 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) Oxidored_q3 PF00499.20 gi|389846448|ref|YP_006348687.1| - 0.00025 20.8 2.3 0.00028 20.6 2.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.24 gi|389846449|ref|YP_006348688.1| - 3.8e-23 81.1 6.6 4e-23 81.0 6.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|389846450|ref|YP_006348689.1| - 1.8e-77 260.4 20.9 4e-77 259.3 20.9 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|389846450|ref|YP_006348689.1| - 9.5e-19 67.2 2.4 2.1e-18 66.1 0.2 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|389846451|ref|YP_006348690.1| - 1.3e-73 247.8 27.5 1.3e-73 247.8 27.5 1.8 2 1 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|389846451|ref|YP_006348690.1| - 0.0038 17.3 3.2 0.0038 17.3 3.2 3.8 3 1 0 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|389846452|ref|YP_006348691.1| - 5.9e-67 225.9 23.8 1e-66 225.1 23.8 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|389846452|ref|YP_006348691.1| - 0.012 15.7 2.3 0.012 15.7 2.3 2.5 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tudor_4 PF18358.1 gi|389846452|ref|YP_006348691.1| - 0.14 11.8 0.3 0.32 10.6 0.3 1.6 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain DUF624 PF04854.14 gi|389846452|ref|YP_006348691.1| - 1.7 8.8 9.0 0.26 11.4 0.6 3.7 3 0 0 3 3 3 0 Protein of unknown function, DUF624 DHH PF01368.20 gi|389846454|ref|YP_006348693.1| - 3e-13 49.8 0.0 6.6e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|389846454|ref|YP_006348693.1| - 3.1e-13 50.3 0.2 1.2e-12 48.5 0.1 1.9 2 0 0 2 2 2 1 DHHA1 domain TrkA_N PF02254.18 gi|389846454|ref|YP_006348693.1| - 2.6e-09 37.4 0.1 1e-08 35.5 0.1 2.1 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|389846454|ref|YP_006348693.1| - 0.00075 19.2 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|389846454|ref|YP_006348693.1| - 0.066 13.7 0.0 0.19 12.1 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding CBS PF00571.28 gi|389846455|ref|YP_006348694.1| - 8.8e-25 86.9 1.8 1.5e-11 44.6 0.5 2.9 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|389846455|ref|YP_006348694.1| - 1.2e-10 41.6 0.2 9.9e-10 38.6 0.2 2.2 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|389846455|ref|YP_006348694.1| - 0.0023 18.1 0.0 0.017 15.2 0.0 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease MFS_1 PF07690.16 gi|662859400|ref|YP_006348697.2| - 1.1e-53 182.4 53.2 9.2e-49 166.2 35.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|662859400|ref|YP_006348697.2| - 8.2e-09 34.8 12.3 1.7e-07 30.5 12.3 2.2 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|662859400|ref|YP_006348697.2| - 2.4e-08 33.0 15.6 5.8e-08 31.7 0.4 2.1 1 1 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|662859400|ref|YP_006348697.2| - 3.2e-05 23.0 8.3 3.2e-05 23.0 8.3 2.9 2 1 0 2 2 2 1 MFS_1 like family MFS_3 PF05977.13 gi|662859400|ref|YP_006348697.2| - 0.035 12.5 19.0 0.013 14.0 1.5 2.4 3 0 0 3 3 3 0 Transmembrane secretion effector TRI12 PF06609.13 gi|662859400|ref|YP_006348697.2| - 0.094 11.1 5.0 0.16 10.4 1.9 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|662859400|ref|YP_006348697.2| - 2.4 6.3 6.4 1.5 7.0 1.9 2.5 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Chloroa_b-bind PF00504.21 gi|389846459|ref|YP_006348698.1| - 1 9.9 0.0 1 9.9 0.0 2.3 2 1 0 2 2 2 0 Chlorophyll A-B binding protein Peptidase_S8 PF00082.22 gi|389846460|ref|YP_006348699.1| - 1.7e-38 132.6 7.7 3.2e-38 131.7 7.7 1.5 1 1 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|389846460|ref|YP_006348699.1| - 0.0073 16.1 0.1 0.0073 16.1 0.1 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF21 PF01595.20 gi|662859401|ref|YP_006348700.2| - 2.3e-30 105.6 0.0 3.5e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|662859401|ref|YP_006348700.2| - 7.7e-08 32.7 0.9 0.00036 20.9 0.1 2.5 2 0 0 2 2 2 2 CBS domain DUF2165 PF09933.9 gi|662859401|ref|YP_006348700.2| - 0.067 13.2 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Predicted small integral membrane protein (DUF2165) Peptidase_M24 PF00557.24 gi|389846462|ref|YP_006348701.1| - 2e-61 207.3 0.4 2.5e-61 207.0 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|389846462|ref|YP_006348701.1| - 2.1e-28 99.6 0.2 5e-28 98.4 0.1 1.7 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain AAA_26 PF13500.6 gi|389846463|ref|YP_006348702.1| - 2.4e-37 128.7 0.0 3.9e-37 128.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|389846463|ref|YP_006348702.1| - 2.9e-25 88.1 0.5 3.6e-24 84.6 0.0 2.6 3 0 0 3 3 3 1 DRTGG domain CbiA PF01656.23 gi|389846463|ref|YP_006348702.1| - 3e-09 37.0 0.1 5.8e-09 36.1 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PucR PF07905.11 gi|389846463|ref|YP_006348702.1| - 0.0032 17.7 0.2 0.067 13.5 0.1 2.3 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family Hpr_kinase_N PF02603.16 gi|389846463|ref|YP_006348702.1| - 0.06 13.4 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 HPr Serine kinase N terminus Peripla_BP_4 PF13407.6 gi|389846463|ref|YP_006348702.1| - 0.07 12.7 0.2 0.92 9.0 0.1 2.6 1 1 2 3 3 3 0 Periplasmic binding protein domain DUF1611 PF07755.11 gi|389846463|ref|YP_006348702.1| - 0.13 11.5 2.3 4.1 6.6 0.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain ATP-grasp_5 PF13549.6 gi|389846464|ref|YP_006348703.1| - 6.3e-75 251.4 0.6 1.1e-74 250.7 0.6 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|389846464|ref|YP_006348703.1| - 1.8e-51 173.5 2.3 8.7e-51 171.3 0.3 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|389846464|ref|YP_006348703.1| - 2.5e-24 86.0 0.5 1.4e-22 80.4 0.1 2.9 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|389846464|ref|YP_006348703.1| - 2.9e-11 43.9 0.9 1.1e-10 42.1 0.9 2.1 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|389846464|ref|YP_006348703.1| - 1.7e-05 24.5 0.1 3.2e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Zip PF02535.22 gi|389846465|ref|YP_006348704.1| - 1.1e-12 47.9 21.4 1.1e-12 47.9 5.8 3.0 1 1 1 2 2 2 2 ZIP Zinc transporter CDKN3 PF05706.12 gi|389846466|ref|YP_006348705.1| - 0.091 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) ABC2_membrane PF01061.24 gi|389846467|ref|YP_006348706.1| - 2.5e-21 76.1 11.5 4e-21 75.4 11.5 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|389846467|ref|YP_006348706.1| - 1.6e-14 53.8 8.0 1.6e-14 53.8 8.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389846467|ref|YP_006348706.1| - 0.00025 21.0 3.2 0.00025 21.0 3.2 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389846468|ref|YP_006348707.1| - 1.9e-29 102.9 0.0 3.4e-29 102.1 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|389846468|ref|YP_006348707.1| - 3.1e-16 60.0 0.3 2.2e-09 37.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|389846468|ref|YP_006348707.1| - 8.5e-05 22.4 0.0 0.38 10.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|389846468|ref|YP_006348707.1| - 0.00013 21.7 0.2 0.0055 16.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|389846468|ref|YP_006348707.1| - 0.00014 22.5 0.2 0.0002 21.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389846468|ref|YP_006348707.1| - 0.00065 19.2 0.0 0.45 9.9 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389846468|ref|YP_006348707.1| - 0.0048 16.6 0.4 0.0094 15.7 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|389846468|ref|YP_006348707.1| - 0.01 15.5 0.0 0.74 9.5 0.1 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.29 gi|389846468|ref|YP_006348707.1| - 0.017 15.5 0.4 0.064 13.7 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|389846468|ref|YP_006348707.1| - 0.018 14.9 0.2 0.04 13.8 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_24 PF13479.6 gi|389846468|ref|YP_006348707.1| - 0.02 14.6 0.2 0.45 10.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|389846468|ref|YP_006348707.1| - 0.024 14.6 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|389846468|ref|YP_006348707.1| - 0.025 14.2 0.0 0.05 13.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|389846468|ref|YP_006348707.1| - 0.027 14.5 0.2 0.11 12.6 0.2 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|389846468|ref|YP_006348707.1| - 0.056 13.6 0.3 0.072 13.2 0.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|389846468|ref|YP_006348707.1| - 0.09 13.1 0.1 0.14 12.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389846468|ref|YP_006348707.1| - 0.1 13.0 0.3 0.17 12.3 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|389846468|ref|YP_006348707.1| - 0.12 11.8 0.0 0.25 10.7 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|389846468|ref|YP_006348707.1| - 0.13 12.5 1.1 0.32 11.2 1.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|389846468|ref|YP_006348707.1| - 0.16 11.6 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain GSDH PF07995.11 gi|389846469|ref|YP_006348708.1| - 1.4e-31 110.1 0.0 2.2e-31 109.4 0.0 1.3 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Reg_prop PF07494.11 gi|389846469|ref|YP_006348708.1| - 0.0027 17.7 0.0 9.4 6.9 0.0 4.0 3 0 0 3 3 3 1 Two component regulator propeller TAT_signal PF10518.9 gi|389846469|ref|YP_006348708.1| - 0.097 12.5 5.5 0.24 11.3 5.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.22 gi|389846470|ref|YP_006348709.1| - 6.8e-22 78.5 0.0 1.7e-21 77.2 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|389846470|ref|YP_006348709.1| - 5.7e-07 29.6 0.0 1.2e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DUF3742 PF12553.8 gi|389846471|ref|YP_006348710.1| - 0.19 11.8 0.0 0.22 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) SseC PF04888.12 gi|389846471|ref|YP_006348710.1| - 3.6 7.1 5.2 4.1 6.9 5.2 1.0 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Aldo_ket_red PF00248.21 gi|389846472|ref|YP_006348711.1| - 3.2e-67 226.8 0.0 3.9e-67 226.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|389846472|ref|YP_006348711.1| - 0.24 9.9 0.0 0.35 9.4 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase YdjM PF04307.14 gi|389846473|ref|YP_006348712.1| - 3.3e-07 29.8 3.6 5.1e-07 29.1 3.6 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4407 PF14362.6 gi|389846473|ref|YP_006348712.1| - 0.079 12.3 1.0 0.11 11.8 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CytB6-F_Fe-S PF08802.10 gi|389846473|ref|YP_006348712.1| - 1.2 9.2 0.1 1.2 9.2 0.1 2.9 2 2 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Rdx PF10262.9 gi|389846474|ref|YP_006348713.1| - 3.1e-17 62.5 0.0 3.4e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 Rdx family CesT PF05932.13 gi|389846474|ref|YP_006348713.1| - 0.021 14.9 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Tir chaperone protein (CesT) family UbiA PF01040.18 gi|389846476|ref|YP_006348715.1| - 1.7e-52 178.2 25.6 1.7e-52 178.2 25.6 2.7 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|389846476|ref|YP_006348715.1| - 1.1e-08 34.5 17.8 1.4e-07 30.9 7.8 4.5 3 2 2 5 5 5 2 Cytochrome oxidase assembly protein COX2 PF00116.20 gi|389846477|ref|YP_006348716.1| - 1.6e-20 73.2 1.3 1.4e-19 70.1 0.0 2.2 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|389846477|ref|YP_006348716.1| - 5.8e-13 48.8 1.3 1.1e-12 47.9 1.3 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|389846477|ref|YP_006348716.1| - 0.0003 20.9 0.6 0.00095 19.3 0.0 2.2 2 1 1 3 3 3 1 Cupredoxin-like domain TrbC PF04956.13 gi|389846477|ref|YP_006348716.1| - 0.067 13.4 7.8 0.34 11.1 8.1 1.9 1 1 0 1 1 1 0 TrbC/VIRB2 family Claudin_3 PF06653.11 gi|389846477|ref|YP_006348716.1| - 0.079 12.9 0.7 0.13 12.2 0.2 1.5 1 1 0 1 1 1 0 Tight junction protein, Claudin-like DUF3671 PF12420.8 gi|389846477|ref|YP_006348716.1| - 0.69 10.0 2.3 0.96 9.5 0.9 1.9 1 1 1 2 2 2 0 Protein of unknown function SepZ PF06066.11 gi|389846478|ref|YP_006348717.1| - 0.0098 16.1 0.4 0.015 15.5 0.4 1.4 1 1 0 1 1 1 1 SepZ Adeno_VII PF03228.14 gi|389846478|ref|YP_006348717.1| - 0.019 15.6 0.2 0.022 15.4 0.2 1.1 1 0 0 1 1 1 0 Adenoviral core protein VII CTP_transf_like PF01467.26 gi|389846479|ref|YP_006348718.1| - 8.9e-17 61.6 0.0 1e-16 61.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|389846479|ref|YP_006348718.1| - 0.16 11.9 2.1 0.44 10.4 0.4 2.3 1 1 2 3 3 3 0 FAD synthetase Prok-JAB PF14464.6 gi|389846480|ref|YP_006348719.1| - 1.8e-08 34.2 0.0 2.7e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|389846480|ref|YP_006348719.1| - 0.02 14.9 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain JAB PF01398.21 gi|389846480|ref|YP_006348719.1| - 0.1 12.6 0.0 0.65 10.0 0.0 2.0 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Fructosamin_kin PF03881.14 gi|389846481|ref|YP_006348720.1| - 3.4e-50 170.9 0.0 4.2e-50 170.6 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|389846481|ref|YP_006348720.1| - 1.6e-17 64.2 3.5 2.1e-17 63.8 3.5 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|389846481|ref|YP_006348720.1| - 0.001 18.7 0.0 0.081 12.5 0.0 2.1 2 0 0 2 2 2 2 RIO1 family HTH_IclR PF09339.10 gi|389846481|ref|YP_006348720.1| - 0.093 12.5 0.0 2.7 7.8 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain tRNA_anti-codon PF01336.25 gi|662859402|ref|YP_006348721.2| - 1.1e-07 31.7 0.2 2.4e-07 30.6 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|662859402|ref|YP_006348721.2| - 1.5e-05 25.2 0.2 1.5e-05 25.2 0.2 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|662859402|ref|YP_006348721.2| - 0.0041 17.3 0.5 0.0092 16.2 0.5 1.6 1 0 0 1 1 1 1 DHH family PLDc_2 PF13091.6 gi|389846483|ref|YP_006348722.1| - 8.1e-40 135.8 0.0 1.2e-21 77.0 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|389846483|ref|YP_006348722.1| - 3.1e-07 30.3 1.7 0.00026 21.0 0.5 2.7 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|389846483|ref|YP_006348722.1| - 0.00038 19.7 1.3 0.03 13.5 0.0 3.4 4 1 0 4 4 4 1 Archaeal transcriptional regulator TrmB LTD PF00932.19 gi|389846483|ref|YP_006348722.1| - 0.0041 17.5 0.2 0.017 15.4 0.0 2.2 2 1 0 2 2 2 1 Lamin Tail Domain DUF732 PF05305.14 gi|389846483|ref|YP_006348722.1| - 0.097 13.1 1.4 0.56 10.6 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF732) HEAT_2 PF13646.6 gi|389846484|ref|YP_006348723.1| - 3.1e-21 75.6 6.7 6.4e-12 45.7 6.1 3.0 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|389846484|ref|YP_006348723.1| - 2e-14 52.7 11.5 9.5e-06 25.8 0.7 6.9 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|389846484|ref|YP_006348723.1| - 3.6e-07 29.9 0.3 0.63 10.5 0.1 3.8 3 0 0 3 3 3 2 HEAT repeat HEAT_EZ PF13513.6 gi|389846484|ref|YP_006348723.1| - 6.6e-06 26.5 2.0 0.017 15.6 0.2 3.2 2 1 0 2 2 2 2 HEAT-like repeat Arm PF00514.23 gi|389846484|ref|YP_006348723.1| - 0.00023 21.1 0.2 0.59 10.3 0.1 3.4 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DUF2730 PF10805.8 gi|389846484|ref|YP_006348723.1| - 0.13 12.3 0.2 0.32 11.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) CCDC-167 PF15188.6 gi|389846484|ref|YP_006348723.1| - 2 8.8 4.9 7.1 7.1 4.5 2.2 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 DUF1690 PF07956.11 gi|389846484|ref|YP_006348723.1| - 2.9 8.3 6.0 2 8.9 3.7 1.9 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) TraF_2 PF13729.6 gi|389846484|ref|YP_006348723.1| - 4.4 6.6 12.7 2.8 7.2 2.6 2.7 2 0 0 2 2 2 0 F plasmid transfer operon, TraF, protein CN_hydrolase PF00795.22 gi|389846485|ref|YP_006348724.1| - 8.9e-33 113.7 0.0 9.8e-33 113.6 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PQQ_2 PF13360.6 gi|389846485|ref|YP_006348724.1| - 0.036 13.7 1.9 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 PQQ-like domain Oxidored_FMN PF00724.20 gi|389846486|ref|YP_006348725.1| - 4.9e-66 223.3 0.0 5.7e-66 223.1 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|389846486|ref|YP_006348725.1| - 0.014 14.9 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein Dus PF01207.17 gi|389846486|ref|YP_006348725.1| - 0.18 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) ABC_tran_CTD PF16326.5 gi|389846487|ref|YP_006348726.1| - 0.036 14.3 2.3 6.8 7.0 0.3 3.1 3 1 0 3 3 3 0 ABC transporter C-terminal domain Exonuc_VII_L PF02601.15 gi|389846487|ref|YP_006348726.1| - 0.074 12.6 0.9 0.1 12.2 0.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Ndc1_Nup PF09531.10 gi|389846487|ref|YP_006348726.1| - 0.16 10.6 0.1 0.25 10.0 0.1 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Golgin_A5 PF09787.9 gi|389846487|ref|YP_006348726.1| - 0.35 10.3 5.2 0.5 9.8 5.2 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 SLX9 PF15341.6 gi|389846487|ref|YP_006348726.1| - 1.3 9.5 6.9 5.6 7.4 0.2 2.4 2 0 0 2 2 2 0 Ribosome biogenesis protein SLX9 OB_aCoA_assoc PF01796.17 gi|389846488|ref|YP_006348727.1| - 1.8e-08 34.2 1.0 2.8e-08 33.6 1.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|389846489|ref|YP_006348728.1| - 4.6e-55 186.8 0.0 6.2e-55 186.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389846489|ref|YP_006348728.1| - 3.1e-08 33.3 0.0 6.4e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|389846489|ref|YP_006348728.1| - 0.00051 20.0 0.1 3.2 7.8 0.0 3.4 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|389846489|ref|YP_006348728.1| - 0.25 10.9 4.4 0.8 9.2 1.7 2.3 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain MttA_Hcf106 PF02416.16 gi|389846491|ref|YP_006348730.1| - 1.9e-14 52.7 3.0 2.6e-14 52.3 3.0 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|389846491|ref|YP_006348730.1| - 0.0031 18.5 0.1 0.0036 18.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4834) Dehydrin PF00257.19 gi|389846491|ref|YP_006348730.1| - 0.027 15.0 6.0 0.031 14.8 6.0 1.1 1 0 0 1 1 1 0 Dehydrin TRAP_alpha PF03896.16 gi|389846491|ref|YP_006348730.1| - 0.061 12.5 0.7 0.069 12.3 0.7 1.0 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Phage_Gp23 PF10669.9 gi|389846491|ref|YP_006348730.1| - 0.069 13.5 0.1 0.084 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) CAP18_C PF12153.8 gi|389846491|ref|YP_006348730.1| - 0.23 11.4 3.5 0.33 10.9 3.5 1.2 1 0 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) DUF4382 PF14321.6 gi|662859403|ref|YP_006348731.2| - 6.6e-23 81.5 24.8 9.8e-23 80.9 14.5 3.6 2 2 0 2 2 2 1 Domain of unknown function (DUF4382) DUF1943 PF09172.11 gi|662859403|ref|YP_006348731.2| - 0.032 13.5 1.9 2.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1943) CSD PF00313.22 gi|662859403|ref|YP_006348731.2| - 0.082 12.8 0.1 0.23 11.3 0.1 1.8 1 0 0 1 1 1 0 'Cold-shock' DNA-binding domain T2SSN PF01203.19 gi|662859403|ref|YP_006348731.2| - 0.51 10.5 7.3 10 6.3 1.3 3.1 1 1 0 2 2 2 0 Type II secretion system (T2SS), protein N Bactofilin PF04519.13 gi|662859403|ref|YP_006348731.2| - 0.71 10.2 13.9 0.48 10.7 5.4 3.7 3 2 0 3 3 3 0 Polymer-forming cytoskeletal CarboxypepD_reg PF13620.6 gi|662859403|ref|YP_006348731.2| - 8.9 6.7 19.6 0.61 10.4 3.7 3.8 2 1 1 3 3 3 0 Carboxypeptidase regulatory-like domain Pyr_redox_2 PF07992.14 gi|389846493|ref|YP_006348732.1| - 3.9e-29 101.8 0.0 5e-29 101.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389846493|ref|YP_006348732.1| - 2.9e-12 46.4 0.0 1e-07 31.5 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389846493|ref|YP_006348732.1| - 6.8e-06 26.6 0.0 0.0034 17.9 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|389846493|ref|YP_006348732.1| - 8.5e-06 25.1 2.7 0.00081 18.6 0.7 2.3 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.22 gi|389846493|ref|YP_006348732.1| - 6.9e-05 22.1 0.2 0.00016 20.9 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|389846493|ref|YP_006348732.1| - 8e-05 22.2 0.1 0.00012 21.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389846493|ref|YP_006348732.1| - 0.00049 18.9 0.2 0.0051 15.6 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|389846493|ref|YP_006348732.1| - 0.00083 19.0 2.2 0.0048 16.5 1.9 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|389846493|ref|YP_006348732.1| - 0.00088 18.6 0.5 0.0015 17.8 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.6 gi|389846493|ref|YP_006348732.1| - 0.0022 17.2 0.0 0.025 13.7 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|389846493|ref|YP_006348732.1| - 0.0069 15.7 0.1 0.011 15.1 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|389846493|ref|YP_006348732.1| - 0.016 15.4 0.9 0.048 13.9 0.9 1.9 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|389846493|ref|YP_006348732.1| - 0.016 15.2 0.2 0.58 10.1 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|389846493|ref|YP_006348732.1| - 0.039 13.2 0.0 0.067 12.4 0.0 1.4 1 0 0 1 1 1 0 Thi4 family zf-C2H2_jaz PF12171.8 gi|389846493|ref|YP_006348732.1| - 0.16 12.3 0.3 0.29 11.5 0.3 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Methyltransf_25 PF13649.6 gi|389846494|ref|YP_006348733.1| - 3.5e-21 75.7 0.2 9.1e-21 74.4 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846494|ref|YP_006348733.1| - 6.1e-21 74.9 0.2 1.1e-20 74.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846494|ref|YP_006348733.1| - 5.6e-13 48.9 0.0 7.8e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846494|ref|YP_006348733.1| - 7.7e-11 42.6 0.0 1.9e-10 41.4 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389846494|ref|YP_006348733.1| - 9.6e-11 41.5 0.0 1.2e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|389846494|ref|YP_006348733.1| - 9.4e-08 32.1 0.0 1.2e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|389846494|ref|YP_006348733.1| - 2.6e-05 23.0 0.0 3.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|389846494|ref|YP_006348733.1| - 8.3e-05 22.3 0.0 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|389846494|ref|YP_006348733.1| - 0.00018 21.2 0.0 0.00025 20.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|389846494|ref|YP_006348733.1| - 0.0011 18.0 0.0 0.0014 17.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|389846494|ref|YP_006348733.1| - 0.0062 16.4 0.0 0.033 14.0 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|389846494|ref|YP_006348733.1| - 0.034 14.1 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain AdoMet_MTase PF07757.13 gi|389846494|ref|YP_006348733.1| - 0.057 13.7 0.0 0.13 12.6 0.0 1.6 2 0 0 2 2 1 0 Predicted AdoMet-dependent methyltransferase TehB PF03848.14 gi|389846494|ref|YP_006348733.1| - 0.069 12.6 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_33 PF10017.9 gi|389846494|ref|YP_006348733.1| - 0.074 12.2 0.0 0.24 10.5 0.0 1.6 1 1 0 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent MTS PF05175.14 gi|389846494|ref|YP_006348733.1| - 0.088 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain TPMT PF05724.11 gi|389846494|ref|YP_006348733.1| - 0.1 12.3 0.1 0.19 11.4 0.1 1.6 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) T2SSF PF00482.23 gi|389846495|ref|YP_006348734.1| - 7.4e-39 132.6 9.3 6.7e-23 81.0 0.5 2.9 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|389846495|ref|YP_006348734.1| - 0.009 14.8 6.0 0.056 12.2 0.0 2.9 3 1 0 3 3 3 2 Predicted membrane protein (DUF2207) DUF2384 PF09722.10 gi|389846495|ref|YP_006348734.1| - 0.06 13.4 0.7 0.19 11.8 0.7 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) T2SSE PF00437.20 gi|389846496|ref|YP_006348735.1| - 4.1e-46 157.3 0.0 5.6e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|389846496|ref|YP_006348735.1| - 0.18 11.3 0.0 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region CrgA PF06781.12 gi|389846497|ref|YP_006348736.1| - 3 7.9 6.5 1.1 9.3 1.3 2.6 2 1 1 3 3 3 0 Cell division protein CrgA UDG PF03167.19 gi|389846499|ref|YP_006348738.1| - 6e-11 42.6 0.0 7.4e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4097 PF13349.6 gi|389846500|ref|YP_006348739.1| - 3e-10 39.9 14.8 9.6e-10 38.2 14.8 1.9 1 1 0 1 1 1 1 Putative adhesin TAT_signal PF10518.9 gi|389846500|ref|YP_006348739.1| - 0.021 14.7 5.1 0.039 13.8 5.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.27 gi|389846501|ref|YP_006348740.1| - 9.4e-29 100.8 4.4 1.1e-28 100.6 4.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389846501|ref|YP_006348740.1| - 0.00088 18.8 0.9 0.0014 18.2 0.9 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|389846501|ref|YP_006348740.1| - 0.036 14.0 0.1 0.051 13.5 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|389846501|ref|YP_006348740.1| - 0.13 11.7 0.2 0.25 10.8 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain DnaJ PF00226.31 gi|662859404|ref|YP_006348741.2| - 8e-21 73.9 0.8 1.2e-20 73.4 0.8 1.3 1 0 0 1 1 1 1 DnaJ domain LAP1C PF05609.12 gi|662859404|ref|YP_006348741.2| - 8.8e-05 21.8 6.2 0.00011 21.4 6.2 1.1 1 0 0 1 1 1 1 Lamina-associated polypeptide 1C (LAP1C) SPX PF03105.19 gi|662859404|ref|YP_006348741.2| - 0.0014 18.6 18.4 0.0017 18.4 18.4 1.2 1 0 0 1 1 1 1 SPX domain Hid1 PF12722.7 gi|662859404|ref|YP_006348741.2| - 0.014 13.5 7.7 0.017 13.3 7.7 1.2 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein SOG2 PF10428.9 gi|662859404|ref|YP_006348741.2| - 0.037 13.2 23.2 0.048 12.9 23.2 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Apt1 PF10351.9 gi|662859404|ref|YP_006348741.2| - 2.4 6.9 32.5 3.6 6.3 32.5 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF4551 PF15087.6 gi|662859404|ref|YP_006348741.2| - 2.8 6.7 13.1 3.5 6.3 13.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) Plasmodium_Vir PF05795.11 gi|662859404|ref|YP_006348741.2| - 2.8 7.3 8.9 3.9 6.8 8.9 1.3 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Utp14 PF04615.13 gi|662859404|ref|YP_006348741.2| - 6.3 5.2 21.9 8.3 4.9 21.9 1.0 1 0 0 1 1 1 0 Utp14 protein CAML PF14963.6 gi|662859404|ref|YP_006348741.2| - 8.1 6.5 14.7 12 5.9 14.7 1.4 1 0 0 1 1 1 0 Calcium signal-modulating cyclophilin ligand Lactamase_B PF00753.27 gi|389846503|ref|YP_006348742.1| - 5.4e-20 72.2 9.1 1.2e-19 71.1 9.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389846503|ref|YP_006348742.1| - 1.3e-05 24.8 2.9 0.0001 21.9 0.9 2.6 2 1 0 2 2 2 1 Beta-lactamase superfamily domain RNA_pol_L_2 PF13656.6 gi|389846504|ref|YP_006348743.1| - 5.4e-16 58.1 0.0 6.5e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|389846504|ref|YP_006348743.1| - 9.6e-05 21.7 0.0 0.00018 20.9 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1684 PF07920.11 gi|389846505|ref|YP_006348744.1| - 8.3e-51 171.9 0.1 1.1e-50 171.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) His_biosynth PF00977.21 gi|389846506|ref|YP_006348745.1| - 9.9e-82 273.8 0.1 1.1e-81 273.6 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|389846506|ref|YP_006348745.1| - 2.2e-09 36.9 0.0 2e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|389846506|ref|YP_006348745.1| - 2.4e-08 33.6 0.1 2.5e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|389846506|ref|YP_006348745.1| - 3.8e-07 29.8 0.3 0.00017 21.1 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|389846506|ref|YP_006348745.1| - 0.0008 18.9 0.0 0.0026 17.2 0.0 1.7 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|389846506|ref|YP_006348745.1| - 0.00098 18.4 0.0 0.0062 15.8 0.0 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|389846506|ref|YP_006348745.1| - 0.0062 15.9 0.0 0.17 11.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase PcrB PF01884.17 gi|389846506|ref|YP_006348745.1| - 0.018 14.5 0.1 0.028 13.9 0.1 1.4 1 0 0 1 1 1 0 PcrB family IMPDH PF00478.25 gi|389846506|ref|YP_006348745.1| - 0.037 13.0 0.3 0.06 12.3 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|389846506|ref|YP_006348745.1| - 0.046 12.9 0.0 0.079 12.1 0.0 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase IGPS PF00218.21 gi|389846506|ref|YP_006348745.1| - 0.074 12.2 0.0 0.36 10.0 0.0 1.9 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Glyoxalase_4 PF13669.6 gi|389846507|ref|YP_006348746.1| - 1.3e-06 28.6 0.0 4.6e-06 26.9 0.0 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alpha-amylase PF00128.24 gi|389846508|ref|YP_006348747.1| - 2.3e-110 369.3 0.4 3.4e-110 368.8 0.4 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|389846508|ref|YP_006348747.1| - 3.1e-06 27.4 0.0 8.7e-06 26.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|389846508|ref|YP_006348747.1| - 0.0028 17.7 0.0 0.0051 16.9 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain AIRS PF00586.24 gi|389846510|ref|YP_006348749.1| - 9e-43 144.9 4.9 4.8e-24 84.8 0.2 3.2 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|389846510|ref|YP_006348749.1| - 5.5e-42 143.5 11.2 2e-30 106.0 0.9 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|389846510|ref|YP_006348749.1| - 7e-06 26.5 0.0 1.7e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|389846510|ref|YP_006348749.1| - 0.56 10.6 4.3 1.3 9.5 0.0 2.9 3 0 0 3 3 3 0 GHMP kinases C terminal CBS PF00571.28 gi|389846511|ref|YP_006348750.1| - 2.8e-25 88.5 4.3 4.6e-14 52.6 0.1 2.2 2 0 0 2 2 2 2 CBS domain PHP_C PF13263.6 gi|389846512|ref|YP_006348751.1| - 4.2e-22 77.7 0.6 1.4e-21 76.0 0.7 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|389846512|ref|YP_006348751.1| - 1.2e-08 35.4 0.0 1.6e-08 35.0 0.0 1.2 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.21 gi|389846513|ref|YP_006348752.1| - 9.8e-34 117.6 4.5 2.1e-20 73.7 1.1 2.1 1 1 1 2 2 2 2 Asparagine synthase DUF5437 PF17505.2 gi|389846513|ref|YP_006348752.1| - 0.025 14.6 0.1 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5437) NAD_synthase PF02540.17 gi|389846513|ref|YP_006348752.1| - 0.074 12.2 0.3 0.13 11.3 0.3 1.4 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|389846513|ref|YP_006348752.1| - 0.2 10.4 0.1 0.31 9.8 0.1 1.4 1 0 0 1 1 1 0 tRNA methyl transferase NUDIX PF00293.28 gi|389846514|ref|YP_006348753.1| - 3.3e-12 46.6 0.1 4.6e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.19 gi|662859406|ref|YP_006348754.2| - 8.6e-41 137.8 0.2 2.7e-19 69.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|662859406|ref|YP_006348754.2| - 4.3e-18 64.6 2.9 8e-18 63.7 2.9 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|662859406|ref|YP_006348754.2| - 0.00054 19.6 0.8 0.0008 19.0 0.8 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|662859406|ref|YP_006348754.2| - 0.0016 18.5 0.0 1.3 9.1 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Ribosomal_S27e PF01667.17 gi|662859406|ref|YP_006348754.2| - 0.015 15.0 0.7 0.026 14.2 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|662859406|ref|YP_006348754.2| - 0.018 14.8 1.3 0.061 13.1 1.3 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.7 gi|662859406|ref|YP_006348754.2| - 0.022 14.8 0.8 0.038 14.0 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|662859406|ref|YP_006348754.2| - 0.025 14.2 0.3 0.06 13.0 0.3 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Cyclin_N PF00134.23 gi|662859406|ref|YP_006348754.2| - 0.028 14.2 0.0 0.066 13.0 0.0 1.6 2 0 0 2 2 2 0 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|662859406|ref|YP_006348754.2| - 0.04 13.5 5.4 0.22 11.0 0.0 3.8 4 0 0 4 4 4 0 Sigma-70, region 4 YpzI PF14140.6 gi|662859406|ref|YP_006348754.2| - 0.043 13.6 3.1 0.048 13.4 0.3 2.5 2 0 0 2 2 2 0 YpzI-like protein Elf1 PF05129.13 gi|662859406|ref|YP_006348754.2| - 0.094 12.8 0.5 0.2 11.7 0.5 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like RB_B PF01857.20 gi|662859406|ref|YP_006348754.2| - 0.1 12.6 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zf_UBZ PF18439.1 gi|662859406|ref|YP_006348754.2| - 0.11 12.1 1.1 8.2 6.1 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|662859406|ref|YP_006348754.2| - 0.12 11.8 3.0 0.85 9.1 3.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|662859406|ref|YP_006348754.2| - 0.14 12.5 0.4 0.14 12.5 0.4 1.8 2 0 0 2 2 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|662859406|ref|YP_006348754.2| - 0.17 12.0 4.0 0.83 9.8 3.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|662859406|ref|YP_006348754.2| - 2.2 8.3 4.9 6.1 6.9 4.9 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Glu-tRNAGln PF02686.15 gi|389846516|ref|YP_006348755.1| - 2.1e-15 56.8 4.8 2.1e-15 56.8 4.8 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Ferritin PF00210.24 gi|389846516|ref|YP_006348755.1| - 0.072 13.0 0.7 0.084 12.8 0.7 1.2 1 0 0 1 1 1 0 Ferritin-like domain DUF2420 PF10336.9 gi|389846516|ref|YP_006348755.1| - 0.12 12.5 0.1 0.15 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) Amidase PF01425.21 gi|389846517|ref|YP_006348756.1| - 1.2e-150 502.4 0.5 1.5e-150 502.2 0.5 1.0 1 0 0 1 1 1 1 Amidase CARDB PF07705.11 gi|389846518|ref|YP_006348757.1| - 0.00028 21.1 0.2 0.00073 19.8 0.0 1.7 2 0 0 2 2 2 1 CARDB TAT_signal PF10518.9 gi|389846518|ref|YP_006348757.1| - 0.019 14.8 0.3 0.036 13.9 0.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1416 PF07210.12 gi|389846518|ref|YP_006348757.1| - 0.2 11.5 0.3 1.9 8.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1416) TrkA_N PF02254.18 gi|389846519|ref|YP_006348758.1| - 2.2e-27 95.6 2.7 3.7e-27 94.9 2.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|389846519|ref|YP_006348758.1| - 4e-14 52.2 1.1 5.3e-13 48.6 0.1 2.5 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|389846519|ref|YP_006348758.1| - 6.3e-06 26.7 1.3 1.4e-05 25.5 0.7 1.9 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|389846519|ref|YP_006348758.1| - 8.1e-06 26.2 0.5 1.5e-05 25.4 0.5 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ADH_zinc_N PF00107.26 gi|389846519|ref|YP_006348758.1| - 7.3e-05 22.8 0.2 0.033 14.2 0.8 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.15 gi|389846519|ref|YP_006348758.1| - 0.00012 22.3 0.1 0.00018 21.7 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|389846519|ref|YP_006348758.1| - 0.00017 21.9 0.2 0.00024 21.3 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|389846519|ref|YP_006348758.1| - 0.00019 21.3 0.3 0.00028 20.8 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|389846519|ref|YP_006348758.1| - 0.00075 19.6 0.2 0.0013 18.8 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|389846519|ref|YP_006348758.1| - 0.0011 19.5 0.1 0.0019 18.7 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain GFO_IDH_MocA PF01408.22 gi|389846519|ref|YP_006348758.1| - 0.0019 19.0 0.5 0.0035 18.1 0.5 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.14 gi|389846519|ref|YP_006348758.1| - 0.0019 17.8 1.2 0.0083 15.7 0.4 2.0 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Peripla_BP_3 PF13377.6 gi|389846519|ref|YP_006348758.1| - 0.0021 18.4 0.2 0.0032 17.8 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain Pyr_redox PF00070.27 gi|389846519|ref|YP_006348758.1| - 0.0038 17.7 1.7 0.024 15.2 0.9 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|389846519|ref|YP_006348758.1| - 0.021 14.5 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|389846519|ref|YP_006348758.1| - 0.021 14.7 2.2 0.036 14.0 1.8 1.8 1 1 1 2 2 2 0 NAD(P)H-binding NmrA PF05368.13 gi|389846519|ref|YP_006348758.1| - 0.027 14.1 0.8 0.044 13.3 0.5 1.5 2 0 0 2 2 2 0 NmrA-like family TPALS PF18178.1 gi|389846519|ref|YP_006348758.1| - 0.027 13.9 0.2 0.043 13.2 0.2 1.3 1 0 0 1 1 1 0 TIR- and PNP-associating SLOG family 2-Hacid_dh_C PF02826.19 gi|389846519|ref|YP_006348758.1| - 0.039 13.3 0.1 0.076 12.4 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|389846519|ref|YP_006348758.1| - 0.053 12.7 1.2 0.11 11.6 0.2 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389846519|ref|YP_006348758.1| - 0.081 12.2 2.5 0.13 11.6 2.5 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DRTGG PF07085.12 gi|389846519|ref|YP_006348758.1| - 0.087 12.6 2.2 0.26 11.1 1.2 2.2 2 1 1 3 3 3 0 DRTGG domain NAD_Gly3P_dh_N PF01210.23 gi|389846519|ref|YP_006348758.1| - 0.12 12.4 0.2 0.19 11.7 0.2 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.10 gi|389846519|ref|YP_006348758.1| - 0.14 12.0 0.1 0.2 11.6 0.1 1.2 1 0 0 1 1 1 0 KR domain TrkH PF02386.16 gi|389846520|ref|YP_006348759.1| - 1.4e-103 347.0 12.1 1.4e-103 347.0 12.1 1.4 1 1 0 1 1 1 1 Cation transport protein TrkH PF02386.16 gi|389846521|ref|YP_006348760.1| - 1.1e-72 245.1 4.1 3.2e-72 243.6 4.1 1.6 1 1 0 1 1 1 1 Cation transport protein DUF5353 PF17304.2 gi|389846521|ref|YP_006348760.1| - 0.06 13.1 0.1 0.34 10.7 0.1 2.4 1 0 0 1 1 1 0 Family of unknown function (DUF5353) TrkA_N PF02254.18 gi|389846522|ref|YP_006348761.1| - 2.8e-51 172.6 9.2 4.7e-29 101.0 1.1 3.1 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|389846522|ref|YP_006348761.1| - 4.8e-33 112.8 4.3 8.1e-16 57.6 0.1 3.3 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|389846522|ref|YP_006348761.1| - 4.3e-10 40.0 0.7 0.00022 21.6 0.3 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|389846522|ref|YP_006348761.1| - 5.6e-10 39.4 0.2 0.00024 21.2 0.2 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|389846522|ref|YP_006348761.1| - 3.3e-09 37.1 0.3 0.00031 21.0 0.1 2.7 2 1 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|389846522|ref|YP_006348761.1| - 6.5e-09 35.9 1.0 0.0015 18.5 0.3 2.5 2 0 0 2 2 2 2 NAD(P)H-binding FAD_binding_3 PF01494.19 gi|389846522|ref|YP_006348761.1| - 1.5e-06 27.7 0.0 0.017 14.4 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain F420_oxidored PF03807.17 gi|389846522|ref|YP_006348761.1| - 2e-06 28.3 0.1 0.0023 18.5 0.0 3.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|389846522|ref|YP_006348761.1| - 0.00011 21.8 0.0 0.00036 20.2 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|389846522|ref|YP_006348761.1| - 0.00021 21.8 0.3 0.077 13.5 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain Pyr_redox_2 PF07992.14 gi|389846522|ref|YP_006348761.1| - 0.00025 20.4 1.1 0.006 15.8 1.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|389846522|ref|YP_006348761.1| - 0.0007 19.5 0.1 0.071 13.0 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|389846522|ref|YP_006348761.1| - 0.00093 18.6 0.2 0.16 11.2 0.5 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|389846522|ref|YP_006348761.1| - 0.0012 18.5 0.1 0.059 12.9 0.1 2.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Castor_Poll_mid PF06241.12 gi|389846522|ref|YP_006348761.1| - 0.0014 18.6 0.0 0.3 11.1 0.0 2.4 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel Pyr_redox PF00070.27 gi|389846522|ref|YP_006348761.1| - 0.0031 18.1 0.3 2.1 9.0 0.0 3.1 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|389846522|ref|YP_006348761.1| - 0.0044 17.0 0.0 0.33 10.9 0.0 2.6 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|389846522|ref|YP_006348761.1| - 0.0051 16.5 0.0 0.028 14.0 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|389846522|ref|YP_006348761.1| - 0.0088 15.4 0.0 4.1 6.7 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HEM4 PF02602.15 gi|389846522|ref|YP_006348761.1| - 0.014 14.8 0.0 0.077 12.3 0.0 2.1 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD GFO_IDH_MocA PF01408.22 gi|389846522|ref|YP_006348761.1| - 0.016 16.0 0.1 1.2 10.0 0.1 3.0 2 1 1 3 3 2 0 Oxidoreductase family, NAD-binding Rossmann fold DUF2325 PF10087.9 gi|389846522|ref|YP_006348761.1| - 0.018 15.1 0.1 6.1 7.0 0.0 2.9 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) NAD_binding_2 PF03446.15 gi|389846522|ref|YP_006348761.1| - 0.019 15.1 0.0 0.8 9.9 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1188 PF06690.11 gi|389846522|ref|YP_006348761.1| - 0.02 14.5 0.2 0.052 13.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) adh_short PF00106.25 gi|389846522|ref|YP_006348761.1| - 0.02 14.3 0.1 0.094 12.2 0.0 2.1 2 0 0 2 2 2 0 short chain dehydrogenase ThiF PF00899.21 gi|389846522|ref|YP_006348761.1| - 0.023 14.0 2.6 10 5.4 0.1 3.7 3 1 1 4 4 4 0 ThiF family AdoHcyase_NAD PF00670.21 gi|389846522|ref|YP_006348761.1| - 0.04 14.0 0.7 0.13 12.3 0.7 1.9 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain YflT PF11181.8 gi|389846522|ref|YP_006348761.1| - 0.043 14.3 0.2 0.15 12.6 0.0 2.0 2 0 0 2 2 1 0 Heat induced stress protein YflT adh_short_C2 PF13561.6 gi|389846522|ref|YP_006348761.1| - 0.045 13.3 0.2 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NAD_binding_8 PF13450.6 gi|389846522|ref|YP_006348761.1| - 0.048 13.9 0.0 6 7.2 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain PglD_N PF17836.1 gi|389846522|ref|YP_006348761.1| - 0.093 13.4 0.3 2 9.1 0.1 2.6 2 0 0 2 2 2 0 PglD N-terminal domain Rossmann-like PF10727.9 gi|389846522|ref|YP_006348761.1| - 0.13 12.2 0.5 3.9 7.4 0.0 2.8 3 1 0 3 3 3 0 Rossmann-like domain Polyketide_cyc2 PF10604.9 gi|389846523|ref|YP_006348762.1| - 4.1e-12 46.6 0.7 5.4e-12 46.2 0.7 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|389846523|ref|YP_006348762.1| - 9.4e-08 32.3 0.3 1.9e-07 31.3 0.3 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|389846523|ref|YP_006348762.1| - 0.0041 17.4 0.2 0.0054 17.0 0.2 1.3 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Pyr_redox_2 PF07992.14 gi|389846525|ref|YP_006348764.1| - 1.1e-13 51.1 4.1 8.1e-07 28.6 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|389846525|ref|YP_006348764.1| - 1.5e-10 40.7 4.6 1.9e-07 30.6 1.3 2.4 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|389846525|ref|YP_006348764.1| - 1.9e-06 27.7 3.6 0.00046 19.9 0.9 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|389846525|ref|YP_006348764.1| - 6.4e-06 26.3 0.1 1.4e-05 25.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|389846525|ref|YP_006348764.1| - 1.1e-05 24.9 2.0 3.7e-05 23.1 1.4 2.0 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|389846525|ref|YP_006348764.1| - 0.00012 21.4 0.1 0.013 14.8 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389846525|ref|YP_006348764.1| - 0.00024 20.3 0.4 0.00043 19.5 0.3 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|389846525|ref|YP_006348764.1| - 0.0004 19.8 2.3 0.00086 18.8 2.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|389846525|ref|YP_006348764.1| - 0.0027 18.2 0.4 0.007 16.9 0.4 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|389846525|ref|YP_006348764.1| - 0.0037 16.4 0.6 0.014 14.5 0.3 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|389846525|ref|YP_006348764.1| - 0.0048 15.7 0.2 0.0084 14.9 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|389846525|ref|YP_006348764.1| - 0.0055 16.0 0.1 0.012 14.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|389846525|ref|YP_006348764.1| - 0.011 14.6 3.6 0.49 9.2 1.8 2.4 2 1 1 3 3 3 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|389846525|ref|YP_006348764.1| - 0.025 13.9 0.1 0.05 12.9 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MCRA PF06100.11 gi|389846525|ref|YP_006348764.1| - 0.26 10.0 0.5 0.38 9.5 0.5 1.2 1 0 0 1 1 1 0 MCRA family DFP PF04127.15 gi|389846526|ref|YP_006348765.1| - 2.7e-44 151.2 6.4 6.3e-44 150.0 2.9 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|389846526|ref|YP_006348765.1| - 1.1e-34 119.5 1.0 1.8e-34 118.8 1.0 1.3 1 0 0 1 1 1 1 Flavoprotein DrsE PF02635.15 gi|389846526|ref|YP_006348765.1| - 0.12 12.8 0.2 0.42 11.0 0.0 2.0 2 0 0 2 2 2 0 DsrE/DsrF-like family Peripla_BP_4 PF13407.6 gi|389846526|ref|YP_006348765.1| - 3.7 7.0 11.7 7.7 6.0 0.1 3.4 3 1 0 3 3 3 0 Periplasmic binding protein domain PhaG_MnhG_YufB PF03334.14 gi|389846527|ref|YP_006348766.1| - 4.6e-24 84.5 8.8 7e-24 83.9 8.8 1.3 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|389846529|ref|YP_006348768.1| - 5.9e-20 71.4 4.6 5.9e-20 71.4 4.6 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 gi|389846530|ref|YP_006348769.1| - 2.6e-41 140.8 0.6 3e-41 140.6 0.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|389846531|ref|YP_006348770.1| - 1.1e-51 175.8 18.2 1.1e-51 175.8 18.2 2.5 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|389846531|ref|YP_006348770.1| - 0.00015 21.7 1.5 0.00015 21.7 1.5 2.6 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|389846532|ref|YP_006348771.1| - 1e-30 105.4 0.8 1.1e-30 105.3 0.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LapA_dom PF06305.11 gi|389846532|ref|YP_006348771.1| - 3.4 7.6 4.8 2.8 7.8 0.4 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain MnhB PF04039.13 gi|389846533|ref|YP_006348772.1| - 8.5e-36 123.0 8.9 1e-35 122.8 8.9 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter LPG_synthase_TM PF03706.13 gi|389846533|ref|YP_006348772.1| - 0.19 11.2 12.5 0.28 10.7 12.5 1.3 1 0 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region Proton_antipo_M PF00361.20 gi|389846534|ref|YP_006348773.1| - 6.2e-69 232.4 21.0 6.2e-69 232.4 21.0 2.8 2 1 1 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|389846534|ref|YP_006348773.1| - 1.9e-15 56.8 12.7 1.9e-15 56.8 12.7 4.7 5 0 0 5 5 5 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|389846534|ref|YP_006348773.1| - 6.4e-12 45.4 0.0 6.4e-12 45.4 0.0 3.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TrmB PF01978.19 gi|662859408|ref|YP_006348774.2| - 1.4e-08 34.5 0.0 2.8e-08 33.5 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|662859408|ref|YP_006348774.2| - 1.6e-07 31.3 2.3 2.4e-07 30.7 1.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|662859408|ref|YP_006348774.2| - 4e-06 26.6 0.4 7.4e-06 25.8 0.2 1.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|662859408|ref|YP_006348774.2| - 4.9e-05 22.8 0.0 8.1e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|662859408|ref|YP_006348774.2| - 0.00014 21.6 0.1 0.00022 21.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|662859408|ref|YP_006348774.2| - 0.00018 21.4 0.0 0.00037 20.4 0.0 1.5 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|662859408|ref|YP_006348774.2| - 0.0019 17.9 0.5 0.0087 15.8 0.3 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|662859408|ref|YP_006348774.2| - 0.0022 17.8 1.0 0.0057 16.5 1.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain NifZ PF04319.13 gi|662859408|ref|YP_006348774.2| - 0.0044 16.8 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 NifZ domain MarR PF01047.22 gi|662859408|ref|YP_006348774.2| - 0.0049 16.8 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|662859408|ref|YP_006348774.2| - 0.011 16.2 0.2 0.024 15.1 0.1 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain PadR PF03551.14 gi|662859408|ref|YP_006348774.2| - 0.014 15.4 0.0 0.032 14.2 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_23 PF13384.6 gi|662859408|ref|YP_006348774.2| - 0.015 15.0 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain RP-C PF03428.13 gi|662859408|ref|YP_006348774.2| - 0.017 14.8 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain FUR PF01475.19 gi|662859408|ref|YP_006348774.2| - 0.031 14.4 0.0 0.054 13.6 0.0 1.4 1 1 1 2 2 2 0 Ferric uptake regulator family HTH_29 PF13551.6 gi|662859408|ref|YP_006348774.2| - 0.054 13.5 0.1 0.094 12.7 0.1 1.4 2 0 0 2 2 2 0 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|662859408|ref|YP_006348774.2| - 0.091 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Pribosyltran PF00156.27 gi|389846537|ref|YP_006348776.1| - 5e-16 58.6 2.2 7.6e-16 58.0 2.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389846537|ref|YP_006348776.1| - 0.015 14.8 0.1 0.021 14.3 0.1 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SBP_bac_5 PF00496.22 gi|389846538|ref|YP_006348777.1| - 1.2e-45 156.1 6.4 9.3e-37 126.9 3.4 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389846538|ref|YP_006348777.1| - 0.00073 19.3 0.2 0.0012 18.6 0.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|389846539|ref|YP_006348778.1| - 4.7e-33 114.5 14.1 4.7e-33 114.5 14.1 2.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF1453 PF07301.11 gi|389846539|ref|YP_006348778.1| - 0.089 12.8 4.6 1.5 8.8 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1453) BPD_transp_1 PF00528.22 gi|389846540|ref|YP_006348779.1| - 5.1e-28 98.1 3.5 5.1e-28 98.1 3.5 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389846540|ref|YP_006348779.1| - 5.6e-08 32.6 1.1 5.6e-08 32.6 1.1 3.0 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C SpoVAB PF13782.6 gi|389846540|ref|YP_006348779.1| - 0.092 13.0 3.1 1.5 9.1 0.1 2.6 2 0 0 2 2 2 0 Stage V sporulation protein AB ABC_tran PF00005.27 gi|389846541|ref|YP_006348780.1| - 9.8e-26 90.9 0.0 1.3e-25 90.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389846541|ref|YP_006348780.1| - 2.3e-18 66.4 0.8 4.1e-18 65.6 0.3 1.7 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389846541|ref|YP_006348780.1| - 1.3e-05 25.1 0.4 4.6e-05 23.4 0.0 1.8 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389846541|ref|YP_006348780.1| - 0.00037 20.8 1.1 0.014 15.7 1.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389846541|ref|YP_006348780.1| - 0.002 17.6 0.2 0.23 10.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|389846541|ref|YP_006348780.1| - 0.005 15.7 0.6 0.019 13.8 0.6 1.8 1 1 0 1 1 1 1 Predicted ATPase of the ABC class TniB PF05621.11 gi|389846541|ref|YP_006348780.1| - 0.0076 15.7 0.0 0.56 9.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|389846541|ref|YP_006348780.1| - 0.038 14.4 0.1 0.06 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|389846541|ref|YP_006348780.1| - 0.053 13.9 0.0 0.2 12.1 0.0 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|389846541|ref|YP_006348780.1| - 0.079 12.6 0.1 0.13 11.9 0.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Lac_bphage_repr PF06543.12 gi|389846541|ref|YP_006348780.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Lactococcus bacteriophage repressor NACHT PF05729.12 gi|389846541|ref|YP_006348780.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 gi|389846541|ref|YP_006348780.1| - 0.21 11.4 0.0 0.38 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|389846542|ref|YP_006348781.1| - 1e-31 110.3 0.0 1.7e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389846542|ref|YP_006348781.1| - 2.5e-18 66.3 0.0 5.3e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389846542|ref|YP_006348781.1| - 6.7e-06 26.1 0.3 5.8e-05 23.0 0.1 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389846542|ref|YP_006348781.1| - 0.0002 21.6 0.1 0.0028 17.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389846542|ref|YP_006348781.1| - 0.0072 16.7 0.9 0.014 15.8 0.2 2.0 2 1 0 2 2 2 1 AAA ATPase domain DUF2909 PF11137.8 gi|389846542|ref|YP_006348781.1| - 0.032 14.2 0.2 0.071 13.0 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) ATP-synt_ab PF00006.25 gi|389846542|ref|YP_006348781.1| - 0.1 12.3 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 gi|389846542|ref|YP_006348781.1| - 0.12 12.0 0.0 0.46 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|389846542|ref|YP_006348781.1| - 0.15 10.7 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|389846542|ref|YP_006348781.1| - 0.21 11.0 0.0 24 4.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|389846542|ref|YP_006348781.1| - 0.22 11.3 0.0 0.42 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UxaC PF02614.14 gi|389846542|ref|YP_006348781.1| - 0.23 10.3 0.0 0.34 9.7 0.0 1.1 1 0 0 1 1 1 0 Glucuronate isomerase DJ-1_PfpI PF01965.24 gi|389846543|ref|YP_006348782.1| - 1.6e-13 50.8 0.2 3.7e-12 46.3 0.2 2.2 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|389846543|ref|YP_006348782.1| - 1.2e-08 34.9 0.0 1.9e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|389846543|ref|YP_006348782.1| - 0.013 15.1 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTH_20 PF12840.7 gi|389846544|ref|YP_006348783.1| - 3.2e-05 23.9 0.1 7.6e-05 22.7 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389846544|ref|YP_006348783.1| - 8.8e-05 22.3 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|389846544|ref|YP_006348783.1| - 0.0013 18.9 0.2 0.002 18.2 0.2 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_IclR PF09339.10 gi|389846544|ref|YP_006348783.1| - 0.0099 15.7 0.1 0.015 15.1 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389846544|ref|YP_006348783.1| - 0.028 14.3 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|389846544|ref|YP_006348783.1| - 0.095 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain zf-trcl PF13451.6 gi|389846544|ref|YP_006348783.1| - 0.14 12.1 0.7 0.14 12.1 0.7 2.0 1 1 1 2 2 2 0 Probable zinc-ribbon domain HTH_11 PF08279.12 gi|389846544|ref|YP_006348783.1| - 0.2 11.7 0.0 0.38 10.7 0.0 1.5 1 1 0 1 1 1 0 HTH domain HypA PF01155.19 gi|389846544|ref|YP_006348783.1| - 0.22 11.6 0.9 0.35 10.9 0.6 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|389846544|ref|YP_006348783.1| - 1.3 8.9 7.4 2.1 8.1 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|389846544|ref|YP_006348783.1| - 2.5 8.3 7.4 19 5.4 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NTP_transferase PF00483.23 gi|389846545|ref|YP_006348784.1| - 1e-38 133.3 0.0 1.5e-38 132.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389846545|ref|YP_006348784.1| - 1.3e-08 35.4 0.0 1.7e-08 34.9 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|389846545|ref|YP_006348784.1| - 0.029 14.1 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.24 gi|389846545|ref|YP_006348784.1| - 0.22 11.3 0.2 4.7 7.1 0.0 2.7 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Diphthami_syn_2 PF01902.17 gi|389846546|ref|YP_006348785.1| - 2.2e-56 190.8 0.0 5e-56 189.7 0.0 1.5 1 1 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|389846546|ref|YP_006348785.1| - 0.044 13.3 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|389846546|ref|YP_006348785.1| - 0.23 11.0 0.0 0.32 10.6 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DIPSY PF11763.8 gi|389846547|ref|YP_006348786.1| - 0.071 13.3 1.9 3.2 7.9 0.2 2.6 2 1 1 3 3 3 0 Cell-wall adhesin ligand-binding C-terminal PAPS_reduct PF01507.19 gi|389846550|ref|YP_006348789.1| - 1.4e-17 64.3 0.0 1.5e-13 51.2 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|389846550|ref|YP_006348789.1| - 0.043 13.3 0.0 0.098 12.1 0.0 1.5 2 0 0 2 2 2 0 Diphthamide synthase F_bP_aldolase PF01116.20 gi|389846550|ref|YP_006348789.1| - 0.19 11.2 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II Q_salvage PF10343.9 gi|662859410|ref|YP_006348790.2| - 0.19 11.3 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Potential Queuosine, Q, salvage protein family Glutaredoxin PF00462.24 gi|389846552|ref|YP_006348791.1| - 3.7e-14 52.7 0.0 1.1e-13 51.1 0.0 1.7 2 0 0 2 2 2 1 Glutaredoxin Pribosyltran PF00156.27 gi|389846553|ref|YP_006348792.1| - 7.4e-18 64.6 0.0 1.4e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|389846553|ref|YP_006348792.1| - 0.00016 21.4 0.0 0.00032 20.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|389846553|ref|YP_006348792.1| - 0.0032 17.4 0.3 0.1 12.5 0.1 2.5 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.15 gi|389846553|ref|YP_006348792.1| - 0.0071 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|389846553|ref|YP_006348792.1| - 0.022 14.2 0.0 0.05 13.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|389846553|ref|YP_006348792.1| - 0.027 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PRTase_2 PF15609.6 gi|389846553|ref|YP_006348792.1| - 0.065 12.7 0.5 0.22 11.0 0.1 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase MarR_2 PF12802.7 gi|389846553|ref|YP_006348792.1| - 0.075 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|389846553|ref|YP_006348792.1| - 0.11 12.2 0.1 0.74 9.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389846553|ref|YP_006348792.1| - 0.16 12.0 0.0 0.4 10.7 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Glu_dehyd_C PF16912.5 gi|389846554|ref|YP_006348793.1| - 4e-101 336.9 0.0 5.1e-101 336.5 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|389846554|ref|YP_006348793.1| - 3.9e-09 36.4 0.0 6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|389846554|ref|YP_006348793.1| - 0.00059 19.8 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|389846554|ref|YP_006348793.1| - 0.00074 19.4 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Lyase_1 PF00206.20 gi|389846556|ref|YP_006348795.1| - 1.8e-49 168.8 0.0 2.4e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|389846556|ref|YP_006348795.1| - 8.1e-42 141.9 0.0 1.5e-41 141.1 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal AICARFT_IMPCHas PF01808.18 gi|389846557|ref|YP_006348796.1| - 1.1e-84 284.4 0.0 1.4e-84 284.0 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|389846557|ref|YP_006348796.1| - 5e-44 150.2 0.0 1e-43 149.2 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase LPD22 PF18834.1 gi|389846557|ref|YP_006348796.1| - 0.19 12.0 2.0 0.19 11.9 0.1 2.0 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 Usp PF00582.26 gi|389846558|ref|YP_006348797.1| - 7.9e-33 113.9 2.6 8.8e-33 113.8 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Pterin_bind PF00809.22 gi|389846559|ref|YP_006348798.1| - 4.7e-77 259.0 0.7 7.4e-77 258.3 0.7 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|389846559|ref|YP_006348798.1| - 6e-15 55.7 0.0 1.1e-14 54.9 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|389846559|ref|YP_006348798.1| - 3.9e-11 43.1 0.0 1.9e-10 40.8 0.0 2.3 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain MazG PF03819.17 gi|389846559|ref|YP_006348798.1| - 0.075 13.2 0.5 26 5.1 0.0 3.7 4 0 0 4 4 4 0 MazG nucleotide pyrophosphohydrolase domain bZIP_2 PF07716.15 gi|389846560|ref|YP_006348799.1| - 0.028 14.5 4.0 0.034 14.2 4.0 1.1 1 0 0 1 1 1 0 Basic region leucine zipper Phage_holin_3_6 PF07332.11 gi|389846560|ref|YP_006348799.1| - 0.038 14.0 0.0 0.041 13.9 0.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III TMEM154 PF15102.6 gi|389846560|ref|YP_006348799.1| - 0.046 13.6 0.0 0.051 13.5 0.0 1.1 1 0 0 1 1 1 0 TMEM154 protein family LapA_dom PF06305.11 gi|389846560|ref|YP_006348799.1| - 0.052 13.4 1.7 0.057 13.2 1.2 1.5 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain LRR19-TM PF15176.6 gi|389846560|ref|YP_006348799.1| - 0.061 13.3 0.0 0.07 13.1 0.0 1.0 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain DUF1192 PF06698.11 gi|389846560|ref|YP_006348799.1| - 0.097 12.7 4.7 0.12 12.5 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) XhlA PF10779.9 gi|389846560|ref|YP_006348799.1| - 0.24 11.6 1.1 0.32 11.2 1.0 1.4 1 1 0 1 1 1 0 Haemolysin XhlA TANGO2 PF05742.12 gi|389846561|ref|YP_006348800.1| - 1.3e-25 90.9 0.0 2.7e-25 89.9 0.0 1.5 1 1 0 1 1 1 1 Transport and Golgi organisation 2 B-block_TFIIIC PF04182.12 gi|389846562|ref|YP_006348801.1| - 0.0003 20.9 0.0 0.0004 20.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|389846562|ref|YP_006348801.1| - 0.00067 19.5 0.0 0.00098 19.0 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|389846562|ref|YP_006348801.1| - 0.0031 17.4 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 MarR family Proteasome PF00227.26 gi|389846563|ref|YP_006348802.1| - 6.3e-58 195.4 0.0 8e-58 195.1 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|389846563|ref|YP_006348802.1| - 1.5e-13 50.1 0.1 1.5e-13 50.1 0.1 1.7 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature BACK PF07707.15 gi|389846563|ref|YP_006348802.1| - 0.17 12.0 1.0 0.35 11.0 1.0 1.4 1 0 0 1 1 1 0 BTB And C-terminal Kelch RNase_P_Rpp14 PF01900.19 gi|389846564|ref|YP_006348803.1| - 4.1e-21 75.1 0.0 1e-20 73.9 0.0 1.6 1 1 1 2 2 2 1 Rpp14/Pop5 family Methyltransf_25 PF13649.6 gi|389846565|ref|YP_006348804.1| - 3.5e-19 69.3 0.3 6.7e-19 68.4 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846565|ref|YP_006348804.1| - 1.6e-16 60.4 0.0 2.3e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846565|ref|YP_006348804.1| - 4.9e-15 56.0 0.2 1.1e-14 54.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846565|ref|YP_006348804.1| - 3e-13 50.3 0.1 5.8e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389846565|ref|YP_006348804.1| - 2.5e-09 36.8 0.1 4.5e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|389846565|ref|YP_006348804.1| - 1.9e-07 31.1 0.0 2.9e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389846565|ref|YP_006348804.1| - 3.7e-06 26.6 0.0 5.5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|389846565|ref|YP_006348804.1| - 8.1e-06 25.4 0.1 1.2e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|389846565|ref|YP_006348804.1| - 0.00044 20.3 0.0 0.00062 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|389846565|ref|YP_006348804.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|389846565|ref|YP_006348804.1| - 0.0013 18.0 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|389846565|ref|YP_006348804.1| - 0.0024 17.0 0.0 0.0036 16.4 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase tRNA_U5-meth_tr PF05958.11 gi|389846565|ref|YP_006348804.1| - 0.0038 16.3 0.0 0.0057 15.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.18 gi|389846565|ref|YP_006348804.1| - 0.013 15.2 0.1 0.055 13.2 0.1 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|389846565|ref|YP_006348804.1| - 0.022 14.5 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|389846565|ref|YP_006348804.1| - 0.03 13.4 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|389846565|ref|YP_006348804.1| - 0.033 13.7 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase NodS PF05401.11 gi|389846565|ref|YP_006348804.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) ADH_zinc_N PF00107.26 gi|389846565|ref|YP_006348804.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase RNase_P_p30 PF01876.16 gi|389846566|ref|YP_006348805.1| - 3.9e-36 124.5 0.0 6.8e-36 123.8 0.0 1.4 1 1 0 1 1 1 1 RNase P subunit p30 PGF-CTERM PF18204.1 gi|389846567|ref|YP_006348806.1| - 5.7e-06 26.1 1.4 2.2e-05 24.3 1.4 2.0 1 0 0 1 1 1 1 PGF-CTERM motif Peptidase_M20 PF01546.28 gi|389846568|ref|YP_006348807.1| - 1.8e-22 80.1 0.4 3.4e-22 79.1 0.4 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|389846568|ref|YP_006348807.1| - 5.8e-18 64.8 0.0 1.4e-17 63.6 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|389846568|ref|YP_006348807.1| - 0.078 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M28 DAP_epimerase PF01678.19 gi|389846569|ref|YP_006348808.1| - 4.1e-43 146.4 1.3 5.7e-22 78.1 0.2 2.2 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|389846569|ref|YP_006348808.1| - 0.0096 15.0 0.6 1.2 8.2 0.2 2.2 2 0 0 2 2 2 2 Proline racemase PhzC-PhzF PF02567.16 gi|389846569|ref|YP_006348808.1| - 0.011 15.3 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 0 Phenazine biosynthesis-like protein Orn_Arg_deC_N PF02784.16 gi|389846570|ref|YP_006348809.1| - 2.3e-41 141.8 0.0 2.8e-41 141.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|389846570|ref|YP_006348809.1| - 7.9e-24 83.7 0.0 7.9e-24 83.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|389846570|ref|YP_006348809.1| - 6.6e-06 25.9 0.1 1e-05 25.3 0.1 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain EccE PF11203.8 gi|389846570|ref|YP_006348809.1| - 0.075 13.4 0.7 0.39 11.1 0.3 2.2 1 1 1 2 2 2 0 Putative type VII ESX secretion system translocon, EccE THDPS_N_2 PF14805.6 gi|389846571|ref|YP_006348810.1| - 1.1e-21 76.9 0.4 1.6e-21 76.3 0.4 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|389846571|ref|YP_006348810.1| - 1.7e-10 40.1 6.7 0.0014 18.3 0.3 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389846571|ref|YP_006348810.1| - 0.00015 21.5 9.9 0.0025 17.5 0.8 3.8 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|389846572|ref|YP_006348811.1| - 9e-36 122.6 0.0 1.3e-35 122.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|389846572|ref|YP_006348811.1| - 1.8e-26 92.7 0.1 2.7e-26 92.1 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|389846572|ref|YP_006348811.1| - 1.7e-07 31.6 0.0 2.8e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|389846572|ref|YP_006348811.1| - 4.9e-05 24.0 0.1 8.8e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|389846572|ref|YP_006348811.1| - 0.00096 19.6 0.1 0.0018 18.7 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.6 gi|389846572|ref|YP_006348811.1| - 0.01 15.5 0.4 0.016 14.9 0.4 1.3 1 0 0 1 1 1 0 Periplasmic binding protein RmlD_sub_bind PF04321.17 gi|389846572|ref|YP_006348811.1| - 0.023 13.8 0.2 0.074 12.1 0.0 1.6 1 1 1 2 2 2 0 RmlD substrate binding domain GFO_IDH_MocA PF01408.22 gi|389846572|ref|YP_006348811.1| - 0.03 15.1 0.1 0.067 14.0 0.0 1.6 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|389846572|ref|YP_006348811.1| - 0.044 13.2 0.0 0.065 12.7 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DHDPS PF00701.22 gi|389846573|ref|YP_006348812.1| - 4.2e-93 311.2 0.0 4.8e-93 311.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NMO PF03060.15 gi|389846573|ref|YP_006348812.1| - 0.053 12.9 0.1 0.085 12.2 0.1 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase ThiG PF05690.14 gi|389846573|ref|YP_006348812.1| - 0.068 12.5 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG HTH_32 PF13565.6 gi|389846573|ref|YP_006348812.1| - 0.13 12.9 0.2 28 5.4 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain NYN PF01936.18 gi|389846575|ref|YP_006348814.1| - 1.1e-37 129.7 0.3 1.4e-37 129.4 0.3 1.0 1 0 0 1 1 1 1 NYN domain DUF2529 PF10740.9 gi|389846575|ref|YP_006348814.1| - 0.012 15.3 0.0 0.039 13.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) FMO-like PF00743.19 gi|389846575|ref|YP_006348814.1| - 0.078 11.4 0.0 0.098 11.0 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like PIN7 PF18475.1 gi|389846575|ref|YP_006348814.1| - 0.078 13.6 0.0 0.11 13.2 0.0 1.4 1 0 0 1 1 1 0 PIN domain DUF975 PF06161.11 gi|389846576|ref|YP_006348815.1| - 0.022 14.5 10.5 0.041 13.7 10.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF975) Ndc1_Nup PF09531.10 gi|389846576|ref|YP_006348815.1| - 0.67 8.6 9.4 0.87 8.2 9.4 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup TGT_C2 PF14810.6 gi|389846577|ref|YP_006348816.1| - 7e-25 86.9 0.2 1.2e-24 86.2 0.2 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|389846577|ref|YP_006348816.1| - 1.4e-16 60.2 0.1 2.1e-16 59.7 0.1 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|389846577|ref|YP_006348816.1| - 0.016 15.5 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 UPF0113 PUA domain TruB-C_2 PF09157.11 gi|389846577|ref|YP_006348816.1| - 0.029 14.4 0.2 2.8 8.1 0.0 2.9 1 1 1 3 3 3 0 Pseudouridine synthase II TruB, C-terminal SPP PF06550.11 gi|389846578|ref|YP_006348817.1| - 1.7e-85 287.0 11.3 2.6e-85 286.3 11.3 1.2 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|389846578|ref|YP_006348817.1| - 3.9e-07 29.9 2.6 0.00013 21.6 1.3 2.5 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|389846578|ref|YP_006348817.1| - 0.00092 18.1 7.9 0.013 14.3 1.7 3.0 2 1 1 3 3 3 2 Presenilin Gar1 PF04410.14 gi|389846579|ref|YP_006348818.1| - 4.1e-09 36.4 0.0 4.1e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|389846580|ref|YP_006348819.1| - 1e-23 84.0 0.1 1.2e-23 83.9 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein GIDE PF12483.8 gi|389846581|ref|YP_006348820.1| - 0.0044 16.4 0.1 0.028 13.8 0.1 2.1 1 1 0 1 1 1 1 E3 Ubiquitin ligase Lactamase_B PF00753.27 gi|389846581|ref|YP_006348820.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily Peripla_BP_2 PF01497.18 gi|389846582|ref|YP_006348821.1| - 8.2e-32 110.7 0.3 1.5e-31 109.8 0.3 1.4 1 0 0 1 1 1 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|389846582|ref|YP_006348821.1| - 3.4e-05 23.6 4.9 3.4e-05 23.6 4.9 2.0 2 0 0 2 2 2 1 PGF-CTERM motif Trypan_PARP PF05887.11 gi|389846582|ref|YP_006348821.1| - 0.014 15.3 8.3 0.027 14.4 5.6 2.4 2 1 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) CDC45 PF02724.14 gi|389846582|ref|YP_006348821.1| - 0.02 13.2 0.1 0.027 12.8 0.1 1.1 1 0 0 1 1 1 0 CDC45-like protein DUF2474 PF10617.9 gi|389846582|ref|YP_006348821.1| - 3.2 7.7 4.6 14 5.7 3.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) FecCD PF01032.18 gi|389846583|ref|YP_006348822.1| - 6.9e-90 301.2 33.0 2.2e-89 299.6 33.0 1.6 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|389846583|ref|YP_006348822.1| - 0.00067 19.2 21.7 0.00067 19.2 21.7 2.1 2 1 1 3 3 3 1 ABC 3 transport family ABC_tran PF00005.27 gi|389846584|ref|YP_006348823.1| - 1.3e-30 106.7 0.0 2.1e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389846584|ref|YP_006348823.1| - 3.5e-09 36.9 0.2 5.7e-05 23.1 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|389846584|ref|YP_006348823.1| - 2.2e-05 24.9 0.2 6.9e-05 23.3 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|389846584|ref|YP_006348823.1| - 8.3e-05 23.2 0.0 0.00012 22.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389846584|ref|YP_006348823.1| - 0.00033 20.2 0.0 0.0019 17.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|389846584|ref|YP_006348823.1| - 0.00092 19.0 0.5 0.00092 19.0 0.5 2.1 2 1 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|389846584|ref|YP_006348823.1| - 0.0034 16.4 1.5 0.0061 15.6 0.2 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|389846584|ref|YP_006348823.1| - 0.0037 17.2 0.0 0.0074 16.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|389846584|ref|YP_006348823.1| - 0.0047 16.7 0.2 0.01 15.5 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|389846584|ref|YP_006348823.1| - 0.0067 15.7 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|389846584|ref|YP_006348823.1| - 0.0083 16.4 0.2 0.049 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|389846584|ref|YP_006348823.1| - 0.03 14.5 1.0 0.11 12.7 0.9 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|389846584|ref|YP_006348823.1| - 0.047 13.1 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|389846584|ref|YP_006348823.1| - 0.064 12.9 0.0 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|389846584|ref|YP_006348823.1| - 0.068 13.1 0.4 0.79 9.6 0.1 2.2 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|389846584|ref|YP_006348823.1| - 0.07 13.1 0.3 0.31 11.0 0.3 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|389846584|ref|YP_006348823.1| - 0.076 13.3 0.8 0.26 11.5 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|389846584|ref|YP_006348823.1| - 0.077 13.4 0.1 0.42 11.1 0.1 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|389846584|ref|YP_006348823.1| - 0.089 13.1 0.2 0.089 13.1 0.2 2.0 2 0 0 2 2 1 0 AAA domain TsaE PF02367.17 gi|389846584|ref|YP_006348823.1| - 0.09 12.8 0.2 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|389846584|ref|YP_006348823.1| - 0.098 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_14 PF13173.6 gi|389846584|ref|YP_006348823.1| - 0.11 12.5 0.0 0.73 9.9 0.0 2.3 3 0 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.23 gi|389846584|ref|YP_006348823.1| - 0.17 12.0 0.1 0.42 10.7 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|389846584|ref|YP_006348823.1| - 0.21 11.2 1.5 0.28 10.8 0.2 1.9 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|389846584|ref|YP_006348823.1| - 0.33 9.6 0.2 4.1 5.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|389846584|ref|YP_006348823.1| - 0.44 9.3 2.6 3 6.5 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Tubulin PF00091.25 gi|389846585|ref|YP_006348824.1| - 2e-22 80.4 0.0 2.9e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|389846585|ref|YP_006348824.1| - 0.2 10.8 0.0 0.37 9.9 0.0 1.4 1 0 0 1 1 1 0 Tubulin like PIN_5 PF08745.11 gi|389846586|ref|YP_006348825.1| - 8.8e-77 257.2 0.1 1e-76 257.0 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease PIN_3 PF13470.6 gi|389846586|ref|YP_006348825.1| - 0.062 14.1 0.7 0.41 11.4 0.7 2.0 1 1 0 1 1 1 0 PIN domain CorA PF01544.18 gi|389846586|ref|YP_006348825.1| - 0.069 12.4 0.1 0.12 11.7 0.1 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HTH_20 PF12840.7 gi|389846588|ref|YP_006348827.1| - 5.5e-10 39.2 0.6 7.3e-10 38.8 0.6 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389846588|ref|YP_006348827.1| - 4.7e-06 26.3 0.3 1.1e-05 25.1 0.1 1.6 1 1 1 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389846588|ref|YP_006348827.1| - 0.00019 21.2 0.0 0.00033 20.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389846588|ref|YP_006348827.1| - 0.0023 17.8 0.2 0.0038 17.1 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|389846588|ref|YP_006348827.1| - 0.0048 16.7 0.0 0.0075 16.1 0.0 1.4 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|389846588|ref|YP_006348827.1| - 0.01 15.4 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|389846588|ref|YP_006348827.1| - 0.012 15.6 0.2 0.019 14.9 0.2 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FUR PF01475.19 gi|389846588|ref|YP_006348827.1| - 0.016 15.4 0.0 0.021 15.0 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_11 PF08279.12 gi|389846588|ref|YP_006348827.1| - 0.15 12.0 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.12 gi|662859411|ref|YP_006348829.2| - 8.5e-22 76.7 0.0 1.3e-21 76.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|662859411|ref|YP_006348829.2| - 0.0037 17.2 2.1 0.0077 16.1 2.1 1.6 1 1 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|662859411|ref|YP_006348829.2| - 0.018 14.6 0.0 0.049 13.2 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|662859411|ref|YP_006348829.2| - 0.024 14.2 0.1 1.9 8.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|662859411|ref|YP_006348829.2| - 0.1 12.4 0.3 0.64 9.8 0.3 2.1 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|662859411|ref|YP_006348829.2| - 0.15 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Copper-bind PF00127.20 gi|389846591|ref|YP_006348830.1| - 8.9e-15 54.9 0.2 2.4e-14 53.6 0.2 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|389846591|ref|YP_006348830.1| - 6.5e-05 22.6 2.6 6.5e-05 22.6 2.6 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|389846591|ref|YP_006348830.1| - 0.0012 19.0 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.20 gi|389846591|ref|YP_006348830.1| - 0.011 15.5 4.1 0.013 15.3 2.9 1.7 1 1 0 1 1 1 0 PKD domain PaaB PF06243.11 gi|389846592|ref|YP_006348831.1| - 1.7e-08 34.6 0.0 2.1e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|389846593|ref|YP_006348832.1| - 9.5e-25 87.9 0.0 2.5e-23 83.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|389846593|ref|YP_006348832.1| - 7.7e-13 48.9 0.0 4.2e-12 46.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|389846593|ref|YP_006348832.1| - 8.2e-08 32.4 0.0 3.2e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|389846593|ref|YP_006348832.1| - 2.4e-05 24.8 0.6 7e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Pyr_redox_2 PF07992.14 gi|389846595|ref|YP_006348834.1| - 1.1e-42 146.2 0.2 1.3e-42 146.0 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389846595|ref|YP_006348834.1| - 8e-19 68.0 0.3 1.2e-16 61.0 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389846595|ref|YP_006348834.1| - 4.9e-17 62.1 0.0 7.5e-16 58.2 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|389846595|ref|YP_006348834.1| - 7e-05 22.6 0.5 0.077 12.6 0.0 3.1 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|389846595|ref|YP_006348834.1| - 0.00041 20.5 0.0 0.0015 18.7 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|389846595|ref|YP_006348834.1| - 0.0012 18.0 3.8 0.13 11.4 0.0 3.1 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|389846595|ref|YP_006348834.1| - 0.0019 17.0 0.1 5.5 5.6 0.0 3.8 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.6 gi|389846595|ref|YP_006348834.1| - 0.0032 17.9 0.0 0.013 15.9 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.22 gi|389846595|ref|YP_006348834.1| - 0.0059 15.7 0.1 10 5.1 0.0 3.7 4 0 0 4 4 4 1 Glucose inhibited division protein A FMO-like PF00743.19 gi|389846595|ref|YP_006348834.1| - 0.017 13.6 0.0 2.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like FAD_oxidored PF12831.7 gi|389846595|ref|YP_006348834.1| - 0.043 13.2 0.0 0.23 10.8 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase HicB_lk_antitox PF15919.5 gi|389846595|ref|YP_006348834.1| - 0.083 13.0 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system AlaDh_PNT_C PF01262.21 gi|389846595|ref|YP_006348834.1| - 0.085 12.1 0.0 9.5 5.4 0.0 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF357 PF04010.13 gi|389846596|ref|YP_006348835.1| - 2.1e-30 104.6 0.5 2.5e-30 104.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) HisKA_7TM PF16927.5 gi|389846597|ref|YP_006348836.1| - 9.2e-47 159.9 26.3 1.2e-46 159.6 26.3 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|389846597|ref|YP_006348836.1| - 1.6e-20 73.4 0.3 9.1e-10 38.8 0.2 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|389846597|ref|YP_006348836.1| - 2.1e-19 69.6 0.0 2e-08 34.2 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|389846597|ref|YP_006348836.1| - 2e-17 63.7 0.0 4.4e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|389846597|ref|YP_006348836.1| - 6e-16 58.6 0.0 1.3e-07 31.8 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|389846597|ref|YP_006348836.1| - 1.9e-13 50.1 0.1 9.8e-06 25.5 0.1 3.0 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|389846597|ref|YP_006348836.1| - 1.1e-11 44.6 1.4 1.1e-11 44.6 1.4 2.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|389846597|ref|YP_006348836.1| - 3e-07 30.6 0.1 0.00081 19.5 0.1 4.0 3 1 0 3 3 3 1 PAS fold PAS_3 PF08447.12 gi|389846597|ref|YP_006348836.1| - 0.00064 20.0 0.0 0.016 15.5 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.6 gi|389846597|ref|YP_006348836.1| - 0.017 15.7 0.0 0.041 14.5 0.0 1.7 1 0 0 1 1 1 0 PAS domain HATPase_c_2 PF13581.6 gi|389846597|ref|YP_006348836.1| - 0.12 12.3 0.3 0.36 10.8 0.1 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain tRNA-synt_1e PF01406.19 gi|389846598|ref|YP_006348837.1| - 4.7e-107 357.8 0.2 2.9e-106 355.2 0.2 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|389846598|ref|YP_006348837.1| - 1.5e-13 51.0 0.2 4.4e-13 49.5 0.2 1.8 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.11 gi|389846598|ref|YP_006348837.1| - 8.9e-09 34.6 0.1 0.00043 19.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|389846598|ref|YP_006348837.1| - 1e-07 31.2 0.0 0.00026 20.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|389846598|ref|YP_006348837.1| - 4.3e-05 22.0 0.0 0.00021 19.7 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) UVR PF02151.19 gi|389846598|ref|YP_006348837.1| - 0.0058 16.3 0.1 0.031 14.0 0.1 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif FTO_CTD PF12934.7 gi|389846598|ref|YP_006348837.1| - 0.0075 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 FTO C-terminal domain AP_endonuc_2 PF01261.24 gi|389846598|ref|YP_006348837.1| - 0.015 14.8 1.3 0.19 11.1 0.7 2.4 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel tRNA-synt_1c PF00749.21 gi|389846598|ref|YP_006348837.1| - 0.043 12.7 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain PEP-utilisers_N PF05524.13 gi|389846598|ref|YP_006348837.1| - 3 8.0 6.5 43 4.3 6.5 2.6 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal CbiX PF01903.17 gi|389846600|ref|YP_006348839.1| - 5e-43 145.8 0.1 9.1e-21 74.2 0.0 2.4 2 1 0 2 2 2 2 CbiX CbiK PF06180.11 gi|389846600|ref|YP_006348839.1| - 8.9e-08 31.8 0.0 0.0091 15.3 0.1 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) DR2241 PF18069.1 gi|389846601|ref|YP_006348840.1| - 4.2e-45 152.2 1.0 4.2e-45 152.2 1.0 2.1 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|389846601|ref|YP_006348840.1| - 7.1e-27 93.7 1.5 1.2e-26 92.9 0.6 1.9 2 0 0 2 2 2 1 4Fe-4S iron-sulfur cluster binding domain Trm112p PF03966.16 gi|389846603|ref|YP_006348842.1| - 0.00015 22.3 0.1 0.00038 21.0 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.21 gi|389846604|ref|YP_006348843.1| - 9.1e-156 519.0 0.0 1e-155 518.8 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_12 PF08461.10 gi|389846605|ref|YP_006348844.1| - 0.0028 17.6 0.1 0.0059 16.5 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|389846605|ref|YP_006348844.1| - 0.024 14.5 0.1 0.059 13.2 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|389846605|ref|YP_006348844.1| - 0.029 14.3 0.1 0.058 13.3 0.0 1.6 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Pup PF05639.11 gi|389846605|ref|YP_006348844.1| - 0.029 15.3 0.7 0.047 14.6 0.7 1.5 1 0 0 1 1 1 0 Pup-like protein TrmB PF01978.19 gi|389846605|ref|YP_006348844.1| - 0.046 13.6 0.2 0.085 12.8 0.1 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB SlyX PF04102.12 gi|389846605|ref|YP_006348844.1| - 0.053 14.2 0.4 6.8 7.4 0.0 2.3 2 0 0 2 2 2 0 SlyX CLZ PF16526.5 gi|389846605|ref|YP_006348844.1| - 0.2 12.1 6.2 1.3 9.4 1.3 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels EMP24_GP25L PF01105.24 gi|389846605|ref|YP_006348844.1| - 1.7 8.6 4.3 0.61 10.0 0.4 1.8 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Cep57_CLD_2 PF14197.6 gi|662859413|ref|YP_006348846.2| - 0.00099 19.1 12.3 0.0022 18.0 12.3 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.9 gi|662859413|ref|YP_006348846.2| - 0.0051 16.8 6.0 0.0092 16.0 6.0 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1192 PF06698.11 gi|662859413|ref|YP_006348846.2| - 0.012 15.7 4.0 0.012 15.7 4.0 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Filament PF00038.21 gi|662859413|ref|YP_006348846.2| - 0.014 15.0 8.4 0.02 14.5 8.4 1.2 1 0 0 1 1 1 0 Intermediate filament protein bZIP_2 PF07716.15 gi|662859413|ref|YP_006348846.2| - 0.015 15.4 11.4 0.062 13.4 10.4 2.3 1 1 1 2 2 2 0 Basic region leucine zipper Rootletin PF15035.6 gi|662859413|ref|YP_006348846.2| - 0.028 14.4 9.7 0.052 13.6 9.7 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF848 PF05852.11 gi|662859413|ref|YP_006348846.2| - 0.034 14.3 3.7 0.066 13.3 3.7 1.4 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF3450 PF11932.8 gi|662859413|ref|YP_006348846.2| - 0.037 13.3 3.3 0.068 12.5 3.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) bZIP_1 PF00170.21 gi|662859413|ref|YP_006348846.2| - 0.13 12.4 7.7 0.28 11.3 7.1 1.9 1 1 0 1 1 1 0 bZIP transcription factor DUF2203 PF09969.9 gi|662859413|ref|YP_006348846.2| - 0.23 12.2 2.2 0.76 10.5 2.2 1.9 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) IFT20 PF14931.6 gi|662859413|ref|YP_006348846.2| - 0.27 11.4 4.0 0.63 10.2 4.0 1.6 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 ABC_tran_CTD PF16326.5 gi|662859413|ref|YP_006348846.2| - 0.28 11.5 7.7 0.65 10.3 2.0 2.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain HOOK PF05622.12 gi|662859413|ref|YP_006348846.2| - 0.28 9.3 10.6 0.38 8.8 8.9 1.7 1 1 1 2 2 2 0 HOOK protein DUF641 PF04859.12 gi|662859413|ref|YP_006348846.2| - 0.33 11.3 4.3 0.67 10.3 4.3 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Spc7 PF08317.11 gi|662859413|ref|YP_006348846.2| - 0.38 9.6 12.2 0.58 9.0 12.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein APG6_N PF17675.1 gi|662859413|ref|YP_006348846.2| - 0.41 11.2 13.4 1.2 9.7 13.4 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region JIP_LZII PF16471.5 gi|662859413|ref|YP_006348846.2| - 0.64 10.2 6.3 1.1 9.4 5.2 2.0 1 1 0 1 1 1 0 JNK-interacting protein leucine zipper II AAA_13 PF13166.6 gi|662859413|ref|YP_006348846.2| - 0.72 8.4 3.3 1.1 7.8 3.3 1.2 1 0 0 1 1 1 0 AAA domain XhlA PF10779.9 gi|662859413|ref|YP_006348846.2| - 0.75 10.0 3.2 1.5 9.1 3.2 1.5 1 0 0 1 1 1 0 Haemolysin XhlA FlaC_arch PF05377.11 gi|662859413|ref|YP_006348846.2| - 0.81 10.1 3.2 1.9 8.9 0.5 2.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.7 gi|662859413|ref|YP_006348846.2| - 1.1 9.4 15.4 2.2 8.4 15.4 1.4 1 0 0 1 1 1 0 Tropomyosin like kleA_kleC PF17383.2 gi|662859413|ref|YP_006348846.2| - 1.5 9.2 6.3 4 7.8 6.3 1.7 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A GrpE PF01025.19 gi|662859413|ref|YP_006348846.2| - 1.9 8.2 6.6 3.9 7.1 6.0 1.8 1 1 0 1 1 1 0 GrpE EMP24_GP25L PF01105.24 gi|662859413|ref|YP_006348846.2| - 2.1 8.3 3.5 4.1 7.3 3.5 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Spc24 PF08286.11 gi|662859413|ref|YP_006348846.2| - 2.4 8.5 6.1 72 3.7 6.1 2.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 UPF0242 PF06785.11 gi|662859413|ref|YP_006348846.2| - 2.9 7.9 8.5 5.3 7.1 8.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 gi|662859413|ref|YP_006348846.2| - 4.1 7.2 7.8 39 4.1 7.8 2.3 1 1 0 1 1 1 0 Septum formation initiator YabA PF06156.13 gi|662859413|ref|YP_006348846.2| - 6.5 7.5 5.0 39 4.9 2.7 2.8 2 1 1 3 3 3 0 Initiation control protein YabA TMF_DNA_bd PF12329.8 gi|662859413|ref|YP_006348846.2| - 8.1 6.5 10.3 1.5 8.9 6.2 1.9 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding Methyltransf_12 PF08242.12 gi|389846608|ref|YP_006348847.1| - 0.00068 20.3 0.0 0.0017 19.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_28 PF02636.17 gi|389846608|ref|YP_006348847.1| - 0.001 18.8 0.0 0.0018 18.0 0.0 1.4 2 0 0 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|389846608|ref|YP_006348847.1| - 0.0011 19.6 0.1 0.021 15.5 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846608|ref|YP_006348847.1| - 0.032 14.9 0.1 0.16 12.6 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846608|ref|YP_006348847.1| - 0.086 12.6 0.0 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846608|ref|YP_006348847.1| - 0.095 12.5 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CDP-OH_P_transf PF01066.21 gi|389846609|ref|YP_006348848.1| - 8.9e-08 32.8 2.3 4.1e-07 30.7 2.3 2.3 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase GCSF PF16647.5 gi|389846610|ref|YP_006348849.1| - 0.071 13.0 0.0 0.085 12.7 0.0 1.1 1 0 0 1 1 1 0 Granulocyte colony-stimulating factor DUF4203 PF13886.6 gi|389846610|ref|YP_006348849.1| - 2.5 7.7 17.7 55 3.3 17.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) OATP PF03137.20 gi|389846610|ref|YP_006348849.1| - 2.5 6.3 4.7 2.1 6.6 4.0 1.2 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF4152 PF13680.6 gi|389846612|ref|YP_006348851.1| - 0.056 12.8 0.1 0.065 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4152) DUF202 PF02656.15 gi|389846612|ref|YP_006348851.1| - 1.2 9.6 6.5 1.5 9.3 6.0 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) TrkA_N PF02254.18 gi|389846613|ref|YP_006348852.1| - 9.4e-39 132.3 7.8 3.8e-19 69.1 0.1 3.1 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|389846613|ref|YP_006348852.1| - 6.4e-22 77.2 0.6 4.9e-10 39.1 0.1 2.7 2 0 0 2 2 2 2 TrkA-C domain FAD_binding_3 PF01494.19 gi|389846613|ref|YP_006348852.1| - 4.8e-05 22.8 0.4 9e-05 21.9 0.4 1.5 1 0 0 1 1 1 1 FAD binding domain Ion_trans_2 PF07885.16 gi|389846613|ref|YP_006348852.1| - 0.00026 20.9 4.0 0.00052 19.9 4.0 1.5 1 0 0 1 1 1 1 Ion channel ThiF PF00899.21 gi|389846613|ref|YP_006348852.1| - 0.002 17.5 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.6 gi|389846613|ref|YP_006348852.1| - 0.0043 17.5 2.0 0.12 12.8 0.6 2.9 2 1 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|389846613|ref|YP_006348852.1| - 0.038 13.4 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|389846613|ref|YP_006348852.1| - 0.045 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SMC_hinge PF06470.13 gi|389846613|ref|YP_006348852.1| - 0.13 12.6 1.0 5.2 7.4 0.1 2.5 2 0 0 2 2 2 0 SMC proteins Flexible Hinge Domain COX3 PF00510.18 gi|389846614|ref|YP_006348853.1| - 3e-37 128.9 19.4 4.6e-37 128.3 19.4 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III DHHC PF01529.20 gi|389846614|ref|YP_006348853.1| - 1.3 9.1 7.1 3.1 7.9 2.8 2.7 2 1 0 2 2 2 0 DHHC palmitoyltransferase SQS_PSY PF00494.19 gi|389846615|ref|YP_006348854.1| - 3.3e-51 174.3 0.2 4.3e-51 173.9 0.2 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Acyl-CoA_dh_1 PF00441.24 gi|389846616|ref|YP_006348855.1| - 3.9e-48 163.5 0.7 5.9e-48 162.9 0.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|389846616|ref|YP_006348855.1| - 3e-36 124.5 0.2 1.2e-35 122.6 0.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389846616|ref|YP_006348855.1| - 1.1e-25 89.7 0.0 2e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|389846616|ref|YP_006348855.1| - 2.3e-24 86.2 0.8 3.4e-24 85.6 0.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF3829 PF12889.7 gi|389846616|ref|YP_006348855.1| - 0.013 15.0 0.5 0.02 14.4 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) PadR PF03551.14 gi|389846617|ref|YP_006348856.1| - 0.00027 20.9 0.2 0.00055 19.8 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|389846617|ref|YP_006348856.1| - 0.0058 16.7 0.1 0.0093 16.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|389846617|ref|YP_006348856.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SelB-wing_2 PF09106.11 gi|389846617|ref|YP_006348856.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix CDP-OH_P_transf PF01066.21 gi|389846619|ref|YP_006348858.1| - 4.1e-09 37.1 2.5 4.1e-09 37.1 2.5 2.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.20 gi|389846620|ref|YP_006348859.1| - 1.5e-15 57.4 0.0 3.1e-15 56.4 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389846620|ref|YP_006348859.1| - 0.00014 21.9 0.0 0.12 12.5 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain UCR_Fe-S_N PF10399.9 gi|389846620|ref|YP_006348859.1| - 0.053 12.9 0.6 0.11 11.8 0.6 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ribosomal_S3Ae PF01015.18 gi|389846621|ref|YP_006348860.1| - 1.5e-55 188.0 0.1 1.8e-55 187.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ProQ_C PF17516.2 gi|389846621|ref|YP_006348860.1| - 0.003 16.9 0.1 0.0069 15.8 0.1 1.6 1 0 0 1 1 1 1 ProQ C-terminal domain Ribul_P_3_epim PF00834.19 gi|389846622|ref|YP_006348861.1| - 0.045 13.1 0.2 0.046 13.1 0.2 1.1 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family HTH_Tnp_1 PF01527.20 gi|389846623|ref|YP_006348862.1| - 0.066 13.5 0.1 0.34 11.3 0.0 2.3 2 0 0 2 2 2 0 Transposase DUF3035 PF11233.8 gi|389846623|ref|YP_006348862.1| - 0.081 13.2 1.9 2.8 8.2 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3035) Ribosomal_S13_N PF08069.12 gi|662859414|ref|YP_006348863.2| - 1.4e-22 79.5 0.0 2.3e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|662859414|ref|YP_006348863.2| - 1.1e-14 54.3 0.7 1.8e-14 53.7 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF4298 PF14131.6 gi|662859414|ref|YP_006348863.2| - 0.095 12.7 1.3 0.21 11.6 1.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) dCache_2 PF08269.11 gi|662859414|ref|YP_006348863.2| - 0.12 11.5 1.2 0.16 11.1 1.2 1.1 1 0 0 1 1 1 0 Cache domain DUF5624 PF18538.1 gi|662859414|ref|YP_006348863.2| - 0.15 12.1 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5624) Pilin_N PF07790.11 gi|389846628|ref|YP_006348867.1| - 0.05 14.5 0.7 0.09 13.7 0.7 1.6 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal T2SSF PF00482.23 gi|389846632|ref|YP_006348871.1| - 8.6e-27 93.6 14.8 1.1e-14 54.4 1.2 3.5 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F E1-E2_ATPase PF00122.20 gi|389846632|ref|YP_006348871.1| - 3.9 7.0 10.5 3.5 7.1 0.1 3.7 3 1 0 3 3 3 0 E1-E2 ATPase T2SSE PF00437.20 gi|389846633|ref|YP_006348872.1| - 7.6e-42 143.2 0.0 1.2e-41 142.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|389846633|ref|YP_006348872.1| - 0.0039 16.9 0.1 0.0091 15.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Putative_PNPOx PF01243.20 gi|389846634|ref|YP_006348873.1| - 2.2e-14 53.4 0.0 2.8e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|389846634|ref|YP_006348873.1| - 0.0016 18.0 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like MttA_Hcf106 PF02416.16 gi|389846635|ref|YP_006348874.1| - 1.6e-14 53.0 0.0 1.9e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|389846635|ref|YP_006348874.1| - 0.036 15.0 0.0 0.042 14.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) CAP18_C PF12153.8 gi|389846635|ref|YP_006348874.1| - 0.17 11.7 2.3 0.28 11.1 2.3 1.3 1 0 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) AhpC-TSA PF00578.21 gi|389846636|ref|YP_006348875.1| - 2e-31 108.5 0.0 2.4e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|389846636|ref|YP_006348875.1| - 7.2e-23 80.9 0.1 8.8e-23 80.7 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|389846636|ref|YP_006348875.1| - 0.00072 19.7 0.0 0.014 15.5 0.0 2.1 1 1 0 2 2 2 1 AhpC/TSA antioxidant enzyme HD PF01966.22 gi|389846637|ref|YP_006348876.1| - 3.5e-09 36.9 3.8 6.4e-09 36.1 3.8 1.5 1 0 0 1 1 1 1 HD domain MS_channel PF00924.18 gi|389846638|ref|YP_006348877.1| - 1.6e-50 171.5 0.1 1.6e-50 171.5 0.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel Mntp PF02659.15 gi|389846638|ref|YP_006348877.1| - 0.043 13.6 5.3 0.064 13.0 5.3 1.2 1 0 0 1 1 1 0 Putative manganese efflux pump TM_helix PF05552.12 gi|389846638|ref|YP_006348877.1| - 0.11 12.4 0.5 0.11 12.4 0.5 3.3 2 1 1 3 3 3 0 Conserved TM helix NSP10 PF09401.10 gi|389846638|ref|YP_006348877.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 RNA synthesis protein NSP10 SPC12 PF06645.13 gi|389846638|ref|YP_006348877.1| - 3.4 7.8 15.6 1.1 9.4 1.1 3.2 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) CRS1_YhbY PF01985.21 gi|389846639|ref|YP_006348878.1| - 1.8e-12 47.2 0.0 2e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|662859416|ref|YP_006348879.2| - 2.9e-12 46.7 0.1 3.4e-12 46.5 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Myosin_N PF02736.19 gi|662859416|ref|YP_006348879.2| - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Glyco_trans_1_4 PF13692.6 gi|389846641|ref|YP_006348880.1| - 2.6e-17 63.5 0.0 1.6e-15 57.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|389846641|ref|YP_006348880.1| - 2.8e-17 62.8 0.0 8e-16 58.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389846641|ref|YP_006348880.1| - 8.5e-15 55.2 0.0 1.8e-14 54.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|389846641|ref|YP_006348880.1| - 1.1e-11 45.0 0.1 2.5e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|389846641|ref|YP_006348880.1| - 3.5e-09 37.3 0.2 1.7e-08 35.0 0.2 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|389846642|ref|YP_006348881.1| - 7.2e-33 113.5 0.0 1.4e-32 112.6 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389846642|ref|YP_006348881.1| - 1.2e-31 110.0 0.4 2.4e-30 105.8 0.1 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|389846642|ref|YP_006348881.1| - 4.5e-24 85.4 0.0 1.1e-22 80.9 0.0 2.6 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|389846642|ref|YP_006348881.1| - 8.8e-22 78.3 7.6 3.5e-19 69.8 1.5 2.2 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|389846642|ref|YP_006348881.1| - 1.7e-06 28.3 0.0 5.6e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|389846642|ref|YP_006348881.1| - 0.0032 17.5 0.0 0.0063 16.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like DUF2046 PF09755.9 gi|389846643|ref|YP_006348882.1| - 0.016 14.5 1.5 0.04 13.1 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein H4 (DUF2046) DUF4510 PF14971.6 gi|389846643|ref|YP_006348882.1| - 0.023 15.1 0.2 0.023 15.1 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) betaPIX_CC PF16523.5 gi|389846643|ref|YP_006348882.1| - 0.11 12.4 0.1 0.11 12.4 0.1 2.0 2 0 0 2 2 2 0 betaPIX coiled coil NEMO PF11577.8 gi|389846643|ref|YP_006348882.1| - 0.11 12.5 10.0 1.6 8.8 5.6 2.1 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO DUF4140 PF13600.6 gi|389846643|ref|YP_006348882.1| - 1.9 9.0 6.6 1.5 9.3 0.2 2.0 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF2797 PF10977.8 gi|389846644|ref|YP_006348883.1| - 1.1e-30 107.3 5.5 5.4e-28 98.4 5.5 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) Miff PF05644.11 gi|389846644|ref|YP_006348883.1| - 0.24 11.0 0.0 0.34 10.5 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff Epimerase PF01370.21 gi|389846645|ref|YP_006348884.1| - 1e-47 162.6 0.0 1.2e-47 162.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389846645|ref|YP_006348884.1| - 1.2e-35 123.5 0.1 3.1e-35 122.1 0.1 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|389846645|ref|YP_006348884.1| - 2.6e-19 69.4 0.0 3.3e-19 69.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|389846645|ref|YP_006348884.1| - 1e-12 47.7 0.0 1.5e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|389846645|ref|YP_006348884.1| - 3.2e-12 46.7 0.0 5.2e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|389846645|ref|YP_006348884.1| - 3.8e-12 45.9 0.1 4.6e-11 42.4 0.1 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|389846645|ref|YP_006348884.1| - 1.5e-08 34.2 0.1 1.3e-06 27.8 0.0 2.8 1 1 1 2 2 2 1 Male sterility protein TrkA_N PF02254.18 gi|389846645|ref|YP_006348884.1| - 3.9e-06 27.1 0.1 7.8e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 gi|389846645|ref|YP_006348884.1| - 7.6e-05 22.4 0.1 0.00038 20.1 0.1 2.0 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|389846645|ref|YP_006348884.1| - 8.5e-05 22.1 0.2 0.0011 18.4 0.2 2.4 1 1 0 1 1 1 1 short chain dehydrogenase Ldh_1_N PF00056.23 gi|389846645|ref|YP_006348884.1| - 0.0033 17.5 0.0 0.0081 16.3 0.0 1.6 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|389846645|ref|YP_006348884.1| - 0.024 14.9 0.1 0.063 13.5 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Hpr_kinase_C PF07475.12 gi|389846645|ref|YP_006348884.1| - 0.088 12.3 0.1 0.23 11.0 0.1 1.6 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain DUF1188 PF06690.11 gi|389846645|ref|YP_006348884.1| - 0.095 12.2 0.1 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) adh_short_C2 PF13561.6 gi|389846645|ref|YP_006348884.1| - 0.17 11.4 0.1 0.31 10.5 0.1 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DUF2524 PF10732.9 gi|389846645|ref|YP_006348884.1| - 0.57 10.5 2.1 7.1 7.0 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2524) adh_short PF00106.25 gi|662859417|ref|YP_006348885.2| - 3.6e-28 98.3 0.0 1.2e-27 96.7 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|662859417|ref|YP_006348885.2| - 4.7e-21 75.4 0.0 1e-20 74.3 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|662859417|ref|YP_006348885.2| - 0.00042 20.3 0.1 0.00066 19.6 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|662859417|ref|YP_006348885.2| - 0.0024 17.4 0.0 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF3313 PF11769.8 gi|662859417|ref|YP_006348885.2| - 0.041 13.7 1.2 0.063 13.1 0.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3313) Trm56 PF01994.16 gi|389846647|ref|YP_006348886.1| - 1.2e-47 160.8 0.0 1.6e-47 160.3 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SIS_2 PF13580.6 gi|389846647|ref|YP_006348886.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 SIS domain TFIIE_alpha PF02002.17 gi|662859418|ref|YP_006348887.2| - 4.6e-20 71.4 0.5 8e-20 70.7 0.1 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|662859418|ref|YP_006348887.2| - 0.014 15.5 0.5 0.025 14.7 0.1 1.7 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_20 PF12840.7 gi|662859418|ref|YP_006348887.2| - 0.24 11.5 2.3 0.25 11.4 0.1 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain DUF2110 PF09883.9 gi|389846649|ref|YP_006348888.1| - 5.7e-96 320.4 0.0 6.4e-96 320.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) MoCF_biosynth PF00994.24 gi|389846651|ref|YP_006348890.1| - 2.5e-36 124.5 0.5 2.5e-36 124.5 0.5 1.5 2 0 0 2 2 2 1 Probable molybdopterin binding domain NAD_kinase PF01513.21 gi|389846653|ref|YP_006348892.1| - 1.1e-51 175.8 0.3 1.2e-51 175.6 0.3 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|389846653|ref|YP_006348892.1| - 3e-06 26.9 0.8 3e-06 26.9 0.8 2.6 2 1 1 3 3 3 1 Diacylglycerol kinase catalytic domain Peripla_BP_6 PF13458.6 gi|389846653|ref|YP_006348892.1| - 0.00023 20.9 0.8 0.00068 19.4 0.3 1.9 2 0 0 2 2 2 1 Periplasmic binding protein DRTGG PF07085.12 gi|389846653|ref|YP_006348892.1| - 0.065 13.0 0.1 1.1 9.1 0.0 2.5 3 0 0 3 3 3 0 DRTGG domain PhoU PF01895.19 gi|389846654|ref|YP_006348893.1| - 3.5e-15 56.2 4.8 1.1e-12 48.3 0.0 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|389846654|ref|YP_006348893.1| - 9.6e-09 35.0 0.0 1.8e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin LEA_2 PF03168.13 gi|389846656|ref|YP_006348895.1| - 4.6e-17 62.4 3.4 6.8e-08 33.0 0.0 2.8 3 0 0 3 3 3 2 Late embryogenesis abundant protein DUF4769 PF15992.5 gi|389846656|ref|YP_006348895.1| - 0.029 14.2 1.7 0.046 13.5 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4769) SOG2 PF10428.9 gi|389846656|ref|YP_006348895.1| - 0.87 8.7 15.8 1.1 8.3 15.8 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein RIFIN PF02009.16 gi|389846656|ref|YP_006348895.1| - 1.9 8.3 9.5 2.9 7.7 9.5 1.3 1 0 0 1 1 1 0 Rifin CPSF100_C PF13299.6 gi|389846656|ref|YP_006348895.1| - 5.6 7.1 7.0 9.4 6.4 7.0 1.4 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal FaeA PF04703.12 gi|389846658|ref|YP_006348897.1| - 0.0002 21.7 0.1 0.00023 21.5 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.16 gi|389846658|ref|YP_006348897.1| - 0.0074 16.0 0.0 0.0096 15.7 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain Put_DNA-bind_N PF06971.13 gi|389846658|ref|YP_006348897.1| - 0.011 15.7 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Polyketide_cyc2 PF10604.9 gi|389846659|ref|YP_006348898.1| - 7.1e-16 58.8 1.9 8.2e-16 58.6 1.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|389846659|ref|YP_006348898.1| - 4.6e-05 23.2 0.0 5.8e-05 22.9 0.0 1.2 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|389846659|ref|YP_006348898.1| - 0.0047 17.1 0.1 0.0061 16.8 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3833 PF12915.7 gi|389846659|ref|YP_006348898.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3833) Aldedh PF00171.22 gi|389846660|ref|YP_006348899.1| - 2.7e-144 481.1 0.0 3.4e-144 480.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|389846660|ref|YP_006348899.1| - 0.04 13.0 0.0 0.077 12.0 0.0 1.4 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) HTH_10 PF04967.12 gi|662859420|ref|YP_006348900.2| - 2.3e-19 68.9 0.2 3.4e-19 68.4 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|662859420|ref|YP_006348900.2| - 0.00012 22.2 0.1 0.00021 21.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|662859420|ref|YP_006348900.2| - 0.00054 19.6 1.3 0.0051 16.5 1.3 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|662859420|ref|YP_006348900.2| - 0.0011 18.5 0.1 0.0023 17.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|662859420|ref|YP_006348900.2| - 0.0061 16.4 0.1 0.016 15.0 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|662859420|ref|YP_006348900.2| - 0.0061 16.4 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|662859420|ref|YP_006348900.2| - 0.007 16.4 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 gi|662859420|ref|YP_006348900.2| - 0.0082 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain TetR_N PF00440.23 gi|662859420|ref|YP_006348900.2| - 0.036 13.9 0.0 0.086 12.6 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_50 PF18024.1 gi|662859420|ref|YP_006348900.2| - 0.039 13.6 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|662859420|ref|YP_006348900.2| - 0.085 12.4 0.6 0.23 11.0 0.6 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|662859420|ref|YP_006348900.2| - 0.11 12.4 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 HTH domain TubC_N PF18563.1 gi|662859420|ref|YP_006348900.2| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 TubC N-terminal docking domain Pro_dh PF01619.18 gi|389846662|ref|YP_006348901.1| - 1.7e-27 96.8 0.0 2.4e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Proline dehydrogenase AP_endonuc_2 PF01261.24 gi|389846662|ref|YP_006348901.1| - 0.008 15.6 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Peripla_BP_6 PF13458.6 gi|389846663|ref|YP_006348902.1| - 1e-39 137.1 8.8 1.3e-39 136.8 8.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|389846663|ref|YP_006348902.1| - 6.8e-30 104.4 0.0 8.7e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|389846663|ref|YP_006348902.1| - 9.2e-06 24.9 1.9 0.00043 19.4 0.2 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain LppC PF04348.13 gi|389846663|ref|YP_006348902.1| - 0.096 11.5 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 LppC putative lipoprotein BPD_transp_2 PF02653.16 gi|389846664|ref|YP_006348903.1| - 1.2e-42 146.0 38.4 1.4e-42 145.7 38.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF997 PF06196.12 gi|389846664|ref|YP_006348903.1| - 4.7e-05 23.3 0.3 4.7e-05 23.3 0.3 2.9 5 0 0 5 5 5 1 Protein of unknown function (DUF997) DUF2304 PF10066.9 gi|389846664|ref|YP_006348903.1| - 0.12 12.6 0.0 0.12 12.6 0.0 4.1 5 1 0 5 5 5 0 Uncharacterized conserved protein (DUF2304) HTH_8 PF02954.19 gi|389846664|ref|YP_006348903.1| - 2.8 7.8 4.1 0.88 9.4 1.1 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family BPD_transp_2 PF02653.16 gi|389846665|ref|YP_006348904.1| - 6.8e-55 186.1 30.2 6.8e-55 186.1 30.2 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|389846665|ref|YP_006348904.1| - 0.12 12.2 0.0 0.32 10.7 0.0 1.8 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 ABC_tran PF00005.27 gi|389846666|ref|YP_006348905.1| - 2e-31 109.3 0.0 2.9e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389846666|ref|YP_006348905.1| - 3e-11 43.7 1.6 0.00012 22.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|389846666|ref|YP_006348905.1| - 1.1e-08 34.8 0.0 2e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|389846666|ref|YP_006348905.1| - 9.8e-06 25.2 0.1 5.1e-05 22.8 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|389846666|ref|YP_006348905.1| - 0.0002 21.9 0.6 0.00033 21.2 0.2 1.5 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|389846666|ref|YP_006348905.1| - 0.00052 19.8 0.0 0.017 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|389846666|ref|YP_006348905.1| - 0.0013 18.4 0.1 0.0025 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|389846666|ref|YP_006348905.1| - 0.01 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|389846666|ref|YP_006348905.1| - 0.067 13.3 0.1 0.13 12.4 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|389846666|ref|YP_006348905.1| - 0.18 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_ATPase PF09818.9 gi|389846666|ref|YP_006348905.1| - 0.23 10.2 0.3 0.8 8.4 0.1 1.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|389846667|ref|YP_006348906.1| - 5.3e-32 111.2 0.0 7.1e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389846667|ref|YP_006348906.1| - 6.9e-12 45.8 0.3 7.6e-05 22.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|389846667|ref|YP_006348906.1| - 7.4e-05 22.6 0.0 0.001 18.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|389846667|ref|YP_006348906.1| - 0.0001 21.9 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|389846667|ref|YP_006348906.1| - 0.00013 22.5 0.0 0.00023 21.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389846667|ref|YP_006348906.1| - 0.00024 20.8 0.0 0.00043 20.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|389846667|ref|YP_006348906.1| - 0.00053 20.3 0.1 0.0073 16.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|389846667|ref|YP_006348906.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389846667|ref|YP_006348906.1| - 0.0018 18.2 0.0 0.0047 16.9 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|389846667|ref|YP_006348906.1| - 0.005 17.2 0.0 0.0071 16.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|389846667|ref|YP_006348906.1| - 0.0081 16.6 0.0 0.053 13.9 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|389846667|ref|YP_006348906.1| - 0.014 15.1 0.0 0.028 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|389846667|ref|YP_006348906.1| - 0.017 15.6 0.1 0.13 12.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|389846667|ref|YP_006348906.1| - 0.03 14.3 0.0 0.047 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|389846667|ref|YP_006348906.1| - 0.071 13.0 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|389846667|ref|YP_006348906.1| - 0.081 12.8 0.2 0.83 9.5 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|389846667|ref|YP_006348906.1| - 0.091 12.9 0.1 0.17 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|389846667|ref|YP_006348906.1| - 0.14 11.9 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|389846667|ref|YP_006348906.1| - 0.14 12.0 0.0 0.34 10.8 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|389846667|ref|YP_006348906.1| - 0.17 11.9 0.0 0.48 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain RIO1 PF01163.22 gi|389846668|ref|YP_006348907.1| - 1.4e-08 34.5 0.0 2.3e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|389846668|ref|YP_006348907.1| - 3.6e-07 30.4 2.0 0.002 18.1 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|389846668|ref|YP_006348907.1| - 1.6e-05 24.3 0.1 3.2e-05 23.4 0.1 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|389846668|ref|YP_006348907.1| - 0.00068 19.1 0.0 0.00092 18.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|389846668|ref|YP_006348907.1| - 0.022 14.0 0.0 0.028 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein tyrosine kinase Kinase-PolyVal PF18762.1 gi|389846668|ref|YP_006348907.1| - 0.036 14.0 0.2 0.056 13.4 0.2 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins DUF3085 PF11284.8 gi|389846668|ref|YP_006348907.1| - 0.16 12.3 0.1 0.31 11.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3085) Usp PF00582.26 gi|389846669|ref|YP_006348908.1| - 2.4e-39 135.1 3.6 2.7e-39 134.9 3.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Peripla_BP_6 PF13458.6 gi|389846669|ref|YP_006348908.1| - 0.11 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein DAGK_cat PF00781.24 gi|389846669|ref|YP_006348908.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Adhesin_P1_N PF18652.1 gi|389846669|ref|YP_006348908.1| - 0.78 9.8 2.7 0.54 10.3 0.2 1.9 2 0 0 2 2 2 0 Adhesin P1 N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|389846670|ref|YP_006348909.1| - 1.9e-47 161.2 0.4 3.6e-47 160.3 0.3 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|389846670|ref|YP_006348909.1| - 1.6e-36 125.4 0.1 3.3e-36 124.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389846670|ref|YP_006348909.1| - 7.7e-24 83.7 0.0 1.2e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|389846670|ref|YP_006348909.1| - 1.6e-14 54.3 0.8 2.2e-14 53.9 0.2 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|389846670|ref|YP_006348909.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Arch_fla_DE PF04659.13 gi|389846671|ref|YP_006348910.1| - 1.2e-21 76.4 0.0 1.6e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein HisKA_7TM PF16927.5 gi|389846672|ref|YP_006348911.1| - 4.6e-42 144.5 18.8 6e-42 144.2 18.8 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|389846672|ref|YP_006348911.1| - 7.1e-24 84.2 4.5 2.9e-13 50.0 0.2 2.4 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|389846672|ref|YP_006348911.1| - 4.3e-22 78.3 0.1 1.5e-10 41.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|389846672|ref|YP_006348911.1| - 6.9e-18 64.7 0.0 4.3e-17 62.2 0.0 2.4 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|389846672|ref|YP_006348911.1| - 9.7e-11 41.9 0.0 3.2e-06 27.3 0.0 2.7 1 1 1 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|389846672|ref|YP_006348911.1| - 3.6e-10 40.3 0.0 7.5e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|389846672|ref|YP_006348911.1| - 1.1e-05 25.3 0.1 0.067 13.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|389846672|ref|YP_006348911.1| - 3.8e-05 23.7 0.0 0.00011 22.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|389846672|ref|YP_006348911.1| - 0.00025 21.0 1.4 0.00066 19.7 1.4 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|389846672|ref|YP_006348911.1| - 0.0013 18.9 0.2 1.3 9.3 0.1 3.7 2 2 0 2 2 2 1 PAS fold PAS_11 PF14598.6 gi|389846672|ref|YP_006348911.1| - 0.0017 18.4 0.0 0.0035 17.4 0.0 1.4 1 0 0 1 1 1 1 PAS domain HisKA_4TM PF16926.5 gi|389846672|ref|YP_006348911.1| - 0.0029 17.2 1.0 0.0045 16.6 0.1 1.7 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|389846672|ref|YP_006348911.1| - 0.016 15.0 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|389846672|ref|YP_006348911.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 GHKL domain BcrAD_BadFG PF01869.20 gi|389846673|ref|YP_006348912.1| - 0.0026 17.3 0.0 0.045 13.2 0.0 2.3 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Actin PF00022.19 gi|389846673|ref|YP_006348912.1| - 0.098 11.2 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Actin HSP70 PF00012.20 gi|389846673|ref|YP_006348912.1| - 0.17 10.0 0.0 0.36 9.0 0.0 1.5 2 0 0 2 2 2 0 Hsp70 protein Arch_fla_DE PF04659.13 gi|389846674|ref|YP_006348913.1| - 5.5e-27 93.5 0.0 7.6e-27 93.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein DUF835 PF05763.12 gi|389846674|ref|YP_006348913.1| - 0.073 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF835) CheD PF03975.13 gi|662859421|ref|YP_006348914.2| - 4.7e-30 103.9 0.0 6.3e-30 103.5 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Cu-oxidase_4 PF02578.15 gi|662859421|ref|YP_006348914.2| - 0.073 12.7 0.1 0.075 12.6 0.1 1.4 1 1 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase CheC PF04509.12 gi|389846676|ref|YP_006348915.1| - 1.5e-25 88.8 0.1 1.7e-13 50.2 0.0 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|389846676|ref|YP_006348915.1| - 4.8e-22 77.9 0.0 8.2e-10 38.7 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Response_reg PF00072.24 gi|662859422|ref|YP_006348916.2| - 7.1e-31 106.7 0.1 8.1e-31 106.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ADH_zinc_N PF00107.26 gi|662859422|ref|YP_006348916.2| - 0.015 15.2 0.2 0.33 10.9 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase HTH_20 PF12840.7 gi|389846679|ref|YP_006348918.1| - 9.1e-09 35.3 0.3 1.3e-08 34.7 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|389846679|ref|YP_006348918.1| - 0.00016 21.5 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|389846679|ref|YP_006348918.1| - 0.001 18.6 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389846679|ref|YP_006348918.1| - 0.0019 18.0 0.0 0.0052 16.6 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389846679|ref|YP_006348918.1| - 0.0023 17.8 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|389846679|ref|YP_006348918.1| - 0.0042 16.8 0.0 0.0066 16.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389846679|ref|YP_006348918.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|389846679|ref|YP_006348918.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix Arch_flagellin PF01917.16 gi|389846680|ref|YP_006348919.1| - 4.8e-35 121.2 11.9 6.1e-35 120.8 11.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|389846681|ref|YP_006348920.1| - 3.2e-39 134.7 10.3 4.1e-39 134.4 10.3 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin CarboxypepD_reg PF13620.6 gi|389846681|ref|YP_006348920.1| - 0.034 14.4 1.3 0.066 13.5 0.2 2.2 2 2 0 2 2 2 0 Carboxypeptidase regulatory-like domain ATPase PF06745.13 gi|389846683|ref|YP_006348922.1| - 1.4e-50 171.8 0.0 1.6e-50 171.6 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|389846683|ref|YP_006348922.1| - 3.7e-06 26.7 0.0 5.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|389846683|ref|YP_006348922.1| - 0.0021 17.4 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|389846683|ref|YP_006348922.1| - 0.011 15.1 0.2 0.014 14.7 0.2 1.3 1 1 0 1 1 1 0 Rad51 AAA_24 PF13479.6 gi|389846683|ref|YP_006348922.1| - 0.017 14.9 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|389846683|ref|YP_006348922.1| - 0.061 13.2 0.1 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DnaB_C PF03796.15 gi|389846683|ref|YP_006348922.1| - 0.096 12.0 0.0 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|389846683|ref|YP_006348922.1| - 0.16 12.4 0.1 0.26 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain FlaC_arch PF05377.11 gi|389846684|ref|YP_006348923.1| - 3.2e-22 78.7 0.4 3.2e-22 78.7 0.4 3.2 4 0 0 4 4 3 1 Flagella accessory protein C (FlaC) Arch_fla_DE PF04659.13 gi|389846684|ref|YP_006348923.1| - 1.1e-21 76.5 0.1 3e-21 75.1 0.1 1.8 1 0 0 1 1 1 1 Archaeal flagella protein SKA2 PF16740.5 gi|389846684|ref|YP_006348923.1| - 3.7e-05 23.5 0.7 0.39 10.5 1.3 2.5 2 0 0 2 2 2 2 Spindle and kinetochore-associated protein 2 DUF812 PF05667.11 gi|389846684|ref|YP_006348923.1| - 0.0036 16.3 0.0 0.0036 16.3 0.0 2.3 2 0 0 2 2 1 1 Protein of unknown function (DUF812) DUF16 PF01519.16 gi|389846684|ref|YP_006348923.1| - 0.0049 17.3 0.0 0.12 12.8 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function DUF16 ZapB PF06005.12 gi|389846684|ref|YP_006348923.1| - 0.017 15.5 0.5 0.017 15.5 0.5 4.2 3 1 1 4 4 3 0 Cell division protein ZapB Spc7 PF08317.11 gi|389846684|ref|YP_006348923.1| - 0.031 13.2 17.3 0.24 10.2 0.1 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|389846684|ref|YP_006348923.1| - 0.056 13.5 0.5 0.056 13.5 0.5 2.6 4 0 0 4 4 4 0 Protein of unknown function (DUF1664) LPP PF04728.13 gi|389846684|ref|YP_006348923.1| - 0.058 13.8 0.9 4.7 7.7 0.1 3.6 2 1 0 2 2 2 0 Lipoprotein leucine-zipper Sec34 PF04136.15 gi|389846684|ref|YP_006348923.1| - 0.072 13.0 3.9 0.19 11.6 0.0 2.9 2 1 1 3 3 3 0 Sec34-like family bZIP_1 PF00170.21 gi|389846684|ref|YP_006348923.1| - 0.14 12.3 0.2 0.14 12.3 0.2 2.7 3 1 0 3 3 3 0 bZIP transcription factor NPV_P10 PF05531.12 gi|389846684|ref|YP_006348923.1| - 0.16 12.5 0.1 0.16 12.5 0.1 3.2 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Cauli_AT PF03233.13 gi|389846684|ref|YP_006348923.1| - 0.23 11.4 1.1 0.49 10.3 0.0 2.0 2 0 0 2 2 2 0 Aphid transmission protein YabA PF06156.13 gi|389846684|ref|YP_006348923.1| - 0.41 11.3 0.0 0.41 11.3 0.0 3.0 2 1 1 3 3 2 0 Initiation control protein YabA FlgN PF05130.12 gi|389846684|ref|YP_006348923.1| - 1.2 9.6 8.1 9.3 6.8 0.0 3.5 3 1 0 3 3 2 0 FlgN protein APG6_N PF17675.1 gi|389846684|ref|YP_006348923.1| - 1.8 9.1 0.0 1.8 9.1 0.0 4.4 2 1 2 4 4 2 0 Apg6 coiled-coil region DUF948 PF06103.11 gi|389846684|ref|YP_006348923.1| - 1.8 8.8 4.6 4.8 7.5 0.2 3.2 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) EMP24_GP25L PF01105.24 gi|389846684|ref|YP_006348923.1| - 2.9 7.8 0.0 2.9 7.8 0.0 2.5 3 0 0 3 3 3 0 emp24/gp25L/p24 family/GOLD Arch_flagellin PF01917.16 gi|389846685|ref|YP_006348924.1| - 1.1e-07 32.2 9.8 1.3e-07 32.0 9.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin PA-IIL PF07472.11 gi|389846685|ref|YP_006348924.1| - 0.095 13.0 1.1 0.16 12.3 1.0 1.4 1 1 0 1 1 1 0 Fucose-binding lectin II (PA-IIL) Arch_flagellin PF01917.16 gi|389846686|ref|YP_006348925.1| - 6.1e-20 72.0 4.0 7.3e-20 71.8 4.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|389846686|ref|YP_006348925.1| - 3.6e-06 27.2 1.1 4.9e-06 26.7 1.1 1.2 1 0 0 1 1 1 1 CARDB AMPK1_CBM PF16561.5 gi|389846686|ref|YP_006348925.1| - 0.055 13.7 0.1 0.85 9.9 0.0 2.2 1 1 1 2 2 2 0 Glycogen recognition site of AMP-activated protein kinase ATPase PF06745.13 gi|389846687|ref|YP_006348926.1| - 8.6e-18 64.5 0.1 1.4e-17 63.8 0.1 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|389846687|ref|YP_006348926.1| - 6e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|389846687|ref|YP_006348926.1| - 2.9e-05 24.0 0.1 0.00013 21.9 0.1 1.9 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|389846687|ref|YP_006348926.1| - 0.00017 21.9 0.1 0.00042 20.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389846687|ref|YP_006348926.1| - 0.0023 18.3 0.5 0.0046 17.3 0.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.11 gi|389846687|ref|YP_006348926.1| - 0.0069 15.7 0.5 0.02 14.2 0.1 1.7 2 0 0 2 2 2 1 Rad51 AAA PF00004.29 gi|389846687|ref|YP_006348926.1| - 0.024 15.1 0.4 0.061 13.7 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Resolvase PF00239.21 gi|389846687|ref|YP_006348926.1| - 0.038 14.1 0.1 0.062 13.4 0.1 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain PAXNEB PF05625.11 gi|389846687|ref|YP_006348926.1| - 0.051 12.7 0.1 0.65 9.1 0.2 2.0 2 0 0 2 2 2 0 PAXNEB protein TsaE PF02367.17 gi|389846687|ref|YP_006348926.1| - 0.055 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 gi|389846687|ref|YP_006348926.1| - 0.063 12.5 0.0 2 7.5 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain RecA PF00154.21 gi|389846687|ref|YP_006348926.1| - 0.073 12.5 0.1 0.32 10.4 0.0 2.0 2 0 0 2 2 2 0 recA bacterial DNA recombination protein FF PF01846.19 gi|389846687|ref|YP_006348926.1| - 0.088 13.0 0.2 0.3 11.3 0.1 1.9 1 1 1 2 2 2 0 FF domain T2SSE PF00437.20 gi|389846688|ref|YP_006348927.1| - 3.4e-44 150.9 0.0 4.9e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|389846688|ref|YP_006348927.1| - 0.00038 20.9 0.0 0.0025 18.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389846688|ref|YP_006348927.1| - 0.0014 19.0 0.0 0.0027 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|389846688|ref|YP_006348927.1| - 0.0074 16.0 0.0 0.037 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|389846688|ref|YP_006348927.1| - 0.029 14.9 0.0 0.086 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|389846688|ref|YP_006348927.1| - 0.052 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_N PF00350.23 gi|389846688|ref|YP_006348927.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_7 PF12775.7 gi|389846688|ref|YP_006348927.1| - 0.071 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AIG1 PF04548.16 gi|389846688|ref|YP_006348927.1| - 0.12 11.7 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 AIG1 family AAA_23 PF13476.6 gi|389846688|ref|YP_006348927.1| - 0.74 10.3 2.3 0.55 10.7 0.2 1.8 2 0 0 2 2 2 0 AAA domain T2SSF PF00482.23 gi|389846689|ref|YP_006348928.1| - 1.8e-15 57.0 2.2 1.6e-10 41.0 0.2 3.9 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.6 gi|389846689|ref|YP_006348928.1| - 0.19 10.5 0.0 0.3 9.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain CheF-arch PF04283.12 gi|389846690|ref|YP_006348929.1| - 6e-51 173.3 0.0 8.9e-51 172.7 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea HemN_C PF06969.16 gi|389846690|ref|YP_006348929.1| - 0.0035 17.4 0.1 0.0072 16.4 0.1 1.5 1 0 0 1 1 1 1 HemN C-terminal domain CheF-arch PF04283.12 gi|389846691|ref|YP_006348930.1| - 7.7e-67 225.2 0.1 1.2e-66 224.6 0.1 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea CheR PF01739.18 gi|389846692|ref|YP_006348931.1| - 5e-48 163.2 0.0 6.6e-48 162.8 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|389846692|ref|YP_006348931.1| - 2.2e-12 46.5 2.5 2.2e-12 46.5 2.5 1.7 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|389846692|ref|YP_006348931.1| - 3.2e-08 34.2 0.1 1.6e-05 25.6 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389846692|ref|YP_006348931.1| - 3.9e-07 30.7 0.1 0.00034 21.3 0.0 3.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846692|ref|YP_006348931.1| - 0.00012 22.0 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846692|ref|YP_006348931.1| - 0.00015 21.6 0.0 0.0053 16.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846692|ref|YP_006348931.1| - 0.00028 21.5 0.1 0.019 15.6 0.0 3.0 2 1 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|389846692|ref|YP_006348931.1| - 0.029 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) APAF1_C PF17908.1 gi|389846692|ref|YP_006348931.1| - 0.066 13.2 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 APAF-1 helical domain Glyco_hydro_2_C PF02836.17 gi|389846692|ref|YP_006348931.1| - 0.18 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain Acetyltransf_6 PF13480.7 gi|389846692|ref|YP_006348931.1| - 0.26 11.4 8.9 0.036 14.2 1.9 2.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CheW PF01584.19 gi|389846693|ref|YP_006348932.1| - 2.6e-19 69.2 1.5 8.2e-19 67.6 1.5 1.8 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|389846693|ref|YP_006348932.1| - 8e-19 68.2 1.9 2.4e-18 66.7 0.3 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|389846693|ref|YP_006348932.1| - 2.6e-18 66.0 1.4 1.1e-17 64.0 0.2 2.6 2 0 0 2 2 2 1 Hpt domain P2 PF07194.11 gi|389846693|ref|YP_006348932.1| - 7.2e-11 42.0 0.0 4.6e-10 39.4 0.0 2.5 2 0 0 2 2 2 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|389846693|ref|YP_006348932.1| - 2.3e-05 24.7 5.1 8.6e-05 22.9 5.1 2.1 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|389846693|ref|YP_006348932.1| - 0.0091 15.8 0.1 0.032 14.1 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389846693|ref|YP_006348932.1| - 0.013 15.4 1.8 0.022 14.7 0.2 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|389846693|ref|YP_006348932.1| - 0.12 12.3 0.0 0.41 10.6 0.0 2.0 1 1 0 1 1 1 0 GHKL domain Nop14 PF04147.12 gi|389846693|ref|YP_006348932.1| - 4.2 5.5 20.1 7.6 4.6 20.1 1.3 1 0 0 1 1 1 0 Nop14-like family CheB_methylest PF01339.17 gi|662859423|ref|YP_006348933.2| - 2.5e-56 190.1 0.1 4.8e-56 189.1 0.1 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|662859423|ref|YP_006348933.2| - 1.3e-26 93.0 1.6 2.9e-26 91.8 0.7 2.0 2 0 0 2 2 2 1 Response regulator receiver domain CheW PF01584.19 gi|662859424|ref|YP_006348934.2| - 1.3e-25 89.6 0.1 1.5e-25 89.5 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain Xan_ur_permease PF00860.20 gi|389846696|ref|YP_006348935.1| - 1.7e-69 234.4 44.4 1.3e-68 231.5 44.4 2.3 1 1 0 1 1 1 1 Permease family DUF5059 PF16502.5 gi|389846697|ref|YP_006348936.1| - 1.5e-266 886.1 104.6 1.5e-266 886.1 104.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|389846697|ref|YP_006348936.1| - 6.6e-14 52.2 0.3 2.8e-13 50.1 0.3 2.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|389846697|ref|YP_006348936.1| - 3.1e-05 23.6 0.7 3.1e-05 23.6 0.7 3.5 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence OEP PF02321.18 gi|389846697|ref|YP_006348936.1| - 0.0099 15.7 0.3 0.035 13.9 0.3 2.0 1 0 0 1 1 1 1 Outer membrane efflux protein Cupredoxin_1 PF13473.6 gi|389846697|ref|YP_006348936.1| - 0.1 12.7 0.1 0.55 10.4 0.1 2.0 1 1 0 1 1 1 0 Cupredoxin-like domain TarH PF02203.15 gi|389846697|ref|YP_006348936.1| - 0.28 11.1 23.9 0.39 10.6 0.5 4.5 3 2 1 5 5 5 0 Tar ligand binding domain homologue MS_channel PF00924.18 gi|389846698|ref|YP_006348937.1| - 4.8e-46 156.9 0.0 7.1e-46 156.4 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel YdjM PF04307.14 gi|389846699|ref|YP_006348938.1| - 1.1e-16 60.6 11.6 7.6e-16 57.9 11.6 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase LapA_dom PF06305.11 gi|389846699|ref|YP_006348938.1| - 0.93 9.3 0.0 0.93 9.3 0.0 3.4 5 0 0 5 5 5 0 Lipopolysaccharide assembly protein A domain CMD PF02627.20 gi|389846700|ref|YP_006348939.1| - 1.4e-09 37.8 0.2 2.7e-08 33.8 0.1 2.4 2 1 1 3 3 3 2 Carboxymuconolactone decarboxylase family CSD PF00313.22 gi|389846701|ref|YP_006348940.1| - 2.3e-21 75.4 0.3 2.5e-21 75.3 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|389846701|ref|YP_006348940.1| - 0.0089 15.7 1.4 0.015 15.0 1.4 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain S1-like PF14444.6 gi|389846701|ref|YP_006348940.1| - 0.02 14.8 0.3 0.026 14.4 0.3 1.4 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.8 gi|389846701|ref|YP_006348940.1| - 0.091 12.7 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Creatininase PF02633.14 gi|389846702|ref|YP_006348941.1| - 4.8e-67 225.9 0.3 5.5e-67 225.7 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase AMP-binding PF00501.28 gi|662859425|ref|YP_006348942.2| - 4.4e-79 266.1 0.0 5.4e-79 265.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|662859425|ref|YP_006348942.2| - 1.9e-24 86.4 0.4 4.9e-24 85.1 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3930 PF13067.6 gi|389846704|ref|YP_006348943.1| - 6 7.2 4.7 8.2 6.8 1.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3930) Aldo_ket_red PF00248.21 gi|662859426|ref|YP_006348944.2| - 6.1e-71 239.0 0.0 7.6e-71 238.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MBOAT_2 PF13813.6 gi|389846706|ref|YP_006348945.1| - 0.058 13.7 0.7 0.15 12.4 0.5 1.8 1 1 1 2 2 2 0 Membrane bound O-acyl transferase family MFS_1 PF07690.16 gi|389846707|ref|YP_006348946.1| - 3e-34 118.5 66.7 1.6e-21 76.7 29.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389846707|ref|YP_006348946.1| - 0.3 9.9 26.7 6 5.6 26.7 3.1 1 1 0 1 1 1 0 MFS_1 like family DUF3482 PF11981.8 gi|389846707|ref|YP_006348946.1| - 4.7 6.5 7.6 9.7 5.5 7.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Iron_transport PF10634.9 gi|389846708|ref|YP_006348947.1| - 4.2e-08 33.5 0.0 3.1e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 Fe2+ transport protein SCO1-SenC PF02630.14 gi|389846709|ref|YP_006348948.1| - 7.5e-18 64.7 0.2 9.4e-18 64.4 0.2 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.9 gi|389846709|ref|YP_006348948.1| - 0.016 15.1 2.0 0.028 14.3 2.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3666 PF12408.8 gi|389846709|ref|YP_006348948.1| - 0.071 12.3 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase TAT_signal PF10518.9 gi|389846710|ref|YP_006348949.1| - 0.0001 22.0 6.3 0.00022 21.0 6.3 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DsbD PF02683.15 gi|389846711|ref|YP_006348950.1| - 4.2e-10 39.9 15.2 6.7e-10 39.2 15.2 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.10 gi|389846712|ref|YP_006348951.1| - 2.3e-12 46.8 0.0 3e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|389846712|ref|YP_006348951.1| - 2.2e-10 40.5 0.0 2.7e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|389846712|ref|YP_006348951.1| - 6.2e-07 29.7 0.0 1.4e-06 28.5 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|389846712|ref|YP_006348951.1| - 6.8e-06 26.5 0.0 1.2e-05 25.7 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|389846712|ref|YP_006348951.1| - 0.00014 21.8 0.0 0.0015 18.5 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|389846713|ref|YP_006348952.1| - 2.7e-38 131.8 0.0 3.2e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|389846713|ref|YP_006348952.1| - 2.7e-08 33.8 1.6 0.00068 19.5 0.1 2.2 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Fer2 PF00111.27 gi|662859427|ref|YP_006348954.2| - 1e-08 35.0 0.1 1.5e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|662859427|ref|YP_006348954.2| - 0.062 13.3 0.0 0.084 12.9 0.0 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NUDIX PF00293.28 gi|389846716|ref|YP_006348955.1| - 3.9e-19 69.0 0.2 6.4e-19 68.3 0.2 1.3 1 0 0 1 1 1 1 NUDIX domain DUF1918 PF08940.11 gi|389846717|ref|YP_006348956.1| - 0.018 14.6 0.0 0.022 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) DUF3862 PF12978.7 gi|389846717|ref|YP_006348956.1| - 0.021 14.6 0.1 0.023 14.5 0.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3862) NifZ PF04319.13 gi|389846717|ref|YP_006348956.1| - 0.039 13.8 0.2 0.061 13.1 0.2 1.3 1 1 0 1 1 1 0 NifZ domain DAPG_hydrolase PF18089.1 gi|389846717|ref|YP_006348956.1| - 0.18 11.3 0.2 0.18 11.4 0.2 1.0 1 0 0 1 1 1 0 DAPG hydrolase PhiG domain RNA_binding PF01877.17 gi|389846718|ref|YP_006348957.1| - 1.2e-32 112.6 0.5 1.6e-32 112.2 0.4 1.3 1 1 0 1 1 1 1 RNA binding FragX_IP PF05994.11 gi|389846718|ref|YP_006348957.1| - 0.014 13.5 0.1 0.016 13.3 0.1 1.0 1 0 0 1 1 1 0 Cytoplasmic Fragile-X interacting family AhpC-TSA PF00578.21 gi|389846719|ref|YP_006348958.1| - 4.4e-17 62.2 0.0 5.8e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|389846719|ref|YP_006348958.1| - 8.5e-14 51.5 0.0 1.1e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|389846719|ref|YP_006348958.1| - 0.0053 17.2 0.3 0.014 15.9 0.2 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain EamA PF00892.20 gi|389846720|ref|YP_006348959.1| - 1.4e-07 31.7 16.2 1.7e-07 31.5 16.2 1.1 1 0 0 1 1 1 1 EamA-like transporter family DUF4407 PF14362.6 gi|389846720|ref|YP_006348959.1| - 0.31 10.4 5.4 0.11 11.9 3.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) UBZ_FAAP20 PF15750.5 gi|389846721|ref|YP_006348960.1| - 0.094 12.7 0.7 5.4 7.1 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-binding zinc-finger zf-Di19 PF05605.12 gi|389846721|ref|YP_006348960.1| - 0.095 13.0 0.1 0.28 11.5 0.1 1.9 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding SnoaL PF07366.12 gi|389846722|ref|YP_006348961.1| - 4.5e-18 65.3 0.2 5.1e-18 65.1 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|389846722|ref|YP_006348961.1| - 1.2e-08 35.5 1.7 1.6e-08 35.1 1.7 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4848 PF16140.5 gi|389846722|ref|YP_006348961.1| - 0.11 12.0 0.1 0.13 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4848) MFS_1 PF07690.16 gi|389846724|ref|YP_006348963.1| - 3.7e-38 131.4 47.6 3.8e-21 75.4 17.3 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|389846724|ref|YP_006348963.1| - 1.1e-05 23.9 1.4 0.0011 17.4 0.0 2.4 2 1 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.24 gi|389846724|ref|YP_006348963.1| - 0.00025 20.1 8.5 0.00025 20.1 8.5 2.2 3 0 0 3 3 3 1 Sugar (and other) transporter DUF58 PF01882.18 gi|389846725|ref|YP_006348964.1| - 8.9e-21 74.0 0.0 6e-20 71.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|389846725|ref|YP_006348964.1| - 0.02 15.5 0.0 0.04 14.6 0.0 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|389846725|ref|YP_006348964.1| - 0.072 12.5 0.1 0.29 10.5 0.1 1.9 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein AAA_3 PF07726.11 gi|389846726|ref|YP_006348965.1| - 1.9e-61 205.6 0.1 3.1e-61 205.0 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|389846726|ref|YP_006348965.1| - 1.1e-19 70.1 1.3 2.6e-19 68.8 1.3 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|389846726|ref|YP_006348965.1| - 3.5e-12 46.5 0.0 6.2e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|389846726|ref|YP_006348965.1| - 7.3e-07 29.7 0.0 1.1e-06 29.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|389846726|ref|YP_006348965.1| - 1e-06 28.1 0.0 1.5e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|389846726|ref|YP_006348965.1| - 0.00043 20.0 0.0 0.0041 16.8 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|389846726|ref|YP_006348965.1| - 0.011 15.5 0.0 0.18 11.6 0.0 2.3 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|389846726|ref|YP_006348965.1| - 0.012 15.0 0.0 0.2 11.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF1192 PF06698.11 gi|389846726|ref|YP_006348965.1| - 0.041 13.9 0.0 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) AAA_16 PF13191.6 gi|389846726|ref|YP_006348965.1| - 0.095 13.1 0.1 0.24 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain Laminin_II PF06009.12 gi|389846728|ref|YP_006348967.1| - 9.5e-10 38.6 24.1 4e-08 33.4 10.8 3.0 1 1 2 3 3 3 3 Laminin Domain II FPP PF05911.11 gi|389846728|ref|YP_006348967.1| - 2.7e-09 35.8 31.1 2.5e-08 32.7 31.2 1.7 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil HemX PF04375.14 gi|389846728|ref|YP_006348967.1| - 1.1e-07 31.5 21.4 1.8e-05 24.2 9.3 2.0 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase Spc7 PF08317.11 gi|389846728|ref|YP_006348967.1| - 3e-07 29.6 30.4 6.3e-07 28.6 30.4 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF3450 PF11932.8 gi|389846728|ref|YP_006348967.1| - 3.3e-07 29.9 25.6 0.00012 21.5 10.6 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Filament PF00038.21 gi|389846728|ref|YP_006348967.1| - 4.4e-07 29.8 26.8 9.8e-06 25.4 14.0 2.1 1 1 1 2 2 2 2 Intermediate filament protein ATG16 PF08614.11 gi|389846728|ref|YP_006348967.1| - 4.5e-07 30.3 38.1 3.5e-06 27.4 38.0 1.8 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) Rab5-bind PF09311.11 gi|389846728|ref|YP_006348967.1| - 5e-07 29.4 29.2 0.0001 21.8 20.2 2.1 1 1 1 2 2 2 2 Rabaptin-like protein EzrA PF06160.12 gi|389846728|ref|YP_006348967.1| - 5.8e-07 28.1 20.9 1.4e-06 26.8 20.9 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA KxDL PF10241.9 gi|389846728|ref|YP_006348967.1| - 6.3e-07 29.6 22.6 0.0085 16.3 2.0 3.2 1 1 2 3 3 3 3 Uncharacterized conserved protein DUF1664 PF07889.12 gi|389846728|ref|YP_006348967.1| - 8.7e-07 29.0 20.0 0.0059 16.6 10.3 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.7 gi|389846728|ref|YP_006348967.1| - 8.9e-07 29.2 37.7 0.0034 17.6 12.1 2.9 1 1 1 2 2 2 2 Tropomyosin like ADIP PF11559.8 gi|389846728|ref|YP_006348967.1| - 1.6e-06 28.3 32.9 0.014 15.5 13.6 2.7 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding AIP3 PF03915.13 gi|389846728|ref|YP_006348967.1| - 1.8e-06 27.4 18.5 2.2e-06 27.0 18.5 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 Myosin_tail_1 PF01576.19 gi|389846728|ref|YP_006348967.1| - 1.8e-06 26.1 27.7 2.4e-06 25.7 27.7 1.1 1 0 0 1 1 1 1 Myosin tail Mod_r PF07200.13 gi|389846728|ref|YP_006348967.1| - 4.2e-06 26.9 31.3 0.0004 20.5 8.7 2.8 1 1 0 2 2 2 2 Modifier of rudimentary (Mod(r)) protein TPR_MLP1_2 PF07926.12 gi|389846728|ref|YP_006348967.1| - 5.2e-06 26.5 35.0 6.7e-05 23.0 29.8 2.7 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 gi|389846728|ref|YP_006348967.1| - 5.6e-06 26.2 25.1 0.0002 21.2 12.1 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) KASH_CCD PF14662.6 gi|389846728|ref|YP_006348967.1| - 5.9e-06 26.2 34.3 0.0051 16.7 15.9 2.0 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH DivIC PF04977.15 gi|389846728|ref|YP_006348967.1| - 7.2e-06 25.7 32.0 0.0011 18.6 7.7 4.5 1 1 4 5 5 5 3 Septum formation initiator TMF_DNA_bd PF12329.8 gi|389846728|ref|YP_006348967.1| - 8.3e-06 25.7 40.1 0.00016 21.6 11.9 3.2 1 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|389846728|ref|YP_006348967.1| - 8.4e-06 26.3 5.6 8.4e-06 26.3 5.6 3.7 1 1 2 3 3 3 1 SlyX Atg14 PF10186.9 gi|389846728|ref|YP_006348967.1| - 9.5e-06 24.9 25.8 0.0022 17.1 13.6 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 LPP PF04728.13 gi|389846728|ref|YP_006348967.1| - 1.3e-05 25.5 24.8 0.049 14.0 0.4 4.4 3 2 1 4 4 4 2 Lipoprotein leucine-zipper ZapB PF06005.12 gi|389846728|ref|YP_006348967.1| - 1.8e-05 25.1 36.4 0.0048 17.3 12.8 3.6 1 1 2 3 3 3 2 Cell division protein ZapB DUF4686 PF15742.5 gi|389846728|ref|YP_006348967.1| - 2.5e-05 23.6 26.2 3.5e-05 23.1 26.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4686) TolA_bind_tri PF16331.5 gi|389846728|ref|YP_006348967.1| - 3e-05 24.0 32.7 0.011 15.8 3.6 3.2 1 1 1 3 3 3 2 TolA binding protein trimerisation ERM PF00769.19 gi|389846728|ref|YP_006348967.1| - 3.1e-05 23.9 28.5 0.00039 20.3 13.8 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family BLOC1_2 PF10046.9 gi|389846728|ref|YP_006348967.1| - 3.5e-05 24.0 28.4 0.015 15.6 6.1 3.3 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|389846728|ref|YP_006348967.1| - 3.5e-05 22.9 25.4 0.00094 18.2 18.3 2.0 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 COG2 PF06148.11 gi|389846728|ref|YP_006348967.1| - 4.5e-05 23.5 18.2 0.0042 17.2 4.7 3.2 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 MscS_porin PF12795.7 gi|389846728|ref|YP_006348967.1| - 4.6e-05 23.1 38.3 0.006 16.1 12.4 2.1 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain AAA_13 PF13166.6 gi|389846728|ref|YP_006348967.1| - 6.8e-05 21.7 20.1 9e-05 21.3 20.1 1.1 1 0 0 1 1 1 1 AAA domain Prefoldin_2 PF01920.20 gi|389846728|ref|YP_006348967.1| - 7.1e-05 22.7 32.6 0.04 13.9 1.9 4.1 1 1 3 4 4 4 1 Prefoldin subunit HMMR_N PF15905.5 gi|389846728|ref|YP_006348967.1| - 7.9e-05 22.3 29.9 0.00022 20.8 29.9 1.6 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal CENP-F_leu_zip PF10473.9 gi|389846728|ref|YP_006348967.1| - 7.9e-05 22.7 33.9 0.0064 16.5 18.7 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4407 PF14362.6 gi|389846728|ref|YP_006348967.1| - 9.1e-05 22.0 24.9 0.03 13.7 3.9 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) YscO PF07321.12 gi|389846728|ref|YP_006348967.1| - 0.0001 22.3 27.2 0.034 14.1 1.2 3.1 1 1 2 3 3 3 2 Type III secretion protein YscO Rootletin PF15035.6 gi|389846728|ref|YP_006348967.1| - 0.00011 22.3 33.8 0.013 15.5 20.5 2.2 1 1 1 2 2 2 2 Ciliary rootlet component, centrosome cohesion FliJ PF02050.16 gi|389846728|ref|YP_006348967.1| - 0.00014 22.0 20.5 0.0086 16.3 3.9 2.6 1 1 1 2 2 2 2 Flagellar FliJ protein DUF4763 PF15960.5 gi|389846728|ref|YP_006348967.1| - 0.00015 21.1 28.0 0.0042 16.4 7.3 2.9 1 1 2 3 3 3 2 Domain of unknown function (DUF4763) DUF4618 PF15397.6 gi|389846728|ref|YP_006348967.1| - 0.00019 21.0 28.5 0.00073 19.0 15.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) GAS PF13851.6 gi|389846728|ref|YP_006348967.1| - 0.00019 20.8 29.8 0.0035 16.7 29.8 2.0 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Fez1 PF06818.15 gi|389846728|ref|YP_006348967.1| - 0.00027 21.4 27.1 0.0015 19.1 27.1 1.8 1 1 0 1 1 1 1 Fez1 APG6_N PF17675.1 gi|389846728|ref|YP_006348967.1| - 0.00034 21.2 37.4 0.044 14.3 15.8 2.2 1 1 1 2 2 2 2 Apg6 coiled-coil region HOOK PF05622.12 gi|389846728|ref|YP_006348967.1| - 0.00044 18.5 34.8 0.001 17.4 23.8 2.0 1 1 1 2 2 2 1 HOOK protein DUF4600 PF15372.6 gi|389846728|ref|YP_006348967.1| - 0.00045 20.7 21.1 0.18 12.2 14.6 2.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4600) DUF3584 PF12128.8 gi|389846728|ref|YP_006348967.1| - 0.00046 17.9 26.5 0.00083 17.0 26.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF812 PF05667.11 gi|389846728|ref|YP_006348967.1| - 0.00046 19.2 29.5 0.024 13.5 13.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF812) Uso1_p115_C PF04871.13 gi|389846728|ref|YP_006348967.1| - 0.00051 20.4 33.1 0.041 14.2 9.7 2.2 1 1 1 2 2 2 2 Uso1 / p115 like vesicle tethering protein, C terminal region Spectrin PF00435.21 gi|389846728|ref|YP_006348967.1| - 0.00056 20.4 23.0 0.0084 16.6 13.0 2.1 2 0 0 2 2 2 1 Spectrin repeat Syntaxin-6_N PF09177.11 gi|389846728|ref|YP_006348967.1| - 0.00056 20.4 26.1 0.04 14.5 7.3 2.7 1 1 1 2 2 2 2 Syntaxin 6, N-terminal DUF4200 PF13863.6 gi|389846728|ref|YP_006348967.1| - 0.00057 20.3 28.7 0.0013 19.1 15.9 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) DUF948 PF06103.11 gi|389846728|ref|YP_006348967.1| - 0.00058 20.1 20.3 0.029 14.6 3.8 3.2 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) DUF5082 PF16888.5 gi|389846728|ref|YP_006348967.1| - 0.00062 20.0 27.0 0.0014 18.9 14.9 2.8 1 1 0 2 2 2 1 Domain of unknown function (DUF5082) PspA_IM30 PF04012.12 gi|389846728|ref|YP_006348967.1| - 0.00068 19.3 25.4 0.14 11.7 3.2 3.3 1 1 2 3 3 3 1 PspA/IM30 family PI3K_P85_iSH2 PF16454.5 gi|389846728|ref|YP_006348967.1| - 0.00078 19.1 13.7 0.00078 19.1 13.7 2.4 1 1 1 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain MAD PF05557.13 gi|389846728|ref|YP_006348967.1| - 0.00084 17.8 29.8 0.0032 15.9 29.8 1.8 1 1 0 1 1 1 1 Mitotic checkpoint protein UPF0242 PF06785.11 gi|389846728|ref|YP_006348967.1| - 0.0011 19.1 25.2 0.0011 19.1 25.2 2.0 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus TMPIT PF07851.13 gi|389846728|ref|YP_006348967.1| - 0.0012 18.2 21.4 0.065 12.5 2.9 2.1 1 1 1 2 2 2 2 TMPIT-like protein Tropomyosin PF00261.20 gi|389846728|ref|YP_006348967.1| - 0.0012 18.3 32.2 0.0057 16.1 20.1 2.8 1 1 2 3 3 3 2 Tropomyosin WEMBL PF05701.11 gi|389846728|ref|YP_006348967.1| - 0.0012 17.6 8.4 0.0012 17.6 8.4 2.0 1 1 1 2 2 2 1 Weak chloroplast movement under blue light Leu_zip PF15294.6 gi|389846728|ref|YP_006348967.1| - 0.0013 18.3 26.8 0.02 14.4 17.5 2.1 1 1 1 2 2 2 1 Leucine zipper CALCOCO1 PF07888.11 gi|389846728|ref|YP_006348967.1| - 0.0014 17.6 29.3 0.099 11.5 15.6 2.1 1 1 1 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like Cnn_1N PF07989.11 gi|389846728|ref|YP_006348967.1| - 0.0017 18.5 30.3 0.024 14.8 8.1 3.3 1 1 2 3 3 3 1 Centrosomin N-terminal motif 1 Golgin_A5 PF09787.9 gi|389846728|ref|YP_006348967.1| - 0.0017 17.9 30.8 0.0045 16.5 30.8 1.5 1 1 0 1 1 1 1 Golgin subfamily A member 5 Jnk-SapK_ap_N PF09744.9 gi|389846728|ref|YP_006348967.1| - 0.0019 18.5 32.9 0.14 12.4 15.1 2.1 1 1 1 2 2 2 2 JNK_SAPK-associated protein-1 DUF724 PF05266.14 gi|389846728|ref|YP_006348967.1| - 0.0019 18.0 21.9 0.01 15.7 11.3 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF724) FlaC_arch PF05377.11 gi|389846728|ref|YP_006348967.1| - 0.002 18.4 29.5 1.2 9.5 10.0 5.2 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) Wtap PF17098.5 gi|389846728|ref|YP_006348967.1| - 0.0022 18.0 25.4 0.0023 17.9 23.5 1.9 1 1 0 1 1 1 1 WTAP/Mum2p family Lebercilin PF15619.6 gi|389846728|ref|YP_006348967.1| - 0.0028 17.4 32.4 0.0078 15.9 29.6 2.1 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF745 PF05335.13 gi|389846728|ref|YP_006348967.1| - 0.0029 17.4 9.8 0.0029 17.4 9.8 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF745) BST2 PF16716.5 gi|389846728|ref|YP_006348967.1| - 0.003 18.1 30.5 0.21 12.2 10.7 3.2 1 1 2 3 3 3 1 Bone marrow stromal antigen 2 MCPsignal PF00015.21 gi|389846728|ref|YP_006348967.1| - 0.0031 17.3 4.3 0.0031 17.3 4.3 2.1 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HrpB7 PF09486.10 gi|389846728|ref|YP_006348967.1| - 0.0031 17.9 19.2 0.043 14.2 11.6 3.0 1 1 2 3 3 3 2 Bacterial type III secretion protein (HrpB7) Uds1 PF15456.6 gi|389846728|ref|YP_006348967.1| - 0.0032 17.6 24.7 0.0087 16.2 17.1 2.3 1 1 1 2 2 2 1 Up-regulated During Septation DLP_helical PF18709.1 gi|389846728|ref|YP_006348967.1| - 0.0033 16.7 24.4 0.1 11.8 4.4 3.0 1 1 2 3 3 3 2 Dynamin-like helical domain ApoLp-III PF07464.11 gi|389846728|ref|YP_006348967.1| - 0.0035 17.4 20.6 1.7e+02 2.2 20.6 2.9 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Tektin PF03148.14 gi|389846728|ref|YP_006348967.1| - 0.0038 16.0 27.7 0.24 10.1 12.2 2.6 1 1 1 2 2 2 1 Tektin family HAP1_N PF04849.13 gi|389846728|ref|YP_006348967.1| - 0.0038 16.5 30.8 0.2 10.8 19.3 2.5 1 1 1 2 2 2 2 HAP1 N-terminal conserved region BRE1 PF08647.11 gi|389846728|ref|YP_006348967.1| - 0.0043 17.1 28.8 0.0067 16.5 13.6 2.8 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase DHR10 PF18595.1 gi|389846728|ref|YP_006348967.1| - 0.0048 16.9 34.5 0.023 14.7 17.7 2.6 1 1 1 2 2 2 2 Designed helical repeat protein 10 domain FUSC PF04632.12 gi|389846728|ref|YP_006348967.1| - 0.0052 15.4 6.8 0.0072 14.9 6.8 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family bZIP_1 PF00170.21 gi|389846728|ref|YP_006348967.1| - 0.0056 16.7 27.3 0.03 14.4 5.4 4.6 1 1 1 2 2 1 1 bZIP transcription factor APG17 PF04108.12 gi|389846728|ref|YP_006348967.1| - 0.006 15.8 22.9 0.013 14.6 10.1 2.1 1 1 1 2 2 2 1 Autophagy protein Apg17 THOC7 PF05615.13 gi|389846728|ref|YP_006348967.1| - 0.007 16.7 27.6 0.047 14.0 9.8 3.1 1 1 2 3 3 3 1 Tho complex subunit 7 Exonuc_VII_L PF02601.15 gi|389846728|ref|YP_006348967.1| - 0.0071 16.0 21.0 0.013 15.1 21.0 1.4 1 1 0 1 1 1 1 Exonuclease VII, large subunit Baculo_PEP_C PF04513.12 gi|389846728|ref|YP_006348967.1| - 0.0072 16.4 22.7 47 4.0 22.7 2.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_I PF06008.14 gi|389846728|ref|YP_006348967.1| - 0.0072 16.1 27.2 0.012 15.4 14.6 2.1 1 1 1 2 2 2 1 Laminin Domain I FlxA PF14282.6 gi|389846728|ref|YP_006348967.1| - 0.0072 16.3 8.0 0.0072 16.3 8.0 3.2 1 1 2 3 3 2 1 FlxA-like protein Bacillus_HBL PF05791.11 gi|389846728|ref|YP_006348967.1| - 0.0074 16.1 23.0 0.088 12.6 12.0 2.3 1 1 1 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) Fib_alpha PF08702.10 gi|389846728|ref|YP_006348967.1| - 0.0075 16.5 24.4 0.03 14.5 11.2 2.1 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family MctB PF11382.8 gi|389846728|ref|YP_006348967.1| - 0.0085 15.8 1.3 0.0085 15.8 1.3 3.7 1 1 3 4 4 4 1 Copper transport outer membrane protein, MctB Seryl_tRNA_N PF02403.22 gi|389846728|ref|YP_006348967.1| - 0.0096 16.1 27.9 0.053 13.8 11.3 3.0 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain HIP1_clath_bdg PF16515.5 gi|389846728|ref|YP_006348967.1| - 0.01 16.4 14.1 0.01 16.4 14.1 3.1 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 V-SNARE_C PF12352.8 gi|389846728|ref|YP_006348967.1| - 0.01 16.1 19.5 0.21 11.9 1.1 4.4 1 1 2 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus NPV_P10 PF05531.12 gi|389846728|ref|YP_006348967.1| - 0.011 16.2 26.5 29 5.2 3.8 4.1 1 1 1 2 2 1 0 Nucleopolyhedrovirus P10 protein Sec2p PF06428.11 gi|389846728|ref|YP_006348967.1| - 0.012 15.6 32.2 1.9 8.5 8.4 3.8 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p DUF2968 PF11180.8 gi|389846728|ref|YP_006348967.1| - 0.012 15.2 5.7 0.012 15.2 5.7 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) Prefoldin PF02996.17 gi|389846728|ref|YP_006348967.1| - 0.013 15.4 27.9 0.57 10.1 3.5 4.4 1 1 4 5 5 5 0 Prefoldin subunit DUF4795 PF16043.5 gi|389846728|ref|YP_006348967.1| - 0.014 15.0 27.7 0.09 12.4 7.3 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) Phage_HK97_TLTM PF06120.11 gi|389846728|ref|YP_006348967.1| - 0.014 14.6 17.6 0.11 11.6 15.4 2.2 1 1 1 2 2 2 0 Tail length tape measure protein DUF2730 PF10805.8 gi|389846728|ref|YP_006348967.1| - 0.015 15.4 18.9 0.53 10.4 4.9 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) TMF_TATA_bd PF12325.8 gi|389846728|ref|YP_006348967.1| - 0.017 15.4 32.2 0.037 14.2 19.8 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding FH2 PF02181.23 gi|389846728|ref|YP_006348967.1| - 0.017 14.3 19.5 0.37 9.8 6.8 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain Swi5 PF07061.11 gi|389846728|ref|YP_006348967.1| - 0.018 15.1 27.7 3.5 7.8 4.6 4.3 1 1 3 4 4 4 0 Swi5 ApoO PF09769.9 gi|389846728|ref|YP_006348967.1| - 0.018 15.0 8.8 0.5 10.3 3.5 2.9 1 1 1 2 2 2 0 Apolipoprotein O T2SSM PF04612.12 gi|389846728|ref|YP_006348967.1| - 0.019 15.0 8.9 0.041 13.9 1.4 3.2 1 1 2 3 3 3 0 Type II secretion system (T2SS), protein M Peptidase_S46 PF10459.9 gi|389846728|ref|YP_006348967.1| - 0.02 13.6 11.4 0.025 13.2 11.4 1.1 1 0 0 1 1 1 0 Peptidase S46 Halogen_Hydrol PF10112.9 gi|389846728|ref|YP_006348967.1| - 0.021 14.8 13.2 0.049 13.7 13.2 1.9 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein FapA PF03961.13 gi|389846728|ref|YP_006348967.1| - 0.021 13.4 22.4 0.11 11.0 7.6 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A BCAS2 PF05700.11 gi|389846728|ref|YP_006348967.1| - 0.021 14.5 19.5 0.14 11.8 11.1 2.3 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) CENP-K PF11802.8 gi|389846728|ref|YP_006348967.1| - 0.023 14.3 22.9 0.042 13.4 22.9 1.4 1 1 0 1 1 1 0 Centromere-associated protein K Snapin_Pallidin PF14712.6 gi|389846728|ref|YP_006348967.1| - 0.023 15.1 9.7 0.023 15.1 9.7 3.4 1 1 3 4 4 4 0 Snapin/Pallidin XhlA PF10779.9 gi|389846728|ref|YP_006348967.1| - 0.023 14.9 31.0 0.23 11.7 2.6 4.3 1 1 3 5 5 5 0 Haemolysin XhlA DUF4988 PF16378.5 gi|389846728|ref|YP_006348967.1| - 0.024 14.3 0.2 0.024 14.3 0.2 3.1 3 1 0 3 3 2 0 Domain of unknown function KELK PF15796.5 gi|389846728|ref|YP_006348967.1| - 0.024 15.1 12.2 0.024 15.1 12.2 3.1 1 1 2 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF2959 PF11172.8 gi|389846728|ref|YP_006348967.1| - 0.028 14.5 15.6 0.12 12.4 3.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) DUF3829 PF12889.7 gi|389846728|ref|YP_006348967.1| - 0.029 13.8 14.7 2 7.8 2.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) Prominin PF05478.11 gi|389846728|ref|YP_006348967.1| - 0.035 12.1 20.1 0.042 11.8 18.6 1.8 1 1 0 1 1 1 0 Prominin DegS PF05384.11 gi|389846728|ref|YP_006348967.1| - 0.039 13.5 23.5 0.33 10.4 5.2 3.1 1 1 2 3 3 3 0 Sensor protein DegS YabA PF06156.13 gi|389846728|ref|YP_006348967.1| - 0.039 14.6 24.5 0.082 13.6 6.7 3.1 1 1 1 2 2 2 0 Initiation control protein YabA DUF4446 PF14584.6 gi|389846728|ref|YP_006348967.1| - 0.041 13.9 16.8 1 9.4 1.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) FliS PF02561.14 gi|389846728|ref|YP_006348967.1| - 0.044 14.1 7.7 0.11 12.8 2.1 2.5 1 1 1 2 2 2 0 Flagellar protein FliS OmpH PF03938.14 gi|389846728|ref|YP_006348967.1| - 0.045 14.1 28.3 0.097 13.0 10.7 2.9 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) PMEI PF04043.15 gi|389846728|ref|YP_006348967.1| - 0.047 14.0 12.7 0.098 13.0 8.6 2.1 1 1 1 2 2 2 0 Plant invertase/pectin methylesterase inhibitor PRKG1_interact PF15898.5 gi|389846728|ref|YP_006348967.1| - 0.049 14.5 27.5 3 8.8 11.3 2.8 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain LapA_dom PF06305.11 gi|389846728|ref|YP_006348967.1| - 0.05 13.4 0.0 0.05 13.4 0.0 4.7 3 2 1 4 4 3 0 Lipopolysaccharide assembly protein A domain DUF3138 PF11336.8 gi|389846728|ref|YP_006348967.1| - 0.052 12.2 1.1 0.62 8.6 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3138) CCDC144C PF14915.6 gi|389846728|ref|YP_006348967.1| - 0.055 12.6 30.2 0.3 10.1 30.2 1.8 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Sec34 PF04136.15 gi|389846728|ref|YP_006348967.1| - 0.059 13.3 24.2 0.034 14.0 6.9 2.6 1 1 1 2 2 2 0 Sec34-like family CENP-H PF05837.12 gi|389846728|ref|YP_006348967.1| - 0.067 13.6 30.5 1.9 9.0 14.1 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Med9 PF07544.13 gi|389846728|ref|YP_006348967.1| - 0.068 13.3 27.1 0.82 9.8 7.2 3.5 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 BMFP PF04380.13 gi|389846728|ref|YP_006348967.1| - 0.077 13.5 15.8 0.091 13.2 0.5 4.3 2 2 1 4 4 3 0 Membrane fusogenic activity RmuC PF02646.16 gi|389846728|ref|YP_006348967.1| - 0.079 12.1 22.9 0.98 8.5 1.3 3.0 1 1 0 2 2 2 0 RmuC family WXG100 PF06013.12 gi|389846728|ref|YP_006348967.1| - 0.079 13.2 17.0 3.2 8.0 0.2 4.3 1 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF3552 PF12072.8 gi|389846728|ref|YP_006348967.1| - 0.084 12.3 35.5 0.34 10.3 11.1 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) BicD PF09730.9 gi|389846728|ref|YP_006348967.1| - 0.089 11.2 23.3 0.12 10.8 23.3 1.2 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D TACC_C PF05010.14 gi|389846728|ref|YP_006348967.1| - 0.094 12.5 23.2 0.35 10.6 23.2 1.8 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Cluap1 PF10234.9 gi|389846728|ref|YP_006348967.1| - 0.098 12.0 26.9 0.55 9.6 13.6 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 FliD_C PF07195.12 gi|389846728|ref|YP_006348967.1| - 0.1 12.0 22.2 5.5 6.3 5.0 3.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF16 PF01519.16 gi|389846728|ref|YP_006348967.1| - 0.1 13.1 24.1 0.13 12.8 10.2 3.3 1 1 1 2 2 1 0 Protein of unknown function DUF16 SHE3 PF17078.5 gi|389846728|ref|YP_006348967.1| - 0.11 12.3 30.9 0.74 9.5 30.9 2.0 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF1043 PF06295.12 gi|389846728|ref|YP_006348967.1| - 0.11 12.6 22.5 1.1 9.3 2.3 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1043) YvrJ PF12841.7 gi|389846728|ref|YP_006348967.1| - 0.11 12.0 6.5 0.32 10.6 0.3 3.4 3 0 0 3 3 3 0 YvrJ protein family GrpE PF01025.19 gi|389846728|ref|YP_006348967.1| - 0.12 12.1 28.2 0.16 11.7 4.5 3.2 1 1 1 2 2 1 0 GrpE JIP_LZII PF16471.5 gi|389846728|ref|YP_006348967.1| - 0.13 12.4 31.5 0.48 10.6 4.9 3.8 1 1 3 4 4 4 0 JNK-interacting protein leucine zipper II CEP63 PF17045.5 gi|389846728|ref|YP_006348967.1| - 0.14 12.1 27.3 8.6 6.2 27.4 2.2 1 1 0 1 1 1 0 Centrosomal protein of 63 kDa Phage_GP20 PF06810.11 gi|389846728|ref|YP_006348967.1| - 0.14 12.0 33.1 0.088 12.6 10.2 3.3 1 1 2 3 3 3 0 Phage minor structural protein GP20 FmiP_Thoc5 PF09766.9 gi|389846728|ref|YP_006348967.1| - 0.15 11.3 24.9 0.072 12.4 3.4 2.6 1 1 2 3 3 3 0 Fms-interacting protein/Thoc5 SKA1 PF07160.12 gi|389846728|ref|YP_006348967.1| - 0.16 11.8 18.8 1 9.2 2.9 2.6 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 DUF2203 PF09969.9 gi|389846728|ref|YP_006348967.1| - 0.16 12.7 16.9 0.41 11.4 4.7 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Spc24 PF08286.11 gi|389846728|ref|YP_006348967.1| - 0.17 12.1 36.7 4.6 7.5 5.5 4.0 1 1 3 4 4 4 0 Spc24 subunit of Ndc80 TarH PF02203.15 gi|389846728|ref|YP_006348967.1| - 0.18 11.7 15.0 0.24 11.3 5.0 2.5 1 1 1 2 2 2 0 Tar ligand binding domain homologue CC2-LZ PF16516.5 gi|389846728|ref|YP_006348967.1| - 0.18 12.2 23.9 2 8.8 3.8 3.2 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator AKNA PF12443.8 gi|389846728|ref|YP_006348967.1| - 0.18 12.4 18.9 0.24 12.1 0.1 3.5 1 1 2 3 3 3 0 AT-hook-containing transcription factor HAUS-augmin3 PF14932.6 gi|389846728|ref|YP_006348967.1| - 0.19 11.2 27.7 0.17 11.4 15.5 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 LXG PF04740.12 gi|389846728|ref|YP_006348967.1| - 0.21 11.3 25.9 62 3.2 25.9 2.8 1 1 0 1 1 1 0 LXG domain of WXG superfamily Csm1_N PF18504.1 gi|389846728|ref|YP_006348967.1| - 0.21 12.0 33.3 0.31 11.4 2.3 4.3 1 1 4 5 5 4 0 Csm1 N-terminal domain COG5 PF10392.9 gi|389846728|ref|YP_006348967.1| - 0.21 11.7 17.9 3.1 8.0 7.6 2.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 FAM76 PF16046.5 gi|389846728|ref|YP_006348967.1| - 0.23 10.8 17.7 0.36 10.1 17.7 1.3 1 0 0 1 1 1 0 FAM76 protein ABC_tran_CTD PF16326.5 gi|389846728|ref|YP_006348967.1| - 0.23 11.7 30.2 1.1 9.5 8.3 3.4 1 1 2 3 3 3 0 ABC transporter C-terminal domain BORCS8 PF10167.9 gi|389846728|ref|YP_006348967.1| - 0.24 11.3 8.5 0.86 9.6 0.1 3.3 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 8 T3SSipB PF16535.5 gi|389846728|ref|YP_006348967.1| - 0.25 11.8 19.6 9.6 6.7 19.5 2.5 1 1 0 1 1 1 0 Type III cell invasion protein SipB Occludin_ELL PF07303.13 gi|389846728|ref|YP_006348967.1| - 0.26 12.0 14.2 12 6.7 4.8 3.0 1 1 1 2 2 2 0 Occludin homology domain Sec8_exocyst PF04048.14 gi|389846728|ref|YP_006348967.1| - 0.27 11.1 21.0 2.5 8.0 13.5 3.4 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Flagellin_C PF00700.21 gi|389846728|ref|YP_006348967.1| - 0.27 11.6 16.9 0.48 10.8 1.8 3.4 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region DUF641 PF04859.12 gi|389846728|ref|YP_006348967.1| - 0.28 11.5 21.7 3.9 7.8 3.9 3.0 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Ax_dynein_light PF10211.9 gi|389846728|ref|YP_006348967.1| - 0.28 11.1 29.6 0.26 11.2 2.9 3.6 1 1 3 4 4 4 0 Axonemal dynein light chain Lipoprotein_7 PF01540.16 gi|389846728|ref|YP_006348967.1| - 0.3 10.3 16.0 0.96 8.7 16.0 1.7 1 1 0 1 1 1 0 Adhesin lipoprotein RPW8 PF05659.11 gi|389846728|ref|YP_006348967.1| - 0.3 10.8 16.6 4.4 7.0 3.2 3.3 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Allexi_40kDa PF05549.11 gi|389846728|ref|YP_006348967.1| - 0.33 10.4 19.3 0.075 12.5 4.4 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein HR1 PF02185.16 gi|389846728|ref|YP_006348967.1| - 0.33 11.1 28.5 0.23 11.6 3.5 3.5 1 1 1 3 3 3 0 Hr1 repeat YkyA PF10368.9 gi|389846728|ref|YP_006348967.1| - 0.34 10.6 26.9 17 5.0 27.2 2.5 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein ArAE_2_N PF10337.9 gi|389846728|ref|YP_006348967.1| - 0.36 9.8 7.2 0.73 8.8 7.1 1.3 1 1 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal DivIVA PF05103.13 gi|389846728|ref|YP_006348967.1| - 0.4 10.8 24.8 6.4 6.9 4.9 3.0 1 1 1 2 2 2 0 DivIVA protein bZIP_2 PF07716.15 gi|389846728|ref|YP_006348967.1| - 0.42 10.7 29.4 0.18 11.9 0.8 4.8 2 1 2 4 4 3 0 Basic region leucine zipper Fzo_mitofusin PF04799.13 gi|389846728|ref|YP_006348967.1| - 0.44 10.1 22.3 3.2 7.3 1.2 3.2 1 1 2 3 3 3 0 fzo-like conserved region DUF2353 PF09789.9 gi|389846728|ref|YP_006348967.1| - 0.44 9.9 27.1 9.4 5.5 27.3 2.0 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) FTA4 PF13093.6 gi|389846728|ref|YP_006348967.1| - 0.45 10.4 22.8 0.11 12.4 9.7 2.1 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 AI-2E_transport PF01594.16 gi|389846728|ref|YP_006348967.1| - 0.47 9.6 2.8 0.75 8.9 0.2 2.0 1 1 0 2 2 2 0 AI-2E family transporter Fmp27_WPPW PF10359.9 gi|389846728|ref|YP_006348967.1| - 0.48 9.2 26.7 0.39 9.5 8.1 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Nup54 PF13874.6 gi|389846728|ref|YP_006348967.1| - 0.49 10.5 19.3 6.2 6.9 13.2 2.4 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 FliD_N PF02465.18 gi|389846728|ref|YP_006348967.1| - 0.52 11.1 23.6 1.8 9.3 1.1 3.6 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus MIP-T3_C PF17749.1 gi|389846728|ref|YP_006348967.1| - 0.56 10.2 24.8 6.4 6.7 5.8 3.0 1 1 2 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region SOGA PF11365.8 gi|389846728|ref|YP_006348967.1| - 0.6 11.3 19.7 9.4 7.4 13.0 3.2 1 1 0 2 2 2 0 Protein SOGA LRRFIP PF09738.9 gi|389846728|ref|YP_006348967.1| - 0.61 9.5 31.0 2.3 7.6 6.8 3.0 1 1 2 3 3 3 0 LRRFIP family CEP209_CC5 PF16574.5 gi|389846728|ref|YP_006348967.1| - 0.61 10.2 28.4 0.065 13.4 16.0 2.1 1 1 1 2 2 2 0 Coiled-coil region of centrosome protein CE290 Vps54_N PF10475.9 gi|389846728|ref|YP_006348967.1| - 0.65 9.2 15.7 0.67 9.2 6.8 2.3 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex Rho_Binding PF08912.11 gi|389846728|ref|YP_006348967.1| - 0.73 10.7 33.2 5.3 7.9 7.2 4.0 1 1 2 3 3 2 0 Rho Binding CENP-Q PF13094.6 gi|389846728|ref|YP_006348967.1| - 0.74 10.0 34.9 0.41 10.8 6.3 3.0 1 1 2 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit HMMR_C PF15908.5 gi|389846728|ref|YP_006348967.1| - 0.78 10.0 17.4 4 7.7 0.3 3.0 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor C-terminal COG6 PF06419.11 gi|389846728|ref|YP_006348967.1| - 0.82 7.8 23.1 0.11 10.7 8.3 2.8 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 Myco_arth_vir_N PF09610.10 gi|389846728|ref|YP_006348967.1| - 0.86 9.7 4.4 1.4 9.1 4.4 1.3 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) kleA_kleC PF17383.2 gi|389846728|ref|YP_006348967.1| - 0.89 9.9 12.4 11 6.4 0.5 3.7 1 1 3 4 4 4 0 Uncharacterized KorC regulated protein A Cep57_CLD_2 PF14197.6 gi|389846728|ref|YP_006348967.1| - 0.89 9.7 40.4 0.83 9.8 9.7 3.2 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 V_ATPase_I PF01496.19 gi|389846728|ref|YP_006348967.1| - 0.91 7.4 19.3 1.7 6.5 19.3 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4472 PF14739.6 gi|389846728|ref|YP_006348967.1| - 1 10.1 25.4 1.3 9.8 7.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) KfrA_N PF11740.8 gi|389846728|ref|YP_006348967.1| - 1 10.1 25.4 4.7 7.9 13.6 3.3 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term PEARLI-4 PF05278.12 gi|389846728|ref|YP_006348967.1| - 1 8.9 14.2 0.22 11.1 3.7 2.6 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) YscO-like PF16789.5 gi|389846728|ref|YP_006348967.1| - 1 9.3 21.3 2.7 8.0 3.7 2.2 1 1 1 2 2 2 0 YscO-like protein MtrB PF05440.12 gi|389846728|ref|YP_006348967.1| - 1.1 9.8 7.5 1.8 9.0 0.6 3.3 1 1 3 4 4 3 0 Tetrahydromethanopterin S-methyltransferase subunit B Ly49 PF08391.10 gi|389846728|ref|YP_006348967.1| - 1.1 9.7 15.8 0.053 13.9 4.5 2.2 1 1 1 2 2 1 0 Ly49-like protein, N-terminal region RasGAP_C PF03836.15 gi|389846728|ref|YP_006348967.1| - 1.1 9.4 22.6 3.7 7.7 4.3 3.2 1 1 2 3 3 3 0 RasGAP C-terminus DUF4140 PF13600.6 gi|389846728|ref|YP_006348967.1| - 1.1 9.7 28.5 2.4 8.7 3.2 4.1 1 1 1 2 2 1 0 N-terminal domain of unknown function (DUF4140) DASH_Dam1 PF08653.10 gi|389846728|ref|YP_006348967.1| - 1.2 9.0 23.1 2.6 7.9 0.2 4.9 3 2 2 5 5 5 0 DASH complex subunit Dam1 DUF1515 PF07439.11 gi|389846728|ref|YP_006348967.1| - 1.2 9.2 14.3 3.4 7.7 5.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) NAD_binding_6 PF08030.12 gi|389846728|ref|YP_006348967.1| - 1.2 9.3 6.0 1.9 8.6 6.0 1.4 1 1 0 1 1 1 0 Ferric reductase NAD binding domain Sulfatase_C PF14707.6 gi|389846728|ref|YP_006348967.1| - 1.6 9.5 9.5 5.2 7.8 0.5 2.8 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase TraC PF07820.12 gi|389846728|ref|YP_006348967.1| - 1.6 9.1 11.8 0.68 10.3 0.5 3.7 3 1 0 3 3 3 0 TraC-like protein Cortex-I_coil PF09304.10 gi|389846728|ref|YP_006348967.1| - 1.7 8.9 27.8 1.8e+04 -7.5 27.8 3.0 1 1 0 1 1 0 0 Cortexillin I, coiled coil Lectin_N PF03954.14 gi|389846728|ref|YP_006348967.1| - 1.8 8.3 29.0 2.8 7.7 7.9 3.6 1 1 1 3 3 2 0 Hepatic lectin, N-terminal domain End3 PF12761.7 gi|389846728|ref|YP_006348967.1| - 1.8 8.7 29.9 0.19 11.9 3.2 3.3 1 1 1 2 2 1 0 Actin cytoskeleton-regulatory complex protein END3 YlqD PF11068.8 gi|389846728|ref|YP_006348967.1| - 1.8 8.9 25.5 54 4.2 9.9 2.7 1 1 1 2 2 1 0 YlqD protein DUF5320 PF17253.2 gi|389846728|ref|YP_006348967.1| - 1.9 9.6 17.3 1.7 9.7 0.3 3.7 2 1 0 2 2 1 0 Family of unknown function (DUF5320) DUF4665 PF15679.5 gi|389846728|ref|YP_006348967.1| - 2.1 9.0 14.1 0.56 10.9 6.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4665) Phage_GPO PF05929.11 gi|389846728|ref|YP_006348967.1| - 2.1 7.9 22.9 3.2 7.3 5.4 2.2 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase HALZ PF02183.18 gi|389846728|ref|YP_006348967.1| - 2.2 8.6 23.2 2.1 8.6 3.0 3.8 2 2 2 4 4 3 0 Homeobox associated leucine zipper Tho2 PF11262.8 gi|389846728|ref|YP_006348967.1| - 2.4 7.3 21.9 1.8 7.7 5.7 2.1 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DUF4164 PF13747.6 gi|389846728|ref|YP_006348967.1| - 2.5 8.5 28.4 0.75 10.1 14.0 2.7 1 1 2 3 3 2 0 Domain of unknown function (DUF4164) NEMP PF10225.9 gi|389846728|ref|YP_006348967.1| - 2.5 7.7 5.2 5 6.7 0.4 2.2 1 1 0 2 2 2 0 NEMP family YojJ PF10372.9 gi|389846728|ref|YP_006348967.1| - 2.9 8.0 15.3 5.1 7.3 2.4 3.8 1 1 3 4 4 4 0 Bacterial membrane-spanning protein N-terminus Med2 PF11214.8 gi|389846728|ref|YP_006348967.1| - 3 8.0 21.6 41 4.4 0.2 3.2 1 1 1 2 2 2 0 Mediator complex subunit 2 Prp19 PF08606.11 gi|389846728|ref|YP_006348967.1| - 3.1 7.8 17.0 0.14 12.2 2.4 3.5 1 1 1 3 3 3 0 Prp19/Pso4-like TraF_2 PF13729.6 gi|389846728|ref|YP_006348967.1| - 3.3 7.0 19.3 0.19 11.1 6.5 2.6 1 1 2 3 3 3 0 F plasmid transfer operon, TraF, protein Vps53_N PF04100.12 gi|389846728|ref|YP_006348967.1| - 3.3 6.6 21.5 3.2 6.6 13.8 2.2 1 1 1 2 2 2 0 Vps53-like, N-terminal HAUS6_N PF14661.6 gi|389846728|ref|YP_006348967.1| - 3.5 7.1 20.4 3.3e+03 -2.6 20.4 2.2 1 1 0 1 1 0 0 HAUS augmin-like complex subunit 6 N-terminus UPF0449 PF15136.6 gi|389846728|ref|YP_006348967.1| - 3.6 8.1 28.3 2.2 8.8 7.5 3.9 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 LMBR1 PF04791.16 gi|389846728|ref|YP_006348967.1| - 4.2 6.2 18.1 11 4.8 18.1 1.6 1 1 0 1 1 1 0 LMBR1-like membrane protein Baculo_F PF12259.8 gi|389846728|ref|YP_006348967.1| - 4.3 5.7 12.7 5.9 5.3 12.7 1.2 1 0 0 1 1 1 0 Baculovirus F protein Cauli_AT PF03233.13 gi|389846728|ref|YP_006348967.1| - 4.3 7.2 19.0 1.7 8.6 9.1 2.2 1 1 1 2 2 2 0 Aphid transmission protein YPEB PF14620.6 gi|389846728|ref|YP_006348967.1| - 4.3 6.6 19.2 0.29 10.4 6.7 2.4 1 1 1 2 2 1 0 YpeB sporulation CtIP_N PF10482.9 gi|389846728|ref|YP_006348967.1| - 4.3 7.4 23.1 20 5.2 6.6 3.2 1 1 1 2 2 1 0 Tumour-suppressor protein CtIP N-terminal domain CemA PF03040.14 gi|389846728|ref|YP_006348967.1| - 4.4 7.2 8.8 0.2 11.5 1.7 1.9 1 1 1 2 2 1 0 CemA family CASP_C PF08172.12 gi|389846728|ref|YP_006348967.1| - 4.6 6.5 27.0 10 5.4 26.7 1.9 1 1 0 1 1 1 0 CASP C terminal zf-C4H2 PF10146.9 gi|389846728|ref|YP_006348967.1| - 4.9 7.4 21.7 6.7 7.0 16.3 1.9 1 1 1 2 2 2 0 Zinc finger-containing protein DUF3958 PF13125.6 gi|389846728|ref|YP_006348967.1| - 5.1 7.4 28.6 3 8.1 7.8 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3958) OEP PF02321.18 gi|389846728|ref|YP_006348967.1| - 5.4 6.8 24.7 13 5.6 11.3 2.8 1 1 1 2 2 2 0 Outer membrane efflux protein TSC22 PF01166.18 gi|389846728|ref|YP_006348967.1| - 5.8 7.3 29.8 3.7 7.9 5.7 4.9 1 1 4 5 5 4 0 TSC-22/dip/bun family Tup_N PF08581.10 gi|389846728|ref|YP_006348967.1| - 5.9 7.3 26.3 9.8 6.6 3.9 3.3 1 1 2 3 3 3 0 Tup N-terminal DUF489 PF04356.12 gi|389846728|ref|YP_006348967.1| - 6.5 6.7 12.6 12 5.9 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Tmemb_cc2 PF10267.9 gi|389846728|ref|YP_006348967.1| - 6.7 5.7 25.6 61 2.6 25.6 2.1 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein PCRF PF03462.18 gi|389846728|ref|YP_006348967.1| - 6.8 6.5 24.4 6.8 6.5 13.4 2.1 1 1 1 2 2 2 0 PCRF domain GTP-bdg_M PF16360.5 gi|389846728|ref|YP_006348967.1| - 6.9 7.3 16.1 75 4.0 1.2 4.0 1 1 2 3 3 3 0 GTP-binding GTPase Middle Region CREPT PF16566.5 gi|389846728|ref|YP_006348967.1| - 7.6 6.7 20.9 16 5.6 8.8 2.4 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour bZIP_Maf PF03131.17 gi|389846728|ref|YP_006348967.1| - 8 7.1 26.9 4.4 7.9 3.9 3.6 1 1 2 3 3 3 0 bZIP Maf transcription factor VasL PF12486.8 gi|389846728|ref|YP_006348967.1| - 8 6.3 18.1 0.64 9.9 1.7 3.1 1 1 1 3 3 3 0 Type VI secretion system, EvfB, or VasL Dzip-like_N PF13815.6 gi|389846728|ref|YP_006348967.1| - 8.5 6.4 25.3 1.7 8.7 5.2 3.3 1 1 1 2 2 1 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Tweety PF04906.13 gi|389846728|ref|YP_006348967.1| - 8.8 4.9 11.6 6.1 5.4 3.6 2.2 1 1 1 2 2 2 0 Tweety Sec20 PF03908.13 gi|389846728|ref|YP_006348967.1| - 9 6.3 17.2 3.2 7.7 2.1 3.0 1 1 1 2 2 2 0 Sec20 VWA PF00092.28 gi|389846729|ref|YP_006348968.1| - 1.3e-18 67.8 0.0 6e-16 59.2 0.0 2.9 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|389846729|ref|YP_006348968.1| - 3e-13 50.3 0.1 1.5e-11 44.9 0.0 2.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|389846729|ref|YP_006348968.1| - 6.2e-10 39.2 0.0 2.2e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|389846729|ref|YP_006348968.1| - 2.3e-06 27.2 0.1 0.00017 21.0 0.0 2.9 3 0 0 3 3 3 1 VWA domain containing CoxE-like protein Big_3_5 PF16640.5 gi|389846729|ref|YP_006348968.1| - 3e-06 27.3 9.8 3.2e-06 27.2 0.2 3.8 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 3) LytR_C PF13399.6 gi|389846729|ref|YP_006348968.1| - 0.034 15.1 4.9 4.3 8.4 0.1 3.3 3 0 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator SseB_C PF14581.6 gi|389846729|ref|YP_006348968.1| - 0.044 13.9 0.1 1.4 9.0 0.0 2.8 3 0 0 3 3 3 0 SseB protein C-terminal domain GATase1_like PF07090.11 gi|389846729|ref|YP_006348968.1| - 0.14 11.6 0.1 6.8 6.0 0.0 2.4 2 0 0 2 2 2 0 Putative glutamine amidotransferase DUF4131 PF13567.6 gi|389846729|ref|YP_006348968.1| - 0.69 9.5 2.8 0.59 9.8 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) BatA PF07584.11 gi|389846730|ref|YP_006348969.1| - 1.9e-12 47.4 8.1 1.9e-12 47.4 8.1 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|389846730|ref|YP_006348969.1| - 1.2e-06 29.1 1.5 2.6e-06 28.0 1.5 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Na_H_antiporter PF03553.14 gi|389846731|ref|YP_006348970.1| - 5.1e-59 200.0 42.7 5.6e-53 180.1 25.2 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family bPH_2 PF03703.14 gi|389846733|ref|YP_006348972.1| - 5.4e-13 48.9 0.1 8.2e-13 48.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|389846734|ref|YP_006348973.1| - 9.1e-14 51.4 0.1 2e-13 50.3 0.0 1.6 2 0 0 2 2 2 1 Bacterial PH domain AsnC_trans_reg PF01037.21 gi|389846735|ref|YP_006348974.1| - 3e-16 59.2 1.5 3.3e-16 59.0 0.3 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain DprA_WH PF17782.1 gi|389846735|ref|YP_006348974.1| - 9.9e-08 32.0 0.9 1.7e-07 31.2 0.9 1.4 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 gi|389846735|ref|YP_006348974.1| - 2.2e-06 27.1 0.0 4e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|389846735|ref|YP_006348974.1| - 6.6e-06 25.9 1.0 6.6e-06 25.9 1.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|389846735|ref|YP_006348974.1| - 0.00024 20.9 0.2 0.00045 20.1 0.2 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389846735|ref|YP_006348974.1| - 0.0049 16.8 0.0 0.0087 16.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389846735|ref|YP_006348974.1| - 0.0062 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|389846735|ref|YP_006348974.1| - 0.011 15.3 0.5 0.017 14.7 0.5 1.3 1 0 0 1 1 1 0 winged helix-turn-helix TrmB PF01978.19 gi|389846735|ref|YP_006348974.1| - 0.014 15.3 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|389846735|ref|YP_006348974.1| - 0.015 16.0 0.0 0.03 15.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal FeoC PF09012.10 gi|389846735|ref|YP_006348974.1| - 0.032 14.3 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.21 gi|389846735|ref|YP_006348974.1| - 0.058 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|389846735|ref|YP_006348974.1| - 0.11 12.3 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF5633 PF18656.1 gi|389846735|ref|YP_006348974.1| - 0.15 12.0 0.1 0.27 11.2 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5633) AsnC_trans_reg2 PF17805.1 gi|389846735|ref|YP_006348974.1| - 0.17 12.1 0.5 0.45 10.7 0.2 2.0 2 0 0 2 2 2 0 AsnC-like ligand binding domain HTH_36 PF13730.6 gi|389846735|ref|YP_006348974.1| - 0.2 11.6 0.0 0.39 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_1_2 PF00155.21 gi|389846736|ref|YP_006348975.1| - 3e-72 243.8 0.0 3.4e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|389846736|ref|YP_006348975.1| - 0.00042 19.7 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|389846736|ref|YP_006348975.1| - 0.00086 18.4 0.0 0.0015 17.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|389846736|ref|YP_006348975.1| - 0.015 14.6 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Usp PF00582.26 gi|389846737|ref|YP_006348976.1| - 7.9e-32 110.7 1.1 9e-32 110.5 1.1 1.0 1 0 0 1 1 1 1 Universal stress protein family PAXNEB PF05625.11 gi|389846738|ref|YP_006348977.1| - 0.028 13.6 0.0 0.081 12.0 0.0 1.7 2 0 0 2 2 2 0 PAXNEB protein HalX PF08663.10 gi|389846740|ref|YP_006348979.1| - 3.6e-23 81.7 8.1 3.6e-23 81.7 8.1 2.3 2 1 0 2 2 2 1 HalX domain Response_reg PF00072.24 gi|389846740|ref|YP_006348979.1| - 2.1e-19 69.7 0.1 3.7e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain FTA4 PF13093.6 gi|389846740|ref|YP_006348979.1| - 0.038 13.9 0.0 0.038 13.9 0.0 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Regulator_TrmB PF11495.8 gi|662859429|ref|YP_006348980.2| - 5.4e-65 218.8 0.1 6.9e-65 218.5 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|662859429|ref|YP_006348980.2| - 1.8e-14 53.3 0.0 3.2e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|662859429|ref|YP_006348980.2| - 0.00071 19.4 0.1 0.0019 18.0 0.1 1.8 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|662859429|ref|YP_006348980.2| - 0.0013 18.7 0.0 0.0029 17.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|662859429|ref|YP_006348980.2| - 0.025 14.4 0.0 0.088 12.6 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|662859429|ref|YP_006348980.2| - 0.037 13.6 0.1 0.26 10.9 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|662859429|ref|YP_006348980.2| - 0.12 12.3 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|662859429|ref|YP_006348980.2| - 0.16 12.5 0.0 0.84 10.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain adh_short_C2 PF13561.6 gi|389846742|ref|YP_006348981.1| - 2.4e-68 230.2 1.0 2.8e-68 229.9 1.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389846742|ref|YP_006348981.1| - 1.7e-57 194.1 1.2 2e-57 193.8 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389846742|ref|YP_006348981.1| - 2.2e-21 76.6 0.2 2.6e-21 76.3 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389846742|ref|YP_006348981.1| - 0.0052 16.3 0.1 0.017 14.6 0.1 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|389846742|ref|YP_006348981.1| - 0.09 12.1 0.6 0.94 8.8 0.1 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IMPDH PF00478.25 gi|389846743|ref|YP_006348982.1| - 7.5e-144 479.0 8.6 8.5e-144 478.8 8.6 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|389846743|ref|YP_006348982.1| - 6.6e-22 77.7 8.9 3e-11 43.6 0.9 3.2 3 0 0 3 3 3 2 CBS domain NMO PF03060.15 gi|389846743|ref|YP_006348982.1| - 2.1e-12 47.1 2.5 2.5e-07 30.4 0.8 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|389846743|ref|YP_006348982.1| - 3.5e-10 39.4 2.5 5.8e-10 38.7 2.5 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase DHO_dh PF01180.21 gi|389846743|ref|YP_006348982.1| - 1.9e-05 24.0 1.0 4.4e-05 22.8 1.0 1.6 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|389846743|ref|YP_006348982.1| - 2.6e-05 23.7 5.6 0.00011 21.7 1.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|389846743|ref|YP_006348982.1| - 3.1e-05 23.6 2.8 8.3e-05 22.1 2.8 1.7 1 1 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|389846743|ref|YP_006348982.1| - 4.9e-05 22.6 1.9 0.0001 21.6 1.9 1.5 1 0 0 1 1 1 1 Conserved region in glutamate synthase Dus PF01207.17 gi|389846743|ref|YP_006348982.1| - 0.00082 18.6 0.6 0.0017 17.5 0.3 1.6 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) PEP_mutase PF13714.6 gi|389846743|ref|YP_006348982.1| - 0.013 14.9 3.5 0.28 10.6 0.1 3.1 3 0 0 3 3 3 0 Phosphoenolpyruvate phosphomutase G3P_antiterm PF04309.12 gi|389846743|ref|YP_006348982.1| - 0.027 13.9 0.4 0.093 12.1 0.1 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator ADH_zinc_N PF00107.26 gi|389846743|ref|YP_006348982.1| - 0.059 13.4 2.1 0.97 9.4 0.3 2.7 1 1 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_24 PF13578.6 gi|389846743|ref|YP_006348982.1| - 0.11 13.5 0.3 0.28 12.2 0.3 1.7 1 0 0 1 1 1 0 Methyltransferase domain UPF0047 PF01894.17 gi|389846746|ref|YP_006348985.1| - 1.8e-33 115.1 0.0 2.1e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 zf-Mss51 PF13824.6 gi|662859431|ref|YP_006348986.2| - 0.0072 16.4 1.0 0.1 12.7 0.0 2.1 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.7 gi|662859431|ref|YP_006348986.2| - 0.02 14.9 0.3 0.026 14.5 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|662859431|ref|YP_006348986.2| - 0.028 14.5 3.0 0.75 10.0 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain UPF1_Zn_bind PF09416.10 gi|662859431|ref|YP_006348986.2| - 0.061 13.3 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) DiS_P_DiS PF06750.13 gi|662859431|ref|YP_006348986.2| - 0.085 13.0 0.0 0.093 12.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Rubredoxin PF00301.20 gi|662859431|ref|YP_006348986.2| - 0.11 12.6 4.0 3 7.9 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin zf-C2H2 PF00096.26 gi|662859431|ref|YP_006348986.2| - 0.11 13.0 1.8 6.2 7.5 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_2 PF03107.16 gi|662859431|ref|YP_006348986.2| - 0.16 12.3 2.0 0.42 11.0 2.0 1.6 1 1 0 1 1 1 0 C1 domain zf-H2C2_2 PF13465.6 gi|662859431|ref|YP_006348986.2| - 0.17 12.4 0.6 10 6.7 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.11 gi|662859431|ref|YP_006348986.2| - 0.24 11.3 1.8 1.3 9.0 2.2 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1610 PF07754.11 gi|662859431|ref|YP_006348986.2| - 0.31 11.1 0.4 0.31 11.1 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Pox_A11 PF05061.13 gi|389846748|ref|YP_006348987.1| - 0.013 14.8 0.0 0.017 14.5 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A11 Protein Dam PF05869.11 gi|389846750|ref|YP_006348989.1| - 3.2e-13 49.6 0.0 3.7e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) HTH_AsnC-type PF13404.6 gi|389846751|ref|YP_006348990.1| - 0.053 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|389846751|ref|YP_006348990.1| - 0.058 14.0 2.8 22 5.8 3.5 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.6 gi|389846751|ref|YP_006348990.1| - 0.18 11.4 0.0 0.39 10.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2371 PF10177.9 gi|389846752|ref|YP_006348991.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) gpUL132 PF11359.8 gi|389846753|ref|YP_006348992.1| - 0.12 11.9 0.5 0.14 11.7 0.5 1.0 1 0 0 1 1 1 0 Glycoprotein UL132 Phage_integrase PF00589.22 gi|389846754|ref|YP_006348993.1| - 0.0058 16.4 0.0 0.014 15.2 0.0 1.6 1 1 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.7 gi|389846754|ref|YP_006348993.1| - 0.14 12.2 0.1 0.27 11.3 0.1 1.5 1 1 0 1 1 1 0 Integrase DUF1148 PF06618.11 gi|389846758|ref|YP_006348997.1| - 0.02 15.0 0.2 0.04 14.1 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1148) DUF202 PF02656.15 gi|389846758|ref|YP_006348997.1| - 0.26 11.8 3.0 0.42 11.1 3.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Methyltransf_11 PF08241.12 gi|389846759|ref|YP_006348998.1| - 3.1e-07 31.0 0.0 8e-07 29.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846759|ref|YP_006348998.1| - 8.9e-06 25.6 0.0 1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846759|ref|YP_006348998.1| - 0.0005 19.9 0.0 0.00074 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846759|ref|YP_006348998.1| - 0.0042 17.8 0.0 0.0066 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389846759|ref|YP_006348998.1| - 0.0057 17.3 0.0 0.013 16.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DUF4279 PF14106.6 gi|389846759|ref|YP_006348998.1| - 0.08 13.1 0.0 0.24 11.6 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) Ubie_methyltran PF01209.18 gi|389846759|ref|YP_006348998.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Zot PF05707.12 gi|389846760|ref|YP_006348999.1| - 0.00023 20.9 0.1 0.0018 18.0 0.1 2.0 1 1 1 2 2 2 1 Zonular occludens toxin (Zot) tRNA-synt_1b PF00579.25 gi|389846760|ref|YP_006348999.1| - 0.014 14.7 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) AAA PF00004.29 gi|389846760|ref|YP_006348999.1| - 0.069 13.6 0.0 0.78 10.2 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|389846760|ref|YP_006348999.1| - 0.1 12.9 0.0 1.4 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|389846760|ref|YP_006348999.1| - 0.1 12.6 0.0 1.6 8.7 0.0 2.4 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) YcgR_2 PF12945.7 gi|389846762|ref|YP_006349001.1| - 0.17 12.0 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Flagellar protein YcgR DUF1206 PF06724.11 gi|389846763|ref|YP_006349002.1| - 0.00067 19.7 4.6 0.00087 19.3 3.4 1.9 2 0 0 2 2 2 1 Domain of Unknown Function (DUF1206) DUF2460 PF09343.10 gi|389846764|ref|YP_006349003.1| - 0.011 15.2 0.1 0.015 14.8 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) Rib PF08428.10 gi|389846764|ref|YP_006349003.1| - 0.35 10.9 2.9 1.4 8.9 2.9 2.0 1 1 0 1 1 1 0 Rib/alpha-like repeat Cytomega_UL20A PF05984.12 gi|389846764|ref|YP_006349003.1| - 1.1 9.6 4.6 1.3 9.4 2.1 2.1 1 1 0 2 2 2 0 Cytomegalovirus UL20A protein DUF805 PF05656.14 gi|389846768|ref|YP_006349007.1| - 0.082 13.3 4.4 0.12 12.8 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF805) CinA_KH PF18146.1 gi|389846769|ref|YP_006349008.1| - 0.16 12.1 3.4 0.5 10.6 0.0 3.2 3 0 0 3 3 3 0 Damage-inducible protein CinA KH domain CBM_4_9 PF02018.17 gi|389846771|ref|YP_006349010.1| - 0.006 16.8 0.6 0.012 15.9 0.6 1.5 1 0 0 1 1 1 1 Carbohydrate binding domain Big_7 PF17957.1 gi|389846772|ref|YP_006349011.1| - 0.0011 19.7 6.5 0.0011 19.7 6.5 5.3 5 2 1 6 6 6 2 Bacterial Ig domain CE2_N PF17996.1 gi|389846772|ref|YP_006349011.1| - 0.019 15.0 1.8 0.16 12.0 0.2 3.1 3 0 0 3 3 3 0 Carbohydrate esterase 2 N-terminal CBM60 PF16841.5 gi|389846772|ref|YP_006349011.1| - 2.5 8.6 8.1 6.8 7.2 0.2 3.5 3 0 0 3 3 3 0 Ca-dependent carbohydrate-binding module xylan-binding Chitin_synth_2 PF03142.15 gi|389846773|ref|YP_006349012.1| - 0.69 8.5 3.8 0.79 8.3 3.8 1.0 1 0 0 1 1 1 0 Chitin synthase DUF3267 PF11667.8 gi|389846776|ref|YP_006349015.1| - 0.0028 17.9 2.6 0.0051 17.1 2.6 1.5 1 1 0 1 1 1 1 Putative zincin peptidase Epiglycanin_C PF14654.6 gi|389846776|ref|YP_006349015.1| - 0.087 12.9 0.4 0.14 12.3 0.4 1.4 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region RseC_MucC PF04246.12 gi|389846776|ref|YP_006349015.1| - 0.088 12.8 0.7 0.1 12.6 0.7 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC PQQ_3 PF13570.6 gi|389846778|ref|YP_006349017.1| - 4e-52 173.5 29.1 1.6e-08 34.8 1.9 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|389846778|ref|YP_006349017.1| - 3.7e-49 167.5 21.8 1.7e-22 80.2 6.7 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|389846778|ref|YP_006349017.1| - 5.2e-35 117.7 12.0 1.9e-10 40.2 0.7 8.4 8 0 0 8 8 8 7 PQQ enzyme repeat AAA_22 PF13401.6 gi|389846779|ref|YP_006349018.1| - 4.2e-10 40.0 0.0 5.2e-09 36.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389846779|ref|YP_006349018.1| - 3.4e-09 37.3 2.5 8.1e-08 32.8 0.7 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389846779|ref|YP_006349018.1| - 2.3e-05 24.8 0.0 4.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|389846779|ref|YP_006349018.1| - 4.7e-05 23.6 0.2 0.00011 22.5 0.2 1.5 1 0 0 1 1 1 1 AAA C-terminal domain AAA_30 PF13604.6 gi|389846779|ref|YP_006349018.1| - 0.00033 20.5 0.0 0.00084 19.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|389846779|ref|YP_006349018.1| - 0.00042 20.8 0.0 0.0012 19.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter RuvB_N PF05496.12 gi|389846779|ref|YP_006349018.1| - 0.00056 19.7 0.1 0.002 17.9 0.0 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|389846779|ref|YP_006349018.1| - 0.00074 20.1 0.0 0.0014 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|389846779|ref|YP_006349018.1| - 0.00079 19.4 0.2 0.0032 17.4 0.0 2.0 2 0 0 2 2 2 1 NTPase NACHT PF05729.12 gi|389846779|ref|YP_006349018.1| - 0.0015 18.4 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 gi|389846779|ref|YP_006349018.1| - 0.0024 18.2 1.9 0.047 14.0 0.7 2.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|389846779|ref|YP_006349018.1| - 0.0032 17.7 0.3 0.019 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|389846779|ref|YP_006349018.1| - 0.0039 17.2 0.0 0.013 15.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|389846779|ref|YP_006349018.1| - 0.004 16.9 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|389846779|ref|YP_006349018.1| - 0.0046 16.9 0.3 0.083 12.8 0.2 2.5 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|389846779|ref|YP_006349018.1| - 0.0092 16.0 0.0 0.02 14.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|389846779|ref|YP_006349018.1| - 0.011 15.0 0.1 0.12 11.6 0.0 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_23 PF13476.6 gi|389846779|ref|YP_006349018.1| - 0.011 16.2 0.1 0.022 15.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|389846779|ref|YP_006349018.1| - 0.017 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain APS_kinase PF01583.20 gi|389846779|ref|YP_006349018.1| - 0.018 14.9 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|389846779|ref|YP_006349018.1| - 0.019 14.7 0.4 0.04 13.6 0.4 1.7 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|389846779|ref|YP_006349018.1| - 0.02 14.6 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase T2SSE PF00437.20 gi|389846779|ref|YP_006349018.1| - 0.026 13.6 0.0 0.054 12.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|389846779|ref|YP_006349018.1| - 0.032 14.0 0.3 0.1 12.3 0.3 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|389846779|ref|YP_006349018.1| - 0.034 14.6 0.0 0.089 13.2 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|389846779|ref|YP_006349018.1| - 0.034 14.4 0.1 0.083 13.1 0.1 1.7 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|389846779|ref|YP_006349018.1| - 0.043 13.8 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|389846779|ref|YP_006349018.1| - 0.044 13.7 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 1 0 RsgA GTPase DUF815 PF05673.13 gi|389846779|ref|YP_006349018.1| - 0.054 12.6 0.1 0.25 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) PRK PF00485.18 gi|389846779|ref|YP_006349018.1| - 0.076 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Myosin_head PF00063.21 gi|389846779|ref|YP_006349018.1| - 0.092 10.9 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Myosin head (motor domain) Zeta_toxin PF06414.12 gi|389846779|ref|YP_006349018.1| - 0.098 11.9 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|389846779|ref|YP_006349018.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|389846779|ref|YP_006349018.1| - 0.16 11.1 0.1 0.28 10.3 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.9 gi|389846779|ref|YP_006349018.1| - 0.17 11.1 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|389846779|ref|YP_006349018.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain DEAD PF00270.29 gi|389846779|ref|YP_006349018.1| - 0.19 11.5 0.5 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase KAP_NTPase PF07693.14 gi|389846779|ref|YP_006349018.1| - 0.44 9.7 1.3 23 4.1 0.0 2.1 1 1 0 2 2 2 0 KAP family P-loop domain UPF0175 PF03683.13 gi|389846781|ref|YP_006349020.1| - 1.4e-14 53.6 0.2 1.7e-14 53.2 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.8 gi|389846782|ref|YP_006349021.1| - 0.00012 21.8 0.0 0.00034 20.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) HTH_27 PF13463.6 gi|389846783|ref|YP_006349022.1| - 0.067 13.7 0.0 0.32 11.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|389846783|ref|YP_006349022.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.7 2 1 0 2 2 2 0 LexA DNA binding domain PilM PF07419.12 gi|389846784|ref|YP_006349023.1| - 0.11 12.7 0.1 0.11 12.6 0.1 1.0 1 0 0 1 1 1 0 PilM HTH_12 PF08461.10 gi|389846787|ref|YP_006349026.1| - 4.2e-07 29.8 0.2 4.8e-07 29.6 0.2 1.1 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|389846787|ref|YP_006349026.1| - 5.4e-06 26.3 0.1 8.4e-06 25.7 0.1 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix FUR PF01475.19 gi|389846787|ref|YP_006349026.1| - 0.00014 22.0 0.0 0.00016 21.8 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family DUF4364 PF14277.6 gi|389846787|ref|YP_006349026.1| - 0.00022 21.0 0.0 0.00024 20.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|389846787|ref|YP_006349026.1| - 0.00056 19.4 0.1 0.0034 16.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|389846787|ref|YP_006349026.1| - 0.0017 18.4 0.1 0.0024 17.9 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389846787|ref|YP_006349026.1| - 0.0055 16.5 0.1 0.057 13.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|389846787|ref|YP_006349026.1| - 0.013 15.2 0.1 0.043 13.6 0.1 1.8 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|389846787|ref|YP_006349026.1| - 0.021 14.7 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|389846787|ref|YP_006349026.1| - 0.026 14.5 0.1 0.038 14.0 0.1 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|389846787|ref|YP_006349026.1| - 0.028 14.7 0.0 0.039 14.3 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator Mrr_N PF14338.6 gi|389846787|ref|YP_006349026.1| - 0.068 13.3 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_27 PF13463.6 gi|389846787|ref|YP_006349026.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain S10_plectin PF03501.15 gi|389846787|ref|YP_006349026.1| - 0.13 12.3 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Plectin/S10 domain YjcQ PF09639.10 gi|389846787|ref|YP_006349026.1| - 0.15 12.3 0.1 0.93 9.7 0.1 1.9 1 1 0 1 1 1 0 YjcQ protein HTH_45 PF14947.6 gi|389846788|ref|YP_006349027.1| - 0.00022 21.1 0.0 0.00029 20.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|389846788|ref|YP_006349027.1| - 0.0013 18.7 0.0 0.0017 18.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|389846788|ref|YP_006349027.1| - 0.0021 18.4 0.0 0.0028 18.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|389846788|ref|YP_006349027.1| - 0.019 15.0 0.0 0.025 14.5 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|389846788|ref|YP_006349027.1| - 0.02 14.7 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 gi|389846788|ref|YP_006349027.1| - 0.026 14.6 0.0 0.043 13.9 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1441 PF07278.11 gi|389846788|ref|YP_006349027.1| - 0.036 14.0 0.0 0.046 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) DUF4393 PF14337.6 gi|389846788|ref|YP_006349027.1| - 0.041 13.7 0.0 0.053 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_24 PF13412.6 gi|389846788|ref|YP_006349027.1| - 0.051 13.1 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|389846788|ref|YP_006349027.1| - 0.054 13.4 0.1 0.093 12.7 0.1 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Mrr_N PF14338.6 gi|389846788|ref|YP_006349027.1| - 0.083 13.0 0.0 0.21 11.7 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain TrmB PF01978.19 gi|389846788|ref|YP_006349027.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|389846788|ref|YP_006349027.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PadR PF03551.14 gi|389846790|ref|YP_006349029.1| - 1.5e-07 31.2 0.1 3.9e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family OrfB_Zn_ribbon PF07282.11 gi|389846790|ref|YP_006349029.1| - 0.025 14.5 0.4 0.049 13.5 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|389846790|ref|YP_006349029.1| - 0.071 12.5 4.4 1.6 8.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|389846790|ref|YP_006349029.1| - 0.11 12.2 3.8 5.5 6.8 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|389846790|ref|YP_006349029.1| - 1.2 9.3 3.0 1.4 9.1 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DinB_2 PF12867.7 gi|389846791|ref|YP_006349030.1| - 5.4e-06 26.9 1.0 0.092 13.3 0.3 2.3 1 1 1 2 2 2 2 DinB superfamily Arena_RNA_pol PF06317.11 gi|389846791|ref|YP_006349030.1| - 0.018 12.3 1.0 0.023 11.9 1.0 1.0 1 0 0 1 1 1 0 Arenavirus RNA polymerase Sirohm_synth_C PF14823.6 gi|389846791|ref|YP_006349030.1| - 0.036 13.7 0.4 9.7 5.9 0.0 3.1 3 1 0 3 3 3 0 Sirohaem biosynthesis protein C-terminal RNR_N PF08343.10 gi|389846791|ref|YP_006349030.1| - 0.048 13.7 1.0 0.1 12.6 1.0 1.5 1 0 0 1 1 1 0 Ribonucleotide reductase N-terminal FliD_N PF02465.18 gi|389846791|ref|YP_006349030.1| - 0.05 14.3 0.2 2 9.1 0.1 2.5 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus DUF2294 PF10057.9 gi|389846791|ref|YP_006349030.1| - 0.064 13.4 0.2 0.55 10.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2294) Lipoprotein_2 PF00921.17 gi|389846791|ref|YP_006349030.1| - 0.084 12.4 1.1 0.11 12.0 1.1 1.2 1 0 0 1 1 1 0 Borrelia lipoprotein NdhM PF10664.9 gi|389846791|ref|YP_006349030.1| - 0.52 10.6 2.6 0.5 10.7 0.9 1.8 2 0 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M Latarcin PF10279.9 gi|389846791|ref|YP_006349030.1| - 2.3 8.7 7.7 1.9 8.9 5.4 2.0 2 0 0 2 2 2 0 Latarcin precursor DELLA PF12041.8 gi|389846792|ref|YP_006349031.1| - 0.02 14.8 0.2 0.87 9.5 0.1 2.3 1 1 1 2 2 2 0 Transcriptional regulator DELLA protein N terminal DUF2067 PF09840.9 gi|389846793|ref|YP_006349032.1| - 0.025 14.2 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) Phage_integrase PF00589.22 gi|662859432|ref|YP_006349033.2| - 1.7e-11 44.2 0.0 1.6e-10 41.0 0.0 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|662859432|ref|YP_006349033.2| - 2.4e-10 40.6 0.8 1.1e-08 35.2 0.2 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|662859432|ref|YP_006349033.2| - 1.3e-07 31.9 0.2 6.4e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|662859432|ref|YP_006349033.2| - 4.9e-06 26.8 0.0 4.1e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_2 PF12834.7 gi|662859432|ref|YP_006349033.2| - 0.011 16.4 0.0 0.026 15.2 0.0 1.7 1 1 0 1 1 1 0 Phage integrase, N-terminal HTH_7 PF02796.15 gi|662859432|ref|YP_006349033.2| - 0.1 12.7 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Phage_int_SAM_6 PF18644.1 gi|662859432|ref|YP_006349033.2| - 0.18 11.8 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 Phage integrase SAM-like domain DZR PF12773.7 gi|389846797|ref|YP_006349036.1| - 0.002 18.1 9.6 0.97 9.5 4.6 3.0 1 1 1 2 2 2 2 Double zinc ribbon zf-CHY PF05495.12 gi|389846797|ref|YP_006349036.1| - 0.031 14.8 2.3 0.065 13.7 2.3 1.6 1 1 0 1 1 1 0 CHY zinc finger DUF1272 PF06906.11 gi|389846797|ref|YP_006349036.1| - 0.074 13.2 7.8 0.45 10.6 1.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|389846797|ref|YP_006349036.1| - 0.13 12.4 8.2 0.74 10.0 4.3 2.8 1 1 1 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|389846797|ref|YP_006349036.1| - 0.17 11.7 0.0 0.17 11.7 0.0 2.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 gi|389846797|ref|YP_006349036.1| - 0.53 10.6 15.3 1.2 9.4 0.4 3.8 1 1 1 2 2 2 0 zinc-ribbon RNHCP PF12647.7 gi|389846797|ref|YP_006349036.1| - 1.1 9.3 6.7 0.14 12.2 1.0 2.2 2 1 1 3 3 3 0 RNHCP domain zf-RING_4 PF14570.6 gi|389846797|ref|YP_006349036.1| - 5.9 6.8 11.8 37 4.2 7.9 2.8 2 1 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-piccolo PF05715.13 gi|389846797|ref|YP_006349036.1| - 6.4 7.0 9.4 1.9 8.7 1.7 2.7 2 1 0 3 3 3 0 Piccolo Zn-finger zf-ACC PF17848.1 gi|389846797|ref|YP_006349036.1| - 9 6.5 8.5 56 3.9 0.1 4.1 4 1 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DUF4968 PF16338.5 gi|389846798|ref|YP_006349037.1| - 2.5e-07 30.9 1.0 1 9.7 0.0 4.7 1 1 1 3 3 3 2 Domain of unknown function (DUF4968) HtaA PF04213.13 gi|389846798|ref|YP_006349037.1| - 0.00054 20.5 0.1 0.52 10.8 0.2 2.9 1 1 1 2 2 2 2 Htaa DUF945 PF06097.11 gi|389846798|ref|YP_006349037.1| - 0.0027 16.9 0.5 0.012 14.8 0.4 1.8 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF945) DUF2807 PF10988.8 gi|389846798|ref|YP_006349037.1| - 0.014 15.2 2.9 2 8.2 0.1 3.1 1 1 1 2 2 2 0 Putative auto-transporter adhesin, head GIN domain PCC_BT PF18140.1 gi|389846798|ref|YP_006349037.1| - 0.077 13.3 1.2 28 5.1 1.3 3.8 1 1 0 1 1 1 0 Propionyl-coenzyme A carboxylase BT domain CS PF04969.16 gi|389846798|ref|YP_006349037.1| - 0.17 12.9 0.8 22 6.2 0.0 3.4 1 1 1 3 3 3 0 CS domain MinE PF03776.14 gi|389846798|ref|YP_006349037.1| - 0.36 10.9 3.6 7.8 6.6 0.1 3.5 2 1 1 3 3 3 0 Septum formation topological specificity factor MinE HSP20 PF00011.21 gi|389846798|ref|YP_006349037.1| - 0.68 10.1 7.6 0.97 9.6 0.5 3.5 1 1 3 4 4 4 0 Hsp20/alpha crystallin family GNAT_like PF18407.1 gi|389846798|ref|YP_006349037.1| - 3.8 7.9 6.8 9.4 6.7 0.1 3.9 4 2 0 4 4 4 0 GCN5-related N-acetyltransferase like domain Copper-bind PF00127.20 gi|389846799|ref|YP_006349038.1| - 5.5e-26 90.9 3.5 5.9e-16 58.7 0.3 3.3 3 2 0 3 3 3 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389846799|ref|YP_006349038.1| - 8.6e-08 32.2 0.0 0.00045 20.3 0.0 2.4 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.20 gi|389846799|ref|YP_006349038.1| - 0.0014 18.4 5.3 0.02 14.7 1.1 2.6 2 0 0 2 2 2 2 PKD domain TAT_signal PF10518.9 gi|389846799|ref|YP_006349038.1| - 0.17 11.8 2.0 0.36 10.7 2.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.7 gi|389846800|ref|YP_006349039.1| - 6.1e-12 45.4 1.3 8.3e-12 45.0 1.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389846800|ref|YP_006349039.1| - 2e-05 24.3 0.2 3e-05 23.7 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389846800|ref|YP_006349039.1| - 0.0001 22.1 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389846800|ref|YP_006349039.1| - 0.00025 20.9 0.1 0.00042 20.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389846800|ref|YP_006349039.1| - 0.028 14.4 0.1 0.044 13.7 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|389846800|ref|YP_006349039.1| - 0.034 14.6 0.1 0.049 14.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4131 PF13567.6 gi|389846801|ref|YP_006349040.1| - 0.074 12.7 4.5 0.074 12.7 4.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) CrgA PF06781.12 gi|389846801|ref|YP_006349040.1| - 1.1 9.3 2.9 3.4 7.8 0.6 2.1 2 0 0 2 2 2 0 Cell division protein CrgA Methyltransf_25 PF13649.6 gi|389846802|ref|YP_006349041.1| - 1.3e-21 77.1 0.0 2.1e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846802|ref|YP_006349041.1| - 8.8e-21 74.4 0.0 1.3e-20 73.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846802|ref|YP_006349041.1| - 1.9e-13 50.5 0.0 4.1e-13 49.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846802|ref|YP_006349041.1| - 7.3e-11 42.1 0.0 8.5e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846802|ref|YP_006349041.1| - 8.3e-10 39.3 0.0 1.5e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389846802|ref|YP_006349041.1| - 6.8e-07 28.9 0.0 2.3e-06 27.1 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|389846802|ref|YP_006349041.1| - 5.7e-05 23.1 0.0 8.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|389846802|ref|YP_006349041.1| - 0.00031 20.1 0.0 0.00043 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|389846802|ref|YP_006349041.1| - 0.0019 17.9 0.0 0.0044 16.7 0.0 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 gi|389846802|ref|YP_006349041.1| - 0.0041 16.6 0.0 0.0049 16.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB DUF5056 PF16479.5 gi|389846802|ref|YP_006349041.1| - 0.0042 17.3 0.0 0.026 14.7 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5056) FtsJ PF01728.19 gi|389846802|ref|YP_006349041.1| - 0.0091 16.1 0.0 0.0094 16.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|389846802|ref|YP_006349041.1| - 0.064 12.2 0.0 0.085 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.18 gi|389846802|ref|YP_006349041.1| - 0.22 10.8 0.1 0.59 9.4 0.0 1.7 2 0 0 2 2 2 0 O-methyltransferase domain PCMT PF01135.19 gi|389846802|ref|YP_006349041.1| - 0.25 11.1 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DHFR_1 PF00186.19 gi|389846803|ref|YP_006349042.1| - 8.2e-40 136.1 0.0 9.5e-40 135.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase MFS_1 PF07690.16 gi|389846804|ref|YP_006349043.1| - 3.5e-51 174.2 51.0 1.5e-28 99.7 17.1 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389846804|ref|YP_006349043.1| - 2.3e-12 46.5 13.3 3.4e-12 45.9 11.5 2.1 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|389846804|ref|YP_006349043.1| - 8.5e-10 38.1 24.2 1.1e-08 34.5 6.3 2.6 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|389846804|ref|YP_006349043.1| - 0.0013 17.2 4.0 0.0013 17.2 4.0 3.2 2 2 1 3 3 3 2 Transmembrane secretion effector Fst_toxin PF13955.6 gi|389846804|ref|YP_006349043.1| - 3.6 7.6 10.9 3.5 7.7 3.6 3.1 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system COX7C PF02935.16 gi|389846804|ref|YP_006349043.1| - 6.9 7.0 5.8 32 4.9 5.8 2.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc HATPase_c PF02518.26 gi|389846805|ref|YP_006349044.1| - 4.1e-10 40.1 0.0 1e-09 38.8 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389846805|ref|YP_006349044.1| - 2.5e-07 30.7 0.1 4.6e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|389846805|ref|YP_006349044.1| - 6.7e-06 25.8 0.3 9.7e-06 25.2 0.3 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|389846805|ref|YP_006349044.1| - 0.0049 16.9 1.1 0.012 15.7 1.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|389846805|ref|YP_006349044.1| - 0.025 14.4 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|389846805|ref|YP_006349044.1| - 0.05 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 GHKL domain Glycos_transf_1 PF00534.20 gi|389846806|ref|YP_006349045.1| - 1.1e-37 129.2 0.0 1.9e-37 128.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389846806|ref|YP_006349045.1| - 5.5e-27 94.8 0.0 2.4e-26 92.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389846806|ref|YP_006349045.1| - 5.6e-10 39.5 2.1 7.9e-08 32.5 0.7 3.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389846806|ref|YP_006349045.1| - 3e-07 31.0 10.4 7.6e-05 23.2 0.2 3.2 2 2 1 3 3 3 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|389846806|ref|YP_006349045.1| - 1.5e-06 28.5 0.0 4.2e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 PTPS PF01242.19 gi|389846807|ref|YP_006349046.1| - 4.5e-20 71.8 0.0 4.9e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.26 gi|389846808|ref|YP_006349047.1| - 5.2e-09 36.2 0.0 9.2e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|389846808|ref|YP_006349047.1| - 0.0032 17.0 0.0 0.0099 15.4 0.0 1.7 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|389846808|ref|YP_006349047.1| - 0.025 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|389846808|ref|YP_006349047.1| - 0.074 14.1 0.0 0.15 13.1 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase GCH_III PF05165.12 gi|662859433|ref|YP_006349048.2| - 7.7e-88 293.9 0.2 9.2e-88 293.7 0.2 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|662859433|ref|YP_006349048.2| - 1.2e-07 32.0 0.1 0.0054 17.0 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|662859433|ref|YP_006349048.2| - 0.00097 19.5 0.0 0.23 11.8 0.0 2.2 2 0 0 2 2 2 2 minimal CRISPR polymerase domain ELF PF03317.13 gi|662859433|ref|YP_006349048.2| - 0.058 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 ELF protein Hydrolase_6 PF13344.6 gi|389846810|ref|YP_006349049.1| - 4.4e-23 81.3 0.0 7.3e-23 80.6 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389846810|ref|YP_006349049.1| - 1.4e-21 76.4 0.2 6.2e-21 74.2 0.1 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|389846810|ref|YP_006349049.1| - 3.7e-07 30.6 1.5 7e-07 29.7 1.5 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389846810|ref|YP_006349049.1| - 0.0002 21.5 0.0 0.0006 19.9 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|389846810|ref|YP_006349049.1| - 0.0032 17.1 0.0 0.025 14.2 0.1 2.1 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase DJ-1_PfpI PF01965.24 gi|389846811|ref|YP_006349050.1| - 1.3e-54 184.4 0.0 1.5e-54 184.2 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|389846811|ref|YP_006349050.1| - 0.00018 21.3 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|389846811|ref|YP_006349050.1| - 0.0015 18.2 0.1 0.02 14.6 0.0 2.1 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|389846811|ref|YP_006349050.1| - 0.0021 17.7 0.0 0.0053 16.4 0.0 1.7 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Catalase_C PF18011.1 gi|389846811|ref|YP_006349050.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain found in long catalases Peptidase_C26 PF07722.13 gi|389846811|ref|YP_006349050.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 OsmC PF02566.19 gi|389846812|ref|YP_006349051.1| - 7.9e-13 48.7 0.0 1e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Lactamase_B_3 PF13483.6 gi|389846813|ref|YP_006349052.1| - 9.3e-19 67.9 0.3 1.5e-18 67.2 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|389846813|ref|YP_006349052.1| - 9.5e-18 64.4 0.9 1.3e-17 64.0 0.9 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|389846813|ref|YP_006349052.1| - 5.5e-08 33.0 6.3 8.2e-08 32.5 6.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FAA_hydrolase PF01557.18 gi|662859434|ref|YP_006349053.2| - 9.1e-66 221.6 0.1 1.1e-65 221.4 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family CbtA PF09490.10 gi|389846815|ref|YP_006349054.1| - 0.0098 15.7 0.8 0.0098 15.7 0.8 1.0 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) Choline_transpo PF04515.12 gi|389846815|ref|YP_006349054.1| - 0.021 14.1 0.5 0.025 13.8 0.5 1.0 1 0 0 1 1 1 0 Plasma-membrane choline transporter BRI3BP PF14965.6 gi|389846815|ref|YP_006349054.1| - 0.096 12.2 1.4 0.14 11.7 1.4 1.2 1 0 0 1 1 1 0 Negative regulator of p53/TP53 DUF4131 PF13567.6 gi|389846815|ref|YP_006349054.1| - 0.12 12.0 1.8 0.13 11.9 1.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3040 PF11239.8 gi|389846815|ref|YP_006349054.1| - 1.8 8.9 4.6 2.5 8.5 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) RhodobacterPufX PF11511.8 gi|389846815|ref|YP_006349054.1| - 8.9 6.0 7.9 2.5 7.8 5.0 1.5 1 1 1 2 2 2 0 Intrinsic membrane protein PufX Gluconate_2-dh3 PF13618.6 gi|389846816|ref|YP_006349055.1| - 2.3e-09 37.6 0.0 3.1e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 DUF2173 PF09941.9 gi|389846816|ref|YP_006349055.1| - 0.027 14.8 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) DUF2059 PF09832.9 gi|389846816|ref|YP_006349055.1| - 0.14 12.2 0.0 0.37 10.9 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2059) TetR_C_28 PF17937.1 gi|389846816|ref|YP_006349055.1| - 0.43 11.1 3.0 0.52 10.8 1.0 2.1 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain GMC_oxred_C PF05199.13 gi|389846817|ref|YP_006349056.1| - 5.3e-25 88.6 0.5 1.3e-24 87.4 0.5 1.7 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|389846817|ref|YP_006349056.1| - 2.5e-11 43.5 0.0 5.3e-11 42.4 0.0 1.6 1 1 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|389846817|ref|YP_006349056.1| - 2.3e-09 36.9 0.9 0.00017 20.8 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|389846817|ref|YP_006349056.1| - 3.2e-08 33.5 8.7 9.3e-07 28.7 7.3 3.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|389846817|ref|YP_006349056.1| - 3.7e-08 33.0 2.1 3e-05 23.4 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|389846817|ref|YP_006349056.1| - 4.2e-05 22.9 0.2 0.00079 18.7 0.2 2.7 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389846817|ref|YP_006349056.1| - 5.6e-05 23.3 0.1 0.00019 21.6 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|389846817|ref|YP_006349056.1| - 8.5e-05 21.8 0.4 0.00015 21.0 0.4 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|389846817|ref|YP_006349056.1| - 0.00041 19.2 2.2 0.002 16.9 0.9 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|389846817|ref|YP_006349056.1| - 0.00072 19.0 0.1 0.0045 16.4 0.2 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|389846817|ref|YP_006349056.1| - 0.0022 17.3 0.1 0.0039 16.4 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|389846817|ref|YP_006349056.1| - 0.008 15.5 0.4 0.029 13.6 0.4 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|389846817|ref|YP_006349056.1| - 0.014 15.0 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|389846817|ref|YP_006349056.1| - 0.046 12.8 0.4 0.1 11.6 0.1 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|389846817|ref|YP_006349056.1| - 0.069 13.7 0.1 2.6 8.7 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|389846817|ref|YP_006349056.1| - 0.074 12.3 0.2 0.75 9.0 0.1 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4_7 PF12838.7 gi|389846817|ref|YP_006349056.1| - 0.11 13.1 0.3 0.24 12.0 0.3 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Shikimate_DH PF01488.20 gi|389846817|ref|YP_006349056.1| - 0.18 11.9 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|389846817|ref|YP_006349056.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389846817|ref|YP_006349056.1| - 0.24 11.7 0.4 0.6 10.4 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain PBP_like_2 PF12849.7 gi|389846818|ref|YP_006349057.1| - 1.9e-24 86.8 0.1 2.6e-24 86.4 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|389846818|ref|YP_006349057.1| - 8.2e-08 32.3 0.1 4.9e-07 29.7 0.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|389846818|ref|YP_006349057.1| - 6.9e-05 22.1 0.5 0.0001 21.5 0.0 1.5 2 0 0 2 2 2 1 PBP superfamily domain LysR_substrate PF03466.20 gi|389846818|ref|YP_006349057.1| - 0.0077 15.6 0.0 0.0099 15.3 0.0 1.2 1 0 0 1 1 1 1 LysR substrate binding domain SMBP PF16785.5 gi|389846818|ref|YP_006349057.1| - 0.033 14.4 0.2 0.061 13.5 0.1 1.5 1 1 0 1 1 1 0 Small metal-binding protein Aminotran_1_2 PF00155.21 gi|389846819|ref|YP_006349058.1| - 3.4e-69 233.7 0.0 3.8e-69 233.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II FTR PF01913.18 gi|389846819|ref|YP_006349058.1| - 0.017 15.0 0.1 0.036 14.0 0.1 1.5 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase Alliinase_C PF04864.13 gi|389846819|ref|YP_006349058.1| - 0.045 12.6 0.0 0.073 11.9 0.0 1.3 1 0 0 1 1 1 0 Allinase AAA_18 PF13238.6 gi|389846820|ref|YP_006349059.1| - 9.2e-23 81.2 0.1 1.2e-22 80.9 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|389846820|ref|YP_006349059.1| - 8.5e-06 26.2 0.2 0.0041 17.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389846820|ref|YP_006349059.1| - 0.00016 21.9 0.7 0.11 12.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA PF00004.29 gi|389846820|ref|YP_006349059.1| - 0.00062 20.2 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 gi|389846820|ref|YP_006349059.1| - 0.00095 19.3 0.1 1.1 9.3 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_28 PF13521.6 gi|389846820|ref|YP_006349059.1| - 0.0033 17.7 2.9 0.0079 16.4 2.4 2.2 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|389846820|ref|YP_006349059.1| - 0.0063 16.4 0.1 0.01 15.7 0.1 1.4 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|389846820|ref|YP_006349059.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389846820|ref|YP_006349059.1| - 0.013 15.9 1.4 0.066 13.6 1.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|389846820|ref|YP_006349059.1| - 0.03 13.6 0.5 0.093 12.0 0.0 2.0 2 1 1 3 3 3 0 Zeta toxin ATP_bind_2 PF03668.15 gi|389846820|ref|YP_006349059.1| - 0.065 12.5 0.1 0.08 12.2 0.1 1.1 1 0 0 1 1 1 0 P-loop ATPase protein family RuvB_N PF05496.12 gi|389846820|ref|YP_006349059.1| - 0.076 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ADK PF00406.22 gi|389846820|ref|YP_006349059.1| - 0.098 12.8 0.0 13 5.9 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase AAA_19 PF13245.6 gi|389846820|ref|YP_006349059.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389846820|ref|YP_006349059.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|389846820|ref|YP_006349059.1| - 0.12 12.3 0.0 4.2 7.2 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_5 PF07728.14 gi|389846820|ref|YP_006349059.1| - 0.12 12.3 0.0 1.6 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|389846820|ref|YP_006349059.1| - 0.13 12.7 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|389846820|ref|YP_006349059.1| - 0.44 10.2 2.1 1.2 8.8 2.1 1.8 1 1 0 1 1 1 0 AAA domain CDP-OH_P_transf PF01066.21 gi|389846821|ref|YP_006349060.1| - 1.6e-08 35.2 0.6 1.6e-08 35.2 0.6 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DNA_processg_A PF02481.15 gi|389846821|ref|YP_006349060.1| - 0.14 11.3 0.5 0.26 10.5 0.5 1.3 1 0 0 1 1 1 0 DNA recombination-mediator protein A HTH_3 PF01381.22 gi|389846822|ref|YP_006349061.1| - 2.1e-07 30.9 1.1 3.3e-07 30.3 1.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|389846822|ref|YP_006349061.1| - 8.1e-07 29.3 0.7 1.5e-06 28.5 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|389846822|ref|YP_006349061.1| - 1.2e-05 25.3 0.5 1.7e-05 24.7 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|389846822|ref|YP_006349061.1| - 3.1e-05 23.7 0.8 5e-05 23.1 0.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|389846822|ref|YP_006349061.1| - 0.0069 16.3 0.3 0.015 15.3 0.3 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DUF4193 PF13834.6 gi|389846822|ref|YP_006349061.1| - 0.3 11.6 0.1 0.3 11.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4193) PI3K_1B_p101 PF10486.9 gi|389846822|ref|YP_006349061.1| - 0.41 8.4 8.6 0.48 8.2 8.6 1.1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit Herpes_capsid PF06112.11 gi|389846822|ref|YP_006349061.1| - 0.79 9.8 10.5 1.4 8.9 10.5 1.4 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein Herpes_pp85 PF04637.12 gi|389846822|ref|YP_006349061.1| - 2.5 6.4 9.6 3.3 6.0 9.6 1.1 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) Spt5_N PF11942.8 gi|389846822|ref|YP_006349061.1| - 3.5 8.7 8.1 0.37 11.8 3.7 1.7 2 0 0 2 2 2 0 Spt5 transcription elongation factor, acidic N-terminal RAP1 PF07218.11 gi|389846822|ref|YP_006349061.1| - 4.1 5.6 7.2 4.3 5.5 7.2 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SpoIIIAH PF12685.7 gi|389846822|ref|YP_006349061.1| - 5.3 6.8 8.7 7.7 6.3 8.7 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein TIM PF00121.18 gi|662859435|ref|YP_006349062.2| - 4.2e-08 32.9 0.0 5.7e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|662859435|ref|YP_006349062.2| - 0.00039 19.8 2.0 0.00039 19.8 2.0 2.0 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.6 gi|662859435|ref|YP_006349062.2| - 0.013 15.5 0.8 0.17 11.9 0.1 2.6 2 0 0 2 2 2 0 HAD-hyrolase-like IGPS PF00218.21 gi|662859435|ref|YP_006349062.2| - 0.057 12.6 0.0 0.09 11.9 0.0 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|662859435|ref|YP_006349062.2| - 0.099 11.6 7.4 0.028 13.5 3.7 1.8 2 1 0 2 2 2 0 FMN-dependent dehydrogenase DUF87 PF01935.17 gi|389846824|ref|YP_006349063.1| - 2.5e-12 47.4 0.4 8.4e-12 45.7 0.0 2.0 2 0 0 2 2 2 1 Helicase HerA, central domain CbiA PF01656.23 gi|389846824|ref|YP_006349063.1| - 0.00085 19.4 0.0 0.0012 18.9 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|389846824|ref|YP_006349063.1| - 0.0034 17.8 2.0 0.04 14.3 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain DUF853 PF05872.12 gi|389846824|ref|YP_006349063.1| - 0.0068 15.1 4.3 0.026 13.1 0.0 2.6 3 1 0 3 3 3 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|389846824|ref|YP_006349063.1| - 0.007 15.3 0.0 0.082 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain APS_kinase PF01583.20 gi|389846824|ref|YP_006349063.1| - 0.019 14.8 0.0 0.061 13.2 0.0 1.8 2 0 0 2 2 1 0 Adenylylsulphate kinase ResIII PF04851.15 gi|389846824|ref|YP_006349063.1| - 0.022 14.7 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF4515 PF14988.6 gi|389846824|ref|YP_006349063.1| - 0.025 14.4 3.8 0.44 10.3 3.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) TrwB_AAD_bind PF10412.9 gi|389846824|ref|YP_006349063.1| - 0.048 12.6 0.3 0.098 11.6 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Med9 PF07544.13 gi|389846824|ref|YP_006349063.1| - 0.073 13.2 3.6 0.17 12.0 3.6 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Med21 PF11221.8 gi|389846824|ref|YP_006349063.1| - 0.1 12.8 3.6 0.3 11.3 3.6 1.8 1 0 0 1 1 1 0 Subunit 21 of Mediator complex FtsK_SpoIIIE PF01580.18 gi|389846824|ref|YP_006349063.1| - 0.11 11.8 0.7 0.31 10.3 0.0 2.0 3 0 0 3 3 3 0 FtsK/SpoIIIE family DUF16 PF01519.16 gi|389846824|ref|YP_006349063.1| - 0.16 12.5 1.0 0.35 11.4 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 AAA_13 PF13166.6 gi|389846824|ref|YP_006349063.1| - 0.17 10.5 3.0 0.27 9.8 3.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|389846824|ref|YP_006349063.1| - 0.18 11.7 0.0 0.44 10.4 0.0 1.6 1 0 0 1 1 1 0 NTPase ATPase_2 PF01637.18 gi|389846824|ref|YP_006349063.1| - 0.19 11.6 0.2 0.42 10.5 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea CCDC53 PF10152.9 gi|389846824|ref|YP_006349063.1| - 0.36 11.3 2.4 0.67 10.4 2.4 1.5 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex DUF4407 PF14362.6 gi|389846824|ref|YP_006349063.1| - 0.4 10.0 7.8 0.65 9.3 7.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PspA_IM30 PF04012.12 gi|389846824|ref|YP_006349063.1| - 0.81 9.2 14.6 0.036 13.6 8.9 1.6 2 0 0 2 2 2 0 PspA/IM30 family DivIC PF04977.15 gi|389846824|ref|YP_006349063.1| - 1.4 8.7 5.1 3.8 7.3 5.1 1.7 1 0 0 1 1 1 0 Septum formation initiator DUF641 PF04859.12 gi|389846824|ref|YP_006349063.1| - 1.4 9.2 5.8 5.6 7.3 4.6 2.4 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) AAA_23 PF13476.6 gi|389846824|ref|YP_006349063.1| - 3.1 8.2 5.6 0.53 10.7 0.6 2.0 2 0 0 2 2 2 0 AAA domain Med4 PF10018.9 gi|389846824|ref|YP_006349063.1| - 4.9 6.8 11.4 0.24 11.0 5.1 2.0 2 1 1 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Pox_A_type_inc PF04508.12 gi|389846824|ref|YP_006349063.1| - 6.8 6.7 6.8 6 6.9 3.7 2.4 1 1 1 2 2 2 0 Viral A-type inclusion protein repeat Response_reg PF00072.24 gi|389846825|ref|YP_006349064.1| - 1.7e-21 76.5 0.0 4.2e-21 75.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|389846825|ref|YP_006349064.1| - 9.9e-18 64.4 1.5 1.2e-13 51.2 0.1 3.1 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|389846825|ref|YP_006349064.1| - 2.6e-16 60.1 0.0 4.6e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|389846825|ref|YP_006349064.1| - 1.4e-14 54.2 3.6 2.5e-14 53.3 0.2 2.9 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|389846825|ref|YP_006349064.1| - 9.5e-13 48.0 0.1 3e-12 46.4 0.1 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|389846825|ref|YP_006349064.1| - 2.6e-08 34.1 0.0 0.00092 19.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|389846825|ref|YP_006349064.1| - 0.0028 17.6 0.1 0.01 15.8 0.1 2.0 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain WEMBL PF05701.11 gi|389846825|ref|YP_006349064.1| - 0.05 12.3 0.0 0.075 11.7 0.0 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light IMS PF00817.20 gi|389846826|ref|YP_006349065.1| - 1.1e-38 132.6 0.0 1.8e-38 131.9 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|389846826|ref|YP_006349065.1| - 8.4e-15 55.5 0.0 7.8e-14 52.4 0.1 2.2 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|389846826|ref|YP_006349065.1| - 6e-08 32.6 0.0 1.4e-07 31.4 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|389846826|ref|YP_006349065.1| - 0.00035 21.1 0.0 0.0009 19.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|389846826|ref|YP_006349065.1| - 0.0016 18.3 0.0 0.0033 17.2 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HTH_24 PF13412.6 gi|389846827|ref|YP_006349066.1| - 4.4e-15 55.0 0.0 7.5e-15 54.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|389846827|ref|YP_006349066.1| - 8.6e-11 41.5 0.0 1.5e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|389846827|ref|YP_006349066.1| - 5.8e-10 39.0 0.0 9.4e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|389846827|ref|YP_006349066.1| - 2.6e-07 30.5 0.0 5.8e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|389846827|ref|YP_006349066.1| - 5.7e-07 29.3 0.0 1.9e-06 27.7 0.0 1.8 2 1 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|389846827|ref|YP_006349066.1| - 8.6e-07 29.1 0.1 2.7e-06 27.5 0.0 1.8 2 1 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|389846827|ref|YP_006349066.1| - 9.2e-07 28.7 0.0 1.7e-06 27.8 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_23 PF13384.6 gi|389846827|ref|YP_006349066.1| - 1.4e-06 27.9 0.0 2.8e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|389846827|ref|YP_006349066.1| - 3.1e-06 27.0 0.0 5.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|389846827|ref|YP_006349066.1| - 5.6e-06 26.3 0.0 1.6e-05 24.8 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|389846827|ref|YP_006349066.1| - 6.7e-06 25.8 0.0 1.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|389846827|ref|YP_006349066.1| - 8e-06 25.6 0.0 1.7e-05 24.5 0.0 1.5 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|389846827|ref|YP_006349066.1| - 1e-05 25.3 0.0 1.7e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|389846827|ref|YP_006349066.1| - 2.1e-05 24.3 0.0 4.3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|389846827|ref|YP_006349066.1| - 4.6e-05 23.4 0.0 8.1e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 gi|389846827|ref|YP_006349066.1| - 7.9e-05 22.9 0.0 0.00021 21.6 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|389846827|ref|YP_006349066.1| - 8.7e-05 22.4 0.0 0.00025 21.0 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|389846827|ref|YP_006349066.1| - 0.00034 20.4 0.1 0.00066 19.4 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_28 PF13518.6 gi|389846827|ref|YP_006349066.1| - 0.00054 20.0 0.0 0.001 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389846827|ref|YP_006349066.1| - 0.00059 19.5 0.1 0.0011 18.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|389846827|ref|YP_006349066.1| - 0.00065 19.3 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|389846827|ref|YP_006349066.1| - 0.0012 19.2 0.0 0.0021 18.4 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein LacI PF00356.21 gi|389846827|ref|YP_006349066.1| - 0.0016 18.2 0.0 0.011 15.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Sigma70_r4 PF04545.16 gi|389846827|ref|YP_006349066.1| - 0.0062 16.0 0.4 0.018 14.5 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 TetR_N PF00440.23 gi|389846827|ref|YP_006349066.1| - 0.0073 16.1 0.1 0.014 15.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_6 PF01418.17 gi|389846827|ref|YP_006349066.1| - 0.0083 16.1 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_3 PF01381.22 gi|389846827|ref|YP_006349066.1| - 0.01 15.9 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_31 PF13560.6 gi|389846827|ref|YP_006349066.1| - 0.014 15.7 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|389846827|ref|YP_006349066.1| - 0.015 15.5 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|389846827|ref|YP_006349066.1| - 0.021 14.6 0.1 0.043 13.6 0.1 1.5 1 0 0 1 1 1 0 MerR family regulatory protein TFIIE_alpha PF02002.17 gi|389846827|ref|YP_006349066.1| - 0.022 14.6 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_1 PF00126.27 gi|389846827|ref|YP_006349066.1| - 0.027 14.4 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_47 PF16221.5 gi|389846827|ref|YP_006349066.1| - 0.041 13.5 0.0 0.084 12.4 0.0 1.6 1 0 0 1 1 1 0 winged helix-turn-helix DUF4110 PF13422.6 gi|389846827|ref|YP_006349066.1| - 0.042 13.9 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) HTH_Tnp_1 PF01527.20 gi|389846827|ref|YP_006349066.1| - 0.042 14.2 0.1 0.062 13.6 0.1 1.4 1 1 0 1 1 1 0 Transposase HTH_Mga PF08280.11 gi|389846827|ref|YP_006349066.1| - 0.046 13.8 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_19 PF12844.7 gi|389846827|ref|YP_006349066.1| - 0.048 13.7 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|389846827|ref|YP_006349066.1| - 0.067 12.2 0.0 0.087 11.8 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_38 PF13936.6 gi|389846827|ref|YP_006349066.1| - 0.068 12.9 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 gi|389846827|ref|YP_006349066.1| - 0.078 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_30 PF13556.6 gi|389846827|ref|YP_006349066.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_22 PF13309.6 gi|389846827|ref|YP_006349066.1| - 0.11 12.6 0.1 0.26 11.4 0.1 1.7 2 0 0 2 2 1 0 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|389846827|ref|YP_006349066.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 RPA_C PF08784.11 gi|389846827|ref|YP_006349066.1| - 0.15 12.7 0.0 0.26 11.9 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal TPP_enzyme_C PF02775.21 gi|389846828|ref|YP_006349067.1| - 1.4e-30 106.1 0.2 2e-30 105.6 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|389846828|ref|YP_006349067.1| - 0.14 12.3 1.7 0.38 10.9 1.7 1.8 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|389846829|ref|YP_006349068.1| - 6.7e-49 166.7 0.1 1.2e-48 165.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|389846829|ref|YP_006349068.1| - 3.1e-48 164.2 0.0 5.7e-48 163.3 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|389846829|ref|YP_006349068.1| - 4.3e-11 43.0 0.0 8.5e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|389846829|ref|YP_006349068.1| - 0.00054 19.8 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|389846829|ref|YP_006349068.1| - 0.009 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Chorismate_synt PF01264.21 gi|389846830|ref|YP_006349069.1| - 4.3e-118 393.8 0.0 5e-118 393.6 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Phosphodiest PF01663.22 gi|389846832|ref|YP_006349071.1| - 2.1e-31 109.8 0.3 8.7e-30 104.5 0.3 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|389846832|ref|YP_006349071.1| - 0.00014 22.0 0.0 0.052 13.6 0.0 2.2 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 gi|389846832|ref|YP_006349071.1| - 0.018 14.4 0.1 0.046 13.1 0.0 1.6 2 0 0 2 2 2 0 Metalloenzyme superfamily EPSP_synthase PF00275.20 gi|389846833|ref|YP_006349072.1| - 1.1e-107 360.4 0.1 1.3e-107 360.1 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CBS PF00571.28 gi|389846835|ref|YP_006349074.1| - 3.9e-25 88.0 8.5 8.4e-14 51.8 0.7 2.1 2 0 0 2 2 2 2 CBS domain MAF_flag10 PF01973.18 gi|389846835|ref|YP_006349074.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF115 LppC PF04348.13 gi|389846835|ref|YP_006349074.1| - 0.11 11.3 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 LppC putative lipoprotein GAF PF01590.26 gi|389846835|ref|YP_006349074.1| - 0.11 13.1 0.3 0.15 12.7 0.3 1.2 1 0 0 1 1 1 0 GAF domain TmoB PF06234.12 gi|389846835|ref|YP_006349074.1| - 0.26 11.4 6.1 3 8.0 0.5 2.2 2 0 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) Peptidase_M24 PF00557.24 gi|389846836|ref|YP_006349075.1| - 4.6e-47 160.4 0.8 5.8e-47 160.1 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|389846836|ref|YP_006349075.1| - 9.3e-05 23.1 0.0 0.00025 21.7 0.0 1.7 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain adh_short PF00106.25 gi|389846838|ref|YP_006349077.1| - 1.8e-35 122.2 0.0 2.5e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389846838|ref|YP_006349077.1| - 1.2e-32 113.4 0.0 1.6e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|389846838|ref|YP_006349077.1| - 3.9e-09 36.7 0.0 5.5e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389846838|ref|YP_006349077.1| - 0.0037 16.8 0.1 0.0052 16.3 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|389846838|ref|YP_006349077.1| - 0.15 11.4 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PDH PF02153.17 gi|389846840|ref|YP_006349079.1| - 3.5e-15 55.7 0.1 1.3e-13 50.6 0.1 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.22 gi|389846840|ref|YP_006349079.1| - 0.0044 17.8 0.2 0.026 15.4 0.0 2.3 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|389846840|ref|YP_006349079.1| - 0.017 15.7 0.0 0.083 13.5 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrbC PF04956.13 gi|389846840|ref|YP_006349079.1| - 0.018 15.2 0.5 3.7 7.8 0.2 2.5 2 0 0 2 2 2 0 TrbC/VIRB2 family Methyltransf_12 PF08242.12 gi|662859436|ref|YP_006349080.2| - 1.4e-08 35.4 0.0 3.4e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|662859436|ref|YP_006349080.2| - 2.5e-07 30.7 0.0 4.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|662859436|ref|YP_006349080.2| - 9.3e-06 25.1 0.0 1.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|662859436|ref|YP_006349080.2| - 1.2e-05 25.1 0.0 3.1e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|662859436|ref|YP_006349080.2| - 2.3e-05 24.9 0.0 4.9e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|662859436|ref|YP_006349080.2| - 4.7e-05 24.0 0.0 0.00011 22.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|662859436|ref|YP_006349080.2| - 0.014 14.7 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G SurE PF01975.17 gi|662859437|ref|YP_006349081.2| - 4.3e-45 153.9 0.0 5.6e-45 153.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Antibiotic_NAT PF02522.14 gi|389846843|ref|YP_006349082.1| - 2.2e-80 269.6 0.0 2.5e-80 269.4 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase OsmC PF02566.19 gi|389846844|ref|YP_006349083.1| - 3e-16 59.7 0.0 4.3e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein OsmC PF02566.19 gi|662859438|ref|YP_006349084.2| - 1.2e-16 61.0 0.0 1.6e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein CMD PF02627.20 gi|389846846|ref|YP_006349085.1| - 6.4e-15 55.0 0.0 9.1e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Thioredoxin_2 PF13098.6 gi|389846846|ref|YP_006349085.1| - 0.0072 16.8 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain DUF4253 PF14062.6 gi|389846846|ref|YP_006349085.1| - 0.057 13.6 0.1 0.093 12.9 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4253) NicO PF03824.16 gi|389846847|ref|YP_006349086.1| - 1.1e-05 25.0 4.5 1.1e-05 25.0 4.5 1.9 2 0 0 2 2 2 1 High-affinity nickel-transport protein DUF4199 PF13858.6 gi|389846847|ref|YP_006349086.1| - 0.66 10.3 16.5 3.6 8.0 2.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) NikR_C PF08753.11 gi|389846848|ref|YP_006349087.1| - 1.1e-17 64.0 0.5 1.6e-17 63.5 0.5 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|389846848|ref|YP_006349087.1| - 0.001 18.9 0.1 0.0021 17.9 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PKcGMP_CC PF16808.5 gi|389846848|ref|YP_006349087.1| - 0.034 14.0 0.4 8.4 6.3 0.2 2.5 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase CPBP PF02517.16 gi|389846849|ref|YP_006349088.1| - 3.5e-12 46.5 4.0 3.5e-12 46.5 4.0 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease HTH_10 PF04967.12 gi|389846850|ref|YP_006349089.1| - 5.1e-15 55.0 0.1 1.3e-14 53.7 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain BAT PF15915.5 gi|389846850|ref|YP_006349089.1| - 8.4e-05 22.5 1.0 0.00012 22.0 1.0 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain AsnC_trans_reg PF01037.21 gi|389846850|ref|YP_006349089.1| - 0.005 16.8 0.0 0.36 10.8 0.0 2.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain T2SSM PF04612.12 gi|389846850|ref|YP_006349089.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M OCD_Mu_crystall PF02423.15 gi|389846850|ref|YP_006349089.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family LmjF365940-deam PF14421.6 gi|389846852|ref|YP_006349091.1| - 0.13 11.8 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 A distinct subfamily of CDD/CDA-like deaminases HxlR PF01638.17 gi|389846853|ref|YP_006349092.1| - 2.8e-25 88.0 0.0 3.3e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389846853|ref|YP_006349092.1| - 0.0014 18.5 0.0 0.0022 17.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|389846853|ref|YP_006349092.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Rdx PF10262.9 gi|389846854|ref|YP_006349093.1| - 1e-16 60.9 0.0 1.1e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 Rdx family SBF PF01758.16 gi|389846855|ref|YP_006349094.1| - 5.2e-12 45.8 13.9 1e-11 44.9 13.9 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family Thiolase_N PF00108.23 gi|389846855|ref|YP_006349094.1| - 0.16 11.3 0.6 0.26 10.6 0.6 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain HxlR PF01638.17 gi|389846856|ref|YP_006349095.1| - 4.2e-20 71.4 0.0 4.9e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389846856|ref|YP_006349095.1| - 5.3e-05 23.1 0.1 7.2e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|389846856|ref|YP_006349095.1| - 0.0011 19.1 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|389846856|ref|YP_006349095.1| - 0.0038 17.1 0.0 0.0058 16.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|389846856|ref|YP_006349095.1| - 0.0043 17.1 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389846856|ref|YP_006349095.1| - 0.0084 16.0 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|389846856|ref|YP_006349095.1| - 0.051 14.1 0.0 0.065 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|389846856|ref|YP_006349095.1| - 0.093 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_XkdX PF09693.10 gi|389846856|ref|YP_006349095.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) HTH_45 PF14947.6 gi|389846856|ref|YP_006349095.1| - 0.17 11.9 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Motilin_ghrelin PF04644.12 gi|389846857|ref|YP_006349096.1| - 0.35 10.7 2.1 8.2 6.3 1.1 2.2 2 0 0 2 2 2 0 Motilin/ghrelin CM_2 PF01817.21 gi|389846858|ref|YP_006349097.1| - 4.3e-16 59.0 3.5 5.2e-16 58.8 3.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II NPFF PF15085.6 gi|389846858|ref|YP_006349097.1| - 0.027 14.8 0.3 0.027 14.8 0.3 1.5 2 0 0 2 2 2 0 Neuropeptide FF GHMP_kinases_N PF00288.26 gi|662859439|ref|YP_006349098.2| - 4.9e-13 49.1 1.5 1.2e-12 47.9 1.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|662859439|ref|YP_006349098.2| - 0.016 15.6 0.3 0.079 13.3 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal zf-C2H2_3 PF13878.6 gi|389846862|ref|YP_006349101.1| - 0.0035 17.1 1.9 0.006 16.4 1.9 1.5 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO Zn-ribbon_8 PF09723.10 gi|389846862|ref|YP_006349101.1| - 0.0061 16.6 0.6 0.0079 16.3 0.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|389846862|ref|YP_006349101.1| - 0.058 13.2 0.4 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 zinc-ribbon domain DUF1163 PF06651.11 gi|389846862|ref|YP_006349101.1| - 0.084 13.0 0.1 0.085 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1163) AAA PF00004.29 gi|389846863|ref|YP_006349102.1| - 9.3e-95 314.1 0.0 2.2e-46 157.6 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|389846863|ref|YP_006349102.1| - 6.6e-29 99.5 6.4 1.7e-14 53.4 0.3 2.9 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|389846863|ref|YP_006349102.1| - 3.2e-22 78.5 1.6 1.6e-21 76.3 0.5 2.8 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|389846863|ref|YP_006349102.1| - 5.6e-16 58.7 0.0 1e-06 28.6 0.0 3.3 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|389846863|ref|YP_006349102.1| - 5.5e-14 52.5 0.1 4.4e-06 26.9 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|389846863|ref|YP_006349102.1| - 1.6e-13 51.4 2.8 1.9e-05 25.1 0.1 3.9 3 2 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|389846863|ref|YP_006349102.1| - 1.6e-12 47.9 0.0 2.5e-05 24.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|389846863|ref|YP_006349102.1| - 2.1e-12 47.2 0.4 0.00022 21.2 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|389846863|ref|YP_006349102.1| - 1.4e-10 40.9 0.0 0.0001 21.6 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|389846863|ref|YP_006349102.1| - 2e-09 37.8 0.9 0.0022 18.3 0.1 3.5 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|389846863|ref|YP_006349102.1| - 4.2e-09 36.5 0.0 0.0019 18.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|389846863|ref|YP_006349102.1| - 4.1e-08 33.6 0.0 0.0025 18.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|389846863|ref|YP_006349102.1| - 4.2e-08 33.8 0.0 0.0069 16.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|389846863|ref|YP_006349102.1| - 5e-08 32.6 0.5 1.2e-07 31.3 0.5 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.17 gi|389846863|ref|YP_006349102.1| - 3.7e-07 30.1 0.0 0.014 15.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|389846863|ref|YP_006349102.1| - 4.6e-07 30.2 0.0 0.015 15.7 0.0 3.0 3 0 0 3 3 2 2 RNA helicase TsaE PF02367.17 gi|389846863|ref|YP_006349102.1| - 1.2e-06 28.6 0.0 0.024 14.6 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|389846863|ref|YP_006349102.1| - 1.2e-06 28.3 0.1 0.071 12.8 0.0 3.4 4 0 0 4 4 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|389846863|ref|YP_006349102.1| - 1.4e-06 27.9 0.1 0.063 12.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|389846863|ref|YP_006349102.1| - 2e-06 27.7 0.0 0.061 13.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|389846863|ref|YP_006349102.1| - 3.5e-06 27.0 0.0 0.083 12.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|389846863|ref|YP_006349102.1| - 1.1e-05 25.2 1.3 0.13 12.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain ABC_tran PF00005.27 gi|389846863|ref|YP_006349102.1| - 1.2e-05 25.9 0.0 0.1 13.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|389846863|ref|YP_006349102.1| - 1.7e-05 24.2 0.1 0.094 12.0 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|389846863|ref|YP_006349102.1| - 2.4e-05 24.5 0.0 0.073 13.2 0.0 2.7 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|389846863|ref|YP_006349102.1| - 3.2e-05 23.5 0.0 0.029 13.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region DUF2075 PF09848.9 gi|389846863|ref|YP_006349102.1| - 5.2e-05 22.6 0.0 0.13 11.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|389846863|ref|YP_006349102.1| - 5.8e-05 23.1 2.1 0.33 10.9 0.1 3.6 4 0 0 4 4 3 1 NACHT domain PhoH PF02562.16 gi|389846863|ref|YP_006349102.1| - 6.9e-05 22.4 0.4 0.31 10.5 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|389846863|ref|YP_006349102.1| - 0.00012 21.3 0.1 0.41 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|389846863|ref|YP_006349102.1| - 0.00015 22.2 0.0 0.56 10.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|389846863|ref|YP_006349102.1| - 0.0002 21.0 1.9 0.28 10.7 0.1 3.1 2 2 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|389846863|ref|YP_006349102.1| - 0.00027 20.2 0.0 0.38 9.9 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain CPT PF07931.12 gi|389846863|ref|YP_006349102.1| - 0.00033 20.5 0.0 1.5 8.7 0.0 3.4 3 0 0 3 3 3 1 Chloramphenicol phosphotransferase-like protein ATPase PF06745.13 gi|389846863|ref|YP_006349102.1| - 0.00066 19.1 0.0 0.8 9.0 0.0 2.6 2 0 0 2 2 2 2 KaiC AAA_17 PF13207.6 gi|389846863|ref|YP_006349102.1| - 0.00066 20.1 0.0 1.8 9.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|389846863|ref|YP_006349102.1| - 0.00072 19.4 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 gi|389846863|ref|YP_006349102.1| - 0.0013 18.5 0.0 1.8 8.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain T2SSE PF00437.20 gi|389846863|ref|YP_006349102.1| - 0.0017 17.5 0.5 2.2 7.3 0.0 3.4 3 0 0 3 3 3 1 Type II/IV secretion system protein DUF815 PF05673.13 gi|389846863|ref|YP_006349102.1| - 0.0018 17.5 0.0 0.78 8.8 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF815) Torsin PF06309.11 gi|389846863|ref|YP_006349102.1| - 0.0021 18.2 0.0 2 8.6 0.0 2.5 2 0 0 2 2 2 1 Torsin Cytidylate_kin PF02224.18 gi|389846863|ref|YP_006349102.1| - 0.0028 17.4 0.1 2 8.1 0.0 2.7 2 0 0 2 2 2 1 Cytidylate kinase Rad17 PF03215.15 gi|389846863|ref|YP_006349102.1| - 0.0038 17.2 0.0 2.7 7.9 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain SKI PF01202.22 gi|389846863|ref|YP_006349102.1| - 0.0076 16.4 0.0 3.8 7.6 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Hydin_ADK PF17213.3 gi|389846863|ref|YP_006349102.1| - 0.012 15.9 0.3 1.5 9.0 0.0 2.5 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain NTPase_1 PF03266.15 gi|389846863|ref|YP_006349102.1| - 0.013 15.4 0.0 2.4 8.0 0.0 2.9 2 0 0 2 2 2 0 NTPase ResIII PF04851.15 gi|389846863|ref|YP_006349102.1| - 0.013 15.5 0.0 4.9 7.1 0.0 2.7 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit Vps4_C PF09336.10 gi|389846863|ref|YP_006349102.1| - 0.018 15.0 0.1 24 5.0 0.0 3.6 3 0 0 3 3 3 0 Vps4 C terminal oligomerisation domain TniB PF05621.11 gi|389846863|ref|YP_006349102.1| - 0.021 14.3 0.0 13 5.2 0.0 3.5 3 1 0 4 4 4 0 Bacterial TniB protein AFG1_ATPase PF03969.16 gi|389846863|ref|YP_006349102.1| - 0.054 12.4 0.0 8.1 5.2 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Bac_DnaA PF00308.18 gi|389846863|ref|YP_006349102.1| - 0.083 12.7 0.0 16 5.2 0.0 2.8 3 0 0 3 3 3 0 Bacterial dnaA protein SRPRB PF09439.10 gi|389846863|ref|YP_006349102.1| - 0.19 11.2 0.0 4.1 6.8 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATPase_2 PF01637.18 gi|389846863|ref|YP_006349102.1| - 0.21 11.5 0.0 24 4.7 0.0 3.0 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea DAP3 PF10236.9 gi|389846863|ref|YP_006349102.1| - 0.23 10.6 0.0 4.4 6.4 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Methyltransf_25 PF13649.6 gi|389846864|ref|YP_006349103.1| - 2.2e-09 37.9 0.1 3.4e-09 37.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846864|ref|YP_006349103.1| - 9.1e-08 32.7 0.1 1.3e-07 32.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846864|ref|YP_006349103.1| - 1.1e-07 31.8 0.0 1.6e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846864|ref|YP_006349103.1| - 4.6e-06 26.6 0.0 6.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389846864|ref|YP_006349103.1| - 0.0014 18.2 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|389846864|ref|YP_006349103.1| - 0.0021 18.8 0.0 0.0032 18.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|389846864|ref|YP_006349103.1| - 0.0025 17.2 0.0 0.0038 16.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TrkA_N PF02254.18 gi|389846864|ref|YP_006349103.1| - 0.081 13.2 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain TPMT PF05724.11 gi|389846864|ref|YP_006349103.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Ubie_methyltran PF01209.18 gi|389846864|ref|YP_006349103.1| - 0.16 11.3 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family SH3_14 PF18343.1 gi|389846865|ref|YP_006349104.1| - 0.0042 17.2 0.1 0.043 13.9 0.0 2.1 2 0 0 2 2 2 1 Dda helicase SH3 domain cIII PF08134.11 gi|389846865|ref|YP_006349104.1| - 0.021 14.6 1.5 0.32 10.8 0.0 2.8 3 0 0 3 3 3 0 cIII protein family HTH_20 PF12840.7 gi|389846866|ref|YP_006349105.1| - 9.2e-12 44.8 0.2 1.4e-11 44.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389846866|ref|YP_006349105.1| - 1.9e-07 30.8 0.8 2.5e-07 30.5 0.1 1.5 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.20 gi|389846866|ref|YP_006349105.1| - 8.1e-07 28.8 0.0 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389846866|ref|YP_006349105.1| - 1e-05 25.3 0.4 5.6e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|389846866|ref|YP_006349105.1| - 1.1e-05 25.3 0.0 1.6e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.9 gi|389846866|ref|YP_006349105.1| - 0.00057 20.1 0.0 0.00076 19.7 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) TFIIE_alpha PF02002.17 gi|389846866|ref|YP_006349105.1| - 0.0014 18.5 0.1 0.0018 18.1 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HxlR PF01638.17 gi|389846866|ref|YP_006349105.1| - 0.0014 18.4 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389846866|ref|YP_006349105.1| - 0.0024 17.8 0.2 0.0038 17.2 0.2 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389846866|ref|YP_006349105.1| - 0.0024 18.3 0.0 0.0042 17.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|389846866|ref|YP_006349105.1| - 0.0028 17.8 0.0 0.0037 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|389846866|ref|YP_006349105.1| - 0.0083 15.7 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|389846866|ref|YP_006349105.1| - 0.0087 16.2 0.0 0.022 14.9 0.0 1.6 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC RP-C PF03428.13 gi|389846866|ref|YP_006349105.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF2250 PF10007.9 gi|389846866|ref|YP_006349105.1| - 0.018 15.1 0.4 0.062 13.4 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.10 gi|389846866|ref|YP_006349105.1| - 0.036 14.0 0.2 0.074 13.0 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|389846866|ref|YP_006349105.1| - 0.057 13.2 0.1 0.11 12.3 0.1 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389846866|ref|YP_006349105.1| - 0.062 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|389846866|ref|YP_006349105.1| - 0.098 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_30 PF13556.6 gi|389846866|ref|YP_006349105.1| - 0.18 11.7 1.4 1.3 8.9 0.2 2.5 2 1 1 3 3 3 0 PucR C-terminal helix-turn-helix domain DEAD_assoc PF08494.11 gi|389846868|ref|YP_006349107.1| - 1.1e-33 116.7 0.2 2.9e-33 115.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|389846868|ref|YP_006349107.1| - 9.5e-29 100.4 0.0 4.6e-28 98.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|389846868|ref|YP_006349107.1| - 1.7e-21 76.6 0.0 6.1e-20 71.6 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|389846868|ref|YP_006349107.1| - 1.1e-10 41.8 0.0 2.4e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|389846868|ref|YP_006349107.1| - 1.9e-05 25.0 0.1 0.00057 20.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|389846868|ref|YP_006349107.1| - 0.00016 21.3 0.1 0.00067 19.3 0.1 2.1 1 0 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|389846868|ref|YP_006349107.1| - 0.0011 17.8 0.0 0.0017 17.1 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain HypA PF01155.19 gi|389846868|ref|YP_006349107.1| - 0.076 13.0 0.1 0.23 11.5 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_22 PF13401.6 gi|389846868|ref|YP_006349107.1| - 0.17 12.2 1.1 3.9 7.7 1.2 2.8 1 1 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.10 gi|389846868|ref|YP_006349107.1| - 0.21 11.7 0.3 0.43 10.7 0.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain MFS_Mycoplasma PF07672.13 gi|389846870|ref|YP_006349109.1| - 0.014 14.7 0.2 0.017 14.4 0.2 1.2 1 1 0 1 1 1 0 Mycoplasma MFS transporter Metallophos_2 PF12850.7 gi|389846871|ref|YP_006349110.1| - 2.4e-07 31.1 0.2 3.1e-07 30.7 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|389846871|ref|YP_006349110.1| - 0.00017 22.1 0.7 0.00047 20.7 0.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF5304 PF17230.2 gi|389846871|ref|YP_006349110.1| - 0.063 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5304) Trypan_PARP PF05887.11 gi|389846872|ref|YP_006349111.1| - 2.9 7.9 126.5 0.17 11.9 28.2 5.3 1 1 3 4 4 4 0 Procyclic acidic repetitive protein (PARP) tRNA_anti-codon PF01336.25 gi|389846873|ref|YP_006349112.1| - 6.2e-05 22.9 1.9 2.1 8.4 0.1 4.1 4 1 0 4 4 4 2 OB-fold nucleic acid binding domain Sigma70_r3 PF04539.16 gi|389846873|ref|YP_006349112.1| - 0.44 10.7 2.6 7.7 6.7 0.0 2.7 2 0 0 2 2 2 0 Sigma-70 region 3 Glycos_transf_1 PF00534.20 gi|662859440|ref|YP_006349114.2| - 2.2e-27 95.7 0.0 4e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|662859440|ref|YP_006349114.2| - 2.4e-24 86.3 0.0 3.7e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|662859440|ref|YP_006349114.2| - 6.8e-17 62.0 0.0 1.6e-16 60.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|662859440|ref|YP_006349114.2| - 2.5e-14 54.0 0.0 4.6e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|662859440|ref|YP_006349114.2| - 2.6e-05 24.1 0.0 0.14 11.8 0.0 3.0 2 1 0 3 3 3 2 Starch synthase catalytic domain RibD_C PF01872.17 gi|389846876|ref|YP_006349115.1| - 1.1e-50 172.2 0.2 1.3e-50 172.1 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain FbpC_C_terminal PF17845.1 gi|389846876|ref|YP_006349115.1| - 0.017 15.2 0.1 2 8.6 0.0 2.8 2 0 0 2 2 2 0 FbpC C-terminal regulatory nucleotide binding domain DUF4350 PF14258.6 gi|389846876|ref|YP_006349115.1| - 0.29 11.6 3.3 2 8.9 0.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) Thioredoxin PF00085.20 gi|389846877|ref|YP_006349116.1| - 1.4e-26 92.5 0.0 1.6e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|389846877|ref|YP_006349116.1| - 2.9e-07 30.9 0.1 1.3e-05 25.6 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|389846877|ref|YP_006349116.1| - 0.0003 20.9 0.0 0.00051 20.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|389846877|ref|YP_006349116.1| - 0.0022 18.0 0.2 0.003 17.6 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|389846877|ref|YP_006349116.1| - 0.0031 17.8 0.0 0.0061 16.9 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like DIM1 PF02966.16 gi|389846877|ref|YP_006349116.1| - 0.007 16.1 0.3 0.017 14.9 0.3 1.5 1 1 0 1 1 1 1 Mitosis protein DIM1 Thioredoxin_9 PF14595.6 gi|389846877|ref|YP_006349116.1| - 0.0071 16.1 0.0 0.0085 15.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|389846877|ref|YP_006349116.1| - 0.022 14.1 0.0 0.024 14.0 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Sigma70_r3 PF04539.16 gi|389846877|ref|YP_006349116.1| - 0.031 14.4 3.6 0.11 12.6 0.6 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 P34-Arc PF04045.14 gi|389846877|ref|YP_006349116.1| - 0.04 13.6 0.1 0.053 13.2 0.1 1.1 1 0 0 1 1 1 0 Arp2/3 complex, 34 kD subunit p34-Arc DUF836 PF05768.14 gi|389846877|ref|YP_006349116.1| - 0.054 13.9 0.1 0.084 13.3 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.21 gi|389846877|ref|YP_006349116.1| - 0.082 12.8 0.0 0.092 12.7 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family Cupin_2 PF07883.11 gi|389846878|ref|YP_006349117.1| - 1e-07 31.6 4.2 1.5e-07 31.0 4.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|389846878|ref|YP_006349117.1| - 0.012 15.3 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DUF1479 PF07350.12 gi|389846878|ref|YP_006349117.1| - 0.08 11.7 0.0 0.094 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1479) CDO_I PF05995.12 gi|389846878|ref|YP_006349117.1| - 0.18 11.1 0.5 0.25 10.7 0.5 1.1 1 0 0 1 1 1 0 Cysteine dioxygenase type I NifU PF01106.17 gi|662859441|ref|YP_006349118.2| - 3.8e-11 43.0 0.0 4.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain SBDS PF01172.18 gi|389846880|ref|YP_006349119.1| - 3.9e-21 74.9 0.0 5.6e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|389846880|ref|YP_006349119.1| - 2.6e-17 62.9 0.0 4.4e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain FUN14 PF04930.15 gi|389846881|ref|YP_006349120.1| - 1.9e-20 73.1 6.0 2.3e-20 72.8 6.0 1.1 1 0 0 1 1 1 1 FUN14 family UPF0444 PF15475.6 gi|389846881|ref|YP_006349120.1| - 0.44 10.9 4.8 0.89 9.9 0.2 2.2 2 0 0 2 2 2 0 Transmembrane protein C12orf23, UPF0444 GTP-bdg_N PF13167.6 gi|389846882|ref|YP_006349121.1| - 1.6e-21 76.8 0.0 4e-21 75.5 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|389846882|ref|YP_006349121.1| - 5.8e-18 65.0 0.0 1.3e-17 64.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|389846882|ref|YP_006349121.1| - 1.7e-16 60.5 6.7 3.4e-16 59.6 6.7 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|389846882|ref|YP_006349121.1| - 4.9e-11 42.5 0.0 1.8e-10 40.7 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|389846882|ref|YP_006349121.1| - 1.6e-08 34.7 0.1 0.00027 20.9 0.1 2.8 3 0 0 3 3 3 2 RsgA GTPase cobW PF02492.19 gi|389846882|ref|YP_006349121.1| - 4.5e-06 26.4 0.2 0.00026 20.6 0.1 2.3 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|389846882|ref|YP_006349121.1| - 0.00011 21.7 0.9 0.23 11.0 0.0 3.1 4 0 0 4 4 4 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|389846882|ref|YP_006349121.1| - 0.00045 20.2 0.0 0.00095 19.2 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|389846882|ref|YP_006349121.1| - 0.0019 18.8 0.0 0.01 16.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|389846882|ref|YP_006349121.1| - 0.0034 17.1 0.0 0.71 9.6 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|389846882|ref|YP_006349121.1| - 0.0065 15.9 0.6 2.5 7.5 0.1 2.6 2 1 1 3 3 3 2 ADP-ribosylation factor family DUF2046 PF09755.9 gi|389846882|ref|YP_006349121.1| - 0.011 15.0 0.4 0.011 15.0 0.4 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein H4 (DUF2046) PUMA PF15826.5 gi|389846882|ref|YP_006349121.1| - 0.025 14.8 1.8 0.11 12.7 1.7 1.9 2 0 0 2 2 2 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis Roc PF08477.13 gi|389846882|ref|YP_006349121.1| - 0.03 14.5 0.0 11 6.3 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase CbiA PF01656.23 gi|389846882|ref|YP_006349121.1| - 0.035 14.1 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.6 gi|389846882|ref|YP_006349121.1| - 0.059 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|389846882|ref|YP_006349121.1| - 0.087 12.6 0.1 7.1 6.3 0.0 2.3 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|389846882|ref|YP_006349121.1| - 0.11 12.8 3.2 0.11 12.8 0.8 2.2 1 1 1 2 2 2 0 AAA ATPase domain DUF1573 PF07610.11 gi|389846883|ref|YP_006349122.1| - 0.00037 20.5 10.1 1.6 8.8 0.0 5.3 5 1 0 5 5 5 3 Protein of unknown function (DUF1573) MG2 PF01835.19 gi|389846883|ref|YP_006349122.1| - 0.013 15.9 15.6 0.022 15.2 0.0 6.1 6 2 1 7 7 7 0 MG2 domain PGF-CTERM PF18204.1 gi|389846883|ref|YP_006349122.1| - 0.014 15.4 1.4 0.014 15.4 1.4 1.9 2 0 0 2 2 2 0 PGF-CTERM motif FixG_C PF11614.8 gi|389846883|ref|YP_006349122.1| - 9.5 6.5 17.7 0.44 10.8 0.1 5.3 6 1 1 7 7 7 0 IG-like fold at C-terminal of FixG, putative oxidoreductase MoaC PF01967.21 gi|389846884|ref|YP_006349123.1| - 4.9e-49 165.9 1.9 5.7e-49 165.7 1.9 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|389846885|ref|YP_006349124.1| - 2.5e-49 168.0 0.6 5.6e-49 166.8 0.7 1.5 2 0 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.15 gi|389846885|ref|YP_006349124.1| - 4.8e-43 147.0 1.3 4.8e-43 147.0 1.3 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|389846885|ref|YP_006349124.1| - 1.7e-05 24.3 0.1 3.2e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MFS_1 PF07690.16 gi|662859442|ref|YP_006349125.2| - 1.5e-36 126.1 45.4 1.5e-36 126.1 45.4 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|662859442|ref|YP_006349125.2| - 2e-05 23.6 16.3 8.1e-05 21.6 16.2 2.0 1 1 0 1 1 1 1 MFS_1 like family HTH_20 PF12840.7 gi|389846887|ref|YP_006349126.1| - 7.2e-11 42.0 0.2 9.4e-11 41.6 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389846887|ref|YP_006349126.1| - 2e-07 30.8 0.1 2.9e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|389846887|ref|YP_006349126.1| - 5e-06 26.0 0.0 7.1e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389846887|ref|YP_006349126.1| - 0.0029 17.5 0.0 0.0049 16.7 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|389846887|ref|YP_006349126.1| - 0.013 15.5 0.0 0.017 15.1 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|389846887|ref|YP_006349126.1| - 0.068 13.1 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|389846887|ref|YP_006349126.1| - 0.074 13.4 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.6 gi|389846887|ref|YP_006349126.1| - 0.079 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389846887|ref|YP_006349126.1| - 0.13 12.2 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DUF505 PF04458.12 gi|389846887|ref|YP_006349126.1| - 0.14 10.5 0.0 0.16 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF3860 PF12976.7 gi|389846887|ref|YP_006349126.1| - 0.16 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3860) FaeA PF04703.12 gi|389846887|ref|YP_006349126.1| - 0.16 12.4 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Helicase_C_2 PF13307.6 gi|389846888|ref|YP_006349127.1| - 6.7e-31 107.8 0.0 3.5e-30 105.4 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|389846888|ref|YP_006349127.1| - 2.2e-06 27.4 0.0 5.6e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|389846888|ref|YP_006349127.1| - 0.00098 19.2 0.0 0.039 14.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|389846888|ref|YP_006349127.1| - 0.001 18.5 0.0 0.0027 17.2 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein DUF2075 PF09848.9 gi|389846888|ref|YP_006349127.1| - 0.0031 16.8 0.0 0.03 13.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|389846888|ref|YP_006349127.1| - 0.018 15.3 0.0 0.56 10.5 0.0 2.9 2 1 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|389846888|ref|YP_006349127.1| - 0.034 13.8 0.0 0.34 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|389846888|ref|YP_006349127.1| - 0.035 13.9 0.0 3 7.6 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase zf-dskA_traR PF01258.17 gi|389846889|ref|YP_006349128.1| - 0.029 14.3 0.5 0.18 11.7 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2116 PF09889.9 gi|389846889|ref|YP_006349128.1| - 0.069 13.1 3.7 0.6 10.1 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) MutS_V PF00488.21 gi|389846891|ref|YP_006349130.1| - 2.7e-06 27.5 0.0 4.7e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_28 PF13521.6 gi|389846891|ref|YP_006349130.1| - 0.00047 20.4 2.0 0.0066 16.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|389846891|ref|YP_006349130.1| - 0.0012 18.8 0.2 0.0024 17.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_14 PF13173.6 gi|389846891|ref|YP_006349130.1| - 0.0047 17.0 0.0 0.012 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain FeoA PF04023.14 gi|389846891|ref|YP_006349130.1| - 0.08 13.2 0.2 0.27 11.5 0.2 1.9 1 0 0 1 1 1 0 FeoA domain PreAtp-grasp PF18604.1 gi|389846891|ref|YP_006349130.1| - 0.093 12.4 1.0 0.33 10.6 0.1 2.4 2 0 0 2 2 2 0 Pre ATP-grasp domain IMS_HHH PF11798.8 gi|389846891|ref|YP_006349130.1| - 0.094 13.1 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif UPF0058 PF01893.16 gi|389846892|ref|YP_006349131.1| - 3.6e-11 43.2 0.0 4e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 PAS_9 PF13426.7 gi|389846893|ref|YP_006349132.1| - 6.2e-24 84.2 0.0 2.9e-13 50.0 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|389846893|ref|YP_006349132.1| - 6e-23 81.2 2.3 2.1e-11 44.0 0.1 2.7 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|389846893|ref|YP_006349132.1| - 7.1e-19 68.5 2.4 1.3e-18 67.6 0.2 2.6 3 0 0 3 3 3 1 GAF domain HATPase_c PF02518.26 gi|389846893|ref|YP_006349132.1| - 1.8e-18 67.1 0.0 5.6e-18 65.5 0.0 1.9 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|389846893|ref|YP_006349132.1| - 1.3e-11 44.5 0.2 3.2e-08 33.6 0.1 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.6 gi|389846893|ref|YP_006349132.1| - 1.7e-07 31.2 0.1 4.9e-07 29.7 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|389846893|ref|YP_006349132.1| - 1.5e-05 25.6 0.1 0.0031 18.2 0.0 3.3 2 1 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|389846893|ref|YP_006349132.1| - 7.9e-05 22.6 0.4 0.12 12.4 0.2 2.8 2 0 0 2 2 2 2 PAS domain HisKA_4TM PF16926.5 gi|389846893|ref|YP_006349132.1| - 0.00016 21.2 0.1 0.00029 20.5 0.1 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|389846893|ref|YP_006349132.1| - 0.0015 18.4 0.0 0.0028 17.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain GAF_3 PF13492.6 gi|389846893|ref|YP_006349132.1| - 0.0041 17.5 0.0 0.018 15.4 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|389846893|ref|YP_006349132.1| - 0.022 15.0 0.1 0.053 13.8 0.1 1.7 1 0 0 1 1 1 0 PAS fold DASH_Duo1 PF08651.10 gi|389846893|ref|YP_006349132.1| - 0.046 13.5 1.9 0.23 11.3 0.0 2.8 3 0 0 3 3 3 0 DASH complex subunit Duo1 BAT PF15915.5 gi|662859443|ref|YP_006349133.2| - 2.2e-35 121.9 16.0 2.2e-35 121.9 16.0 2.3 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|662859443|ref|YP_006349133.2| - 8.5e-21 73.5 0.0 2.5e-20 72.0 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|662859443|ref|YP_006349133.2| - 1.6e-17 63.7 0.5 3.9e-17 62.4 0.5 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|662859443|ref|YP_006349133.2| - 4.8e-10 39.6 9.6 3.5e-09 36.9 9.6 2.6 1 0 0 1 1 1 1 HalX domain GAF_3 PF13492.6 gi|662859443|ref|YP_006349133.2| - 4e-07 30.4 0.0 1.7e-06 28.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|662859443|ref|YP_006349133.2| - 4.3e-06 27.1 0.4 4.3e-06 27.1 0.4 2.9 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 gi|662859443|ref|YP_006349133.2| - 9.9e-06 26.2 0.2 3.7e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain GerE PF00196.19 gi|662859443|ref|YP_006349133.2| - 0.0016 17.9 0.0 0.0079 15.7 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|662859443|ref|YP_006349133.2| - 0.0029 17.1 0.0 0.023 14.2 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|662859443|ref|YP_006349133.2| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|662859443|ref|YP_006349133.2| - 0.015 15.0 0.0 0.061 13.1 0.0 2.1 1 1 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|662859443|ref|YP_006349133.2| - 0.042 13.9 2.0 0.12 12.4 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|662859443|ref|YP_006349133.2| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family CR6_interact PF10147.9 gi|662859443|ref|YP_006349133.2| - 0.17 11.6 1.1 0.26 11.0 1.1 1.2 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Response_reg PF00072.24 gi|389846895|ref|YP_006349134.1| - 4.5e-16 59.0 0.0 5.5e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain CpXC PF14353.6 gi|389846896|ref|YP_006349135.1| - 0.0014 18.7 0.9 0.0017 18.4 0.9 1.1 1 0 0 1 1 1 1 CpXC protein Zn_ribbon_SprT PF17283.2 gi|389846896|ref|YP_006349135.1| - 0.14 12.1 5.2 3.5 7.6 0.5 2.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain CxC7 PF18866.1 gi|389846896|ref|YP_006349135.1| - 0.16 12.1 3.6 0.35 11.0 0.3 2.1 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases Zn_Tnp_IS1595 PF12760.7 gi|389846896|ref|YP_006349135.1| - 0.18 11.8 4.8 0.81 9.7 4.8 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TrmB PF01978.19 gi|662859444|ref|YP_006349136.2| - 3.2e-16 59.0 0.0 4.3e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|662859444|ref|YP_006349136.2| - 1.5e-06 28.6 0.0 2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.6 gi|662859444|ref|YP_006349136.2| - 0.00034 20.1 0.3 0.0023 17.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|662859444|ref|YP_006349136.2| - 0.00055 19.7 0.2 0.00093 19.0 0.2 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|662859444|ref|YP_006349136.2| - 0.00075 19.3 0.1 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|662859444|ref|YP_006349136.2| - 0.0011 18.9 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|662859444|ref|YP_006349136.2| - 0.0014 18.5 0.1 0.0031 17.4 0.0 1.7 2 0 0 2 2 2 1 MarR family FUR PF01475.19 gi|662859444|ref|YP_006349136.2| - 0.0015 18.6 0.0 0.0023 18.1 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family UMPH-1 PF05822.12 gi|662859444|ref|YP_006349136.2| - 0.0055 16.3 0.1 0.007 15.9 0.1 1.3 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) RuvB_C PF05491.13 gi|662859444|ref|YP_006349136.2| - 0.0086 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|662859444|ref|YP_006349136.2| - 0.013 15.5 0.2 0.021 14.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|662859444|ref|YP_006349136.2| - 0.032 13.9 0.1 0.053 13.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|662859444|ref|YP_006349136.2| - 0.033 14.2 0.2 0.071 13.1 0.2 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.14 gi|662859444|ref|YP_006349136.2| - 0.037 14.0 0.4 0.072 13.1 0.3 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|662859444|ref|YP_006349136.2| - 0.039 14.5 0.1 0.079 13.5 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|662859444|ref|YP_006349136.2| - 0.039 13.8 0.1 0.066 13.0 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.20 gi|662859444|ref|YP_006349136.2| - 0.071 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|662859444|ref|YP_006349136.2| - 0.098 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|662859444|ref|YP_006349136.2| - 0.11 12.2 0.1 0.27 11.0 0.1 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|662859444|ref|YP_006349136.2| - 0.11 12.5 0.0 0.17 11.9 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix TauE PF01925.19 gi|389846898|ref|YP_006349137.1| - 4.4e-42 144.4 23.4 4.4e-42 144.4 23.4 1.9 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE Sulf_transp PF04143.14 gi|389846899|ref|YP_006349138.1| - 1.1e-06 28.4 6.7 1.1e-06 28.4 6.7 2.0 1 1 1 2 2 2 2 Sulphur transport DUF4235 PF14019.6 gi|389846899|ref|YP_006349138.1| - 0.44 10.7 3.6 19 5.4 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF4235) DUF2162 PF09930.9 gi|389846899|ref|YP_006349138.1| - 0.58 9.5 4.8 3.4 7.0 1.9 2.2 2 0 0 2 2 2 0 Predicted transporter (DUF2162) Sulf_transp PF04143.14 gi|389846900|ref|YP_006349139.1| - 2.2e-12 47.2 11.8 3.1e-12 46.7 11.8 1.2 1 0 0 1 1 1 1 Sulphur transport Lactamase_B PF00753.27 gi|389846901|ref|YP_006349140.1| - 1.6e-16 60.9 7.6 2.9e-16 60.1 7.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|389846901|ref|YP_006349140.1| - 1.9e-08 34.8 0.0 3.3e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|389846901|ref|YP_006349140.1| - 0.009 15.5 0.2 0.017 14.7 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|389846901|ref|YP_006349140.1| - 0.016 15.1 0.1 0.034 14.0 0.1 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain TusA PF01206.17 gi|389846902|ref|YP_006349141.1| - 4.8e-17 61.5 0.0 5.2e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|389846902|ref|YP_006349141.1| - 0.00018 21.3 0.0 0.00031 20.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|389846903|ref|YP_006349142.1| - 2.9e-53 179.9 1.2 4.2e-53 179.4 1.2 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|389846903|ref|YP_006349142.1| - 4.7e-08 33.4 0.0 2.7e-07 31.0 0.0 2.1 2 1 0 2 2 2 1 DsrE/DsrF-like family DUF1192 PF06698.11 gi|389846903|ref|YP_006349142.1| - 0.0017 18.4 0.1 0.0034 17.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1192) DivIC PF04977.15 gi|389846903|ref|YP_006349142.1| - 0.013 15.3 0.1 0.03 14.1 0.1 1.6 1 0 0 1 1 1 0 Septum formation initiator Phage_holin_7_1 PF16081.5 gi|389846903|ref|YP_006349142.1| - 0.08 13.1 1.2 1.5 9.0 0.6 2.2 2 0 0 2 2 2 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family AIM24 PF01987.17 gi|389846904|ref|YP_006349143.1| - 2.5e-31 109.0 0.2 2.9e-31 108.8 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Usp PF00582.26 gi|389846905|ref|YP_006349144.1| - 1.5e-07 32.0 1.3 2.3e-07 31.4 1.3 1.3 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|389846905|ref|YP_006349144.1| - 0.0038 17.1 0.1 0.068 13.1 0.0 2.1 2 0 0 2 2 2 1 Electron transfer flavoprotein domain DUF2840 PF11000.8 gi|389846905|ref|YP_006349144.1| - 0.052 13.3 0.1 0.094 12.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2840) Acyl-CoA_dh_1 PF00441.24 gi|389846906|ref|YP_006349145.1| - 1.1e-43 149.0 1.5 2e-43 148.2 1.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389846906|ref|YP_006349145.1| - 7.7e-29 99.8 0.1 2.7e-28 98.0 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|389846906|ref|YP_006349145.1| - 2e-26 92.9 2.3 2e-26 92.9 2.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|389846906|ref|YP_006349145.1| - 8.6e-19 68.1 1.3 8.6e-19 68.1 1.3 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|389846906|ref|YP_006349145.1| - 2.6e-05 24.0 0.1 0.00013 21.8 0.1 2.0 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.28 gi|662859445|ref|YP_006349146.2| - 2.4e-95 319.6 0.0 3e-95 319.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|662859445|ref|YP_006349146.2| - 4.5e-24 85.2 0.3 9.9e-24 84.1 0.3 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Prot_ATP_ID_OB PF16450.5 gi|662859445|ref|YP_006349146.2| - 0.015 15.3 0.0 11 6.1 0.0 4.1 4 0 0 4 4 4 0 Proteasomal ATPase OB C-terminal domain AMP-binding PF00501.28 gi|662859446|ref|YP_006349147.2| - 4.7e-85 285.7 0.0 6.2e-85 285.3 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|662859446|ref|YP_006349147.2| - 9.5e-14 52.1 0.0 2.7e-13 50.7 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Glyoxalase_4 PF13669.6 gi|389846909|ref|YP_006349148.1| - 2e-17 63.4 0.1 2.4e-17 63.2 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|389846909|ref|YP_006349148.1| - 2.6e-08 34.2 0.6 2.8e-08 34.1 0.6 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|389846909|ref|YP_006349148.1| - 2.3e-06 27.9 0.3 2.6e-06 27.7 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|389846909|ref|YP_006349148.1| - 0.0088 16.8 0.2 0.011 16.5 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain YbjQ_1 PF01906.17 gi|389846910|ref|YP_006349149.1| - 2.7e-36 124.4 6.2 3e-36 124.2 6.2 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|389846910|ref|YP_006349149.1| - 0.011 16.2 2.0 0.034 14.6 0.3 2.0 1 1 1 2 2 2 0 Selenium binding protein APH PF01636.23 gi|389846911|ref|YP_006349150.1| - 1.1e-13 51.7 0.7 1.5e-13 51.3 0.7 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|389846911|ref|YP_006349150.1| - 3.8e-06 26.3 0.0 6.4e-06 25.6 0.0 1.5 1 1 0 1 1 1 1 Fructosamine kinase DUF1679 PF07914.11 gi|389846911|ref|YP_006349150.1| - 0.016 14.1 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) EcKinase PF02958.20 gi|389846911|ref|YP_006349150.1| - 0.075 12.3 0.0 0.096 12.0 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase MM_CoA_mutase PF01642.22 gi|389846912|ref|YP_006349151.1| - 1e-223 743.6 2.7 1.1e-223 743.4 2.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Methyltransf_3 PF01596.17 gi|389846913|ref|YP_006349152.1| - 6.1e-23 81.1 0.0 7.5e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|389846913|ref|YP_006349152.1| - 9.5e-15 55.5 0.5 2e-14 54.5 0.5 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389846913|ref|YP_006349152.1| - 0.00016 21.5 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|389846913|ref|YP_006349152.1| - 0.022 14.5 0.0 0.046 13.5 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NAC PF01849.18 gi|662859447|ref|YP_006349153.2| - 1.2e-18 66.8 0.9 1.8e-18 66.2 0.9 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|662859447|ref|YP_006349153.2| - 0.057 13.2 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 UBA-like domain GCD14 PF08704.10 gi|389846915|ref|YP_006349154.1| - 3.8e-17 62.8 0.0 5e-14 52.6 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|389846915|ref|YP_006349154.1| - 6.5e-09 35.8 0.0 8.2e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389846915|ref|YP_006349154.1| - 5e-07 30.3 0.2 8.1e-07 29.7 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846915|ref|YP_006349154.1| - 1.3e-06 28.9 0.2 2.3e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389846915|ref|YP_006349154.1| - 2.8e-05 23.7 0.1 5.9e-05 22.7 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|389846915|ref|YP_006349154.1| - 9.1e-05 23.4 0.2 0.00016 22.6 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|389846915|ref|YP_006349154.1| - 0.00014 21.7 0.0 0.00018 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|389846915|ref|YP_006349154.1| - 0.00017 21.1 0.0 0.00023 20.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.17 gi|389846915|ref|YP_006349154.1| - 0.00049 19.3 0.0 0.00061 19.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|389846915|ref|YP_006349154.1| - 0.0047 16.0 0.0 0.0068 15.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|389846915|ref|YP_006349154.1| - 0.0073 15.9 0.2 0.011 15.3 0.2 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|389846915|ref|YP_006349154.1| - 0.011 15.0 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|389846915|ref|YP_006349154.1| - 0.019 14.8 0.0 0.047 13.5 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846915|ref|YP_006349154.1| - 0.02 15.6 0.1 0.033 14.9 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|389846915|ref|YP_006349154.1| - 0.022 14.7 0.1 0.035 14.1 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|389846915|ref|YP_006349154.1| - 0.039 13.4 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Cons_hypoth95 PF03602.15 gi|389846915|ref|YP_006349154.1| - 0.059 13.0 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TFIIS_C PF01096.18 gi|389846917|ref|YP_006349156.1| - 7.9e-17 60.8 3.7 7.9e-17 60.8 3.7 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|389846917|ref|YP_006349156.1| - 8.3e-05 22.4 0.5 8.3e-05 22.4 0.5 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|389846917|ref|YP_006349156.1| - 0.00022 20.5 3.8 0.23 10.9 0.2 3.3 3 0 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|389846917|ref|YP_006349156.1| - 0.00065 19.6 5.0 0.3 11.0 0.6 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|389846917|ref|YP_006349156.1| - 0.0019 18.2 6.2 0.29 11.2 0.1 2.6 2 1 0 2 2 2 2 Double zinc ribbon zf-RRN7 PF11781.8 gi|389846917|ref|YP_006349156.1| - 0.0021 17.7 0.1 0.0021 17.7 0.1 2.9 3 0 0 3 3 3 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|389846917|ref|YP_006349156.1| - 0.003 17.5 0.9 0.003 17.5 0.9 2.2 2 1 0 2 2 2 1 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|389846917|ref|YP_006349156.1| - 0.0098 16.0 2.6 0.0098 16.0 2.6 1.9 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.10 gi|389846917|ref|YP_006349156.1| - 0.038 14.1 6.6 0.55 10.4 0.0 3.7 3 1 0 3 3 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|389846917|ref|YP_006349156.1| - 0.35 10.8 11.3 9.4 6.3 0.2 4.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Rpr2 PF04032.16 gi|389846917|ref|YP_006349156.1| - 0.56 10.5 3.7 2.6 8.4 3.7 2.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn_ribbon_recom PF13408.6 gi|389846917|ref|YP_006349156.1| - 0.65 10.6 2.7 2.4 8.7 0.1 2.5 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain FYDLN_acid PF09538.10 gi|389846917|ref|YP_006349156.1| - 0.82 10.4 7.1 8.5 7.1 0.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc-ribbons_6 PF07191.12 gi|389846917|ref|YP_006349156.1| - 1.6 8.8 8.0 3.2 7.8 2.4 2.7 2 2 0 2 2 2 0 zinc-ribbons zinc_ribbon_4 PF13717.6 gi|389846917|ref|YP_006349156.1| - 1.8 8.5 5.9 22 5.1 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|389846917|ref|YP_006349156.1| - 3.4 7.5 6.6 1.4 8.7 1.5 2.7 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-IS66 PF13005.7 gi|389846917|ref|YP_006349156.1| - 7.2 7.1 9.1 13 6.3 1.6 3.3 3 1 0 3 3 2 0 zinc-finger binding domain of transposase IS66 Baculo_LEF5_C PF11792.8 gi|389846917|ref|YP_006349156.1| - 8.2 6.2 7.4 0.8 9.4 2.6 1.8 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_15 PF17032.5 gi|389846917|ref|YP_006349156.1| - 9 7.1 8.8 8.8 7.2 4.1 2.5 1 1 1 2 2 2 0 zinc-ribbon family ECH_1 PF00378.20 gi|662859448|ref|YP_006349158.2| - 2.8e-62 210.3 0.0 3.1e-62 210.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|662859448|ref|YP_006349158.2| - 5.4e-36 124.8 0.1 8.3e-35 120.8 0.0 1.8 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|662859448|ref|YP_006349158.2| - 0.00035 19.7 0.0 0.00051 19.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase PqqD PF05402.12 gi|389846920|ref|YP_006349159.1| - 0.012 15.9 0.0 0.026 14.8 0.0 1.7 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) GntR PF00392.21 gi|389846920|ref|YP_006349159.1| - 0.058 13.1 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Methyltransf_31 PF13847.6 gi|389846921|ref|YP_006349160.1| - 1.9e-14 53.8 0.0 2.1e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846921|ref|YP_006349160.1| - 7.7e-13 48.9 0.0 1e-12 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389846921|ref|YP_006349160.1| - 1.3e-11 45.1 0.0 1.8e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389846921|ref|YP_006349160.1| - 4.4e-10 40.2 0.0 5.9e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|389846921|ref|YP_006349160.1| - 7.5e-07 29.1 0.0 1.1e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|389846921|ref|YP_006349160.1| - 2.9e-06 27.2 0.0 3.6e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389846921|ref|YP_006349160.1| - 1.8e-05 24.3 0.0 2.7e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|389846921|ref|YP_006349160.1| - 6.6e-05 22.4 0.0 8.3e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|389846921|ref|YP_006349160.1| - 0.00015 21.1 0.0 0.00021 20.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|389846921|ref|YP_006349160.1| - 0.00098 18.9 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_24 PF13578.6 gi|389846921|ref|YP_006349160.1| - 0.0038 18.2 0.1 0.0063 17.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|389846921|ref|YP_006349160.1| - 0.0075 15.8 0.0 0.14 11.6 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase DUF938 PF06080.12 gi|389846921|ref|YP_006349160.1| - 0.0098 15.7 0.0 0.018 14.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_32 PF13679.6 gi|389846921|ref|YP_006349160.1| - 0.077 13.0 0.0 0.093 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NUDIX PF00293.28 gi|389846923|ref|YP_006349162.1| - 9.1e-18 64.6 0.4 1.3e-17 64.1 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|389846923|ref|YP_006349162.1| - 0.0047 17.4 0.0 0.0062 17.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain Ribosomal_S10 PF00338.22 gi|389846924|ref|YP_006349163.1| - 3.7e-08 33.5 0.0 4.3e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e CSD2 PF17876.1 gi|389846925|ref|YP_006349164.1| - 0.0097 16.1 0.1 0.013 15.6 0.1 1.2 1 0 0 1 1 1 1 Cold shock domain Na_H_antiporter PF03553.14 gi|389846926|ref|YP_006349165.1| - 3e-30 105.5 47.6 3e-17 62.8 22.3 2.3 2 0 0 2 2 2 2 Na+/H+ antiporter family Peptidase_M20 PF01546.28 gi|389846927|ref|YP_006349166.1| - 3.5e-20 72.6 5.8 5e-20 72.1 5.8 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|389846927|ref|YP_006349166.1| - 9.9e-09 35.1 1.0 2e-08 34.1 1.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain HATPase_c PF02518.26 gi|389846928|ref|YP_006349167.1| - 5.2e-16 59.2 0.0 9e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389846928|ref|YP_006349167.1| - 2.2e-11 43.6 1.3 6.4e-11 42.1 1.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|389846928|ref|YP_006349167.1| - 0.0023 17.9 0.0 0.0051 16.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SseB_C PF14581.6 gi|389846928|ref|YP_006349167.1| - 0.088 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 SseB protein C-terminal domain HATPase_c_3 PF13589.6 gi|389846928|ref|YP_006349167.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CarboxypepD_reg PF13620.6 gi|389846928|ref|YP_006349167.1| - 6.8 7.0 6.4 2 8.7 0.9 2.6 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain FAD_binding_3 PF01494.19 gi|389846929|ref|YP_006349168.1| - 1.1e-12 47.9 1.9 3.5e-12 46.2 1.9 1.8 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|389846929|ref|YP_006349168.1| - 4.1e-11 42.4 2.4 7.6e-07 28.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|389846929|ref|YP_006349168.1| - 1.7e-08 34.9 1.4 0.00043 20.8 0.9 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|389846929|ref|YP_006349168.1| - 1.1e-07 31.5 7.4 0.00069 19.1 3.5 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|389846929|ref|YP_006349168.1| - 3.6e-07 29.6 1.3 6.6e-07 28.7 1.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|389846929|ref|YP_006349168.1| - 5.6e-07 29.5 12.8 0.0019 17.8 1.5 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389846929|ref|YP_006349168.1| - 1.2e-06 27.9 4.3 1.4e-05 24.4 3.3 2.4 3 0 0 3 3 2 2 FAD binding domain Thi4 PF01946.17 gi|389846929|ref|YP_006349168.1| - 7e-06 25.5 2.0 6.7e-05 22.2 0.2 2.8 3 1 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.6 gi|389846929|ref|YP_006349168.1| - 2e-05 24.7 1.5 2e-05 24.7 1.5 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|389846929|ref|YP_006349168.1| - 4.2e-05 22.4 0.8 0.00043 19.1 0.8 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|389846929|ref|YP_006349168.1| - 4.4e-05 22.9 0.6 4.4e-05 22.9 0.6 2.5 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|389846929|ref|YP_006349168.1| - 0.003 17.2 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|389846929|ref|YP_006349168.1| - 0.0031 17.4 0.1 0.0063 16.4 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|389846929|ref|YP_006349168.1| - 0.006 15.7 5.2 0.44 9.5 0.3 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|389846929|ref|YP_006349168.1| - 0.0081 15.5 0.3 0.0081 15.5 0.3 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|389846929|ref|YP_006349168.1| - 0.01 15.1 0.4 0.01 15.1 0.4 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|389846929|ref|YP_006349168.1| - 0.025 13.9 0.3 0.41 9.9 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase ThiF PF00899.21 gi|389846929|ref|YP_006349168.1| - 0.031 13.6 0.1 0.054 12.9 0.1 1.3 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.20 gi|389846929|ref|YP_006349168.1| - 0.19 11.8 0.1 0.47 10.5 0.0 1.7 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase BPD_transp_2 PF02653.16 gi|389846930|ref|YP_006349169.1| - 4.1e-33 114.7 36.4 4.1e-33 114.7 36.4 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|389846931|ref|YP_006349170.1| - 2.4e-46 158.1 28.6 2.4e-46 158.1 28.6 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF1269 PF06897.12 gi|389846931|ref|YP_006349170.1| - 0.063 13.6 2.0 0.28 11.5 2.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) ABC_tran PF00005.27 gi|389846932|ref|YP_006349171.1| - 1.1e-45 155.6 0.0 3e-29 102.3 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|389846932|ref|YP_006349171.1| - 3.6e-10 40.1 0.6 0.00013 21.9 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Bac_DnaA PF00308.18 gi|389846932|ref|YP_006349171.1| - 3.1e-06 27.2 0.4 9.2e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_29 PF13555.6 gi|389846932|ref|YP_006349171.1| - 8e-06 25.5 0.1 0.032 14.0 0.0 2.7 3 0 0 3 3 3 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|389846932|ref|YP_006349171.1| - 0.0014 19.2 0.0 0.0043 17.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|389846932|ref|YP_006349171.1| - 0.0046 16.4 0.0 4.7 6.6 0.0 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|389846932|ref|YP_006349171.1| - 0.0064 16.4 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|389846932|ref|YP_006349171.1| - 0.0098 15.6 0.0 0.49 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|389846932|ref|YP_006349171.1| - 0.024 14.3 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|389846932|ref|YP_006349171.1| - 0.087 12.4 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|389846932|ref|YP_006349171.1| - 0.19 10.5 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Bmp PF02608.14 gi|389846933|ref|YP_006349172.1| - 4.6e-61 206.4 1.6 6.7e-61 205.9 1.6 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|389846933|ref|YP_006349172.1| - 0.052 13.4 1.1 0.052 13.4 1.1 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PGM_PMM_I PF02878.16 gi|389846934|ref|YP_006349173.1| - 8.7e-36 122.7 0.0 4.7e-35 120.3 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|389846934|ref|YP_006349173.1| - 6.2e-21 74.9 0.3 1.6e-20 73.6 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|389846934|ref|YP_006349173.1| - 1.1e-11 44.7 0.1 4.2e-11 42.9 0.1 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|389846934|ref|YP_006349173.1| - 0.0009 19.4 0.0 0.0018 18.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acylphosphatase PF00708.18 gi|662859449|ref|YP_006349174.2| - 3.4e-26 91.5 0.0 3.8e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase HTH_20 PF12840.7 gi|389846938|ref|YP_006349177.1| - 0.00045 20.2 0.2 0.001 19.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|389846938|ref|YP_006349177.1| - 0.00067 19.6 0.1 0.0016 18.3 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 gi|389846938|ref|YP_006349177.1| - 0.0043 16.8 0.2 0.01 15.6 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|389846938|ref|YP_006349177.1| - 0.0073 16.2 0.4 0.014 15.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389846938|ref|YP_006349177.1| - 0.0081 16.1 0.0 0.02 14.9 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|389846938|ref|YP_006349177.1| - 0.016 15.0 0.1 0.049 13.5 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_42 PF06224.12 gi|389846938|ref|YP_006349177.1| - 0.021 14.4 0.4 0.03 13.9 0.4 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|389846938|ref|YP_006349177.1| - 0.049 13.2 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|389846938|ref|YP_006349177.1| - 0.051 13.6 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2958 PF11171.8 gi|389846938|ref|YP_006349177.1| - 0.067 13.5 0.1 0.84 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2958) MaoC_dehydratas PF01575.19 gi|389846939|ref|YP_006349178.1| - 8.3e-06 25.4 0.0 5.7e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389846939|ref|YP_006349178.1| - 5.3e-05 23.4 0.0 0.0011 19.0 0.0 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase DUF4366 PF14283.6 gi|389846940|ref|YP_006349179.1| - 0.0075 16.3 0.8 0.031 14.3 0.1 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4366) vATP-synt_AC39 PF01992.16 gi|389846940|ref|YP_006349179.1| - 0.069 12.6 0.3 0.19 11.2 0.4 1.6 2 0 0 2 2 2 0 ATP synthase (C/AC39) subunit UCMA PF17085.5 gi|389846940|ref|YP_006349179.1| - 0.6 10.1 3.1 0.95 9.5 1.7 2.0 2 0 0 2 2 2 0 Unique cartilage matrix associated protein Polyketide_cyc2 PF10604.9 gi|662859450|ref|YP_006349180.2| - 2.8e-10 40.6 3.6 3.6e-10 40.3 3.6 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|662859450|ref|YP_006349180.2| - 0.0047 17.1 0.4 0.011 15.9 0.4 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MDD_C PF18376.1 gi|389846942|ref|YP_006349181.1| - 7.2e-06 25.9 0.1 1.1e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|389846942|ref|YP_006349181.1| - 9.6e-06 25.7 4.4 0.00011 22.4 0.5 2.3 1 1 0 2 2 2 2 GHMP kinases N terminal domain Methyltransf_34 PF11312.8 gi|389846942|ref|YP_006349181.1| - 0.036 13.3 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Pyr_redox_2 PF07992.14 gi|389846943|ref|YP_006349182.1| - 3.3e-32 111.9 0.7 4.7e-32 111.4 0.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389846943|ref|YP_006349182.1| - 2e-14 53.9 0.6 5.5e-10 39.7 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|389846943|ref|YP_006349182.1| - 1.4e-07 31.4 1.6 0.074 12.6 0.0 3.8 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|389846943|ref|YP_006349182.1| - 9.5e-06 25.7 1.5 0.49 10.4 0.1 3.5 2 2 1 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|389846943|ref|YP_006349182.1| - 7.9e-05 22.8 0.1 0.14 12.4 0.0 3.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|389846943|ref|YP_006349182.1| - 0.0062 16.8 0.5 2.9 8.2 0.0 2.6 2 0 0 2 2 2 2 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|389846943|ref|YP_006349182.1| - 0.0075 16.5 0.2 0.21 11.9 0.0 2.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Lycopene_cycl PF05834.12 gi|389846943|ref|YP_006349182.1| - 0.021 13.9 2.2 1.1 8.2 0.0 3.3 3 1 1 4 4 4 0 Lycopene cyclase protein Thi4 PF01946.17 gi|389846943|ref|YP_006349182.1| - 0.13 11.4 0.9 4.2 6.5 0.0 2.6 3 0 0 3 3 3 0 Thi4 family FAD_binding_3 PF01494.19 gi|389846943|ref|YP_006349182.1| - 1.6 7.9 9.4 1.1 8.4 0.1 3.4 3 2 0 3 3 3 0 FAD binding domain CBM_6 PF03422.15 gi|389846944|ref|YP_006349183.1| - 0.016 15.5 0.1 0.016 15.5 0.1 2.7 2 1 0 2 2 2 0 Carbohydrate binding module (family 6) SNAP PF14938.6 gi|389846944|ref|YP_006349183.1| - 0.019 14.4 0.5 0.028 13.9 0.5 1.2 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP MarR_2 PF12802.7 gi|389846945|ref|YP_006349184.1| - 8.2e-06 25.6 0.1 1.8e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389846945|ref|YP_006349184.1| - 9.7e-05 21.8 0.2 0.00028 20.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389846945|ref|YP_006349184.1| - 0.00019 21.3 0.0 0.00041 20.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|389846945|ref|YP_006349184.1| - 0.0012 18.7 0.0 0.0028 17.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|389846945|ref|YP_006349184.1| - 0.0015 18.4 0.1 0.0028 17.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|389846945|ref|YP_006349184.1| - 0.0032 17.2 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389846945|ref|YP_006349184.1| - 0.007 16.5 0.1 0.017 15.3 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|389846945|ref|YP_006349184.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain VirionAssem_T7 PF11653.8 gi|389846945|ref|YP_006349184.1| - 1 9.9 3.4 39 4.8 0.0 2.9 3 0 0 3 3 3 0 Bacteriophage T7 virion assembly protein Acyl-CoA_dh_1 PF00441.24 gi|389846946|ref|YP_006349185.1| - 2.6e-52 177.0 2.9 4.3e-52 176.3 2.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|389846946|ref|YP_006349185.1| - 1.7e-36 125.3 0.5 2.2e-35 121.7 0.1 2.6 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389846946|ref|YP_006349185.1| - 2.6e-27 94.9 0.1 4.7e-27 94.0 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|389846946|ref|YP_006349185.1| - 4.8e-27 94.9 6.6 7.4e-27 94.2 6.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB PF03241.13 gi|389846946|ref|YP_006349185.1| - 0.0095 15.0 0.1 0.016 14.3 0.1 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal HpaB_N PF11794.8 gi|389846946|ref|YP_006349185.1| - 0.017 14.8 3.4 0.027 14.2 0.5 2.4 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.6 gi|389846947|ref|YP_006349186.1| - 1e-24 87.6 0.0 1.9e-24 86.7 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389846947|ref|YP_006349186.1| - 1.3e-12 48.4 0.3 9.9e-12 45.6 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389846947|ref|YP_006349186.1| - 6.7e-08 32.5 0.1 2.8e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|389846947|ref|YP_006349186.1| - 1.1e-07 32.4 0.1 1.5e-07 32.0 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|389846947|ref|YP_006349186.1| - 0.0032 17.5 0.0 0.49 10.5 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase MC1 PF05854.11 gi|389846948|ref|YP_006349187.1| - 1.2e-40 137.7 0.2 1.4e-40 137.5 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 KorB_C PF06613.11 gi|389846948|ref|YP_006349187.1| - 0.066 13.2 0.5 0.79 9.8 0.2 2.3 2 0 0 2 2 2 0 KorB C-terminal beta-barrel domain NosD PF05048.13 gi|389846949|ref|YP_006349188.1| - 7.4e-23 81.1 55.2 2.5e-12 46.6 21.8 3.8 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|389846949|ref|YP_006349188.1| - 3.5e-22 79.0 60.2 6e-13 48.9 17.9 4.0 1 1 3 4 4 4 4 Right handed beta helix region DUF4399 PF14347.6 gi|389846950|ref|YP_006349189.1| - 9.3e-39 131.7 10.6 1.6e-24 86.1 1.8 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4399) DUF2436 PF10365.9 gi|389846950|ref|YP_006349189.1| - 3.1e-05 23.8 1.0 0.23 11.2 0.1 2.6 1 1 0 2 2 2 2 Domain of unknown function (DUF2436) RseC_MucC PF04246.12 gi|389846951|ref|YP_006349190.1| - 0.072 13.0 0.5 0.071 13.1 0.5 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Mrr_N PF14338.6 gi|389846952|ref|YP_006349191.1| - 0.00017 21.6 0.1 0.00019 21.5 0.1 1.3 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_Crp_2 PF13545.6 gi|389846952|ref|YP_006349191.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF629 PF04780.12 gi|389846955|ref|YP_006349194.1| - 0.0011 17.7 0.6 0.0011 17.6 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) zf-RanBP PF00641.18 gi|389846955|ref|YP_006349194.1| - 0.0053 16.0 0.4 0.0083 15.4 0.4 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others UbiA PF01040.18 gi|389846956|ref|YP_006349195.1| - 7.3e-45 153.2 19.6 9.1e-45 152.9 19.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF835 PF05763.12 gi|389846957|ref|YP_006349196.1| - 1.4e-05 24.8 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) ATPase PF06745.13 gi|389846957|ref|YP_006349196.1| - 2.9e-05 23.5 0.0 5.7e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|389846957|ref|YP_006349196.1| - 0.023 13.8 0.0 0.025 13.7 0.0 1.1 1 0 0 1 1 1 0 PAXNEB protein AAA_35 PF14516.6 gi|389846957|ref|YP_006349196.1| - 0.13 11.0 0.0 0.26 10.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain CoA_binding_2 PF13380.6 gi|389846958|ref|YP_006349197.1| - 1.9e-39 134.8 0.0 2.1e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|389846958|ref|YP_006349197.1| - 6.9e-05 23.5 0.0 0.00011 22.8 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.17 gi|389846958|ref|YP_006349197.1| - 0.1 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA PALP PF00291.25 gi|389846959|ref|YP_006349198.1| - 5.7e-60 203.2 0.3 6.4e-60 203.1 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GldM_N PF12081.8 gi|389846960|ref|YP_006349199.1| - 0.00016 21.8 2.4 0.00018 21.7 2.4 1.1 1 0 0 1 1 1 1 GldM N-terminal domain Spc7 PF08317.11 gi|389846960|ref|YP_006349199.1| - 0.00018 20.5 5.2 0.0002 20.3 5.2 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Med9 PF07544.13 gi|389846960|ref|YP_006349199.1| - 0.0011 19.0 2.2 0.0019 18.3 2.2 1.4 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 DegS PF05384.11 gi|389846960|ref|YP_006349199.1| - 0.0031 17.0 4.3 0.0037 16.8 4.3 1.1 1 0 0 1 1 1 1 Sensor protein DegS BLOC1_2 PF10046.9 gi|389846960|ref|YP_006349199.1| - 0.0075 16.5 1.7 0.01 16.1 1.7 1.3 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Ax_dynein_light PF10211.9 gi|389846960|ref|YP_006349199.1| - 0.0076 16.2 3.7 0.0095 15.9 3.7 1.1 1 0 0 1 1 1 1 Axonemal dynein light chain YabA PF06156.13 gi|389846960|ref|YP_006349199.1| - 0.016 15.8 0.9 0.019 15.6 0.9 1.2 1 0 0 1 1 1 0 Initiation control protein YabA Sec34 PF04136.15 gi|389846960|ref|YP_006349199.1| - 0.019 14.8 0.4 0.026 14.4 0.4 1.1 1 0 0 1 1 1 0 Sec34-like family Snapin_Pallidin PF14712.6 gi|389846960|ref|YP_006349199.1| - 0.022 15.2 0.3 0.048 14.1 0.3 1.5 1 0 0 1 1 1 0 Snapin/Pallidin DUF1664 PF07889.12 gi|389846960|ref|YP_006349199.1| - 0.022 14.8 1.0 0.031 14.3 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) LOH1CR12 PF10158.9 gi|389846960|ref|YP_006349199.1| - 0.028 14.5 0.5 0.041 13.9 0.4 1.3 1 1 0 1 1 1 0 Tumour suppressor protein Atg14 PF10186.9 gi|389846960|ref|YP_006349199.1| - 0.042 12.9 0.7 0.045 12.8 0.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DASH_Duo1 PF08651.10 gi|389846960|ref|YP_006349199.1| - 0.052 13.3 0.7 0.071 12.9 0.4 1.4 1 1 0 1 1 1 0 DASH complex subunit Duo1 COG2 PF06148.11 gi|389846960|ref|YP_006349199.1| - 0.057 13.5 1.2 0.068 13.3 1.2 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 PhoU PF01895.19 gi|389846960|ref|YP_006349199.1| - 0.061 13.8 4.1 0.11 12.9 4.1 1.5 1 0 0 1 1 1 0 PhoU domain Cep57_CLD_2 PF14197.6 gi|389846960|ref|YP_006349199.1| - 0.065 13.3 5.7 0.18 11.9 5.7 1.7 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 TPR_MLP1_2 PF07926.12 gi|389846960|ref|YP_006349199.1| - 0.078 13.0 7.8 0.11 12.5 7.4 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF2018 PF09442.10 gi|389846960|ref|YP_006349199.1| - 0.1 13.6 1.9 0.14 13.2 0.6 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2018) TMPIT PF07851.13 gi|389846960|ref|YP_006349199.1| - 0.14 11.3 0.7 0.16 11.2 0.7 1.0 1 0 0 1 1 1 0 TMPIT-like protein Spc24 PF08286.11 gi|389846960|ref|YP_006349199.1| - 0.8 10.0 6.3 1.5 9.1 6.3 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Cwf_Cwc_15 PF04889.12 gi|389846960|ref|YP_006349199.1| - 2 8.1 11.0 2.4 7.8 11.0 1.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein XhlA PF10779.9 gi|389846960|ref|YP_006349199.1| - 5 7.4 10.3 0.2 11.9 2.9 2.3 2 2 1 3 3 3 0 Haemolysin XhlA ABC2_membrane_3 PF12698.7 gi|389846961|ref|YP_006349200.1| - 2.4e-12 46.6 0.0 3.3e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|389846961|ref|YP_006349200.1| - 2.7e-11 43.3 1.2 2.9e-11 43.2 0.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389846961|ref|YP_006349200.1| - 0.00091 19.2 5.9 0.00096 19.2 2.8 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein DXP_reductoisom PF02670.16 gi|389846961|ref|YP_006349200.1| - 0.067 13.9 0.9 0.59 10.9 0.1 2.4 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABC2_membrane_5 PF13346.6 gi|389846961|ref|YP_006349200.1| - 0.8 9.2 4.1 0.3 10.6 1.3 1.6 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389846962|ref|YP_006349201.1| - 0.0043 16.2 16.9 0.0043 16.2 16.9 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein Amastin PF07344.11 gi|389846962|ref|YP_006349201.1| - 6.1 6.7 10.7 0.62 9.9 0.4 2.5 2 0 0 2 2 2 0 Amastin surface glycoprotein ABC_tran PF00005.27 gi|389846963|ref|YP_006349202.1| - 8.5e-28 97.6 0.0 1.4e-27 96.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389846963|ref|YP_006349202.1| - 4.8e-12 46.3 0.0 1.7e-05 24.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389846963|ref|YP_006349202.1| - 2.6e-07 31.3 0.0 9.2e-07 29.5 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|389846963|ref|YP_006349202.1| - 0.00035 21.1 0.1 0.00055 20.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|389846963|ref|YP_006349202.1| - 0.0029 17.3 0.6 0.0068 16.1 0.2 2.0 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|389846963|ref|YP_006349202.1| - 0.017 15.4 0.1 0.051 13.8 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|389846963|ref|YP_006349202.1| - 0.019 14.7 0.0 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|389846963|ref|YP_006349202.1| - 0.023 14.3 0.2 0.041 13.5 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|389846963|ref|YP_006349202.1| - 0.036 14.3 2.4 1 9.6 0.6 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|389846963|ref|YP_006349202.1| - 0.068 12.9 0.2 0.34 10.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|389846963|ref|YP_006349202.1| - 0.07 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389846963|ref|YP_006349202.1| - 0.13 12.0 0.2 0.23 11.2 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389846963|ref|YP_006349202.1| - 0.18 11.2 0.2 2.5 7.5 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain 3HCDH_N PF02737.18 gi|662859452|ref|YP_006349203.2| - 4.6e-63 212.3 0.4 6.1e-63 212.0 0.4 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|662859452|ref|YP_006349203.2| - 8.2e-33 112.9 0.2 8.1e-32 109.7 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|662859452|ref|YP_006349203.2| - 0.0026 18.0 0.9 0.0041 17.3 0.9 1.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|662859452|ref|YP_006349203.2| - 0.0068 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|662859452|ref|YP_006349203.2| - 0.019 14.6 0.4 0.027 14.1 0.4 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Phage_XkdX PF09693.10 gi|662859452|ref|YP_006349203.2| - 0.026 14.5 0.0 5.3 7.2 0.0 2.5 2 0 0 2 2 2 0 Phage uncharacterised protein (Phage_XkdX) AlaDh_PNT_C PF01262.21 gi|662859452|ref|YP_006349203.2| - 0.072 12.4 0.3 0.11 11.8 0.3 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|662859452|ref|YP_006349203.2| - 0.1 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|662859452|ref|YP_006349203.2| - 0.12 13.0 0.8 0.3 11.7 0.8 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent HHH_5 PF14520.6 gi|389846965|ref|YP_006349204.1| - 1.5e-05 25.5 0.0 0.0072 16.9 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|389846965|ref|YP_006349204.1| - 0.00012 22.3 0.0 0.00025 21.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|389846965|ref|YP_006349204.1| - 0.16 12.2 0.0 1.6 9.0 0.0 2.1 2 0 0 2 2 2 0 Pathogenicity locus FBPase PF00316.20 gi|389846967|ref|YP_006349206.1| - 1.1e-25 90.2 0.0 1.7e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|389846967|ref|YP_006349206.1| - 0.0046 16.5 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Inositol monophosphatase family Carboxyl_trans PF01039.22 gi|662859453|ref|YP_006349207.2| - 1.6e-130 436.1 0.0 2e-130 435.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MaoC_dehydratas PF01575.19 gi|389846970|ref|YP_006349209.1| - 2.1e-26 91.9 0.1 2.8e-26 91.5 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389846970|ref|YP_006349209.1| - 9.4e-05 22.6 0.2 0.00061 19.9 0.2 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase ELFV_dehydrog PF00208.21 gi|389846971|ref|YP_006349210.1| - 1e-71 241.5 0.0 1.3e-71 241.1 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|389846971|ref|YP_006349210.1| - 7.7e-56 187.5 0.0 1.4e-55 186.7 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|389846971|ref|YP_006349210.1| - 0.0046 16.3 0.0 0.0087 15.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389846971|ref|YP_006349210.1| - 0.041 14.3 0.0 0.075 13.5 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.12 gi|389846971|ref|YP_006349210.1| - 0.046 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain HpcH_HpaI PF03328.14 gi|662859455|ref|YP_006349211.2| - 2.4e-53 180.5 5.7 3.1e-53 180.2 5.7 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|662859455|ref|YP_006349211.2| - 3.5e-10 39.6 0.0 1.7e-05 24.2 0.0 2.2 2 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ATPgrasp_N PF18130.1 gi|662859455|ref|YP_006349211.2| - 0.58 10.7 6.3 0.96 10.0 0.9 2.8 1 1 2 3 3 3 0 ATP-grasp N-terminal domain ELFV_dehydrog PF00208.21 gi|389846973|ref|YP_006349212.1| - 2.6e-76 256.5 0.3 3.6e-76 256.1 0.3 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|389846973|ref|YP_006349212.1| - 9.5e-55 184.0 0.0 1.7e-54 183.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|389846973|ref|YP_006349212.1| - 0.0014 18.0 0.1 0.0028 17.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HHH_8 PF14716.6 gi|389846973|ref|YP_006349212.1| - 0.11 12.8 0.2 0.39 11.1 0.1 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain OTCace_N PF02729.21 gi|389846974|ref|YP_006349213.1| - 2.8e-45 154.0 0.0 5e-45 153.1 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|389846974|ref|YP_006349213.1| - 4.5e-30 104.8 0.0 6.1e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|389846975|ref|YP_006349214.1| - 1.7e-33 114.7 0.6 2.3e-33 114.3 0.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|389846975|ref|YP_006349214.1| - 1.3e-14 53.8 1.3 2.3e-14 53.0 1.3 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PAS_4 PF08448.10 gi|389846976|ref|YP_006349215.1| - 5e-16 58.9 0.1 3.6e-15 56.2 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|389846976|ref|YP_006349215.1| - 6.5e-16 58.8 0.0 4.3e-15 56.2 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389846976|ref|YP_006349215.1| - 8.8e-12 44.9 0.4 2.6e-11 43.4 0.4 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|389846976|ref|YP_006349215.1| - 3.4e-11 43.2 0.0 7.1e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|389846976|ref|YP_006349215.1| - 1.6e-08 34.7 0.0 3.8e-08 33.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.24 gi|389846976|ref|YP_006349215.1| - 3.7e-08 33.5 0.0 9.2e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|389846976|ref|YP_006349215.1| - 5.4e-06 26.6 0.0 1.1e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.15 gi|389846976|ref|YP_006349215.1| - 1.4e-05 25.3 0.0 5.8e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain SPOB_a PF14689.6 gi|389846976|ref|YP_006349215.1| - 0.0011 18.6 0.1 0.0025 17.5 0.1 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|389846976|ref|YP_006349215.1| - 0.0019 18.3 0.0 0.0069 16.5 0.0 2.1 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|389846976|ref|YP_006349215.1| - 0.077 13.1 0.0 0.3 11.1 0.0 2.1 1 0 0 1 1 1 0 PAS domain GHL10 PF02638.15 gi|389846977|ref|YP_006349216.1| - 0.054 12.6 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase-like 10 DUF4838 PF16126.5 gi|389846977|ref|YP_006349216.1| - 0.058 12.8 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4838) adh_short_C2 PF13561.6 gi|389846978|ref|YP_006349217.1| - 4.8e-77 258.7 0.3 5.4e-77 258.5 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389846978|ref|YP_006349217.1| - 5.6e-60 202.1 0.3 6.7e-60 201.9 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389846978|ref|YP_006349217.1| - 1.1e-12 48.2 0.1 1.7e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389846978|ref|YP_006349217.1| - 0.0051 16.3 0.1 0.011 15.2 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|389846978|ref|YP_006349217.1| - 0.11 12.3 0.2 0.19 11.6 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThuA PF06283.11 gi|662859456|ref|YP_006349218.2| - 2.9e-32 112.6 0.0 3.5e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 Trehalose utilisation ECH_1 PF00378.20 gi|389846980|ref|YP_006349219.1| - 1.4e-49 168.7 0.0 1.6e-49 168.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389846980|ref|YP_006349219.1| - 6.9e-29 101.4 0.4 3.2e-28 99.2 0.3 1.7 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase MR_MLE_C PF13378.6 gi|389846981|ref|YP_006349220.1| - 8.5e-49 166.1 3.3 1.5e-48 165.3 3.3 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389846981|ref|YP_006349220.1| - 3.7e-06 27.1 1.8 6.3e-05 23.2 1.8 2.3 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|389846982|ref|YP_006349221.1| - 2.6e-39 135.0 19.0 3.2e-39 134.7 19.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF5362 PF17319.2 gi|389846982|ref|YP_006349221.1| - 1 9.3 0.0 1 9.3 0.0 2.8 4 0 0 4 4 4 0 Family of unknown function (DUF5362) DUF373 PF04123.13 gi|389846982|ref|YP_006349221.1| - 1.8 7.9 9.4 1.6 8.1 8.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Pyr_redox_2 PF07992.14 gi|389846983|ref|YP_006349222.1| - 4e-08 32.8 0.1 9.8e-08 31.6 0.1 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389846983|ref|YP_006349222.1| - 1.8e-06 27.5 0.7 0.023 14.0 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|389846983|ref|YP_006349222.1| - 3.7e-06 26.4 0.2 1.4e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|389846983|ref|YP_006349222.1| - 4.3e-05 22.7 0.4 0.033 13.2 0.0 2.4 3 0 0 3 3 3 2 Lycopene cyclase protein GIDA PF01134.22 gi|389846983|ref|YP_006349222.1| - 8.9e-05 21.7 0.2 0.0002 20.5 0.0 1.6 1 1 1 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|389846983|ref|YP_006349222.1| - 0.00031 19.6 0.0 0.0063 15.3 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|389846983|ref|YP_006349222.1| - 0.00033 19.9 0.3 0.0014 17.8 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|389846983|ref|YP_006349222.1| - 0.00048 19.6 3.2 0.00065 19.2 0.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|389846983|ref|YP_006349222.1| - 0.0016 18.6 0.8 0.003 17.8 0.1 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|389846983|ref|YP_006349222.1| - 0.0034 16.7 0.0 0.0084 15.4 0.0 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 gi|389846983|ref|YP_006349222.1| - 0.015 15.3 2.3 0.17 11.9 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding DAO PF01266.24 gi|389846983|ref|YP_006349222.1| - 0.035 13.7 0.6 0.035 13.7 0.6 2.9 2 1 1 3 3 3 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|389846983|ref|YP_006349222.1| - 0.085 13.4 0.1 0.33 11.6 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|389846983|ref|YP_006349222.1| - 1.9 7.2 4.5 7.1 5.3 0.1 2.1 1 1 1 2 2 2 0 Tryptophan halogenase Peripla_BP_2 PF01497.18 gi|389846984|ref|YP_006349223.1| - 6.4e-30 104.5 1.0 7.6e-30 104.2 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein ECH_1 PF00378.20 gi|389846985|ref|YP_006349224.1| - 9.7e-54 182.3 0.0 1.5e-52 178.4 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389846985|ref|YP_006349224.1| - 5.6e-16 59.0 0.1 3.1e-15 56.5 0.0 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase CAP PF00188.26 gi|389846985|ref|YP_006349224.1| - 0.13 13.1 0.1 0.55 11.1 0.0 1.9 2 0 0 2 2 2 0 Cysteine-rich secretory protein family TPP_enzyme_N PF02776.18 gi|389846987|ref|YP_006349226.1| - 6.4e-36 123.6 0.0 1.2e-35 122.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|389846987|ref|YP_006349226.1| - 2.6e-09 37.1 0.0 3.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|389846987|ref|YP_006349226.1| - 6.3e-07 29.3 0.0 1.6e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TrbC_Ftype PF09673.10 gi|389846987|ref|YP_006349226.1| - 0.0056 16.7 0.1 0.4 10.8 0.0 2.3 2 0 0 2 2 2 1 Type-F conjugative transfer system pilin assembly protein adh_short PF00106.25 gi|389846987|ref|YP_006349226.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389846987|ref|YP_006349226.1| - 0.077 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Chorismate_bind PF00425.18 gi|662859457|ref|YP_006349227.2| - 2.8e-72 243.4 0.0 3.8e-72 242.9 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.19 gi|389846990|ref|YP_006349229.1| - 7e-37 126.7 0.0 9.1e-37 126.3 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TetR_N PF00440.23 gi|389846990|ref|YP_006349229.1| - 0.073 12.9 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family IclR PF01614.18 gi|389846991|ref|YP_006349230.1| - 0.089 12.6 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator UPF0058 PF01893.16 gi|389846992|ref|YP_006349231.1| - 6.6e-33 112.9 0.4 7.3e-33 112.7 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 T7SS_ESX_EspC PF10824.8 gi|389846992|ref|YP_006349231.1| - 0.052 14.0 0.0 0.073 13.6 0.0 1.2 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm Rhomboid PF01694.22 gi|389846993|ref|YP_006349232.1| - 1e-08 35.3 14.1 1e-08 35.3 14.1 2.7 2 1 0 2 2 2 1 Rhomboid family DUF389 PF04087.14 gi|389846993|ref|YP_006349232.1| - 1 9.4 7.9 0.12 12.4 0.3 3.0 2 1 0 3 3 3 0 Domain of unknown function (DUF389) MTS PF05175.14 gi|389846994|ref|YP_006349233.1| - 3.2e-10 39.8 0.0 5.1e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|389846994|ref|YP_006349233.1| - 4.3e-10 40.2 0.0 1.2e-09 38.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|389846994|ref|YP_006349233.1| - 1.3e-09 38.1 0.1 1.3e-08 34.7 0.1 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|389846994|ref|YP_006349233.1| - 1.1e-08 34.9 0.0 1.4e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|389846994|ref|YP_006349233.1| - 1.1e-08 35.0 0.0 1.1e-07 31.7 0.0 1.9 1 1 1 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|389846994|ref|YP_006349233.1| - 2.9e-08 33.7 0.0 4.4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389846994|ref|YP_006349233.1| - 9e-07 29.5 0.0 1.9e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389846994|ref|YP_006349233.1| - 6.7e-05 22.3 0.0 8.3e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|389846994|ref|YP_006349233.1| - 0.0003 20.6 0.0 0.00042 20.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|389846994|ref|YP_006349233.1| - 0.00046 20.0 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|389846994|ref|YP_006349233.1| - 0.0019 17.8 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|389846994|ref|YP_006349233.1| - 0.002 17.6 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.6 gi|389846994|ref|YP_006349233.1| - 0.0026 17.8 0.0 0.0029 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389846994|ref|YP_006349233.1| - 0.0026 17.6 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|389846994|ref|YP_006349233.1| - 0.0041 16.3 0.0 0.0071 15.5 0.0 1.4 2 0 0 2 2 2 1 O-methyltransferase RrnaAD PF00398.20 gi|389846994|ref|YP_006349233.1| - 0.0085 15.2 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|389846994|ref|YP_006349233.1| - 0.016 14.6 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MDMPI_N PF11716.8 gi|389846994|ref|YP_006349233.1| - 0.052 14.2 7.1 0.041 14.6 4.7 1.9 1 1 1 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain STAS_2 PF13466.6 gi|662859458|ref|YP_006349234.2| - 0.023 15.0 3.0 0.039 14.3 0.6 2.1 2 0 0 2 2 2 0 STAS domain AP_endonuc_2 PF01261.24 gi|662859458|ref|YP_006349234.2| - 0.047 13.1 0.1 0.054 12.9 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel CAP59_mtransfer PF11735.8 gi|662859458|ref|YP_006349234.2| - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 LTD PF00932.19 gi|389846996|ref|YP_006349235.1| - 7.1e-24 84.3 5.8 8.3e-24 84.1 4.5 1.8 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|389846996|ref|YP_006349235.1| - 1.2e-19 70.7 0.0 2.1e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue TFIIB PF00382.19 gi|662859459|ref|YP_006349236.2| - 3.5e-44 148.7 1.8 4.1e-24 84.4 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|662859459|ref|YP_006349236.2| - 6.9e-19 67.1 1.5 1.1e-18 66.4 1.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|662859459|ref|YP_006349236.2| - 0.00066 19.3 0.3 0.0012 18.5 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|662859459|ref|YP_006349236.2| - 0.00075 19.2 1.5 0.0016 18.1 1.5 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|662859459|ref|YP_006349236.2| - 0.0098 16.0 1.3 0.57 10.3 0.3 2.5 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|662859459|ref|YP_006349236.2| - 0.01 15.7 0.4 0.03 14.3 0.4 1.8 2 0 0 2 2 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|662859459|ref|YP_006349236.2| - 0.015 14.7 3.8 0.21 11.1 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Sigma70_r4 PF04545.16 gi|662859459|ref|YP_006349236.2| - 0.016 14.7 1.0 0.36 10.4 0.1 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 PhnA_Zn_Ribbon PF08274.12 gi|662859459|ref|YP_006349236.2| - 0.03 14.3 1.7 0.062 13.3 1.7 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-RRN7 PF11781.8 gi|662859459|ref|YP_006349236.2| - 0.052 13.2 1.1 0.091 12.5 1.1 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|662859459|ref|YP_006349236.2| - 0.059 13.5 0.0 0.45 10.6 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Lar_restr_allev PF14354.6 gi|662859459|ref|YP_006349236.2| - 0.08 13.3 0.2 0.2 12.1 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar HTH_23 PF13384.6 gi|662859459|ref|YP_006349236.2| - 0.08 12.8 0.4 0.74 9.7 0.1 2.8 3 0 0 3 3 2 0 Homeodomain-like domain DZR PF12773.7 gi|662859459|ref|YP_006349236.2| - 0.12 12.5 0.5 0.26 11.4 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon Trm112p PF03966.16 gi|662859459|ref|YP_006349236.2| - 0.19 12.3 0.3 0.65 10.6 0.3 1.9 1 0 0 1 1 1 0 Trm112p-like protein DUF1178 PF06676.11 gi|662859459|ref|YP_006349236.2| - 0.32 11.4 2.4 19 5.6 2.4 3.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1178) zf-trcl PF13451.6 gi|662859459|ref|YP_006349236.2| - 3 7.8 6.2 1.6 8.7 0.5 2.5 1 1 1 2 2 2 0 Probable zinc-ribbon domain PMT_2 PF13231.6 gi|662859460|ref|YP_006349237.2| - 7e-07 29.6 4.3 7e-07 29.6 4.3 3.0 2 1 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Usp PF00582.26 gi|389847000|ref|YP_006349239.1| - 1.9e-36 125.7 1.4 2.5e-36 125.3 1.4 1.2 1 0 0 1 1 1 1 Universal stress protein family Fer2 PF00111.27 gi|389847001|ref|YP_006349240.1| - 1.1e-11 44.5 2.6 1.4e-11 44.2 2.6 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|389847001|ref|YP_006349240.1| - 0.011 15.7 0.2 0.013 15.5 0.2 1.1 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 gi|389847001|ref|YP_006349240.1| - 0.088 12.6 1.0 0.26 11.1 0.2 2.1 3 0 0 3 3 3 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Lactamase_B PF00753.27 gi|389847002|ref|YP_006349241.1| - 2.3e-14 53.8 3.7 4.5e-14 52.9 3.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|389847002|ref|YP_006349241.1| - 6.9e-12 45.8 0.0 1.3e-11 44.9 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|389847002|ref|YP_006349241.1| - 0.0011 18.5 0.8 0.0026 17.3 0.8 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MCPsignal PF00015.21 gi|389847003|ref|YP_006349242.1| - 1.9e-42 145.0 47.5 5.3e-41 140.3 23.5 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|389847003|ref|YP_006349242.1| - 6.2e-27 94.4 2.7 1.4e-26 93.3 0.4 2.6 2 1 0 2 2 2 1 Protoglobin DUF948 PF06103.11 gi|389847003|ref|YP_006349242.1| - 6.1e-06 26.4 28.8 0.0021 18.3 1.3 4.8 4 1 1 5 5 4 3 Bacterial protein of unknown function (DUF948) RPW8 PF05659.11 gi|389847003|ref|YP_006349242.1| - 0.026 14.2 3.0 13 5.5 0.1 3.5 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF1664 PF07889.12 gi|389847003|ref|YP_006349242.1| - 0.062 13.3 24.4 0.24 11.4 1.8 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) DASH_Duo1 PF08651.10 gi|389847003|ref|YP_006349242.1| - 0.27 11.0 0.1 0.27 11.0 0.1 3.0 3 1 1 4 4 4 0 DASH complex subunit Duo1 Syntaxin_2 PF14523.6 gi|389847003|ref|YP_006349242.1| - 0.31 11.5 7.6 1.1 9.7 0.1 3.6 3 1 0 3 3 3 0 Syntaxin-like protein BLOC1_2 PF10046.9 gi|389847003|ref|YP_006349242.1| - 0.31 11.3 18.8 0.31 11.3 0.7 4.5 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|389847003|ref|YP_006349242.1| - 0.47 10.5 33.0 1.6 8.7 1.8 4.8 2 2 1 4 4 4 0 Laminin Domain II Spc7 PF08317.11 gi|389847003|ref|YP_006349242.1| - 1.1 8.1 23.4 0.76 8.6 9.9 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein Lebercilin PF15619.6 gi|389847003|ref|YP_006349242.1| - 1.2 8.8 13.5 0.1 12.3 5.2 2.7 1 1 2 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease DASH_Dad2 PF08654.10 gi|389847003|ref|YP_006349242.1| - 1.2 9.5 16.6 0.22 12.0 0.9 3.7 1 1 2 3 3 3 0 DASH complex subunit Dad2 FH2 PF02181.23 gi|389847003|ref|YP_006349242.1| - 2.5 7.2 10.1 2 7.5 3.0 2.4 2 0 0 2 2 2 0 Formin Homology 2 Domain Tht1 PF04163.12 gi|389847003|ref|YP_006349242.1| - 4 6.1 8.0 0.79 8.4 0.3 2.6 3 0 0 3 3 3 0 Tht1-like nuclear fusion protein DUF489 PF04356.12 gi|389847003|ref|YP_006349242.1| - 4.5 7.3 6.3 1 9.3 1.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF489) Cauli_AT PF03233.13 gi|389847003|ref|YP_006349242.1| - 4.8 7.1 12.3 23 4.9 0.2 4.1 2 2 2 4 4 4 0 Aphid transmission protein Med9 PF07544.13 gi|389847003|ref|YP_006349242.1| - 5 7.3 10.9 5.7 7.1 0.3 4.0 4 0 0 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 ZYG-11_interact PF05884.12 gi|389847003|ref|YP_006349242.1| - 7 6.0 10.9 7.7 5.8 2.5 2.4 2 1 0 2 2 2 0 Interactor of ZYG-11 COG2 PF06148.11 gi|389847003|ref|YP_006349242.1| - 7.6 6.6 19.3 4.4 7.4 2.1 4.5 2 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 TMPIT PF07851.13 gi|389847003|ref|YP_006349242.1| - 9 5.4 10.3 4.1 6.6 1.7 2.7 1 1 0 2 2 2 0 TMPIT-like protein Rubrerythrin PF02915.17 gi|389847004|ref|YP_006349243.1| - 0.0044 17.4 0.7 0.0099 16.3 0.4 1.7 2 0 0 2 2 2 1 Rubrerythrin DUF1657 PF07870.11 gi|389847004|ref|YP_006349243.1| - 0.0095 15.8 0.1 0.023 14.6 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1657) MOSC PF03473.17 gi|662859461|ref|YP_006349244.2| - 5.8e-06 26.4 0.0 9.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 MOSC domain GalKase_gal_bdg PF10509.9 gi|389847006|ref|YP_006349245.1| - 1.5e-16 59.6 0.1 3e-16 58.7 0.1 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.13 gi|389847006|ref|YP_006349245.1| - 5.4e-14 52.3 0.3 1.4e-13 51.0 0.3 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|389847006|ref|YP_006349245.1| - 8.1e-10 38.8 1.7 8.1e-10 38.8 1.7 2.5 3 0 0 3 3 3 1 GHMP kinases N terminal domain FmdA_AmdA PF03069.15 gi|389847007|ref|YP_006349246.1| - 8.9e-70 235.4 0.0 3.1e-35 121.7 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family MR_MLE_C PF13378.6 gi|389847008|ref|YP_006349247.1| - 1.1e-54 185.3 0.6 1.6e-54 184.8 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389847008|ref|YP_006349247.1| - 6.4e-15 55.4 0.1 3e-14 53.2 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SBP_bac_11 PF13531.6 gi|389847008|ref|YP_006349247.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Amidohydro_2 PF04909.14 gi|389847008|ref|YP_006349247.1| - 0.078 12.7 0.8 0.14 11.9 0.2 1.7 2 0 0 2 2 2 0 Amidohydrolase Hydrolase_3 PF08282.12 gi|389847010|ref|YP_006349249.1| - 1.4e-09 38.1 0.0 0.0012 18.7 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|389847010|ref|YP_006349249.1| - 0.0011 18.6 0.0 0.067 12.7 0.0 2.5 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|389847010|ref|YP_006349249.1| - 0.045 14.0 0.5 0.81 9.9 0.1 2.5 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Bac_DnaA PF00308.18 gi|389847010|ref|YP_006349249.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein Innate_immun PF12782.7 gi|389847011|ref|YP_006349250.1| - 0.0077 15.8 0.7 0.0095 15.5 0.7 1.1 1 0 0 1 1 1 1 Invertebrate innate immunity transcript family PAS_4 PF08448.10 gi|389847012|ref|YP_006349251.1| - 9.6e-41 138.5 4.3 1.3e-15 57.6 0.1 4.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|389847012|ref|YP_006349251.1| - 2.5e-23 82.2 0.1 3.9e-09 36.5 0.0 4.1 3 0 0 3 3 3 3 PAS fold GAF_2 PF13185.6 gi|389847012|ref|YP_006349251.1| - 9.6e-22 77.8 1.4 5.8e-11 42.9 0.3 3.3 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.6 gi|389847012|ref|YP_006349251.1| - 3.5e-18 66.2 0.0 8.9e-09 35.8 0.0 3.2 3 0 0 3 3 2 2 GAF domain PAS_9 PF13426.7 gi|389847012|ref|YP_006349251.1| - 1.2e-17 64.0 0.0 6.4e-08 32.8 0.0 3.9 4 0 0 4 4 3 3 PAS domain HATPase_c PF02518.26 gi|389847012|ref|YP_006349251.1| - 2.2e-16 60.4 0.1 5.9e-16 59.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|389847012|ref|YP_006349251.1| - 3.8e-16 58.7 0.1 2.6e-06 27.3 0.0 4.0 3 0 0 3 3 3 3 PAS domain GAF PF01590.26 gi|389847012|ref|YP_006349251.1| - 3.7e-15 56.7 0.0 2e-08 34.9 0.0 3.0 3 0 0 3 3 2 2 GAF domain HisKA PF00512.25 gi|389847012|ref|YP_006349251.1| - 4.7e-14 52.2 6.4 8.7e-13 48.1 0.1 3.9 5 0 0 5 5 4 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|389847012|ref|YP_006349251.1| - 1.4e-10 41.3 2.1 1.8e-10 41.0 0.2 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_3 PF08447.12 gi|389847012|ref|YP_006349251.1| - 1.2e-07 31.9 0.0 4.2e-06 27.0 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.7 gi|389847012|ref|YP_006349251.1| - 0.035 14.3 2.6 6 7.1 0.0 4.3 3 2 0 3 3 3 0 PAS fold HATPase_c_2 PF13581.6 gi|389847012|ref|YP_006349251.1| - 0.044 13.8 0.1 0.15 12.1 0.1 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.15 gi|389847012|ref|YP_006349251.1| - 0.062 13.6 0.1 0.29 11.4 0.1 2.2 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_12 PF18095.1 gi|389847012|ref|YP_006349251.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|389847012|ref|YP_006349251.1| - 0.13 12.1 0.0 0.36 10.7 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3090 PF11290.8 gi|389847012|ref|YP_006349251.1| - 0.13 12.1 3.1 5.5 6.8 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3090) B12-binding PF02310.19 gi|389847012|ref|YP_006349251.1| - 0.14 12.2 0.4 3.8 7.6 0.0 2.8 3 0 0 3 3 3 0 B12 binding domain GCN5L1 PF06320.13 gi|389847012|ref|YP_006349251.1| - 1.8 8.7 4.4 7.4 6.8 0.2 3.1 3 0 0 3 3 3 0 GCN5-like protein 1 (GCN5L1) F_bP_aldolase PF01116.20 gi|389847013|ref|YP_006349252.1| - 1e-74 251.5 0.0 1.2e-74 251.3 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PEP_hydrolase PF09370.10 gi|389847013|ref|YP_006349252.1| - 0.01 15.1 0.1 0.08 12.1 0.0 2.1 2 1 0 2 2 2 1 Phosphoenolpyruvate hydrolase-like PTS_IIB PF02302.17 gi|389847014|ref|YP_006349253.1| - 5.4e-17 62.3 1.1 9.5e-17 61.5 1.1 1.4 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.18 gi|389847015|ref|YP_006349254.1| - 5.2e-100 334.3 0.0 7.1e-100 333.9 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|389847015|ref|YP_006349254.1| - 4.7e-26 91.2 0.1 4.7e-26 91.2 0.1 2.7 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|389847015|ref|YP_006349254.1| - 6.6e-24 83.4 0.8 2.1e-23 81.8 0.6 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 gi|389847016|ref|YP_006349255.1| - 3e-24 85.0 0.2 3.3e-24 84.9 0.2 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.22 gi|389847017|ref|YP_006349256.1| - 6e-36 123.5 0.0 6.6e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Band_3_cyto PF07565.13 gi|389847017|ref|YP_006349256.1| - 0.041 13.7 0.0 0.076 12.8 0.0 1.3 1 1 0 1 1 1 0 Band 3 cytoplasmic domain PTS_EIIC PF02378.18 gi|389847018|ref|YP_006349257.1| - 7.5e-19 67.9 43.0 2.4e-18 66.3 42.9 1.8 1 1 0 1 1 1 1 Phosphotransferase system, EIIC O-ag_pol_Wzy PF14296.6 gi|389847018|ref|YP_006349257.1| - 0.14 10.8 0.3 0.29 9.7 0.0 1.6 2 0 0 2 2 2 0 O-antigen polysaccharide polymerase Wzy PfkB PF00294.24 gi|389847019|ref|YP_006349258.1| - 1.7e-49 168.8 2.8 2.3e-49 168.3 2.8 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|389847019|ref|YP_006349258.1| - 3.5e-05 23.3 0.0 5.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoRC PF00455.22 gi|389847020|ref|YP_006349259.1| - 3.2e-51 173.4 0.0 4.3e-51 173.0 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|389847020|ref|YP_006349259.1| - 5.4e-17 61.3 0.2 9.6e-17 60.5 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|389847020|ref|YP_006349259.1| - 2.8e-06 27.1 0.1 6.1e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|389847020|ref|YP_006349259.1| - 4.1e-06 26.5 0.1 6.9e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389847020|ref|YP_006349259.1| - 1.7e-05 24.6 0.3 5.4e-05 23.0 0.3 1.8 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|389847020|ref|YP_006349259.1| - 1.7e-05 24.3 0.2 5.3e-05 22.8 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|389847020|ref|YP_006349259.1| - 2.5e-05 23.8 2.9 0.00034 20.1 0.5 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|389847020|ref|YP_006349259.1| - 3.8e-05 23.6 0.2 0.0001 22.3 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389847020|ref|YP_006349259.1| - 0.00014 21.6 0.2 0.00028 20.6 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389847020|ref|YP_006349259.1| - 0.0002 21.2 0.1 0.00047 20.0 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|389847020|ref|YP_006349259.1| - 0.00021 21.2 0.1 0.00045 20.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|389847020|ref|YP_006349259.1| - 0.00031 20.6 0.0 0.00058 19.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|389847020|ref|YP_006349259.1| - 0.00053 20.1 0.2 0.0013 18.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|389847020|ref|YP_006349259.1| - 0.0014 18.5 0.0 0.025 14.5 0.1 2.4 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_23 PF13384.6 gi|389847020|ref|YP_006349259.1| - 0.0028 17.4 0.1 0.0071 16.1 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain DprA_WH PF17782.1 gi|389847020|ref|YP_006349259.1| - 0.0058 16.7 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|389847020|ref|YP_006349259.1| - 0.012 15.6 0.1 0.025 14.5 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF505 PF04458.12 gi|389847020|ref|YP_006349259.1| - 0.013 13.9 0.1 0.017 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Fe_dep_repress PF01325.19 gi|389847020|ref|YP_006349259.1| - 0.043 14.0 0.2 0.11 12.8 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|389847020|ref|YP_006349259.1| - 0.057 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.6 gi|389847020|ref|YP_006349259.1| - 0.1 12.6 0.1 0.31 11.1 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|389847020|ref|YP_006349259.1| - 0.11 12.9 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator LPD26 PF18842.1 gi|389847020|ref|YP_006349259.1| - 0.11 12.5 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 26 DUF3489 PF11994.8 gi|389847020|ref|YP_006349259.1| - 0.11 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HxlR PF01638.17 gi|389847020|ref|YP_006349259.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_AsnC-type PF13404.6 gi|389847020|ref|YP_006349259.1| - 0.34 10.8 2.7 4 7.4 0.3 2.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Iso_dh PF00180.20 gi|389847021|ref|YP_006349260.1| - 9.1e-89 298.0 0.0 1e-88 297.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|389847022|ref|YP_006349261.1| - 1.5e-19 70.6 0.0 2.4e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|389847023|ref|YP_006349262.1| - 3.3e-147 491.2 0.1 3.8e-147 491.0 0.1 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) IlvN PF07991.12 gi|389847025|ref|YP_006349264.1| - 2.9e-69 231.8 0.1 3.9e-69 231.5 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|389847025|ref|YP_006349264.1| - 5.7e-62 208.3 0.1 8.8e-62 207.7 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|389847025|ref|YP_006349264.1| - 1.1e-09 38.8 0.1 2.7e-09 37.5 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|389847025|ref|YP_006349264.1| - 2.3e-08 33.6 0.0 4.1e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|389847025|ref|YP_006349264.1| - 1.4e-06 28.6 0.0 2.7e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Mur_ligase PF01225.25 gi|389847025|ref|YP_006349264.1| - 0.00066 20.0 0.3 0.0018 18.6 0.3 1.7 1 0 0 1 1 1 1 Mur ligase family, catalytic domain ApbA PF02558.16 gi|389847025|ref|YP_006349264.1| - 0.0011 18.6 0.1 0.0022 17.7 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 gi|389847025|ref|YP_006349264.1| - 0.0042 17.2 0.1 0.0084 16.2 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Rossmann-like PF10727.9 gi|389847025|ref|YP_006349264.1| - 0.021 14.7 0.2 0.037 13.9 0.2 1.3 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_7 PF13241.6 gi|389847025|ref|YP_006349264.1| - 0.03 14.7 0.1 0.29 11.6 0.1 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|389847025|ref|YP_006349264.1| - 0.081 12.8 0.4 0.21 11.4 0.3 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|389847025|ref|YP_006349264.1| - 0.099 12.6 0.2 1.8 8.5 0.2 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.22 gi|389847025|ref|YP_006349264.1| - 0.14 13.0 0.1 0.37 11.6 0.1 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|389847025|ref|YP_006349264.1| - 0.29 11.6 1.7 1.3 9.5 0.3 2.5 2 1 1 3 3 3 0 CoA binding domain ALS_ss_C PF10369.9 gi|389847026|ref|YP_006349265.1| - 1.2e-19 70.3 0.0 1.9e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|389847026|ref|YP_006349265.1| - 1.5e-14 53.6 0.0 6.1e-14 51.6 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|389847026|ref|YP_006349265.1| - 1.9e-08 34.0 0.1 5.9e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|389847026|ref|YP_006349265.1| - 0.02 15.5 0.0 0.033 14.8 0.0 1.3 1 0 0 1 1 1 0 ACT domain MCR PF18509.1 gi|389847026|ref|YP_006349265.1| - 1.4 8.5 4.1 0.61 9.7 1.4 1.8 2 0 0 2 2 2 0 Magnetochrome domain TPP_enzyme_N PF02776.18 gi|389847027|ref|YP_006349266.1| - 8.4e-51 172.0 0.5 6.1e-50 169.2 0.5 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|389847027|ref|YP_006349266.1| - 1.5e-50 170.9 0.0 3.4e-50 169.8 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|389847027|ref|YP_006349266.1| - 4.4e-44 149.5 0.1 1.1e-43 148.3 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF953 PF06110.11 gi|389847027|ref|YP_006349266.1| - 0.0077 15.8 0.0 0.41 10.3 0.0 2.3 2 0 0 2 2 2 1 Eukaryotic protein of unknown function (DUF953) CO_dh PF02552.16 gi|389847027|ref|YP_006349266.1| - 0.064 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.19 gi|662859462|ref|YP_006349267.2| - 1.5e-81 273.8 7.0 2.5e-81 273.1 7.0 1.3 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.21 gi|662859462|ref|YP_006349267.2| - 0.00018 22.0 0.5 0.011 16.1 0.1 2.9 2 1 0 2 2 2 1 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|662859462|ref|YP_006349267.2| - 0.0012 18.3 0.6 0.0078 15.7 0.2 2.2 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel RHH_1 PF01402.21 gi|389847032|ref|YP_006349271.1| - 0.0055 16.6 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family ChpA-C PF03777.13 gi|662859464|ref|YP_006349272.2| - 0.043 13.7 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 ChpA-C Glycos_transf_2 PF00535.26 gi|389847034|ref|YP_006349273.1| - 2.3e-18 66.5 0.0 3.8e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389847034|ref|YP_006349273.1| - 2.2e-10 40.8 0.0 3.3e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|389847034|ref|YP_006349273.1| - 1.5e-06 28.6 0.0 2.7e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|389847034|ref|YP_006349273.1| - 0.0013 19.1 0.0 0.0019 18.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain SfLAP PF11139.8 gi|389847034|ref|YP_006349273.1| - 0.0063 16.0 0.2 0.009 15.5 0.2 1.1 1 0 0 1 1 1 1 Sap, sulfolipid-1-addressing protein DAGK_cat PF00781.24 gi|389847034|ref|YP_006349273.1| - 0.2 11.3 1.5 0.85 9.2 0.5 2.2 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain Glyco_tranf_2_3 PF13641.6 gi|389847035|ref|YP_006349274.1| - 1.3e-20 74.3 0.0 2.1e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|389847035|ref|YP_006349274.1| - 1.4e-18 67.3 1.1 2.2e-18 66.6 0.6 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|389847035|ref|YP_006349274.1| - 1.8e-15 57.4 0.0 3.1e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|389847035|ref|YP_006349274.1| - 4.1e-10 39.4 0.0 1.2e-09 37.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 21 Anp1 PF03452.14 gi|389847035|ref|YP_006349274.1| - 0.17 11.2 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Anp1 Glyco_transf_4 PF13439.6 gi|389847036|ref|YP_006349275.1| - 3.4e-30 105.3 5.8 6.9e-30 104.3 5.3 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389847036|ref|YP_006349275.1| - 9.1e-28 97.7 12.2 9.1e-28 97.7 12.2 2.4 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|389847036|ref|YP_006349275.1| - 2.1e-26 92.5 0.0 2.9e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389847036|ref|YP_006349275.1| - 8.2e-21 74.8 0.1 1.9e-20 73.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|389847036|ref|YP_006349275.1| - 3.6e-07 30.3 0.0 6.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|389847036|ref|YP_006349275.1| - 0.0001 22.1 0.4 0.0078 15.9 0.0 2.6 1 1 1 2 2 2 1 Starch synthase catalytic domain Methyltransf_11 PF08241.12 gi|389847037|ref|YP_006349276.1| - 3.4e-08 34.0 0.1 7.4e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389847037|ref|YP_006349276.1| - 0.00018 22.2 0.0 0.00044 20.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389847037|ref|YP_006349276.1| - 0.00083 19.2 0.0 0.00093 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389847037|ref|YP_006349276.1| - 0.0097 16.6 0.0 0.015 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389847037|ref|YP_006349276.1| - 0.013 14.9 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|389847037|ref|YP_006349276.1| - 0.017 14.9 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Sulfatase PF00884.23 gi|389847038|ref|YP_006349277.1| - 2.2e-35 122.5 0.1 2.8e-35 122.2 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|389847038|ref|YP_006349277.1| - 0.0014 18.3 1.1 0.097 12.2 0.5 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|389847038|ref|YP_006349277.1| - 0.0051 15.9 0.1 0.0082 15.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|389847038|ref|YP_006349277.1| - 0.0054 15.4 0.0 0.0097 14.6 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Sulfatase PF00884.23 gi|389847039|ref|YP_006349278.1| - 6.7e-34 117.7 0.1 6.2e-32 111.2 0.1 2.1 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|389847039|ref|YP_006349278.1| - 1.1e-08 35.1 0.6 0.00051 19.7 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|389847039|ref|YP_006349278.1| - 0.0047 16.3 0.1 0.0079 15.6 0.1 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|389847040|ref|YP_006349279.1| - 1.1e-36 127.3 0.1 1.9e-36 126.4 0.1 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Glyco_trans_1_4 PF13692.6 gi|389847041|ref|YP_006349280.1| - 1.1e-22 80.9 0.0 1.8e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|389847041|ref|YP_006349280.1| - 1.1e-21 77.2 0.0 1.7e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|389847041|ref|YP_006349280.1| - 0.0035 17.8 3.2 0.038 14.4 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|389847041|ref|YP_006349280.1| - 0.012 15.7 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|389847041|ref|YP_006349280.1| - 0.099 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Sulfatase PF00884.23 gi|389847042|ref|YP_006349281.1| - 1.6e-47 162.4 0.0 2e-47 162.1 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|389847042|ref|YP_006349281.1| - 1.6e-12 47.7 0.1 4.7e-07 29.7 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|389847042|ref|YP_006349281.1| - 0.00052 18.7 0.1 0.00077 18.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.18 gi|389847042|ref|YP_006349281.1| - 0.043 13.2 0.0 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|389847043|ref|YP_006349282.1| - 1.7e-38 133.1 0.0 4.3e-34 118.7 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|389847043|ref|YP_006349282.1| - 6.5e-05 22.4 0.0 0.00021 20.7 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|389847044|ref|YP_006349283.1| - 1.3e-40 140.1 0.1 1.5e-40 139.9 0.1 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|389847044|ref|YP_006349283.1| - 0.1 11.9 0.4 0.32 10.3 0.2 1.8 2 0 0 2 2 2 0 Metalloenzyme superfamily DUF229 PF02995.17 gi|389847044|ref|YP_006349283.1| - 0.28 9.8 0.1 0.37 9.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Polysacc_synt_3 PF13440.6 gi|389847045|ref|YP_006349284.1| - 1.3e-19 70.5 10.0 1.3e-19 70.5 10.0 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|389847045|ref|YP_006349284.1| - 1.4e-17 64.0 19.5 1.4e-17 64.0 19.5 2.9 2 2 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|389847045|ref|YP_006349284.1| - 1.1e-09 38.5 16.0 1.1e-09 38.5 16.0 3.5 3 0 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|389847045|ref|YP_006349284.1| - 0.00012 20.8 23.6 0.00015 20.5 21.6 2.2 1 1 0 1 1 1 1 Lipid II flippase MurJ STT3 PF02516.14 gi|389847046|ref|YP_006349285.1| - 8.7e-21 74.4 19.6 9.5e-19 67.7 19.6 2.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|389847046|ref|YP_006349285.1| - 1.8e-18 66.6 5.9 1.8e-18 66.6 5.9 2.4 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain DUF368 PF04018.13 gi|389847047|ref|YP_006349286.1| - 9.6e-66 221.9 17.1 1.3e-65 221.5 17.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) DRTGG PF07085.12 gi|389847047|ref|YP_006349286.1| - 0.045 13.5 0.2 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 DRTGG domain TGT_C2 PF14810.6 gi|389847047|ref|YP_006349286.1| - 0.087 13.0 0.1 0.78 9.9 0.0 2.2 2 0 0 2 2 2 0 Patch-forming domain C2 of tRNA-guanine transglycosylase Nucleoporin_FG2 PF15967.5 gi|389847047|ref|YP_006349286.1| - 0.17 10.4 4.1 0.21 10.1 4.1 1.2 1 0 0 1 1 1 0 Nucleoporin FG repeated region Methyltransf_11 PF08241.12 gi|389847048|ref|YP_006349287.1| - 6.3e-20 71.6 0.0 1.1e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389847048|ref|YP_006349287.1| - 2.1e-17 63.6 0.0 3.5e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389847048|ref|YP_006349287.1| - 2.1e-10 40.6 0.0 2.7e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389847048|ref|YP_006349287.1| - 9.2e-09 35.0 0.0 1.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|389847048|ref|YP_006349287.1| - 7.1e-05 23.5 0.0 0.00013 22.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389847048|ref|YP_006349287.1| - 9.7e-05 22.3 0.0 0.00022 21.1 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|389847048|ref|YP_006349287.1| - 0.0011 18.9 0.0 0.0025 17.7 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.20 gi|389847048|ref|YP_006349287.1| - 0.0016 17.6 0.0 0.0019 17.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|389847048|ref|YP_006349287.1| - 0.0069 16.5 0.0 0.014 15.5 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase HCV_NS4a PF01006.20 gi|389847048|ref|YP_006349287.1| - 0.016 15.0 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Methyltransf_24 PF13578.6 gi|389847048|ref|YP_006349287.1| - 0.027 15.5 0.0 0.039 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N_2 PF13602.6 gi|389847048|ref|YP_006349287.1| - 0.033 15.2 0.0 4.1 8.5 0.0 2.2 1 1 1 2 2 2 0 Zinc-binding dehydrogenase DREV PF05219.12 gi|389847048|ref|YP_006349287.1| - 0.049 12.7 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase MTS PF05175.14 gi|389847048|ref|YP_006349287.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain CutA1 PF03091.15 gi|389847050|ref|YP_006349289.1| - 6.6e-14 51.6 0.0 6.6e-14 51.6 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Hydrolase_3 PF08282.12 gi|389847051|ref|YP_006349290.1| - 3.9e-27 95.6 0.0 1.6e-17 64.1 0.1 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389847051|ref|YP_006349290.1| - 2e-06 28.2 0.3 9.8e-05 22.7 0.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|389847051|ref|YP_006349290.1| - 6.9e-06 25.8 0.0 0.00011 21.8 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|389847051|ref|YP_006349290.1| - 0.00043 19.5 0.3 0.0031 16.7 0.1 1.9 2 0 0 2 2 2 1 Trehalose-phosphatase HAD PF12710.7 gi|389847051|ref|YP_006349290.1| - 0.033 14.6 6.7 8.8 6.7 6.7 3.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF4950 PF16308.5 gi|389847051|ref|YP_006349290.1| - 0.039 14.0 0.0 0.088 12.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4950) AAA_16 PF13191.6 gi|662859465|ref|YP_006349291.2| - 1.9e-10 41.4 0.3 7e-10 39.5 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|662859465|ref|YP_006349291.2| - 0.002 18.4 0.0 0.0041 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|662859465|ref|YP_006349291.2| - 0.0057 16.6 0.0 0.0081 16.1 0.0 1.2 1 0 0 1 1 1 1 NTPase RNA_helicase PF00910.22 gi|662859465|ref|YP_006349291.2| - 0.03 14.7 0.0 0.057 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|662859465|ref|YP_006349291.2| - 0.052 13.5 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RP-C PF03428.13 gi|662859465|ref|YP_006349291.2| - 0.066 12.9 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_DeoR PF08220.12 gi|662859465|ref|YP_006349291.2| - 0.077 12.8 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Zein-binding PF04576.15 gi|662859465|ref|YP_006349291.2| - 0.082 13.2 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 Zein-binding AAA_19 PF13245.6 gi|662859465|ref|YP_006349291.2| - 0.12 12.8 0.1 0.22 11.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|662859465|ref|YP_006349291.2| - 0.21 11.9 0.9 1.2 9.6 0.2 2.5 2 2 1 3 3 3 0 AAA C-terminal domain DAO PF01266.24 gi|389847053|ref|YP_006349292.1| - 4.1e-54 184.5 1.4 5.5e-54 184.1 1.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389847053|ref|YP_006349292.1| - 7e-09 35.3 0.3 3.5e-08 33.0 0.3 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.15 gi|389847053|ref|YP_006349292.1| - 8.9e-09 35.6 5.7 9.8e-09 35.4 3.7 2.2 2 0 0 2 2 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.24 gi|389847053|ref|YP_006349292.1| - 1.6e-08 34.1 3.8 2.8e-07 30.0 3.8 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|389847053|ref|YP_006349292.1| - 1.2e-05 24.8 7.8 0.00015 21.1 7.8 2.1 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|389847053|ref|YP_006349292.1| - 0.0031 17.7 0.8 0.019 15.2 0.9 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|389847053|ref|YP_006349292.1| - 0.0082 16.0 0.5 0.017 15.0 0.5 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO_C PF16901.5 gi|389847053|ref|YP_006349292.1| - 0.014 15.2 0.0 0.031 14.1 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase FAD_oxidored PF12831.7 gi|389847053|ref|YP_006349292.1| - 0.029 13.7 6.6 0.15 11.4 6.6 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|389847053|ref|YP_006349292.1| - 0.042 14.4 0.4 0.042 14.4 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase YbjQ_1 PF01906.17 gi|389847053|ref|YP_006349292.1| - 0.075 13.7 0.0 0.18 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding HI0933_like PF03486.14 gi|389847053|ref|YP_006349292.1| - 0.076 11.7 0.4 0.17 10.6 0.2 1.6 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.16 gi|389847053|ref|YP_006349292.1| - 0.11 12.2 0.5 0.24 11.0 0.5 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|389847053|ref|YP_006349292.1| - 0.11 11.7 1.3 0.12 11.6 0.1 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|389847053|ref|YP_006349292.1| - 0.27 10.2 2.7 0.6 9.1 0.1 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 gi|389847053|ref|YP_006349292.1| - 0.5 9.7 4.6 0.53 9.6 0.1 2.8 2 1 0 3 3 3 0 GMC oxidoreductase GIDA PF01134.22 gi|389847053|ref|YP_006349292.1| - 0.89 8.6 3.2 0.57 9.2 0.7 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|389847054|ref|YP_006349293.1| - 5.9e-29 101.4 1.5 8.6e-29 100.9 1.5 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|389847054|ref|YP_006349293.1| - 5.7e-11 42.6 1.6 9.9e-06 25.4 0.0 2.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|389847054|ref|YP_006349293.1| - 8.7e-10 38.5 0.7 3.1e-05 23.5 1.4 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389847054|ref|YP_006349293.1| - 2.3e-08 33.7 0.2 0.00035 19.9 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389847054|ref|YP_006349293.1| - 5.7e-08 31.9 0.2 0.0033 16.2 0.4 2.3 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|389847054|ref|YP_006349293.1| - 7.1e-07 28.6 2.3 2.8e-06 26.7 1.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|389847054|ref|YP_006349293.1| - 0.00052 19.4 0.7 0.00093 18.5 0.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|389847054|ref|YP_006349293.1| - 0.00076 20.0 0.1 0.018 15.6 0.2 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389847054|ref|YP_006349293.1| - 0.0012 18.1 0.2 0.01 15.1 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|389847054|ref|YP_006349293.1| - 0.015 15.7 0.2 0.04 14.4 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|389847054|ref|YP_006349293.1| - 0.076 13.3 0.9 0.21 11.8 0.9 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain CCG PF02754.16 gi|389847055|ref|YP_006349294.1| - 8.3e-24 83.6 0.5 3.5e-11 43.1 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|389847055|ref|YP_006349294.1| - 1.1e-09 38.6 6.2 1.1e-09 38.6 6.2 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|389847055|ref|YP_006349294.1| - 5.4e-06 26.8 7.3 5.4e-06 26.8 7.3 3.4 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389847055|ref|YP_006349294.1| - 0.00015 21.8 15.3 0.00043 20.3 10.7 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389847055|ref|YP_006349294.1| - 0.00064 20.3 11.7 0.00064 20.3 11.7 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389847055|ref|YP_006349294.1| - 0.00092 19.3 10.0 0.00092 19.3 10.0 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain zf-CSL PF05207.13 gi|389847055|ref|YP_006349294.1| - 0.016 14.9 9.8 0.098 12.4 0.0 4.4 5 0 0 5 5 5 0 CSL zinc finger DUF3390 PF11870.8 gi|389847055|ref|YP_006349294.1| - 0.017 15.5 0.0 0.031 14.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) DDE_Tnp_ISAZ013 PF07592.11 gi|389847055|ref|YP_006349294.1| - 0.02 13.9 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain ETF_QO PF05187.13 gi|389847055|ref|YP_006349294.1| - 0.16 12.2 1.3 0.42 10.8 0.1 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_21 PF14697.6 gi|389847055|ref|YP_006349294.1| - 0.93 9.7 12.1 0.49 10.6 0.8 3.2 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389847055|ref|YP_006349294.1| - 1 10.4 18.5 0.52 11.3 12.2 3.2 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|389847055|ref|YP_006349294.1| - 2.2 8.5 10.8 15 5.8 1.7 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain FGGY_N PF00370.21 gi|389847056|ref|YP_006349295.1| - 8.6e-78 261.3 0.0 1.1e-77 260.9 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|389847056|ref|YP_006349295.1| - 1.6e-61 207.5 0.3 2.5e-61 206.9 0.3 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|389847056|ref|YP_006349295.1| - 4.4e-05 23.1 0.1 0.012 15.1 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family PTS-HPr PF00381.19 gi|389847058|ref|YP_006349297.1| - 3.9e-25 87.9 0.1 4.3e-25 87.8 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site EIIA-man PF03610.16 gi|389847059|ref|YP_006349298.1| - 2.4e-23 82.6 1.7 2.8e-23 82.4 1.7 1.0 1 0 0 1 1 1 1 PTS system fructose IIA component Dak2 PF02734.17 gi|389847060|ref|YP_006349299.1| - 5.5e-44 150.1 0.8 5.5e-44 150.1 0.8 1.5 2 0 0 2 2 2 1 DAK2 domain Dak1 PF02733.17 gi|389847061|ref|YP_006349300.1| - 4.1e-127 423.4 4.4 4.7e-127 423.2 4.4 1.0 1 0 0 1 1 1 1 Dak1 domain tRNA-synt_1 PF00133.22 gi|662859466|ref|YP_006349301.2| - 9.5e-182 605.4 1.2 1.2e-181 605.0 1.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|662859466|ref|YP_006349301.2| - 8.8e-28 97.1 1.6 9e-11 41.1 0.0 4.3 4 1 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|662859466|ref|YP_006349301.2| - 3.6e-26 91.9 0.1 7.8e-26 90.9 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|662859466|ref|YP_006349301.2| - 6.9e-06 25.7 0.0 1.8e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|662859466|ref|YP_006349301.2| - 0.0023 17.4 0.0 0.0094 15.3 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.14 gi|662859466|ref|YP_006349301.2| - 0.0053 16.6 0.3 0.013 15.3 0.3 1.7 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS tRNA-synt_1f PF01921.18 gi|662859466|ref|YP_006349301.2| - 0.0064 15.4 0.0 0.032 13.1 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) UPF0175 PF03683.13 gi|389847064|ref|YP_006349303.1| - 3.9e-07 29.7 0.0 8.4e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) 4HBT PF03061.22 gi|389847066|ref|YP_006349305.1| - 7.2e-16 58.3 0.3 1.1e-15 57.8 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DNase-RNase PF02577.14 gi|389847067|ref|YP_006349306.1| - 1.1e-37 128.6 0.0 1.2e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HTH_20 PF12840.7 gi|389847068|ref|YP_006349307.1| - 1.4e-12 47.5 1.3 3e-12 46.4 1.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389847068|ref|YP_006349307.1| - 6.6e-07 29.1 0.1 1.5e-06 28.0 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389847068|ref|YP_006349307.1| - 8.3e-06 25.3 0.0 1.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389847068|ref|YP_006349307.1| - 1.6e-05 24.7 0.1 4.1e-05 23.4 0.1 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|389847068|ref|YP_006349307.1| - 2.9e-05 23.9 0.0 5.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|389847068|ref|YP_006349307.1| - 0.0012 19.1 0.0 0.0026 18.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DprA_WH PF17782.1 gi|389847068|ref|YP_006349307.1| - 0.0091 16.1 6.5 0.032 14.3 4.8 2.7 2 1 0 2 2 2 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|389847068|ref|YP_006349307.1| - 0.015 15.3 0.1 0.046 13.7 0.1 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|389847068|ref|YP_006349307.1| - 0.017 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|389847068|ref|YP_006349307.1| - 0.029 14.3 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.9 gi|389847068|ref|YP_006349307.1| - 0.037 14.3 0.0 0.055 13.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF742 PF05331.11 gi|389847068|ref|YP_006349307.1| - 0.04 13.7 0.4 0.086 12.7 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF742) AcMNPV_Ac109 PF05054.12 gi|389847068|ref|YP_006349307.1| - 0.066 12.3 0.0 0.089 11.9 0.0 1.1 1 0 0 1 1 1 0 Autographa californica nuclear polyhedrosis virus (AcMNPV) protein HTH_27 PF13463.6 gi|389847068|ref|YP_006349307.1| - 0.072 13.6 0.1 0.16 12.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|389847068|ref|YP_006349307.1| - 0.12 12.3 0.0 0.26 11.3 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2250 PF10007.9 gi|389847068|ref|YP_006349307.1| - 0.21 11.7 0.0 0.33 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Phage_rep_org_N PF09681.10 gi|389847068|ref|YP_006349307.1| - 0.26 11.2 0.0 0.39 10.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF4147 PF13660.6 gi|389847069|ref|YP_006349308.1| - 2.1e-77 259.7 0.4 3.8e-77 258.9 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|389847069|ref|YP_006349308.1| - 8e-28 96.8 3.2 1.5e-27 95.9 3.2 1.5 1 0 0 1 1 1 1 MOFRL family TraB PF01963.17 gi|389847070|ref|YP_006349309.1| - 1.5e-30 107.0 0.0 4.4e-18 66.1 0.0 2.2 2 0 0 2 2 2 2 TraB family Peptidase_M50 PF02163.22 gi|389847071|ref|YP_006349310.1| - 0.055 12.7 12.9 0.19 11.0 0.2 3.2 1 1 0 2 2 2 0 Peptidase family M50 TMEMspv1-c74-12 PF11044.8 gi|389847071|ref|YP_006349310.1| - 0.92 9.5 2.7 2 8.5 2.7 1.5 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein AIRS_C PF02769.22 gi|389847073|ref|YP_006349312.1| - 1.2e-21 77.5 0.1 2e-21 76.7 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|389847073|ref|YP_006349312.1| - 5.4e-15 55.8 2.9 1.1e-14 54.9 2.9 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain p450 PF00067.22 gi|662859468|ref|YP_006349313.2| - 4.1e-76 256.6 0.0 4.8e-76 256.4 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 CdiI_2 PF18593.1 gi|662859468|ref|YP_006349313.2| - 0.075 13.7 0.7 4.6 8.0 0.2 2.8 3 0 0 3 3 3 0 CdiI immunity protein CBS PF00571.28 gi|389847075|ref|YP_006349314.1| - 1.2e-20 73.7 4.5 1.1e-10 41.8 0.1 2.5 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|389847075|ref|YP_006349314.1| - 9.9e-11 41.5 0.1 1.7e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|389847075|ref|YP_006349314.1| - 3.9e-10 39.9 0.7 6.4e-10 39.2 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|389847075|ref|YP_006349314.1| - 1.1e-05 25.3 0.0 2e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|389847075|ref|YP_006349314.1| - 0.00023 21.1 0.0 0.00041 20.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|389847075|ref|YP_006349314.1| - 0.0073 16.2 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|389847075|ref|YP_006349314.1| - 0.083 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_26 PF13443.6 gi|389847075|ref|YP_006349314.1| - 0.094 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Phage_sheath_1 PF04984.14 gi|389847075|ref|YP_006349314.1| - 0.11 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Phage tail sheath protein subtilisin-like domain DUF555 PF04475.12 gi|389847076|ref|YP_006349315.1| - 4.4e-45 152.1 0.1 5.3e-45 151.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.6 gi|389847076|ref|YP_006349315.1| - 0.049 13.4 0.2 0.078 12.7 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Proteasome PF00227.26 gi|389847077|ref|YP_006349316.1| - 1.2e-51 174.9 0.5 1.4e-51 174.7 0.5 1.0 1 0 0 1 1 1 1 Proteasome subunit GCS PF03074.16 gi|389847078|ref|YP_006349317.1| - 0.067 12.6 0.0 0.59 9.4 0.0 2.2 2 1 0 3 3 3 0 Glutamate-cysteine ligase DNA_ligase_A_M PF01068.21 gi|389847079|ref|YP_006349318.1| - 4.4e-48 163.6 0.0 6.3e-48 163.1 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|389847079|ref|YP_006349318.1| - 4.9e-34 118.1 0.0 8.5e-34 117.4 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|389847079|ref|YP_006349318.1| - 1.2e-17 64.3 0.0 6.1e-17 62.1 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|389847079|ref|YP_006349318.1| - 0.0011 19.4 0.0 0.0019 18.5 0.0 1.4 1 0 0 1 1 1 1 RNA ligase Lactamase_B_3 PF13483.6 gi|389847080|ref|YP_006349319.1| - 1.5e-29 103.0 0.0 2.1e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|389847080|ref|YP_006349319.1| - 0.0038 16.7 0.1 0.0076 15.8 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Hydrolase_4 PF12146.8 gi|389847081|ref|YP_006349320.1| - 2.8e-08 33.3 0.0 1.3e-07 31.2 0.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|389847081|ref|YP_006349320.1| - 1e-07 31.9 0.1 1.1e-05 25.2 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389847081|ref|YP_006349320.1| - 5.7e-06 27.1 2.8 7.3e-06 26.7 2.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|389847081|ref|YP_006349320.1| - 0.00058 20.1 0.0 0.00093 19.4 0.0 1.5 2 0 0 2 2 2 1 Thioesterase domain Esterase PF00756.20 gi|389847081|ref|YP_006349320.1| - 0.0015 18.2 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Putative esterase UPF0227 PF05728.12 gi|389847081|ref|YP_006349320.1| - 0.095 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) NAD_binding_8 PF13450.6 gi|389847081|ref|YP_006349320.1| - 0.097 12.9 0.5 0.19 12.0 0.5 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain TP6A_N PF04406.14 gi|389847082|ref|YP_006349321.1| - 4.1e-14 52.3 0.1 7.8e-14 51.4 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|389847082|ref|YP_006349321.1| - 0.0035 17.2 0.0 0.006 16.4 0.0 1.3 1 0 0 1 1 1 1 Circularly permutated YpsA SLOG family Topo-VIb_trans PF09239.11 gi|662859469|ref|YP_006349322.2| - 5.4e-61 205.1 0.0 1.1e-60 204.1 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|662859469|ref|YP_006349322.2| - 2e-37 127.8 0.6 7.2e-37 126.0 0.6 2.0 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|662859469|ref|YP_006349322.2| - 9.8e-14 51.8 0.0 2.3e-13 50.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|662859469|ref|YP_006349322.2| - 3e-12 46.5 0.0 1.4e-11 44.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|662859469|ref|YP_006349322.2| - 0.0025 17.8 2.1 0.02 14.8 0.0 3.3 3 1 0 3 3 3 1 Histidine kinase-like ATPase domain DNA_gyraseB PF00204.25 gi|389847084|ref|YP_006349323.1| - 7.4e-61 204.6 0.3 1.3e-60 203.8 0.3 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|389847084|ref|YP_006349323.1| - 5.4e-29 100.2 0.1 1.1e-28 99.2 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|389847084|ref|YP_006349323.1| - 2.3e-23 82.8 0.1 1.3e-22 80.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|389847084|ref|YP_006349323.1| - 9.8e-19 67.5 0.0 2.5e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|389847084|ref|YP_006349323.1| - 4.3e-05 23.4 0.0 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|389847085|ref|YP_006349324.1| - 2.8e-155 517.4 0.0 3.5e-155 517.1 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|389847085|ref|YP_006349324.1| - 1.1e-80 264.9 7.9 1.7e-14 53.0 0.1 6.3 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller IKI3 PF04762.12 gi|389847085|ref|YP_006349324.1| - 0.029 12.4 0.4 0.13 10.3 0.0 2.0 2 1 0 2 2 2 0 IKI3 family DUF370 PF04025.12 gi|389847085|ref|YP_006349324.1| - 0.08 13.1 0.3 3 8.0 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF370) BacteriocIIc_cy PF12173.8 gi|389847086|ref|YP_006349325.1| - 0.025 14.8 0.1 0.025 14.8 0.1 1.9 2 1 0 2 2 2 0 Bacteriocin class IIc cyclic gassericin A-like DUF4233 PF14017.6 gi|389847086|ref|YP_006349325.1| - 0.065 13.6 6.9 0.42 11.0 6.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) NUDIX PF00293.28 gi|389847087|ref|YP_006349326.1| - 4.8e-15 55.8 0.1 5.7e-15 55.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Arginase PF00491.21 gi|389847088|ref|YP_006349327.1| - 1.1e-74 251.5 5.1 1.2e-74 251.3 5.1 1.0 1 0 0 1 1 1 1 Arginase family GDP_Man_Dehyd PF16363.5 gi|389847089|ref|YP_006349328.1| - 5.5e-47 160.8 0.3 3.5e-46 158.1 0.3 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|389847089|ref|YP_006349328.1| - 8.4e-47 159.7 0.1 1e-46 159.4 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|389847089|ref|YP_006349328.1| - 3.9e-15 55.7 0.0 4.8e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|389847089|ref|YP_006349328.1| - 9.2e-11 41.4 0.1 1.1e-07 31.3 0.0 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|389847089|ref|YP_006349328.1| - 1e-10 41.1 0.1 1.4e-10 40.6 0.1 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|389847089|ref|YP_006349328.1| - 1.5e-08 34.2 0.0 4.3e-06 26.1 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein KR PF08659.10 gi|389847089|ref|YP_006349328.1| - 0.029 14.3 0.1 1 9.2 0.0 2.2 2 0 0 2 2 2 0 KR domain adh_short PF00106.25 gi|389847089|ref|YP_006349328.1| - 0.039 13.4 0.5 0.49 9.8 0.1 2.5 1 1 0 2 2 2 0 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|389847089|ref|YP_006349328.1| - 0.047 13.6 0.0 0.099 12.5 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding HrcA_DNA-bdg PF03444.15 gi|389847090|ref|YP_006349329.1| - 1.9e-38 130.0 0.1 2.6e-38 129.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|389847090|ref|YP_006349329.1| - 2.4e-09 37.4 0.0 3.4e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|389847090|ref|YP_006349329.1| - 1.2e-07 31.5 0.0 1.9e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|389847090|ref|YP_006349329.1| - 0.0048 16.8 0.0 0.0067 16.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389847090|ref|YP_006349329.1| - 0.062 13.2 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Pyr_redox_2 PF07992.14 gi|389847091|ref|YP_006349330.1| - 1.4e-40 139.4 0.2 1.6e-40 139.2 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389847091|ref|YP_006349330.1| - 8e-09 35.9 0.2 3.6e-07 30.6 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|389847091|ref|YP_006349330.1| - 0.0072 16.3 0.6 2.6 8.0 0.0 2.8 3 0 0 3 3 3 2 FAD-NAD(P)-binding NUDIX PF00293.28 gi|389847091|ref|YP_006349330.1| - 0.021 14.9 3.4 2.2 8.3 0.1 2.3 2 0 0 2 2 2 0 NUDIX domain AlaDh_PNT_C PF01262.21 gi|389847091|ref|YP_006349330.1| - 0.054 12.8 0.6 3.7 6.8 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|389847091|ref|YP_006349330.1| - 0.096 11.8 0.1 4.5 6.3 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|389847091|ref|YP_006349330.1| - 0.099 12.9 0.3 12 6.3 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|389847091|ref|YP_006349330.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PNP_UDP_1 PF01048.20 gi|389847092|ref|YP_006349331.1| - 1.8e-47 161.6 2.3 2.1e-47 161.4 2.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily dCMP_cyt_deam_1 PF00383.23 gi|389847093|ref|YP_006349332.1| - 1.3e-16 60.3 0.1 1.7e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|389847093|ref|YP_006349332.1| - 6.9e-12 45.7 0.2 1.1e-11 45.0 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|389847093|ref|YP_006349332.1| - 0.18 11.9 0.1 0.26 11.4 0.1 1.2 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 FixS PF03597.15 gi|662859470|ref|YP_006349333.2| - 4.9 6.9 10.2 0.43 10.3 2.1 2.2 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Acetyltransf_1 PF00583.25 gi|389847096|ref|YP_006349335.1| - 9.3e-07 29.1 0.0 1.3e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|389847096|ref|YP_006349335.1| - 0.00046 20.3 0.0 0.00068 19.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.7 gi|389847096|ref|YP_006349335.1| - 0.00048 20.1 0.0 0.001 19.0 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389847096|ref|YP_006349335.1| - 0.00057 20.0 0.0 0.00095 19.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389847096|ref|YP_006349335.1| - 0.0013 19.1 0.0 0.0018 18.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AMP-binding PF00501.28 gi|389847097|ref|YP_006349336.1| - 6.3e-70 235.9 0.0 8.4e-70 235.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389847097|ref|YP_006349336.1| - 1.7e-22 80.2 0.3 4.4e-22 78.8 0.3 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|389847097|ref|YP_006349336.1| - 1.2e-10 41.1 0.0 1.2e-10 41.1 0.0 3.3 3 0 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus SDF PF00375.18 gi|389847098|ref|YP_006349337.1| - 1.1e-116 390.2 29.0 1.2e-116 390.0 29.0 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family AMP-binding PF00501.28 gi|389847099|ref|YP_006349338.1| - 5.3e-12 45.1 0.0 8.4e-07 27.9 0.0 2.5 1 1 1 2 2 2 2 AMP-binding enzyme Cupin_2 PF07883.11 gi|389847100|ref|YP_006349339.1| - 9.3e-12 44.5 0.9 1.5e-11 43.9 0.9 1.4 1 1 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|389847100|ref|YP_006349339.1| - 2.9e-06 26.9 0.5 9.9e-06 25.2 0.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|389847100|ref|YP_006349339.1| - 3.1e-06 27.0 0.1 3.6e-06 26.8 0.1 1.0 1 0 0 1 1 1 1 AraC-binding-like domain Ectoine_synth PF06339.12 gi|389847100|ref|YP_006349339.1| - 0.00046 20.4 0.0 0.00048 20.3 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase AraC_binding PF02311.19 gi|389847100|ref|YP_006349339.1| - 0.0057 16.6 0.0 0.0074 16.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain DMSP_lyase PF16867.5 gi|389847100|ref|YP_006349339.1| - 0.012 15.2 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Pirin_C_2 PF17954.1 gi|389847100|ref|YP_006349339.1| - 0.044 14.0 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain Cupin_6 PF12852.7 gi|389847100|ref|YP_006349339.1| - 0.071 12.8 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Multi_ubiq PF14452.6 gi|389847100|ref|YP_006349339.1| - 0.078 13.2 0.1 0.21 11.9 0.0 1.7 2 0 0 2 2 2 0 Multiubiquitin Pirin_C PF05726.13 gi|389847100|ref|YP_006349339.1| - 0.12 12.7 0.0 0.15 12.4 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain DnaJ_C PF01556.18 gi|389847101|ref|YP_006349340.1| - 2.5e-42 144.5 0.0 3.6e-42 144.0 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|389847101|ref|YP_006349340.1| - 5e-25 87.4 5.2 9.6e-25 86.5 5.2 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|389847101|ref|YP_006349340.1| - 1.8e-12 47.4 19.0 4e-12 46.3 19.0 1.6 1 0 0 1 1 1 1 DnaJ central domain Malate_DH PF12434.8 gi|389847101|ref|YP_006349340.1| - 0.13 12.3 0.8 15 5.8 0.0 2.7 2 0 0 2 2 2 0 Malate dehydrogenase enzyme DZR PF12773.7 gi|389847101|ref|YP_006349340.1| - 0.31 11.1 9.7 0.71 10.0 9.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|389847101|ref|YP_006349340.1| - 0.97 9.5 18.7 3.5 7.7 5.0 3.3 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein API5 PF05918.11 gi|389847101|ref|YP_006349340.1| - 2.2 7.0 4.8 3.9 6.2 4.8 1.3 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) Bindin PF02084.15 gi|389847101|ref|YP_006349340.1| - 2.3 8.4 12.0 0.069 13.4 4.4 2.3 3 0 0 3 3 3 0 Bindin HypA PF01155.19 gi|389847101|ref|YP_006349340.1| - 2.6 8.1 12.2 2.5 8.1 2.7 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_10 PF16685.5 gi|389847101|ref|YP_006349340.1| - 3 8.0 5.1 0.98 9.6 0.5 2.1 1 1 1 2 2 2 0 zinc RING finger of MSL2 DUF5351 PF17302.2 gi|389847101|ref|YP_006349340.1| - 7.8 6.8 25.9 3.8 7.8 1.1 4.4 4 0 0 4 4 4 0 Family of unknown function (DUF5351) HSP70 PF00012.20 gi|389847103|ref|YP_006349342.1| - 7.2e-242 803.9 14.3 1.3e-211 704.0 10.9 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|389847103|ref|YP_006349342.1| - 3.3e-20 72.2 0.3 3.3e-20 72.2 0.3 2.1 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|389847103|ref|YP_006349342.1| - 0.0058 15.9 0.0 0.013 14.7 0.0 1.5 1 0 0 1 1 1 1 StbA protein FIVAR PF07554.13 gi|389847103|ref|YP_006349342.1| - 0.02 15.6 2.1 0.093 13.5 2.1 2.3 1 0 0 1 1 1 0 FIVAR domain FGGY_C PF02782.16 gi|389847103|ref|YP_006349342.1| - 0.027 14.2 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain PapD_N PF00345.20 gi|389847103|ref|YP_006349342.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain GARP PF16731.5 gi|389847103|ref|YP_006349342.1| - 0.41 10.3 12.7 4.5 6.9 11.4 2.4 2 0 0 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma Fib_alpha PF08702.10 gi|389847103|ref|YP_006349342.1| - 0.86 9.8 5.8 1.9 8.7 5.8 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Abhydrolase_6 PF12697.7 gi|389847104|ref|YP_006349343.1| - 3e-07 31.3 3.7 4.2e-07 30.8 3.7 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family GrpE PF01025.19 gi|389847105|ref|YP_006349344.1| - 5.4e-39 133.5 14.5 1.7e-38 131.9 14.5 1.9 1 1 0 1 1 1 1 GrpE TMF_DNA_bd PF12329.8 gi|389847105|ref|YP_006349344.1| - 0.0021 18.0 5.2 0.006 16.5 5.2 1.8 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding ADIP PF11559.8 gi|389847105|ref|YP_006349344.1| - 0.0074 16.4 8.1 0.014 15.4 8.1 1.5 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Golgin_A5 PF09787.9 gi|389847105|ref|YP_006349344.1| - 0.017 14.6 14.2 0.023 14.2 14.2 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 CHASE6_C PF17150.4 gi|389847105|ref|YP_006349344.1| - 0.019 15.6 2.1 1.4 9.7 2.1 2.5 1 1 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain UPF0242 PF06785.11 gi|389847105|ref|YP_006349344.1| - 0.024 14.8 7.6 0.03 14.4 7.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ATG16 PF08614.11 gi|389847105|ref|YP_006349344.1| - 0.033 14.4 17.7 0.053 13.7 17.7 1.3 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DCB PF16213.5 gi|389847105|ref|YP_006349344.1| - 0.035 13.8 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Dimerisation and cyclophilin-binding domain of Mon2 Occludin_ELL PF07303.13 gi|389847105|ref|YP_006349344.1| - 0.041 14.6 3.4 0.078 13.7 3.0 1.7 1 1 0 1 1 1 0 Occludin homology domain TMPIT PF07851.13 gi|389847105|ref|YP_006349344.1| - 0.044 13.0 2.3 0.055 12.7 2.3 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF787 PF05619.11 gi|389847105|ref|YP_006349344.1| - 0.052 12.7 1.3 0.069 12.3 1.3 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF787) Fib_alpha PF08702.10 gi|389847105|ref|YP_006349344.1| - 0.063 13.5 4.1 0.094 12.9 3.4 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4633 PF15464.6 gi|389847105|ref|YP_006349344.1| - 0.081 13.1 1.2 0.18 12.0 1.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4633) Tho2 PF11262.8 gi|389847105|ref|YP_006349344.1| - 0.083 12.1 2.3 0.11 11.6 2.3 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Spectrin PF00435.21 gi|389847105|ref|YP_006349344.1| - 0.085 13.3 6.5 0.24 11.9 6.5 1.8 1 0 0 1 1 1 0 Spectrin repeat Ax_dynein_light PF10211.9 gi|389847105|ref|YP_006349344.1| - 0.2 11.6 8.1 0.54 10.2 8.1 1.9 1 1 0 1 1 1 0 Axonemal dynein light chain Sugarporin_N PF11471.8 gi|389847105|ref|YP_006349344.1| - 0.2 11.6 0.2 0.2 11.6 0.2 3.3 2 1 2 4 4 3 0 Maltoporin periplasmic N-terminal extension YabA PF06156.13 gi|389847105|ref|YP_006349344.1| - 0.21 12.2 3.7 1.6 9.4 4.2 2.0 1 1 1 2 2 2 0 Initiation control protein YabA CLZ PF16526.5 gi|389847105|ref|YP_006349344.1| - 0.27 11.6 11.0 0.88 10.0 6.2 2.8 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels OmpH PF03938.14 gi|389847105|ref|YP_006349344.1| - 0.27 11.6 13.9 0.28 11.5 12.9 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF812 PF05667.11 gi|389847105|ref|YP_006349344.1| - 0.28 10.0 15.7 0.34 9.7 15.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) XhlA PF10779.9 gi|389847105|ref|YP_006349344.1| - 0.31 11.3 4.5 0.17 12.1 1.2 2.3 1 1 1 2 2 2 0 Haemolysin XhlA TSC22 PF01166.18 gi|389847105|ref|YP_006349344.1| - 0.35 11.2 2.9 2.2 8.7 0.2 2.4 1 1 1 2 2 2 0 TSC-22/dip/bun family HAUS-augmin3 PF14932.6 gi|389847105|ref|YP_006349344.1| - 0.39 10.2 9.3 0.51 9.9 9.3 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Prefoldin_2 PF01920.20 gi|389847105|ref|YP_006349344.1| - 0.44 10.5 12.4 0.21 11.6 0.9 2.8 2 1 1 3 3 3 0 Prefoldin subunit Atg14 PF10186.9 gi|389847105|ref|YP_006349344.1| - 0.61 9.1 5.6 0.75 8.8 5.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|389847105|ref|YP_006349344.1| - 0.64 8.9 11.0 0.78 8.6 11.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein ABC_tran_CTD PF16326.5 gi|389847105|ref|YP_006349344.1| - 0.68 10.2 10.8 2 8.7 9.1 2.7 1 1 1 2 2 2 0 ABC transporter C-terminal domain Syntaxin-6_N PF09177.11 gi|389847105|ref|YP_006349344.1| - 1 9.9 10.8 4.4 7.9 8.1 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DivIC PF04977.15 gi|389847105|ref|YP_006349344.1| - 1 9.1 14.2 0.26 11.1 3.4 2.6 1 1 1 2 2 2 0 Septum formation initiator DUF4472 PF14739.6 gi|389847105|ref|YP_006349344.1| - 1.4 9.7 14.2 0.32 11.7 6.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) SlyX PF04102.12 gi|389847105|ref|YP_006349344.1| - 2.1 9.0 6.5 7.9 7.2 6.5 2.1 1 0 0 1 1 1 0 SlyX IFT57 PF10498.9 gi|389847105|ref|YP_006349344.1| - 4.2 6.2 15.4 5.8 5.8 15.4 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF334 PF03904.13 gi|389847105|ref|YP_006349344.1| - 5.5 6.5 7.3 45 3.5 7.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF334) PAC2 PF09754.9 gi|389847106|ref|YP_006349345.1| - 8e-37 127.3 0.0 9.4e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Methyltr_RsmB-F PF01189.17 gi|389847107|ref|YP_006349346.1| - 4.8e-55 186.3 0.0 6e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|389847107|ref|YP_006349346.1| - 1.3e-06 28.8 0.0 2.9e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|389847107|ref|YP_006349346.1| - 6.5e-06 26.0 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|389847107|ref|YP_006349346.1| - 0.0039 17.3 0.0 0.0057 16.8 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltranf_PUA PF13636.6 gi|389847108|ref|YP_006349347.1| - 5.9e-07 29.4 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF HTH_33 PF13592.6 gi|389847108|ref|YP_006349347.1| - 0.04 13.6 0.1 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix DUF790 PF05626.11 gi|662859471|ref|YP_006349348.2| - 1.5e-137 458.4 0.0 1.8e-137 458.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Glyco_hydro_2 PF00703.21 gi|389847110|ref|YP_006349349.1| - 0.033 14.9 0.6 0.042 14.5 0.6 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 2 DUF4307 PF14155.6 gi|389847110|ref|YP_006349349.1| - 0.15 11.9 2.9 0.24 11.2 2.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) ResIII PF04851.15 gi|662859472|ref|YP_006349350.2| - 1.6e-22 80.3 0.0 1.2e-21 77.5 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|662859472|ref|YP_006349350.2| - 4.3e-20 72.0 0.0 5.8e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|662859472|ref|YP_006349350.2| - 6.6e-19 67.5 0.8 2.4e-18 65.8 0.8 2.1 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|662859472|ref|YP_006349350.2| - 6.5e-17 61.9 0.0 4.1e-16 59.3 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|662859472|ref|YP_006349350.2| - 2.2e-07 30.8 0.0 1.5e-06 28.1 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|662859472|ref|YP_006349350.2| - 0.078 13.1 0.0 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Helicase C-terminal domain AAA_22 PF13401.6 gi|662859472|ref|YP_006349350.2| - 0.16 12.2 0.0 1.1 9.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain Aminotran_1_2 PF00155.21 gi|389847113|ref|YP_006349352.1| - 2.7e-69 234.1 0.0 3e-69 233.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|389847113|ref|YP_006349352.1| - 2.5e-15 56.7 0.1 4e-15 56.0 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|389847113|ref|YP_006349352.1| - 1.4e-08 34.2 0.0 2e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|389847113|ref|YP_006349352.1| - 3.8e-08 32.3 0.0 6.3e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|389847113|ref|YP_006349352.1| - 4.4e-08 32.8 0.0 8.7e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|389847113|ref|YP_006349352.1| - 0.026 13.2 0.1 0.045 12.4 0.1 1.3 1 0 0 1 1 1 0 Aminotransferase class-III TAD2 PF18521.1 gi|389847113|ref|YP_006349352.1| - 0.37 10.8 0.1 0.37 10.8 0.1 2.7 3 0 0 3 3 3 0 Transactivation domain 2 Na_H_antiporter PF03553.14 gi|389847114|ref|YP_006349353.1| - 2.6e-61 207.5 28.4 1.6e-60 204.9 9.9 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family CitMHS PF03600.16 gi|389847114|ref|YP_006349353.1| - 4.4e-05 22.8 40.8 0.0012 18.1 20.0 2.4 1 1 1 2 2 2 2 Citrate transporter SseC PF04888.12 gi|389847114|ref|YP_006349353.1| - 0.051 13.2 0.1 0.051 13.2 0.1 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF4516 PF14990.6 gi|389847114|ref|YP_006349353.1| - 0.49 10.2 4.2 1.7 8.4 0.1 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4516) TrkA_C PF02080.21 gi|389847115|ref|YP_006349354.1| - 8.9e-13 47.9 2.4 2.5e-12 46.4 2.4 1.8 1 0 0 1 1 1 1 TrkA-C domain HTH_AsnC-type PF13404.6 gi|389847115|ref|YP_006349354.1| - 1.2e-10 41.0 0.4 3e-10 39.8 0.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389847115|ref|YP_006349354.1| - 6.7e-09 35.2 0.1 1.2e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389847115|ref|YP_006349354.1| - 5.2e-05 23.1 0.0 0.00016 21.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|389847115|ref|YP_006349354.1| - 6.5e-05 22.9 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|389847115|ref|YP_006349354.1| - 0.012 15.7 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|389847115|ref|YP_006349354.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_23 PF13384.6 gi|389847115|ref|YP_006349354.1| - 0.027 14.3 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_CodY PF08222.11 gi|389847115|ref|YP_006349354.1| - 0.032 13.8 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain RPA_C PF08784.11 gi|389847115|ref|YP_006349354.1| - 0.032 14.9 0.0 1.3 9.7 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_38 PF13936.6 gi|389847115|ref|YP_006349354.1| - 0.042 13.6 1.4 0.055 13.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|389847115|ref|YP_006349354.1| - 0.058 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|389847115|ref|YP_006349354.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|389847115|ref|YP_006349354.1| - 0.13 12.2 0.0 0.35 10.8 0.0 1.7 2 0 0 2 2 1 0 MarR family DUF5367 PF17329.2 gi|389847116|ref|YP_006349355.1| - 3.6e-24 84.7 1.2 5.9e-24 84.0 1.2 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5367) DUF2627 PF11118.8 gi|389847116|ref|YP_006349355.1| - 2.1 9.0 8.7 0.47 11.1 0.9 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2627) PGA_cap PF09587.10 gi|389847117|ref|YP_006349356.1| - 1.3e-58 198.5 0.0 1.6e-58 198.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Peripla_BP_2 PF01497.18 gi|389847119|ref|YP_006349358.1| - 1.5e-16 60.7 0.0 2.7e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389847119|ref|YP_006349358.1| - 0.0024 17.7 0.1 0.0046 16.8 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SnoaL PF07366.12 gi|389847120|ref|YP_006349359.1| - 9.8e-33 112.6 0.2 1.1e-32 112.5 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|389847120|ref|YP_006349359.1| - 7.9e-21 74.6 0.5 9.3e-21 74.4 0.5 1.1 1 0 0 1 1 1 1 SnoaL-like domain MMR_HSR1_C PF08438.10 gi|389847121|ref|YP_006349360.1| - 9.6e-31 106.7 0.0 1.5e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|389847121|ref|YP_006349360.1| - 3.4e-20 72.2 0.0 1.2e-18 67.3 0.0 2.6 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|389847121|ref|YP_006349360.1| - 1.1e-10 41.4 0.0 2.5e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|389847121|ref|YP_006349360.1| - 9.5e-09 35.0 0.0 1.5e-06 27.8 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|389847121|ref|YP_006349360.1| - 0.014 15.0 0.0 0.17 11.4 0.0 2.6 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain UPF0181 PF03701.14 gi|389847121|ref|YP_006349360.1| - 0.063 12.9 0.1 0.18 11.5 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) DUF4349 PF14257.6 gi|389847122|ref|YP_006349361.1| - 1.8e-64 217.1 4.0 2.5e-64 216.6 4.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) CENP-F_leu_zip PF10473.9 gi|389847122|ref|YP_006349361.1| - 0.00022 21.3 4.6 0.00022 21.3 4.6 1.5 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Osmo_CC PF08946.10 gi|389847122|ref|YP_006349361.1| - 0.00098 19.3 7.2 0.07 13.4 1.9 2.4 2 0 0 2 2 2 2 Osmosensory transporter coiled coil DivIC PF04977.15 gi|389847122|ref|YP_006349361.1| - 0.0087 15.8 9.4 0.4 10.5 1.7 3.2 2 1 1 3 3 3 2 Septum formation initiator MAD PF05557.13 gi|389847122|ref|YP_006349361.1| - 0.013 13.9 3.8 0.018 13.5 3.8 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein AAA_23 PF13476.6 gi|389847122|ref|YP_006349361.1| - 0.016 15.7 1.4 0.027 15.0 1.4 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran_CTD PF16326.5 gi|389847122|ref|YP_006349361.1| - 0.02 15.1 4.0 0.21 11.8 0.6 2.6 2 1 1 3 3 2 0 ABC transporter C-terminal domain PI3K_P85_iSH2 PF16454.5 gi|389847122|ref|YP_006349361.1| - 0.023 14.3 1.8 0.032 13.8 0.8 1.6 2 0 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain FPP PF05911.11 gi|389847122|ref|YP_006349361.1| - 0.025 12.8 0.9 0.029 12.6 0.9 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Spc7 PF08317.11 gi|389847122|ref|YP_006349361.1| - 0.032 13.1 3.9 0.053 12.4 3.9 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|389847122|ref|YP_006349361.1| - 0.056 13.5 2.7 0.11 12.5 2.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 gi|389847122|ref|YP_006349361.1| - 0.057 13.8 4.3 0.11 13.0 4.3 1.4 1 0 0 1 1 1 0 Snapin/Pallidin V_ATPase_I PF01496.19 gi|389847122|ref|YP_006349361.1| - 0.08 10.8 0.1 0.096 10.6 0.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FlxA PF14282.6 gi|389847122|ref|YP_006349361.1| - 0.084 12.9 1.3 0.17 11.9 1.3 1.5 1 0 0 1 1 1 0 FlxA-like protein Spc24 PF08286.11 gi|389847122|ref|YP_006349361.1| - 0.092 13.0 7.4 0.75 10.1 0.7 2.6 2 1 1 3 3 2 0 Spc24 subunit of Ndc80 Dynactin_p22 PF07426.11 gi|389847122|ref|YP_006349361.1| - 0.095 12.6 1.9 0.39 10.6 1.9 1.8 1 1 0 1 1 1 0 Dynactin subunit p22 PilJ PF13675.6 gi|389847122|ref|YP_006349361.1| - 0.099 12.7 3.3 0.13 12.3 1.9 1.8 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Prefoldin_2 PF01920.20 gi|389847122|ref|YP_006349361.1| - 0.12 12.4 8.1 1.2 9.1 1.6 2.6 2 1 1 3 3 3 0 Prefoldin subunit GAS PF13851.6 gi|389847122|ref|YP_006349361.1| - 0.13 11.6 4.7 0.21 10.9 4.7 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|389847122|ref|YP_006349361.1| - 0.2 11.7 6.7 0.23 11.4 5.2 1.9 2 1 0 2 2 1 0 Laminin Domain II DUF4223 PF13978.6 gi|389847122|ref|YP_006349361.1| - 0.2 11.6 0.1 0.4 10.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) M PF02370.16 gi|389847122|ref|YP_006349361.1| - 0.25 12.0 2.2 12 6.8 0.0 2.9 2 1 0 2 2 2 0 M protein repeat Baculo_PEP_C PF04513.12 gi|389847122|ref|YP_006349361.1| - 0.3 11.1 3.2 1.2 9.2 3.0 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DASH_Spc19 PF08287.11 gi|389847122|ref|YP_006349361.1| - 0.32 10.9 7.9 0.54 10.1 1.0 2.4 1 1 1 2 2 2 0 Spc19 Cnn_1N PF07989.11 gi|389847122|ref|YP_006349361.1| - 0.36 11.0 7.2 1.1 9.5 0.8 2.3 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 NPV_P10 PF05531.12 gi|389847122|ref|YP_006349361.1| - 0.37 11.3 5.7 3.3 8.2 1.5 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.6 gi|389847122|ref|YP_006349361.1| - 0.45 11.0 11.4 2 8.9 2.4 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) COX7a PF02238.15 gi|389847122|ref|YP_006349361.1| - 0.46 10.9 3.3 6.6 7.2 0.0 2.5 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII DUF2730 PF10805.8 gi|389847122|ref|YP_006349361.1| - 0.79 9.8 3.5 7.6 6.7 3.5 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) MerR-DNA-bind PF09278.11 gi|389847122|ref|YP_006349361.1| - 0.82 10.3 10.3 1.4 9.5 1.7 2.5 1 1 1 2 2 2 0 MerR, DNA binding TPR_MLP1_2 PF07926.12 gi|389847122|ref|YP_006349361.1| - 1.2 9.2 8.9 4.2 7.4 7.7 2.2 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|389847122|ref|YP_006349361.1| - 1.7 9.0 5.7 2.7 8.4 4.8 1.7 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT20 PF14931.6 gi|389847122|ref|YP_006349361.1| - 2.3 8.4 7.9 11 6.2 1.1 2.6 2 1 1 3 3 3 0 Intraflagellar transport complex B, subunit 20 APG6_N PF17675.1 gi|389847122|ref|YP_006349361.1| - 2.3 8.8 11.5 1.7 9.2 1.7 2.4 2 1 1 3 3 2 0 Apg6 coiled-coil region FlaC_arch PF05377.11 gi|389847122|ref|YP_006349361.1| - 2.6 8.5 4.3 9.4 6.7 0.5 2.7 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|389847122|ref|YP_006349361.1| - 2.6 8.7 6.6 4.9 7.8 1.7 2.4 1 1 1 2 2 2 0 SlyX DUF1192 PF06698.11 gi|389847122|ref|YP_006349361.1| - 5.5 7.1 7.0 1.2 9.3 0.6 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) Bactofilin PF04519.13 gi|389847123|ref|YP_006349362.1| - 6.5e-13 48.8 10.1 2.3e-09 37.4 0.5 3.6 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|389847123|ref|YP_006349362.1| - 0.012 15.3 15.4 1.5 8.7 0.1 6.5 6 1 1 7 7 7 0 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389847123|ref|YP_006349362.1| - 5.1 6.9 8.8 11 5.9 0.1 4.1 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF4964 PF16334.5 gi|389847125|ref|YP_006349364.1| - 0.043 13.4 0.0 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4964) DUF3179 PF11376.8 gi|662859473|ref|YP_006349365.2| - 3.4e-91 305.6 0.0 3.9e-91 305.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) TAT_signal PF10518.9 gi|662859473|ref|YP_006349365.2| - 0.011 15.5 1.1 0.011 15.5 1.1 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_2 PF00535.26 gi|389847127|ref|YP_006349366.1| - 3e-19 69.4 0.0 4.2e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389847127|ref|YP_006349366.1| - 2.5e-06 27.6 0.0 3e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 RNase_H_2 PF13482.6 gi|389847129|ref|YP_006349368.1| - 7.8e-38 130.1 0.0 1.1e-37 129.6 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|389847129|ref|YP_006349368.1| - 0.00017 21.4 0.0 0.00031 20.5 0.0 1.5 1 1 0 1 1 1 1 3'-5' exonuclease SRAP PF02586.14 gi|662859474|ref|YP_006349369.2| - 2.5e-68 229.9 0.0 2.8e-68 229.7 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) Lipase_GDSL_2 PF13472.6 gi|389847131|ref|YP_006349370.1| - 1.6e-08 35.1 1.1 6.2e-07 30.0 0.5 3.4 2 1 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|389847131|ref|YP_006349370.1| - 0.00015 21.8 0.0 0.00063 19.8 0.0 2.1 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase TetR_C_11 PF16859.5 gi|389847131|ref|YP_006349370.1| - 0.091 13.1 0.5 0.52 10.6 0.1 2.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain RHH_1 PF01402.21 gi|389847135|ref|YP_006349374.1| - 0.13 12.2 0.5 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.22 gi|389847136|ref|YP_006349375.1| - 5.2e-15 55.7 0.0 8.9e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|389847136|ref|YP_006349375.1| - 8.1e-08 32.6 0.1 1.7e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|389847136|ref|YP_006349375.1| - 1.6e-07 31.5 0.1 3.4e-07 30.5 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|389847136|ref|YP_006349375.1| - 0.015 15.7 0.0 0.03 14.7 0.0 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_integr_3 PF16795.5 gi|389847136|ref|YP_006349375.1| - 0.055 13.4 0.0 0.36 10.7 0.0 2.0 2 0 0 2 2 2 0 Archaeal phage integrase AsmA_2 PF13502.6 gi|389847138|ref|YP_006349377.1| - 0.12 11.9 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 AsmA-like C-terminal region Ferritin PF00210.24 gi|662859475|ref|YP_006349378.2| - 2.4e-31 108.6 6.3 2.9e-31 108.3 6.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain Osmo_CC PF08946.10 gi|662859475|ref|YP_006349378.2| - 0.011 16.0 0.3 0.011 16.0 0.3 2.7 3 0 0 3 3 3 0 Osmosensory transporter coiled coil DUF1451 PF07295.11 gi|662859475|ref|YP_006349378.2| - 0.24 11.4 5.8 0.31 11.1 1.7 2.2 1 1 1 2 2 2 0 Zinc-ribbon containing domain Gln-synt_C PF00120.24 gi|389847140|ref|YP_006349379.1| - 1.6e-90 303.6 0.0 1.9e-90 303.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|389847140|ref|YP_006349379.1| - 4.6e-16 58.6 0.0 7.6e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Aconitase PF00330.20 gi|389847140|ref|YP_006349379.1| - 0.21 10.5 0.0 0.4 9.6 0.0 1.3 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Peripla_BP_2 PF01497.18 gi|389847141|ref|YP_006349380.1| - 9.9e-14 51.5 0.0 1.6e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein DHR-2 PF06920.13 gi|389847141|ref|YP_006349380.1| - 0.29 9.7 0.0 0.43 9.2 0.0 1.1 1 0 0 1 1 1 0 Dock homology region 2 Gln-synt_C PF00120.24 gi|389847142|ref|YP_006349381.1| - 6.6e-100 334.5 0.0 7.9e-100 334.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|389847142|ref|YP_006349381.1| - 1.2e-13 50.9 0.0 1.9e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain EF-hand_8 PF13833.6 gi|389847142|ref|YP_006349381.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair Peptidase_C58 PF03543.14 gi|389847142|ref|YP_006349381.1| - 0.22 11.2 0.1 0.35 10.6 0.1 1.2 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen MatE PF01554.18 gi|389847143|ref|YP_006349382.1| - 5.5e-55 185.4 29.0 8.1e-31 106.9 8.9 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|389847143|ref|YP_006349382.1| - 3.9e-06 27.0 2.5 3.9e-06 27.0 2.5 4.4 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Kinocilin PF15033.6 gi|389847143|ref|YP_006349382.1| - 2.3 7.9 5.3 0.5 10.0 0.2 2.4 2 0 0 2 2 2 0 Kinocilin protein Polysacc_deac_1 PF01522.21 gi|389847144|ref|YP_006349383.1| - 8.1e-21 74.2 0.0 1.2e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|389847144|ref|YP_006349383.1| - 0.013 15.2 0.1 0.025 14.2 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2334) RraA-like PF03737.15 gi|389847145|ref|YP_006349384.1| - 5.3e-34 117.6 1.3 6.4e-34 117.3 1.3 1.1 1 0 0 1 1 1 1 Aldolase/RraA Peripla_BP_2 PF01497.18 gi|389847146|ref|YP_006349385.1| - 1.9e-19 70.2 0.4 2.9e-19 69.6 0.1 1.5 2 0 0 2 2 2 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389847146|ref|YP_006349385.1| - 0.009 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GvpO PF05800.11 gi|389847147|ref|YP_006349386.1| - 5.6e-32 109.6 0.3 7.6e-32 109.1 0.3 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO AAA_5 PF07728.14 gi|389847148|ref|YP_006349387.1| - 8.5e-19 67.9 0.0 2e-17 63.5 0.0 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|389847148|ref|YP_006349387.1| - 1.1e-05 25.9 0.1 6.7e-05 23.3 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|389847148|ref|YP_006349387.1| - 1.7e-05 25.2 0.0 0.00011 22.7 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|389847148|ref|YP_006349387.1| - 6.2e-05 22.9 0.0 0.072 12.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|389847148|ref|YP_006349387.1| - 0.00011 21.7 0.0 0.00027 20.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|389847148|ref|YP_006349387.1| - 0.00051 19.8 0.0 0.0014 18.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|389847148|ref|YP_006349387.1| - 0.00063 19.4 0.1 0.0042 16.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|389847148|ref|YP_006349387.1| - 0.0023 17.9 0.0 0.027 14.4 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|389847148|ref|YP_006349387.1| - 0.0043 17.6 0.0 0.012 16.1 0.0 2.0 1 1 1 2 2 2 1 ABC transporter AAA_33 PF13671.6 gi|389847148|ref|YP_006349387.1| - 0.0052 17.0 0.2 0.018 15.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|389847148|ref|YP_006349387.1| - 0.0057 16.4 0.0 0.099 12.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain TIP49 PF06068.13 gi|389847148|ref|YP_006349387.1| - 0.011 15.0 0.0 0.023 13.9 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain IPT PF01745.16 gi|389847148|ref|YP_006349387.1| - 0.012 15.0 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase AAA_22 PF13401.6 gi|389847148|ref|YP_006349387.1| - 0.013 15.8 0.0 0.11 12.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|389847148|ref|YP_006349387.1| - 0.016 15.1 0.0 0.062 13.2 0.0 2.0 3 0 0 3 3 2 0 NACHT domain PhoH PF02562.16 gi|389847148|ref|YP_006349387.1| - 0.038 13.5 0.0 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|389847148|ref|YP_006349387.1| - 0.044 13.9 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|389847148|ref|YP_006349387.1| - 0.045 14.3 1.4 0.2 12.2 0.0 2.5 3 0 0 3 3 3 0 AAA domain RuvB_N PF05496.12 gi|389847148|ref|YP_006349387.1| - 0.046 13.5 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Zeta_toxin PF06414.12 gi|389847148|ref|YP_006349387.1| - 0.076 12.3 0.6 0.28 10.4 0.0 2.4 3 0 0 3 3 3 0 Zeta toxin AAA_14 PF13173.6 gi|389847148|ref|YP_006349387.1| - 0.08 13.0 0.0 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Angiomotin_C PF12240.8 gi|389847148|ref|YP_006349387.1| - 2.5 7.6 8.2 0.86 9.1 5.3 1.7 2 0 0 2 2 2 0 Angiomotin C terminal Halo_GVPC PF05465.13 gi|389847149|ref|YP_006349388.1| - 1.5e-51 172.1 60.9 7.6e-12 45.2 7.8 8.0 6 1 1 7 7 7 7 Halobacterial gas vesicle protein C (GVPC) repeat ROS_MUCR PF05443.11 gi|389847149|ref|YP_006349388.1| - 1e-06 28.8 0.2 3.9e-06 26.9 0.2 2.2 1 1 0 1 1 1 1 ROS/MUCR transcriptional regulator protein LPP PF04728.13 gi|389847149|ref|YP_006349388.1| - 6.8e-05 23.2 0.8 1.2 9.6 0.0 4.7 4 0 0 4 4 4 1 Lipoprotein leucine-zipper Bacillus_HBL PF05791.11 gi|389847149|ref|YP_006349388.1| - 0.0004 20.2 1.1 0.062 13.1 0.2 3.1 1 1 2 3 3 3 1 Bacillus haemolytic enterotoxin (HBL) HBM PF16591.5 gi|389847149|ref|YP_006349388.1| - 0.00078 18.9 9.0 0.034 13.6 1.2 2.5 1 1 1 2 2 2 2 Helical bimodular sensor domain DUF2508 PF10704.9 gi|389847149|ref|YP_006349388.1| - 0.0017 18.5 0.9 7.7 6.8 0.1 4.1 4 1 1 5 5 4 1 Protein of unknown function (DUF2508) CorA PF01544.18 gi|389847149|ref|YP_006349388.1| - 0.0017 17.7 3.2 2.1 7.6 0.0 2.7 1 1 0 2 2 2 2 CorA-like Mg2+ transporter protein HsbA PF12296.8 gi|389847149|ref|YP_006349388.1| - 0.0091 16.4 0.9 0.092 13.2 0.3 2.7 2 1 0 2 2 2 1 Hydrophobic surface binding protein A APG17 PF04108.12 gi|389847149|ref|YP_006349388.1| - 0.021 14.0 3.0 0.45 9.6 0.8 2.8 1 1 3 4 4 4 0 Autophagy protein Apg17 TPR_MLP1_2 PF07926.12 gi|389847149|ref|YP_006349388.1| - 0.023 14.8 1.3 4.8 7.3 0.0 3.4 2 1 0 3 3 3 0 TPR/MLP1/MLP2-like protein GAS PF13851.6 gi|389847149|ref|YP_006349388.1| - 0.029 13.7 0.9 1.2 8.4 0.0 3.3 2 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|389847149|ref|YP_006349388.1| - 0.041 14.1 0.5 15 5.8 0.1 3.6 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF2274 PF10038.9 gi|389847149|ref|YP_006349388.1| - 0.047 14.1 0.6 20 5.7 0.0 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2274) SHE3 PF17078.5 gi|389847149|ref|YP_006349388.1| - 0.083 12.6 0.4 0.25 11.0 0.1 1.9 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 DUF1932 PF09130.11 gi|389847149|ref|YP_006349388.1| - 0.14 12.2 2.9 2.4 8.2 0.0 4.0 4 2 1 5 5 5 0 Domain of unknown function (DUF1932) HalX PF08663.10 gi|389847149|ref|YP_006349388.1| - 0.26 11.6 17.3 0.087 13.2 1.7 4.8 4 1 0 4 4 4 0 HalX domain KinB_sensor PF16767.5 gi|389847149|ref|YP_006349388.1| - 0.75 10.3 7.9 4.1 7.9 0.2 3.6 2 2 2 4 4 4 0 Sensor domain of alginate biosynthesis sensor protein KinB MSA-2c PF12238.8 gi|389847149|ref|YP_006349388.1| - 0.82 9.6 5.1 0.86 9.6 3.4 2.0 1 1 0 1 1 1 0 Merozoite surface antigen 2c TFIID_20kDa PF03847.13 gi|389847149|ref|YP_006349388.1| - 1.3 9.6 8.9 11 6.6 0.5 4.3 3 2 1 4 4 4 0 Transcription initiation factor TFIID subunit A MMPL PF03176.15 gi|389847149|ref|YP_006349388.1| - 1.4 7.7 5.1 1 8.2 0.8 2.3 1 1 1 2 2 2 0 MMPL family Mce4_CUP1 PF11887.8 gi|389847149|ref|YP_006349388.1| - 1.6 8.1 3.9 3.4 7.0 0.4 2.6 1 1 3 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative VPS11_C PF12451.8 gi|389847149|ref|YP_006349388.1| - 2.9 8.2 6.9 20 5.5 0.3 3.6 2 1 1 3 3 3 0 Vacuolar protein sorting protein 11 C terminal DUF848 PF05852.11 gi|389847149|ref|YP_006349388.1| - 6 7.0 15.0 0.81 9.8 0.4 3.3 2 1 2 4 4 3 0 Gammaherpesvirus protein of unknown function (DUF848) Gas_vesicle PF00741.18 gi|389847150|ref|YP_006349389.1| - 1e-14 54.4 5.7 1.3e-14 54.0 5.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpD PF07088.11 gi|389847151|ref|YP_006349390.1| - 3.5e-237 787.7 0.0 4.1e-237 787.5 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein ATPase PF06745.13 gi|389847151|ref|YP_006349390.1| - 1.6e-11 44.0 0.1 1.3e-08 34.5 0.0 2.5 2 1 0 2 2 2 2 KaiC AAA_16 PF13191.6 gi|389847151|ref|YP_006349390.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|389847151|ref|YP_006349390.1| - 0.016 14.8 0.1 0.048 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|389847151|ref|YP_006349390.1| - 0.047 13.8 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|389847151|ref|YP_006349390.1| - 0.22 10.7 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PadR PF03551.14 gi|389847152|ref|YP_006349391.1| - 5.4e-08 32.7 0.0 1.2e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|389847152|ref|YP_006349391.1| - 0.014 15.5 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_40 PF14493.6 gi|389847152|ref|YP_006349391.1| - 0.041 14.3 0.0 0.075 13.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|389847152|ref|YP_006349391.1| - 0.072 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GvpL_GvpF PF06386.11 gi|389847153|ref|YP_006349392.1| - 3.2e-40 138.6 0.5 9.9e-21 74.8 0.2 2.0 1 1 0 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF GvpG PF05120.12 gi|389847154|ref|YP_006349393.1| - 0.0026 17.7 4.5 0.0028 17.6 4.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein G DHR10 PF18595.1 gi|389847154|ref|YP_006349393.1| - 0.0099 15.9 6.2 0.011 15.8 6.2 1.1 1 0 0 1 1 1 1 Designed helical repeat protein 10 domain GvpH PF05455.11 gi|389847155|ref|YP_006349394.1| - 1.1e-56 191.6 5.9 1.7e-56 191.1 5.9 1.2 1 0 0 1 1 1 1 GvpH ArsA_HSP20 PF17886.1 gi|389847155|ref|YP_006349394.1| - 0.0017 17.9 0.3 0.08 12.5 0.2 2.2 2 0 0 2 2 2 1 HSP20-like domain found in ArsA DUF3971 PF13116.6 gi|389847155|ref|YP_006349394.1| - 0.21 11.1 0.0 0.3 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function SH3BGR PF04908.15 gi|389847156|ref|YP_006349395.1| - 0.046 13.9 0.7 0.093 12.9 0.7 1.5 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein CEND1 PF15677.5 gi|389847156|ref|YP_006349395.1| - 5.8 7.5 9.5 2.4 8.7 7.1 1.7 1 1 1 2 2 2 0 Cell cycle exit and neuronal differentiation protein 1 Gas_vesicle PF00741.18 gi|389847157|ref|YP_006349396.1| - 2.6e-15 56.3 3.4 3.3e-15 55.9 3.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein SASP_gamma PF04259.14 gi|389847157|ref|YP_006349396.1| - 0.062 13.8 0.0 0.1 13.2 0.0 1.3 1 0 0 1 1 1 0 Small, acid-soluble spore protein, gamma-type GvpK PF05121.12 gi|389847158|ref|YP_006349397.1| - 6e-26 90.3 6.6 7.6e-26 90.0 6.6 1.1 1 0 0 1 1 1 1 Gas vesicle protein K FlxA PF14282.6 gi|389847158|ref|YP_006349397.1| - 0.0032 17.4 0.4 0.0039 17.2 0.4 1.2 1 0 0 1 1 1 1 FlxA-like protein Csm1_N PF18504.1 gi|389847158|ref|YP_006349397.1| - 0.012 15.9 2.8 0.022 15.1 2.8 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain Rx_N PF18052.1 gi|389847158|ref|YP_006349397.1| - 0.012 15.9 2.8 0.015 15.6 2.8 1.1 1 0 0 1 1 1 0 Rx N-terminal domain CK2S PF15011.6 gi|389847158|ref|YP_006349397.1| - 0.038 13.9 0.3 0.043 13.7 0.3 1.1 1 0 0 1 1 1 0 Casein Kinase 2 substrate End3 PF12761.7 gi|389847158|ref|YP_006349397.1| - 0.071 13.3 1.5 0.086 13.0 1.5 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Jnk-SapK_ap_N PF09744.9 gi|389847158|ref|YP_006349397.1| - 0.1 12.8 6.6 0.17 12.1 6.6 1.4 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 Spc24 PF08286.11 gi|389847158|ref|YP_006349397.1| - 0.18 12.1 1.3 0.23 11.7 1.3 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 SlyX PF04102.12 gi|389847158|ref|YP_006349397.1| - 0.56 10.9 3.8 2.6 8.7 3.8 2.2 1 1 0 1 1 1 0 SlyX GvpL_GvpF PF06386.11 gi|389847159|ref|YP_006349398.1| - 1.9e-69 234.3 2.3 2.8e-69 233.8 2.3 1.3 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF DUF1098 PF06497.11 gi|389847159|ref|YP_006349398.1| - 0.059 13.8 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) Cnd1_N PF12922.7 gi|389847159|ref|YP_006349398.1| - 1.6 8.6 4.2 5.5 6.8 4.2 1.9 1 1 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1, N-term Gas_vesicle PF00741.18 gi|389847160|ref|YP_006349399.1| - 4.5e-13 49.1 6.3 5.3e-13 48.9 6.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein O_anti_polymase PF01901.16 gi|389847160|ref|YP_006349399.1| - 0.016 14.5 0.0 0.018 14.3 0.0 1.0 1 0 0 1 1 1 0 Putative O-antigen polymerase DUF4764 PF15961.5 gi|389847161|ref|YP_006349400.1| - 0.0089 14.8 0.0 0.01 14.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) zf-C2H2_jaz PF12171.8 gi|389847161|ref|YP_006349400.1| - 0.17 12.2 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding HTH_20 PF12840.7 gi|389847162|ref|YP_006349401.1| - 5.4e-14 52.0 0.4 9.8e-14 51.2 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389847162|ref|YP_006349401.1| - 1.5e-07 31.2 0.1 2.6e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|389847162|ref|YP_006349401.1| - 3.2e-07 30.1 0.0 5.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|389847162|ref|YP_006349401.1| - 4.2e-06 26.2 0.0 9.1e-06 25.1 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389847162|ref|YP_006349401.1| - 0.0017 18.2 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|389847162|ref|YP_006349401.1| - 0.015 14.8 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|389847162|ref|YP_006349401.1| - 0.025 14.5 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|389847162|ref|YP_006349401.1| - 0.042 14.4 0.0 0.072 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|389847162|ref|YP_006349401.1| - 0.076 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|389847162|ref|YP_006349401.1| - 0.19 11.7 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain META PF03724.16 gi|389847163|ref|YP_006349402.1| - 0.0057 16.6 0.5 1.2 9.1 0.0 2.7 3 0 0 3 3 3 2 META domain TAT_signal PF10518.9 gi|389847163|ref|YP_006349402.1| - 0.25 11.3 5.4 0.56 10.1 5.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HisG PF01634.18 gi|389847166|ref|YP_006349405.1| - 0.0029 17.6 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase U-box PF04564.15 gi|389847166|ref|YP_006349405.1| - 0.08 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 U-box domain DUF3349 PF11829.8 gi|389847166|ref|YP_006349405.1| - 0.13 13.0 0.1 12 6.7 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3349) Spc7 PF08317.11 gi|662859476|ref|YP_006349406.2| - 3.5e-09 36.0 21.9 5.9e-05 22.1 6.7 3.3 1 1 2 3 3 3 3 Spc7 kinetochore protein EzrA PF06160.12 gi|662859476|ref|YP_006349406.2| - 1.1e-07 30.4 15.8 1.3e-05 23.6 1.7 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA DUF16 PF01519.16 gi|662859476|ref|YP_006349406.2| - 1.7e-07 31.7 9.4 0.014 15.9 0.4 4.3 2 1 2 4 4 4 2 Protein of unknown function DUF16 Exonuc_VII_L PF02601.15 gi|662859476|ref|YP_006349406.2| - 3.9e-07 29.9 8.1 0.00039 20.1 3.1 2.4 1 1 1 2 2 2 2 Exonuclease VII, large subunit MscS_porin PF12795.7 gi|662859476|ref|YP_006349406.2| - 1.1e-06 28.4 18.6 0.00037 20.1 7.8 3.4 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain HMMR_N PF15905.5 gi|662859476|ref|YP_006349406.2| - 1.9e-06 27.6 13.4 0.0022 17.5 3.4 3.0 1 1 1 3 3 3 2 Hyaluronan mediated motility receptor N-terminal Baculo_PEP_C PF04513.12 gi|662859476|ref|YP_006349406.2| - 4.6e-06 26.7 8.3 0.28 11.2 1.1 4.5 1 1 3 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|662859476|ref|YP_006349406.2| - 6.9e-06 25.0 12.3 0.0005 18.9 4.3 2.3 1 1 1 2 2 2 2 AAA domain Fib_alpha PF08702.10 gi|662859476|ref|YP_006349406.2| - 9.5e-06 25.8 6.5 0.0013 19.0 0.3 3.5 2 1 2 4 4 4 1 Fibrinogen alpha/beta chain family FliJ PF02050.16 gi|662859476|ref|YP_006349406.2| - 1.1e-05 25.6 4.2 0.16 12.2 0.6 3.7 1 1 2 3 3 3 1 Flagellar FliJ protein XhlA PF10779.9 gi|662859476|ref|YP_006349406.2| - 1.1e-05 25.5 22.0 0.078 13.2 0.1 5.9 4 1 1 5 5 5 2 Haemolysin XhlA Tropomyosin PF00261.20 gi|662859476|ref|YP_006349406.2| - 2.1e-05 24.0 22.5 2.1e-05 24.0 22.5 2.3 2 1 1 3 3 2 1 Tropomyosin DUF1664 PF07889.12 gi|662859476|ref|YP_006349406.2| - 2.3e-05 24.4 16.7 0.025 14.6 1.6 5.3 1 1 5 6 6 6 1 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|662859476|ref|YP_006349406.2| - 2.3e-05 23.6 6.1 0.02 14.0 0.8 2.5 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 Laminin_I PF06008.14 gi|662859476|ref|YP_006349406.2| - 0.00016 21.5 11.9 0.00043 20.1 1.7 4.0 2 1 3 5 5 4 2 Laminin Domain I Fez1 PF06818.15 gi|662859476|ref|YP_006349406.2| - 0.00019 22.0 17.1 5.4 7.4 13.5 3.3 1 1 2 3 3 3 0 Fez1 MAD PF05557.13 gi|662859476|ref|YP_006349406.2| - 0.00025 19.6 15.7 0.0045 15.4 7.8 2.4 1 1 1 2 2 2 2 Mitotic checkpoint protein DUF4200 PF13863.6 gi|662859476|ref|YP_006349406.2| - 0.00062 20.2 10.7 0.66 10.4 0.5 4.8 1 1 3 4 4 4 1 Domain of unknown function (DUF4200) FPP PF05911.11 gi|662859476|ref|YP_006349406.2| - 0.00079 17.8 13.7 0.0014 16.9 1.0 2.2 1 1 1 2 2 2 1 Filament-like plant protein, long coiled-coil DUF5082 PF16888.5 gi|662859476|ref|YP_006349406.2| - 0.0011 19.2 13.1 1.1 9.5 3.5 5.0 1 1 3 5 5 5 1 Domain of unknown function (DUF5082) TPR_MLP1_2 PF07926.12 gi|662859476|ref|YP_006349406.2| - 0.0013 18.8 24.3 0.17 11.9 0.1 5.4 2 1 3 5 5 4 2 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|662859476|ref|YP_006349406.2| - 0.0014 18.9 17.8 1.2 9.5 0.8 5.3 1 1 6 7 7 7 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0242 PF06785.11 gi|662859476|ref|YP_006349406.2| - 0.0015 18.6 16.8 0.051 13.7 2.0 3.5 2 1 2 4 4 3 2 Uncharacterised protein family (UPF0242) N-terminus Nup54 PF13874.6 gi|662859476|ref|YP_006349406.2| - 0.0023 18.0 8.6 0.027 14.6 0.4 3.3 2 1 1 3 3 2 1 Nucleoporin complex subunit 54 Filament PF00038.21 gi|662859476|ref|YP_006349406.2| - 0.0026 17.4 22.6 0.11 12.0 2.1 3.4 1 1 1 3 3 3 2 Intermediate filament protein Lebercilin PF15619.6 gi|662859476|ref|YP_006349406.2| - 0.0028 17.3 12.2 0.065 12.9 5.0 2.9 2 1 1 3 3 3 1 Ciliary protein causing Leber congenital amaurosis disease COG2 PF06148.11 gi|662859476|ref|YP_006349406.2| - 0.003 17.6 13.7 3.8 7.6 0.8 4.9 1 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.16 gi|662859476|ref|YP_006349406.2| - 0.0033 16.6 6.2 1 8.4 0.3 4.0 1 1 3 4 4 4 1 RmuC family CENP-F_leu_zip PF10473.9 gi|662859476|ref|YP_006349406.2| - 0.0038 17.2 3.6 0.0038 17.2 3.6 3.9 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin_1 PF12718.7 gi|662859476|ref|YP_006349406.2| - 0.0062 16.7 10.0 0.0062 16.7 10.0 3.4 1 1 2 3 3 3 1 Tropomyosin like FlaC_arch PF05377.11 gi|662859476|ref|YP_006349406.2| - 0.0062 16.9 14.9 1.2 9.6 0.3 6.5 3 2 5 8 8 7 1 Flagella accessory protein C (FlaC) Flagellin_C PF00700.21 gi|662859476|ref|YP_006349406.2| - 0.0071 16.7 11.3 3.4 8.1 0.2 5.0 2 1 3 5 5 4 0 Bacterial flagellin C-terminal helical region TMPIT PF07851.13 gi|662859476|ref|YP_006349406.2| - 0.011 15.0 3.4 3.2 6.9 0.3 2.9 1 1 3 4 4 4 0 TMPIT-like protein Prominin PF05478.11 gi|662859476|ref|YP_006349406.2| - 0.012 13.6 3.8 0.071 11.1 0.3 2.1 1 1 1 2 2 2 0 Prominin KxDL PF10241.9 gi|662859476|ref|YP_006349406.2| - 0.012 15.8 3.2 39 4.6 0.0 4.5 1 1 3 4 4 4 0 Uncharacterized conserved protein Seryl_tRNA_N PF02403.22 gi|662859476|ref|YP_006349406.2| - 0.013 15.8 12.0 0.6 10.4 0.1 5.2 1 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF3552 PF12072.8 gi|662859476|ref|YP_006349406.2| - 0.013 14.9 22.3 0.5 9.8 8.3 4.2 1 1 3 4 4 4 0 Domain of unknown function (DUF3552) Sec2p PF06428.11 gi|662859476|ref|YP_006349406.2| - 0.016 15.2 8.9 2.5 8.1 0.9 4.4 1 1 3 4 4 4 0 GDP/GTP exchange factor Sec2p HemX PF04375.14 gi|662859476|ref|YP_006349406.2| - 0.017 14.4 12.2 1 8.6 1.0 3.8 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF724 PF05266.14 gi|662859476|ref|YP_006349406.2| - 0.018 14.9 10.5 2.4 8.0 1.4 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF724) PI3K_P85_iSH2 PF16454.5 gi|662859476|ref|YP_006349406.2| - 0.021 14.4 2.0 2.7 7.6 0.8 3.1 1 1 1 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Snapin_Pallidin PF14712.6 gi|662859476|ref|YP_006349406.2| - 0.024 15.1 8.5 20 5.7 0.4 4.9 1 1 3 4 4 4 0 Snapin/Pallidin Sec34 PF04136.15 gi|662859476|ref|YP_006349406.2| - 0.027 14.3 10.1 0.21 11.5 0.5 4.0 1 1 3 5 5 5 0 Sec34-like family IFT20 PF14931.6 gi|662859476|ref|YP_006349406.2| - 0.029 14.5 3.8 0.13 12.5 0.3 3.1 1 1 2 3 3 3 0 Intraflagellar transport complex B, subunit 20 Occludin_ELL PF07303.13 gi|662859476|ref|YP_006349406.2| - 0.029 15.1 1.5 24 5.7 0.2 3.7 1 1 2 4 4 4 0 Occludin homology domain Laminin_II PF06009.12 gi|662859476|ref|YP_006349406.2| - 0.03 14.3 19.5 0.12 12.4 0.9 4.7 2 1 4 6 6 5 0 Laminin Domain II DUF2730 PF10805.8 gi|662859476|ref|YP_006349406.2| - 0.038 14.1 8.6 2 8.6 0.1 4.8 1 1 3 5 5 5 0 Protein of unknown function (DUF2730) ZapB PF06005.12 gi|662859476|ref|YP_006349406.2| - 0.042 14.3 11.5 1.2 9.6 0.4 4.9 3 1 1 4 4 4 0 Cell division protein ZapB DHR10 PF18595.1 gi|662859476|ref|YP_006349406.2| - 0.048 13.7 26.7 0.39 10.8 2.4 5.6 1 1 3 5 5 5 0 Designed helical repeat protein 10 domain TACC_C PF05010.14 gi|662859476|ref|YP_006349406.2| - 0.049 13.4 9.4 0.062 13.1 2.1 2.9 1 1 2 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Bacillus_HBL PF05791.11 gi|662859476|ref|YP_006349406.2| - 0.054 13.3 5.0 6.4 6.6 0.1 3.3 1 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) LUC7 PF03194.15 gi|662859476|ref|YP_006349406.2| - 0.054 13.2 10.4 0.014 15.1 2.2 2.6 1 1 0 2 2 2 0 LUC7 N_terminus COG6 PF06419.11 gi|662859476|ref|YP_006349406.2| - 0.058 11.6 2.9 2 6.5 0.3 2.4 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 GAS PF13851.6 gi|662859476|ref|YP_006349406.2| - 0.06 12.7 8.1 2.2 7.6 0.2 2.9 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding DUF3347 PF11827.8 gi|662859476|ref|YP_006349406.2| - 0.071 13.3 0.2 0.071 13.3 0.2 3.2 2 2 1 3 3 2 0 Protein of unknown function (DUF3347) TBCC_N PF16752.5 gi|662859476|ref|YP_006349406.2| - 0.075 13.5 16.1 0.23 11.9 0.5 3.9 1 1 3 4 4 4 0 Tubulin-specific chaperone C N-terminal domain TMF_DNA_bd PF12329.8 gi|662859476|ref|YP_006349406.2| - 0.093 12.7 12.3 0.53 10.3 0.1 5.2 2 1 1 5 5 5 0 TATA element modulatory factor 1 DNA binding DASH_Dam1 PF08653.10 gi|662859476|ref|YP_006349406.2| - 0.097 12.5 10.4 17 5.3 0.0 6.1 5 3 1 6 6 5 0 DASH complex subunit Dam1 NPV_P10 PF05531.12 gi|662859476|ref|YP_006349406.2| - 0.11 13.0 27.5 0.52 10.8 2.2 6.9 2 1 2 5 5 4 0 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.8 gi|662859476|ref|YP_006349406.2| - 0.12 9.9 35.8 0.021 12.3 6.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3584) BRE1 PF08647.11 gi|662859476|ref|YP_006349406.2| - 0.15 12.2 2.5 16 5.6 0.4 3.1 3 0 0 3 3 2 0 BRE1 E3 ubiquitin ligase DUF4201 PF13870.6 gi|662859476|ref|YP_006349406.2| - 0.2 11.3 7.4 1.4 8.6 2.2 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) Nsp1_C PF05064.13 gi|662859476|ref|YP_006349406.2| - 0.22 11.4 6.5 3.3 7.5 1.5 2.8 1 1 1 2 2 2 0 Nsp1-like C-terminal region Sec8_exocyst PF04048.14 gi|662859476|ref|YP_006349406.2| - 0.25 11.2 3.2 1.9 8.4 0.2 2.8 1 1 0 2 2 2 0 Sec8 exocyst complex component specific domain DUF745 PF05335.13 gi|662859476|ref|YP_006349406.2| - 0.25 11.0 0.0 0.25 11.0 0.0 3.5 1 1 4 5 5 3 0 Protein of unknown function (DUF745) TMF_TATA_bd PF12325.8 gi|662859476|ref|YP_006349406.2| - 0.26 11.5 26.8 0.82 9.9 6.2 5.2 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding Alpha-2-MRAP_C PF06401.11 gi|662859476|ref|YP_006349406.2| - 0.26 11.2 6.0 0.46 10.4 1.7 2.5 2 0 0 2 2 2 0 Alpha-2-macroglobulin RAP, C-terminal domain DUF4618 PF15397.6 gi|662859476|ref|YP_006349406.2| - 0.3 10.5 7.6 1.9 7.9 2.4 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) Golgin_A5 PF09787.9 gi|662859476|ref|YP_006349406.2| - 0.32 10.4 20.9 1.2 8.5 4.2 3.6 1 1 3 4 4 4 0 Golgin subfamily A member 5 DUF3450 PF11932.8 gi|662859476|ref|YP_006349406.2| - 0.33 10.2 23.8 2.9 7.1 1.7 4.9 1 1 5 6 6 6 0 Protein of unknown function (DUF3450) ABC_tran_CTD PF16326.5 gi|662859476|ref|YP_006349406.2| - 0.36 11.1 29.8 0.26 11.6 0.2 6.8 3 2 4 7 7 7 0 ABC transporter C-terminal domain IFT57 PF10498.9 gi|662859476|ref|YP_006349406.2| - 0.39 9.7 26.1 0.034 13.1 2.0 3.4 2 1 1 3 3 2 0 Intra-flagellar transport protein 57 CdvA PF18822.1 gi|662859476|ref|YP_006349406.2| - 0.39 10.5 12.5 5.1 6.9 0.1 4.9 1 1 4 5 5 5 0 CdvA-like coiled-coil domain APG6_N PF17675.1 gi|662859476|ref|YP_006349406.2| - 0.45 11.1 29.6 1.6 9.2 7.5 4.1 1 1 1 2 2 2 0 Apg6 coiled-coil region RPW8 PF05659.11 gi|662859476|ref|YP_006349406.2| - 0.54 9.9 3.8 10 5.8 0.1 3.9 1 1 3 5 5 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 RasGAP_C PF03836.15 gi|662859476|ref|YP_006349406.2| - 0.56 10.3 4.3 28 4.9 0.1 3.5 1 1 1 2 2 2 0 RasGAP C-terminus CEP63 PF17045.5 gi|662859476|ref|YP_006349406.2| - 0.56 10.1 15.6 0.62 9.9 11.6 2.3 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa ATPase PF06745.13 gi|662859476|ref|YP_006349406.2| - 0.87 8.9 5.6 0.52 9.6 0.0 2.8 2 1 0 3 3 3 0 KaiC YabA PF06156.13 gi|662859476|ref|YP_006349406.2| - 1 10.0 4.4 4.4 8.0 0.2 3.4 1 1 1 3 3 3 0 Initiation control protein YabA BST2 PF16716.5 gi|662859476|ref|YP_006349406.2| - 1.2 9.8 10.8 6.1 7.5 1.2 4.4 1 1 4 6 6 3 0 Bone marrow stromal antigen 2 Jnk-SapK_ap_N PF09744.9 gi|662859476|ref|YP_006349406.2| - 1.3 9.3 25.7 1.1 9.4 6.5 3.9 1 1 3 4 4 4 0 JNK_SAPK-associated protein-1 Fzo_mitofusin PF04799.13 gi|662859476|ref|YP_006349406.2| - 1.6 8.2 8.9 23 4.5 0.2 4.1 1 1 4 5 5 5 0 fzo-like conserved region HAUS-augmin3 PF14932.6 gi|662859476|ref|YP_006349406.2| - 2.1 7.9 12.1 7.4 6.1 3.1 2.8 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Muted PF14942.6 gi|662859476|ref|YP_006349406.2| - 2.2 8.6 12.4 1.8 8.9 1.1 3.5 1 1 3 4 4 4 0 Organelle biogenesis, Muted-like protein ATG16 PF08614.11 gi|662859476|ref|YP_006349406.2| - 2.2 8.4 39.0 0.11 12.7 16.6 4.1 1 1 3 4 4 3 0 Autophagy protein 16 (ATG16) SesA PF17107.5 gi|662859476|ref|YP_006349406.2| - 2.3 8.4 5.8 5.1 7.3 0.6 3.6 1 1 1 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DegS PF05384.11 gi|662859476|ref|YP_006349406.2| - 3 7.3 8.8 8 5.9 0.7 2.9 2 1 0 2 2 2 0 Sensor protein DegS Prefoldin_2 PF01920.20 gi|662859476|ref|YP_006349406.2| - 3.4 7.7 16.0 33 4.5 0.1 6.0 2 1 4 7 7 7 0 Prefoldin subunit AATF-Che1 PF13339.6 gi|662859476|ref|YP_006349406.2| - 3.6 8.3 6.7 8.5e+02 0.6 6.7 3.1 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor COG7 PF10191.9 gi|662859476|ref|YP_006349406.2| - 3.6 5.7 13.8 0.037 12.3 2.1 2.3 1 1 0 2 2 2 0 Golgi complex component 7 (COG7) DUF2203 PF09969.9 gi|662859476|ref|YP_006349406.2| - 3.7 8.3 14.0 4.4 8.0 1.4 4.2 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DLP_helical PF18709.1 gi|662859476|ref|YP_006349406.2| - 3.9 6.6 12.2 1.1 8.4 0.4 3.6 1 1 2 4 4 4 0 Dynamin-like helical domain TSNAXIP1_N PF15739.5 gi|662859476|ref|YP_006349406.2| - 4.1 7.8 6.8 23 5.4 0.6 3.2 2 2 1 3 3 3 0 Translin-associated factor X-interacting N-terminus DUF2746 PF10874.8 gi|662859476|ref|YP_006349406.2| - 5.4 7.5 11.8 4.6 7.7 1.4 3.3 2 1 1 3 3 2 0 Protein of unknown function (DUF2746) FemAB PF02388.16 gi|662859476|ref|YP_006349406.2| - 5.7 5.7 8.6 11 4.8 0.3 3.4 1 1 3 4 4 4 0 FemAB family CREPT PF16566.5 gi|662859476|ref|YP_006349406.2| - 7.3 6.8 9.4 11 6.2 0.7 3.7 1 1 4 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour SlyX PF04102.12 gi|662859476|ref|YP_006349406.2| - 7.9 7.2 19.2 3.9 8.2 0.4 5.7 1 1 4 6 6 6 0 SlyX Leu_zip PF15294.6 gi|662859476|ref|YP_006349406.2| - 8.5 5.8 13.0 5.1 6.5 2.0 2.8 1 1 2 3 3 3 0 Leucine zipper DUF1515 PF07439.11 gi|662859476|ref|YP_006349406.2| - 8.7 6.4 11.8 0.12 12.4 0.6 3.2 2 2 3 5 5 3 0 Protein of unknown function (DUF1515) CLZ PF16526.5 gi|662859476|ref|YP_006349406.2| - 9.4 6.7 20.5 5.8 7.4 0.8 5.7 1 1 5 7 7 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Lactamase_B_2 PF12706.7 gi|662859477|ref|YP_006349407.2| - 5.4e-18 65.2 1.1 6.8e-18 64.9 1.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|662859477|ref|YP_006349407.2| - 2.6e-10 40.4 0.2 3.8e-10 39.9 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|662859477|ref|YP_006349407.2| - 0.17 11.8 11.6 1.3 9.0 11.6 2.2 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily LDcluster4 PF18306.1 gi|389847169|ref|YP_006349408.1| - 3e-37 127.6 1.8 3.3e-37 127.5 1.8 1.0 1 0 0 1 1 1 1 SLOG cluster4 family DNA_processg_A PF02481.15 gi|389847169|ref|YP_006349408.1| - 9.4e-06 25.0 1.2 3.5e-05 23.2 0.5 1.9 2 0 0 2 2 2 1 DNA recombination-mediator protein A Lysine_decarbox PF03641.14 gi|389847169|ref|YP_006349408.1| - 3.6e-05 23.9 0.3 7.3e-05 22.9 0.2 1.5 2 0 0 2 2 2 1 Possible lysine decarboxylase Flavodoxin_5 PF12724.7 gi|389847170|ref|YP_006349409.1| - 0.19 11.9 0.0 0.41 10.9 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain Diphthamide_syn PF01866.17 gi|389847171|ref|YP_006349410.1| - 8.4e-76 255.3 0.0 1.1e-75 255.0 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Peptidase_S66 PF02016.15 gi|389847171|ref|YP_006349410.1| - 0.0074 16.4 0.0 1 9.5 0.0 2.6 3 0 0 3 3 3 1 LD-carboxypeptidase N-terminal domain GTP-bdg_N PF13167.6 gi|389847171|ref|YP_006349410.1| - 0.012 16.3 0.0 0.51 11.1 0.0 2.4 1 1 1 2 2 2 0 GTP-binding GTPase N-terminal CCB1 PF12046.8 gi|389847171|ref|YP_006349410.1| - 0.24 10.7 0.0 0.48 9.8 0.0 1.4 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Zn-ribbon_8 PF09723.10 gi|389847172|ref|YP_006349411.1| - 0.0011 19.0 0.4 0.06 13.5 0.2 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|389847172|ref|YP_006349411.1| - 0.036 13.5 1.7 0.081 12.4 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|389847172|ref|YP_006349411.1| - 0.04 13.9 0.2 2.3 8.2 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF4379 PF14311.6 gi|389847172|ref|YP_006349411.1| - 0.041 14.2 0.2 0.6 10.5 0.0 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389847172|ref|YP_006349411.1| - 0.047 13.2 1.3 1.7 8.3 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|389847172|ref|YP_006349411.1| - 0.093 12.7 1.7 3.5 7.6 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF3268 PF11672.8 gi|389847172|ref|YP_006349411.1| - 0.11 12.9 0.1 0.9 9.9 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain DUF2321 PF10083.9 gi|389847172|ref|YP_006349411.1| - 0.12 12.0 1.4 0.19 11.3 1.4 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Mut7-C PF01927.16 gi|389847172|ref|YP_006349411.1| - 0.14 12.3 0.1 0.23 11.6 0.1 1.4 1 1 0 1 1 1 0 Mut7-C RNAse domain zf_C2H2_13 PF18508.1 gi|389847172|ref|YP_006349411.1| - 0.17 11.5 1.6 2.1 8.0 0.2 2.3 2 0 0 2 2 2 0 Zinc finger domain zinc_ribbon_2 PF13240.6 gi|389847172|ref|YP_006349411.1| - 0.48 10.2 4.0 1.6 8.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|389847172|ref|YP_006349411.1| - 1.4 9.1 4.3 23 5.2 0.5 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Abhydrolase_2 PF02230.16 gi|662859478|ref|YP_006349412.2| - 2.5e-21 76.5 0.0 3e-21 76.2 0.0 1.0 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|662859478|ref|YP_006349412.2| - 1e-07 31.7 0.0 1.6e-07 31.1 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|662859478|ref|YP_006349412.2| - 5.5e-06 26.0 0.0 0.017 14.6 0.0 2.7 2 1 1 3 3 3 2 Prolyl oligopeptidase family Esterase PF00756.20 gi|662859478|ref|YP_006349412.2| - 5.7e-05 22.9 0.0 7.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Putative esterase LIP PF03583.14 gi|662859478|ref|YP_006349412.2| - 0.00095 18.6 0.0 0.48 9.7 0.0 2.1 1 1 1 2 2 2 2 Secretory lipase FSH1 PF03959.13 gi|662859478|ref|YP_006349412.2| - 0.0063 16.2 0.0 0.019 14.6 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Hydrolase_4 PF12146.8 gi|662859478|ref|YP_006349412.2| - 0.013 14.8 0.1 5.3 6.2 0.0 2.6 1 1 1 2 2 2 0 Serine aminopeptidase, S33 Esterase_phd PF10503.9 gi|662859478|ref|YP_006349412.2| - 0.072 12.6 0.1 0.41 10.1 0.1 2.2 1 1 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_3 PF07859.13 gi|662859478|ref|YP_006349412.2| - 0.088 12.7 0.0 11 5.9 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Com_YlbF PF06133.11 gi|389847174|ref|YP_006349413.1| - 1.2e-23 83.8 5.7 1.3e-23 83.6 5.7 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA SH3BP5 PF05276.14 gi|389847174|ref|YP_006349413.1| - 3.7e-05 23.6 2.7 4.8e-05 23.3 2.7 1.1 1 0 0 1 1 1 1 SH3 domain-binding protein 5 (SH3BP5) OmpH PF03938.14 gi|389847174|ref|YP_006349413.1| - 0.003 17.9 5.5 0.0039 17.5 5.5 1.1 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Seryl_tRNA_N PF02403.22 gi|389847174|ref|YP_006349413.1| - 0.011 15.9 3.6 0.016 15.4 3.6 1.3 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain BMFP PF04380.13 gi|389847174|ref|YP_006349413.1| - 0.019 15.4 4.0 0.044 14.3 4.0 1.6 1 1 0 1 1 1 0 Membrane fusogenic activity DUF3080 PF11279.8 gi|389847174|ref|YP_006349413.1| - 0.027 13.7 0.3 0.03 13.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) DUF3280 PF11684.8 gi|389847174|ref|YP_006349413.1| - 0.068 13.6 0.7 0.19 12.1 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2380) HemX PF04375.14 gi|389847174|ref|YP_006349413.1| - 0.092 12.0 2.4 0.1 11.9 2.4 1.1 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF2508 PF10704.9 gi|389847174|ref|YP_006349413.1| - 0.093 12.9 1.9 0.22 11.7 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2508) CENP-F_leu_zip PF10473.9 gi|389847174|ref|YP_006349413.1| - 0.19 11.7 7.0 0.32 11.0 7.0 1.4 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HalX PF08663.10 gi|389847174|ref|YP_006349413.1| - 0.22 11.9 5.6 2 8.8 1.6 3.0 2 1 1 3 3 3 0 HalX domain APG6_N PF17675.1 gi|389847174|ref|YP_006349413.1| - 1.8 9.1 8.7 0.87 10.1 6.6 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region CbiA PF01656.23 gi|389847175|ref|YP_006349414.1| - 2.2e-14 53.6 0.0 2.9e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|389847175|ref|YP_006349414.1| - 3.1e-10 39.9 1.5 6.8e-05 22.4 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|389847175|ref|YP_006349414.1| - 5.8e-06 26.3 0.0 0.00014 21.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|389847175|ref|YP_006349414.1| - 5e-05 23.2 1.5 0.22 11.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|389847175|ref|YP_006349414.1| - 6e-05 22.4 0.0 7.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|389847175|ref|YP_006349414.1| - 0.0062 16.1 0.0 0.52 9.7 0.1 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Zeta_toxin PF06414.12 gi|389847175|ref|YP_006349414.1| - 0.03 13.6 0.1 0.046 13.0 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|389847175|ref|YP_006349414.1| - 0.19 11.9 0.6 0.41 10.8 0.6 1.8 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|389847176|ref|YP_006349415.1| - 1.4e-06 27.8 0.0 0.029 13.7 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.11 gi|389847176|ref|YP_006349415.1| - 0.14 11.3 0.0 0.28 10.3 0.0 1.5 2 0 0 2 2 2 0 PAXNEB protein FKBP_C PF00254.28 gi|662859479|ref|YP_006349417.2| - 2e-07 31.3 0.1 4.9e-07 30.0 0.1 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.14 gi|662859479|ref|YP_006349417.2| - 0.6 9.8 2.4 0.53 10.0 0.5 1.9 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) E7 PF00527.18 gi|662859479|ref|YP_006349417.2| - 6.6 7.0 9.0 0.49 10.6 1.5 2.6 2 0 0 2 2 2 0 E7 protein, Early protein CoA_binding_3 PF13727.6 gi|389847179|ref|YP_006349418.1| - 0.24 11.4 1.9 1.4 8.9 0.2 2.3 2 0 0 2 2 2 0 CoA-binding domain Ndc1_Nup PF09531.10 gi|389847179|ref|YP_006349418.1| - 0.29 9.8 2.0 1.6 7.3 0.4 2.0 1 1 1 2 2 2 0 Nucleoporin protein Ndc1-Nup EVC2_like PF12297.8 gi|389847179|ref|YP_006349418.1| - 0.35 9.5 0.2 1.1 7.9 0.1 1.7 2 0 0 2 2 2 0 Ellis van Creveld protein 2 like protein OppC_N PF12911.7 gi|389847179|ref|YP_006349418.1| - 0.56 10.2 7.2 4.5 7.3 0.1 3.3 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Cyt_b-c1_8 PF10890.8 gi|389847180|ref|YP_006349419.1| - 0.032 14.6 0.0 0.083 13.3 0.0 1.6 1 0 0 1 1 1 0 Cytochrome b-c1 complex subunit 8 Ion_trans PF00520.31 gi|389847180|ref|YP_006349419.1| - 0.18 11.0 1.6 0.26 10.5 0.2 2.0 2 1 0 2 2 2 0 Ion transport protein zf-Di19 PF05605.12 gi|389847182|ref|YP_006349421.1| - 0.00015 22.0 0.5 0.00029 21.1 0.5 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_9 PF14369.6 gi|389847182|ref|YP_006349421.1| - 0.052 13.8 0.3 0.14 12.5 0.3 1.7 1 0 0 1 1 1 0 zinc-ribbon DUF2256 PF10013.9 gi|389847182|ref|YP_006349421.1| - 0.093 12.9 0.1 0.14 12.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-C2H2_4 PF13894.6 gi|389847182|ref|YP_006349421.1| - 0.29 12.1 1.2 0.98 10.4 0.7 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger COX4_pro PF03626.14 gi|389847185|ref|YP_006349424.1| - 9e-11 42.0 8.1 1.1e-10 41.7 8.1 1.2 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV COX1 PF00115.20 gi|389847186|ref|YP_006349425.1| - 4e-131 437.8 71.5 4e-131 437.8 71.5 3.0 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|389847186|ref|YP_006349425.1| - 1.5e-17 64.3 12.1 1.5e-17 64.3 12.1 3.0 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III COX2 PF00116.20 gi|389847187|ref|YP_006349426.1| - 2.8e-18 65.9 0.0 1.9e-17 63.2 0.0 2.1 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|389847187|ref|YP_006349426.1| - 2e-05 24.6 0.0 4.3e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Cupredoxin-like domain DUF4834 PF16118.5 gi|389847187|ref|YP_006349426.1| - 1.5 9.8 3.8 1.3e+02 3.6 2.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4834) OrfB_Zn_ribbon PF07282.11 gi|389847189|ref|YP_006349428.1| - 3e-20 71.9 0.7 5.6e-20 71.0 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|389847189|ref|YP_006349428.1| - 0.00087 19.2 5.3 0.0016 18.3 5.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain T2SS_PulS_OutS PF09691.10 gi|389847189|ref|YP_006349428.1| - 0.067 13.4 0.1 0.17 12.0 0.1 1.6 1 0 0 1 1 1 0 Type II secretion system pilotin lipoprotein (PulS_OutS) zf-Mss51 PF13824.6 gi|389847189|ref|YP_006349428.1| - 0.19 11.8 2.5 0.55 10.4 2.5 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS91 PF14319.6 gi|389847189|ref|YP_006349428.1| - 0.25 11.4 3.6 0.57 10.3 3.6 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2080 PF09853.9 gi|389847190|ref|YP_006349429.1| - 1.8e-06 27.6 0.0 2.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) CYTH PF01928.21 gi|389847192|ref|YP_006349431.1| - 2e-37 128.8 6.6 2.4e-37 128.6 6.6 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.19 gi|389847193|ref|YP_006349432.1| - 1.2e-174 580.7 5.9 1.4e-174 580.6 5.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|389847193|ref|YP_006349432.1| - 0.092 13.4 0.4 0.44 11.2 0.0 2.3 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain DUF2564 PF10819.8 gi|389847193|ref|YP_006349432.1| - 0.16 12.4 0.0 6.8 7.2 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) Asp23 PF03780.13 gi|389847193|ref|YP_006349432.1| - 0.2 12.1 6.7 1.4 9.3 1.5 3.4 2 1 0 2 2 2 0 Asp23 family, cell envelope-related function PP_kinase_C PF13090.6 gi|389847194|ref|YP_006349433.1| - 1.4e-68 229.7 0.0 1.2e-67 226.7 0.0 2.1 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase_C_1 PF17941.1 gi|389847194|ref|YP_006349433.1| - 1.5e-68 229.6 0.0 2.5e-68 228.9 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase PF02503.17 gi|389847194|ref|YP_006349433.1| - 6.8e-64 215.2 2.5 1.1e-63 214.5 2.5 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|389847194|ref|YP_006349433.1| - 3.3e-38 130.3 0.2 1.3e-37 128.4 0.0 2.1 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|389847194|ref|YP_006349433.1| - 1.4e-10 41.2 0.0 0.00046 20.1 0.1 2.6 2 0 0 2 2 2 2 PLD-like domain ThiI PF02568.14 gi|389847195|ref|YP_006349434.1| - 2.3e-45 154.6 0.0 3e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|389847195|ref|YP_006349434.1| - 1.1e-17 64.5 0.0 1.9e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|389847195|ref|YP_006349434.1| - 3.9e-05 23.3 0.0 0.025 14.1 0.0 2.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|389847195|ref|YP_006349434.1| - 0.018 13.8 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase zf-FCS PF06467.14 gi|389847196|ref|YP_006349435.1| - 0.0083 16.0 0.4 0.03 14.3 0.4 1.8 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif PALP PF00291.25 gi|389847199|ref|YP_006349438.1| - 1.2e-63 215.3 0.2 1.5e-63 215.0 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|389847199|ref|YP_006349438.1| - 0.041 13.9 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Abhydrolase_6 PF12697.7 gi|389847199|ref|YP_006349438.1| - 0.041 14.5 0.1 0.1 13.2 0.1 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase family Thioredoxin PF00085.20 gi|389847200|ref|YP_006349439.1| - 6.6e-05 22.8 0.0 0.00012 22.0 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|389847200|ref|YP_006349439.1| - 0.0078 16.0 0.0 0.021 14.6 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|389847200|ref|YP_006349439.1| - 0.012 15.7 0.0 0.024 14.7 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|389847200|ref|YP_006349439.1| - 0.015 15.7 0.0 0.035 14.5 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|389847200|ref|YP_006349439.1| - 0.025 14.5 0.0 0.044 13.7 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.10 gi|389847200|ref|YP_006349439.1| - 0.049 13.4 0.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 Redoxin Thioredox_DsbH PF03190.15 gi|389847202|ref|YP_006349441.1| - 1.1e-75 253.1 0.0 1.7e-75 252.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|389847202|ref|YP_006349441.1| - 5.8e-12 45.6 0.0 1.4e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like C5-epim_C PF06662.13 gi|389847202|ref|YP_006349441.1| - 0.0034 16.9 0.1 0.028 13.9 0.0 2.2 1 1 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.13 gi|389847202|ref|YP_006349441.1| - 0.0046 16.1 0.0 0.02 14.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 gi|389847202|ref|YP_006349441.1| - 0.0046 16.3 1.9 0.21 10.8 0.1 2.5 1 1 1 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|389847202|ref|YP_006349441.1| - 0.044 13.3 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.6 gi|389847202|ref|YP_006349441.1| - 0.087 13.3 0.1 0.19 12.2 0.1 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain Fe_dep_repr_C PF02742.15 gi|389847202|ref|YP_006349441.1| - 0.14 12.3 0.6 0.57 10.3 0.1 2.3 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain HTH_10 PF04967.12 gi|389847202|ref|YP_006349441.1| - 0.14 11.9 0.3 0.36 10.7 0.1 1.7 2 0 0 2 2 2 0 HTH DNA binding domain Glyco_hydro_127 PF07944.12 gi|389847202|ref|YP_006349441.1| - 0.19 10.2 0.4 6.9 5.0 0.2 2.6 2 1 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 PqqD PF05402.12 gi|389847202|ref|YP_006349441.1| - 0.21 11.9 0.7 6 7.2 0.5 2.7 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) LANC_like PF05147.13 gi|389847202|ref|YP_006349441.1| - 0.25 9.9 0.0 0.72 8.4 0.0 1.7 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein GARS_A PF01071.19 gi|389847203|ref|YP_006349442.1| - 1.5e-51 174.9 0.0 2.6e-51 174.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|389847203|ref|YP_006349442.1| - 3.4e-20 72.6 0.1 7.1e-20 71.6 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|389847203|ref|YP_006349442.1| - 6.9e-15 55.1 0.2 2e-14 53.6 0.2 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|389847203|ref|YP_006349442.1| - 0.00051 20.1 0.0 0.0013 18.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|389847203|ref|YP_006349442.1| - 0.022 14.0 0.0 0.25 10.5 0.0 2.0 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Hexapep_2 PF14602.6 gi|389847204|ref|YP_006349443.1| - 2.8e-09 36.6 1.7 3.4e-07 29.9 0.1 3.0 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|389847204|ref|YP_006349443.1| - 5.7e-08 32.2 6.4 1.1e-06 28.1 0.1 3.2 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) HATPase_c PF02518.26 gi|389847205|ref|YP_006349444.1| - 6.1e-15 55.7 0.1 1.4e-14 54.6 0.0 1.6 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|389847205|ref|YP_006349444.1| - 3.2e-08 33.7 0.7 4.4e-07 30.1 0.1 2.7 2 1 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|389847205|ref|YP_006349444.1| - 1.6e-06 28.0 0.1 4.3e-06 26.6 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|389847205|ref|YP_006349444.1| - 3.5e-06 27.2 0.0 8.1e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|389847205|ref|YP_006349444.1| - 1.5e-05 25.0 0.5 0.00011 22.2 0.0 2.5 3 0 0 3 3 3 1 PAS fold HisKA_4TM PF16926.5 gi|389847205|ref|YP_006349444.1| - 9.8e-05 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|389847205|ref|YP_006349444.1| - 0.00019 21.4 0.1 0.00044 20.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|389847205|ref|YP_006349444.1| - 0.00033 20.9 0.6 0.0079 16.5 0.0 2.6 2 0 0 2 2 2 1 PAS fold SPOB_a PF14689.6 gi|389847205|ref|YP_006349444.1| - 0.00053 19.6 0.5 0.0013 18.4 0.5 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|389847205|ref|YP_006349444.1| - 0.0013 18.6 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain DUF2226 PF09987.9 gi|389847205|ref|YP_006349444.1| - 0.0023 17.3 2.1 0.0039 16.6 2.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) HisKA PF00512.25 gi|389847205|ref|YP_006349444.1| - 0.0067 16.4 0.6 0.014 15.4 0.6 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DPBB_1 PF03330.18 gi|389847205|ref|YP_006349444.1| - 0.078 13.3 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Lytic transglycolase MS_channel PF00924.18 gi|389847207|ref|YP_006349446.1| - 2.9e-14 53.1 1.8 2.9e-14 53.1 1.8 2.1 2 1 1 3 3 3 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|389847207|ref|YP_006349446.1| - 1.2e-07 31.6 18.8 9.5e-05 22.3 0.9 3.4 3 0 0 3 3 3 2 Conserved TM helix DisA_N PF02457.16 gi|389847208|ref|YP_006349447.1| - 1.9e-20 72.6 0.0 2.8e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Bac_globin PF01152.21 gi|389847209|ref|YP_006349448.1| - 1.1e-24 86.8 0.0 1.3e-24 86.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|389847209|ref|YP_006349448.1| - 0.00072 19.5 0.4 0.0056 16.6 0.1 1.9 1 1 1 2 2 2 1 Protoglobin TFIIB PF00382.19 gi|389847211|ref|YP_006349450.1| - 1.1e-05 25.3 0.3 1.8e-05 24.7 0.3 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|389847211|ref|YP_006349450.1| - 0.024 14.1 0.1 0.04 13.4 0.1 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 CTP_transf_like PF01467.26 gi|389847212|ref|YP_006349451.1| - 2.1e-12 47.5 0.0 2.8e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|389847212|ref|YP_006349451.1| - 0.0014 18.6 0.3 0.024 14.5 0.3 2.2 1 1 0 1 1 1 1 FAD synthetase HTH_19 PF12844.7 gi|389847212|ref|YP_006349451.1| - 0.14 12.2 0.1 0.56 10.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|389847213|ref|YP_006349452.1| - 2.2e-06 27.1 0.0 3.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389847213|ref|YP_006349452.1| - 2.3e-06 27.4 0.2 3.3e-06 26.9 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|389847213|ref|YP_006349452.1| - 0.00018 21.1 0.1 0.0004 20.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|389847213|ref|YP_006349452.1| - 0.0013 18.7 0.2 0.0026 17.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389847213|ref|YP_006349452.1| - 0.0028 17.4 0.1 0.0044 16.8 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389847213|ref|YP_006349452.1| - 0.0036 17.1 0.0 0.0046 16.8 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|389847213|ref|YP_006349452.1| - 0.0076 16.1 0.1 0.016 15.1 0.1 1.6 1 0 0 1 1 1 1 MarR family Replic_Relax PF13814.6 gi|389847213|ref|YP_006349452.1| - 0.0084 16.2 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_DeoR PF08220.12 gi|389847213|ref|YP_006349452.1| - 0.02 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|389847213|ref|YP_006349452.1| - 0.026 14.8 0.0 0.042 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF3369 PF11849.8 gi|389847213|ref|YP_006349452.1| - 0.063 13.5 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3369) HTH_Crp_2 PF13545.6 gi|389847213|ref|YP_006349452.1| - 0.069 13.1 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GCS2 PF04107.13 gi|389847214|ref|YP_006349453.1| - 9.4e-73 245.1 0.1 1.1e-72 244.9 0.1 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|389847214|ref|YP_006349453.1| - 0.055 13.1 1.2 6.7 6.3 0.0 2.8 2 1 1 3 3 3 0 Putative amidoligase enzyme Fibrillarin PF01269.17 gi|389847215|ref|YP_006349454.1| - 3.2e-53 180.2 0.0 3.8e-53 179.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.18 gi|389847216|ref|YP_006349455.1| - 1.3e-39 136.1 0.0 1.7e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Flg_hook PF02120.16 gi|389847217|ref|YP_006349456.1| - 0.04 13.8 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK CorA PF01544.18 gi|389847220|ref|YP_006349459.1| - 6.7e-67 225.8 0.1 7.9e-67 225.6 0.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein YiaAB PF05360.14 gi|389847220|ref|YP_006349459.1| - 0.26 11.6 1.6 0.74 10.1 1.6 1.8 1 1 0 1 1 1 0 yiaA/B two helix domain TFIIB PF00382.19 gi|389847221|ref|YP_006349460.1| - 1e-38 131.2 0.1 1.8e-18 66.3 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|389847221|ref|YP_006349460.1| - 4e-16 58.3 3.0 7.2e-16 57.4 3.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|389847221|ref|YP_006349460.1| - 0.00036 20.1 3.4 0.00054 19.6 3.4 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|389847221|ref|YP_006349460.1| - 0.0013 18.8 0.0 0.76 9.9 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain A2L_zn_ribbon PF08792.10 gi|389847221|ref|YP_006349460.1| - 0.003 17.2 2.1 0.0054 16.4 2.1 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|389847221|ref|YP_006349460.1| - 0.017 14.7 4.9 0.03 13.8 0.0 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|389847221|ref|YP_006349460.1| - 0.018 14.9 1.0 0.04 13.9 1.0 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|389847221|ref|YP_006349460.1| - 0.02 14.9 0.9 0.036 14.1 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon Cyclin_N PF00134.23 gi|389847221|ref|YP_006349460.1| - 0.048 13.4 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Cyclin, N-terminal domain zf-ribbon_3 PF13248.6 gi|389847221|ref|YP_006349460.1| - 0.055 12.9 3.0 0.35 10.3 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|389847221|ref|YP_006349460.1| - 0.082 13.0 5.3 0.26 11.4 0.7 2.4 1 1 2 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|389847221|ref|YP_006349460.1| - 0.095 12.9 1.9 0.17 12.1 1.9 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ADK_lid PF05191.14 gi|389847221|ref|YP_006349460.1| - 0.1 12.6 1.6 0.33 10.9 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF1272 PF06906.11 gi|389847221|ref|YP_006349460.1| - 0.14 12.3 2.1 0.17 12.0 0.1 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) Nudix_N_2 PF14803.6 gi|389847221|ref|YP_006349460.1| - 0.45 10.5 3.2 1.7 8.6 3.2 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-C4_Topoisom PF01396.19 gi|389847221|ref|YP_006349460.1| - 1.2 9.0 3.9 0.26 11.1 0.3 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_9 PF14369.6 gi|389847221|ref|YP_006349460.1| - 4.7 7.6 6.0 0.95 9.8 1.6 2.0 1 1 1 2 2 2 0 zinc-ribbon DUF2752 PF10825.8 gi|389847222|ref|YP_006349461.1| - 0.0014 18.6 0.4 0.073 13.1 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2752) zinc_ribbon_4 PF13717.6 gi|389847222|ref|YP_006349461.1| - 0.013 15.4 0.1 0.019 14.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389847222|ref|YP_006349461.1| - 0.014 14.9 3.1 0.033 13.7 2.8 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|389847222|ref|YP_006349461.1| - 0.033 14.2 0.2 0.033 14.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|389847222|ref|YP_006349461.1| - 0.036 14.0 0.8 0.051 13.5 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|389847222|ref|YP_006349461.1| - 0.048 13.6 1.3 0.08 12.9 0.9 1.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|389847222|ref|YP_006349461.1| - 0.071 13.1 1.3 0.13 12.2 0.2 1.8 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_4 PF13894.6 gi|389847222|ref|YP_006349461.1| - 0.093 13.6 0.3 2.3 9.3 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Mss51 PF13824.6 gi|389847222|ref|YP_006349461.1| - 0.14 12.3 2.5 1.2 9.3 3.4 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HalOD2 PF18547.1 gi|389847222|ref|YP_006349461.1| - 0.15 12.0 4.5 6.8 6.7 4.5 2.1 1 1 0 1 1 1 0 Halobacterial output domain 2 Rubredoxin_2 PF18073.1 gi|389847222|ref|YP_006349461.1| - 1.1 9.0 5.7 10 5.9 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf_UBZ PF18439.1 gi|389847222|ref|YP_006349461.1| - 2.7 7.7 6.7 1.3 8.7 1.2 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger eIF-5_eIF-2B PF01873.17 gi|389847223|ref|YP_006349462.1| - 3.2e-36 123.8 0.0 3.7e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 RecR PF02132.15 gi|389847223|ref|YP_006349462.1| - 0.019 14.5 0.2 0.21 11.2 0.4 2.2 1 1 1 2 2 2 0 RecR protein zf-ribbon_3 PF13248.6 gi|389847223|ref|YP_006349462.1| - 0.03 13.7 0.6 6.5 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389847223|ref|YP_006349462.1| - 0.091 12.3 0.5 0.19 11.3 0.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|389847223|ref|YP_006349462.1| - 0.11 12.5 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|389847223|ref|YP_006349462.1| - 0.15 12.5 0.1 0.31 11.4 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.6 gi|389847223|ref|YP_006349462.1| - 0.28 11.1 3.4 10 6.1 0.1 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 UPF0058 PF01893.16 gi|389847224|ref|YP_006349463.1| - 5.8e-21 74.6 0.1 6.3e-21 74.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.12 gi|389847225|ref|YP_006349464.1| - 7e-36 122.6 0.5 8.4e-36 122.3 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) HhH-GPD PF00730.25 gi|389847226|ref|YP_006349465.1| - 8.7e-14 51.9 0.0 1.3e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|389847226|ref|YP_006349465.1| - 6.7e-07 29.4 0.0 2.2e-06 27.8 0.0 1.8 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain Glyco_hydro_77 PF02446.17 gi|662859481|ref|YP_006349466.2| - 5.8e-148 493.6 0.2 7.1e-148 493.3 0.2 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase tRNA-synt_2b PF00587.25 gi|389847228|ref|YP_006349467.1| - 6.1e-32 111.0 0.0 1.3e-31 110.0 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|389847228|ref|YP_006349467.1| - 4.2e-18 65.3 0.3 8.9e-18 64.2 0.3 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|389847228|ref|YP_006349467.1| - 2e-13 50.2 0.0 4.1e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|389847228|ref|YP_006349467.1| - 5.8e-13 48.7 0.4 1.6e-12 47.3 0.1 1.9 2 0 0 2 2 2 1 TGS domain DUF2048 PF09752.9 gi|389847229|ref|YP_006349468.1| - 7.4e-05 22.0 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 Abhydrolase domain containing 18 ABC_tran_CTD PF16326.5 gi|389847229|ref|YP_006349468.1| - 0.11 12.8 0.1 0.26 11.5 0.1 1.6 1 0 0 1 1 1 0 ABC transporter C-terminal domain Abhydrolase_1 PF00561.20 gi|389847229|ref|YP_006349468.1| - 0.16 11.6 0.1 0.86 9.2 0.1 2.1 2 1 0 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389847229|ref|YP_006349468.1| - 0.87 10.1 26.6 0.037 14.6 13.5 3.0 2 2 0 2 2 2 0 Alpha/beta hydrolase family DUF2267 PF10025.9 gi|389847230|ref|YP_006349469.1| - 3.3e-33 114.6 0.5 4e-33 114.3 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Acetyltransf_3 PF13302.7 gi|389847233|ref|YP_006349472.1| - 1.1e-22 81.2 0.0 1.3e-22 80.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389847233|ref|YP_006349472.1| - 4.8e-10 39.7 0.0 6.8e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|389847233|ref|YP_006349472.1| - 8.8e-06 25.9 0.0 1.1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|389847233|ref|YP_006349472.1| - 2.8e-05 23.8 0.0 0.00022 20.9 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Endonuc-FokI_C PF09254.11 gi|389847233|ref|YP_006349472.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease FokI, C terminal TrkA_N PF02254.18 gi|662859482|ref|YP_006349473.2| - 4.6e-19 68.8 3.1 5.3e-19 68.6 1.7 1.9 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.20 gi|662859482|ref|YP_006349473.2| - 1.7e-13 50.7 0.4 7.7e-12 45.3 0.1 2.3 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|662859482|ref|YP_006349473.2| - 1.5e-07 31.9 0.5 1e-06 29.2 0.0 2.4 2 1 0 3 3 3 1 DHHA1 domain F420_oxidored PF03807.17 gi|662859482|ref|YP_006349473.2| - 1.6e-07 31.8 0.3 5.8e-07 30.0 0.2 2.1 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|662859482|ref|YP_006349473.2| - 5.6e-07 29.9 0.5 2.1e-06 28.0 0.3 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|662859482|ref|YP_006349473.2| - 7.9e-07 28.8 0.0 4e-05 23.3 0.0 2.4 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|662859482|ref|YP_006349473.2| - 6.2e-06 25.9 0.2 1.2e-05 24.9 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|662859482|ref|YP_006349473.2| - 0.00027 21.1 0.0 0.00055 20.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|662859482|ref|YP_006349473.2| - 0.00069 19.7 0.0 0.0017 18.5 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|662859482|ref|YP_006349473.2| - 0.00069 19.2 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|662859482|ref|YP_006349473.2| - 0.00082 19.8 1.3 0.0021 18.5 0.9 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|662859482|ref|YP_006349473.2| - 0.0012 18.9 0.0 0.0023 17.9 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.21 gi|662859482|ref|YP_006349473.2| - 0.0014 18.2 0.1 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|662859482|ref|YP_006349473.2| - 0.007 16.3 0.1 0.015 15.2 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|662859482|ref|YP_006349473.2| - 0.0091 15.4 0.0 0.023 14.1 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|662859482|ref|YP_006349473.2| - 0.012 14.9 0.7 0.026 13.8 0.7 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|662859482|ref|YP_006349473.2| - 0.039 13.2 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 gi|662859482|ref|YP_006349473.2| - 0.068 13.4 0.0 0.18 12.0 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain adh_short PF00106.25 gi|662859482|ref|YP_006349473.2| - 0.086 12.3 0.5 0.19 11.1 0.1 1.8 2 0 0 2 2 2 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|662859482|ref|YP_006349473.2| - 0.21 11.1 2.7 0.54 9.8 0.8 2.2 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase PRC PF05239.16 gi|389847235|ref|YP_006349474.1| - 1.4e-13 50.7 0.7 1.8e-13 50.3 0.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|389847235|ref|YP_006349474.1| - 0.027 14.8 0.2 0.077 13.3 0.2 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) RcnB PF11776.8 gi|389847235|ref|YP_006349474.1| - 0.07 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator LUD_dom PF02589.15 gi|389847236|ref|YP_006349475.1| - 1e-43 149.3 0.1 1.6e-43 148.6 0.1 1.3 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|389847236|ref|YP_006349475.1| - 1.7e-08 34.7 3.6 4.1e-08 33.5 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389847236|ref|YP_006349475.1| - 6.3e-08 32.6 3.3 0.00036 20.6 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389847236|ref|YP_006349475.1| - 1.3e-06 28.5 3.9 3.1e-06 27.2 3.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|389847236|ref|YP_006349475.1| - 1.6e-06 28.5 2.3 3.5e-06 27.5 2.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389847236|ref|YP_006349475.1| - 4.7e-06 27.1 4.6 1.3e-05 25.7 4.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389847236|ref|YP_006349475.1| - 0.00024 20.8 13.5 0.0013 18.4 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|389847236|ref|YP_006349475.1| - 0.00042 20.2 15.3 0.0055 16.7 4.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389847236|ref|YP_006349475.1| - 0.0008 19.4 12.3 0.0017 18.3 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389847236|ref|YP_006349475.1| - 0.0018 18.5 2.1 0.38 11.0 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389847236|ref|YP_006349475.1| - 0.0018 19.2 4.2 0.17 12.9 0.5 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|389847236|ref|YP_006349475.1| - 0.0045 17.1 11.8 0.047 13.8 11.8 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|389847236|ref|YP_006349475.1| - 0.055 14.3 0.8 0.055 14.3 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|389847236|ref|YP_006349475.1| - 0.057 13.2 0.2 0.057 13.2 0.2 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Response_reg PF00072.24 gi|389847236|ref|YP_006349475.1| - 0.12 12.5 1.3 18 5.5 1.1 3.1 3 0 0 3 3 3 0 Response regulator receiver domain Fer4_3 PF12798.7 gi|389847236|ref|YP_006349475.1| - 0.23 12.5 17.3 0.25 12.4 4.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|389847236|ref|YP_006349475.1| - 0.35 11.5 13.2 0.12 12.9 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|389847236|ref|YP_006349475.1| - 1.5 9.6 6.4 0.54 11.0 0.3 3.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain LUD_dom PF02589.15 gi|389847237|ref|YP_006349476.1| - 1.3e-13 51.1 0.0 1.8e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 LUD domain AIRS_C PF02769.22 gi|389847237|ref|YP_006349476.1| - 0.026 14.6 0.0 0.061 13.5 0.0 1.9 1 1 0 1 1 1 0 AIR synthase related protein, C-terminal domain HTH_20 PF12840.7 gi|389847239|ref|YP_006349478.1| - 1.7e-05 24.8 0.3 3.1e-05 23.9 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|389847239|ref|YP_006349478.1| - 3.9e-05 23.5 0.0 6.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|389847239|ref|YP_006349478.1| - 0.0083 15.9 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_17 PF12728.7 gi|389847239|ref|YP_006349478.1| - 0.009 16.2 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389847239|ref|YP_006349478.1| - 0.02 14.7 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|389847239|ref|YP_006349478.1| - 0.035 13.8 0.1 0.057 13.2 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|389847239|ref|YP_006349478.1| - 0.053 13.4 0.2 0.16 11.9 0.3 1.7 2 0 0 2 2 2 0 MarR family Lactate_perm PF02652.14 gi|389847240|ref|YP_006349479.1| - 3.1e-102 343.0 40.2 5.6e-102 342.1 40.2 1.4 1 1 0 1 1 1 1 L-lactate permease FAD-oxidase_C PF02913.19 gi|389847241|ref|YP_006349480.1| - 5e-65 219.6 0.4 1e-64 218.6 0.2 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|389847241|ref|YP_006349480.1| - 5.7e-41 139.5 0.1 1.5e-40 138.2 0.1 1.8 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|389847241|ref|YP_006349480.1| - 2.5e-09 37.5 3.0 5e-09 36.6 3.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|389847241|ref|YP_006349480.1| - 3.2e-09 37.1 4.2 7e-09 36.0 4.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|389847241|ref|YP_006349480.1| - 3.1e-06 27.3 0.0 7.5e-05 22.9 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|389847241|ref|YP_006349480.1| - 0.0004 20.4 2.9 0.014 15.5 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389847241|ref|YP_006349480.1| - 0.0017 18.5 2.4 0.044 14.0 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|389847241|ref|YP_006349480.1| - 0.014 14.8 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.6 gi|389847241|ref|YP_006349480.1| - 0.65 10.2 8.2 0.085 13.0 0.4 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389847241|ref|YP_006349480.1| - 1.7 9.3 7.9 24 5.6 8.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389847241|ref|YP_006349480.1| - 3.4 7.7 14.5 0.82 9.6 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389847241|ref|YP_006349480.1| - 5.2 7.3 9.9 2.7 8.2 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Aminotran_1_2 PF00155.21 gi|389847242|ref|YP_006349481.1| - 3.4e-27 95.6 0.0 1e-26 94.0 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II DUF123 PF01986.16 gi|389847243|ref|YP_006349482.1| - 2.3e-30 105.0 0.0 3.1e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF393 PF04134.12 gi|389847244|ref|YP_006349483.1| - 1.8e-06 29.3 0.0 2.5e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Thioredoxin_2 PF13098.6 gi|389847244|ref|YP_006349483.1| - 0.19 12.2 0.0 0.3 11.5 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain DEAD PF00270.29 gi|389847245|ref|YP_006349484.1| - 1e-23 84.0 0.0 1.5e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|389847245|ref|YP_006349484.1| - 1.2e-21 77.2 0.1 4e-21 75.6 0.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|389847245|ref|YP_006349484.1| - 2.5e-10 40.7 0.0 7.7e-10 39.1 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain RGP PF03214.13 gi|389847246|ref|YP_006349485.1| - 1.1e-16 61.0 0.0 1.4e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_6 PF13343.6 gi|389847247|ref|YP_006349486.1| - 1.2e-14 54.3 0.0 1.6e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389847247|ref|YP_006349486.1| - 3.9e-10 39.9 0.8 4.9e-09 36.3 0.8 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|389847247|ref|YP_006349486.1| - 6e-09 36.1 0.1 8.5e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389847247|ref|YP_006349486.1| - 6.7e-06 26.3 0.9 2.5e-05 24.4 0.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|389847248|ref|YP_006349487.1| - 4.1e-27 95.1 40.9 2.4e-14 53.5 16.4 4.2 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|389847249|ref|YP_006349488.1| - 8.5e-33 113.8 0.0 1.4e-32 113.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389847249|ref|YP_006349488.1| - 5e-08 33.0 0.1 5e-08 33.0 0.1 2.4 4 0 0 4 4 4 1 TOBE domain AAA_21 PF13304.6 gi|389847249|ref|YP_006349488.1| - 2e-05 24.6 0.5 0.082 12.7 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|389847249|ref|YP_006349488.1| - 0.00089 19.2 0.0 0.002 18.1 0.0 1.5 2 0 0 2 2 2 1 Rad17 P-loop domain AAA PF00004.29 gi|389847249|ref|YP_006349488.1| - 0.0024 18.3 0.0 0.015 15.7 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|389847249|ref|YP_006349488.1| - 0.0031 17.9 0.2 0.0066 16.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|389847249|ref|YP_006349488.1| - 0.0036 17.6 0.2 0.0093 16.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389847249|ref|YP_006349488.1| - 0.0097 16.1 0.0 0.018 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389847249|ref|YP_006349488.1| - 0.021 14.8 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|389847249|ref|YP_006349488.1| - 0.062 13.5 0.3 0.33 11.2 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|389847249|ref|YP_006349488.1| - 0.078 12.7 0.1 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|389847249|ref|YP_006349488.1| - 0.11 12.7 0.1 0.7 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain PMT_2 PF13231.6 gi|389847250|ref|YP_006349489.1| - 5.6e-09 36.4 13.3 5.6e-09 36.4 13.3 2.3 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DoxX PF07681.12 gi|389847252|ref|YP_006349491.1| - 4.9e-05 23.8 3.6 8.3e-05 23.1 3.6 1.3 1 0 0 1 1 1 1 DoxX DoxX_3 PF13781.6 gi|389847252|ref|YP_006349491.1| - 0.00043 20.9 4.2 0.00043 20.9 4.2 2.3 2 1 1 3 3 3 1 DoxX-like family DoxX_2 PF13564.6 gi|389847252|ref|YP_006349491.1| - 0.0013 18.8 4.0 0.0023 18.0 4.0 1.4 1 0 0 1 1 1 1 DoxX-like family DUF4267 PF14087.6 gi|389847252|ref|YP_006349491.1| - 0.075 13.1 2.9 0.12 12.4 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4267) DUF3784 PF12650.7 gi|389847252|ref|YP_006349491.1| - 0.67 10.2 4.1 4.5 7.5 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3784) GHL5 PF14872.6 gi|389847253|ref|YP_006349492.1| - 4.7e-224 746.0 0.1 1.4e-219 731.2 0.0 3.5 1 1 1 2 2 2 2 Hypothetical glycoside hydrolase 5 Alpha-amylase PF00128.24 gi|662859483|ref|YP_006349493.2| - 2.7e-47 162.0 0.5 4e-32 112.1 0.5 2.2 1 1 1 2 2 2 2 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|662859483|ref|YP_006349493.2| - 3.8e-06 27.1 0.0 9.4e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) hDGE_amylase PF14701.6 gi|662859483|ref|YP_006349493.2| - 0.0031 16.7 0.0 0.0077 15.4 0.0 1.5 2 0 0 2 2 2 1 Glycogen debranching enzyme, glucanotransferase domain PKD PF00801.20 gi|662859483|ref|YP_006349493.2| - 0.046 13.6 0.0 0.25 11.2 0.0 2.3 2 0 0 2 2 2 0 PKD domain AP_endonuc_2 PF01261.24 gi|662859483|ref|YP_006349493.2| - 0.084 12.3 1.2 0.73 9.2 0.0 2.9 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|662859483|ref|YP_006349493.2| - 0.099 13.0 0.0 0.86 10.0 0.0 2.4 2 0 0 2 2 2 0 Radical SAM superfamily Malt_amylase_C PF16657.5 gi|662859483|ref|YP_006349493.2| - 0.11 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain Glucodextran_N PF09137.11 gi|389847255|ref|YP_006349494.1| - 3.3e-75 253.1 0.3 3.3e-75 253.1 0.3 2.8 4 0 0 4 4 4 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.21 gi|389847255|ref|YP_006349494.1| - 1.6e-28 99.7 0.0 1.5e-22 80.1 0.0 3.7 3 1 0 3 3 3 2 Glycosyl hydrolases family 15 Glucodextran_B PF09136.10 gi|389847255|ref|YP_006349494.1| - 0.014 15.8 3.1 0.063 13.7 3.1 2.2 1 0 0 1 1 1 0 Glucodextranase, domain B Polyketide_cyc PF03364.20 gi|389847256|ref|YP_006349495.1| - 1.2e-09 38.4 0.0 1.8e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|389847256|ref|YP_006349495.1| - 2.6e-07 31.0 0.6 2.9e-07 30.8 0.6 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Response_reg PF00072.24 gi|389847257|ref|YP_006349496.1| - 9.6e-22 77.3 0.0 2.1e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|389847257|ref|YP_006349496.1| - 2.1e-15 57.2 0.3 1e-14 55.0 0.1 2.3 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389847257|ref|YP_006349496.1| - 1.8e-14 53.5 0.2 4.6e-14 52.2 0.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|389847257|ref|YP_006349496.1| - 8.1e-07 29.4 0.0 6.3e-06 26.6 0.0 2.5 2 1 1 3 3 3 1 GAF domain PAS_4 PF08448.10 gi|389847257|ref|YP_006349496.1| - 1.6e-06 28.3 0.1 4.6e-06 26.9 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|389847257|ref|YP_006349496.1| - 3.4e-05 23.8 0.0 7.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|389847257|ref|YP_006349496.1| - 8.5e-05 22.8 0.0 0.00026 21.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain GAF PF01590.26 gi|389847257|ref|YP_006349496.1| - 0.00012 22.7 0.0 0.00036 21.2 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|389847257|ref|YP_006349496.1| - 0.0017 18.3 0.3 0.0065 16.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|389847257|ref|YP_006349496.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain EamA PF00892.20 gi|389847258|ref|YP_006349497.1| - 5.4e-27 94.6 31.7 3.2e-14 53.3 12.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|389847258|ref|YP_006349497.1| - 0.00023 20.8 1.2 0.00023 20.8 1.2 1.6 2 1 0 2 2 2 1 Solute carrier family 35 Pyr_redox_2 PF07992.14 gi|389847259|ref|YP_006349498.1| - 1.4e-22 80.3 9.3 2.3e-12 46.8 1.0 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389847259|ref|YP_006349498.1| - 3.8e-10 39.5 2.0 1.8e-05 24.1 0.2 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|389847259|ref|YP_006349498.1| - 8.7e-10 38.8 0.7 1.6e-06 28.2 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.24 gi|389847259|ref|YP_006349498.1| - 2.4e-09 37.3 4.2 0.00051 19.7 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389847259|ref|YP_006349498.1| - 5e-09 35.3 0.2 6.4e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|389847259|ref|YP_006349498.1| - 7.1e-09 35.2 1.8 8.8e-05 21.8 0.3 2.3 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|389847259|ref|YP_006349498.1| - 1.5e-06 27.5 3.2 2.1e-06 27.1 1.0 2.0 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|389847259|ref|YP_006349498.1| - 1.9e-06 28.0 0.1 5e-06 26.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|389847259|ref|YP_006349498.1| - 3.7e-06 26.4 3.1 0.0019 17.5 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|389847259|ref|YP_006349498.1| - 3e-05 23.3 1.1 0.066 12.2 0.2 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|389847259|ref|YP_006349498.1| - 4.3e-05 22.9 0.2 7.3e-05 22.2 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|389847259|ref|YP_006349498.1| - 0.00061 18.8 3.1 0.065 12.1 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|389847259|ref|YP_006349498.1| - 0.00094 18.5 0.7 0.0021 17.3 0.2 1.8 1 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|389847259|ref|YP_006349498.1| - 0.0022 17.4 4.7 0.0024 17.3 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|389847259|ref|YP_006349498.1| - 0.0023 17.3 0.3 0.009 15.3 0.1 1.8 1 1 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|389847259|ref|YP_006349498.1| - 0.0024 18.4 1.4 0.02 15.4 0.9 2.5 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|389847259|ref|YP_006349498.1| - 0.0025 17.7 0.3 0.0043 17.0 0.1 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389847259|ref|YP_006349498.1| - 0.045 14.2 0.3 0.07 13.6 0.2 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding Methyltransf_11 PF08241.12 gi|389847260|ref|YP_006349499.1| - 6.3e-23 81.3 0.1 1.4e-22 80.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389847260|ref|YP_006349499.1| - 2.9e-18 66.3 0.0 4.7e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389847260|ref|YP_006349499.1| - 3.7e-18 66.0 0.1 8.1e-18 64.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389847260|ref|YP_006349499.1| - 2.8e-11 43.4 0.0 5.8e-11 42.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389847260|ref|YP_006349499.1| - 1.1e-08 35.7 0.0 4e-08 33.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389847260|ref|YP_006349499.1| - 3.3e-08 33.2 0.0 5.2e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|389847260|ref|YP_006349499.1| - 0.005 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase Hydrolase PF00702.26 gi|389847260|ref|YP_006349499.1| - 0.0063 16.8 0.2 0.01 16.1 0.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Methyltransf_29 PF03141.16 gi|389847260|ref|YP_006349499.1| - 0.01 14.5 0.0 0.013 14.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Met_10 PF02475.16 gi|389847260|ref|YP_006349499.1| - 0.059 13.1 0.0 0.079 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein MetW PF07021.12 gi|389847260|ref|YP_006349499.1| - 0.11 12.0 0.0 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW QueC PF06508.13 gi|389847261|ref|YP_006349500.1| - 1e-73 247.3 0.0 1.2e-73 247.1 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|389847261|ref|YP_006349500.1| - 1.3e-06 28.1 0.0 2.3e-06 27.3 0.0 1.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|389847261|ref|YP_006349500.1| - 3.2e-05 22.9 0.0 4.3e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|389847261|ref|YP_006349500.1| - 0.00058 19.1 0.0 0.00094 18.4 0.0 1.3 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|389847261|ref|YP_006349500.1| - 0.0013 18.5 0.1 0.0016 18.1 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase Radical_SAM PF04055.21 gi|389847262|ref|YP_006349501.1| - 1.3e-22 80.9 0.6 3e-22 79.8 0.6 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|389847262|ref|YP_006349501.1| - 2e-13 50.5 0.0 3.5e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|389847262|ref|YP_006349501.1| - 2.5e-06 27.8 0.0 4.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|389847263|ref|YP_006349502.1| - 2.2e-22 79.3 0.0 2.8e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase 4HBT PF03061.22 gi|389847264|ref|YP_006349503.1| - 8.8e-11 42.0 0.8 1.5e-10 41.3 0.1 1.7 2 0 0 2 2 2 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|389847264|ref|YP_006349503.1| - 2.4e-09 37.7 0.0 3.2e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|389847264|ref|YP_006349503.1| - 1.1e-05 24.9 0.1 0.00012 21.4 0.1 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase ERCC3_RAD25_C PF16203.5 gi|389847266|ref|YP_006349505.1| - 2e-24 86.2 0.0 3.3e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|389847266|ref|YP_006349505.1| - 2.5e-16 60.1 0.0 4.5e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|389847266|ref|YP_006349505.1| - 6.5e-12 44.8 0.0 9.1e-12 44.4 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|389847266|ref|YP_006349505.1| - 5e-11 42.9 0.0 1.4e-10 41.5 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|389847266|ref|YP_006349505.1| - 2.6e-07 30.6 0.0 4.7e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|389847266|ref|YP_006349505.1| - 4.3e-05 22.9 0.0 0.0093 15.2 0.0 2.3 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|389847266|ref|YP_006349505.1| - 0.00045 20.0 0.0 0.0024 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain MarR_2 PF12802.7 gi|389847266|ref|YP_006349505.1| - 0.0051 16.7 0.2 0.014 15.2 0.2 1.8 1 0 0 1 1 1 1 MarR family AAA_22 PF13401.6 gi|389847266|ref|YP_006349505.1| - 0.012 15.9 0.0 2.3 8.5 0.0 2.8 2 0 0 2 2 2 0 AAA domain Flavi_DEAD PF07652.14 gi|389847266|ref|YP_006349505.1| - 0.031 14.3 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain TrmB PF01978.19 gi|389847266|ref|YP_006349505.1| - 0.033 14.1 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389847266|ref|YP_006349505.1| - 0.12 12.4 0.0 0.35 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.8 gi|389847266|ref|YP_006349505.1| - 0.13 12.3 0.0 0.43 10.7 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|389847266|ref|YP_006349505.1| - 0.14 12.3 0.0 0.5 10.6 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Cdc6_C PF09079.11 gi|389847268|ref|YP_006349507.1| - 1.2e-20 73.3 0.1 3.5e-20 71.8 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389847268|ref|YP_006349507.1| - 4.5e-15 56.1 0.2 2.4e-14 53.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389847268|ref|YP_006349507.1| - 7.6e-10 39.4 2.7 1.1e-09 38.9 0.3 2.4 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389847268|ref|YP_006349507.1| - 4.5e-06 27.1 0.2 1.7e-05 25.2 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|389847268|ref|YP_006349507.1| - 6.7e-06 26.2 0.0 2.3e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|389847268|ref|YP_006349507.1| - 7.7e-06 25.7 0.0 1.9e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|389847268|ref|YP_006349507.1| - 0.0001 22.3 0.0 0.00021 21.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|389847268|ref|YP_006349507.1| - 0.00027 21.1 0.0 0.0021 18.2 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|389847268|ref|YP_006349507.1| - 0.0011 18.2 0.0 0.0021 17.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|389847268|ref|YP_006349507.1| - 0.0012 19.0 0.0 0.002 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TniB PF05621.11 gi|389847268|ref|YP_006349507.1| - 0.0017 17.8 0.0 0.0039 16.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial TniB protein DEAD PF00270.29 gi|389847268|ref|YP_006349507.1| - 0.0024 17.7 1.4 0.32 10.7 1.4 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|389847268|ref|YP_006349507.1| - 0.0031 17.9 0.0 0.0064 16.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.21 gi|389847268|ref|YP_006349507.1| - 0.013 14.8 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|389847268|ref|YP_006349507.1| - 0.014 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|389847268|ref|YP_006349507.1| - 0.018 14.8 0.1 0.033 13.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|389847268|ref|YP_006349507.1| - 0.026 13.8 0.8 0.33 10.2 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain PhoH PF02562.16 gi|389847268|ref|YP_006349507.1| - 0.028 13.9 1.5 6.2 6.2 0.0 2.8 2 1 1 3 3 3 0 PhoH-like protein IstB_IS21 PF01695.17 gi|389847268|ref|YP_006349507.1| - 0.041 13.6 0.6 1.1 9.0 0.0 2.4 1 1 0 2 2 2 0 IstB-like ATP binding protein AAA_assoc_2 PF16193.5 gi|389847268|ref|YP_006349507.1| - 0.046 14.1 0.4 0.53 10.6 0.2 2.4 1 1 1 2 2 2 0 AAA C-terminal domain FtsK_SpoIIIE PF01580.18 gi|389847268|ref|YP_006349507.1| - 0.075 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.9 gi|389847268|ref|YP_006349507.1| - 0.077 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF87 PF01935.17 gi|389847268|ref|YP_006349507.1| - 0.086 12.9 0.3 0.21 11.7 0.0 1.7 2 0 0 2 2 1 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|389847268|ref|YP_006349507.1| - 0.091 13.3 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|389847268|ref|YP_006349507.1| - 0.14 11.1 0.0 0.25 10.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain HTH_Crp_2 PF13545.6 gi|389847269|ref|YP_006349508.1| - 0.0013 18.7 0.0 0.016 15.2 0.0 2.7 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|389847269|ref|YP_006349508.1| - 0.0022 17.8 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|389847269|ref|YP_006349508.1| - 0.0079 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|389847269|ref|YP_006349508.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Crp PF00325.20 gi|389847269|ref|YP_006349508.1| - 0.13 12.0 0.1 0.13 12.0 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family TBP PF00352.21 gi|389847270|ref|YP_006349509.1| - 1e-58 195.3 0.0 3.1e-28 97.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|389847270|ref|YP_006349509.1| - 3e-06 27.2 0.0 0.005 16.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|389847270|ref|YP_006349509.1| - 0.015 15.3 0.0 0.36 10.8 0.0 2.0 1 1 1 2 2 2 0 DUF218 domain bMG3 PF11974.8 gi|389848345|ref|YP_006350584.1| - 1.3e-07 31.6 17.7 0.00016 21.7 1.9 3.3 3 0 0 3 3 3 3 Bacterial alpha-2-macroglobulin MG3 domain YtkA PF13115.6 gi|389848345|ref|YP_006350584.1| - 2.6e-05 24.8 16.5 0.012 16.2 0.5 4.6 1 1 3 5 5 5 2 YtkA-like MG4 PF17789.1 gi|389848345|ref|YP_006350584.1| - 0.00038 20.5 15.9 0.0096 16.1 1.0 3.8 1 1 1 3 3 3 3 Macroglobulin domain MG4 DUF5640 PF18692.1 gi|389848345|ref|YP_006350584.1| - 0.012 15.6 1.1 3.8 7.6 0.1 3.0 1 1 0 3 3 3 0 Family of unknown function (DUF5640) Bile_Hydr_Trans PF04775.14 gi|389848345|ref|YP_006350584.1| - 0.012 15.6 5.7 5.1 7.2 0.0 3.6 2 1 1 3 3 3 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region NlpE PF04170.12 gi|389848345|ref|YP_006350584.1| - 0.027 15.4 2.6 6.3 7.8 0.1 3.3 2 1 0 3 3 3 0 NlpE N-terminal domain DUF1533 PF07550.11 gi|389848345|ref|YP_006350584.1| - 0.033 14.1 0.1 0.21 11.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1533) DUF4981 PF16353.5 gi|389848345|ref|YP_006350584.1| - 0.064 13.7 6.1 0.11 13.0 0.7 3.3 2 2 1 3 3 3 0 Domain of unknown function(DUF4981) DUF1939 PF09154.10 gi|389848345|ref|YP_006350584.1| - 0.094 12.9 4.9 7.9 6.7 0.1 4.0 4 1 1 5 5 5 0 Domain of unknown function (DUF1939) CBM_4_9 PF02018.17 gi|389848345|ref|YP_006350584.1| - 0.52 10.6 16.9 0.25 11.6 0.9 3.2 2 1 1 3 3 3 0 Carbohydrate binding domain DUF3244 PF11589.8 gi|389848345|ref|YP_006350584.1| - 2 8.6 15.6 16 5.7 0.3 4.4 3 1 0 4 4 4 0 Domain of unknown function (DUF3244) MMR_HSR1_C PF08438.10 gi|389848342|ref|YP_006350581.1| - 4.7e-30 104.4 0.0 8.8e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|389848342|ref|YP_006350581.1| - 3.6e-22 78.6 0.0 1.9e-19 69.8 0.0 2.8 2 1 1 3 3 3 2 50S ribosome-binding GTPase TGS PF02824.21 gi|389848342|ref|YP_006350581.1| - 8.1e-10 38.6 0.0 1.8e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|389848342|ref|YP_006350581.1| - 1.8e-05 24.3 0.0 0.00043 19.9 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|389848342|ref|YP_006350581.1| - 0.0078 15.8 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|389848342|ref|YP_006350581.1| - 0.0089 16.1 0.1 0.51 10.4 0.0 2.8 3 0 0 3 3 3 1 Dynamin family Roc PF08477.13 gi|389848342|ref|YP_006350581.1| - 0.044 14.0 0.1 0.8 9.9 0.0 2.6 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|389848342|ref|YP_006350581.1| - 0.068 12.8 0.1 12 5.5 0.1 2.3 2 0 0 2 2 2 0 Ras family NOG1 PF06858.14 gi|389848342|ref|YP_006350581.1| - 0.15 11.8 0.7 0.7 9.7 0.0 2.4 3 0 0 3 3 3 0 Nucleolar GTP-binding protein 1 (NOG1) Acetyltransf_4 PF13420.7 gi|389848340|ref|YP_006350579.1| - 3.5e-34 118.2 0.0 4.3e-34 117.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848340|ref|YP_006350579.1| - 5.6e-17 62.1 0.0 9.1e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389848340|ref|YP_006350579.1| - 8.8e-11 41.8 0.0 1.2e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848340|ref|YP_006350579.1| - 3e-09 37.2 0.0 4.4e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389848340|ref|YP_006350579.1| - 3.7e-09 37.4 0.0 7.5e-09 36.4 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848340|ref|YP_006350579.1| - 2e-07 30.8 0.0 3.3e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|389848340|ref|YP_006350579.1| - 7.9e-06 26.0 0.0 1.5e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389848340|ref|YP_006350579.1| - 0.0046 17.0 0.0 0.0082 16.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|389848340|ref|YP_006350579.1| - 0.067 12.8 0.0 0.096 12.2 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Amidohydro_1 PF01979.20 gi|389848339|ref|YP_006350578.1| - 6.1e-61 206.6 0.5 7.3e-61 206.4 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|389848339|ref|YP_006350578.1| - 6.6e-05 22.4 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_1 PF01979.20 gi|662859597|ref|YP_006350577.2| - 3.8e-53 181.0 4.1 4.4e-53 180.8 4.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|662859597|ref|YP_006350577.2| - 7e-20 71.9 13.3 7.7e-16 58.6 6.6 2.2 1 1 1 2 2 2 2 Amidohydrolase family MOSC_N PF03476.16 gi|389848336|ref|YP_006350575.1| - 9.1e-15 54.6 0.0 5.9e-14 52.0 0.0 2.1 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|389848336|ref|YP_006350575.1| - 1.4e-07 31.5 0.0 2.6e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 MOSC domain Proteasome PF00227.26 gi|389848335|ref|YP_006350574.1| - 1.7e-52 177.7 0.0 2.3e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|389848335|ref|YP_006350574.1| - 3.1e-12 45.9 1.1 5.4e-12 45.2 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF1508 PF07411.12 gi|389848334|ref|YP_006350573.1| - 6e-26 90.0 0.2 8e-26 89.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) DUF2914 PF11141.8 gi|389848334|ref|YP_006350573.1| - 0.019 14.7 0.0 0.1 12.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2914) DUF4177 PF13783.6 gi|389848333|ref|YP_006350572.1| - 6.9e-11 42.3 0.0 7.9e-11 42.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DHFR_1 PF00186.19 gi|389848332|ref|YP_006350571.1| - 8.4e-49 165.4 0.0 9.7e-49 165.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.19 gi|389848331|ref|YP_006350570.1| - 2.1e-92 309.1 0.0 2.6e-92 308.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Lactamase_B PF00753.27 gi|389848330|ref|YP_006350569.1| - 1e-18 68.1 7.9 5.8e-17 62.3 7.9 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389848330|ref|YP_006350569.1| - 0.00037 20.1 1.0 0.00053 19.6 1.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Sod_Fe_N PF00081.22 gi|389848327|ref|YP_006350566.1| - 1.2e-30 105.8 1.2 2e-30 105.1 1.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|389848327|ref|YP_006350566.1| - 8.9e-27 93.3 0.0 1.4e-26 92.6 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain DJ-1_PfpI PF01965.24 gi|389848326|ref|YP_006350565.1| - 5e-24 85.0 0.0 6.4e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|389848326|ref|YP_006350565.1| - 0.00025 20.7 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain FAD_binding_7 PF03441.14 gi|389848325|ref|YP_006350564.1| - 6.1e-80 267.5 2.3 6.1e-80 267.5 2.3 1.5 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|389848325|ref|YP_006350564.1| - 2.9e-44 151.0 0.0 6.5e-44 149.8 0.0 1.6 1 0 0 1 1 1 1 DNA photolyase DnaJ_CXXCXGXG PF00684.19 gi|389848324|ref|YP_006350563.1| - 0.0095 16.3 0.3 0.016 15.6 0.3 1.2 1 0 0 1 1 1 1 DnaJ central domain MAF_flag10 PF01973.18 gi|389848323|ref|YP_006350562.1| - 5.9e-11 42.4 0.0 8e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 DUF4439 PF14530.6 gi|389848323|ref|YP_006350562.1| - 0.027 15.2 0.9 0.048 14.3 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4439) Pterin_bind PF00809.22 gi|389848322|ref|YP_006350561.1| - 1.8e-38 132.6 0.0 3.3e-38 131.7 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme SpoU_methylase PF00588.19 gi|389848320|ref|YP_006350559.1| - 8.6e-31 107.0 0.0 1.3e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family MaoC_dehydratas PF01575.19 gi|389848319|ref|YP_006350558.1| - 1.3e-15 57.1 0.0 1.7e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389848319|ref|YP_006350558.1| - 4.4e-05 23.6 0.1 7.6e-05 22.8 0.1 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase SUR7 PF06687.12 gi|389848318|ref|YP_006350557.1| - 3.4 7.2 8.2 7.7 6.1 8.2 1.7 1 1 0 1 1 1 0 SUR7/PalI family Peptidase_M48 PF01435.18 gi|662859594|ref|YP_006350556.2| - 3.2e-22 79.3 0.0 6.4e-21 75.0 0.0 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|662859594|ref|YP_006350556.2| - 3.1e-06 26.6 0.0 5.8e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 GatB_N PF02934.15 gi|389848316|ref|YP_006350555.1| - 3.8e-64 216.7 0.0 4.9e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|389848316|ref|YP_006350555.1| - 1.8e-24 86.3 0.1 3.3e-24 85.5 0.1 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|389848316|ref|YP_006350555.1| - 1.3e-14 54.2 0.0 3.3e-14 52.9 0.0 1.8 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|389848316|ref|YP_006350555.1| - 0.00036 20.6 0.3 0.00087 19.4 0.3 1.7 1 0 0 1 1 1 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.15 gi|389848316|ref|YP_006350555.1| - 0.04 13.9 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 DUF2999 PF11212.8 gi|389848316|ref|YP_006350555.1| - 0.043 14.1 0.0 0.17 12.2 0.0 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) Lyase_1 PF00206.20 gi|662859593|ref|YP_006350554.2| - 1.5e-107 359.6 0.0 2.4e-107 359.0 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|662859593|ref|YP_006350554.2| - 8.8e-25 86.9 1.7 2.1e-24 85.7 0.3 2.4 2 0 0 2 2 2 1 Fumarase C C-terminus SBP_bac_8 PF13416.6 gi|389848314|ref|YP_006350553.1| - 1.5e-25 90.6 6.7 2.2e-25 90.1 6.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848314|ref|YP_006350553.1| - 6.7e-22 78.8 14.9 9.3e-22 78.4 14.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848314|ref|YP_006350553.1| - 2.8e-05 23.7 2.4 6.4e-05 22.6 2.4 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|389848313|ref|YP_006350552.1| - 1.2e-20 74.0 17.0 1.2e-20 74.0 17.0 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848312|ref|YP_006350551.1| - 3.1e-15 56.4 15.5 6e-15 55.5 15.5 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.16 gi|389848312|ref|YP_006350551.1| - 3 7.6 7.4 0.3 10.8 1.1 2.5 3 0 0 3 3 3 0 MotA/TolQ/ExbB proton channel family ABC_tran PF00005.27 gi|389848311|ref|YP_006350550.1| - 5e-31 108.1 0.0 8.4e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|389848311|ref|YP_006350550.1| - 8.5e-11 42.5 0.0 4.2e-10 40.3 0.0 2.3 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|389848311|ref|YP_006350550.1| - 1.8e-07 31.3 0.0 0.017 14.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|389848311|ref|YP_006350550.1| - 2.9e-07 30.9 0.1 5.7e-05 23.6 0.0 3.3 3 0 0 3 3 2 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|389848311|ref|YP_006350550.1| - 4.9e-07 29.8 1.0 1.6e-06 28.2 0.3 2.3 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.6 gi|389848311|ref|YP_006350550.1| - 0.00067 20.0 0.0 0.0028 17.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|389848311|ref|YP_006350550.1| - 0.001 18.5 0.1 0.14 11.6 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|389848311|ref|YP_006350550.1| - 0.0011 18.9 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain TOBE PF03459.17 gi|389848311|ref|YP_006350550.1| - 0.0032 17.7 0.1 0.01 16.1 0.1 1.9 1 0 0 1 1 1 1 TOBE domain AAA_16 PF13191.6 gi|389848311|ref|YP_006350550.1| - 0.0034 17.8 0.3 0.0081 16.6 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848311|ref|YP_006350550.1| - 0.0035 17.3 0.1 0.0073 16.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|389848311|ref|YP_006350550.1| - 0.0064 16.1 0.0 0.53 9.8 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|389848311|ref|YP_006350550.1| - 0.027 14.2 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|389848311|ref|YP_006350550.1| - 0.037 13.7 0.1 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|389848311|ref|YP_006350550.1| - 0.038 14.4 0.0 0.17 12.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|389848311|ref|YP_006350550.1| - 0.057 13.1 0.0 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|389848311|ref|YP_006350550.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|389848311|ref|YP_006350550.1| - 0.14 12.2 0.0 0.37 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) BolA PF01722.18 gi|389848310|ref|YP_006350549.1| - 3.5e-19 68.8 0.1 4.1e-19 68.6 0.1 1.1 1 0 0 1 1 1 1 BolA-like protein MCPsignal PF00015.21 gi|389848309|ref|YP_006350548.1| - 4.1e-42 143.9 47.0 4.4e-42 143.8 18.9 4.3 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|389848309|ref|YP_006350548.1| - 5.1e-11 42.8 12.2 1.1e-06 29.0 0.2 4.7 4 1 1 5 5 4 2 HAMP domain Phasin_2 PF09361.10 gi|389848309|ref|YP_006350548.1| - 0.0078 16.5 3.2 0.0078 16.5 3.2 4.2 2 1 0 3 3 3 2 Phasin protein Spc7 PF08317.11 gi|389848309|ref|YP_006350548.1| - 0.0081 15.1 20.7 0.21 10.4 4.0 2.5 2 0 0 2 2 2 2 Spc7 kinetochore protein DUF1664 PF07889.12 gi|389848309|ref|YP_006350548.1| - 0.011 15.8 22.7 0.62 10.1 3.5 4.7 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) SHE3 PF17078.5 gi|389848309|ref|YP_006350548.1| - 0.011 15.4 2.7 0.044 13.5 0.2 2.8 2 1 2 4 4 4 0 SWI5-dependent HO expression protein 3 BLOC1_2 PF10046.9 gi|389848309|ref|YP_006350548.1| - 0.018 15.4 23.8 6.8 7.1 0.5 5.7 1 1 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|389848309|ref|YP_006350548.1| - 0.018 14.0 8.4 0.28 10.1 0.0 2.8 2 1 0 3 3 3 0 Intra-flagellar transport protein 57 dCache_1 PF02743.18 gi|389848309|ref|YP_006350548.1| - 0.022 14.5 8.7 0.12 12.2 0.0 3.6 3 2 1 4 4 4 0 Cache domain RmuC PF02646.16 gi|389848309|ref|YP_006350548.1| - 0.035 13.3 12.8 0.085 12.0 0.4 4.1 2 2 1 5 5 5 0 RmuC family ApoLp-III PF07464.11 gi|389848309|ref|YP_006350548.1| - 0.044 13.9 24.2 0.11 12.6 11.4 3.5 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) DUF948 PF06103.11 gi|389848309|ref|YP_006350548.1| - 0.054 13.8 38.5 0.069 13.4 2.4 6.4 3 1 4 7 7 5 0 Bacterial protein of unknown function (DUF948) BAR_2 PF10455.9 gi|389848309|ref|YP_006350548.1| - 0.06 12.5 8.3 1.2 8.2 0.4 2.4 2 0 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking F_actin_bind PF08919.10 gi|389848309|ref|YP_006350548.1| - 0.098 12.8 1.0 3.8 7.6 0.0 3.7 2 2 1 3 3 3 0 F-actin binding ING PF12998.7 gi|389848309|ref|YP_006350548.1| - 0.14 12.8 4.4 12 6.6 0.0 3.5 2 2 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Baculo_PEP_C PF04513.12 gi|389848309|ref|YP_006350548.1| - 0.16 12.0 15.5 1 9.4 1.2 4.1 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Occludin_ELL PF07303.13 gi|389848309|ref|YP_006350548.1| - 0.25 12.1 2.0 27 5.5 0.1 4.1 2 2 2 4 4 4 0 Occludin homology domain ECM11 PF15463.6 gi|389848309|ref|YP_006350548.1| - 0.25 11.9 3.2 4.4 7.9 0.8 3.2 2 0 0 2 2 2 0 Extracellular mutant protein 11 Syntaxin PF00804.25 gi|389848309|ref|YP_006350548.1| - 0.26 10.9 13.2 0.14 11.8 3.0 3.6 2 2 2 4 4 4 0 Syntaxin Nup88 PF10168.9 gi|389848309|ref|YP_006350548.1| - 0.44 8.3 8.9 0.07 10.9 1.7 2.1 1 1 1 2 2 2 0 Nuclear pore component GldM_N PF12081.8 gi|389848309|ref|YP_006350548.1| - 0.49 10.5 21.4 3.2 7.8 1.0 4.2 1 1 3 4 4 4 0 GldM N-terminal domain Fib_alpha PF08702.10 gi|389848309|ref|YP_006350548.1| - 0.61 10.3 7.9 0.99 9.6 0.3 3.4 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Bacillus_HBL PF05791.11 gi|389848309|ref|YP_006350548.1| - 0.68 9.7 3.6 1.6 8.6 0.3 2.7 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) AAA_13 PF13166.6 gi|389848309|ref|YP_006350548.1| - 0.86 8.2 18.3 2.1 6.9 1.6 2.4 1 1 0 2 2 2 0 AAA domain Syntaxin-6_N PF09177.11 gi|389848309|ref|YP_006350548.1| - 1 9.9 20.3 1.4 9.5 3.8 4.6 2 2 2 4 4 4 0 Syntaxin 6, N-terminal APG6_N PF17675.1 gi|389848309|ref|YP_006350548.1| - 1.5 9.4 25.2 3.2 8.3 12.4 4.2 1 1 1 2 2 1 0 Apg6 coiled-coil region MAD PF05557.13 gi|389848309|ref|YP_006350548.1| - 1.5 7.0 13.0 0.45 8.8 5.8 2.1 1 1 0 2 2 2 0 Mitotic checkpoint protein Fzo_mitofusin PF04799.13 gi|389848309|ref|YP_006350548.1| - 2.2 7.8 8.2 17 5.0 0.3 4.0 2 2 2 4 4 4 0 fzo-like conserved region SKA1 PF07160.12 gi|389848309|ref|YP_006350548.1| - 2.2 8.0 8.1 1.5 8.6 3.8 2.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Use1 PF09753.9 gi|389848309|ref|YP_006350548.1| - 2.3 7.9 5.9 4 7.1 5.0 1.8 1 1 0 1 1 1 0 Membrane fusion protein Use1 Prominin PF05478.11 gi|389848309|ref|YP_006350548.1| - 2.4 6.0 6.6 10 4.0 4.9 2.5 1 1 0 2 2 2 0 Prominin Sec34 PF04136.15 gi|389848309|ref|YP_006350548.1| - 2.6 7.9 8.4 62 3.4 0.1 4.4 2 2 2 5 5 5 0 Sec34-like family Spectrin PF00435.21 gi|389848309|ref|YP_006350548.1| - 3.1 8.3 17.0 7.1 7.2 3.3 5.0 1 1 2 4 4 4 0 Spectrin repeat TMPIT PF07851.13 gi|389848309|ref|YP_006350548.1| - 3.2 6.9 8.3 18 4.4 0.2 3.0 2 2 0 2 2 2 0 TMPIT-like protein BORCS6 PF10157.9 gi|389848309|ref|YP_006350548.1| - 3.5 7.8 22.1 0.55 10.4 1.9 4.9 2 2 2 4 4 4 0 BLOC-1-related complex sub-unit 6 ZapB PF06005.12 gi|389848309|ref|YP_006350548.1| - 4 8.0 13.4 93 3.6 0.6 4.4 1 1 2 3 3 3 0 Cell division protein ZapB Nup54 PF13874.6 gi|389848309|ref|YP_006350548.1| - 4.1 7.5 17.4 11 6.1 0.1 4.9 4 2 2 6 6 4 0 Nucleoporin complex subunit 54 DUF4407 PF14362.6 gi|389848309|ref|YP_006350548.1| - 4.1 6.7 31.8 1.5 8.1 8.7 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|389848309|ref|YP_006350548.1| - 4.3 7.6 13.4 0.25 11.6 1.1 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF5082) Cob_adeno_trans PF01923.18 gi|389848309|ref|YP_006350548.1| - 4.7 7.3 11.9 1.2 9.2 1.6 3.2 1 1 2 3 3 3 0 Cobalamin adenosyltransferase YkyA PF10368.9 gi|389848309|ref|YP_006350548.1| - 5.1 6.7 22.6 0.24 11.1 6.1 3.6 1 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Seryl_tRNA_N PF02403.22 gi|389848309|ref|YP_006350548.1| - 6.1 7.1 21.6 2 8.7 2.7 4.5 2 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Ferritin PF00210.24 gi|389848309|ref|YP_006350548.1| - 7.5 6.5 19.2 0.071 13.0 4.3 3.7 2 2 1 3 3 3 0 Ferritin-like domain ATP-synt_D PF01813.17 gi|389848309|ref|YP_006350548.1| - 7.6 6.3 14.9 2.5 7.9 3.2 2.9 2 2 0 2 2 2 0 ATP synthase subunit D XhlA PF10779.9 gi|389848309|ref|YP_006350548.1| - 8.5 6.7 8.5 14 6.0 0.3 4.0 3 1 0 3 3 2 0 Haemolysin XhlA HhH-GPD PF00730.25 gi|389848305|ref|YP_006350544.1| - 1.1e-18 67.6 0.0 1.5e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|389848305|ref|YP_006350544.1| - 2.4e-08 33.4 0.0 5.6e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif FMN_red PF03358.15 gi|662859592|ref|YP_006350543.2| - 6.3e-35 120.2 0.0 8.1e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|662859592|ref|YP_006350543.2| - 2e-08 34.2 0.0 2.9e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|662859592|ref|YP_006350543.2| - 0.1 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain TK PF00265.18 gi|662859591|ref|YP_006350542.2| - 3.8e-49 166.9 0.0 4.3e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase Yip1 PF04893.17 gi|662859590|ref|YP_006350541.2| - 1.4e-10 41.2 19.8 1.9e-10 40.8 19.8 1.2 1 0 0 1 1 1 1 Yip1 domain tRNA_anti-codon PF01336.25 gi|389848301|ref|YP_006350540.1| - 1.4e-11 44.2 0.2 2.9e-11 43.2 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|389848301|ref|YP_006350540.1| - 9.6e-09 35.5 0.1 5.6e-08 33.0 0.0 2.3 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|389848301|ref|YP_006350540.1| - 6.8e-05 23.0 0.0 0.00021 21.5 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Prp19 PF08606.11 gi|389848301|ref|YP_006350540.1| - 0.043 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Prp19/Pso4-like RAP1 PF07218.11 gi|389848301|ref|YP_006350540.1| - 0.058 11.7 1.0 0.083 11.2 1.0 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) S1_2 PF13509.6 gi|389848301|ref|YP_006350540.1| - 0.12 12.4 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 S1 domain Radical_SAM PF04055.21 gi|389848300|ref|YP_006350539.1| - 4.2e-25 89.1 0.0 1.1e-24 87.7 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|389848300|ref|YP_006350539.1| - 1.3e-23 82.8 0.1 2.5e-23 81.9 0.1 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|389848300|ref|YP_006350539.1| - 1.9e-07 31.4 0.1 4.1e-07 30.2 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389848300|ref|YP_006350539.1| - 2.3e-05 24.4 0.1 6.6e-05 22.9 0.2 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848300|ref|YP_006350539.1| - 0.077 13.4 0.1 0.15 12.5 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MS_channel PF00924.18 gi|389848299|ref|YP_006350538.1| - 4.5e-46 157.0 0.3 4.5e-46 157.0 0.3 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel PRA1 PF03208.19 gi|389848299|ref|YP_006350538.1| - 3.6 7.2 13.0 0.89 9.2 3.2 2.5 1 1 1 2 2 2 0 PRA1 family protein MCPsignal PF00015.21 gi|389848298|ref|YP_006350537.1| - 3.6e-37 127.8 42.0 2.5e-36 125.1 22.2 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|389848298|ref|YP_006350537.1| - 2.1e-11 44.0 1.3 6.5e-10 39.2 0.0 3.5 3 1 0 3 3 2 1 PAS fold PAS_9 PF13426.7 gi|389848298|ref|YP_006350537.1| - 1.8e-10 41.0 0.3 1.3e-09 38.2 0.0 2.6 3 1 0 3 3 2 1 PAS domain PAS PF00989.25 gi|389848298|ref|YP_006350537.1| - 5.5e-09 36.0 0.1 3.6e-08 33.4 0.0 2.5 2 1 0 2 2 1 1 PAS fold PAS_8 PF13188.7 gi|389848298|ref|YP_006350537.1| - 0.00015 21.7 0.0 0.0015 18.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain Alpha-2-MRAP_C PF06401.11 gi|389848298|ref|YP_006350537.1| - 0.00072 19.6 7.8 0.028 14.4 2.6 2.5 2 1 0 2 2 2 2 Alpha-2-macroglobulin RAP, C-terminal domain MLTR_LBD PF17765.1 gi|389848298|ref|YP_006350537.1| - 0.0011 19.2 0.0 0.0011 19.2 0.0 4.0 2 2 1 5 5 4 1 MmyB-like transcription regulator ligand binding domain Ferritin PF00210.24 gi|389848298|ref|YP_006350537.1| - 0.0029 17.5 1.8 0.0029 17.5 1.8 3.0 2 2 0 2 2 2 1 Ferritin-like domain DUF948 PF06103.11 gi|389848298|ref|YP_006350537.1| - 0.006 16.8 37.3 0.01 16.0 5.2 5.7 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) LOH1CR12 PF10158.9 gi|389848298|ref|YP_006350537.1| - 0.0092 16.0 0.5 0.0092 16.0 0.5 2.8 2 1 1 3 3 3 1 Tumour suppressor protein DUF1664 PF07889.12 gi|389848298|ref|YP_006350537.1| - 0.011 15.8 1.5 0.011 15.8 1.5 4.7 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Nup88 PF10168.9 gi|389848298|ref|YP_006350537.1| - 0.013 13.4 14.0 0.013 13.3 5.6 2.1 2 0 0 2 2 2 0 Nuclear pore component Rootletin PF15035.6 gi|389848298|ref|YP_006350537.1| - 0.024 14.6 1.4 0.024 14.6 1.4 2.7 2 1 0 2 2 1 0 Ciliary rootlet component, centrosome cohesion DUF1043 PF06295.12 gi|389848298|ref|YP_006350537.1| - 0.096 12.7 4.6 3.6 7.6 0.7 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1043) Spc7 PF08317.11 gi|389848298|ref|YP_006350537.1| - 0.096 11.5 26.9 0.39 9.6 12.8 2.5 2 1 0 2 2 2 0 Spc7 kinetochore protein Sec34 PF04136.15 gi|389848298|ref|YP_006350537.1| - 0.11 12.4 22.5 0.88 9.4 0.1 4.5 2 2 3 5 5 5 0 Sec34-like family SKA1 PF07160.12 gi|389848298|ref|YP_006350537.1| - 0.19 11.6 10.5 0.21 11.4 3.9 2.3 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 YkyA PF10368.9 gi|389848298|ref|YP_006350537.1| - 0.19 11.4 28.4 0.16 11.6 9.6 3.5 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein Mce4_CUP1 PF11887.8 gi|389848298|ref|YP_006350537.1| - 0.21 11.0 14.4 0.02 14.4 2.8 2.6 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative SbsC_C PF18058.1 gi|389848298|ref|YP_006350537.1| - 0.34 11.1 4.9 0.15 12.3 0.7 2.4 2 1 1 3 3 2 0 SbsC C-terminal domain BLOC1_2 PF10046.9 gi|389848298|ref|YP_006350537.1| - 0.46 10.8 21.0 6 7.2 0.4 5.0 3 3 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 gi|389848298|ref|YP_006350537.1| - 0.46 10.7 19.5 7 6.9 2.8 4.2 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain CheZ PF04344.13 gi|389848298|ref|YP_006350537.1| - 0.64 9.9 26.3 2.3 8.1 6.5 3.3 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ Goodbye PF17109.5 gi|389848298|ref|YP_006350537.1| - 0.65 10.4 4.7 2.8 8.4 0.0 3.5 2 2 0 2 2 2 0 fungal STAND N-terminal Goodbye domain Atg14 PF10186.9 gi|389848298|ref|YP_006350537.1| - 0.71 8.9 10.6 7.5 5.5 0.9 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DinB PF05163.12 gi|389848298|ref|YP_006350537.1| - 0.85 9.5 12.4 0.086 12.8 3.7 2.7 1 1 1 3 3 3 0 DinB family ApoO PF09769.9 gi|389848298|ref|YP_006350537.1| - 0.99 9.4 8.0 11 6.0 0.1 3.6 2 1 1 3 3 3 0 Apolipoprotein O ATG16 PF08614.11 gi|389848298|ref|YP_006350537.1| - 1.3 9.2 25.8 0.14 12.4 5.6 2.7 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF3450 PF11932.8 gi|389848298|ref|YP_006350537.1| - 1.4 8.2 27.2 0.96 8.7 7.9 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) Jnk-SapK_ap_N PF09744.9 gi|389848298|ref|YP_006350537.1| - 1.5 9.0 29.9 0.33 11.2 6.0 3.5 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 DUF745 PF05335.13 gi|389848298|ref|YP_006350537.1| - 2.4 7.9 28.1 3.1 7.5 5.3 3.6 1 1 1 3 3 3 0 Protein of unknown function (DUF745) His_Phos_2 PF00328.22 gi|389848298|ref|YP_006350537.1| - 2.4 7.4 8.6 0.7 9.2 4.4 1.9 1 1 0 2 2 2 0 Histidine phosphatase superfamily (branch 2) Prominin PF05478.11 gi|389848298|ref|YP_006350537.1| - 2.6 5.9 16.7 6.9 4.5 11.4 2.2 1 1 1 2 2 2 0 Prominin TMPIT PF07851.13 gi|389848298|ref|YP_006350537.1| - 4.1 6.6 15.3 0.98 8.6 4.0 2.6 3 1 0 3 3 2 0 TMPIT-like protein Laminin_II PF06009.12 gi|389848298|ref|YP_006350537.1| - 4.3 7.4 32.4 1.6 8.7 3.3 4.8 2 2 3 6 6 6 0 Laminin Domain II DUF2203 PF09969.9 gi|389848298|ref|YP_006350537.1| - 5.3 7.8 21.9 5.7 7.7 2.2 4.3 1 1 4 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fib_alpha PF08702.10 gi|389848298|ref|YP_006350537.1| - 6 7.1 20.3 8 6.6 5.3 4.0 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Acetyltransf_10 PF13673.7 gi|389848297|ref|YP_006350536.1| - 7.1e-23 80.9 0.0 7.9e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848297|ref|YP_006350536.1| - 4.9e-14 52.6 0.1 6e-14 52.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389848297|ref|YP_006350536.1| - 1.5e-10 41.3 0.1 2.6e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389848297|ref|YP_006350536.1| - 1.8e-07 31.3 0.5 6.2e-07 29.5 0.5 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848297|ref|YP_006350536.1| - 7.9e-07 29.0 0.1 1.1e-06 28.5 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|389848297|ref|YP_006350536.1| - 0.0024 18.0 0.1 0.0046 17.0 0.1 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|389848297|ref|YP_006350536.1| - 0.021 15.0 0.0 0.031 14.4 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Autoind_synth PF00765.17 gi|389848297|ref|YP_006350536.1| - 0.05 13.2 0.1 0.076 12.6 0.1 1.2 1 0 0 1 1 1 0 Autoinducer synthase FbpA PF05833.11 gi|389848295|ref|YP_006350534.1| - 1.3e-88 297.7 0.1 1.7e-88 297.4 0.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|389848295|ref|YP_006350534.1| - 2.9e-24 85.8 0.0 6.2e-24 84.7 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|389848295|ref|YP_006350534.1| - 6.8e-05 23.0 0.0 0.00023 21.3 0.0 1.9 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF4013 PF13197.6 gi|389848294|ref|YP_006350533.1| - 2.4e-40 138.1 18.9 2.4e-40 138.1 18.9 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF4013 PF13197.6 gi|389848293|ref|YP_006350532.1| - 5e-30 104.6 20.2 5e-30 104.6 20.2 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF5527 PF17665.1 gi|389848293|ref|YP_006350532.1| - 0.73 9.4 4.5 0.86 9.1 0.1 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5527) PDGLE PF13190.6 gi|389848293|ref|YP_006350532.1| - 1.3 9.0 0.0 1.3 9.0 0.0 3.2 3 2 1 4 4 4 0 PDGLE domain eRF1_1 PF03463.15 gi|389848292|ref|YP_006350531.1| - 1.1e-28 99.8 0.1 1.7e-28 99.2 0.1 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|389848292|ref|YP_006350531.1| - 1e-24 87.2 1.0 3.6e-24 85.4 0.1 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|389848292|ref|YP_006350531.1| - 2.1e-06 28.1 0.0 1.5e-05 25.3 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 2 DUF3892 PF13031.6 gi|389848292|ref|YP_006350531.1| - 0.068 13.8 1.7 8.9 7.0 0.1 2.9 3 1 1 4 4 4 0 Protein of unknown function (DUF3892) OCD_Mu_crystall PF02423.15 gi|662859589|ref|YP_006350530.2| - 1.4e-69 234.5 0.7 1.6e-69 234.3 0.7 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|662859589|ref|YP_006350530.2| - 6e-05 23.1 0.0 8.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|662859589|ref|YP_006350530.2| - 0.0002 21.9 0.3 0.00049 20.6 0.3 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent MFS_1 PF07690.16 gi|662859588|ref|YP_006350528.2| - 3.3e-29 101.9 61.7 1.4e-21 76.9 27.4 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|662859588|ref|YP_006350528.2| - 1.9 6.8 24.4 0.73 8.2 6.9 2.6 2 1 0 2 2 2 0 Transmembrane secretion effector DUF3054 PF11255.8 gi|389848288|ref|YP_006350527.1| - 6.6e-22 78.1 7.7 7.7e-22 77.9 7.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) DUF2070 PF09843.9 gi|389848288|ref|YP_006350527.1| - 0.25 9.6 2.8 0.28 9.4 2.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Methyltransf_11 PF08241.12 gi|389848287|ref|YP_006350526.1| - 4.4e-19 68.9 0.1 7.1e-19 68.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389848287|ref|YP_006350526.1| - 2.2e-16 60.3 0.1 3.8e-16 59.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389848287|ref|YP_006350526.1| - 1.1e-10 41.4 0.0 1.5e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389848287|ref|YP_006350526.1| - 2.5e-10 40.1 0.0 4.6e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|389848287|ref|YP_006350526.1| - 3.6e-09 37.3 0.0 6.3e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389848287|ref|YP_006350526.1| - 1.1e-08 35.2 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|389848287|ref|YP_006350526.1| - 0.00025 21.0 0.0 0.00059 19.8 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|389848287|ref|YP_006350526.1| - 0.025 14.2 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|389848287|ref|YP_006350526.1| - 0.21 10.9 0.4 1.8 7.8 0.4 2.0 1 1 0 1 1 1 0 O-methyltransferase domain Acetyltransf_1 PF00583.25 gi|389848286|ref|YP_006350525.1| - 0.00026 21.2 0.0 0.00043 20.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389848286|ref|YP_006350525.1| - 0.0019 18.2 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain XPG_I PF00867.18 gi|389848285|ref|YP_006350524.1| - 1.8e-23 82.7 0.0 3.8e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|389848285|ref|YP_006350524.1| - 2.5e-12 47.2 0.0 4.2e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|389848285|ref|YP_006350524.1| - 0.00017 22.2 0.1 0.001 19.6 0.0 2.1 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|389848285|ref|YP_006350524.1| - 0.0033 17.3 0.0 0.0069 16.3 0.0 1.7 2 1 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain CytB6-F_Fe-S PF08802.10 gi|389848284|ref|YP_006350523.1| - 0.044 13.8 0.2 0.14 12.2 0.2 1.8 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Aminotran_3 PF00202.21 gi|662859587|ref|YP_006350522.2| - 6.7e-77 258.8 0.0 1.5e-76 257.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-III AI-2E_transport PF01594.16 gi|662859586|ref|YP_006350521.2| - 5.5e-24 84.9 31.9 2e-23 83.1 31.9 1.7 1 1 0 1 1 1 1 AI-2E family transporter Gate PF07670.14 gi|662859586|ref|YP_006350521.2| - 4.3 7.6 10.9 0.058 13.7 1.4 2.6 2 2 0 2 2 2 0 Nucleoside recognition PadR PF03551.14 gi|389848281|ref|YP_006350520.1| - 1.9e-17 63.0 2.4 2.3e-17 62.7 2.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|389848281|ref|YP_006350520.1| - 0.0016 18.2 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|389848281|ref|YP_006350520.1| - 0.013 15.4 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|389848281|ref|YP_006350520.1| - 0.019 15.4 0.3 0.033 14.7 0.3 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|389848281|ref|YP_006350520.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|389848281|ref|YP_006350520.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HypA PF01155.19 gi|662859585|ref|YP_006350517.2| - 0.0021 18.1 0.9 0.004 17.2 0.9 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|662859585|ref|YP_006350517.2| - 0.0043 17.0 2.8 0.38 10.8 0.1 2.5 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|662859585|ref|YP_006350517.2| - 0.026 14.0 2.0 0.06 12.9 1.7 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|662859585|ref|YP_006350517.2| - 0.026 14.5 0.6 0.043 13.8 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|662859585|ref|YP_006350517.2| - 0.036 14.1 0.6 0.064 13.3 0.6 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1451 PF07295.11 gi|662859585|ref|YP_006350517.2| - 0.063 13.3 1.5 0.14 12.2 0.8 1.9 2 0 0 2 2 2 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|662859585|ref|YP_006350517.2| - 0.14 12.3 2.6 0.33 11.1 2.6 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|662859585|ref|YP_006350517.2| - 2.6 7.9 5.4 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|662859585|ref|YP_006350517.2| - 4 7.0 5.9 2.6 7.6 0.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|662859585|ref|YP_006350517.2| - 8.5 6.6 6.4 14 5.8 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RRN7 PF11781.8 gi|662859584|ref|YP_006350516.2| - 0.0034 17.0 1.2 0.54 10.0 0.0 2.3 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NUDIX PF00293.28 gi|389848276|ref|YP_006350515.1| - 5.3e-17 62.1 0.8 7.9e-17 61.5 0.8 1.2 1 0 0 1 1 1 1 NUDIX domain DUF2095 PF09868.9 gi|389848276|ref|YP_006350515.1| - 0.077 13.0 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) GvpL_GvpF PF06386.11 gi|389848276|ref|YP_006350515.1| - 0.099 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF THF_DHG_CYH_C PF02882.19 gi|389848275|ref|YP_006350514.1| - 4.7e-68 227.5 2.2 6.5e-68 227.1 2.2 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|389848275|ref|YP_006350514.1| - 6.7e-38 129.5 0.1 1.1e-37 128.9 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GreA_GreB PF01272.19 gi|389848275|ref|YP_006350514.1| - 0.048 13.6 0.1 0.93 9.4 0.0 2.3 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term Glyco_trans_1_4 PF13692.6 gi|389848275|ref|YP_006350514.1| - 0.075 13.5 0.2 0.075 13.5 0.2 1.7 2 0 0 2 2 2 0 Glycosyl transferases group 1 AlaDh_PNT_C PF01262.21 gi|389848275|ref|YP_006350514.1| - 0.076 12.3 3.3 0.16 11.2 3.3 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain VIT1 PF01988.19 gi|389848274|ref|YP_006350513.1| - 6.1e-10 39.3 4.2 6.1e-10 39.3 4.2 2.0 2 0 0 2 2 2 1 VIT family ATP-synt_J PF04911.12 gi|389848274|ref|YP_006350513.1| - 0.19 11.3 0.3 0.41 10.3 0.3 1.6 1 0 0 1 1 1 0 ATP synthase j chain DUF211 PF02680.14 gi|389848273|ref|YP_006350512.1| - 2.3e-34 117.4 0.5 2.6e-34 117.2 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 SHMT PF00464.19 gi|389848272|ref|YP_006350511.1| - 3.3e-156 519.9 0.0 3.9e-156 519.7 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|389848272|ref|YP_006350511.1| - 2.5e-09 36.8 0.0 4.8e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|389848272|ref|YP_006350511.1| - 1.7e-05 24.3 0.0 0.1 11.9 0.0 2.1 2 0 0 2 2 2 2 Beta-eliminating lyase PhoU_div PF01865.16 gi|389848272|ref|YP_006350511.1| - 0.072 12.4 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF47 YcaO PF02624.16 gi|389848270|ref|YP_006350509.1| - 1.3e-57 195.5 3.3 2e-57 194.9 3.3 1.3 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF63 PF01889.17 gi|389848269|ref|YP_006350508.1| - 2.9e-40 139.2 9.5 5.1e-39 135.1 8.6 2.4 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 HTH_AsnC-type PF13404.6 gi|389848268|ref|YP_006350507.1| - 8.7e-17 60.7 1.4 1.8e-16 59.7 1.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389848268|ref|YP_006350507.1| - 1e-16 60.2 0.0 1.8e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|389848268|ref|YP_006350507.1| - 1.3e-15 57.1 0.0 1.9e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|389848268|ref|YP_006350507.1| - 3.4e-08 33.4 0.1 8.2e-08 32.2 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389848268|ref|YP_006350507.1| - 3.9e-07 29.9 0.1 9.5e-06 25.4 0.0 2.3 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389848268|ref|YP_006350507.1| - 1.7e-05 24.5 0.0 6.5e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 gi|389848268|ref|YP_006350507.1| - 2.7e-05 24.0 0.0 6.4e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|389848268|ref|YP_006350507.1| - 0.00055 20.4 0.1 0.0028 18.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|389848268|ref|YP_006350507.1| - 0.0024 17.7 0.0 0.0049 16.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|389848268|ref|YP_006350507.1| - 0.0062 16.0 0.6 0.84 9.2 0.0 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|389848268|ref|YP_006350507.1| - 0.0084 16.3 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|389848268|ref|YP_006350507.1| - 0.032 14.1 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|389848268|ref|YP_006350507.1| - 0.04 13.9 0.1 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389848268|ref|YP_006350507.1| - 0.05 13.3 0.0 0.14 11.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|389848268|ref|YP_006350507.1| - 0.054 13.4 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2774 PF11242.8 gi|389848268|ref|YP_006350507.1| - 0.095 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) HTH_Tnp_ISL3 PF13542.6 gi|389848268|ref|YP_006350507.1| - 0.15 11.5 0.1 0.29 10.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2441 PF10386.9 gi|389848268|ref|YP_006350507.1| - 0.15 12.1 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2441) Inositol_P PF00459.25 gi|389848267|ref|YP_006350506.1| - 1.2e-49 169.3 1.5 1.3e-49 169.1 1.5 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|389848267|ref|YP_006350506.1| - 0.041 13.3 0.2 0.097 12.1 0.0 1.6 2 0 0 2 2 2 0 Fructose-1-6-bisphosphatase, N-terminal domain DUF2388 PF09498.10 gi|389848267|ref|YP_006350506.1| - 0.12 12.4 2.7 0.36 10.8 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2388) DUF1771 PF08590.10 gi|389848266|ref|YP_006350505.1| - 0.015 15.7 0.2 0.056 13.8 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) DUF668 PF05003.12 gi|389848266|ref|YP_006350505.1| - 0.043 14.3 0.0 1.1 9.8 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF668) SMC_hinge PF06470.13 gi|389848266|ref|YP_006350505.1| - 0.067 13.5 0.0 0.074 13.4 0.0 1.2 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain SMBP PF16785.5 gi|389848266|ref|YP_006350505.1| - 0.067 13.4 0.1 0.1 12.8 0.1 1.4 1 1 0 1 1 1 0 Small metal-binding protein DsbD_2 PF13386.6 gi|389848264|ref|YP_006350503.1| - 1.5e-06 28.3 9.9 2.2e-06 27.7 9.9 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region NicO PF03824.16 gi|389848264|ref|YP_006350503.1| - 0.00011 21.6 3.3 0.00011 21.6 3.3 2.3 1 1 1 2 2 2 1 High-affinity nickel-transport protein SfLAP PF11139.8 gi|389848264|ref|YP_006350503.1| - 0.36 10.2 21.0 0.025 14.0 4.3 2.3 1 1 0 2 2 2 0 Sap, sulfolipid-1-addressing protein DUF309 PF03745.14 gi|389848262|ref|YP_006350501.1| - 1.4e-14 53.4 0.1 2.2e-14 52.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Aldo_ket_red PF00248.21 gi|389848262|ref|YP_006350501.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family AstE_AspA PF04952.14 gi|389848261|ref|YP_006350500.1| - 3.3e-11 42.8 0.1 5.7e-11 42.0 0.0 1.5 2 0 0 2 2 2 1 Succinylglutamate desuccinylase / Aspartoacylase family HAD_2 PF13419.6 gi|389848260|ref|YP_006350499.1| - 3.6e-14 53.2 0.0 4.3e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389848260|ref|YP_006350499.1| - 1.1e-09 38.2 0.6 3e-09 36.8 0.6 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|389848260|ref|YP_006350499.1| - 7.6e-07 29.7 1.6 9.5e-07 29.4 1.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase UPF0179 PF03684.13 gi|389848259|ref|YP_006350498.1| - 6.3e-49 165.5 0.0 7.1e-49 165.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|389848259|ref|YP_006350498.1| - 0.0032 17.7 1.0 0.0066 16.7 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain Opy2 PF09463.10 gi|389848259|ref|YP_006350498.1| - 4.5 7.7 9.1 5.6 7.4 2.0 2.4 2 0 0 2 2 2 0 Opy2 protein PrkA PF06798.12 gi|389848257|ref|YP_006350496.1| - 4.1e-68 229.8 6.9 4.1e-68 229.8 6.9 2.2 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|389848257|ref|YP_006350496.1| - 4e-63 213.5 0.0 7.3e-63 212.6 0.0 1.4 1 1 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|389848257|ref|YP_006350496.1| - 0.0074 16.4 0.3 0.32 11.2 0.1 2.6 2 1 0 2 2 2 1 RasGAP C-terminus ATP-synt_10 PF05176.14 gi|389848257|ref|YP_006350496.1| - 0.1 11.8 0.1 0.28 10.4 0.0 1.7 2 0 0 2 2 2 0 ATP10 protein DUF2267 PF10025.9 gi|389848257|ref|YP_006350496.1| - 0.4 11.0 4.7 49 4.2 1.8 3.4 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2267) PrkA PF06798.12 gi|389848256|ref|YP_006350495.1| - 6.4e-37 127.6 0.0 1.2e-36 126.6 0.0 1.4 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|389848256|ref|YP_006350495.1| - 3.9e-16 58.9 0.0 8.8e-13 47.9 0.0 2.9 2 1 0 2 2 2 2 PrkA AAA domain DUF444 PF04285.12 gi|389848255|ref|YP_006350494.1| - 6.1e-126 420.9 0.2 6.9e-126 420.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) SpoVR PF04293.13 gi|389848254|ref|YP_006350493.1| - 2e-92 310.0 9.1 1.5e-76 257.8 2.0 2.1 2 0 0 2 2 2 2 SpoVR like protein Osmo_CC PF08946.10 gi|389848254|ref|YP_006350493.1| - 0.59 10.4 5.3 1.4 9.2 0.3 3.4 3 0 0 3 3 3 0 Osmosensory transporter coiled coil DsbB PF02600.16 gi|389848252|ref|YP_006350491.1| - 5e-17 62.7 7.2 1.6e-16 61.1 7.2 1.6 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB DUF4010 PF13194.6 gi|389848251|ref|YP_006350490.1| - 2.7e-54 184.1 20.9 2.7e-54 184.1 20.9 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|389848251|ref|YP_006350490.1| - 2.2e-15 57.1 10.7 2e-09 37.8 5.3 4.6 4 2 0 4 4 4 2 MgtC family 3HCDH_N PF02737.18 gi|389848250|ref|YP_006350489.1| - 1.2e-68 230.5 0.3 2.3e-68 229.6 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|389848250|ref|YP_006350489.1| - 2.9e-59 200.4 0.0 4.7e-59 199.7 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|389848250|ref|YP_006350489.1| - 6e-50 167.8 1.3 1.9e-32 111.8 0.0 3.6 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|389848250|ref|YP_006350489.1| - 1.8e-36 126.4 0.3 3.9e-34 118.6 0.0 2.9 2 1 1 3 3 3 1 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|389848250|ref|YP_006350489.1| - 1.5e-06 28.2 0.0 2.8e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|389848250|ref|YP_006350489.1| - 2.4e-05 24.6 0.1 5.8e-05 23.3 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|389848250|ref|YP_006350489.1| - 2.6e-05 24.7 0.5 0.0001 22.8 0.5 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|389848250|ref|YP_006350489.1| - 0.0072 15.9 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|389848250|ref|YP_006350489.1| - 0.037 14.3 0.2 0.086 13.1 0.2 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DFP PF04127.15 gi|389848250|ref|YP_006350489.1| - 0.078 12.8 0.2 0.2 11.4 0.1 1.9 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein 2-Hacid_dh_C PF02826.19 gi|389848250|ref|YP_006350489.1| - 0.11 11.9 1.0 0.65 9.3 0.2 2.2 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|389848250|ref|YP_006350489.1| - 0.15 11.6 0.5 0.78 9.3 0.3 2.1 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase TetR_C_6 PF13977.6 gi|389848250|ref|YP_006350489.1| - 0.24 11.6 3.2 8.2 6.7 0.3 3.3 3 0 0 3 3 3 0 BetI-type transcriptional repressor, C-terminal HhH-GPD PF00730.25 gi|389848249|ref|YP_006350488.1| - 2.8e-18 66.4 0.0 3.5e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein RimK PF08443.11 gi|389848248|ref|YP_006350487.1| - 5.8e-22 78.2 0.0 1.3e-21 77.1 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|389848248|ref|YP_006350487.1| - 2.8e-09 37.0 0.3 1.9e-07 31.0 0.3 2.3 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|389848248|ref|YP_006350487.1| - 9.7e-06 25.1 0.0 2.3e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain gag-asp_proteas PF13975.6 gi|389848248|ref|YP_006350487.1| - 7.7e-05 23.2 0.3 0.00023 21.7 0.3 1.9 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|389848248|ref|YP_006350487.1| - 0.00017 22.2 0.8 0.00053 20.6 0.8 1.9 1 0 0 1 1 1 1 Aspartyl protease ATP-grasp_3 PF02655.14 gi|389848248|ref|YP_006350487.1| - 0.0015 18.6 0.0 0.012 15.6 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain R2K_3 PF14243.6 gi|389848248|ref|YP_006350487.1| - 0.0022 18.0 0.1 0.0048 16.9 0.1 1.7 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 ATPgrasp_YheCD PF14398.6 gi|389848248|ref|YP_006350487.1| - 0.021 14.1 0.0 0.055 12.7 0.0 1.7 1 1 0 1 1 1 0 YheC/D like ATP-grasp DUF5488 PF17590.2 gi|389848248|ref|YP_006350487.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5488) AstE_AspA PF04952.14 gi|389848247|ref|YP_006350486.1| - 6.1e-67 225.7 0.0 7.5e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.22 gi|662859583|ref|YP_006350485.2| - 6.3e-25 87.6 6.5 7.1e-25 87.4 6.5 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|389848245|ref|YP_006350484.1| - 7.5e-09 35.7 4.3 9.7e-09 35.3 4.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DHHC PF01529.20 gi|389848245|ref|YP_006350484.1| - 0.2 11.8 1.8 1.7 8.8 0.1 2.0 2 0 0 2 2 2 0 DHHC palmitoyltransferase Fer2_3 PF13085.6 gi|389848244|ref|YP_006350483.1| - 6.1e-32 109.9 0.0 1.1e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|389848244|ref|YP_006350483.1| - 6.2e-12 45.8 4.0 6.2e-12 45.8 4.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389848244|ref|YP_006350483.1| - 6.8e-08 32.5 4.0 1.6e-07 31.4 4.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389848244|ref|YP_006350483.1| - 1.1e-05 25.9 3.0 4e-05 24.1 3.0 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|389848244|ref|YP_006350483.1| - 0.00011 22.7 4.5 0.00028 21.4 4.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389848244|ref|YP_006350483.1| - 0.00077 19.6 8.0 0.0046 17.1 7.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|389848244|ref|YP_006350483.1| - 0.023 14.4 8.2 0.59 9.9 0.4 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|389848244|ref|YP_006350483.1| - 2.3 9.2 15.2 1 10.3 8.3 3.0 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|389848244|ref|YP_006350483.1| - 7.4 7.8 11.8 2.1 9.5 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389848244|ref|YP_006350483.1| - 8 6.7 13.7 5 7.4 0.2 2.9 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389848244|ref|YP_006350483.1| - 9.9 7.0 8.8 19 6.1 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|389848243|ref|YP_006350482.1| - 4e-121 405.0 7.6 6.7e-121 404.3 7.6 1.4 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|389848243|ref|YP_006350482.1| - 2.5e-38 130.9 0.3 4.3e-38 130.2 0.3 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|389848243|ref|YP_006350482.1| - 1.9e-09 37.2 0.9 0.0002 20.7 0.1 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|389848243|ref|YP_006350482.1| - 4.8e-05 23.1 7.5 0.0026 17.4 7.2 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389848243|ref|YP_006350482.1| - 0.00038 19.3 1.5 0.00038 19.3 1.5 2.0 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|389848243|ref|YP_006350482.1| - 0.00069 19.1 3.5 0.00069 19.1 3.5 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|389848243|ref|YP_006350482.1| - 0.0023 17.1 5.7 0.0024 17.0 3.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|389848243|ref|YP_006350482.1| - 0.0034 16.7 1.0 0.0072 15.6 1.0 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|389848243|ref|YP_006350482.1| - 0.0043 16.3 1.9 0.022 14.0 0.5 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|389848243|ref|YP_006350482.1| - 0.011 15.0 1.5 0.03 13.6 0.5 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389848243|ref|YP_006350482.1| - 0.026 13.8 2.1 0.032 13.5 0.3 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|389848243|ref|YP_006350482.1| - 0.051 14.1 1.7 0.28 11.8 0.7 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389848243|ref|YP_006350482.1| - 0.074 13.3 0.4 0.31 11.3 0.4 2.2 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|389848243|ref|YP_006350482.1| - 0.078 13.4 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding TrmB PF01978.19 gi|389848242|ref|YP_006350481.1| - 9.2e-07 28.7 0.0 1.1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|389848242|ref|YP_006350481.1| - 0.0031 17.3 0.0 0.004 16.9 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|389848242|ref|YP_006350481.1| - 0.0082 16.1 0.1 0.013 15.4 0.1 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389848242|ref|YP_006350481.1| - 0.034 14.0 0.0 0.04 13.8 0.0 1.1 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|389848242|ref|YP_006350481.1| - 0.036 14.0 0.0 0.057 13.4 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|389848242|ref|YP_006350481.1| - 0.057 13.8 0.0 0.071 13.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_34 PF13601.6 gi|389848242|ref|YP_006350481.1| - 0.077 13.2 0.1 0.1 12.8 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|389848242|ref|YP_006350481.1| - 0.1 12.7 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|389848242|ref|YP_006350481.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 MarR family FeoC PF09012.10 gi|389848242|ref|YP_006350481.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator Glyco_tranf_2_3 PF13641.6 gi|389848239|ref|YP_006350478.1| - 6.2e-26 91.7 0.0 1.1e-25 90.9 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|389848239|ref|YP_006350478.1| - 1e-23 84.3 1.2 1.6e-23 83.6 1.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|389848239|ref|YP_006350478.1| - 1.3e-10 41.3 0.0 2e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|389848239|ref|YP_006350478.1| - 0.015 14.8 0.0 3.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase family 21 Acetyltransf_1 PF00583.25 gi|389848238|ref|YP_006350477.1| - 1.4e-13 51.1 0.0 1.7e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389848238|ref|YP_006350477.1| - 1.8e-10 40.8 0.0 2.5e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848238|ref|YP_006350477.1| - 9.6e-10 38.8 0.0 1.4e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389848238|ref|YP_006350477.1| - 0.00037 20.6 0.0 0.00046 20.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848238|ref|YP_006350477.1| - 0.00045 20.1 0.0 0.0008 19.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|389848238|ref|YP_006350477.1| - 0.0049 17.0 0.0 0.0072 16.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|389848238|ref|YP_006350477.1| - 0.04 13.9 0.0 0.091 12.8 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase BPD_transp_2 PF02653.16 gi|389848237|ref|YP_006350476.1| - 8.4e-31 107.1 44.3 8.4e-31 107.1 44.3 2.0 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|389848235|ref|YP_006350474.1| - 9e-45 152.9 30.2 1.5e-44 152.2 30.2 1.4 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|389848234|ref|YP_006350473.1| - 1.1e-31 110.2 0.0 1.4e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848234|ref|YP_006350473.1| - 5.8e-12 46.0 2.1 5.4e-06 26.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|389848234|ref|YP_006350473.1| - 7.9e-11 41.6 0.0 1.6e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|389848234|ref|YP_006350473.1| - 4.8e-05 23.9 0.0 6.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389848234|ref|YP_006350473.1| - 0.00016 21.3 0.4 0.00033 20.3 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389848234|ref|YP_006350473.1| - 0.00048 19.6 0.3 0.092 12.2 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389848234|ref|YP_006350473.1| - 0.0022 17.7 0.0 0.0085 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389848234|ref|YP_006350473.1| - 0.0028 18.1 0.0 0.28 11.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 gi|389848234|ref|YP_006350473.1| - 0.0073 16.1 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 MukB N-terminal Zeta_toxin PF06414.12 gi|389848234|ref|YP_006350473.1| - 0.071 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|389848234|ref|YP_006350473.1| - 0.091 12.9 0.5 0.16 12.0 0.5 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|389848234|ref|YP_006350473.1| - 0.12 12.0 0.2 0.22 11.1 0.2 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389848234|ref|YP_006350473.1| - 0.18 11.7 0.3 0.36 10.7 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|389848233|ref|YP_006350472.1| - 2e-30 106.1 0.0 3.3e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848233|ref|YP_006350472.1| - 1.8e-09 37.8 0.1 0.00086 19.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848233|ref|YP_006350472.1| - 0.00048 19.6 1.2 0.0096 15.4 1.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389848233|ref|YP_006350472.1| - 0.0047 16.7 0.0 0.43 10.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|389848233|ref|YP_006350472.1| - 0.0089 16.6 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389848233|ref|YP_006350472.1| - 0.012 15.3 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|389848233|ref|YP_006350472.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|389848233|ref|YP_006350472.1| - 0.021 15.1 0.4 0.13 12.6 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389848233|ref|YP_006350472.1| - 0.031 14.0 0.1 0.075 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|389848233|ref|YP_006350472.1| - 0.041 14.4 0.3 5 7.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain MukB PF04310.12 gi|389848233|ref|YP_006350472.1| - 0.072 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_10 PF12846.7 gi|389848233|ref|YP_006350472.1| - 0.073 12.0 0.2 0.18 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain RsgA_GTPase PF03193.16 gi|389848233|ref|YP_006350472.1| - 0.17 11.8 0.1 0.49 10.3 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase SbcCD_C PF13558.6 gi|389848233|ref|YP_006350472.1| - 0.2 11.9 1.9 6.6 7.0 1.9 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF4469 PF14734.6 gi|389848232|ref|YP_006350471.1| - 0.0078 16.4 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4469) with IG-like fold DUF3244 PF11589.8 gi|389848232|ref|YP_006350471.1| - 0.12 12.4 0.0 0.32 11.1 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) Peripla_BP_6 PF13458.6 gi|389848230|ref|YP_006350469.1| - 5.9e-26 91.9 3.3 2.6e-20 73.4 0.8 2.2 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|389848230|ref|YP_006350469.1| - 6.5e-18 64.9 0.5 4.1e-12 45.9 0.5 2.0 2 0 0 2 2 2 2 Receptor family ligand binding region TAT_signal PF10518.9 gi|389848230|ref|YP_006350469.1| - 0.00012 21.7 3.0 0.00012 21.7 3.0 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_5 PF13433.6 gi|389848230|ref|YP_006350469.1| - 0.00039 19.5 0.1 0.0013 17.8 0.1 1.8 2 0 0 2 2 2 1 Periplasmic binding protein domain PRK PF00485.18 gi|389848229|ref|YP_006350468.1| - 3.1e-52 177.2 0.0 4.4e-52 176.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|389848229|ref|YP_006350468.1| - 1.5e-06 28.3 0.1 1.9e-05 24.6 0.1 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|389848229|ref|YP_006350468.1| - 0.00029 21.4 0.6 0.00085 19.9 0.4 1.9 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|389848229|ref|YP_006350468.1| - 0.00033 20.4 1.8 0.037 13.7 0.0 2.5 3 0 0 3 3 3 2 Dephospho-CoA kinase ABC_tran PF00005.27 gi|389848229|ref|YP_006350468.1| - 0.00053 20.5 0.0 0.00081 19.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.12 gi|389848229|ref|YP_006350468.1| - 0.00059 19.2 0.0 0.0014 17.9 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|389848229|ref|YP_006350468.1| - 0.0027 18.0 0.0 0.0049 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|389848229|ref|YP_006350468.1| - 0.0052 16.7 0.0 0.011 15.6 0.0 1.6 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.6 gi|389848229|ref|YP_006350468.1| - 0.0088 16.2 0.0 0.025 14.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|389848229|ref|YP_006350468.1| - 0.0092 16.4 4.3 1.3 9.5 0.1 2.7 2 1 1 3 3 3 2 AAA domain AAA_28 PF13521.6 gi|389848229|ref|YP_006350468.1| - 0.0098 16.1 0.1 0.023 14.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|389848229|ref|YP_006350468.1| - 0.055 13.3 0.1 3 7.6 0.0 2.1 1 1 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|389848229|ref|YP_006350468.1| - 0.066 12.9 0.7 0.86 9.3 0.0 2.4 2 1 0 2 2 2 0 Cytidylate kinase AAA_24 PF13479.6 gi|389848229|ref|YP_006350468.1| - 0.08 12.7 0.1 0.19 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|389848229|ref|YP_006350468.1| - 0.18 11.7 1.1 1.2 9.1 0.3 2.5 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Torsin PF06309.11 gi|389848229|ref|YP_006350468.1| - 0.22 11.6 0.0 0.4 10.8 0.0 1.5 1 0 0 1 1 1 0 Torsin DUF2064 PF09837.9 gi|389848227|ref|YP_006350466.1| - 3.5e-06 26.8 0.0 5.4e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|389848227|ref|YP_006350466.1| - 0.002 17.4 0.0 0.81 8.8 0.0 2.1 2 0 0 2 2 2 2 Guanylyl transferase CofC like UDG PF03167.19 gi|389848226|ref|YP_006350465.1| - 2.1e-24 86.3 0.0 2.5e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ParA PF10609.9 gi|389848224|ref|YP_006350463.1| - 3.1e-100 334.7 0.0 3.8e-100 334.4 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|389848224|ref|YP_006350463.1| - 2.5e-13 50.2 0.0 8.5e-13 48.5 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|389848224|ref|YP_006350463.1| - 1.2e-12 47.8 0.4 2.3e-12 46.9 0.4 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|389848224|ref|YP_006350463.1| - 8.2e-11 42.1 0.4 4.5e-09 36.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|389848224|ref|YP_006350463.1| - 1.3e-07 31.2 0.0 1.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|389848224|ref|YP_006350463.1| - 0.00021 20.6 3.1 0.00084 18.6 1.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|389848224|ref|YP_006350463.1| - 0.00023 20.5 0.0 0.00037 19.9 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 gi|389848224|ref|YP_006350463.1| - 0.00056 19.4 0.1 0.011 15.2 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|389848224|ref|YP_006350463.1| - 0.0022 17.6 0.0 0.0047 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|389848224|ref|YP_006350463.1| - 0.0031 17.4 0.0 1.5 8.6 0.0 2.5 3 0 0 3 3 3 2 AAA domain CLP1_P PF16575.5 gi|389848224|ref|YP_006350463.1| - 0.037 13.8 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|389848224|ref|YP_006350463.1| - 0.046 13.2 0.4 0.24 10.8 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ DUF1610 PF07754.11 gi|389848224|ref|YP_006350463.1| - 0.069 13.1 0.5 0.57 10.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) APS_kinase PF01583.20 gi|389848224|ref|YP_006350463.1| - 0.11 12.4 0.0 0.65 9.9 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_18 PF13238.6 gi|389848224|ref|YP_006350463.1| - 0.17 12.4 0.0 0.67 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|389848223|ref|YP_006350462.1| - 1.3e-25 90.8 0.0 2.1e-25 90.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|389848223|ref|YP_006350462.1| - 8e-14 51.7 0.0 1.4e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|389848223|ref|YP_006350462.1| - 3.4e-08 33.9 0.0 6.6e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|389848223|ref|YP_006350462.1| - 2.4e-05 24.5 0.0 4.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_CBB3 PF13442.6 gi|389848223|ref|YP_006350462.1| - 0.0035 17.6 0.2 5.5 7.4 0.0 3.6 4 1 0 4 4 4 2 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 gi|389848223|ref|YP_006350462.1| - 0.1 13.7 0.0 5.4 8.2 0.1 2.6 2 0 0 2 2 2 0 Cytochrome c NPCBM_assoc PF10633.9 gi|389848222|ref|YP_006350461.1| - 2.3e-09 37.3 13.0 0.15 12.3 0.0 6.3 5 1 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|389848222|ref|YP_006350461.1| - 5.6e-09 36.2 19.3 0.0021 18.3 0.8 5.0 4 1 0 4 4 4 3 CARDB PHTB1_C PF14728.6 gi|389848222|ref|YP_006350461.1| - 0.00015 21.0 0.1 0.63 9.1 0.0 2.9 3 0 0 3 3 3 2 PTHB1 C-terminus DUF11 PF01345.18 gi|389848222|ref|YP_006350461.1| - 0.0005 20.3 31.7 0.39 11.0 0.4 6.8 4 3 0 4 4 4 3 Domain of unknown function DUF11 FixG_C PF11614.8 gi|389848222|ref|YP_006350461.1| - 0.058 13.6 6.4 1.6 9.0 0.0 4.3 3 2 4 7 7 7 0 IG-like fold at C-terminal of FixG, putative oxidoreductase FAS_meander PF17951.1 gi|389848222|ref|YP_006350461.1| - 0.23 11.3 1.0 2.2 8.1 0.0 2.7 2 1 0 2 2 2 0 Fatty acid synthase meander beta sheet domain Ig_GlcNase PF18368.1 gi|389848222|ref|YP_006350461.1| - 0.4 10.9 3.5 4.3 7.5 0.2 3.6 4 0 0 4 4 4 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF4232 PF14016.6 gi|389848222|ref|YP_006350461.1| - 6.1 7.0 18.3 1.1 9.4 0.2 5.2 2 1 2 4 4 4 0 Protein of unknown function (DUF4232) MMPL PF03176.15 gi|389848221|ref|YP_006350460.1| - 1.8e-32 112.6 27.6 1.1e-18 67.2 8.9 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|389848221|ref|YP_006350460.1| - 1.6e-14 54.0 9.2 6.5e-08 32.5 1.6 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|389848221|ref|YP_006350460.1| - 2.4e-13 49.1 25.8 9.4e-09 33.9 5.5 2.7 2 1 0 2 2 2 2 Patched family ACR_tran PF00873.19 gi|389848221|ref|YP_006350460.1| - 1.6e-05 22.8 4.8 1.6e-05 22.8 4.8 2.1 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 gi|389848221|ref|YP_006350460.1| - 0.0002 20.8 21.1 0.029 13.8 9.1 2.6 2 0 0 2 2 2 2 Protein export membrane protein DUF2514 PF10721.9 gi|389848221|ref|YP_006350460.1| - 3.6 7.6 5.6 5.9 6.9 3.7 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2514) DZR PF12773.7 gi|389848220|ref|YP_006350459.1| - 1.6e-05 24.8 0.7 2.3e-05 24.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|389848220|ref|YP_006350459.1| - 0.00026 20.3 0.9 0.00035 19.9 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|389848220|ref|YP_006350459.1| - 0.0012 18.5 1.0 0.0018 18.0 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|389848220|ref|YP_006350459.1| - 0.0036 18.0 0.0 0.0039 17.9 0.0 1.1 1 0 0 1 1 1 1 zinc-ribbon family CpXC PF14353.6 gi|389848220|ref|YP_006350459.1| - 0.027 14.5 0.1 0.029 14.4 0.1 1.2 1 0 0 1 1 1 0 CpXC protein Sgf11 PF08209.11 gi|389848220|ref|YP_006350459.1| - 0.031 13.8 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_9 PF14369.6 gi|389848220|ref|YP_006350459.1| - 0.037 14.3 1.5 1 9.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Nudix_N_2 PF14803.6 gi|389848220|ref|YP_006350459.1| - 0.048 13.6 1.1 6.4 6.8 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal GcpE PF04551.14 gi|389848220|ref|YP_006350459.1| - 0.061 12.4 0.0 0.066 12.3 0.0 1.1 1 0 0 1 1 1 0 GcpE protein DUF555 PF04475.12 gi|389848220|ref|YP_006350459.1| - 0.093 13.1 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF555) Zn-ribbon_8 PF09723.10 gi|389848220|ref|YP_006350459.1| - 0.16 12.1 0.1 0.16 12.1 0.1 1.7 2 0 0 2 2 2 0 Zinc ribbon domain TetR_N PF00440.23 gi|389848219|ref|YP_006350458.1| - 7.9e-10 38.4 0.2 1.3e-09 37.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|389848219|ref|YP_006350458.1| - 0.00013 22.1 1.0 0.00055 20.1 0.0 2.4 4 0 0 4 4 4 1 BetI-type transcriptional repressor, C-terminal DUF2779 PF11074.8 gi|389848219|ref|YP_006350458.1| - 0.099 13.1 0.1 4 7.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function(DUF2779) Thioredoxin PF00085.20 gi|389848218|ref|YP_006350457.1| - 8e-14 51.5 0.0 8.8e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|389848218|ref|YP_006350457.1| - 6.7e-05 23.3 0.1 0.0012 19.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|389848218|ref|YP_006350457.1| - 7.7e-05 22.7 0.1 0.00012 22.1 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|389848218|ref|YP_006350457.1| - 0.0026 17.6 0.0 0.0034 17.2 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.11 gi|389848218|ref|YP_006350457.1| - 0.02 14.9 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.14 gi|389848218|ref|YP_006350457.1| - 0.024 15.0 0.0 0.034 14.5 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|389848218|ref|YP_006350457.1| - 0.047 13.1 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_5 PF13743.6 gi|389848218|ref|YP_006350457.1| - 0.17 11.6 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Ribosomal_S13 PF00416.22 gi|389848217|ref|YP_006350456.1| - 1.9e-46 157.6 2.6 2.3e-46 157.4 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|389848216|ref|YP_006350455.1| - 2.7e-12 46.2 0.5 5.3e-12 45.2 0.0 1.8 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|389848216|ref|YP_006350455.1| - 0.0018 19.2 1.2 0.0032 18.3 0.6 1.9 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4_2 PF13275.6 gi|389848216|ref|YP_006350455.1| - 0.02 14.7 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 S4 domain TyrRSs_C PF16714.5 gi|389848216|ref|YP_006350455.1| - 0.034 14.0 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain SAGA-Tad1 PF12767.7 gi|389848216|ref|YP_006350455.1| - 0.088 12.5 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit NanE PF04131.14 gi|389848216|ref|YP_006350455.1| - 0.16 11.2 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribosomal_S11 PF00411.19 gi|389848215|ref|YP_006350454.1| - 5.2e-49 165.2 2.5 7e-49 164.8 2.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|389848215|ref|YP_006350454.1| - 0.084 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|389848214|ref|YP_006350453.1| - 2e-20 73.2 0.0 1.2e-19 70.7 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|389848214|ref|YP_006350453.1| - 7e-12 44.6 0.0 8.7e-12 44.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18 PF17135.4 gi|389848213|ref|YP_006350452.1| - 4.3e-13 49.1 0.0 4.7e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|389848213|ref|YP_006350452.1| - 1.6e-06 28.8 0.4 5.7e-06 27.0 0.4 1.8 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|389848212|ref|YP_006350451.1| - 3.1e-08 33.9 0.2 3.4e-07 30.6 0.2 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|389848211|ref|YP_006350450.1| - 1.1e-31 109.8 0.1 1.3e-31 109.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|389848210|ref|YP_006350449.1| - 4.5e-28 97.3 0.3 4.9e-28 97.2 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|389848209|ref|YP_006350448.1| - 2.9e-11 43.1 0.1 3.5e-11 42.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|389848208|ref|YP_006350447.1| - 1.2e-75 254.5 0.7 1.8e-75 253.9 0.7 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|389848208|ref|YP_006350447.1| - 2.1e-35 121.8 0.4 9.6e-35 119.6 0.4 2.1 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|389848208|ref|YP_006350447.1| - 5.5e-11 42.4 0.5 1e-10 41.6 0.5 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|389848208|ref|YP_006350447.1| - 0.00019 20.7 0.1 0.00019 20.7 0.1 1.6 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus CarboxypepD_reg PF13620.6 gi|389848208|ref|YP_006350447.1| - 0.075 13.3 0.1 0.21 11.9 0.1 1.7 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Ribosomal_S2 PF00318.20 gi|389848207|ref|YP_006350446.1| - 9e-25 87.2 0.2 2.2e-14 53.2 0.6 2.2 1 1 1 2 2 2 2 Ribosomal protein S2 Rhodanese PF00581.20 gi|389848206|ref|YP_006350445.1| - 5.7e-13 49.3 0.0 1.1e-12 48.4 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|389848206|ref|YP_006350445.1| - 5.7e-10 39.5 9.0 1.5e-09 38.1 9.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389848206|ref|YP_006350445.1| - 0.0001 21.9 0.3 0.0002 20.9 0.3 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Glyoxalase_3 PF13468.6 gi|389848205|ref|YP_006350444.1| - 2.2e-27 96.3 0.6 1.8e-26 93.3 0.5 1.9 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|389848205|ref|YP_006350444.1| - 0.0001 22.5 0.0 0.0028 17.9 0.0 2.3 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Zincin_2 PF10103.9 gi|389848204|ref|YP_006350443.1| - 3.6e-61 207.3 2.2 1.2e-30 107.0 0.5 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase HHH_2 PF12826.7 gi|389848203|ref|YP_006350442.1| - 0.11 12.6 0.1 5.3 7.2 0.1 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_12 PF13087.6 gi|662859582|ref|YP_006350441.2| - 1.8e-39 135.5 0.0 2.8e-39 134.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|662859582|ref|YP_006350441.2| - 4.5e-36 125.0 0.1 2.7e-18 66.7 0.1 2.5 1 1 1 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|662859582|ref|YP_006350441.2| - 9.5e-20 71.1 3.3 2.7e-18 66.4 0.8 2.7 2 0 0 2 2 2 1 AAA domain Dna2 PF08696.11 gi|662859582|ref|YP_006350441.2| - 9.7e-20 71.2 0.0 6.7e-18 65.2 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_19 PF13245.6 gi|662859582|ref|YP_006350441.2| - 4e-15 56.4 0.2 1.4e-13 51.4 0.1 2.9 2 1 1 3 3 3 1 AAA domain PDDEXK_1 PF12705.7 gi|662859582|ref|YP_006350441.2| - 2.9e-10 40.5 0.0 8.4e-10 39.0 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|662859582|ref|YP_006350441.2| - 1.4e-08 34.8 0.0 0.016 15.0 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|662859582|ref|YP_006350441.2| - 3.4e-05 23.5 0.0 0.00015 21.4 0.0 2.0 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.17 gi|662859582|ref|YP_006350441.2| - 7e-05 23.0 0.0 0.00032 20.8 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function DUF83 AAA_16 PF13191.6 gi|662859582|ref|YP_006350441.2| - 0.00021 21.7 0.1 0.001 19.5 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain UvrD_C_2 PF13538.6 gi|662859582|ref|YP_006350441.2| - 0.00027 20.7 0.0 0.00057 19.7 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.15 gi|662859582|ref|YP_006350441.2| - 0.00057 19.9 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|662859582|ref|YP_006350441.2| - 0.0014 19.0 0.1 0.011 16.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|662859582|ref|YP_006350441.2| - 0.0018 17.6 0.0 0.0094 15.2 0.0 2.2 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.14 gi|662859582|ref|YP_006350441.2| - 0.009 15.9 0.0 0.027 14.3 0.0 1.8 1 1 0 1 1 1 1 Helicase PhoH PF02562.16 gi|662859582|ref|YP_006350441.2| - 0.01 15.3 0.0 0.048 13.1 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.29 gi|662859582|ref|YP_006350441.2| - 0.027 14.9 0.2 0.08 13.4 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|662859582|ref|YP_006350441.2| - 0.059 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|662859582|ref|YP_006350441.2| - 0.081 12.7 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PDZ_6 PF17820.1 gi|662859582|ref|YP_006350441.2| - 0.083 12.8 0.0 0.3 11.0 0.0 1.9 1 0 0 1 1 1 0 PDZ domain YflT PF11181.8 gi|662859582|ref|YP_006350441.2| - 0.083 13.4 0.1 0.48 11.0 0.1 2.3 2 0 0 2 2 2 0 Heat induced stress protein YflT PIF1 PF05970.14 gi|662859582|ref|YP_006350441.2| - 0.087 12.0 0.0 6.2 5.9 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_33 PF13671.6 gi|662859582|ref|YP_006350441.2| - 0.12 12.5 0.0 0.44 10.7 0.0 2.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|662859582|ref|YP_006350441.2| - 0.13 11.6 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Lar_N PF09861.9 gi|389848201|ref|YP_006350440.1| - 2e-35 121.8 0.0 4.3e-35 120.7 0.0 1.6 2 0 0 2 2 2 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|389848201|ref|YP_006350440.1| - 0.0022 18.2 0.0 0.0044 17.3 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF362) DEAD_assoc PF08494.11 gi|389848200|ref|YP_006350439.1| - 2.2e-52 177.6 2.6 4.4e-52 176.7 0.8 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|389848200|ref|YP_006350439.1| - 9.1e-32 110.2 0.0 2.2e-30 105.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|389848200|ref|YP_006350439.1| - 4.1e-19 69.0 0.1 1.1e-17 64.4 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|389848200|ref|YP_006350439.1| - 2.2e-08 34.3 0.0 8e-08 32.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|389848200|ref|YP_006350439.1| - 0.00057 20.2 0.1 0.0037 17.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|389848200|ref|YP_006350439.1| - 0.003 17.9 0.0 0.0084 16.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain Lactamase_B_2 PF12706.7 gi|389848199|ref|YP_006350438.1| - 9.8e-19 67.7 0.4 1.3e-18 67.3 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|389848199|ref|YP_006350438.1| - 2.4e-12 47.3 10.6 2.9e-12 47.0 3.9 2.1 1 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|389848199|ref|YP_006350438.1| - 0.13 11.6 0.1 0.24 10.8 0.1 1.4 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PDEase_II PF02112.15 gi|389848199|ref|YP_006350438.1| - 0.15 11.1 0.1 0.71 8.9 0.0 1.9 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II DUF1932 PF09130.11 gi|389848199|ref|YP_006350438.1| - 0.16 12.0 0.0 0.79 9.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) AA_kinase PF00696.28 gi|389848198|ref|YP_006350437.1| - 2.6e-38 132.0 7.4 3.1e-38 131.7 7.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family ATXN-1_C PF12547.8 gi|389848198|ref|YP_006350437.1| - 0.039 14.3 0.2 0.16 12.3 0.0 2.1 2 0 0 2 2 2 0 Capicua transcriptional repressor modulator GHMP_kinases_N PF00288.26 gi|389848197|ref|YP_006350436.1| - 1.3e-16 60.6 0.7 3.6e-16 59.2 0.3 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|389848197|ref|YP_006350436.1| - 8.4e-14 51.7 1.2 3.9e-13 49.6 0.2 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|389848197|ref|YP_006350436.1| - 0.00016 21.1 0.1 0.00031 20.2 0.1 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Delta_lysin PF05372.11 gi|389848197|ref|YP_006350436.1| - 0.023 14.0 0.1 0.041 13.2 0.1 1.4 1 0 0 1 1 1 0 Delta lysin family DUF4366 PF14283.6 gi|389848196|ref|YP_006350435.1| - 0.0092 16.0 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) DUF2173 PF09941.9 gi|389848196|ref|YP_006350435.1| - 0.042 14.2 0.1 0.062 13.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) Peptidase_M42 PF05343.14 gi|389848195|ref|YP_006350434.1| - 1.9e-78 263.5 5.5 2.2e-78 263.3 5.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M18 PF02127.15 gi|389848195|ref|YP_006350434.1| - 1.2e-07 30.9 0.2 0.00024 20.0 0.0 2.4 1 1 2 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) Ribosomal_L11 PF00298.19 gi|389848194|ref|YP_006350433.1| - 9.9e-19 67.6 0.0 1.4e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|389848194|ref|YP_006350433.1| - 6.9e-18 64.3 0.1 1.1e-17 63.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.21 gi|389848193|ref|YP_006350432.1| - 2.8e-42 144.8 0.0 3.4e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|389848192|ref|YP_006350431.1| - 1.4e-22 79.7 0.0 3.1e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|389848192|ref|YP_006350431.1| - 1.2e-15 57.2 0.0 2.1e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|389848192|ref|YP_006350431.1| - 0.00059 20.4 10.8 0.0017 18.9 10.8 1.9 1 0 0 1 1 1 1 60s Acidic ribosomal protein RNA_pol_3_Rpc31 PF11705.8 gi|389848192|ref|YP_006350431.1| - 0.084 13.1 7.8 0.14 12.4 7.8 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 PPP4R2 PF09184.11 gi|389848192|ref|YP_006350431.1| - 0.42 10.2 3.5 0.57 9.7 3.5 1.3 1 0 0 1 1 1 0 PPP4R2 Cwf_Cwc_15 PF04889.12 gi|389848192|ref|YP_006350431.1| - 1.3 8.7 6.6 2.1 8.0 6.6 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2457 PF10446.9 gi|389848192|ref|YP_006350431.1| - 2.4 7.2 15.1 3.7 6.6 15.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Ribosomal_60s PF00428.19 gi|389848191|ref|YP_006350430.1| - 8.2e-15 55.2 38.6 3.2e-14 53.3 38.6 1.8 1 1 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|389848191|ref|YP_006350430.1| - 0.047 12.3 3.7 0.054 12.0 3.7 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 DUF2868 PF11067.8 gi|389848191|ref|YP_006350430.1| - 0.082 12.4 0.9 0.1 12.1 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) CENP-T_N PF16171.5 gi|389848191|ref|YP_006350430.1| - 1.7 7.5 5.5 1.8 7.4 5.5 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T N-terminus NOA36 PF06524.12 gi|389848191|ref|YP_006350430.1| - 2.7 7.2 8.2 2.8 7.2 8.2 1.2 1 0 0 1 1 1 0 NOA36 protein DUF4746 PF15928.5 gi|389848191|ref|YP_006350430.1| - 3.3 7.0 10.1 4.1 6.7 10.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) Cytomega_UL84 PF06284.11 gi|389848191|ref|YP_006350430.1| - 3.8 5.8 6.3 4 5.8 6.3 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein CDC45 PF02724.14 gi|389848191|ref|YP_006350430.1| - 5.1 5.3 6.6 5.5 5.1 6.6 1.1 1 0 0 1 1 1 0 CDC45-like protein Paf1 PF03985.13 gi|389848191|ref|YP_006350430.1| - 6.3 5.7 7.9 6.6 5.6 7.9 1.1 1 0 0 1 1 1 0 Paf1 Myc_N PF01056.18 gi|389848191|ref|YP_006350430.1| - 8.8 6.1 7.6 11 5.8 7.6 1.2 1 0 0 1 1 1 0 Myc amino-terminal region RNA_pol_3_Rpc31 PF11705.8 gi|389848191|ref|YP_006350430.1| - 9.8 6.4 13.7 12 6.0 13.7 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 TctA PF01970.16 gi|389848190|ref|YP_006350429.1| - 3.1e-52 177.7 37.8 4.4e-52 177.2 37.8 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DUF1610 PF07754.11 gi|389848189|ref|YP_006350428.1| - 1.4e-06 28.1 8.3 6.9e-06 25.9 2.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|389848189|ref|YP_006350428.1| - 0.0025 18.3 11.5 0.027 14.9 6.2 2.0 1 1 1 2 2 2 2 CHY zinc finger DZR PF12773.7 gi|389848189|ref|YP_006350428.1| - 0.006 16.6 13.2 0.32 11.0 13.2 2.2 1 1 0 1 1 1 1 Double zinc ribbon zf-Mss51 PF13824.6 gi|389848189|ref|YP_006350428.1| - 0.0072 16.4 13.7 0.66 10.1 2.2 3.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|389848189|ref|YP_006350428.1| - 0.0092 15.9 10.0 0.036 14.0 1.0 2.3 1 1 1 2 2 2 2 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|389848189|ref|YP_006350428.1| - 0.0093 16.3 11.1 0.11 12.8 3.6 2.1 1 1 1 2 2 2 2 C1 domain zinc_ribbon_10 PF10058.9 gi|389848189|ref|YP_006350428.1| - 0.016 14.9 8.2 4.3 7.1 0.0 3.7 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Rhodanese_C PF12368.8 gi|389848189|ref|YP_006350428.1| - 0.02 15.3 10.2 0.021 15.2 10.2 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal HscB_4_cys PF18256.1 gi|389848189|ref|YP_006350428.1| - 0.026 14.3 1.6 0.026 14.3 1.6 2.9 3 0 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf_UBZ PF18439.1 gi|389848189|ref|YP_006350428.1| - 0.032 13.8 15.8 0.045 13.3 0.4 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|389848189|ref|YP_006350428.1| - 0.035 13.8 14.5 0.33 10.7 0.1 4.0 3 1 0 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|389848189|ref|YP_006350428.1| - 0.038 14.0 12.2 0.18 11.8 12.2 1.9 1 1 0 1 1 1 0 zinc-ribbons Zn_ribbon_SprT PF17283.2 gi|389848189|ref|YP_006350428.1| - 0.079 12.9 15.1 6.5 6.8 0.1 3.9 2 1 1 3 3 3 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|389848189|ref|YP_006350428.1| - 0.081 12.9 12.2 0.11 12.5 1.3 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_11 PF16622.5 gi|389848189|ref|YP_006350428.1| - 0.1 12.4 10.2 0.57 10.0 0.2 3.7 4 0 0 4 4 4 0 zinc-finger C2H2-type Zn_Tnp_IS91 PF14319.6 gi|389848189|ref|YP_006350428.1| - 0.11 12.5 11.4 0.22 11.6 11.4 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain FYVE_2 PF02318.16 gi|389848189|ref|YP_006350428.1| - 0.12 12.6 7.4 0.13 12.5 7.4 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger NMDAR2_C PF10565.9 gi|389848189|ref|YP_006350428.1| - 0.12 11.2 8.1 0.13 11.1 8.1 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus Zn-ribbon_8 PF09723.10 gi|389848189|ref|YP_006350428.1| - 0.2 11.8 15.8 0.21 11.8 10.6 2.7 1 1 2 3 3 3 0 Zinc ribbon domain zf-HIT PF04438.16 gi|389848189|ref|YP_006350428.1| - 0.22 11.4 13.9 1.4 8.8 1.7 2.7 2 2 0 2 2 2 0 HIT zinc finger Sgf11 PF08209.11 gi|389848189|ref|YP_006350428.1| - 0.23 11.1 0.5 0.23 11.1 0.5 3.7 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.22 gi|389848189|ref|YP_006350428.1| - 0.25 11.3 11.2 0.13 12.1 1.4 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PolC_DP2 PF03833.13 gi|389848189|ref|YP_006350428.1| - 0.33 8.8 7.7 0.35 8.7 7.7 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 YhfH PF14149.6 gi|389848189|ref|YP_006350428.1| - 0.47 10.5 15.8 9.8 6.3 0.1 3.4 2 1 1 3 3 3 0 YhfH-like protein zf-tcix PF14952.6 gi|389848189|ref|YP_006350428.1| - 0.51 10.0 14.3 9.5 5.9 0.0 3.4 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding PhnA_Zn_Ribbon PF08274.12 gi|389848189|ref|YP_006350428.1| - 0.57 10.2 0.2 0.57 10.2 0.2 3.4 2 1 1 4 4 3 0 PhnA Zinc-Ribbon NMD3 PF04981.13 gi|389848189|ref|YP_006350428.1| - 0.57 9.6 9.1 0.61 9.5 9.1 1.0 1 0 0 1 1 1 0 NMD3 family Rubredoxin_2 PF18073.1 gi|389848189|ref|YP_006350428.1| - 0.61 9.9 17.0 16 5.4 0.6 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-ACC PF17848.1 gi|389848189|ref|YP_006350428.1| - 0.64 10.2 0.4 0.64 10.2 0.4 3.9 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L37ae PF01780.19 gi|389848189|ref|YP_006350428.1| - 0.66 10.1 10.3 1.5e+02 2.6 10.3 2.8 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.6 gi|389848189|ref|YP_006350428.1| - 0.73 9.3 17.0 9 5.9 0.3 4.0 3 1 0 3 3 3 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|389848189|ref|YP_006350428.1| - 1.4 9.5 17.1 4.4 8.0 0.4 3.9 3 1 0 3 3 3 0 Zinc finger, C2H2 type zf-C2HC5 PF06221.13 gi|389848189|ref|YP_006350428.1| - 1.5 8.9 12.0 1.1 9.3 7.0 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type UPF0547 PF10571.9 gi|389848189|ref|YP_006350428.1| - 1.5 9.0 0.1 1.5 9.0 0.1 3.3 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 NRDD PF13597.6 gi|389848189|ref|YP_006350428.1| - 1.7 7.3 11.4 1 8.1 3.5 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-H2C2_2 PF13465.6 gi|389848189|ref|YP_006350428.1| - 2.2 8.9 16.5 3.5 8.2 0.6 4.0 2 1 2 4 4 4 0 Zinc-finger double domain zf-dskA_traR PF01258.17 gi|389848189|ref|YP_006350428.1| - 2.5 8.1 11.8 2.8 7.9 1.8 3.5 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-HYPF PF07503.12 gi|389848189|ref|YP_006350428.1| - 6.1 6.7 13.9 19 5.1 10.0 2.7 2 1 0 2 2 2 0 HypF finger EF1_GNE PF00736.19 gi|389848188|ref|YP_006350427.1| - 5.8e-18 64.9 0.1 6.4e-18 64.7 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain FUN14 PF04930.15 gi|389848187|ref|YP_006350426.1| - 0.0059 17.0 1.9 0.25 11.8 0.0 2.1 2 0 0 2 2 2 2 FUN14 family Romo1 PF10247.9 gi|389848187|ref|YP_006350426.1| - 0.076 13.4 3.3 0.076 13.4 3.3 2.2 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 SPC12 PF06645.13 gi|389848187|ref|YP_006350426.1| - 0.13 12.4 0.5 0.17 12.0 0.5 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF883 PF05957.13 gi|389848187|ref|YP_006350426.1| - 0.48 11.0 1.7 1.3 9.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2407_C PF13373.6 gi|389848187|ref|YP_006350426.1| - 1.1 9.5 5.7 7.4 6.7 5.7 1.9 1 1 0 1 1 1 0 DUF2407 C-terminal domain DUF543 PF04418.12 gi|389848187|ref|YP_006350426.1| - 1.4 9.0 5.2 13 5.8 2.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF543) Cys_Met_Meta_PP PF01053.20 gi|389848186|ref|YP_006350425.1| - 1.6e-153 510.8 0.0 1.9e-153 510.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|389848186|ref|YP_006350425.1| - 6.7e-06 25.3 0.0 1.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|389848186|ref|YP_006350425.1| - 7e-05 21.5 0.0 9.5e-05 21.1 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 gi|389848186|ref|YP_006350425.1| - 0.00033 20.1 0.0 0.003 16.9 0.0 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|389848186|ref|YP_006350425.1| - 0.00062 19.0 0.0 0.00085 18.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DUF5014 PF16406.5 gi|389848186|ref|YP_006350425.1| - 0.022 15.0 0.0 0.58 10.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5014) Ribosomal_L21e PF01157.18 gi|662859581|ref|YP_006350424.2| - 4.7e-31 106.6 0.1 5.1e-31 106.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|389848184|ref|YP_006350423.1| - 5.1e-15 55.9 2.1 6.3e-15 55.6 2.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 FliG_N PF14842.6 gi|389848184|ref|YP_006350423.1| - 0.0062 17.1 1.6 0.02 15.4 0.1 2.3 2 1 0 2 2 2 1 FliG N-terminal domain Arg_decarbox_C PF17944.1 gi|389848184|ref|YP_006350423.1| - 0.022 15.3 3.6 0.65 10.6 0.5 2.6 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Cas9_a PF18470.1 gi|389848184|ref|YP_006350423.1| - 0.032 13.8 0.3 0.12 11.9 0.0 1.8 1 1 0 2 2 2 0 Cas9 alpha-helical lobe domain Herpes_BBRF1 PF04793.12 gi|389848184|ref|YP_006350423.1| - 0.087 11.8 0.2 0.092 11.8 0.2 1.1 1 0 0 1 1 1 0 BRRF1-like protein Gluconate_2-dh3 PF13618.6 gi|389848184|ref|YP_006350423.1| - 0.11 12.7 2.1 0.6 10.4 0.4 2.4 1 1 2 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 HTH_17 PF12728.7 gi|389848184|ref|YP_006350423.1| - 0.13 12.5 0.4 2.5 8.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF655 PF04919.12 gi|389848183|ref|YP_006350422.1| - 9.1e-62 208.2 0.6 1e-61 208.0 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|389848183|ref|YP_006350422.1| - 1.2e-07 31.9 0.0 3.5e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|389848183|ref|YP_006350422.1| - 7.2e-06 26.2 0.0 6.8e-05 23.1 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|389848183|ref|YP_006350422.1| - 0.0027 17.5 0.0 0.16 11.9 0.0 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|389848183|ref|YP_006350422.1| - 0.023 15.3 4.1 0.7 10.5 0.6 3.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|389848183|ref|YP_006350422.1| - 0.099 13.0 0.1 0.52 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|389848182|ref|YP_006350421.1| - 1.1e-48 165.6 0.0 1.4e-48 165.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|389848182|ref|YP_006350421.1| - 0.00014 22.5 0.0 0.00028 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|389848182|ref|YP_006350421.1| - 0.064 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_12 PF08242.12 gi|389848182|ref|YP_006350421.1| - 0.085 13.6 0.0 0.19 12.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389848182|ref|YP_006350421.1| - 0.12 13.0 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Spermine_synth PF01564.17 gi|389848182|ref|YP_006350421.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain MS_channel PF00924.18 gi|389848181|ref|YP_006350420.1| - 1.8e-46 158.3 0.1 2.4e-46 157.9 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel UPF0182 PF03699.13 gi|389848181|ref|YP_006350420.1| - 0.19 9.8 4.1 0.051 11.7 0.6 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0182) MTS PF05175.14 gi|389848180|ref|YP_006350419.1| - 4.2e-13 49.2 0.0 6.5e-10 38.8 0.0 2.0 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|389848180|ref|YP_006350419.1| - 2.3e-11 44.3 0.1 1.3e-09 38.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389848180|ref|YP_006350419.1| - 1.3e-10 41.8 0.0 3.7e-08 33.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389848180|ref|YP_006350419.1| - 1.7e-08 35.1 0.0 1.5e-06 28.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389848180|ref|YP_006350419.1| - 2.2e-08 34.0 0.0 2.8e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389848180|ref|YP_006350419.1| - 1.1e-06 28.6 0.0 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389848180|ref|YP_006350419.1| - 2.4e-05 23.8 0.0 0.01 15.2 0.0 2.1 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|389848180|ref|YP_006350419.1| - 0.0053 16.2 0.1 0.012 15.0 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|389848180|ref|YP_006350419.1| - 0.0073 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AlaDh_PNT_C PF01262.21 gi|389848180|ref|YP_006350419.1| - 0.0085 15.4 0.1 0.011 15.0 0.1 1.1 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UPF0146 PF03686.13 gi|389848180|ref|YP_006350419.1| - 0.012 15.5 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Cons_hypoth95 PF03602.15 gi|389848180|ref|YP_006350419.1| - 0.016 14.8 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_4 PF02390.17 gi|389848180|ref|YP_006350419.1| - 0.022 14.2 0.0 0.37 10.2 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.6 gi|389848180|ref|YP_006350419.1| - 0.031 14.3 0.0 0.041 13.9 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|389848180|ref|YP_006350419.1| - 0.032 14.1 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|389848180|ref|YP_006350419.1| - 0.042 13.5 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF1269 PF06897.12 gi|389848180|ref|YP_006350419.1| - 0.075 13.3 0.2 0.55 10.5 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1269) CMAS PF02353.20 gi|389848180|ref|YP_006350419.1| - 0.1 11.9 0.0 0.37 10.0 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Meth_synt_1 PF08267.12 gi|389848179|ref|YP_006350418.1| - 1.5e-13 51.0 0.0 4.5e-13 49.4 0.0 1.6 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|389848179|ref|YP_006350418.1| - 8.7e-10 38.4 0.0 0.00069 19.0 0.0 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.18 gi|389848178|ref|YP_006350417.1| - 1.4e-57 195.4 0.0 2e-57 194.9 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|389848178|ref|YP_006350417.1| - 2.2e-12 47.1 0.0 3.9e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|389848178|ref|YP_006350417.1| - 7.9e-07 28.5 0.0 1.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) SnoaL PF07366.12 gi|389848177|ref|YP_006350416.1| - 7.4e-32 109.8 0.3 9.2e-32 109.5 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|389848177|ref|YP_006350416.1| - 4.5e-17 62.6 3.2 5.6e-17 62.3 3.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain PHZA_PHZB PF03284.13 gi|389848177|ref|YP_006350416.1| - 0.00021 21.0 0.0 0.00025 20.7 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis protein A/B NDK PF00334.19 gi|389848176|ref|YP_006350415.1| - 2.4e-56 189.5 0.0 2.7e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|389848175|ref|YP_006350414.1| - 1.9e-21 76.0 0.0 2e-21 76.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e Ribosomal_S28e PF01200.18 gi|389848174|ref|YP_006350413.1| - 1.4e-28 98.7 0.7 1.5e-28 98.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|389848173|ref|YP_006350412.1| - 6.7e-25 86.7 0.0 7.8e-25 86.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|389848173|ref|YP_006350412.1| - 0.00018 21.3 0.0 0.00025 20.9 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.12 gi|389848173|ref|YP_006350412.1| - 0.0004 20.6 0.9 0.091 13.1 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1269) Helicase_RecD PF05127.14 gi|389848172|ref|YP_006350411.1| - 1.1e-47 162.1 0.0 1.8e-47 161.4 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|389848172|ref|YP_006350411.1| - 2.4e-43 148.1 0.0 5.6e-26 91.3 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|389848172|ref|YP_006350411.1| - 1.1e-25 89.4 0.0 9.4e-25 86.4 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|389848172|ref|YP_006350411.1| - 6.8e-08 32.4 1.7 1.5e-07 31.3 1.7 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_10 PF13673.7 gi|389848172|ref|YP_006350411.1| - 0.0011 18.8 0.0 0.0091 15.9 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848172|ref|YP_006350411.1| - 0.01 16.3 0.0 0.026 14.9 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 gi|389848172|ref|YP_006350411.1| - 1.2 9.5 4.7 1.2 9.5 1.5 2.7 2 2 1 3 3 3 0 AAA ATPase domain DUF4350 PF14258.6 gi|389848172|ref|YP_006350411.1| - 8.9 6.8 9.6 7.4 7.1 0.2 4.1 5 0 0 5 5 5 0 Domain of unknown function (DUF4350) Acetyltransf_1 PF00583.25 gi|389848170|ref|YP_006350409.1| - 1.4e-15 57.6 0.1 2.1e-15 57.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|389848170|ref|YP_006350409.1| - 3.5e-10 40.2 0.0 4.9e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389848170|ref|YP_006350409.1| - 2.4e-07 30.7 0.0 3.6e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848170|ref|YP_006350409.1| - 2.9e-07 30.8 0.0 5.4e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389848170|ref|YP_006350409.1| - 7.4e-05 22.8 0.0 0.00018 21.5 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|389848170|ref|YP_006350409.1| - 0.00023 21.9 0.1 0.00036 21.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389848170|ref|YP_006350409.1| - 0.0013 18.8 0.0 0.0023 18.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|389848170|ref|YP_006350409.1| - 0.053 13.7 0.1 0.11 12.7 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain LexA_DNA_bind PF01726.16 gi|389848170|ref|YP_006350409.1| - 0.08 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.19 gi|389848170|ref|YP_006350409.1| - 0.1 12.8 0.0 0.39 11.0 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PAC2 PF09754.9 gi|389848170|ref|YP_006350409.1| - 0.12 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 PAC2 family FAD_binding_3 PF01494.19 gi|389848167|ref|YP_006350406.1| - 1e-10 41.4 2.6 0.00014 21.2 0.1 2.7 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|389848167|ref|YP_006350406.1| - 1.9e-06 27.5 0.1 3.1e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|389848167|ref|YP_006350406.1| - 3.6e-06 26.8 4.8 0.01 15.4 0.9 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389848167|ref|YP_006350406.1| - 4.6e-06 26.1 4.5 0.0055 16.0 1.4 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389848167|ref|YP_006350406.1| - 0.00021 21.5 0.6 0.00087 19.5 0.6 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|389848167|ref|YP_006350406.1| - 0.00066 18.5 2.2 0.0019 16.9 1.3 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|389848167|ref|YP_006350406.1| - 0.00074 18.8 0.1 0.0014 17.9 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|389848167|ref|YP_006350406.1| - 0.0017 17.5 6.0 0.0028 16.8 2.8 2.1 1 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|389848167|ref|YP_006350406.1| - 0.0024 17.2 1.2 0.0056 16.0 1.2 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389848167|ref|YP_006350406.1| - 0.034 14.7 4.0 1.7 9.2 1.0 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ETF_QO PF05187.13 gi|389848167|ref|YP_006350406.1| - 0.043 13.9 0.1 0.077 13.1 0.1 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S GIDA PF01134.22 gi|389848167|ref|YP_006350406.1| - 0.092 11.8 6.1 0.14 11.2 3.2 2.3 3 0 0 3 3 3 0 Glucose inhibited division protein A Fer4_7 PF12838.7 gi|389848167|ref|YP_006350406.1| - 0.1 13.2 1.3 0.21 12.2 1.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|389848167|ref|YP_006350406.1| - 0.12 12.5 1.0 0.33 11.1 1.0 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain ETF_alpha PF00766.19 gi|389848166|ref|YP_006350405.1| - 2.2e-26 91.7 0.9 5.3e-26 90.5 0.9 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|389848166|ref|YP_006350405.1| - 1.3e-15 57.7 0.0 5e-15 55.9 0.0 2.0 2 1 0 2 2 2 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|662859580|ref|YP_006350404.2| - 1e-38 133.1 0.0 1.4e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_7 PF12838.7 gi|389848164|ref|YP_006350403.1| - 6e-12 46.0 21.3 2.2e-06 28.2 8.2 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389848164|ref|YP_006350403.1| - 1.2e-11 43.9 12.3 7.7e-08 31.8 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|389848164|ref|YP_006350403.1| - 3.8e-08 33.4 4.3 5.9e-08 32.8 4.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389848164|ref|YP_006350403.1| - 1e-06 28.7 18.0 6.9e-05 22.9 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|389848164|ref|YP_006350403.1| - 1.9e-06 27.7 13.4 2.1e-05 24.4 5.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|389848164|ref|YP_006350403.1| - 3.1e-06 27.6 1.1 0.012 16.1 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|389848164|ref|YP_006350403.1| - 4.2e-06 26.8 11.4 4.6e-05 23.5 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389848164|ref|YP_006350403.1| - 7.6e-06 26.8 4.1 0.00036 21.4 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|389848164|ref|YP_006350403.1| - 1.9e-05 25.1 1.0 0.042 14.4 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|389848164|ref|YP_006350403.1| - 0.00015 21.7 9.7 0.0038 17.2 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389848164|ref|YP_006350403.1| - 0.00073 19.7 1.1 0.00073 19.7 1.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389848164|ref|YP_006350403.1| - 0.0015 18.9 2.5 0.0015 18.9 2.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|389848164|ref|YP_006350403.1| - 0.0029 18.4 4.1 0.0029 18.4 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|389848164|ref|YP_006350403.1| - 0.048 14.2 15.9 0.23 12.0 13.6 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF456 PF04306.13 gi|389848163|ref|YP_006350402.1| - 1.2e-28 100.1 20.6 1.2e-28 100.1 20.6 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF456) DUF4870 PF09685.10 gi|389848163|ref|YP_006350402.1| - 5.2 7.2 11.3 0.15 12.2 0.5 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4870) Cyclase PF04199.13 gi|389848162|ref|YP_006350401.1| - 3.9e-19 69.2 0.0 5.6e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase tRNA-synt_1c PF00749.21 gi|389848161|ref|YP_006350400.1| - 7.2e-59 199.2 0.0 9.9e-59 198.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|389848161|ref|YP_006350400.1| - 1.6e-17 64.0 0.0 5.4e-17 62.2 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.17 gi|389848160|ref|YP_006350399.1| - 3e-65 219.8 0.1 3.7e-65 219.5 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B_2 PF12706.7 gi|389848159|ref|YP_006350398.1| - 8.9e-09 35.2 2.6 2.1e-07 30.6 0.3 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|389848159|ref|YP_006350398.1| - 4e-07 30.2 4.3 4.2e-07 30.2 2.4 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|389848159|ref|YP_006350398.1| - 0.00048 20.0 1.8 0.011 15.6 0.2 2.9 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain LSM PF01423.22 gi|389848158|ref|YP_006350397.1| - 1.8e-16 59.5 0.0 2.2e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|389848158|ref|YP_006350397.1| - 7.6e-08 32.4 0.0 8.4e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|389848157|ref|YP_006350396.1| - 3.6e-22 78.3 14.0 3.9e-22 78.2 14.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|389848157|ref|YP_006350396.1| - 0.012 15.6 2.6 0.017 15.1 2.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-piccolo PF05715.13 gi|389848157|ref|YP_006350396.1| - 0.043 14.0 4.1 0.12 12.5 4.1 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|389848157|ref|YP_006350396.1| - 0.064 13.5 9.2 0.092 13.0 8.7 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family zinc_ribbon_2 PF13240.6 gi|389848157|ref|YP_006350396.1| - 0.11 12.3 6.1 0.58 9.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|389848157|ref|YP_006350396.1| - 0.11 12.5 2.7 0.13 12.3 2.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|389848157|ref|YP_006350396.1| - 0.7 9.4 5.2 7.6 6.1 4.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|389848157|ref|YP_006350396.1| - 0.7 9.8 5.9 1.2 9.0 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit YhfH PF14149.6 gi|389848157|ref|YP_006350396.1| - 1.4 8.9 7.0 2.1 8.4 0.6 2.2 1 1 1 2 2 2 0 YhfH-like protein Rubredoxin_2 PF18073.1 gi|389848157|ref|YP_006350396.1| - 2.1 8.1 8.3 7.7 6.3 2.4 2.4 2 1 0 2 2 2 0 Rubredoxin metal binding domain GATase_7 PF13537.6 gi|389848156|ref|YP_006350395.1| - 3.3e-21 75.5 0.0 6e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|389848156|ref|YP_006350395.1| - 2.5e-19 69.8 0.0 4.8e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|389848156|ref|YP_006350395.1| - 8.9e-06 24.8 0.0 1.6e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|389848156|ref|YP_006350395.1| - 2.2e-05 24.0 0.0 4.9e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF420 PF04238.12 gi|389848155|ref|YP_006350394.1| - 1.7e-37 128.6 10.4 1.7e-37 128.6 10.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|389848155|ref|YP_006350394.1| - 0.0011 19.3 2.4 0.0011 19.3 2.4 2.4 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) DUF3995 PF13160.6 gi|389848155|ref|YP_006350394.1| - 0.011 16.1 4.8 0.011 16.1 4.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) DUF4149 PF13664.6 gi|389848155|ref|YP_006350394.1| - 0.048 14.0 11.2 1 9.7 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) DUF1240 PF06836.12 gi|389848155|ref|YP_006350394.1| - 1.8 9.1 8.4 0.095 13.2 1.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) HKR_ArcB_TM PF18415.1 gi|389848155|ref|YP_006350394.1| - 6.9 7.5 12.1 0.71 10.7 0.6 3.3 3 0 0 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain HTH_3 PF01381.22 gi|389848154|ref|YP_006350393.1| - 0.00011 22.1 0.3 0.00017 21.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 gi|389848154|ref|YP_006350393.1| - 0.00022 21.0 2.7 0.00039 20.2 1.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|389848154|ref|YP_006350393.1| - 0.00058 20.1 2.1 0.00058 20.1 2.1 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|389848154|ref|YP_006350393.1| - 0.0011 18.9 0.1 0.0017 18.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|389848154|ref|YP_006350393.1| - 0.042 14.0 0.5 0.078 13.1 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|389848154|ref|YP_006350393.1| - 0.058 13.3 0.3 0.12 12.3 0.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|389848154|ref|YP_006350393.1| - 1 9.4 4.2 5.6 7.0 4.2 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon tRNA-synt_2c PF01411.19 gi|389848153|ref|YP_006350392.1| - 5.9e-12 44.9 0.1 9.1e-12 44.3 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|389848153|ref|YP_006350392.1| - 6.5e-12 45.3 0.2 1.6e-11 44.1 0.2 1.7 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|389848153|ref|YP_006350392.1| - 8.8e-12 45.6 1.8 1.5e-11 44.9 1.8 1.4 1 0 0 1 1 1 1 DHHA1 domain DegS PF05384.11 gi|389848153|ref|YP_006350392.1| - 0.22 11.0 0.1 0.39 10.2 0.1 1.3 1 0 0 1 1 1 0 Sensor protein DegS Acyl-CoA_dh_1 PF00441.24 gi|389848152|ref|YP_006350391.1| - 2.2e-51 174.0 0.9 3.7e-51 173.3 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|389848152|ref|YP_006350391.1| - 3.2e-35 121.2 1.5 4.7e-35 120.6 0.6 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|389848152|ref|YP_006350391.1| - 1.4e-24 86.9 2.8 3.2e-24 85.7 2.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389848152|ref|YP_006350391.1| - 6.8e-22 77.5 0.0 1.4e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_ox_N PF14749.6 gi|389848152|ref|YP_006350391.1| - 0.13 12.9 0.0 0.3 11.7 0.0 1.6 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal HAD_2 PF13419.6 gi|389848151|ref|YP_006350390.1| - 5e-16 59.3 0.0 1.4e-14 54.5 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389848151|ref|YP_006350390.1| - 2.2e-06 28.1 2.3 0.001 19.4 2.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389848151|ref|YP_006350390.1| - 0.0001 22.3 0.1 0.00023 21.2 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|389848151|ref|YP_006350390.1| - 0.062 13.7 3.7 0.42 11.0 3.7 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase zf-ribbon_3 PF13248.6 gi|662859579|ref|YP_006350389.2| - 0.045 13.2 0.5 0.081 12.4 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|662859579|ref|YP_006350389.2| - 0.049 13.3 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|662859579|ref|YP_006350389.2| - 0.12 12.7 0.1 0.24 11.8 0.1 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|662859579|ref|YP_006350389.2| - 0.17 11.7 0.3 0.46 10.3 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein RtcB PF01139.17 gi|662859578|ref|YP_006350388.2| - 2.1e-156 521.3 0.0 2.4e-156 521.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Archease PF01951.16 gi|662859577|ref|YP_006350387.2| - 2.8e-36 124.8 0.3 3.1e-36 124.6 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Acetyltransf_10 PF13673.7 gi|662859576|ref|YP_006350386.2| - 3.4e-13 49.6 0.0 4.2e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|662859576|ref|YP_006350386.2| - 9.2e-12 45.2 0.3 1.9e-11 44.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|662859576|ref|YP_006350386.2| - 1.4e-11 44.7 0.0 1.9e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|662859576|ref|YP_006350386.2| - 8.6e-11 41.7 0.0 1.7e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|662859576|ref|YP_006350386.2| - 0.00056 20.0 0.0 0.093 12.8 0.0 2.3 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|662859576|ref|YP_006350386.2| - 0.00063 19.9 0.1 0.0015 18.6 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|662859576|ref|YP_006350386.2| - 0.053 13.7 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AP_endonuc_2 PF01261.24 gi|389848146|ref|YP_006350385.1| - 2.7e-33 115.2 2.8 3.7e-33 114.7 2.8 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|389848146|ref|YP_006350385.1| - 1.3e-20 72.8 0.1 4.5e-20 71.1 0.1 2.0 2 0 0 2 2 2 1 AP endonuclease family 2 C terminus DpaA_N PF16924.5 gi|389848146|ref|YP_006350385.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF3122 PF11320.8 gi|389848146|ref|YP_006350385.1| - 0.12 12.5 0.0 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) GFO_IDH_MocA PF01408.22 gi|389848145|ref|YP_006350384.1| - 5.8e-18 65.9 0.0 1.1e-17 64.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|389848145|ref|YP_006350384.1| - 9e-14 51.5 0.8 8.5e-13 48.3 0.2 2.7 2 1 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|389848145|ref|YP_006350384.1| - 0.0006 19.5 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative oxidoreductase C terminal domain Sacchrp_dh_NADP PF03435.18 gi|389848145|ref|YP_006350384.1| - 0.021 15.1 0.0 0.051 13.8 0.0 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|389848145|ref|YP_006350384.1| - 0.12 13.0 0.0 0.24 12.1 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain IF-2B PF01008.17 gi|389848144|ref|YP_006350383.1| - 5.4e-45 153.8 0.1 6.2e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.22 gi|389848144|ref|YP_006350383.1| - 0.049 13.6 0.1 0.19 11.7 0.1 2.0 1 0 0 1 1 1 0 DeoR C terminal sensor domain THDPS_N_2 PF14805.6 gi|389848144|ref|YP_006350383.1| - 0.08 13.2 3.6 0.17 12.1 0.9 2.4 1 1 1 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal FKBP_N PF01346.18 gi|389848144|ref|YP_006350383.1| - 0.098 13.6 0.1 0.23 12.5 0.1 1.7 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Pantoate_transf PF02548.15 gi|389848142|ref|YP_006350381.1| - 3.2e-100 334.8 1.4 3.6e-100 334.6 1.4 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|389848142|ref|YP_006350381.1| - 4.1e-05 23.1 2.5 0.00025 20.6 2.4 2.2 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Abhydrolase_6 PF12697.7 gi|389848141|ref|YP_006350380.1| - 1.6e-21 77.9 7.6 1.9e-21 77.7 7.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848141|ref|YP_006350380.1| - 7.7e-19 68.3 0.2 9.9e-11 41.8 0.5 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389848141|ref|YP_006350380.1| - 1.4e-17 63.8 0.5 2.8e-17 62.8 0.5 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|389848141|ref|YP_006350380.1| - 0.00035 20.7 0.0 0.00067 19.7 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Thioesterase PF00975.20 gi|389848141|ref|YP_006350380.1| - 0.00042 20.5 0.0 0.00053 20.2 0.0 1.4 1 1 0 1 1 1 1 Thioesterase domain FSH1 PF03959.13 gi|389848141|ref|YP_006350380.1| - 0.00095 18.9 0.0 0.025 14.2 0.0 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Abhydrolase_5 PF12695.7 gi|389848141|ref|YP_006350380.1| - 0.017 14.9 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|389848141|ref|YP_006350380.1| - 0.048 13.4 0.2 12 5.5 0.0 2.4 2 1 0 2 2 2 0 PGAP1-like protein Esterase PF00756.20 gi|389848141|ref|YP_006350380.1| - 0.078 12.6 1.7 0.12 12.0 1.0 1.9 2 1 0 2 2 2 0 Putative esterase HSP20 PF00011.21 gi|389848140|ref|YP_006350379.1| - 0.036 14.2 0.5 2 8.6 0.5 2.1 1 1 0 1 1 1 0 Hsp20/alpha crystallin family NERD PF08378.11 gi|389848140|ref|YP_006350379.1| - 0.085 13.3 0.0 0.091 13.2 0.0 1.1 1 0 0 1 1 1 0 Nuclease-related domain AAA PF00004.29 gi|389848139|ref|YP_006350378.1| - 4e-98 325.0 0.0 5.1e-48 162.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|389848139|ref|YP_006350378.1| - 8.8e-29 99.1 6.8 1.3e-15 56.9 1.3 3.2 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|389848139|ref|YP_006350378.1| - 2.4e-24 85.3 0.0 1e-23 83.3 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|389848139|ref|YP_006350378.1| - 4.9e-17 62.6 0.1 2.5e-07 31.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|389848139|ref|YP_006350378.1| - 5.8e-16 58.6 0.0 1.7e-07 31.1 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|389848139|ref|YP_006350378.1| - 5e-14 53.0 0.9 4e-06 27.3 0.1 4.2 3 2 0 3 3 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|389848139|ref|YP_006350378.1| - 1.7e-13 50.1 0.3 3.7e-13 49.1 0.3 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|389848139|ref|YP_006350378.1| - 2.7e-11 43.6 0.5 0.00053 20.0 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|389848139|ref|YP_006350378.1| - 6.5e-11 42.0 0.3 0.00016 21.0 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|389848139|ref|YP_006350378.1| - 1.3e-10 41.6 0.0 0.0011 19.2 0.0 3.2 3 1 0 3 3 2 2 AAA domain AAA_22 PF13401.6 gi|389848139|ref|YP_006350378.1| - 2.6e-10 40.7 0.6 0.0028 17.9 0.0 3.8 3 2 1 4 4 3 2 AAA domain AAA_14 PF13173.6 gi|389848139|ref|YP_006350378.1| - 1.9e-09 37.7 0.0 0.0021 18.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|389848139|ref|YP_006350378.1| - 1.1e-07 31.8 0.0 0.0042 16.8 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|389848139|ref|YP_006350378.1| - 1.8e-07 31.5 0.0 0.03 14.7 0.0 2.7 2 1 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|389848139|ref|YP_006350378.1| - 2.5e-07 30.4 0.0 0.026 14.0 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|389848139|ref|YP_006350378.1| - 2.6e-07 30.5 0.0 0.018 14.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|389848139|ref|YP_006350378.1| - 2.9e-07 31.1 0.0 0.042 14.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|389848139|ref|YP_006350378.1| - 7.5e-07 28.7 1.9 0.012 15.1 0.0 2.7 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|389848139|ref|YP_006350378.1| - 1.9e-06 27.6 1.3 1.9 8.0 0.0 4.6 4 1 0 4 4 4 1 AAA domain AAA_28 PF13521.6 gi|389848139|ref|YP_006350378.1| - 5.2e-06 26.8 0.0 0.089 13.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain DUF815 PF05673.13 gi|389848139|ref|YP_006350378.1| - 5.7e-06 25.7 0.0 0.016 14.4 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|389848139|ref|YP_006350378.1| - 1e-05 25.3 0.0 0.15 11.8 0.0 2.7 2 1 0 2 2 2 2 Sigma-54 interaction domain DUF2075 PF09848.9 gi|389848139|ref|YP_006350378.1| - 1.7e-05 24.2 0.0 0.061 12.5 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) TsaE PF02367.17 gi|389848139|ref|YP_006350378.1| - 1.7e-05 24.8 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|389848139|ref|YP_006350378.1| - 1.9e-05 24.2 0.1 0.08 12.4 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.27 gi|389848139|ref|YP_006350378.1| - 2.4e-05 24.9 0.0 0.39 11.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|389848139|ref|YP_006350378.1| - 2.4e-05 24.3 0.1 1.2 9.0 0.0 3.8 3 1 1 4 4 4 2 NACHT domain AAA_30 PF13604.6 gi|389848139|ref|YP_006350378.1| - 3.1e-05 23.8 0.0 0.24 11.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|389848139|ref|YP_006350378.1| - 3.2e-05 23.8 0.0 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|389848139|ref|YP_006350378.1| - 4.1e-05 23.5 0.8 0.17 11.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain NB-ARC PF00931.22 gi|389848139|ref|YP_006350378.1| - 5.3e-05 22.5 0.0 0.33 10.1 0.0 2.9 3 0 0 3 3 3 2 NB-ARC domain Zeta_toxin PF06414.12 gi|389848139|ref|YP_006350378.1| - 7.4e-05 22.1 0.7 0.47 9.7 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin Bac_DnaA PF00308.18 gi|389848139|ref|YP_006350378.1| - 0.0001 22.2 0.0 0.06 13.2 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein ATPase PF06745.13 gi|389848139|ref|YP_006350378.1| - 0.00015 21.2 0.8 0.9 8.8 0.0 3.5 3 1 1 4 4 4 2 KaiC Parvo_NS1 PF01057.17 gi|389848139|ref|YP_006350378.1| - 0.00023 20.4 0.1 0.68 9.0 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|389848139|ref|YP_006350378.1| - 0.00062 20.1 0.9 2 8.7 0.0 2.8 2 1 1 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|389848139|ref|YP_006350378.1| - 0.00064 19.7 0.0 0.51 10.2 0.0 3.3 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|389848139|ref|YP_006350378.1| - 0.00077 19.9 0.0 1.8 9.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|389848139|ref|YP_006350378.1| - 0.00081 19.3 0.5 2.6 7.9 0.0 3.3 3 1 0 3 3 2 2 NTPase Vps4_C PF09336.10 gi|389848139|ref|YP_006350378.1| - 0.001 19.0 0.1 0.94 9.5 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain T2SSE PF00437.20 gi|389848139|ref|YP_006350378.1| - 0.0035 16.4 0.0 0.66 9.0 0.0 2.7 2 0 0 2 2 2 1 Type II/IV secretion system protein TniB PF05621.11 gi|389848139|ref|YP_006350378.1| - 0.0035 16.8 0.0 11 5.4 0.0 3.6 3 1 0 4 4 3 0 Bacterial TniB protein Sigma54_activ_2 PF14532.6 gi|389848139|ref|YP_006350378.1| - 0.0045 17.1 0.0 4.2 7.5 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain ResIII PF04851.15 gi|389848139|ref|YP_006350378.1| - 0.011 15.7 0.0 1.9 8.5 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|389848139|ref|YP_006350378.1| - 0.02 14.5 0.0 1.1 8.9 0.0 2.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AFG1_ATPase PF03969.16 gi|389848139|ref|YP_006350378.1| - 0.022 13.7 0.0 2.7 6.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Cytidylate_kin PF02224.18 gi|389848139|ref|YP_006350378.1| - 0.028 14.1 0.1 4.9 6.8 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase Rad17 PF03215.15 gi|389848139|ref|YP_006350378.1| - 0.04 13.8 0.0 12 5.7 0.0 2.5 2 0 0 2 2 2 0 Rad17 P-loop domain CPT PF07931.12 gi|389848139|ref|YP_006350378.1| - 0.079 12.8 0.0 4.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|389848139|ref|YP_006350378.1| - 0.083 13.0 0.0 3.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Torsin Hydin_ADK PF17213.3 gi|389848139|ref|YP_006350378.1| - 0.096 13.0 0.3 3 8.1 0.0 2.6 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain KAP_NTPase PF07693.14 gi|389848139|ref|YP_006350378.1| - 0.11 11.7 0.1 2.3 7.3 0.0 2.7 2 2 1 3 3 3 0 KAP family P-loop domain AAA_29 PF13555.6 gi|389848139|ref|YP_006350378.1| - 0.11 12.2 0.0 22 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Cytidylate_kin2 PF13189.6 gi|389848139|ref|YP_006350378.1| - 0.13 12.4 0.6 4.7 7.3 0.0 2.6 3 0 0 3 3 2 0 Cytidylate kinase-like family PIF1 PF05970.14 gi|389848139|ref|YP_006350378.1| - 0.19 10.9 0.0 8.9 5.4 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase AhpC-TSA PF00578.21 gi|389848138|ref|YP_006350377.1| - 9.3e-38 128.9 0.0 1.1e-37 128.7 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|389848138|ref|YP_006350377.1| - 1.3e-23 83.4 0.0 1.4e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|389848138|ref|YP_006350377.1| - 5e-06 26.5 0.0 6.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|389848138|ref|YP_006350377.1| - 0.00039 20.0 0.0 0.00042 19.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|389848138|ref|YP_006350377.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Holin_BhlA PF10960.8 gi|389848137|ref|YP_006350376.1| - 0.12 12.4 3.1 0.22 11.5 0.2 2.2 1 1 1 2 2 2 0 BhlA holin family DNA_primase_S PF01896.19 gi|389848136|ref|YP_006350375.1| - 2e-23 83.4 0.0 2.9e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 DNA primase small subunit Aldo_ket_red PF00248.21 gi|389848135|ref|YP_006350374.1| - 0.16 11.1 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 Aldo/keto reductase family SBP_bac_8 PF13416.6 gi|389848134|ref|YP_006350373.1| - 2.4e-15 57.1 1.8 3.4e-15 56.6 0.1 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848134|ref|YP_006350373.1| - 8.2e-06 25.5 3.4 1.8e-05 24.4 3.4 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence K_channel_TID PF07941.11 gi|389848134|ref|YP_006350373.1| - 2.5 8.6 5.2 8.2 7.0 5.2 1.8 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain BPD_transp_1 PF00528.22 gi|389848133|ref|YP_006350372.1| - 1.4e-16 60.7 20.5 1.4e-16 60.7 20.5 2.7 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848132|ref|YP_006350371.1| - 8.9e-10 38.6 19.3 8.9e-10 38.6 19.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|389848131|ref|YP_006350370.1| - 3.1e-32 112.0 0.0 5.6e-32 111.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|389848131|ref|YP_006350370.1| - 8.5e-12 45.7 0.0 3.6e-11 43.7 0.0 2.2 2 0 0 2 2 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|389848131|ref|YP_006350370.1| - 7.9e-07 29.2 0.0 0.0069 16.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848131|ref|YP_006350370.1| - 3.6e-06 26.6 0.2 2.7e-05 23.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389848131|ref|YP_006350370.1| - 0.00029 20.6 0.0 0.047 13.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|389848131|ref|YP_006350370.1| - 0.00055 19.9 0.0 0.00078 19.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|389848131|ref|YP_006350370.1| - 0.0031 17.2 0.1 0.014 15.1 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain TOBE_2 PF08402.10 gi|389848131|ref|YP_006350370.1| - 0.0033 17.6 0.1 0.047 13.8 0.1 2.5 1 1 0 1 1 1 1 TOBE domain AAA_22 PF13401.6 gi|389848131|ref|YP_006350370.1| - 0.0047 17.2 0.5 0.015 15.6 0.1 1.9 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|389848131|ref|YP_006350370.1| - 0.011 15.6 0.1 0.032 14.1 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|389848131|ref|YP_006350370.1| - 0.016 15.6 0.8 0.09 13.2 0.8 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|389848131|ref|YP_006350370.1| - 0.017 15.1 0.0 0.036 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|389848131|ref|YP_006350370.1| - 0.017 15.5 0.0 0.036 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain CysA_C_terminal PF17850.1 gi|389848131|ref|YP_006350370.1| - 0.024 15.2 0.0 0.17 12.5 0.0 2.5 2 0 0 2 2 2 0 CysA C-terminal regulatory domain RNA_helicase PF00910.22 gi|389848131|ref|YP_006350370.1| - 0.043 14.2 0.0 0.095 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|389848131|ref|YP_006350370.1| - 0.046 14.2 0.0 0.086 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|389848131|ref|YP_006350370.1| - 0.074 13.6 0.0 0.47 11.0 0.0 2.5 3 1 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|389848131|ref|YP_006350370.1| - 0.079 13.1 0.2 1.7 8.8 0.1 2.8 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|389848131|ref|YP_006350370.1| - 0.08 13.2 0.4 0.3 11.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|389848131|ref|YP_006350370.1| - 0.11 12.0 0.0 0.45 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.22 gi|389848129|ref|YP_006350368.1| - 1.2e-25 90.6 0.0 2e-25 89.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|389848129|ref|YP_006350368.1| - 5.2e-08 32.5 0.0 1.2e-07 31.3 0.0 1.6 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 gi|389848129|ref|YP_006350368.1| - 6.9e-08 32.5 1.3 2.4e-07 30.8 0.0 2.3 3 0 0 3 3 3 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|389848129|ref|YP_006350368.1| - 1.3e-06 28.9 0.0 2.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|389848129|ref|YP_006350368.1| - 2.6e-05 23.9 0.0 4.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|389848129|ref|YP_006350368.1| - 5.9e-05 23.3 0.0 0.00014 22.1 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.19 gi|389848129|ref|YP_006350368.1| - 0.00034 21.2 0.0 0.00071 20.2 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|389848129|ref|YP_006350368.1| - 0.04 14.3 0.2 0.1 13.0 0.2 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|389848129|ref|YP_006350368.1| - 0.048 14.3 0.1 0.094 13.4 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|389848129|ref|YP_006350368.1| - 0.14 12.6 0.1 0.39 11.2 0.1 1.7 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Shikimate_DH PF01488.20 gi|389848129|ref|YP_006350368.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|389848129|ref|YP_006350368.1| - 0.22 11.8 0.7 1.2 9.4 0.7 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain TF_Zn_Ribbon PF08271.12 gi|389848128|ref|YP_006350367.1| - 0.089 12.3 11.1 0.25 10.9 0.4 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding Regulator_TrmB PF11495.8 gi|389848127|ref|YP_006350366.1| - 3.7e-74 248.8 0.5 6.6e-74 248.0 0.5 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|389848127|ref|YP_006350366.1| - 3.1e-21 75.0 0.0 6.5e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389848127|ref|YP_006350366.1| - 6.8e-07 29.1 0.1 1.9e-06 27.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|389848127|ref|YP_006350366.1| - 4.1e-06 26.8 0.1 1.5e-05 25.0 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389848127|ref|YP_006350366.1| - 9e-05 22.2 0.1 0.00022 20.9 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389848127|ref|YP_006350366.1| - 0.00044 19.7 0.0 0.0029 17.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|389848127|ref|YP_006350366.1| - 0.0021 17.5 0.0 0.0068 15.9 0.0 1.8 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|389848127|ref|YP_006350366.1| - 0.0029 17.9 0.0 0.0067 16.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator GCR1_C PF12550.8 gi|389848127|ref|YP_006350366.1| - 0.009 16.3 0.0 0.029 14.7 0.0 1.8 2 0 0 2 2 2 1 Transcriptional activator of glycolytic enzymes HTH_5 PF01022.20 gi|389848127|ref|YP_006350366.1| - 0.014 15.3 0.0 0.045 13.6 0.0 1.9 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family HTH_9 PF08221.11 gi|389848127|ref|YP_006350366.1| - 0.036 14.1 0.0 0.21 11.7 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848127|ref|YP_006350366.1| - 0.042 13.8 0.0 0.092 12.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|389848127|ref|YP_006350366.1| - 0.046 13.2 0.2 1.5 8.4 0.0 2.8 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|389848127|ref|YP_006350366.1| - 0.055 13.4 0.1 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|389848127|ref|YP_006350366.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 gi|389848127|ref|YP_006350366.1| - 0.11 12.7 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|389848127|ref|YP_006350366.1| - 0.33 10.9 3.6 24 5.0 0.0 3.3 4 0 0 4 4 3 0 HTH domain MS_channel PF00924.18 gi|389848126|ref|YP_006350365.1| - 8.1e-35 120.2 0.0 1.2e-34 119.7 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Usp PF00582.26 gi|389848125|ref|YP_006350364.1| - 4.3e-12 46.8 1.3 4e-10 40.4 1.3 2.0 1 1 0 1 1 1 1 Universal stress protein family ANAPC5 PF12862.7 gi|389848125|ref|YP_006350364.1| - 0.079 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 5_nucleotid_C PF02872.18 gi|389848124|ref|YP_006350363.1| - 3.9e-30 105.1 0.0 6.9e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|389848124|ref|YP_006350363.1| - 7.8e-06 26.5 0.0 1.3e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Hydrolase PF00702.26 gi|389848124|ref|YP_006350363.1| - 0.00057 20.2 0.1 0.12 12.6 0.0 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Dodecin PF07311.12 gi|389848123|ref|YP_006350362.1| - 1.4e-20 73.3 1.2 1.5e-20 73.2 1.2 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.9 gi|662859575|ref|YP_006350361.2| - 0.0022 17.8 1.6 0.0022 17.8 1.6 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2238) Sterol_MT_C PF08498.10 gi|389848121|ref|YP_006350360.1| - 0.053 13.8 0.1 0.26 11.7 0.0 2.2 2 0 0 2 2 2 0 Sterol methyltransferase C-terminal Zn-ribbon_8 PF09723.10 gi|389848119|ref|YP_006350358.1| - 0.0024 17.9 0.7 0.0045 17.1 0.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain TackOD1 PF18551.1 gi|389848119|ref|YP_006350358.1| - 0.033 13.9 0.1 0.037 13.7 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 NOB1_Zn_bind PF08772.11 gi|389848119|ref|YP_006350358.1| - 0.038 14.2 0.9 0.06 13.5 0.9 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_6 PF14599.6 gi|389848119|ref|YP_006350358.1| - 0.053 13.5 2.5 0.62 10.1 0.4 2.3 2 1 0 2 2 2 0 Zinc-ribbon DNA_RNApol_7kD PF03604.13 gi|389848119|ref|YP_006350358.1| - 0.1 12.3 1.6 0.18 11.5 1.6 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit eIF-5_eIF-2B PF01873.17 gi|389848119|ref|YP_006350358.1| - 0.19 11.6 1.4 0.34 10.8 1.4 1.4 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Rubredoxin_2 PF18073.1 gi|389848119|ref|YP_006350358.1| - 1.3 8.8 8.4 1.7 8.4 0.3 2.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain Fe-S_biosyn PF01521.20 gi|389848118|ref|YP_006350357.1| - 4.2e-20 72.0 0.0 4.8e-20 71.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Histidinol_dh PF00815.20 gi|389848117|ref|YP_006350356.1| - 4.1e-156 520.1 7.7 4.9e-156 519.8 7.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase SWI2_SNF2 PF18766.1 gi|389848117|ref|YP_006350356.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 SWI2/SNF2 ATPase Aminotran_5 PF00266.19 gi|389848115|ref|YP_006350354.1| - 2.7e-33 115.5 0.0 3.1e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|389848115|ref|YP_006350354.1| - 0.00032 19.3 0.0 0.00047 18.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389848115|ref|YP_006350354.1| - 0.00055 19.3 0.0 0.00096 18.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|389848115|ref|YP_006350354.1| - 0.25 10.1 0.0 0.36 9.5 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain FAD-oxidase_C PF02913.19 gi|389848114|ref|YP_006350353.1| - 2.2e-60 204.4 2.4 2.5e-59 200.9 2.4 2.3 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|389848114|ref|YP_006350353.1| - 9.7e-40 135.5 0.1 2.7e-39 134.1 0.1 1.8 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|389848114|ref|YP_006350353.1| - 4.3e-10 39.9 5.2 1.1e-09 38.6 5.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|389848114|ref|YP_006350353.1| - 1.8e-09 38.0 5.2 4e-09 36.9 5.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|389848114|ref|YP_006350353.1| - 1.1e-05 25.6 0.1 0.00011 22.3 0.0 2.6 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|389848114|ref|YP_006350353.1| - 8.5e-05 22.6 4.3 0.046 13.8 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389848114|ref|YP_006350353.1| - 0.00063 19.8 5.6 0.0016 18.6 5.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389848114|ref|YP_006350353.1| - 0.0013 19.3 5.3 0.0034 17.9 5.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389848114|ref|YP_006350353.1| - 0.033 14.0 12.7 0.39 10.6 4.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389848114|ref|YP_006350353.1| - 0.047 13.9 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Phi29_Phage_SSB PF17427.2 gi|389848114|ref|YP_006350353.1| - 0.052 13.7 1.3 0.25 11.5 0.0 2.6 3 0 0 3 3 3 0 Phage Single-stranded DNA-binding protein Fer4_16 PF13484.6 gi|389848114|ref|YP_006350353.1| - 0.056 14.4 4.6 0.14 13.1 4.6 1.8 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|389848114|ref|YP_006350353.1| - 0.094 12.9 3.2 1 9.5 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389848114|ref|YP_006350353.1| - 0.17 12.5 11.7 0.31 11.7 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Cytokin-bind PF09265.10 gi|389848114|ref|YP_006350353.1| - 0.22 10.9 0.2 0.41 10.0 0.2 1.4 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_2 PF12797.7 gi|389848114|ref|YP_006350353.1| - 0.31 11.2 10.9 0.78 10.0 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389848114|ref|YP_006350353.1| - 1.1 9.4 12.1 2.6 8.3 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Flavodoxin_5 PF12724.7 gi|389848112|ref|YP_006350351.1| - 1.6e-06 28.4 0.1 1.6e-06 28.4 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|389848112|ref|YP_006350351.1| - 0.0012 19.1 0.1 0.0012 19.1 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin TMP-TENI PF02581.17 gi|389848111|ref|YP_006350350.1| - 1.4e-60 203.7 5.8 1.6e-60 203.5 5.8 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|389848111|ref|YP_006350350.1| - 9.9e-07 28.4 9.9 1.3e-06 28.0 9.9 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|389848111|ref|YP_006350350.1| - 5.8e-05 22.5 5.1 5.8e-05 22.5 5.1 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|389848111|ref|YP_006350350.1| - 0.00021 20.5 2.7 0.00025 20.3 2.1 1.6 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.17 gi|389848111|ref|YP_006350350.1| - 0.00039 19.6 1.0 0.0007 18.8 0.3 1.6 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) DUF561 PF04481.12 gi|389848111|ref|YP_006350350.1| - 0.06 12.5 1.0 0.15 11.2 0.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) FlpD PF02662.16 gi|389848111|ref|YP_006350350.1| - 0.14 12.2 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit HK PF02110.15 gi|389848110|ref|YP_006350349.1| - 7.3e-66 222.1 6.3 8.3e-66 221.9 6.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|389848110|ref|YP_006350349.1| - 2.7e-05 23.7 0.5 3.8e-05 23.2 0.5 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|389848110|ref|YP_006350349.1| - 0.0026 17.3 3.4 0.0038 16.7 3.4 1.3 1 1 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|389848109|ref|YP_006350348.1| - 3.6e-88 295.1 2.6 4.1e-88 294.9 2.6 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|389848109|ref|YP_006350348.1| - 2.1e-10 40.4 2.1 3e-10 39.9 2.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|389848109|ref|YP_006350348.1| - 0.00093 18.6 0.3 0.46 9.8 0.0 2.2 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|389848109|ref|YP_006350348.1| - 0.0011 18.5 2.6 0.002 17.7 2.6 1.5 1 1 0 1 1 1 1 Carbohydrate kinase Glyoxalase PF00903.25 gi|662859574|ref|YP_006350346.2| - 7.1e-26 90.9 0.0 2.7e-25 89.0 0.0 2.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|662859574|ref|YP_006350346.2| - 1.1e-06 28.8 0.1 0.42 10.9 0.0 3.2 2 1 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|662859574|ref|YP_006350346.2| - 0.066 13.3 2.3 15 5.7 0.1 3.4 2 1 2 4 4 4 0 Glyoxalase-like domain Abhydrolase_1 PF00561.20 gi|389848106|ref|YP_006350345.1| - 1.1e-11 44.9 0.2 8.9e-11 41.9 0.2 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389848106|ref|YP_006350345.1| - 5.5e-11 43.5 10.7 6.8e-11 43.2 10.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389848106|ref|YP_006350345.1| - 1e-08 34.8 0.6 2e-08 33.8 0.0 1.7 2 1 0 2 2 2 1 Serine aminopeptidase, S33 HTH_10 PF04967.12 gi|389848105|ref|YP_006350344.1| - 3.1e-13 49.3 0.0 4.9e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Acylphosphatase PF00708.18 gi|389848105|ref|YP_006350344.1| - 0.019 15.3 0.0 0.07 13.5 0.0 1.9 1 1 1 2 2 2 0 Acylphosphatase Abhydrolase_1 PF00561.20 gi|389848104|ref|YP_006350343.1| - 7.1e-21 75.0 0.0 1.5e-20 74.0 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|389848104|ref|YP_006350343.1| - 2.8e-12 46.6 0.0 5.2e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|389848104|ref|YP_006350343.1| - 3.6e-09 36.3 0.0 6.6e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 HHH_5 PF14520.6 gi|389848104|ref|YP_006350343.1| - 4.4e-07 30.4 0.0 8.8e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|389848104|ref|YP_006350343.1| - 9.8e-05 22.6 0.2 0.00083 19.6 0.2 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) DUF3141 PF11339.8 gi|389848104|ref|YP_006350343.1| - 0.00013 20.5 0.0 0.00045 18.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) PHB_depo_C PF06850.11 gi|389848104|ref|YP_006350343.1| - 0.00014 21.4 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DLH PF01738.18 gi|389848104|ref|YP_006350343.1| - 0.0002 21.0 0.0 0.007 15.9 0.0 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|389848104|ref|YP_006350343.1| - 0.0015 18.2 0.0 0.019 14.6 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 gi|389848104|ref|YP_006350343.1| - 0.0044 17.7 0.0 0.0089 16.6 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Cdd1 PF11731.8 gi|389848104|ref|YP_006350343.1| - 0.0046 17.2 0.0 0.0092 16.2 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus Lipase_2 PF01674.18 gi|389848104|ref|YP_006350343.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 2) Homeodomain PF00046.29 gi|389848104|ref|YP_006350343.1| - 0.069 13.0 0.1 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain PGAP1 PF07819.13 gi|389848104|ref|YP_006350343.1| - 0.082 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein YdaS_antitoxin PF15943.5 gi|389848104|ref|YP_006350343.1| - 0.11 12.4 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SAM_2 PF07647.17 gi|389848104|ref|YP_006350343.1| - 0.13 12.4 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) Abhydrolase_5 PF12695.7 gi|389848104|ref|YP_006350343.1| - 0.15 11.8 0.0 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family YHS PF04945.13 gi|389848103|ref|YP_006350342.1| - 0.0012 18.9 0.0 0.0014 18.7 0.0 1.1 1 0 0 1 1 1 1 YHS domain PPDK_N PF01326.19 gi|389848102|ref|YP_006350341.1| - 2.8e-81 273.3 0.0 5.2e-81 272.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|389848102|ref|YP_006350341.1| - 7.5e-23 80.0 1.2 6.2e-22 77.1 0.0 2.4 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HTH_10 PF04967.12 gi|389848101|ref|YP_006350340.1| - 1.4e-13 50.4 0.0 2.6e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|389848101|ref|YP_006350340.1| - 0.00057 19.3 0.1 0.0011 18.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|389848101|ref|YP_006350340.1| - 0.016 15.1 0.5 0.2 11.6 0.1 2.3 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|389848101|ref|YP_006350340.1| - 0.023 14.6 0.1 0.055 13.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|389848101|ref|YP_006350340.1| - 0.049 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389848101|ref|YP_006350340.1| - 0.11 12.2 0.1 0.29 10.8 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 FAD_binding_3 PF01494.19 gi|389848096|ref|YP_006350335.1| - 6e-08 32.3 0.7 0.00016 21.1 0.6 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|389848096|ref|YP_006350335.1| - 1.4e-07 31.5 8.5 0.001 18.7 0.2 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389848096|ref|YP_006350335.1| - 2.6e-07 30.2 0.5 0.00034 19.9 0.7 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|389848096|ref|YP_006350335.1| - 1.1e-06 27.7 1.6 0.00027 19.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|389848096|ref|YP_006350335.1| - 1.3e-06 28.0 0.1 2.2e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389848096|ref|YP_006350335.1| - 3.4e-06 26.4 0.4 5.2e-06 25.8 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|389848096|ref|YP_006350335.1| - 1.3e-05 24.1 1.0 0.00087 18.1 2.0 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|389848096|ref|YP_006350335.1| - 6.8e-05 23.0 2.6 0.0014 18.8 0.7 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|389848096|ref|YP_006350335.1| - 0.00029 20.2 1.2 0.00051 19.4 1.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389848096|ref|YP_006350335.1| - 0.0015 17.7 1.7 0.0051 15.9 2.3 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|389848096|ref|YP_006350335.1| - 0.0034 17.4 1.6 0.036 14.0 1.6 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|389848096|ref|YP_006350335.1| - 0.027 13.7 0.2 0.044 13.0 0.2 1.3 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|389848096|ref|YP_006350335.1| - 0.048 13.0 1.3 0.077 12.3 1.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|389848096|ref|YP_006350335.1| - 0.085 11.9 1.2 0.28 10.2 0.9 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|389848094|ref|YP_006350333.1| - 5.1e-53 179.1 0.0 7e-53 178.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|389848094|ref|YP_006350333.1| - 1.5e-10 40.9 0.0 1.9e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|389848094|ref|YP_006350333.1| - 0.0006 20.0 0.0 0.0013 19.0 0.0 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|389848094|ref|YP_006350333.1| - 0.015 15.9 0.0 0.049 14.2 0.0 2.0 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.21 gi|389848094|ref|YP_006350333.1| - 0.031 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 ThiF family DUF4440 PF14534.6 gi|389848094|ref|YP_006350333.1| - 0.049 14.0 0.0 1.1 9.7 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4440) ILVD_EDD PF00920.21 gi|389848093|ref|YP_006350332.1| - 5.2e-202 672.0 0.6 5.9e-202 671.9 0.6 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|389848093|ref|YP_006350332.1| - 0.07 13.2 0.4 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 DGC domain MoCF_biosynth PF00994.24 gi|389848092|ref|YP_006350331.1| - 1.7e-28 99.1 0.5 2.1e-28 98.8 0.5 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.26 gi|389848091|ref|YP_006350330.1| - 1.1e-35 122.4 0.1 3.1e-35 121.0 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389848091|ref|YP_006350330.1| - 8.6e-22 78.6 0.0 1.4e-21 77.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389848091|ref|YP_006350330.1| - 5.5e-20 71.3 0.0 3.9e-19 68.5 0.0 2.1 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|389848091|ref|YP_006350330.1| - 6.8e-05 22.3 0.3 0.00011 21.6 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|389848091|ref|YP_006350330.1| - 0.00011 21.8 0.1 0.00016 21.2 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.20 gi|389848091|ref|YP_006350330.1| - 0.025 14.7 0.7 0.045 13.9 0.2 1.6 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.8 gi|389848091|ref|YP_006350330.1| - 0.088 12.6 0.2 0.21 11.4 0.2 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Semialdhyde_dh PF01118.24 gi|389848091|ref|YP_006350330.1| - 0.1 13.0 0.2 0.2 12.1 0.2 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ACP_syn_III_C PF08541.10 gi|389848091|ref|YP_006350330.1| - 0.31 11.2 0.9 0.76 10.0 0.0 2.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal acVLRF1 PF18859.1 gi|389848088|ref|YP_006350327.1| - 2.2e-30 105.6 1.6 2.2e-30 105.6 1.6 2.2 2 1 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|389848088|ref|YP_006350327.1| - 4.2e-06 27.0 0.7 4.2e-06 27.0 0.7 2.3 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 Tropomyosin PF00261.20 gi|389848088|ref|YP_006350327.1| - 0.0033 16.8 3.0 0.0053 16.2 3.0 1.4 1 0 0 1 1 1 1 Tropomyosin eRF1_2 PF03464.15 gi|389848088|ref|YP_006350327.1| - 0.0075 16.6 0.0 0.023 15.0 0.0 1.8 2 0 0 2 2 1 1 eRF1 domain 2 EzrA PF06160.12 gi|389848088|ref|YP_006350327.1| - 0.017 13.3 0.3 0.026 12.7 0.3 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DivIC PF04977.15 gi|389848088|ref|YP_006350327.1| - 0.018 14.8 6.1 0.085 12.6 0.8 2.5 2 1 1 3 3 2 0 Septum formation initiator Jnk-SapK_ap_N PF09744.9 gi|389848088|ref|YP_006350327.1| - 0.023 14.9 3.0 0.044 14.0 3.0 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ABC_tran_CTD PF16326.5 gi|389848088|ref|YP_006350327.1| - 0.037 14.3 4.8 0.45 10.8 5.1 2.4 1 1 1 2 2 2 0 ABC transporter C-terminal domain KELK PF15796.5 gi|389848088|ref|YP_006350327.1| - 0.045 14.2 2.4 0.11 12.9 2.4 1.6 1 0 0 1 1 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase WD40_alt PF14077.6 gi|389848088|ref|YP_006350327.1| - 0.053 13.4 1.9 2.4 8.1 0.0 2.5 2 0 0 2 2 2 0 Alternative WD40 repeat motif TSC22 PF01166.18 gi|389848088|ref|YP_006350327.1| - 0.061 13.6 1.1 1.6 9.1 0.2 2.3 2 0 0 2 2 2 0 TSC-22/dip/bun family KASH_CCD PF14662.6 gi|389848088|ref|YP_006350327.1| - 0.063 13.1 0.4 0.099 12.5 0.4 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH PilJ PF13675.6 gi|389848088|ref|YP_006350327.1| - 0.073 13.1 2.5 0.2 11.7 0.4 2.2 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Myosin_tail_1 PF01576.19 gi|389848088|ref|YP_006350327.1| - 0.081 10.7 6.8 0.11 10.3 6.8 1.1 1 0 0 1 1 1 0 Myosin tail CLZ PF16526.5 gi|389848088|ref|YP_006350327.1| - 0.081 13.3 6.4 0.22 11.9 0.6 2.8 3 0 0 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Tropomyosin_1 PF12718.7 gi|389848088|ref|YP_006350327.1| - 0.16 12.2 7.3 0.27 11.4 4.4 2.2 2 0 0 2 2 2 0 Tropomyosin like DUF4140 PF13600.6 gi|389848088|ref|YP_006350327.1| - 0.31 11.5 9.6 1.2 9.6 2.0 3.0 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) Cnn_1N PF07989.11 gi|389848088|ref|YP_006350327.1| - 0.35 11.1 1.6 0.82 9.9 1.6 1.6 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 FmiP_Thoc5 PF09766.9 gi|389848088|ref|YP_006350327.1| - 0.44 9.8 1.6 0.67 9.2 1.6 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 bZIP_2 PF07716.15 gi|389848088|ref|YP_006350327.1| - 0.47 10.6 5.0 1.1 9.4 0.9 2.3 2 0 0 2 2 2 0 Basic region leucine zipper CorA PF01544.18 gi|389848088|ref|YP_006350327.1| - 5.7 6.2 6.2 1.6 8.0 3.3 1.5 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF1611 PF07755.11 gi|389848087|ref|YP_006350326.1| - 2.6e-73 245.6 0.2 3.7e-73 245.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|389848087|ref|YP_006350326.1| - 4.7e-27 94.1 0.0 2e-26 92.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain AAA_26 PF13500.6 gi|389848087|ref|YP_006350326.1| - 0.0079 16.0 0.0 3.1 7.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain GFO_IDH_MocA PF01408.22 gi|389848087|ref|YP_006350326.1| - 0.03 15.1 0.0 0.14 12.9 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold MR_MLE_C PF13378.6 gi|389848086|ref|YP_006350325.1| - 1.8e-37 129.0 0.5 2.7e-37 128.5 0.5 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389848086|ref|YP_006350325.1| - 1.3e-14 54.4 0.0 2.3e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|389848086|ref|YP_006350325.1| - 0.0073 15.5 0.1 0.014 14.6 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.22 gi|389848086|ref|YP_006350325.1| - 0.021 14.1 0.0 0.039 13.2 0.0 1.4 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|389848086|ref|YP_006350325.1| - 0.099 12.8 0.0 0.24 11.6 0.0 1.5 1 1 0 1 1 1 0 Enolase, N-terminal domain PspA_IM30 PF04012.12 gi|662859572|ref|YP_006350323.2| - 6.2e-30 104.4 30.8 6.2e-30 104.4 30.8 1.5 2 0 0 2 2 2 1 PspA/IM30 family DUF1664 PF07889.12 gi|662859572|ref|YP_006350323.2| - 0.0046 17.0 1.3 0.0046 17.0 1.3 3.4 2 2 2 4 4 4 1 Protein of unknown function (DUF1664) ExsD PF16806.5 gi|662859572|ref|YP_006350323.2| - 0.024 14.6 5.3 0.037 13.9 5.3 1.3 1 0 0 1 1 1 0 Antiactivator protein ExsD YabA PF06156.13 gi|662859572|ref|YP_006350323.2| - 0.085 13.5 21.6 0.19 12.4 5.3 3.5 1 1 2 3 3 3 0 Initiation control protein YabA Osmo_CC PF08946.10 gi|662859572|ref|YP_006350323.2| - 0.091 13.0 0.9 0.091 13.0 0.9 4.6 5 1 0 5 5 4 0 Osmosensory transporter coiled coil DUF3450 PF11932.8 gi|662859572|ref|YP_006350323.2| - 0.2 11.0 29.5 0.53 9.5 7.8 3.9 1 1 2 4 4 4 0 Protein of unknown function (DUF3450) ERM PF00769.19 gi|662859572|ref|YP_006350323.2| - 0.21 11.4 39.7 0.047 13.5 36.6 1.5 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Flagellin_C PF00700.21 gi|662859572|ref|YP_006350323.2| - 0.22 11.9 0.1 0.22 11.9 0.1 4.3 3 2 1 5 5 5 0 Bacterial flagellin C-terminal helical region Snf7 PF03357.21 gi|662859572|ref|YP_006350323.2| - 0.5 9.9 52.5 0.042 13.4 16.8 4.1 1 1 2 3 3 3 0 Snf7 FapA PF03961.13 gi|662859572|ref|YP_006350323.2| - 0.54 8.8 21.5 4.9 5.6 16.6 2.6 1 1 1 2 2 2 0 Flagellar Assembly Protein A RmuC PF02646.16 gi|662859572|ref|YP_006350323.2| - 0.62 9.1 20.3 0.38 9.8 0.2 3.4 1 1 2 3 3 3 0 RmuC family Prominin PF05478.11 gi|662859572|ref|YP_006350323.2| - 0.73 7.7 7.6 1.1 7.1 7.6 1.3 1 0 0 1 1 1 0 Prominin YlqD PF11068.8 gi|662859572|ref|YP_006350323.2| - 1.7 9.0 29.6 1.5 9.2 16.8 3.2 1 1 2 3 3 3 0 YlqD protein Baculo_PEP_C PF04513.12 gi|662859572|ref|YP_006350323.2| - 4.2 7.4 8.5 24 5.0 5.9 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|662859572|ref|YP_006350323.2| - 4.7 6.0 38.0 0.055 12.3 23.6 2.8 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF2894 PF11445.8 gi|662859572|ref|YP_006350323.2| - 5.6 7.4 14.3 11 6.5 9.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2894) FTA4 PF13093.6 gi|662859572|ref|YP_006350323.2| - 6.4 6.6 25.2 29 4.5 15.7 3.2 2 2 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 AAA_13 PF13166.6 gi|662859572|ref|YP_006350323.2| - 8.4 4.9 24.1 1.5 7.3 19.6 1.6 1 1 0 1 1 1 0 AAA domain DUF5082 PF16888.5 gi|662859572|ref|YP_006350323.2| - 8.4 6.7 25.5 0.077 13.3 5.8 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF5082) MerR-DNA-bind PF09278.11 gi|662859572|ref|YP_006350323.2| - 8.8 7.0 24.1 2.8 8.5 0.3 4.6 4 1 1 5 5 4 0 MerR, DNA binding DLH PF01738.18 gi|662859571|ref|YP_006350322.2| - 1.5e-06 28.0 0.1 2e-06 27.5 0.1 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|662859571|ref|YP_006350322.2| - 7.1e-05 22.2 0.3 0.047 12.9 0.2 2.6 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|662859571|ref|YP_006350322.2| - 0.00031 20.6 0.0 0.00041 20.2 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.18 gi|662859571|ref|YP_006350322.2| - 0.00037 20.2 0.1 0.00071 19.3 0.1 1.4 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|662859571|ref|YP_006350322.2| - 0.0031 17.2 0.6 0.12 12.0 0.1 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold FSH1 PF03959.13 gi|662859571|ref|YP_006350322.2| - 0.015 15.0 0.0 0.025 14.2 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 gi|662859571|ref|YP_006350322.2| - 0.016 15.8 10.8 0.039 14.5 5.0 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family DUF1100 PF06500.11 gi|662859571|ref|YP_006350322.2| - 0.017 13.9 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) Lipase_3 PF01764.25 gi|662859571|ref|YP_006350322.2| - 0.031 14.1 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Esterase PF00756.20 gi|662859571|ref|YP_006350322.2| - 0.071 12.7 0.1 0.13 11.9 0.1 1.5 1 1 0 1 1 1 0 Putative esterase BAAT_C PF08840.11 gi|662859571|ref|YP_006350322.2| - 0.078 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.21 gi|662859571|ref|YP_006350322.2| - 0.086 12.3 0.2 0.18 11.3 0.2 1.5 1 0 0 1 1 1 0 Prolyl oligopeptidase family AXE1 PF05448.12 gi|662859571|ref|YP_006350322.2| - 0.12 11.1 0.1 0.19 10.4 0.1 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) LIP PF03583.14 gi|662859571|ref|YP_006350322.2| - 0.35 10.1 1.1 7.8 5.7 0.1 2.1 2 0 0 2 2 2 0 Secretory lipase UCR_UQCRX_QCR9 PF05365.12 gi|389848082|ref|YP_006350321.1| - 0.02 14.9 0.2 0.02 14.9 0.2 3.0 2 1 1 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF4926 PF16277.5 gi|389848082|ref|YP_006350321.1| - 0.15 11.4 0.1 0.36 10.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4926) ABC_trans_CmpB PF06541.11 gi|389848082|ref|YP_006350321.1| - 0.2 11.9 6.3 0.1 12.9 4.2 1.5 2 0 0 2 2 2 0 Putative ABC-transporter type IV HTH_20 PF12840.7 gi|389848077|ref|YP_006350316.1| - 0.14 12.3 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Replic_Relax PF13814.6 gi|389848077|ref|YP_006350316.1| - 0.15 12.1 0.0 0.49 10.4 0.0 1.8 2 0 0 2 2 2 0 Replication-relaxation TFIIS_C PF01096.18 gi|662859570|ref|YP_006350314.2| - 6e-17 61.2 4.2 6e-17 61.2 4.2 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|662859570|ref|YP_006350314.2| - 2e-06 27.6 10.4 4.7e-05 23.2 2.2 3.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|662859570|ref|YP_006350314.2| - 0.00018 21.3 11.2 0.0081 16.1 1.1 2.8 2 1 1 3 3 3 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|662859570|ref|YP_006350314.2| - 0.0015 18.4 1.4 0.0015 18.4 1.4 2.5 3 1 0 3 3 3 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|662859570|ref|YP_006350314.2| - 0.0076 15.9 9.9 0.25 11.0 0.2 3.6 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|662859570|ref|YP_006350314.2| - 0.079 12.7 12.2 3.3 7.5 1.1 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain DZR PF12773.7 gi|662859570|ref|YP_006350314.2| - 0.087 12.9 12.0 0.4 10.7 1.5 2.9 2 1 0 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|662859570|ref|YP_006350314.2| - 0.16 12.3 15.6 1.7 9.1 3.2 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar ADK_lid PF05191.14 gi|662859570|ref|YP_006350314.2| - 0.22 11.5 9.0 6 6.9 0.3 3.6 4 0 0 4 4 4 0 Adenylate kinase, active site lid Ogr_Delta PF04606.12 gi|662859570|ref|YP_006350314.2| - 0.23 11.5 0.2 0.23 11.5 0.2 3.3 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.6 gi|662859570|ref|YP_006350314.2| - 0.44 10.0 15.6 2 7.9 0.5 3.9 3 1 1 4 4 4 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|662859570|ref|YP_006350314.2| - 0.57 10.7 7.4 16 6.1 1.6 3.4 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain zf-RING_7 PF02591.15 gi|662859570|ref|YP_006350314.2| - 0.86 9.8 9.1 8.7 6.6 0.1 3.9 4 1 0 4 4 4 0 C4-type zinc ribbon domain HypA PF01155.19 gi|662859570|ref|YP_006350314.2| - 0.9 9.6 9.9 78 3.3 9.9 2.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|662859570|ref|YP_006350314.2| - 2.4 8.1 10.3 6.1 6.9 0.3 3.3 3 1 1 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|662859570|ref|YP_006350314.2| - 2.5 7.9 12.5 14 5.5 0.0 4.4 5 0 0 5 5 5 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|662859570|ref|YP_006350314.2| - 2.9 7.9 11.8 6.3 6.8 0.1 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-C4_Topoisom PF01396.19 gi|662859570|ref|YP_006350314.2| - 4.4 7.2 11.8 0.67 9.8 1.3 3.4 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf_UBZ PF18439.1 gi|662859570|ref|YP_006350314.2| - 4.6 6.9 13.0 2.4 7.8 0.1 3.7 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Rpr2 PF04032.16 gi|662859570|ref|YP_006350314.2| - 4.6 7.6 7.1 30 5.0 7.1 2.2 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_13 PF09855.9 gi|662859570|ref|YP_006350314.2| - 4.7 7.4 8.9 4.1 7.6 0.1 3.2 3 1 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) XPA_N PF01286.18 gi|662859570|ref|YP_006350314.2| - 4.9 7.3 11.7 8.2 6.6 0.1 3.5 4 0 0 4 4 3 0 XPA protein N-terminal ZZ PF00569.17 gi|662859570|ref|YP_006350314.2| - 5.3 6.9 11.9 0.67 9.8 0.3 3.4 3 1 0 3 3 3 0 Zinc finger, ZZ type zinc-ribbons_6 PF07191.12 gi|662859570|ref|YP_006350314.2| - 6.2 6.9 11.0 1.3e+03 -0.6 11.0 2.5 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.6 gi|662859570|ref|YP_006350314.2| - 6.2 7.4 7.5 2.8 8.5 0.3 3.0 3 0 0 3 3 3 0 Zinc-finger double domain Baculo_PEP_C PF04513.12 gi|389848073|ref|YP_006350312.1| - 0.00022 21.3 0.4 0.085 12.9 0.2 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|389848073|ref|YP_006350312.1| - 0.0095 16.4 3.6 0.44 11.0 0.4 3.0 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein Tropomyosin_1 PF12718.7 gi|389848073|ref|YP_006350312.1| - 0.039 14.1 9.9 3.4 7.8 0.1 2.4 1 1 1 2 2 2 0 Tropomyosin like HMMR_N PF15905.5 gi|389848073|ref|YP_006350312.1| - 0.043 13.3 0.6 0.057 12.9 0.6 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal T2SSF PF00482.23 gi|389848073|ref|YP_006350312.1| - 0.057 13.4 3.3 0.053 13.5 1.5 1.8 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F zf-C3HC4_3 PF13920.6 gi|389848073|ref|YP_006350312.1| - 0.066 13.1 0.5 0.099 12.5 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF1664 PF07889.12 gi|389848073|ref|YP_006350312.1| - 0.07 13.2 2.0 0.28 11.3 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ZapB PF06005.12 gi|389848073|ref|YP_006350312.1| - 0.099 13.1 1.0 1.8 9.1 0.2 2.6 1 1 1 2 2 2 0 Cell division protein ZapB HRDC PF00570.23 gi|389848073|ref|YP_006350312.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 HRDC domain DUF4763 PF15960.5 gi|389848073|ref|YP_006350312.1| - 0.1 11.9 0.2 0.13 11.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) RRN3 PF05327.11 gi|389848073|ref|YP_006350312.1| - 0.11 11.0 1.9 0.15 10.6 1.9 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Na_Ca_ex_C PF16494.5 gi|389848073|ref|YP_006350312.1| - 0.22 12.0 1.2 0.43 11.0 1.2 1.5 1 1 0 1 1 1 0 C-terminal extension of sodium/calcium exchanger domain FlaC_arch PF05377.11 gi|389848073|ref|YP_006350312.1| - 0.46 10.9 1.6 60 4.1 0.0 3.3 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) zinc_ribbon_5 PF13719.6 gi|389848073|ref|YP_006350312.1| - 0.48 10.2 2.6 17 5.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RHH_3 PF12651.7 gi|389848073|ref|YP_006350312.1| - 0.77 9.8 4.2 0.48 10.4 0.8 2.4 2 1 0 2 2 2 0 Ribbon-helix-helix domain Prefoldin PF02996.17 gi|389848073|ref|YP_006350312.1| - 1.3 9.0 3.9 5.6 6.9 0.4 2.8 1 1 2 3 3 3 0 Prefoldin subunit Spc7 PF08317.11 gi|389848073|ref|YP_006350312.1| - 1.8 7.4 4.7 3.9 6.2 4.6 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein SbcD_C PF12320.8 gi|389848073|ref|YP_006350312.1| - 2 8.8 7.3 1.3 9.4 1.1 2.6 1 1 1 2 2 2 0 Type 5 capsule protein repressor C-terminal domain DUF4140 PF13600.6 gi|389848073|ref|YP_006350312.1| - 2.8 8.4 9.7 0.23 11.9 2.8 2.5 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) ATPase PF06745.13 gi|389848072|ref|YP_006350311.1| - 2.1e-08 33.8 0.0 0.00082 18.8 0.1 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|389848072|ref|YP_006350311.1| - 0.00033 20.3 0.1 0.054 13.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain GHMP_kinases_N PF00288.26 gi|389848071|ref|YP_006350310.1| - 4.2e-07 30.1 0.2 1e-06 28.8 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|389848071|ref|YP_006350310.1| - 1.7e-05 25.1 0.1 8e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal DUF4382 PF14321.6 gi|389848070|ref|YP_006350309.1| - 3.3e-24 85.7 0.2 3.3e-24 85.7 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4382) TAT_signal PF10518.9 gi|389848070|ref|YP_006350309.1| - 0.00034 20.3 2.0 0.00063 19.5 2.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF908 PF06012.12 gi|389848070|ref|YP_006350309.1| - 0.3 10.5 6.1 0.34 10.3 6.1 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) TrkA_N PF02254.18 gi|389848069|ref|YP_006350308.1| - 1.9e-05 24.9 0.2 2.2e-05 24.7 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain GMP_synt_C PF00958.22 gi|389848068|ref|YP_006350307.1| - 5e-29 100.2 0.0 1e-28 99.2 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|389848068|ref|YP_006350307.1| - 4.2e-08 32.6 0.1 6.9e-07 28.6 0.1 2.1 1 1 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|389848068|ref|YP_006350307.1| - 4.5e-05 22.4 0.0 0.0015 17.4 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|389848068|ref|YP_006350307.1| - 0.0067 16.0 0.0 0.015 14.8 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|389848068|ref|YP_006350307.1| - 0.018 15.1 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TmoB PF06234.12 gi|389848068|ref|YP_006350307.1| - 0.018 15.1 0.1 2.4 8.3 0.1 2.5 2 0 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) QueC PF06508.13 gi|389848068|ref|YP_006350307.1| - 0.038 13.5 0.0 0.1 12.0 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|389848068|ref|YP_006350307.1| - 0.098 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase CTP_synth_N PF06418.14 gi|389848067|ref|YP_006350306.1| - 8.4e-124 412.1 0.1 1.1e-123 411.8 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|389848067|ref|YP_006350306.1| - 1.2e-55 188.2 0.0 2.2e-55 187.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|389848067|ref|YP_006350306.1| - 1.9e-08 34.4 0.0 1e-07 31.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|389848067|ref|YP_006350306.1| - 0.0013 18.8 0.0 0.0021 18.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Lipase_chap PF03280.14 gi|389848067|ref|YP_006350306.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein Mac PF12464.8 gi|662859569|ref|YP_006350305.2| - 2e-20 72.8 0.4 2.9e-20 72.2 0.4 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep_2 PF14602.6 gi|662859569|ref|YP_006350305.2| - 9.3e-15 54.1 7.0 8e-11 41.5 2.2 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|662859569|ref|YP_006350305.2| - 9.1e-14 50.6 9.7 1.7e-10 40.2 2.5 2.6 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) MFS_3 PF05977.13 gi|389848065|ref|YP_006350304.1| - 1.9e-23 82.7 29.2 3.6e-12 45.5 10.8 2.0 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1 PF07690.16 gi|389848065|ref|YP_006350304.1| - 9.3e-14 51.1 40.2 6.4e-10 38.5 10.1 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sperm_Ag_HE2 PF05324.13 gi|389848065|ref|YP_006350304.1| - 0.17 12.4 0.0 0.39 11.2 0.0 1.6 1 0 0 1 1 1 0 Sperm antigen HE2 Aldo_ket_red PF00248.21 gi|389848064|ref|YP_006350303.1| - 7.2e-56 189.5 0.0 1.5e-39 135.9 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family PEPcase PF00311.17 gi|662859568|ref|YP_006350302.2| - 1.1e-246 820.9 0.2 1.6e-246 820.3 0.2 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|662859568|ref|YP_006350302.2| - 0.0024 16.5 0.0 0.0048 15.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Tropomyosin PF00261.20 gi|662859568|ref|YP_006350302.2| - 0.0061 16.0 1.2 0.0061 16.0 1.2 3.5 3 0 0 3 3 3 1 Tropomyosin DUF1690 PF07956.11 gi|662859568|ref|YP_006350302.2| - 0.089 13.2 7.5 1.9 8.9 0.9 3.1 3 0 0 3 3 3 0 Protein of Unknown function (DUF1690) Rx_N PF18052.1 gi|662859568|ref|YP_006350302.2| - 0.17 12.2 1.1 26 5.2 0.2 3.2 2 0 0 2 2 2 0 Rx N-terminal domain EGL-1 PF11430.8 gi|662859568|ref|YP_006350302.2| - 0.24 11.3 0.9 0.45 10.4 0.9 1.4 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 Rieske PF00355.26 gi|389848062|ref|YP_006350301.1| - 0.00057 19.8 0.1 0.00098 19.0 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Aldedh PF00171.22 gi|389848061|ref|YP_006350300.1| - 1.4e-151 505.2 0.0 1.6e-151 504.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family ThiS PF02597.20 gi|389848060|ref|YP_006350299.1| - 4.3e-13 49.7 0.1 5e-13 49.5 0.1 1.1 1 0 0 1 1 1 1 ThiS family PG_isomerase_N PF18353.1 gi|389848060|ref|YP_006350299.1| - 0.017 15.5 0.1 0.027 14.9 0.1 1.3 1 0 0 1 1 1 0 Phosphoglucose isomerase N-terminal domain TrkA_C PF02080.21 gi|389848059|ref|YP_006350298.1| - 0.00027 20.7 0.2 0.00073 19.3 0.2 1.8 1 0 0 1 1 1 1 TrkA-C domain TrkA_C PF02080.21 gi|389848058|ref|YP_006350297.1| - 1.9e-15 56.4 0.4 5.8e-13 48.5 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain Amdase PF17645.1 gi|389848058|ref|YP_006350297.1| - 0.0044 16.7 0.2 0.01 15.5 0.2 1.6 1 0 0 1 1 1 1 Arylmalonate decarboxylase PTS-HPr PF00381.19 gi|389848058|ref|YP_006350297.1| - 0.12 12.6 0.1 1.3 9.4 0.2 2.4 2 0 0 2 2 2 0 PTS HPr component phosphorylation site 5TM-5TMR_LYT PF07694.12 gi|389848058|ref|YP_006350297.1| - 1.3 8.5 7.6 2.2 7.8 7.6 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_N PF02254.18 gi|389848057|ref|YP_006350296.1| - 1.4e-29 102.6 0.4 2.3e-29 102.0 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|389848057|ref|YP_006350296.1| - 2.5e-11 43.4 5.3 2.5e-11 43.4 5.3 2.5 3 1 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|389848057|ref|YP_006350296.1| - 7.1e-05 22.1 0.7 0.00011 21.6 0.7 1.4 1 1 0 1 1 1 1 Ion transport protein NTP_transf_3 PF12804.7 gi|389848057|ref|YP_006350296.1| - 0.012 16.0 0.5 0.055 13.8 0.5 2.0 1 1 0 1 1 1 0 MobA-like NTP transferase domain Sacchrp_dh_NADP PF03435.18 gi|389848057|ref|YP_006350296.1| - 0.038 14.2 0.0 0.089 13.0 0.0 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain SLS PF14611.6 gi|389848057|ref|YP_006350296.1| - 0.054 13.3 0.1 0.074 12.9 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator DUF2085 PF09858.9 gi|389848057|ref|YP_006350296.1| - 1.1 9.8 4.0 1.9 9.0 2.8 2.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2085) HPP PF04982.13 gi|662859567|ref|YP_006350295.2| - 1.9e-13 50.7 2.3 1.9e-13 50.7 2.3 1.7 2 0 0 2 2 2 1 HPP family Usp PF00582.26 gi|662859567|ref|YP_006350295.2| - 4.1e-08 33.9 7.4 0.00096 19.7 4.5 4.1 2 2 0 2 2 2 2 Universal stress protein family DUF4643 PF15485.6 gi|662859567|ref|YP_006350295.2| - 0.088 12.6 2.1 0.13 12.1 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4643) SCAMP PF04144.13 gi|662859567|ref|YP_006350295.2| - 6.7 7.0 8.0 5.6 7.2 1.6 2.2 1 1 1 2 2 2 0 SCAMP family PNP_UDP_1 PF01048.20 gi|389848055|ref|YP_006350294.1| - 1.2e-44 152.3 1.3 1.4e-44 152.1 1.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3568 PF12092.8 gi|389848055|ref|YP_006350294.1| - 0.063 13.4 0.1 0.18 11.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) Fun_ATP-synt_8 PF05933.13 gi|662859566|ref|YP_006350292.2| - 0.045 13.9 1.4 2.1 8.6 0.0 2.5 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) NolX PF05819.11 gi|662859566|ref|YP_006350292.2| - 0.26 10.6 0.2 0.31 10.3 0.2 1.2 1 0 0 1 1 1 0 NolX protein PfkB PF00294.24 gi|662859565|ref|YP_006350291.2| - 2.2e-53 181.6 5.2 2.5e-53 181.3 5.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF63 PF01889.17 gi|389848051|ref|YP_006350290.1| - 1.5e-21 77.8 5.1 2.1e-21 77.3 5.1 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.9 gi|389848050|ref|YP_006350289.1| - 6.8e-10 39.0 2.3 1.1e-09 38.3 2.3 1.3 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|389848050|ref|YP_006350289.1| - 0.17 11.0 1.0 0.61 9.2 0.1 2.0 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase Radical_SAM PF04055.21 gi|389848049|ref|YP_006350288.1| - 9.2e-24 84.7 0.1 1.7e-23 83.8 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|389848049|ref|YP_006350288.1| - 1.7e-19 69.7 0.1 3.6e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|389848049|ref|YP_006350288.1| - 2e-05 24.5 0.2 3.7e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 TRAM domain AlaDh_PNT_N PF05222.15 gi|389848049|ref|YP_006350288.1| - 0.017 15.5 0.2 0.051 13.9 0.2 1.8 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, N-terminal domain Acetyltransf_10 PF13673.7 gi|389848048|ref|YP_006350287.1| - 4e-11 42.9 0.0 5.6e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848048|ref|YP_006350287.1| - 9.8e-10 38.7 0.0 1.2e-09 38.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389848048|ref|YP_006350287.1| - 2.1e-09 37.7 0.0 2.9e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389848048|ref|YP_006350287.1| - 3.8e-06 27.0 0.0 5.3e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389848048|ref|YP_006350287.1| - 0.002 18.2 0.0 0.0031 17.6 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|389848048|ref|YP_006350287.1| - 0.0032 17.4 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltr_2 PF13718.6 gi|389848048|ref|YP_006350287.1| - 0.0089 15.4 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase 2 Peptidase_S24 PF00717.23 gi|389848047|ref|YP_006350286.1| - 0.00013 21.9 0.1 0.00043 20.2 0.1 1.9 1 1 0 1 1 1 1 Peptidase S24-like Cation_efflux PF01545.21 gi|662859564|ref|YP_006350285.2| - 4.3e-41 140.9 4.4 5.5e-41 140.5 4.4 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|662859564|ref|YP_006350285.2| - 6.4e-17 61.4 2.3 9.8e-17 60.9 2.3 1.2 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter HIT PF01230.23 gi|389848045|ref|YP_006350284.1| - 9.7e-13 48.7 0.0 1.4e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|389848045|ref|YP_006350284.1| - 3.8e-06 27.4 0.0 6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|389848045|ref|YP_006350284.1| - 2.7e-05 24.0 0.0 0.00016 21.5 0.0 2.0 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 Peptidase_M24 PF00557.24 gi|389848044|ref|YP_006350283.1| - 1.3e-41 142.6 0.4 1.6e-41 142.3 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Metallophos PF00149.28 gi|389848043|ref|YP_006350282.1| - 1.8e-12 48.2 3.1 4.1e-12 47.0 3.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|389848043|ref|YP_006350282.1| - 1.4e-08 35.1 0.0 2e-08 34.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|389848043|ref|YP_006350282.1| - 0.001 18.4 0.1 0.0028 17.0 0.0 1.7 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DLH PF01738.18 gi|389848042|ref|YP_006350281.1| - 5.6e-05 22.8 0.0 6.8e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|389848042|ref|YP_006350281.1| - 0.00057 20.6 0.2 0.69 10.5 0.2 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389848042|ref|YP_006350281.1| - 0.0023 17.2 0.1 0.35 10.1 0.0 2.7 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|389848042|ref|YP_006350281.1| - 0.0034 17.1 0.0 2.2 7.9 0.0 2.5 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|389848042|ref|YP_006350281.1| - 0.0046 16.5 0.0 0.76 9.2 0.0 2.3 1 1 1 2 2 2 2 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|389848042|ref|YP_006350281.1| - 0.0088 16.0 0.0 2.1 8.2 0.0 2.1 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal DSBA PF01323.20 gi|389848041|ref|YP_006350280.1| - 4.5e-37 127.7 0.0 5.2e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|389848041|ref|YP_006350280.1| - 5.6e-09 36.4 0.1 4.6e-07 30.1 0.1 2.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|389848041|ref|YP_006350280.1| - 6.8e-05 23.3 0.1 0.0057 17.1 0.0 2.3 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|389848041|ref|YP_006350280.1| - 0.0079 16.2 0.0 0.094 12.8 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_5 PF13743.6 gi|389848041|ref|YP_006350280.1| - 0.068 12.9 0.1 1.1 9.0 0.0 2.4 2 1 1 3 3 3 0 Thioredoxin Asparaginase_2 PF01112.18 gi|389848040|ref|YP_006350279.1| - 3.1e-62 210.4 6.2 3.5e-62 210.2 6.2 1.0 1 0 0 1 1 1 1 Asparaginase Iso_dh PF00180.20 gi|389848039|ref|YP_006350278.1| - 1.2e-107 360.1 0.0 2e-107 359.4 0.0 1.3 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RHH_1 PF01402.21 gi|389848039|ref|YP_006350278.1| - 0.13 12.2 1.0 1.7 8.7 0.0 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|389848039|ref|YP_006350278.1| - 0.16 11.8 0.1 0.44 10.5 0.1 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Mrr_cat_2 PF13156.6 gi|389848038|ref|YP_006350277.1| - 0.21 11.5 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease PrgI PF12666.7 gi|389848038|ref|YP_006350277.1| - 0.73 10.6 4.1 0.19 12.4 0.6 1.8 2 0 0 2 2 2 0 PrgI family protein DUF3096 PF11295.8 gi|389848037|ref|YP_006350276.1| - 0.21 11.3 1.7 0.41 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) zf-3CxxC_2 PF17180.4 gi|389848036|ref|YP_006350275.1| - 0.02 15.6 0.2 0.033 14.9 0.2 1.5 1 0 0 1 1 1 0 Zinc-binding domain DUF1922 PF09082.10 gi|389848036|ref|YP_006350275.1| - 0.05 13.9 0.1 0.087 13.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) Zn-ribbon_8 PF09723.10 gi|389848036|ref|YP_006350275.1| - 0.078 13.1 0.4 0.17 12.0 0.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain FYDLN_acid PF09538.10 gi|389848036|ref|YP_006350275.1| - 0.088 13.5 3.5 0.18 12.5 3.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_28 PF13518.6 gi|389848036|ref|YP_006350275.1| - 0.097 12.8 1.7 0.12 12.6 0.4 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain zf-Di19 PF05605.12 gi|389848036|ref|YP_006350275.1| - 0.13 12.6 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Jiv90 PF14901.6 gi|389848036|ref|YP_006350275.1| - 0.2 11.8 0.9 0.33 11.1 0.9 1.4 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone HypA PF01155.19 gi|389848036|ref|YP_006350275.1| - 0.25 11.4 0.6 0.41 10.7 0.6 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HMG-CoA_red PF00368.18 gi|389848035|ref|YP_006350274.1| - 2.2e-128 428.4 8.0 2.5e-128 428.2 8.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF1522 PF07482.11 gi|389848035|ref|YP_006350274.1| - 0.018 15.3 1.8 0.018 15.3 1.8 3.4 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1522) Amidohydro_3 PF07969.11 gi|389848034|ref|YP_006350273.1| - 3.2e-87 294.0 10.7 3.2e-87 294.0 10.7 1.3 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|389848034|ref|YP_006350273.1| - 5.6e-18 65.4 0.1 1.4e-12 47.6 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.20 gi|389848034|ref|YP_006350273.1| - 0.027 14.8 0.2 0.13 12.6 0.1 2.2 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain NadA PF02445.16 gi|389848033|ref|YP_006350272.1| - 3.1e-97 325.3 0.0 3.6e-97 325.1 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.24 gi|389848032|ref|YP_006350271.1| - 1.8e-77 261.2 6.4 3.2e-77 260.4 6.4 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|389848032|ref|YP_006350271.1| - 2.8e-12 46.5 0.6 2.3e-05 23.8 0.5 3.7 3 1 1 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389848032|ref|YP_006350271.1| - 1.4e-07 30.9 0.7 4.9e-05 22.6 0.8 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|389848032|ref|YP_006350271.1| - 3e-07 30.2 5.9 8.1e-07 28.7 5.0 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|389848032|ref|YP_006350271.1| - 3.7e-07 30.0 5.1 3.4e-06 26.9 3.8 2.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389848032|ref|YP_006350271.1| - 2.4e-06 26.5 0.0 0.019 13.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|389848032|ref|YP_006350271.1| - 0.00034 20.0 0.2 0.00062 19.1 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|389848032|ref|YP_006350271.1| - 0.0017 17.7 0.0 0.0031 16.8 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|389848032|ref|YP_006350271.1| - 0.0026 17.9 0.4 0.0069 16.6 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|389848032|ref|YP_006350271.1| - 0.013 16.0 0.1 0.31 11.6 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.20 gi|389848032|ref|YP_006350271.1| - 0.029 14.3 0.0 0.064 13.2 0.0 1.5 1 1 0 1 1 1 0 Fumarate reductase flavoprotein C-term NAD_binding_7 PF13241.6 gi|389848032|ref|YP_006350271.1| - 0.043 14.3 0.1 0.087 13.3 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|389848032|ref|YP_006350271.1| - 0.05 12.9 0.1 0.089 12.0 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|389848032|ref|YP_006350271.1| - 0.13 12.1 0.3 0.25 11.2 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain QRPTase_C PF01729.19 gi|389848031|ref|YP_006350270.1| - 4.7e-52 176.2 0.1 6.7e-52 175.7 0.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|389848031|ref|YP_006350270.1| - 1.3e-18 66.8 0.2 3.1e-18 65.6 0.2 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain MFS_1 PF07690.16 gi|389848030|ref|YP_006350269.1| - 5.2e-21 75.0 40.5 5.7e-13 48.5 16.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|389848030|ref|YP_006350269.1| - 0.00062 18.7 14.4 0.014 14.3 7.0 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|389848030|ref|YP_006350269.1| - 0.0046 15.9 0.0 0.03 13.2 0.0 2.2 1 1 0 2 2 2 1 MFS_1 like family OMPdecase PF00215.24 gi|389848029|ref|YP_006350268.1| - 4.2e-31 108.3 0.0 5.4e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DnaJ PF00226.31 gi|389848028|ref|YP_006350267.1| - 9.1e-12 44.9 0.2 1.6e-11 44.1 0.0 1.5 2 0 0 2 2 2 1 DnaJ domain RPT PF13446.6 gi|389848028|ref|YP_006350267.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein VirB3 PF05101.13 gi|389848028|ref|YP_006350267.1| - 0.18 12.0 3.6 0.29 11.4 3.6 1.3 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein CPP1-like PF11833.8 gi|389848028|ref|YP_006350267.1| - 0.56 9.8 7.3 4.4 6.9 1.0 2.1 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like GTP_EFTU PF00009.27 gi|662859563|ref|YP_006350266.2| - 1.6e-35 122.5 0.0 2.6e-35 121.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|662859563|ref|YP_006350266.2| - 2.7e-10 40.5 0.3 7.8e-10 39.0 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|662859563|ref|YP_006350266.2| - 3e-08 33.9 0.1 1.1e-07 32.1 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|662859563|ref|YP_006350266.2| - 0.029 14.5 0.0 0.087 12.9 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|662859563|ref|YP_006350266.2| - 0.089 12.6 0.4 0.69 9.7 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein GDYXXLXY PF14345.6 gi|662859563|ref|YP_006350266.2| - 0.098 12.5 0.0 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 GDYXXLXY protein DprA_WH PF17782.1 gi|389848026|ref|YP_006350265.1| - 0.087 12.9 0.7 0.39 10.9 0.0 2.3 2 1 0 2 2 2 0 DprA winged helix domain MCH PF02289.16 gi|389848025|ref|YP_006350264.1| - 2.5e-113 378.5 0.0 2.8e-113 378.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thiamine_BP PF01910.17 gi|389848024|ref|YP_006350263.1| - 1.2e-22 79.6 0.5 1.4e-22 79.4 0.5 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Pyridoxal_deC PF00282.19 gi|389848023|ref|YP_006350262.1| - 1.9e-72 244.0 0.0 2.3e-72 243.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|389848023|ref|YP_006350262.1| - 6.9e-07 28.8 0.0 9.6e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|389848023|ref|YP_006350262.1| - 0.00031 19.5 0.0 0.014 14.1 0.0 2.1 2 0 0 2 2 2 2 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|389848023|ref|YP_006350262.1| - 0.0059 15.6 0.0 0.036 13.0 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|389848023|ref|YP_006350262.1| - 0.025 13.9 0.1 0.059 12.7 0.0 1.6 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Virul_fac_BrkB PF03631.15 gi|389848022|ref|YP_006350261.1| - 2.9e-38 132.0 23.7 3.5e-38 131.7 23.7 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF373 PF04123.13 gi|389848022|ref|YP_006350261.1| - 1.8 7.9 10.9 39 3.5 8.6 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF373) HypA PF01155.19 gi|389848021|ref|YP_006350260.1| - 0.013 15.5 0.6 0.014 15.4 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Fer4_9 PF13187.6 gi|389848021|ref|YP_006350260.1| - 0.029 14.5 2.8 0.33 11.1 2.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389848021|ref|YP_006350260.1| - 0.21 11.8 4.4 4 7.6 4.4 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain zf-B_box PF00643.24 gi|389848021|ref|YP_006350260.1| - 0.21 11.8 2.1 8.5 6.6 0.1 2.5 2 1 1 3 3 3 0 B-box zinc finger CpXC PF14353.6 gi|389848021|ref|YP_006350260.1| - 0.29 11.2 1.7 3.9 7.6 0.0 2.1 1 1 1 2 2 2 0 CpXC protein Rubredoxin_2 PF18073.1 gi|389848021|ref|YP_006350260.1| - 0.44 10.3 0.1 0.44 10.3 0.1 2.6 3 0 0 3 3 3 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|389848021|ref|YP_006350260.1| - 0.94 9.6 7.4 0.23 11.6 3.6 1.9 2 1 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|389848021|ref|YP_006350260.1| - 6 7.4 7.2 15 6.1 0.9 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 FixS PF03597.15 gi|389848019|ref|YP_006350258.1| - 0.09 12.5 1.1 1.6 8.5 0.0 2.4 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type GAPT PF11770.8 gi|389848019|ref|YP_006350258.1| - 0.3 10.9 0.1 0.41 10.5 0.1 1.2 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) DUF4131 PF13567.6 gi|389848019|ref|YP_006350258.1| - 0.64 9.6 5.8 5.3 6.7 5.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4234 PF14018.6 gi|389848019|ref|YP_006350258.1| - 0.76 9.9 5.1 1.4 9.1 5.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) DUF202 PF02656.15 gi|389848019|ref|YP_006350258.1| - 5.1 7.6 9.6 23 5.5 9.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Methyltrn_RNA_3 PF02598.17 gi|389848018|ref|YP_006350257.1| - 3.6e-65 220.3 0.0 4e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|389848018|ref|YP_006350257.1| - 0.0032 17.2 0.2 0.012 15.4 0.2 1.9 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.22 gi|662859561|ref|YP_006350256.2| - 1.4e-107 359.9 0.1 4.5e-107 358.2 0.1 1.7 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|389848016|ref|YP_006350255.1| - 1.4e-43 148.9 0.1 1.6e-43 148.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|389848015|ref|YP_006350254.1| - 3.8e-15 56.0 4.2 1.3e-14 54.3 4.2 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.18 gi|389848014|ref|YP_006350253.1| - 2e-47 160.5 1.4 3.1e-47 159.9 1.4 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|389848014|ref|YP_006350253.1| - 2.2e-17 62.8 0.0 3.1e-16 59.1 0.0 2.6 3 0 0 3 3 3 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|389848013|ref|YP_006350252.1| - 1e-31 108.7 0.1 1.3e-31 108.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|389848013|ref|YP_006350252.1| - 0.0061 15.7 0.1 0.0062 15.7 0.1 1.1 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|389848012|ref|YP_006350251.1| - 1.7e-19 69.9 0.0 2.3e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e ATP-grasp_5 PF13549.6 gi|389848012|ref|YP_006350251.1| - 0.059 12.8 0.0 0.075 12.5 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain Ribosomal_S3_C PF00189.20 gi|389848011|ref|YP_006350250.1| - 1.3e-20 73.7 0.7 3.1e-20 72.5 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|389848011|ref|YP_006350250.1| - 5.8e-16 58.1 0.0 1.3e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|389848011|ref|YP_006350250.1| - 0.0071 16.4 0.0 0.063 13.4 0.0 2.5 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|389848011|ref|YP_006350250.1| - 0.011 15.5 1.1 0.039 13.8 0.4 2.3 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.23 gi|389848010|ref|YP_006350249.1| - 3.1e-17 62.3 0.1 3.8e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.16 gi|389848009|ref|YP_006350248.1| - 3.7e-28 97.3 0.0 4.3e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|389848008|ref|YP_006350247.1| - 2.1e-24 85.4 1.5 2.6e-24 85.1 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|389848008|ref|YP_006350247.1| - 0.011 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|389848007|ref|YP_006350246.1| - 4.8e-37 126.8 0.7 5.7e-37 126.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e TRAM PF01938.20 gi|389848007|ref|YP_006350246.1| - 0.045 13.8 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 TRAM domain Ribosomal_L26 PF16906.5 gi|389848006|ref|YP_006350245.1| - 4.7e-23 81.4 0.0 5.3e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|389848006|ref|YP_006350245.1| - 6e-08 32.4 0.9 1.1e-07 31.5 0.3 1.8 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.20 gi|389848005|ref|YP_006350244.1| - 2e-20 72.5 0.0 4.3e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|389848005|ref|YP_006350244.1| - 1.1e-11 44.7 0.7 1.8e-11 43.9 0.2 1.7 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.25 gi|389848005|ref|YP_006350244.1| - 0.00043 19.9 0.0 0.00081 19.1 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|389848005|ref|YP_006350244.1| - 0.0024 17.8 1.9 0.0047 16.8 0.6 2.3 2 1 0 2 2 2 1 KOW motif Ribosomal_L5_C PF00673.21 gi|389848004|ref|YP_006350243.1| - 7.5e-20 70.9 0.0 1.5e-19 70.0 0.0 1.6 1 1 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|389848004|ref|YP_006350243.1| - 2.4e-16 59.8 0.0 4.3e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|389848003|ref|YP_006350242.1| - 6.6e-13 48.2 4.5 7.4e-13 48.1 4.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|389848003|ref|YP_006350242.1| - 0.0036 17.2 0.2 0.0042 17.0 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_S8 PF00410.19 gi|389848002|ref|YP_006350241.1| - 1.1e-23 83.5 0.0 1.4e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|389848001|ref|YP_006350240.1| - 2.8e-26 92.0 0.5 1.1e-12 48.5 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.18 gi|389848000|ref|YP_006350239.1| - 6.5e-32 110.2 0.2 3.6e-31 107.8 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|389848000|ref|YP_006350239.1| - 3.2e-13 50.1 0.5 3.2e-13 50.1 0.5 2.7 3 1 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|389848000|ref|YP_006350239.1| - 3.1e-08 33.1 0.5 0.0057 16.5 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|389848000|ref|YP_006350239.1| - 8.5e-07 29.0 0.4 2.7e-06 27.4 0.4 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|389848000|ref|YP_006350239.1| - 2e-06 27.5 0.0 8.2e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|389848000|ref|YP_006350239.1| - 0.00026 21.2 0.8 0.15 12.3 0.1 3.1 2 1 1 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|389848000|ref|YP_006350239.1| - 0.00064 19.9 0.0 0.0037 17.5 0.0 2.2 2 1 1 3 3 3 1 Pathogenicity locus HHH_8 PF14716.6 gi|389848000|ref|YP_006350239.1| - 0.0021 18.4 0.7 0.4 11.1 0.1 2.9 2 1 1 3 3 3 1 Helix-hairpin-helix domain LytR_C PF13399.6 gi|389848000|ref|YP_006350239.1| - 0.034 15.1 1.9 1.2 10.2 0.9 3.0 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator BAF PF02961.14 gi|389848000|ref|YP_006350239.1| - 0.2 12.1 0.0 7.8 7.0 0.0 2.4 1 1 1 2 2 2 0 Barrier to autointegration factor Ribosomal_L19e PF01280.20 gi|389847999|ref|YP_006350238.1| - 4.1e-57 192.3 8.5 4.6e-57 192.1 8.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Lant_dehydr_C PF14028.6 gi|389847999|ref|YP_006350238.1| - 0.055 13.0 1.0 0.061 12.9 1.0 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term Ribosomal_L5e PF17144.4 gi|389847998|ref|YP_006350237.1| - 5.3e-29 101.3 0.0 1.6e-17 63.9 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|389847998|ref|YP_006350237.1| - 1.1e-05 25.8 0.0 1.7e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|662859560|ref|YP_006350236.2| - 2.3e-23 81.4 0.1 3.7e-23 80.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|662859560|ref|YP_006350236.2| - 1.3e-21 76.3 2.4 1.5e-21 76.1 0.3 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 gi|389847996|ref|YP_006350235.1| - 2.6e-13 49.6 0.0 4.8e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e OHCU_decarbox PF09349.10 gi|389847996|ref|YP_006350235.1| - 0.067 13.7 0.0 0.088 13.3 0.0 1.3 1 0 0 1 1 1 0 OHCU decarboxylase Ribosomal_L27A PF00828.19 gi|389847995|ref|YP_006350234.1| - 8.4e-17 62.0 0.2 8.4e-17 62.0 0.2 1.6 2 0 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|389847994|ref|YP_006350233.1| - 1.5e-68 231.3 15.3 1.8e-68 231.0 15.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|389847994|ref|YP_006350233.1| - 1e-12 47.7 0.5 1e-12 47.7 0.5 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p PCMT PF01135.19 gi|389847993|ref|YP_006350232.1| - 4.5e-63 212.8 0.0 5.5e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|389847993|ref|YP_006350232.1| - 8.8e-06 26.3 0.0 1.8e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389847993|ref|YP_006350232.1| - 1.6e-05 24.7 0.0 2.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|389847993|ref|YP_006350232.1| - 4.7e-05 22.6 0.0 7.2e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|389847993|ref|YP_006350232.1| - 0.00018 21.3 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.6 gi|389847993|ref|YP_006350232.1| - 0.00038 20.3 0.0 0.00056 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389847993|ref|YP_006350232.1| - 0.0012 19.4 0.0 0.003 18.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain DUF938 PF06080.12 gi|389847993|ref|YP_006350232.1| - 0.0025 17.6 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|389847993|ref|YP_006350232.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.17 gi|389847993|ref|YP_006350232.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin CMAS PF02353.20 gi|389847993|ref|YP_006350232.1| - 0.18 11.0 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2286 PF10051.9 gi|389847991|ref|YP_006350230.1| - 0.042 13.6 0.1 0.058 13.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2286) Hydrolase_4 PF12146.8 gi|389847990|ref|YP_006350229.1| - 3.8e-12 46.0 0.0 5.7e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|389847990|ref|YP_006350229.1| - 3.9e-10 40.7 9.7 5.3e-10 40.3 9.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389847990|ref|YP_006350229.1| - 4.9e-08 32.9 0.0 0.0026 17.4 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|389847990|ref|YP_006350229.1| - 6.5e-07 29.1 0.0 0.0075 15.8 0.0 2.4 2 1 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|389847990|ref|YP_006350229.1| - 8.8e-06 25.3 0.2 0.0027 17.2 0.1 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|389847990|ref|YP_006350229.1| - 1.5e-05 24.7 0.0 6.1e-05 22.7 0.0 1.8 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|389847990|ref|YP_006350229.1| - 0.011 14.4 0.1 0.53 8.9 0.0 2.6 2 1 1 3 3 3 0 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 gi|389847990|ref|YP_006350229.1| - 0.046 13.8 0.1 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 TAP-like protein FSH1 PF03959.13 gi|389847990|ref|YP_006350229.1| - 0.047 13.3 0.0 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) ResB PF05140.14 gi|389847989|ref|YP_006350228.1| - 0.0091 14.8 0.2 0.024 13.4 0.0 1.7 2 0 0 2 2 2 1 ResB-like family Methyltransf_25 PF13649.6 gi|389847988|ref|YP_006350227.1| - 6.3e-20 71.7 0.0 8.8e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389847988|ref|YP_006350227.1| - 6.2e-16 58.8 0.0 9.5e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389847988|ref|YP_006350227.1| - 6.9e-15 55.1 0.0 9.2e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|389847988|ref|YP_006350227.1| - 4.5e-14 52.6 0.0 6.4e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_12 PF08242.12 gi|389847988|ref|YP_006350227.1| - 3.8e-12 46.8 0.0 5e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389847988|ref|YP_006350227.1| - 1.2e-11 44.7 0.0 1.5e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389847988|ref|YP_006350227.1| - 6.9e-07 29.0 0.0 9.7e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|389847988|ref|YP_006350227.1| - 3.7e-05 23.2 0.0 4.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|389847988|ref|YP_006350227.1| - 0.00013 21.6 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 gi|389847988|ref|YP_006350227.1| - 0.00072 19.0 0.0 0.00095 18.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|389847988|ref|YP_006350227.1| - 0.0027 17.1 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|389847988|ref|YP_006350227.1| - 0.012 15.2 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|389847988|ref|YP_006350227.1| - 0.036 14.0 0.0 0.055 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|389847988|ref|YP_006350227.1| - 0.086 12.2 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UDPG_MGDP_dh_N PF03721.14 gi|389847988|ref|YP_006350227.1| - 0.17 11.5 0.0 0.24 10.9 0.0 1.1 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_9 PF08003.11 gi|389847988|ref|YP_006350227.1| - 0.23 10.3 0.0 0.29 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF938 PF06080.12 gi|389847988|ref|YP_006350227.1| - 0.23 11.2 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Saccharop_dh_N PF04455.12 gi|389847987|ref|YP_006350226.1| - 1.5e-36 124.8 0.1 3.1e-36 123.8 0.1 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|389847987|ref|YP_006350226.1| - 0.00033 20.4 0.2 0.025 14.3 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|389847987|ref|YP_006350226.1| - 0.0027 17.0 0.1 0.058 12.6 0.0 2.2 1 1 1 2 2 2 1 Deoxyhypusine synthase Usp PF00582.26 gi|662859559|ref|YP_006350224.2| - 5.7e-14 52.8 0.1 7.9e-14 52.4 0.1 1.3 1 1 0 1 1 1 1 Universal stress protein family MHB PF16525.5 gi|662859559|ref|YP_006350224.2| - 0.082 13.2 0.0 3.3 8.0 0.0 2.1 2 0 0 2 2 2 0 Haemophore, haem-binding PGF-CTERM PF18204.1 gi|389847984|ref|YP_006350223.1| - 7.9e-08 32.0 7.6 7.9e-08 32.0 7.6 2.4 2 1 0 2 2 2 1 PGF-CTERM motif CARDB PF07705.11 gi|389847984|ref|YP_006350223.1| - 2.6e-06 27.6 3.6 0.00023 21.3 0.5 2.6 2 1 0 2 2 2 2 CARDB GPI-anchored PF10342.9 gi|389847984|ref|YP_006350223.1| - 0.0082 16.9 0.5 1.1 10.0 0.1 2.7 3 0 0 3 3 3 1 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF3426 PF11906.8 gi|389847984|ref|YP_006350223.1| - 0.13 12.4 0.1 0.13 12.4 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3426) DUF1980 PF09323.10 gi|389847983|ref|YP_006350222.1| - 0.0022 17.9 0.5 0.0039 17.1 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1980) DUF202 PF02656.15 gi|389847982|ref|YP_006350221.1| - 0.5 10.8 3.5 2.1 8.8 3.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Zip PF02535.22 gi|389847981|ref|YP_006350220.1| - 2.8e-05 23.5 6.6 2.8e-05 23.5 6.6 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter adh_short PF00106.25 gi|389847980|ref|YP_006350219.1| - 2.2e-37 128.5 0.1 2.5e-37 128.3 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389847980|ref|YP_006350219.1| - 1.8e-34 119.3 0.9 2.2e-34 119.0 0.9 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|389847980|ref|YP_006350219.1| - 3.4e-09 36.8 0.4 4.3e-09 36.5 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389847980|ref|YP_006350219.1| - 6.1e-06 25.9 0.3 0.00015 21.3 0.3 2.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|389847980|ref|YP_006350219.1| - 0.00013 21.2 0.0 0.00058 19.1 0.0 1.9 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|389847980|ref|YP_006350219.1| - 0.0011 19.0 2.6 0.0016 18.4 2.6 1.3 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|389847980|ref|YP_006350219.1| - 0.054 12.6 0.1 0.23 10.5 0.1 1.8 2 0 0 2 2 2 0 RmlD substrate binding domain THF_DHG_CYH_C PF02882.19 gi|389847980|ref|YP_006350219.1| - 0.061 12.6 0.1 0.12 11.7 0.0 1.5 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.13 gi|389847980|ref|YP_006350219.1| - 0.067 12.7 0.5 0.26 10.8 0.5 1.9 1 1 0 1 1 1 0 NmrA-like family 3Beta_HSD PF01073.19 gi|389847980|ref|YP_006350219.1| - 0.39 9.7 0.9 1.5 7.7 0.3 1.9 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Amino_oxidase PF01593.24 gi|389847979|ref|YP_006350218.1| - 3.7e-36 125.4 0.0 4.6e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|389847979|ref|YP_006350218.1| - 3.6e-18 65.5 0.1 1e-17 64.1 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389847979|ref|YP_006350218.1| - 8.2e-13 48.7 0.1 4.8e-08 33.0 0.0 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389847979|ref|YP_006350218.1| - 4e-09 36.1 0.3 4.4e-06 26.1 0.1 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389847979|ref|YP_006350218.1| - 1.4e-08 35.2 0.3 8.2e-06 26.3 0.1 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389847979|ref|YP_006350218.1| - 1.2e-07 30.9 0.0 0.00057 18.7 0.2 2.4 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|389847979|ref|YP_006350218.1| - 3.4e-06 26.4 1.4 7.2e-06 25.3 0.7 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|389847979|ref|YP_006350218.1| - 8.7e-06 25.3 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|389847979|ref|YP_006350218.1| - 0.00028 20.2 0.0 0.004 16.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|389847979|ref|YP_006350218.1| - 0.00071 19.6 0.1 0.94 9.4 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|389847979|ref|YP_006350218.1| - 0.00086 18.6 0.1 0.0013 18.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|389847979|ref|YP_006350218.1| - 0.0013 18.0 0.3 0.0022 17.3 0.3 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|389847979|ref|YP_006350218.1| - 0.0025 17.0 0.4 0.0042 16.2 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A MCRA PF06100.11 gi|389847979|ref|YP_006350218.1| - 0.042 12.7 0.0 0.061 12.1 0.0 1.2 1 0 0 1 1 1 0 MCRA family NAD_binding_7 PF13241.6 gi|389847979|ref|YP_006350218.1| - 0.05 14.0 0.0 0.088 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|389847979|ref|YP_006350218.1| - 0.069 12.4 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|389847979|ref|YP_006350218.1| - 0.071 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|389847979|ref|YP_006350218.1| - 0.077 11.8 0.2 0.12 11.2 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase ApbA PF02558.16 gi|389847979|ref|YP_006350218.1| - 0.1 12.2 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|389847979|ref|YP_006350218.1| - 0.21 11.5 0.1 0.35 10.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UbiA PF01040.18 gi|389847978|ref|YP_006350217.1| - 4.7e-29 101.4 18.7 4.7e-29 101.4 18.7 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Caroten_synth PF04240.12 gi|389847977|ref|YP_006350216.1| - 2.8e-60 203.8 21.1 3.7e-60 203.4 21.1 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein SQS_PSY PF00494.19 gi|389847976|ref|YP_006350215.1| - 5.9e-65 219.4 6.1 7.5e-65 219.0 6.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase zf-Mss51 PF13824.6 gi|389847975|ref|YP_006350214.1| - 0.02 15.0 7.0 0.026 14.6 7.0 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_5 PF01022.20 gi|389847974|ref|YP_006350213.1| - 2.1e-09 37.1 0.1 4.2e-09 36.1 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|389847974|ref|YP_006350213.1| - 6.8e-08 32.5 0.0 1.3e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|389847974|ref|YP_006350213.1| - 0.0012 18.7 0.0 0.0025 17.7 0.0 1.5 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|389847974|ref|YP_006350213.1| - 0.013 15.1 0.1 0.031 13.8 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389847974|ref|YP_006350213.1| - 0.014 15.3 0.1 0.05 13.5 0.1 1.8 1 1 1 2 2 2 0 MarR family TrmB PF01978.19 gi|389847974|ref|YP_006350213.1| - 0.017 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|389847974|ref|YP_006350213.1| - 0.02 14.8 0.1 0.031 14.2 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|389847974|ref|YP_006350213.1| - 0.021 14.8 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|389847974|ref|YP_006350213.1| - 0.035 13.8 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|389847974|ref|YP_006350213.1| - 0.037 14.0 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) GntR PF00392.21 gi|389847974|ref|YP_006350213.1| - 0.04 13.6 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HetR_C PF18460.1 gi|389847974|ref|YP_006350213.1| - 0.072 13.0 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain HTH_29 PF13551.6 gi|389847974|ref|YP_006350213.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2089 PF09862.9 gi|389847974|ref|YP_006350213.1| - 0.13 12.3 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) NDUF_B12 PF08122.12 gi|389847973|ref|YP_006350212.1| - 0.0014 18.6 2.8 0.52 10.4 1.3 2.3 2 0 0 2 2 2 2 NADH-ubiquinone oxidoreductase B12 subunit family DUF2306 PF10067.9 gi|389847973|ref|YP_006350212.1| - 0.01 16.1 2.4 0.01 16.1 2.4 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2306) Spond_N PF06468.13 gi|389847972|ref|YP_006350211.1| - 9.5e-07 29.1 0.0 1.3e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Spondin_N DUF711 PF05167.12 gi|389847972|ref|YP_006350211.1| - 0.021 13.7 0.0 0.68 8.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised ACR (DUF711) TAT_signal PF10518.9 gi|389847972|ref|YP_006350211.1| - 0.38 10.7 3.7 0.92 9.5 3.7 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TraB PF01963.17 gi|389847970|ref|YP_006350209.1| - 1.5e-06 28.4 0.1 0.0011 19.0 0.0 2.5 2 1 0 2 2 2 2 TraB family NRho PF16733.5 gi|389847970|ref|YP_006350209.1| - 0.07 13.2 0.2 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 Rhomboid N-terminal domain HTH_20 PF12840.7 gi|389847967|ref|YP_006350206.1| - 2.8e-07 30.5 0.0 1.9e-06 27.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Elf1 PF05129.13 gi|389847967|ref|YP_006350206.1| - 0.027 14.5 0.3 2.7 8.1 0.0 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Anti-TRAP PF15777.5 gi|389847967|ref|YP_006350206.1| - 0.066 13.2 0.2 0.066 13.2 0.2 2.9 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-TFIIB PF13453.6 gi|389847967|ref|YP_006350206.1| - 0.24 10.7 6.1 0.53 9.7 1.7 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|389847967|ref|YP_006350206.1| - 0.68 9.9 3.8 10 6.1 0.4 2.5 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DnaJ_CXXCXGXG PF00684.19 gi|389847967|ref|YP_006350206.1| - 0.81 10.1 3.9 8.9 6.8 0.4 2.4 2 0 0 2 2 2 0 DnaJ central domain zinc-ribbons_6 PF07191.12 gi|389847967|ref|YP_006350206.1| - 2 8.5 7.8 9 6.4 0.1 2.8 2 1 1 3 3 3 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|389847967|ref|YP_006350206.1| - 4.6 6.8 6.3 18 4.9 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|389847967|ref|YP_006350206.1| - 5.3 7.1 7.8 1.1 9.3 0.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|389847967|ref|YP_006350206.1| - 6.6 6.6 7.0 42 4.0 0.1 3.2 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Peptidase_M23 PF01551.22 gi|389847966|ref|YP_006350205.1| - 1.4e-19 70.0 0.1 3.1e-19 69.0 0.1 1.5 1 0 0 1 1 1 1 Peptidase family M23 Pyridox_ox_2 PF12900.7 gi|389847965|ref|YP_006350204.1| - 3.6e-18 65.9 0.0 4e-18 65.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|389847965|ref|YP_006350204.1| - 0.0039 17.3 0.0 0.0057 16.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF3410 PF11890.8 gi|389847964|ref|YP_006350203.1| - 0.033 14.0 0.1 0.033 14.0 0.1 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3410) bPH_1 PF08000.11 gi|389847962|ref|YP_006350201.1| - 0.054 13.6 0.3 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial PH domain CD4-extracel PF09191.10 gi|389847962|ref|YP_006350201.1| - 0.15 12.5 0.0 22 5.5 0.0 2.4 2 0 0 2 2 2 0 CD4, extracellular bPH_3 PF14470.6 gi|389847962|ref|YP_006350201.1| - 0.19 12.1 0.0 0.74 10.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial PH domain DUF3275 PF11679.8 gi|389847962|ref|YP_006350201.1| - 0.83 9.6 4.2 0.66 9.9 2.8 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3275) DUF2688 PF10892.8 gi|389847961|ref|YP_006350200.1| - 0.048 13.1 0.1 0.16 11.5 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) SNARE_assoc PF09335.11 gi|389847960|ref|YP_006350199.1| - 1.6e-09 38.3 7.5 1.6e-09 38.3 7.5 2.1 1 1 1 2 2 2 1 SNARE associated Golgi protein iPGM_N PF06415.13 gi|389847959|ref|YP_006350198.1| - 2.1e-80 269.2 0.1 3.1e-80 268.7 0.1 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|389847959|ref|YP_006350198.1| - 2.1e-69 233.7 0.0 2.9e-68 229.9 0.0 1.9 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|389847959|ref|YP_006350198.1| - 8.8e-08 32.1 0.1 2.4e-07 30.7 0.0 1.9 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|389847959|ref|YP_006350198.1| - 8.4e-05 22.7 0.0 0.00019 21.6 0.0 1.6 1 0 0 1 1 1 1 PglZ domain Sulfatase PF00884.23 gi|389847959|ref|YP_006350198.1| - 0.0041 16.5 0.8 0.026 13.9 0.8 2.3 1 1 0 1 1 1 1 Sulfatase MAAL_N PF05034.13 gi|389847959|ref|YP_006350198.1| - 0.074 12.7 0.1 0.29 10.8 0.1 2.0 1 1 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus DUF1405 PF07187.11 gi|662859558|ref|YP_006350197.2| - 3.9e-34 117.9 9.4 4.9e-34 117.6 9.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HTH_5 PF01022.20 gi|389847957|ref|YP_006350196.1| - 8.2e-22 76.8 0.9 4.5e-16 58.4 0.1 3.0 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|389847957|ref|YP_006350196.1| - 4.3e-17 61.9 0.9 3.8e-13 49.3 0.1 2.6 3 0 0 3 3 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|389847957|ref|YP_006350196.1| - 1.2e-12 47.5 0.7 5.5e-09 35.8 0.1 3.1 3 0 0 3 3 3 2 MarR family MarR PF01047.22 gi|389847957|ref|YP_006350196.1| - 6.4e-11 42.0 0.0 1.3e-07 31.4 0.1 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|389847957|ref|YP_006350196.1| - 1.1e-10 41.2 0.0 3.9e-06 26.7 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|389847957|ref|YP_006350196.1| - 7.3e-08 32.4 0.5 0.00017 21.6 0.0 2.9 2 0 0 2 2 2 2 DprA winged helix domain Fe_dep_repress PF01325.19 gi|389847957|ref|YP_006350196.1| - 1.7e-07 31.3 0.0 0.00019 21.6 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|389847957|ref|YP_006350196.1| - 3.6e-07 29.6 0.7 3e-06 26.7 0.2 2.7 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|389847957|ref|YP_006350196.1| - 1.6e-06 28.4 0.0 0.0044 17.3 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|389847957|ref|YP_006350196.1| - 2.8e-06 27.2 0.0 8.4e-05 22.5 0.1 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|389847957|ref|YP_006350196.1| - 2.2e-05 24.3 0.1 6.6e-05 22.8 0.0 1.9 2 0 0 2 2 1 1 HTH domain DUF4423 PF14394.6 gi|389847957|ref|YP_006350196.1| - 2.7e-05 23.9 0.0 0.065 12.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|389847957|ref|YP_006350196.1| - 2.9e-05 24.5 0.1 0.00086 19.8 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_CodY PF08222.11 gi|389847957|ref|YP_006350196.1| - 7.2e-05 22.3 0.0 0.00026 20.5 0.0 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain PadR PF03551.14 gi|389847957|ref|YP_006350196.1| - 0.00012 21.9 0.2 0.0025 17.7 0.1 2.9 3 1 0 3 3 2 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|389847957|ref|YP_006350196.1| - 0.00024 20.8 0.8 0.3 10.9 0.1 3.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_47 PF16221.5 gi|389847957|ref|YP_006350196.1| - 0.00039 19.9 0.0 0.27 10.8 0.1 2.4 2 0 0 2 2 2 1 winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|389847957|ref|YP_006350196.1| - 0.0012 18.5 0.0 0.017 14.9 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|389847957|ref|YP_006350196.1| - 0.0015 17.9 0.0 0.93 9.0 0.0 2.9 3 0 0 3 3 2 1 Helix-turn-helix domain of transposase family ISL3 ArsR PF09824.9 gi|389847957|ref|YP_006350196.1| - 0.0022 17.6 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 1 ArsR transcriptional regulator GntR PF00392.21 gi|389847957|ref|YP_006350196.1| - 0.0022 17.6 0.0 0.76 9.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|389847957|ref|YP_006350196.1| - 0.0027 17.4 0.0 0.012 15.4 0.0 2.0 2 0 0 2 2 1 1 HTH DNA binding domain BLACT_WH PF17778.1 gi|389847957|ref|YP_006350196.1| - 0.0034 17.3 0.6 0.62 10.1 0.1 2.5 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain HTH_29 PF13551.6 gi|389847957|ref|YP_006350196.1| - 0.004 17.2 0.1 1.2 9.2 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn helix DUF2250 PF10007.9 gi|389847957|ref|YP_006350196.1| - 0.0042 17.2 0.0 0.06 13.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DDRGK PF09756.9 gi|389847957|ref|YP_006350196.1| - 0.0044 16.6 0.0 0.0089 15.6 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain IF2_N PF04760.15 gi|389847957|ref|YP_006350196.1| - 0.0089 15.8 0.0 1.5 8.7 0.0 3.2 4 0 0 4 4 3 1 Translation initiation factor IF-2, N-terminal region HTH_36 PF13730.6 gi|389847957|ref|YP_006350196.1| - 0.01 15.8 0.0 0.051 13.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.13 gi|389847957|ref|YP_006350196.1| - 0.011 15.5 0.0 0.064 12.9 0.0 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_AsnC-type PF13404.6 gi|389847957|ref|YP_006350196.1| - 0.012 15.5 0.1 0.16 11.8 0.0 3.0 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain HemN_C PF06969.16 gi|389847957|ref|YP_006350196.1| - 0.014 15.5 0.1 5.9 7.0 0.0 3.0 4 0 0 4 4 2 0 HemN C-terminal domain TFIIE_alpha PF02002.17 gi|389847957|ref|YP_006350196.1| - 0.02 14.8 0.0 1.7 8.5 0.0 2.4 2 1 0 2 2 2 0 TFIIE alpha subunit HxlR PF01638.17 gi|389847957|ref|YP_006350196.1| - 0.022 14.6 0.0 0.2 11.5 0.0 2.2 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF2089 PF09862.9 gi|389847957|ref|YP_006350196.1| - 0.027 14.5 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) EAP30 PF04157.16 gi|389847957|ref|YP_006350196.1| - 0.037 13.3 0.0 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family DUF742 PF05331.11 gi|389847957|ref|YP_006350196.1| - 0.043 13.6 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF742) MerR PF00376.23 gi|389847957|ref|YP_006350196.1| - 0.059 13.2 0.2 0.7 9.7 0.1 2.7 2 1 0 2 2 1 0 MerR family regulatory protein HTH_DeoR PF08220.12 gi|389847957|ref|YP_006350196.1| - 0.059 13.1 0.2 0.17 11.7 0.0 1.9 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain Cdc6_C PF09079.11 gi|389847957|ref|YP_006350196.1| - 0.063 13.3 0.1 0.17 11.9 0.0 1.8 2 0 0 2 2 1 0 CDC6, C terminal winged helix domain B-block_TFIIIC PF04182.12 gi|389847957|ref|YP_006350196.1| - 0.079 13.1 0.0 0.68 10.1 0.0 2.1 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC TnsD PF15978.5 gi|389847957|ref|YP_006350196.1| - 0.095 11.7 0.0 0.24 10.4 0.0 1.6 2 0 0 2 2 2 0 Tn7-like transposition protein D DUF2513 PF10711.9 gi|389847957|ref|YP_006350196.1| - 0.11 12.8 0.0 0.31 11.3 0.0 1.8 2 0 0 2 2 1 0 Hypothetical protein (DUF2513) HTH_1 PF00126.27 gi|389847957|ref|YP_006350196.1| - 0.14 12.1 0.0 0.95 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family FaeA PF04703.12 gi|389847957|ref|YP_006350196.1| - 0.17 12.3 0.0 0.37 11.2 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein DUF3792 PF12670.7 gi|389847956|ref|YP_006350195.1| - 0.31 11.2 16.9 0.44 10.7 16.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) PLDc_N PF13396.6 gi|389847955|ref|YP_006350194.1| - 5.1e-07 29.5 10.1 2e-06 27.6 10.1 1.9 1 1 0 1 1 1 1 Phospholipase_D-nuclease N-terminal Bax1-I PF01027.20 gi|389847955|ref|YP_006350194.1| - 0.0035 17.2 5.1 0.0035 17.2 5.1 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 CcmD PF04995.14 gi|389847955|ref|YP_006350194.1| - 0.1 12.7 4.6 3 8.0 0.1 2.3 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Phage_holin_3_6 PF07332.11 gi|389847955|ref|YP_006350194.1| - 0.12 12.4 6.8 0.14 12.2 6.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SUR7 PF06687.12 gi|389847955|ref|YP_006350194.1| - 0.13 11.9 2.3 0.16 11.6 2.3 1.1 1 0 0 1 1 1 0 SUR7/PalI family Tmemb_55A PF09788.9 gi|389847955|ref|YP_006350194.1| - 0.17 11.0 0.7 0.17 10.9 0.7 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A Tad PF13400.6 gi|389847955|ref|YP_006350194.1| - 0.31 11.4 0.2 0.31 11.4 0.2 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Wzy_C_2 PF11846.8 gi|389847955|ref|YP_006350194.1| - 0.33 10.8 3.6 0.36 10.7 3.6 1.0 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal DUF2207 PF09972.9 gi|389847955|ref|YP_006350194.1| - 2.5 6.8 5.7 2.6 6.7 5.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RseC_MucC PF04246.12 gi|389847955|ref|YP_006350194.1| - 5.7 6.9 6.7 13 5.7 2.1 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC FixQ PF05545.11 gi|389847955|ref|YP_006350194.1| - 9.8 6.2 16.4 6.4 6.8 4.2 2.5 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Asparaginase PF00710.20 gi|389847954|ref|YP_006350193.1| - 9.5e-58 194.9 1.3 2.6e-57 193.5 1.5 1.5 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|389847954|ref|YP_006350193.1| - 1.7e-25 89.4 0.3 1.4e-24 86.5 0.0 2.4 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|389847954|ref|YP_006350193.1| - 1.2e-15 56.5 0.0 2.1e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain Acetyltransf_1 PF00583.25 gi|662859557|ref|YP_006350192.2| - 4.2e-09 36.7 0.0 1.2e-08 35.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|662859557|ref|YP_006350192.2| - 1.2e-08 35.7 2.0 3.5e-08 34.2 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|662859557|ref|YP_006350192.2| - 0.00063 19.8 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|662859557|ref|YP_006350192.2| - 0.0025 18.2 0.0 0.0047 17.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|662859557|ref|YP_006350192.2| - 0.0055 16.8 0.1 0.074 13.1 0.1 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|662859557|ref|YP_006350192.2| - 0.026 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|662859557|ref|YP_006350192.2| - 0.037 14.0 0.0 0.071 13.1 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein EthD PF07110.11 gi|662859557|ref|YP_006350192.2| - 0.073 14.2 5.0 0.52 11.5 0.1 3.4 2 1 2 4 4 4 0 EthD domain Acetyltransf_4 PF13420.7 gi|662859557|ref|YP_006350192.2| - 0.16 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|662859557|ref|YP_006350192.2| - 2.4 8.3 12.8 0.05 13.8 0.9 2.9 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain PAS_4 PF08448.10 gi|389847952|ref|YP_006350191.1| - 6.5e-06 26.4 0.1 2e-05 24.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold Cadherin_pro PF08758.11 gi|389847952|ref|YP_006350191.1| - 0.0081 16.3 0.1 0.044 14.0 0.0 2.1 2 0 0 2 2 2 1 Cadherin prodomain like HisKA PF00512.25 gi|389847952|ref|YP_006350191.1| - 0.071 13.2 0.3 0.16 12.0 0.3 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain CPSase_sm_chain PF00988.22 gi|389847951|ref|YP_006350190.1| - 1.1e-36 125.5 0.0 2.7e-35 121.0 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|389847951|ref|YP_006350190.1| - 1.3e-35 122.9 0.0 1.8e-35 122.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|389847951|ref|YP_006350190.1| - 2.5e-07 30.7 0.6 8.5e-05 22.4 0.6 2.5 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|389847951|ref|YP_006350190.1| - 0.0044 16.8 0.1 0.0073 16.1 0.1 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family HTH_AsnC-type PF13404.6 gi|389847950|ref|YP_006350189.1| - 5.1e-18 64.6 1.6 9.1e-18 63.8 1.6 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389847950|ref|YP_006350189.1| - 2.5e-17 62.1 0.3 4.2e-17 61.4 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|389847950|ref|YP_006350189.1| - 8.1e-10 38.5 1.4 8.1e-10 38.5 1.4 1.5 2 0 0 2 2 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|389847950|ref|YP_006350189.1| - 3.1e-06 26.9 0.0 6.6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389847950|ref|YP_006350189.1| - 3.9e-06 26.8 0.1 9.4e-06 25.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389847950|ref|YP_006350189.1| - 4.3e-05 23.3 0.5 8.1e-05 22.4 0.1 1.7 2 0 0 2 2 1 1 MarR family MarR PF01047.22 gi|389847950|ref|YP_006350189.1| - 6.4e-05 22.8 0.1 0.00036 20.4 0.0 2.0 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|389847950|ref|YP_006350189.1| - 0.0005 19.7 0.1 0.0022 17.6 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 NapD PF03927.13 gi|389847950|ref|YP_006350189.1| - 0.00051 20.0 1.2 0.0012 18.8 1.1 1.7 2 0 0 2 2 2 1 NapD protein HTH_23 PF13384.6 gi|389847950|ref|YP_006350189.1| - 0.00054 19.7 0.1 0.00089 19.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|389847950|ref|YP_006350189.1| - 0.0023 17.5 0.3 0.0037 16.9 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|389847950|ref|YP_006350189.1| - 0.0027 17.7 0.3 0.0068 16.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|389847950|ref|YP_006350189.1| - 0.0033 16.8 0.1 0.0073 15.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 PaaX PF07848.12 gi|389847950|ref|YP_006350189.1| - 0.0036 17.5 0.1 0.006 16.8 0.1 1.5 1 0 0 1 1 1 1 PaaX-like protein HTH_DeoR PF08220.12 gi|389847950|ref|YP_006350189.1| - 0.0036 17.0 0.3 0.007 16.1 0.3 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|389847950|ref|YP_006350189.1| - 0.0041 17.0 0.0 0.0099 15.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|389847950|ref|YP_006350189.1| - 0.0072 16.2 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|389847950|ref|YP_006350189.1| - 0.0081 16.3 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389847950|ref|YP_006350189.1| - 0.014 15.3 0.1 0.14 12.1 0.1 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|389847950|ref|YP_006350189.1| - 0.017 14.7 0.3 0.029 13.9 0.3 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|389847950|ref|YP_006350189.1| - 0.018 15.0 0.2 0.038 14.0 0.2 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|389847950|ref|YP_006350189.1| - 0.02 14.5 0.1 0.047 13.3 0.0 1.7 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.19 gi|389847950|ref|YP_006350189.1| - 0.025 14.1 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_27 PF13463.6 gi|389847950|ref|YP_006350189.1| - 0.046 14.2 0.7 0.074 13.6 0.2 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|389847950|ref|YP_006350189.1| - 0.072 12.9 0.4 0.12 12.1 0.4 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|389847950|ref|YP_006350189.1| - 0.089 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Stk19 PF10494.9 gi|389847950|ref|YP_006350189.1| - 0.1 12.3 0.2 0.094 12.4 0.2 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HTH_40 PF14493.6 gi|389847950|ref|YP_006350189.1| - 0.14 12.7 0.1 0.26 11.8 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain NUDIX PF00293.28 gi|389847949|ref|YP_006350188.1| - 1.3e-14 54.3 0.7 1.7e-14 54.0 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain Sigma70_r3 PF04539.16 gi|389847949|ref|YP_006350188.1| - 0.045 13.9 1.0 0.49 10.5 0.1 2.6 3 0 0 3 3 3 0 Sigma-70 region 3 Prok-JAB PF14464.6 gi|389847948|ref|YP_006350187.1| - 1.6e-21 76.2 0.2 2e-21 76.0 0.2 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|389847948|ref|YP_006350187.1| - 1.2e-09 38.2 0.0 1.6e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease UPF0172 PF03665.13 gi|389847948|ref|YP_006350187.1| - 0.0048 17.0 0.0 0.0061 16.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0172) DUF4329 PF14220.6 gi|389847948|ref|YP_006350187.1| - 0.094 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4329) adh_short PF00106.25 gi|389847947|ref|YP_006350186.1| - 1.3e-37 129.2 0.0 1.9e-37 128.6 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389847947|ref|YP_006350186.1| - 5.3e-34 117.8 0.0 6.8e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|389847947|ref|YP_006350186.1| - 5.3e-06 26.1 0.0 6.1e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|389847947|ref|YP_006350186.1| - 0.0007 19.5 0.1 0.00082 19.3 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|389847947|ref|YP_006350186.1| - 0.081 12.8 0.2 0.42 10.5 0.2 1.9 1 1 0 1 1 1 0 KR domain Aminotran_5 PF00266.19 gi|389847946|ref|YP_006350185.1| - 1.4e-22 80.1 0.0 2e-22 79.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|389847946|ref|YP_006350185.1| - 0.00018 20.2 0.0 0.00026 19.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|389847946|ref|YP_006350185.1| - 0.0003 20.1 0.0 0.00048 19.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II AIRS_C PF02769.22 gi|662859556|ref|YP_006350184.2| - 1.4e-19 70.7 0.5 2e-19 70.2 0.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|662859556|ref|YP_006350184.2| - 4.4e-10 40.1 0.7 2.1e-09 37.9 0.3 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Abhydrolase_1 PF00561.20 gi|662859555|ref|YP_006350183.2| - 1.6e-27 96.8 0.3 9.8e-27 94.2 0.3 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|662859555|ref|YP_006350183.2| - 1.9e-20 74.4 12.7 2.3e-20 74.2 12.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|662859555|ref|YP_006350183.2| - 1.4e-14 53.9 0.0 1.4e-13 50.7 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|662859555|ref|YP_006350183.2| - 0.00012 20.9 0.0 0.00031 19.5 0.0 1.6 2 0 0 2 2 2 1 Ndr family DUF953 PF06110.11 gi|662859555|ref|YP_006350183.2| - 0.043 13.4 0.1 0.19 11.4 0.0 2.1 3 0 0 3 3 3 0 Eukaryotic protein of unknown function (DUF953) Frankia_peptide PF14407.6 gi|389847943|ref|YP_006350182.1| - 0.12 12.4 1.6 0.63 10.1 0.3 2.4 2 1 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Cons_hypoth698 PF03601.14 gi|389847942|ref|YP_006350181.1| - 5.5e-54 183.1 21.6 7.1e-54 182.7 21.6 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 ADK PF00406.22 gi|662859554|ref|YP_006350179.2| - 2.5e-44 151.0 0.0 3.1e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|662859554|ref|YP_006350179.2| - 6.7e-22 78.4 0.1 2.1e-21 76.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|662859554|ref|YP_006350179.2| - 5.8e-17 61.4 0.7 9.7e-17 60.7 0.7 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|662859554|ref|YP_006350179.2| - 4.7e-07 30.4 0.0 9.4e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|662859554|ref|YP_006350179.2| - 0.0003 20.9 0.0 0.00063 19.9 0.0 1.5 2 0 0 2 2 1 1 AAA domain HypA PF01155.19 gi|662859554|ref|YP_006350179.2| - 0.012 15.6 0.1 0.018 15.1 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ploopntkinase3 PF18751.1 gi|662859554|ref|YP_006350179.2| - 0.012 15.6 0.0 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 Zn-ribbon_8 PF09723.10 gi|662859554|ref|YP_006350179.2| - 0.012 15.7 2.2 0.024 14.7 2.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|662859554|ref|YP_006350179.2| - 0.015 15.3 1.0 0.041 13.9 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon AAA_28 PF13521.6 gi|662859554|ref|YP_006350179.2| - 0.016 15.5 0.1 0.029 14.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain zf-C4_Topoisom PF01396.19 gi|662859554|ref|YP_006350179.2| - 0.018 14.8 0.2 0.46 10.3 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger NinF PF05810.12 gi|662859554|ref|YP_006350179.2| - 0.019 14.8 0.3 0.045 13.6 0.3 1.7 1 0 0 1 1 1 0 NinF protein DUF3039 PF11238.8 gi|662859554|ref|YP_006350179.2| - 0.02 14.6 0.2 0.045 13.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-IS66 PF13005.7 gi|662859554|ref|YP_006350179.2| - 0.027 14.9 3.0 0.27 11.7 0.5 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PAS_7 PF12860.7 gi|662859554|ref|YP_006350179.2| - 0.028 14.6 0.0 0.071 13.3 0.0 1.6 2 0 0 2 2 1 0 PAS fold DUF1451 PF07295.11 gi|662859554|ref|YP_006350179.2| - 0.063 13.3 2.4 0.1 12.7 1.8 1.6 1 1 0 1 1 1 0 Zinc-ribbon containing domain AAA_22 PF13401.6 gi|662859554|ref|YP_006350179.2| - 0.074 13.3 0.0 0.56 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|662859554|ref|YP_006350179.2| - 0.086 12.5 0.0 0.18 11.4 0.0 1.6 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|662859554|ref|YP_006350179.2| - 0.097 13.2 0.0 0.21 12.1 0.0 1.7 2 0 0 2 2 2 0 ABC transporter Thymidylate_kin PF02223.17 gi|662859554|ref|YP_006350179.2| - 0.11 12.2 0.3 15 5.2 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase zf-RRN7 PF11781.8 gi|662859554|ref|YP_006350179.2| - 0.11 12.2 1.5 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 GFA PF04828.14 gi|662859554|ref|YP_006350179.2| - 0.11 12.8 0.7 7.3 7.0 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.6 gi|662859554|ref|YP_006350179.2| - 0.16 11.4 1.0 13 5.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RuvB_N PF05496.12 gi|662859554|ref|YP_006350179.2| - 0.18 11.5 0.1 0.4 10.4 0.1 1.7 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain OrfB_Zn_ribbon PF07282.11 gi|662859554|ref|YP_006350179.2| - 0.19 11.7 0.7 0.36 10.8 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|662859554|ref|YP_006350179.2| - 0.2 11.2 4.9 0.71 9.4 4.7 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|662859554|ref|YP_006350179.2| - 0.29 11.1 3.2 9.4 6.3 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.6 gi|662859554|ref|YP_006350179.2| - 0.4 11.2 1.9 8 7.1 1.8 2.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain UPF0547 PF10571.9 gi|662859554|ref|YP_006350179.2| - 0.87 9.7 4.6 2 8.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.6 gi|662859554|ref|YP_006350179.2| - 1.4 8.9 4.8 4.7 7.2 0.3 2.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 EMC3_TMCO1 PF01956.16 gi|662859553|ref|YP_006350178.2| - 1.4e-51 174.6 0.9 1.7e-51 174.3 0.9 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|662859553|ref|YP_006350178.2| - 1.3e-06 28.4 0.2 2.2e-06 27.7 0.2 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF4890 PF16231.5 gi|662859553|ref|YP_006350178.2| - 0.0048 17.4 3.2 0.0075 16.7 3.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4890) DUF530 PF04409.12 gi|662859553|ref|YP_006350178.2| - 0.18 10.1 0.3 0.23 9.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF530) AAA_18 PF13238.6 gi|662859552|ref|YP_006350177.2| - 1.5e-16 61.1 0.1 1.9e-16 60.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|662859552|ref|YP_006350177.2| - 3.1e-16 60.0 2.9 4e-14 53.1 2.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|662859552|ref|YP_006350177.2| - 1.7e-13 51.2 0.1 3.8e-13 50.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|662859552|ref|YP_006350177.2| - 9e-10 38.6 1.2 2.7e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|662859552|ref|YP_006350177.2| - 1.9e-08 34.6 0.0 4.7e-08 33.3 0.0 1.8 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|662859552|ref|YP_006350177.2| - 1.4e-07 31.7 0.3 6.3e-06 26.4 0.3 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|662859552|ref|YP_006350177.2| - 0.00015 21.9 1.4 0.0018 18.4 1.4 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.29 gi|662859552|ref|YP_006350177.2| - 0.00035 21.0 0.0 0.00055 20.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|662859552|ref|YP_006350177.2| - 0.00046 20.5 0.3 0.00087 19.6 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|662859552|ref|YP_006350177.2| - 0.0014 18.9 0.0 0.0019 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|662859552|ref|YP_006350177.2| - 0.0027 17.4 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_16 PF13191.6 gi|662859552|ref|YP_006350177.2| - 0.0032 17.9 0.6 0.0049 17.3 0.6 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|662859552|ref|YP_006350177.2| - 0.0036 17.1 0.9 0.065 13.0 0.1 2.2 1 1 1 2 2 2 1 AAA domain KTI12 PF08433.10 gi|662859552|ref|YP_006350177.2| - 0.0058 16.1 0.0 0.0083 15.6 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|662859552|ref|YP_006350177.2| - 0.016 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_5 PF07728.14 gi|662859552|ref|YP_006350177.2| - 0.025 14.6 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|662859552|ref|YP_006350177.2| - 0.051 14.0 0.0 0.087 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|662859552|ref|YP_006350177.2| - 0.061 12.6 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin dNK PF01712.19 gi|662859552|ref|YP_006350177.2| - 0.085 12.7 0.0 0.75 9.6 0.0 2.1 1 1 1 2 2 2 0 Deoxynucleoside kinase ABC_tran PF00005.27 gi|662859552|ref|YP_006350177.2| - 0.098 13.2 0.0 0.13 12.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|662859552|ref|YP_006350177.2| - 0.1 11.7 0.1 0.13 11.2 0.1 1.3 1 1 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.22 gi|662859552|ref|YP_006350177.2| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|662859552|ref|YP_006350177.2| - 0.14 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Hydin_ADK PF17213.3 gi|662859552|ref|YP_006350177.2| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain ATP_bind_1 PF03029.17 gi|662859552|ref|YP_006350177.2| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Rad17 PF03215.15 gi|662859552|ref|YP_006350177.2| - 0.19 11.7 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain TruB_C_2 PF16198.5 gi|389847937|ref|YP_006350176.1| - 5.2e-22 77.8 0.6 1.2e-21 76.6 0.0 1.9 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|389847937|ref|YP_006350176.1| - 4.8e-21 75.7 0.2 1.1e-11 45.3 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.20 gi|389847937|ref|YP_006350176.1| - 1.2e-09 38.0 0.3 2.1e-09 37.2 0.3 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|389847937|ref|YP_006350176.1| - 1.1e-08 35.0 0.1 2.5e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain DDE_Tnp_IS1595 PF12762.7 gi|389847934|ref|YP_006350173.1| - 2.5e-08 34.1 0.0 5.6e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 ISXO2-like transposase domain HTH_38 PF13936.6 gi|389847934|ref|YP_006350173.1| - 0.0017 18.1 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|389847934|ref|YP_006350173.1| - 0.048 13.6 0.9 0.13 12.2 0.9 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|389847934|ref|YP_006350173.1| - 0.057 13.2 0.8 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain eIF-5_eIF-2B PF01873.17 gi|389847934|ref|YP_006350173.1| - 0.059 13.2 0.0 0.69 9.8 0.1 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HTH_29 PF13551.6 gi|389847934|ref|YP_006350173.1| - 0.17 11.9 0.1 0.17 11.9 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn helix DNA_RNApol_7kD PF03604.13 gi|389847934|ref|YP_006350173.1| - 0.26 11.0 1.5 0.7 9.6 1.5 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|389847934|ref|YP_006350173.1| - 2.7 7.5 7.6 2 7.9 4.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain DUF543 PF04418.12 gi|389847931|ref|YP_006350170.1| - 0.14 12.1 0.3 0.18 11.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF543) MMPL PF03176.15 gi|389847930|ref|YP_006350169.1| - 3e-32 111.9 41.8 1.1e-18 67.3 11.6 3.0 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|389847930|ref|YP_006350169.1| - 2.5e-10 40.4 7.4 3.5e-07 30.2 0.6 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|389847930|ref|YP_006350169.1| - 1.1e-05 23.8 4.2 1.1e-05 23.8 4.2 2.2 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|389847930|ref|YP_006350169.1| - 0.002 17.5 22.6 0.12 11.7 9.8 2.5 2 0 0 2 2 2 2 Protein export membrane protein DUF2177 PF09945.9 gi|389847929|ref|YP_006350168.1| - 0.0067 16.5 0.8 0.0067 16.5 0.8 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2177) Zip PF02535.22 gi|389847929|ref|YP_006350168.1| - 1.2 8.3 7.8 1.5 7.9 7.8 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter DUF3007 PF11460.8 gi|389847929|ref|YP_006350168.1| - 1.6 9.0 6.8 3 8.1 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) DUF3040 PF11239.8 gi|389847929|ref|YP_006350168.1| - 5.2 7.4 18.0 0.37 11.1 7.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF202 PF02656.15 gi|389847929|ref|YP_006350168.1| - 6.3 7.3 12.8 4.8 7.7 5.1 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF202) HTH_20 PF12840.7 gi|389847928|ref|YP_006350167.1| - 8.4e-11 41.8 0.1 1.2e-10 41.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|389847928|ref|YP_006350167.1| - 1.8e-05 24.6 0.0 3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|389847928|ref|YP_006350167.1| - 2.9e-05 23.8 0.4 4e-05 23.4 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|389847928|ref|YP_006350167.1| - 0.00024 20.8 0.0 0.00036 20.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389847928|ref|YP_006350167.1| - 0.00025 20.9 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|389847928|ref|YP_006350167.1| - 0.00031 20.7 0.0 0.00055 20.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|389847928|ref|YP_006350167.1| - 0.0056 16.2 0.1 0.01 15.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.19 gi|389847928|ref|YP_006350167.1| - 0.0057 16.8 0.0 0.0076 16.4 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|389847928|ref|YP_006350167.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|389847928|ref|YP_006350167.1| - 0.015 15.1 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|389847928|ref|YP_006350167.1| - 0.03 14.1 0.1 0.052 13.4 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_41 PF14502.6 gi|389847928|ref|YP_006350167.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|389847928|ref|YP_006350167.1| - 0.11 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_ECF PF07638.11 gi|389847928|ref|YP_006350167.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor HTH_29 PF13551.6 gi|389847928|ref|YP_006350167.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|389847928|ref|YP_006350167.1| - 0.17 12.0 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain CopD PF05425.13 gi|389847927|ref|YP_006350166.1| - 0.0022 18.4 13.1 0.0022 18.4 13.1 1.9 1 1 1 2 2 2 1 Copper resistance protein D PetL PF05115.14 gi|389847927|ref|YP_006350166.1| - 0.057 13.4 2.7 0.057 13.4 2.7 2.7 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) DUF4149 PF13664.6 gi|389847927|ref|YP_006350166.1| - 0.3 11.4 9.6 0.16 12.3 6.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) zf-AN1 PF01428.16 gi|389847926|ref|YP_006350165.1| - 1e-08 35.2 7.5 1.2e-08 34.9 6.8 1.5 1 1 0 1 1 1 1 AN1-like Zinc finger C5HCH PF17982.1 gi|389847926|ref|YP_006350165.1| - 0.019 15.1 3.8 0.03 14.5 3.8 1.4 1 0 0 1 1 1 0 NSD Cys-His rich domain FYVE PF01363.21 gi|389847926|ref|YP_006350165.1| - 0.049 13.8 0.1 0.059 13.5 0.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger C1_2 PF03107.16 gi|389847926|ref|YP_006350165.1| - 0.063 13.6 4.8 0.12 12.7 4.8 1.4 1 0 0 1 1 1 0 C1 domain SOAR PF16533.5 gi|389847926|ref|YP_006350165.1| - 0.12 12.4 0.2 0.21 11.6 0.2 1.3 1 0 0 1 1 1 0 STIM1 Orai1-activating region CAP PF00188.26 gi|389847925|ref|YP_006350164.1| - 4.5e-19 69.5 0.1 7.4e-19 68.8 0.1 1.4 1 0 0 1 1 1 1 Cysteine-rich secretory protein family HPP PF04982.13 gi|389847924|ref|YP_006350163.1| - 1.3e-15 57.7 10.1 2e-15 57.0 10.1 1.3 1 0 0 1 1 1 1 HPP family Acetyltransf_3 PF13302.7 gi|389847923|ref|YP_006350162.1| - 1.9e-29 103.1 0.0 2.5e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389847923|ref|YP_006350162.1| - 1.1e-11 45.0 0.0 1.4e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|389847923|ref|YP_006350162.1| - 9.7e-08 32.3 0.0 1.2e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|389847923|ref|YP_006350162.1| - 9.4e-07 28.6 0.0 5.4e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389847923|ref|YP_006350162.1| - 0.01 15.8 0.0 0.014 15.3 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389847923|ref|YP_006350162.1| - 0.027 14.9 0.0 0.047 14.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Semialdhyde_dh PF01118.24 gi|389847922|ref|YP_006350161.1| - 9.2e-34 116.5 0.0 1.7e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|389847922|ref|YP_006350161.1| - 6.7e-30 104.5 0.0 9.9e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|389847922|ref|YP_006350161.1| - 0.00022 21.3 0.0 0.00041 20.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|389847922|ref|YP_006350161.1| - 0.00038 21.2 0.0 0.00076 20.2 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_C PF02800.20 gi|389847922|ref|YP_006350161.1| - 0.014 15.0 0.0 0.073 12.7 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|389847922|ref|YP_006350161.1| - 0.015 16.1 0.0 0.025 15.4 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|389847922|ref|YP_006350161.1| - 0.04 14.2 0.0 0.067 13.4 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|389847922|ref|YP_006350161.1| - 0.099 13.3 0.0 0.19 12.4 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|389847921|ref|YP_006350160.1| - 1.6e-74 250.0 0.1 2.4e-74 249.4 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|389847921|ref|YP_006350160.1| - 1.5e-45 154.3 1.9 4.7e-45 152.6 0.2 2.6 3 0 0 3 3 3 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|389847921|ref|YP_006350160.1| - 4.9e-37 126.3 0.0 1.1e-36 125.2 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|389847921|ref|YP_006350160.1| - 3.4e-16 58.8 4.1 3.4e-16 58.8 4.1 2.7 3 0 0 3 3 2 1 Biotin-requiring enzyme Dala_Dala_lig_C PF07478.13 gi|389847921|ref|YP_006350160.1| - 1.2e-09 38.0 0.0 2.6e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Biotin_lipoyl_2 PF13533.6 gi|389847921|ref|YP_006350160.1| - 3.5e-09 36.4 1.7 0.0018 18.0 0.0 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|389847921|ref|YP_006350160.1| - 1.6e-08 34.4 0.1 7.3e-08 32.2 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|389847921|ref|YP_006350160.1| - 0.0014 18.7 0.0 0.0033 17.5 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|389847921|ref|YP_006350160.1| - 0.0088 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|389847921|ref|YP_006350160.1| - 0.01 15.3 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain LAL_C2 PF18603.1 gi|389847921|ref|YP_006350160.1| - 0.013 15.7 0.4 0.5 10.6 0.0 3.4 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 ATP-grasp_2 PF08442.10 gi|389847921|ref|YP_006350160.1| - 0.016 14.8 1.0 0.56 9.7 0.1 2.3 2 0 0 2 2 2 0 ATP-grasp domain B12-binding PF02310.19 gi|389847921|ref|YP_006350160.1| - 0.018 15.0 0.6 41 4.2 0.0 3.6 3 0 0 3 3 3 0 B12 binding domain GCV_H PF01597.19 gi|389847921|ref|YP_006350160.1| - 0.027 14.3 1.4 0.059 13.3 0.6 1.9 2 0 0 2 2 2 0 Glycine cleavage H-protein Oxidored_nitro PF00148.19 gi|389847921|ref|YP_006350160.1| - 0.031 13.0 0.7 0.61 8.8 0.1 2.2 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase ATPgrasp_ST PF14397.6 gi|389847921|ref|YP_006350160.1| - 0.047 12.9 0.0 0.087 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp HlyD_D23 PF16576.5 gi|389847921|ref|YP_006350160.1| - 0.054 12.7 0.4 3.1 6.9 0.0 2.4 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATPgrasp_Ter PF15632.6 gi|389847921|ref|YP_006350160.1| - 0.059 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon DUF4019 PF13211.6 gi|389847921|ref|YP_006350160.1| - 0.088 13.2 0.7 0.24 11.8 0.1 2.1 3 0 0 3 3 1 0 Protein of unknown function (DUF4019) HlyD_3 PF13437.6 gi|389847921|ref|YP_006350160.1| - 0.11 13.2 0.9 7.3 7.4 0.2 3.1 3 0 0 3 3 3 0 HlyD family secretion protein HTH_11 PF08279.12 gi|389847920|ref|YP_006350159.1| - 9.6e-12 44.7 0.0 1.6e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 gi|389847920|ref|YP_006350159.1| - 5.4e-10 39.3 0.0 7.8e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|389847920|ref|YP_006350159.1| - 3.7e-08 33.1 0.2 6.5e-08 32.4 0.2 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.7 gi|389847920|ref|YP_006350159.1| - 2.2e-06 27.6 0.0 4.8e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|389847920|ref|YP_006350159.1| - 3.1e-06 26.6 0.0 6.9e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389847920|ref|YP_006350159.1| - 4.5e-05 23.2 0.2 0.00024 20.9 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.20 gi|389847920|ref|YP_006350159.1| - 6.3e-05 22.8 0.0 0.00013 21.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|389847920|ref|YP_006350159.1| - 0.0062 16.3 1.7 0.02 14.7 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389847920|ref|YP_006350159.1| - 0.012 15.8 0.0 0.03 14.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|389847920|ref|YP_006350159.1| - 0.017 15.0 0.0 0.047 13.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|389847920|ref|YP_006350159.1| - 0.033 14.2 0.0 0.094 12.7 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|389847920|ref|YP_006350159.1| - 0.07 13.3 0.1 0.19 11.9 0.1 1.8 1 0 0 1 1 1 0 DprA winged helix domain HTH_10 PF04967.12 gi|389847920|ref|YP_006350159.1| - 0.098 12.5 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain DUF5473 PF17567.2 gi|389847920|ref|YP_006350159.1| - 0.1 12.9 0.2 0.23 11.7 0.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5473) HTH_1 PF00126.27 gi|389847920|ref|YP_006350159.1| - 0.1 12.5 0.0 0.32 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|389847920|ref|YP_006350159.1| - 0.15 12.1 0.9 3.7 7.7 0.0 3.0 3 0 0 3 3 3 0 Winged helix-turn helix YdaS_antitoxin PF15943.5 gi|389847920|ref|YP_006350159.1| - 0.19 11.6 0.9 1 9.3 0.0 2.4 3 0 0 3 3 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Usp PF00582.26 gi|389847919|ref|YP_006350158.1| - 9.4e-39 133.1 0.8 1.4e-38 132.6 0.8 1.2 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|389847918|ref|YP_006350157.1| - 2.1e-27 96.3 0.2 1.7e-25 90.1 0.2 2.3 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|389847918|ref|YP_006350157.1| - 6e-08 32.4 0.0 8.6e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|389847918|ref|YP_006350157.1| - 4.3e-05 23.2 5.3 0.00011 21.8 0.8 2.2 1 1 1 2 2 2 2 Amidohydrolase family HD PF01966.22 gi|389847917|ref|YP_006350156.1| - 1.2e-10 41.7 2.9 2.6e-10 40.6 2.9 1.7 1 0 0 1 1 1 1 HD domain DotD PF16816.5 gi|389847917|ref|YP_006350156.1| - 0.019 14.9 0.4 0.047 13.6 0.0 1.8 2 0 0 2 2 2 0 DotD protein UPF0052 PF01933.18 gi|389847916|ref|YP_006350155.1| - 2.8e-47 161.4 0.0 3.5e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|389847915|ref|YP_006350154.1| - 2.1e-09 37.0 0.2 1.2e-08 34.5 0.2 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|389847915|ref|YP_006350154.1| - 0.0076 15.7 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Radical_SAM PF04055.21 gi|389847915|ref|YP_006350154.1| - 0.064 13.6 0.1 2.1 8.7 0.0 2.4 1 1 1 2 2 2 0 Radical SAM superfamily Ribul_P_3_epim PF00834.19 gi|389847915|ref|YP_006350154.1| - 0.073 12.4 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|389847915|ref|YP_006350154.1| - 0.15 11.1 0.4 0.19 10.7 0.4 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain CitG PF01874.16 gi|389847914|ref|YP_006350153.1| - 3.9e-62 210.5 4.9 4.4e-62 210.3 4.9 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|389847913|ref|YP_006350152.1| - 2.8e-40 137.9 0.0 3.3e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Phage_P2_GpE PF06528.12 gi|389847913|ref|YP_006350152.1| - 0.025 14.1 0.9 0.045 13.3 0.9 1.4 1 0 0 1 1 1 0 Phage P2 GpE Ribosomal_S17e PF00833.18 gi|389847912|ref|YP_006350151.1| - 6.8e-13 48.6 0.1 7.4e-13 48.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.6 gi|389847912|ref|YP_006350151.1| - 0.059 13.8 0.0 0.061 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) GDPD PF03009.17 gi|389847911|ref|YP_006350150.1| - 2.7e-35 122.4 0.0 1.3e-32 113.6 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Herpes_UL56 PF04534.12 gi|389847910|ref|YP_006350149.1| - 0.011 15.3 0.4 0.19 11.2 0.2 2.0 1 1 1 2 2 2 0 Herpesvirus UL56 protein OAD_gamma PF04277.13 gi|389847910|ref|YP_006350149.1| - 0.49 11.0 3.7 0.45 11.2 0.5 2.0 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.22 gi|389847909|ref|YP_006350148.1| - 3.2e-202 672.6 0.0 3.6e-202 672.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|389847909|ref|YP_006350148.1| - 0.013 15.0 0.1 0.072 12.6 0.0 2.0 2 0 0 2 2 2 0 Malonate decarboxylase gamma subunit (MdcE) SNF PF00209.18 gi|389847908|ref|YP_006350147.1| - 1.3e-46 159.4 27.0 4.6e-25 88.3 4.7 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Gaa1 PF04114.14 gi|389847908|ref|YP_006350147.1| - 4 6.3 8.0 42 3.0 8.0 2.1 1 1 0 1 1 1 0 Gaa1-like, GPI transamidase component SNF PF00209.18 gi|389847907|ref|YP_006350146.1| - 3.1e-52 178.0 35.4 7.6e-31 107.4 17.3 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short_C2 PF13561.6 gi|389847906|ref|YP_006350145.1| - 4.4e-42 144.2 0.5 9.1e-42 143.2 0.5 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389847906|ref|YP_006350145.1| - 2.4e-37 128.3 0.0 2.9e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|389847906|ref|YP_006350145.1| - 5.3e-07 29.4 0.1 6.2e-07 29.1 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|389847906|ref|YP_006350145.1| - 5.4e-06 26.4 0.2 3.8e-05 23.7 0.2 2.0 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 gi|389847906|ref|YP_006350145.1| - 0.00041 19.5 0.0 0.00058 19.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|389847906|ref|YP_006350145.1| - 0.00066 19.6 0.6 0.0013 18.6 0.4 1.5 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|389847906|ref|YP_006350145.1| - 0.0055 16.3 0.2 0.011 15.3 0.2 1.5 1 0 0 1 1 1 1 NmrA-like family ACT PF01842.25 gi|389847906|ref|YP_006350145.1| - 0.0079 16.0 0.1 0.02 14.7 0.1 1.6 1 0 0 1 1 1 1 ACT domain 3Beta_HSD PF01073.19 gi|389847906|ref|YP_006350145.1| - 0.0096 15.0 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|389847906|ref|YP_006350145.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase CdiI_4 PF18624.1 gi|389847906|ref|YP_006350145.1| - 0.021 15.3 0.2 0.036 14.5 0.2 1.3 1 0 0 1 1 1 0 CDI immunity protein ADH_zinc_N_2 PF13602.6 gi|662859551|ref|YP_006350144.2| - 1.7e-20 74.4 0.2 3.7e-20 73.3 0.2 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|662859551|ref|YP_006350144.2| - 8.9e-18 64.5 0.2 1.8e-17 63.5 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|662859551|ref|YP_006350144.2| - 7.9e-12 45.0 0.1 3.7e-11 42.9 0.1 2.0 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|662859551|ref|YP_006350144.2| - 0.011 15.2 0.7 0.018 14.5 0.7 1.5 1 1 0 1 1 1 0 short chain dehydrogenase IceA2 PF05862.11 gi|389847904|ref|YP_006350143.1| - 0.097 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Helicobacter pylori IceA2 protein ATP-grasp_2 PF08442.10 gi|389847903|ref|YP_006350142.1| - 1.2e-68 230.7 0.9 2e-68 229.9 0.9 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|389847903|ref|YP_006350142.1| - 5e-19 68.6 7.4 6.2e-18 65.1 4.9 2.7 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|389847903|ref|YP_006350142.1| - 9.7e-14 51.4 0.5 2.7e-13 50.0 0.5 1.7 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|389847903|ref|YP_006350142.1| - 9.5e-12 44.9 3.5 3.4e-09 36.5 1.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|389847903|ref|YP_006350142.1| - 3e-08 33.4 0.2 5.6e-08 32.5 0.2 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|389847903|ref|YP_006350142.1| - 2.7e-07 30.5 2.6 3.2e-07 30.3 0.4 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|389847903|ref|YP_006350142.1| - 0.049 13.2 0.0 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain CoA_binding PF02629.19 gi|389847902|ref|YP_006350141.1| - 1e-25 90.2 2.9 1.4e-25 89.8 1.3 2.1 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|389847902|ref|YP_006350141.1| - 3e-13 49.8 0.7 5.9e-13 48.9 0.7 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|389847902|ref|YP_006350141.1| - 5e-11 42.6 0.0 7.7e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|389847902|ref|YP_006350141.1| - 7.8e-07 29.6 0.1 2.2e-05 24.9 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain MCPsignal PF00015.21 gi|389847901|ref|YP_006350140.1| - 7.3e-44 149.6 48.6 9e-42 142.8 23.7 4.4 2 1 1 4 4 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|389847901|ref|YP_006350140.1| - 3e-12 46.7 18.1 1.3e-07 31.9 0.3 5.6 5 0 0 5 5 5 2 HAMP domain DUF948 PF06103.11 gi|389847901|ref|YP_006350140.1| - 2e-09 37.6 35.0 0.0067 16.7 2.6 6.8 3 2 3 6 6 6 5 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|389847901|ref|YP_006350140.1| - 8.6e-05 22.8 30.6 0.02 15.2 2.1 5.6 2 2 3 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|389847901|ref|YP_006350140.1| - 0.00064 19.8 27.9 0.3 11.1 3.2 4.9 2 2 3 5 5 5 2 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|389847901|ref|YP_006350140.1| - 0.0056 15.4 26.2 0.053 12.2 0.9 2.9 1 1 2 3 3 3 2 AAA domain KxDL PF10241.9 gi|389847901|ref|YP_006350140.1| - 0.0068 16.7 8.6 0.24 11.7 0.5 4.2 2 2 1 4 4 4 1 Uncharacterized conserved protein Spc7 PF08317.11 gi|389847901|ref|YP_006350140.1| - 0.024 13.5 27.0 0.034 13.0 8.8 2.6 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF4201 PF13870.6 gi|389847901|ref|YP_006350140.1| - 0.038 13.7 2.3 1.4 8.7 0.1 2.7 2 2 0 2 2 2 0 Domain of unknown function (DUF4201) Spectrin PF00435.21 gi|389847901|ref|YP_006350140.1| - 0.039 14.5 20.6 0.42 11.1 0.7 5.5 3 1 3 6 6 6 0 Spectrin repeat IFT57 PF10498.9 gi|389847901|ref|YP_006350140.1| - 0.074 12.0 19.0 0.1 11.6 1.0 3.2 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 Arfaptin PF06456.13 gi|389847901|ref|YP_006350140.1| - 0.13 11.9 9.8 1 8.8 1.6 3.4 2 2 2 4 4 4 0 Arfaptin-like domain COG2 PF06148.11 gi|389847901|ref|YP_006350140.1| - 0.14 12.2 22.0 0.62 10.1 2.6 4.9 3 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 HMMR_N PF15905.5 gi|389847901|ref|YP_006350140.1| - 0.23 10.9 17.8 3.3 7.1 1.1 3.2 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor N-terminal RPW8 PF05659.11 gi|389847901|ref|YP_006350140.1| - 0.24 11.1 4.3 27 4.4 0.2 4.2 3 1 1 5 5 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Baculo_PEP_C PF04513.12 gi|389847901|ref|YP_006350140.1| - 0.37 10.8 28.4 0.56 10.3 1.6 4.6 2 1 2 4 4 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DCB PF16213.5 gi|389847901|ref|YP_006350140.1| - 0.44 10.2 6.7 12 5.6 0.1 3.8 3 1 1 4 4 4 0 Dimerisation and cyclophilin-binding domain of Mon2 DASH_Dam1 PF08653.10 gi|389847901|ref|YP_006350140.1| - 0.44 10.4 5.6 42 4.0 0.2 4.4 4 0 0 4 4 4 0 DASH complex subunit Dam1 Fib_alpha PF08702.10 gi|389847901|ref|YP_006350140.1| - 0.47 10.6 18.7 19 5.4 0.0 4.2 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family ISG65-75 PF11727.8 gi|389847901|ref|YP_006350140.1| - 0.48 9.6 22.3 0.74 9.0 2.2 3.2 1 1 2 3 3 3 0 Invariant surface glycoprotein Atg14 PF10186.9 gi|389847901|ref|YP_006350140.1| - 0.57 9.2 11.2 2.1 7.4 4.5 2.4 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 SidC_N PF18219.1 gi|389847901|ref|YP_006350140.1| - 0.57 9.1 6.4 0.14 11.1 0.1 2.5 2 1 1 3 3 3 0 SidC N-terminal domain Laminin_II PF06009.12 gi|389847901|ref|YP_006350140.1| - 0.73 9.9 35.4 1.7 8.7 3.4 5.0 3 2 2 5 5 5 0 Laminin Domain II DUF724 PF05266.14 gi|389847901|ref|YP_006350140.1| - 0.8 9.5 16.6 0.24 11.2 1.2 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF724) DUF812 PF05667.11 gi|389847901|ref|YP_006350140.1| - 0.82 8.5 25.3 4.4 6.1 1.7 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF812) NPV_P10 PF05531.12 gi|389847901|ref|YP_006350140.1| - 1 9.8 27.8 9.3 6.8 2.8 5.5 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Nbl1_Borealin_N PF10444.9 gi|389847901|ref|YP_006350140.1| - 1.5 8.5 3.8 0.8 9.4 0.4 2.3 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal DUF2203 PF09969.9 gi|389847901|ref|YP_006350140.1| - 1.7 9.4 24.6 15 6.3 0.3 4.9 1 1 4 5 5 5 0 Uncharacterized conserved protein (DUF2203) Mod_r PF07200.13 gi|389847901|ref|YP_006350140.1| - 1.9 8.6 18.6 1.5 8.9 0.8 4.1 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Prominin PF05478.11 gi|389847901|ref|YP_006350140.1| - 2.2 6.2 14.1 0.75 7.7 10.1 2.0 1 1 1 2 2 2 0 Prominin Syntaxin_2 PF14523.6 gi|389847901|ref|YP_006350140.1| - 2.2 8.7 17.2 0.8 10.1 0.3 5.2 1 1 4 5 5 5 0 Syntaxin-like protein CorA PF01544.18 gi|389847901|ref|YP_006350140.1| - 2.5 7.3 19.9 0.4 10.0 7.1 3.0 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein MAD PF05557.13 gi|389847901|ref|YP_006350140.1| - 3.6 5.8 22.9 3.9 5.7 7.0 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein Sec34 PF04136.15 gi|389847901|ref|YP_006350140.1| - 5.4 6.9 16.8 8.5 6.2 0.7 4.5 2 2 2 4 4 4 0 Sec34-like family CBS PF00571.28 gi|389847900|ref|YP_006350139.1| - 6.3e-22 77.8 2.3 9.7e-11 42.0 0.4 2.1 2 0 0 2 2 2 2 CBS domain DUF2062 PF09835.9 gi|389847899|ref|YP_006350138.1| - 1.3e-19 70.5 7.7 1.7e-19 70.1 7.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) Glycos_transf_3 PF00591.21 gi|389847898|ref|YP_006350137.1| - 2.8e-101 338.4 2.6 2.8e-101 338.4 2.6 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|389847898|ref|YP_006350137.1| - 3.3e-18 65.3 2.4 8e-18 64.0 2.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|389847898|ref|YP_006350137.1| - 0.0057 16.3 0.1 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2717) PRAI PF00697.22 gi|389847897|ref|YP_006350136.1| - 3.2e-39 134.7 0.0 3.7e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.15 gi|389847897|ref|YP_006350136.1| - 6.7e-07 29.0 1.7 6.7e-07 29.0 1.7 1.7 1 1 1 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.17 gi|389847897|ref|YP_006350136.1| - 0.0069 15.7 1.8 0.011 15.1 0.1 2.1 2 1 0 2 2 2 1 Thiamine monophosphate synthase DeoC PF01791.9 gi|389847897|ref|YP_006350136.1| - 0.0074 15.9 2.3 0.063 12.9 2.3 2.2 1 1 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.21 gi|389847897|ref|YP_006350136.1| - 0.0084 15.6 0.6 0.027 13.9 0.0 2.0 2 1 0 2 2 2 1 Histidine biosynthesis protein UPF0180 PF03698.13 gi|389847897|ref|YP_006350136.1| - 0.043 14.0 0.0 0.086 13.0 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) BtpA PF03437.15 gi|389847897|ref|YP_006350136.1| - 0.084 12.3 0.7 0.15 11.5 0.1 1.7 2 0 0 2 2 2 0 BtpA family Chorismate_bind PF00425.18 gi|389847896|ref|YP_006350135.1| - 3.4e-93 311.9 0.0 1.6e-90 303.1 0.0 2.7 3 0 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|389847896|ref|YP_006350135.1| - 1.7e-18 67.2 0.0 1.2e-15 58.0 0.0 3.4 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|389847894|ref|YP_006350133.1| - 1.9e-43 148.5 0.0 2.2e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|389847894|ref|YP_006350133.1| - 4.3e-07 29.9 0.0 5.9e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 Ribonuc_red_lgC PF02867.15 gi|389847893|ref|YP_006350132.1| - 1.1e-150 502.6 0.0 1.4e-150 502.3 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|389847893|ref|YP_006350132.1| - 8.4e-23 80.2 0.0 2.7e-22 78.6 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain PADR1 PF08063.12 gi|389847893|ref|YP_006350132.1| - 0.0029 17.4 4.1 0.0053 16.5 4.1 1.5 1 0 0 1 1 1 1 PADR1 (NUC008) domain TSCPD PF12637.7 gi|389847893|ref|YP_006350132.1| - 0.077 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 TSCPD domain TraG-D_C PF12696.7 gi|389847893|ref|YP_006350132.1| - 0.15 12.0 0.0 0.58 10.1 0.0 1.9 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG zf-RRN7 PF11781.8 gi|389847893|ref|YP_006350132.1| - 0.59 9.9 5.4 1.3 8.8 5.4 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PGF-CTERM PF18204.1 gi|662859550|ref|YP_006350131.2| - 8.4e-07 28.8 8.0 1.6e-06 27.9 8.0 1.5 1 0 0 1 1 1 1 PGF-CTERM motif MG2 PF01835.19 gi|662859550|ref|YP_006350131.2| - 0.086 13.3 7.2 0.42 11.1 0.0 4.9 4 2 1 5 5 5 0 MG2 domain Pilin_N PF07790.11 gi|389847891|ref|YP_006350130.1| - 3.4e-23 82.3 3.5 3.4e-23 82.3 3.5 1.9 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|389847890|ref|YP_006350129.1| - 1e-25 90.4 4.5 1.2e-25 90.3 2.4 1.9 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|389847889|ref|YP_006350128.1| - 3.3e-25 88.8 1.7 3.3e-25 88.8 1.7 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal GNAT_like PF18407.1 gi|389847889|ref|YP_006350128.1| - 1.2 9.5 4.6 0.73 10.2 0.9 2.2 2 1 0 2 2 2 0 GCN5-related N-acetyltransferase like domain PsaM PF07465.13 gi|389847888|ref|YP_006350127.1| - 0.0029 17.3 0.5 0.0062 16.2 0.5 1.5 1 0 0 1 1 1 1 Photosystem I protein M (PsaM) DUF1684 PF07920.11 gi|389847887|ref|YP_006350126.1| - 6.6e-54 182.0 0.2 9.4e-54 181.5 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) DM13 PF10517.9 gi|389847887|ref|YP_006350126.1| - 0.062 13.9 0.1 9 6.9 0.0 2.2 1 1 1 2 2 2 0 Electron transfer DM13 Aldo_ket_red PF00248.21 gi|389847886|ref|YP_006350125.1| - 3.7e-73 246.3 0.0 4.2e-73 246.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family EamA PF00892.20 gi|389847884|ref|YP_006350123.1| - 5.1e-35 120.6 30.6 2e-18 66.9 11.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family ABC_tran PF00005.27 gi|389847883|ref|YP_006350122.1| - 3.5e-31 108.5 0.0 5.5e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389847883|ref|YP_006350122.1| - 1.1e-18 67.5 0.1 1.1e-18 67.5 0.1 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389847883|ref|YP_006350122.1| - 2.2e-05 24.4 0.2 0.019 14.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389847883|ref|YP_006350122.1| - 0.0011 19.3 0.1 0.17 12.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|389847883|ref|YP_006350122.1| - 0.029 13.8 0.1 0.19 11.1 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389847883|ref|YP_006350122.1| - 0.072 13.5 3.6 0.054 13.9 1.4 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|389847883|ref|YP_006350122.1| - 0.081 12.9 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|389847883|ref|YP_006350122.1| - 0.09 12.3 0.5 17 4.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain AIG1 PF04548.16 gi|389847883|ref|YP_006350122.1| - 0.14 11.5 0.1 0.25 10.6 0.1 1.4 1 0 0 1 1 1 0 AIG1 family AAA_29 PF13555.6 gi|389847883|ref|YP_006350122.1| - 0.25 11.1 0.2 0.49 10.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|389847882|ref|YP_006350121.1| - 7.4e-25 88.1 0.0 1.3e-24 87.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389847882|ref|YP_006350121.1| - 2.7e-19 69.4 0.0 4.9e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389847882|ref|YP_006350121.1| - 1.8e-08 34.6 2.0 6.9e-07 29.4 0.0 3.0 1 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389847882|ref|YP_006350121.1| - 0.00084 19.6 0.9 0.23 11.7 0.9 2.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389847882|ref|YP_006350121.1| - 0.037 13.5 0.1 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389847882|ref|YP_006350121.1| - 0.078 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|389847881|ref|YP_006350120.1| - 2e-32 112.4 10.0 2e-32 112.4 10.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389847881|ref|YP_006350120.1| - 8e-09 35.4 0.2 8e-09 35.4 0.2 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|389847880|ref|YP_006350119.1| - 2.3e-39 135.0 12.9 2.3e-39 135.0 12.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|389847879|ref|YP_006350118.1| - 2.7e-60 204.3 0.9 4.3e-60 203.7 0.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389847879|ref|YP_006350118.1| - 2.1e-06 27.3 0.9 5.2e-06 26.1 0.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RVT_3 PF13456.6 gi|389847878|ref|YP_006350117.1| - 0.001 18.9 0.1 0.0022 17.8 0.0 1.6 2 0 0 2 2 2 1 Reverse transcriptase-like RNase_H PF00075.24 gi|389847878|ref|YP_006350117.1| - 0.022 14.9 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 RNase H PTA_PTB PF01515.19 gi|389847877|ref|YP_006350116.1| - 1.5e-94 316.9 0.0 2e-94 316.5 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|389847877|ref|YP_006350116.1| - 1.6e-30 106.3 0.2 2.6e-28 99.0 0.2 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|389847877|ref|YP_006350116.1| - 3.2e-21 75.8 1.0 8.6e-21 74.4 1.0 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain HTH_31 PF13560.6 gi|389847877|ref|YP_006350116.1| - 0.095 13.1 2.6 0.18 12.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain NIF3 PF01784.18 gi|389847877|ref|YP_006350116.1| - 0.15 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Peptidase_M24 PF00557.24 gi|389847876|ref|YP_006350115.1| - 2.2e-10 40.6 1.7 4.7e-10 39.5 1.7 1.6 1 1 0 1 1 1 1 Metallopeptidase family M24 TRAM_2 PF18693.1 gi|389847876|ref|YP_006350115.1| - 0.075 13.2 0.0 0.22 11.7 0.0 1.9 1 0 0 1 1 1 0 TRAM domain COX15-CtaA PF02628.15 gi|662859549|ref|YP_006350114.2| - 8.1e-10 38.3 33.6 1.7e-09 37.2 11.5 3.5 1 1 3 4 4 4 3 Cytochrome oxidase assembly protein SBP_bac_3 PF00497.20 gi|389847874|ref|YP_006350113.1| - 7.8e-66 221.7 0.5 9e-66 221.5 0.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|389847874|ref|YP_006350113.1| - 1.6e-07 31.5 0.0 2.7e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|389847874|ref|YP_006350113.1| - 0.00016 21.7 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like DUF5067 PF16729.5 gi|389847874|ref|YP_006350113.1| - 0.023 14.6 0.0 0.055 13.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5067) BPD_transp_1 PF00528.22 gi|389847873|ref|YP_006350112.1| - 1.5e-19 70.4 7.1 1.5e-19 70.4 7.1 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CPP1-like PF11833.8 gi|389847873|ref|YP_006350112.1| - 0.065 12.9 1.7 0.13 11.9 1.4 1.7 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like ABC_tran PF00005.27 gi|389847872|ref|YP_006350111.1| - 4.1e-36 124.5 0.0 5.2e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847872|ref|YP_006350111.1| - 1.9e-10 41.1 0.0 0.00038 20.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389847872|ref|YP_006350111.1| - 1.6e-09 37.5 0.1 2.4e-08 33.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389847872|ref|YP_006350111.1| - 3.4e-05 23.5 0.0 6.5e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389847872|ref|YP_006350111.1| - 0.00013 22.4 0.1 0.0002 21.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|389847872|ref|YP_006350111.1| - 0.00017 21.3 0.0 0.00031 20.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389847872|ref|YP_006350111.1| - 0.00046 20.5 0.1 0.0014 18.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389847872|ref|YP_006350111.1| - 0.00079 19.4 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|389847872|ref|YP_006350111.1| - 0.0019 17.1 0.1 1.8 7.3 0.0 2.6 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|389847872|ref|YP_006350111.1| - 0.0025 18.3 0.0 0.0043 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|389847872|ref|YP_006350111.1| - 0.0053 16.7 0.0 0.037 13.9 0.0 2.0 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|389847872|ref|YP_006350111.1| - 0.012 15.2 0.1 0.038 13.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|389847872|ref|YP_006350111.1| - 0.026 14.3 0.0 0.045 13.5 0.0 1.4 1 1 1 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|389847872|ref|YP_006350111.1| - 0.028 14.4 0.0 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|389847872|ref|YP_006350111.1| - 0.03 14.7 0.1 0.48 10.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|389847872|ref|YP_006350111.1| - 0.041 14.0 0.0 0.072 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|389847872|ref|YP_006350111.1| - 0.052 13.3 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|389847872|ref|YP_006350111.1| - 0.066 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389847872|ref|YP_006350111.1| - 0.066 12.4 0.0 0.68 9.1 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Adeno_IVa2 PF02456.15 gi|389847872|ref|YP_006350111.1| - 0.085 11.6 0.0 0.31 9.8 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|389847872|ref|YP_006350111.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain TK PF00265.18 gi|389847872|ref|YP_006350111.1| - 0.11 12.3 0.0 3.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Thymidine kinase DUF3987 PF13148.6 gi|389847872|ref|YP_006350111.1| - 0.13 11.2 0.1 0.25 10.3 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_27 PF13514.6 gi|389847872|ref|YP_006350111.1| - 0.15 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|389847872|ref|YP_006350111.1| - 0.18 12.1 0.2 2.5 8.4 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PEPCK_ATP PF01293.20 gi|389847872|ref|YP_006350111.1| - 0.19 10.3 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase HypA PF01155.19 gi|389847871|ref|YP_006350110.1| - 0.013 15.5 0.1 0.016 15.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|389847871|ref|YP_006350110.1| - 0.016 15.2 0.8 0.03 14.4 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|389847871|ref|YP_006350110.1| - 0.018 15.1 2.2 0.037 14.2 2.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|389847871|ref|YP_006350110.1| - 0.029 14.3 5.7 0.062 13.2 5.7 1.5 1 1 0 1 1 1 0 Nudix N-terminal PHD PF00628.29 gi|389847871|ref|YP_006350110.1| - 0.032 14.1 1.6 0.11 12.3 1.7 1.8 1 1 0 1 1 1 0 PHD-finger Mut7-C PF01927.16 gi|389847871|ref|YP_006350110.1| - 0.033 14.3 0.8 0.095 12.8 0.8 1.7 1 1 0 1 1 1 0 Mut7-C RNAse domain C1_1 PF00130.22 gi|389847871|ref|YP_006350110.1| - 0.034 14.0 0.0 1.1 9.3 0.0 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 gi|389847871|ref|YP_006350110.1| - 0.068 12.8 0.4 4 7.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S27e PF01667.17 gi|389847871|ref|YP_006350110.1| - 0.093 12.4 0.5 13 5.6 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|389847871|ref|YP_006350110.1| - 0.1 12.3 1.1 2 8.2 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|389847871|ref|YP_006350110.1| - 0.11 12.7 1.5 6.8 6.9 2.5 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_6 PF14599.6 gi|389847871|ref|YP_006350110.1| - 0.11 12.6 1.2 8.5 6.5 0.4 2.2 1 1 1 2 2 2 0 Zinc-ribbon RNA_POL_M_15KD PF02150.16 gi|389847871|ref|YP_006350110.1| - 0.15 11.9 1.2 14 5.6 0.2 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|389847871|ref|YP_006350110.1| - 0.25 11.3 1.3 1.4 8.9 1.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|389847871|ref|YP_006350110.1| - 0.27 11.4 1.4 1.7 8.9 1.4 1.9 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like AAA PF00004.29 gi|389847870|ref|YP_006350109.1| - 1.1e-10 42.0 0.0 5.3e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|389847870|ref|YP_006350109.1| - 8.1e-06 25.7 0.0 1.6e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|389847870|ref|YP_006350109.1| - 0.00036 20.8 0.5 0.0011 19.3 0.2 2.1 2 0 0 2 2 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|389847870|ref|YP_006350109.1| - 0.00049 19.9 0.0 0.00082 19.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|389847870|ref|YP_006350109.1| - 0.0012 19.1 0.0 0.29 11.4 0.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389847870|ref|YP_006350109.1| - 0.0021 18.5 0.0 0.0083 16.5 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|389847870|ref|YP_006350109.1| - 0.005 17.1 0.0 0.014 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|389847870|ref|YP_006350109.1| - 0.007 16.1 0.9 0.027 14.2 0.9 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|389847870|ref|YP_006350109.1| - 0.015 14.9 0.0 0.5 9.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|389847870|ref|YP_006350109.1| - 0.016 15.6 0.0 0.054 13.9 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Rad17 PF03215.15 gi|389847870|ref|YP_006350109.1| - 0.021 14.8 0.0 0.18 11.7 0.0 2.0 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|389847870|ref|YP_006350109.1| - 0.025 15.1 0.2 2.8 8.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|389847870|ref|YP_006350109.1| - 0.028 14.6 0.2 0.31 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|389847870|ref|YP_006350109.1| - 0.04 13.7 0.0 0.53 10.1 0.0 2.6 3 0 0 3 3 3 0 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|389847870|ref|YP_006350109.1| - 0.041 13.1 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|389847870|ref|YP_006350109.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|389847870|ref|YP_006350109.1| - 0.069 13.1 0.0 0.33 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|389847870|ref|YP_006350109.1| - 0.079 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389847870|ref|YP_006350109.1| - 0.08 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|389847870|ref|YP_006350109.1| - 0.088 12.8 0.0 0.32 11.0 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PT-TG PF14449.6 gi|389847870|ref|YP_006350109.1| - 0.16 11.9 0.6 0.4 10.6 0.1 1.9 2 0 0 2 2 2 0 Pre-toxin TG HTH_20 PF12840.7 gi|389847869|ref|YP_006350108.1| - 1.1e-11 44.6 0.4 2.3e-11 43.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389847869|ref|YP_006350108.1| - 7.3e-08 32.2 0.5 5.2e-07 29.4 0.5 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|389847869|ref|YP_006350108.1| - 5.7e-06 26.2 2.2 2.7e-05 24.0 0.6 2.3 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Nop16 PF09420.10 gi|389847869|ref|YP_006350108.1| - 0.0028 17.7 0.5 0.0037 17.3 0.5 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein Nop16 FUR PF01475.19 gi|389847869|ref|YP_006350108.1| - 0.015 15.4 0.3 0.024 14.8 0.3 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.14 gi|389847869|ref|YP_006350108.1| - 0.023 14.6 0.1 0.047 13.7 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1804 PF08822.11 gi|389847869|ref|YP_006350108.1| - 0.028 14.4 0.0 0.12 12.4 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1804) TFIIE_alpha PF02002.17 gi|389847869|ref|YP_006350108.1| - 0.032 14.1 0.4 0.076 12.9 0.2 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit Penicillinase_R PF03965.16 gi|389847869|ref|YP_006350108.1| - 0.044 14.1 0.4 0.18 12.2 0.1 2.0 1 1 0 2 2 2 0 Penicillinase repressor Histone_HNS PF00816.21 gi|389847869|ref|YP_006350108.1| - 0.048 14.5 1.3 4.6 8.1 0.1 2.2 2 0 0 2 2 2 0 H-NS histone family HisKA_2 PF07568.12 gi|389847869|ref|YP_006350108.1| - 0.08 13.0 0.6 0.42 10.7 0.2 2.1 2 0 0 2 2 2 0 Histidine kinase Inhibitor_I9 PF05922.16 gi|389847869|ref|YP_006350108.1| - 0.1 13.3 0.1 0.19 12.4 0.1 1.5 1 1 0 1 1 1 0 Peptidase inhibitor I9 SBP_bac_3 PF00497.20 gi|389847869|ref|YP_006350108.1| - 0.11 11.9 0.1 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 HTH_38 PF13936.6 gi|389847869|ref|YP_006350108.1| - 0.94 9.3 3.8 13 5.6 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain Apolipoprotein PF01442.18 gi|389847869|ref|YP_006350108.1| - 2.3 8.1 8.4 12 5.7 8.4 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain E1-E2_ATPase PF00122.20 gi|389847868|ref|YP_006350107.1| - 1.8e-51 174.2 0.6 7.7e-51 172.2 0.2 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|389847868|ref|YP_006350107.1| - 5.4e-41 141.2 7.3 5.4e-41 141.2 7.3 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|389847868|ref|YP_006350107.1| - 5.9e-10 39.4 1.3 1.6e-09 38.1 0.0 2.4 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|389847868|ref|YP_006350107.1| - 2.1e-05 24.4 0.3 8.7e-05 22.4 0.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389847868|ref|YP_006350107.1| - 0.039 14.3 0.1 0.16 12.4 0.1 2.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase ProQ_C PF17516.2 gi|389847868|ref|YP_006350107.1| - 0.049 13.1 0.1 0.12 11.8 0.1 1.6 1 0 0 1 1 1 0 ProQ C-terminal domain DUF2721 PF11026.8 gi|389847868|ref|YP_006350107.1| - 0.33 10.8 0.0 0.33 10.8 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2721) HTH_Crp_2 PF13545.6 gi|389847867|ref|YP_006350106.1| - 4.3e-06 26.6 0.2 1.1e-05 25.3 0.2 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|389847867|ref|YP_006350106.1| - 4.9e-06 26.3 0.0 1.1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|389847867|ref|YP_006350106.1| - 9.5e-06 25.7 0.5 1.7e-05 24.9 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389847867|ref|YP_006350106.1| - 3.2e-05 23.7 0.2 7.9e-05 22.5 0.2 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389847867|ref|YP_006350106.1| - 5.9e-05 22.9 0.0 0.00015 21.6 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|389847867|ref|YP_006350106.1| - 0.00018 21.2 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389847867|ref|YP_006350106.1| - 0.00019 21.3 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|389847867|ref|YP_006350106.1| - 0.0006 19.5 0.8 0.0013 18.5 0.8 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DUF1724 PF08350.10 gi|389847867|ref|YP_006350106.1| - 0.00072 19.6 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_24 PF13412.6 gi|389847867|ref|YP_006350106.1| - 0.0014 18.1 0.1 0.0028 17.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|389847867|ref|YP_006350106.1| - 0.0029 18.0 0.0 0.0063 16.9 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_45 PF14947.6 gi|389847867|ref|YP_006350106.1| - 0.0095 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix Topoisom_bac PF01131.20 gi|389847867|ref|YP_006350106.1| - 0.069 12.1 0.0 0.099 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase HTH_11 PF08279.12 gi|389847867|ref|YP_006350106.1| - 0.07 13.1 0.3 0.19 11.7 0.1 1.8 2 0 0 2 2 2 0 HTH domain HTH_29 PF13551.6 gi|389847867|ref|YP_006350106.1| - 0.071 13.1 0.2 0.15 12.1 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 gi|389847867|ref|YP_006350106.1| - 0.074 13.1 0.4 0.2 11.7 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|389847867|ref|YP_006350106.1| - 0.12 12.5 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase adh_short_C2 PF13561.6 gi|389847866|ref|YP_006350105.1| - 1.3e-55 188.5 1.3 1.6e-55 188.2 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389847866|ref|YP_006350105.1| - 2.4e-46 157.7 1.1 2.9e-46 157.4 1.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389847866|ref|YP_006350105.1| - 1.5e-11 44.6 0.4 1.9e-11 44.2 0.4 1.1 1 0 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|389847866|ref|YP_006350105.1| - 7.8e-05 22.2 0.3 0.00043 19.8 0.1 2.0 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|389847866|ref|YP_006350105.1| - 0.00011 21.8 0.8 0.001 18.6 0.8 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389847866|ref|YP_006350105.1| - 0.0012 17.9 0.4 0.0021 17.1 0.3 1.4 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family 2-Hacid_dh_C PF02826.19 gi|389847866|ref|YP_006350105.1| - 0.023 14.1 0.0 0.14 11.5 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.15 gi|389847866|ref|YP_006350105.1| - 0.062 13.1 3.5 1.2 8.9 3.0 2.7 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Polysacc_synt_2 PF02719.15 gi|389847866|ref|YP_006350105.1| - 0.079 12.1 0.1 0.089 11.9 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein ThiF PF00899.21 gi|389847866|ref|YP_006350105.1| - 0.44 9.9 5.3 4.9 6.4 0.6 2.4 1 1 1 2 2 2 0 ThiF family LtrA PF06772.11 gi|389847865|ref|YP_006350104.1| - 2.4e-93 313.2 38.0 2.7e-93 313.0 38.0 1.0 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) DUF4781 PF16013.5 gi|389847865|ref|YP_006350104.1| - 0.2 10.4 0.4 0.37 9.6 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) EXS PF03124.14 gi|389847865|ref|YP_006350104.1| - 1.1 8.5 11.0 0.7 9.2 2.9 2.6 2 1 0 2 2 2 0 EXS family Acetyltransf_3 PF13302.7 gi|662859548|ref|YP_006350103.2| - 3.1e-13 50.6 0.1 4.2e-13 50.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389847863|ref|YP_006350102.1| - 1.2e-18 68.1 0.1 1.7e-18 67.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389847863|ref|YP_006350102.1| - 1.5e-06 28.4 0.0 2.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF1965 PF09248.10 gi|389847862|ref|YP_006350101.1| - 0.071 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) RseC_MucC PF04246.12 gi|389847862|ref|YP_006350101.1| - 0.16 11.9 7.2 0.37 10.7 3.5 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF5518 PF17647.1 gi|389847862|ref|YP_006350101.1| - 8.3 6.6 32.4 1.9 8.7 20.1 2.4 1 1 1 2 2 2 0 Family of unknown function (DUF5518) Acetyltransf_1 PF00583.25 gi|389847861|ref|YP_006350100.1| - 2.1e-15 57.0 0.0 2.8e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389847861|ref|YP_006350100.1| - 1.4e-09 37.9 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389847861|ref|YP_006350100.1| - 1.9e-08 34.6 0.0 3.2e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389847861|ref|YP_006350100.1| - 5.5e-07 30.3 0.0 8.4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|389847861|ref|YP_006350100.1| - 7.6e-06 25.7 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389847861|ref|YP_006350100.1| - 2.6e-05 24.3 0.0 5.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|389847861|ref|YP_006350100.1| - 0.00013 22.0 0.2 0.00052 20.1 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847861|ref|YP_006350100.1| - 0.0048 16.8 0.0 0.0077 16.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein YdjM PF04307.14 gi|389847860|ref|YP_006350099.1| - 7.1e-12 45.0 4.5 9.2e-12 44.6 4.5 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase HTH_31 PF13560.6 gi|389847859|ref|YP_006350098.1| - 3.8e-09 36.8 0.1 1.3e-08 35.1 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|389847859|ref|YP_006350098.1| - 2.1e-08 34.1 0.0 5.2e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|389847859|ref|YP_006350098.1| - 1.7e-05 24.7 0.0 3.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|389847859|ref|YP_006350098.1| - 0.013 15.9 0.0 0.066 13.7 0.0 2.1 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain YdaS_antitoxin PF15943.5 gi|389847859|ref|YP_006350098.1| - 0.016 15.0 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_11 PF08279.12 gi|389847859|ref|YP_006350098.1| - 0.047 13.6 0.1 0.45 10.5 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|389847859|ref|YP_006350098.1| - 0.078 12.6 0.0 0.24 11.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HMG_CoA_synt_N PF01154.17 gi|389847857|ref|YP_006350096.1| - 1.9e-27 96.3 0.0 2.8e-27 95.7 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|389847857|ref|YP_006350096.1| - 7.8e-22 78.2 0.0 1.5e-21 77.2 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal TPR_10 PF13374.6 gi|389847857|ref|YP_006350096.1| - 0.31 11.0 2.1 0.98 9.4 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Big_1 PF02369.16 gi|389847856|ref|YP_006350095.1| - 1.2e-07 31.7 4.1 1.2e-07 31.7 4.1 6.5 5 2 1 6 6 6 2 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|389847856|ref|YP_006350095.1| - 2e-07 31.2 1.0 2e-07 31.2 1.0 5.4 6 0 0 6 6 6 4 Invasin, domain 3 Alpha-amylase_C PF02806.18 gi|389847856|ref|YP_006350095.1| - 0.0073 16.8 0.1 0.031 14.7 0.1 2.2 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Glyco_hydro2_C5 PF18565.1 gi|389847856|ref|YP_006350095.1| - 2 8.3 6.1 11 5.9 1.4 3.7 3 1 0 3 3 3 0 Glycoside hydrolase family 2 C-terminal domain 5 Pilin_N PF07790.11 gi|389847856|ref|YP_006350095.1| - 8.1 7.4 9.4 1.2 10.1 0.1 4.2 4 2 1 5 5 5 0 Archaeal Type IV pilin, N-terminal DUF2150 PF09920.9 gi|389847855|ref|YP_006350094.1| - 2.9e-63 213.3 8.7 3.3e-63 213.1 8.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) TatD_DNase PF01026.21 gi|389847854|ref|YP_006350093.1| - 1.1e-17 64.2 0.0 2.1e-16 60.1 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase NYN PF01936.18 gi|389847853|ref|YP_006350092.1| - 4.2e-18 66.2 0.1 5.1e-18 66.0 0.1 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.6 gi|389847853|ref|YP_006350092.1| - 0.0014 18.2 0.0 0.0019 17.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Hydrolase_like PF13242.6 gi|389847853|ref|YP_006350092.1| - 0.011 15.7 0.3 0.023 14.8 0.2 1.6 1 1 0 1 1 1 0 HAD-hyrolase-like AP_endonuc_2 PF01261.24 gi|389847853|ref|YP_006350092.1| - 0.023 14.1 0.2 0.036 13.5 0.2 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_S8 PF00082.22 gi|389847852|ref|YP_006350091.1| - 5.7e-51 173.5 12.0 9.8e-51 172.8 12.0 1.3 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|389847852|ref|YP_006350091.1| - 0.7 9.8 15.7 0.031 14.1 4.6 3.5 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence GTP_EFTU PF00009.27 gi|389847850|ref|YP_006350089.1| - 7.2e-57 192.1 0.1 8.6e-57 191.8 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|389847850|ref|YP_006350089.1| - 5.7e-36 123.2 0.0 1.1e-35 122.3 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|389847850|ref|YP_006350089.1| - 1.2e-16 60.9 3.5 9.6e-16 57.9 1.7 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|389847850|ref|YP_006350089.1| - 1.5e-08 34.7 0.3 4.1e-07 30.1 0.3 2.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|389847850|ref|YP_006350089.1| - 0.00036 20.5 1.6 0.026 14.4 0.2 2.5 1 1 1 2 2 2 1 RsgA GTPase Ras PF00071.22 gi|389847850|ref|YP_006350089.1| - 0.00078 19.1 1.0 0.0034 17.0 0.3 2.1 2 1 0 2 2 2 1 Ras family Dynamin_N PF00350.23 gi|389847850|ref|YP_006350089.1| - 0.0026 17.8 0.1 0.91 9.6 0.0 2.6 1 1 1 2 2 2 2 Dynamin family GTP_EFTU_D4 PF14578.6 gi|389847850|ref|YP_006350089.1| - 0.0049 16.7 1.0 0.013 15.4 1.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Septin PF00735.18 gi|389847850|ref|YP_006350089.1| - 0.005 16.1 0.2 0.014 14.6 0.0 1.8 2 1 0 2 2 2 1 Septin Gtr1_RagA PF04670.12 gi|389847850|ref|YP_006350089.1| - 0.017 14.5 0.1 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region SRPRB PF09439.10 gi|389847850|ref|YP_006350089.1| - 0.019 14.4 0.1 0.63 9.5 0.1 2.3 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|389847850|ref|YP_006350089.1| - 0.02 14.5 0.4 0.46 10.0 0.3 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Roc PF08477.13 gi|389847850|ref|YP_006350089.1| - 0.032 14.5 0.0 3.4 7.9 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTP_transf_3 PF12804.7 gi|389847850|ref|YP_006350089.1| - 0.083 13.2 0.0 0.22 11.8 0.0 1.6 1 1 0 1 1 1 0 MobA-like NTP transferase domain tRNA-synt_2b PF00587.25 gi|389847849|ref|YP_006350088.1| - 1.1e-34 120.0 0.0 1.4e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|389847849|ref|YP_006350088.1| - 1.2e-08 35.0 0.0 2.2e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain PAS_9 PF13426.7 gi|389847848|ref|YP_006350087.1| - 2.4e-40 137.0 0.3 7.4e-19 67.9 0.1 3.5 3 0 0 3 3 3 3 PAS domain BAT PF15915.5 gi|389847848|ref|YP_006350087.1| - 4.2e-39 133.9 5.6 4.2e-39 133.9 5.6 2.2 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|389847848|ref|YP_006350087.1| - 2.7e-32 111.1 0.3 3.5e-13 49.6 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|389847848|ref|YP_006350087.1| - 2.2e-31 108.4 3.6 1.2e-12 48.1 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|389847848|ref|YP_006350087.1| - 9.4e-22 77.1 0.9 1.5e-12 47.6 0.1 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|389847848|ref|YP_006350087.1| - 1.3e-20 73.0 0.1 8.4e-06 25.7 0.0 3.6 3 0 0 3 3 3 3 PAS domain HTH_10 PF04967.12 gi|389847848|ref|YP_006350087.1| - 1.4e-18 66.4 0.0 3e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|389847848|ref|YP_006350087.1| - 2.3e-15 57.1 0.7 2e-14 54.1 0.2 2.6 3 0 0 3 3 3 1 GAF domain GAF PF01590.26 gi|389847848|ref|YP_006350087.1| - 3.1e-08 34.3 0.0 8.9e-08 32.8 0.0 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|389847848|ref|YP_006350087.1| - 1.3e-05 25.5 0.0 3e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|389847848|ref|YP_006350087.1| - 0.00014 22.0 1.2 0.59 10.3 0.0 4.3 3 2 0 3 3 3 1 PAS fold Sigma70_r4 PF04545.16 gi|389847848|ref|YP_006350087.1| - 0.0092 15.5 0.1 0.46 10.0 0.0 2.9 2 0 0 2 2 2 1 Sigma-70, region 4 PAS_10 PF13596.6 gi|389847848|ref|YP_006350087.1| - 0.011 16.3 0.0 3.9 8.1 0.0 3.1 2 0 0 2 2 2 0 PAS domain PAS_12 PF18095.1 gi|389847848|ref|YP_006350087.1| - 0.017 14.8 0.0 0.52 9.9 0.0 2.4 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain FAS_I_H PF18314.1 gi|389847848|ref|YP_006350087.1| - 0.1 12.2 0.9 0.35 10.5 0.2 2.2 2 0 0 2 2 2 0 Fatty acid synthase type I helical domain RNaseH_pPIWI_RE PF13032.6 gi|389847844|ref|YP_006350083.1| - 0.046 13.6 0.2 0.048 13.6 0.2 1.1 1 0 0 1 1 1 0 RNaseH domain of pPIWI_RE GCV_T PF01571.21 gi|389847843|ref|YP_006350082.1| - 6.1e-87 291.2 0.0 7.7e-87 290.9 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|389847843|ref|YP_006350082.1| - 2.9e-21 75.2 0.1 5.5e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|389847843|ref|YP_006350082.1| - 0.00024 21.3 0.1 0.32 11.1 0.0 2.2 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.9 gi|389847843|ref|YP_006350082.1| - 0.003 17.9 0.0 1.6 9.1 0.0 2.3 2 0 0 2 2 2 2 GTP-binding protein TrmE N-terminus GCV_H PF01597.19 gi|389847842|ref|YP_006350081.1| - 8.3e-45 151.6 0.0 9.1e-45 151.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|389847842|ref|YP_006350081.1| - 0.0011 18.8 0.1 0.018 14.9 0.1 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|389847842|ref|YP_006350081.1| - 0.026 14.5 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.16 gi|389847841|ref|YP_006350080.1| - 2.8e-101 339.5 0.0 3.3e-101 339.2 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|389847841|ref|YP_006350080.1| - 0.00068 18.3 0.0 0.00085 18.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|389847841|ref|YP_006350080.1| - 0.007 15.4 0.0 0.012 14.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Macscav_rec PF03523.13 gi|389847841|ref|YP_006350080.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Macrophage scavenger receptor Aminotran_5 PF00266.19 gi|389847840|ref|YP_006350079.1| - 5.4e-10 38.8 0.0 8.2e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|389847840|ref|YP_006350079.1| - 4.1e-06 25.9 0.0 2.8e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_1_2 PF00155.21 gi|389847840|ref|YP_006350079.1| - 0.01 15.1 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|389847840|ref|YP_006350079.1| - 0.014 14.7 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|389847840|ref|YP_006350079.1| - 0.2 10.2 0.0 0.28 9.6 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Zn_Tnp_IS1595 PF12760.7 gi|389847839|ref|YP_006350078.1| - 0.00079 19.4 0.3 0.001 19.0 0.3 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|389847839|ref|YP_006350078.1| - 0.0053 17.1 3.1 0.022 15.2 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain DUF3268 PF11672.8 gi|389847839|ref|YP_006350078.1| - 0.021 15.1 0.8 0.023 15.0 0.8 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-RRN7 PF11781.8 gi|389847839|ref|YP_006350078.1| - 0.022 14.4 2.3 0.029 14.1 0.2 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-NADH-PPase PF09297.11 gi|389847839|ref|YP_006350078.1| - 0.048 13.3 0.2 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-MIZ PF02891.20 gi|389847839|ref|YP_006350078.1| - 0.057 13.2 0.8 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zinc_ribbon_5 PF13719.6 gi|389847839|ref|YP_006350078.1| - 0.067 13.0 0.2 0.1 12.3 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|389847839|ref|YP_006350078.1| - 0.093 12.8 3.1 1 9.4 0.7 2.1 2 0 0 2 2 2 0 Rubredoxin DUF3797 PF12677.7 gi|389847839|ref|YP_006350078.1| - 0.15 11.9 2.6 1.4 8.9 0.7 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) RNA_POL_M_15KD PF02150.16 gi|389847839|ref|YP_006350078.1| - 0.16 11.9 2.3 2.1 8.3 2.3 2.2 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_ribbon_SprT PF17283.2 gi|389847839|ref|YP_006350078.1| - 0.33 10.9 4.0 0.93 9.5 0.8 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-RanBP PF00641.18 gi|389847839|ref|YP_006350078.1| - 1.4 8.3 6.9 5.2 6.5 1.8 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF3188 PF11384.8 gi|389847838|ref|YP_006350077.1| - 0.045 13.5 0.2 0.045 13.5 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) APH PF01636.23 gi|389847837|ref|YP_006350076.1| - 1.6e-15 57.7 0.3 2.7e-15 56.9 0.3 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family ABC-3 PF00950.17 gi|389847835|ref|YP_006350074.1| - 2.9e-58 197.4 42.8 3.4e-58 197.2 42.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|389847835|ref|YP_006350074.1| - 5.9e-06 25.5 36.4 5.9e-06 25.5 36.4 1.6 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.6 gi|389847835|ref|YP_006350074.1| - 0.035 14.3 1.0 0.099 12.8 1.0 1.7 1 0 0 1 1 1 0 DUF2407 C-terminal domain SLATT_6 PF18169.1 gi|389847835|ref|YP_006350074.1| - 0.25 11.0 4.8 3 7.4 0.7 2.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 ABC_tran PF00005.27 gi|389847834|ref|YP_006350073.1| - 2.8e-32 112.1 0.0 3.7e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847834|ref|YP_006350073.1| - 1.6e-11 44.6 0.4 1.1e-05 25.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389847834|ref|YP_006350073.1| - 3.3e-05 23.4 0.3 0.00059 19.3 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389847834|ref|YP_006350073.1| - 6.5e-05 22.6 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|389847834|ref|YP_006350073.1| - 0.0006 19.6 0.0 0.0011 18.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|389847834|ref|YP_006350073.1| - 0.0013 18.6 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|389847834|ref|YP_006350073.1| - 0.0014 18.9 0.1 0.042 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389847834|ref|YP_006350073.1| - 0.0022 18.4 0.2 0.0052 17.2 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|389847834|ref|YP_006350073.1| - 0.0038 17.7 0.0 0.0055 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|389847834|ref|YP_006350073.1| - 0.007 16.3 0.0 0.021 14.7 0.0 1.9 1 1 0 1 1 1 1 NTPase ABC_ATPase PF09818.9 gi|389847834|ref|YP_006350073.1| - 0.011 14.6 0.1 2.5 6.8 0.0 3.0 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Spore_IV_A PF09547.10 gi|389847834|ref|YP_006350073.1| - 0.012 14.6 0.0 0.017 14.0 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) NACHT PF05729.12 gi|389847834|ref|YP_006350073.1| - 0.02 14.8 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|389847834|ref|YP_006350073.1| - 0.022 15.0 0.7 0.59 10.4 0.7 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|389847834|ref|YP_006350073.1| - 0.04 14.1 0.1 0.068 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389847834|ref|YP_006350073.1| - 0.045 13.7 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 gi|389847834|ref|YP_006350073.1| - 0.045 13.8 0.1 0.085 12.9 0.0 1.5 2 0 0 2 2 1 0 Helicase HerA, central domain ATPase_2 PF01637.18 gi|389847834|ref|YP_006350073.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|389847834|ref|YP_006350073.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|389847834|ref|YP_006350073.1| - 0.11 11.6 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.18 gi|389847834|ref|YP_006350073.1| - 0.16 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family cobW PF02492.19 gi|389847834|ref|YP_006350073.1| - 0.16 11.5 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 gi|389847834|ref|YP_006350073.1| - 0.16 11.5 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|389847834|ref|YP_006350073.1| - 0.17 11.3 0.0 0.62 9.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|389847834|ref|YP_006350073.1| - 0.22 11.9 0.0 0.44 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF3584 PF12128.8 gi|389847834|ref|YP_006350073.1| - 0.28 8.7 0.0 0.38 8.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ZnuA PF01297.17 gi|389847833|ref|YP_006350072.1| - 1.8e-42 145.6 0.1 2.2e-42 145.2 0.1 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic GST_N_3 PF13417.6 gi|389847832|ref|YP_006350071.1| - 1.9e-15 57.1 0.0 2.2e-15 56.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|389847832|ref|YP_006350071.1| - 2.8e-15 56.3 0.0 3.6e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|389847832|ref|YP_006350071.1| - 3e-11 43.5 0.0 3.4e-11 43.3 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|389847832|ref|YP_006350071.1| - 1.1e-07 32.0 0.0 1.3e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|389847832|ref|YP_006350071.1| - 0.0029 18.0 0.0 0.0037 17.7 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DUF150 PF02576.17 gi|389847832|ref|YP_006350071.1| - 0.091 13.2 0.1 0.41 11.1 0.1 1.8 2 0 0 2 2 2 0 RimP N-terminal domain Cob_adeno_trans PF01923.18 gi|389847831|ref|YP_006350070.1| - 1.2e-55 188.1 0.1 1.4e-55 187.9 0.1 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Ceramidse_alk_C PF17048.5 gi|389847830|ref|YP_006350069.1| - 2.8e-05 24.0 0.0 5.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Neutral/alkaline non-lysosomal ceramidase, C-terminal ChlamPMP_M PF07548.11 gi|389847830|ref|YP_006350069.1| - 0.094 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Chlamydia polymorphic membrane protein middle domain HlyD PF00529.20 gi|389847830|ref|YP_006350069.1| - 0.11 12.4 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 HlyD membrane-fusion protein of T1SS Baculo_11_kDa PF06143.11 gi|662859547|ref|YP_006350068.2| - 0.13 11.8 0.4 0.17 11.4 0.4 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family CBS PF00571.28 gi|389847827|ref|YP_006350066.1| - 2.1e-36 124.2 8.0 2.5e-13 50.2 0.2 4.5 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|389847827|ref|YP_006350066.1| - 0.00066 20.4 0.7 0.026 15.3 0.0 2.7 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein Rad51 PF08423.11 gi|662859546|ref|YP_006350065.2| - 6.2e-31 107.6 0.0 7.8e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|662859546|ref|YP_006350065.2| - 2.6e-13 50.0 0.5 3.8e-13 49.5 0.5 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|662859546|ref|YP_006350065.2| - 1.2e-12 47.9 0.0 1.4e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|662859546|ref|YP_006350065.2| - 2.6e-10 40.0 0.0 4.4e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|662859546|ref|YP_006350065.2| - 8.8e-08 32.0 0.0 1e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|662859546|ref|YP_006350065.2| - 2.8e-07 30.5 0.0 7.4e-07 29.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|662859546|ref|YP_006350065.2| - 4.5e-05 23.9 0.2 6.9e-05 23.3 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|662859546|ref|YP_006350065.2| - 0.001 18.4 0.0 0.0029 17.0 0.0 1.7 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|662859546|ref|YP_006350065.2| - 0.041 13.6 0.1 0.084 12.6 0.1 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|662859546|ref|YP_006350065.2| - 0.064 13.2 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CobU PF02283.16 gi|662859546|ref|YP_006350065.2| - 0.079 12.5 0.3 0.27 10.8 0.3 1.7 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase CobA_CobO_BtuR PF02572.15 gi|662859546|ref|YP_006350065.2| - 0.1 12.8 1.1 0.41 10.9 1.1 2.0 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ABC_tran PF00005.27 gi|662859546|ref|YP_006350065.2| - 0.17 12.4 0.0 0.29 11.6 0.0 1.4 1 1 0 1 1 1 0 ABC transporter DUF460 PF04312.13 gi|389847825|ref|YP_006350064.1| - 0.0029 17.3 0.3 0.0053 16.5 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) YbbR PF07949.12 gi|389847825|ref|YP_006350064.1| - 0.029 14.7 0.4 0.074 13.4 0.1 1.8 2 0 0 2 2 2 0 YbbR-like protein Big_3_3 PF13750.6 gi|389847825|ref|YP_006350064.1| - 0.12 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Abhydrolase_1 PF00561.20 gi|389847824|ref|YP_006350063.1| - 1e-28 100.7 0.0 1.9e-28 99.8 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389847824|ref|YP_006350063.1| - 1e-18 68.8 3.0 1.3e-18 68.4 3.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389847824|ref|YP_006350063.1| - 1.4e-14 54.0 0.0 2e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|389847824|ref|YP_006350063.1| - 0.00097 17.9 0.0 0.0014 17.4 0.0 1.1 1 0 0 1 1 1 1 Ndr family DUF1057 PF06342.12 gi|389847824|ref|YP_006350063.1| - 0.016 14.3 0.0 0.022 13.8 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) FSH1 PF03959.13 gi|389847824|ref|YP_006350063.1| - 0.037 13.7 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PAF-AH_p_II PF03403.13 gi|389847824|ref|YP_006350063.1| - 0.18 10.3 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF111 PF01969.17 gi|389847823|ref|YP_006350062.1| - 1.1e-128 429.5 1.5 1.3e-128 429.3 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 AAA PF00004.29 gi|389847822|ref|YP_006350061.1| - 4.4e-101 334.6 0.0 1.6e-49 167.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|389847822|ref|YP_006350061.1| - 2.1e-31 107.5 5.1 2e-16 59.5 1.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|389847822|ref|YP_006350061.1| - 2.3e-31 107.8 0.0 1.4e-30 105.3 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|389847822|ref|YP_006350061.1| - 1.9e-15 57.0 0.0 6.4e-07 29.3 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|389847822|ref|YP_006350061.1| - 5.2e-15 56.2 2.1 3e-06 27.7 0.2 4.3 3 2 1 4 4 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|389847822|ref|YP_006350061.1| - 1.1e-14 54.6 1.4 3.4e-06 27.1 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) CDC48_2 PF02933.17 gi|389847822|ref|YP_006350061.1| - 3.1e-14 52.5 0.3 3e-13 49.3 0.3 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|389847822|ref|YP_006350061.1| - 8.8e-13 48.7 0.0 1.2e-05 25.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|389847822|ref|YP_006350061.1| - 1.3e-11 44.3 0.0 3.4e-05 23.2 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|389847822|ref|YP_006350061.1| - 5.2e-11 43.0 0.8 0.00084 19.6 0.0 4.3 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|389847822|ref|YP_006350061.1| - 9.3e-11 42.1 0.0 7.4e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|389847822|ref|YP_006350061.1| - 5.1e-08 32.8 0.0 0.011 15.5 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|389847822|ref|YP_006350061.1| - 6e-08 33.3 0.0 0.01 16.3 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|389847822|ref|YP_006350061.1| - 1e-07 32.0 0.0 0.008 16.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|389847822|ref|YP_006350061.1| - 2.5e-07 30.6 0.1 0.028 14.1 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_25 PF13481.6 gi|389847822|ref|YP_006350061.1| - 2.7e-07 30.3 1.4 1.6 8.3 0.0 4.5 4 0 0 4 4 4 2 AAA domain Mg_chelatase PF01078.21 gi|389847822|ref|YP_006350061.1| - 1.3e-06 28.0 0.1 0.041 13.2 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|389847822|ref|YP_006350061.1| - 1.4e-06 28.0 0.0 0.019 14.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|389847822|ref|YP_006350061.1| - 2.1e-06 28.1 0.0 0.11 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|389847822|ref|YP_006350061.1| - 3.6e-06 27.3 0.0 0.034 14.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain DUF815 PF05673.13 gi|389847822|ref|YP_006350061.1| - 6.5e-06 25.5 0.0 0.088 12.0 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|389847822|ref|YP_006350061.1| - 7.1e-06 25.5 0.3 0.39 10.0 0.0 3.5 3 0 0 3 3 3 2 KaiC ABC_tran PF00005.27 gi|389847822|ref|YP_006350061.1| - 1.2e-05 25.9 0.0 0.23 12.0 0.0 3.1 3 0 0 3 3 2 2 ABC transporter PhoH PF02562.16 gi|389847822|ref|YP_006350061.1| - 1.2e-05 24.9 0.1 0.43 10.0 0.0 3.4 3 0 0 3 3 3 2 PhoH-like protein AAA_11 PF13086.6 gi|389847822|ref|YP_006350061.1| - 1.2e-05 25.2 0.1 0.2 11.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|389847822|ref|YP_006350061.1| - 1.2e-05 25.1 0.0 0.14 12.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|389847822|ref|YP_006350061.1| - 1.5e-05 25.0 0.0 0.14 12.1 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|389847822|ref|YP_006350061.1| - 2e-05 24.0 0.2 0.046 13.0 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_24 PF13479.6 gi|389847822|ref|YP_006350061.1| - 3.3e-05 23.7 0.0 0.13 12.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|389847822|ref|YP_006350061.1| - 4.8e-05 23.4 0.0 5.9 6.7 0.0 4.1 2 2 2 4 4 4 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|389847822|ref|YP_006350061.1| - 6.9e-05 22.3 0.0 0.36 10.0 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|389847822|ref|YP_006350061.1| - 8.4e-05 21.9 0.0 0.17 11.0 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|389847822|ref|YP_006350061.1| - 9.2e-05 22.2 0.1 0.56 9.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|389847822|ref|YP_006350061.1| - 0.00029 20.0 0.1 0.24 10.5 0.1 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|389847822|ref|YP_006350061.1| - 0.00058 20.3 0.0 0.76 10.2 0.0 3.4 3 0 0 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|389847822|ref|YP_006350061.1| - 0.00061 19.9 0.0 1.3 9.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|389847822|ref|YP_006350061.1| - 0.00061 19.7 0.4 0.49 10.3 0.0 3.1 4 0 0 4 4 2 1 NACHT domain AAA_19 PF13245.6 gi|389847822|ref|YP_006350061.1| - 0.00094 19.5 0.7 1.4 9.3 0.0 2.9 2 1 1 3 3 2 1 AAA domain Vps4_C PF09336.10 gi|389847822|ref|YP_006350061.1| - 0.0016 18.4 0.5 0.014 15.3 0.0 2.8 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain IPT PF01745.16 gi|389847822|ref|YP_006350061.1| - 0.0024 17.3 0.3 1.1 8.6 0.0 2.9 3 0 0 3 3 3 1 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|389847822|ref|YP_006350061.1| - 0.0028 17.4 0.1 2.3 7.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase NTPase_1 PF03266.15 gi|389847822|ref|YP_006350061.1| - 0.0033 17.4 0.2 4.3 7.2 0.0 3.0 2 1 1 3 3 2 0 NTPase Bac_DnaA PF00308.18 gi|389847822|ref|YP_006350061.1| - 0.0045 16.9 0.0 2.6 7.8 0.0 2.8 2 2 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.15 gi|389847822|ref|YP_006350061.1| - 0.007 16.4 0.0 4.5 7.2 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit SKI PF01202.22 gi|389847822|ref|YP_006350061.1| - 0.0096 16.1 0.0 5.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Rad17 PF03215.15 gi|389847822|ref|YP_006350061.1| - 0.011 15.7 0.0 0.86 9.5 0.0 2.6 2 1 1 3 3 3 0 Rad17 P-loop domain CPT PF07931.12 gi|389847822|ref|YP_006350061.1| - 0.012 15.4 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein TniB PF05621.11 gi|389847822|ref|YP_006350061.1| - 0.014 14.8 0.0 8 5.8 0.0 3.4 4 0 0 4 4 3 0 Bacterial TniB protein Hydin_ADK PF17213.3 gi|389847822|ref|YP_006350061.1| - 0.019 15.3 0.2 5.5 7.2 0.0 2.9 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain Cytidylate_kin2 PF13189.6 gi|389847822|ref|YP_006350061.1| - 0.019 15.1 0.0 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family Viral_helicase1 PF01443.18 gi|389847822|ref|YP_006350061.1| - 0.024 14.4 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.12 gi|389847822|ref|YP_006350061.1| - 0.027 14.1 0.0 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Torsin PF06309.11 gi|389847822|ref|YP_006350061.1| - 0.029 14.5 0.0 4.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Torsin AFG1_ATPase PF03969.16 gi|389847822|ref|YP_006350061.1| - 0.032 13.1 0.0 2.9 6.7 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase KAP_NTPase PF07693.14 gi|389847822|ref|YP_006350061.1| - 0.054 12.7 0.0 4.3 6.5 0.0 2.4 2 1 0 2 2 2 0 KAP family P-loop domain Guanylate_kin PF00625.21 gi|389847822|ref|YP_006350061.1| - 0.13 12.0 0.4 46 3.6 0.0 3.6 3 1 1 4 4 3 0 Guanylate kinase PhoU PF01895.19 gi|389847821|ref|YP_006350060.1| - 3.9e-40 136.2 11.4 2.7e-20 72.6 1.8 2.2 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.27 gi|389847820|ref|YP_006350059.1| - 4.7e-30 104.9 0.0 1.7e-29 103.1 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389847820|ref|YP_006350059.1| - 3e-11 43.7 0.0 7.7e-05 22.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389847820|ref|YP_006350059.1| - 8e-08 32.0 0.2 1.6e-06 27.7 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389847820|ref|YP_006350059.1| - 5.8e-05 23.0 0.0 0.0043 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389847820|ref|YP_006350059.1| - 0.00037 20.5 0.0 0.00084 19.3 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 gi|389847820|ref|YP_006350059.1| - 0.0013 18.3 0.1 0.13 11.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|389847820|ref|YP_006350059.1| - 0.0019 17.9 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|389847820|ref|YP_006350059.1| - 0.0025 18.1 0.0 0.0064 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|389847820|ref|YP_006350059.1| - 0.0041 17.6 0.0 0.01 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|389847820|ref|YP_006350059.1| - 0.0073 16.0 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain DeoRC PF00455.22 gi|389847820|ref|YP_006350059.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_33 PF13671.6 gi|389847820|ref|YP_006350059.1| - 0.012 15.8 0.0 0.02 15.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Shigella_OspC PF06128.11 gi|389847820|ref|YP_006350059.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein AAA_16 PF13191.6 gi|389847820|ref|YP_006350059.1| - 0.027 14.9 0.1 0.092 13.1 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|389847820|ref|YP_006350059.1| - 0.056 13.4 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain PRK PF00485.18 gi|389847820|ref|YP_006350059.1| - 0.059 13.1 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family BPD_transp_1 PF00528.22 gi|389847819|ref|YP_006350058.1| - 6.1e-21 75.0 13.6 6.1e-21 75.0 13.6 4.6 1 1 3 4 4 4 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389847818|ref|YP_006350057.1| - 9.4e-18 64.6 19.0 9.4e-18 64.6 19.0 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|389847817|ref|YP_006350056.1| - 1.3e-30 107.1 0.5 1.8e-30 106.6 0.5 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|389847817|ref|YP_006350056.1| - 7e-20 71.0 0.0 1.1e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|389847817|ref|YP_006350056.1| - 0.085 12.7 0.5 0.16 11.8 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.19 gi|389847816|ref|YP_006350055.1| - 1.9e-21 76.3 6.4 2.3e-18 66.5 2.0 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|389847816|ref|YP_006350055.1| - 2.7e-12 46.3 0.0 6.1e-12 45.2 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF4375 PF14300.6 gi|389847816|ref|YP_006350055.1| - 0.11 12.8 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4375) HisKA PF00512.25 gi|389847816|ref|YP_006350055.1| - 6.3 6.9 7.9 0.47 10.5 0.2 2.8 3 1 1 4 4 4 0 His Kinase A (phospho-acceptor) domain Ribosomal_S8e PF01201.22 gi|389847815|ref|YP_006350054.1| - 1e-32 113.2 3.0 1.2e-32 113.0 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Phage_attach PF05354.11 gi|389847815|ref|YP_006350054.1| - 0.0022 17.9 0.2 0.0028 17.5 0.2 1.2 1 0 0 1 1 1 1 Phage Head-Tail Attachment Ribosomal_S7 PF00177.21 gi|389847815|ref|YP_006350054.1| - 0.026 14.2 0.1 0.036 13.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S7p/S5e DUF2240 PF09999.9 gi|389847814|ref|YP_006350053.1| - 8.5e-50 168.1 0.1 9.6e-50 168.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) HAD_2 PF13419.6 gi|389847812|ref|YP_006350051.1| - 1.9e-23 83.5 0.0 2.2e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389847812|ref|YP_006350051.1| - 1.2e-12 48.6 0.1 1.6e-12 48.2 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389847812|ref|YP_006350051.1| - 2.2e-12 46.9 0.0 6.2e-12 45.4 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|389847812|ref|YP_006350051.1| - 1.7e-06 28.6 0.3 2.1e-06 28.3 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.14 gi|389847812|ref|YP_006350051.1| - 0.00025 20.1 0.1 0.2 10.5 0.0 2.9 2 1 1 3 3 3 2 5' nucleotidase family HTH_31 PF13560.6 gi|389847812|ref|YP_006350051.1| - 0.041 14.2 0.5 0.13 12.6 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain NurA PF09376.10 gi|389847810|ref|YP_006350049.1| - 4.6e-13 49.4 0.0 6e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 NurA domain DUF5633 PF18656.1 gi|389847809|ref|YP_006350048.1| - 0.059 13.3 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5633) DUF87 PF01935.17 gi|389847808|ref|YP_006350047.1| - 1.2e-11 45.2 0.0 3.4e-11 43.7 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|389847808|ref|YP_006350047.1| - 2.3e-07 29.8 0.2 0.00057 18.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|389847808|ref|YP_006350047.1| - 0.0008 19.4 0.0 0.23 11.5 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|389847808|ref|YP_006350047.1| - 0.0035 16.3 0.0 0.0087 15.0 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|389847808|ref|YP_006350047.1| - 0.0043 16.0 0.0 0.26 10.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|389847808|ref|YP_006350047.1| - 0.0091 15.4 0.0 0.063 12.6 0.0 2.3 3 0 0 3 3 3 1 FtsK/SpoIIIE family DEAD PF00270.29 gi|389847808|ref|YP_006350047.1| - 0.03 14.1 0.0 0.88 9.3 0.0 2.2 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|389847808|ref|YP_006350047.1| - 0.035 14.4 0.0 0.31 11.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|389847808|ref|YP_006350047.1| - 0.096 11.7 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein HAS-barrel PF09378.10 gi|389847808|ref|YP_006350047.1| - 0.14 12.3 0.0 0.44 10.7 0.0 1.8 1 0 0 1 1 1 0 HAS barrel domain Viral_helicase1 PF01443.18 gi|389847808|ref|YP_006350047.1| - 0.15 11.7 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Usp PF00582.26 gi|389847807|ref|YP_006350046.1| - 6.8e-29 101.2 1.3 7.7e-29 101.0 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Nitroreductase PF00881.24 gi|389847806|ref|YP_006350045.1| - 1.8e-32 112.7 0.1 3.2e-32 111.9 0.1 1.4 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|389847806|ref|YP_006350045.1| - 3.7e-07 29.9 0.0 0.00072 19.2 0.0 2.9 2 1 1 3 3 3 3 Putative TM nitroreductase ATPase PF06745.13 gi|389847805|ref|YP_006350044.1| - 4.3e-53 180.0 0.0 5.1e-53 179.8 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|389847805|ref|YP_006350044.1| - 3.6e-07 30.0 0.0 5.8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|389847805|ref|YP_006350044.1| - 3.6e-06 25.9 0.1 6.5e-06 25.0 0.1 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|389847805|ref|YP_006350044.1| - 0.00011 21.6 0.0 0.039 13.3 0.0 2.2 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|389847805|ref|YP_006350044.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|389847805|ref|YP_006350044.1| - 0.013 15.2 0.0 0.035 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain Rad51 PF08423.11 gi|389847805|ref|YP_006350044.1| - 0.022 14.0 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Rad51 PhoH PF02562.16 gi|389847805|ref|YP_006350044.1| - 0.12 11.8 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein NAD_kinase PF01513.21 gi|389847804|ref|YP_006350043.1| - 1e-38 133.2 1.5 1.2e-38 133.0 1.5 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|389847804|ref|YP_006350043.1| - 0.092 12.4 0.2 0.18 11.4 0.2 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain NAD_binding_10 PF13460.6 gi|389847803|ref|YP_006350042.1| - 3.8e-42 144.3 3.7 4.6e-42 144.0 3.7 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|389847803|ref|YP_006350042.1| - 1.1e-14 54.6 0.0 1.7e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|389847803|ref|YP_006350042.1| - 4e-09 36.3 0.2 5.5e-09 35.8 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389847803|ref|YP_006350042.1| - 7.7e-06 25.1 0.1 1.1e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DapB_N PF01113.20 gi|389847803|ref|YP_006350042.1| - 0.03 14.5 0.1 0.048 13.8 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_4 PF07993.12 gi|389847803|ref|YP_006350042.1| - 0.16 11.1 0.1 2.3 7.3 0.0 2.4 1 1 1 2 2 2 0 Male sterility protein CPSase_L_D2 PF02786.17 gi|389847802|ref|YP_006350041.1| - 7.7e-97 322.9 0.2 2.6e-58 197.0 0.1 2.8 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|389847802|ref|YP_006350041.1| - 7.1e-25 87.7 0.0 1.7e-24 86.5 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|389847802|ref|YP_006350041.1| - 1.5e-13 50.6 0.0 9.1e-06 25.4 0.0 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|389847802|ref|YP_006350041.1| - 4.8e-13 49.1 0.1 4.8e-09 36.0 0.0 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|389847802|ref|YP_006350041.1| - 1.4e-12 47.6 0.1 5.4e-07 29.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|389847802|ref|YP_006350041.1| - 2.5e-10 40.6 0.2 4.8e-05 23.5 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Peptidase_S66 PF02016.15 gi|389847801|ref|YP_006350040.1| - 2.2e-24 85.9 0.0 3.1e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|389847801|ref|YP_006350040.1| - 3.5e-22 79.2 0.0 5.1e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Ish1 PF10281.9 gi|389847801|ref|YP_006350040.1| - 0.1 12.9 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein HTH_12 PF08461.10 gi|389847801|ref|YP_006350040.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Acetyltransf_17 PF17668.1 gi|389847797|ref|YP_006350036.1| - 1.5e-20 74.1 1.5 1.5e-20 74.1 1.5 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|389847797|ref|YP_006350036.1| - 2.2e-20 73.0 0.3 3.8e-20 72.2 0.3 1.4 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.7 gi|389847797|ref|YP_006350036.1| - 3.4e-20 72.4 0.1 3.3e-18 66.0 0.0 2.6 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain FxsA PF04186.13 gi|389847795|ref|YP_006350034.1| - 1.4e-32 112.0 6.5 1.9e-32 111.6 6.5 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein CcmD PF04995.14 gi|389847795|ref|YP_006350034.1| - 4.4 7.5 5.6 0.55 10.4 0.4 2.3 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Thioredox_DsbH PF03190.15 gi|662859545|ref|YP_006350033.2| - 1.4e-27 96.6 0.0 2.5e-27 95.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|662859545|ref|YP_006350033.2| - 1.9e-14 53.6 0.0 6.4e-14 51.9 0.0 1.9 3 0 0 3 3 3 1 Thioredoxin-like Thioredoxin PF00085.20 gi|662859545|ref|YP_006350033.2| - 8.9e-07 28.8 0.0 1.6e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|662859545|ref|YP_006350033.2| - 0.00015 22.2 0.0 0.00031 21.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.11 gi|662859545|ref|YP_006350033.2| - 0.017 14.4 0.0 6 6.0 0.0 2.4 2 1 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|662859545|ref|YP_006350033.2| - 0.071 12.6 0.1 5.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 Hydrolase_like PF13242.6 gi|662859545|ref|YP_006350033.2| - 0.086 12.9 0.1 0.25 11.4 0.1 1.9 1 0 0 1 1 1 0 HAD-hyrolase-like TrmB PF01978.19 gi|389847793|ref|YP_006350032.1| - 2.4e-20 72.2 0.1 4.1e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|389847793|ref|YP_006350032.1| - 0.011 15.7 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_9 PF08221.11 gi|389847793|ref|YP_006350032.1| - 0.024 14.7 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TRAF_BIRC3_bd PF16673.5 gi|389847793|ref|YP_006350032.1| - 0.025 14.3 0.1 0.067 13.0 0.1 1.7 1 0 0 1 1 1 0 TNF receptor-associated factor BIRC3 binding domain PDCD7 PF16021.5 gi|389847793|ref|YP_006350032.1| - 0.036 13.2 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 Programmed cell death protein 7 E2F_TDP PF02319.20 gi|389847793|ref|YP_006350032.1| - 0.07 13.2 0.2 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain Regulator_TrmB PF11495.8 gi|389847793|ref|YP_006350032.1| - 0.098 11.8 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB RNA_pol_A_CTD PF03118.15 gi|389847793|ref|YP_006350032.1| - 0.14 12.0 0.0 1.9 8.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain PLDc_2 PF13091.6 gi|389847793|ref|YP_006350032.1| - 0.15 12.0 0.0 0.49 10.3 0.0 1.9 2 0 0 2 2 2 0 PLD-like domain Holin_BhlA PF10960.8 gi|389847793|ref|YP_006350032.1| - 0.18 11.8 0.6 0.39 10.7 0.2 1.7 2 0 0 2 2 2 0 BhlA holin family GCHY-1 PF02649.14 gi|662859544|ref|YP_006350031.2| - 1.9e-75 253.7 0.9 2.2e-75 253.5 0.9 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Glyco_trans_1_3 PF13528.6 gi|662859544|ref|YP_006350031.2| - 0.044 13.0 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 1 NifU PF01106.17 gi|389847791|ref|YP_006350030.1| - 4e-13 49.3 0.0 5.2e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain DUF2114 PF09887.9 gi|389847791|ref|YP_006350030.1| - 0.0029 16.2 0.0 0.0032 16.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Hydrolase_like PF13242.6 gi|662859543|ref|YP_006350029.2| - 0.023 14.7 0.0 0.072 13.2 0.0 1.8 1 1 1 2 2 2 0 HAD-hyrolase-like Pyr_redox_2 PF07992.14 gi|389847789|ref|YP_006350028.1| - 1.7e-43 148.9 0.0 2.3e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|389847789|ref|YP_006350028.1| - 4.2e-09 36.2 0.0 4.1e-08 33.0 0.0 2.6 3 0 0 3 3 3 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox PF00070.27 gi|389847789|ref|YP_006350028.1| - 3.6e-08 33.9 0.1 0.0016 19.0 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389847789|ref|YP_006350028.1| - 2.6e-07 30.2 0.0 1.7e-06 27.6 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|389847789|ref|YP_006350028.1| - 0.0066 16.5 2.1 2.2 8.2 0.0 3.3 4 0 0 4 4 4 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|389847789|ref|YP_006350028.1| - 0.014 14.2 0.0 5.3 5.6 0.0 3.2 3 1 1 4 4 4 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|389847789|ref|YP_006350028.1| - 0.017 15.3 1.7 0.69 10.2 0.0 3.6 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|389847789|ref|YP_006350028.1| - 0.13 11.4 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|389847789|ref|YP_006350028.1| - 0.15 11.6 1.4 3.8 7.0 0.0 3.1 2 1 0 4 4 4 0 FAD dependent oxidoreductase HTH_20 PF12840.7 gi|389847788|ref|YP_006350027.1| - 5.6e-08 32.7 0.0 1.2e-07 31.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|389847788|ref|YP_006350027.1| - 0.039 13.5 3.8 2.6 7.6 0.1 3.1 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|389847788|ref|YP_006350027.1| - 0.046 14.1 1.3 13 6.2 0.0 3.1 3 0 0 3 3 3 0 Restriction alleviation protein Lar HTH_5 PF01022.20 gi|389847788|ref|YP_006350027.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DZR PF12773.7 gi|389847788|ref|YP_006350027.1| - 0.24 11.4 8.0 2.2 8.4 1.0 3.1 3 0 0 3 3 3 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|389847788|ref|YP_006350027.1| - 0.91 9.5 4.1 0.62 10.1 0.5 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|389847788|ref|YP_006350027.1| - 7.5 6.7 6.6 3.2 7.8 0.3 3.1 3 0 0 3 3 3 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|389847788|ref|YP_006350027.1| - 9.1 6.5 12.2 11 6.3 0.2 4.0 4 0 0 4 4 4 0 Zinc ribbon domain DUF4375 PF14300.6 gi|389847787|ref|YP_006350026.1| - 0.018 15.3 0.2 0.062 13.6 0.1 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4375) DUF3546 PF12066.8 gi|389847787|ref|YP_006350026.1| - 0.065 13.4 0.5 0.29 11.3 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3546) MatE PF01554.18 gi|389847786|ref|YP_006350025.1| - 6.2e-62 208.0 28.7 1.3e-35 122.5 8.6 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|389847786|ref|YP_006350025.1| - 2e-08 34.4 18.0 7.1e-07 29.4 6.7 5.3 4 3 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain TetR_C_6 PF13977.6 gi|389847785|ref|YP_006350024.1| - 1.3e-12 47.9 5.3 2.9e-12 46.8 5.3 1.6 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|389847785|ref|YP_006350024.1| - 6.3e-11 41.9 0.2 1.1e-10 41.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|389847785|ref|YP_006350024.1| - 1e-07 32.2 0.3 2.7e-07 30.9 0.3 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|389847785|ref|YP_006350024.1| - 1.2e-06 28.5 0.0 2.3e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|389847785|ref|YP_006350024.1| - 0.0012 19.0 6.1 0.003 17.8 3.8 2.3 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|389847785|ref|YP_006350024.1| - 0.0075 16.3 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|389847785|ref|YP_006350024.1| - 0.029 14.4 0.4 0.055 13.5 0.4 1.5 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain Amino_oxidase PF01593.24 gi|389847784|ref|YP_006350023.1| - 9e-39 134.0 0.2 2.3e-38 132.7 0.2 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|389847784|ref|YP_006350023.1| - 5.5e-15 55.3 0.6 2.6e-14 53.2 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|389847784|ref|YP_006350023.1| - 5.2e-08 32.5 1.4 0.00017 20.9 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|389847784|ref|YP_006350023.1| - 7.3e-08 32.4 5.4 2.1e-06 27.6 5.4 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|389847784|ref|YP_006350023.1| - 8.5e-06 25.4 0.2 0.00011 21.7 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389847784|ref|YP_006350023.1| - 1e-05 24.8 2.9 3.2e-05 23.2 1.1 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|389847784|ref|YP_006350023.1| - 0.00036 19.4 1.1 0.0059 15.4 0.8 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|389847784|ref|YP_006350023.1| - 0.0006 20.3 2.9 0.0021 18.6 0.4 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|389847784|ref|YP_006350023.1| - 0.00063 19.8 0.8 0.16 11.9 0.2 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|389847784|ref|YP_006350023.1| - 0.0038 16.5 0.1 0.12 11.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|389847784|ref|YP_006350023.1| - 0.0077 15.3 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|389847784|ref|YP_006350023.1| - 0.021 13.9 0.1 0.021 13.9 0.1 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|389847784|ref|YP_006350023.1| - 0.048 13.0 0.1 0.093 12.0 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HTH_39 PF14090.6 gi|389847784|ref|YP_006350023.1| - 0.067 13.0 0.2 0.73 9.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Thi4 PF01946.17 gi|389847784|ref|YP_006350023.1| - 0.068 12.4 0.7 0.28 10.4 0.5 2.0 2 0 0 2 2 2 0 Thi4 family YjeF_N PF03853.15 gi|389847784|ref|YP_006350023.1| - 0.075 12.9 0.1 0.3 10.9 0.0 1.9 2 0 0 2 2 2 0 YjeF-related protein N-terminus MCRA PF06100.11 gi|389847784|ref|YP_006350023.1| - 0.092 11.5 0.5 0.22 10.3 0.1 1.7 2 0 0 2 2 2 0 MCRA family FAD_binding_3 PF01494.19 gi|389847784|ref|YP_006350023.1| - 0.22 10.7 5.1 0.042 13.1 1.0 1.8 2 0 0 2 2 2 0 FAD binding domain F420_oxidored PF03807.17 gi|389847784|ref|YP_006350023.1| - 0.3 11.7 1.3 1.5 9.4 0.6 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HisKA_7TM PF16927.5 gi|389847783|ref|YP_006350022.1| - 1.1e-51 176.0 16.1 1.6e-51 175.5 16.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|389847783|ref|YP_006350022.1| - 4e-16 59.5 0.0 7.4e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389847783|ref|YP_006350022.1| - 1.2e-14 54.0 0.4 4.2e-14 52.3 0.1 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|389847783|ref|YP_006350022.1| - 9.3e-09 35.5 1.2 2e-07 31.2 1.2 2.6 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|389847783|ref|YP_006350022.1| - 5.5e-07 29.5 0.2 2.4e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|389847783|ref|YP_006350022.1| - 3e-06 27.2 0.0 1.3e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|389847783|ref|YP_006350022.1| - 0.002 18.1 0.1 0.0039 17.1 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 gi|389847783|ref|YP_006350022.1| - 0.24 11.5 6.5 0.2 11.8 0.9 2.5 2 1 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain GHMP_kinases_N PF00288.26 gi|389847782|ref|YP_006350021.1| - 1.1e-14 54.4 1.6 2.3e-14 53.4 1.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|389847782|ref|YP_006350021.1| - 1.6e-06 28.4 0.1 3.5e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Usp PF00582.26 gi|662859542|ref|YP_006350020.2| - 2.7e-16 60.3 1.3 3.5e-16 60.0 1.3 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|662859542|ref|YP_006350020.2| - 0.068 13.1 0.7 0.14 12.0 0.6 1.5 1 1 0 1 1 1 0 Electron transfer flavoprotein domain SOR_SNZ PF01680.17 gi|389847780|ref|YP_006350019.1| - 1.7e-103 344.8 5.3 2.1e-103 344.5 5.3 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|389847780|ref|YP_006350019.1| - 3.1e-09 36.5 5.3 0.00012 21.4 0.5 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|389847780|ref|YP_006350019.1| - 0.0045 16.1 0.5 1.5 7.8 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|389847780|ref|YP_006350019.1| - 0.021 14.0 0.2 0.95 8.6 0.0 2.3 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|389847780|ref|YP_006350019.1| - 0.037 13.6 0.2 0.074 12.6 0.1 1.6 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF1405 PF07187.11 gi|389847779|ref|YP_006350018.1| - 5.6e-53 179.1 14.2 7.1e-53 178.8 14.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) DUF2839 PF10999.8 gi|389847779|ref|YP_006350018.1| - 8.1 6.9 6.1 16 6.0 3.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) TAT_signal PF10518.9 gi|389847775|ref|YP_006350014.1| - 0.062 13.2 2.0 0.14 12.0 2.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MFS_MOT1 PF16983.5 gi|389847773|ref|YP_006350012.1| - 4.1e-44 149.5 35.9 3.5e-23 82.1 12.0 3.3 2 1 1 3 3 3 3 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|389847773|ref|YP_006350012.1| - 7.8e-08 31.5 21.4 4.8e-07 28.9 8.4 2.5 1 1 1 2 2 2 2 Sulfate permease family DUF3087 PF11286.8 gi|389847773|ref|YP_006350012.1| - 1 8.8 4.2 0.49 9.9 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) Isochorismatase PF00857.20 gi|389847772|ref|YP_006350011.1| - 2.2e-35 122.4 0.0 4.7e-35 121.3 0.0 1.5 1 1 0 1 1 1 1 Isochorismatase family YqcI_YcgG PF08892.11 gi|662859541|ref|YP_006350010.2| - 3.2e-76 255.9 0.0 3.7e-76 255.6 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Acetyltransf_1 PF00583.25 gi|389847770|ref|YP_006350009.1| - 4.4e-15 55.9 0.0 5.1e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389847770|ref|YP_006350009.1| - 1e-10 41.6 0.0 1.4e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389847770|ref|YP_006350009.1| - 3.6e-10 40.1 0.0 6.5e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847770|ref|YP_006350009.1| - 4e-06 26.7 0.0 6.4e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|389847770|ref|YP_006350009.1| - 0.00069 20.3 0.0 0.00085 20.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389847770|ref|YP_006350009.1| - 0.001 19.1 0.0 0.0018 18.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389847770|ref|YP_006350009.1| - 0.0096 16.0 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase SSF PF00474.17 gi|389847768|ref|YP_006350007.1| - 1.8e-49 168.7 29.0 2.4e-49 168.3 29.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.8 gi|389847767|ref|YP_006350006.1| - 1.3e-15 57.1 14.0 1.5e-15 56.9 14.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) AP_endonuc_2 PF01261.24 gi|389847766|ref|YP_006350005.1| - 2.2e-23 82.8 2.7 3.1e-23 82.3 1.5 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Toprim_4 PF13662.6 gi|389847765|ref|YP_006350004.1| - 3.6e-13 49.8 0.2 9.1e-13 48.5 0.2 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|389847765|ref|YP_006350004.1| - 1.1e-05 25.8 0.0 2.6e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|389847765|ref|YP_006350004.1| - 0.027 14.7 0.2 0.5 10.6 0.2 2.7 1 1 0 1 1 1 0 Toprim domain Acetyltransf_10 PF13673.7 gi|389847764|ref|YP_006350003.1| - 1.8e-10 40.8 0.0 2e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389847764|ref|YP_006350003.1| - 3.5e-07 30.4 0.0 4.8e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389847764|ref|YP_006350003.1| - 1e-06 29.1 0.0 1.4e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847764|ref|YP_006350003.1| - 0.00024 21.0 0.0 0.00035 20.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein TPR_14 PF13428.6 gi|389847764|ref|YP_006350003.1| - 0.13 13.1 3.0 18 6.5 0.0 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF92 PF01940.16 gi|662859540|ref|YP_006350002.2| - 7.4e-49 166.3 23.2 7.4e-49 166.3 23.2 3.6 2 2 0 2 2 2 1 Integral membrane protein DUF92 Prenyltransf PF01255.19 gi|389847762|ref|YP_006350001.1| - 3.8e-23 82.2 0.0 8.2e-23 81.1 0.0 1.4 1 1 0 2 2 2 1 Putative undecaprenyl diphosphate synthase Serpin PF00079.20 gi|389847761|ref|YP_006350000.1| - 2e-108 363.0 0.0 2.6e-108 362.7 0.0 1.1 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Prenyltransf PF01255.19 gi|389847760|ref|YP_006349999.1| - 6.8e-64 215.5 0.0 8.4e-64 215.1 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Arm-DNA-bind_3 PF13356.6 gi|389847760|ref|YP_006349999.1| - 0.1 13.0 1.2 0.29 11.5 0.9 1.9 2 0 0 2 2 2 0 Arm DNA-binding domain AsnC_trans_reg2 PF17805.1 gi|389847758|ref|YP_006349997.1| - 3.1e-49 165.0 0.3 1.9e-23 82.4 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain NAD_binding_7 PF13241.6 gi|389847757|ref|YP_006349996.1| - 1.1e-22 80.4 0.2 2.2e-22 79.4 0.1 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|389847757|ref|YP_006349996.1| - 2.4e-09 36.5 0.1 5.1e-08 32.2 0.0 2.6 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|389847757|ref|YP_006349996.1| - 0.0076 16.0 1.0 0.018 14.7 1.0 1.7 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region TrkA_N PF02254.18 gi|389847757|ref|YP_006349996.1| - 0.022 15.0 0.2 0.064 13.5 0.2 1.8 1 1 0 1 1 1 0 TrkA-N domain PALP PF00291.25 gi|389847757|ref|YP_006349996.1| - 0.047 13.1 2.2 0.33 10.3 2.2 1.9 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme GlutR_N PF05201.15 gi|389847756|ref|YP_006349995.1| - 1.6e-33 115.5 0.9 2.8e-33 114.8 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|389847756|ref|YP_006349995.1| - 6.4e-33 113.7 2.0 6.6e-33 113.7 0.3 1.8 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|389847756|ref|YP_006349995.1| - 6.5e-21 74.6 0.9 1.4e-20 73.5 0.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|389847756|ref|YP_006349995.1| - 1.3e-05 24.8 2.2 3.3e-05 23.5 0.8 2.3 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus F420_oxidored PF03807.17 gi|389847756|ref|YP_006349995.1| - 0.0052 17.3 2.6 0.0076 16.8 0.4 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.21 gi|389847756|ref|YP_006349995.1| - 0.033 13.5 0.2 0.084 12.2 0.2 1.7 1 1 0 1 1 1 0 ThiF family zf-C4H2 PF10146.9 gi|389847756|ref|YP_006349995.1| - 0.036 14.4 0.0 0.071 13.4 0.0 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein NAD_binding_7 PF13241.6 gi|389847756|ref|YP_006349995.1| - 0.045 14.2 0.9 0.094 13.2 0.2 1.9 1 1 1 2 2 2 0 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|389847756|ref|YP_006349995.1| - 0.14 12.4 2.1 0.14 12.4 0.3 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF1690 PF07956.11 gi|389847756|ref|YP_006349995.1| - 0.65 10.4 4.0 0.39 11.1 1.8 1.7 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) Dmrt1 PF12374.8 gi|389847755|ref|YP_006349994.1| - 0.038 14.4 0.1 0.11 13.0 0.0 1.7 2 0 0 2 2 2 0 Double-sex mab3 related transcription factor 1 Pterin_4a PF01329.19 gi|389847754|ref|YP_006349993.1| - 7.4e-28 96.6 0.0 9e-28 96.3 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.8 gi|389847754|ref|YP_006349993.1| - 0.096 12.8 0.0 0.22 11.7 0.0 1.5 1 1 0 1 1 1 0 Translation-initiation factor 2 HAD_2 PF13419.6 gi|389847752|ref|YP_006349991.1| - 9.7e-16 58.4 0.0 1.5e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389847752|ref|YP_006349991.1| - 6.1e-09 36.5 1.8 9.6e-09 35.9 1.8 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389847752|ref|YP_006349991.1| - 9.6e-09 35.8 0.0 2.5e-07 31.2 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Response_reg PF00072.24 gi|662859538|ref|YP_006349990.2| - 1.3e-12 47.8 0.0 2.9e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HalOD1 PF18545.1 gi|662859538|ref|YP_006349990.2| - 3.5e-12 46.4 0.2 2.5e-11 43.7 0.0 2.4 2 0 0 2 2 2 1 Halobacterial output domain 1 OKR_DC_1_N PF03709.15 gi|662859538|ref|YP_006349990.2| - 0.0033 17.7 0.0 0.007 16.6 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MoeA_N PF03453.17 gi|389847750|ref|YP_006349989.1| - 2.6e-41 141.0 4.4 2.6e-41 141.0 4.4 2.0 3 0 0 3 3 3 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|389847750|ref|YP_006349989.1| - 8.9e-24 83.8 0.0 1.5e-23 83.0 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|389847750|ref|YP_006349989.1| - 1.4e-23 83.1 0.0 5.5e-23 81.1 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|389847750|ref|YP_006349989.1| - 2.6e-13 50.0 0.1 1.2e-12 47.8 0.1 2.2 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|389847750|ref|YP_006349989.1| - 0.0014 18.4 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein MoeA_N PF03453.17 gi|389847749|ref|YP_006349988.1| - 2.2e-40 138.0 2.7 4.1e-40 137.1 2.7 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|389847749|ref|YP_006349988.1| - 1.1e-25 89.9 0.1 2e-25 89.1 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|389847749|ref|YP_006349988.1| - 1.2e-18 67.0 0.0 3.7e-18 65.5 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) HSP20 PF00011.21 gi|389847748|ref|YP_006349987.1| - 1.1e-09 38.3 0.0 1.5e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389847748|ref|YP_006349987.1| - 3.7e-05 23.2 0.1 0.00016 21.1 0.1 2.0 1 1 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|389847748|ref|YP_006349987.1| - 0.085 13.3 0.0 0.18 12.2 0.0 1.6 1 1 0 1 1 1 0 PIH1 CS-like domain CNF1 PF05785.12 gi|389847748|ref|YP_006349987.1| - 0.09 12.0 0.0 0.14 11.4 0.0 1.3 1 1 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor ABC1 PF03109.16 gi|389847747|ref|YP_006349986.1| - 1.3e-28 99.5 0.0 2.9e-28 98.4 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|389847747|ref|YP_006349986.1| - 0.0024 17.8 0.2 0.017 15.0 0.1 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Rhomboid PF01694.22 gi|389847747|ref|YP_006349986.1| - 0.023 14.7 0.2 0.04 13.9 0.2 1.3 1 0 0 1 1 1 0 Rhomboid family Pkinase PF00069.25 gi|389847747|ref|YP_006349986.1| - 0.059 12.7 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein kinase domain DUF5518 PF17647.1 gi|389847746|ref|YP_006349985.1| - 1.3e-09 38.2 10.7 1.6e-09 37.9 10.7 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) EFP_N PF08207.12 gi|389847745|ref|YP_006349984.1| - 0.00099 19.1 0.0 0.0042 17.1 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|389847745|ref|YP_006349984.1| - 0.058 13.5 0.6 0.1 12.7 0.6 1.5 1 0 0 1 1 1 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Arginase PF00491.21 gi|389847744|ref|YP_006349983.1| - 3.5e-55 187.5 0.2 4.3e-55 187.2 0.2 1.1 1 0 0 1 1 1 1 Arginase family NIF3 PF01784.18 gi|389847743|ref|YP_006349982.1| - 1.3e-52 178.9 0.0 1.5e-52 178.6 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Usp PF00582.26 gi|389847743|ref|YP_006349982.1| - 0.0047 17.4 0.5 0.31 11.6 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family Pyr_redox_2 PF07992.14 gi|389847742|ref|YP_006349981.1| - 5.9e-09 35.6 1.3 6.6e-06 25.6 0.1 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389847742|ref|YP_006349981.1| - 3.1e-08 33.2 0.5 0.0014 18.0 0.1 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|389847742|ref|YP_006349981.1| - 7.4e-07 28.5 0.4 0.0029 16.7 0.2 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|389847742|ref|YP_006349981.1| - 0.00017 20.4 0.0 0.006 15.3 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|389847742|ref|YP_006349981.1| - 0.001 18.4 1.8 0.0019 17.5 0.1 2.2 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|389847742|ref|YP_006349981.1| - 0.0023 18.1 0.3 0.0065 16.7 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|389847742|ref|YP_006349981.1| - 0.0026 17.2 7.0 0.0077 15.6 1.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389847742|ref|YP_006349981.1| - 0.0071 15.5 0.7 0.0071 15.5 0.7 3.4 2 1 0 2 2 1 1 FAD binding domain GIDA PF01134.22 gi|389847742|ref|YP_006349981.1| - 0.025 13.7 1.0 0.025 13.7 1.0 2.5 2 1 1 3 3 3 0 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|389847742|ref|YP_006349981.1| - 0.05 14.2 2.4 0.32 11.6 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|389847742|ref|YP_006349981.1| - 0.06 12.6 0.3 0.15 11.3 0.1 1.7 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 gi|389847742|ref|YP_006349981.1| - 0.12 12.4 0.1 0.12 12.4 0.1 3.1 3 1 0 3 3 3 0 FAD-NAD(P)-binding DAO PF01266.24 gi|389847742|ref|YP_006349981.1| - 0.28 10.7 21.6 0.079 12.5 3.1 4.1 2 1 2 4 4 4 0 FAD dependent oxidoreductase Peripla_BP_2 PF01497.18 gi|389847741|ref|YP_006349980.1| - 2.7e-12 46.8 0.0 4.1e-12 46.2 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein DS PF01916.17 gi|389847740|ref|YP_006349979.1| - 3.3e-99 331.8 0.0 3.9e-99 331.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CENP-B_dimeris PF09026.10 gi|389847739|ref|YP_006349978.1| - 0.014 15.8 2.8 0.028 14.8 2.8 1.5 1 0 0 1 1 1 0 Centromere protein B dimerisation domain ATP-synt_J PF04911.12 gi|389847739|ref|YP_006349978.1| - 0.19 11.3 0.1 0.91 9.1 0.0 2.1 2 0 0 2 2 2 0 ATP synthase j chain DNA_pol_phi PF04931.13 gi|389847739|ref|YP_006349978.1| - 0.6 8.1 4.1 0.78 7.8 4.1 1.1 1 0 0 1 1 1 0 DNA polymerase phi Glyoxalase PF00903.25 gi|389847738|ref|YP_006349977.1| - 3.5e-08 33.7 0.5 4.8e-08 33.3 0.5 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389847738|ref|YP_006349977.1| - 0.0045 17.3 0.0 0.0071 16.6 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GST_N_2 PF13409.6 gi|389847737|ref|YP_006349976.1| - 7.5e-17 61.4 0.0 8.5e-16 58.0 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|389847737|ref|YP_006349976.1| - 3.2e-12 46.3 0.2 7.6e-12 45.1 0.2 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|389847737|ref|YP_006349976.1| - 6.1e-09 36.0 0.1 9e-09 35.4 0.1 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|389847737|ref|YP_006349976.1| - 5.8e-07 29.6 0.0 1.1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|389847737|ref|YP_006349976.1| - 0.014 15.8 0.0 3.5 8.1 0.0 2.8 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|389847737|ref|YP_006349976.1| - 0.083 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Pyridoxal_deC PF00282.19 gi|389847736|ref|YP_006349975.1| - 4.8e-76 255.9 0.0 5.6e-76 255.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SepSecS PF05889.13 gi|389847736|ref|YP_006349975.1| - 0.0021 16.8 0.0 0.0035 16.1 0.0 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|389847736|ref|YP_006349975.1| - 0.0077 15.5 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|389847736|ref|YP_006349975.1| - 0.018 14.0 0.0 0.029 13.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|389847736|ref|YP_006349975.1| - 0.18 10.9 0.0 0.32 10.1 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II HxlR PF01638.17 gi|389847735|ref|YP_006349974.1| - 1.5e-22 79.3 0.0 1.9e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|389847735|ref|YP_006349974.1| - 0.0024 17.7 0.0 0.0037 17.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|389847735|ref|YP_006349974.1| - 0.0074 16.5 0.0 0.0099 16.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|389847735|ref|YP_006349974.1| - 0.011 15.7 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.6 gi|389847735|ref|YP_006349974.1| - 0.019 15.0 0.0 0.023 14.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Trp_repressor PF01371.19 gi|389847735|ref|YP_006349974.1| - 0.042 14.0 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_5 PF01022.20 gi|389847735|ref|YP_006349974.1| - 0.047 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|389847735|ref|YP_006349974.1| - 0.07 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PhageMin_Tail PF10145.9 gi|389847734|ref|YP_006349973.1| - 0.013 15.3 0.6 0.014 15.3 0.6 1.0 1 0 0 1 1 1 0 Phage-related minor tail protein Phage-MuB_C PF09077.11 gi|389847734|ref|YP_006349973.1| - 0.016 15.1 0.1 0.016 15.0 0.1 1.1 1 0 0 1 1 1 0 Mu B transposition protein, C terminal CMD PF02627.20 gi|389847734|ref|YP_006349973.1| - 0.016 15.2 0.7 0.018 15.1 0.7 1.0 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family MarR_2 PF12802.7 gi|389847733|ref|YP_006349972.1| - 0.00069 19.5 0.0 0.0018 18.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|389847733|ref|YP_006349972.1| - 0.0025 17.6 0.1 0.0064 16.3 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389847733|ref|YP_006349972.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pro-kuma_activ PF09286.11 gi|389847733|ref|YP_006349972.1| - 0.19 12.0 0.0 0.32 11.3 0.0 1.2 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain FAD_binding_4 PF01565.23 gi|389847732|ref|YP_006349971.1| - 2.1e-36 124.7 1.2 3.2e-36 124.1 1.2 1.3 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|389847732|ref|YP_006349971.1| - 2.9e-09 36.9 0.0 5.8e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like DUF3046 PF11248.8 gi|389847732|ref|YP_006349971.1| - 0.029 14.8 0.0 5 7.6 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3046) Pribosyltran PF00156.27 gi|389847731|ref|YP_006349970.1| - 6.8e-16 58.2 1.9 9.7e-16 57.7 1.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389847731|ref|YP_006349970.1| - 0.00052 19.5 0.0 0.00072 19.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|389847731|ref|YP_006349970.1| - 0.028 13.9 0.4 0.04 13.4 0.4 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Xan_ur_permease PF00860.20 gi|389847730|ref|YP_006349969.1| - 2.1e-84 283.5 43.9 2.7e-84 283.2 43.9 1.1 1 0 0 1 1 1 1 Permease family DUF1910 PF08928.10 gi|389847729|ref|YP_006349968.1| - 0.0095 15.9 0.3 0.12 12.4 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1910) Ion_trans_2 PF07885.16 gi|389847728|ref|YP_006349967.1| - 7.8e-18 64.2 8.3 1.1e-17 63.7 4.5 2.5 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|389847728|ref|YP_006349967.1| - 3.6e-15 55.9 14.7 5e-15 55.4 14.7 1.1 1 0 0 1 1 1 1 Ion transport protein zf-ribbon_3 PF13248.6 gi|389847728|ref|YP_006349967.1| - 0.019 14.4 3.4 0.044 13.2 3.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389847728|ref|YP_006349967.1| - 0.087 12.3 2.1 2.7 7.6 0.3 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding DZR PF12773.7 gi|389847728|ref|YP_006349967.1| - 0.097 12.7 0.2 0.15 12.1 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|389847728|ref|YP_006349967.1| - 0.19 11.7 0.6 0.31 11.1 0.6 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|389847728|ref|YP_006349967.1| - 0.25 11.5 2.0 0.47 10.7 2.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e OrfB_Zn_ribbon PF07282.11 gi|389847728|ref|YP_006349967.1| - 0.57 10.1 3.1 1.6 8.7 0.3 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain ADK_lid PF05191.14 gi|389847728|ref|YP_006349967.1| - 1.8 8.6 4.2 4.3 7.4 4.2 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid FAA_hydrolase PF01557.18 gi|389847727|ref|YP_006349966.1| - 1.8e-45 155.3 0.0 2.2e-45 155.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family eIF-5_eIF-2B PF01873.17 gi|389847725|ref|YP_006349964.1| - 4.1e-30 104.1 0.0 6.2e-30 103.5 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|389847725|ref|YP_006349964.1| - 6.5e-08 32.5 0.4 1e-07 31.8 0.4 1.3 1 0 0 1 1 1 1 TRAM domain Zn-ribbon_8 PF09723.10 gi|389847725|ref|YP_006349964.1| - 0.044 13.9 0.2 2.2 8.5 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|389847725|ref|YP_006349964.1| - 0.083 13.3 0.3 2.2 8.7 0.4 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar CysA_C_terminal PF17850.1 gi|389847725|ref|YP_006349964.1| - 0.21 12.2 1.2 0.65 10.6 0.3 2.3 2 0 0 2 2 2 0 CysA C-terminal regulatory domain DNA_RNApol_7kD PF03604.13 gi|389847725|ref|YP_006349964.1| - 1 9.1 3.1 9.8 6.0 3.1 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Usp PF00582.26 gi|662859537|ref|YP_006349962.2| - 1.8e-31 109.5 0.6 2e-31 109.4 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|662859537|ref|YP_006349962.2| - 0.022 14.8 0.2 0.038 14.0 0.2 1.4 1 1 0 1 1 1 0 DNA photolyase DUF2786 PF10979.8 gi|662859537|ref|YP_006349962.2| - 0.024 14.6 1.1 0.024 14.6 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) SelR PF01641.18 gi|389847722|ref|YP_006349961.1| - 2.7e-52 176.0 0.1 3.1e-52 175.8 0.1 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_10 PF10058.9 gi|389847722|ref|YP_006349961.1| - 0.0039 16.9 0.1 0.36 10.6 0.0 2.3 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Yippee-Mis18 PF03226.14 gi|389847722|ref|YP_006349961.1| - 0.035 14.3 0.3 0.075 13.2 0.3 1.6 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly HECT_2 PF09814.9 gi|389847722|ref|YP_006349961.1| - 0.06 12.2 0.0 0.94 8.3 0.0 1.9 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Zn_ribbon_SprT PF17283.2 gi|389847722|ref|YP_006349961.1| - 0.15 12.0 0.7 0.15 12.0 0.7 1.9 2 0 0 2 2 2 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|389847722|ref|YP_006349961.1| - 1.4 8.5 8.2 4.3 6.9 0.4 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding ATPase PF06745.13 gi|389847720|ref|YP_006349959.1| - 2.9e-43 147.9 0.0 3.3e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|389847720|ref|YP_006349959.1| - 7.9e-06 24.8 0.0 3.9e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|389847720|ref|YP_006349959.1| - 1.3e-05 24.9 0.0 2.4e-05 24.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|389847720|ref|YP_006349959.1| - 5.3e-05 23.1 0.0 0.00013 21.8 0.0 1.6 2 0 0 2 2 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_14 PF13173.6 gi|389847720|ref|YP_006349959.1| - 0.00023 21.2 0.0 0.00043 20.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|389847720|ref|YP_006349959.1| - 0.00023 20.6 0.0 0.00032 20.1 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|389847720|ref|YP_006349959.1| - 0.00029 20.6 0.0 0.00059 19.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RecA PF00154.21 gi|389847720|ref|YP_006349959.1| - 0.00048 19.7 0.0 0.0027 17.2 0.0 1.9 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_22 PF13401.6 gi|389847720|ref|YP_006349959.1| - 0.0016 18.7 0.2 0.0077 16.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|389847720|ref|YP_006349959.1| - 0.0019 17.9 0.0 0.0095 15.7 0.0 1.9 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|389847720|ref|YP_006349959.1| - 0.0029 17.5 0.0 0.0039 17.1 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|389847720|ref|YP_006349959.1| - 0.0053 16.5 0.0 0.025 14.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|389847720|ref|YP_006349959.1| - 0.0055 17.1 0.0 0.0073 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389847720|ref|YP_006349959.1| - 0.01 16.0 0.1 0.022 14.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389847720|ref|YP_006349959.1| - 0.011 16.1 0.0 0.019 15.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|389847720|ref|YP_006349959.1| - 0.011 16.2 0.1 0.025 15.0 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|389847720|ref|YP_006349959.1| - 0.011 15.3 0.0 0.028 14.0 0.0 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|389847720|ref|YP_006349959.1| - 0.012 15.9 0.0 0.044 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|389847720|ref|YP_006349959.1| - 0.02 14.9 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DAP3 PF10236.9 gi|389847720|ref|YP_006349959.1| - 0.032 13.4 0.0 0.054 12.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 NACHT PF05729.12 gi|389847720|ref|YP_006349959.1| - 0.033 14.1 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|389847720|ref|YP_006349959.1| - 0.039 14.4 0.0 0.07 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|389847720|ref|YP_006349959.1| - 0.049 12.7 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|389847720|ref|YP_006349959.1| - 0.11 13.0 0.1 0.17 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|389847720|ref|YP_006349959.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|389847720|ref|YP_006349959.1| - 0.14 11.7 0.0 0.84 9.2 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|389847720|ref|YP_006349959.1| - 0.16 11.4 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Glyco_hydro_18 PF00704.28 gi|389847720|ref|YP_006349959.1| - 0.17 11.6 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 18 AAA_11 PF13086.6 gi|389847720|ref|YP_006349959.1| - 0.2 11.4 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Aldo_ket_red PF00248.21 gi|389847719|ref|YP_006349958.1| - 7e-56 189.6 0.0 4.9e-54 183.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family B12-binding PF02310.19 gi|389847719|ref|YP_006349958.1| - 0.052 13.6 0.0 0.44 10.6 0.0 2.2 1 1 1 2 2 2 0 B12 binding domain HAD_2 PF13419.6 gi|389847718|ref|YP_006349957.1| - 9.7e-15 55.1 0.0 1.4e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389847718|ref|YP_006349957.1| - 1.6e-10 40.9 0.2 4.6e-10 39.4 0.1 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|389847718|ref|YP_006349957.1| - 4.1e-06 27.2 1.2 0.0003 21.2 1.2 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_31 PF13560.6 gi|389847718|ref|YP_006349957.1| - 0.01 16.1 0.0 1.7 9.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HAD PF12710.7 gi|389847718|ref|YP_006349957.1| - 0.06 13.7 0.8 0.095 13.1 0.8 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2461 PF09365.10 gi|389847718|ref|YP_006349957.1| - 0.075 13.0 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) Frankia_peptide PF14407.6 gi|389847718|ref|YP_006349957.1| - 0.083 12.9 0.0 0.31 11.1 0.0 2.0 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Amino_oxidase PF01593.24 gi|389847717|ref|YP_006349956.1| - 8.7e-20 71.4 2.6 7.5e-11 42.0 0.7 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|389847717|ref|YP_006349956.1| - 2e-16 59.9 0.4 7.9e-16 58.0 0.3 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389847717|ref|YP_006349956.1| - 8.2e-08 32.2 4.7 1.6e-07 31.2 4.7 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389847717|ref|YP_006349956.1| - 7.2e-05 22.1 0.7 0.00057 19.2 0.9 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|389847717|ref|YP_006349956.1| - 0.00019 21.1 0.4 0.052 13.2 0.2 2.3 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.24 gi|389847717|ref|YP_006349956.1| - 0.00047 19.4 1.5 0.00084 18.5 1.5 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|389847717|ref|YP_006349956.1| - 0.00088 18.1 0.3 0.0015 17.3 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|389847717|ref|YP_006349956.1| - 0.00095 18.5 0.2 0.0022 17.3 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|389847717|ref|YP_006349956.1| - 0.0011 18.4 0.5 0.0015 18.0 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|389847717|ref|YP_006349956.1| - 0.0015 17.8 0.2 0.0023 17.2 0.2 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|389847717|ref|YP_006349956.1| - 0.004 17.7 0.2 0.023 15.3 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389847717|ref|YP_006349956.1| - 0.017 14.2 4.6 0.02 14.0 1.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|389847717|ref|YP_006349956.1| - 0.024 13.9 0.1 0.038 13.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|389847717|ref|YP_006349956.1| - 0.034 14.0 0.1 0.056 13.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|389847717|ref|YP_006349956.1| - 0.047 13.7 0.4 0.1 12.6 0.4 1.5 1 1 0 1 1 1 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|389847717|ref|YP_006349956.1| - 0.053 13.8 0.5 0.49 10.7 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain IlvN PF07991.12 gi|389847717|ref|YP_006349956.1| - 0.081 12.5 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF3784 PF12650.7 gi|389847716|ref|YP_006349955.1| - 2.6e-07 30.7 0.5 3.7e-07 30.2 0.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF3784) DUF4345 PF14248.6 gi|389847716|ref|YP_006349955.1| - 0.014 15.3 4.4 0.02 14.8 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) Phage_holin_3_6 PF07332.11 gi|389847716|ref|YP_006349955.1| - 0.24 11.4 6.5 0.32 11.1 1.0 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III PHP_C PF13263.6 gi|389847715|ref|YP_006349954.1| - 1.3e-21 76.1 0.2 4.3e-21 74.4 0.3 1.9 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|389847715|ref|YP_006349954.1| - 2e-06 28.2 0.0 2.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain AsnC_trans_reg2 PF17805.1 gi|389847714|ref|YP_006349953.1| - 2.7e-43 146.0 0.0 5.3e-22 77.8 0.0 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|389847714|ref|YP_006349953.1| - 1.3e-07 31.4 4.6 0.0016 18.2 0.9 2.9 2 1 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389847714|ref|YP_006349953.1| - 0.022 14.3 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389847714|ref|YP_006349953.1| - 0.097 12.6 0.0 9.9 6.1 0.0 2.5 2 0 0 2 2 2 0 MarR family Glycos_transf_3 PF00591.21 gi|389847713|ref|YP_006349952.1| - 1.9e-33 116.1 0.0 3.2e-33 115.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|389847713|ref|YP_006349952.1| - 1e-07 31.7 1.1 5.1e-07 29.4 0.5 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF455 PF04305.14 gi|389847713|ref|YP_006349952.1| - 0.00061 19.4 0.1 0.0011 18.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF455) MS_channel PF00924.18 gi|389847712|ref|YP_006349951.1| - 4.9e-48 163.4 0.1 4.9e-48 163.4 0.1 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|389847712|ref|YP_006349951.1| - 0.0041 17.1 5.9 0.016 15.1 0.0 2.9 2 1 1 3 3 3 1 Conserved TM helix NeuB PF03102.14 gi|389847712|ref|YP_006349951.1| - 0.026 14.0 0.0 0.096 12.1 0.0 1.8 2 0 0 2 2 2 0 NeuB family Herpes_glycop PF01528.16 gi|389847712|ref|YP_006349951.1| - 0.053 12.4 8.1 0.07 12.0 8.1 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein M Bac_export_2 PF01312.19 gi|389847712|ref|YP_006349951.1| - 1.8 7.7 7.4 2.4 7.3 7.4 1.2 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family HemY_N PF07219.13 gi|389847712|ref|YP_006349951.1| - 4.5 7.5 7.5 6.7 7.0 0.2 2.3 2 0 0 2 2 2 0 HemY protein N-terminus AstE_AspA PF04952.14 gi|662859536|ref|YP_006349950.2| - 2e-37 128.9 0.1 2.3e-37 128.7 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Amidohydro_2 PF04909.14 gi|662859536|ref|YP_006349950.2| - 0.043 13.6 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase Peptidase_M14 PF00246.24 gi|662859536|ref|YP_006349950.2| - 0.13 12.1 0.0 0.58 9.9 0.0 1.9 2 0 0 2 2 2 0 Zinc carboxypeptidase SBF PF01758.16 gi|389847710|ref|YP_006349949.1| - 5.1e-39 134.0 15.6 5.9e-39 133.8 13.5 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family Mem_trans PF03547.18 gi|389847710|ref|YP_006349949.1| - 0.46 8.8 15.9 0.0088 14.5 7.8 2.2 3 1 0 3 3 3 0 Membrane transport protein Pro_isomerase PF00160.21 gi|389847709|ref|YP_006349948.1| - 2.3e-50 170.9 0.0 2.6e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer4_15 PF13459.6 gi|389847708|ref|YP_006349947.1| - 0.0011 19.7 0.9 0.0016 19.1 0.6 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|389847708|ref|YP_006349947.1| - 0.092 13.3 0.2 0.15 12.6 0.2 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I MreB_Mbl PF06723.13 gi|662859535|ref|YP_009034588.1| - 1.3 7.7 5.3 1.4 7.6 5.3 1.0 1 0 0 1 1 1 0 MreB/Mbl protein MCPsignal PF00015.21 gi|662859534|ref|YP_006349946.2| - 6.1e-38 130.3 54.6 5.4e-36 124.0 25.6 4.5 2 2 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|662859534|ref|YP_006349946.2| - 2.1e-11 44.0 20.5 1.2e-09 38.4 0.9 5.6 5 1 0 5 5 4 2 HAMP domain BLOC1_2 PF10046.9 gi|662859534|ref|YP_006349946.2| - 3.4e-07 30.5 12.4 0.043 14.1 0.3 4.3 3 1 1 4 4 4 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 dCache_1 PF02743.18 gi|662859534|ref|YP_006349946.2| - 0.00024 21.0 0.0 0.00024 21.0 0.0 2.7 3 0 0 3 3 3 1 Cache domain AAA_13 PF13166.6 gi|662859534|ref|YP_006349946.2| - 0.0025 16.6 3.3 0.0025 16.6 3.3 2.1 1 1 0 2 2 2 1 AAA domain DUF16 PF01519.16 gi|662859534|ref|YP_006349946.2| - 0.0027 18.2 6.0 1.9 9.0 0.4 3.9 2 1 1 3 3 3 1 Protein of unknown function DUF16 Spc7 PF08317.11 gi|662859534|ref|YP_006349946.2| - 0.0045 15.9 20.7 0.039 12.8 0.8 3.8 1 1 3 4 4 4 3 Spc7 kinetochore protein DUF948 PF06103.11 gi|662859534|ref|YP_006349946.2| - 0.0063 16.7 33.4 0.19 12.0 4.1 5.8 1 1 4 5 5 5 3 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.10 gi|662859534|ref|YP_006349946.2| - 0.022 15.0 1.8 12 6.1 0.0 3.5 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|662859534|ref|YP_006349946.2| - 0.03 14.7 4.1 1.6 9.2 0.2 3.5 2 2 1 3 3 3 0 Snapin/Pallidin Laminin_II PF06009.12 gi|662859534|ref|YP_006349946.2| - 0.05 13.6 26.9 0.42 10.6 4.3 4.7 1 1 2 4 4 4 0 Laminin Domain II DUF1664 PF07889.12 gi|662859534|ref|YP_006349946.2| - 0.067 13.2 19.1 1.3 9.1 1.2 4.8 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|662859534|ref|YP_006349946.2| - 0.07 13.2 13.8 4.2 7.4 0.2 4.7 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus HMMR_N PF15905.5 gi|662859534|ref|YP_006349946.2| - 0.24 10.8 7.6 0.19 11.2 0.4 2.3 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal BORCS7 PF16088.5 gi|662859534|ref|YP_006349946.2| - 0.24 11.7 2.5 0.76 10.1 0.1 2.7 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 7 Exonuc_VII_S PF02609.16 gi|662859534|ref|YP_006349946.2| - 0.32 11.1 2.1 40 4.4 0.0 3.7 4 0 0 4 4 3 0 Exonuclease VII small subunit Kre28 PF17097.5 gi|662859534|ref|YP_006349946.2| - 0.48 9.3 13.4 0.58 9.1 1.7 3.5 2 1 1 4 4 4 0 Spindle pole body component DUF3584 PF12128.8 gi|662859534|ref|YP_006349946.2| - 0.51 7.8 26.4 0.16 9.4 23.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Atg14 PF10186.9 gi|662859534|ref|YP_006349946.2| - 1.2 8.2 2.1 4.3 6.3 0.1 2.1 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 AIP3 PF03915.13 gi|662859534|ref|YP_006349946.2| - 1.3 8.1 10.8 4 6.4 2.0 2.2 1 1 1 2 2 2 0 Actin interacting protein 3 NPV_P10 PF05531.12 gi|662859534|ref|YP_006349946.2| - 1.4 9.5 17.7 3.5 8.1 0.4 4.6 4 1 0 4 4 3 0 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.11 gi|662859534|ref|YP_006349946.2| - 1.5 8.9 6.1 18 5.4 0.5 2.7 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TMPIT PF07851.13 gi|662859534|ref|YP_006349946.2| - 1.7 7.8 6.6 1.2 8.3 0.6 2.8 2 1 0 3 3 3 0 TMPIT-like protein COG2 PF06148.11 gi|662859534|ref|YP_006349946.2| - 1.9 8.6 16.2 1.2 9.2 0.9 4.6 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 YkyA PF10368.9 gi|662859534|ref|YP_006349946.2| - 4.6 6.9 20.4 1.9 8.1 2.2 3.4 2 1 1 3 3 3 0 Putative cell-wall binding lipoprotein FlaC_arch PF05377.11 gi|662859534|ref|YP_006349946.2| - 5.9 7.4 11.8 8.5 6.9 0.2 4.4 4 1 0 4 4 3 0 Flagella accessory protein C (FlaC) Effector_1 PF04518.12 gi|662859534|ref|YP_006349946.2| - 8.7 5.3 10.7 0.55 9.3 1.0 2.5 2 1 0 2 2 2 0 Effector from type III secretion system MIP-T3_C PF17749.1 gi|662859534|ref|YP_006349946.2| - 8.8 6.3 18.9 1.5 8.7 0.2 4.9 4 1 2 6 6 5 0 Microtubule-binding protein MIP-T3 C-terminal region DUF3194 PF11419.8 gi|389847706|ref|YP_006349945.1| - 0.012 15.9 0.2 0.029 14.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3194) AsnC_trans_reg PF01037.21 gi|389847705|ref|YP_006349944.1| - 5.5e-09 35.9 0.1 6.2e-09 35.7 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|389847705|ref|YP_006349944.1| - 0.082 12.9 0.2 0.091 12.7 0.2 1.2 1 0 0 1 1 1 0 GYD domain TrkA_N PF02254.18 gi|389847704|ref|YP_006349943.1| - 7.3e-25 87.5 0.5 1.2e-24 86.8 0.5 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|389847704|ref|YP_006349943.1| - 5.1e-09 35.8 0.9 1.6e-08 34.2 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|389847704|ref|YP_006349943.1| - 3.9e-06 26.6 0.1 9.1e-06 25.4 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|389847704|ref|YP_006349943.1| - 0.00014 22.2 0.4 0.00026 21.4 0.1 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|389847704|ref|YP_006349943.1| - 0.00037 19.8 0.0 0.00055 19.3 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|389847704|ref|YP_006349943.1| - 0.00043 19.6 0.0 0.00049 19.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|389847704|ref|YP_006349943.1| - 0.0016 18.4 0.1 0.004 17.1 0.1 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|389847704|ref|YP_006349943.1| - 0.0022 17.6 0.0 0.0041 16.7 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|389847704|ref|YP_006349943.1| - 0.0036 17.0 0.1 0.0067 16.1 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|389847704|ref|YP_006349943.1| - 0.007 16.6 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389847704|ref|YP_006349943.1| - 0.018 14.6 0.5 0.031 13.8 0.3 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|389847704|ref|YP_006349943.1| - 0.024 15.2 0.1 0.059 13.9 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389847704|ref|YP_006349943.1| - 0.029 13.7 0.1 0.037 13.3 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|389847704|ref|YP_006349943.1| - 0.029 14.6 0.1 0.048 13.9 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|389847704|ref|YP_006349943.1| - 0.034 14.3 0.1 0.65 10.2 0.0 2.5 2 1 1 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|389847704|ref|YP_006349943.1| - 0.037 13.4 0.1 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|389847704|ref|YP_006349943.1| - 0.051 12.7 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain AdoHcyase_NAD PF00670.21 gi|389847704|ref|YP_006349943.1| - 0.11 12.6 0.1 0.31 11.1 0.0 1.9 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AsnC_trans_reg PF01037.21 gi|389847703|ref|YP_006349942.1| - 9e-09 35.2 0.1 1e-08 35.0 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain E1_dh PF00676.20 gi|389847702|ref|YP_006349941.1| - 1.8e-72 243.9 0.0 2.1e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|389847702|ref|YP_006349941.1| - 0.00019 20.8 0.0 0.00033 19.9 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|389847702|ref|YP_006349941.1| - 0.0035 17.1 1.8 0.025 14.4 0.4 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ferritin PF00210.24 gi|389847702|ref|YP_006349941.1| - 0.027 14.4 0.3 0.049 13.6 0.3 1.4 1 0 0 1 1 1 0 Ferritin-like domain Phage_connect_1 PF05135.13 gi|389847702|ref|YP_006349941.1| - 0.059 13.9 0.0 0.23 12.0 0.0 1.9 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein TPR_10 PF13374.6 gi|389847702|ref|YP_006349941.1| - 7.3 6.6 6.4 22 5.1 0.3 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat YqhR PF11085.8 gi|389847701|ref|YP_006349940.1| - 0.43 10.5 6.4 0.48 10.3 6.4 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR ABC2_membrane_3 PF12698.7 gi|389847701|ref|YP_006349940.1| - 2 7.4 10.1 2.2 7.3 10.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Thymidylate_kin PF02223.17 gi|389847700|ref|YP_006349939.1| - 4.8e-36 124.2 0.0 5.6e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|389847700|ref|YP_006349939.1| - 1.1e-05 25.6 0.0 3.5e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|389847700|ref|YP_006349939.1| - 7.8e-05 22.6 0.0 0.0002 21.3 0.0 1.6 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|389847700|ref|YP_006349939.1| - 0.0017 18.9 0.0 0.0067 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|389847700|ref|YP_006349939.1| - 0.011 16.0 0.1 0.014 15.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|389847700|ref|YP_006349939.1| - 0.14 12.6 0.0 20 5.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain NAD_binding_10 PF13460.6 gi|389847698|ref|YP_006349937.1| - 2.4e-29 102.5 0.0 3.6e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|389847698|ref|YP_006349937.1| - 1.1e-20 74.2 0.0 3.7e-20 72.4 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389847698|ref|YP_006349937.1| - 2.6e-14 52.9 0.0 4e-12 45.7 0.0 2.2 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|389847698|ref|YP_006349937.1| - 1.3e-13 50.7 0.0 3.8e-07 29.5 0.0 2.4 2 1 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.13 gi|389847698|ref|YP_006349937.1| - 2.3e-10 40.4 0.0 3.3e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|389847698|ref|YP_006349937.1| - 3.5e-07 29.9 0.0 1.2e-06 28.2 0.0 1.9 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|389847698|ref|YP_006349937.1| - 5.2e-06 25.8 0.0 0.041 13.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|389847698|ref|YP_006349937.1| - 2.8e-05 23.4 0.2 0.00073 18.8 0.2 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|389847698|ref|YP_006349937.1| - 0.0036 16.8 0.0 0.0059 16.1 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|389847698|ref|YP_006349937.1| - 0.018 15.3 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|389847698|ref|YP_006349937.1| - 0.022 14.7 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 KR domain NAD_binding_2 PF03446.15 gi|389847698|ref|YP_006349937.1| - 0.035 14.3 0.0 0.088 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.6 gi|389847698|ref|YP_006349937.1| - 0.06 13.3 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389847698|ref|YP_006349937.1| - 0.074 13.5 0.1 0.17 12.3 0.1 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Pyr_redox PF00070.27 gi|389847698|ref|YP_006349937.1| - 0.11 13.1 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|389847698|ref|YP_006349937.1| - 0.18 12.4 0.0 0.4 11.3 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Tubulin PF00091.25 gi|662859533|ref|YP_006349936.2| - 5.9e-27 95.2 0.0 1.2e-26 94.2 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|662859533|ref|YP_006349936.2| - 0.0089 15.3 0.1 0.015 14.5 0.1 1.5 1 0 0 1 1 1 1 Tubulin like DUF1771 PF08590.10 gi|389847696|ref|YP_006349935.1| - 0.0083 16.5 1.6 0.0083 16.5 1.6 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1771) DUF4398 PF14346.6 gi|389847696|ref|YP_006349935.1| - 0.062 13.9 5.2 0.18 12.5 5.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) SKG6 PF08693.10 gi|389847696|ref|YP_006349935.1| - 0.099 12.1 0.2 0.2 11.1 0.2 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain PTS_IIA PF02255.16 gi|389847696|ref|YP_006349935.1| - 0.38 10.8 2.6 0.69 10.0 1.9 1.8 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit Mannosidase_ig PF17786.1 gi|389847696|ref|YP_006349935.1| - 0.47 11.1 3.5 0.26 11.9 1.2 1.9 2 1 0 2 2 2 0 Mannosidase Ig/CBM-like domain CofC PF01983.16 gi|389847695|ref|YP_006349934.1| - 1.7e-37 128.7 0.0 2e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|389847695|ref|YP_006349934.1| - 0.013 15.8 3.2 0.022 15.1 3.0 1.5 1 1 0 1 1 1 0 MobA-like NTP transferase domain Radical_SAM PF04055.21 gi|389847694|ref|YP_006349933.1| - 2.6e-16 60.5 0.0 5.5e-16 59.4 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily YdjM PF04307.14 gi|389847693|ref|YP_006349932.1| - 0.11 11.8 15.4 1.5 8.1 15.4 2.3 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase Dirigent PF03018.14 gi|389847692|ref|YP_006349931.1| - 0.08 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Dirigent-like protein YdjM PF04307.14 gi|389847691|ref|YP_006349930.1| - 4.8e-07 29.2 15.5 4.7e-06 26.0 15.5 2.1 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Radical_SAM PF04055.21 gi|389847690|ref|YP_006349929.1| - 1.6e-12 48.1 0.0 3.3e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF5518 PF17647.1 gi|389847689|ref|YP_006349928.1| - 1.6e-15 57.3 29.5 1.9e-15 57.1 29.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF2070 PF09843.9 gi|389847689|ref|YP_006349928.1| - 0.038 12.3 3.2 0.043 12.1 3.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ApbA PF02558.16 gi|389847689|ref|YP_006349928.1| - 1.3 8.6 3.1 0.36 10.5 0.3 1.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Bacteriocin_IIc PF10439.9 gi|389847689|ref|YP_006349928.1| - 8 6.7 23.1 0.43 10.7 3.4 3.2 2 1 1 3 3 3 0 Bacteriocin class II with double-glycine leader peptide SIR2 PF02146.17 gi|389847688|ref|YP_006349927.1| - 2.3e-47 161.2 0.0 2.7e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|389847688|ref|YP_006349927.1| - 0.00025 20.8 0.0 0.0021 17.8 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.10 gi|389847688|ref|YP_006349927.1| - 0.3 11.2 1.5 0.61 10.2 1.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain SAICAR_synt PF01259.18 gi|389847687|ref|YP_006349926.1| - 1.5e-22 80.5 0.0 3.4e-22 79.3 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase PQQ_2 PF13360.6 gi|389847686|ref|YP_006349925.1| - 3.5e-36 125.0 14.8 6e-17 62.0 1.5 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|389847686|ref|YP_006349925.1| - 9.5e-21 72.7 4.7 0.0025 17.7 0.0 6.4 6 0 0 6 6 6 5 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389847686|ref|YP_006349925.1| - 2.5e-15 56.4 27.0 0.024 15.1 0.4 7.6 7 0 0 7 7 7 6 PQQ-like domain Formyl_trans_N PF00551.19 gi|389847685|ref|YP_006349924.1| - 9.5e-41 139.5 0.0 1.6e-40 138.8 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|389847685|ref|YP_006349924.1| - 3.7e-07 30.0 0.2 8.6e-07 28.9 0.2 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|389847685|ref|YP_006349924.1| - 3e-06 26.9 0.3 1.1e-05 25.1 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|389847685|ref|YP_006349924.1| - 0.00085 19.9 0.1 0.0024 18.4 0.1 1.7 1 0 0 1 1 1 1 ACT domain GntP_permease PF02447.16 gi|389847684|ref|YP_006349923.1| - 1.6e-94 317.1 31.6 1.8e-94 316.9 31.6 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|389847684|ref|YP_006349923.1| - 2e-14 53.5 32.1 2e-14 53.5 32.1 1.8 2 0 0 2 2 2 1 Citrate transporter DUF4124 PF13511.6 gi|389847684|ref|YP_006349923.1| - 0.58 10.5 3.4 1.4 9.3 3.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4124) PurS PF02700.14 gi|662859532|ref|YP_006349922.2| - 2.5e-24 85.2 0.0 2.8e-24 85.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.24 gi|662859532|ref|YP_006349922.2| - 0.031 13.7 0.1 0.035 13.5 0.1 1.0 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GATase_5 PF13507.6 gi|389847682|ref|YP_006349921.1| - 2.7e-44 151.2 0.0 3.3e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|389847682|ref|YP_006349921.1| - 5.5e-07 29.6 0.0 7.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|389847682|ref|YP_006349921.1| - 0.00016 21.5 0.0 0.00019 21.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|389847682|ref|YP_006349921.1| - 0.00072 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|389847682|ref|YP_006349921.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 SH3_3 PF08239.11 gi|389847681|ref|YP_006349920.1| - 0.094 13.0 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain Radical_SAM PF04055.21 gi|389847680|ref|YP_006349919.1| - 0.003 17.9 0.4 0.0067 16.8 0.4 1.6 1 1 0 1 1 1 1 Radical SAM superfamily AFOR_C PF01314.18 gi|389847678|ref|YP_006349917.1| - 2.2e-117 392.3 1.3 2.9e-117 391.9 1.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|389847678|ref|YP_006349917.1| - 4e-72 242.2 0.1 5.9e-72 241.7 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AzlD PF05437.12 gi|389847677|ref|YP_006349916.1| - 8.5e-25 86.8 8.0 9.5e-25 86.7 8.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.14 gi|389847676|ref|YP_006349915.1| - 4.1e-36 124.4 10.4 4.1e-36 124.4 10.4 2.0 2 0 0 2 2 2 1 AzlC protein ThiS PF02597.20 gi|389847672|ref|YP_006349911.1| - 1.8e-17 63.8 0.1 2e-17 63.6 0.1 1.0 1 0 0 1 1 1 1 ThiS family HalOD1 PF18545.1 gi|389847671|ref|YP_006349910.1| - 8.9e-16 57.9 0.2 1.7e-15 57.0 0.0 1.5 2 0 0 2 2 2 1 Halobacterial output domain 1 Nup96 PF12110.8 gi|389847671|ref|YP_006349910.1| - 0.071 12.2 0.0 0.085 12.0 0.0 1.1 1 0 0 1 1 1 0 Nuclear protein 96 AAA_23 PF13476.6 gi|389847670|ref|YP_006349909.1| - 9.8e-11 42.5 5.4 9.8e-11 42.5 5.4 4.5 1 1 1 2 2 1 1 AAA domain Spc7 PF08317.11 gi|389847670|ref|YP_006349909.1| - 1.6e-09 37.1 62.4 0.00063 18.7 18.3 4.2 2 2 2 4 4 4 4 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|389847670|ref|YP_006349909.1| - 1.3e-06 28.4 63.2 0.096 12.8 13.8 5.5 2 2 1 4 4 4 4 TPR/MLP1/MLP2-like protein DUF4407 PF14362.6 gi|389847670|ref|YP_006349909.1| - 2.1e-06 27.3 46.2 0.0011 18.4 7.5 3.2 1 1 2 3 3 3 3 Domain of unknown function (DUF4407) AAA_13 PF13166.6 gi|389847670|ref|YP_006349909.1| - 5.6e-06 25.3 30.1 0.0047 15.7 8.4 2.4 2 0 0 2 2 2 2 AAA domain DUF1664 PF07889.12 gi|389847670|ref|YP_006349909.1| - 8.2e-05 22.6 41.5 0.014 15.5 4.9 6.0 2 2 5 7 7 7 3 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.9 gi|389847670|ref|YP_006349909.1| - 0.00039 20.4 66.6 0.038 14.0 9.4 4.7 2 2 2 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HemX PF04375.14 gi|389847670|ref|YP_006349909.1| - 0.00074 18.9 45.4 0.084 12.1 11.5 4.2 2 2 2 4 4 4 2 HemX, putative uroporphyrinogen-III C-methyltransferase FlaC_arch PF05377.11 gi|389847670|ref|YP_006349909.1| - 0.001 19.4 41.1 0.25 11.8 2.4 8.4 5 3 3 8 8 8 2 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|389847670|ref|YP_006349909.1| - 0.0014 18.9 3.9 0.0014 18.9 3.9 5.3 2 2 2 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.6 gi|389847670|ref|YP_006349909.1| - 0.0023 17.3 53.4 0.054 12.8 15.4 4.3 2 2 0 3 3 3 2 Growth-arrest specific micro-tubule binding DUF5082 PF16888.5 gi|389847670|ref|YP_006349909.1| - 0.0026 18.0 44.8 0.4 11.0 7.9 5.4 2 2 2 4 4 4 2 Domain of unknown function (DUF5082) DUF3584 PF12128.8 gi|389847670|ref|YP_006349909.1| - 0.0066 14.0 59.9 0.086 10.3 10.3 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) ERM PF00769.19 gi|389847670|ref|YP_006349909.1| - 0.0066 16.3 57.7 0.099 12.4 29.2 2.6 1 1 1 2 2 2 2 Ezrin/radixin/moesin family Fzo_mitofusin PF04799.13 gi|389847670|ref|YP_006349909.1| - 0.014 15.0 36.8 0.024 14.2 4.9 5.7 2 2 3 6 6 6 0 fzo-like conserved region Atg14 PF10186.9 gi|389847670|ref|YP_006349909.1| - 0.028 13.5 49.7 0.075 12.1 3.4 4.2 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlxA PF14282.6 gi|389847670|ref|YP_006349909.1| - 0.036 14.0 0.6 0.036 14.0 0.6 5.0 4 1 1 5 5 5 0 FlxA-like protein ABC_tran_CTD PF16326.5 gi|389847670|ref|YP_006349909.1| - 0.045 14.0 62.6 1.3 9.4 12.6 6.8 4 3 2 6 6 6 0 ABC transporter C-terminal domain HsbA PF12296.8 gi|389847670|ref|YP_006349909.1| - 0.051 14.0 3.3 15 6.0 0.1 4.2 3 2 1 4 4 4 0 Hydrophobic surface binding protein A DHR10 PF18595.1 gi|389847670|ref|YP_006349909.1| - 0.063 13.3 76.2 0.04 14.0 7.5 5.4 2 2 2 4 4 4 0 Designed helical repeat protein 10 domain Spectrin PF00435.21 gi|389847670|ref|YP_006349909.1| - 0.067 13.7 44.2 3.2 8.3 8.1 4.9 3 2 1 4 4 4 0 Spectrin repeat DUF4041 PF13250.6 gi|389847670|ref|YP_006349909.1| - 0.072 13.0 0.6 23 4.9 0.0 3.4 3 0 0 3 3 2 0 Domain of unknown function (DUF4041) Seryl_tRNA_N PF02403.22 gi|389847670|ref|YP_006349909.1| - 0.08 13.2 47.2 0.48 10.7 2.4 5.6 2 2 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain HSBP1 PF06825.12 gi|389847670|ref|YP_006349909.1| - 0.084 12.8 0.3 0.084 12.8 0.3 6.0 5 2 0 5 5 5 0 Heat shock factor binding protein 1 Golgin_A5 PF09787.9 gi|389847670|ref|YP_006349909.1| - 0.095 12.1 66.3 0.16 11.4 3.0 3.7 1 1 1 3 3 3 0 Golgin subfamily A member 5 KfrA_N PF11740.8 gi|389847670|ref|YP_006349909.1| - 0.1 13.3 0.3 0.1 13.3 0.3 7.7 2 2 3 5 5 4 0 Plasmid replication region DNA-binding N-term FapA PF03961.13 gi|389847670|ref|YP_006349909.1| - 0.22 10.1 36.9 0.48 9.0 8.9 4.0 1 1 3 4 4 4 0 Flagellar Assembly Protein A EzrA PF06160.12 gi|389847670|ref|YP_006349909.1| - 0.23 9.6 45.1 0.7 8.0 18.4 4.2 2 2 0 2 2 2 0 Septation ring formation regulator, EzrA DUF4201 PF13870.6 gi|389847670|ref|YP_006349909.1| - 0.25 11.1 48.2 0.34 10.6 17.5 4.2 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) TACC_C PF05010.14 gi|389847670|ref|YP_006349909.1| - 0.47 10.2 44.7 0.29 10.9 11.2 3.4 2 2 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Baculo_PEP_C PF04513.12 gi|389847670|ref|YP_006349909.1| - 0.49 10.4 28.8 2.9 7.9 4.8 4.9 2 2 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6_N PF17675.1 gi|389847670|ref|YP_006349909.1| - 0.6 10.6 77.7 6.1 7.4 8.0 5.6 1 1 4 5 5 5 0 Apg6 coiled-coil region Prefoldin PF02996.17 gi|389847670|ref|YP_006349909.1| - 0.79 9.6 46.7 1 9.3 0.7 7.8 3 3 4 8 8 8 0 Prefoldin subunit DUF4988 PF16378.5 gi|389847670|ref|YP_006349909.1| - 0.85 9.3 11.7 4 7.1 0.2 4.6 4 1 1 5 5 5 0 Domain of unknown function Fib_alpha PF08702.10 gi|389847670|ref|YP_006349909.1| - 1.1 9.4 33.7 0.33 11.1 0.3 4.4 3 1 0 4 4 4 0 Fibrinogen alpha/beta chain family CCDC144C PF14915.6 gi|389847670|ref|YP_006349909.1| - 1.2 8.2 46.4 0.29 10.2 20.6 2.5 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region Phage_GP20 PF06810.11 gi|389847670|ref|YP_006349909.1| - 1.8 8.4 44.6 3.1 7.6 8.1 6.0 2 2 3 6 6 6 0 Phage minor structural protein GP20 PspA_IM30 PF04012.12 gi|389847670|ref|YP_006349909.1| - 2 7.9 55.8 0.43 10.1 16.9 4.6 2 2 2 4 4 4 0 PspA/IM30 family NPV_P10 PF05531.12 gi|389847670|ref|YP_006349909.1| - 2.4 8.7 32.9 0.39 11.2 2.3 6.0 2 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Leu_zip PF15294.6 gi|389847670|ref|YP_006349909.1| - 2.6 7.5 43.9 0.6 9.6 16.5 3.2 2 1 0 2 2 2 0 Leucine zipper AAA_15 PF13175.6 gi|389847670|ref|YP_006349909.1| - 3.3 7.3 0.0 3.3 7.3 0.0 3.5 2 1 0 2 2 1 0 AAA ATPase domain WXG100 PF06013.12 gi|389847670|ref|YP_006349909.1| - 3.5 7.9 30.1 0.57 10.4 4.6 6.9 2 2 4 7 7 7 0 Proteins of 100 residues with WXG MAD PF05557.13 gi|389847670|ref|YP_006349909.1| - 3.8 5.8 57.5 2 6.7 21.4 3.0 2 1 0 2 2 2 0 Mitotic checkpoint protein PknG_rubred PF16919.5 gi|389847670|ref|YP_006349909.1| - 4.5 7.4 7.0 1.1 9.4 0.1 3.0 3 1 0 3 3 2 0 Protein kinase G rubredoxin domain OmpH PF03938.14 gi|389847670|ref|YP_006349909.1| - 4.6 7.6 50.9 2.1 8.7 12.7 4.5 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) ZapB PF06005.12 gi|389847670|ref|YP_006349909.1| - 5.2 7.6 67.7 3.7 8.1 0.5 7.3 2 2 3 5 5 5 0 Cell division protein ZapB DUF3450 PF11932.8 gi|389847670|ref|YP_006349909.1| - 5.2 6.3 58.2 7.1 5.9 11.9 5.6 3 2 1 4 4 4 0 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|389847670|ref|YP_006349909.1| - 5.9 6.9 38.9 1.5 8.8 7.5 4.8 2 2 1 4 4 4 0 Laminin Domain II FliD_N PF02465.18 gi|389847670|ref|YP_006349909.1| - 8.3 7.2 25.8 3 8.6 1.8 5.8 1 1 2 4 4 4 0 Flagellar hook-associated protein 2 N-terminus Nup88 PF10168.9 gi|389847670|ref|YP_006349909.1| - 9.2 3.9 33.8 0.98 7.2 12.5 2.3 2 0 0 2 2 2 0 Nuclear pore component HEM4 PF02602.15 gi|389847669|ref|YP_006349908.1| - 0.013 14.9 0.2 0.051 12.9 0.2 1.8 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD DSBA PF01323.20 gi|389847669|ref|YP_006349908.1| - 0.14 11.9 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 DSBA-like thioredoxin domain DUF1616 PF07760.11 gi|662859531|ref|YP_006349907.2| - 1.6e-117 392.1 0.5 2e-117 391.8 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) CBM60 PF16841.5 gi|662859530|ref|YP_006349906.2| - 0.00084 19.7 2.6 0.035 14.5 0.5 3.4 3 0 0 3 3 3 1 Ca-dependent carbohydrate-binding module xylan-binding DUF4129 PF13559.6 gi|662859530|ref|YP_006349906.2| - 0.0014 18.9 3.2 0.0014 18.9 3.2 3.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) MG4 PF17789.1 gi|662859530|ref|YP_006349906.2| - 0.0052 16.9 4.7 0.03 14.5 0.3 3.3 3 0 0 3 3 3 1 Macroglobulin domain MG4 CarbopepD_reg_2 PF13715.6 gi|662859530|ref|YP_006349906.2| - 0.022 14.7 2.8 0.41 10.7 0.2 3.0 2 0 0 2 2 2 0 CarboxypepD_reg-like domain HEPN PF05168.14 gi|662859530|ref|YP_006349906.2| - 0.073 13.2 2.8 0.23 11.6 0.2 2.8 2 1 0 2 2 2 0 HEPN domain DUF1759 PF03564.15 gi|662859530|ref|YP_006349906.2| - 0.093 12.7 0.3 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) Mycobact_memb PF05423.13 gi|662859530|ref|YP_006349906.2| - 0.18 11.7 0.1 0.18 11.7 0.1 2.1 2 0 0 2 2 2 0 Mycobacterium membrane protein UPF0242 PF06785.11 gi|662859530|ref|YP_006349906.2| - 0.22 11.6 1.8 0.36 10.9 1.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CR6_interact PF10147.9 gi|662859530|ref|YP_006349906.2| - 0.34 10.6 2.1 0.57 9.9 2.1 1.2 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 V_ATPase_I PF01496.19 gi|662859530|ref|YP_006349906.2| - 2.3 6.0 3.1 3.3 5.5 3.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF58 PF01882.18 gi|389847666|ref|YP_006349905.1| - 1.2e-17 63.9 0.0 4.6e-17 62.1 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 HalOD1 PF18545.1 gi|389847665|ref|YP_006349904.1| - 0.064 13.5 0.6 9.2 6.6 0.1 2.5 2 0 0 2 2 2 0 Halobacterial output domain 1 DUF2721 PF11026.8 gi|389847665|ref|YP_006349904.1| - 0.13 12.2 0.1 0.2 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) AAA_3 PF07726.11 gi|389847664|ref|YP_006349903.1| - 8e-62 206.9 0.1 1.6e-61 205.9 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|389847664|ref|YP_006349903.1| - 2.7e-22 78.4 0.5 4.9e-22 77.5 0.5 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|389847664|ref|YP_006349903.1| - 1.1e-16 61.0 0.0 2e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|389847664|ref|YP_006349903.1| - 6.4e-08 32.0 0.0 9.6e-08 31.4 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|389847664|ref|YP_006349903.1| - 1.2e-07 31.4 0.1 0.0049 16.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|389847664|ref|YP_006349903.1| - 6e-06 26.1 0.2 8e-05 22.4 0.1 2.5 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|389847664|ref|YP_006349903.1| - 1.6e-05 24.7 0.0 0.00019 21.2 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|389847664|ref|YP_006349903.1| - 4.8e-05 23.8 0.0 0.00015 22.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|389847664|ref|YP_006349903.1| - 0.006 17.0 0.0 0.028 14.8 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|389847664|ref|YP_006349903.1| - 0.073 13.2 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF4350 PF14258.6 gi|389847663|ref|YP_006349902.1| - 1.9e-08 34.6 0.1 1.9e-08 34.6 0.1 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|389847663|ref|YP_006349902.1| - 0.036 13.5 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.10 gi|389847663|ref|YP_006349902.1| - 0.074 12.5 0.0 2 7.8 0.0 2.1 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain DAGK_prokar PF01219.19 gi|389847662|ref|YP_006349901.1| - 0.026 14.4 1.3 0.038 13.8 1.3 1.2 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase MacB_PCD PF12704.7 gi|389847661|ref|YP_006349900.1| - 2e-16 60.9 7.5 2e-16 60.9 7.5 1.5 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389847661|ref|YP_006349900.1| - 4.2e-07 30.3 6.7 4.2e-07 30.3 6.7 2.8 3 0 0 3 3 3 1 FtsX-like permease family FtsX PF02687.21 gi|389847660|ref|YP_006349899.1| - 4.3e-06 27.1 16.9 3.3e-05 24.3 5.4 3.1 3 0 0 3 3 3 2 FtsX-like permease family Amnionless PF14828.6 gi|389847660|ref|YP_006349899.1| - 8.8 5.0 6.3 1.7 7.4 0.7 2.2 2 1 1 3 3 3 0 Amnionless ABC_tran PF00005.27 gi|389847659|ref|YP_006349898.1| - 1.1e-34 119.9 0.0 1.5e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|389847659|ref|YP_006349898.1| - 7e-09 35.5 0.0 2.2e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|389847659|ref|YP_006349898.1| - 4.3e-06 26.8 0.1 0.05 13.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389847659|ref|YP_006349898.1| - 1.7e-05 24.5 0.2 2.8e-05 23.7 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389847659|ref|YP_006349898.1| - 7.3e-05 23.2 1.2 0.00012 22.5 1.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|389847659|ref|YP_006349898.1| - 0.00054 20.3 0.2 0.0039 17.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389847659|ref|YP_006349898.1| - 0.001 19.3 0.4 0.0036 17.5 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|389847659|ref|YP_006349898.1| - 0.0013 18.5 2.1 0.0092 15.7 2.1 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389847659|ref|YP_006349898.1| - 0.0018 18.2 0.0 0.0036 17.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|389847659|ref|YP_006349898.1| - 0.0024 18.4 0.0 0.022 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|389847659|ref|YP_006349898.1| - 0.0027 18.0 0.1 0.0079 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|389847659|ref|YP_006349898.1| - 0.004 16.5 0.0 0.0078 15.6 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_25 PF13481.6 gi|389847659|ref|YP_006349898.1| - 0.0068 16.0 0.6 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|389847659|ref|YP_006349898.1| - 0.0074 16.0 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|389847659|ref|YP_006349898.1| - 0.01 15.1 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TIR-like PF10137.9 gi|389847659|ref|YP_006349898.1| - 0.017 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain PIF1 PF05970.14 gi|389847659|ref|YP_006349898.1| - 0.027 13.6 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase NTPase_1 PF03266.15 gi|389847659|ref|YP_006349898.1| - 0.037 14.0 0.1 0.65 9.9 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.6 gi|389847659|ref|YP_006349898.1| - 0.04 14.4 0.0 0.059 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|389847659|ref|YP_006349898.1| - 0.041 13.6 0.1 0.074 12.8 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase NACHT PF05729.12 gi|389847659|ref|YP_006349898.1| - 0.048 13.6 0.0 0.092 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|389847659|ref|YP_006349898.1| - 0.053 13.6 0.1 0.12 12.4 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|389847659|ref|YP_006349898.1| - 0.093 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|389847659|ref|YP_006349898.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain CbiA PF01656.23 gi|389847659|ref|YP_006349898.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|389847659|ref|YP_006349898.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Spore_YhcN_YlaJ PF09580.10 gi|389847659|ref|YP_006349898.1| - 0.53 10.3 4.0 0.89 9.6 4.0 1.3 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CARDB PF07705.11 gi|662859528|ref|YP_006349896.2| - 1.9e-13 50.5 22.8 7.5e-08 32.6 3.9 14.8 12 3 2 15 15 14 5 CARDB Y_Y_Y PF07495.13 gi|662859528|ref|YP_006349896.2| - 2.1e-09 37.2 9.8 0.0042 17.0 0.1 8.9 9 0 0 9 9 9 2 Y_Y_Y domain Big_3_3 PF13750.6 gi|662859528|ref|YP_006349896.2| - 1.7e-08 34.3 63.7 0.00029 20.5 5.9 11.0 9 3 1 10 10 10 6 Bacterial Ig-like domain (group 3) FlgD_ig PF13860.6 gi|662859528|ref|YP_006349896.2| - 4e-08 33.0 3.8 4e-08 33.0 3.8 11.9 12 0 0 12 12 11 1 FlgD Ig-like domain Big_7 PF17957.1 gi|662859528|ref|YP_006349896.2| - 5.8e-07 30.2 40.4 6.3e-06 26.9 9.9 20.7 18 4 5 23 23 15 4 Bacterial Ig domain PGF-CTERM PF18204.1 gi|662859528|ref|YP_006349896.2| - 7.3e-06 25.8 8.5 1.5e-05 24.8 8.5 1.5 1 0 0 1 1 1 1 PGF-CTERM motif Fn3-like PF14310.6 gi|662859528|ref|YP_006349896.2| - 0.0029 17.7 7.4 20 5.4 0.0 7.0 7 0 0 7 7 5 0 Fibronectin type III-like domain DUF4625 PF15418.6 gi|662859528|ref|YP_006349896.2| - 0.0041 17.4 32.1 0.39 11.0 1.0 10.2 8 2 2 11 11 11 1 Domain of unknown function (DUF4625) YscW PF09619.10 gi|662859528|ref|YP_006349896.2| - 0.011 16.1 5.3 2.5 8.5 0.0 5.2 5 0 0 5 5 4 0 Type III secretion system lipoprotein chaperone (YscW) YtkA PF13115.6 gi|662859528|ref|YP_006349896.2| - 0.024 15.3 0.5 0.024 15.3 0.5 8.3 8 2 2 10 10 8 0 YtkA-like SoxY PF13501.6 gi|662859528|ref|YP_006349896.2| - 0.035 14.3 0.1 0.035 14.3 0.1 5.8 8 0 0 8 8 6 0 Sulfur oxidation protein SoxY TcfC PF16967.5 gi|662859528|ref|YP_006349896.2| - 0.043 13.3 1.5 35 4.0 0.0 4.8 6 0 0 6 6 6 0 E-set like domain HupF_HypC PF01455.18 gi|662859528|ref|YP_006349896.2| - 0.14 12.4 0.1 0.66 10.2 0.1 2.2 1 0 0 1 1 1 0 HupF/HypC family Csm4_C PF17953.1 gi|662859528|ref|YP_006349896.2| - 0.17 11.7 0.0 0.48 10.3 0.0 1.7 1 0 0 1 1 1 0 CRISPR Csm4 C-terminal domain E1_DerP2_DerF2 PF02221.15 gi|662859528|ref|YP_006349896.2| - 0.53 10.7 11.0 5.9 7.3 0.5 5.8 6 0 0 6 6 3 0 ML domain TPP1 PF10341.9 gi|662859528|ref|YP_006349896.2| - 0.63 10.0 5.8 2 8.4 0.1 3.3 3 1 1 4 4 3 0 Shelterin complex subunit, TPP1/ACD DUF4175 PF13779.6 gi|662859528|ref|YP_006349896.2| - 2.1 6.2 4.9 13 3.6 0.0 3.6 3 1 1 4 4 4 0 Domain of unknown function (DUF4175) ACT_4 PF13291.6 gi|662859528|ref|YP_006349896.2| - 2.3 8.9 4.5 5.7 7.6 0.3 4.0 3 0 0 3 3 3 0 ACT domain HepII_C PF18675.1 gi|662859528|ref|YP_006349896.2| - 2.5 8.3 14.7 0.085 13.0 0.1 5.4 5 0 0 5 5 4 0 Heparinase II C-terminal domain PTA_PTB PF01515.19 gi|389847655|ref|YP_006349894.1| - 6e-94 314.9 0.0 8.1e-94 314.5 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|389847655|ref|YP_006349894.1| - 3.1e-28 98.8 0.2 1.7e-25 89.9 0.2 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|389847655|ref|YP_006349894.1| - 3.6e-20 72.3 0.2 9.3e-20 71.0 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF2732 PF10809.8 gi|389847655|ref|YP_006349894.1| - 0.018 14.9 0.4 0.18 11.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2732) BPD_transp_1 PF00528.22 gi|662859526|ref|YP_006349893.2| - 1.5e-16 60.7 14.6 1.5e-16 60.7 14.6 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|389847653|ref|YP_006349892.1| - 3e-22 79.5 4.1 4e-22 79.1 4.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein NTP_transf_3 PF12804.7 gi|389847652|ref|YP_006349891.1| - 1.7e-32 113.0 2.8 2.1e-32 112.7 2.8 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|389847652|ref|YP_006349891.1| - 0.0088 15.8 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2064 PF09837.9 gi|389847652|ref|YP_006349891.1| - 0.012 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Oxidored_molyb PF00174.19 gi|662859525|ref|YP_006349890.2| - 2.6e-16 59.7 0.0 8.5e-16 58.0 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Nitrate_red_del PF02613.15 gi|389847649|ref|YP_006349888.1| - 2.8e-30 105.1 0.0 2e-29 102.3 0.0 1.9 1 1 1 2 2 2 1 Nitrate reductase delta subunit NrfD PF03916.14 gi|389847648|ref|YP_006349887.1| - 6.1e-71 239.6 19.8 6.1e-71 239.6 19.8 1.5 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Rio2_N PF09202.11 gi|389847648|ref|YP_006349887.1| - 0.16 12.2 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal SPC25 PF06703.11 gi|389847648|ref|YP_006349887.1| - 1.4 8.7 2.8 8.4 6.2 0.3 2.8 3 0 0 3 3 3 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF2976 PF11190.8 gi|389847648|ref|YP_006349887.1| - 8.8 6.2 10.2 0.11 12.3 0.5 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2976) Fer4_11 PF13247.6 gi|389847647|ref|YP_006349886.1| - 1.3e-21 76.5 18.1 1.2e-14 54.2 6.1 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389847647|ref|YP_006349886.1| - 5.3e-19 68.5 25.4 8.8e-09 35.8 9.8 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389847647|ref|YP_006349886.1| - 3.9e-15 55.7 24.4 3.2e-09 36.7 7.6 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|389847647|ref|YP_006349886.1| - 1.7e-14 53.2 34.5 5.3e-08 32.6 4.4 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|389847647|ref|YP_006349886.1| - 2.3e-13 49.3 41.5 1.4e-08 34.2 4.3 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|389847647|ref|YP_006349886.1| - 3e-11 43.3 24.8 1.3e-06 28.5 7.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|389847647|ref|YP_006349886.1| - 2.9e-10 39.6 32.6 1.7e-05 24.6 2.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|389847647|ref|YP_006349886.1| - 4.7e-09 36.6 21.1 0.00032 21.1 6.9 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|389847647|ref|YP_006349886.1| - 2.4e-06 28.1 43.7 0.019 15.9 7.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|389847647|ref|YP_006349886.1| - 8.9e-06 26.2 23.2 0.019 15.5 7.5 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389847647|ref|YP_006349886.1| - 1.5e-05 25.2 33.9 0.0013 19.1 3.3 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|389847647|ref|YP_006349886.1| - 5.5e-05 23.2 31.6 0.002 18.2 1.7 4.0 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389847647|ref|YP_006349886.1| - 0.00051 20.9 26.9 0.11 13.5 4.4 4.4 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|389847647|ref|YP_006349886.1| - 0.011 16.4 0.3 0.011 16.4 0.3 3.7 3 1 0 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|389847647|ref|YP_006349886.1| - 0.023 15.2 1.0 0.023 15.2 1.0 3.8 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|389847647|ref|YP_006349886.1| - 0.36 10.6 24.6 0.76 9.6 4.3 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|389847647|ref|YP_006349886.1| - 0.98 9.6 17.9 2 8.6 8.8 3.5 3 1 0 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|389847646|ref|YP_006349885.1| - 9.1e-54 183.0 0.0 1.3e-53 182.5 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|389847646|ref|YP_006349885.1| - 1.4e-26 92.7 0.0 2.9e-26 91.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|389847646|ref|YP_006349885.1| - 1.5e-11 44.1 0.6 3e-11 43.1 0.6 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|389847646|ref|YP_006349885.1| - 0.015 15.1 4.7 0.031 14.1 4.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ferredoxin_N PF16947.5 gi|389847645|ref|YP_006349884.1| - 1e-32 112.0 0.5 1.2e-32 111.8 0.5 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding zf-C2H2_3 PF13878.6 gi|389847645|ref|YP_006349884.1| - 0.16 11.8 0.2 0.23 11.3 0.2 1.2 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO Molybdopterin PF00384.22 gi|389847644|ref|YP_006349883.1| - 3.6e-56 191.0 0.0 9.2e-56 189.6 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|389847644|ref|YP_006349883.1| - 7e-25 87.2 0.0 1.6e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|389847644|ref|YP_006349883.1| - 9.7e-12 44.7 0.2 2.6e-11 43.3 0.2 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|389847644|ref|YP_006349883.1| - 0.015 15.1 4.7 0.031 14.1 4.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4440 PF14534.6 gi|389847644|ref|YP_006349883.1| - 0.035 14.5 0.0 3.3 8.1 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4440) Ferredoxin_N PF16947.5 gi|389847643|ref|YP_006349882.1| - 6.2e-33 112.7 1.1 7.2e-33 112.5 1.1 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding zf-C2H2_3 PF13878.6 gi|389847643|ref|YP_006349882.1| - 0.14 12.0 0.2 0.22 11.4 0.2 1.3 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO HTH_10 PF04967.12 gi|662859524|ref|YP_006349881.2| - 5.1e-18 64.6 0.6 1.1e-17 63.6 0.6 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.27 gi|662859524|ref|YP_006349881.2| - 0.062 13.3 0.8 0.15 12.0 0.2 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family CPBP PF02517.16 gi|389847641|ref|YP_006349880.1| - 9.7e-17 61.1 2.9 9.7e-17 61.1 2.9 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF975 PF06161.11 gi|389847640|ref|YP_006349879.1| - 5.9e-05 23.0 2.9 5.9e-05 23.0 2.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF975) GPDPase_memb PF10110.9 gi|389847640|ref|YP_006349879.1| - 0.00011 21.2 8.4 0.00011 21.2 8.4 2.2 1 1 1 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF2842 PF11003.8 gi|389847640|ref|YP_006349879.1| - 0.58 10.5 0.1 0.58 10.5 0.1 4.9 3 1 1 5 5 5 0 Protein of unknown function (DUF2842) MASE3 PF17159.4 gi|389847639|ref|YP_006349878.1| - 0.00077 19.1 1.9 0.00083 19.0 1.9 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain DUF2976 PF11190.8 gi|389847639|ref|YP_006349878.1| - 0.04 13.7 0.4 0.062 13.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) HTH_20 PF12840.7 gi|389847638|ref|YP_006349877.1| - 3.3e-07 30.3 0.2 5.7e-07 29.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389847638|ref|YP_006349877.1| - 0.00098 18.9 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389847638|ref|YP_006349877.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389847638|ref|YP_006349877.1| - 0.0031 17.4 0.0 0.005 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389847638|ref|YP_006349877.1| - 0.012 15.5 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|389847638|ref|YP_006349877.1| - 0.057 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|389847638|ref|YP_006349877.1| - 0.062 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family GPDPase_memb PF10110.9 gi|389847637|ref|YP_006349876.1| - 0.00035 19.5 2.0 0.00035 19.5 2.0 2.3 2 1 1 3 3 3 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.11 gi|389847637|ref|YP_006349876.1| - 0.0017 18.2 6.3 0.0043 16.9 6.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF975) DUF21 PF01595.20 gi|389847636|ref|YP_006349875.1| - 8.1e-26 90.8 0.1 1.2e-25 90.3 0.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|389847636|ref|YP_006349875.1| - 2e-12 47.4 0.4 1.3e-05 25.6 0.0 2.9 1 1 2 3 3 3 2 CBS domain malic PF00390.19 gi|389847636|ref|YP_006349875.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Malic enzyme, N-terminal domain Usp PF00582.26 gi|389847635|ref|YP_006349874.1| - 3.6e-62 209.1 3.1 4.1e-35 121.4 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.10 gi|389847635|ref|YP_006349874.1| - 0.022 14.7 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein Na_Ca_ex PF01699.24 gi|389847634|ref|YP_006349873.1| - 1.4e-44 151.7 30.9 6.2e-23 81.4 7.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MFS_MOT1 PF16983.5 gi|389847633|ref|YP_006349872.1| - 0.43 11.0 11.8 1.2 9.6 8.6 2.5 1 1 1 2 2 2 0 Molybdate transporter of MFS superfamily ThiC_Rad_SAM PF01964.18 gi|662859523|ref|YP_006349871.2| - 1.7e-193 643.2 0.0 1.9e-193 642.9 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Yip1 PF04893.17 gi|389847631|ref|YP_006349870.1| - 2.3e-12 46.9 21.9 3.2e-12 46.5 21.9 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|389847631|ref|YP_006349870.1| - 0.005 16.6 12.7 0.0065 16.3 12.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) Cu-oxidase_2 PF07731.14 gi|389847630|ref|YP_006349869.1| - 4.1e-29 101.1 15.4 1.3e-19 70.3 1.7 3.2 3 1 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|389847630|ref|YP_006349869.1| - 6.2e-22 77.8 6.0 9.2e-18 64.4 1.0 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|389847630|ref|YP_006349869.1| - 1.8e-12 47.6 0.0 7.3e-12 45.7 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|389847630|ref|YP_006349869.1| - 0.00043 20.4 0.0 0.34 11.0 0.0 2.7 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|389847630|ref|YP_006349869.1| - 0.031 14.1 1.4 0.067 13.1 1.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|389847630|ref|YP_006349869.1| - 0.16 11.3 0.6 0.31 10.4 0.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HTH_20 PF12840.7 gi|389847629|ref|YP_006349868.1| - 3.6e-14 52.6 0.1 9.6e-14 51.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389847629|ref|YP_006349868.1| - 1.2e-08 34.6 0.0 1.9e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389847629|ref|YP_006349868.1| - 4.2e-08 33.0 0.1 7e-08 32.2 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389847629|ref|YP_006349868.1| - 8.1e-08 32.0 0.0 1.3e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|389847629|ref|YP_006349868.1| - 1.7e-06 27.9 0.0 2.8e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|389847629|ref|YP_006349868.1| - 1e-05 25.3 0.1 2.8e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|389847629|ref|YP_006349868.1| - 1.1e-05 25.4 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|389847629|ref|YP_006349868.1| - 0.0001 21.8 0.0 0.00019 20.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|389847629|ref|YP_006349868.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.6 gi|389847629|ref|YP_006349868.1| - 0.0016 18.9 0.0 0.0025 18.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain EutK_C PF16365.5 gi|389847629|ref|YP_006349868.1| - 0.0022 18.0 0.0 0.046 13.7 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilization protein EutK C-terminus MarR PF01047.22 gi|389847629|ref|YP_006349868.1| - 0.0022 17.9 0.0 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389847629|ref|YP_006349868.1| - 0.0024 17.8 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|389847629|ref|YP_006349868.1| - 0.0024 17.6 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain UPF0122 PF04297.14 gi|389847629|ref|YP_006349868.1| - 0.0041 17.3 0.0 0.0061 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like FUR PF01475.19 gi|389847629|ref|YP_006349868.1| - 0.0076 16.4 0.0 0.0098 16.0 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family Sigma70_r4 PF04545.16 gi|389847629|ref|YP_006349868.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 gi|389847629|ref|YP_006349868.1| - 0.022 15.2 0.0 0.029 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|389847629|ref|YP_006349868.1| - 0.026 14.2 0.0 0.028 14.1 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|389847629|ref|YP_006349868.1| - 0.029 14.7 0.0 0.048 14.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.6 gi|389847629|ref|YP_006349868.1| - 0.03 14.2 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Dimerisation2 PF16864.5 gi|389847629|ref|YP_006349868.1| - 0.033 14.2 0.1 0.082 12.9 0.1 1.6 1 1 0 1 1 1 0 Dimerisation domain HTH_54 PF18607.1 gi|389847629|ref|YP_006349868.1| - 0.048 13.7 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 ParA helix turn helix domain DUF1492 PF07374.11 gi|389847629|ref|YP_006349868.1| - 0.053 13.7 0.0 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_CodY PF08222.11 gi|389847629|ref|YP_006349868.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_38 PF13936.6 gi|389847629|ref|YP_006349868.1| - 0.072 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|389847629|ref|YP_006349868.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HARE-HTH PF05066.13 gi|389847629|ref|YP_006349868.1| - 0.12 12.8 0.0 1.6 9.2 0.0 2.4 2 1 1 3 3 3 0 HB1, ASXL, restriction endonuclease HTH domain RTP PF02334.16 gi|389847629|ref|YP_006349868.1| - 0.12 13.0 0.0 0.18 12.4 0.0 1.3 1 0 0 1 1 1 0 Replication terminator protein HTH_17 PF12728.7 gi|389847629|ref|YP_006349868.1| - 0.15 12.3 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|389847629|ref|YP_006349868.1| - 0.18 12.4 0.0 0.26 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_10 PF04967.12 gi|389847628|ref|YP_006349867.1| - 1.8e-17 62.9 0.0 3.2e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389847628|ref|YP_006349867.1| - 1.5e-06 28.2 1.7 2.2e-06 27.6 1.6 1.4 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_IclR PF09339.10 gi|389847628|ref|YP_006349867.1| - 0.019 14.7 1.3 0.043 13.6 0.1 2.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain PuR_N PF09182.10 gi|389847628|ref|YP_006349867.1| - 0.13 12.3 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_AsnC-type PF13404.6 gi|389847628|ref|YP_006349867.1| - 0.14 12.1 0.1 2.2 8.2 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Copper-bind PF00127.20 gi|389847627|ref|YP_006349866.1| - 2.4e-32 111.3 3.2 2.9e-16 59.7 0.3 3.8 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389847627|ref|YP_006349866.1| - 5.4e-10 39.3 0.0 6.6e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.20 gi|389847627|ref|YP_006349866.1| - 0.0062 16.3 13.0 0.12 12.3 1.7 3.2 3 0 0 3 3 3 2 PKD domain Ribosomal_60s PF00428.19 gi|389847627|ref|YP_006349866.1| - 0.04 14.5 1.0 0.04 14.5 1.0 2.0 2 0 0 2 2 2 0 60s Acidic ribosomal protein Aurora-A_bind PF09041.10 gi|389847627|ref|YP_006349866.1| - 0.15 12.2 0.6 2.6 8.2 0.0 2.5 3 0 0 3 3 3 0 Aurora-A binding His_Phos_1 PF00300.22 gi|389847626|ref|YP_006349865.1| - 0.046 13.4 0.3 0.052 13.2 0.3 1.1 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) COX1 PF00115.20 gi|389847625|ref|YP_006349864.1| - 9.9e-58 196.0 53.3 9.9e-58 196.0 53.3 1.9 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|389847625|ref|YP_006349864.1| - 0.0019 18.5 0.9 0.0019 18.5 0.9 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) Phage_Coat_Gp8 PF05371.12 gi|389847625|ref|YP_006349864.1| - 0.044 13.6 0.8 0.14 11.9 0.8 1.9 1 0 0 1 1 1 0 Phage major coat protein, Gp8 DDE_Tnp_IS1595 PF12762.7 gi|389847624|ref|YP_006349863.1| - 2.5e-08 34.1 0.0 5.6e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 ISXO2-like transposase domain HTH_38 PF13936.6 gi|389847624|ref|YP_006349863.1| - 0.0017 18.1 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|389847624|ref|YP_006349863.1| - 0.048 13.6 0.9 0.13 12.2 0.9 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|389847624|ref|YP_006349863.1| - 0.057 13.2 0.8 0.17 11.7 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain eIF-5_eIF-2B PF01873.17 gi|389847624|ref|YP_006349863.1| - 0.059 13.2 0.0 0.69 9.8 0.1 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HTH_29 PF13551.6 gi|389847624|ref|YP_006349863.1| - 0.17 11.9 0.1 0.17 11.9 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn helix DNA_RNApol_7kD PF03604.13 gi|389847624|ref|YP_006349863.1| - 0.26 11.0 1.5 0.7 9.6 1.5 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|389847624|ref|YP_006349863.1| - 2.7 7.5 7.6 2 7.9 4.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Copper-bind PF00127.20 gi|389847623|ref|YP_006349862.1| - 4.1e-15 56.0 0.5 2.9e-14 53.3 0.5 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389847623|ref|YP_006349862.1| - 0.00098 19.2 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.20 gi|389847623|ref|YP_006349862.1| - 0.0038 17.1 1.3 0.0038 17.1 1.3 2.2 2 0 0 2 2 2 1 PKD domain Radical_SAM PF04055.21 gi|389847622|ref|YP_006349861.1| - 1.3e-21 77.7 0.0 1.9e-21 77.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|389847622|ref|YP_006349861.1| - 6.7e-06 26.4 0.0 1.2e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|389847622|ref|YP_006349861.1| - 0.00026 21.1 0.0 0.00051 20.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2249 PF10006.9 gi|389847621|ref|YP_006349860.1| - 3e-16 59.1 0.5 3.6e-16 58.8 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|389847621|ref|YP_006349860.1| - 0.0068 16.2 0.0 0.0079 16.0 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Cu-oxidase_3 PF07732.15 gi|389847620|ref|YP_006349859.1| - 7.5e-14 51.8 0.2 3.6e-13 49.6 0.1 2.0 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|389847620|ref|YP_006349859.1| - 6.4e-10 38.9 2.0 4.5e-08 32.9 0.3 3.4 2 2 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.20 gi|389847620|ref|YP_006349859.1| - 1.1e-06 29.0 1.0 8.8e-06 26.1 0.1 2.5 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389847620|ref|YP_006349859.1| - 6.7e-06 26.2 0.0 0.00013 22.0 0.0 2.6 3 1 0 3 3 3 1 Cupredoxin-like domain NYD-SP12_N PF15015.6 gi|389847619|ref|YP_006349858.1| - 0.044 12.2 0.0 0.054 11.9 0.0 1.0 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal Cupin_2 PF07883.11 gi|389847618|ref|YP_006349857.1| - 6.3e-11 41.8 0.2 8.3e-11 41.4 0.2 1.3 1 0 0 1 1 1 1 Cupin domain PCO_ADO PF07847.12 gi|389847618|ref|YP_006349857.1| - 9.7e-05 21.9 0.0 9.7e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 PCO_ADO Pirin_C PF05726.13 gi|389847618|ref|YP_006349857.1| - 0.0003 21.1 0.0 0.00037 20.8 0.0 1.1 1 0 0 1 1 1 1 Pirin C-terminal cupin domain HutD PF05962.11 gi|389847618|ref|YP_006349857.1| - 0.022 14.7 0.0 0.027 14.5 0.0 1.2 1 0 0 1 1 1 0 HutD Pirin PF02678.16 gi|389847618|ref|YP_006349857.1| - 0.027 14.4 0.1 0.03 14.3 0.1 1.2 1 0 0 1 1 1 0 Pirin AraC_binding_2 PF14525.6 gi|389847618|ref|YP_006349857.1| - 0.04 13.6 0.1 0.081 12.6 0.1 1.4 1 1 0 1 1 1 0 AraC-binding-like domain AraC_binding PF02311.19 gi|389847618|ref|YP_006349857.1| - 0.077 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C_2 PF17954.1 gi|389847618|ref|YP_006349857.1| - 0.092 12.9 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain COX1 PF00115.20 gi|389847617|ref|YP_006349856.1| - 9.2e-08 31.3 51.8 1e-05 24.6 10.2 4.4 1 1 2 4 4 4 4 Cytochrome C and Quinol oxidase polypeptide I DUF4234 PF14018.6 gi|389847617|ref|YP_006349856.1| - 0.3 11.2 3.3 8.1 6.6 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4234) DUF5362 PF17319.2 gi|389847617|ref|YP_006349856.1| - 6.6 6.7 8.2 0.79 9.6 0.1 3.3 3 1 1 4 4 4 0 Family of unknown function (DUF5362) DUF2249 PF10006.9 gi|389847616|ref|YP_006349855.1| - 1.3e-25 89.0 0.3 1.4e-25 88.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) ELFV_dehydrog PF00208.21 gi|389847615|ref|YP_006349854.1| - 1.3e-68 231.4 0.0 1.6e-68 231.0 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|389847615|ref|YP_006349854.1| - 1.1e-54 183.8 0.0 2e-54 183.0 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Bac_GDH PF05088.12 gi|389847615|ref|YP_006349854.1| - 0.00087 16.9 0.0 0.0015 16.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|389847615|ref|YP_006349854.1| - 0.0018 17.7 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389847615|ref|YP_006349854.1| - 0.0099 16.3 0.0 0.018 15.5 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|389847615|ref|YP_006349854.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DZR PF12773.7 gi|389847614|ref|YP_006349853.1| - 0.00078 19.4 0.7 0.00088 19.3 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2HC5 PF06221.13 gi|389847614|ref|YP_006349853.1| - 0.0011 19.0 0.3 0.0011 18.9 0.3 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.11 gi|389847614|ref|YP_006349853.1| - 0.0077 16.3 1.1 0.0085 16.2 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) TackOD1 PF18551.1 gi|389847614|ref|YP_006349853.1| - 0.018 14.7 0.1 0.021 14.5 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|389847614|ref|YP_006349853.1| - 0.029 14.5 2.8 0.06 13.5 2.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|389847614|ref|YP_006349853.1| - 0.22 12.0 1.4 3.1 8.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_9 PF14369.6 gi|389847614|ref|YP_006349853.1| - 0.6 10.4 5.6 2 8.7 4.2 2.0 1 1 1 2 2 2 0 zinc-ribbon BAT PF15915.5 gi|389847613|ref|YP_006349852.1| - 7e-39 133.2 10.2 7e-39 133.2 10.2 3.1 3 0 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|389847613|ref|YP_006349852.1| - 3.1e-23 82.6 5.6 1.4e-14 54.6 0.1 2.6 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|389847613|ref|YP_006349852.1| - 1.1e-17 63.6 0.0 2.8e-17 62.3 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|389847613|ref|YP_006349852.1| - 4.2e-14 52.7 5.9 3.6e-12 46.5 0.6 3.6 3 1 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|389847613|ref|YP_006349852.1| - 1e-12 48.2 0.0 3.9e-12 46.3 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|389847613|ref|YP_006349852.1| - 2.1e-12 47.0 0.1 1.3e-08 34.8 0.1 2.9 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.6 gi|389847613|ref|YP_006349852.1| - 3.3e-10 40.4 2.5 3.7e-05 24.1 0.1 3.4 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.7 gi|389847613|ref|YP_006349852.1| - 3.6e-10 40.0 0.1 1.7e-08 34.7 0.0 2.8 2 0 0 2 2 2 1 PAS domain GAF PF01590.26 gi|389847613|ref|YP_006349852.1| - 1.1e-08 35.8 0.9 0.0032 18.1 0.0 2.7 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.7 gi|389847613|ref|YP_006349852.1| - 8.6e-05 22.5 0.2 0.0037 17.3 0.0 2.9 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|389847613|ref|YP_006349852.1| - 0.0014 18.8 2.7 1.4 9.1 0.0 3.5 3 1 0 3 3 3 2 PAS fold OKR_DC_1_N PF03709.15 gi|389847613|ref|YP_006349852.1| - 0.0033 17.7 0.6 0.032 14.5 0.0 3.0 2 1 1 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain Sigma70_r4 PF04545.16 gi|389847613|ref|YP_006349852.1| - 0.058 12.9 0.0 0.47 10.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HtaA PF04213.13 gi|389847612|ref|YP_006349851.1| - 5.1e-06 27.1 0.3 0.03 14.8 0.0 3.4 1 1 3 4 4 4 2 Htaa FecR PF04773.13 gi|389847612|ref|YP_006349851.1| - 7.6e-06 26.5 0.4 11 6.7 0.0 5.4 1 1 5 6 6 6 1 FecR protein DUF945 PF06097.11 gi|389847612|ref|YP_006349851.1| - 1.2e-05 24.6 4.8 0.14 11.3 0.1 3.2 1 1 2 3 3 3 3 Bacterial protein of unknown function (DUF945) Glyco_hydro_65C PF03633.15 gi|389847612|ref|YP_006349851.1| - 0.00019 21.3 8.5 1.4 8.9 0.1 6.2 5 3 1 6 6 6 2 Glycosyl hydrolase family 65, C-terminal domain PCC_BT PF18140.1 gi|389847612|ref|YP_006349851.1| - 0.001 19.4 5.7 26 5.1 0.0 5.2 1 1 2 3 3 3 0 Propionyl-coenzyme A carboxylase BT domain DUF2807 PF10988.8 gi|389847612|ref|YP_006349851.1| - 0.0063 16.3 10.3 1.1 9.1 6.1 3.5 1 1 2 3 3 3 1 Putative auto-transporter adhesin, head GIN domain YabP PF07873.11 gi|389847612|ref|YP_006349851.1| - 0.0082 15.9 3.6 2.3 8.0 0.0 4.1 5 0 0 5 5 5 1 YabP family CS PF04969.16 gi|389847612|ref|YP_006349851.1| - 0.019 15.9 1.0 7.3 7.7 0.0 4.5 4 2 1 5 5 5 0 CS domain DUF4140 PF13600.6 gi|389847612|ref|YP_006349851.1| - 0.21 12.0 1.6 1.1 9.7 1.0 2.5 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF2382 PF09557.10 gi|389847612|ref|YP_006349851.1| - 2.7 8.3 9.1 15 5.9 1.7 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF2382) FKBP26_C PF18046.1 gi|389847612|ref|YP_006349851.1| - 3.5 7.8 11.0 1.4e+02 2.7 0.1 6.1 5 2 3 9 9 9 0 FKBP26_C-terminal MarR PF01047.22 gi|389847611|ref|YP_006349850.1| - 2e-07 30.8 0.1 3.8e-07 29.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389847611|ref|YP_006349850.1| - 2.9e-06 27.1 0.1 5.8e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|389847611|ref|YP_006349850.1| - 3.4e-05 23.6 0.0 6.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389847611|ref|YP_006349850.1| - 4.1e-05 23.4 0.0 8.7e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|389847611|ref|YP_006349850.1| - 0.0016 18.3 0.0 0.0052 16.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|389847611|ref|YP_006349850.1| - 0.0088 16.4 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_7 PF02796.15 gi|389847611|ref|YP_006349850.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|389847611|ref|YP_006349850.1| - 0.011 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|389847611|ref|YP_006349850.1| - 0.02 14.5 0.0 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RuBisCo_chap_C PF18087.1 gi|389847611|ref|YP_006349850.1| - 0.029 14.0 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 Rubisco Assembly chaperone C-terminal domain Sulfolobus_pRN PF05584.11 gi|389847611|ref|YP_006349850.1| - 0.051 13.6 0.0 1.3 9.1 0.1 2.2 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_27 PF13463.6 gi|389847611|ref|YP_006349850.1| - 0.056 13.9 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|389847611|ref|YP_006349850.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|389847611|ref|YP_006349850.1| - 0.15 12.0 0.0 0.47 10.4 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Peripla_BP_2 PF01497.18 gi|389847610|ref|YP_006349849.1| - 2e-10 40.6 0.0 3.8e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Periplasmic binding protein FecR PF04773.13 gi|389847608|ref|YP_006349847.1| - 1.2e-07 32.2 0.3 1 10.0 0.0 5.2 1 1 3 4 4 4 1 FecR protein Glyco_hydro_65C PF03633.15 gi|389847608|ref|YP_006349847.1| - 9.6e-07 28.6 6.4 2 8.4 0.2 7.1 2 2 6 8 8 8 1 Glycosyl hydrolase family 65, C-terminal domain HtaA PF04213.13 gi|389847608|ref|YP_006349847.1| - 6.1e-06 26.8 0.3 0.12 12.8 0.1 3.7 1 1 1 2 2 2 2 Htaa DUF2345 PF10106.9 gi|389847608|ref|YP_006349847.1| - 3.3e-05 23.8 0.0 2.1 8.2 0.0 3.6 3 1 1 4 4 4 3 Uncharacterized protein conserved in bacteria (DUF2345) DUF4968 PF16338.5 gi|389847608|ref|YP_006349847.1| - 3.6e-05 24.0 1.2 0.86 10.0 0.1 5.5 3 3 2 5 5 5 1 Domain of unknown function (DUF4968) DUF945 PF06097.11 gi|389847608|ref|YP_006349847.1| - 3.6e-05 23.1 4.0 0.061 12.4 4.1 3.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF945) Myco_19_kDa PF05481.12 gi|389847608|ref|YP_006349847.1| - 0.001 19.3 0.4 0.02 15.2 0.1 3.0 1 1 0 2 2 2 1 Mycobacterium 19 kDa lipoprotein antigen PCC_BT PF18140.1 gi|389847608|ref|YP_006349847.1| - 0.0016 18.8 2.4 28 5.1 0.1 4.9 1 1 3 4 4 4 0 Propionyl-coenzyme A carboxylase BT domain TIG PF01833.24 gi|389847608|ref|YP_006349847.1| - 0.0038 17.3 0.0 1 9.5 0.0 2.6 2 0 0 2 2 2 1 IPT/TIG domain YabP PF07873.11 gi|389847608|ref|YP_006349847.1| - 0.0075 16.0 6.5 0.73 9.7 0.2 4.6 4 2 1 5 5 5 1 YabP family DUF3540 PF12059.8 gi|389847608|ref|YP_006349847.1| - 0.0088 15.9 0.0 17 5.1 0.0 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF3540) Sarcoglycan_1 PF04790.13 gi|389847608|ref|YP_006349847.1| - 0.0096 15.3 0.0 1.6 8.0 0.0 2.9 1 1 1 3 3 3 1 Sarcoglycan complex subunit protein DUF2382 PF09557.10 gi|389847608|ref|YP_006349847.1| - 0.01 16.1 3.9 0.67 10.2 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF2382) DUF2125 PF09898.9 gi|389847608|ref|YP_006349847.1| - 0.043 13.5 0.0 2 8.0 0.0 2.8 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2125) DUF2807 PF10988.8 gi|389847608|ref|YP_006349847.1| - 0.046 13.5 10.6 0.27 11.0 5.2 3.5 1 1 2 3 3 3 0 Putative auto-transporter adhesin, head GIN domain DUF3060 PF11259.8 gi|389847608|ref|YP_006349847.1| - 0.049 13.3 0.2 0.59 9.9 0.0 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF3060) Calycin_like PF13944.6 gi|389847608|ref|YP_006349847.1| - 0.053 13.8 3.3 6.9 7.0 1.4 3.4 1 1 0 2 2 2 0 Calycin-like beta-barrel domain CS PF04969.16 gi|389847608|ref|YP_006349847.1| - 0.22 12.6 3.0 19 6.3 0.1 4.2 3 3 2 5 5 5 0 CS domain HSP20 PF00011.21 gi|389847608|ref|YP_006349847.1| - 1.4 9.1 17.6 3.9 7.7 0.9 5.7 2 1 3 6 6 6 0 Hsp20/alpha crystallin family STT3_PglB_C PF18527.1 gi|389847608|ref|YP_006349847.1| - 5.4 7.2 7.5 4.1 7.6 0.2 3.6 4 1 0 4 4 3 0 STT3/PglB C-terminal beta-barrel domain DUF2993 PF11209.8 gi|389847608|ref|YP_006349847.1| - 7.1 6.8 24.5 9.5e+02 -0.1 24.5 3.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) LLGL PF08366.13 gi|389847607|ref|YP_006349846.1| - 5.5 7.4 7.1 7.4 7.0 7.1 1.3 1 0 0 1 1 1 0 LLGL2 Nitroreductase PF00881.24 gi|389847606|ref|YP_006349845.1| - 4.5e-32 111.4 0.0 5.8e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|389847606|ref|YP_006349845.1| - 7.6e-05 22.4 0.0 0.039 13.5 0.0 2.7 2 1 0 2 2 2 2 Putative TM nitroreductase DNA_topoisoIV PF00521.20 gi|389847606|ref|YP_006349845.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A MCPsignal PF00015.21 gi|389847605|ref|YP_006349844.1| - 1.7e-42 145.1 50.9 2.2e-40 138.3 25.9 3.3 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.6 gi|389847605|ref|YP_006349844.1| - 7.6e-42 144.0 3.7 7.6e-42 144.0 3.7 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389847605|ref|YP_006349844.1| - 7.4e-28 98.4 4.9 1.1e-27 97.9 4.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF948 PF06103.11 gi|389847605|ref|YP_006349844.1| - 9.3e-05 22.6 35.0 0.002 18.3 1.6 5.2 4 1 1 5 5 4 3 Bacterial protein of unknown function (DUF948) SBP_bac_11 PF13531.6 gi|389847605|ref|YP_006349844.1| - 0.0019 18.0 4.3 0.0019 18.0 4.3 3.0 3 2 1 4 4 4 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|389847605|ref|YP_006349844.1| - 0.0093 15.4 0.0 0.65 9.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Med30 PF11315.8 gi|389847605|ref|YP_006349844.1| - 0.084 13.1 4.0 4.2 7.6 0.0 3.3 2 1 1 3 3 3 0 Mediator complex subunit 30 Spc7 PF08317.11 gi|389847605|ref|YP_006349844.1| - 0.19 10.6 28.5 0.043 12.7 7.9 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF1131 PF06572.12 gi|389847605|ref|YP_006349844.1| - 0.29 10.8 1.9 0.36 10.5 0.1 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1131) SnoaL PF07366.12 gi|389847605|ref|YP_006349844.1| - 0.48 10.2 4.5 8.3 6.2 0.3 4.2 3 1 0 4 4 4 0 SnoaL-like polyketide cyclase Laminin_II PF06009.12 gi|389847605|ref|YP_006349844.1| - 0.61 10.1 36.0 0.33 10.9 4.3 4.6 2 2 1 4 4 4 0 Laminin Domain II DUF2935 PF11155.8 gi|389847605|ref|YP_006349844.1| - 1.1 9.6 3.0 23 5.4 0.4 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) UPF0242 PF06785.11 gi|389847605|ref|YP_006349844.1| - 1.1 9.3 18.1 1.2 9.2 2.9 3.2 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF489 PF04356.12 gi|389847605|ref|YP_006349844.1| - 2.4 8.1 9.6 0.35 10.9 2.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF489) Not3 PF04065.15 gi|389847605|ref|YP_006349844.1| - 2.5 7.4 19.7 0.12 11.8 3.4 3.2 1 1 2 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component Prominin PF05478.11 gi|389847605|ref|YP_006349844.1| - 2.6 5.9 15.8 3.1 5.6 2.5 2.4 1 1 2 3 3 3 0 Prominin BLOC1_2 PF10046.9 gi|389847605|ref|YP_006349844.1| - 2.6 8.4 21.4 9.5 6.6 0.5 5.8 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Rx_N PF18052.1 gi|389847605|ref|YP_006349844.1| - 3 8.2 10.4 1.2 9.5 0.6 4.4 4 1 1 5 5 5 0 Rx N-terminal domain TPR_MLP1_2 PF07926.12 gi|389847605|ref|YP_006349844.1| - 3.3 7.8 38.6 0.99 9.5 1.4 4.1 2 1 0 4 4 3 0 TPR/MLP1/MLP2-like protein TMPIT PF07851.13 gi|389847605|ref|YP_006349844.1| - 3.3 6.9 16.0 0.64 9.2 0.7 3.4 2 2 2 4 4 4 0 TMPIT-like protein SnoaL_2 PF12680.7 gi|389847605|ref|YP_006349844.1| - 4.4 8.0 7.6 39 5.0 0.0 4.9 3 1 1 4 4 4 0 SnoaL-like domain DUF1664 PF07889.12 gi|389847605|ref|YP_006349844.1| - 5.4 7.1 26.2 2.8 8.0 2.7 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|389847605|ref|YP_006349844.1| - 7.4 6.9 8.6 22 5.4 0.2 4.2 3 1 1 4 4 4 0 Uncharacterized conserved protein GAS PF13851.6 gi|389847605|ref|YP_006349844.1| - 8.8 5.6 11.2 9.3 5.5 0.2 3.2 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding TBP PF00352.21 gi|389847604|ref|YP_006349843.1| - 1.5e-56 188.3 0.0 5.2e-27 93.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|389847604|ref|YP_006349843.1| - 3.2e-06 27.2 0.0 0.0029 17.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|389847604|ref|YP_006349843.1| - 0.095 12.7 0.0 0.32 11.0 0.0 1.8 1 1 1 2 2 2 0 DUF218 domain Goodbye PF17109.5 gi|389847604|ref|YP_006349843.1| - 0.18 12.2 0.0 17 5.9 0.0 2.2 2 0 0 2 2 2 0 fungal STAND N-terminal Goodbye domain ADH_N_2 PF16884.5 gi|389847603|ref|YP_006349842.1| - 2.9e-39 133.3 0.0 5.7e-39 132.3 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|389847603|ref|YP_006349842.1| - 4.2e-20 72.0 0.2 8.3e-20 71.1 0.1 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389847603|ref|YP_006349842.1| - 8.2e-11 43.1 0.2 1.5e-10 42.2 0.0 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF543 PF04418.12 gi|389847602|ref|YP_006349841.1| - 0.22 11.6 1.3 0.38 10.8 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF543) Aminotran_3 PF00202.21 gi|389847601|ref|YP_006349840.1| - 8.9e-85 284.8 0.0 3.2e-84 283.0 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|389847601|ref|YP_006349840.1| - 0.019 14.3 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase IclR PF01614.18 gi|389847600|ref|YP_006349839.1| - 4.6e-36 123.5 0.0 8.3e-36 122.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389847600|ref|YP_006349839.1| - 2.1e-08 33.8 0.0 5.4e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389847600|ref|YP_006349839.1| - 1.5e-07 30.8 0.0 2.9e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|389847600|ref|YP_006349839.1| - 3.2e-07 30.1 0.0 1.5e-06 27.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389847600|ref|YP_006349839.1| - 5.2e-06 26.3 0.0 3.5e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|389847600|ref|YP_006349839.1| - 0.00014 21.7 0.0 0.00077 19.3 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|389847600|ref|YP_006349839.1| - 0.0016 18.4 0.0 0.0056 16.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|389847600|ref|YP_006349839.1| - 0.0019 18.1 0.0 0.0061 16.5 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|389847600|ref|YP_006349839.1| - 0.0025 17.5 0.1 0.02 14.6 0.0 2.5 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.6 gi|389847600|ref|YP_006349839.1| - 0.0027 17.8 0.1 0.41 10.9 0.0 2.9 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|389847600|ref|YP_006349839.1| - 0.0033 17.4 0.0 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|389847600|ref|YP_006349839.1| - 0.0051 17.3 0.0 0.016 15.7 0.0 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|389847600|ref|YP_006349839.1| - 0.03 14.3 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|389847600|ref|YP_006349839.1| - 0.14 12.1 0.0 0.42 10.5 0.0 1.9 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Na_H_antiporter PF03553.14 gi|389847599|ref|YP_006349838.1| - 1.9e-54 185.0 44.5 1.9e-51 175.1 24.1 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family HTH_10 PF04967.12 gi|389847598|ref|YP_006349837.1| - 8.4e-21 73.5 0.1 1.5e-20 72.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389847598|ref|YP_006349837.1| - 0.0013 18.4 0.6 0.034 13.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_50 PF18024.1 gi|389847598|ref|YP_006349837.1| - 0.0015 18.1 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|389847598|ref|YP_006349837.1| - 0.0056 16.2 0.1 0.012 15.1 0.1 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_psq PF05225.16 gi|389847598|ref|YP_006349837.1| - 0.021 14.5 0.0 0.075 12.8 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_24 PF13412.6 gi|389847598|ref|YP_006349837.1| - 0.022 14.3 0.0 0.045 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phenol_Hydrox PF02332.18 gi|389847598|ref|YP_006349837.1| - 0.03 13.9 0.0 0.077 12.5 0.0 1.7 1 0 0 1 1 1 0 Methane/Phenol/Toluene Hydroxylase GerE PF00196.19 gi|389847598|ref|YP_006349837.1| - 0.088 12.4 0.1 0.87 9.2 0.1 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|389847598|ref|YP_006349837.1| - 0.096 12.5 0.1 0.65 9.8 0.1 2.4 2 1 0 2 2 2 0 LexA DNA binding domain Coat_F PF07875.12 gi|389847598|ref|YP_006349837.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Coat F domain Usp PF00582.26 gi|389847597|ref|YP_006349836.1| - 2.3e-29 102.7 1.8 2.6e-29 102.5 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family PmbA_TldD PF01523.16 gi|389847597|ref|YP_006349836.1| - 0.058 13.2 0.1 0.064 13.1 0.1 1.2 1 0 0 1 1 1 0 Putative modulator of DNA gyrase DUF4010 PF13194.6 gi|389847596|ref|YP_006349835.1| - 2.1e-53 181.1 20.5 2.1e-53 181.1 20.5 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|389847596|ref|YP_006349835.1| - 1.5e-22 80.2 6.0 1.5e-22 80.2 6.0 3.5 3 1 0 4 4 4 1 MgtC family Phosphonate-bd PF12974.7 gi|389847595|ref|YP_006349834.1| - 6.6e-60 202.7 0.1 9e-60 202.3 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|389847595|ref|YP_006349834.1| - 0.00026 20.5 0.0 0.003 17.0 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|389847595|ref|YP_006349834.1| - 0.00058 19.9 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.12 gi|389847595|ref|YP_006349834.1| - 0.096 12.2 0.0 0.44 10.1 0.0 1.9 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system ABC_tran PF00005.27 gi|389847594|ref|YP_006349833.1| - 2.4e-36 125.3 0.0 3.5e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847594|ref|YP_006349833.1| - 2.9e-09 37.2 0.1 0.0019 18.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|389847594|ref|YP_006349833.1| - 3.1e-05 24.0 0.1 0.00094 19.1 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|389847594|ref|YP_006349833.1| - 0.0001 22.6 0.3 0.0023 18.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389847594|ref|YP_006349833.1| - 0.00014 21.5 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389847594|ref|YP_006349833.1| - 0.00014 22.3 0.5 0.00035 21.0 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|389847594|ref|YP_006349833.1| - 0.00024 20.9 0.1 0.0013 18.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|389847594|ref|YP_006349833.1| - 0.00082 19.9 0.1 0.0015 19.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389847594|ref|YP_006349833.1| - 0.0015 18.0 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|389847594|ref|YP_006349833.1| - 0.0018 18.4 0.0 0.011 16.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|389847594|ref|YP_006349833.1| - 0.0034 16.8 0.0 0.0049 16.3 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|389847594|ref|YP_006349833.1| - 0.0043 16.3 0.0 0.0061 15.8 0.0 1.4 1 1 0 1 1 1 1 NB-ARC domain Rad17 PF03215.15 gi|389847594|ref|YP_006349833.1| - 0.029 14.3 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|389847594|ref|YP_006349833.1| - 0.037 12.8 0.0 5.2 5.8 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|389847594|ref|YP_006349833.1| - 0.043 13.9 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|389847594|ref|YP_006349833.1| - 0.049 14.0 0.1 0.13 12.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|389847594|ref|YP_006349833.1| - 0.068 13.1 0.0 0.09 12.7 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|389847594|ref|YP_006349833.1| - 0.071 13.4 0.2 1.1 9.5 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|389847594|ref|YP_006349833.1| - 0.081 12.6 0.0 0.51 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|389847594|ref|YP_006349833.1| - 0.16 11.7 0.0 0.21 11.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|389847594|ref|YP_006349833.1| - 0.19 10.5 0.0 0.24 10.1 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|389847593|ref|YP_006349832.1| - 1.1e-14 54.6 8.4 1.1e-14 54.6 8.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389847592|ref|YP_006349831.1| - 4e-15 56.0 16.1 4e-15 56.0 16.1 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component LAP1C PF05609.12 gi|389847591|ref|YP_006349830.1| - 0.17 10.9 8.5 0.26 10.3 8.5 1.4 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) Macoilin PF09726.9 gi|389847591|ref|YP_006349830.1| - 0.49 8.9 9.0 0.62 8.5 9.0 1.2 1 0 0 1 1 1 0 Macoilin family PAS PF00989.25 gi|389847590|ref|YP_006349829.1| - 1e-16 60.9 0.1 2.7e-16 59.5 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|389847590|ref|YP_006349829.1| - 9.4e-16 58.3 0.0 1.7e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|389847590|ref|YP_006349829.1| - 6.3e-15 55.3 0.1 2.2e-14 53.6 0.1 1.9 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.6 gi|389847590|ref|YP_006349829.1| - 7.1e-14 52.3 0.1 6.5e-13 49.2 0.1 2.5 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|389847590|ref|YP_006349829.1| - 6.2e-11 42.4 0.3 1.1e-09 38.4 0.1 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|389847590|ref|YP_006349829.1| - 8.2e-11 42.1 0.1 9e-10 38.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|389847590|ref|YP_006349829.1| - 2.6e-09 37.0 0.4 9.4e-09 35.2 0.4 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|389847590|ref|YP_006349829.1| - 2.3e-05 24.3 0.1 0.00067 19.6 0.0 2.8 3 0 0 3 3 3 1 PAS domain GAF_3 PF13492.6 gi|389847590|ref|YP_006349829.1| - 0.0029 18.0 0.0 0.0076 16.6 0.0 1.8 2 0 0 2 2 2 1 GAF domain PAS_12 PF18095.1 gi|389847590|ref|YP_006349829.1| - 0.0093 15.6 0.0 0.057 13.1 0.0 2.1 2 0 0 2 2 2 1 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|389847590|ref|YP_006349829.1| - 0.081 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arylsulfotran_2 PF14269.6 gi|389847589|ref|YP_006349828.1| - 7.3e-11 42.0 0.5 8.3e-10 38.5 0.3 2.4 1 1 1 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|389847589|ref|YP_006349828.1| - 2.5e-10 39.8 3.3 7.7e-10 38.2 1.3 2.3 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|389847589|ref|YP_006349828.1| - 0.0044 17.0 3.3 1.4 9.1 0.2 4.1 4 0 0 4 4 4 2 NHL repeat PQQ PF01011.21 gi|389847589|ref|YP_006349828.1| - 0.082 12.9 0.2 10 6.2 0.0 3.4 3 0 0 3 3 3 0 PQQ enzyme repeat AMP-binding PF00501.28 gi|389847587|ref|YP_006349826.1| - 9.7e-96 320.9 0.0 1.2e-95 320.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389847587|ref|YP_006349826.1| - 1.1e-23 84.0 1.3 2.6e-23 82.8 1.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Polysacc_synt PF01943.17 gi|389847585|ref|YP_006349824.1| - 1.2e-23 83.9 27.5 1.2e-23 83.9 27.5 2.9 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|389847585|ref|YP_006349824.1| - 3.3e-11 43.4 22.2 3.3e-11 43.4 22.2 3.9 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|389847585|ref|YP_006349824.1| - 2.7e-08 33.7 8.2 2.7e-08 33.7 8.2 3.4 3 1 0 3 3 3 2 MatE YopE PF03545.13 gi|389847585|ref|YP_006349824.1| - 0.15 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Yersinia virulence determinant (YopE) DUF354 PF04007.12 gi|389847584|ref|YP_006349823.1| - 6.6e-20 71.4 0.0 7.5e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|389847584|ref|YP_006349823.1| - 0.0052 16.8 0.1 0.0087 16.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|389847584|ref|YP_006349823.1| - 0.033 14.2 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Caskin-tail PF16632.5 gi|389847584|ref|YP_006349823.1| - 0.046 14.1 0.7 0.12 12.8 0.7 1.7 1 0 0 1 1 1 0 C-terminal region of Caskin Glycos_transf_2 PF00535.26 gi|389847583|ref|YP_006349822.1| - 1.2e-18 67.6 0.1 2.2e-09 37.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|389847583|ref|YP_006349822.1| - 0.025 15.1 0.0 0.048 14.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389847583|ref|YP_006349822.1| - 0.16 11.8 0.0 0.55 10.1 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase like family 2 UDPG_MGDP_dh_N PF03721.14 gi|389847582|ref|YP_006349821.1| - 3e-37 128.0 0.1 7.1e-37 126.8 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389847582|ref|YP_006349821.1| - 1.7e-24 85.8 0.0 3.1e-24 85.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389847582|ref|YP_006349821.1| - 4e-20 72.2 0.0 1.3e-19 70.5 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|389847582|ref|YP_006349821.1| - 7.4e-07 29.5 0.0 3.6e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|389847582|ref|YP_006349821.1| - 2.2e-05 23.9 0.0 0.0077 15.6 0.0 2.8 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|389847582|ref|YP_006349821.1| - 0.00026 21.0 0.0 0.0052 16.8 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|389847582|ref|YP_006349821.1| - 0.0034 17.1 0.0 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|389847582|ref|YP_006349821.1| - 0.0077 16.1 0.1 0.032 14.1 0.1 1.9 1 1 0 1 1 1 1 Rossmann-like domain DUF1884 PF08967.10 gi|389847582|ref|YP_006349821.1| - 0.0087 16.3 0.5 0.33 11.2 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1884) 3HCDH_N PF02737.18 gi|389847582|ref|YP_006349821.1| - 0.03 14.2 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RE_MjaI PF09568.10 gi|389847582|ref|YP_006349821.1| - 0.034 14.0 0.2 3.2 7.6 0.1 2.5 1 1 1 2 2 2 0 MjaI restriction endonuclease NTP_transferase PF00483.23 gi|389847581|ref|YP_006349820.1| - 2e-28 99.6 0.0 2.6e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|389847581|ref|YP_006349820.1| - 3e-18 64.8 22.2 2.1e-06 27.2 4.3 4.9 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|389847581|ref|YP_006349820.1| - 4.6e-12 46.6 0.0 3.2e-11 43.8 0.0 2.0 1 1 1 2 2 2 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|389847581|ref|YP_006349820.1| - 5e-08 32.5 18.5 0.0013 18.4 2.5 4.5 2 1 3 5 5 5 4 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.26 gi|389847581|ref|YP_006349820.1| - 4.7e-06 26.5 0.1 7.2e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4954 PF16314.5 gi|389847581|ref|YP_006349820.1| - 0.00084 17.6 0.8 0.0014 16.9 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Glyco_tranf_2_3 PF13641.6 gi|389847581|ref|YP_006349820.1| - 0.001 19.0 0.1 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 IspD PF01128.19 gi|389847581|ref|YP_006349820.1| - 0.0024 17.6 0.3 0.004 16.9 0.3 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|389847581|ref|YP_006349820.1| - 0.0026 16.7 1.6 0.031 13.2 0.4 2.7 1 1 1 2 2 2 1 L-fucokinase Bactofilin PF04519.13 gi|389847581|ref|YP_006349820.1| - 0.088 13.1 9.1 1.2 9.4 0.8 2.7 1 1 0 2 2 2 0 Polymer-forming cytoskeletal CTP_transf_3 PF02348.19 gi|389847581|ref|YP_006349820.1| - 0.09 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase SIS PF01380.22 gi|389847580|ref|YP_006349819.1| - 8.3e-44 148.6 0.5 1.9e-21 76.3 0.4 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|389847580|ref|YP_006349819.1| - 6.1e-20 71.8 0.1 1.2e-19 70.8 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|389847580|ref|YP_006349819.1| - 1.5e-16 60.4 0.0 2.8e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|389847580|ref|YP_006349819.1| - 0.028 13.3 0.1 0.052 12.4 0.1 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II PK_C PF02887.16 gi|389847580|ref|YP_006349819.1| - 0.094 12.9 0.4 0.54 10.5 0.1 2.3 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Kinetochor_Ybp2 PF08568.10 gi|389847580|ref|YP_006349819.1| - 0.16 10.4 0.0 0.21 10.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family, YAP/Alf4/glomulin YdjM PF04307.14 gi|389847578|ref|YP_006349817.1| - 1.7e-07 30.7 6.6 5.2e-07 29.1 6.6 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|389847578|ref|YP_006349817.1| - 0.18 11.8 0.1 0.64 10.0 0.1 1.8 1 1 0 1 1 1 0 Zinc dependent phospholipase C Cdc6_C PF09079.11 gi|389847577|ref|YP_006349816.1| - 2.6e-17 62.6 0.0 6.6e-17 61.3 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389847577|ref|YP_006349816.1| - 4.6e-09 36.7 0.0 1.2e-08 35.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389847577|ref|YP_006349816.1| - 3.3e-08 34.1 2.3 6.4e-08 33.2 0.3 2.4 1 1 1 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|389847577|ref|YP_006349816.1| - 1.3e-05 24.7 0.0 2.9e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|389847577|ref|YP_006349816.1| - 0.0015 18.9 0.1 0.0064 16.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|389847577|ref|YP_006349816.1| - 0.0016 18.4 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|389847577|ref|YP_006349816.1| - 0.0057 16.7 0.0 0.018 15.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|389847577|ref|YP_006349816.1| - 0.021 14.5 0.0 0.043 13.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|389847577|ref|YP_006349816.1| - 0.032 14.6 0.0 0.076 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_32 PF13654.6 gi|389847577|ref|YP_006349816.1| - 0.043 12.6 0.4 0.49 9.1 0.3 2.2 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|389847577|ref|YP_006349816.1| - 0.054 12.6 0.0 0.14 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_assoc_2 PF16193.5 gi|389847577|ref|YP_006349816.1| - 0.069 13.5 0.1 0.19 12.1 0.1 1.7 1 0 0 1 1 1 0 AAA C-terminal domain TsaE PF02367.17 gi|389847577|ref|YP_006349816.1| - 0.13 12.3 0.1 9.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Epimerase PF01370.21 gi|389847576|ref|YP_006349815.1| - 4.1e-45 154.1 0.1 5e-45 153.8 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389847576|ref|YP_006349815.1| - 7e-42 144.0 0.7 4.1e-41 141.5 0.7 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|389847576|ref|YP_006349815.1| - 1.3e-13 50.7 0.1 1.5e-13 50.5 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|389847576|ref|YP_006349815.1| - 8.1e-10 38.2 0.0 1.3e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|389847576|ref|YP_006349815.1| - 2.1e-09 36.9 0.0 2.1e-06 27.1 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|389847576|ref|YP_006349815.1| - 1.7e-06 27.4 0.0 0.00047 19.4 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|389847576|ref|YP_006349815.1| - 0.046 13.2 0.6 0.67 9.4 0.1 2.5 1 1 0 2 2 2 0 short chain dehydrogenase TIM PF00121.18 gi|389847575|ref|YP_006349814.1| - 0.059 12.7 0.1 0.065 12.6 0.1 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase Phosphodiest PF01663.22 gi|389847574|ref|YP_006349813.1| - 7.4e-58 196.8 0.2 8.6e-58 196.6 0.2 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.9 gi|389847574|ref|YP_006349813.1| - 0.0042 17.3 0.1 0.0079 16.4 0.1 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain CARDB PF07705.11 gi|389847573|ref|YP_006349812.1| - 6.8e-07 29.5 22.2 0.00012 22.3 6.1 3.2 3 0 0 3 3 3 2 CARDB DUF3416 PF11896.8 gi|389847573|ref|YP_006349812.1| - 0.18 12.1 0.8 0.61 10.3 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) Cupredoxin_1 PF13473.6 gi|389847573|ref|YP_006349812.1| - 0.75 9.9 8.0 1.1 9.4 0.2 3.3 3 0 0 3 3 3 0 Cupredoxin-like domain DUF3244 PF11589.8 gi|389847571|ref|YP_006349810.1| - 0.94 9.6 8.0 0.71 10.0 0.1 4.3 4 0 0 4 4 4 0 Domain of unknown function (DUF3244) PGF-CTERM PF18204.1 gi|389847570|ref|YP_006349809.1| - 0.00013 21.9 7.3 0.00013 21.9 7.3 2.3 2 0 0 2 2 2 1 PGF-CTERM motif bMG3 PF11974.8 gi|389847570|ref|YP_006349809.1| - 0.00071 19.6 0.1 0.0015 18.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain Pollen_Ole_e_I PF01190.17 gi|389847570|ref|YP_006349809.1| - 0.031 14.7 0.0 0.071 13.5 0.0 1.6 1 0 0 1 1 1 0 Pollen proteins Ole e I like TTR-52 PF01060.23 gi|389847570|ref|YP_006349809.1| - 0.083 13.6 0.1 0.16 12.7 0.1 1.5 1 0 0 1 1 1 0 Transthyretin-like family GRP PF07172.11 gi|389847570|ref|YP_006349809.1| - 0.58 10.9 24.7 2 9.2 24.7 1.9 1 0 0 1 1 1 0 Glycine rich protein family Peptidase_S8 PF00082.22 gi|389847569|ref|YP_006349808.1| - 2.5e-43 148.5 4.4 4.7e-43 147.5 4.4 1.4 1 0 0 1 1 1 1 Subtilase family Dockerin_1 PF00404.18 gi|389847569|ref|YP_006349808.1| - 1.5e-09 37.9 1.6 3.4e-09 36.7 1.6 1.7 1 0 0 1 1 1 1 Dockerin type I domain TAT_signal PF10518.9 gi|389847569|ref|YP_006349808.1| - 0.0014 18.4 0.6 0.0043 16.8 0.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence EF-hand_6 PF13405.6 gi|389847569|ref|YP_006349808.1| - 0.0036 17.1 0.9 0.45 10.6 0.1 2.7 2 0 0 2 2 2 1 EF-hand domain UCR_Fe-S_N PF10399.9 gi|389847569|ref|YP_006349808.1| - 0.035 13.4 0.4 0.035 13.4 0.4 1.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EF-hand_7 PF13499.6 gi|389847569|ref|YP_006349808.1| - 0.18 12.2 1.1 3.5 8.1 0.1 2.3 1 1 0 1 1 1 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|389847569|ref|YP_006349808.1| - 0.44 10.2 3.1 6.5 6.5 0.2 2.9 2 0 0 2 2 2 0 EF hand NTP_transferase PF00483.23 gi|389847568|ref|YP_006349807.1| - 1.4e-44 152.5 0.0 2.1e-44 152.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389847568|ref|YP_006349807.1| - 5.9e-17 62.5 0.1 9.6e-17 61.8 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389847568|ref|YP_006349807.1| - 5.1e-10 38.7 14.3 0.00041 20.0 0.1 4.8 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|389847568|ref|YP_006349807.1| - 0.0083 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|389847568|ref|YP_006349807.1| - 0.41 10.4 5.6 4.2 7.2 0.8 3.6 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase Merozoite_SPAM PF07133.11 gi|389847567|ref|YP_006349806.1| - 0.98 9.4 19.9 2 8.4 19.9 1.5 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) DUF962 PF06127.11 gi|389847566|ref|YP_006349805.1| - 0.19 11.9 3.1 0.87 9.7 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF962) CPP1-like PF11833.8 gi|389847566|ref|YP_006349805.1| - 0.3 10.7 6.7 4.7 6.8 2.1 2.1 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like HTH_IclR PF09339.10 gi|389847565|ref|YP_006349804.1| - 0.0008 19.2 0.0 0.0019 18.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|389847565|ref|YP_006349804.1| - 0.0013 18.7 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|389847565|ref|YP_006349804.1| - 0.0063 16.6 0.1 0.017 15.2 0.0 1.7 2 0 0 2 2 2 1 DprA winged helix domain HTH_27 PF13463.6 gi|389847565|ref|YP_006349804.1| - 0.018 15.5 0.0 0.046 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TBCC_N PF16752.5 gi|389847565|ref|YP_006349804.1| - 0.027 14.9 3.1 0.052 14.0 2.1 1.9 1 1 1 2 2 2 0 Tubulin-specific chaperone C N-terminal domain MarR_2 PF12802.7 gi|389847565|ref|YP_006349804.1| - 0.027 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|389847565|ref|YP_006349804.1| - 0.029 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|389847565|ref|YP_006349804.1| - 0.048 13.3 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4363 PF14276.6 gi|389847565|ref|YP_006349804.1| - 0.14 12.3 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) NAD_binding_10 PF13460.6 gi|389847564|ref|YP_006349803.1| - 6.6e-16 58.7 0.0 2.3e-15 57.0 0.0 1.8 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|389847564|ref|YP_006349803.1| - 1.5e-11 44.3 0.0 4e-11 42.9 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|389847564|ref|YP_006349803.1| - 2.5e-10 40.2 0.0 2e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389847564|ref|YP_006349803.1| - 0.00022 20.4 0.0 0.00034 19.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|389847564|ref|YP_006349803.1| - 0.0088 15.5 0.0 0.083 12.3 0.0 2.3 3 0 0 3 3 3 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|389847564|ref|YP_006349803.1| - 0.043 13.0 0.0 5.8 6.0 0.0 2.7 3 0 0 3 3 3 0 Male sterility protein Semialdhyde_dh PF01118.24 gi|389847564|ref|YP_006349803.1| - 0.044 14.2 0.0 0.094 13.2 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|389847564|ref|YP_006349803.1| - 0.061 12.4 0.1 0.32 10.0 0.1 2.2 2 1 0 2 2 2 0 RmlD substrate binding domain PGM_PMM_I PF02878.16 gi|389847563|ref|YP_006349802.1| - 1.1e-34 119.1 0.0 1.9e-34 118.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|389847563|ref|YP_006349802.1| - 4.2e-22 78.7 0.1 9.7e-22 77.5 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|389847563|ref|YP_006349802.1| - 6.4e-19 68.2 0.0 1.6e-18 67.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|389847563|ref|YP_006349802.1| - 2.9e-12 46.6 0.4 7.2e-12 45.3 0.4 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain 5_nucleotid_C PF02872.18 gi|389847562|ref|YP_006349801.1| - 4.8e-30 104.9 0.4 1.6e-29 103.2 0.4 1.9 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Dockerin_1 PF00404.18 gi|389847562|ref|YP_006349801.1| - 4e-05 23.7 7.4 4e-05 23.7 7.4 3.3 2 1 1 3 3 3 1 Dockerin type I domain EF-hand_1 PF00036.32 gi|389847562|ref|YP_006349801.1| - 4 7.2 7.1 19 5.1 0.3 3.7 3 0 0 3 3 3 0 EF hand EF-hand_6 PF13405.6 gi|389847562|ref|YP_006349801.1| - 6 7.1 4.9 8.1 6.7 0.1 3.3 2 1 1 3 3 3 0 EF-hand domain Trypan_PARP PF05887.11 gi|389847561|ref|YP_006349800.1| - 0.049 13.6 1.2 0.13 12.3 1.2 1.8 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) SOG2 PF10428.9 gi|389847561|ref|YP_006349800.1| - 0.92 8.6 4.5 1 8.4 4.5 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein PRC PF05239.16 gi|389847559|ref|YP_006349798.1| - 1.6e-10 40.9 0.1 1.9e-10 40.7 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Pentapeptide_3 PF13576.6 gi|389847557|ref|YP_006349796.1| - 6.8e-21 74.2 32.0 1.3e-06 28.5 1.2 7.2 6 1 1 7 7 7 7 Pentapeptide repeats (9 copies) YceI PF04264.13 gi|389847557|ref|YP_006349796.1| - 0.00042 20.9 2.3 0.011 16.3 1.1 2.6 1 1 1 2 2 2 1 YceI-like domain O_anti_polymase PF01901.16 gi|389847556|ref|YP_006349795.1| - 0.0098 15.2 1.0 0.014 14.7 1.0 1.1 1 0 0 1 1 1 1 Putative O-antigen polymerase DUF1206 PF06724.11 gi|389847556|ref|YP_006349795.1| - 0.31 11.1 0.2 0.31 11.1 0.2 4.1 4 0 0 4 4 4 0 Domain of Unknown Function (DUF1206) DUF4407 PF14362.6 gi|389847556|ref|YP_006349795.1| - 0.81 9.0 3.5 1.9 7.8 1.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) OATP PF03137.20 gi|389847555|ref|YP_006349794.1| - 0.17 10.2 0.3 0.18 10.0 0.3 1.1 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family RTX PF02382.15 gi|389847554|ref|YP_006349793.1| - 2.4 7.8 6.7 3.8 7.1 6.7 1.2 1 0 0 1 1 1 0 N-terminal domain in RTX protein FtsA PF14450.6 gi|389847553|ref|YP_006349792.1| - 4.9e-05 23.7 0.0 0.00029 21.2 0.0 2.0 2 0 0 2 2 2 1 Cell division protein FtsA Glypican PF01153.19 gi|389847553|ref|YP_006349792.1| - 0.0005 19.0 3.1 0.00064 18.7 3.1 1.1 1 0 0 1 1 1 1 Glypican Actin PF00022.19 gi|389847553|ref|YP_006349792.1| - 0.01 14.4 0.0 0.3 9.6 0.0 2.3 2 0 0 2 2 2 0 Actin Apt1 PF10351.9 gi|389847553|ref|YP_006349792.1| - 0.23 10.3 9.2 0.3 9.9 9.2 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF4512 PF14975.6 gi|389847553|ref|YP_006349792.1| - 1.1 10.1 4.4 62 4.5 5.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4512) NPR3 PF03666.13 gi|389847553|ref|YP_006349792.1| - 2 7.1 11.8 2.6 6.7 11.8 1.1 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Transformer PF06495.11 gi|389847553|ref|YP_006349792.1| - 2.8 8.0 10.9 4.9 7.2 10.9 1.3 1 0 0 1 1 1 0 Fruit fly transformer protein BPS1 PF05633.11 gi|389847553|ref|YP_006349792.1| - 3.4 6.6 7.3 5.2 6.0 7.3 1.2 1 0 0 1 1 1 0 Protein BYPASS1-related Dsh_C PF12316.8 gi|389847553|ref|YP_006349792.1| - 5.4 7.4 17.8 8.2 6.8 17.8 1.3 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal zf-FPG_IleRS PF06827.14 gi|389847552|ref|YP_006349791.1| - 3e-06 27.0 0.9 5.6e-06 26.1 0.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|389847552|ref|YP_006349791.1| - 0.00026 20.2 1.2 0.00026 20.2 1.2 1.5 2 0 0 2 2 2 1 Transcription factor zinc-finger DUF2387 PF09526.10 gi|389847552|ref|YP_006349791.1| - 0.0042 17.2 0.8 0.0052 16.9 0.8 1.2 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf_UBZ PF18439.1 gi|389847552|ref|YP_006349791.1| - 0.0067 16.0 0.9 0.4 10.3 0.1 2.4 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|389847552|ref|YP_006349791.1| - 0.0075 16.3 1.8 0.095 12.8 1.8 2.2 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|389847552|ref|YP_006349791.1| - 0.067 13.2 0.7 0.067 13.2 0.7 1.5 2 0 0 2 2 2 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|389847552|ref|YP_006349791.1| - 0.15 12.5 2.8 0.28 11.6 2.7 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Tubulin PF00091.25 gi|662859522|ref|YP_006349790.2| - 5.7e-27 95.2 0.0 8.5e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|662859522|ref|YP_006349790.2| - 0.0023 17.2 0.1 0.0055 15.9 0.1 1.5 1 1 1 2 2 2 1 Tubulin like Response_reg PF00072.24 gi|662859521|ref|YP_006349789.2| - 0.00015 21.9 0.0 0.00022 21.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF2608 PF11019.8 gi|389847549|ref|YP_006349788.1| - 0.11 12.0 0.1 0.13 11.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) PAXNEB PF05625.11 gi|389847548|ref|YP_006349787.1| - 0.016 14.3 0.1 0.021 14.0 0.1 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF3646 PF12362.8 gi|389847548|ref|YP_006349787.1| - 0.079 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III gamma and tau subunits C terminal HalOD1 PF18545.1 gi|389847547|ref|YP_006349786.1| - 1.1e-15 57.6 0.3 1.4e-15 57.2 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 KfrA_N PF11740.8 gi|389847546|ref|YP_006349785.1| - 0.045 14.4 1.4 0.069 13.8 1.4 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term ATPase PF06745.13 gi|389847546|ref|YP_006349785.1| - 0.098 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 KaiC HTH_45 PF14947.6 gi|389847545|ref|YP_006349784.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|389847545|ref|YP_006349784.1| - 0.051 13.2 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|389847545|ref|YP_006349784.1| - 0.063 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|389847545|ref|YP_006349784.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF5591 PF17884.1 gi|389847543|ref|YP_006349782.1| - 4.5e-59 198.7 0.5 6.7e-59 198.2 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|389847543|ref|YP_006349782.1| - 4.9e-21 74.6 0.0 1.4e-20 73.2 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|389847543|ref|YP_006349782.1| - 2.2e-12 46.8 0.4 5.6e-12 45.5 0.4 1.6 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|389847543|ref|YP_006349782.1| - 3.1e-10 39.8 0.0 2.8e-09 36.6 0.1 2.4 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase PQQ_2 PF13360.6 gi|389847542|ref|YP_006349781.1| - 6.2e-17 62.0 6.7 1.9e-14 53.8 5.0 2.4 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|389847542|ref|YP_006349781.1| - 3.5e-09 36.9 14.9 0.51 10.9 0.4 7.2 7 0 0 7 7 7 4 PQQ-like domain PQQ PF01011.21 gi|389847542|ref|YP_006349781.1| - 0.0029 17.4 5.1 4 7.5 0.1 5.4 5 0 0 5 5 5 1 PQQ enzyme repeat PAS_7 PF12860.7 gi|389847540|ref|YP_006349779.1| - 2.4e-12 47.0 3.9 0.072 13.3 0.0 5.3 5 0 0 5 5 5 5 PAS fold PGF-CTERM PF18204.1 gi|389847540|ref|YP_006349779.1| - 8.2e-05 22.4 9.6 0.00017 21.4 9.6 1.6 1 0 0 1 1 1 1 PGF-CTERM motif PrcB_C PF14343.6 gi|389847540|ref|YP_006349779.1| - 0.0014 18.7 8.4 0.16 12.2 0.1 5.1 5 1 0 5 5 5 1 PrcB C-terminal DUF2471 PF10616.9 gi|389847540|ref|YP_006349779.1| - 0.066 13.8 0.0 15 6.2 0.0 4.0 5 0 0 5 5 5 0 Protein of unknown function (DUF2471) FLgD_tudor PF13861.6 gi|389847540|ref|YP_006349779.1| - 0.087 13.1 5.1 0.28 11.5 0.1 3.8 2 1 1 3 3 3 0 FlgD Tudor-like domain Hexapep PF00132.24 gi|389847539|ref|YP_006349778.1| - 2.8e-12 45.9 4.6 5.1e-07 29.2 1.7 2.9 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|389847539|ref|YP_006349778.1| - 5.8e-05 23.4 0.0 0.0001 22.6 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|389847539|ref|YP_006349778.1| - 0.0021 17.8 1.6 0.0021 17.8 1.6 2.7 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase HTH_5 PF01022.20 gi|389847537|ref|YP_006349776.1| - 3.6e-10 39.6 0.0 4.3e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|389847537|ref|YP_006349776.1| - 1.9e-06 27.9 0.0 2.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|389847537|ref|YP_006349776.1| - 7.2e-05 22.7 0.0 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|389847537|ref|YP_006349776.1| - 0.00083 19.2 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389847537|ref|YP_006349776.1| - 0.0016 18.0 0.0 0.004 16.7 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|389847537|ref|YP_006349776.1| - 0.014 15.8 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Phage_rep_org_N PF09681.10 gi|389847537|ref|YP_006349776.1| - 0.071 13.0 0.0 0.072 13.0 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TFIIE_alpha PF02002.17 gi|389847537|ref|YP_006349776.1| - 0.074 12.9 0.0 0.075 12.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Rio2_N PF09202.11 gi|389847537|ref|YP_006349776.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal MarR_2 PF12802.7 gi|389847537|ref|YP_006349776.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 MarR family TGT PF01702.18 gi|389847536|ref|YP_006349775.1| - 3.1e-78 263.4 0.0 4.2e-78 263.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|389847536|ref|YP_006349775.1| - 0.021 15.1 0.0 1.6 9.1 0.0 2.6 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation ThiS-like PF14453.6 gi|389847536|ref|YP_006349775.1| - 0.18 11.9 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 ThiS-like ubiquitin 7TMR-DISM_7TM PF07695.11 gi|389847535|ref|YP_006349774.1| - 0.0041 17.0 0.4 0.0046 16.9 0.4 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling PGPGW PF09656.10 gi|389847535|ref|YP_006349774.1| - 8.1 6.0 8.3 8.8 5.9 0.8 2.7 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) MCPsignal PF00015.21 gi|389847534|ref|YP_006349773.1| - 1.6e-40 138.7 26.2 1.6e-40 138.7 26.2 4.3 1 1 3 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|389847534|ref|YP_006349773.1| - 8.9e-05 22.7 39.0 0.16 12.2 3.8 6.3 4 2 1 5 5 5 3 Bacterial protein of unknown function (DUF948) FPP PF05911.11 gi|389847534|ref|YP_006349773.1| - 0.0082 14.4 40.8 0.011 14.0 40.8 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil ZapB PF06005.12 gi|389847534|ref|YP_006349773.1| - 0.017 15.6 0.7 0.017 15.6 0.7 5.4 2 1 4 6 6 6 0 Cell division protein ZapB RPW8 PF05659.11 gi|389847534|ref|YP_006349773.1| - 0.023 14.4 24.2 0.65 9.7 0.1 6.0 3 3 3 7 7 7 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 H-kinase_dim PF02895.14 gi|389847534|ref|YP_006349773.1| - 0.048 14.1 1.0 0.048 14.1 1.0 5.4 3 2 0 3 3 2 0 Signal transducing histidine kinase, homodimeric domain FlgN PF05130.12 gi|389847534|ref|YP_006349773.1| - 0.1 13.1 38.5 0.33 11.5 0.4 4.9 2 1 3 5 5 5 0 FlgN protein Laminin_II PF06009.12 gi|389847534|ref|YP_006349773.1| - 0.12 12.4 48.0 0.4 10.7 3.7 4.6 2 2 2 4 4 4 0 Laminin Domain II BLOC1_2 PF10046.9 gi|389847534|ref|YP_006349773.1| - 0.15 12.4 44.9 0.082 13.2 3.2 6.4 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG17 PF04108.12 gi|389847534|ref|YP_006349773.1| - 0.19 10.8 39.3 0.05 12.7 7.7 4.2 1 1 3 4 4 4 0 Autophagy protein Apg17 EzrA PF06160.12 gi|389847534|ref|YP_006349773.1| - 0.34 9.0 40.3 0.64 8.1 13.1 3.6 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA Spc7 PF08317.11 gi|389847534|ref|YP_006349773.1| - 0.9 8.4 51.8 0.04 12.8 14.7 4.0 2 2 2 4 4 4 0 Spc7 kinetochore protein DUF1843 PF08898.10 gi|389847534|ref|YP_006349773.1| - 1.2 9.7 13.5 3.7 8.1 0.5 5.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1843) PMC2NT PF08066.12 gi|389847534|ref|YP_006349773.1| - 1.8 9.3 34.2 1.2 9.9 3.2 5.8 2 2 5 7 7 7 0 PMC2NT (NUC016) domain AIP3 PF03915.13 gi|389847534|ref|YP_006349773.1| - 2 7.4 40.9 1.6 7.7 13.3 2.5 1 1 1 2 2 2 0 Actin interacting protein 3 Mod_r PF07200.13 gi|389847534|ref|YP_006349773.1| - 2 8.5 43.6 0.37 10.9 4.9 4.9 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein DUF2203 PF09969.9 gi|389847534|ref|YP_006349773.1| - 2.1 9.1 39.1 0.9 10.3 5.0 4.7 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Mce4_CUP1 PF11887.8 gi|389847534|ref|YP_006349773.1| - 2.4 7.6 21.2 0.88 9.0 2.9 3.5 2 2 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF1664 PF07889.12 gi|389847534|ref|YP_006349773.1| - 2.8 8.0 43.0 0.61 10.1 4.1 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Pex24p PF06398.11 gi|389847534|ref|YP_006349773.1| - 4.8 6.1 5.2 11 4.9 0.6 2.5 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin V_ATPase_I PF01496.19 gi|389847534|ref|YP_006349773.1| - 5.1 4.9 33.7 0.12 10.3 12.3 2.4 2 1 0 2 2 2 0 V-type ATPase 116kDa subunit family HAMP PF00672.25 gi|389847534|ref|YP_006349773.1| - 5.6 7.4 12.5 0.64 10.4 0.9 4.5 4 1 0 4 4 3 0 HAMP domain HBM PF16591.5 gi|389847534|ref|YP_006349773.1| - 8.9 5.7 42.1 0.3 10.5 9.0 4.2 1 1 3 4 4 4 0 Helical bimodular sensor domain Cupin_2 PF07883.11 gi|662859520|ref|YP_006349772.2| - 6.9e-14 51.3 0.0 1.2e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|662859520|ref|YP_006349772.2| - 8.9e-07 28.5 0.0 1.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|662859520|ref|YP_006349772.2| - 0.007 16.3 0.0 0.0094 15.9 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CitMHS PF03600.16 gi|662859519|ref|YP_006349771.2| - 9.1e-65 218.8 5.5 9.1e-65 218.8 5.5 1.7 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|662859519|ref|YP_006349771.2| - 2.8e-22 79.4 38.2 1.1e-16 60.9 17.9 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|662859519|ref|YP_006349771.2| - 1.1e-18 66.8 1.8 1.9e-11 43.6 0.2 2.6 2 0 0 2 2 2 2 TrkA-C domain CPBP PF02517.16 gi|389847531|ref|YP_006349770.1| - 5.9e-16 58.6 1.6 5.9e-16 58.6 1.6 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease NUDIX PF00293.28 gi|389847530|ref|YP_006349769.1| - 6.1e-12 45.7 0.3 7.6e-12 45.4 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain FliD_C PF07195.12 gi|389847529|ref|YP_006349768.1| - 0.0084 15.6 0.0 0.8 9.1 0.0 2.2 2 0 0 2 2 2 2 Flagellar hook-associated protein 2 C-terminus DUF3053 PF11254.8 gi|389847529|ref|YP_006349768.1| - 0.11 12.1 0.0 0.69 9.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3053) NPV_P10 PF05531.12 gi|389847529|ref|YP_006349768.1| - 0.17 12.4 0.0 2.7 8.5 0.0 2.5 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Peptidase_S49_N PF08496.10 gi|389847529|ref|YP_006349768.1| - 0.21 11.7 0.1 0.32 11.0 0.1 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Methyltransf_25 PF13649.6 gi|389847528|ref|YP_006349767.1| - 1.6e-13 51.1 0.0 2.4e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389847528|ref|YP_006349767.1| - 5.3e-11 43.0 0.0 7.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389847528|ref|YP_006349767.1| - 4.5e-10 39.6 0.0 5.8e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|389847528|ref|YP_006349767.1| - 3.4e-06 26.8 0.0 5.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|389847528|ref|YP_006349767.1| - 4.8e-06 26.4 0.0 5.4e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389847528|ref|YP_006349767.1| - 9.2e-06 26.3 0.0 1.4e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|389847528|ref|YP_006349767.1| - 0.0035 16.8 0.0 0.0044 16.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Pox_MCEL PF03291.16 gi|389847528|ref|YP_006349767.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 mRNA capping enzyme Peripla_BP_2 PF01497.18 gi|389847527|ref|YP_006349766.1| - 9.1e-25 87.6 0.0 1.4e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389847527|ref|YP_006349766.1| - 0.092 12.6 1.9 0.16 11.9 1.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|389847527|ref|YP_006349766.1| - 0.12 12.4 5.9 0.19 11.7 5.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) CSD PF00313.22 gi|389847526|ref|YP_006349765.1| - 4.9e-19 67.9 0.0 5.4e-19 67.8 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|389847526|ref|YP_006349765.1| - 0.045 13.4 2.8 0.063 13.0 2.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|389847526|ref|YP_006349765.1| - 0.091 12.6 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|389847526|ref|YP_006349765.1| - 0.099 12.6 0.3 0.13 12.2 0.3 1.3 1 1 0 1 1 1 0 S1-like DUF2268 PF10026.9 gi|389847524|ref|YP_006349763.1| - 0.00018 21.2 0.0 0.00073 19.2 0.0 2.0 2 1 0 2 2 2 1 Predicted Zn-dependent protease (DUF2268) Peptidase_M48 PF01435.18 gi|389847524|ref|YP_006349763.1| - 0.00061 19.6 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 SprT-like PF10263.9 gi|389847524|ref|YP_006349763.1| - 0.0014 18.4 0.0 0.0034 17.2 0.0 1.7 1 0 0 1 1 1 1 SprT-like family Peptidase_M9 PF01752.17 gi|389847524|ref|YP_006349763.1| - 0.009 15.3 0.0 0.02 14.1 0.1 1.5 2 0 0 2 2 2 1 Collagenase Abhydrolase_6 PF12697.7 gi|389847523|ref|YP_006349762.1| - 3.5e-19 70.3 0.7 4.6e-19 69.9 0.7 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389847523|ref|YP_006349762.1| - 9.9e-17 61.4 0.0 1.1e-15 57.9 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389847523|ref|YP_006349762.1| - 2e-12 46.9 0.1 5.4e-12 45.5 0.1 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|389847523|ref|YP_006349762.1| - 0.0068 16.5 0.0 0.011 15.9 0.0 1.4 1 1 0 1 1 1 1 Thioesterase domain Methyltrn_RNA_2 PF04013.12 gi|389847522|ref|YP_006349761.1| - 8.3e-67 224.7 0.0 9.3e-67 224.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase ABC2_membrane PF01061.24 gi|389847521|ref|YP_006349760.1| - 2.1e-32 112.3 16.5 2.6e-32 111.9 16.5 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|389847521|ref|YP_006349760.1| - 0.00032 19.9 18.0 0.00041 19.6 18.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389847520|ref|YP_006349759.1| - 3.2e-30 105.4 0.0 4.6e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847520|ref|YP_006349759.1| - 4.5e-14 52.9 3.0 8.3e-09 35.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389847520|ref|YP_006349759.1| - 1.9e-06 28.5 0.0 3.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) NTPase_1 PF03266.15 gi|389847520|ref|YP_006349759.1| - 0.0024 17.8 0.5 0.91 9.4 0.0 3.0 3 0 0 3 3 3 1 NTPase AAA_23 PF13476.6 gi|389847520|ref|YP_006349759.1| - 0.0025 18.4 0.0 0.0037 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|389847520|ref|YP_006349759.1| - 0.0029 17.4 0.0 1.9 8.1 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|389847520|ref|YP_006349759.1| - 0.0078 16.0 0.0 0.064 13.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain DLIC PF05783.11 gi|389847520|ref|YP_006349759.1| - 0.079 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_29 PF13555.6 gi|389847520|ref|YP_006349759.1| - 0.095 12.5 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389847520|ref|YP_006349759.1| - 0.21 11.0 0.0 2.5 7.5 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PEP_mutase PF13714.6 gi|389847519|ref|YP_006349758.1| - 1.2e-39 136.3 0.0 1.5e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|389847519|ref|YP_006349758.1| - 1.2e-30 106.5 2.6 1.1e-14 53.8 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family HpcH_HpaI PF03328.14 gi|389847518|ref|YP_006349757.1| - 1.3e-07 31.0 0.0 4e-07 29.4 0.0 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF4112 PF13430.6 gi|389847517|ref|YP_006349756.1| - 3.8e-34 117.1 0.0 6.7e-34 116.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) TAT_signal PF10518.9 gi|389847516|ref|YP_006349755.1| - 4.9e-05 23.0 2.0 8.4e-05 22.2 2.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GbpA_2 PF18416.1 gi|389847516|ref|YP_006349755.1| - 0.021 15.1 0.6 0.021 15.1 0.6 2.6 2 1 1 3 3 3 0 N-acetylglucosamine binding protein domain 2 CytB6-F_Fe-S PF08802.10 gi|389847516|ref|YP_006349755.1| - 0.19 11.8 0.5 0.51 10.4 0.5 1.7 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit OrfB_Zn_ribbon PF07282.11 gi|389847515|ref|YP_006349754.1| - 1.4e-21 76.1 0.0 6e-21 74.2 0.0 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|389847515|ref|YP_006349754.1| - 2.7e-18 66.3 0.5 5.4e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 Probable transposase Rubredoxin_2 PF18073.1 gi|389847515|ref|YP_006349754.1| - 0.018 14.7 2.2 0.05 13.3 2.2 1.8 1 1 0 1 1 1 0 Rubredoxin metal binding domain Zn_Tnp_IS91 PF14319.6 gi|389847515|ref|YP_006349754.1| - 0.058 13.4 0.5 0.19 11.8 0.5 1.8 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|389847515|ref|YP_006349754.1| - 0.11 12.5 0.1 0.25 11.4 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|389847515|ref|YP_006349754.1| - 0.13 11.7 2.3 1.9 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|389847515|ref|YP_006349754.1| - 0.17 12.0 0.9 0.31 11.1 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon MazE_antitoxin PF04014.18 gi|389847514|ref|YP_006349753.1| - 6.6e-08 32.3 0.5 7.3e-08 32.2 0.5 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|389847514|ref|YP_006349753.1| - 0.00012 22.4 0.0 0.00014 22.2 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin CDC48_N PF02359.18 gi|389847514|ref|YP_006349753.1| - 0.013 15.6 0.0 0.015 15.5 0.0 1.0 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF4131 PF13567.6 gi|389847514|ref|YP_006349753.1| - 0.16 11.6 0.0 0.18 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) EamA PF00892.20 gi|389847513|ref|YP_006349752.1| - 1e-38 132.6 32.1 6.1e-20 71.8 15.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|389847513|ref|YP_006349752.1| - 0.14 12.2 4.1 1 9.4 0.8 2.9 3 0 0 3 3 3 0 Putative transmembrane family 234 THUMP PF02926.17 gi|389847512|ref|YP_006349751.1| - 2.4e-08 34.2 0.0 4.2e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|389847512|ref|YP_006349751.1| - 0.00074 19.8 0.2 0.00074 19.8 0.2 2.8 2 1 0 2 2 2 1 DnaJ central domain RNase_HII PF01351.18 gi|389847511|ref|YP_006349750.1| - 2.1e-38 132.2 0.1 2.4e-38 132.0 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.16 gi|389847509|ref|YP_006349748.1| - 4.9e-14 52.1 5.0 1e-13 51.1 5.0 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|389847509|ref|YP_006349748.1| - 0.0002 20.4 11.2 0.00041 19.4 11.2 1.4 1 0 0 1 1 1 1 MMPL family Sterol-sensing PF12349.8 gi|389847509|ref|YP_006349748.1| - 0.00085 19.2 1.6 0.0018 18.1 1.6 1.5 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation MGC-24 PF05283.11 gi|389847509|ref|YP_006349748.1| - 0.057 13.9 0.3 0.17 12.3 0.0 2.0 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin SecD_SecF PF02355.16 gi|389847508|ref|YP_006349747.1| - 1.6e-27 96.1 14.8 1.6e-27 96.1 14.8 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|389847508|ref|YP_006349747.1| - 0.00019 20.8 0.0 0.00055 19.3 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|389847508|ref|YP_006349747.1| - 0.049 11.7 14.4 0.065 11.3 14.4 1.1 1 0 0 1 1 1 0 Patched family Acetyltransf_1 PF00583.25 gi|389847505|ref|YP_006349744.1| - 5.1e-09 36.4 0.0 6.9e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389847505|ref|YP_006349744.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847505|ref|YP_006349744.1| - 1.8e-05 24.6 0.0 3.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|389847505|ref|YP_006349744.1| - 0.00015 22.1 0.0 0.00024 21.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389847505|ref|YP_006349744.1| - 0.00098 19.8 0.0 0.0013 19.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389847505|ref|YP_006349744.1| - 0.0021 18.1 0.1 0.007 16.5 0.0 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|389847505|ref|YP_006349744.1| - 0.0036 17.3 0.0 0.008 16.1 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_9 PF13527.7 gi|389847505|ref|YP_006349744.1| - 0.014 15.4 0.1 0.06 13.4 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain COX4_pro_2 PF07835.12 gi|389847505|ref|YP_006349744.1| - 0.13 12.4 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial aa3 type cytochrome c oxidase subunit IV CDP-OH_P_transf PF01066.21 gi|389847504|ref|YP_006349743.1| - 6e-10 39.8 0.3 6e-10 39.8 0.3 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PHP_C PF13263.6 gi|389847503|ref|YP_006349742.1| - 3.9e-20 71.4 0.2 1.5e-19 69.5 0.2 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|389847503|ref|YP_006349742.1| - 1.7e-05 25.2 0.0 2e-05 25.0 0.0 1.3 1 1 0 1 1 1 1 PHP domain SNARE_assoc PF09335.11 gi|389847502|ref|YP_006349741.1| - 2.2e-24 86.3 4.7 2.2e-24 86.3 4.7 2.0 3 0 0 3 3 3 1 SNARE associated Golgi protein HlyIII PF03006.20 gi|389847501|ref|YP_006349740.1| - 0.08 12.6 3.3 0.08 12.6 2.7 1.4 1 1 0 1 1 1 0 Haemolysin-III related Yip1 PF04893.17 gi|389847501|ref|YP_006349740.1| - 0.69 9.6 16.9 1.2 8.8 16.9 1.5 1 1 0 1 1 1 0 Yip1 domain ABC2_membrane_3 PF12698.7 gi|389847501|ref|YP_006349740.1| - 3 6.9 7.1 4 6.5 7.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PGI PF00342.19 gi|662859518|ref|YP_006349739.2| - 3.2e-30 105.1 0.0 1.3e-26 93.3 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase Methyltransf_30 PF05430.11 gi|662859518|ref|YP_006349739.2| - 0.18 11.7 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase CPBP PF02517.16 gi|389847499|ref|YP_006349738.1| - 1.1e-16 60.9 7.1 1.1e-16 60.9 7.1 2.0 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease UCR_Fe-S_N PF10399.9 gi|389847499|ref|YP_006349738.1| - 0.038 13.4 0.2 0.038 13.4 0.2 2.8 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PIN_6 PF17146.4 gi|389847498|ref|YP_006349737.1| - 4.3e-10 40.0 0.0 9.3e-10 38.9 0.0 1.5 2 0 0 2 2 1 1 PIN domain of ribonuclease HypA PF01155.19 gi|389847498|ref|YP_006349737.1| - 0.0011 19.0 0.1 0.0017 18.4 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_5 PF08745.11 gi|389847498|ref|YP_006349737.1| - 0.0014 18.1 0.5 0.0021 17.5 0.5 1.3 1 0 0 1 1 1 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|389847498|ref|YP_006349737.1| - 0.0018 18.4 1.4 0.0045 17.1 1.4 1.6 1 0 0 1 1 1 1 Zinc ribbon domain DUF4411 PF14367.6 gi|389847498|ref|YP_006349737.1| - 0.0037 17.2 0.1 0.011 15.7 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) C1_2 PF03107.16 gi|389847498|ref|YP_006349737.1| - 0.011 16.1 0.2 0.017 15.4 0.2 1.4 1 0 0 1 1 1 0 C1 domain Mut7-C PF01927.16 gi|389847498|ref|YP_006349737.1| - 0.014 15.5 0.1 0.018 15.1 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C3HC4_3 PF13920.6 gi|389847498|ref|YP_006349737.1| - 0.015 15.2 0.9 0.021 14.7 0.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.12 gi|389847498|ref|YP_006349737.1| - 0.015 15.3 0.6 0.024 14.6 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_15 PF17032.5 gi|389847498|ref|YP_006349737.1| - 0.016 15.9 0.2 0.021 15.5 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon family DZR PF12773.7 gi|389847498|ref|YP_006349737.1| - 0.021 14.8 0.3 0.031 14.3 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.26 gi|389847498|ref|YP_006349737.1| - 0.036 14.5 1.7 3.6 8.2 0.3 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type DUF2710 PF10921.8 gi|389847498|ref|YP_006349737.1| - 0.038 14.4 0.1 0.056 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) Rad50_zn_hook PF04423.14 gi|389847498|ref|YP_006349737.1| - 0.042 13.7 0.8 0.34 10.8 0.5 2.4 1 1 1 2 2 2 0 Rad50 zinc hook motif Prok-RING_1 PF14446.6 gi|389847498|ref|YP_006349737.1| - 0.056 13.4 1.2 0.11 12.4 1.2 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2_4 PF13894.6 gi|389847498|ref|YP_006349737.1| - 0.059 14.2 1.1 9.1 7.4 0.2 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger PIN PF01850.21 gi|389847498|ref|YP_006349737.1| - 0.098 13.2 1.4 0.33 11.5 0.6 1.9 1 1 1 2 2 2 0 PIN domain NOB1_Zn_bind PF08772.11 gi|389847498|ref|YP_006349737.1| - 0.11 12.6 0.9 0.21 11.8 0.9 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_4 PF14447.6 gi|389847498|ref|YP_006349737.1| - 0.12 12.3 1.7 0.2 11.6 1.7 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-C3HC4_2 PF13923.6 gi|389847498|ref|YP_006349737.1| - 0.4 10.6 2.5 0.69 9.8 2.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC_2 PF13913.6 gi|389847498|ref|YP_006349737.1| - 0.87 9.6 8.6 0.27 11.2 3.7 2.2 1 1 1 2 2 2 0 zinc-finger of a C2HC-type PRC PF05239.16 gi|389847497|ref|YP_006349736.1| - 1.1e-09 38.3 0.0 1.2e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.27 gi|389847496|ref|YP_006349735.1| - 6.7e-31 107.3 0.0 4.7e-30 104.6 0.0 2.2 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|389847496|ref|YP_006349735.1| - 2.2e-24 85.1 0.1 5.4e-24 83.9 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|389847496|ref|YP_006349735.1| - 1.5e-23 82.9 0.6 4e-23 81.5 0.6 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|389847496|ref|YP_006349735.1| - 1e-13 51.4 8.4 5e-11 42.8 0.5 3.2 2 1 1 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|389847496|ref|YP_006349735.1| - 1.7e-08 34.6 0.3 7.1e-08 32.5 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|389847496|ref|YP_006349735.1| - 0.00019 21.6 0.1 0.25 11.4 0.0 2.6 1 1 1 2 2 2 2 Dynamin family Roc PF08477.13 gi|389847496|ref|YP_006349735.1| - 0.0067 16.6 0.0 0.021 15.0 0.0 1.9 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|389847496|ref|YP_006349735.1| - 0.025 14.4 0.0 0.07 12.9 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|389847496|ref|YP_006349735.1| - 0.04 13.5 0.0 0.12 11.9 0.0 1.8 1 1 0 1 1 1 0 Ras family EssA PF10661.9 gi|389847496|ref|YP_006349735.1| - 0.06 13.2 0.2 0.14 12.0 0.2 1.5 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA PEP-CTERM PF07589.11 gi|389847495|ref|YP_006349734.1| - 0.25 11.5 5.9 0.24 11.6 2.2 2.2 1 1 1 2 2 2 0 PEP-CTERM motif PGPGW PF09656.10 gi|389847495|ref|YP_006349734.1| - 0.28 10.7 5.3 0.36 10.4 5.3 1.2 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) Chisel PF15355.6 gi|389847494|ref|YP_006349733.1| - 0.059 13.6 0.1 0.15 12.3 0.0 1.7 2 0 0 2 2 2 0 Stretch-responsive small skeletal muscle X protein, Chisel HATPase_c PF02518.26 gi|662859517|ref|YP_006349732.2| - 4.7e-13 49.6 0.1 1.3e-12 48.2 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|662859517|ref|YP_006349732.2| - 3.6e-10 39.9 0.3 7.4e-10 38.9 0.2 1.5 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|662859517|ref|YP_006349732.2| - 0.0026 17.6 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|662859517|ref|YP_006349732.2| - 0.0035 17.4 0.3 0.0073 16.3 0.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|662859517|ref|YP_006349732.2| - 0.016 14.8 0.1 0.035 13.7 0.1 1.6 1 1 0 1 1 1 0 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|662859517|ref|YP_006349732.2| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PvlArgDC PF01862.16 gi|389847492|ref|YP_006349731.1| - 1.6e-34 119.0 0.2 1.8e-34 118.9 0.2 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.29 gi|662859516|ref|YP_006349730.2| - 8.9e-46 155.6 0.5 1e-44 152.2 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|662859516|ref|YP_006349730.2| - 1.6e-12 47.0 0.7 4.4e-12 45.6 0.7 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|662859516|ref|YP_006349730.2| - 2.5e-08 34.2 0.1 6e-08 33.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|662859516|ref|YP_006349730.2| - 1.1e-07 31.9 2.3 5e-07 29.8 0.1 2.8 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|662859516|ref|YP_006349730.2| - 1.7e-07 31.1 0.2 1.2e-06 28.4 0.0 2.3 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|662859516|ref|YP_006349730.2| - 4.9e-07 30.3 1.5 0.0011 19.4 0.0 3.0 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|662859516|ref|YP_006349730.2| - 9.3e-06 26.0 3.3 0.0013 19.0 0.3 3.3 2 1 0 2 2 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|662859516|ref|YP_006349730.2| - 3.5e-05 23.7 0.0 0.0001 22.2 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|662859516|ref|YP_006349730.2| - 8.3e-05 21.9 0.1 0.00019 20.7 0.0 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|662859516|ref|YP_006349730.2| - 0.0002 21.4 0.1 0.002 18.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|662859516|ref|YP_006349730.2| - 0.00034 21.2 0.1 0.0021 18.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|662859516|ref|YP_006349730.2| - 0.00036 19.9 0.1 0.0012 18.1 0.0 1.9 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|662859516|ref|YP_006349730.2| - 0.00057 20.2 0.3 0.013 15.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|662859516|ref|YP_006349730.2| - 0.0019 17.6 0.6 0.0039 16.6 0.0 1.8 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI Prot_ATP_OB_N PF17758.1 gi|662859516|ref|YP_006349730.2| - 0.0021 17.6 0.0 0.0065 16.1 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain NTPase_1 PF03266.15 gi|662859516|ref|YP_006349730.2| - 0.0022 17.9 0.9 0.089 12.7 0.0 2.7 3 0 0 3 3 3 1 NTPase IstB_IS21 PF01695.17 gi|662859516|ref|YP_006349730.2| - 0.0022 17.7 0.0 0.0065 16.2 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|662859516|ref|YP_006349730.2| - 0.0027 17.5 0.1 0.0069 16.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|662859516|ref|YP_006349730.2| - 0.0044 16.7 0.1 0.037 13.7 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|662859516|ref|YP_006349730.2| - 0.0049 17.3 1.7 0.016 15.6 0.1 2.5 2 2 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|662859516|ref|YP_006349730.2| - 0.0054 17.1 0.0 0.025 15.0 0.0 2.1 2 0 0 2 2 2 1 RNA helicase TsaE PF02367.17 gi|662859516|ref|YP_006349730.2| - 0.0085 16.1 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|662859516|ref|YP_006349730.2| - 0.0094 15.2 0.0 0.047 12.9 0.0 2.1 1 1 0 1 1 1 1 NB-ARC domain AAA_33 PF13671.6 gi|662859516|ref|YP_006349730.2| - 0.01 16.0 0.1 0.033 14.3 0.0 2.0 2 0 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|662859516|ref|YP_006349730.2| - 0.011 15.7 0.0 0.088 12.7 0.0 2.2 1 1 1 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|662859516|ref|YP_006349730.2| - 0.011 15.2 0.0 0.024 14.1 0.0 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region IPT PF01745.16 gi|662859516|ref|YP_006349730.2| - 0.018 14.4 0.8 0.86 9.0 0.0 2.6 3 0 0 3 3 3 0 Isopentenyl transferase Atrophin-1 PF03154.15 gi|662859516|ref|YP_006349730.2| - 0.021 13.2 0.4 0.03 12.7 0.4 1.1 1 0 0 1 1 1 0 Atrophin-1 family PhoH PF02562.16 gi|662859516|ref|YP_006349730.2| - 0.021 14.3 0.1 0.4 10.1 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein Gon7 PF08738.10 gi|662859516|ref|YP_006349730.2| - 0.024 14.7 0.4 0.047 13.8 0.4 1.5 1 0 0 1 1 1 0 Gon7 family COG6 PF06419.11 gi|662859516|ref|YP_006349730.2| - 0.024 12.9 0.9 0.036 12.3 0.9 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 AAA_3 PF07726.11 gi|662859516|ref|YP_006349730.2| - 0.029 14.2 0.0 0.056 13.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|662859516|ref|YP_006349730.2| - 0.033 13.3 0.6 0.11 11.6 0.0 1.9 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|662859516|ref|YP_006349730.2| - 0.036 13.8 0.2 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Taxilin PF09728.9 gi|662859516|ref|YP_006349730.2| - 0.061 12.5 0.6 0.099 11.8 0.6 1.2 1 0 0 1 1 1 0 Myosin-like coiled-coil protein ATPase PF06745.13 gi|662859516|ref|YP_006349730.2| - 0.068 12.5 1.1 0.2 11.0 0.1 2.3 2 1 0 2 2 2 0 KaiC ATPase_2 PF01637.18 gi|662859516|ref|YP_006349730.2| - 0.07 13.0 0.4 0.76 9.7 0.0 2.4 2 1 1 3 3 2 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|662859516|ref|YP_006349730.2| - 0.074 12.6 5.7 0.18 11.3 0.1 3.2 2 1 1 3 3 3 0 AAA domain KAP_NTPase PF07693.14 gi|662859516|ref|YP_006349730.2| - 0.075 12.3 0.1 4.3 6.5 0.1 2.3 1 1 0 1 1 1 0 KAP family P-loop domain DUF2203 PF09969.9 gi|662859516|ref|YP_006349730.2| - 0.084 13.6 1.1 0.21 12.3 0.6 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) RE_Bsp6I PF09504.10 gi|662859516|ref|YP_006349730.2| - 0.093 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Bsp6I restriction endonuclease AAA_13 PF13166.6 gi|662859516|ref|YP_006349730.2| - 0.099 11.3 0.6 12 4.4 0.9 2.2 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|662859516|ref|YP_006349730.2| - 0.12 11.5 0.7 0.71 9.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DMPK_coil PF08826.10 gi|662859516|ref|YP_006349730.2| - 0.14 12.3 2.1 0.57 10.3 2.1 2.1 1 0 0 1 1 1 0 DMPK coiled coil domain like ABC_tran PF00005.27 gi|662859516|ref|YP_006349730.2| - 0.15 12.6 0.2 0.74 10.3 0.0 2.2 2 0 0 2 2 2 0 ABC transporter BLOC1_2 PF10046.9 gi|662859516|ref|YP_006349730.2| - 0.94 9.8 7.5 0.3 11.4 1.3 3.0 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ZapB PF06005.12 gi|662859516|ref|YP_006349730.2| - 3.3 8.2 7.6 0.55 10.7 2.4 2.3 3 0 0 3 3 2 0 Cell division protein ZapB dUTPase PF00692.19 gi|389847490|ref|YP_006349729.1| - 1.3e-12 47.5 0.0 2e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|389847490|ref|YP_006349729.1| - 0.00061 18.7 0.0 0.001 17.9 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.20 gi|389847489|ref|YP_006349728.1| - 2.4e-105 353.2 0.3 1.4e-103 347.4 0.3 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|389847489|ref|YP_006349728.1| - 7.7e-21 74.8 0.0 1.5e-20 73.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Acetyltransf_1 PF00583.25 gi|389847488|ref|YP_006349727.1| - 3.7e-16 59.4 0.0 4.5e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389847488|ref|YP_006349727.1| - 4.4e-12 46.3 0.0 6.2e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389847488|ref|YP_006349727.1| - 2.6e-11 43.6 0.0 3.1e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847488|ref|YP_006349727.1| - 2.9e-09 36.8 0.0 4.3e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|389847488|ref|YP_006349727.1| - 0.00022 21.3 0.0 0.00067 19.7 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|389847488|ref|YP_006349727.1| - 0.00024 20.9 0.0 0.00029 20.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_8 PF13523.6 gi|389847488|ref|YP_006349727.1| - 0.00084 19.0 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389847488|ref|YP_006349727.1| - 0.027 15.1 0.0 0.033 14.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain BAT PF15915.5 gi|389847487|ref|YP_006349726.1| - 2.4e-30 105.5 6.8 2.4e-30 105.5 6.8 3.1 3 1 1 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|389847487|ref|YP_006349726.1| - 6e-19 67.6 0.0 1.6e-18 66.2 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|389847487|ref|YP_006349726.1| - 5.2e-16 58.7 0.0 5.2e-15 55.4 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|389847487|ref|YP_006349726.1| - 3.8e-11 43.2 0.4 3.8e-11 43.2 0.4 3.3 4 0 0 4 4 4 1 PAS fold GAF_2 PF13185.6 gi|389847487|ref|YP_006349726.1| - 4.9e-11 43.1 9.6 6.3e-06 26.5 1.4 3.5 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.7 gi|389847487|ref|YP_006349726.1| - 1.8e-09 37.8 0.0 7.8e-09 35.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|389847487|ref|YP_006349726.1| - 6.8e-07 29.2 0.0 3.2e-06 27.0 0.0 2.2 1 0 0 1 1 1 1 PAS domain GAF PF01590.26 gi|389847487|ref|YP_006349726.1| - 6.2e-06 26.9 1.4 0.0015 19.2 0.0 3.5 4 0 0 4 4 3 1 GAF domain PAS_7 PF12860.7 gi|389847487|ref|YP_006349726.1| - 8.5e-06 25.9 0.1 6.3e-05 23.1 0.0 2.6 2 1 1 3 3 3 1 PAS fold Response_reg PF00072.24 gi|389847487|ref|YP_006349726.1| - 1.8e-05 24.8 0.0 4.5e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|389847487|ref|YP_006349726.1| - 4.2e-05 23.8 0.7 0.00036 20.8 0.0 2.7 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain TetR_C_7 PF14246.6 gi|389847487|ref|YP_006349726.1| - 0.064 13.3 0.8 0.41 10.7 0.2 2.5 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain HalOD1 PF18545.1 gi|389847486|ref|YP_006349725.1| - 2.7e-19 69.2 1.4 1.7e-18 66.7 1.4 1.9 1 1 0 1 1 1 1 Halobacterial output domain 1 zf-C2H2_9 PF16293.5 gi|389847485|ref|YP_006349724.1| - 0.0073 16.1 0.3 0.013 15.3 0.3 1.3 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) NOA36 PF06524.12 gi|389847484|ref|YP_006349723.1| - 0.086 12.1 15.9 0.11 11.8 15.9 1.1 1 0 0 1 1 1 0 NOA36 protein CDC45 PF02724.14 gi|389847484|ref|YP_006349723.1| - 2.7 6.2 8.9 3.6 5.8 8.9 1.1 1 0 0 1 1 1 0 CDC45-like protein NUDIX PF00293.28 gi|389847483|ref|YP_006349722.1| - 2.5e-16 59.9 0.6 4.3e-16 59.2 0.6 1.3 1 0 0 1 1 1 1 NUDIX domain Rhodanese PF00581.20 gi|389847482|ref|YP_006349721.1| - 2.6e-11 44.0 0.0 3.4e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain HIRAN PF08797.11 gi|389847482|ref|YP_006349721.1| - 0.053 13.4 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 HIRAN domain SUI1 PF01253.22 gi|389847481|ref|YP_006349720.1| - 1.4e-22 80.0 0.0 1.7e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|389847481|ref|YP_006349720.1| - 0.017 14.9 0.5 0.02 14.6 0.5 1.1 1 0 0 1 1 1 0 DTW domain Img2 PF05046.14 gi|389847481|ref|YP_006349720.1| - 0.017 15.4 0.0 0.029 14.7 0.0 1.6 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) CdvA PF18822.1 gi|662859515|ref|YP_006349719.2| - 0.034 14.0 0.1 0.052 13.4 0.1 1.3 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DUF4897 PF16238.5 gi|662859514|ref|YP_006349718.2| - 0.0065 16.3 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) HTH_27 PF13463.6 gi|662859514|ref|YP_006349718.2| - 0.011 16.2 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain AAA_3 PF07726.11 gi|662859514|ref|YP_006349718.2| - 0.047 13.5 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) HTH_Crp_2 PF13545.6 gi|662859514|ref|YP_006349718.2| - 0.15 12.1 0.1 0.3 11.1 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Transglut_core PF01841.19 gi|389847478|ref|YP_006349717.1| - 8.1e-30 103.6 0.1 2.5e-29 102.0 0.1 1.9 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|389847478|ref|YP_006349717.1| - 3.5e-07 30.4 9.6 3.5e-07 30.4 9.6 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.6 gi|389847478|ref|YP_006349717.1| - 0.00026 20.9 0.5 0.00094 19.1 0.0 2.2 2 1 0 2 2 2 1 Transglutaminase-like superfamily DUF4218 PF13960.6 gi|389847478|ref|YP_006349717.1| - 0.023 14.3 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4218) DUF58 PF01882.18 gi|662859513|ref|YP_006349716.2| - 1e-16 60.9 0.7 1.8e-16 60.2 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|389847475|ref|YP_006349714.1| - 3.6e-58 195.1 0.1 5.8e-58 194.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|389847475|ref|YP_006349714.1| - 3e-19 68.6 4.1 7.1e-19 67.4 4.1 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|389847475|ref|YP_006349714.1| - 2.2e-13 50.4 0.0 3.8e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|389847475|ref|YP_006349714.1| - 1e-07 32.4 0.0 2.2e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|389847475|ref|YP_006349714.1| - 0.00011 22.0 0.0 0.0011 18.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|389847475|ref|YP_006349714.1| - 0.0013 18.2 0.0 0.01 15.2 0.0 2.2 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|389847475|ref|YP_006349714.1| - 0.0015 18.3 0.0 0.013 15.3 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|389847475|ref|YP_006349714.1| - 0.0053 15.9 0.0 0.011 14.9 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|389847475|ref|YP_006349714.1| - 0.026 14.9 0.4 0.055 13.9 0.4 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_16 PF13191.6 gi|389847475|ref|YP_006349714.1| - 0.045 14.1 0.2 0.19 12.1 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_2 PF07724.14 gi|389847475|ref|YP_006349714.1| - 0.15 12.2 0.0 0.53 10.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) MutS_V PF00488.21 gi|662859512|ref|YP_006349713.2| - 5.3e-81 271.2 0.1 1.1e-80 270.1 0.1 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|662859512|ref|YP_006349713.2| - 6.2e-38 130.9 4.4 1.2e-37 130.0 4.4 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|662859512|ref|YP_006349713.2| - 1.2e-34 118.9 0.0 2.4e-34 117.9 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|662859512|ref|YP_006349713.2| - 8.4e-31 106.2 0.0 2.2e-30 104.8 0.0 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|662859512|ref|YP_006349713.2| - 1.1e-11 45.2 0.0 3.5e-11 43.6 0.0 2.0 1 1 0 1 1 1 1 MutS domain II AAA_29 PF13555.6 gi|662859512|ref|YP_006349713.2| - 0.0075 16.0 0.0 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|662859512|ref|YP_006349713.2| - 0.12 12.8 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|662859512|ref|YP_006349713.2| - 0.15 11.6 3.1 1.3 8.5 0.0 3.4 2 1 1 3 3 3 0 AAA domain MutL_C PF08676.11 gi|389847473|ref|YP_006349712.1| - 5.1e-32 110.7 0.0 8.1e-32 110.0 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|389847473|ref|YP_006349712.1| - 2e-27 95.2 0.0 2.9e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|389847473|ref|YP_006349712.1| - 8.3e-13 48.3 0.1 1.7e-12 47.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|389847473|ref|YP_006349712.1| - 1.1e-06 29.1 0.1 2.5e-06 28.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Nudix_N_2 PF14803.6 gi|389847472|ref|YP_006349711.1| - 0.0037 17.1 2.2 0.0082 16.0 2.2 1.6 1 0 0 1 1 1 1 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|389847472|ref|YP_006349711.1| - 0.0068 16.4 1.2 0.016 15.2 1.2 1.6 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|389847472|ref|YP_006349711.1| - 0.0098 16.0 1.7 0.056 13.6 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain zf-ACC PF17848.1 gi|389847472|ref|YP_006349711.1| - 0.033 14.2 0.8 0.049 13.7 0.8 1.3 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|389847472|ref|YP_006349711.1| - 0.053 13.5 0.4 0.075 13.0 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nop14 PF04147.12 gi|389847472|ref|YP_006349711.1| - 6.3 4.9 7.1 6.7 4.8 7.1 1.0 1 0 0 1 1 1 0 Nop14-like family ABC2_membrane_3 PF12698.7 gi|389847471|ref|YP_006349710.1| - 0.2 10.7 5.1 0.25 10.4 5.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Bac_luciferase PF00296.20 gi|389847470|ref|YP_006349709.1| - 1.1e-60 205.7 2.7 1.4e-60 205.3 2.7 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase F420_ligase PF01996.16 gi|662859511|ref|YP_006349708.2| - 2.4e-58 197.4 0.0 3e-58 197.0 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Metallophos_2 PF12850.7 gi|389847467|ref|YP_006349706.1| - 5.1e-26 91.8 0.3 5.8e-26 91.6 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|389847467|ref|YP_006349706.1| - 0.00061 20.3 0.4 0.0014 19.2 0.1 1.7 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase IF-2B PF01008.17 gi|389847466|ref|YP_006349705.1| - 2.9e-44 151.4 0.1 4.7e-44 150.7 0.1 1.3 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|389847466|ref|YP_006349705.1| - 1.3e-11 44.7 1.5 1.3e-11 44.7 1.5 2.4 2 1 1 3 3 3 1 NUDIX domain NUDIX_4 PF14815.6 gi|389847466|ref|YP_006349705.1| - 0.00034 20.6 0.0 0.00077 19.4 0.0 1.5 1 0 0 1 1 1 1 NUDIX domain DUF3179 PF11376.8 gi|389847465|ref|YP_006349704.1| - 5e-48 163.9 0.0 1.8e-29 103.0 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3179) 2-Hacid_dh_C PF02826.19 gi|389847464|ref|YP_006349703.1| - 1.5e-52 177.5 0.0 1.9e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|389847464|ref|YP_006349703.1| - 4.9e-05 23.0 0.1 6.3e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|389847464|ref|YP_006349703.1| - 0.00087 19.4 0.0 0.002 18.2 0.0 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|389847464|ref|YP_006349703.1| - 0.0022 18.5 0.0 0.0047 17.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|389847464|ref|YP_006349703.1| - 0.0075 16.5 0.1 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|389847464|ref|YP_006349703.1| - 0.019 15.4 0.1 0.044 14.2 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|389847464|ref|YP_006349703.1| - 0.025 14.5 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|389847464|ref|YP_006349703.1| - 0.15 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain MMR_HSR1 PF01926.23 gi|389847463|ref|YP_006349702.1| - 6.1e-20 71.4 0.0 9e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|389847463|ref|YP_006349702.1| - 4.4e-13 49.1 0.4 7.3e-12 45.1 0.4 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|389847463|ref|YP_006349702.1| - 8.7e-06 25.7 0.0 0.002 18.1 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AIG1 PF04548.16 gi|389847463|ref|YP_006349702.1| - 1.9e-05 24.1 0.1 3.9e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 gi|389847463|ref|YP_006349702.1| - 1.9e-05 24.3 0.1 0.0044 16.6 0.1 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|389847463|ref|YP_006349702.1| - 0.0017 18.4 0.2 0.021 14.9 0.1 2.0 1 1 1 2 2 2 1 Dynamin family ABC_tran PF00005.27 gi|389847463|ref|YP_006349702.1| - 0.0057 17.2 0.1 0.008 16.7 0.1 1.5 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|389847463|ref|YP_006349702.1| - 0.009 16.6 0.0 0.015 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Roc PF08477.13 gi|389847463|ref|YP_006349702.1| - 0.014 15.6 0.4 0.034 14.3 0.0 1.8 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|389847463|ref|YP_006349702.1| - 0.03 14.6 0.2 0.11 12.8 0.1 2.1 1 1 1 2 2 2 0 AAA domain SRPRB PF09439.10 gi|389847463|ref|YP_006349702.1| - 0.036 13.5 0.3 0.076 12.4 0.3 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|389847463|ref|YP_006349702.1| - 0.052 13.1 0.2 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 Ras family RNA_helicase PF00910.22 gi|389847463|ref|YP_006349702.1| - 0.06 13.7 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Septin PF00735.18 gi|389847463|ref|YP_006349702.1| - 0.066 12.5 0.3 0.38 10.0 0.3 2.0 1 1 0 1 1 1 0 Septin TIP49 PF06068.13 gi|389847463|ref|YP_006349702.1| - 0.07 12.3 0.2 0.13 11.5 0.2 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain ATP_bind_1 PF03029.17 gi|389847463|ref|YP_006349702.1| - 0.089 12.6 2.2 0.84 9.4 0.1 2.4 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|389847463|ref|YP_006349702.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Acetyltransf_1 PF00583.25 gi|389847462|ref|YP_006349701.1| - 1.8e-10 41.0 0.0 2.1e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389847462|ref|YP_006349701.1| - 3.7e-07 30.5 0.0 5.4e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389847462|ref|YP_006349701.1| - 6.6e-06 26.1 0.0 8.6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847462|ref|YP_006349701.1| - 0.00033 20.5 0.0 0.00052 19.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|389847462|ref|YP_006349701.1| - 0.054 13.6 0.6 0.068 13.3 0.6 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389847462|ref|YP_006349701.1| - 0.14 12.3 0.1 1.5 8.9 0.1 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain 5-FTHF_cyc-lig PF01812.20 gi|389847461|ref|YP_006349700.1| - 1e-29 103.7 0.0 1.3e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF389 PF04087.14 gi|389847460|ref|YP_006349699.1| - 1.6e-35 122.2 15.1 1.6e-35 122.2 15.1 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) SIMPL PF04402.14 gi|389847459|ref|YP_006349698.1| - 7.3e-42 144.1 8.3 8.3e-42 143.9 8.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) NOG1_N PF17835.1 gi|389847458|ref|YP_006349697.1| - 5.6e-43 146.7 0.4 8.1e-43 146.2 0.4 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|389847458|ref|YP_006349697.1| - 6.8e-23 80.2 0.1 1.8e-22 78.8 0.1 1.8 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|389847458|ref|YP_006349697.1| - 4e-21 75.2 0.0 8e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|389847458|ref|YP_006349697.1| - 1.4e-11 44.1 0.0 2.4e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|389847458|ref|YP_006349697.1| - 7.3e-05 22.9 0.7 0.082 13.0 0.0 3.0 2 2 1 3 3 3 2 Dynamin family AIG1 PF04548.16 gi|389847458|ref|YP_006349697.1| - 0.00047 19.6 0.0 0.00073 18.9 0.0 1.3 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|389847458|ref|YP_006349697.1| - 0.00091 19.2 0.0 0.034 14.1 0.0 2.5 2 1 0 2 2 2 1 RsgA GTPase SRPRB PF09439.10 gi|389847458|ref|YP_006349697.1| - 0.0017 17.8 0.0 0.0043 16.5 0.0 1.7 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_16 PF13191.6 gi|389847458|ref|YP_006349697.1| - 0.0032 17.9 0.1 0.012 16.0 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain Arf PF00025.21 gi|389847458|ref|YP_006349697.1| - 0.019 14.4 0.0 0.071 12.6 0.0 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_18 PF13238.6 gi|389847458|ref|YP_006349697.1| - 0.037 14.6 0.0 0.23 12.0 0.0 2.3 2 1 1 3 3 3 0 AAA domain OmpH PF03938.14 gi|389847458|ref|YP_006349697.1| - 0.042 14.2 2.0 2.6 8.4 0.3 2.6 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Ras PF00071.22 gi|389847458|ref|YP_006349697.1| - 0.063 12.9 0.0 0.57 9.8 0.0 2.5 2 1 0 2 2 2 0 Ras family Roc PF08477.13 gi|389847458|ref|YP_006349697.1| - 0.12 12.7 0.0 3.3 7.9 0.0 2.8 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Hrs_helical PF12210.8 gi|389847458|ref|YP_006349697.1| - 0.14 12.7 1.4 8.3 7.0 0.2 2.6 1 1 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF5518 PF17647.1 gi|389847457|ref|YP_006349696.1| - 2.6e-16 59.8 44.2 2.9e-16 59.7 44.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF4212 PF13937.6 gi|389847457|ref|YP_006349696.1| - 4.5 7.7 5.9 1.1 9.6 0.6 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4212) Ribo_biogen_C PF04034.13 gi|389847456|ref|YP_006349695.1| - 2e-46 156.8 0.0 2.5e-46 156.5 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|389847456|ref|YP_006349695.1| - 1.6e-09 37.5 0.0 2.6e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.15 gi|389847456|ref|YP_006349695.1| - 0.095 12.4 0.0 0.3 10.8 0.0 1.7 1 1 0 1 1 1 0 DTW domain SnoaL_2 PF12680.7 gi|389847455|ref|YP_006349694.1| - 2.3e-12 47.5 0.6 2.7e-12 47.2 0.6 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|389847455|ref|YP_006349694.1| - 0.0096 16.3 0.1 0.012 16.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Seryl_tRNA_N PF02403.22 gi|389847454|ref|YP_006349693.1| - 1.8e-30 105.3 4.7 3e-30 104.6 4.7 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|389847454|ref|YP_006349693.1| - 2.1e-27 96.2 0.0 3.8e-27 95.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ZapB PF06005.12 gi|389847454|ref|YP_006349693.1| - 0.038 14.4 11.2 0.86 10.1 3.6 2.7 2 1 1 3 3 3 0 Cell division protein ZapB FapA PF03961.13 gi|389847454|ref|YP_006349693.1| - 0.079 11.6 1.5 0.11 11.1 1.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A APG6_N PF17675.1 gi|389847454|ref|YP_006349693.1| - 0.17 12.4 8.2 0.32 11.5 8.2 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region PhoU PF01895.19 gi|389847454|ref|YP_006349693.1| - 0.19 12.2 2.0 0.61 10.6 1.0 2.2 2 0 0 2 2 2 0 PhoU domain bZIP_1 PF00170.21 gi|389847454|ref|YP_006349693.1| - 0.21 11.7 1.5 15 5.8 0.3 2.4 2 0 0 2 2 2 0 bZIP transcription factor Golgin_A5 PF09787.9 gi|389847454|ref|YP_006349693.1| - 0.21 11.0 3.9 0.32 10.4 3.9 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 TPR_MLP1_2 PF07926.12 gi|389847454|ref|YP_006349693.1| - 0.29 11.2 6.7 0.57 10.2 6.7 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein GreA_GreB_N PF03449.15 gi|389847454|ref|YP_006349693.1| - 0.45 10.7 11.3 1.9 8.7 11.3 2.1 1 1 0 1 1 1 0 Transcription elongation factor, N-terminal Cnn_1N PF07989.11 gi|389847454|ref|YP_006349693.1| - 1.3 9.3 5.5 7.2 6.9 3.6 2.2 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 HalX PF08663.10 gi|389847454|ref|YP_006349693.1| - 3 8.2 15.4 1.2 9.5 9.2 3.0 2 1 0 2 2 2 0 HalX domain Spc24 PF08286.11 gi|389847454|ref|YP_006349693.1| - 9.5 6.5 6.6 3e+02 1.7 6.6 2.3 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 ABC2_membrane_2 PF12679.7 gi|389847453|ref|YP_006349692.1| - 1.6e-39 135.9 23.9 1.1e-19 70.8 9.1 2.9 2 2 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389847453|ref|YP_006349692.1| - 1.4e-05 25.1 15.4 0.00086 19.3 3.5 2.5 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389847453|ref|YP_006349692.1| - 0.014 14.5 22.4 0.079 12.1 11.9 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF4632 PF15451.6 gi|389847453|ref|YP_006349692.1| - 0.18 11.9 1.5 0.36 10.9 1.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4632) OppC_N PF12911.7 gi|389847453|ref|YP_006349692.1| - 0.19 11.8 4.7 0.86 9.6 0.1 3.8 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|389847452|ref|YP_006349691.1| - 4.2e-28 98.6 0.0 8.5e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847452|ref|YP_006349691.1| - 1.4e-10 41.5 0.2 3.8e-06 26.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389847452|ref|YP_006349691.1| - 5.4e-06 27.0 0.0 3.7e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) MeaB PF03308.16 gi|389847452|ref|YP_006349691.1| - 0.011 14.7 0.0 0.019 13.9 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_10 PF12846.7 gi|389847452|ref|YP_006349691.1| - 0.016 14.1 0.0 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.6 gi|389847452|ref|YP_006349691.1| - 0.027 15.0 0.1 0.042 14.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain LAL_C2 PF18603.1 gi|389847452|ref|YP_006349691.1| - 0.035 14.3 0.1 2.4 8.4 0.0 3.4 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 AAA_29 PF13555.6 gi|389847452|ref|YP_006349691.1| - 0.049 13.4 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|389847452|ref|YP_006349691.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|389847452|ref|YP_006349691.1| - 0.097 12.1 0.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|389847452|ref|YP_006349691.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain Lactamase_B PF00753.27 gi|389847451|ref|YP_006349690.1| - 7e-24 84.9 11.6 1.1e-23 84.3 11.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389847451|ref|YP_006349690.1| - 0.0002 21.0 1.0 0.00042 19.9 1.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Pox_VP8_L4R PF04498.12 gi|389847451|ref|YP_006349690.1| - 0.27 10.8 0.1 1.8 8.1 0.0 1.9 2 0 0 2 2 2 0 Poxvirus nucleic acid binding protein VP8/L4R AMP-binding PF00501.28 gi|389847450|ref|YP_006349689.1| - 7e-93 311.5 0.0 8.3e-93 311.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Na_H_Exchanger PF00999.21 gi|389847449|ref|YP_006349688.1| - 3.3e-34 118.3 41.9 4.5e-34 117.9 41.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|389847449|ref|YP_006349688.1| - 1.6e-30 105.7 1.5 2.2e-30 105.3 0.5 1.8 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.21 gi|389847449|ref|YP_006349688.1| - 2.9e-14 52.6 1.1 1.2e-13 50.7 0.2 2.4 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|389847449|ref|YP_006349688.1| - 1.1e-07 32.2 0.1 3.5e-07 30.6 0.1 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|389847449|ref|YP_006349688.1| - 5.9e-06 26.8 3.5 0.00069 20.1 0.4 3.4 2 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|389847449|ref|YP_006349688.1| - 1.2e-05 25.2 2.9 3.5e-05 23.8 2.8 1.7 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|389847449|ref|YP_006349688.1| - 0.00012 21.6 0.7 0.0002 20.9 0.7 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|389847449|ref|YP_006349688.1| - 0.0004 20.6 0.7 0.0021 18.3 0.7 2.4 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|389847449|ref|YP_006349688.1| - 0.00061 19.1 0.5 0.0011 18.3 0.4 1.4 1 1 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|389847449|ref|YP_006349688.1| - 0.00062 19.4 0.2 0.0019 17.9 0.2 1.9 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|389847449|ref|YP_006349688.1| - 0.00099 18.8 0.1 0.0015 18.2 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DFP PF04127.15 gi|389847449|ref|YP_006349688.1| - 0.0017 18.2 0.2 0.0031 17.4 0.2 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein IlvN PF07991.12 gi|389847449|ref|YP_006349688.1| - 0.0039 16.8 0.1 0.0076 15.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_N PF03721.14 gi|389847449|ref|YP_006349688.1| - 0.0087 15.6 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|389847449|ref|YP_006349688.1| - 0.011 15.6 1.0 0.034 14.0 0.2 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|389847449|ref|YP_006349688.1| - 0.011 15.7 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|389847449|ref|YP_006349688.1| - 0.011 16.2 0.0 0.029 14.9 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain Pyr_redox_2 PF07992.14 gi|389847449|ref|YP_006349688.1| - 0.014 14.7 0.1 0.034 13.4 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389847449|ref|YP_006349688.1| - 0.015 15.9 2.3 0.032 14.8 0.3 2.7 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.9 gi|389847449|ref|YP_006349688.1| - 0.022 14.6 1.4 0.86 9.5 0.1 3.0 2 0 0 2 2 2 0 Rossmann-like domain NAD_binding_2 PF03446.15 gi|389847449|ref|YP_006349688.1| - 0.027 14.6 0.1 0.063 13.4 0.1 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|389847449|ref|YP_006349688.1| - 0.046 13.8 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|389847449|ref|YP_006349688.1| - 0.053 13.7 0.1 0.15 12.3 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|389847449|ref|YP_006349688.1| - 0.062 12.3 0.1 0.089 11.8 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.21 gi|389847449|ref|YP_006349688.1| - 0.064 13.3 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|389847449|ref|YP_006349688.1| - 0.079 12.3 1.2 0.093 12.1 0.1 1.6 2 0 0 2 2 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CbiJ PF02571.14 gi|389847449|ref|YP_006349688.1| - 0.12 11.9 0.3 0.21 11.0 0.3 1.4 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK NmrA PF05368.13 gi|389847449|ref|YP_006349688.1| - 1.6 8.2 6.3 0.49 9.9 1.1 2.5 2 1 1 3 3 3 0 NmrA-like family DUF1418 PF07214.12 gi|389847449|ref|YP_006349688.1| - 8.8 6.3 8.2 5.5 6.9 0.1 3.2 3 1 0 3 3 2 0 Protein of unknown function (DUF1418) AFOR_C PF01314.18 gi|389847448|ref|YP_006349687.1| - 2.2e-82 277.1 0.1 3.8e-82 276.3 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|389847448|ref|YP_006349687.1| - 9.6e-60 201.8 0.0 1.4e-59 201.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Thiolase_N PF00108.23 gi|389847446|ref|YP_006349685.1| - 2.1e-75 253.5 0.4 2.9e-75 253.0 0.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389847446|ref|YP_006349685.1| - 1.8e-42 143.9 0.0 3.4e-42 143.0 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389847446|ref|YP_006349685.1| - 0.00041 20.0 0.1 0.00092 18.9 0.1 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|389847446|ref|YP_006349685.1| - 0.0013 18.5 1.9 0.48 10.3 0.1 3.1 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|389847446|ref|YP_006349685.1| - 0.019 15.1 0.0 0.053 13.7 0.0 1.8 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIR_SIR PF01077.22 gi|389847445|ref|YP_006349684.1| - 9.2e-48 161.7 0.0 1e-33 116.1 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|389847445|ref|YP_006349684.1| - 4.3e-36 122.6 0.0 5.3e-17 61.4 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain NTP_transf_3 PF12804.7 gi|389847444|ref|YP_006349683.1| - 1.4e-31 110.0 0.2 1.7e-31 109.7 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|389847444|ref|YP_006349683.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.5 2 0 0 2 2 2 0 Cytidylyltransferase MFS_1 PF07690.16 gi|389847443|ref|YP_006349682.1| - 3.4e-33 115.0 76.4 3.8e-32 111.6 52.8 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389847443|ref|YP_006349682.1| - 0.00043 19.3 3.5 0.00043 19.3 3.5 3.4 3 1 1 4 4 4 3 MFS_1 like family Molybdopterin PF00384.22 gi|662859510|ref|YP_006349681.2| - 2.3e-55 188.3 0.0 2.9e-55 188.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|662859510|ref|YP_006349681.2| - 5.1e-13 49.0 0.4 1.3e-12 47.8 0.1 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|662859510|ref|YP_006349681.2| - 1.1e-07 31.7 2.0 2.5e-07 30.6 2.0 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain AAA PF00004.29 gi|389847441|ref|YP_006349680.1| - 7.1e-40 136.5 0.0 1.5e-39 135.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|389847441|ref|YP_006349680.1| - 1.3e-07 31.3 0.1 3.4e-07 30.0 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|389847441|ref|YP_006349680.1| - 1.7e-06 28.0 0.0 9.2e-06 25.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|389847441|ref|YP_006349680.1| - 3.1e-06 27.8 0.3 4.5e-05 24.0 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|389847441|ref|YP_006349680.1| - 3.5e-06 27.2 0.0 1.1e-05 25.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|389847441|ref|YP_006349680.1| - 2.6e-05 24.0 0.1 0.0001 22.1 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|389847441|ref|YP_006349680.1| - 2.8e-05 24.4 0.2 0.00013 22.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|389847441|ref|YP_006349680.1| - 7e-05 23.1 2.3 0.0067 16.7 0.9 2.9 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|389847441|ref|YP_006349680.1| - 0.00023 21.3 0.0 0.00058 20.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|389847441|ref|YP_006349680.1| - 0.00027 21.4 2.1 0.0099 16.3 2.1 3.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|389847441|ref|YP_006349680.1| - 0.00064 19.4 0.0 0.0086 15.7 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|389847441|ref|YP_006349680.1| - 0.00082 18.9 0.1 0.0032 17.0 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_17 PF13207.6 gi|389847441|ref|YP_006349680.1| - 0.0013 19.2 0.1 0.004 17.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain T2SSE PF00437.20 gi|389847441|ref|YP_006349680.1| - 0.0014 17.8 0.0 0.0024 17.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein SKI PF01202.22 gi|389847441|ref|YP_006349680.1| - 0.0019 18.3 0.1 0.0059 16.8 0.0 1.8 2 0 0 2 2 1 1 Shikimate kinase TIP49 PF06068.13 gi|389847441|ref|YP_006349680.1| - 0.0023 17.2 0.0 0.0052 16.0 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain Cytidylate_kin2 PF13189.6 gi|389847441|ref|YP_006349680.1| - 0.004 17.3 0.0 0.01 16.0 0.0 1.7 1 0 0 1 1 1 1 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|389847441|ref|YP_006349680.1| - 0.0077 16.3 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TniB PF05621.11 gi|389847441|ref|YP_006349680.1| - 0.011 15.2 0.1 1.2 8.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 gi|389847441|ref|YP_006349680.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|389847441|ref|YP_006349680.1| - 0.011 15.5 0.0 0.027 14.2 0.0 1.7 1 0 0 1 1 1 0 Cytidylate kinase TsaE PF02367.17 gi|389847441|ref|YP_006349680.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 gi|389847441|ref|YP_006349680.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|389847441|ref|YP_006349680.1| - 0.013 15.3 0.0 0.042 13.6 0.0 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|389847441|ref|YP_006349680.1| - 0.014 15.8 0.0 0.034 14.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|389847441|ref|YP_006349680.1| - 0.021 14.6 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|389847441|ref|YP_006349680.1| - 0.025 14.4 0.0 0.067 13.1 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|389847441|ref|YP_006349680.1| - 0.027 14.5 0.0 0.079 13.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|389847441|ref|YP_006349680.1| - 0.045 13.1 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|389847441|ref|YP_006349680.1| - 0.046 14.2 0.0 0.12 12.9 0.0 1.8 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|389847441|ref|YP_006349680.1| - 0.087 12.7 0.0 6.9 6.6 0.0 2.5 1 1 1 2 2 2 0 NACHT domain SRP54 PF00448.22 gi|389847441|ref|YP_006349680.1| - 0.13 11.9 0.9 0.43 10.2 0.0 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain ATPase PF06745.13 gi|389847441|ref|YP_006349680.1| - 0.31 10.4 1.2 1.5 8.1 0.2 2.3 2 1 0 2 2 2 0 KaiC AAA_19 PF13245.6 gi|389847441|ref|YP_006349680.1| - 0.46 10.8 2.9 0.71 10.2 0.5 2.5 2 1 0 2 2 1 0 AAA domain Lactamase_B_2 PF12706.7 gi|389847439|ref|YP_006349678.1| - 4.8e-16 58.9 0.7 6.7e-16 58.4 0.7 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SBP_bac_5 PF00496.22 gi|389847436|ref|YP_006349675.1| - 2.3e-88 296.7 0.0 2.9e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle eIF2_C PF09173.11 gi|389847433|ref|YP_006349672.1| - 8.4e-31 106.1 0.1 1.8e-30 105.0 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|389847433|ref|YP_006349672.1| - 2.3e-27 95.8 3.4 1.5e-26 93.1 3.4 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|389847433|ref|YP_006349672.1| - 6e-10 39.4 1.1 1.6e-09 38.0 1.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|389847433|ref|YP_006349672.1| - 0.00013 22.0 0.0 0.00035 20.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|389847433|ref|YP_006349672.1| - 0.0002 21.3 0.8 0.013 15.4 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|389847433|ref|YP_006349672.1| - 0.0051 16.6 0.5 0.25 11.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|389847433|ref|YP_006349672.1| - 0.012 15.6 0.1 0.023 14.7 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|389847433|ref|YP_006349672.1| - 0.019 14.4 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|389847433|ref|YP_006349672.1| - 0.04 13.5 1.8 3.1 7.3 0.0 2.5 1 1 1 2 2 2 0 Ferrous iron transport protein B AAA_23 PF13476.6 gi|389847433|ref|YP_006349672.1| - 0.2 12.2 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIN_9 PF18477.1 gi|662859507|ref|YP_006349671.2| - 3e-41 140.3 0.3 3.5e-41 140.2 0.3 1.0 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|662859507|ref|YP_006349671.2| - 5.7e-06 26.6 0.0 8.3e-05 22.9 0.0 2.0 1 1 1 2 2 2 1 PIN domain DUF188 PF02639.14 gi|662859507|ref|YP_006349671.2| - 3.3e-05 23.5 0.4 5.8e-05 22.8 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 Fcf1 PF04900.12 gi|662859507|ref|YP_006349671.2| - 0.0067 16.8 0.0 0.0091 16.4 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_3 PF13470.6 gi|662859507|ref|YP_006349671.2| - 0.048 14.4 4.4 0.71 10.7 4.4 2.1 1 1 0 1 1 1 0 PIN domain PIN_12 PF16289.5 gi|662859507|ref|YP_006349671.2| - 0.092 13.2 0.1 0.17 12.4 0.0 1.4 2 0 0 2 2 2 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|389847431|ref|YP_006349670.1| - 5.3e-15 55.5 0.1 9e-15 54.8 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|389847431|ref|YP_006349670.1| - 3.6e-14 52.9 0.3 9e-14 51.6 0.3 1.7 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.6 gi|389847431|ref|YP_006349670.1| - 0.065 13.3 0.0 1.9 8.6 0.0 2.4 1 1 0 1 1 1 0 S1 domain RNA_pol_Rbc25 PF08292.12 gi|389847431|ref|YP_006349670.1| - 0.17 12.2 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|389847430|ref|YP_006349669.1| - 4e-15 55.7 0.1 4.8e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|389847430|ref|YP_006349669.1| - 0.00081 19.4 1.7 0.001 19.0 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|389847430|ref|YP_006349669.1| - 0.011 15.9 0.2 0.011 15.8 0.2 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|389847430|ref|YP_006349669.1| - 0.038 13.4 1.3 0.058 12.8 0.2 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|389847430|ref|YP_006349669.1| - 0.046 14.4 1.9 7.1 7.4 0.5 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|389847430|ref|YP_006349669.1| - 0.047 13.7 0.5 0.053 13.5 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|389847430|ref|YP_006349669.1| - 0.058 13.3 3.0 0.74 9.8 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal Cytochrom_c3_2 PF14537.6 gi|389847430|ref|YP_006349669.1| - 0.06 13.8 2.7 0.086 13.3 2.7 1.3 1 0 0 1 1 1 0 Cytochrome c3 zf-RanBP PF00641.18 gi|389847430|ref|YP_006349669.1| - 0.088 12.1 4.3 0.12 11.7 4.3 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-RRN7 PF11781.8 gi|389847430|ref|YP_006349669.1| - 0.17 11.6 4.0 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|389847430|ref|YP_006349669.1| - 0.2 11.5 5.4 0.28 11.0 5.4 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DUF359 PF04019.12 gi|389847429|ref|YP_006349668.1| - 5.1e-41 139.3 0.1 6.3e-41 138.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) WYL PF13280.6 gi|389847429|ref|YP_006349668.1| - 0.17 12.0 0.0 2.7 8.0 0.0 2.2 1 1 1 2 2 2 0 WYL domain ABM PF03992.16 gi|389847429|ref|YP_006349668.1| - 0.18 11.9 0.1 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase Ribosomal_S24e PF01282.19 gi|389847428|ref|YP_006349667.1| - 2.2e-26 91.6 0.2 2.8e-26 91.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Peptidase_M22 PF00814.25 gi|389847427|ref|YP_006349666.1| - 3.1e-73 246.8 0.0 4.5e-73 246.3 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|389847427|ref|YP_006349666.1| - 1e-05 25.0 0.0 1.9e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|389847427|ref|YP_006349666.1| - 0.00096 19.1 6.6 0.0077 16.2 6.6 2.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family V_ATPase_prox PF18274.1 gi|389847427|ref|YP_006349666.1| - 0.012 15.6 0.1 0.062 13.3 0.0 2.2 2 0 0 2 2 2 0 Vacuolar ATPase Subunit I N-terminal proximal lobe Ham1p_like PF01725.16 gi|662859505|ref|YP_006349664.2| - 1.2e-48 165.6 0.0 1.5e-48 165.2 0.0 1.1 1 0 0 1 1 1 1 Ham1 family PIN_3 PF13470.6 gi|389847424|ref|YP_006349663.1| - 0.00011 22.9 0.9 0.00088 20.0 0.9 2.0 1 1 0 1 1 1 1 PIN domain PBP_like_2 PF12849.7 gi|389847423|ref|YP_006349662.1| - 1.6e-31 110.0 2.2 2.7e-31 109.3 2.2 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|389847423|ref|YP_006349662.1| - 1.6e-10 41.2 0.0 2.5e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|389847423|ref|YP_006349662.1| - 0.0019 17.4 0.0 0.0043 16.2 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|389847423|ref|YP_006349662.1| - 0.02 14.8 0.3 0.11 12.4 0.1 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence LysR_substrate PF03466.20 gi|389847423|ref|YP_006349662.1| - 0.19 11.0 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain BPD_transp_1 PF00528.22 gi|389847422|ref|YP_006349661.1| - 7.1e-11 42.2 12.6 7.1e-11 42.2 12.6 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|389847421|ref|YP_006349660.1| - 4.3e-32 111.5 0.0 6.7e-32 110.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847421|ref|YP_006349660.1| - 1.7e-10 41.2 0.0 3.2e-05 23.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|389847421|ref|YP_006349660.1| - 0.00016 21.5 0.7 0.057 13.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|389847421|ref|YP_006349660.1| - 0.00019 21.7 0.1 0.00047 20.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389847421|ref|YP_006349660.1| - 0.00039 20.8 2.5 0.003 18.0 2.5 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|389847421|ref|YP_006349660.1| - 0.0011 19.1 0.2 0.0034 17.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|389847421|ref|YP_006349660.1| - 0.0085 16.5 0.0 0.082 13.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|389847421|ref|YP_006349660.1| - 0.0094 16.2 0.1 0.075 13.3 0.0 2.3 2 1 1 3 3 3 1 AAA domain SbcCD_C PF13558.6 gi|389847421|ref|YP_006349660.1| - 0.011 15.9 0.1 0.21 11.9 0.1 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|389847421|ref|YP_006349660.1| - 0.02 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|389847421|ref|YP_006349660.1| - 0.021 14.3 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|389847421|ref|YP_006349660.1| - 0.025 14.2 2.5 0.15 11.6 2.5 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389847421|ref|YP_006349660.1| - 0.027 13.6 0.3 0.12 11.6 0.3 2.0 1 1 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|389847421|ref|YP_006349660.1| - 0.033 14.7 0.0 0.22 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|389847421|ref|YP_006349660.1| - 0.038 13.7 0.0 0.092 12.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|389847421|ref|YP_006349660.1| - 0.041 13.2 0.0 0.089 12.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.6 gi|389847421|ref|YP_006349660.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|389847421|ref|YP_006349660.1| - 0.19 12.2 0.0 0.29 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|389847421|ref|YP_006349660.1| - 0.21 11.4 0.0 0.98 9.3 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|389847421|ref|YP_006349660.1| - 0.25 11.2 0.0 0.4 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain TrkA_N PF02254.18 gi|662859504|ref|YP_006349659.2| - 1.8e-26 92.6 0.0 2.6e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|662859504|ref|YP_006349659.2| - 2.7e-12 46.3 0.1 4.8e-12 45.5 0.1 1.4 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|662859504|ref|YP_006349659.2| - 1.6e-06 27.8 0.1 2.3e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|662859504|ref|YP_006349659.2| - 2.8e-05 24.5 0.0 4.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|662859504|ref|YP_006349659.2| - 0.00041 20.0 0.3 0.00079 19.0 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|662859504|ref|YP_006349659.2| - 0.00077 18.9 0.0 0.0048 16.3 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|662859504|ref|YP_006349659.2| - 0.0011 18.3 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|662859504|ref|YP_006349659.2| - 0.0011 18.6 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|662859504|ref|YP_006349659.2| - 0.002 18.1 0.0 0.0035 17.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|662859504|ref|YP_006349659.2| - 0.0031 17.8 0.1 0.0047 17.2 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|662859504|ref|YP_006349659.2| - 0.008 16.4 0.0 0.019 15.2 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|662859504|ref|YP_006349659.2| - 0.0099 16.4 0.5 0.026 15.1 0.2 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase PrpR_N PF06506.11 gi|662859504|ref|YP_006349659.2| - 0.016 14.8 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Propionate catabolism activator Epimerase PF01370.21 gi|662859504|ref|YP_006349659.2| - 0.029 13.8 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family XdhC_C PF13478.6 gi|662859504|ref|YP_006349659.2| - 0.058 13.9 0.0 0.13 12.7 0.0 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain NAD_binding_10 PF13460.6 gi|662859504|ref|YP_006349659.2| - 0.092 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding ADH_zinc_N PF00107.26 gi|662859504|ref|YP_006349659.2| - 0.13 12.3 0.1 17 5.4 0.0 2.2 1 1 1 2 2 2 0 Zinc-binding dehydrogenase DUF2238 PF09997.9 gi|389847419|ref|YP_006349658.1| - 0.00068 19.4 5.7 0.014 15.2 2.0 2.3 1 1 1 2 2 2 2 Predicted membrane protein (DUF2238) YdjM PF04307.14 gi|662859503|ref|YP_006349657.2| - 3.8e-05 23.1 15.6 0.00024 20.4 14.8 2.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MFS_1 PF07690.16 gi|389847417|ref|YP_006349656.1| - 4.9e-52 177.0 70.8 5.5e-39 134.1 41.7 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|389847417|ref|YP_006349656.1| - 0.0055 15.3 24.1 0.0022 16.6 18.5 2.5 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|389847417|ref|YP_006349656.1| - 0.13 11.0 11.3 0.012 14.4 2.1 3.0 2 1 0 2 2 2 0 MFS_1 like family OATP PF03137.20 gi|389847417|ref|YP_006349656.1| - 1.3 7.2 9.6 0.47 8.7 0.4 2.6 2 2 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF4512 PF14975.6 gi|389847415|ref|YP_006349654.1| - 3 8.7 6.9 3.7 8.4 3.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4512) DUF716 PF04819.12 gi|389847414|ref|YP_006349653.1| - 0.29 10.8 5.0 0.49 10.0 4.8 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF716) Acetyltransf_3 PF13302.7 gi|389847413|ref|YP_006349652.1| - 2.9e-23 83.1 0.0 3.8e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389847413|ref|YP_006349652.1| - 9.2e-11 42.0 0.0 1.3e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|389847413|ref|YP_006349652.1| - 7.8e-10 39.1 0.0 9.9e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|389847413|ref|YP_006349652.1| - 1.1e-05 25.1 0.0 3.1e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|389847413|ref|YP_006349652.1| - 0.0044 16.6 0.0 0.0076 15.9 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_7 PF13508.7 gi|389847413|ref|YP_006349652.1| - 0.016 15.7 0.0 0.028 14.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389847413|ref|YP_006349652.1| - 0.02 14.8 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847413|ref|YP_006349652.1| - 0.024 14.6 0.0 0.1 12.6 0.0 1.9 1 1 0 1 1 1 0 FR47-like protein Phage_integrase PF00589.22 gi|662859502|ref|YP_006349648.2| - 7.5e-17 61.6 0.2 1.3e-16 60.9 0.2 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|662859502|ref|YP_006349648.2| - 0.036 14.5 0.1 0.036 14.5 0.1 2.8 4 0 0 4 4 4 0 Phage integrase, N-terminal SAM-like domain ECH_1 PF00378.20 gi|389847407|ref|YP_006349646.1| - 9.9e-34 116.8 0.0 1.3e-33 116.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389847407|ref|YP_006349646.1| - 6.8e-24 85.0 0.0 7.7e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase NAD_synthase PF02540.17 gi|389847406|ref|YP_006349645.1| - 8.3e-80 267.4 0.0 9.7e-80 267.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|389847406|ref|YP_006349645.1| - 3.4e-05 22.8 0.0 0.008 15.0 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|389847406|ref|YP_006349645.1| - 0.013 15.2 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|389847406|ref|YP_006349645.1| - 0.12 11.8 0.0 0.56 9.7 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DZR PF12773.7 gi|389847404|ref|YP_006349643.1| - 0.00068 19.6 0.7 0.00088 19.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|389847404|ref|YP_006349643.1| - 0.0016 18.1 3.4 0.0035 17.0 3.4 1.6 1 1 0 1 1 1 1 zinc-ribbon domain TniQ PF06527.11 gi|389847404|ref|YP_006349643.1| - 0.016 15.9 0.0 0.017 15.8 0.0 1.1 1 0 0 1 1 1 0 TniQ zf-ribbon_3 PF13248.6 gi|389847404|ref|YP_006349643.1| - 0.13 11.7 5.6 0.85 9.1 5.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389847404|ref|YP_006349643.1| - 0.16 11.5 0.5 0.16 11.5 0.5 1.6 1 1 1 2 2 2 0 TFIIB zinc-binding Hexapep PF00132.24 gi|389847403|ref|YP_006349642.1| - 1.1e-08 34.5 5.6 3.2e-05 23.5 0.8 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389847403|ref|YP_006349642.1| - 8.9e-05 22.2 3.9 0.0022 17.7 0.4 2.7 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Aldo_ket_red PF00248.21 gi|389847402|ref|YP_006349641.1| - 6.9e-51 173.2 0.0 8.1e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GHMP_kinases_C PF08544.13 gi|389847402|ref|YP_006349641.1| - 0.13 12.7 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 GHMP kinases C terminal JIP_LZII PF16471.5 gi|389847402|ref|YP_006349641.1| - 0.28 11.4 1.4 0.83 9.9 1.4 1.7 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Frankia_peptide PF14407.6 gi|389847402|ref|YP_006349641.1| - 5.4 7.1 6.6 3.2 7.8 0.3 3.4 3 2 0 3 3 3 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. DUF839 PF05787.13 gi|389847400|ref|YP_006349639.1| - 1.1e-22 80.9 11.1 1.1e-19 71.1 8.0 3.3 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) TAT_signal PF10518.9 gi|389847400|ref|YP_006349639.1| - 0.026 14.4 4.2 0.043 13.7 4.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SHOCT PF09851.9 gi|389847399|ref|YP_006349638.1| - 6.9e-08 32.0 0.6 6.9e-08 32.0 0.6 1.9 2 0 0 2 2 2 1 Short C-terminal domain CD225 PF04505.12 gi|389847399|ref|YP_006349638.1| - 0.0051 16.9 1.5 0.037 14.2 0.2 2.8 1 1 1 2 2 2 1 Interferon-induced transmembrane protein DUF1707 PF08044.11 gi|389847399|ref|YP_006349638.1| - 0.0096 16.0 1.1 0.017 15.2 0.8 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) HemY_N PF07219.13 gi|389847399|ref|YP_006349638.1| - 0.03 14.5 0.2 0.043 14.0 0.2 1.3 1 1 0 1 1 1 0 HemY protein N-terminus UbiA PF01040.18 gi|389847399|ref|YP_006349638.1| - 0.054 12.8 3.8 0.069 12.4 3.8 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family Chlor_dismutase PF06778.12 gi|389847397|ref|YP_006349636.1| - 1.5e-67 226.9 0.1 3.1e-67 225.9 0.1 1.6 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|389847397|ref|YP_006349636.1| - 3.7e-11 43.0 10.8 1.9e-10 40.7 0.0 4.2 5 0 0 5 5 5 2 Antibiotic biosynthesis monooxygenase IR1-M PF12185.8 gi|389847397|ref|YP_006349636.1| - 0.071 13.1 0.0 0.071 13.1 0.0 1.9 2 0 0 2 2 2 0 Nup358/RanBP2 E3 ligase domain Peptidase_M50 PF02163.22 gi|662859501|ref|YP_006349635.2| - 4.3e-22 78.6 0.0 1.2e-21 77.2 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|662859501|ref|YP_006349635.2| - 3.4e-20 72.1 2.4 3.7e-08 33.6 0.1 3.3 2 1 1 3 3 3 2 PDZ domain PDZ_6 PF17820.1 gi|662859501|ref|YP_006349635.2| - 2.7e-13 49.5 0.7 7.7e-09 35.3 0.4 3.4 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 gi|662859501|ref|YP_006349635.2| - 2e-07 31.3 0.3 2.8e-05 24.4 0.1 3.6 2 1 1 3 3 3 1 PDZ domain Tricorn_PDZ PF14685.6 gi|662859501|ref|YP_006349635.2| - 2.3e-07 30.7 1.0 0.00014 21.8 0.2 3.3 3 0 0 3 3 3 1 Tricorn protease PDZ domain DUF1761 PF08570.10 gi|662859501|ref|YP_006349635.2| - 0.035 14.4 0.0 0.23 11.7 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1761) DUF150_C PF17384.2 gi|662859501|ref|YP_006349635.2| - 0.18 12.0 0.0 0.51 10.5 0.0 1.7 1 0 0 1 1 1 0 RimP C-terminal SH3 domain DUF1616 PF07760.11 gi|389847395|ref|YP_006349634.1| - 0.079 12.3 0.1 0.098 12.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1616) SAPS PF04499.15 gi|389847395|ref|YP_006349634.1| - 2.3 6.9 6.2 2.7 6.7 6.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF3659 PF12396.8 gi|389847394|ref|YP_006349633.1| - 0.04 13.9 0.1 5.8 6.9 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) NDUF_B12 PF08122.12 gi|389847393|ref|YP_006349632.1| - 0.13 12.4 1.0 0.29 11.2 1.0 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family PGF-CTERM PF18204.1 gi|389847393|ref|YP_006349632.1| - 1.6 8.8 15.5 29 4.8 15.5 2.5 1 1 0 1 1 1 0 PGF-CTERM motif tRNA-synt_1f PF01921.18 gi|389847392|ref|YP_006349631.1| - 1.1e-102 343.7 0.0 2.5e-102 342.5 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|389847392|ref|YP_006349631.1| - 4.6e-08 32.2 0.0 1.9e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|389847392|ref|YP_006349631.1| - 0.00022 20.7 0.0 0.016 14.6 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain AA_kinase PF00696.28 gi|389847391|ref|YP_006349630.1| - 3.6e-25 89.0 6.8 1.1e-24 87.4 6.8 1.7 1 1 0 1 1 1 1 Amino acid kinase family MoaE PF02391.17 gi|389847390|ref|YP_006349629.1| - 7.2e-25 87.5 0.4 1.1e-24 86.9 0.4 1.3 1 0 0 1 1 1 1 MoaE protein MobB PF03205.14 gi|389847390|ref|YP_006349629.1| - 0.078 12.9 0.0 0.25 11.2 0.0 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IgG_binding_B PF01378.17 gi|662859500|ref|YP_006349628.2| - 0.055 13.5 0.2 0.75 9.9 0.0 2.1 2 0 0 2 2 2 0 B domain Peptidase_M50 PF02163.22 gi|389847388|ref|YP_006349627.1| - 2.1e-16 60.0 7.1 5.5e-08 32.4 3.2 2.3 1 1 1 2 2 2 2 Peptidase family M50 AIRS PF00586.24 gi|389847387|ref|YP_006349626.1| - 2.6e-16 60.0 3.9 6.7e-16 58.7 3.9 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|389847387|ref|YP_006349626.1| - 4.7e-09 36.6 0.2 1.1e-08 35.4 0.2 1.6 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain Talin_middle PF09141.10 gi|389847387|ref|YP_006349626.1| - 0.038 14.0 0.1 0.081 12.9 0.1 1.5 1 0 0 1 1 1 0 Talin, middle domain LPG_synthase_TM PF03706.13 gi|389847386|ref|YP_006349625.1| - 9.5e-37 127.1 37.4 1.1e-36 126.9 37.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Ribosomal_S19e PF01090.19 gi|389847385|ref|YP_006349624.1| - 1.2e-43 148.1 0.0 1.4e-43 147.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|389847385|ref|YP_006349624.1| - 0.003 17.5 0.1 0.0064 16.4 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|389847385|ref|YP_006349624.1| - 0.0058 16.9 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|389847385|ref|YP_006349624.1| - 0.0074 15.9 0.2 0.13 11.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|389847385|ref|YP_006349624.1| - 0.026 14.5 0.0 0.04 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|389847385|ref|YP_006349624.1| - 0.07 13.4 0.0 0.36 11.2 0.0 1.9 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) dsDNA_bind PF01984.20 gi|389847384|ref|YP_006349623.1| - 1.9e-27 95.7 19.8 2.2e-27 95.5 19.8 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.27 gi|389847384|ref|YP_006349623.1| - 0.035 14.6 0.9 0.1 13.1 0.9 1.9 1 1 0 1 1 1 0 PCI domain Lipase_chap PF03280.14 gi|389847384|ref|YP_006349623.1| - 0.055 13.4 22.4 0.064 13.2 22.4 1.1 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein RMI1_N PF08585.12 gi|389847384|ref|YP_006349623.1| - 0.2 11.4 6.1 0.25 11.1 6.1 1.1 1 0 0 1 1 1 0 RecQ mediated genome instability protein MSC PF09402.10 gi|389847384|ref|YP_006349623.1| - 0.21 11.0 6.4 0.24 10.8 6.4 1.0 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain cwf18 PF08315.12 gi|389847384|ref|YP_006349623.1| - 0.27 11.9 12.5 0.32 11.7 12.5 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor Arg_decarbox_C PF17944.1 gi|389847384|ref|YP_006349623.1| - 0.35 11.5 0.1 0.35 11.5 0.1 2.7 1 1 1 2 2 2 0 Arginine decarboxylase C-terminal helical extension Endonuc_Holl PF10107.9 gi|389847384|ref|YP_006349623.1| - 1.3 8.9 8.9 1.6 8.6 8.7 1.3 1 1 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase Prominin PF05478.11 gi|389847384|ref|YP_006349623.1| - 1.5 6.7 6.6 1.7 6.5 6.6 1.1 1 0 0 1 1 1 0 Prominin Asn_synthase PF00733.21 gi|389847383|ref|YP_006349622.1| - 0.0032 17.2 0.1 0.0049 16.6 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|389847383|ref|YP_006349622.1| - 0.0044 17.1 0.0 0.008 16.2 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|389847383|ref|YP_006349622.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|389847383|ref|YP_006349622.1| - 0.18 10.6 0.0 0.32 9.7 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase EamA PF00892.20 gi|389847382|ref|YP_006349621.1| - 2.2e-23 82.9 26.9 7.7e-13 48.8 13.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|389847382|ref|YP_006349621.1| - 0.036 14.1 0.2 0.036 14.1 0.2 2.8 3 0 0 3 3 3 0 Putative transmembrane family 234 TPT PF03151.16 gi|389847382|ref|YP_006349621.1| - 2.7 7.3 15.4 2.3 7.5 2.7 2.2 2 0 0 2 2 2 0 Triose-phosphate Transporter family tRNA-synt_His PF13393.6 gi|389847381|ref|YP_006349620.1| - 7.6e-46 156.8 0.2 1e-45 156.4 0.2 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|389847381|ref|YP_006349620.1| - 8.6e-15 54.7 0.1 1.7e-14 53.7 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|389847381|ref|YP_006349620.1| - 1.5e-08 34.8 0.0 1.7e-08 34.7 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|389847381|ref|YP_006349620.1| - 0.02 14.4 0.0 0.044 13.2 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) Flavodoxin_1 PF00258.25 gi|389847381|ref|YP_006349620.1| - 0.053 13.7 0.2 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 Flavodoxin Flavodoxin_5 PF12724.7 gi|389847381|ref|YP_006349620.1| - 0.1 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Usp PF00582.26 gi|389847380|ref|YP_006349619.1| - 8.8e-38 130.0 1.5 1e-37 129.8 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family PseudoU_synth_1 PF01416.20 gi|389847378|ref|YP_006349617.1| - 1.9e-15 57.3 0.0 7e-11 42.6 0.0 2.4 2 0 0 2 2 2 2 tRNA pseudouridine synthase Jag_N PF14804.6 gi|389847378|ref|YP_006349617.1| - 0.14 12.5 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 Jag N-terminus HAD_2 PF13419.6 gi|389847377|ref|YP_006349616.1| - 7.5e-19 68.5 0.0 9.4e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389847377|ref|YP_006349616.1| - 2.1e-10 41.2 0.3 3.4e-09 37.3 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389847377|ref|YP_006349616.1| - 6.9e-10 38.9 0.0 1.7e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Peptidase_M28 PF04389.17 gi|389847375|ref|YP_006349614.1| - 1.8e-29 102.8 0.5 2.8e-29 102.2 0.5 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|389847375|ref|YP_006349614.1| - 1.5e-11 44.2 0.0 3.3e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.14 gi|389847375|ref|YP_006349614.1| - 0.00093 18.3 0.2 0.0016 17.5 0.2 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|389847375|ref|YP_006349614.1| - 0.0042 16.8 0.7 0.02 14.6 0.7 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M3 PF01432.20 gi|389847374|ref|YP_006349613.1| - 2.9e-69 234.5 5.3 2.9e-69 234.5 5.3 1.9 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|389847374|ref|YP_006349613.1| - 4.3e-24 84.6 1.5 4.3e-24 84.6 1.5 2.8 3 0 0 3 3 3 1 Oligopeptidase F PMC2NT PF08066.12 gi|389847374|ref|YP_006349613.1| - 0.24 12.1 3.6 0.52 11.0 0.0 3.1 3 1 0 3 3 3 0 PMC2NT (NUC016) domain HR1 PF02185.16 gi|389847374|ref|YP_006349613.1| - 0.35 11.0 2.5 0.82 9.8 2.5 1.6 1 0 0 1 1 1 0 Hr1 repeat Usp PF00582.26 gi|389847373|ref|YP_006349612.1| - 1.1e-24 87.6 0.2 1.8e-24 86.9 0.2 1.4 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|389847373|ref|YP_006349612.1| - 0.042 13.7 0.7 0.13 12.2 0.7 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein domain ETF PF01012.21 gi|389847371|ref|YP_006349610.1| - 4.5e-39 134.2 0.2 5.4e-39 133.9 0.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ABATE PF07336.11 gi|389847371|ref|YP_006349610.1| - 0.028 15.1 4.0 0.059 14.0 4.0 1.5 1 0 0 1 1 1 0 Putative stress-induced transcription regulator ETF PF01012.21 gi|389847370|ref|YP_006349609.1| - 2.1e-44 151.6 3.1 2.1e-44 151.6 3.1 2.1 1 1 1 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|389847370|ref|YP_006349609.1| - 1.9e-31 107.9 1.4 4e-31 106.9 1.4 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain DAO PF01266.24 gi|389847369|ref|YP_006349608.1| - 2.1e-13 50.6 8.7 2.9e-06 27.1 2.7 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|389847369|ref|YP_006349608.1| - 1.5e-11 44.3 0.2 2.2e-11 43.8 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|389847369|ref|YP_006349608.1| - 2.5e-10 40.1 5.4 7.2e-10 38.6 5.4 1.7 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|389847369|ref|YP_006349608.1| - 2.7e-10 39.9 2.7 3.8e-08 32.8 0.1 2.8 3 1 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|389847369|ref|YP_006349608.1| - 9.2e-09 34.9 0.0 1.7e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389847369|ref|YP_006349608.1| - 2.9e-08 32.9 0.9 4.9e-05 22.2 0.4 2.1 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|389847369|ref|YP_006349608.1| - 3.7e-08 32.9 0.0 6.8e-08 32.0 0.0 1.4 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|389847369|ref|YP_006349608.1| - 5.2e-07 29.8 0.1 1.7e-06 28.1 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|389847369|ref|YP_006349608.1| - 4.3e-06 26.1 0.0 1.9e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|389847369|ref|YP_006349608.1| - 5.9e-06 25.6 1.9 0.00013 21.1 1.8 2.3 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|389847369|ref|YP_006349608.1| - 0.0018 18.8 0.4 0.2 12.2 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389847369|ref|YP_006349608.1| - 0.0039 16.5 0.7 0.035 13.3 0.3 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|389847369|ref|YP_006349608.1| - 0.0051 15.7 1.3 0.61 8.9 0.0 2.3 1 1 1 2 2 2 2 Tryptophan halogenase GMC_oxred_N PF00732.19 gi|389847369|ref|YP_006349608.1| - 0.011 15.2 0.1 1 8.7 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.18 gi|389847369|ref|YP_006349608.1| - 0.12 12.2 0.2 0.23 11.3 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ETF_QO PF05187.13 gi|389847368|ref|YP_006349607.1| - 2e-10 40.7 1.2 2.5e-10 40.4 1.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_10 PF13237.6 gi|389847368|ref|YP_006349607.1| - 2.1e-07 30.9 22.0 5e-06 26.5 12.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389847368|ref|YP_006349607.1| - 6.5e-07 29.4 10.6 9.4e-07 28.9 10.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|389847368|ref|YP_006349607.1| - 9.9e-06 25.4 13.6 0.0021 18.0 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|389847368|ref|YP_006349607.1| - 3.5e-05 24.2 3.8 0.027 14.9 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389847368|ref|YP_006349607.1| - 7.6e-05 23.2 12.5 0.004 17.7 14.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|389847368|ref|YP_006349607.1| - 0.0011 19.5 11.0 0.037 14.6 1.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389847368|ref|YP_006349607.1| - 0.0012 19.8 5.8 0.43 11.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|389847368|ref|YP_006349607.1| - 0.0021 18.4 10.9 0.035 14.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389847368|ref|YP_006349607.1| - 0.0064 16.5 12.6 0.13 12.4 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|389847368|ref|YP_006349607.1| - 0.011 15.5 6.1 0.014 15.2 0.5 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|389847368|ref|YP_006349607.1| - 0.027 14.6 11.8 0.15 12.2 1.1 2.0 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389847368|ref|YP_006349607.1| - 0.03 14.1 15.0 0.058 13.2 2.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain LBR_tudor PF09465.10 gi|389847368|ref|YP_006349607.1| - 0.037 13.8 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain YokU PF14122.6 gi|389847368|ref|YP_006349607.1| - 0.82 9.7 5.5 4.1 7.4 6.2 1.6 2 0 0 2 2 2 0 YokU-like protein, putative antitoxin Fer4_3 PF12798.7 gi|389847368|ref|YP_006349607.1| - 1.1 10.4 15.7 3.6 8.8 4.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M20 PF01546.28 gi|389847367|ref|YP_006349606.1| - 5e-27 94.9 1.0 6.4e-27 94.6 1.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|389847367|ref|YP_006349606.1| - 8.5e-06 25.6 0.0 2.8e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|389847367|ref|YP_006349606.1| - 0.00041 20.1 0.5 0.0069 16.1 0.2 2.1 2 0 0 2 2 2 1 Peptidase family M28 HTH_ParB PF17762.1 gi|389847366|ref|YP_006349605.1| - 0.01 15.6 0.2 0.016 15.0 0.2 1.3 1 0 0 1 1 1 0 HTH domain found in ParB protein NIR_SIR PF01077.22 gi|389847363|ref|YP_006349602.1| - 1.4e-46 157.9 0.1 2.9e-35 121.1 0.0 2.6 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|389847363|ref|YP_006349602.1| - 1.8e-38 130.2 0.2 2.6e-18 65.6 0.1 3.4 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain EamA PF00892.20 gi|389847361|ref|YP_006349600.1| - 5e-35 120.7 31.7 2.3e-19 69.9 10.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family UPF0060 PF02694.15 gi|389847361|ref|YP_006349600.1| - 0.02 15.1 2.6 0.02 15.1 2.6 2.4 2 0 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family TMEM234 PF10639.9 gi|389847361|ref|YP_006349600.1| - 0.16 12.0 4.1 0.43 10.6 0.2 2.5 2 0 0 2 2 2 0 Putative transmembrane family 234 ABC2_membrane_5 PF13346.6 gi|389847360|ref|YP_006349599.1| - 9.3e-05 22.1 0.1 9.3e-05 22.1 0.1 2.9 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389847360|ref|YP_006349599.1| - 0.00029 20.1 4.2 0.00029 20.1 4.2 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|389847360|ref|YP_006349599.1| - 0.00043 19.6 15.8 0.0099 15.2 4.5 3.1 3 0 0 3 3 3 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389847359|ref|YP_006349598.1| - 6.2e-29 101.3 0.0 2.2e-28 99.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389847359|ref|YP_006349598.1| - 3.2e-09 37.0 0.5 0.00093 19.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389847359|ref|YP_006349598.1| - 0.00014 21.6 0.2 0.00026 20.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|389847359|ref|YP_006349598.1| - 0.0078 16.7 0.3 0.014 15.9 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|389847359|ref|YP_006349598.1| - 0.026 14.3 1.3 0.51 10.0 1.3 2.4 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|389847359|ref|YP_006349598.1| - 0.06 13.1 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal Rad17 PF03215.15 gi|389847359|ref|YP_006349598.1| - 0.091 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 gi|389847359|ref|YP_006349598.1| - 0.13 11.7 0.0 0.4 10.1 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|389847359|ref|YP_006349598.1| - 0.18 11.4 0.0 0.34 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain EamA PF00892.20 gi|389847357|ref|YP_006349596.1| - 1.7e-44 151.3 34.5 2.4e-22 79.6 12.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF2892 PF11127.8 gi|389847357|ref|YP_006349596.1| - 0.78 9.8 0.0 0.78 9.8 0.0 5.8 2 1 5 7 7 7 0 Protein of unknown function (DUF2892) AsnC_trans_reg PF01037.21 gi|389847356|ref|YP_006349595.1| - 4.1e-11 42.7 0.2 6.8e-11 42.0 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|389847356|ref|YP_006349595.1| - 1.5e-05 24.4 0.1 4.8e-05 22.8 0.0 1.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389847356|ref|YP_006349595.1| - 0.00076 19.2 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389847356|ref|YP_006349595.1| - 0.0031 17.4 0.0 0.0061 16.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389847356|ref|YP_006349595.1| - 0.0035 17.4 0.0 0.0091 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GYD PF08734.11 gi|389847356|ref|YP_006349595.1| - 0.014 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 GYD domain HTH_5 PF01022.20 gi|389847356|ref|YP_006349595.1| - 0.032 14.1 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PAS_9 PF13426.7 gi|662859499|ref|YP_006349593.2| - 1.5e-26 92.7 0.3 4.8e-11 42.8 0.0 4.2 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.12 gi|662859499|ref|YP_006349593.2| - 3.2e-21 75.4 0.2 7.1e-08 32.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|662859499|ref|YP_006349593.2| - 1.2e-16 61.3 0.2 5.5e-16 59.1 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|662859499|ref|YP_006349593.2| - 3.1e-16 59.6 10.6 4.2e-07 30.2 0.1 4.2 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|662859499|ref|YP_006349593.2| - 9.7e-14 51.0 0.1 2.5e-05 24.2 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|662859499|ref|YP_006349593.2| - 2.5e-08 33.9 0.6 0.00015 21.8 0.0 3.4 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.6 gi|662859499|ref|YP_006349593.2| - 1.4e-07 31.5 0.9 6.4e-07 29.4 0.1 2.5 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|662859499|ref|YP_006349593.2| - 2.1e-05 24.4 1.5 0.0001 22.3 0.2 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|662859499|ref|YP_006349593.2| - 0.0001 21.9 0.2 0.00032 20.3 0.1 1.9 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|662859499|ref|YP_006349593.2| - 0.0033 17.3 0.0 0.0066 16.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain Response_reg PF00072.24 gi|662859499|ref|YP_006349593.2| - 0.092 12.9 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 Response regulator receiver domain SHOCT PF09851.9 gi|389847353|ref|YP_006349592.1| - 1.9e-09 37.0 2.9 2.7e-09 36.5 2.9 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|389847353|ref|YP_006349592.1| - 0.00033 20.6 2.0 0.00054 20.0 2.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|389847353|ref|YP_006349592.1| - 0.016 15.2 0.2 0.022 14.7 0.2 1.2 1 0 0 1 1 1 0 Gas vesicle protein G DUF4381 PF14316.6 gi|389847353|ref|YP_006349592.1| - 0.21 11.8 0.0 0.21 11.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Beta-Casp PF10996.8 gi|662859498|ref|YP_006349591.2| - 6.7e-15 55.3 0.0 1.3e-14 54.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|662859498|ref|YP_006349591.2| - 1.4e-11 44.2 0.1 4e-11 42.7 0.0 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|662859498|ref|YP_006349591.2| - 5.3e-09 36.4 6.8 1.5e-08 34.9 6.8 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|662859498|ref|YP_006349591.2| - 5.8e-07 29.2 1.3 1.1e-06 28.3 1.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|662859498|ref|YP_006349591.2| - 0.00083 18.8 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|662859498|ref|YP_006349591.2| - 0.019 14.8 0.4 0.08 12.8 0.3 2.1 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Rhodanese PF00581.20 gi|662859498|ref|YP_006349591.2| - 0.037 14.6 0.0 0.15 12.6 0.0 2.0 2 0 0 2 2 2 0 Rhodanese-like domain Flexi_CP_N PF08358.10 gi|662859498|ref|YP_006349591.2| - 0.052 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Carlavirus coat DUF3348 PF11828.8 gi|389847351|ref|YP_006349590.1| - 0.031 14.0 1.3 0.063 12.9 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3348) Lycopene_cycl PF05834.12 gi|389847350|ref|YP_006349589.1| - 1.1e-08 34.6 0.0 1.4e-05 24.3 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|389847350|ref|YP_006349589.1| - 1.2e-08 35.0 0.5 0.0013 18.4 0.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|389847350|ref|YP_006349589.1| - 9.3e-08 31.3 0.0 0.00057 18.8 0.0 2.8 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|389847350|ref|YP_006349589.1| - 1.8e-07 30.8 0.0 3.8e-06 26.4 0.0 2.3 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|389847350|ref|YP_006349589.1| - 8.2e-07 28.7 0.3 3.1e-06 26.8 0.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|389847350|ref|YP_006349589.1| - 2.1e-05 23.9 0.1 6.6e-05 22.3 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|389847350|ref|YP_006349589.1| - 8.1e-05 21.9 0.1 0.00021 20.5 0.1 1.6 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|389847350|ref|YP_006349589.1| - 0.00032 19.9 0.0 0.05 12.7 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|389847350|ref|YP_006349589.1| - 0.00038 19.8 0.1 0.0018 17.6 0.1 2.0 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|389847350|ref|YP_006349589.1| - 0.00049 18.9 0.0 0.0092 14.7 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|389847350|ref|YP_006349589.1| - 0.019 15.2 0.2 0.074 13.3 0.2 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|389847350|ref|YP_006349589.1| - 0.079 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M10 PF00413.24 gi|389847348|ref|YP_006349587.1| - 1.5e-08 34.6 0.0 0.00099 19.0 0.0 2.3 2 0 0 2 2 2 2 Matrixin Reprolysin_4 PF13583.6 gi|389847348|ref|YP_006349587.1| - 0.0059 16.3 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|389847348|ref|YP_006349587.1| - 0.018 15.5 0.0 0.04 14.4 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|389847348|ref|YP_006349587.1| - 0.028 13.4 0.3 0.045 12.7 0.3 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_5 PF13688.6 gi|389847348|ref|YP_006349587.1| - 0.033 14.3 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M57 PF12388.8 gi|389847348|ref|YP_006349587.1| - 0.044 13.4 0.2 0.095 12.3 0.2 1.5 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Astacin PF01400.24 gi|389847348|ref|YP_006349587.1| - 0.047 13.3 0.3 0.1 12.2 0.2 1.6 1 1 1 2 2 2 0 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.11 gi|389847348|ref|YP_006349587.1| - 0.085 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M54 AMMECR1 PF01871.17 gi|389847347|ref|YP_006349586.1| - 4.2e-41 140.3 0.0 4.7e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.19 gi|389847346|ref|YP_006349585.1| - 2e-15 57.0 0.0 2.8e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|389847346|ref|YP_006349585.1| - 0.0065 16.5 0.0 0.028 14.5 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|389847346|ref|YP_006349585.1| - 0.013 15.9 0.0 0.95 9.9 0.0 2.3 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Peptidase_M78 PF06114.13 gi|389847344|ref|YP_006349583.1| - 0.0048 16.8 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 IrrE N-terminal-like domain Peptidase_M76 PF09768.9 gi|389847344|ref|YP_006349583.1| - 0.22 11.3 0.0 0.37 10.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase M76 family Isochorismatase PF00857.20 gi|662859497|ref|YP_006349581.2| - 2.9e-47 161.1 0.1 3.2e-47 160.9 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family 4HBT PF03061.22 gi|662859496|ref|YP_006349580.2| - 2.8e-13 50.0 0.1 4.5e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|662859496|ref|YP_006349580.2| - 1.8e-08 34.6 0.0 2.1e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) D-ser_dehydrat PF14031.6 gi|662859496|ref|YP_006349580.2| - 0.11 13.2 0.0 0.3 11.8 0.0 1.7 2 1 0 2 2 2 0 Putative serine dehydratase domain PAS PF00989.25 gi|389847340|ref|YP_006349579.1| - 5.3e-37 126.3 2.5 6.2e-16 58.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|389847340|ref|YP_006349579.1| - 6.7e-34 116.4 6.3 2.3e-14 53.5 0.1 3.7 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|389847340|ref|YP_006349579.1| - 3.5e-29 100.9 1.5 3e-13 49.9 0.2 3.6 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|389847340|ref|YP_006349579.1| - 5.8e-27 94.0 0.8 2.8e-09 37.2 0.1 3.8 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|389847340|ref|YP_006349579.1| - 1.2e-18 67.7 0.0 2.6e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|389847340|ref|YP_006349579.1| - 1.3e-13 50.6 4.3 3.9e-07 29.9 0.0 4.4 5 0 0 5 5 4 2 PAS domain PAS_7 PF12860.7 gi|389847340|ref|YP_006349579.1| - 8e-13 48.6 2.4 0.00049 20.2 0.1 3.9 3 0 0 3 3 3 3 PAS fold PAS_10 PF13596.6 gi|389847340|ref|YP_006349579.1| - 1.4e-11 44.9 0.6 7.3e-05 23.3 0.1 3.7 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|389847340|ref|YP_006349579.1| - 2.9e-10 40.6 0.3 3.4e-09 37.1 0.0 3.0 4 0 0 4 4 3 1 GAF domain HisKA PF00512.25 gi|389847340|ref|YP_006349579.1| - 3.1e-10 39.9 0.4 3.1e-10 39.9 0.4 3.1 5 1 0 5 5 4 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|389847340|ref|YP_006349579.1| - 0.0016 18.8 0.4 0.14 12.5 0.0 3.0 3 0 0 3 3 3 1 GAF domain OKR_DC_1_N PF03709.15 gi|389847340|ref|YP_006349579.1| - 0.0023 18.2 0.1 0.0095 16.2 0.0 2.2 2 0 0 2 2 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_11 PF14598.6 gi|389847340|ref|YP_006349579.1| - 0.0048 17.0 0.0 0.42 10.8 0.0 2.6 2 0 0 2 2 2 1 PAS domain UPF0180 PF03698.13 gi|389847340|ref|YP_006349579.1| - 0.036 14.3 0.0 0.13 12.5 0.0 2.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DUF3391 PF11871.8 gi|389847340|ref|YP_006349579.1| - 0.037 14.6 1.0 0.037 14.6 1.0 2.8 4 0 0 4 4 3 0 Domain of unknown function (DUF3391) Amidase_2 PF01510.25 gi|389847340|ref|YP_006349579.1| - 0.12 12.8 0.1 2.8 8.4 0.0 2.5 2 0 0 2 2 2 0 N-acetylmuramoyl-L-alanine amidase PAS_2 PF08446.11 gi|389847340|ref|YP_006349579.1| - 0.18 12.5 0.1 9.8 6.9 0.0 3.1 3 0 0 3 3 3 0 PAS fold PfkB PF00294.24 gi|662859495|ref|YP_006349578.2| - 0.00033 20.1 1.0 0.0019 17.5 0.8 1.9 2 0 0 2 2 2 1 pfkB family carbohydrate kinase BAT PF15915.5 gi|389847338|ref|YP_006349577.1| - 4.4e-16 59.1 0.1 6.3e-16 58.6 0.1 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|389847338|ref|YP_006349577.1| - 5.9e-16 58.0 0.1 9.2e-16 57.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|389847338|ref|YP_006349577.1| - 5.6e-06 25.8 0.2 9.9e-06 25.0 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|389847338|ref|YP_006349577.1| - 0.01 15.5 0.2 0.023 14.4 0.1 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|389847338|ref|YP_006349577.1| - 0.043 13.9 0.1 0.1 12.7 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|389847338|ref|YP_006349577.1| - 0.045 13.6 0.0 0.099 12.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|389847338|ref|YP_006349577.1| - 0.058 13.3 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_Tnp_1_2 PF13022.6 gi|389847338|ref|YP_006349577.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Homeodomain PF00046.29 gi|389847338|ref|YP_006349577.1| - 0.16 11.9 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 Homeodomain Peptidase_M23 PF01551.22 gi|389847337|ref|YP_006349576.1| - 0.028 14.6 0.0 0.4 10.9 0.0 2.6 3 0 0 3 3 3 0 Peptidase family M23 BPL_LplA_LipB PF03099.19 gi|662859494|ref|YP_006349575.2| - 0.021 14.7 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Amidohydro_1 PF01979.20 gi|389847335|ref|YP_006349574.1| - 1.6e-21 77.0 0.0 4.8e-21 75.4 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|389847335|ref|YP_006349574.1| - 4e-15 56.3 4.6 2.7e-06 27.1 0.0 3.2 3 0 0 3 3 3 3 Amidohydrolase family DHOase PF12890.7 gi|389847335|ref|YP_006349574.1| - 0.014 15.4 0.0 0.045 13.7 0.0 1.9 1 1 0 1 1 1 0 Dihydro-orotase-like TatD_DNase PF01026.21 gi|389847335|ref|YP_006349574.1| - 0.1 12.0 0.0 2.2 7.6 0.0 2.2 1 1 0 1 1 1 0 TatD related DNase DUF1949 PF09186.11 gi|389847334|ref|YP_006349573.1| - 0.05 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) AC_N PF16214.5 gi|389847333|ref|YP_006349572.1| - 7.6 5.5 6.1 11 5.1 6.1 1.2 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region Usp PF00582.26 gi|389847332|ref|YP_006349571.1| - 2.3e-13 50.9 1.0 3e-11 44.0 1.0 2.0 1 1 0 1 1 1 1 Universal stress protein family NBD_C PF17042.5 gi|389847332|ref|YP_006349571.1| - 0.027 15.0 0.1 0.037 14.6 0.1 1.1 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain DUF5351 PF17302.2 gi|389847332|ref|YP_006349571.1| - 0.43 10.8 0.1 0.43 10.8 0.1 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5351) Acetyltransf_1 PF00583.25 gi|389847331|ref|YP_006349570.1| - 2.2e-18 66.6 0.0 3e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389847331|ref|YP_006349570.1| - 2.5e-13 50.1 0.0 3.3e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389847331|ref|YP_006349570.1| - 1.6e-10 41.3 0.0 2.7e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389847331|ref|YP_006349570.1| - 1.2e-06 29.3 0.0 1.5e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847331|ref|YP_006349570.1| - 3.4e-06 26.9 0.0 5.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|389847331|ref|YP_006349570.1| - 3.5e-06 27.1 0.1 0.053 13.6 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|389847331|ref|YP_006349570.1| - 0.026 14.7 0.2 0.037 14.2 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389847331|ref|YP_006349570.1| - 0.077 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_16 PF05301.11 gi|389847331|ref|YP_006349570.1| - 0.082 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Acetyltransf_4 PF13420.7 gi|389847331|ref|YP_006349570.1| - 0.095 12.8 0.0 0.15 12.2 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|389847331|ref|YP_006349570.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Usp PF00582.26 gi|389847330|ref|YP_006349569.1| - 4.7e-12 46.6 5.8 4.9e-11 43.3 5.8 2.1 1 1 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|662859493|ref|YP_006349568.2| - 2.5e-34 118.8 4.8 2.9e-34 118.6 4.8 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF3280 PF11684.8 gi|662859493|ref|YP_006349568.2| - 0.045 14.2 0.8 0.089 13.2 0.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2380) DNA_photolyase PF00875.18 gi|662859493|ref|YP_006349568.2| - 0.053 13.5 0.1 0.076 13.0 0.1 1.2 1 0 0 1 1 1 0 DNA photolyase DHHA1 PF02272.19 gi|389847328|ref|YP_006349567.1| - 0.053 13.9 1.8 0.23 11.9 0.0 2.9 3 1 1 4 4 4 0 DHHA1 domain LysM PF01476.20 gi|389847326|ref|YP_006349565.1| - 0.15 12.1 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 LysM domain Ribosomal_S6e PF01092.19 gi|389847325|ref|YP_006349564.1| - 4.6e-37 126.8 0.0 5.6e-37 126.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e DUF5538 PF17692.1 gi|389847324|ref|YP_006349563.1| - 0.00056 20.0 0.1 0.00076 19.5 0.1 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5538) Zn_Tnp_IS1595 PF12760.7 gi|389847324|ref|YP_006349563.1| - 0.015 15.3 0.9 0.75 9.8 0.2 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF1272 PF06906.11 gi|389847324|ref|YP_006349563.1| - 0.016 15.3 0.2 0.016 15.3 0.2 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) HypA PF01155.19 gi|389847324|ref|YP_006349563.1| - 0.096 12.7 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|389847324|ref|YP_006349563.1| - 0.15 12.2 2.6 0.39 10.9 2.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-ACC PF17848.1 gi|389847324|ref|YP_006349563.1| - 0.34 11.0 2.9 8.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF2387 PF09526.10 gi|389847324|ref|YP_006349563.1| - 3.8 7.7 4.9 5.4 7.2 0.2 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) HIPIP PF01355.17 gi|389847323|ref|YP_006349562.1| - 1.8e-06 28.2 3.2 3.5e-06 27.2 3.2 1.5 1 0 0 1 1 1 1 High potential iron-sulfur protein Peptidase_M29 PF02073.15 gi|389847322|ref|YP_006349561.1| - 4e-66 223.5 0.1 4.6e-66 223.3 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) 3HCDH_RFF PF18321.1 gi|389847322|ref|YP_006349561.1| - 0.032 14.7 0.8 0.23 11.9 0.4 2.6 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain UPF0146 PF03686.13 gi|389847322|ref|YP_006349561.1| - 0.046 13.6 0.2 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) X PF00739.19 gi|389847322|ref|YP_006349561.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Trans-activation protein X NAD_binding_2 PF03446.15 gi|389847321|ref|YP_006349560.1| - 2.2e-37 128.7 0.1 3.2e-37 128.1 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|389847321|ref|YP_006349560.1| - 9.1e-24 84.3 0.0 1.3e-23 83.8 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|389847321|ref|YP_006349560.1| - 2.5e-05 24.8 0.0 4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|389847321|ref|YP_006349560.1| - 9.6e-05 22.3 0.1 0.00015 21.7 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|389847321|ref|YP_006349560.1| - 0.00043 19.7 0.0 0.0006 19.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389847321|ref|YP_006349560.1| - 0.00048 20.4 0.1 0.00088 19.5 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_11 PF14833.6 gi|389847321|ref|YP_006349560.1| - 0.00061 20.0 0.3 0.0074 16.5 0.0 2.6 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_10 PF13460.6 gi|389847321|ref|YP_006349560.1| - 0.006 16.5 1.8 0.99 9.3 1.6 2.9 2 1 0 2 2 2 1 NAD(P)H-binding DapB_N PF01113.20 gi|389847321|ref|YP_006349560.1| - 0.062 13.4 1.4 0.15 12.1 1.4 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.14 gi|389847321|ref|YP_006349560.1| - 0.07 12.7 0.0 0.17 11.5 0.1 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Gp_dh_N PF00044.24 gi|389847321|ref|YP_006349560.1| - 0.17 12.3 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|389847321|ref|YP_006349560.1| - 0.23 11.7 0.6 1.9 8.7 0.6 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Fer2 PF00111.27 gi|389847320|ref|YP_006349559.1| - 2.2e-12 46.8 0.3 2.2e-12 46.8 0.3 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain MatE PF01554.18 gi|662859492|ref|YP_006349558.2| - 9e-60 201.0 38.3 6.1e-34 117.0 18.2 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|662859492|ref|YP_006349558.2| - 8.9e-07 29.1 10.7 8.9e-07 29.1 10.7 5.0 3 2 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain TrmB PF01978.19 gi|389847318|ref|YP_006349557.1| - 2.2e-07 30.6 0.0 3.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|389847318|ref|YP_006349557.1| - 0.0092 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389847318|ref|YP_006349557.1| - 0.012 15.7 0.1 0.033 14.2 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389847318|ref|YP_006349557.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389847318|ref|YP_006349557.1| - 0.024 14.5 0.1 0.071 13.0 0.0 1.8 2 0 0 2 2 2 0 MarR family MarR PF01047.22 gi|389847318|ref|YP_006349557.1| - 0.058 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family PIN_12 PF16289.5 gi|389847317|ref|YP_006349556.1| - 0.0092 16.5 0.0 0.06 13.8 0.0 1.8 1 1 1 2 2 2 1 PIN domain PIN_3 PF13470.6 gi|389847317|ref|YP_006349556.1| - 0.011 16.5 0.2 0.021 15.6 0.2 1.6 1 1 0 1 1 1 0 PIN domain DUF4352 PF11611.8 gi|389847316|ref|YP_006349555.1| - 4.5e-08 33.4 0.0 0.01 16.1 0.0 3.1 3 1 0 3 3 3 2 Domain of unknown function (DUF4352) CARDB PF07705.11 gi|389847316|ref|YP_006349555.1| - 0.0038 17.4 0.1 0.012 15.8 0.1 1.9 1 0 0 1 1 1 1 CARDB Fic PF02661.18 gi|389847315|ref|YP_006349554.1| - 2.6e-20 73.1 0.0 1.2e-19 71.0 0.0 2.1 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.6 gi|389847315|ref|YP_006349554.1| - 2.7e-20 72.2 0.4 4.6e-20 71.4 0.4 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal TrmB PF01978.19 gi|389847315|ref|YP_006349554.1| - 2.5e-08 33.7 0.0 6e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389847315|ref|YP_006349554.1| - 5.5e-07 29.4 0.0 1.4e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389847315|ref|YP_006349554.1| - 8.8e-05 22.4 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389847315|ref|YP_006349554.1| - 0.0001 22.3 0.0 0.00025 21.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|389847315|ref|YP_006349554.1| - 0.022 14.3 0.0 0.06 12.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|389847315|ref|YP_006349554.1| - 0.032 14.7 0.0 0.6 10.7 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.22 gi|389847315|ref|YP_006349554.1| - 0.035 14.1 0.0 0.081 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|389847315|ref|YP_006349554.1| - 0.037 13.8 0.0 0.19 11.5 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF4172 PF13776.6 gi|389847315|ref|YP_006349554.1| - 0.046 14.0 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) HTH_5 PF01022.20 gi|389847315|ref|YP_006349554.1| - 0.057 13.3 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FUR PF01475.19 gi|389847315|ref|YP_006349554.1| - 0.06 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family DUF2250 PF10007.9 gi|389847315|ref|YP_006349554.1| - 0.074 13.2 0.0 0.27 11.4 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.6 gi|389847315|ref|YP_006349554.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain PadR PF03551.14 gi|389847315|ref|YP_006349554.1| - 0.12 12.3 0.0 0.45 10.5 0.0 1.9 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|389847315|ref|YP_006349554.1| - 0.17 12.3 0.0 0.4 11.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator NTP_transf_2 PF01909.23 gi|389847314|ref|YP_006349553.1| - 2.4e-08 34.2 0.2 4.9e-08 33.2 0.2 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|389847314|ref|YP_006349553.1| - 2.1e-07 30.9 0.0 4.9e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_11 PF08279.12 gi|389847314|ref|YP_006349553.1| - 5.5e-07 29.4 0.0 9.9e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|389847314|ref|YP_006349553.1| - 1.9e-06 27.7 0.0 4.5e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|389847314|ref|YP_006349553.1| - 0.0037 17.0 0.0 0.0073 16.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389847314|ref|YP_006349553.1| - 0.012 15.2 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF294 PF03445.13 gi|389847314|ref|YP_006349553.1| - 0.037 13.8 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MarR_2 PF12802.7 gi|389847314|ref|YP_006349553.1| - 0.085 12.8 0.2 0.16 11.9 0.2 1.4 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|389847314|ref|YP_006349553.1| - 0.089 12.6 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Adenyl_cycl_N PF12633.7 gi|389847314|ref|YP_006349553.1| - 0.17 11.8 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain DUF1338 PF07063.13 gi|662859491|ref|YP_006349552.2| - 0.09 11.9 0.0 0.093 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) peroxidase PF00141.23 gi|389847312|ref|YP_006349551.1| - 1.4e-85 286.6 0.0 4.2e-47 160.8 0.0 2.2 2 0 0 2 2 2 2 Peroxidase STI1 PF17830.1 gi|389847312|ref|YP_006349551.1| - 0.041 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 STI1 domain DUF4013 PF13197.6 gi|389847310|ref|YP_006349549.1| - 1.1e-37 129.5 18.0 1.1e-37 129.5 18.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Spore_YtfJ PF09579.10 gi|389847310|ref|YP_006349549.1| - 0.22 11.7 4.4 0.68 10.1 4.4 1.8 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) Adeno_E3B PF03376.14 gi|389847310|ref|YP_006349549.1| - 0.51 10.6 0.1 0.51 10.6 0.1 3.1 4 0 0 4 4 4 0 Adenovirus E3B protein HTH_10 PF04967.12 gi|662859490|ref|YP_006349547.2| - 2.7e-18 65.5 0.1 4.3e-18 64.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|662859490|ref|YP_006349547.2| - 0.0031 17.4 0.1 0.011 15.6 0.0 1.9 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_20 PF12840.7 gi|662859490|ref|YP_006349547.2| - 0.0049 16.9 0.0 0.0091 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|662859490|ref|YP_006349547.2| - 0.027 14.4 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|662859490|ref|YP_006349547.2| - 0.037 13.5 0.1 0.077 12.5 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|662859490|ref|YP_006349547.2| - 0.069 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|662859490|ref|YP_006349547.2| - 0.12 12.4 0.0 0.34 10.9 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_1 PF00126.27 gi|662859490|ref|YP_006349547.2| - 0.15 12.0 0.0 0.66 10.0 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family PuR_N PF09182.10 gi|662859490|ref|YP_006349547.2| - 0.17 11.9 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal SBP_bac_5 PF00496.22 gi|389847307|ref|YP_006349546.1| - 5.1e-59 200.1 1.3 1.2e-57 195.6 0.9 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389847307|ref|YP_006349546.1| - 0.0059 16.4 1.2 0.0059 16.4 1.2 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|389847307|ref|YP_006349546.1| - 0.074 12.4 0.5 0.16 11.3 0.5 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SBP_bac_3 PF00497.20 gi|389847307|ref|YP_006349546.1| - 0.1 12.0 0.0 0.24 10.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 CoA_transf_3 PF02515.17 gi|662859489|ref|YP_006349545.2| - 1.5e-117 392.9 0.0 1.7e-117 392.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III LMWPc PF01451.21 gi|662859489|ref|YP_006349545.2| - 0.18 12.2 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 0 Low molecular weight phosphotyrosine protein phosphatase HpcH_HpaI PF03328.14 gi|389847305|ref|YP_006349544.1| - 1.1e-31 109.7 0.5 1.1e-31 109.7 0.5 1.5 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|389847305|ref|YP_006349544.1| - 6.4e-11 42.0 0.1 0.0003 20.1 0.0 2.4 2 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold BPD_transp_1 PF00528.22 gi|389847304|ref|YP_006349543.1| - 7e-32 110.7 10.8 7e-32 110.7 10.8 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389847302|ref|YP_006349541.1| - 8.1e-20 71.3 12.8 8.1e-20 71.3 12.8 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389847302|ref|YP_006349541.1| - 1.5e-07 31.3 0.1 1.5e-07 31.3 0.1 2.6 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF21 PF01595.20 gi|389847302|ref|YP_006349541.1| - 0.044 13.5 1.1 0.094 12.4 1.1 1.6 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain ABC_tran PF00005.27 gi|389847301|ref|YP_006349540.1| - 6.6e-62 208.0 0.0 8.3e-33 113.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|389847301|ref|YP_006349540.1| - 9e-36 122.2 0.3 4.9e-17 62.2 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389847301|ref|YP_006349540.1| - 3.7e-10 40.1 5.4 0.018 14.8 0.1 4.1 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389847301|ref|YP_006349540.1| - 6.2e-09 36.2 0.8 0.00085 19.6 0.2 3.5 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|389847301|ref|YP_006349540.1| - 3.8e-08 33.0 0.4 0.0016 18.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389847301|ref|YP_006349540.1| - 1.1e-06 29.2 0.0 0.043 14.2 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|389847301|ref|YP_006349540.1| - 5.1e-05 22.8 2.7 0.083 12.3 0.0 3.5 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|389847301|ref|YP_006349540.1| - 6.1e-05 23.6 0.0 0.066 13.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|389847301|ref|YP_006349540.1| - 8.5e-05 22.4 0.0 0.18 11.6 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 gi|389847301|ref|YP_006349540.1| - 0.00024 21.0 0.7 0.75 9.7 0.2 2.4 2 0 0 2 2 2 2 RsgA GTPase Mg_chelatase PF01078.21 gi|389847301|ref|YP_006349540.1| - 0.00066 19.1 0.0 0.024 14.0 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|389847301|ref|YP_006349540.1| - 0.00086 19.9 0.0 0.19 12.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|389847301|ref|YP_006349540.1| - 0.0014 17.6 0.9 0.88 8.5 0.1 2.4 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|389847301|ref|YP_006349540.1| - 0.0018 18.6 0.0 2.2 8.7 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_5 PF07728.14 gi|389847301|ref|YP_006349540.1| - 0.0037 17.3 0.0 0.59 10.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|389847301|ref|YP_006349540.1| - 0.0045 17.1 0.1 0.6 10.2 0.0 2.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase NACHT PF05729.12 gi|389847301|ref|YP_006349540.1| - 0.0089 16.0 0.2 3.4 7.6 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|389847301|ref|YP_006349540.1| - 0.01 16.0 0.1 1.9 8.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|389847301|ref|YP_006349540.1| - 0.013 14.7 0.0 1.2 8.3 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit Zeta_toxin PF06414.12 gi|389847301|ref|YP_006349540.1| - 0.014 14.7 0.9 1.9 7.8 0.1 2.4 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.17 gi|389847301|ref|YP_006349540.1| - 0.017 14.9 0.0 4.1 7.1 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase PF06745.13 gi|389847301|ref|YP_006349540.1| - 0.022 14.1 0.3 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA PF00004.29 gi|389847301|ref|YP_006349540.1| - 0.038 14.4 1.0 13 6.2 0.0 3.2 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|389847301|ref|YP_006349540.1| - 0.043 13.5 0.2 6.3 6.5 0.1 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 gi|389847301|ref|YP_006349540.1| - 0.061 12.7 0.2 3.7 6.9 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein NB-ARC PF00931.22 gi|389847301|ref|YP_006349540.1| - 0.065 12.4 1.4 1.9 7.6 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|389847301|ref|YP_006349540.1| - 0.068 12.9 0.3 5 6.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|389847301|ref|YP_006349540.1| - 0.082 12.8 0.4 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase MobB PF03205.14 gi|389847301|ref|YP_006349540.1| - 0.097 12.6 0.1 12 5.8 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 gi|389847301|ref|YP_006349540.1| - 0.1 12.7 0.1 19 5.3 0.0 2.5 3 0 0 3 3 2 0 Helicase HerA, central domain Rad17 PF03215.15 gi|389847301|ref|YP_006349540.1| - 0.11 12.4 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_15 PF13175.6 gi|389847301|ref|YP_006349540.1| - 0.13 12.0 0.0 9.6 5.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|389847301|ref|YP_006349540.1| - 0.24 10.4 1.5 6.8 5.7 0.1 2.6 2 1 1 3 3 3 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|389847301|ref|YP_006349540.1| - 0.27 11.1 0.9 7.7 6.4 0.0 2.6 2 0 0 2 2 2 0 NTPase DUF21 PF01595.20 gi|389847300|ref|YP_006349539.1| - 2.6e-49 167.3 3.1 3.6e-49 166.8 3.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|389847300|ref|YP_006349539.1| - 2.8e-19 68.9 1.3 6.4e-19 67.8 1.3 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|389847300|ref|YP_006349539.1| - 5.3e-12 46.0 2.3 1.9e-05 25.0 0.5 2.8 2 0 0 2 2 2 2 CBS domain PHB_acc_N PF07879.11 gi|389847300|ref|YP_006349539.1| - 0.028 14.5 2.9 0.099 12.7 0.1 2.9 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain FokI_N PF02981.15 gi|389847300|ref|YP_006349539.1| - 0.087 13.0 0.0 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 Restriction endonuclease FokI, recognition domain Usp PF00582.26 gi|389847299|ref|YP_006349538.1| - 3.8e-20 72.8 0.2 4.7e-20 72.5 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2207 PF09972.9 gi|389847298|ref|YP_006349537.1| - 0.018 13.8 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3646 PF12362.8 gi|389847298|ref|YP_006349537.1| - 0.071 13.4 0.4 0.22 11.9 0.2 1.8 1 1 1 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal CPBP PF02517.16 gi|389847297|ref|YP_006349536.1| - 1.9e-11 44.1 11.6 3.9e-11 43.2 11.6 1.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease TMEM70 PF06979.12 gi|389847297|ref|YP_006349536.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 Assembly, mitochondrial proton-transport ATP synth complex B12D PF06522.11 gi|389847297|ref|YP_006349536.1| - 2.3 8.1 3.6 2 8.3 0.3 2.5 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Gate PF07670.14 gi|389847296|ref|YP_006349535.1| - 5.2e-06 26.7 2.0 5.2e-06 26.7 2.0 3.9 5 1 0 5 5 5 2 Nucleoside recognition Peripla_BP_2 PF01497.18 gi|389847295|ref|YP_006349534.1| - 3e-13 49.9 0.0 4.1e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389847295|ref|YP_006349534.1| - 5.3e-05 22.9 0.3 0.0001 22.0 0.3 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NepR PF18557.1 gi|389847295|ref|YP_006349534.1| - 0.13 11.9 0.2 0.29 10.8 0.2 1.5 1 0 0 1 1 1 0 Anti-sigma factor NepR Gly_transf_sug PF04488.15 gi|389847295|ref|YP_006349534.1| - 0.15 12.7 0.0 0.34 11.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase sugar-binding region containing DXD motif DUF3558 PF12079.8 gi|389847295|ref|YP_006349534.1| - 1.9 8.5 6.4 2.9 7.9 6.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DHR-2 PF06920.13 gi|389847294|ref|YP_006349533.1| - 0.11 11.1 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Dock homology region 2 LPG_synthase_TM PF03706.13 gi|389847293|ref|YP_006349532.1| - 2.3e-19 70.0 44.5 3.1e-19 69.6 44.5 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Fer2 PF00111.27 gi|389847292|ref|YP_006349531.1| - 3.6e-12 46.1 0.3 3.6e-12 46.1 0.3 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.31 gi|389847292|ref|YP_006349531.1| - 1.5e-08 34.7 0.0 2.7e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|389847292|ref|YP_006349531.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein FKBP_C PF00254.28 gi|662859488|ref|YP_006349529.2| - 2.2e-25 88.8 0.0 3.5e-25 88.1 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2187 PF09953.9 gi|662859488|ref|YP_006349529.2| - 0.008 16.2 0.2 0.07 13.1 0.2 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2187) DUF150_C PF17384.2 gi|662859488|ref|YP_006349529.2| - 0.064 13.4 0.2 0.16 12.2 0.2 1.6 2 0 0 2 2 2 0 RimP C-terminal SH3 domain YajC PF02699.15 gi|662859488|ref|YP_006349529.2| - 0.13 12.2 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit ABC_tran PF00005.27 gi|389847289|ref|YP_006349528.1| - 3.4e-30 105.3 0.0 5.5e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847289|ref|YP_006349528.1| - 4.1e-12 46.5 1.0 3.2e-05 23.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389847289|ref|YP_006349528.1| - 4.5e-10 39.3 0.1 1.7e-07 30.9 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389847289|ref|YP_006349528.1| - 3.7e-06 27.4 0.2 8.3e-06 26.3 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|389847289|ref|YP_006349528.1| - 7.8e-06 26.2 0.4 7.1e-05 23.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|389847289|ref|YP_006349528.1| - 1.4e-05 24.1 0.0 0.029 13.2 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|389847289|ref|YP_006349528.1| - 1.8e-05 24.4 0.0 4.3e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|389847289|ref|YP_006349528.1| - 4.5e-05 23.3 0.0 0.00033 20.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain HD PF01966.22 gi|389847289|ref|YP_006349528.1| - 0.00014 22.0 0.0 0.00039 20.6 0.0 1.6 1 0 0 1 1 1 1 HD domain AAA_23 PF13476.6 gi|389847289|ref|YP_006349528.1| - 0.00026 21.6 0.0 0.00053 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389847289|ref|YP_006349528.1| - 0.00029 21.0 0.1 0.00064 19.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|389847289|ref|YP_006349528.1| - 0.00073 19.6 0.0 0.0041 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|389847289|ref|YP_006349528.1| - 0.00097 18.9 0.1 0.0026 17.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389847289|ref|YP_006349528.1| - 0.0029 17.5 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|389847289|ref|YP_006349528.1| - 0.0032 17.3 0.1 0.51 10.1 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|389847289|ref|YP_006349528.1| - 0.0037 16.9 2.2 0.011 15.3 0.2 2.5 1 1 2 3 3 3 1 AAA domain NACHT PF05729.12 gi|389847289|ref|YP_006349528.1| - 0.0043 17.0 0.1 0.014 15.4 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Mg_chelatase PF01078.21 gi|389847289|ref|YP_006349528.1| - 0.0054 16.1 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|389847289|ref|YP_006349528.1| - 0.0069 16.8 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|389847289|ref|YP_006349528.1| - 0.0069 16.8 0.0 0.023 15.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|389847289|ref|YP_006349528.1| - 0.0091 15.9 0.0 0.017 15.0 0.0 1.5 2 0 0 2 2 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|389847289|ref|YP_006349528.1| - 0.0099 16.4 0.0 0.024 15.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain SRP54 PF00448.22 gi|389847289|ref|YP_006349528.1| - 0.01 15.5 0.0 0.016 14.9 0.0 1.6 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|389847289|ref|YP_006349528.1| - 0.012 15.9 0.1 0.051 13.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|389847289|ref|YP_006349528.1| - 0.015 15.3 0.0 0.26 11.4 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase Rad17 PF03215.15 gi|389847289|ref|YP_006349528.1| - 0.021 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|389847289|ref|YP_006349528.1| - 0.022 14.8 0.0 0.062 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Cytidylate_kin PF02224.18 gi|389847289|ref|YP_006349528.1| - 0.027 14.2 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase cobW PF02492.19 gi|389847289|ref|YP_006349528.1| - 0.032 13.8 0.0 0.085 12.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MukB PF04310.12 gi|389847289|ref|YP_006349528.1| - 0.039 13.8 0.0 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal APS_kinase PF01583.20 gi|389847289|ref|YP_006349528.1| - 0.052 13.5 0.1 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|389847289|ref|YP_006349528.1| - 0.057 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TniB PF05621.11 gi|389847289|ref|YP_006349528.1| - 0.095 12.1 0.0 8.4 5.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_7 PF12775.7 gi|389847289|ref|YP_006349528.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|389847289|ref|YP_006349528.1| - 0.12 12.3 0.0 0.64 9.9 0.0 2.0 2 1 0 2 2 2 0 NTPase AAA_PrkA PF08298.11 gi|389847289|ref|YP_006349528.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_24 PF13479.6 gi|389847289|ref|YP_006349528.1| - 0.2 11.4 0.0 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|662859487|ref|YP_006349527.2| - 2.2e-91 306.1 34.6 2.8e-91 305.8 34.6 1.1 1 0 0 1 1 1 1 FecCD transport family Pyr_redox_2 PF07992.14 gi|662859486|ref|YP_006349526.2| - 4.9e-10 39.1 0.5 6.4e-08 32.2 1.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|662859486|ref|YP_006349526.2| - 1.2e-06 28.7 0.2 3.4e-06 27.2 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|662859486|ref|YP_006349526.2| - 1.2e-06 28.2 3.3 6.8e-06 25.7 0.9 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|662859486|ref|YP_006349526.2| - 7.9e-06 25.3 0.2 2e-05 24.0 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|662859486|ref|YP_006349526.2| - 8.9e-06 25.0 0.1 0.033 13.3 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|662859486|ref|YP_006349526.2| - 2.1e-05 23.8 0.5 9.6e-05 21.6 0.3 1.9 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|662859486|ref|YP_006349526.2| - 7.1e-05 22.1 0.8 7.1e-05 22.1 0.8 1.9 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|662859486|ref|YP_006349526.2| - 7.8e-05 21.6 0.1 0.00041 19.2 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|662859486|ref|YP_006349526.2| - 0.00012 21.4 0.0 0.017 14.4 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|662859486|ref|YP_006349526.2| - 0.0013 18.4 9.6 0.02 14.5 9.3 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|662859486|ref|YP_006349526.2| - 0.0013 18.0 0.1 0.0025 17.1 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|662859486|ref|YP_006349526.2| - 0.0016 19.0 0.1 0.0038 17.7 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|662859486|ref|YP_006349526.2| - 0.0046 17.0 0.8 3.2 7.7 0.2 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|662859486|ref|YP_006349526.2| - 0.039 13.2 0.1 0.062 12.6 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|662859486|ref|YP_006349526.2| - 0.054 12.3 3.8 1.3 7.8 0.6 2.1 1 1 1 2 2 2 0 Tryptophan halogenase Acetyltransf_3 PF13302.7 gi|389847286|ref|YP_006349525.1| - 1.2e-13 51.9 0.0 1.5e-13 51.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389847286|ref|YP_006349525.1| - 1.4e-13 51.1 0.1 1.9e-13 50.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389847286|ref|YP_006349525.1| - 1.3e-08 35.1 0.0 2.2e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389847286|ref|YP_006349525.1| - 2.9e-08 33.7 0.0 3.7e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389847286|ref|YP_006349525.1| - 2.8e-07 30.4 0.0 6e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|389847286|ref|YP_006349525.1| - 3.9e-05 23.8 0.0 5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389847286|ref|YP_006349525.1| - 6.5e-05 23.0 0.0 0.054 13.6 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389847286|ref|YP_006349525.1| - 0.021 14.9 0.1 0.054 13.6 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|389847286|ref|YP_006349525.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain SRCR PF00530.18 gi|389847285|ref|YP_006349524.1| - 0.017 15.6 1.3 1 9.9 0.1 2.2 2 0 0 2 2 2 0 Scavenger receptor cysteine-rich domain RIG-I_C-RD PF11648.8 gi|389847285|ref|YP_006349524.1| - 0.037 14.3 0.0 0.08 13.2 0.0 1.7 1 1 0 1 1 1 0 C-terminal domain of RIG-I Hydrolase_4 PF12146.8 gi|389847284|ref|YP_006349523.1| - 8.3e-15 54.7 0.0 4.6e-09 35.9 0.0 2.3 2 1 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|389847284|ref|YP_006349523.1| - 1.1e-12 48.2 0.0 2.6e-11 43.7 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389847284|ref|YP_006349523.1| - 2.4e-12 47.9 3.9 3e-12 47.6 3.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|389847284|ref|YP_006349523.1| - 3.9e-05 23.4 0.0 7.1e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.13 gi|389847284|ref|YP_006349523.1| - 0.038 13.6 0.0 0.32 10.6 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) AMP-binding PF00501.28 gi|389847283|ref|YP_006349522.1| - 3.9e-99 332.1 0.3 4.7e-99 331.8 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389847283|ref|YP_006349522.1| - 4.4e-18 66.0 0.6 1.6e-17 64.2 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ABC_tran PF00005.27 gi|389847282|ref|YP_006349521.1| - 1.9e-27 96.4 0.0 2.6e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389847282|ref|YP_006349521.1| - 1e-08 35.4 0.2 0.00037 20.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389847282|ref|YP_006349521.1| - 0.0034 16.9 0.0 1.3 8.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|389847282|ref|YP_006349521.1| - 0.076 13.5 0.1 0.12 12.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain Peripla_BP_2 PF01497.18 gi|389847282|ref|YP_006349521.1| - 0.14 11.7 0.1 0.22 11.1 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein AAA_29 PF13555.6 gi|389847282|ref|YP_006349521.1| - 0.22 11.3 0.4 0.44 10.3 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|389847281|ref|YP_006349520.1| - 3.7e-27 95.5 0.0 5.3e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|389847281|ref|YP_006349520.1| - 8.2e-07 29.7 0.0 1.2e-06 29.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|389847281|ref|YP_006349520.1| - 1.1e-05 25.5 0.0 0.0013 18.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|389847281|ref|YP_006349520.1| - 2.6e-05 24.7 0.0 3.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|389847281|ref|YP_006349520.1| - 4.3e-05 22.9 0.0 8.5e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|389847281|ref|YP_006349520.1| - 0.00019 21.2 0.0 0.00033 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389847281|ref|YP_006349520.1| - 0.00039 20.4 0.0 0.00078 19.4 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|389847281|ref|YP_006349520.1| - 0.00079 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|389847281|ref|YP_006349520.1| - 0.001 19.2 0.5 0.0088 16.1 0.0 2.3 1 1 0 2 2 2 1 50S ribosome-binding GTPase SMC_N PF02463.19 gi|389847281|ref|YP_006349520.1| - 0.0011 18.4 0.2 0.0029 17.1 0.2 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|389847281|ref|YP_006349520.1| - 0.0024 17.5 0.0 0.0056 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|389847281|ref|YP_006349520.1| - 0.0024 18.0 0.0 0.0042 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389847281|ref|YP_006349520.1| - 0.0036 17.6 0.0 0.0052 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|389847281|ref|YP_006349520.1| - 0.0047 17.2 0.0 0.018 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|389847281|ref|YP_006349520.1| - 0.0068 16.0 0.1 0.033 13.8 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|389847281|ref|YP_006349520.1| - 0.0069 16.9 0.0 0.018 15.6 0.0 1.7 1 1 1 2 2 2 1 AAA domain T2SSE PF00437.20 gi|389847281|ref|YP_006349520.1| - 0.0081 15.2 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|389847281|ref|YP_006349520.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|389847281|ref|YP_006349520.1| - 0.022 14.8 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|389847281|ref|YP_006349520.1| - 0.025 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_ATPase PF09818.9 gi|389847281|ref|YP_006349520.1| - 0.026 13.3 0.2 2.4 6.9 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.6 gi|389847281|ref|YP_006349520.1| - 0.028 14.4 0.0 0.085 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|389847281|ref|YP_006349520.1| - 0.055 13.9 0.0 0.15 12.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|389847281|ref|YP_006349520.1| - 0.061 13.2 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|389847281|ref|YP_006349520.1| - 0.068 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|389847281|ref|YP_006349520.1| - 0.07 12.8 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 gi|389847281|ref|YP_006349520.1| - 0.073 13.0 0.2 0.19 11.6 0.0 1.8 2 0 0 2 2 1 0 NTPase SRPRB PF09439.10 gi|389847281|ref|YP_006349520.1| - 0.078 12.4 0.1 0.17 11.3 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ploopntkinase3 PF18751.1 gi|389847281|ref|YP_006349520.1| - 0.085 12.8 0.0 0.3 11.0 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 Thymidylate_kin PF02223.17 gi|389847281|ref|YP_006349520.1| - 0.086 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_7 PF12775.7 gi|389847281|ref|YP_006349520.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MobB PF03205.14 gi|389847281|ref|YP_006349520.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|389847281|ref|YP_006349520.1| - 0.12 11.0 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|389847281|ref|YP_006349520.1| - 0.16 11.1 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase BPD_transp_2 PF02653.16 gi|389847279|ref|YP_006349518.1| - 4.8e-38 130.9 29.6 8.5e-38 130.0 29.6 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|389847278|ref|YP_006349517.1| - 1.8e-32 112.6 36.2 2.3e-32 112.2 36.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|389847277|ref|YP_006349516.1| - 5e-37 128.3 10.8 6.4e-37 128.0 10.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|389847277|ref|YP_006349516.1| - 5.1e-12 45.4 0.5 2.8e-11 43.0 0.5 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain HTH_10 PF04967.12 gi|389847276|ref|YP_006349515.1| - 2.6e-15 56.0 0.0 4.6e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|389847276|ref|YP_006349515.1| - 0.0028 17.5 0.6 0.0095 15.8 0.0 2.2 3 0 0 3 3 3 1 MarR family HTH_11 PF08279.12 gi|389847276|ref|YP_006349515.1| - 0.073 13.0 0.0 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.7 gi|389847276|ref|YP_006349515.1| - 0.075 13.1 0.0 0.31 11.1 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Cupin_8 PF13621.6 gi|389847276|ref|YP_006349515.1| - 0.079 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Cupin-like domain SpoIIID PF12116.8 gi|389847276|ref|YP_006349515.1| - 0.096 12.8 0.0 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Stage III sporulation protein D Sigma70_r4 PF04545.16 gi|389847276|ref|YP_006349515.1| - 0.1 12.2 0.1 0.25 10.9 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|389847276|ref|YP_006349515.1| - 0.1 12.9 0.0 0.29 11.4 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HMA PF00403.26 gi|389847275|ref|YP_006349514.1| - 9.7e-19 67.6 1.0 1.1e-18 67.5 1.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Thioredoxin_3 PF13192.6 gi|389847275|ref|YP_006349514.1| - 0.071 13.2 0.4 0.092 12.8 0.4 1.4 1 1 0 1 1 1 0 Thioredoxin domain VbhA PF18495.1 gi|389847275|ref|YP_006349514.1| - 0.16 11.9 6.7 0.22 11.4 6.7 1.2 1 0 0 1 1 1 0 Antitoxin VbhA HTH_24 PF13412.6 gi|389847274|ref|YP_006349513.1| - 6.1e-15 54.5 0.1 1.1e-14 53.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|389847274|ref|YP_006349513.1| - 6.4e-15 54.7 3.6 6.4e-15 54.7 3.6 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|389847274|ref|YP_006349513.1| - 7.7e-08 32.1 0.1 1.9e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389847274|ref|YP_006349513.1| - 5.7e-06 26.1 0.2 1.1e-05 25.3 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|389847274|ref|YP_006349513.1| - 1.6e-05 24.9 1.0 2.7e-05 24.1 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|389847274|ref|YP_006349513.1| - 0.00019 21.3 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|389847274|ref|YP_006349513.1| - 0.0003 20.5 0.1 0.00083 19.1 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain YHS PF04945.13 gi|389847274|ref|YP_006349513.1| - 0.00043 20.3 0.4 0.00071 19.6 0.4 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|389847274|ref|YP_006349513.1| - 0.0021 18.4 2.0 0.0033 17.7 2.0 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_Tnp_ISL3 PF13542.6 gi|389847274|ref|YP_006349513.1| - 0.0062 15.9 0.1 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|389847274|ref|YP_006349513.1| - 0.011 15.8 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LIM PF00412.22 gi|389847274|ref|YP_006349513.1| - 0.017 15.3 0.6 0.028 14.6 0.6 1.3 1 0 0 1 1 1 0 LIM domain HTH_23 PF13384.6 gi|389847274|ref|YP_006349513.1| - 0.022 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|389847274|ref|YP_006349513.1| - 0.042 13.7 0.0 0.074 12.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|389847274|ref|YP_006349513.1| - 0.072 13.6 0.1 0.21 12.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|389847274|ref|YP_006349513.1| - 0.1 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family zf-FCS PF06467.14 gi|389847274|ref|YP_006349513.1| - 0.1 12.6 2.3 0.16 11.9 2.3 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif E1-E2_ATPase PF00122.20 gi|662859485|ref|YP_006349512.2| - 6.9e-48 162.6 1.7 2.4e-47 160.8 1.7 2.0 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|662859485|ref|YP_006349512.2| - 5.4e-47 160.8 7.2 5.4e-47 160.8 7.2 2.1 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|662859485|ref|YP_006349512.2| - 1.5e-32 111.9 0.6 2.6e-16 59.8 0.0 3.4 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|662859485|ref|YP_006349512.2| - 2.2e-06 27.6 2.3 0.00043 20.1 1.0 2.7 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|662859485|ref|YP_006349512.2| - 3.4e-05 24.3 0.1 0.00014 22.3 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|662859485|ref|YP_006349512.2| - 0.0008 19.5 1.0 0.012 15.7 0.0 3.4 4 1 0 4 4 4 1 Haloacid dehalogenase-like hydrolase Fer2_BFD PF04324.15 gi|662859485|ref|YP_006349512.2| - 0.53 10.7 1.7 5.4 7.4 0.1 3.2 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain Big_9 PF17963.1 gi|389847272|ref|YP_006349511.1| - 6.3 7.6 16.2 17 6.2 1.4 3.2 1 1 1 2 2 2 0 Bacterial Ig domain TPR_12 PF13424.6 gi|389847271|ref|YP_006349510.1| - 1.4e-34 118.2 30.5 6.6e-13 48.8 1.2 6.5 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|389847271|ref|YP_006349510.1| - 1.9e-18 67.0 20.8 2e-14 53.7 12.5 3.1 1 1 2 3 3 3 2 MalT-like TPR region TPR_2 PF07719.17 gi|389847271|ref|YP_006349510.1| - 2.4e-17 61.6 11.9 0.0099 15.9 0.0 10.4 10 0 0 10 10 10 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|389847271|ref|YP_006349510.1| - 1.9e-14 53.0 30.3 0.00011 21.9 0.4 7.9 8 0 0 8 8 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|389847271|ref|YP_006349510.1| - 1.1e-13 50.2 0.8 0.12 12.7 0.0 7.7 8 0 0 8 8 7 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|389847271|ref|YP_006349510.1| - 6.4e-09 35.9 43.9 3.5 8.7 0.3 11.9 9 3 4 13 13 11 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|389847271|ref|YP_006349510.1| - 2.1e-08 33.7 3.5 0.023 14.5 0.0 7.1 8 0 0 8 8 7 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|389847271|ref|YP_006349510.1| - 6.2e-07 29.8 26.4 0.086 13.4 0.1 7.4 3 1 5 8 8 8 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|389847271|ref|YP_006349510.1| - 1.6e-06 28.7 29.3 0.0072 16.9 4.4 6.6 5 1 2 7 7 5 4 Tetratricopeptide repeat TPR_21 PF09976.9 gi|389847271|ref|YP_006349510.1| - 1.7e-05 24.6 15.2 0.00094 18.9 0.2 4.3 1 1 4 5 5 5 1 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|389847271|ref|YP_006349510.1| - 8.8e-05 22.8 32.9 0.6 10.9 0.0 8.4 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|389847271|ref|YP_006349510.1| - 0.00043 20.1 21.8 3.4 7.9 0.0 8.0 7 1 0 7 7 7 1 Tetratricopeptide repeat AAA_25 PF13481.6 gi|389847271|ref|YP_006349510.1| - 0.00049 19.7 1.3 0.0044 16.6 0.1 3.0 2 1 0 2 2 2 1 AAA domain GntR PF00392.21 gi|389847271|ref|YP_006349510.1| - 0.0067 16.0 0.0 0.043 13.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family ABC_tran PF00005.27 gi|389847271|ref|YP_006349510.1| - 0.0085 16.6 0.0 0.032 14.8 0.0 2.0 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|389847271|ref|YP_006349510.1| - 0.017 15.5 0.1 0.017 15.5 0.1 3.7 2 2 1 3 3 2 0 AAA ATPase domain MarR_2 PF12802.7 gi|389847271|ref|YP_006349510.1| - 0.021 14.7 0.0 0.31 11.0 0.0 2.8 2 0 0 2 2 2 0 MarR family TPR_17 PF13431.6 gi|389847271|ref|YP_006349510.1| - 0.026 14.9 0.9 1.2e+02 3.4 0.0 5.7 5 1 1 6 6 6 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|389847271|ref|YP_006349510.1| - 0.027 14.7 0.5 1.1 9.5 0.1 3.2 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TrmB PF01978.19 gi|389847271|ref|YP_006349510.1| - 0.028 14.3 0.0 0.094 12.6 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TPR_11 PF13414.6 gi|389847271|ref|YP_006349510.1| - 0.033 13.9 0.3 47 3.8 0.0 4.6 4 0 0 4 4 4 0 TPR repeat AAA_22 PF13401.6 gi|389847271|ref|YP_006349510.1| - 0.053 13.8 1.2 1.3 9.3 0.1 3.5 2 1 1 3 3 3 0 AAA domain YqcI_YcgG PF08892.11 gi|389847271|ref|YP_006349510.1| - 0.079 12.8 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 YqcI/YcgG family AAA_33 PF13671.6 gi|389847271|ref|YP_006349510.1| - 0.081 13.1 1.7 0.66 10.1 0.0 3.4 4 0 0 4 4 3 0 AAA domain AAA PF00004.29 gi|389847271|ref|YP_006349510.1| - 0.092 13.2 0.0 0.29 11.6 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DinB_2 PF12867.7 gi|389847271|ref|YP_006349510.1| - 0.13 12.8 2.1 6.9 7.2 2.1 3.6 1 1 0 1 1 1 0 DinB superfamily AAA_17 PF13207.6 gi|389847271|ref|YP_006349510.1| - 0.23 11.9 1.0 0.94 9.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Wzy_C_2 PF11846.8 gi|389847271|ref|YP_006349510.1| - 0.94 9.4 2.5 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal TPR_6 PF13174.6 gi|389847271|ref|YP_006349510.1| - 1.3 9.8 13.8 58 4.6 0.3 7.5 7 1 0 7 7 5 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|389847271|ref|YP_006349510.1| - 2.7 8.2 10.2 5.7 7.2 0.2 4.0 3 1 1 4 4 4 0 Tetratrico peptide repeat MC1 PF05854.11 gi|389848346|ref|YP_006350585.1| - 1.3e-45 153.6 0.4 1.6e-45 153.3 0.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.10 gi|389848347|ref|YP_006350586.1| - 0.0022 18.0 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|389848347|ref|YP_006350586.1| - 0.011 15.6 0.1 0.017 15.1 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DHO_dh PF01180.21 gi|389848348|ref|YP_006350587.1| - 7.6e-84 281.4 0.0 8.8e-84 281.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|389848348|ref|YP_006350587.1| - 0.00046 19.7 0.1 0.0012 18.3 0.0 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|389848348|ref|YP_006350587.1| - 0.032 13.7 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein NQRA_SLBB PF11973.8 gi|389848348|ref|YP_006350587.1| - 0.067 13.8 0.3 9.9 6.9 0.1 2.4 2 0 0 2 2 2 0 NQRA C-terminal domain tRNA-synt_1 PF00133.22 gi|389848350|ref|YP_006350589.1| - 4.6e-130 434.7 0.2 1.1e-128 430.2 0.2 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|389848350|ref|YP_006350589.1| - 1.7e-31 109.3 0.2 4e-31 108.0 0.0 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|389848350|ref|YP_006350589.1| - 4.3e-21 75.1 0.3 3.2e-10 39.3 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|389848350|ref|YP_006350589.1| - 2.9e-06 26.9 0.0 6.6e-05 22.5 0.0 2.5 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|389848350|ref|YP_006350589.1| - 4.8e-06 26.1 0.0 0.0021 17.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|389848350|ref|YP_006350589.1| - 0.00056 18.9 0.0 0.0074 15.3 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|389848350|ref|YP_006350589.1| - 0.0088 16.1 2.6 0.25 11.5 0.5 2.7 2 0 0 2 2 2 1 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|389848350|ref|YP_006350589.1| - 0.033 14.0 0.2 0.033 14.0 0.2 1.9 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.7 gi|389848350|ref|YP_006350589.1| - 0.16 12.0 0.5 12 6.0 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon Cys_Met_Meta_PP PF01053.20 gi|389848351|ref|YP_006350590.1| - 1.2e-142 475.0 0.0 1.3e-142 474.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389848351|ref|YP_006350590.1| - 1.1e-10 41.4 2.8 8e-10 38.6 0.8 2.5 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|389848351|ref|YP_006350590.1| - 4.8e-06 26.0 0.0 6.1e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Met_gamma_lyase PF06838.11 gi|389848351|ref|YP_006350590.1| - 6.4e-06 24.9 0.0 3.4e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 Methionine gamma-lyase Aminotran_5 PF00266.19 gi|389848351|ref|YP_006350590.1| - 1.6e-05 24.0 0.0 2.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|389848351|ref|YP_006350590.1| - 0.00066 19.1 0.3 0.0018 17.7 0.3 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase tRNA_synthFbeta PF17759.1 gi|389848352|ref|YP_006350591.1| - 1.3e-41 142.4 0.0 1.8e-41 141.9 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|389848352|ref|YP_006350591.1| - 4e-16 59.0 0.3 1e-14 54.6 0.3 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|389848352|ref|YP_006350591.1| - 8.9e-12 45.0 0.0 1.4e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|389848352|ref|YP_006350591.1| - 6.2e-09 36.0 0.3 4.3e-05 23.7 0.0 3.5 3 1 0 3 3 3 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|389848352|ref|YP_006350591.1| - 0.0026 17.3 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.20 gi|662859598|ref|YP_006350592.2| - 5.6e-79 265.1 0.0 7e-79 264.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|662859598|ref|YP_006350592.2| - 0.0002 20.6 0.4 0.023 13.8 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|662859598|ref|YP_006350592.2| - 0.00093 19.0 1.5 0.0031 17.4 0.2 2.5 2 1 1 3 3 3 1 MarR family MarR PF01047.22 gi|662859598|ref|YP_006350592.2| - 0.0083 16.0 0.0 0.3 11.1 0.0 2.4 2 0 0 2 2 2 1 MarR family tRNA_synthFbeta PF17759.1 gi|662859598|ref|YP_006350592.2| - 0.013 15.0 0.0 0.46 9.9 0.0 2.2 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_24 PF13412.6 gi|662859598|ref|YP_006350592.2| - 0.017 14.6 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|662859598|ref|YP_006350592.2| - 0.045 13.7 0.1 0.27 11.2 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|662859598|ref|YP_006350592.2| - 0.063 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit DAO PF01266.24 gi|389848355|ref|YP_006350594.1| - 1.1e-74 252.2 9.9 1.2e-74 252.0 9.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389848355|ref|YP_006350594.1| - 7e-09 35.3 12.3 2.5e-08 33.4 12.3 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|389848355|ref|YP_006350594.1| - 2e-07 30.6 3.6 0.00027 20.3 1.5 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389848355|ref|YP_006350594.1| - 6.9e-07 29.4 1.9 6.9e-07 29.4 1.9 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|389848355|ref|YP_006350594.1| - 1.1e-06 29.0 1.4 1.3e-05 25.6 1.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|389848355|ref|YP_006350594.1| - 1.1e-05 24.9 3.1 0.023 14.0 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|389848355|ref|YP_006350594.1| - 5.1e-05 22.8 6.1 0.00014 21.4 6.1 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389848355|ref|YP_006350594.1| - 8.1e-05 21.5 0.8 0.0036 16.1 0.6 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|389848355|ref|YP_006350594.1| - 0.0041 17.5 0.8 0.008 16.6 0.8 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|389848355|ref|YP_006350594.1| - 0.006 15.9 8.1 0.042 13.1 4.5 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|389848355|ref|YP_006350594.1| - 0.0079 15.5 0.5 0.0079 15.5 0.5 1.5 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|389848355|ref|YP_006350594.1| - 0.008 15.5 1.9 0.046 13.0 3.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389848355|ref|YP_006350594.1| - 0.012 14.9 1.9 0.022 14.1 1.9 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CoA_transf_3 PF02515.17 gi|389848355|ref|YP_006350594.1| - 0.045 12.9 1.1 0.93 8.5 0.4 2.1 2 0 0 2 2 2 0 CoA-transferase family III UDPG_MGDP_dh_N PF03721.14 gi|389848355|ref|YP_006350594.1| - 0.11 12.0 1.6 0.19 11.3 1.6 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|389848355|ref|YP_006350594.1| - 0.19 11.4 1.5 0.36 10.5 1.5 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|389848355|ref|YP_006350594.1| - 0.2 11.6 1.9 0.35 10.7 1.9 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|389848355|ref|YP_006350594.1| - 0.24 10.2 1.9 0.37 9.6 1.9 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|389848355|ref|YP_006350594.1| - 0.67 9.9 6.1 2.3 8.2 0.8 2.7 2 1 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|389848355|ref|YP_006350594.1| - 7.9 5.4 8.3 2.2 7.3 5.0 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|389848355|ref|YP_006350594.1| - 8.5 5.3 6.2 2.6 7.0 2.5 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein OCD_Mu_crystall PF02423.15 gi|389848356|ref|YP_006350595.1| - 1.4e-58 198.3 2.8 1.6e-57 194.9 2.8 1.9 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|389848356|ref|YP_006350595.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|389848356|ref|YP_006350595.1| - 0.084 13.5 0.1 0.18 12.4 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent tRNA-synt_1b PF00579.25 gi|389848357|ref|YP_006350596.1| - 4.1e-40 137.9 0.0 1.1e-22 80.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.17 gi|389848358|ref|YP_006350597.1| - 2.2e-31 107.7 1.6 2.6e-24 85.1 0.0 3.9 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|389848358|ref|YP_006350597.1| - 4e-28 96.9 0.0 9.2e-13 47.7 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain NucS PF01939.16 gi|389848359|ref|YP_006350598.1| - 1.2e-07 31.3 0.0 1.9e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Endonuclease NucS Auto_anti-p27 PF06677.12 gi|389848359|ref|YP_006350598.1| - 2.5e-07 30.7 10.6 2.2e-06 27.7 0.5 3.7 3 0 0 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|389848359|ref|YP_006350598.1| - 5.9e-07 29.2 1.2 3.3e-05 23.6 0.1 2.5 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.12 gi|389848359|ref|YP_006350598.1| - 0.26 11.3 2.2 0.28 11.2 0.5 1.9 1 1 0 1 1 1 0 zinc-ribbons Zn_ribbon_recom PF13408.6 gi|389848359|ref|YP_006350598.1| - 0.38 11.3 2.4 1.9 9.1 0.3 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-TFIIB PF13453.6 gi|389848359|ref|YP_006350598.1| - 0.44 9.9 6.3 0.24 10.8 2.0 2.8 2 1 0 2 2 2 0 Transcription factor zinc-finger HAD_2 PF13419.6 gi|389848360|ref|YP_006350599.1| - 6.8e-27 94.7 0.0 7.9e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389848360|ref|YP_006350599.1| - 1.6e-16 61.2 0.4 5.7e-16 59.4 0.4 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389848360|ref|YP_006350599.1| - 2.4e-08 34.6 0.5 2.9e-08 34.3 0.5 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389848360|ref|YP_006350599.1| - 6.8e-08 32.5 0.0 1.6e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|389848360|ref|YP_006350599.1| - 0.046 13.8 0.2 0.52 10.4 0.2 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF1917 PF08939.10 gi|389848361|ref|YP_006350600.1| - 1.2e-11 45.1 0.0 1.5e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) DEAD PF00270.29 gi|662859599|ref|YP_006350601.2| - 7.2e-26 91.0 0.0 9e-25 87.4 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|662859599|ref|YP_006350601.2| - 5.3e-19 68.4 0.0 7e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|662859599|ref|YP_006350601.2| - 2.5e-11 43.9 0.0 3.9e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|662859599|ref|YP_006350601.2| - 7.8e-08 32.8 2.8 1.9e-07 31.5 0.5 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|662859599|ref|YP_006350601.2| - 7.8e-08 32.6 0.0 3.7e-07 30.5 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|662859599|ref|YP_006350601.2| - 0.035 13.9 0.2 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Radical_SAM PF04055.21 gi|662859600|ref|YP_006350602.2| - 5.4e-15 56.2 0.0 8.7e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|662859600|ref|YP_006350602.2| - 2.8e-11 43.8 0.1 9.9e-11 42.0 0.1 1.9 2 0 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family E1_dh PF00676.20 gi|389848364|ref|YP_006350603.1| - 1.1e-85 287.2 0.0 1.5e-85 286.8 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|389848364|ref|YP_006350603.1| - 2.3e-05 23.7 0.0 4.1e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|389848364|ref|YP_006350603.1| - 0.00011 21.2 0.0 0.00019 20.5 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 gi|389848364|ref|YP_006350603.1| - 0.0013 18.6 0.0 0.0034 17.2 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.6 gi|389848364|ref|YP_006350603.1| - 0.032 13.9 0.0 0.077 12.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain BPL_C PF02237.17 gi|389848364|ref|YP_006350603.1| - 0.24 11.3 0.9 0.67 9.9 0.9 1.8 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain Transket_pyr PF02779.24 gi|389848365|ref|YP_006350604.1| - 2e-46 157.9 0.0 2.9e-46 157.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|389848365|ref|YP_006350604.1| - 3.7e-40 136.7 0.1 6.1e-40 136.0 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|389848365|ref|YP_006350604.1| - 2.6e-05 24.4 0.1 4.5e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II 2-oxoacid_dh PF00198.23 gi|389848366|ref|YP_006350605.1| - 9.7e-93 309.9 0.0 1.3e-92 309.5 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|389848366|ref|YP_006350605.1| - 4.4e-24 84.1 1.4 9.4e-24 83.1 1.4 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|389848366|ref|YP_006350605.1| - 4.9e-22 78.0 2.3 3.7e-16 59.2 0.3 2.6 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|389848366|ref|YP_006350605.1| - 1.8e-06 27.7 5.4 0.0099 15.7 0.0 3.4 2 1 1 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.19 gi|389848366|ref|YP_006350605.1| - 0.0018 18.1 0.1 0.0066 16.3 0.1 2.0 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.6 gi|389848366|ref|YP_006350605.1| - 0.0057 17.3 0.9 0.084 13.6 0.1 2.8 1 1 1 2 2 2 1 HlyD family secretion protein RnfC_N PF13375.6 gi|389848366|ref|YP_006350605.1| - 0.042 13.8 0.1 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Pyr_redox_2 PF07992.14 gi|389848367|ref|YP_006350606.1| - 7.3e-72 242.1 4.8 7.3e-72 242.1 4.8 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389848367|ref|YP_006350606.1| - 6.4e-38 129.4 1.9 1.7e-37 128.0 1.5 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|389848367|ref|YP_006350606.1| - 1.8e-19 70.1 6.2 5.6e-18 65.3 0.5 3.1 4 0 0 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389848367|ref|YP_006350606.1| - 1.4e-15 57.4 0.9 1e-09 38.1 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389848367|ref|YP_006350606.1| - 1.3e-11 44.2 3.6 1e-07 31.4 2.0 2.9 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|389848367|ref|YP_006350606.1| - 6.7e-10 38.6 5.7 3.8e-07 29.6 0.6 2.9 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|389848367|ref|YP_006350606.1| - 3.1e-08 32.7 5.8 0.00024 19.9 0.2 3.5 3 1 1 4 4 4 3 HI0933-like protein FAD_oxidored PF12831.7 gi|389848367|ref|YP_006350606.1| - 4e-08 33.0 4.9 4.5e-07 29.6 0.8 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|389848367|ref|YP_006350606.1| - 1.2e-07 31.9 1.8 0.00046 20.4 0.5 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|389848367|ref|YP_006350606.1| - 6e-07 29.0 8.1 0.00035 19.9 0.2 3.2 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|389848367|ref|YP_006350606.1| - 3.1e-06 27.0 15.7 0.048 13.2 1.8 4.3 3 1 1 4 4 4 4 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|389848367|ref|YP_006350606.1| - 3.3e-05 24.3 0.2 0.032 14.7 0.0 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|389848367|ref|YP_006350606.1| - 7.7e-05 22.3 1.1 0.0037 16.8 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|389848367|ref|YP_006350606.1| - 0.00023 20.6 6.0 0.061 12.6 0.1 3.3 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|389848367|ref|YP_006350606.1| - 0.0017 18.3 4.6 0.029 14.3 0.1 2.6 3 0 0 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|389848367|ref|YP_006350606.1| - 0.0026 16.9 0.6 0.63 9.0 0.0 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein K_oxygenase PF13434.6 gi|389848367|ref|YP_006350606.1| - 0.0074 15.5 0.0 3.3 6.7 0.0 2.3 1 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|389848367|ref|YP_006350606.1| - 0.013 14.8 4.4 0.076 12.2 0.3 2.7 3 0 0 3 3 3 0 Thi4 family NAD_binding_9 PF13454.6 gi|389848367|ref|YP_006350606.1| - 0.019 15.0 1.6 9.2 6.2 0.0 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|389848367|ref|YP_006350606.1| - 0.02 15.2 0.7 0.28 11.5 0.1 2.6 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.14 gi|389848367|ref|YP_006350606.1| - 0.14 11.0 3.7 0.26 10.1 0.1 2.4 2 1 0 2 2 2 0 Tryptophan halogenase Cytochrome_B PF00033.19 gi|662859601|ref|YP_006350607.2| - 0.072 12.9 1.6 0.076 12.8 1.6 1.0 1 0 0 1 1 1 0 Cytochrome b/b6/petB HAD PF12710.7 gi|389848369|ref|YP_006350608.1| - 2.8e-26 93.1 0.2 3.3e-26 92.9 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389848369|ref|YP_006350608.1| - 1.7e-14 54.6 3.4 1.7e-12 48.1 3.4 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|389848369|ref|YP_006350608.1| - 1.2e-13 51.4 0.1 4.4e-09 36.4 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389848369|ref|YP_006350608.1| - 1.6e-07 31.6 0.1 7.6e-06 26.1 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|389848369|ref|YP_006350608.1| - 0.00022 20.7 0.0 0.057 12.8 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase DUF4392 PF14336.6 gi|389848369|ref|YP_006350608.1| - 0.017 14.6 0.0 1.9 7.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) S6PP PF05116.13 gi|389848369|ref|YP_006350608.1| - 0.022 14.3 0.1 0.052 13.1 0.0 1.7 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|389848369|ref|YP_006350608.1| - 0.035 14.2 0.0 0.24 11.5 0.0 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|389848369|ref|YP_006350608.1| - 0.054 13.0 0.0 0.078 12.5 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Glyco_trans_4_4 PF13579.6 gi|389848369|ref|YP_006350608.1| - 0.096 13.1 0.1 0.22 11.9 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain DUF835 PF05763.12 gi|389848371|ref|YP_006350610.1| - 8.4e-06 25.6 0.0 8.8e-05 22.3 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF835) DUF1918 PF08940.11 gi|389848371|ref|YP_006350610.1| - 0.0056 16.3 0.4 0.014 15.0 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1918) 2-Hacid_dh_C PF02826.19 gi|662859602|ref|YP_006350611.2| - 1.4e-58 197.2 0.0 2.8e-58 196.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|662859602|ref|YP_006350611.2| - 4.2e-36 123.6 1.4 8.4e-36 122.6 0.8 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|662859602|ref|YP_006350611.2| - 5.3e-05 22.9 0.2 0.00035 20.3 0.0 2.5 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.15 gi|662859602|ref|YP_006350611.2| - 0.0064 16.7 0.3 0.098 12.8 0.0 3.0 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|662859602|ref|YP_006350611.2| - 0.01 16.2 0.0 0.033 14.6 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.12 gi|662859602|ref|YP_006350611.2| - 0.028 14.0 0.0 0.076 12.6 0.0 1.8 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|662859602|ref|YP_006350611.2| - 0.028 14.7 0.3 0.14 12.4 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_C PF03720.15 gi|662859602|ref|YP_006350611.2| - 0.037 14.4 0.7 0.23 11.9 0.0 2.6 4 0 0 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ELFV_dehydrog PF00208.21 gi|662859602|ref|YP_006350611.2| - 0.046 13.4 0.6 0.11 12.2 0.1 1.9 2 1 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.17 gi|662859602|ref|YP_006350611.2| - 0.057 14.0 0.8 0.89 10.2 0.0 3.2 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|662859602|ref|YP_006350611.2| - 0.068 13.1 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PALP PF00291.25 gi|389848373|ref|YP_006350612.1| - 2.2e-72 244.0 2.2 2.5e-72 243.8 2.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|389848373|ref|YP_006350612.1| - 0.13 12.4 0.0 3.7 7.8 0.0 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TrmB PF01978.19 gi|662859603|ref|YP_006350613.2| - 7.5e-15 54.6 0.0 9.9e-15 54.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|662859603|ref|YP_006350613.2| - 7.3e-07 29.0 0.1 9.8e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|662859603|ref|YP_006350613.2| - 1.8e-05 24.2 0.1 2.7e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|662859603|ref|YP_006350613.2| - 8.4e-05 22.4 0.0 0.00013 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|662859603|ref|YP_006350613.2| - 0.0016 18.2 0.1 0.0034 17.1 0.1 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|662859603|ref|YP_006350613.2| - 0.0044 17.1 0.3 0.007 16.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|662859603|ref|YP_006350613.2| - 0.0061 16.4 0.0 0.0089 15.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|662859603|ref|YP_006350613.2| - 0.0071 16.3 0.0 0.11 12.5 0.0 2.1 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) MerR-DNA-bind PF09278.11 gi|662859603|ref|YP_006350613.2| - 0.0073 16.8 0.0 4.3 7.9 0.0 2.3 2 1 0 2 2 2 2 MerR, DNA binding HTH_Crp_2 PF13545.6 gi|662859603|ref|YP_006350613.2| - 0.018 15.0 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|662859603|ref|YP_006350613.2| - 0.056 13.1 0.2 0.11 12.2 0.1 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|662859603|ref|YP_006350613.2| - 0.06 13.8 0.0 0.098 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|662859603|ref|YP_006350613.2| - 0.1 12.5 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Tape_meas_lam_C PF09718.10 gi|389848376|ref|YP_006350615.1| - 0.016 15.3 0.2 0.041 14.0 0.2 1.6 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Glyco_hydro_56 PF01630.18 gi|389848376|ref|YP_006350615.1| - 0.032 13.3 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 Hyaluronidase CstA PF02554.14 gi|389848379|ref|YP_006350618.1| - 1.9e-109 366.0 18.6 1.9e-109 366.0 18.6 1.8 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|389848379|ref|YP_006350618.1| - 2.2e-31 108.7 3.6 2.2e-31 108.7 3.6 3.7 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA DUF973 PF06157.11 gi|389848379|ref|YP_006350618.1| - 0.083 11.9 4.8 1.2 8.1 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF973) Pox_P21 PF05313.12 gi|389848379|ref|YP_006350618.1| - 0.51 9.9 7.9 0.2 11.2 2.8 2.6 3 0 0 3 3 3 0 Poxvirus P21 membrane protein DUF3671 PF12420.8 gi|389848379|ref|YP_006350618.1| - 6.8 6.8 6.8 7.7 6.6 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function ArsA_ATPase PF02374.15 gi|389848380|ref|YP_006350619.1| - 2.4e-70 237.1 0.0 2.9e-70 236.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|389848380|ref|YP_006350619.1| - 2.6e-12 47.0 0.0 3.8e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848380|ref|YP_006350619.1| - 9.7e-09 35.4 0.0 2.3e-08 34.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|389848380|ref|YP_006350619.1| - 0.00016 21.2 0.0 0.0024 17.4 0.1 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|389848380|ref|YP_006350619.1| - 0.0023 17.4 0.0 0.0043 16.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|389848380|ref|YP_006350619.1| - 0.013 15.1 0.9 0.063 12.8 0.9 2.2 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|389848380|ref|YP_006350619.1| - 0.041 13.2 0.1 0.092 12.1 0.1 1.5 1 1 0 1 1 1 0 KaiC CBP_BcsQ PF06564.12 gi|389848380|ref|YP_006350619.1| - 0.049 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|389848380|ref|YP_006350619.1| - 0.063 12.7 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.6 gi|389848380|ref|YP_006350619.1| - 0.07 13.7 0.3 0.59 10.7 0.1 2.5 1 1 1 2 2 2 0 AAA domain Tir_receptor_N PF07490.11 gi|389848380|ref|YP_006350619.1| - 0.075 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus SRP54 PF00448.22 gi|389848380|ref|YP_006350619.1| - 0.12 12.0 0.1 0.31 10.6 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|389848380|ref|YP_006350619.1| - 0.16 12.1 2.5 0.23 11.6 0.6 2.5 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|389848380|ref|YP_006350619.1| - 0.17 11.6 0.1 0.37 10.5 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|389848380|ref|YP_006350619.1| - 0.2 10.8 0.2 0.33 10.1 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain Cytochrom_B559a PF00284.20 gi|389848381|ref|YP_006350620.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.19 gi|389848382|ref|YP_006350621.1| - 4.9e-48 163.1 0.3 6.2e-48 162.7 0.3 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|389848382|ref|YP_006350621.1| - 1.8e-19 69.5 0.0 3.2e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|389848382|ref|YP_006350621.1| - 0.00014 21.9 0.1 0.077 12.9 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase Zeta_toxin PF06414.12 gi|389848382|ref|YP_006350621.1| - 0.00037 19.8 0.1 0.0072 15.6 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin TrwB_AAD_bind PF10412.9 gi|389848382|ref|YP_006350621.1| - 0.0058 15.6 0.0 0.0087 15.0 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|389848382|ref|YP_006350621.1| - 0.018 15.4 0.0 0.06 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain CbiA PF01656.23 gi|389848382|ref|YP_006350621.1| - 0.02 14.9 0.0 0.03 14.4 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain TsaE PF02367.17 gi|389848382|ref|YP_006350621.1| - 0.023 14.7 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE GTP_EFTU PF00009.27 gi|389848382|ref|YP_006350621.1| - 0.029 13.9 2.5 0.45 10.0 2.1 2.2 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Polbeta PF18765.1 gi|389848382|ref|YP_006350621.1| - 0.17 12.0 0.0 8 6.6 0.0 2.3 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase UPRTase PF14681.6 gi|389848384|ref|YP_006350623.1| - 6.5e-48 162.9 0.0 7.6e-48 162.7 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|389848384|ref|YP_006350623.1| - 7.2e-09 35.3 0.2 1e-08 34.8 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF4548 PF15081.6 gi|389848385|ref|YP_006350624.1| - 0.045 13.6 0.0 0.051 13.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4548) NMT1_3 PF16868.5 gi|389848386|ref|YP_006350625.1| - 1.4e-66 224.9 2.1 1.8e-66 224.5 2.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|389848386|ref|YP_006350625.1| - 7.2e-11 42.4 0.7 2.3e-10 40.8 0.6 2.0 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|389848386|ref|YP_006350625.1| - 6.8e-08 32.4 2.3 1.4e-07 31.3 2.3 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|389848386|ref|YP_006350625.1| - 0.00075 19.2 1.9 0.0016 18.2 1.9 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|389848386|ref|YP_006350625.1| - 0.059 12.7 1.1 0.15 11.5 1.1 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NMT1_2 PF13379.6 gi|389848386|ref|YP_006350625.1| - 0.1 12.3 1.6 1.7 8.3 0.1 2.3 2 1 1 3 3 3 0 NMT1-like family DUF1850 PF08905.11 gi|389848387|ref|YP_006350626.1| - 9e-25 86.8 0.0 1.4e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.12 gi|389848388|ref|YP_006350627.1| - 1.4e-85 287.7 59.7 9.5e-58 196.0 29.5 3.2 3 0 0 3 3 3 2 Tripartite ATP-independent periplasmic transporter, DctM component UPF0029 PF01205.19 gi|662859604|ref|YP_006350628.2| - 7.8e-29 100.1 0.0 1e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|662859604|ref|YP_006350628.2| - 2.7e-12 46.4 0.7 5.3e-12 45.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|662859604|ref|YP_006350628.2| - 0.00056 19.9 0.0 0.0013 18.7 0.0 1.6 2 0 0 2 2 2 1 Elongation factor G C-terminus ACT_7 PF13840.6 gi|389848390|ref|YP_006350629.1| - 1.2e-05 25.0 0.1 3.1e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|389848390|ref|YP_006350629.1| - 0.00075 19.2 2.3 0.0011 18.7 0.1 2.5 3 1 0 3 3 3 1 ACT domain Lar_restr_allev PF14354.6 gi|389848391|ref|YP_006350630.1| - 0.15 12.5 0.1 0.31 11.4 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar IGPD PF00475.18 gi|389848392|ref|YP_006350631.1| - 1.4e-61 207.0 2.2 1.9e-61 206.6 2.2 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|389848393|ref|YP_006350632.1| - 3.8e-76 255.5 2.9 4.3e-76 255.4 2.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|389848393|ref|YP_006350632.1| - 2.6e-10 39.9 0.0 4.1e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|389848393|ref|YP_006350632.1| - 1.2e-09 38.0 7.0 1.6e-06 27.8 2.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|389848393|ref|YP_006350632.1| - 5.2e-07 29.2 5.1 0.00045 19.6 0.1 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|389848393|ref|YP_006350632.1| - 7.5e-07 28.6 0.1 0.00056 19.2 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|389848393|ref|YP_006350632.1| - 9.7e-07 28.2 0.8 0.0039 16.4 0.0 3.6 2 2 2 4 4 4 2 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|389848393|ref|YP_006350632.1| - 0.00012 21.6 3.4 0.0036 16.8 0.1 2.9 2 2 2 4 4 4 1 PcrB family TMP-TENI PF02581.17 gi|389848393|ref|YP_006350632.1| - 0.00033 20.0 0.7 0.016 14.5 0.2 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|389848393|ref|YP_006350632.1| - 0.0013 18.2 0.1 0.36 10.2 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|389848393|ref|YP_006350632.1| - 0.0016 17.4 0.6 0.069 12.0 0.0 2.2 2 0 0 2 2 2 1 Tryptophan synthase alpha chain DNA_pol_lambd_f PF10391.9 gi|389848393|ref|YP_006350632.1| - 0.0091 15.8 0.1 4.7 7.1 0.0 3.1 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda NanE PF04131.14 gi|389848393|ref|YP_006350632.1| - 0.0099 15.1 0.1 1.8 7.7 0.0 2.4 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|389848393|ref|YP_006350632.1| - 0.01 14.9 2.6 0.63 9.0 0.4 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|389848393|ref|YP_006350632.1| - 0.03 13.3 3.9 2.2 7.2 1.5 2.3 2 0 0 2 2 2 0 FMN-dependent dehydrogenase B12-binding PF02310.19 gi|389848393|ref|YP_006350632.1| - 0.12 12.4 3.0 2 8.5 0.1 2.4 1 1 0 2 2 2 0 B12 binding domain PGM_PMM_I PF02878.16 gi|389848395|ref|YP_006350634.1| - 1.1e-34 119.1 0.0 2e-34 118.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|389848395|ref|YP_006350634.1| - 1.5e-29 102.6 0.1 4.4e-29 101.1 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|389848395|ref|YP_006350634.1| - 8.1e-17 61.2 0.4 2.7e-16 59.5 0.2 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|389848395|ref|YP_006350634.1| - 2.2e-13 50.4 0.0 6.1e-13 49.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CinA_KH PF18146.1 gi|389848395|ref|YP_006350634.1| - 0.19 11.9 1.3 0.62 10.3 0.2 2.3 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain PriA_C PF18074.1 gi|389848395|ref|YP_006350634.1| - 0.19 12.6 0.0 30 5.5 0.0 3.0 3 0 0 3 3 3 0 Primosomal protein N C-terminal domain Acetyltransf_1 PF00583.25 gi|389848396|ref|YP_006350635.1| - 2.6e-13 50.2 0.0 3.3e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389848396|ref|YP_006350635.1| - 8.7e-10 38.9 0.0 1.3e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389848396|ref|YP_006350635.1| - 8.4e-08 32.2 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389848396|ref|YP_006350635.1| - 1e-05 26.2 0.0 1.2e-05 26.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848396|ref|YP_006350635.1| - 1.3e-05 25.1 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|389848396|ref|YP_006350635.1| - 0.014 15.1 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF397 PF04149.12 gi|389848396|ref|YP_006350635.1| - 0.019 15.0 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF397) Acetyltransf_CG PF14542.6 gi|389848396|ref|YP_006350635.1| - 0.039 14.1 0.0 0.79 9.9 0.0 2.3 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase Trp_oprn_chp PF09534.10 gi|662859605|ref|YP_006350636.2| - 0.0032 17.3 0.2 0.0035 17.1 0.2 1.1 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PRA-CH PF01502.18 gi|389848398|ref|YP_006350637.1| - 5e-35 119.2 0.3 7.9e-35 118.5 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.11 gi|389848399|ref|YP_006350638.1| - 3.7e-12 46.6 0.0 6.1e-10 39.5 0.0 2.4 2 0 0 2 2 2 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|389848399|ref|YP_006350638.1| - 5.2e-10 39.7 7.1 5.2e-10 39.7 7.1 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family Response_reg PF00072.24 gi|389848400|ref|YP_006350639.1| - 1.6e-21 76.6 0.1 1.9e-21 76.3 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|389848401|ref|YP_006350640.1| - 1.1e-17 64.2 0.0 2.3e-17 63.2 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|389848401|ref|YP_006350640.1| - 1.7e-14 54.3 0.2 2.6e-14 53.7 0.2 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|389848401|ref|YP_006350640.1| - 2e-06 28.2 0.1 3.9e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|389848401|ref|YP_006350640.1| - 4.6e-05 24.1 0.0 7.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 GAF domain Csm1_N PF18504.1 gi|389848401|ref|YP_006350640.1| - 0.023 15.0 2.6 3 8.3 0.1 3.0 2 0 0 2 2 2 0 Csm1 N-terminal domain SpoIISA_toxin PF14171.6 gi|389848401|ref|YP_006350640.1| - 0.063 13.0 0.1 0.094 12.4 0.1 1.2 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system Fes1 PF08609.10 gi|389848401|ref|YP_006350640.1| - 1.4 9.9 5.2 11 6.9 0.2 2.8 3 0 0 3 3 3 0 Nucleotide exchange factor Fes1 YlqD PF11068.8 gi|389848402|ref|YP_006350641.1| - 0.033 14.6 0.3 0.048 14.0 0.3 1.3 1 0 0 1 1 1 0 YlqD protein DUF4968 PF16338.5 gi|389848402|ref|YP_006350641.1| - 0.044 14.1 2.4 1.1 9.6 0.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4968) N_formyltrans_C PF18216.1 gi|389848402|ref|YP_006350641.1| - 0.11 12.2 0.1 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 N-formyltransferase dimerization C-terminal domain Phage_integrase PF00589.22 gi|389848403|ref|YP_006350642.1| - 1.2e-19 70.7 0.0 3.7e-19 69.1 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|389848403|ref|YP_006350642.1| - 0.019 15.2 0.1 0.052 13.8 0.1 1.7 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|389848409|ref|YP_006350648.1| - 4.3e-14 52.7 0.0 5.8e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Pro_isomerase PF00160.21 gi|389848410|ref|YP_006350649.1| - 0.0038 17.5 0.0 0.013 15.7 0.0 1.9 2 1 0 2 2 2 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD T2SSI PF02501.17 gi|389848410|ref|YP_006350649.1| - 0.051 13.7 0.1 0.14 12.3 0.0 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein I RHH_8 PF17723.1 gi|389848410|ref|YP_006350649.1| - 0.11 12.7 0.0 0.46 10.7 0.0 2.0 2 0 0 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family N_NLPC_P60 PF12912.7 gi|389848411|ref|YP_006350650.1| - 0.011 16.1 0.4 0.059 13.7 0.1 2.1 1 1 1 2 2 2 0 NLPC_P60 stabilising domain, N term DUF4259 PF14078.6 gi|389848411|ref|YP_006350650.1| - 0.038 14.7 1.3 0.093 13.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4259) DUF1002 PF06207.11 gi|389848411|ref|YP_006350650.1| - 0.092 12.3 0.2 0.6 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) HATPase_c_3 PF13589.6 gi|389848412|ref|YP_006350651.1| - 1.1e-05 25.3 0.0 2.7e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|389848412|ref|YP_006350651.1| - 0.0041 17.6 0.1 0.011 16.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N6_N4_Mtase PF01555.18 gi|389848413|ref|YP_006350652.1| - 5.2e-16 59.1 0.2 4.5e-10 39.6 0.0 2.7 2 0 0 2 2 2 2 DNA methylase MethyltransfD12 PF02086.15 gi|389848413|ref|YP_006350652.1| - 0.057 13.1 0.1 1.4 8.6 0.0 2.5 2 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase PadR PF03551.14 gi|389848414|ref|YP_006350653.1| - 0.0011 18.8 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|389848414|ref|YP_006350653.1| - 0.0017 18.5 0.0 0.0019 18.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_45 PF14947.6 gi|389848414|ref|YP_006350653.1| - 0.038 14.0 0.1 0.051 13.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|389848414|ref|YP_006350653.1| - 0.09 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FMP23 PF17315.2 gi|389848415|ref|YP_006350654.1| - 0.082 13.1 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 Found in mitochondrial proteome HATPase_c_3 PF13589.6 gi|389848416|ref|YP_006350655.1| - 0.00022 21.1 0.0 0.001 18.9 0.0 2.2 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF445 PF04286.12 gi|389848416|ref|YP_006350655.1| - 0.016 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF445) CDPS PF16715.5 gi|389848416|ref|YP_006350655.1| - 0.038 13.6 0.3 0.097 12.3 0.3 1.6 1 0 0 1 1 1 0 Cyclodipeptide synthase HATPase_c PF02518.26 gi|389848416|ref|YP_006350655.1| - 0.11 13.0 1.6 0.46 11.0 0.1 2.7 3 0 0 3 3 3 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TonB_N PF16031.5 gi|389848416|ref|YP_006350655.1| - 0.34 11.4 6.8 0.67 10.5 6.8 1.4 1 0 0 1 1 1 0 TonB polyproline region YabA PF06156.13 gi|389848416|ref|YP_006350655.1| - 0.44 11.2 2.5 1.4 9.6 2.5 1.8 1 0 0 1 1 1 0 Initiation control protein YabA APG6_N PF17675.1 gi|389848416|ref|YP_006350655.1| - 0.74 10.4 11.9 1.5 9.3 0.3 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region zf_C2H2_13 PF18508.1 gi|389848417|ref|YP_006350656.1| - 0.0019 17.7 0.2 0.012 15.1 0.0 2.2 3 0 0 3 3 3 1 Zinc finger domain Exo84_C PF16528.5 gi|389848417|ref|YP_006350656.1| - 0.087 12.6 0.1 0.1 12.4 0.1 1.2 1 0 0 1 1 1 0 Exocyst component 84 C-terminal PhnA_Zn_Ribbon PF08274.12 gi|389848419|ref|YP_006350658.1| - 0.0093 15.9 1.0 0.017 15.1 1.0 1.4 1 1 0 1 1 1 1 PhnA Zinc-Ribbon Rop PF01815.16 gi|389848419|ref|YP_006350658.1| - 0.049 13.5 0.3 0.056 13.3 0.3 1.1 1 0 0 1 1 1 0 Rop protein D5_N PF08706.11 gi|389848420|ref|YP_006350659.1| - 0.02 15.2 2.0 0.73 10.1 0.0 3.0 3 0 0 3 3 3 0 D5 N terminal like Fer2 PF00111.27 gi|389848422|ref|YP_006350661.1| - 2.2e-13 50.0 0.3 3.4e-13 49.3 0.3 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ig_5 PF16681.5 gi|389848422|ref|YP_006350661.1| - 0.016 15.6 0.1 0.29 11.6 0.0 2.1 2 0 0 2 2 2 0 Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain Fer2_4 PF13510.6 gi|389848422|ref|YP_006350661.1| - 0.038 14.0 0.1 0.084 12.9 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|389848423|ref|YP_006350662.1| - 9.5e-43 146.5 20.9 7.9e-42 143.5 20.7 2.1 1 1 0 1 1 1 1 Phosphate transporter family Cys_Met_Meta_PP PF01053.20 gi|389848424|ref|YP_006350663.1| - 1.9e-132 441.4 0.0 4.8e-131 436.8 0.0 2.0 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|389848424|ref|YP_006350663.1| - 3.3e-10 39.7 0.0 5.4e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|389848424|ref|YP_006350663.1| - 2.9e-05 23.5 0.6 9.2e-05 21.9 0.4 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|389848424|ref|YP_006350663.1| - 0.00013 21.1 0.0 0.00024 20.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|389848424|ref|YP_006350663.1| - 0.0074 15.6 0.1 0.021 14.1 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase SepSecS PF05889.13 gi|389848424|ref|YP_006350663.1| - 0.018 13.8 0.0 0.025 13.3 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Abhydrolase_1 PF00561.20 gi|389848425|ref|YP_006350664.1| - 1.3e-27 97.0 0.2 1.7e-27 96.7 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389848425|ref|YP_006350664.1| - 0.00038 19.8 0.1 0.00095 18.5 0.0 1.6 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|389848425|ref|YP_006350664.1| - 0.0027 17.4 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Cys_Met_Meta_PP PF01053.20 gi|389848427|ref|YP_006350666.1| - 1.2e-129 432.2 0.0 1.4e-129 432.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|389848427|ref|YP_006350666.1| - 5.6e-06 25.8 0.0 7.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|389848427|ref|YP_006350666.1| - 0.0087 15.1 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|389848427|ref|YP_006350666.1| - 0.034 13.4 2.4 0.066 12.5 2.4 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_10 PF04967.12 gi|389848428|ref|YP_006350667.1| - 3e-20 71.7 0.0 4.2e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.20 gi|389848428|ref|YP_006350667.1| - 0.0001 22.1 0.2 0.00021 21.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|389848428|ref|YP_006350667.1| - 0.0014 18.1 0.1 0.018 14.5 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|389848428|ref|YP_006350667.1| - 0.0028 17.6 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389848428|ref|YP_006350667.1| - 0.0028 17.7 0.0 0.0094 16.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|389848428|ref|YP_006350667.1| - 0.0044 16.5 0.1 0.0093 15.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|389848428|ref|YP_006350667.1| - 0.0062 16.7 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|389848428|ref|YP_006350667.1| - 0.0076 15.9 0.2 0.1 12.3 0.2 2.5 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389848428|ref|YP_006350667.1| - 0.0082 15.6 0.3 0.023 14.2 0.3 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|389848428|ref|YP_006350667.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.16 gi|389848428|ref|YP_006350667.1| - 0.016 14.9 0.2 0.063 13.1 0.2 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|389848428|ref|YP_006350667.1| - 0.028 14.5 1.9 0.67 10.1 0.1 2.7 3 0 0 3 3 3 0 Sigma-70 region 3 MarR_2 PF12802.7 gi|389848428|ref|YP_006350667.1| - 0.061 13.2 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|389848428|ref|YP_006350667.1| - 0.062 13.1 0.1 0.15 11.8 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.11 gi|389848428|ref|YP_006350667.1| - 0.075 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) GntR PF00392.21 gi|389848428|ref|YP_006350667.1| - 0.081 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|389848428|ref|YP_006350667.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|389848428|ref|YP_006350667.1| - 0.19 11.8 0.9 0.33 11.0 0.1 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain p450 PF00067.22 gi|389848429|ref|YP_006350668.1| - 4.9e-89 299.2 0.0 5.8e-89 298.9 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Aminotran_5 PF00266.19 gi|389848430|ref|YP_006350669.1| - 1.9e-31 109.4 0.0 2.3e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|389848430|ref|YP_006350669.1| - 0.029 13.7 0.1 0.14 11.4 0.1 1.9 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|389848430|ref|YP_006350669.1| - 0.074 12.2 0.0 0.13 11.5 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II DNA_ligase_aden PF01653.18 gi|389848431|ref|YP_006350670.1| - 1.3e-107 359.6 0.0 1.8e-107 359.1 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|389848431|ref|YP_006350670.1| - 3.4e-30 103.8 5.4 9.5e-30 102.3 5.4 1.8 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|389848431|ref|YP_006350670.1| - 9.1e-18 64.1 0.6 1.4e-14 53.9 0.1 4.4 4 1 0 4 4 4 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|389848431|ref|YP_006350670.1| - 6.2e-13 49.1 0.1 2.4e-06 28.0 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|389848431|ref|YP_006350670.1| - 6.2e-10 39.3 0.0 1.4e-09 38.2 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 gi|389848431|ref|YP_006350670.1| - 0.0002 21.3 2.7 0.0002 21.3 2.7 2.8 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.23 gi|389848431|ref|YP_006350670.1| - 0.0083 16.0 0.0 7.2 6.7 0.0 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif PTCB-BRCT PF12738.7 gi|389848431|ref|YP_006350670.1| - 0.16 12.0 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 twin BRCT domain ABC2_membrane_2 PF12679.7 gi|389848432|ref|YP_006350671.1| - 1.5e-50 172.1 17.5 2.1e-50 171.6 17.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848432|ref|YP_006350671.1| - 6e-08 32.5 9.3 6e-08 32.5 9.3 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389848432|ref|YP_006350671.1| - 8.9e-08 32.3 10.8 8.9e-08 32.3 10.8 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389848432|ref|YP_006350671.1| - 2.8e-07 30.0 18.5 2.8e-07 30.0 18.5 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389848433|ref|YP_006350672.1| - 1.1e-29 103.7 0.0 1.6e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848433|ref|YP_006350672.1| - 1.2e-11 44.9 0.1 4.6e-08 33.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848433|ref|YP_006350672.1| - 6.5e-09 36.4 0.0 2.6e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|389848433|ref|YP_006350672.1| - 0.00025 20.8 0.1 0.00087 19.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|389848433|ref|YP_006350672.1| - 0.0061 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|389848433|ref|YP_006350672.1| - 0.015 15.8 0.1 0.027 15.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389848433|ref|YP_006350672.1| - 0.023 15.1 0.0 0.046 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|389848433|ref|YP_006350672.1| - 0.029 13.8 0.0 5.3 6.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389848433|ref|YP_006350672.1| - 0.039 13.7 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|389848433|ref|YP_006350672.1| - 0.077 13.3 0.0 0.52 10.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain VIT1 PF01988.19 gi|389848435|ref|YP_006350674.1| - 6.2e-34 117.8 16.4 2.8e-18 66.6 1.4 2.0 1 1 1 2 2 2 2 VIT family LrgB PF04172.16 gi|389848435|ref|YP_006350674.1| - 0.024 14.2 1.7 0.024 14.2 1.7 2.1 2 0 0 2 2 2 0 LrgB-like family MCPsignal PF00015.21 gi|389848436|ref|YP_006350675.1| - 3.8e-42 144.0 49.7 1e-39 136.1 22.9 4.0 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|389848436|ref|YP_006350675.1| - 3.1e-06 27.4 7.0 7.7e-06 26.1 0.4 3.9 3 1 0 3 3 2 1 PAS fold DUF948 PF06103.11 gi|389848436|ref|YP_006350675.1| - 1.1e-05 25.6 40.4 7e-05 23.0 2.4 5.4 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) PAS PF00989.25 gi|389848436|ref|YP_006350675.1| - 7.7e-05 22.7 0.0 0.00034 20.6 0.0 2.3 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|389848436|ref|YP_006350675.1| - 0.00017 21.8 0.0 0.0008 19.6 0.0 2.2 1 0 0 1 1 1 1 PAS domain YkyA PF10368.9 gi|389848436|ref|YP_006350675.1| - 0.00028 20.6 23.4 0.0025 17.5 8.1 3.2 1 1 0 2 2 2 2 Putative cell-wall binding lipoprotein TPR_MLP1_2 PF07926.12 gi|389848436|ref|YP_006350675.1| - 0.0019 18.3 11.0 0.0019 18.3 11.0 4.0 3 1 1 4 4 4 1 TPR/MLP1/MLP2-like protein DUF3450 PF11932.8 gi|389848436|ref|YP_006350675.1| - 0.0024 17.2 6.0 0.0024 17.2 6.0 3.1 1 1 1 3 3 3 1 Protein of unknown function (DUF3450) ATG16 PF08614.11 gi|389848436|ref|YP_006350675.1| - 0.0029 17.9 7.5 0.0029 17.9 7.5 3.1 1 1 2 3 3 2 1 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.9 gi|389848436|ref|YP_006350675.1| - 0.0082 16.2 8.3 0.0082 16.2 8.3 3.0 2 1 1 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|389848436|ref|YP_006350675.1| - 0.011 15.7 24.7 0.029 14.4 5.1 4.2 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|389848436|ref|YP_006350675.1| - 0.016 15.0 0.4 0.016 15.0 0.4 3.1 4 0 0 4 4 3 0 Heat shock factor binding protein 1 TMPIT PF07851.13 gi|389848436|ref|YP_006350675.1| - 0.018 14.3 7.7 0.5 9.6 0.9 2.5 2 0 0 2 2 2 0 TMPIT-like protein IFT57 PF10498.9 gi|389848436|ref|YP_006350675.1| - 0.026 13.5 18.3 0.017 14.1 4.1 2.6 2 1 0 3 3 3 0 Intra-flagellar transport protein 57 AIP3 PF03915.13 gi|389848436|ref|YP_006350675.1| - 0.033 13.3 23.4 0.28 10.2 6.2 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 Spc7 PF08317.11 gi|389848436|ref|YP_006350675.1| - 0.099 11.5 28.5 0.16 10.8 10.9 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein Laminin_II PF06009.12 gi|389848436|ref|YP_006350675.1| - 0.15 12.0 36.6 0.029 14.4 2.8 4.8 2 2 1 4 4 4 0 Laminin Domain II Syntaxin-6_N PF09177.11 gi|389848436|ref|YP_006350675.1| - 0.19 12.3 28.0 0.2 12.2 1.4 4.9 2 2 2 4 4 3 0 Syntaxin 6, N-terminal PhageMin_Tail PF10145.9 gi|389848436|ref|YP_006350675.1| - 0.37 10.6 33.9 1.8 8.4 20.2 3.1 1 1 2 3 3 3 0 Phage-related minor tail protein FlgN PF05130.12 gi|389848436|ref|YP_006350675.1| - 0.39 11.2 24.9 0.52 10.8 7.5 4.2 1 1 2 4 4 4 0 FlgN protein LXG PF04740.12 gi|389848436|ref|YP_006350675.1| - 0.67 9.6 25.1 0.45 10.2 1.5 3.7 2 2 1 3 3 3 0 LXG domain of WXG superfamily Spectrin PF00435.21 gi|389848436|ref|YP_006350675.1| - 0.77 10.3 19.5 2.6 8.6 2.8 4.1 1 1 3 5 5 5 0 Spectrin repeat DUF745 PF05335.13 gi|389848436|ref|YP_006350675.1| - 0.86 9.3 41.4 0.13 12.0 16.5 4.1 2 1 3 5 5 4 0 Protein of unknown function (DUF745) Cnd1_N PF12922.7 gi|389848436|ref|YP_006350675.1| - 1.3 8.8 7.4 0.098 12.5 1.1 2.1 2 1 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1, N-term UPF0449 PF15136.6 gi|389848436|ref|YP_006350675.1| - 1.8 9.1 9.4 2.4 8.7 0.3 3.5 2 1 1 3 3 3 0 Uncharacterised protein family UPF0449 SCO1-SenC PF02630.14 gi|389848436|ref|YP_006350675.1| - 1.8 8.4 9.2 7.3 6.5 1.7 3.0 2 2 0 2 2 2 0 SCO1/SenC Fib_alpha PF08702.10 gi|389848436|ref|YP_006350675.1| - 2.1 8.5 17.6 4.1 7.6 2.9 3.7 2 2 1 4 4 4 0 Fibrinogen alpha/beta chain family Atg14 PF10186.9 gi|389848436|ref|YP_006350675.1| - 2.4 7.2 10.1 4.3 6.3 1.5 2.6 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF489 PF04356.12 gi|389848436|ref|YP_006350675.1| - 2.7 8.0 8.5 3.6 7.5 1.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF489) DUF1759 PF03564.15 gi|389848436|ref|YP_006350675.1| - 2.8 7.9 9.0 4.6 7.2 0.2 4.0 2 2 3 5 5 5 0 Protein of unknown function (DUF1759) FUSC PF04632.12 gi|389848436|ref|YP_006350675.1| - 2.8 6.3 32.9 0.93 8.0 17.1 2.3 1 1 0 2 2 2 0 Fusaric acid resistance protein family Sec34 PF04136.15 gi|389848436|ref|YP_006350675.1| - 3 7.7 18.5 2.2 8.2 1.9 4.9 2 2 4 6 6 6 0 Sec34-like family Syntaxin_2 PF14523.6 gi|389848436|ref|YP_006350675.1| - 3.9 7.9 13.0 4.6 7.7 1.0 3.7 3 1 1 4 4 4 0 Syntaxin-like protein PhaC_N PF07167.13 gi|389848436|ref|YP_006350675.1| - 4.3 7.0 6.2 11 5.6 1.1 2.7 1 1 1 3 3 3 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Baculo_F PF12259.8 gi|389848436|ref|YP_006350675.1| - 5.4 5.4 9.8 2.8 6.4 4.3 2.4 2 1 0 2 2 2 0 Baculovirus F protein WXG100 PF06013.12 gi|389848436|ref|YP_006350675.1| - 8.2 6.7 32.0 0.39 11.0 4.2 6.8 2 2 4 7 7 7 0 Proteins of 100 residues with WXG Laminin_I PF06008.14 gi|389848436|ref|YP_006350675.1| - 8.5 6.0 30.1 0.33 10.6 6.7 3.8 1 1 2 3 3 3 0 Laminin Domain I IFT46_B_C PF12317.8 gi|389848436|ref|YP_006350675.1| - 8.8 6.0 10.9 6.6 6.4 2.8 2.6 1 1 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal UvrC_HhH_N PF08459.11 gi|389848437|ref|YP_006350676.1| - 1.1e-40 139.1 0.0 1.8e-40 138.4 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|389848437|ref|YP_006350676.1| - 1.5e-13 51.1 0.1 5.5e-13 49.3 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|389848437|ref|YP_006350676.1| - 2.2e-12 46.2 0.6 1.6e-07 30.8 0.2 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|389848437|ref|YP_006350676.1| - 1.3e-08 34.8 0.0 2.9e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 gi|389848437|ref|YP_006350676.1| - 6.1e-08 32.2 1.8 1.6e-07 30.9 1.8 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|389848437|ref|YP_006350676.1| - 1.3e-06 28.6 0.0 2.4e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain IMS_HHH PF11798.8 gi|389848437|ref|YP_006350676.1| - 1.4e-05 25.1 0.0 0.05 13.9 0.0 2.6 2 0 0 2 2 2 2 IMS family HHH motif 5_3_exonuc PF01367.20 gi|389848437|ref|YP_006350676.1| - 2.4e-05 24.8 0.0 0.035 14.7 0.0 3.3 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|389848437|ref|YP_006350676.1| - 0.011 16.1 0.0 2.7 8.4 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|389848437|ref|YP_006350676.1| - 0.039 14.2 0.0 0.19 12.0 0.0 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|389848437|ref|YP_006350676.1| - 0.081 13.2 0.0 1.9 8.8 0.0 2.5 2 0 0 2 2 2 0 Pathogenicity locus FliT PF05400.13 gi|389848437|ref|YP_006350676.1| - 0.21 12.5 4.3 12 6.8 0.1 3.5 3 0 0 3 3 3 0 Flagellar protein FliT Ldh_1_N PF00056.23 gi|662859606|ref|YP_006350677.2| - 7.2e-39 133.1 0.2 1e-38 132.6 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|662859606|ref|YP_006350677.2| - 3.6e-27 95.3 0.0 5.8e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Auto_anti-p27 PF06677.12 gi|662859607|ref|YP_006350678.2| - 7.8e-16 58.0 1.0 1.1e-15 57.5 1.0 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|662859607|ref|YP_006350678.2| - 0.00089 19.2 1.6 0.0016 18.4 1.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|662859607|ref|YP_006350678.2| - 0.021 14.8 0.8 0.034 14.1 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|662859607|ref|YP_006350678.2| - 0.03 14.3 2.0 0.048 13.6 2.0 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|662859607|ref|YP_006350678.2| - 0.16 11.5 3.1 0.5 9.8 3.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Usp PF00582.26 gi|389848440|ref|YP_006350679.1| - 2.7e-19 70.1 0.2 3.8e-19 69.6 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family ERCC4 PF02732.15 gi|389848441|ref|YP_006350680.1| - 5.7e-24 85.1 0.0 1.3e-23 83.9 0.0 1.6 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|389848441|ref|YP_006350680.1| - 6e-23 81.3 0.0 2.3e-22 79.4 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|389848441|ref|YP_006350680.1| - 1.4e-15 57.5 0.0 4.4e-15 55.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|389848441|ref|YP_006350680.1| - 4.1e-13 49.7 0.0 9.1e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|389848441|ref|YP_006350680.1| - 1.8e-11 44.4 0.5 8.7e-11 42.3 0.2 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|389848441|ref|YP_006350680.1| - 1.9e-10 40.6 0.4 1.2e-09 38.1 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|389848441|ref|YP_006350680.1| - 3.3e-07 29.8 0.2 8.5e-05 22.2 0.0 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|389848441|ref|YP_006350680.1| - 0.017 15.4 0.0 0.39 11.2 0.0 3.0 2 0 0 2 2 2 0 IMS family HHH motif 5_3_exonuc PF01367.20 gi|389848441|ref|YP_006350680.1| - 0.02 15.5 0.0 0.2 12.3 0.0 2.6 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold RuvB_N PF05496.12 gi|389848441|ref|YP_006350680.1| - 0.03 14.1 0.2 0.13 12.0 0.0 2.1 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain DUF4407 PF14362.6 gi|389848441|ref|YP_006350680.1| - 0.11 11.9 11.9 0.24 10.7 4.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Helicase_C_2 PF13307.6 gi|389848441|ref|YP_006350680.1| - 0.19 11.9 1.1 0.52 10.5 0.1 2.3 2 0 0 2 2 2 0 Helicase C-terminal domain HHH_8 PF14716.6 gi|389848441|ref|YP_006350680.1| - 0.27 11.6 1.6 1.7 9.1 0.0 3.1 3 1 0 3 3 3 0 Helix-hairpin-helix domain DUF4618 PF15397.6 gi|389848441|ref|YP_006350680.1| - 0.56 9.6 5.8 0.25 10.7 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Fez1 PF06818.15 gi|389848441|ref|YP_006350680.1| - 0.84 10.1 6.8 1.4 9.4 4.2 2.2 2 0 0 2 2 2 0 Fez1 Spc7 PF08317.11 gi|389848441|ref|YP_006350680.1| - 2.6 6.9 5.7 7.9 5.3 3.0 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF2072 PF09845.9 gi|662859608|ref|YP_006350681.2| - 2.1e-29 102.5 16.1 1.1e-21 77.4 16.1 3.3 1 1 0 1 1 1 1 Zn-ribbon containing protein zf-C2H2_6 PF13912.6 gi|662859608|ref|YP_006350681.2| - 0.11 12.5 0.2 0.21 11.7 0.2 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|662859608|ref|YP_006350681.2| - 0.29 11.3 2.8 0.69 10.1 2.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF1610 PF07754.11 gi|662859608|ref|YP_006350681.2| - 7.2 6.7 8.0 68 3.6 8.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) DUF2073 PF09846.9 gi|389848443|ref|YP_006350682.1| - 2.7e-46 155.7 0.3 3.4e-46 155.4 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|389848444|ref|YP_006350683.1| - 5.4e-15 55.5 0.0 7.5e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|389848444|ref|YP_006350683.1| - 1.1e-10 41.3 0.5 0.00016 21.3 0.1 3.1 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|389848444|ref|YP_006350683.1| - 3.8e-08 33.0 0.0 0.0001 21.8 0.1 2.6 1 1 2 3 3 3 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|389848444|ref|YP_006350683.1| - 8.8e-06 25.7 0.1 0.042 13.7 0.0 2.3 2 1 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|389848444|ref|YP_006350683.1| - 3.1e-05 23.5 1.0 0.00046 19.8 1.0 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Ras PF00071.22 gi|389848444|ref|YP_006350683.1| - 0.00013 21.6 0.1 0.029 14.0 0.0 2.4 2 1 0 2 2 2 1 Ras family Septin PF00735.18 gi|389848444|ref|YP_006350683.1| - 0.00017 21.0 0.0 0.00034 20.0 0.0 1.5 1 1 1 2 2 2 1 Septin SRPRB PF09439.10 gi|389848444|ref|YP_006350683.1| - 0.0002 20.8 0.0 0.084 12.3 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit NB-ARC PF00931.22 gi|389848444|ref|YP_006350683.1| - 0.00046 19.5 0.0 0.00081 18.6 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Roc PF08477.13 gi|389848444|ref|YP_006350683.1| - 0.00063 20.0 0.0 0.0075 16.5 0.0 2.1 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|389848444|ref|YP_006350683.1| - 0.00071 20.1 0.0 0.0028 18.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|389848444|ref|YP_006350683.1| - 0.0012 18.9 0.0 0.002 18.1 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA PF00004.29 gi|389848444|ref|YP_006350683.1| - 0.0033 17.9 0.0 0.023 15.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|389848444|ref|YP_006350683.1| - 0.0033 17.2 0.0 0.0071 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|389848444|ref|YP_006350683.1| - 0.0034 17.7 0.1 0.14 12.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|389848444|ref|YP_006350683.1| - 0.0035 17.3 0.1 0.026 14.4 0.0 2.0 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea Dynamin_N PF00350.23 gi|389848444|ref|YP_006350683.1| - 0.0073 16.4 0.0 0.95 9.5 0.1 2.5 1 1 1 2 2 2 1 Dynamin family RNA_helicase PF00910.22 gi|389848444|ref|YP_006350683.1| - 0.0097 16.3 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 RNA helicase cobW PF02492.19 gi|389848444|ref|YP_006350683.1| - 0.011 15.4 0.3 3.5 7.2 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|389848444|ref|YP_006350683.1| - 0.014 15.7 0.0 0.021 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|389848444|ref|YP_006350683.1| - 0.018 15.6 0.0 0.03 14.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter MeaB PF03308.16 gi|389848444|ref|YP_006350683.1| - 0.022 13.8 0.1 1.3 7.9 0.0 2.8 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|389848444|ref|YP_006350683.1| - 0.033 14.0 0.0 2 8.1 0.1 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein RuvB_N PF05496.12 gi|389848444|ref|YP_006350683.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|389848444|ref|YP_006350683.1| - 0.057 13.3 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|389848444|ref|YP_006350683.1| - 0.08 12.5 0.0 0.22 11.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|389848444|ref|YP_006350683.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF1184 PF06683.11 gi|389848444|ref|YP_006350683.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) AAA_22 PF13401.6 gi|389848444|ref|YP_006350683.1| - 0.18 12.1 0.0 0.5 10.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain Cdc6_C PF09079.11 gi|389848446|ref|YP_006350684.1| - 2.1e-11 43.6 0.0 5.2e-11 42.4 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|389848446|ref|YP_006350684.1| - 3e-08 34.3 1.5 4.2e-08 33.7 0.2 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389848446|ref|YP_006350684.1| - 2.2e-07 31.2 0.0 6.5e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|389848446|ref|YP_006350684.1| - 1.1e-06 29.1 0.0 3.2e-06 27.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|389848446|ref|YP_006350684.1| - 0.0011 18.9 0.0 0.0028 17.6 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_2 PF07724.14 gi|389848446|ref|YP_006350684.1| - 0.0034 17.5 0.0 0.0068 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|389848446|ref|YP_006350684.1| - 0.0071 16.4 0.4 1.1 9.3 0.1 2.8 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) DUF2791 PF10923.8 gi|389848446|ref|YP_006350684.1| - 0.016 14.1 0.1 0.029 13.2 0.1 1.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) ABC_tran PF00005.27 gi|389848446|ref|YP_006350684.1| - 0.026 15.0 0.0 0.066 13.7 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DUF815 PF05673.13 gi|389848446|ref|YP_006350684.1| - 0.03 13.5 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|389848446|ref|YP_006350684.1| - 0.037 13.7 0.0 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|389848446|ref|YP_006350684.1| - 0.12 12.9 0.1 0.36 11.4 0.1 1.8 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|389848448|ref|YP_006350686.1| - 2.9e-20 72.9 0.0 4.1e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848448|ref|YP_006350686.1| - 1.9e-10 40.9 0.0 2.7e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|389848448|ref|YP_006350686.1| - 4.6e-07 29.3 0.0 7.5e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|389848448|ref|YP_006350686.1| - 5.8e-05 22.7 0.0 0.00017 21.1 0.0 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|389848448|ref|YP_006350686.1| - 0.00036 19.9 0.0 0.016 14.5 0.0 2.2 1 1 1 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|389848448|ref|YP_006350686.1| - 0.0046 16.4 0.0 0.0077 15.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|389848448|ref|YP_006350686.1| - 0.019 14.6 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|389848448|ref|YP_006350686.1| - 0.071 12.6 0.0 0.18 11.2 0.0 1.6 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|389848448|ref|YP_006350686.1| - 0.22 11.3 0.0 0.44 10.3 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DZR PF12773.7 gi|389848449|ref|YP_006350687.1| - 0.002 18.1 0.2 0.0024 17.9 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|389848449|ref|YP_006350687.1| - 0.0079 15.9 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|389848449|ref|YP_006350687.1| - 0.018 14.7 1.3 0.04 13.7 0.0 1.9 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|389848449|ref|YP_006350687.1| - 0.029 14.5 1.1 0.12 12.6 1.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Rhodanese_C PF12368.8 gi|389848449|ref|YP_006350687.1| - 0.031 14.6 0.4 2.2 8.7 0.0 2.0 1 1 1 2 2 2 0 Rhodanase C-terminal zinc_ribbon_9 PF14369.6 gi|389848449|ref|YP_006350687.1| - 0.057 13.7 2.3 3.3 8.0 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon DiS_P_DiS PF06750.13 gi|389848449|ref|YP_006350687.1| - 0.063 13.4 0.3 0.17 12.0 0.1 1.7 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-ribbon_3 PF13248.6 gi|389848449|ref|YP_006350687.1| - 0.063 12.7 1.5 0.65 9.5 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.12 gi|389848449|ref|YP_006350687.1| - 0.11 11.0 0.1 0.11 11.0 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) TFIIS_C PF01096.18 gi|389848449|ref|YP_006350687.1| - 0.14 12.1 2.8 0.7 9.8 2.9 1.9 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) HTH_10 PF04967.12 gi|389848450|ref|YP_006350688.1| - 7.4e-21 73.7 0.7 1.3e-20 72.9 0.7 1.4 1 0 0 1 1 1 1 HTH DNA binding domain CHAD PF05235.14 gi|389848450|ref|YP_006350688.1| - 0.0021 18.0 4.1 0.0038 17.2 4.1 1.3 1 0 0 1 1 1 1 CHAD domain HTH_24 PF13412.6 gi|389848450|ref|YP_006350688.1| - 0.016 14.7 0.0 0.071 12.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|389848450|ref|YP_006350688.1| - 0.047 13.9 0.1 0.16 12.2 0.1 1.9 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 gi|389848450|ref|YP_006350688.1| - 0.065 13.1 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Lactamase_B PF00753.27 gi|389848451|ref|YP_006350689.1| - 6e-14 52.5 7.3 6.4e-13 49.2 7.3 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|389848451|ref|YP_006350689.1| - 1.1e-13 51.6 0.0 2.8e-13 50.3 0.0 1.7 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|389848451|ref|YP_006350689.1| - 0.0013 18.3 1.9 0.0056 16.2 1.9 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain MFS_1 PF07690.16 gi|389848452|ref|YP_006350690.1| - 7.9e-37 127.0 39.6 9.9e-19 67.5 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389848452|ref|YP_006350690.1| - 9.4e-06 24.7 19.9 0.014 14.3 5.5 3.4 2 2 0 2 2 2 2 MFS_1 like family adh_short_C2 PF13561.6 gi|389848454|ref|YP_006350692.1| - 3e-62 210.2 1.9 3.9e-62 209.9 1.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389848454|ref|YP_006350692.1| - 5.5e-61 205.4 0.9 7e-61 205.1 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389848454|ref|YP_006350692.1| - 2.7e-14 53.5 0.1 3.5e-14 53.1 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389848454|ref|YP_006350692.1| - 8.1e-05 22.2 0.1 0.00014 21.4 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|389848454|ref|YP_006350692.1| - 0.0086 15.4 0.0 0.02 14.2 0.0 1.6 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.17 gi|389848454|ref|YP_006350692.1| - 0.022 13.8 0.1 0.058 12.5 0.1 1.7 1 1 1 2 2 2 0 RmlD substrate binding domain F420_oxidored PF03807.17 gi|389848454|ref|YP_006350692.1| - 0.057 14.0 0.0 0.12 13.0 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GDP_Man_Dehyd PF16363.5 gi|389848454|ref|YP_006350692.1| - 0.087 12.2 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase HAD_2 PF13419.6 gi|389848456|ref|YP_006350694.1| - 4.5e-21 75.7 0.0 5.3e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389848456|ref|YP_006350694.1| - 3.6e-13 50.3 0.1 1.7e-12 48.1 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|389848456|ref|YP_006350694.1| - 1e-10 41.5 0.5 3e-10 40.0 0.5 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Acyl-CoA_dh_1 PF00441.24 gi|389848457|ref|YP_006350695.1| - 1.1e-39 136.0 3.5 1.5e-39 135.6 3.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389848457|ref|YP_006350695.1| - 3.7e-23 81.6 0.0 7.6e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|389848457|ref|YP_006350695.1| - 7.1e-18 65.3 0.0 1.5e-17 64.3 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|389848457|ref|YP_006350695.1| - 2.8e-16 60.0 5.9 2.8e-16 60.0 5.9 1.9 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|389848457|ref|YP_006350695.1| - 0.0032 17.2 0.0 0.0075 16.0 0.0 1.6 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal APH PF01636.23 gi|389848459|ref|YP_006350697.1| - 6.9e-46 157.1 5.3 9.8e-46 156.6 5.3 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|389848459|ref|YP_006350697.1| - 0.00069 19.0 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Ecdysteroid kinase HTH_33 PF13592.6 gi|389848459|ref|YP_006350697.1| - 0.022 14.4 0.3 0.2 11.4 0.1 2.5 3 0 0 3 3 3 0 Winged helix-turn helix DUF1679 PF07914.11 gi|389848459|ref|YP_006350697.1| - 0.027 13.3 0.0 0.038 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) 3HCDH_N PF02737.18 gi|389848460|ref|YP_006350698.1| - 2.7e-61 206.6 0.0 4.5e-61 205.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|389848460|ref|YP_006350698.1| - 3.7e-54 183.7 0.0 5e-54 183.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|389848460|ref|YP_006350698.1| - 7.9e-44 148.2 0.3 2.9e-22 79.1 0.0 3.2 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|389848460|ref|YP_006350698.1| - 8.3e-31 107.7 0.0 4e-27 95.6 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|389848460|ref|YP_006350698.1| - 0.0078 16.4 0.1 0.021 15.0 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389848460|ref|YP_006350698.1| - 0.061 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|389848460|ref|YP_006350698.1| - 0.13 12.8 0.3 0.51 11.0 0.3 2.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|389848460|ref|YP_006350698.1| - 0.16 11.5 0.1 0.34 10.5 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pup PF05639.11 gi|389848460|ref|YP_006350698.1| - 2.1 9.3 11.0 1.7 9.6 2.7 3.5 3 0 0 3 3 3 0 Pup-like protein HTH_Tnp_Tc3_2 PF01498.18 gi|389848461|ref|YP_006350699.1| - 0.0002 21.5 0.1 0.00059 20.0 0.1 1.7 2 0 0 2 2 2 1 Transposase HTH_24 PF13412.6 gi|389848461|ref|YP_006350699.1| - 0.00062 19.3 0.5 0.017 14.7 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_32 PF13565.6 gi|389848461|ref|YP_006350699.1| - 0.0081 16.8 0.4 0.016 15.8 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|389848461|ref|YP_006350699.1| - 0.16 11.9 0.8 0.31 10.9 0.8 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Acyl-CoA_dh_1 PF00441.24 gi|389848462|ref|YP_006350700.1| - 1.1e-54 184.8 2.3 1.6e-54 184.2 2.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|389848462|ref|YP_006350700.1| - 1.6e-31 109.3 0.4 1.6e-31 109.3 0.4 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|389848462|ref|YP_006350700.1| - 4.5e-28 97.3 0.1 8.2e-28 96.5 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|389848462|ref|YP_006350700.1| - 1.5e-27 96.5 9.8 2.5e-27 95.8 9.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|389848462|ref|YP_006350700.1| - 1.6e-05 24.8 1.2 0.00012 21.9 1.2 2.2 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|389848462|ref|YP_006350700.1| - 0.0035 16.5 0.5 0.0073 15.4 0.5 1.6 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal AMP-binding PF00501.28 gi|389848464|ref|YP_006350702.1| - 3.6e-111 371.8 0.0 4.2e-111 371.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389848464|ref|YP_006350702.1| - 3.9e-23 82.2 0.5 1.4e-22 80.5 0.6 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain SCP2 PF02036.17 gi|389848465|ref|YP_006350703.1| - 9.6e-07 29.2 0.0 1.1e-06 29.1 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family CBM_10 PF02013.16 gi|389848465|ref|YP_006350703.1| - 0.68 10.5 5.8 3.4 8.2 0.4 2.4 2 0 0 2 2 2 0 Cellulose or protein binding domain ADH_N PF08240.12 gi|389848466|ref|YP_006350704.1| - 9e-27 93.1 0.1 2.7e-26 91.6 0.1 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|389848466|ref|YP_006350704.1| - 2e-23 82.8 0.0 3.2e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389848466|ref|YP_006350704.1| - 7.1e-05 23.9 0.0 0.00017 22.6 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|389848466|ref|YP_006350704.1| - 0.00011 21.5 0.6 0.00017 21.0 0.6 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|389848466|ref|YP_006350704.1| - 0.0018 17.8 0.4 0.003 17.1 0.4 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|389848466|ref|YP_006350704.1| - 0.029 14.6 0.4 0.048 13.9 0.4 1.3 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_11 PF08241.12 gi|389848466|ref|YP_006350704.1| - 0.03 15.0 0.1 0.058 14.0 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|389848466|ref|YP_006350704.1| - 0.069 12.5 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|389848466|ref|YP_006350704.1| - 0.11 13.2 0.1 0.19 12.5 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.22 gi|389848467|ref|YP_006350705.1| - 4.8e-158 526.5 0.0 5.4e-158 526.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|389848467|ref|YP_006350705.1| - 0.0022 17.5 0.0 0.11 12.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) Invasin_D3 PF09134.10 gi|389848467|ref|YP_006350705.1| - 0.0023 18.2 2.7 0.0052 17.1 2.7 1.6 1 0 0 1 1 1 1 Invasin, domain 3 MFS_1 PF07690.16 gi|389848468|ref|YP_006350706.1| - 1.9e-36 125.7 47.9 5.3e-24 84.8 24.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|389848468|ref|YP_006350706.1| - 4.6e-08 32.4 8.0 4.6e-08 32.4 8.0 2.1 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_Mycoplasma PF07672.13 gi|389848468|ref|YP_006350706.1| - 0.071 12.4 4.4 0.092 12.0 1.3 2.4 3 0 0 3 3 3 0 Mycoplasma MFS transporter Alkyl_sulf_dimr PF14863.6 gi|389848469|ref|YP_006350707.1| - 1.5e-26 93.5 0.1 3.3e-26 92.4 0.1 1.5 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|389848469|ref|YP_006350707.1| - 4.4e-20 72.5 3.7 8.9e-20 71.5 3.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389848469|ref|YP_006350707.1| - 3e-06 26.9 1.0 6.1e-06 25.9 1.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Alkyl_sulf_dimr PF14863.6 gi|389848470|ref|YP_006350708.1| - 7.1e-09 36.2 0.2 8.3e-09 36.0 0.2 1.0 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation HTH_10 PF04967.12 gi|389848471|ref|YP_006350709.1| - 8.8e-16 57.5 0.1 1.6e-15 56.6 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|389848471|ref|YP_006350709.1| - 2.2e-05 23.8 0.3 4.8e-05 22.8 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|389848471|ref|YP_006350709.1| - 0.0057 16.3 0.9 0.1 12.3 0.2 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 SgrR_N PF12793.7 gi|389848471|ref|YP_006350709.1| - 0.013 15.7 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_1 PF00126.27 gi|389848471|ref|YP_006350709.1| - 0.049 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_4 PF13613.6 gi|389848471|ref|YP_006350709.1| - 0.06 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease GerE PF00196.19 gi|389848471|ref|YP_006350709.1| - 0.061 12.9 0.2 14 5.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HBM PF16591.5 gi|389848471|ref|YP_006350709.1| - 0.065 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Helical bimodular sensor domain Vac_Fusion PF02346.16 gi|389848471|ref|YP_006350709.1| - 0.09 12.4 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 HTH_Mga PF08280.11 gi|389848471|ref|YP_006350709.1| - 0.099 12.7 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Homeodomain PF00046.29 gi|389848471|ref|YP_006350709.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Homeodomain Acetyltransf_11 PF13720.6 gi|389848471|ref|YP_006350709.1| - 0.14 12.6 0.1 0.33 11.4 0.1 1.6 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 UpxZ PF06603.11 gi|389848472|ref|YP_006350710.1| - 0.0044 17.3 0.2 0.0067 16.7 0.2 1.4 1 0 0 1 1 1 1 UpxZ family of transcription anti-terminator antagonists Sulfotransfer_4 PF17784.1 gi|389848472|ref|YP_006350710.1| - 0.062 13.1 1.1 0.075 12.8 1.1 1.1 1 0 0 1 1 1 0 Sulfotransferase domain ECH_1 PF00378.20 gi|389848472|ref|YP_006350710.1| - 0.13 11.6 0.1 0.15 11.4 0.1 1.1 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Z1 PF10593.9 gi|389848472|ref|YP_006350710.1| - 0.37 10.3 3.5 0.41 10.1 3.5 1.1 1 0 0 1 1 1 0 Z1 domain Carbpep_Y_N PF05388.11 gi|389848472|ref|YP_006350710.1| - 0.59 10.7 3.3 8.6 6.9 0.2 2.1 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide MRPL52 PF18699.1 gi|389848472|ref|YP_006350710.1| - 0.61 10.3 5.6 8.9 6.6 2.2 2.2 1 1 1 2 2 2 0 Mitoribosomal protein mL52 EHN PF06441.12 gi|389848472|ref|YP_006350710.1| - 0.74 10.2 2.9 0.97 9.8 2.5 1.4 1 1 0 1 1 1 0 Epoxide hydrolase N terminus DDE_Tnp_IS240 PF13610.6 gi|389848473|ref|YP_006350711.1| - 2.6e-07 30.9 0.0 2.7e-07 30.9 0.0 1.0 1 0 0 1 1 1 1 DDE domain Uds1 PF15456.6 gi|389848476|ref|YP_006350714.1| - 0.065 13.4 0.2 0.065 13.4 0.2 1.6 2 0 0 2 2 2 0 Up-regulated During Septation NYD-SP28 PF14772.6 gi|389848476|ref|YP_006350714.1| - 0.49 10.5 4.7 0.23 11.5 0.7 2.2 2 0 0 2 2 2 0 Sperm tail DUF1910 PF08928.10 gi|389848476|ref|YP_006350714.1| - 1 9.4 5.5 10 6.1 0.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) RHH_1 PF01402.21 gi|389848477|ref|YP_006350715.1| - 0.038 13.9 0.3 8.6 6.5 0.0 2.3 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family GIDE PF12483.8 gi|389848479|ref|YP_006350717.1| - 7.5e-06 25.4 1.2 8.9e-05 21.9 0.0 2.3 3 0 0 3 3 3 2 E3 Ubiquitin ligase Mor PF08765.11 gi|389848483|ref|YP_006350721.1| - 0.087 12.8 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 Mor transcription activator family SMC_ScpB PF04079.16 gi|389848483|ref|YP_006350721.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB DMAP_binding PF06464.11 gi|389848483|ref|YP_006350721.1| - 0.2 12.5 3.1 0.27 12.1 0.1 2.2 2 1 1 3 3 3 0 DMAP1-binding Domain CytB6-F_Fe-S PF08802.10 gi|389848484|ref|YP_006350722.1| - 0.033 14.2 0.1 0.054 13.5 0.1 1.3 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit HTH_27 PF13463.6 gi|389848485|ref|YP_006350723.1| - 6.7e-06 26.5 0.1 1e-05 25.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|389848485|ref|YP_006350723.1| - 1.3e-05 25.0 0.1 1.8e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|389848485|ref|YP_006350723.1| - 2.1e-05 24.5 0.4 3.6e-05 23.7 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389848485|ref|YP_006350723.1| - 6.6e-05 22.7 0.2 0.00013 21.8 0.2 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389848485|ref|YP_006350723.1| - 0.0035 17.2 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 gi|389848485|ref|YP_006350723.1| - 0.014 15.4 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_24 PF13412.6 gi|389848485|ref|YP_006350723.1| - 0.023 14.2 0.7 0.034 13.7 0.7 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.9 gi|389848485|ref|YP_006350723.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DDE_Tnp_IS240 PF13610.6 gi|389848486|ref|YP_006350724.1| - 6.6e-20 71.8 0.2 9.7e-20 71.2 0.0 1.4 2 0 0 2 2 2 1 DDE domain rve PF00665.26 gi|389848486|ref|YP_006350724.1| - 0.0073 16.5 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain rve_3 PF13683.6 gi|389848487|ref|YP_006350725.1| - 4.7e-09 35.9 0.0 4.7e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389848487|ref|YP_006350725.1| - 0.028 14.5 0.1 0.099 12.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) rve_2 PF13333.6 gi|389848487|ref|YP_006350725.1| - 0.098 12.8 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Integrase core domain SBP_bac_5 PF00496.22 gi|389848489|ref|YP_006350727.1| - 4.2e-74 249.8 4.9 5.1e-74 249.5 4.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389848489|ref|YP_006350727.1| - 0.00064 19.5 2.2 0.0013 18.4 2.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pox_C7_F8A PF03287.14 gi|389848489|ref|YP_006350727.1| - 0.067 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Poxvirus C7/F8A protein BPD_transp_1 PF00528.22 gi|389848490|ref|YP_006350728.1| - 9.6e-37 126.5 12.0 9.6e-37 126.5 12.0 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ninjurin PF04923.12 gi|389848490|ref|YP_006350728.1| - 1.9 8.5 4.9 0.96 9.4 0.7 2.5 2 1 0 2 2 2 0 Ninjurin BPD_transp_1 PF00528.22 gi|389848491|ref|YP_006350729.1| - 7.7e-26 91.0 9.1 7.7e-26 91.0 9.1 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389848491|ref|YP_006350729.1| - 5.1e-15 55.2 0.1 5.1e-15 55.2 0.1 2.7 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF3927 PF13064.6 gi|389848491|ref|YP_006350729.1| - 1.1 9.3 4.5 0.37 10.8 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3927) E1-E2_ATPase PF00122.20 gi|389848491|ref|YP_006350729.1| - 1.8 8.0 5.3 3.3 7.2 2.8 2.4 2 1 0 2 2 2 0 E1-E2 ATPase Ctr PF04145.15 gi|389848491|ref|YP_006350729.1| - 7.8 7.1 6.4 1.8 9.2 0.3 2.6 2 1 1 3 3 3 0 Ctr copper transporter family ABC_tran PF00005.27 gi|389848492|ref|YP_006350730.1| - 2.2e-27 96.2 0.0 3.1e-27 95.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848492|ref|YP_006350730.1| - 2.5e-21 75.9 0.2 4.6e-21 75.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|389848492|ref|YP_006350730.1| - 1e-05 25.8 0.3 0.029 14.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|389848492|ref|YP_006350730.1| - 0.00044 19.8 0.6 0.008 15.6 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|389848492|ref|YP_006350730.1| - 0.0063 16.2 0.0 0.0093 15.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|389848492|ref|YP_006350730.1| - 0.011 15.3 0.0 0.032 13.7 0.1 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF87 PF01935.17 gi|389848492|ref|YP_006350730.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|389848492|ref|YP_006350730.1| - 0.013 15.4 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|389848492|ref|YP_006350730.1| - 0.014 15.3 0.1 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.6 gi|389848492|ref|YP_006350730.1| - 0.016 15.6 1.7 0.076 13.4 0.1 2.3 2 1 0 3 3 3 0 AAA ATPase domain NB-ARC PF00931.22 gi|389848492|ref|YP_006350730.1| - 0.028 13.6 0.0 0.32 10.1 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|389848492|ref|YP_006350730.1| - 0.032 14.7 0.3 0.28 11.6 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|389848492|ref|YP_006350730.1| - 0.032 14.2 0.1 0.6 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|389848492|ref|YP_006350730.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|389848492|ref|YP_006350730.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|389848492|ref|YP_006350730.1| - 0.14 12.5 0.0 0.44 10.9 0.0 1.8 2 0 0 2 2 2 0 RNA helicase PRK PF00485.18 gi|389848492|ref|YP_006350730.1| - 0.18 11.5 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|389848492|ref|YP_006350730.1| - 0.22 11.2 0.6 1.3 8.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|389848492|ref|YP_006350730.1| - 0.25 10.9 0.9 4.4 6.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|389848493|ref|YP_006350731.1| - 2.5e-36 125.2 0.0 3.6e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848493|ref|YP_006350731.1| - 5.8e-18 65.2 1.7 9.8e-18 64.4 1.7 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389848493|ref|YP_006350731.1| - 5.1e-09 36.4 4.1 3.5e-06 27.0 0.4 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848493|ref|YP_006350731.1| - 3e-07 30.1 0.0 5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389848493|ref|YP_006350731.1| - 9e-05 22.9 0.5 0.00028 21.3 0.5 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389848493|ref|YP_006350731.1| - 0.00038 20.8 0.5 0.002 18.4 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389848493|ref|YP_006350731.1| - 0.00056 19.6 0.6 0.0011 18.6 0.6 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|389848493|ref|YP_006350731.1| - 0.0032 17.9 0.0 0.085 13.3 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|389848493|ref|YP_006350731.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|389848493|ref|YP_006350731.1| - 0.016 14.8 0.3 0.11 12.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain DUF3645 PF12359.8 gi|389848493|ref|YP_006350731.1| - 0.023 14.0 0.1 0.06 12.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) AAA_5 PF07728.14 gi|389848493|ref|YP_006350731.1| - 0.024 14.6 0.3 0.19 11.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|389848493|ref|YP_006350731.1| - 0.03 13.6 0.1 0.072 12.4 0.1 1.6 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.17 gi|389848493|ref|YP_006350731.1| - 0.041 13.6 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|389848493|ref|YP_006350731.1| - 0.053 13.2 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|389848493|ref|YP_006350731.1| - 0.088 12.5 0.7 0.54 9.9 0.1 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|389848493|ref|YP_006350731.1| - 0.18 12.3 0.0 0.21 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|389848493|ref|YP_006350731.1| - 0.19 12.0 0.1 2.5 8.4 0.1 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|389848493|ref|YP_006350731.1| - 0.2 11.6 0.8 0.39 10.6 0.8 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|389848493|ref|YP_006350731.1| - 0.24 11.5 0.9 0.49 10.5 0.9 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain TniB PF05621.11 gi|389848493|ref|YP_006350731.1| - 0.24 10.8 0.4 26 4.2 0.0 2.7 2 1 1 3 3 3 0 Bacterial TniB protein AAA_33 PF13671.6 gi|389848493|ref|YP_006350731.1| - 0.54 10.4 2.8 0.66 10.1 0.5 2.1 2 1 0 2 2 2 0 AAA domain DUF917 PF06032.12 gi|389848494|ref|YP_006350732.1| - 1.8e-132 441.5 1.1 2e-132 441.3 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Hydant_A_N PF05378.13 gi|389848495|ref|YP_006350733.1| - 2.3e-43 148.0 5.6 6e-41 140.1 0.5 2.6 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region Hydantoinase_A PF01968.18 gi|389848495|ref|YP_006350733.1| - 2.1e-34 119.2 17.6 1.1e-33 116.7 6.6 3.1 2 1 1 3 3 3 3 Hydantoinase/oxoprolinase MutL PF13941.6 gi|389848495|ref|YP_006350733.1| - 2.2e-08 33.1 5.0 0.00027 19.7 0.1 3.2 3 0 0 3 3 3 2 MutL protein BcrAD_BadFG PF01869.20 gi|389848495|ref|YP_006350733.1| - 5.1e-05 22.9 1.0 5.1e-05 22.9 1.0 2.4 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.11 gi|389848495|ref|YP_006350733.1| - 0.00041 19.7 2.7 0.034 13.4 0.0 2.6 3 0 0 3 3 3 2 StbA protein ROK PF00480.20 gi|389848495|ref|YP_006350733.1| - 0.0041 16.6 0.1 0.019 14.4 0.1 2.2 1 0 0 1 1 1 1 ROK family DEDD_Tnp_IS110 PF01548.17 gi|389848495|ref|YP_006350733.1| - 0.13 12.1 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 Transposase Actin PF00022.19 gi|389848495|ref|YP_006350733.1| - 0.16 10.5 0.3 0.31 9.6 0.3 1.4 1 0 0 1 1 1 0 Actin FtsA PF14450.6 gi|389848495|ref|YP_006350733.1| - 0.39 11.2 8.9 4.7 7.7 1.4 3.5 2 2 0 2 2 2 0 Cell division protein FtsA DUF917 PF06032.12 gi|389848496|ref|YP_006350734.1| - 3.5e-128 427.3 0.1 3.9e-128 427.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) DUF917 PF06032.12 gi|389848497|ref|YP_006350735.1| - 3.3e-122 407.7 0.0 3.8e-122 407.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) HTH_AsnC-type PF13404.6 gi|389848498|ref|YP_006350736.1| - 1.1e-13 50.8 0.7 1.9e-13 50.0 0.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389848498|ref|YP_006350736.1| - 1.1e-12 47.3 0.6 2.4e-12 46.2 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389848498|ref|YP_006350736.1| - 0.00011 22.1 0.2 0.00021 21.2 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389848498|ref|YP_006350736.1| - 0.0004 20.4 0.5 0.0016 18.5 0.3 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848498|ref|YP_006350736.1| - 0.0018 18.2 0.2 0.0033 17.4 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|389848498|ref|YP_006350736.1| - 0.0061 16.3 0.1 0.013 15.2 0.0 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|389848498|ref|YP_006350736.1| - 0.012 15.7 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389848498|ref|YP_006350736.1| - 0.016 15.0 0.1 0.041 13.8 0.1 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit MarR_2 PF12802.7 gi|389848498|ref|YP_006350736.1| - 0.021 14.7 0.1 0.043 13.7 0.1 1.5 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|389848498|ref|YP_006350736.1| - 0.03 14.2 0.0 0.22 11.5 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_DeoR PF08220.12 gi|389848498|ref|YP_006350736.1| - 0.046 13.5 0.1 0.095 12.5 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|389848498|ref|YP_006350736.1| - 0.051 13.4 0.1 0.09 12.6 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.15 gi|389848498|ref|YP_006350736.1| - 0.059 13.4 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_8 PF02954.19 gi|389848498|ref|YP_006350736.1| - 0.062 13.1 0.6 0.14 11.9 0.6 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family TrmB PF01978.19 gi|389848498|ref|YP_006350736.1| - 0.065 13.1 0.1 0.17 11.8 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1655 PF07868.11 gi|389848498|ref|YP_006350736.1| - 0.084 12.9 0.1 0.21 11.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1655) Put_DNA-bind_N PF06971.13 gi|389848498|ref|YP_006350736.1| - 0.095 12.7 0.0 0.28 11.2 0.0 1.8 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_10 PF04967.12 gi|389848499|ref|YP_006350737.1| - 4.1e-17 61.7 1.3 4.8e-17 61.5 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389848499|ref|YP_006350737.1| - 0.00028 20.5 0.5 0.21 11.3 0.1 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389848499|ref|YP_006350737.1| - 0.0016 17.9 0.3 0.0032 16.9 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|389848499|ref|YP_006350737.1| - 0.0041 17.0 0.0 0.012 15.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|389848499|ref|YP_006350737.1| - 0.0054 16.2 0.3 1.5 8.4 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|389848499|ref|YP_006350737.1| - 0.017 14.9 0.1 0.056 13.2 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|389848499|ref|YP_006350737.1| - 0.035 13.7 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|389848499|ref|YP_006350737.1| - 0.04 14.0 0.2 0.34 11.0 0.1 2.4 2 1 0 2 2 2 0 Sigma-70 region 3 Lon_C PF05362.13 gi|389848499|ref|YP_006350737.1| - 0.081 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Lon protease (S16) C-terminal proteolytic domain HTH_40 PF14493.6 gi|389848499|ref|YP_006350737.1| - 0.098 13.1 0.1 0.2 12.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_transf_21 PF13506.6 gi|389848500|ref|YP_006350738.1| - 3.5e-11 42.9 0.0 5.3e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|389848500|ref|YP_006350738.1| - 4e-07 30.0 0.0 6.3e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389848500|ref|YP_006350738.1| - 0.0066 16.4 0.0 0.009 15.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|389848500|ref|YP_006350738.1| - 0.21 11.5 4.7 0.49 10.3 4.6 1.6 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Abhydrolase_1 PF00561.20 gi|389848502|ref|YP_006350740.1| - 2.6e-19 69.9 0.1 4.4e-16 59.3 0.0 2.2 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389848502|ref|YP_006350740.1| - 3.1e-18 67.2 0.0 5.3e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389848502|ref|YP_006350740.1| - 1.9e-17 63.3 0.0 1.4e-14 53.9 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S28 PF05577.12 gi|389848502|ref|YP_006350740.1| - 0.0022 16.9 0.0 0.0037 16.1 0.0 1.3 1 0 0 1 1 1 1 Serine carboxypeptidase S28 PGAP1 PF07819.13 gi|389848502|ref|YP_006350740.1| - 0.02 14.6 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein Ser_hydrolase PF06821.13 gi|389848502|ref|YP_006350740.1| - 0.023 14.5 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase DUF1749 PF08538.10 gi|389848502|ref|YP_006350740.1| - 0.034 13.2 0.0 0.13 11.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) Esterase PF00756.20 gi|389848502|ref|YP_006350740.1| - 0.17 11.5 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase BAAT_C PF08840.11 gi|389848502|ref|YP_006350740.1| - 0.22 11.4 0.0 2.3 8.1 0.0 2.0 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Glyco_hydro_31 PF01055.26 gi|389848503|ref|YP_006350741.1| - 8.8e-139 463.5 3.6 1.2e-138 463.0 3.6 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|389848503|ref|YP_006350741.1| - 6.6e-17 61.6 3.1 1.9e-16 60.1 1.9 2.6 2 0 0 2 2 2 1 Galactose mutarotase-like DUF4968 PF16338.5 gi|389848503|ref|YP_006350741.1| - 8.7e-12 45.2 0.0 2.9e-11 43.5 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4968) DUF5110 PF17137.4 gi|389848503|ref|YP_006350741.1| - 6.1e-11 42.4 3.5 2.1e-10 40.7 3.5 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5110) TAT_signal PF10518.9 gi|389848503|ref|YP_006350741.1| - 0.26 11.2 4.2 0.4 10.6 4.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ATC_hydrolase PF14196.6 gi|389848504|ref|YP_006350742.1| - 2e-14 54.6 0.1 2.6e-14 54.2 0.1 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase HTH_10 PF04967.12 gi|389848506|ref|YP_006350744.1| - 2.2e-13 49.8 0.1 3.8e-13 49.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|389848506|ref|YP_006350744.1| - 0.00091 18.7 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|389848506|ref|YP_006350744.1| - 0.0072 15.8 0.0 0.019 14.4 0.0 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|389848506|ref|YP_006350744.1| - 0.014 15.1 0.1 0.028 14.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HrcA_DNA-bdg PF03444.15 gi|389848506|ref|YP_006350744.1| - 0.028 14.1 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_AsnC-type PF13404.6 gi|389848506|ref|YP_006350744.1| - 0.043 13.6 0.1 0.08 12.8 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|389848506|ref|YP_006350744.1| - 0.073 13.0 0.1 0.21 11.5 0.1 1.8 1 1 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|389848506|ref|YP_006350744.1| - 0.1 12.4 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|389848508|ref|YP_006350746.1| - 1.1e-16 60.5 0.5 1.3e-16 60.3 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389848508|ref|YP_006350746.1| - 0.00013 22.4 0.0 0.00014 22.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389848508|ref|YP_006350746.1| - 0.0013 18.6 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|389848508|ref|YP_006350746.1| - 0.0015 18.5 0.0 0.0024 17.8 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|389848508|ref|YP_006350746.1| - 0.013 15.7 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIB PF00382.19 gi|389848509|ref|YP_006350747.1| - 1.7e-21 76.0 1.3 4.7e-12 45.8 0.3 2.1 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.19 gi|389848509|ref|YP_006350747.1| - 0.002 18.2 0.1 0.058 13.5 0.0 2.0 2 0 0 2 2 2 1 Cyclin, C-terminal domain HTH_24 PF13412.6 gi|389848509|ref|YP_006350747.1| - 0.03 13.9 0.0 0.085 12.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sortilin-Vps10 PF15902.5 gi|389848511|ref|YP_006350749.1| - 1.1e-13 50.8 0.0 2.4e-05 23.4 0.0 3.2 1 1 2 3 3 3 3 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|389848511|ref|YP_006350749.1| - 5.9e-10 37.6 11.0 0.27 11.4 0.1 6.0 5 0 0 5 5 5 4 BNR/Asp-box repeat BNR_2 PF13088.6 gi|389848511|ref|YP_006350749.1| - 2.9e-06 26.8 2.0 0.24 10.7 1.1 3.5 1 1 2 3 3 3 2 BNR repeat-like domain PSII_BNR PF14870.6 gi|389848511|ref|YP_006350749.1| - 1.2e-05 24.7 0.9 5.5 6.1 0.0 4.1 2 1 1 4 4 4 3 Photosynthesis system II assembly factor YCF48 DUF4185 PF13810.6 gi|389848511|ref|YP_006350749.1| - 4.1e-05 23.0 2.6 1.5 8.0 0.1 4.2 1 1 2 4 4 4 3 Domain of unknown function (DUF4185) PQQ_3 PF13570.6 gi|389848511|ref|YP_006350749.1| - 0.0009 19.7 0.5 2.7 8.6 0.0 3.6 3 1 0 3 3 3 2 PQQ-like domain BNR_6 PF15899.5 gi|389848511|ref|YP_006350749.1| - 0.009 16.0 6.2 0.054 13.6 0.0 4.4 5 0 0 5 5 5 1 BNR-Asp box repeat SPASM PF13186.6 gi|389848511|ref|YP_006350749.1| - 0.026 15.0 0.0 0.85 10.2 0.0 2.8 3 0 0 3 3 3 0 Iron-sulfur cluster-binding domain BNR_3 PF13859.6 gi|389848511|ref|YP_006350749.1| - 0.28 10.5 3.4 2.3 7.4 0.1 3.2 3 1 0 4 4 4 0 BNR repeat-like domain DUF4440 PF14534.6 gi|389848512|ref|YP_006350750.1| - 5.2e-09 36.5 0.2 6.9e-09 36.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 gi|389848512|ref|YP_006350750.1| - 1.4e-08 35.3 0.4 2e-08 34.8 0.4 1.3 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|389848512|ref|YP_006350750.1| - 5.7e-06 26.5 0.4 8.1e-06 26.0 0.4 1.3 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 gi|389848512|ref|YP_006350750.1| - 7.4e-05 23.0 0.2 0.00014 22.1 0.2 1.4 1 1 0 1 1 1 1 SnoaL-like domain CaMKII_AD PF08332.10 gi|389848512|ref|YP_006350750.1| - 0.00057 20.0 0.1 0.00079 19.6 0.1 1.1 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain DUF1348 PF07080.11 gi|389848512|ref|YP_006350750.1| - 0.018 14.9 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) PEP-utilisers_N PF05524.13 gi|389848512|ref|YP_006350750.1| - 0.022 14.9 0.5 0.047 13.8 0.3 1.6 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal SH3_1 PF00018.28 gi|389848512|ref|YP_006350750.1| - 0.024 14.3 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 SH3 domain SRP68 PF16969.5 gi|389848512|ref|YP_006350750.1| - 0.057 12.4 0.0 0.057 12.4 0.0 1.1 1 0 0 1 1 1 0 RNA-binding signal recognition particle 68 NTF2 PF02136.20 gi|389848512|ref|YP_006350750.1| - 0.12 13.0 0.0 0.25 11.9 0.0 1.6 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Lumazine_bd_2 PF12893.7 gi|389848512|ref|YP_006350750.1| - 0.19 12.4 1.3 7.5 7.3 1.3 2.4 1 1 0 1 1 1 0 Putative lumazine-binding zf-AN1 PF01428.16 gi|389848513|ref|YP_006350751.1| - 0.038 14.1 1.9 0.038 14.1 1.9 1.5 2 0 0 2 2 2 0 AN1-like Zinc finger ODV-E18 PF10717.9 gi|389848514|ref|YP_006350752.1| - 0.1 12.5 0.1 0.1 12.5 0.1 1.6 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Polbeta PF18765.1 gi|389848515|ref|YP_006350753.1| - 4e-10 39.6 0.0 5.8e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|389848515|ref|YP_006350753.1| - 0.00026 21.2 0.1 0.0004 20.6 0.1 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain HEAT_2 PF13646.6 gi|389848517|ref|YP_006350755.1| - 7.2e-30 103.2 52.1 5.1e-09 36.4 4.3 8.4 2 2 7 9 9 9 7 HEAT repeats Adaptin_N PF01602.20 gi|389848517|ref|YP_006350755.1| - 6.9e-21 74.4 0.0 0.0001 21.0 0.0 5.5 1 1 2 5 5 5 4 Adaptin N terminal region HEAT PF02985.22 gi|389848517|ref|YP_006350755.1| - 1.1e-20 71.9 16.9 0.00024 21.1 0.1 9.8 11 0 0 11 11 10 4 HEAT repeat Cnd1 PF12717.7 gi|389848517|ref|YP_006350755.1| - 5.2e-20 72.1 0.2 0.0023 18.0 0.1 5.4 3 1 2 5 5 5 4 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|389848517|ref|YP_006350755.1| - 1.5e-18 66.9 45.1 7.9e-06 26.3 2.7 11.1 6 4 8 14 14 14 7 HEAT-like repeat DNA_alkylation PF08713.11 gi|389848517|ref|YP_006350755.1| - 1e-05 25.4 0.8 1.6 8.4 0.1 4.2 3 1 1 4 4 4 2 DNA alkylation repair enzyme HEAT_PBS PF03130.16 gi|389848517|ref|YP_006350755.1| - 1.4e-05 25.3 52.6 0.05 14.3 1.0 11.2 14 0 0 14 14 8 4 PBS lyase HEAT-like repeat Vac14_Fab1_bd PF12755.7 gi|389848517|ref|YP_006350755.1| - 0.00056 20.4 0.1 9.2 6.9 0.0 4.3 4 1 2 6 6 4 0 Vacuolar 14 Fab1-binding region Arm PF00514.23 gi|389848517|ref|YP_006350755.1| - 0.0033 17.4 9.7 2.4 8.3 0.0 6.9 8 0 0 8 8 6 1 Armadillo/beta-catenin-like repeat CDC37_N PF03234.14 gi|389848517|ref|YP_006350755.1| - 0.0058 17.5 0.0 0.019 15.8 0.0 1.9 1 0 0 1 1 1 1 Cdc37 N terminal kinase binding Ecm29 PF13001.7 gi|389848517|ref|YP_006350755.1| - 0.006 15.3 0.0 17 3.9 0.0 4.2 4 1 0 4 4 4 0 Proteasome stabiliser MMS19_N PF14500.6 gi|389848517|ref|YP_006350755.1| - 0.0095 15.5 3.1 1.5 8.3 0.2 4.0 3 2 1 4 4 4 1 Dos2-interacting transcription regulator of RNA-Pol-II DUF3385 PF11865.8 gi|389848517|ref|YP_006350755.1| - 0.018 14.9 0.2 40 4.1 0.0 4.3 3 2 1 4 4 4 0 Domain of unknown function (DUF3385) dsDNA_bind PF01984.20 gi|389848517|ref|YP_006350755.1| - 0.02 15.1 2.4 38 4.6 0.0 5.5 5 2 1 7 7 7 0 Double-stranded DNA-binding domain TIP120 PF08623.10 gi|389848517|ref|YP_006350755.1| - 0.03 14.1 0.2 9.5 6.0 0.0 3.3 3 1 0 3 3 3 0 TATA-binding protein interacting (TIP20) ImpA_N PF06812.12 gi|389848517|ref|YP_006350755.1| - 0.04 14.0 0.1 0.64 10.1 0.1 2.8 3 0 0 3 3 2 0 ImpA, N-terminal, type VI secretion system DUF5578 PF17741.1 gi|389848517|ref|YP_006350755.1| - 0.056 12.8 0.0 4.4 6.6 0.0 3.2 3 1 0 3 3 3 0 Family of unknown function (DUF5578) MMS19_C PF12460.8 gi|389848517|ref|YP_006350755.1| - 0.08 12.0 0.4 8.8 5.3 0.3 2.6 2 1 0 2 2 2 0 RNAPII transcription regulator C-terminal Cohesin_HEAT PF12765.7 gi|389848517|ref|YP_006350755.1| - 0.097 13.0 8.8 0.76 10.1 0.2 4.7 4 1 0 4 4 4 0 HEAT repeat associated with sister chromatid cohesion API5 PF05918.11 gi|389848517|ref|YP_006350755.1| - 0.19 10.5 7.0 6.7 5.4 0.1 4.3 3 2 1 5 5 5 0 Apoptosis inhibitory protein 5 (API5) DUF4042 PF13251.6 gi|389848517|ref|YP_006350755.1| - 0.33 10.6 1.0 36 4.0 0.1 3.7 2 1 2 4 4 4 0 Domain of unknown function (DUF4042) FdhE PF04216.12 gi|389848517|ref|YP_006350755.1| - 0.77 9.6 5.7 1.5 8.7 0.6 2.9 3 0 0 3 3 3 0 Protein involved in formate dehydrogenase formation EF-hand_9 PF14658.6 gi|389848517|ref|YP_006350755.1| - 3.1 8.2 5.2 6.1 7.2 0.2 3.5 3 1 1 4 4 4 0 EF-hand domain DUF3592 PF12158.8 gi|389848519|ref|YP_006350757.1| - 1.8e-14 54.0 0.0 8.8e-14 51.8 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) GIDE PF12483.8 gi|389848519|ref|YP_006350757.1| - 7.6e-06 25.4 0.0 2.8e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 E3 Ubiquitin ligase zinc_ribbon_5 PF13719.6 gi|389848519|ref|YP_006350757.1| - 0.078 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Imm5 PF14423.6 gi|389848521|ref|YP_006350759.1| - 3e-28 99.3 0.0 4.4e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 Immunity protein Imm5 GIDE PF12483.8 gi|389848523|ref|YP_006350761.1| - 0.0035 16.7 0.0 0.029 13.7 0.0 2.1 2 0 0 2 2 2 1 E3 Ubiquitin ligase HTH_5 PF01022.20 gi|389848525|ref|YP_006350763.1| - 9e-09 35.1 0.4 1.3e-08 34.6 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|389848525|ref|YP_006350763.1| - 3.7e-08 33.3 0.1 5.1e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389848525|ref|YP_006350763.1| - 4.3e-08 32.9 0.0 6.2e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389848525|ref|YP_006350763.1| - 1.7e-07 30.6 0.1 2.4e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389848525|ref|YP_006350763.1| - 2.1e-07 30.6 0.3 7.5e-07 28.9 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|389848525|ref|YP_006350763.1| - 1.6e-05 24.8 0.3 2.5e-05 24.1 0.3 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|389848525|ref|YP_006350763.1| - 9.4e-05 22.3 0.1 0.00013 21.8 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389848525|ref|YP_006350763.1| - 0.00011 22.0 0.1 0.00014 21.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|389848525|ref|YP_006350763.1| - 0.00032 21.1 0.1 0.0004 20.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|389848525|ref|YP_006350763.1| - 0.00086 19.5 0.1 0.0013 18.9 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|389848525|ref|YP_006350763.1| - 0.0021 18.1 0.0 0.003 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|389848525|ref|YP_006350763.1| - 0.0024 17.5 0.1 0.0035 17.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|389848525|ref|YP_006350763.1| - 0.0034 17.7 0.0 0.0044 17.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|389848525|ref|YP_006350763.1| - 0.0036 17.2 0.1 0.0044 17.0 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|389848525|ref|YP_006350763.1| - 0.0041 17.5 0.1 0.0049 17.2 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_38 PF13936.6 gi|389848525|ref|YP_006350763.1| - 0.0052 16.5 0.0 0.0093 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|389848525|ref|YP_006350763.1| - 0.0089 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TnsD PF15978.5 gi|389848525|ref|YP_006350763.1| - 0.022 13.7 0.1 0.025 13.6 0.1 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D TBPIP PF07106.13 gi|389848525|ref|YP_006350763.1| - 0.029 14.3 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_AsnC-type PF13404.6 gi|389848525|ref|YP_006350763.1| - 0.033 14.0 0.0 0.058 13.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|389848525|ref|YP_006350763.1| - 0.035 13.9 0.1 0.046 13.5 0.1 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_12 PF08461.10 gi|389848525|ref|YP_006350763.1| - 0.039 13.9 0.0 0.065 13.2 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Sigma54_DBD PF04552.13 gi|389848525|ref|YP_006350763.1| - 0.043 13.5 0.1 0.047 13.4 0.1 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain DUF370 PF04025.12 gi|389848525|ref|YP_006350763.1| - 0.057 13.5 0.1 0.072 13.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF370) HTH_36 PF13730.6 gi|389848525|ref|YP_006350763.1| - 0.059 13.3 0.1 0.081 12.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|389848525|ref|YP_006350763.1| - 0.066 13.4 0.1 0.085 13.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2318 PF10080.9 gi|389848526|ref|YP_006350764.1| - 0.0073 16.4 0.1 0.0092 16.1 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.6 gi|389848526|ref|YP_006350764.1| - 0.012 16.1 0.4 0.016 15.7 0.4 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.7 gi|389848526|ref|YP_006350764.1| - 0.017 15.2 0.7 0.027 14.5 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|389848526|ref|YP_006350764.1| - 0.024 14.5 3.0 2.4 8.2 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|389848526|ref|YP_006350764.1| - 0.036 13.8 1.2 4.1 7.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DpnI PF06044.12 gi|389848526|ref|YP_006350764.1| - 0.094 12.3 0.4 0.11 12.1 0.4 1.2 1 0 0 1 1 1 0 Dam-replacing family GFA PF04828.14 gi|389848526|ref|YP_006350764.1| - 0.099 13.0 1.6 2.4 8.5 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.10 gi|389848526|ref|YP_006350764.1| - 0.1 12.8 1.0 17 5.6 0.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|389848526|ref|YP_006350764.1| - 4.7 7.3 8.5 0.9 9.6 0.5 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|389848528|ref|YP_006350766.1| - 0.005 16.9 1.7 1.1 9.5 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|389848528|ref|YP_006350766.1| - 0.0077 16.1 0.2 0.0099 15.8 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|389848528|ref|YP_006350766.1| - 0.022 14.6 3.7 0.023 14.5 0.2 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|389848528|ref|YP_006350766.1| - 0.023 14.2 1.0 1.9 8.1 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|389848528|ref|YP_006350766.1| - 0.031 14.0 0.8 0.96 9.2 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.7 gi|389848528|ref|YP_006350766.1| - 0.031 14.7 1.5 3.3 8.2 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Opy2 PF09463.10 gi|389848528|ref|YP_006350766.1| - 0.055 13.8 3.4 0.22 11.9 0.6 2.1 2 0 0 2 2 2 0 Opy2 protein zf_C2H2_10 PF18414.1 gi|389848528|ref|YP_006350766.1| - 0.088 12.4 6.8 0.55 9.8 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Zn_ribbon_SprT PF17283.2 gi|389848528|ref|YP_006350766.1| - 0.12 12.3 3.7 0.18 11.7 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|389848528|ref|YP_006350766.1| - 0.12 12.5 2.3 0.24 11.5 2.3 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.13 gi|389848528|ref|YP_006350766.1| - 0.17 11.7 4.9 0.63 9.8 4.9 1.8 1 1 0 1 1 1 0 InsA N-terminal domain HypA PF01155.19 gi|389848528|ref|YP_006350766.1| - 0.19 11.8 0.6 9.8 6.2 0.1 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|389848528|ref|YP_006350766.1| - 0.45 11.0 1.9 14 6.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Rubredoxin_2 PF18073.1 gi|389848528|ref|YP_006350766.1| - 0.65 9.8 4.7 0.8 9.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-tcix PF14952.6 gi|389848528|ref|YP_006350766.1| - 0.73 9.5 2.7 1 9.0 0.0 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF35_N PF12172.8 gi|389848528|ref|YP_006350766.1| - 2.8 7.9 7.9 1.9 8.5 1.2 2.3 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.9 gi|389848528|ref|YP_006350766.1| - 4.2 7.5 10.0 1.6 8.9 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNase_II_C_S1 PF18614.1 gi|389848529|ref|YP_006350767.1| - 0.034 14.1 0.1 0.067 13.2 0.1 1.5 1 0 0 1 1 1 0 RNase II-type exonuclease C-terminal S1 domain Frankia_peptide PF14407.6 gi|389848532|ref|YP_006350770.1| - 0.18 11.8 2.3 1.9 8.6 0.3 2.2 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. MgtE PF01769.16 gi|389848534|ref|YP_006350772.1| - 6.6e-27 94.3 8.6 1.3e-26 93.4 8.6 1.5 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.17 gi|389848534|ref|YP_006350772.1| - 3.5e-14 53.2 0.2 1.3e-13 51.4 0.1 2.0 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.28 gi|389848534|ref|YP_006350772.1| - 1.9e-10 41.1 2.0 0.00021 21.7 0.1 3.3 3 0 0 3 3 3 2 CBS domain TF_Zn_Ribbon PF08271.12 gi|389848535|ref|YP_006350773.1| - 0.00035 20.0 0.6 0.13 11.8 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|389848535|ref|YP_006350773.1| - 0.00087 19.3 0.2 0.0012 18.8 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.15 gi|389848535|ref|YP_006350773.1| - 0.0034 16.9 0.6 0.54 9.9 0.0 2.2 2 0 0 2 2 2 1 RecR protein zf-trcl PF13451.6 gi|389848535|ref|YP_006350773.1| - 0.0043 16.9 1.6 0.069 13.0 0.1 2.2 2 0 0 2 2 2 1 Probable zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|389848535|ref|YP_006350773.1| - 0.01 15.6 1.9 0.46 10.3 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO YhfH PF14149.6 gi|389848535|ref|YP_006350773.1| - 0.016 15.2 2.0 0.97 9.5 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-IS66 PF13005.7 gi|389848535|ref|YP_006350773.1| - 0.017 15.5 1.0 2.7 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.6 gi|389848535|ref|YP_006350773.1| - 0.018 15.7 1.7 2.2 9.0 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_7 PF02591.15 gi|389848535|ref|YP_006350773.1| - 0.022 15.0 0.4 0.37 11.0 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|389848535|ref|YP_006350773.1| - 0.029 13.8 1.8 2 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|389848535|ref|YP_006350773.1| - 0.04 13.8 0.3 4.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-tcix PF14952.6 gi|389848535|ref|YP_006350773.1| - 0.054 13.1 2.0 0.66 9.6 0.0 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-LITAF-like PF10601.9 gi|389848535|ref|YP_006350773.1| - 0.057 13.7 1.0 6.9 7.0 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain UPF0547 PF10571.9 gi|389848535|ref|YP_006350773.1| - 0.069 13.2 5.3 0.44 10.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 APOC4 PF15119.6 gi|389848535|ref|YP_006350773.1| - 0.086 13.1 0.1 0.15 12.3 0.1 1.4 1 1 0 1 1 1 0 Apolipoprotein C4 CpXC PF14353.6 gi|389848535|ref|YP_006350773.1| - 0.089 12.8 0.9 1.8 8.6 0.9 2.1 1 1 0 1 1 1 0 CpXC protein Ogr_Delta PF04606.12 gi|389848535|ref|YP_006350773.1| - 0.089 12.8 3.8 2 8.5 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger HypA PF01155.19 gi|389848535|ref|YP_006350773.1| - 0.11 12.6 0.3 0.14 12.2 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|389848535|ref|YP_006350773.1| - 0.11 12.6 5.7 1.1 9.4 5.8 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|389848535|ref|YP_006350773.1| - 0.13 12.0 5.3 1.1 9.1 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|389848535|ref|YP_006350773.1| - 0.18 11.5 2.9 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|389848535|ref|YP_006350773.1| - 0.6 9.9 4.9 2.7 7.8 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Na_Ca_ex PF01699.24 gi|389848536|ref|YP_006350774.1| - 1.7e-26 93.0 31.8 1.1e-15 57.9 11.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein CBS PF00571.28 gi|389848537|ref|YP_006350775.1| - 1.2e-35 121.8 10.4 3.8e-11 43.3 0.2 4.4 4 0 0 4 4 4 4 CBS domain HypA PF01155.19 gi|389848538|ref|YP_006350776.1| - 0.025 14.6 6.3 0.81 9.7 0.6 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|389848538|ref|YP_006350776.1| - 0.05 13.3 6.0 0.15 11.8 2.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|389848538|ref|YP_006350776.1| - 0.057 14.2 7.5 0.91 10.3 0.4 2.9 2 1 1 3 3 3 0 zinc-ribbon family DZR PF12773.7 gi|389848538|ref|YP_006350776.1| - 0.28 11.3 8.1 0.65 10.1 0.8 2.5 2 1 0 2 2 2 0 Double zinc ribbon RecR PF02132.15 gi|389848538|ref|YP_006350776.1| - 0.4 10.3 6.0 2 8.1 0.1 2.6 2 1 0 2 2 2 0 RecR protein RNA_POL_M_15KD PF02150.16 gi|389848538|ref|YP_006350776.1| - 0.46 10.4 7.4 12 5.9 0.1 3.7 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit C1_2 PF03107.16 gi|389848538|ref|YP_006350776.1| - 1 9.7 5.3 22 5.5 0.6 3.2 3 0 0 3 3 3 0 C1 domain zf-dskA_traR PF01258.17 gi|389848538|ref|YP_006350776.1| - 1.4 9.0 5.4 0.99 9.4 1.2 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger C1_1 PF00130.22 gi|389848538|ref|YP_006350776.1| - 1.9 8.4 7.1 5.8 6.9 0.9 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) UPF0547 PF10571.9 gi|389848538|ref|YP_006350776.1| - 2.2 8.5 6.9 3.4 7.8 3.1 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FYVE PF01363.21 gi|389848538|ref|YP_006350776.1| - 3.5 7.8 9.6 1.9 8.7 0.5 2.4 2 0 0 2 2 2 0 FYVE zinc finger zf-ribbon_3 PF13248.6 gi|389848538|ref|YP_006350776.1| - 4.2 6.9 8.4 0.78 9.2 3.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain PLATZ PF04640.14 gi|389848538|ref|YP_006350776.1| - 7 7.3 7.4 14 6.4 1.3 2.5 3 0 0 3 3 2 0 PLATZ transcription factor HTH_20 PF12840.7 gi|389848540|ref|YP_006350778.1| - 0.00011 22.2 0.0 0.0003 20.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|389848540|ref|YP_006350778.1| - 0.016 14.7 0.0 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389848540|ref|YP_006350778.1| - 0.034 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|389848540|ref|YP_006350778.1| - 0.041 13.7 0.0 2 8.3 0.0 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|389848540|ref|YP_006350778.1| - 0.076 12.8 0.0 0.37 10.6 0.0 2.2 2 1 1 3 3 3 0 LexA DNA binding domain Dimerisation2 PF16864.5 gi|389848540|ref|YP_006350778.1| - 0.079 12.9 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain Phage-tail_1 PF09097.10 gi|389848540|ref|YP_006350778.1| - 0.084 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Baseplate structural protein, domain 1 NapD PF03927.13 gi|389848540|ref|YP_006350778.1| - 0.11 12.5 0.3 0.28 11.3 0.3 1.7 1 0 0 1 1 1 0 NapD protein HTH_5 PF01022.20 gi|389848540|ref|YP_006350778.1| - 0.17 11.7 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MatP_C PF17414.2 gi|389848541|ref|YP_006350779.1| - 0.093 12.9 0.1 0.1 12.8 0.1 1.2 1 0 0 1 1 1 0 MatP C-terminal ribbon-helix-helix domain TFIIB PF00382.19 gi|389848542|ref|YP_006350780.1| - 1.9e-28 98.3 4.7 1.4e-14 53.9 0.5 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|389848542|ref|YP_006350780.1| - 3.9e-12 45.5 2.8 7.5e-12 44.6 2.8 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_24 PF13412.6 gi|389848542|ref|YP_006350780.1| - 0.045 13.3 0.1 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RB_B PF01857.20 gi|389848542|ref|YP_006350780.1| - 0.051 13.6 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain TackOD1 PF18551.1 gi|389848542|ref|YP_006350780.1| - 0.054 13.2 0.3 0.1 12.3 0.3 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 HTH_AsnC-type PF13404.6 gi|389848542|ref|YP_006350780.1| - 0.36 10.7 3.6 0.41 10.5 0.2 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain zf-Mss51 PF13824.6 gi|389848542|ref|YP_006350780.1| - 0.71 10.0 3.8 1.1 9.4 0.8 2.4 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TFIIB_C_1 PF18542.1 gi|389848542|ref|YP_006350780.1| - 0.91 9.6 5.4 0.54 10.3 0.2 2.7 2 1 0 2 2 2 0 Transcription factor IIB C-terminal module 1 Zn-ribbon_8 PF09723.10 gi|389848542|ref|YP_006350780.1| - 2.5 8.3 5.3 5.4 7.2 1.0 2.5 1 1 2 3 3 3 0 Zinc ribbon domain TraB PF01963.17 gi|389848543|ref|YP_006350781.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 TraB family HEM4 PF02602.15 gi|389848543|ref|YP_006350781.1| - 0.017 14.5 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD FlaC_arch PF05377.11 gi|389848544|ref|YP_006350782.1| - 0.0037 17.6 0.5 0.0073 16.7 0.4 1.6 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) CLZ PF16526.5 gi|389848544|ref|YP_006350782.1| - 0.0042 17.4 0.6 0.0045 17.3 0.6 1.1 1 0 0 1 1 1 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HSBP1 PF06825.12 gi|389848544|ref|YP_006350782.1| - 0.0048 16.7 0.0 0.0066 16.3 0.0 1.3 1 0 0 1 1 1 1 Heat shock factor binding protein 1 Tropomyosin_1 PF12718.7 gi|389848544|ref|YP_006350782.1| - 0.013 15.6 0.9 0.015 15.5 0.9 1.1 1 0 0 1 1 1 0 Tropomyosin like bZIP_1 PF00170.21 gi|389848544|ref|YP_006350782.1| - 0.019 15.0 0.5 0.027 14.5 0.5 1.2 1 0 0 1 1 1 0 bZIP transcription factor DUF1515 PF07439.11 gi|389848544|ref|YP_006350782.1| - 0.039 14.0 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF4988 PF16378.5 gi|389848544|ref|YP_006350782.1| - 0.042 13.5 0.2 0.061 13.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function TRPM_tetra PF16519.5 gi|389848544|ref|YP_006350782.1| - 0.059 13.5 0.3 0.083 13.0 0.3 1.2 1 0 0 1 1 1 0 Tetramerisation domain of TRPM PspB PF06667.12 gi|389848544|ref|YP_006350782.1| - 0.12 12.4 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Phage shock protein B CorA PF01544.18 gi|389848544|ref|YP_006350782.1| - 0.12 11.6 0.3 0.13 11.5 0.3 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein AAA_16 PF13191.6 gi|389848545|ref|YP_006350783.1| - 0.037 14.4 0.8 6.6 7.1 0.0 3.9 2 1 1 3 3 3 0 AAA ATPase domain KAP_NTPase PF07693.14 gi|389848545|ref|YP_006350783.1| - 0.11 11.7 3.1 2.2 7.4 1.3 2.4 1 1 1 2 2 2 0 KAP family P-loop domain DUF1798 PF08807.10 gi|389848546|ref|YP_006350784.1| - 0.095 12.8 0.1 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial domain of unknown function (DUF1798) HNH_repeat PF18780.1 gi|389848547|ref|YP_006350785.1| - 4.2e-13 48.8 4.3 0.00017 21.3 0.5 3.6 3 0 0 3 3 3 3 Homing endonuclease repeat zf-C2H2_6 PF13912.6 gi|389848547|ref|YP_006350785.1| - 3.3e-06 26.9 11.1 9.6e-05 22.3 0.1 3.2 3 0 0 3 3 2 2 C2H2-type zinc finger zf-C2H2_4 PF13894.6 gi|389848547|ref|YP_006350785.1| - 3.5e-06 27.4 0.1 0.097 13.6 0.0 3.0 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|389848547|ref|YP_006350785.1| - 2.2e-05 24.6 0.1 0.26 11.8 0.0 2.9 2 0 0 2 2 2 2 Zinc finger, C2H2 type HNH_2 PF13391.6 gi|389848547|ref|YP_006350785.1| - 0.00047 20.2 2.5 0.0013 18.8 2.5 1.8 1 1 0 1 1 1 1 HNH endonuclease Zn-ribbon_8 PF09723.10 gi|389848547|ref|YP_006350785.1| - 0.0021 18.1 2.5 0.77 9.9 0.3 3.1 2 0 0 2 2 2 2 Zinc ribbon domain zf-met PF12874.7 gi|389848547|ref|YP_006350785.1| - 0.0023 18.3 0.2 0.041 14.3 0.0 2.5 2 0 0 2 2 2 1 Zinc-finger of C2H2 type HNH PF01844.23 gi|389848547|ref|YP_006350785.1| - 0.0056 16.8 9.6 0.0063 16.7 3.0 3.2 3 0 0 3 3 3 1 HNH endonuclease zf-C2H2_jaz PF12171.8 gi|389848547|ref|YP_006350785.1| - 0.0098 16.2 0.0 2.8 8.3 0.0 2.5 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding Sigma70_r3 PF04539.16 gi|389848547|ref|YP_006350785.1| - 0.018 15.1 1.9 38 4.5 0.1 3.2 3 0 0 3 3 3 0 Sigma-70 region 3 LexA_DNA_bind PF01726.16 gi|389848547|ref|YP_006350785.1| - 0.032 14.0 0.0 3.9 7.3 0.0 3.0 3 0 0 3 3 3 0 LexA DNA binding domain tRNA_anti-codon PF01336.25 gi|389848548|ref|YP_006350786.1| - 0.0003 20.7 0.0 0.00066 19.6 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain BRF1 PF07741.13 gi|389848548|ref|YP_006350786.1| - 2.1 8.7 4.7 3 8.3 0.0 2.3 2 0 0 2 2 2 0 Brf1-like TBP-binding domain eRF1_2 PF03464.15 gi|389848549|ref|YP_006350787.1| - 2.3e-30 105.6 0.0 3.7e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|389848549|ref|YP_006350787.1| - 8.9e-21 74.5 9.3 3.2e-20 72.7 4.7 2.5 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|389848549|ref|YP_006350787.1| - 2.1e-17 63.7 3.5 5.7e-17 62.3 1.3 2.7 3 0 0 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|389848549|ref|YP_006350787.1| - 1.2e-16 61.2 0.0 1.3e-15 57.8 0.0 2.4 1 1 0 1 1 1 1 eRF1 domain 3 baeRF_family2 PF18844.1 gi|389848549|ref|YP_006350787.1| - 0.007 16.4 2.3 0.007 16.4 2.3 2.0 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 eRF1_1 PF03463.15 gi|389848549|ref|YP_006350787.1| - 0.021 14.8 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 1 baeRF_family12 PF18856.1 gi|389848549|ref|YP_006350787.1| - 0.063 13.9 0.1 0.16 12.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 12 PemK_toxin PF02452.17 gi|389848553|ref|YP_006350791.1| - 7.9e-05 23.0 0.0 9.3e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system MarR_2 PF12802.7 gi|389848554|ref|YP_006350792.1| - 6.1e-07 29.2 0.0 9.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389848554|ref|YP_006350792.1| - 1.6e-05 24.8 0.0 2.3e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|389848554|ref|YP_006350792.1| - 0.00022 21.5 0.0 0.00037 20.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|389848554|ref|YP_006350792.1| - 0.00059 19.7 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389848554|ref|YP_006350792.1| - 0.0013 18.2 0.0 0.0023 17.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|389848554|ref|YP_006350792.1| - 0.0034 17.8 0.1 0.0068 16.9 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|389848554|ref|YP_006350792.1| - 0.0042 17.1 0.2 0.008 16.2 0.1 1.5 2 0 0 2 2 1 1 Winged helix-turn helix HTH_36 PF13730.6 gi|389848554|ref|YP_006350792.1| - 0.0045 16.9 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389848554|ref|YP_006350792.1| - 0.0049 16.8 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|389848554|ref|YP_006350792.1| - 0.0056 16.8 0.0 0.0097 16.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|389848554|ref|YP_006350792.1| - 0.0058 16.7 0.1 0.0072 16.4 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.10 gi|389848554|ref|YP_006350792.1| - 0.006 16.4 0.0 0.0094 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|389848554|ref|YP_006350792.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain DprA_WH PF17782.1 gi|389848554|ref|YP_006350792.1| - 0.023 14.8 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain PaaX PF07848.12 gi|389848554|ref|YP_006350792.1| - 0.044 14.0 0.2 0.11 12.7 0.2 1.7 1 1 0 1 1 1 0 PaaX-like protein HTH_23 PF13384.6 gi|389848554|ref|YP_006350792.1| - 0.045 13.6 0.3 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.20 gi|389848554|ref|YP_006350792.1| - 0.053 13.4 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|389848554|ref|YP_006350792.1| - 0.06 13.5 0.7 0.1 12.8 0.0 1.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|389848554|ref|YP_006350792.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|389848554|ref|YP_006350792.1| - 0.16 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Glyco_tranf_2_4 PF13704.6 gi|389848554|ref|YP_006350792.1| - 4.2 8.0 7.0 1.1 9.8 0.8 2.8 1 1 1 2 2 2 0 Glycosyl transferase family 2 NinF PF05810.12 gi|389848555|ref|YP_006350793.1| - 0.0093 15.8 0.3 0.0093 15.8 0.3 1.6 2 0 0 2 2 2 1 NinF protein zf-RING_10 PF16685.5 gi|389848555|ref|YP_006350793.1| - 0.073 13.2 0.2 0.073 13.2 0.2 2.2 2 1 1 3 3 3 0 zinc RING finger of MSL2 FUR PF01475.19 gi|389848556|ref|YP_006350794.1| - 0.0049 17.0 0.1 0.0066 16.6 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Replic_Relax PF13814.6 gi|389848556|ref|YP_006350794.1| - 0.0078 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_WhiA PF02650.14 gi|389848556|ref|YP_006350794.1| - 0.021 15.1 0.0 0.033 14.5 0.0 1.3 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_Tnp_Tc3_2 PF01498.18 gi|389848556|ref|YP_006350794.1| - 0.022 15.0 0.1 0.04 14.2 0.1 1.4 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.12 gi|389848556|ref|YP_006350794.1| - 0.03 14.3 0.1 0.056 13.4 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_32 PF13565.6 gi|389848556|ref|YP_006350794.1| - 0.041 14.5 0.3 0.11 13.2 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain TatD_DNase PF01026.21 gi|389848556|ref|YP_006350794.1| - 0.054 12.9 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase DUF1056 PF06341.11 gi|389848556|ref|YP_006350794.1| - 1.4 9.3 4.1 2.5 8.5 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1056) DUF4870 PF09685.10 gi|389848557|ref|YP_006350795.1| - 4.8e-07 29.9 3.2 4.8e-07 29.9 3.2 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4870) DUF4293 PF14126.6 gi|389848557|ref|YP_006350795.1| - 0.19 12.0 2.3 0.47 10.7 0.8 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4293) DDE_Tnp_1 PF01609.21 gi|389848561|ref|YP_006350799.1| - 4.3e-10 39.6 0.2 6.6e-10 39.0 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|389848561|ref|YP_006350799.1| - 0.00074 19.8 0.2 0.0028 18.0 0.2 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|389848561|ref|YP_006350799.1| - 0.0022 18.0 0.0 0.0029 17.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_IS240 PF13610.6 gi|389848561|ref|YP_006350799.1| - 0.015 15.5 0.2 0.025 14.8 0.2 1.3 1 1 0 1 1 1 0 DDE domain DDE_Tnp_1_6 PF13751.6 gi|389848561|ref|YP_006350799.1| - 0.099 12.9 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 Transposase DDE domain HTH_20 PF12840.7 gi|389848566|ref|YP_006350804.1| - 1.2e-07 31.7 0.4 1.9e-07 31.0 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|389848566|ref|YP_006350804.1| - 0.00011 22.0 0.1 0.00029 20.6 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|389848566|ref|YP_006350804.1| - 0.00023 21.1 0.0 0.00035 20.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|389848566|ref|YP_006350804.1| - 0.00025 20.5 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|389848566|ref|YP_006350804.1| - 0.0037 17.1 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|389848566|ref|YP_006350804.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|389848566|ref|YP_006350804.1| - 0.027 14.0 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 TrmB PF01978.19 gi|389848566|ref|YP_006350804.1| - 0.043 13.7 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|389848566|ref|YP_006350804.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family Bundlin PF05307.11 gi|389848567|ref|YP_006350805.1| - 0.0062 16.3 0.1 0.01 15.6 0.1 1.3 1 0 0 1 1 1 1 Bundlin PIN PF01850.21 gi|389848569|ref|YP_006350807.1| - 0.0052 17.3 0.3 0.0066 16.9 0.3 1.1 1 0 0 1 1 1 1 PIN domain PPE PF00823.19 gi|389848569|ref|YP_006350807.1| - 0.15 12.2 0.1 0.2 11.8 0.1 1.2 1 0 0 1 1 1 0 PPE family WVELL PF14043.6 gi|389848570|ref|YP_006350808.1| - 0.017 14.9 0.8 0.024 14.5 0.8 1.3 1 0 0 1 1 1 0 WVELL protein TraE PF05309.11 gi|389848570|ref|YP_006350808.1| - 0.17 11.2 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 TraE protein SWIM PF04434.17 gi|389848571|ref|YP_006350809.1| - 0.0016 18.1 1.0 0.0034 17.0 1.0 1.5 1 0 0 1 1 1 1 SWIM zinc finger HTH_IclR PF09339.10 gi|389848573|ref|YP_006350811.1| - 7.4e-06 25.7 0.0 1.7e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389848573|ref|YP_006350811.1| - 0.00016 21.5 0.1 0.00051 19.9 0.0 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|389848573|ref|YP_006350811.1| - 0.00017 21.4 0.0 0.00048 20.0 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389848573|ref|YP_006350811.1| - 0.00055 19.4 0.2 0.0013 18.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389848573|ref|YP_006350811.1| - 0.00065 19.6 0.0 0.0062 16.5 0.0 2.3 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.7 gi|389848573|ref|YP_006350811.1| - 0.0023 18.0 0.6 0.0088 16.1 0.1 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_6 PF01418.17 gi|389848573|ref|YP_006350811.1| - 0.0027 17.6 0.0 0.0073 16.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_28 PF13518.6 gi|389848573|ref|YP_006350811.1| - 0.0044 17.1 0.0 0.016 15.4 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain WYL PF13280.6 gi|389848573|ref|YP_006350811.1| - 0.023 14.8 0.4 0.15 12.1 0.4 2.0 1 1 0 1 1 1 0 WYL domain HTH_23 PF13384.6 gi|389848573|ref|YP_006350811.1| - 0.03 14.1 0.0 0.1 12.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_DeoR PF08220.12 gi|389848573|ref|YP_006350811.1| - 0.082 12.7 0.1 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|389848573|ref|YP_006350811.1| - 0.082 12.9 0.0 0.28 11.2 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|389848573|ref|YP_006350811.1| - 0.09 13.0 0.0 0.25 11.5 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|389848573|ref|YP_006350811.1| - 0.1 12.9 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator GerE PF00196.19 gi|389848573|ref|YP_006350811.1| - 0.13 11.8 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family TcdB_N PF12918.7 gi|389848573|ref|YP_006350811.1| - 0.14 12.5 0.0 0.31 11.4 0.0 1.5 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain TFIIB PF00382.19 gi|389848574|ref|YP_006350812.1| - 0.00032 20.7 0.0 0.00038 20.4 0.0 1.1 1 0 0 1 1 1 1 Transcription factor TFIIB repeat TraE PF05309.11 gi|389848574|ref|YP_006350812.1| - 0.035 13.5 0.0 0.036 13.5 0.0 1.1 1 0 0 1 1 1 0 TraE protein MarR_2 PF12802.7 gi|389848574|ref|YP_006350812.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 MarR family Fic PF02661.18 gi|389848577|ref|YP_006350815.1| - 1.8e-08 35.1 0.0 7.4e-08 33.2 0.0 1.9 1 1 0 1 1 1 1 Fic/DOC family Lactamase_B PF00753.27 gi|389848579|ref|YP_006350817.1| - 7.7e-08 32.6 7.0 1.6e-07 31.5 4.2 2.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|389848579|ref|YP_006350817.1| - 1.5e-06 27.9 2.0 1.9e-06 27.6 0.6 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DDE_Tnp_IS240 PF13610.6 gi|389848580|ref|YP_006350818.1| - 6.4e-31 107.4 0.0 1.1e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389848580|ref|YP_006350818.1| - 4.5e-07 29.5 0.8 8e-07 28.7 0.3 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|389848580|ref|YP_006350818.1| - 0.0059 16.1 0.1 0.014 14.9 0.1 1.6 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.26 gi|389848580|ref|YP_006350818.1| - 0.0067 16.6 0.3 0.024 14.9 0.1 2.0 2 1 0 2 2 2 1 Integrase core domain DUF2384 PF09722.10 gi|389848580|ref|YP_006350818.1| - 0.036 14.1 0.0 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DDE_Tnp_1 PF01609.21 gi|389848580|ref|YP_006350818.1| - 0.36 10.4 2.7 1.3 8.6 1.0 2.1 1 1 1 2 2 2 0 Transposase DDE domain Phage_integrase PF00589.22 gi|389848581|ref|YP_006350819.1| - 1.7e-07 31.2 0.0 3.4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family HTH_23 PF13384.6 gi|389848581|ref|YP_006350819.1| - 0.61 10.0 5.7 17 5.4 0.1 3.7 5 0 0 5 5 5 0 Homeodomain-like domain AAA_22 PF13401.6 gi|389848582|ref|YP_006350820.1| - 3.5e-12 46.8 0.0 1.4e-11 44.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain Cdc6_C PF09079.11 gi|389848582|ref|YP_006350820.1| - 1e-11 44.6 0.0 2.4e-11 43.5 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|389848582|ref|YP_006350820.1| - 1.5e-07 32.0 3.0 1.6e-06 28.6 0.0 2.9 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389848582|ref|YP_006350820.1| - 0.00018 21.9 0.1 0.005 17.3 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.6 gi|389848582|ref|YP_006350820.1| - 0.00021 20.3 0.6 0.084 11.6 0.4 2.3 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|389848582|ref|YP_006350820.1| - 0.00089 19.2 0.0 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|389848582|ref|YP_006350820.1| - 0.008 15.4 0.0 0.015 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|389848582|ref|YP_006350820.1| - 0.0081 15.4 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Dak2 PF02734.17 gi|389848582|ref|YP_006350820.1| - 0.01 15.8 0.8 0.019 14.9 0.8 1.4 1 0 0 1 1 1 0 DAK2 domain TIP49_C PF17856.1 gi|389848582|ref|YP_006350820.1| - 0.017 15.3 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain IstB_IS21 PF01695.17 gi|389848582|ref|YP_006350820.1| - 0.036 13.8 0.2 2.1 8.0 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|389848582|ref|YP_006350820.1| - 0.04 13.4 0.0 0.21 11.1 0.0 2.2 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|389848582|ref|YP_006350820.1| - 0.077 13.2 1.4 0.27 11.4 0.0 2.4 2 1 1 3 3 3 0 AAA domain FlgM PF04316.13 gi|389848582|ref|YP_006350820.1| - 0.12 12.7 4.1 0.27 11.6 0.3 2.7 1 1 1 2 2 2 0 Anti-sigma-28 factor, FlgM RNA_helicase PF00910.22 gi|389848582|ref|YP_006350820.1| - 0.13 12.7 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PCP_red PF08369.10 gi|389848582|ref|YP_006350820.1| - 0.17 12.2 1.0 0.63 10.3 0.6 2.3 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit AAA_18 PF13238.6 gi|389848582|ref|YP_006350820.1| - 0.28 11.7 1.8 0.47 11.0 0.0 2.4 3 0 0 3 3 2 0 AAA domain HIP1_clath_bdg PF16515.5 gi|389848582|ref|YP_006350820.1| - 1.3 9.7 6.7 0.33 11.6 2.4 2.3 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 PQQ_2 PF13360.6 gi|389848583|ref|YP_006350821.1| - 3.5e-31 108.6 9.9 4.1e-29 101.9 3.2 2.7 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|389848583|ref|YP_006350821.1| - 1.5e-20 73.0 18.4 6.8e-05 23.2 0.0 7.5 7 0 0 7 7 7 6 PQQ-like domain PQQ PF01011.21 gi|389848583|ref|YP_006350821.1| - 2.9e-20 71.2 1.7 1.4e-05 24.8 0.0 5.9 5 0 0 5 5 5 4 PQQ enzyme repeat DDE_Tnp_1 PF01609.21 gi|389848584|ref|YP_006350822.1| - 0.00026 20.7 0.1 0.0003 20.5 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|389848584|ref|YP_006350822.1| - 0.0035 15.7 0.0 0.004 15.5 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain group 1 LPD1 PF18796.1 gi|389848584|ref|YP_006350822.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 1 ERO1 PF04137.15 gi|389848584|ref|YP_006350822.1| - 0.026 13.7 0.1 0.03 13.5 0.1 1.1 1 0 0 1 1 1 0 Endoplasmic Reticulum Oxidoreductin 1 (ERO1) HTH_33 PF13592.6 gi|389848585|ref|YP_006350823.1| - 0.0013 18.3 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Cdc6_C PF09079.11 gi|389848588|ref|YP_006350825.1| - 2e-19 69.3 0.3 4.1e-19 68.3 0.3 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389848588|ref|YP_006350825.1| - 9.2e-17 61.6 0.6 1.7e-15 57.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|389848588|ref|YP_006350825.1| - 4e-07 30.5 0.6 1.8e-06 28.4 0.1 2.4 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|389848588|ref|YP_006350825.1| - 5.5e-07 30.1 0.0 5.5e-07 30.1 0.0 2.4 2 2 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|389848588|ref|YP_006350825.1| - 7.5e-05 22.2 0.0 0.00019 20.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial TniB protein DUF87 PF01935.17 gi|389848588|ref|YP_006350825.1| - 0.00021 21.5 1.5 0.00054 20.1 0.1 2.2 2 1 1 3 3 3 1 Helicase HerA, central domain AAA_5 PF07728.14 gi|389848588|ref|YP_006350825.1| - 0.00066 19.7 0.6 0.0098 15.9 0.6 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|389848588|ref|YP_006350825.1| - 0.00073 19.3 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|389848588|ref|YP_006350825.1| - 0.0012 18.7 0.1 0.0034 17.3 0.0 1.7 2 0 0 2 2 2 1 NACHT domain DEAD PF00270.29 gi|389848588|ref|YP_006350825.1| - 0.0026 17.6 1.6 0.8 9.5 0.2 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase PhoH PF02562.16 gi|389848588|ref|YP_006350825.1| - 0.0026 17.2 0.1 0.69 9.3 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_2 PF07724.14 gi|389848588|ref|YP_006350825.1| - 0.0037 17.4 0.0 0.01 16.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) CbiA PF01656.23 gi|389848588|ref|YP_006350825.1| - 0.0074 16.4 0.3 0.029 14.4 0.2 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|389848588|ref|YP_006350825.1| - 0.0088 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|389848588|ref|YP_006350825.1| - 0.009 15.4 0.0 0.014 14.7 0.0 1.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|389848588|ref|YP_006350825.1| - 0.013 15.2 0.1 0.058 13.1 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_32 PF13654.6 gi|389848588|ref|YP_006350825.1| - 0.015 14.1 1.3 0.95 8.2 1.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|389848588|ref|YP_006350825.1| - 0.022 14.0 0.0 0.051 12.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|389848588|ref|YP_006350825.1| - 0.023 15.2 0.5 0.066 13.7 0.5 2.1 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|389848588|ref|YP_006350825.1| - 0.043 14.4 0.0 0.22 12.1 0.0 2.3 1 1 0 1 1 1 0 AAA domain P-II PF00543.22 gi|389848588|ref|YP_006350825.1| - 0.062 13.9 2.1 1.1 9.9 0.0 2.9 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II Microtub_bd PF16796.5 gi|389848588|ref|YP_006350825.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding AAA_7 PF12775.7 gi|389848588|ref|YP_006350825.1| - 0.11 12.1 0.0 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|389848588|ref|YP_006350825.1| - 0.14 12.6 0.3 1.4 9.3 0.1 2.7 2 1 0 2 2 2 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|389848588|ref|YP_006350825.1| - 0.15 12.2 0.2 0.38 10.9 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_31 PF13614.6 gi|389848590|ref|YP_006350827.1| - 1.7e-32 112.7 0.0 2.2e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848590|ref|YP_006350827.1| - 1.2e-12 48.0 0.0 1.8e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|389848590|ref|YP_006350827.1| - 2.6e-10 40.2 0.0 4.9e-10 39.3 0.0 1.4 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|389848590|ref|YP_006350827.1| - 1.9e-08 34.1 0.1 1.6e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|389848590|ref|YP_006350827.1| - 1.9e-07 30.8 0.1 2.9e-06 26.9 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|389848590|ref|YP_006350827.1| - 2.3e-07 30.4 0.2 0.00042 19.7 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|389848590|ref|YP_006350827.1| - 1.6e-05 24.3 0.0 0.00011 21.5 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|389848590|ref|YP_006350827.1| - 0.0029 17.0 0.0 0.016 14.5 0.0 2.0 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|389848590|ref|YP_006350827.1| - 0.0089 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|389848590|ref|YP_006350827.1| - 0.018 14.0 0.0 0.031 13.2 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF1611 PF07755.11 gi|389848590|ref|YP_006350827.1| - 0.2 10.9 0.0 0.38 10.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Spermine_synth PF01564.17 gi|389848592|ref|YP_006350829.1| - 9.9e-15 54.4 0.0 1.5e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain DUF1616 PF07760.11 gi|389848592|ref|YP_006350829.1| - 0.004 16.6 0.1 0.0066 15.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2617 PF10936.8 gi|389848593|ref|YP_006350830.1| - 3e-05 24.2 0.2 4.8e-05 23.5 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF2617 DUF953 PF06110.11 gi|389848594|ref|YP_006350831.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) zinc_ribbon_15 PF17032.5 gi|389848594|ref|YP_006350831.1| - 0.14 13.0 0.1 0.25 12.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family DUF3060 PF11259.8 gi|389848594|ref|YP_006350831.1| - 0.45 10.2 3.3 1 9.1 1.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3060) DUF1610 PF07754.11 gi|389848594|ref|YP_006350831.1| - 0.9 9.6 3.8 4.1 7.4 2.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Pentapeptide_3 PF13576.6 gi|389848596|ref|YP_006350833.1| - 3.7e-50 167.9 98.8 1.1e-09 38.3 8.1 10.3 3 2 5 10 10 10 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|389848596|ref|YP_006350833.1| - 3.9e-10 39.6 5.5 1.2e-09 38.0 1.5 2.4 1 1 1 2 2 2 1 Ion channel Pentapeptide PF00805.22 gi|389848596|ref|YP_006350833.1| - 0.00026 20.5 29.7 0.88 9.3 0.1 11.0 11 2 2 13 13 13 5 Pentapeptide repeats (8 copies) DUF3672 PF12421.8 gi|389848596|ref|YP_006350833.1| - 0.013 15.4 0.1 10 6.0 0.0 3.2 3 1 0 3 3 3 0 Fibronectin type III protein HTH_10 PF04967.12 gi|389848597|ref|YP_006350834.1| - 1.7e-22 79.0 0.0 2.7e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|389848597|ref|YP_006350834.1| - 0.0013 18.2 0.4 0.0056 16.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|389848597|ref|YP_006350834.1| - 0.0038 17.4 0.0 0.0069 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase MarR_2 PF12802.7 gi|389848597|ref|YP_006350834.1| - 0.031 14.2 0.1 0.089 12.7 0.0 1.8 2 0 0 2 2 2 0 MarR family Sigma70_r4_2 PF08281.12 gi|389848597|ref|YP_006350834.1| - 0.033 13.9 0.4 0.44 10.3 0.4 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|389848597|ref|YP_006350834.1| - 0.034 14.1 0.0 0.088 12.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.7 gi|389848597|ref|YP_006350834.1| - 0.078 13.1 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|389848597|ref|YP_006350834.1| - 0.092 12.3 0.3 0.37 10.3 0.2 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Asp_Glu_race PF01177.22 gi|389848598|ref|YP_006350835.1| - 5.3e-54 183.4 0.0 6.1e-54 183.2 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 gi|389848598|ref|YP_006350835.1| - 0.034 13.5 0.1 0.066 12.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase ABC2_membrane_3 PF12698.7 gi|389848600|ref|YP_006350837.1| - 8.9e-05 21.8 10.8 8.9e-05 21.8 10.8 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848600|ref|YP_006350837.1| - 0.00013 21.6 5.3 0.00013 21.6 5.3 3.0 3 1 0 3 3 3 1 ABC-2 family transporter protein ArAE_2_N PF10337.9 gi|389848600|ref|YP_006350837.1| - 1 8.3 4.0 3 6.8 0.2 2.2 2 0 0 2 2 2 0 Putative ER transporter, 6TM, N-terminal ABC_tran PF00005.27 gi|389848601|ref|YP_006350838.1| - 6e-28 98.1 0.0 1.1e-27 97.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848601|ref|YP_006350838.1| - 3.9e-11 43.3 0.1 3e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389848601|ref|YP_006350838.1| - 1.2e-05 25.9 0.0 2.9e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|389848601|ref|YP_006350838.1| - 0.00012 21.8 0.1 0.00023 20.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389848601|ref|YP_006350838.1| - 0.00017 21.1 0.0 0.0081 15.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389848601|ref|YP_006350838.1| - 0.0029 17.4 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848601|ref|YP_006350838.1| - 0.0071 16.3 0.1 0.035 14.0 0.1 2.1 1 1 1 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|389848601|ref|YP_006350838.1| - 0.0088 16.2 0.0 0.033 14.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain MukB PF04310.12 gi|389848601|ref|YP_006350838.1| - 0.027 14.3 0.0 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal AAA_PrkA PF08298.11 gi|389848601|ref|YP_006350838.1| - 0.034 13.1 0.0 0.049 12.5 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_27 PF13514.6 gi|389848601|ref|YP_006350838.1| - 0.037 13.6 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389848601|ref|YP_006350838.1| - 0.054 13.9 0.0 0.1 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|389848601|ref|YP_006350838.1| - 0.068 12.9 0.1 0.18 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|389848602|ref|YP_006350839.1| - 6.7e-32 110.9 0.0 1e-31 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389848602|ref|YP_006350839.1| - 7e-14 51.8 0.3 9.3e-13 48.2 0.1 2.5 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|389848602|ref|YP_006350839.1| - 3.2e-12 47.1 0.2 2.3e-11 44.4 0.1 2.5 2 0 0 2 2 2 1 MalK OB fold domain TOBE PF03459.17 gi|389848602|ref|YP_006350839.1| - 1.4e-06 28.5 0.5 4.2e-06 27.0 0.1 2.1 2 0 0 2 2 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|389848602|ref|YP_006350839.1| - 2.7e-06 27.8 0.1 8.8e-05 23.0 0.1 2.9 3 0 0 3 3 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|389848602|ref|YP_006350839.1| - 3.5e-06 27.1 0.7 0.049 13.4 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|389848602|ref|YP_006350839.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|389848602|ref|YP_006350839.1| - 0.0032 17.9 0.1 0.0055 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848602|ref|YP_006350839.1| - 0.0036 17.2 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|389848602|ref|YP_006350839.1| - 0.0037 17.5 0.2 0.0067 16.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389848602|ref|YP_006350839.1| - 0.017 14.6 0.1 0.19 11.2 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|389848602|ref|YP_006350839.1| - 0.026 14.7 0.1 0.13 12.4 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|389848602|ref|YP_006350839.1| - 0.03 14.6 0.2 0.071 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|389848602|ref|YP_006350839.1| - 0.082 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|389848602|ref|YP_006350839.1| - 0.096 12.4 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|389848602|ref|YP_006350839.1| - 0.13 11.9 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|389848602|ref|YP_006350839.1| - 0.16 11.7 0.3 0.52 10.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|389848603|ref|YP_006350840.1| - 9.3e-17 61.4 16.4 9.3e-17 61.4 16.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848604|ref|YP_006350841.1| - 3e-08 33.6 34.3 1.3e-06 28.3 34.3 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|389848605|ref|YP_006350842.1| - 1.1e-49 169.8 9.4 1.1e-49 169.8 9.4 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848605|ref|YP_006350842.1| - 2.2e-30 106.7 10.3 3.2e-30 106.2 10.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389848605|ref|YP_006350842.1| - 0.00044 20.1 0.1 1 9.1 0.1 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848605|ref|YP_006350842.1| - 0.0023 17.7 0.5 0.0071 16.1 0.5 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_6 PF13343.6 gi|389848605|ref|YP_006350842.1| - 0.004 16.6 0.1 1.5 8.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Helo_like_N PF17111.5 gi|389848605|ref|YP_006350842.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins Peptidase_S66C PF17676.1 gi|389848605|ref|YP_006350842.1| - 0.098 13.2 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain PEP-utilisers_N PF05524.13 gi|389848605|ref|YP_006350842.1| - 0.11 12.6 0.0 4.2 7.6 0.0 2.3 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal G8 PF10162.9 gi|389848608|ref|YP_006350845.1| - 5.5e-27 94.3 0.3 1.1e-26 93.3 0.3 1.5 1 0 0 1 1 1 1 G8 domain Beta_helix PF13229.6 gi|389848608|ref|YP_006350845.1| - 1.2e-09 38.2 13.4 1.7e-06 28.0 9.7 3.8 2 1 0 2 2 2 2 Right handed beta helix region TAT_signal PF10518.9 gi|389848608|ref|YP_006350845.1| - 0.0013 18.4 2.7 0.0026 17.5 2.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence EAR PF07897.11 gi|389848608|ref|YP_006350845.1| - 0.17 11.5 0.6 0.46 10.1 0.3 1.9 2 0 0 2 2 2 0 Ethylene-responsive binding factor-associated repression SPT_ssu-like PF11779.8 gi|389848610|ref|YP_006350847.1| - 3.4 7.4 7.8 2.8 7.6 0.9 2.1 1 1 1 2 2 2 0 Small subunit of serine palmitoyltransferase-like ABC_tran PF00005.27 gi|389848612|ref|YP_006350849.1| - 1.8e-35 122.4 0.0 2.9e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389848612|ref|YP_006350849.1| - 8.1e-13 48.3 0.2 2.8e-12 46.6 0.1 2.0 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|389848612|ref|YP_006350849.1| - 1.2e-08 35.7 0.1 2.5e-07 31.4 0.0 3.1 3 1 1 4 4 3 1 MalK OB fold domain AAA_21 PF13304.6 gi|389848612|ref|YP_006350849.1| - 3.3e-08 33.7 0.0 0.013 15.3 0.0 3.0 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848612|ref|YP_006350849.1| - 0.00021 20.8 0.1 0.00058 19.4 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|389848612|ref|YP_006350849.1| - 0.00024 21.3 0.1 0.00085 19.6 0.0 2.0 2 0 0 2 2 2 1 TOBE domain Rad17 PF03215.15 gi|389848612|ref|YP_006350849.1| - 0.00085 19.3 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|389848612|ref|YP_006350849.1| - 0.0011 19.2 0.5 0.0038 17.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848612|ref|YP_006350849.1| - 0.002 18.5 0.6 0.0044 17.4 0.1 1.9 2 1 0 2 2 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848612|ref|YP_006350849.1| - 0.0033 17.3 0.1 0.0069 16.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase CysA_C_terminal PF17850.1 gi|389848612|ref|YP_006350849.1| - 0.0066 17.0 0.1 0.028 15.0 0.0 2.1 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|389848612|ref|YP_006350849.1| - 0.0068 16.8 0.0 0.048 14.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TAF PF02969.17 gi|389848612|ref|YP_006350849.1| - 0.013 15.7 0.0 0.048 13.8 0.0 2.0 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) AAA_25 PF13481.6 gi|389848612|ref|YP_006350849.1| - 0.022 14.4 0.1 0.4 10.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|389848612|ref|YP_006350849.1| - 0.023 14.4 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|389848612|ref|YP_006350849.1| - 0.038 13.7 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|389848612|ref|YP_006350849.1| - 0.04 13.6 0.0 0.095 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MIT_C PF16565.5 gi|389848612|ref|YP_006350849.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT PhoH PF02562.16 gi|389848612|ref|YP_006350849.1| - 0.069 12.6 0.1 6.6 6.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_18 PF13238.6 gi|389848612|ref|YP_006350849.1| - 0.084 13.4 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|389848612|ref|YP_006350849.1| - 0.086 13.3 0.0 0.21 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|389848612|ref|YP_006350849.1| - 0.1 13.0 0.0 0.68 10.3 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|389848612|ref|YP_006350849.1| - 0.13 12.5 0.1 0.39 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Aminotran_5 PF00266.19 gi|389848613|ref|YP_006350850.1| - 2.9e-08 33.1 0.0 5.3e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|389848613|ref|YP_006350850.1| - 4e-08 32.7 3.2 1.8e-06 27.2 3.2 2.9 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|389848613|ref|YP_006350850.1| - 1.2e-05 24.1 0.6 0.00021 19.9 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389848613|ref|YP_006350850.1| - 0.00016 21.1 2.5 0.0003 20.2 2.5 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|389848613|ref|YP_006350850.1| - 0.0052 16.1 0.3 0.037 13.3 0.2 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|389848613|ref|YP_006350850.1| - 0.014 14.1 0.0 0.038 12.7 0.0 1.7 2 0 0 2 2 2 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS NAD_binding_3 PF03447.16 gi|389848613|ref|YP_006350850.1| - 0.044 14.4 0.0 0.13 12.9 0.0 1.8 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Lipase_GDSL PF00657.22 gi|389848613|ref|YP_006350850.1| - 0.21 11.6 0.0 0.48 10.4 0.0 1.6 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase PIG-L PF02585.17 gi|389848614|ref|YP_006350851.1| - 1.3e-32 113.1 1.6 2.1e-32 112.5 1.6 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|389848614|ref|YP_006350851.1| - 0.0045 17.0 0.0 0.0067 16.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Tautomerase_3 PF14832.6 gi|389848614|ref|YP_006350851.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme Ribonuc_L-PSP PF01042.21 gi|389848615|ref|YP_006350852.1| - 4.4e-42 142.9 0.2 4.9e-42 142.8 0.2 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Glyco_hydro_3 PF00933.21 gi|389848616|ref|YP_006350853.1| - 7.7e-101 337.6 0.0 9.9e-101 337.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|389848616|ref|YP_006350853.1| - 0.0005 20.1 0.0 0.0012 18.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain DUF4657 PF15552.6 gi|389848616|ref|YP_006350853.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) BPD_transp_1 PF00528.22 gi|389848617|ref|YP_006350854.1| - 1.3e-18 67.3 17.6 1.3e-18 67.3 17.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848618|ref|YP_006350855.1| - 1.6e-22 80.1 19.0 1.6e-22 80.1 19.0 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|389848619|ref|YP_006350856.1| - 1.5e-28 100.4 9.0 2.1e-28 99.9 9.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848619|ref|YP_006350856.1| - 5.6e-21 75.8 11.9 8.9e-21 75.1 11.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389848619|ref|YP_006350856.1| - 0.00011 22.0 0.1 0.00026 20.8 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848619|ref|YP_006350856.1| - 0.00029 20.5 2.5 0.00051 19.8 2.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence E2R135 PF11570.8 gi|389848619|ref|YP_006350856.1| - 0.026 14.8 0.3 0.061 13.6 0.1 1.7 2 0 0 2 2 2 0 Coiled-coil receptor-binding R-domain of colicin E2 MR_MLE_C PF13378.6 gi|389848620|ref|YP_006350857.1| - 1.3e-55 188.3 0.0 1.6e-55 188.0 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389848620|ref|YP_006350857.1| - 2.1e-25 89.2 0.0 8.2e-25 87.3 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PEP_mutase PF13714.6 gi|389848620|ref|YP_006350857.1| - 0.027 13.9 0.2 0.044 13.2 0.2 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase IclR PF01614.18 gi|389848621|ref|YP_006350858.1| - 1.5e-21 76.5 0.1 1.1e-20 73.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389848621|ref|YP_006350858.1| - 7.8e-12 44.8 0.1 4.4e-11 42.4 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|389848621|ref|YP_006350858.1| - 8.3e-09 35.2 0.0 1.9e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389848621|ref|YP_006350858.1| - 2.7e-07 30.4 0.0 7e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389848621|ref|YP_006350858.1| - 5.9e-06 26.1 0.0 1.3e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389848621|ref|YP_006350858.1| - 9.3e-06 25.6 0.1 2.3e-05 24.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389848621|ref|YP_006350858.1| - 2.1e-05 24.3 0.0 5.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389848621|ref|YP_006350858.1| - 9.8e-05 21.8 0.0 0.00023 20.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|389848621|ref|YP_006350858.1| - 0.0018 18.2 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848621|ref|YP_006350858.1| - 0.0022 17.9 0.0 0.0058 16.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389848621|ref|YP_006350858.1| - 0.0043 17.2 0.0 0.008 16.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|389848621|ref|YP_006350858.1| - 0.0071 16.7 0.0 0.017 15.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|389848621|ref|YP_006350858.1| - 0.01 15.8 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|389848621|ref|YP_006350858.1| - 0.017 15.6 0.0 0.051 14.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|389848621|ref|YP_006350858.1| - 0.022 14.9 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|389848621|ref|YP_006350858.1| - 0.037 13.8 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|389848621|ref|YP_006350858.1| - 0.058 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain IF2_N PF04760.15 gi|389848621|ref|YP_006350858.1| - 0.15 11.9 0.1 1.9 8.3 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Glu_dehyd_C PF16912.5 gi|389848622|ref|YP_006350859.1| - 1.3e-93 312.3 0.0 1.8e-93 311.9 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|389848622|ref|YP_006350859.1| - 4.1e-11 42.7 0.0 6.5e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|389848622|ref|YP_006350859.1| - 1.1e-05 25.3 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|389848622|ref|YP_006350859.1| - 0.00034 20.6 0.0 0.00059 19.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Phage_holin_1 PF04531.13 gi|389848622|ref|YP_006350859.1| - 0.11 13.0 0.1 0.23 12.0 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage holin PKD PF00801.20 gi|389848623|ref|YP_006350860.1| - 6.5e-10 38.7 5.0 6.5e-10 38.7 5.0 2.0 2 0 0 2 2 2 1 PKD domain TetR_C_33 PF13305.6 gi|389848623|ref|YP_006350860.1| - 0.16 12.8 0.2 0.34 11.7 0.2 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PKD PF00801.20 gi|389848624|ref|YP_006350861.1| - 2.4e-13 49.7 3.9 5.4e-13 48.6 3.9 1.6 1 0 0 1 1 1 1 PKD domain Glyco_hydro_18 PF00704.28 gi|389848624|ref|YP_006350861.1| - 2.9e-06 27.3 0.0 6e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.14 gi|389848624|ref|YP_006350861.1| - 0.0017 18.8 1.1 0.0017 18.8 1.1 2.6 2 0 0 2 2 2 1 Carbohydrate binding domain DUF5011 PF16403.5 gi|389848624|ref|YP_006350861.1| - 0.0036 17.4 1.1 0.0063 16.6 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF5011) DUF4625 PF15418.6 gi|389848624|ref|YP_006350861.1| - 0.15 12.3 0.1 0.3 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Glyco_hydro_18 PF00704.28 gi|389848625|ref|YP_006350862.1| - 1.4e-71 241.8 1.3 1.4e-71 241.8 1.3 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|389848625|ref|YP_006350862.1| - 1.6e-17 63.1 3.8 3.8e-17 61.9 3.8 1.7 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|389848625|ref|YP_006350862.1| - 5.1e-06 26.8 2.7 3.1e-05 24.3 2.7 2.4 1 0 0 1 1 1 1 Carbohydrate binding domain Glyco_hydro_18 PF00704.28 gi|389848626|ref|YP_006350863.1| - 5.5e-83 279.3 10.6 8.6e-83 278.6 10.6 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|389848626|ref|YP_006350863.1| - 5.2e-16 58.3 2.4 1.7e-15 56.6 2.4 1.9 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|389848626|ref|YP_006350863.1| - 3.6e-05 24.1 2.9 0.00016 22.1 2.9 2.2 1 0 0 1 1 1 1 Carbohydrate binding domain DUF3855 PF12967.7 gi|389848626|ref|YP_006350863.1| - 0.075 13.0 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3855) IucA_IucC PF04183.12 gi|389848627|ref|YP_006350864.1| - 5.7e-73 245.4 0.0 9.5e-73 244.7 0.0 1.4 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|389848627|ref|YP_006350864.1| - 6e-38 130.8 0.2 1.3e-37 129.8 0.2 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter K_oxygenase PF13434.6 gi|389848628|ref|YP_006350865.1| - 2.1e-108 362.5 0.0 2.6e-108 362.2 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 gi|389848628|ref|YP_006350865.1| - 8.8e-08 31.7 0.0 9.9e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|389848628|ref|YP_006350865.1| - 0.0026 17.1 0.0 0.018 14.3 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase RL PF17797.1 gi|389848628|ref|YP_006350865.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 RL domain NAD_binding_9 PF13454.6 gi|389848628|ref|YP_006350865.1| - 0.051 13.6 0.0 0.49 10.4 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding SgrT PF15894.5 gi|389848628|ref|YP_006350865.1| - 0.14 12.1 0.8 0.79 9.7 0.6 2.2 2 0 0 2 2 2 0 Inhibitor of glucose uptake transporter SgrT Acetyltransf_8 PF13523.6 gi|389848629|ref|YP_006350866.1| - 1.6e-44 151.1 0.1 2e-44 150.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389848629|ref|YP_006350866.1| - 7.4e-06 26.7 0.0 1.2e-05 26.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848629|ref|YP_006350866.1| - 0.01 16.0 0.0 0.013 15.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389848629|ref|YP_006350866.1| - 0.14 12.6 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain IucA_IucC PF04183.12 gi|389848630|ref|YP_006350867.1| - 1.3e-54 185.3 0.0 1.8e-54 184.8 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|389848630|ref|YP_006350867.1| - 2.3e-36 125.6 0.1 4.7e-36 124.7 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Pyridoxal_deC PF00282.19 gi|389848631|ref|YP_006350868.1| - 2.1e-62 211.0 0.0 3.4e-62 210.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|389848631|ref|YP_006350868.1| - 4.6e-07 29.4 0.0 9.8e-07 28.3 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|389848631|ref|YP_006350868.1| - 2.3e-05 23.5 0.0 0.00012 21.2 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|389848632|ref|YP_006350869.1| - 3.7e-91 305.8 0.0 4.5e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III p450 PF00067.22 gi|389848633|ref|YP_006350870.1| - 8.8e-84 281.9 0.0 1e-83 281.7 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 HTH_45 PF14947.6 gi|389848634|ref|YP_006350871.1| - 0.00013 21.9 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|389848634|ref|YP_006350871.1| - 0.00076 19.4 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|389848634|ref|YP_006350871.1| - 0.0055 16.5 0.0 0.016 15.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|389848634|ref|YP_006350871.1| - 0.074 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|389848634|ref|YP_006350871.1| - 0.083 12.8 0.0 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389848634|ref|YP_006350871.1| - 0.11 12.6 0.0 0.54 10.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain UbiA PF01040.18 gi|389848635|ref|YP_006350872.1| - 6e-18 65.1 10.2 7.8e-18 64.7 10.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Tuberculin PF12198.8 gi|389848636|ref|YP_006350873.1| - 0.0016 18.5 0.1 0.0033 17.5 0.1 1.5 1 0 0 1 1 1 1 Theoretical tuberculin protein PASTA PF03793.19 gi|389848636|ref|YP_006350873.1| - 0.019 14.8 1.0 0.038 13.9 1.0 1.4 1 0 0 1 1 1 0 PASTA domain CBM60 PF16841.5 gi|389848636|ref|YP_006350873.1| - 0.11 12.9 0.3 0.23 11.9 0.3 1.6 1 1 0 1 1 1 0 Ca-dependent carbohydrate-binding module xylan-binding Inhibitor_I69 PF13734.6 gi|389848637|ref|YP_006350874.1| - 0.0029 18.0 0.0 0.01 16.3 0.0 1.9 2 0 0 2 2 2 1 Spi protease inhibitor LPD24 PF18839.1 gi|389848637|ref|YP_006350874.1| - 0.025 14.8 0.8 0.055 13.7 0.8 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 24 Peptidase_C10 PF01640.17 gi|389848637|ref|YP_006350874.1| - 0.43 10.9 5.7 1.1 9.6 0.0 3.0 1 1 1 3 3 3 0 Peptidase C10 family GATase_3 PF07685.14 gi|389848638|ref|YP_006350875.1| - 8.9e-33 113.5 0.0 1.2e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|389848638|ref|YP_006350875.1| - 3.6e-13 49.7 0.0 5.9e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|389848638|ref|YP_006350875.1| - 1.1e-10 41.7 0.0 0.00021 21.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|389848638|ref|YP_006350875.1| - 0.058 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TP_methylase PF00590.20 gi|389848639|ref|YP_006350876.1| - 3.4e-33 115.4 0.1 4e-33 115.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|389848640|ref|YP_006350877.1| - 4.9e-52 176.5 1.5 5.6e-52 176.3 1.5 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase MGS PF02142.22 gi|389848640|ref|YP_006350877.1| - 0.0085 16.3 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain CobN-Mg_chel PF02514.16 gi|389848641|ref|YP_006350878.1| - 0 1263.5 0.0 0 1263.2 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|389848641|ref|YP_006350878.1| - 0.0028 17.4 0.0 0.0076 16.0 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain CheY-binding PF09078.11 gi|389848641|ref|YP_006350878.1| - 2.3 8.4 5.3 3.5 7.8 0.5 3.3 3 0 0 3 3 3 0 CheY binding AAA_lid_2 PF17863.1 gi|389848642|ref|YP_006350879.1| - 5.6e-23 80.6 8.5 2.3e-21 75.4 3.5 2.8 2 0 0 2 2 2 2 AAA lid domain VWA_2 PF13519.6 gi|389848642|ref|YP_006350879.1| - 1e-11 45.4 0.0 2.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|389848642|ref|YP_006350879.1| - 1.9e-11 43.8 0.0 3.6e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|389848642|ref|YP_006350879.1| - 1.2e-10 41.5 0.1 0.00029 20.8 0.0 3.4 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|389848642|ref|YP_006350879.1| - 4e-10 40.2 0.0 8e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.23 gi|389848642|ref|YP_006350879.1| - 5.6e-05 22.3 0.0 0.003 16.7 0.0 2.5 2 0 0 2 2 2 1 MCM P-loop domain VWA_CoxE PF05762.14 gi|389848642|ref|YP_006350879.1| - 0.00043 19.7 6.8 0.00092 18.7 6.8 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein Sigma54_activat PF00158.26 gi|389848642|ref|YP_006350879.1| - 0.0077 15.9 0.0 0.31 10.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|389848642|ref|YP_006350879.1| - 0.008 16.6 4.7 0.01 16.2 1.0 3.0 2 2 0 2 2 2 1 AAA ATPase domain VWA_3 PF13768.6 gi|389848642|ref|YP_006350879.1| - 0.097 12.6 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_22 PF13401.6 gi|389848642|ref|YP_006350879.1| - 0.13 12.5 0.2 2.3 8.5 0.2 2.8 2 1 0 2 2 2 0 AAA domain PQQ_2 PF13360.6 gi|389848643|ref|YP_006350880.1| - 1.9e-23 83.3 24.0 2e-12 47.2 4.8 2.6 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|389848643|ref|YP_006350880.1| - 1.3e-12 47.8 17.8 0.032 14.7 0.1 7.7 8 1 0 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|389848643|ref|YP_006350880.1| - 1.3e-09 37.5 2.5 0.18 11.8 0.1 7.2 7 0 0 7 7 7 2 PQQ enzyme repeat Ricin_B_lectin PF00652.22 gi|389848643|ref|YP_006350880.1| - 0.0079 16.4 0.0 0.1 12.8 0.0 2.6 2 1 0 2 2 2 1 Ricin-type beta-trefoil lectin domain NHL PF01436.21 gi|389848643|ref|YP_006350880.1| - 0.48 10.6 5.8 16 5.8 0.4 4.4 4 0 0 4 4 4 0 NHL repeat DUF3209 PF11483.8 gi|389848644|ref|YP_006350881.1| - 1.6e-54 183.6 1.9 1.8e-54 183.5 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) CbiX PF01903.17 gi|389848645|ref|YP_006350882.1| - 2.9e-47 159.4 0.0 7.8e-24 84.1 0.1 2.6 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|389848645|ref|YP_006350882.1| - 5.7e-10 39.2 0.2 1e-09 38.4 0.2 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|389848645|ref|YP_006350882.1| - 7.8e-08 31.9 0.0 6.3e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|389848645|ref|YP_006350882.1| - 3.5e-05 23.8 0.0 0.00013 21.9 0.0 1.9 2 0 0 2 2 2 1 Sucrase/ferredoxin-like Ferrochelatase PF00762.19 gi|389848645|ref|YP_006350882.1| - 0.0016 17.6 0.0 0.054 12.6 0.0 2.4 1 1 1 2 2 2 1 Ferrochelatase DUF1636 PF07845.11 gi|389848645|ref|YP_006350882.1| - 0.11 13.0 1.7 0.9 10.0 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1636) RNA_POL_M_15KD PF02150.16 gi|389848645|ref|YP_006350882.1| - 0.2 11.5 0.8 0.4 10.6 0.8 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Hom_end PF05204.14 gi|389848646|ref|YP_006350883.1| - 0.0061 16.7 0.1 0.054 13.7 0.0 2.0 2 0 0 2 2 2 1 Homing endonuclease LAGLIDADG_3 PF14528.6 gi|389848646|ref|YP_006350883.1| - 0.051 13.9 0.0 1.6 9.1 0.0 2.1 2 0 0 2 2 2 0 LAGLIDADG-like domain Ploopntkinase1 PF18748.1 gi|389848646|ref|YP_006350883.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 Fer4_15 PF13459.6 gi|389848647|ref|YP_006350884.1| - 3.4e-13 50.1 9.3 1.1e-12 48.5 9.3 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.11 gi|389848647|ref|YP_006350884.1| - 0.0065 16.5 0.2 0.19 11.8 0.2 2.1 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.6 gi|389848647|ref|YP_006350884.1| - 0.062 13.8 1.8 0.11 13.1 1.8 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|389848647|ref|YP_006350884.1| - 0.49 10.6 4.4 1.7 8.9 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain TP_methylase PF00590.20 gi|389848648|ref|YP_006350885.1| - 1.8e-35 122.8 0.4 2.3e-35 122.5 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Macoilin PF09726.9 gi|389848648|ref|YP_006350885.1| - 0.08 11.5 3.3 0.085 11.4 3.3 1.1 1 0 0 1 1 1 0 Macoilin family Apt1 PF10351.9 gi|389848648|ref|YP_006350885.1| - 2.5 6.8 5.1 2.9 6.6 5.1 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TP_methylase PF00590.20 gi|389848649|ref|YP_006350886.1| - 1.7e-41 142.5 0.0 2e-41 142.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|389848650|ref|YP_006350887.1| - 3.2e-28 97.5 0.0 8.3e-28 96.2 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|389848650|ref|YP_006350887.1| - 4.8e-23 81.9 0.0 1.4e-22 80.4 0.0 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|389848650|ref|YP_006350887.1| - 0.032 14.9 0.2 0.38 11.4 0.2 2.4 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|389848651|ref|YP_006350888.1| - 1e-42 146.5 0.5 1.2e-42 146.3 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.11 gi|389848651|ref|YP_006350888.1| - 0.0018 18.9 0.0 0.0067 17.1 0.0 1.9 2 1 0 2 2 2 1 Regulator of ribonuclease activity B Radical_SAM PF04055.21 gi|389848651|ref|YP_006350888.1| - 0.06 13.7 0.0 0.13 12.6 0.0 1.6 1 1 0 1 1 1 0 Radical SAM superfamily DUF5066 PF16728.5 gi|389848651|ref|YP_006350888.1| - 0.17 11.2 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5066) TP_methylase PF00590.20 gi|389848652|ref|YP_006350889.1| - 3.7e-37 128.3 0.3 4.5e-37 128.0 0.3 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GSCFA PF08885.11 gi|389848652|ref|YP_006350889.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 GSCFA family Methyltransf_25 PF13649.6 gi|389848653|ref|YP_006350890.1| - 2.8e-06 27.9 0.1 4.3e-06 27.3 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389848653|ref|YP_006350890.1| - 7.7e-06 25.6 0.1 1.7e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|389848653|ref|YP_006350890.1| - 2.4e-05 24.2 0.0 2.6e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|389848653|ref|YP_006350890.1| - 3.1e-05 23.8 0.0 4.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|389848653|ref|YP_006350890.1| - 4.5e-05 24.0 0.1 7.3e-05 23.3 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|389848653|ref|YP_006350890.1| - 0.00043 20.0 0.0 0.00064 19.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.20 gi|389848653|ref|YP_006350890.1| - 0.00096 18.5 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|389848653|ref|YP_006350890.1| - 0.0017 18.3 0.0 0.0025 17.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|389848653|ref|YP_006350890.1| - 0.0071 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.13 gi|389848653|ref|YP_006350890.1| - 0.0087 15.5 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|389848653|ref|YP_006350890.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|389848653|ref|YP_006350890.1| - 0.021 14.9 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.10 gi|389848653|ref|YP_006350890.1| - 0.027 14.1 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|389848653|ref|YP_006350890.1| - 0.047 13.4 0.5 0.08 12.7 0.5 1.4 1 1 0 1 1 1 0 Met-10+ like-protein GATase_3 PF07685.14 gi|389848653|ref|YP_006350890.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CbiM PF01891.16 gi|389848654|ref|YP_006350891.1| - 1.7e-48 165.2 23.8 2.1e-48 164.9 23.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 gi|389848655|ref|YP_006350892.1| - 1.8e-13 50.3 0.1 2.3e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|389848656|ref|YP_006350893.1| - 6.4e-39 133.8 9.8 6.4e-39 133.8 9.8 1.3 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|389848657|ref|YP_006350894.1| - 4.1e-32 111.6 0.0 5.1e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848657|ref|YP_006350894.1| - 8.1e-13 48.8 0.0 3e-06 27.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848657|ref|YP_006350894.1| - 2.8e-08 33.5 0.0 8.7e-06 25.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389848657|ref|YP_006350894.1| - 0.00018 21.2 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|389848657|ref|YP_006350894.1| - 0.00098 19.7 0.0 0.0015 19.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|389848657|ref|YP_006350894.1| - 0.0014 18.5 0.0 0.0061 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|389848657|ref|YP_006350894.1| - 0.002 18.5 0.0 0.0048 17.3 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|389848657|ref|YP_006350894.1| - 0.0023 17.7 0.0 0.007 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|389848657|ref|YP_006350894.1| - 0.0035 17.0 0.0 0.0052 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|389848657|ref|YP_006350894.1| - 0.0076 16.5 0.0 0.18 12.1 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|389848657|ref|YP_006350894.1| - 0.0083 16.1 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase Zeta_toxin PF06414.12 gi|389848657|ref|YP_006350894.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|389848657|ref|YP_006350894.1| - 0.014 15.6 0.0 0.043 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF4350 PF14258.6 gi|389848657|ref|YP_006350894.1| - 0.031 14.7 0.3 3.1 8.3 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) MukB PF04310.12 gi|389848657|ref|YP_006350894.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal NACHT PF05729.12 gi|389848657|ref|YP_006350894.1| - 0.09 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain UPF0139 PF03669.13 gi|389848658|ref|YP_006350895.1| - 0.36 10.7 1.1 0.91 9.4 0.4 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0139) MccV PF17508.2 gi|389848658|ref|YP_006350895.1| - 1.2 9.7 2.9 13 6.4 0.1 2.4 2 0 0 2 2 2 0 Microcin V bacteriocin SARS_X4 PF08779.10 gi|389848660|ref|YP_006350897.1| - 0.18 12.0 0.0 0.19 11.9 0.0 1.1 1 0 0 1 1 1 0 SARS coronavirus X4 like AAA_26 PF13500.6 gi|389848661|ref|YP_006350898.1| - 1.9e-36 125.8 0.0 2.2e-36 125.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848661|ref|YP_006350898.1| - 1.2e-07 31.8 0.0 2.1e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|389848661|ref|YP_006350898.1| - 0.00011 21.6 0.5 0.0019 17.5 0.3 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain Aminotran_1_2 PF00155.21 gi|389848662|ref|YP_006350899.1| - 1.3e-56 192.4 0.0 1.5e-56 192.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|389848662|ref|YP_006350899.1| - 0.00022 19.9 0.0 0.00031 19.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389848662|ref|YP_006350899.1| - 0.011 15.1 1.4 0.028 13.7 1.4 1.8 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peripla_BP_2 PF01497.18 gi|389848662|ref|YP_006350899.1| - 0.026 14.1 0.0 0.092 12.3 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein Aminotran_5 PF00266.19 gi|389848662|ref|YP_006350899.1| - 0.058 12.3 0.0 0.074 12.0 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V RTC PF01137.21 gi|389848662|ref|YP_006350899.1| - 0.098 11.8 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 RNA 3'-terminal phosphate cyclase ELFV_dehydrog PF00208.21 gi|389848663|ref|YP_006350900.1| - 0.0027 17.5 0.5 0.0075 16.0 0.1 1.9 1 1 1 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|389848663|ref|YP_006350900.1| - 0.026 15.3 0.6 12 6.7 0.0 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold BATS PF06968.13 gi|389848664|ref|YP_006350901.1| - 8.8e-16 57.8 0.0 2e-15 56.7 0.0 1.6 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 gi|389848664|ref|YP_006350901.1| - 1.2e-15 58.3 0.3 8.7e-13 49.0 0.1 2.2 2 0 0 2 2 2 2 Radical SAM superfamily adh_short PF00106.25 gi|389848665|ref|YP_006350902.1| - 1.1e-60 204.5 0.2 1.3e-60 204.2 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389848665|ref|YP_006350902.1| - 1.1e-45 156.1 0.8 3.3e-45 154.5 0.8 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|389848665|ref|YP_006350902.1| - 3.7e-14 53.1 0.1 4.8e-14 52.7 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|389848665|ref|YP_006350902.1| - 4.4e-08 33.2 1.4 6.4e-08 32.7 1.4 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|389848665|ref|YP_006350902.1| - 2.7e-07 30.3 0.0 4.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|389848665|ref|YP_006350902.1| - 5.4e-07 29.0 0.3 6.9e-07 28.7 0.3 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Sacchrp_dh_NADP PF03435.18 gi|389848665|ref|YP_006350902.1| - 1.6e-05 25.2 0.7 3.9e-05 23.9 0.2 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|389848665|ref|YP_006350902.1| - 0.0021 17.9 0.1 0.0032 17.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389848665|ref|YP_006350902.1| - 0.0043 17.3 0.9 0.01 16.1 0.2 1.9 2 0 0 2 2 2 1 TrkA-N domain Glyco_trans_4_4 PF13579.6 gi|389848665|ref|YP_006350902.1| - 0.0052 17.2 1.4 0.089 13.2 0.6 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain GDP_Man_Dehyd PF16363.5 gi|389848665|ref|YP_006350902.1| - 0.0065 15.9 0.0 0.014 14.8 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|389848665|ref|YP_006350902.1| - 0.007 15.5 0.9 0.0094 15.1 0.9 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Glyco_transf_4 PF13439.6 gi|389848665|ref|YP_006350902.1| - 0.0076 16.3 0.0 1.4 8.9 0.0 2.5 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Shikimate_DH PF01488.20 gi|389848665|ref|YP_006350902.1| - 0.0099 15.9 0.5 0.04 14.0 0.1 2.2 2 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase DFP PF04127.15 gi|389848665|ref|YP_006350902.1| - 0.013 15.4 0.7 0.021 14.7 0.7 1.5 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_Gly3P_dh_N PF01210.23 gi|389848665|ref|YP_006350902.1| - 0.032 14.2 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|389848665|ref|YP_006350902.1| - 0.033 13.8 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.19 gi|389848665|ref|YP_006350902.1| - 0.034 13.5 0.2 0.27 10.5 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_transf_5 PF08323.11 gi|389848665|ref|YP_006350902.1| - 0.037 13.7 0.0 1.8 8.2 0.0 2.3 1 1 0 2 2 2 0 Starch synthase catalytic domain F420_oxidored PF03807.17 gi|389848665|ref|YP_006350902.1| - 0.037 14.6 0.1 0.19 12.3 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GAPES2 PF17156.4 gi|389848665|ref|YP_006350902.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain Herpes_capsid PF06112.11 gi|389848666|ref|YP_006350903.1| - 0.48 10.5 6.7 0.81 9.7 6.7 1.3 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein ABC2_membrane_2 PF12679.7 gi|389848667|ref|YP_006350904.1| - 6.2e-37 127.4 21.0 3.1e-36 125.1 21.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389848667|ref|YP_006350904.1| - 3.6e-08 32.9 21.0 3.6e-08 32.9 21.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848667|ref|YP_006350904.1| - 3.2e-07 30.1 16.2 9e-07 28.7 15.7 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389848667|ref|YP_006350904.1| - 4.4e-06 26.8 10.7 4.4e-06 26.8 10.7 2.5 1 1 0 2 2 2 1 ABC-2 family transporter protein PDR_CDR PF06422.12 gi|389848667|ref|YP_006350904.1| - 0.028 14.3 2.5 0.12 12.3 0.1 2.5 2 0 0 2 2 2 0 CDR ABC transporter ABC_tran PF00005.27 gi|389848668|ref|YP_006350905.1| - 7.2e-29 101.1 0.0 1.5e-28 100.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389848668|ref|YP_006350905.1| - 1.4e-09 38.2 0.2 0.00012 22.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848668|ref|YP_006350905.1| - 3e-07 31.1 0.4 1.3e-06 29.1 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|389848668|ref|YP_006350905.1| - 0.007 16.9 0.1 0.018 15.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389848668|ref|YP_006350905.1| - 0.0078 15.7 0.1 2.3 7.6 0.0 2.7 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|389848668|ref|YP_006350905.1| - 0.016 14.9 0.0 0.037 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389848668|ref|YP_006350905.1| - 0.029 14.1 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|389848668|ref|YP_006350905.1| - 0.045 13.7 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|389848668|ref|YP_006350905.1| - 0.081 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|389848668|ref|YP_006350905.1| - 0.2 11.1 0.0 0.43 10.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region CinA PF02464.17 gi|389848669|ref|YP_006350906.1| - 0.061 12.9 0.5 0.11 12.1 0.5 1.4 1 0 0 1 1 1 0 Competence-damaged protein YkyA PF10368.9 gi|389848669|ref|YP_006350906.1| - 0.07 12.8 0.7 0.18 11.5 0.2 1.9 3 0 0 3 3 3 0 Putative cell-wall binding lipoprotein OmpH PF03938.14 gi|389848669|ref|YP_006350906.1| - 1.3 9.3 4.8 0.66 10.3 1.7 2.1 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) NosL PF05573.12 gi|389848670|ref|YP_006350907.1| - 1.2e-39 135.6 0.1 1.5e-39 135.4 0.1 1.1 1 0 0 1 1 1 1 NosL ABC2_membrane_2 PF12679.7 gi|389848672|ref|YP_006350909.1| - 7.1e-24 84.6 24.6 2.5e-21 76.2 24.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848672|ref|YP_006350909.1| - 0.00023 20.8 4.9 0.00023 20.8 4.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389848673|ref|YP_006350910.1| - 1.7e-30 106.3 0.0 2.7e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848673|ref|YP_006350910.1| - 3.6e-13 50.0 0.8 2.1e-08 34.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848673|ref|YP_006350910.1| - 0.00014 22.5 0.0 0.00026 21.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|389848673|ref|YP_006350910.1| - 0.0039 17.6 0.2 0.014 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|389848673|ref|YP_006350910.1| - 0.015 14.5 0.0 0.033 13.5 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.23 gi|389848673|ref|YP_006350910.1| - 0.016 15.3 0.0 0.034 14.2 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|389848673|ref|YP_006350910.1| - 0.047 13.4 0.7 0.089 12.5 0.7 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|389848673|ref|YP_006350910.1| - 0.07 13.0 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|389848673|ref|YP_006350910.1| - 0.11 12.1 0.1 6.4 6.4 0.0 2.3 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.14 gi|389848673|ref|YP_006350910.1| - 0.27 10.4 0.2 0.41 9.8 0.2 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_23 PF13476.6 gi|389848673|ref|YP_006350910.1| - 0.37 11.3 0.6 0.58 10.6 0.6 1.2 1 0 0 1 1 1 0 AAA domain NosD PF05048.13 gi|389848674|ref|YP_006350911.1| - 1.6e-51 174.9 22.5 8.9e-48 162.6 15.6 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|389848674|ref|YP_006350911.1| - 5.3e-27 94.6 25.5 1.3e-19 70.6 9.3 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|389848674|ref|YP_006350911.1| - 9e-05 21.9 12.5 0.0016 17.8 0.2 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|389848674|ref|YP_006350911.1| - 0.047 13.5 16.9 0.027 14.3 5.9 2.7 1 1 0 2 2 2 0 Pectate lyase superfamily protein Gemini_mov PF01708.16 gi|389848675|ref|YP_006350912.1| - 0.091 12.5 2.4 0.27 11.0 0.0 2.5 2 1 0 2 2 2 0 Geminivirus putative movement protein nos_propeller_2 PF18793.1 gi|389848676|ref|YP_006350913.1| - 1.8e-32 111.4 0.1 7e-32 109.6 0.1 2.1 1 0 0 1 1 1 1 Nitrous oxide reductase propeller repeat 2 nos_propeller PF18764.1 gi|389848676|ref|YP_006350913.1| - 5.1e-28 96.8 0.7 3.8e-26 90.8 0.2 3.3 3 0 0 3 3 3 1 Nitrous oxide reductase propeller repeat TAT_signal PF10518.9 gi|389848676|ref|YP_006350913.1| - 7.2e-08 32.0 3.1 1.6e-07 30.8 3.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|389848676|ref|YP_006350913.1| - 1.1e-05 25.5 0.0 3e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.20 gi|389848676|ref|YP_006350913.1| - 2.2e-05 24.3 0.0 7.5e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Copper-bind PF00127.20 gi|389848677|ref|YP_006350914.1| - 1.6e-18 67.0 0.5 3.5e-18 65.9 0.5 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389848677|ref|YP_006350914.1| - 2.3e-05 24.4 1.0 0.00051 20.1 1.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|389848677|ref|YP_006350914.1| - 0.34 10.8 2.2 1.3 9.0 2.2 2.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CPP1-like PF11833.8 gi|389848678|ref|YP_006350915.1| - 0.059 13.0 4.1 0.063 12.9 4.1 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2249 PF10006.9 gi|389848680|ref|YP_006350917.1| - 1.6e-21 75.9 0.0 1.9e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) YrhK PF14145.6 gi|389848681|ref|YP_006350918.1| - 0.037 13.9 0.3 0.037 13.9 0.3 2.2 2 0 0 2 2 2 0 YrhK-like protein COX1 PF00115.20 gi|389848681|ref|YP_006350918.1| - 0.17 10.7 31.9 0.047 12.5 5.9 3.1 3 0 0 3 3 3 0 Cytochrome C and Quinol oxidase polypeptide I Oxidored_molyb PF00174.19 gi|389848682|ref|YP_006350919.1| - 2e-14 53.5 0.0 6.5e-14 51.9 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain ParA PF10609.9 gi|389848683|ref|YP_006350920.1| - 3.2e-62 210.2 0.0 4.4e-62 209.7 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|389848683|ref|YP_006350920.1| - 1.6e-16 59.9 0.2 3.4e-16 58.9 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) FeS_assembly_P PF01883.19 gi|389848683|ref|YP_006350920.1| - 1.6e-14 53.8 1.1 1.6e-14 53.8 1.1 2.6 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|389848683|ref|YP_006350920.1| - 6.5e-12 45.6 0.0 1.6e-11 44.4 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|389848683|ref|YP_006350920.1| - 2.3e-06 27.6 0.5 0.0027 17.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|389848683|ref|YP_006350920.1| - 9.6e-06 25.6 0.3 0.00023 21.1 0.4 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|389848683|ref|YP_006350920.1| - 0.00054 19.2 2.5 0.13 11.4 2.6 2.4 2 0 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.11 gi|389848683|ref|YP_006350920.1| - 0.004 16.5 0.2 0.0071 15.7 0.2 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|389848683|ref|YP_006350920.1| - 0.0089 15.6 1.1 0.053 13.1 0.2 2.3 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|389848683|ref|YP_006350920.1| - 0.012 14.9 0.8 0.021 14.1 0.1 1.7 2 0 0 2 2 2 0 ATPase MipZ CBP_BcsQ PF06564.12 gi|389848683|ref|YP_006350920.1| - 0.11 12.0 0.3 0.56 9.6 0.3 2.0 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ HEAT_2 PF13646.6 gi|389848684|ref|YP_006350921.1| - 1e-23 83.5 18.5 3.4e-13 49.8 2.7 3.6 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|389848684|ref|YP_006350921.1| - 1.7e-10 40.2 10.8 0.42 11.0 0.0 6.3 6 0 0 6 6 6 5 HEAT repeat HEAT_EZ PF13513.6 gi|389848684|ref|YP_006350921.1| - 4.7e-05 23.8 14.4 0.021 15.3 2.1 5.4 4 2 2 6 6 6 2 HEAT-like repeat Cnd1 PF12717.7 gi|389848684|ref|YP_006350921.1| - 0.0003 20.9 0.6 0.16 12.0 0.1 3.7 1 1 3 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|389848684|ref|YP_006350921.1| - 0.025 13.1 0.4 0.13 10.8 0.0 2.0 2 0 0 2 2 2 0 Adaptin N terminal region HEAT_PBS PF03130.16 gi|389848684|ref|YP_006350921.1| - 0.19 12.5 14.5 15 6.6 0.0 5.7 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat YtpI PF14007.6 gi|389848685|ref|YP_006350922.1| - 1.7 8.8 4.3 11 6.2 0.0 2.9 1 1 1 2 2 2 0 YtpI-like protein Nitrate_red_del PF02613.15 gi|389848686|ref|YP_006350923.1| - 1.8e-09 37.7 0.9 5.2e-08 33.0 0.6 2.4 1 1 1 2 2 2 2 Nitrate reductase delta subunit DUF2092 PF09865.9 gi|389848686|ref|YP_006350923.1| - 0.0074 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MID_pPIWI_RE PF18157.1 gi|389848686|ref|YP_006350923.1| - 0.018 15.4 0.0 0.043 14.1 0.0 1.6 2 0 0 2 2 2 0 MID domain of pPIWI_RE EB_dh PF09459.10 gi|389848687|ref|YP_006350924.1| - 1e-29 104.3 3.3 3.9e-14 53.2 0.7 2.1 1 1 1 2 2 2 2 Ethylbenzene dehydrogenase DUF4179 PF13786.6 gi|389848687|ref|YP_006350924.1| - 0.2 12.1 0.1 0.2 12.1 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Fer4_11 PF13247.6 gi|389848688|ref|YP_006350925.1| - 2e-29 101.7 6.8 2e-29 101.7 6.8 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389848688|ref|YP_006350925.1| - 4.9e-11 42.6 18.5 2e-05 24.6 7.9 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389848688|ref|YP_006350925.1| - 1.6e-10 41.4 16.4 5.2e-05 23.7 7.2 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389848688|ref|YP_006350925.1| - 1.1e-07 31.9 18.6 0.016 15.4 0.3 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|389848688|ref|YP_006350925.1| - 6.6e-05 23.6 4.1 0.25 12.1 0.0 3.8 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|389848688|ref|YP_006350925.1| - 0.00022 21.1 29.5 0.002 18.1 2.3 4.0 5 0 0 5 5 3 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|389848688|ref|YP_006350925.1| - 0.00039 20.9 19.7 0.13 12.8 0.1 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389848688|ref|YP_006350925.1| - 0.00075 19.2 29.7 0.014 15.2 2.7 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389848688|ref|YP_006350925.1| - 0.00085 19.3 26.4 0.011 15.8 0.9 4.2 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|389848688|ref|YP_006350925.1| - 0.016 15.7 1.3 0.016 15.7 1.3 4.1 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|389848688|ref|YP_006350925.1| - 0.016 15.3 23.1 0.03 14.5 1.7 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|389848688|ref|YP_006350925.1| - 0.12 12.9 13.4 0.21 12.2 0.1 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|389848688|ref|YP_006350925.1| - 0.42 11.6 24.4 0.21 12.6 1.4 4.0 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|389848688|ref|YP_006350925.1| - 0.56 11.3 34.9 0.11 13.4 5.8 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|389848688|ref|YP_006350925.1| - 0.62 10.6 21.0 1.2 9.7 10.9 4.0 2 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|389848689|ref|YP_006350926.1| - 4.2e-93 312.7 0.0 6.2e-93 312.1 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|389848689|ref|YP_006350926.1| - 1.3e-20 73.5 0.0 2.9e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|389848689|ref|YP_006350926.1| - 0.042 13.8 0.4 0.093 12.7 0.4 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain DUF3040 PF11239.8 gi|389848690|ref|YP_006350927.1| - 0.15 12.4 2.7 0.17 12.1 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Cytochrom_B_N_2 PF13631.6 gi|389848691|ref|YP_006350928.1| - 3.8e-45 153.9 0.7 3.8e-45 153.9 0.7 2.9 3 2 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|389848691|ref|YP_006350928.1| - 6.2e-30 104.4 8.8 6.2e-30 104.4 8.8 3.1 3 1 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|389848691|ref|YP_006350928.1| - 8.2e-07 29.3 0.9 3.9e-06 27.1 0.9 2.2 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|389848691|ref|YP_006350928.1| - 0.0081 16.7 7.2 0.0081 16.7 7.2 3.9 4 1 0 4 4 4 1 Domain of unknown function (DUF4405) Mntp PF02659.15 gi|389848691|ref|YP_006350928.1| - 0.13 12.0 0.1 0.13 12.0 0.1 3.7 5 1 1 6 6 6 0 Putative manganese efflux pump OppC_N PF12911.7 gi|389848691|ref|YP_006350928.1| - 0.19 11.7 1.9 6.5 6.8 0.3 3.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4516 PF14990.6 gi|389848691|ref|YP_006350928.1| - 0.3 10.8 1.3 0.85 9.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) Rieske PF00355.26 gi|389848692|ref|YP_006350929.1| - 1.4e-11 44.2 0.0 2e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TetR_N PF00440.23 gi|389848694|ref|YP_006350931.1| - 1.1e-10 41.1 0.2 2e-10 40.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|389848694|ref|YP_006350931.1| - 1.7e-09 37.9 0.7 5.2e-09 36.3 0.1 2.1 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 gi|389848694|ref|YP_006350931.1| - 3.2e-06 27.1 0.2 2.2e-05 24.4 0.0 2.3 3 0 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|389848694|ref|YP_006350931.1| - 0.00023 21.4 0.1 0.0017 18.6 0.0 2.4 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|389848694|ref|YP_006350931.1| - 0.00066 19.7 0.0 0.0016 18.5 0.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_10 PF16295.5 gi|389848694|ref|YP_006350931.1| - 0.0038 17.5 0.0 0.0078 16.5 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|389848694|ref|YP_006350931.1| - 0.037 14.1 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Hemerythrin PF01814.23 gi|389848694|ref|YP_006350931.1| - 0.33 11.6 4.2 0.63 10.7 4.2 1.6 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain MFS_1 PF07690.16 gi|389848695|ref|YP_006350932.1| - 2.3e-57 194.6 43.7 1e-33 116.7 16.6 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|389848695|ref|YP_006350932.1| - 7.2e-17 61.4 23.0 3.6e-09 36.0 7.0 3.2 1 1 2 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 gi|389848695|ref|YP_006350932.1| - 5.4e-14 51.8 16.9 1.8e-08 33.7 3.9 3.4 2 2 2 4 4 4 3 MFS_1 like family MFS_3 PF05977.13 gi|389848695|ref|YP_006350932.1| - 0.00027 19.5 15.9 0.0041 15.6 5.4 2.5 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 gi|389848695|ref|YP_006350932.1| - 0.0007 19.0 24.7 0.001 18.5 24.7 1.3 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF2238 PF09997.9 gi|389848696|ref|YP_006350933.1| - 0.0033 17.2 0.6 0.0049 16.7 0.6 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4135 PF13575.6 gi|389848697|ref|YP_006350934.1| - 7.2e-93 311.9 0.0 1e-92 311.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.13 gi|389848697|ref|YP_006350934.1| - 3.9e-57 193.4 0.0 5e-57 193.1 0.0 1.1 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein Glyco_hydro_127 PF07944.12 gi|389848697|ref|YP_006350934.1| - 3.2e-05 22.7 0.0 0.0053 15.3 0.0 2.2 2 0 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_47 PF01532.20 gi|389848697|ref|YP_006350934.1| - 0.0039 16.2 0.0 0.015 14.3 0.0 1.8 1 1 1 2 2 2 1 Glycosyl hydrolase family 47 Glyco_hydro_76 PF03663.14 gi|389848697|ref|YP_006350934.1| - 0.0066 16.0 0.0 2.5 7.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 GlcNAc_2-epim PF07221.11 gi|389848697|ref|YP_006350934.1| - 0.027 13.7 0.1 0.93 8.7 0.0 2.3 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) MCRA PF06100.11 gi|389848698|ref|YP_006350935.1| - 2.1e-210 699.7 0.0 2.4e-210 699.5 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 gi|389848698|ref|YP_006350935.1| - 2.1e-06 27.9 0.1 4.3e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389848698|ref|YP_006350935.1| - 5e-06 26.3 1.3 3.9e-05 23.4 1.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389848698|ref|YP_006350935.1| - 0.28 10.2 1.0 18 4.3 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain DUF4135 PF13575.6 gi|389848701|ref|YP_006350938.1| - 1.7e-94 317.3 0.0 3.2e-94 316.3 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4135) LANC_like PF05147.13 gi|389848701|ref|YP_006350938.1| - 5.3e-52 176.5 0.0 7.1e-52 176.1 0.0 1.2 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein ABC2_membrane_3 PF12698.7 gi|389848702|ref|YP_006350939.1| - 3.7e-06 26.3 23.1 0.00059 19.1 23.1 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389848702|ref|YP_006350939.1| - 0.0024 17.9 5.4 0.0024 17.9 5.4 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|389848702|ref|YP_006350939.1| - 0.3 10.3 18.9 0.025 13.8 12.3 2.4 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389848703|ref|YP_006350940.1| - 1.2e-30 106.8 0.0 2.1e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848703|ref|YP_006350940.1| - 8.6e-12 45.5 1.4 5.4e-08 33.0 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848703|ref|YP_006350940.1| - 3.9e-05 24.3 0.4 0.00012 22.7 0.1 2.1 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_22 PF13401.6 gi|389848703|ref|YP_006350940.1| - 0.00048 20.4 1.5 0.0037 17.5 0.6 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|389848703|ref|YP_006350940.1| - 0.00099 18.8 0.2 0.0022 17.7 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|389848703|ref|YP_006350940.1| - 0.0044 16.8 0.1 0.028 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|389848703|ref|YP_006350940.1| - 0.005 16.6 1.0 0.73 9.5 0.0 2.4 2 1 0 3 3 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|389848703|ref|YP_006350940.1| - 0.0066 16.5 0.4 1.1 9.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|389848703|ref|YP_006350940.1| - 0.008 16.7 2.2 0.016 15.7 1.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848703|ref|YP_006350940.1| - 0.025 15.0 0.1 0.06 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|389848703|ref|YP_006350940.1| - 0.034 13.8 0.2 0.078 12.6 0.2 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1383 PF07134.11 gi|389848703|ref|YP_006350940.1| - 0.044 12.9 0.4 0.069 12.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) SMC_N PF02463.19 gi|389848703|ref|YP_006350940.1| - 0.064 12.7 5.1 0.74 9.2 2.0 2.5 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|389848703|ref|YP_006350940.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389848703|ref|YP_006350940.1| - 0.097 12.4 0.4 0.2 11.3 0.4 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389848703|ref|YP_006350940.1| - 0.13 11.4 1.9 1.3 8.1 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|389848703|ref|YP_006350940.1| - 0.13 12.6 2.7 1.9 8.9 2.2 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0228 PF05727.11 gi|389848703|ref|YP_006350940.1| - 0.15 11.9 0.9 3.6 7.4 0.2 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0228) AAA_19 PF13245.6 gi|389848703|ref|YP_006350940.1| - 0.15 12.4 0.5 0.3 11.4 0.3 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|389848703|ref|YP_006350940.1| - 0.57 10.3 3.8 2.7 8.1 1.5 2.8 1 1 1 2 2 2 0 50S ribosome-binding GTPase PKD PF00801.20 gi|389848704|ref|YP_006350941.1| - 1.5e-06 27.9 3.8 1.5e-06 27.9 3.8 2.0 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.14 gi|389848704|ref|YP_006350941.1| - 0.00076 19.9 4.1 0.003 18.1 4.1 2.1 1 0 0 1 1 1 1 Carbohydrate binding domain PKD_3 PF16820.5 gi|389848704|ref|YP_006350941.1| - 0.0068 16.1 0.6 0.019 14.7 0.6 1.7 1 0 0 1 1 1 1 PKD-like domain Ig_3 PF13927.6 gi|389848704|ref|YP_006350941.1| - 0.034 14.8 1.6 0.23 12.1 0.7 2.5 2 0 0 2 2 2 0 Immunoglobulin domain GAT PF03127.14 gi|389848704|ref|YP_006350941.1| - 0.069 13.5 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 GAT domain FctA PF12892.7 gi|389848704|ref|YP_006350941.1| - 0.092 13.6 5.2 0.29 12.0 5.2 1.9 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain SusE PF14292.6 gi|389848704|ref|YP_006350941.1| - 6.4 7.1 9.6 3 8.1 6.7 1.9 2 0 0 2 2 2 0 SusE outer membrane protein HisKA_7TM PF16927.5 gi|389848706|ref|YP_006350943.1| - 5.6e-36 124.6 17.1 7.1e-36 124.3 17.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|389848706|ref|YP_006350943.1| - 6.7e-18 65.2 0.0 1.6e-17 64.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|389848706|ref|YP_006350943.1| - 1.8e-06 27.8 0.0 1.3e-05 25.1 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|389848706|ref|YP_006350943.1| - 2e-06 27.8 0.0 4.5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|389848706|ref|YP_006350943.1| - 5.1e-06 26.7 1.4 0.00024 21.3 0.7 2.8 2 1 0 2 2 2 1 PAS fold PAS PF00989.25 gi|389848706|ref|YP_006350943.1| - 0.00017 21.6 1.7 0.0072 16.3 0.0 2.9 2 1 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|389848706|ref|YP_006350943.1| - 0.00018 21.7 0.5 0.002 18.3 0.2 2.8 2 1 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|389848706|ref|YP_006350943.1| - 0.00027 20.8 0.0 0.00066 19.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|389848706|ref|YP_006350943.1| - 0.0023 17.9 1.3 0.0045 17.0 1.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|389848706|ref|YP_006350943.1| - 0.0072 15.9 0.1 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|389848706|ref|YP_006350943.1| - 0.015 15.5 2.1 1.4 9.2 0.1 3.2 2 2 1 3 3 3 0 PAS fold PAS_10 PF13596.6 gi|389848706|ref|YP_006350943.1| - 0.11 13.1 0.1 0.56 10.8 0.1 2.2 1 1 0 1 1 1 0 PAS domain DUF547 PF04784.14 gi|389848707|ref|YP_006350944.1| - 6.8e-28 97.2 0.0 1e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 HTH_10 PF04967.12 gi|389848708|ref|YP_006350945.1| - 2.3e-16 59.3 0.0 3.6e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HrcA_DNA-bdg PF03444.15 gi|389848708|ref|YP_006350945.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDE_Tnp_IS240 PF13610.6 gi|389848709|ref|YP_006350946.1| - 3.4e-06 27.3 0.0 3.5e-06 27.3 0.0 1.0 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389848710|ref|YP_006350947.1| - 0.00019 21.2 0.0 0.00021 21.0 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389848710|ref|YP_006350947.1| - 0.06 13.4 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Methyltransf_2 PF00891.18 gi|389848711|ref|YP_006350948.1| - 3.2e-20 72.3 0.0 4.3e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_12 PF08242.12 gi|389848711|ref|YP_006350948.1| - 2e-08 34.9 0.0 4e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Dimerisation2 PF16864.5 gi|389848711|ref|YP_006350948.1| - 7.4e-08 32.3 0.1 1.8e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_23 PF13489.6 gi|389848711|ref|YP_006350948.1| - 2.3e-07 30.8 0.0 7.7e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389848711|ref|YP_006350948.1| - 1e-06 29.3 0.0 2.1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389848711|ref|YP_006350948.1| - 0.0011 18.5 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Dimerisation PF08100.11 gi|389848711|ref|YP_006350948.1| - 0.0014 18.6 0.1 0.0071 16.3 0.0 2.2 3 0 0 3 3 3 1 Dimerisation domain Methyltransf_11 PF08241.12 gi|389848711|ref|YP_006350948.1| - 0.003 18.2 0.0 0.0058 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N_2 PF13602.6 gi|389848711|ref|YP_006350948.1| - 0.16 13.0 0.0 0.66 11.0 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Abhydrolase_1 PF00561.20 gi|389848712|ref|YP_006350949.1| - 8.9e-24 84.5 0.6 9.4e-23 81.2 0.6 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389848712|ref|YP_006350949.1| - 1.3e-18 68.5 3.5 1.6e-18 68.1 3.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389848712|ref|YP_006350949.1| - 2.1e-12 46.8 0.0 3.2e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|389848712|ref|YP_006350949.1| - 0.0091 15.5 0.0 0.16 11.4 0.0 2.5 3 0 0 3 3 3 1 Prolyl oligopeptidase family Esterase PF00756.20 gi|389848712|ref|YP_006350949.1| - 0.044 13.4 0.1 0.098 12.3 0.0 1.5 1 1 0 1 1 1 0 Putative esterase Thioesterase PF00975.20 gi|389848712|ref|YP_006350949.1| - 0.082 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain AMP-binding PF00501.28 gi|389848713|ref|YP_006350950.1| - 8.5e-89 298.1 0.1 1e-88 297.8 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389848713|ref|YP_006350950.1| - 7.2e-19 68.5 0.5 1.7e-18 67.4 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|389848713|ref|YP_006350950.1| - 7.3e-11 41.8 1.7 1.6e-10 40.7 1.7 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DMRL_synthase PF00885.19 gi|389848713|ref|YP_006350950.1| - 0.0013 18.5 1.4 1.1 9.1 0.4 2.2 2 0 0 2 2 2 2 6,7-dimethyl-8-ribityllumazine synthase BAT PF15915.5 gi|389848714|ref|YP_006350951.1| - 3.8e-41 140.6 11.8 3.8e-41 140.6 11.8 2.4 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|389848714|ref|YP_006350951.1| - 1.4e-20 72.8 0.0 3.5e-20 71.5 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|389848714|ref|YP_006350951.1| - 7.3e-07 29.6 0.4 1.8e-06 28.3 0.4 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|389848714|ref|YP_006350951.1| - 2.1e-06 28.1 0.2 5.9e-06 26.6 0.2 1.8 1 0 0 1 1 1 1 GAF domain Phage_integrase PF00589.22 gi|389848714|ref|YP_006350951.1| - 1.6e-05 24.8 0.1 0.00013 21.8 0.0 2.4 2 1 0 2 2 2 1 Phage integrase family Sigma70_r4 PF04545.16 gi|389848714|ref|YP_006350951.1| - 0.018 14.5 0.0 0.064 12.8 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 GAF PF01590.26 gi|389848714|ref|YP_006350951.1| - 0.021 15.5 0.1 0.044 14.4 0.1 1.7 1 0 0 1 1 1 0 GAF domain GerE PF00196.19 gi|389848714|ref|YP_006350951.1| - 0.096 12.3 0.0 0.33 10.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family AMP-binding PF00501.28 gi|389848715|ref|YP_006350952.1| - 8.4e-92 307.9 0.0 1e-91 307.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389848715|ref|YP_006350952.1| - 1.2e-23 83.9 0.4 2.3e-23 83.0 0.4 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|389848715|ref|YP_006350952.1| - 5.1e-14 51.9 1.8 5.1e-14 51.9 1.8 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DUF4212 PF13937.6 gi|389848716|ref|YP_006350953.1| - 2.1e-19 69.7 0.1 2.6e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF485 PF04341.12 gi|389848716|ref|YP_006350953.1| - 0.046 13.7 0.6 0.064 13.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 SSF PF00474.17 gi|389848717|ref|YP_006350954.1| - 1.6e-54 185.3 33.8 2.4e-54 184.7 33.8 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Ycf9 PF01737.17 gi|389848717|ref|YP_006350954.1| - 0.038 13.9 4.4 2.6 8.0 0.1 3.4 2 0 0 2 2 2 0 YCF9 UFC1 PF08694.11 gi|389848717|ref|YP_006350954.1| - 0.21 11.2 0.2 0.37 10.4 0.2 1.3 1 0 0 1 1 1 0 Ubiquitin-fold modifier-conjugating enzyme 1 Usp PF00582.26 gi|389848718|ref|YP_006350955.1| - 6.7e-39 133.6 1.7 8.2e-39 133.3 1.7 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|389848718|ref|YP_006350955.1| - 0.038 13.9 0.0 3.2 7.6 0.0 2.2 1 1 0 2 2 2 0 Electron transfer flavoprotein domain MGS PF02142.22 gi|389848718|ref|YP_006350955.1| - 0.058 13.6 0.0 0.3 11.3 0.0 2.1 1 1 0 2 2 2 0 MGS-like domain YrzK PF17449.2 gi|389848718|ref|YP_006350955.1| - 0.078 13.3 0.1 0.18 12.1 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized YrzK-like TMEM208_SND2 PF05620.11 gi|389848719|ref|YP_006350956.1| - 0.048 13.4 0.1 0.055 13.2 0.1 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 SBP56 PF05694.11 gi|389848720|ref|YP_006350957.1| - 3.7e-191 635.9 0.8 4.3e-191 635.6 0.8 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|389848720|ref|YP_006350957.1| - 0.0011 18.3 0.0 0.036 13.3 0.0 2.3 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Beta_propel PF09826.9 gi|389848720|ref|YP_006350957.1| - 0.015 14.1 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 Beta propeller domain Fer2 PF00111.27 gi|389848721|ref|YP_006350958.1| - 4.4e-17 61.8 0.4 7.3e-17 61.1 0.4 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_S8 PF00082.22 gi|389848722|ref|YP_006350959.1| - 1.9e-46 158.7 12.3 1.9e-46 158.7 12.3 2.2 2 0 0 2 2 2 1 Subtilase family DUF4625 PF15418.6 gi|389848722|ref|YP_006350959.1| - 0.026 14.7 11.7 0.058 13.6 2.4 4.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4625) DUF5011 PF16403.5 gi|389848722|ref|YP_006350959.1| - 8.4 6.6 9.5 4.7 7.4 0.2 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) Rieske PF00355.26 gi|389848723|ref|YP_006350960.1| - 4.1e-20 71.5 0.0 8.1e-20 70.6 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 gi|389848723|ref|YP_006350960.1| - 1.2e-17 64.6 0.1 4e-17 62.9 0.1 1.9 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Ring_hydroxyl_B PF00866.18 gi|389848724|ref|YP_006350961.1| - 1e-41 142.3 3.9 1.2e-41 142.2 3.9 1.0 1 0 0 1 1 1 1 Ring hydroxylating beta subunit SnoaL_4 PF13577.6 gi|389848724|ref|YP_006350961.1| - 3.7e-05 23.8 1.2 8.6e-05 22.7 1.2 1.6 1 1 0 1 1 1 1 SnoaL-like domain Lyase_aromatic PF00221.19 gi|389848726|ref|YP_006350963.1| - 1.9e-173 577.4 1.6 3e-173 576.8 1.6 1.2 1 0 0 1 1 1 1 Aromatic amino acid lyase Cupin_2 PF07883.11 gi|389848727|ref|YP_006350964.1| - 2.5e-07 30.3 0.0 4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|389848727|ref|YP_006350964.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|389848727|ref|YP_006350964.1| - 0.007 16.0 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|389848727|ref|YP_006350964.1| - 0.032 13.9 0.1 0.06 13.1 0.1 1.4 1 1 1 2 2 2 0 Cupin Hemerythrin PF01814.23 gi|389848728|ref|YP_006350965.1| - 5.2e-19 69.2 14.5 5.2e-19 69.2 14.5 1.6 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 gi|389848728|ref|YP_006350965.1| - 6.8e-17 60.9 0.2 1.4e-16 59.9 0.2 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) DUF773 PF05600.12 gi|389848728|ref|YP_006350965.1| - 0.035 12.8 0.1 0.044 12.5 0.1 1.2 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 TetR_C_24 PF17932.1 gi|389848728|ref|YP_006350965.1| - 0.093 13.0 0.6 0.093 13.0 0.6 2.5 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain HMMR_N PF15905.5 gi|389848728|ref|YP_006350965.1| - 0.14 11.6 1.0 0.19 11.2 1.0 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal CorA PF01544.18 gi|389848728|ref|YP_006350965.1| - 0.2 10.9 5.0 0.49 9.7 4.2 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4618 PF15397.6 gi|389848728|ref|YP_006350965.1| - 0.24 10.8 2.7 0.28 10.6 0.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) SOAR PF16533.5 gi|389848728|ref|YP_006350965.1| - 0.27 11.2 2.1 2.5 8.1 0.2 2.3 2 0 0 2 2 2 0 STIM1 Orai1-activating region ABC_tran_CTD PF16326.5 gi|389848728|ref|YP_006350965.1| - 0.28 11.4 8.6 2.3 8.5 1.0 3.1 3 1 0 3 3 3 0 ABC transporter C-terminal domain MutS_III PF05192.18 gi|389848728|ref|YP_006350965.1| - 0.83 9.8 3.1 1.3 9.2 3.2 1.3 1 1 0 1 1 1 0 MutS domain III DUF615 PF04751.14 gi|389848728|ref|YP_006350965.1| - 1.1 9.2 3.8 4.7 7.2 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF615) APG6_N PF17675.1 gi|389848728|ref|YP_006350965.1| - 1.9 9.0 8.9 2 8.9 2.0 2.7 1 1 0 2 2 2 0 Apg6 coiled-coil region NAPRTase_N PF17767.1 gi|389848729|ref|YP_006350966.1| - 5.4e-35 120.5 0.1 1.7e-34 118.9 0.0 1.8 2 0 0 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase PF04095.16 gi|389848729|ref|YP_006350966.1| - 1.2e-10 41.4 0.1 2e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_C PF17956.1 gi|389848729|ref|YP_006350966.1| - 5.9e-08 33.1 0.2 7.1e-07 29.6 0.0 2.3 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain MFS_1 PF07690.16 gi|389848730|ref|YP_006350967.1| - 1.8e-38 132.4 46.8 2e-37 129.0 39.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389848730|ref|YP_006350967.1| - 0.00094 18.1 23.2 0.0021 17.0 8.1 2.1 1 1 0 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|389848730|ref|YP_006350967.1| - 0.0023 17.3 31.7 0.0072 15.7 29.8 2.1 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB Ost4 PF10215.9 gi|389848730|ref|YP_006350967.1| - 3.4 7.6 5.6 11 5.9 0.0 3.4 3 0 0 3 3 3 0 Oligosaccaryltransferase HTH_10 PF04967.12 gi|389848731|ref|YP_006350968.1| - 2e-14 53.1 0.1 3.5e-14 52.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|389848731|ref|YP_006350968.1| - 0.0023 17.5 0.0 0.0046 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389848731|ref|YP_006350968.1| - 0.003 17.4 0.1 0.0088 15.9 0.0 1.8 1 1 0 1 1 1 1 MarR family HTH_30 PF13556.6 gi|389848731|ref|YP_006350968.1| - 0.014 15.2 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389848731|ref|YP_006350968.1| - 0.022 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|389848731|ref|YP_006350968.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|389848731|ref|YP_006350968.1| - 0.067 13.2 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|389848731|ref|YP_006350968.1| - 0.12 11.9 0.1 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HSP20 PF00011.21 gi|389848732|ref|YP_006350969.1| - 1e-24 86.6 0.8 1.2e-24 86.3 0.8 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389848732|ref|YP_006350969.1| - 6.8e-14 51.2 0.1 1.1e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|389848732|ref|YP_006350969.1| - 0.0021 19.1 0.0 0.0028 18.6 0.0 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|389848732|ref|YP_006350969.1| - 0.0067 16.5 0.1 0.0093 16.0 0.1 1.3 1 0 0 1 1 1 1 GvpH FKBP26_C PF18046.1 gi|389848732|ref|YP_006350969.1| - 0.02 15.0 0.0 8 6.6 0.0 2.3 2 0 0 2 2 2 0 FKBP26_C-terminal PIH1_CS PF18201.1 gi|389848732|ref|YP_006350969.1| - 0.024 15.1 0.0 0.058 13.8 0.0 1.7 1 1 1 2 2 2 0 PIH1 CS-like domain Rx_N PF18052.1 gi|389848732|ref|YP_006350969.1| - 0.14 12.4 3.0 0.38 11.0 3.0 1.8 1 1 0 1 1 1 0 Rx N-terminal domain ABC_tran PF00005.27 gi|389848733|ref|YP_006350970.1| - 5.9e-30 104.6 0.0 7.8e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848733|ref|YP_006350970.1| - 1.8e-16 60.8 0.3 2.2e-11 44.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|389848733|ref|YP_006350970.1| - 0.01 15.6 0.0 1.2 8.8 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|389848733|ref|YP_006350970.1| - 0.014 15.9 0.9 0.021 15.3 0.4 1.5 1 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|389848733|ref|YP_006350970.1| - 0.016 15.7 0.0 0.074 13.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|389848733|ref|YP_006350970.1| - 0.03 14.0 0.1 0.04 13.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|389848733|ref|YP_006350970.1| - 0.035 12.8 0.1 0.11 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|389848733|ref|YP_006350970.1| - 0.064 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|389848733|ref|YP_006350970.1| - 0.21 11.4 1.2 0.43 10.4 0.4 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF3562 PF12085.8 gi|389848733|ref|YP_006350970.1| - 1 9.0 3.1 9.2 6.0 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3562) Tmemb_14 PF03647.13 gi|389848735|ref|YP_006350972.1| - 0.017 15.8 4.9 0.023 15.4 4.9 1.1 1 0 0 1 1 1 0 Transmembrane proteins 14C DUF2101 PF09874.9 gi|389848735|ref|YP_006350972.1| - 0.018 14.8 3.4 0.019 14.7 3.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) DoxX_2 PF13564.6 gi|389848735|ref|YP_006350972.1| - 0.02 15.0 3.4 0.02 15.0 3.4 1.6 1 1 0 1 1 1 0 DoxX-like family DUF2157 PF09925.9 gi|389848735|ref|YP_006350972.1| - 0.74 9.6 7.4 0.57 10.0 0.3 2.7 2 1 1 3 3 3 0 Predicted membrane protein (DUF2157) AmiS_UreI PF02293.15 gi|389848735|ref|YP_006350972.1| - 0.76 9.8 8.5 1.9 8.5 8.5 1.9 1 1 0 1 1 1 0 AmiS/UreI family transporter DUF3487 PF11990.8 gi|389848735|ref|YP_006350972.1| - 4.7 7.1 7.3 0.55 10.1 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF4407 PF14362.6 gi|389848736|ref|YP_006350973.1| - 0.2 11.0 0.5 0.26 10.6 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2207 PF09972.9 gi|389848736|ref|YP_006350973.1| - 0.24 10.1 0.1 13 4.4 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) EamA PF00892.20 gi|389848737|ref|YP_006350974.1| - 2.5e-33 115.1 35.2 2.1e-21 76.5 10.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family Nuc_sug_transp PF04142.15 gi|389848737|ref|YP_006350974.1| - 0.011 14.9 3.0 0.053 12.7 0.0 2.5 1 1 1 2 2 2 0 Nucleotide-sugar transporter DUF1724 PF08350.10 gi|389848738|ref|YP_006350975.1| - 2.1e-07 31.0 0.0 4.1e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|389848738|ref|YP_006350975.1| - 1.3e-05 25.0 0.1 0.00027 20.7 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389848738|ref|YP_006350975.1| - 1.8e-05 24.5 0.2 4.5e-05 23.3 0.2 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389848738|ref|YP_006350975.1| - 0.00023 21.0 0.0 0.00063 19.6 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389848738|ref|YP_006350975.1| - 0.00056 19.8 0.1 0.0015 18.5 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|389848738|ref|YP_006350975.1| - 0.0043 16.8 0.3 0.017 14.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389848738|ref|YP_006350975.1| - 0.019 15.0 0.6 11 6.2 0.1 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|389848738|ref|YP_006350975.1| - 0.15 12.2 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_25 PF13649.6 gi|389848741|ref|YP_006350978.1| - 9.3e-16 58.3 0.0 1.5e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389848741|ref|YP_006350978.1| - 5e-15 55.9 0.0 7.8e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389848741|ref|YP_006350978.1| - 4.5e-11 42.9 0.0 6.9e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389848741|ref|YP_006350978.1| - 4.5e-10 39.5 0.0 5.3e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|389848741|ref|YP_006350978.1| - 7.4e-08 32.2 0.0 1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|389848741|ref|YP_006350978.1| - 3.9e-07 30.7 0.0 5.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|389848741|ref|YP_006350978.1| - 0.0037 16.2 0.0 0.0046 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.14 gi|389848741|ref|YP_006350978.1| - 0.01 15.2 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_24 PF13578.6 gi|389848741|ref|YP_006350978.1| - 0.029 15.4 0.0 0.054 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain HTH_IclR PF09339.10 gi|389848743|ref|YP_006350980.1| - 5.2e-07 29.4 0.0 1.4e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389848743|ref|YP_006350980.1| - 0.00011 22.0 0.0 0.00034 20.5 0.0 1.9 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389848743|ref|YP_006350980.1| - 0.00045 20.1 0.2 0.0014 18.4 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389848743|ref|YP_006350980.1| - 0.0031 17.0 0.0 0.0059 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Binary_toxB PF03495.14 gi|389848743|ref|YP_006350980.1| - 0.0042 17.2 1.7 0.0042 17.2 1.7 4.2 2 1 2 5 5 5 2 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain HTH_5 PF01022.20 gi|389848743|ref|YP_006350980.1| - 0.01 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_31 PF13560.6 gi|389848743|ref|YP_006350980.1| - 0.066 13.6 0.1 0.22 11.9 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848743|ref|YP_006350980.1| - 0.09 12.8 0.1 0.24 11.4 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Orthoreo_P10 PF07204.11 gi|389848743|ref|YP_006350980.1| - 0.22 11.5 0.1 5.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Orthoreovirus membrane fusion protein p10 DUF11 PF01345.18 gi|389848744|ref|YP_006350981.1| - 3.1e-05 24.2 9.5 3.6e-05 24.0 1.4 3.9 2 2 0 2 2 2 1 Domain of unknown function DUF11 ASH PF15780.5 gi|389848744|ref|YP_006350981.1| - 7.9e-05 22.8 1.5 0.0047 17.1 0.3 2.6 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin CARDB PF07705.11 gi|389848744|ref|YP_006350981.1| - 0.00027 21.1 8.9 0.0054 17.0 0.2 3.6 3 1 1 4 4 4 2 CARDB NPCBM_assoc PF10633.9 gi|389848744|ref|YP_006350981.1| - 0.099 12.9 8.7 0.9 9.8 0.2 4.3 3 2 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.12 gi|389848744|ref|YP_006350981.1| - 0.17 12.0 0.6 3.7 7.6 0.0 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF916) ABC_tran PF00005.27 gi|389848745|ref|YP_006350982.1| - 5.5e-33 114.4 0.0 8.4e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|389848745|ref|YP_006350982.1| - 3.4e-06 26.7 0.2 0.00021 20.8 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|389848745|ref|YP_006350982.1| - 1.1e-05 25.4 0.0 0.0011 18.9 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389848745|ref|YP_006350982.1| - 7.9e-05 22.3 0.1 0.00014 21.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|389848745|ref|YP_006350982.1| - 0.0003 21.0 0.0 0.0011 19.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389848745|ref|YP_006350982.1| - 0.00048 20.1 0.0 0.00076 19.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|389848745|ref|YP_006350982.1| - 0.0005 20.6 0.1 0.00097 19.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389848745|ref|YP_006350982.1| - 0.0011 19.2 0.6 0.0068 16.7 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|389848745|ref|YP_006350982.1| - 0.005 16.4 0.1 0.61 9.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|389848745|ref|YP_006350982.1| - 0.0078 16.3 1.5 0.02 15.0 0.4 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|389848745|ref|YP_006350982.1| - 0.0091 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|389848745|ref|YP_006350982.1| - 0.011 16.1 0.3 0.017 15.5 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|389848745|ref|YP_006350982.1| - 0.027 14.2 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|389848745|ref|YP_006350982.1| - 0.047 14.2 0.1 0.19 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|389848745|ref|YP_006350982.1| - 0.049 13.4 0.2 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|389848745|ref|YP_006350982.1| - 0.073 13.3 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389848745|ref|YP_006350982.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|389848745|ref|YP_006350982.1| - 0.19 11.3 1.3 0.57 9.8 0.0 2.3 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain MacB_PCD PF12704.7 gi|389848746|ref|YP_006350983.1| - 3.1e-15 57.0 4.8 3.1e-15 57.0 4.8 2.3 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389848746|ref|YP_006350983.1| - 2e-12 47.4 4.9 7.2e-12 45.6 1.5 2.7 3 0 0 3 3 3 1 FtsX-like permease family DUF2190 PF09956.9 gi|389848746|ref|YP_006350983.1| - 0.13 12.7 0.1 0.13 12.7 0.1 2.3 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2190) MacB_PCD PF12704.7 gi|389848747|ref|YP_006350984.1| - 5.1e-15 56.4 1.5 5.1e-15 56.4 1.5 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389848747|ref|YP_006350984.1| - 2.9e-12 46.9 2.6 2.9e-12 46.9 2.6 2.5 3 0 0 3 3 3 1 FtsX-like permease family GrpE PF01025.19 gi|389848747|ref|YP_006350984.1| - 0.096 12.3 0.0 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 GrpE PQQ_2 PF13360.6 gi|389848748|ref|YP_006350985.1| - 9.6e-27 94.1 6.7 4.8e-18 65.6 2.6 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|389848748|ref|YP_006350985.1| - 3.3e-17 61.5 3.9 0.015 15.2 0.1 6.0 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389848748|ref|YP_006350985.1| - 1.6e-16 60.2 14.4 0.00025 21.4 0.1 6.3 6 0 0 6 6 6 6 PQQ-like domain DUF4364 PF14277.6 gi|389848749|ref|YP_006350986.1| - 0.0077 16.0 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1887 PF09002.11 gi|389848749|ref|YP_006350986.1| - 0.025 13.3 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|389848749|ref|YP_006350986.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) AcylCoA_DH_N PF12418.8 gi|389848749|ref|YP_006350986.1| - 0.31 11.1 1.2 4.8 7.3 0.0 2.9 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase N terminal tRNA-synt_2b PF00587.25 gi|389848750|ref|YP_006350987.1| - 3e-39 134.8 0.0 5.4e-39 134.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|389848750|ref|YP_006350987.1| - 1.6e-17 63.4 0.5 4.4e-17 62.0 0.5 1.8 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.21 gi|389848750|ref|YP_006350987.1| - 3.4e-14 52.6 0.3 7.1e-14 51.6 0.3 1.5 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|389848750|ref|YP_006350987.1| - 6.4e-13 48.6 0.0 1.2e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4270 PF14092.6 gi|389848750|ref|YP_006350987.1| - 0.24 10.5 0.0 0.36 9.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4270) ComA PF02679.15 gi|389848751|ref|YP_006350988.1| - 3.7e-85 285.3 0.1 4.2e-85 285.1 0.1 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Hydantoinase_A PF01968.18 gi|389848751|ref|YP_006350988.1| - 0.033 13.4 0.0 0.049 12.9 0.0 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase Vinculin PF01044.19 gi|389848751|ref|YP_006350988.1| - 0.046 12.0 0.1 0.057 11.6 0.1 1.0 1 0 0 1 1 1 0 Vinculin family MmgE_PrpD PF03972.14 gi|389848752|ref|YP_006350989.1| - 9.9e-122 406.6 5.9 1.1e-121 406.5 5.9 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Thiamine_BP PF01910.17 gi|389848753|ref|YP_006350990.1| - 1.7e-16 59.9 1.8 1.9e-16 59.7 1.8 1.0 1 0 0 1 1 1 1 Thiamine-binding protein PALP PF00291.25 gi|389848754|ref|YP_006350991.1| - 2.2e-62 211.1 0.5 2.5e-62 211.0 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|389848754|ref|YP_006350991.1| - 0.055 13.4 0.2 2.4 8.1 0.1 2.6 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Mrr_cat PF04471.12 gi|389848755|ref|YP_006350992.1| - 2.4e-26 92.0 0.0 4.7e-26 91.1 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease zinc_ribbon_2 PF13240.6 gi|389848755|ref|YP_006350992.1| - 0.0012 18.5 4.1 0.0032 17.1 4.1 1.7 1 0 0 1 1 1 1 zinc-ribbon domain TackOD1 PF18551.1 gi|389848755|ref|YP_006350992.1| - 0.0086 15.8 2.6 0.013 15.2 2.6 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DZR PF12773.7 gi|389848755|ref|YP_006350992.1| - 0.058 13.4 3.9 0.13 12.3 3.9 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-UDP PF14569.6 gi|389848755|ref|YP_006350992.1| - 0.15 12.2 3.8 0.49 10.5 3.9 1.8 1 1 0 1 1 1 0 Zinc-binding RING-finger HTH_10 PF04967.12 gi|389848759|ref|YP_006350996.1| - 1.9e-11 43.6 0.0 3e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389848759|ref|YP_006350996.1| - 0.0014 18.3 0.0 0.0095 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|389848759|ref|YP_006350996.1| - 0.024 14.2 0.1 0.16 11.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389848759|ref|YP_006350996.1| - 0.075 12.9 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_30 PF13556.6 gi|389848759|ref|YP_006350996.1| - 0.17 11.7 0.0 0.47 10.3 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain FMN_dh PF01070.18 gi|389848760|ref|YP_006350997.1| - 1.5e-27 96.6 8.5 9.5e-25 87.3 8.5 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|389848760|ref|YP_006350997.1| - 3.5e-06 26.3 9.3 0.0023 17.0 0.3 4.1 4 1 1 5 5 4 3 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|389848760|ref|YP_006350997.1| - 8.3e-06 25.2 2.7 8.3e-06 25.2 2.7 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase DUF5132 PF17195.4 gi|389848760|ref|YP_006350997.1| - 0.054 13.6 0.3 2.9 8.1 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF5132) GP67 PF17634.2 gi|389848760|ref|YP_006350997.1| - 0.28 11.6 2.1 0.29 11.6 0.1 2.0 2 0 0 2 2 2 0 Gene product 67 TFIIB PF00382.19 gi|389848761|ref|YP_006350998.1| - 1.9e-36 123.9 0.0 1.6e-18 66.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.19 gi|389848761|ref|YP_006350998.1| - 0.00026 21.1 0.0 0.2 11.8 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|389848761|ref|YP_006350998.1| - 0.0011 18.5 2.6 0.0059 16.1 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 TF_Zn_Ribbon PF08271.12 gi|389848761|ref|YP_006350998.1| - 0.0041 16.6 0.1 0.0092 15.5 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.6 gi|389848761|ref|YP_006350998.1| - 0.0073 16.1 0.1 0.069 13.0 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389848761|ref|YP_006350998.1| - 0.011 15.3 0.0 0.07 12.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|389848761|ref|YP_006350998.1| - 0.013 15.2 0.5 0.045 13.4 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4648 PF15505.6 gi|389848761|ref|YP_006350998.1| - 0.033 15.0 0.4 0.38 11.7 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4648) HTH_Mga PF08280.11 gi|389848761|ref|YP_006350998.1| - 0.18 11.9 0.1 0.31 11.1 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain BAT PF15915.5 gi|389848763|ref|YP_006351000.1| - 6.9e-42 143.0 1.7 6.9e-42 143.0 1.7 3.4 3 1 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|389848763|ref|YP_006351000.1| - 1.2e-30 106.7 0.2 2.4e-11 44.1 0.0 3.4 3 0 0 3 3 3 3 GAF domain HTH_10 PF04967.12 gi|389848763|ref|YP_006351000.1| - 7.2e-21 73.7 0.0 2.1e-20 72.3 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|389848763|ref|YP_006351000.1| - 2.3e-14 53.5 0.2 8.9e-14 51.6 0.2 2.1 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|389848763|ref|YP_006351000.1| - 5.2e-10 39.8 0.6 0.00022 21.6 0.0 3.7 4 0 0 4 4 4 2 GAF domain GAF PF01590.26 gi|389848763|ref|YP_006351000.1| - 3.3e-08 34.2 0.6 0.065 13.9 0.0 3.9 4 0 0 4 4 4 3 GAF domain Sigma70_r4 PF04545.16 gi|389848763|ref|YP_006351000.1| - 0.025 14.1 0.1 0.063 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 FleQ PF06490.11 gi|389848763|ref|YP_006351000.1| - 0.036 14.4 0.3 0.29 11.5 0.0 2.7 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ SatD PF16264.5 gi|389848763|ref|YP_006351000.1| - 0.042 13.5 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 SatD family (SatD) Phasin PF05597.11 gi|389848763|ref|YP_006351000.1| - 0.069 13.1 0.7 1.3 9.0 0.0 3.0 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HTH_24 PF13412.6 gi|389848763|ref|YP_006351000.1| - 0.073 12.6 0.0 0.22 11.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2116 PF09889.9 gi|389848764|ref|YP_006351001.1| - 0.0028 17.6 0.9 0.15 12.1 0.4 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FLZ PF04570.14 gi|389848764|ref|YP_006351001.1| - 0.0048 16.3 0.8 0.021 14.3 0.2 1.9 2 0 0 2 2 2 1 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|389848764|ref|YP_006351001.1| - 0.025 14.7 3.9 0.025 14.7 3.9 1.7 1 1 0 1 1 1 0 YHS domain zf-FCS PF06467.14 gi|389848764|ref|YP_006351001.1| - 0.033 14.1 5.1 0.25 11.3 5.1 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif YacG PF03884.14 gi|389848764|ref|YP_006351001.1| - 2.2 8.1 6.1 1.5 8.6 1.1 2.1 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Peptidase_S8 PF00082.22 gi|389848765|ref|YP_006351002.1| - 3.1e-51 174.4 9.4 6.4e-51 173.4 9.4 1.5 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.21 gi|389848765|ref|YP_006351002.1| - 0.0011 19.3 0.0 0.074 13.4 0.0 2.8 2 0 0 2 2 2 1 Fibronectin type III domain Pur_ac_phosph_N PF16656.5 gi|389848765|ref|YP_006351002.1| - 0.0049 17.4 3.5 0.059 13.9 1.5 2.7 1 1 1 2 2 2 1 Purple acid Phosphatase, N-terminal domain CBM_4_9 PF02018.17 gi|389848765|ref|YP_006351002.1| - 0.0094 16.2 0.4 0.21 11.8 0.2 2.8 3 0 0 3 3 3 1 Carbohydrate binding domain DUF4225 PF13988.6 gi|389848765|ref|YP_006351002.1| - 0.015 14.9 0.2 0.034 13.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) TRAM PF01938.20 gi|389848766|ref|YP_006351003.1| - 6.6e-16 58.1 1.0 1.1e-15 57.4 1.0 1.4 1 0 0 1 1 1 1 TRAM domain Nramp PF01566.18 gi|389848767|ref|YP_006351004.1| - 4.7e-66 223.2 34.2 7.8e-66 222.5 34.2 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein SH3_2 PF07653.17 gi|389848768|ref|YP_006351005.1| - 1.3e-16 60.0 0.9 4.4e-10 39.1 0.2 2.2 2 0 0 2 2 2 2 Variant SH3 domain SH3_9 PF14604.6 gi|389848768|ref|YP_006351005.1| - 1.6e-09 37.5 6.1 1.7e-06 27.8 0.7 2.4 2 1 0 2 2 2 2 Variant SH3 domain SH3_1 PF00018.28 gi|389848768|ref|YP_006351005.1| - 9.4e-09 34.8 2.8 0.00062 19.3 0.7 2.2 2 0 0 2 2 2 2 SH3 domain SH3_3 PF08239.11 gi|389848768|ref|YP_006351005.1| - 2.1e-05 24.7 5.9 0.0072 16.6 0.8 2.3 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_16 PF18348.1 gi|389848768|ref|YP_006351005.1| - 0.08 12.8 6.6 1.7 8.5 1.8 2.9 3 1 0 3 3 3 0 Bacterial dipeptidyl-peptidase Sh3 domain SH3_4 PF06347.13 gi|389848768|ref|YP_006351005.1| - 0.16 11.8 11.2 0.6 10.0 0.3 2.7 1 1 2 3 3 3 0 Bacterial SH3 domain DUF1604 PF07713.13 gi|389848768|ref|YP_006351005.1| - 0.19 11.6 0.2 0.7 9.7 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1604) DDE_Tnp_IS240 PF13610.6 gi|389848769|ref|YP_006351006.1| - 1.7e-28 99.6 0.0 2.3e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 DDE domain CoA_trans PF01144.23 gi|389848774|ref|YP_006351011.1| - 8.4e-35 120.1 4.2 7e-32 110.6 0.2 2.8 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|389848774|ref|YP_006351011.1| - 5.9e-05 21.6 0.1 9.3e-05 20.9 0.1 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Hydantoinase_B PF02538.14 gi|389848775|ref|YP_006351012.1| - 3.6e-156 520.6 0.1 4.2e-156 520.4 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Sigma70_ner PF04546.13 gi|389848775|ref|YP_006351012.1| - 0.27 11.1 1.0 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, non-essential region Hydantoinase_A PF01968.18 gi|389848776|ref|YP_006351013.1| - 2.6e-94 315.7 3.4 2.9e-93 312.3 0.1 2.7 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|389848776|ref|YP_006351013.1| - 1.9e-47 161.3 0.8 5.7e-45 153.2 0.4 2.7 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|389848776|ref|YP_006351013.1| - 0.0044 17.4 0.5 2.4 8.6 0.2 3.0 3 1 0 3 3 3 2 Cell division protein FtsA ROK PF00480.20 gi|389848776|ref|YP_006351013.1| - 0.0079 15.7 0.1 0.093 12.2 0.1 2.2 2 0 0 2 2 2 1 ROK family MutL PF13941.6 gi|389848776|ref|YP_006351013.1| - 0.18 10.3 2.0 0.69 8.4 0.2 2.1 2 0 0 2 2 2 0 MutL protein SBP_bac_5 PF00496.22 gi|389848777|ref|YP_006351014.1| - 3.9e-73 246.6 9.1 5e-73 246.2 9.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389848777|ref|YP_006351014.1| - 0.0018 18.0 0.4 0.0034 17.1 0.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|389848778|ref|YP_006351015.1| - 2.9e-36 124.9 8.6 2.9e-36 124.9 8.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848779|ref|YP_006351016.1| - 2.7e-25 89.2 7.4 2.7e-25 89.2 7.4 1.8 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389848779|ref|YP_006351016.1| - 1.2e-10 41.2 0.1 1.2e-10 41.2 0.1 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|389848780|ref|YP_006351017.1| - 8.6e-27 94.3 0.0 1.2e-26 93.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848780|ref|YP_006351017.1| - 1.7e-17 63.7 0.0 2.9e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|389848780|ref|YP_006351017.1| - 0.00023 20.7 0.0 0.00061 19.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|389848780|ref|YP_006351017.1| - 0.00032 20.3 0.0 0.0018 17.9 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_21 PF13304.6 gi|389848780|ref|YP_006351017.1| - 0.0012 18.8 0.2 0.0028 17.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Sigma54_activat PF00158.26 gi|389848780|ref|YP_006351017.1| - 0.012 15.3 0.0 0.031 14.0 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.16 gi|389848780|ref|YP_006351017.1| - 0.016 14.5 0.1 0.025 13.9 0.1 1.2 1 0 0 1 1 1 0 AIG1 family AAA PF00004.29 gi|389848780|ref|YP_006351017.1| - 0.024 15.1 0.0 0.044 14.2 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|389848780|ref|YP_006351017.1| - 0.04 14.2 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389848780|ref|YP_006351017.1| - 0.052 13.9 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|389848780|ref|YP_006351017.1| - 0.074 12.4 0.0 0.23 10.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|389848780|ref|YP_006351017.1| - 0.082 12.8 0.1 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ATP-synt_ab PF00006.25 gi|389848780|ref|YP_006351017.1| - 0.084 12.5 0.2 0.21 11.2 0.2 1.8 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|389848780|ref|YP_006351017.1| - 0.098 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|389848780|ref|YP_006351017.1| - 0.1 13.0 0.0 0.36 11.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase ABC_tran PF00005.27 gi|389848781|ref|YP_006351018.1| - 1.1e-33 116.6 0.0 1.7e-33 116.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848781|ref|YP_006351018.1| - 3.7e-16 59.4 0.2 6.4e-16 58.6 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389848781|ref|YP_006351018.1| - 6.6e-09 36.0 0.3 1.9e-05 24.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848781|ref|YP_006351018.1| - 4.1e-08 32.9 0.1 2e-07 30.7 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389848781|ref|YP_006351018.1| - 5.1e-05 23.6 0.2 0.00032 21.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848781|ref|YP_006351018.1| - 0.00021 21.7 0.2 0.00045 20.7 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|389848781|ref|YP_006351018.1| - 0.00092 19.6 0.1 0.0099 16.3 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|389848781|ref|YP_006351018.1| - 0.0023 17.5 0.2 1.1 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|389848781|ref|YP_006351018.1| - 0.003 17.3 0.1 0.0053 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|389848781|ref|YP_006351018.1| - 0.0065 16.5 0.2 0.39 10.7 0.1 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|389848781|ref|YP_006351018.1| - 0.032 13.9 0.0 0.05 13.2 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|389848781|ref|YP_006351018.1| - 0.033 13.6 0.1 4.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|389848781|ref|YP_006351018.1| - 0.034 13.9 0.2 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain tRNA_lig_kinase PF08303.11 gi|389848781|ref|YP_006351018.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain SbcCD_C PF13558.6 gi|389848781|ref|YP_006351018.1| - 0.073 13.3 0.1 0.79 10.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|389848781|ref|YP_006351018.1| - 0.073 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|389848781|ref|YP_006351018.1| - 0.078 12.9 0.2 0.14 12.0 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|389848781|ref|YP_006351018.1| - 0.13 12.8 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|389848781|ref|YP_006351018.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389848781|ref|YP_006351018.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATPase PF06745.13 gi|389848781|ref|YP_006351018.1| - 0.19 11.1 0.3 0.39 10.0 0.1 1.6 2 0 0 2 2 2 0 KaiC AAA_13 PF13166.6 gi|389848781|ref|YP_006351018.1| - 0.55 8.8 1.7 0.9 8.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Hydantoinase_A PF01968.18 gi|389848782|ref|YP_006351019.1| - 1.4e-102 342.9 1.1 2e-99 332.6 0.0 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|389848782|ref|YP_006351019.1| - 2.5e-49 167.4 0.3 5.9e-49 166.2 0.3 1.7 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|389848782|ref|YP_006351019.1| - 0.014 14.9 0.0 1.4 8.4 0.1 2.8 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Pilus_CpaD PF09476.10 gi|389848782|ref|YP_006351019.1| - 0.03 14.1 0.1 0.08 12.7 0.0 1.8 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) MutL PF13941.6 gi|389848782|ref|YP_006351019.1| - 1.6 7.2 3.9 4 5.9 1.1 2.2 2 0 0 2 2 2 0 MutL protein Hydantoinase_B PF02538.14 gi|389848783|ref|YP_006351020.1| - 3e-158 527.5 0.4 3.5e-158 527.2 0.4 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Cupin_2 PF07883.11 gi|389848784|ref|YP_006351021.1| - 3.5e-13 49.0 0.2 4.7e-13 48.6 0.2 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|389848784|ref|YP_006351021.1| - 4.1e-05 23.5 0.0 5.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|389848784|ref|YP_006351021.1| - 0.00089 18.9 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|389848784|ref|YP_006351021.1| - 0.0014 18.2 0.1 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HgmA PF04209.13 gi|389848784|ref|YP_006351021.1| - 0.0093 14.7 0.0 0.0094 14.7 0.0 1.0 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase ARD PF03079.14 gi|389848784|ref|YP_006351021.1| - 0.017 15.3 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family CENP-C_C PF11699.8 gi|389848784|ref|YP_006351021.1| - 0.15 12.3 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like HTH_AsnC-type PF13404.6 gi|389848785|ref|YP_006351022.1| - 1.8e-14 53.2 1.6 3.2e-14 52.5 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389848785|ref|YP_006351022.1| - 3e-13 49.1 0.4 3e-13 49.1 0.4 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|389848785|ref|YP_006351022.1| - 1.9e-09 37.3 0.1 3.5e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|389848785|ref|YP_006351022.1| - 0.00058 19.8 0.1 0.0011 18.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389848785|ref|YP_006351022.1| - 0.00083 19.4 0.1 0.0015 18.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848785|ref|YP_006351022.1| - 0.00095 19.1 0.6 0.0022 17.9 0.6 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|389848785|ref|YP_006351022.1| - 0.01 15.7 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|389848785|ref|YP_006351022.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|389848785|ref|YP_006351022.1| - 0.045 13.6 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|389848785|ref|YP_006351022.1| - 0.046 13.6 0.4 0.12 12.3 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|389848785|ref|YP_006351022.1| - 0.084 12.7 0.5 0.25 11.2 0.5 1.8 1 1 0 1 1 1 0 Homeodomain-like domain AHSA1 PF08327.11 gi|389848786|ref|YP_006351023.1| - 8.6e-29 100.3 0.0 1e-28 100.0 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|389848786|ref|YP_006351023.1| - 2e-12 47.6 0.2 2.6e-12 47.2 0.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|389848786|ref|YP_006351023.1| - 0.0058 16.8 0.0 0.0082 16.3 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.9 gi|389848786|ref|YP_006351023.1| - 0.011 15.9 0.4 0.024 14.8 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) HTH_20 PF12840.7 gi|389848787|ref|YP_006351024.1| - 6.7e-18 64.5 0.3 6.7e-18 64.5 0.3 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389848787|ref|YP_006351024.1| - 2.2e-12 46.6 0.0 3.3e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389848787|ref|YP_006351024.1| - 5.4e-07 29.4 0.2 1e-06 28.5 0.1 1.5 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389848787|ref|YP_006351024.1| - 0.00013 21.9 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|389848787|ref|YP_006351024.1| - 0.0005 20.0 0.0 0.0012 18.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389848787|ref|YP_006351024.1| - 0.00056 19.6 0.4 0.0011 18.7 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389848787|ref|YP_006351024.1| - 0.0098 16.1 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|389848787|ref|YP_006351024.1| - 0.013 15.2 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|389848787|ref|YP_006351024.1| - 0.014 15.8 0.1 0.023 15.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|389848787|ref|YP_006351024.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|389848787|ref|YP_006351024.1| - 0.021 14.9 4.6 0.17 12.0 1.9 2.8 1 1 1 2 2 2 0 DprA winged helix domain Rrf2 PF02082.20 gi|389848787|ref|YP_006351024.1| - 0.023 15.0 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|389848787|ref|YP_006351024.1| - 0.025 14.1 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_47 PF16221.5 gi|389848787|ref|YP_006351024.1| - 0.05 13.2 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix ArsR PF09824.9 gi|389848787|ref|YP_006351024.1| - 0.2 11.3 0.0 0.25 10.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Abhydrolase_6 PF12697.7 gi|389848788|ref|YP_006351025.1| - 1.8e-19 71.3 10.6 2e-19 71.1 10.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848788|ref|YP_006351025.1| - 1.8e-07 31.1 0.0 2.7e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389848788|ref|YP_006351025.1| - 0.0031 16.8 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|389848788|ref|YP_006351025.1| - 0.018 14.8 0.0 0.033 13.9 0.0 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|389848788|ref|YP_006351025.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein ADH_N PF08240.12 gi|389848789|ref|YP_006351026.1| - 3.6e-22 78.3 0.5 5.6e-22 77.7 0.5 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|389848789|ref|YP_006351026.1| - 5.3e-22 78.2 0.0 1e-21 77.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389848789|ref|YP_006351026.1| - 0.00082 20.4 0.0 0.0021 19.1 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|389848789|ref|YP_006351026.1| - 0.028 13.7 0.3 0.045 13.0 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ADH_N_2 PF16884.5 gi|389848789|ref|YP_006351026.1| - 0.19 11.6 0.1 0.44 10.5 0.1 1.6 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase VanZ PF04892.12 gi|389848790|ref|YP_006351027.1| - 0.00077 20.1 0.1 0.00098 19.8 0.1 1.2 1 1 0 1 1 1 1 VanZ like family Transgly_assoc PF04226.13 gi|389848790|ref|YP_006351027.1| - 0.013 15.8 0.5 2.1 8.7 0.0 2.4 2 0 0 2 2 2 0 Transglycosylase associated protein DUF2279 PF10043.9 gi|389848790|ref|YP_006351027.1| - 0.17 12.7 0.0 0.25 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) GvpG PF05120.12 gi|389848791|ref|YP_006351028.1| - 0.085 12.9 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein G VanZ PF04892.12 gi|389848792|ref|YP_006351029.1| - 7.8e-06 26.6 0.0 9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 VanZ like family DUF1440 PF07274.12 gi|389848792|ref|YP_006351029.1| - 0.028 14.8 0.0 0.034 14.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) ArsP_1 PF03773.13 gi|389848793|ref|YP_006351030.1| - 3.8e-71 239.6 10.1 5e-71 239.2 10.1 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|389848793|ref|YP_006351030.1| - 6.6e-07 29.3 0.1 1.1e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|389848793|ref|YP_006351030.1| - 0.0032 17.4 0.1 0.0053 16.7 0.1 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|389848793|ref|YP_006351030.1| - 0.031 14.3 0.1 0.031 14.3 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) HisKA_4TM PF16926.5 gi|389848794|ref|YP_006351031.1| - 2.2e-15 56.6 1.0 4.9e-15 55.5 1.0 1.6 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|389848794|ref|YP_006351031.1| - 3.5e-13 50.0 0.0 7e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389848794|ref|YP_006351031.1| - 0.00028 20.8 0.1 0.00056 19.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|389848794|ref|YP_006351031.1| - 0.00073 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|389848794|ref|YP_006351031.1| - 0.00083 19.4 0.6 0.0017 18.4 0.6 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|389848794|ref|YP_006351031.1| - 0.15 11.8 0.8 0.58 9.9 0.1 2.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain AA_permease_2 PF13520.6 gi|389848795|ref|YP_006351032.1| - 8.9e-08 31.4 8.8 2.4e-07 30.0 8.8 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389848795|ref|YP_006351032.1| - 0.0076 14.9 8.6 0.019 13.6 8.6 1.7 1 1 0 1 1 1 1 Amino acid permease SAYSvFN PF10260.9 gi|389848795|ref|YP_006351032.1| - 0.43 10.5 0.0 0.43 10.5 0.0 2.4 3 0 0 3 3 3 0 Uncharacterized conserved domain (SAYSvFN) AA_permease_2 PF13520.6 gi|389848796|ref|YP_006351033.1| - 9.5e-33 113.6 41.9 1.2e-32 113.3 41.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389848796|ref|YP_006351033.1| - 1.1e-18 67.1 38.6 1.5e-18 66.6 38.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|389848796|ref|YP_006351033.1| - 0.00048 20.1 4.4 0.0031 17.5 4.4 2.5 1 0 0 1 1 1 1 C-terminus of AA_permease Usp PF00582.26 gi|389848796|ref|YP_006351033.1| - 0.0025 18.3 0.9 0.72 10.3 0.2 2.8 3 0 0 3 3 3 2 Universal stress protein family DUF1286 PF06939.11 gi|389848796|ref|YP_006351033.1| - 0.47 10.8 9.2 0.73 10.1 0.2 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1286) TrmB PF01978.19 gi|389848797|ref|YP_006351034.1| - 9.2e-07 28.7 0.2 1.2e-06 28.3 0.2 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|389848797|ref|YP_006351034.1| - 0.02 14.5 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sulfolobus_pRN PF05584.11 gi|389848797|ref|YP_006351034.1| - 0.14 12.2 0.3 0.17 11.9 0.3 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein adh_short_C2 PF13561.6 gi|389848798|ref|YP_006351035.1| - 2.2e-63 214.0 0.5 2.5e-63 213.8 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389848798|ref|YP_006351035.1| - 7.2e-59 198.5 0.2 8.5e-59 198.3 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389848798|ref|YP_006351035.1| - 5.2e-20 72.1 0.1 6.6e-20 71.8 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389848798|ref|YP_006351035.1| - 0.0047 16.4 0.1 0.0062 16.0 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family PurA PF04845.13 gi|389848798|ref|YP_006351035.1| - 0.088 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 PurA ssDNA and RNA-binding protein Phage_sheath_1C PF17482.2 gi|389848799|ref|YP_006351036.1| - 0.018 15.0 0.0 0.046 13.7 0.0 1.7 2 0 0 2 2 2 0 Phage tail sheath C-terminal domain MaoC_dehydratas PF01575.19 gi|389848800|ref|YP_006351037.1| - 8.2e-24 83.5 0.0 1.3e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389848800|ref|YP_006351037.1| - 6.7e-07 29.5 0.0 4.8e-06 26.7 0.0 2.2 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|389848800|ref|YP_006351037.1| - 0.011 16.1 0.1 0.026 14.9 0.1 1.8 1 0 0 1 1 1 0 Thioesterase superfamily 4HBT_3 PF13622.6 gi|389848800|ref|YP_006351037.1| - 0.11 12.8 0.4 0.47 10.7 0.1 2.1 2 0 0 2 2 2 0 Thioesterase-like superfamily Apolipoprotein PF01442.18 gi|389848802|ref|YP_006351039.1| - 0.00012 22.1 0.8 0.00021 21.2 0.5 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.10 gi|389848802|ref|YP_006351039.1| - 0.00048 20.4 5.3 0.003 17.8 0.3 2.6 2 1 0 2 2 2 1 Phasin protein Phasin PF05597.11 gi|389848802|ref|YP_006351039.1| - 0.004 17.2 0.8 0.0068 16.4 0.7 1.6 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Poxvirus_B22R PF04395.12 gi|389848802|ref|YP_006351039.1| - 0.0046 16.5 0.2 0.0071 15.9 0.2 1.2 1 0 0 1 1 1 1 Poxvirus B22R protein YkyA PF10368.9 gi|389848802|ref|YP_006351039.1| - 0.015 15.0 7.4 0.02 14.6 7.4 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF3347 PF11827.8 gi|389848802|ref|YP_006351039.1| - 0.016 15.4 2.9 0.021 15.0 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DKNYY PF13644.6 gi|389848802|ref|YP_006351039.1| - 0.024 15.4 0.2 0.029 15.2 0.2 1.2 1 0 0 1 1 1 0 DKNYY family Carbpep_Y_N PF05388.11 gi|389848802|ref|YP_006351039.1| - 0.048 14.2 2.2 0.11 13.0 2.2 1.7 1 1 0 1 1 1 0 Carboxypeptidase Y pro-peptide STG PF15809.5 gi|389848802|ref|YP_006351039.1| - 0.077 13.1 0.1 0.09 12.8 0.1 1.1 1 0 0 1 1 1 0 Simian taste bud-specific gene product family PhaP_Bmeg PF09602.10 gi|389848802|ref|YP_006351039.1| - 0.12 12.3 8.7 0.04 13.8 2.2 2.3 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) PMC2NT PF08066.12 gi|389848802|ref|YP_006351039.1| - 0.13 13.0 6.8 1.8 9.3 6.8 2.5 1 1 0 1 1 1 0 PMC2NT (NUC016) domain Tweety PF04906.13 gi|389848802|ref|YP_006351039.1| - 0.22 10.1 3.4 1.7 7.2 0.1 2.1 2 0 0 2 2 2 0 Tweety DUF2935 PF11155.8 gi|389848802|ref|YP_006351039.1| - 0.26 11.6 1.9 2.9 8.2 1.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) YtxH PF12732.7 gi|389848802|ref|YP_006351039.1| - 0.76 10.4 2.9 5.4 7.6 0.3 2.5 1 1 1 2 2 2 0 YtxH-like protein CNDH2_C PF16858.5 gi|389848802|ref|YP_006351039.1| - 1.6 8.5 7.6 1.9 8.3 7.6 1.0 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term Cor1 PF04803.12 gi|389848802|ref|YP_006351039.1| - 8.5 6.6 10.9 4.8 7.4 1.8 2.5 1 1 1 2 2 2 0 Cor1/Xlr/Xmr conserved region PHA_synth_III_E PF09712.10 gi|389848803|ref|YP_006351040.1| - 8.6e-07 28.3 6.7 1.3e-05 24.4 0.3 2.4 1 1 2 3 3 3 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.11 gi|389848803|ref|YP_006351040.1| - 0.006 16.6 3.3 0.0084 16.1 1.5 2.2 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF2199 PF09965.9 gi|389848803|ref|YP_006351040.1| - 0.0075 16.3 0.8 0.0097 16.0 0.1 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2199) DUF1874 PF08960.10 gi|389848803|ref|YP_006351040.1| - 0.028 14.6 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1874) FliD_C PF07195.12 gi|389848803|ref|YP_006351040.1| - 0.037 13.4 0.1 0.055 12.9 0.1 1.4 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF812 PF05667.11 gi|389848803|ref|YP_006351040.1| - 0.11 11.4 3.7 0.12 11.2 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) KCNQ_channel PF03520.14 gi|389848803|ref|YP_006351040.1| - 0.13 12.0 0.2 2.7 7.8 0.1 2.2 2 0 0 2 2 2 0 KCNQ voltage-gated potassium channel Sipho_Gp157 PF05565.11 gi|389848803|ref|YP_006351040.1| - 0.35 10.9 7.1 3.8 7.5 0.7 2.5 1 1 2 3 3 3 0 Siphovirus Gp157 BMFP PF04380.13 gi|389848803|ref|YP_006351040.1| - 1.1 9.8 7.7 0.38 11.3 3.9 2.1 2 0 0 2 2 2 0 Membrane fusogenic activity Abhydrolase_1 PF00561.20 gi|389848804|ref|YP_006351041.1| - 7.6e-26 91.3 0.0 1.2e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|389848804|ref|YP_006351041.1| - 1.7e-12 47.3 0.0 3e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|389848804|ref|YP_006351041.1| - 1.5e-09 37.5 0.0 5.4e-05 22.6 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF3141 PF11339.8 gi|389848804|ref|YP_006351041.1| - 1.1e-08 34.0 0.0 3.6e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) HHH_5 PF14520.6 gi|389848804|ref|YP_006351041.1| - 6.7e-08 33.0 0.0 1.3e-07 32.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain PHB_depo_C PF06850.11 gi|389848804|ref|YP_006351041.1| - 1.6e-06 27.8 0.0 2.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DLH PF01738.18 gi|389848804|ref|YP_006351041.1| - 3.2e-05 23.6 0.0 0.0016 18.0 0.0 2.7 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|389848804|ref|YP_006351041.1| - 0.00014 22.5 0.0 0.00026 21.7 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cdd1 PF11731.8 gi|389848804|ref|YP_006351041.1| - 0.00037 20.7 0.0 0.00082 19.6 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|389848804|ref|YP_006351041.1| - 0.0045 17.2 0.1 0.046 14.0 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) LIP PF03583.14 gi|389848804|ref|YP_006351041.1| - 0.0063 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Secretory lipase BAAT_C PF08840.11 gi|389848804|ref|YP_006351041.1| - 0.0065 16.4 0.0 0.53 10.2 0.0 2.3 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.13 gi|389848804|ref|YP_006351041.1| - 0.011 15.4 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) HHH PF00633.23 gi|389848804|ref|YP_006351041.1| - 0.022 14.6 0.2 0.086 12.8 0.1 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif Abhydrolase_5 PF12695.7 gi|389848804|ref|YP_006351041.1| - 0.051 13.3 0.0 7.2 6.3 0.0 2.4 2 1 0 2 2 2 0 Alpha/beta hydrolase family Gp-FAR-1 PF05823.12 gi|389848804|ref|YP_006351041.1| - 0.059 13.7 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Usp PF00582.26 gi|389848805|ref|YP_006351042.1| - 4.6e-31 108.2 0.0 5.1e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Methyltransf_31 PF13847.6 gi|389848805|ref|YP_006351042.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain VAPB_antitox PF02697.14 gi|389848807|ref|YP_006351044.1| - 0.00054 20.7 0.2 0.00061 20.5 0.2 1.1 1 0 0 1 1 1 1 Putative antitoxin BRE PF06113.12 gi|389848807|ref|YP_006351044.1| - 0.16 10.8 0.0 0.17 10.7 0.0 1.0 1 0 0 1 1 1 0 Brain and reproductive organ-expressed protein (BRE) ADH_zinc_N_2 PF13602.6 gi|389848809|ref|YP_006351046.1| - 1.4e-26 94.2 0.0 2.4e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|389848809|ref|YP_006351046.1| - 3.5e-16 59.4 0.4 1.3e-15 57.5 0.0 2.1 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389848809|ref|YP_006351046.1| - 1.1e-08 34.9 0.3 9.2e-08 31.9 0.0 2.3 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|389848809|ref|YP_006351046.1| - 0.00028 20.3 1.0 0.00049 19.5 1.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_N_2 PF16884.5 gi|389848809|ref|YP_006351046.1| - 0.014 15.2 0.1 0.072 13.0 0.1 2.2 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase Eno-Rase_NADH_b PF12242.8 gi|389848809|ref|YP_006351046.1| - 0.11 12.3 0.6 0.26 11.0 0.6 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Pribosyltran PF00156.27 gi|389848810|ref|YP_006351047.1| - 7.7e-27 93.8 0.0 1.1e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389848810|ref|YP_006351047.1| - 0.0029 17.1 0.1 0.0085 15.5 0.1 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|389848810|ref|YP_006351047.1| - 0.0086 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase Prok-RING_2 PF14445.6 gi|389848811|ref|YP_006351048.1| - 0.0049 17.0 6.2 0.0057 16.8 6.2 1.0 1 0 0 1 1 1 1 Prokaryotic RING finger family 2 zf-HIT PF04438.16 gi|389848811|ref|YP_006351048.1| - 0.0052 16.6 4.4 0.0074 16.1 1.0 2.1 2 0 0 2 2 2 1 HIT zinc finger zf-B_box PF00643.24 gi|389848811|ref|YP_006351048.1| - 0.093 12.9 8.4 0.18 12.0 5.1 2.2 2 0 0 2 2 2 0 B-box zinc finger DZR PF12773.7 gi|389848811|ref|YP_006351048.1| - 0.65 10.1 11.1 5.2 7.2 11.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon tRNA-synt_1g PF09334.11 gi|389848811|ref|YP_006351048.1| - 1.1 7.9 3.3 1.1 8.0 3.3 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) Usp PF00582.26 gi|389848812|ref|YP_006351049.1| - 2.1e-55 187.1 2.3 1e-26 94.1 0.3 2.0 2 0 0 2 2 2 2 Universal stress protein family CBS PF00571.28 gi|389848813|ref|YP_006351050.1| - 1.1e-21 77.0 3.8 2.4e-12 47.1 0.4 2.2 2 0 0 2 2 2 2 CBS domain DUF2944 PF11161.8 gi|389848813|ref|YP_006351050.1| - 0.056 13.3 0.6 0.093 12.6 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2946) E1-E2_ATPase PF00122.20 gi|389848814|ref|YP_006351051.1| - 7.2e-51 172.3 5.5 7.2e-51 172.3 5.5 3.3 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|389848814|ref|YP_006351051.1| - 4.6e-42 144.7 5.7 8.3e-42 143.8 5.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|389848814|ref|YP_006351051.1| - 2.1e-07 30.9 0.2 0.00097 18.9 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389848814|ref|YP_006351051.1| - 3.9e-05 24.1 0.1 9.9e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389848814|ref|YP_006351051.1| - 0.00018 21.7 0.1 0.00045 20.4 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DS PF01916.17 gi|389848815|ref|YP_006351052.1| - 2.5e-100 335.5 0.0 2.9e-100 335.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Cu-oxidase_3 PF07732.15 gi|389848817|ref|YP_006351054.1| - 7.5e-23 80.8 1.1 2.3e-22 79.2 0.1 2.3 3 0 0 3 3 3 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|389848817|ref|YP_006351054.1| - 9.3e-14 51.3 4.1 6.7e-06 25.9 0.4 3.3 3 0 0 3 3 3 3 Multicopper oxidase Zip PF02535.22 gi|389848818|ref|YP_006351055.1| - 3.2e-07 29.9 25.1 1.7e-06 27.5 12.8 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter DUF5493 PF17597.2 gi|389848818|ref|YP_006351055.1| - 0.00046 20.4 2.0 0.00046 20.4 2.0 3.0 2 1 1 3 3 3 1 Family of unknown function (DUF5493) Borrelia_P13 PF05628.12 gi|389848818|ref|YP_006351055.1| - 0.19 11.7 16.9 0.22 11.5 1.4 3.1 3 1 1 4 4 4 0 Borrelia membrane protein P13 Copper-bind PF00127.20 gi|389848819|ref|YP_006351056.1| - 1.1e-12 48.3 0.0 1.5e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389848819|ref|YP_006351056.1| - 0.00044 20.3 0.1 0.0074 16.4 0.1 2.0 1 1 0 1 1 1 1 Cupredoxin-like domain N_NLPC_P60 PF12912.7 gi|389848819|ref|YP_006351056.1| - 0.11 12.9 0.1 5.1 7.5 0.0 2.1 1 1 1 2 2 2 0 NLPC_P60 stabilising domain, N term Fe_dep_repr_C PF02742.15 gi|389848820|ref|YP_006351057.1| - 1.1e-28 99.1 0.2 1.9e-28 98.3 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|389848820|ref|YP_006351057.1| - 8.2e-12 45.1 0.0 1.4e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|389848820|ref|YP_006351057.1| - 4.9e-09 36.3 0.1 8.9e-09 35.5 0.1 1.5 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.7 gi|389848820|ref|YP_006351057.1| - 7.7e-08 32.1 0.1 1.7e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389848820|ref|YP_006351057.1| - 5.2e-06 26.4 1.0 7.4e-06 25.9 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|389848820|ref|YP_006351057.1| - 5.7e-06 26.2 0.0 1.9e-05 24.5 0.0 1.8 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.6 gi|389848820|ref|YP_006351057.1| - 0.00012 21.6 0.0 0.00023 20.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389848820|ref|YP_006351057.1| - 0.00027 20.7 0.0 0.00073 19.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|389848820|ref|YP_006351057.1| - 0.00039 20.7 0.0 0.0011 19.3 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|389848820|ref|YP_006351057.1| - 0.0011 18.7 1.8 0.0027 17.5 0.0 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389848820|ref|YP_006351057.1| - 0.0013 18.8 0.1 0.0028 17.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|389848820|ref|YP_006351057.1| - 0.0014 18.3 0.0 0.05 13.4 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.21 gi|389848820|ref|YP_006351057.1| - 0.0022 17.6 0.2 0.0079 15.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 gi|389848820|ref|YP_006351057.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain AbiEi_4 PF13338.6 gi|389848820|ref|YP_006351057.1| - 0.02 15.1 0.0 0.052 13.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_5 PF01022.20 gi|389848820|ref|YP_006351057.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389848820|ref|YP_006351057.1| - 0.034 14.6 0.0 0.062 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_micro PF17007.5 gi|389848820|ref|YP_006351057.1| - 0.33 9.7 0.0 0.47 9.2 0.0 1.1 1 0 0 1 1 1 0 HTH-like XhlA PF10779.9 gi|389848822|ref|YP_006351059.1| - 0.022 15.0 1.2 0.45 10.8 0.1 2.7 2 0 0 2 2 2 0 Haemolysin XhlA DUF4140 PF13600.6 gi|389848822|ref|YP_006351059.1| - 0.64 10.5 11.7 0.13 12.7 4.1 2.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Sugarporin_N PF11471.8 gi|389848822|ref|YP_006351059.1| - 3 7.9 9.4 14 5.7 0.5 3.4 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension MarR_2 PF12802.7 gi|389848823|ref|YP_006351060.1| - 0.081 12.8 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|389848823|ref|YP_006351060.1| - 0.086 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|389848823|ref|YP_006351060.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CcmD PF04995.14 gi|389848823|ref|YP_006351060.1| - 0.3 11.2 0.0 0.3 11.2 0.0 2.6 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) FliN_N PF16973.5 gi|389848825|ref|YP_006351062.1| - 0.0048 16.7 0.2 0.0048 16.7 0.2 1.5 2 0 0 2 2 2 1 Flagellar motor switch protein FliN N-terminal DUF11 PF01345.18 gi|389848826|ref|YP_006351063.1| - 3.2e-13 49.8 0.0 3.9e-05 23.9 0.0 3.3 3 0 0 3 3 3 2 Domain of unknown function DUF11 HTH_10 PF04967.12 gi|389848828|ref|YP_006351065.1| - 2.5e-19 68.8 0.1 4.5e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|389848828|ref|YP_006351065.1| - 1.7e-08 33.8 5.8 1.3e-05 24.6 0.9 3.7 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_5 PF01022.20 gi|389848828|ref|YP_006351065.1| - 3e-05 23.8 0.1 7.6e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389848828|ref|YP_006351065.1| - 6.9e-05 22.7 0.1 0.00018 21.4 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|389848828|ref|YP_006351065.1| - 0.00032 20.4 0.2 0.0011 18.6 0.2 2.0 1 1 0 1 1 1 1 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|389848828|ref|YP_006351065.1| - 0.00081 19.4 0.6 0.026 14.6 0.2 2.8 2 1 1 3 3 3 1 Sigma-70 region 3 GerE PF00196.19 gi|389848828|ref|YP_006351065.1| - 0.00096 18.7 0.8 0.013 15.0 0.8 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|389848828|ref|YP_006351065.1| - 0.0018 17.8 0.2 0.011 15.2 0.0 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|389848828|ref|YP_006351065.1| - 0.0021 17.7 0.5 0.034 13.8 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|389848828|ref|YP_006351065.1| - 0.0021 18.1 0.7 0.049 13.7 0.2 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|389848828|ref|YP_006351065.1| - 0.0025 17.6 0.2 0.0088 15.8 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|389848828|ref|YP_006351065.1| - 0.0054 16.9 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase MarR_2 PF12802.7 gi|389848828|ref|YP_006351065.1| - 0.0073 16.2 0.1 0.019 14.8 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389848828|ref|YP_006351065.1| - 0.014 15.4 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 gi|389848828|ref|YP_006351065.1| - 0.016 15.0 0.1 0.041 13.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family MarR PF01047.22 gi|389848828|ref|YP_006351065.1| - 0.032 14.2 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|389848828|ref|YP_006351065.1| - 0.033 14.6 0.4 0.3 11.6 0.4 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389848828|ref|YP_006351065.1| - 0.037 14.2 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LacI PF00356.21 gi|389848828|ref|YP_006351065.1| - 0.049 13.4 0.5 0.15 11.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_23 PF13384.6 gi|389848828|ref|YP_006351065.1| - 0.067 13.0 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|389848828|ref|YP_006351065.1| - 0.11 12.3 0.3 0.94 9.4 0.1 2.6 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain PhoD PF09423.10 gi|389848830|ref|YP_006351067.1| - 1e-105 353.7 3.1 1.4e-105 353.2 3.1 1.2 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 gi|389848830|ref|YP_006351067.1| - 8.5e-32 109.6 0.1 1.8e-31 108.5 0.1 1.6 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Pur_ac_phosph_N PF16656.5 gi|389848830|ref|YP_006351067.1| - 2.7e-07 31.1 0.1 8.2e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Purple acid Phosphatase, N-terminal domain Ntox25 PF15530.6 gi|389848830|ref|YP_006351067.1| - 0.056 13.6 1.0 0.093 12.9 1.0 1.3 1 0 0 1 1 1 0 Bacterial toxin 25 TAT_signal PF10518.9 gi|389848830|ref|YP_006351067.1| - 0.26 11.2 5.2 0.21 11.5 2.6 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Molybdopterin_N PF18364.1 gi|389848832|ref|YP_006351069.1| - 0.11 12.5 0.1 0.47 10.5 0.1 2.1 1 0 0 1 1 1 0 Molybdopterin oxidoreductase N-terminal domain Baseplate_J PF04865.14 gi|389848834|ref|YP_006351071.1| - 1.4e-13 50.6 9.2 9.8e-13 47.8 7.6 2.7 3 0 0 3 3 3 1 Baseplate J-like protein VCBS PF13517.6 gi|389848834|ref|YP_006351071.1| - 0.021 15.4 7.9 1.4 9.6 0.1 5.0 5 0 0 5 5 5 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AAA_3 PF07726.11 gi|389848836|ref|YP_006351073.1| - 1.2e-64 216.1 0.0 1.9e-64 215.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|389848836|ref|YP_006351073.1| - 2.2e-20 72.3 0.4 4.3e-20 71.3 0.4 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|389848836|ref|YP_006351073.1| - 1.3e-13 51.1 0.0 2.3e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|389848836|ref|YP_006351073.1| - 2.8e-06 27.8 0.0 6.6e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|389848836|ref|YP_006351073.1| - 0.0011 18.6 0.0 0.012 15.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|389848836|ref|YP_006351073.1| - 0.076 12.4 0.0 0.94 8.8 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|389848836|ref|YP_006351073.1| - 0.12 12.1 0.0 1 9.1 0.0 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF58 PF01882.18 gi|389848838|ref|YP_006351075.1| - 2.4e-18 66.2 0.0 7.3e-18 64.6 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|389848838|ref|YP_006351075.1| - 4.4e-08 33.3 1.2 1.5e-07 31.6 1.2 2.0 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|389848838|ref|YP_006351075.1| - 7.6e-05 22.9 0.2 0.0002 21.6 0.2 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase MFS_1 PF07690.16 gi|389848838|ref|YP_006351075.1| - 0.0065 15.4 1.2 0.014 14.3 0.0 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF4129 PF13559.6 gi|389848839|ref|YP_006351076.1| - 1.4e-10 41.2 0.1 2.4e-10 40.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF3185 PF11381.8 gi|389848839|ref|YP_006351076.1| - 0.02 14.9 0.0 0.02 14.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) ABC_tran PF00005.27 gi|389848841|ref|YP_006351078.1| - 7.6e-30 104.2 0.0 2.4e-29 102.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389848841|ref|YP_006351078.1| - 2.3e-13 50.6 3.2 2.6e-09 37.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848841|ref|YP_006351078.1| - 5.9e-07 29.1 0.4 3.3e-06 26.7 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389848841|ref|YP_006351078.1| - 0.00023 21.6 0.1 0.00071 20.0 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 gi|389848841|ref|YP_006351078.1| - 0.00066 19.4 0.5 0.0066 16.1 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|389848841|ref|YP_006351078.1| - 0.003 18.1 2.6 0.0094 16.5 2.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389848841|ref|YP_006351078.1| - 0.0035 17.6 0.4 0.039 14.2 0.3 2.4 1 1 1 2 2 2 1 AAA domain DUF87 PF01935.17 gi|389848841|ref|YP_006351078.1| - 0.004 17.3 0.1 0.011 15.8 0.1 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_15 PF13175.6 gi|389848841|ref|YP_006351078.1| - 0.014 15.1 0.1 5.2 6.7 0.0 2.3 1 1 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 gi|389848841|ref|YP_006351078.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|389848841|ref|YP_006351078.1| - 0.016 14.9 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|389848841|ref|YP_006351078.1| - 0.031 14.7 0.3 0.26 11.7 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|389848841|ref|YP_006351078.1| - 0.037 13.5 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|389848841|ref|YP_006351078.1| - 0.04 13.6 0.4 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|389848841|ref|YP_006351078.1| - 0.045 13.8 0.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|389848841|ref|YP_006351078.1| - 0.064 12.5 0.0 3.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.6 gi|389848841|ref|YP_006351078.1| - 0.075 13.3 1.8 2.3 8.5 0.0 3.1 3 1 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|389848841|ref|YP_006351078.1| - 0.08 12.6 0.4 0.36 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|389848841|ref|YP_006351078.1| - 0.087 13.0 0.3 1 9.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|389848841|ref|YP_006351078.1| - 0.11 12.1 1.2 7.8 6.0 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|389848841|ref|YP_006351078.1| - 0.11 12.4 1.4 0.44 10.4 0.1 2.3 2 1 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|389848841|ref|YP_006351078.1| - 0.27 11.8 1.3 1.2 9.7 0.5 2.5 2 1 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.7 gi|389848842|ref|YP_006351079.1| - 0.0017 17.5 24.3 0.0017 17.5 24.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein LapA_dom PF06305.11 gi|389848842|ref|YP_006351079.1| - 0.29 11.0 0.1 0.29 11.0 0.1 3.9 3 1 1 4 4 4 0 Lipopolysaccharide assembly protein A domain ABC2_membrane_2 PF12679.7 gi|389848842|ref|YP_006351079.1| - 3.3 6.9 25.9 60 2.8 25.4 2.3 1 1 0 1 1 1 0 ABC-2 family transporter protein Lactamase_B_5 PF14597.6 gi|389848843|ref|YP_006351080.1| - 0.036 13.5 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Inositol_P PF00459.25 gi|389848843|ref|YP_006351080.1| - 0.18 11.2 0.3 0.31 10.5 0.3 1.3 1 0 0 1 1 1 0 Inositol monophosphatase family C2-set_2 PF08205.12 gi|389848847|ref|YP_006351084.1| - 0.032 14.3 0.1 0.053 13.6 0.1 1.3 1 0 0 1 1 1 0 CD80-like C2-set immunoglobulin domain SBP_bac_5 PF00496.22 gi|389848848|ref|YP_006351085.1| - 8.1e-66 222.5 0.3 9.5e-66 222.3 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RNA_capsid PF03035.14 gi|389848848|ref|YP_006351085.1| - 0.099 12.6 0.2 0.17 11.8 0.2 1.3 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein BPD_transp_1 PF00528.22 gi|389848849|ref|YP_006351086.1| - 2.5e-38 131.7 11.1 2.5e-38 131.7 11.1 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|389848849|ref|YP_006351086.1| - 0.13 12.9 5.2 0.42 11.2 0.1 3.2 3 2 0 3 3 3 0 Renin receptor-like protein GTP_EFTU_D4 PF14578.6 gi|389848849|ref|YP_006351086.1| - 0.17 11.8 0.6 3.4 7.7 0.1 2.3 2 0 0 2 2 2 0 Elongation factor Tu domain 4 BPD_transp_1 PF00528.22 gi|389848850|ref|YP_006351087.1| - 1.7e-31 109.4 10.3 1.7e-31 109.4 10.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389848850|ref|YP_006351087.1| - 1.2e-06 28.4 2.5 1e-05 25.4 0.0 2.9 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|389848851|ref|YP_006351088.1| - 9.4e-27 94.2 0.0 1.3e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848851|ref|YP_006351088.1| - 1.5e-17 63.8 0.3 3e-17 62.9 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|389848851|ref|YP_006351088.1| - 6.8e-05 23.2 0.2 0.0044 17.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|389848851|ref|YP_006351088.1| - 9.7e-05 22.3 0.3 0.0025 17.7 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|389848851|ref|YP_006351088.1| - 0.0022 18.4 0.9 0.005 17.2 0.9 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|389848851|ref|YP_006351088.1| - 0.032 14.3 0.1 0.065 13.3 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|389848851|ref|YP_006351088.1| - 0.033 13.9 0.1 0.067 12.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389848851|ref|YP_006351088.1| - 0.039 13.4 0.3 1.2 8.6 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AIG1 PF04548.16 gi|389848851|ref|YP_006351088.1| - 0.2 11.0 0.2 0.9 8.8 0.2 1.9 2 0 0 2 2 2 0 AIG1 family AAA_7 PF12775.7 gi|389848851|ref|YP_006351088.1| - 0.2 11.1 0.0 0.35 10.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|389848851|ref|YP_006351088.1| - 0.22 11.2 0.0 0.49 10.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|389848851|ref|YP_006351088.1| - 0.22 10.7 0.0 0.34 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|389848852|ref|YP_006351089.1| - 1.8e-31 109.5 0.0 2.5e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848852|ref|YP_006351089.1| - 8.2e-20 71.1 1.0 1.7e-19 70.1 1.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389848852|ref|YP_006351089.1| - 3.2e-08 33.7 0.0 0.00015 21.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389848852|ref|YP_006351089.1| - 1.2e-06 28.9 0.0 2.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848852|ref|YP_006351089.1| - 0.0001 22.8 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848852|ref|YP_006351089.1| - 0.001 19.0 0.1 0.0021 18.0 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|389848852|ref|YP_006351089.1| - 0.0017 17.9 0.2 0.0038 16.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|389848852|ref|YP_006351089.1| - 0.012 15.4 0.1 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.29 gi|389848852|ref|YP_006351089.1| - 0.012 16.0 0.1 0.076 13.4 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|389848852|ref|YP_006351089.1| - 0.018 15.1 0.1 0.34 10.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|389848852|ref|YP_006351089.1| - 0.023 14.1 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|389848852|ref|YP_006351089.1| - 0.043 14.0 0.2 0.079 13.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|389848852|ref|YP_006351089.1| - 0.043 13.3 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region SbcCD_C PF13558.6 gi|389848852|ref|YP_006351089.1| - 0.046 13.9 0.1 0.16 12.3 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 gi|389848852|ref|YP_006351089.1| - 0.053 12.8 0.2 0.1 11.9 0.2 1.4 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|389848852|ref|YP_006351089.1| - 0.058 13.8 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.25 gi|389848852|ref|YP_006351089.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|389848852|ref|YP_006351089.1| - 0.071 13.2 0.1 0.17 11.9 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|389848852|ref|YP_006351089.1| - 0.098 11.8 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|389848852|ref|YP_006351089.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|389848852|ref|YP_006351089.1| - 0.12 12.3 0.0 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 gi|389848852|ref|YP_006351089.1| - 0.14 12.1 0.2 0.25 11.2 0.2 1.4 1 0 0 1 1 1 0 NACHT domain Dicistro_VP4 PF11492.8 gi|389848854|ref|YP_006351091.1| - 0.41 10.6 4.4 0.34 10.9 1.5 2.5 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 ABC2_membrane_2 PF12679.7 gi|389848856|ref|YP_006351093.1| - 3.8e-26 92.0 13.1 5.8e-26 91.4 9.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389848856|ref|YP_006351093.1| - 1.1e-08 34.7 11.3 1.5e-08 34.2 11.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|389848856|ref|YP_006351093.1| - 2.2e-05 24.0 10.9 3.6e-05 23.3 10.9 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|389848856|ref|YP_006351093.1| - 0.00015 21.8 6.1 0.00015 21.8 6.1 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848856|ref|YP_006351093.1| - 0.0017 17.9 6.7 0.0017 17.9 6.7 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF2705 PF10920.8 gi|389848856|ref|YP_006351093.1| - 0.0034 16.7 1.8 0.0034 16.7 1.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2705) EMC3_TMCO1 PF01956.16 gi|389848856|ref|YP_006351093.1| - 0.31 10.8 1.1 0.6 9.8 1.1 1.4 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like ABC_tran PF00005.27 gi|389848857|ref|YP_006351094.1| - 8.3e-26 91.1 0.0 1.1e-25 90.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848857|ref|YP_006351094.1| - 8.8e-11 42.2 0.1 2.6e-06 27.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389848857|ref|YP_006351094.1| - 0.04 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|389848857|ref|YP_006351094.1| - 0.057 13.7 0.0 0.14 12.4 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|389848857|ref|YP_006351094.1| - 0.057 13.9 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389848857|ref|YP_006351094.1| - 0.058 13.1 0.1 0.25 11.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|389848857|ref|YP_006351094.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|389848857|ref|YP_006351094.1| - 0.08 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|389848857|ref|YP_006351094.1| - 0.092 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|389848857|ref|YP_006351094.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|389848857|ref|YP_006351094.1| - 0.16 11.4 0.0 17 4.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TAT_signal PF10518.9 gi|389848858|ref|YP_006351095.1| - 0.051 13.4 0.5 0.11 12.4 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1573 PF07610.11 gi|389848858|ref|YP_006351095.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1573) SNF PF00209.18 gi|389848859|ref|YP_006351096.1| - 4e-58 197.4 32.1 1.5e-29 103.1 15.0 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family P66_CC PF16563.5 gi|389848860|ref|YP_006351097.1| - 0.02 14.5 0.3 0.042 13.5 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil and interaction region of P66A and P66B with MBD2 NDUF_C2 PF06374.11 gi|389848860|ref|YP_006351097.1| - 0.13 12.4 0.1 0.14 12.3 0.1 1.3 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) ATPase_2 PF01637.18 gi|389848862|ref|YP_006351099.1| - 1.2e-24 87.5 0.0 1.3e-23 84.1 0.0 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|389848862|ref|YP_006351099.1| - 1.4e-16 60.7 0.0 2.8e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_16 PF13191.6 gi|389848862|ref|YP_006351099.1| - 5.3e-06 26.9 0.1 1.3e-05 25.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|389848862|ref|YP_006351099.1| - 6.5e-06 26.5 0.0 1.3e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|389848862|ref|YP_006351099.1| - 1.4e-05 25.1 0.0 2.4e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|389848862|ref|YP_006351099.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.6 1 1 0 1 1 1 0 Bacterial TniB protein HTH_10 PF04967.12 gi|389848863|ref|YP_006351100.1| - 4.7e-20 71.1 0.0 7.1e-20 70.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389848863|ref|YP_006351100.1| - 0.0013 18.7 0.2 0.0023 17.8 0.2 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|389848863|ref|YP_006351100.1| - 0.019 14.5 0.0 0.046 13.2 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|389848863|ref|YP_006351100.1| - 0.087 12.6 0.1 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 gi|389848863|ref|YP_006351100.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|389848863|ref|YP_006351100.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 region 3 MarR_2 PF12802.7 gi|389848863|ref|YP_006351100.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HD_3 PF13023.6 gi|389848865|ref|YP_006351102.1| - 2.1e-31 109.1 0.6 2.5e-31 108.8 0.6 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|389848865|ref|YP_006351102.1| - 9.7e-13 48.3 0.2 1.3e-12 47.8 0.2 1.2 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|389848865|ref|YP_006351102.1| - 1.2e-09 38.4 0.1 1.8e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|389848865|ref|YP_006351102.1| - 0.0036 16.8 0.1 0.005 16.3 0.1 1.2 1 0 0 1 1 1 1 HDOD domain DUF2063 PF09836.9 gi|389848865|ref|YP_006351102.1| - 0.022 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding domain Spo0M PF07070.11 gi|389848866|ref|YP_006351103.1| - 1.1e-75 253.8 0.1 1.3e-75 253.6 0.1 1.1 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.22 gi|389848866|ref|YP_006351103.1| - 0.013 16.0 0.0 0.02 15.3 0.0 1.3 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain Na_H_Exchanger PF00999.21 gi|389848868|ref|YP_006351105.1| - 4.5e-36 124.4 38.6 6.4e-36 124.0 38.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|389848868|ref|YP_006351105.1| - 2.8e-28 98.5 1.2 6.1e-28 97.4 1.2 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|389848868|ref|YP_006351105.1| - 3.9e-10 39.4 0.0 1.5e-09 37.6 0.0 2.1 2 0 0 2 2 1 1 TrkA-C domain F420_oxidored PF03807.17 gi|389848868|ref|YP_006351105.1| - 2e-06 28.3 0.4 5.5e-06 26.9 0.4 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|389848868|ref|YP_006351105.1| - 2e-05 25.0 0.1 4.5e-05 23.8 0.1 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|389848868|ref|YP_006351105.1| - 0.00054 19.6 0.1 0.00091 18.8 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|389848868|ref|YP_006351105.1| - 0.00066 20.2 0.0 0.0022 18.5 0.0 1.9 2 0 0 2 2 1 1 XdhC Rossmann domain Sacchrp_dh_NADP PF03435.18 gi|389848868|ref|YP_006351105.1| - 0.0017 18.6 0.2 0.0037 17.5 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|389848868|ref|YP_006351105.1| - 0.0017 18.0 0.1 0.0046 16.6 0.1 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|389848868|ref|YP_006351105.1| - 0.0032 17.4 1.0 0.0079 16.2 0.0 2.2 2 1 0 2 2 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|389848868|ref|YP_006351105.1| - 0.0042 16.5 0.1 0.025 14.0 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|389848868|ref|YP_006351105.1| - 0.0044 17.2 0.1 0.011 15.9 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HI0933_like PF03486.14 gi|389848868|ref|YP_006351105.1| - 0.0051 15.6 0.0 0.0077 15.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|389848868|ref|YP_006351105.1| - 0.0082 15.4 0.1 0.012 14.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_10 PF13460.6 gi|389848868|ref|YP_006351105.1| - 0.0092 15.9 1.3 0.018 15.0 1.3 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Pyr_redox PF00070.27 gi|389848868|ref|YP_006351105.1| - 0.013 16.0 0.1 0.038 14.6 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389848868|ref|YP_006351105.1| - 0.015 15.5 0.0 0.037 14.2 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.21 gi|389848868|ref|YP_006351105.1| - 0.037 13.5 0.1 0.058 12.8 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.14 gi|389848868|ref|YP_006351105.1| - 0.051 12.8 0.1 0.1 11.8 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389848868|ref|YP_006351105.1| - 0.16 11.2 0.1 0.25 10.5 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389848868|ref|YP_006351105.1| - 1.8 7.8 6.8 0.066 12.5 0.7 1.7 2 0 0 2 2 1 0 Alanine dehydrogenase/PNT, C-terminal domain DLH PF01738.18 gi|389848869|ref|YP_006351106.1| - 6.3e-09 35.7 0.0 3.6e-08 33.2 0.0 1.8 1 1 1 2 2 2 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|389848869|ref|YP_006351106.1| - 2.3e-07 30.3 0.1 0.0012 18.2 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|389848869|ref|YP_006351106.1| - 0.00011 22.8 0.6 0.015 15.9 0.2 2.6 1 1 2 3 3 3 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848869|ref|YP_006351106.1| - 0.00013 21.7 0.1 0.13 11.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|389848869|ref|YP_006351106.1| - 0.00078 19.5 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Ser_hydrolase PF06821.13 gi|389848869|ref|YP_006351106.1| - 0.0075 16.1 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase DUF3530 PF12048.8 gi|389848869|ref|YP_006351106.1| - 0.012 15.1 0.0 0.022 14.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3530) Peptidase_S9 PF00326.21 gi|389848869|ref|YP_006351106.1| - 0.013 15.0 0.0 0.23 10.9 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|389848869|ref|YP_006351106.1| - 0.069 13.1 0.1 11 5.9 0.0 2.2 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal AP_endonuc_2 PF01261.24 gi|389848870|ref|YP_006351107.1| - 4.1e-33 114.6 0.1 4.8e-33 114.4 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Phosphodiest PF01663.22 gi|389848871|ref|YP_006351108.1| - 1.3e-20 74.4 0.1 3.4e-15 56.5 0.1 2.1 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|389848871|ref|YP_006351108.1| - 0.0022 17.4 0.0 0.016 14.6 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily Type_ISP_C PF18135.1 gi|389848871|ref|YP_006351108.1| - 0.07 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Type ISP C-terminal specificity domain Acetyltransf_6 PF13480.7 gi|389848873|ref|YP_006351110.1| - 3.5e-21 75.9 0.0 9.6e-21 74.4 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|389848873|ref|YP_006351110.1| - 1.7e-05 23.9 0.0 0.067 12.1 0.0 2.4 2 0 0 2 2 2 2 FemAB family Putative_PNPOx PF01243.20 gi|389848874|ref|YP_006351111.1| - 1.8e-15 56.9 0.0 2.9e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|389848874|ref|YP_006351111.1| - 1e-11 45.0 0.2 1.1e-11 44.9 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|389848874|ref|YP_006351111.1| - 0.0076 15.8 0.0 0.0089 15.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like SSF PF00474.17 gi|389848875|ref|YP_006351112.1| - 6.3e-31 107.6 29.2 8.7e-31 107.2 29.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family TENA_THI-4 PF03070.16 gi|389848876|ref|YP_006351113.1| - 5.8e-26 91.6 0.0 7e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family PSK_trans_fac PF07704.11 gi|389848876|ref|YP_006351113.1| - 0.45 11.3 2.2 0.49 11.2 0.3 2.0 2 0 0 2 2 2 0 Rv0623-like transcription factor TENA_THI-4 PF03070.16 gi|389848877|ref|YP_006351114.1| - 9.9e-52 175.8 0.0 1.1e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TcdA_TcdB PF12919.7 gi|389848877|ref|YP_006351114.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain TBP PF00352.21 gi|389848878|ref|YP_006351115.1| - 1.3e-53 178.8 0.0 2.9e-27 94.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|389848878|ref|YP_006351115.1| - 5.5e-08 32.8 0.0 0.0011 19.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|389848878|ref|YP_006351115.1| - 0.0011 19.2 0.1 2 8.8 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment Cdc6_C PF09079.11 gi|389848880|ref|YP_006351116.1| - 5.9e-16 58.2 0.1 2.2e-15 56.4 0.1 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389848880|ref|YP_006351116.1| - 2.7e-13 50.3 0.0 8.8e-13 48.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848880|ref|YP_006351116.1| - 6.3e-11 43.0 3.7 2.3e-09 37.9 0.0 3.2 1 1 1 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|389848880|ref|YP_006351116.1| - 9.5e-06 25.6 0.0 3.7e-05 23.7 0.0 1.9 1 1 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|389848880|ref|YP_006351116.1| - 1.1e-05 25.9 0.0 3.2e-05 24.3 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|389848880|ref|YP_006351116.1| - 5.5e-05 23.2 0.1 0.00017 21.6 0.1 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|389848880|ref|YP_006351116.1| - 0.00045 20.0 0.3 0.32 10.7 0.1 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase TniB PF05621.11 gi|389848880|ref|YP_006351116.1| - 0.00078 18.9 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_32 PF13654.6 gi|389848880|ref|YP_006351116.1| - 0.0011 17.9 0.3 0.82 8.4 0.0 2.7 3 0 0 3 3 3 2 AAA domain KAP_NTPase PF07693.14 gi|389848880|ref|YP_006351116.1| - 0.0015 17.9 0.6 0.26 10.5 0.0 3.0 2 1 1 3 3 3 1 KAP family P-loop domain DUF815 PF05673.13 gi|389848880|ref|YP_006351116.1| - 0.002 17.4 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF87 PF01935.17 gi|389848880|ref|YP_006351116.1| - 0.0074 16.4 0.5 1.9 8.5 0.0 3.2 3 0 0 3 3 3 1 Helicase HerA, central domain AAA_7 PF12775.7 gi|389848880|ref|YP_006351116.1| - 0.0086 15.6 0.0 0.089 12.3 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region NB-ARC PF00931.22 gi|389848880|ref|YP_006351116.1| - 0.011 15.0 0.0 0.023 13.9 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|389848880|ref|YP_006351116.1| - 0.014 15.2 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|389848880|ref|YP_006351116.1| - 0.021 13.9 0.0 0.054 12.5 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|389848880|ref|YP_006351116.1| - 0.023 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|389848880|ref|YP_006351116.1| - 0.023 15.1 0.0 0.061 13.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|389848880|ref|YP_006351116.1| - 0.027 15.0 0.1 0.1 13.2 0.0 2.1 3 0 0 3 3 1 0 AAA domain Zeta_toxin PF06414.12 gi|389848880|ref|YP_006351116.1| - 0.041 13.1 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|389848880|ref|YP_006351116.1| - 0.052 13.9 0.4 0.13 12.6 0.4 1.7 1 0 0 1 1 1 0 AAA C-terminal domain TrwB_AAD_bind PF10412.9 gi|389848880|ref|YP_006351116.1| - 0.061 12.2 0.0 0.16 10.8 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_2 PF07724.14 gi|389848880|ref|YP_006351116.1| - 0.066 13.3 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) TIP49_C PF17856.1 gi|389848880|ref|YP_006351116.1| - 0.067 13.3 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain RuvB_N PF05496.12 gi|389848880|ref|YP_006351116.1| - 0.068 12.9 0.1 0.33 10.7 0.0 2.1 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 gi|389848880|ref|YP_006351116.1| - 0.069 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_lid_4 PF17864.1 gi|389848880|ref|YP_006351116.1| - 0.076 12.8 0.2 0.24 11.2 0.2 1.9 1 0 0 1 1 1 0 RuvB AAA lid domain AAA_5 PF07728.14 gi|389848880|ref|YP_006351116.1| - 0.079 13.0 0.2 19 5.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|389848880|ref|YP_006351116.1| - 0.082 13.1 0.4 4.6 7.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|389848880|ref|YP_006351116.1| - 0.12 12.3 0.0 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|389848880|ref|YP_006351116.1| - 0.13 12.3 0.1 0.51 10.4 0.1 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase Nitroreductase PF00881.24 gi|389848881|ref|YP_006351117.1| - 2e-14 54.0 0.0 2.2e-12 47.3 0.0 2.5 2 1 0 2 2 2 2 Nitroreductase family BTRD1 PF17660.1 gi|389848881|ref|YP_006351117.1| - 0.059 13.2 0.1 3.4 7.6 0.0 2.7 2 0 0 2 2 2 0 Bacterial tandem repeat domain 1 Thiolase_N PF00108.23 gi|389848883|ref|YP_006351119.1| - 1e-58 198.7 0.0 1.5e-58 198.3 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389848883|ref|YP_006351119.1| - 4.4e-08 32.8 0.4 1.5e-07 31.1 0.4 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|389848883|ref|YP_006351119.1| - 0.0021 18.1 0.7 3.6 7.6 0.0 3.5 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|389848883|ref|YP_006351119.1| - 0.051 13.1 2.0 1.1 8.8 0.2 2.6 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain Acetyltransf_1 PF00583.25 gi|389848884|ref|YP_006351120.1| - 1.2e-19 70.6 0.2 1.7e-19 70.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|389848884|ref|YP_006351120.1| - 1.1e-15 57.7 0.0 1.3e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848884|ref|YP_006351120.1| - 1.8e-15 57.1 0.1 2.5e-15 56.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|389848884|ref|YP_006351120.1| - 8.7e-13 48.7 0.0 1.1e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848884|ref|YP_006351120.1| - 6.8e-10 38.8 0.0 1.1e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|389848884|ref|YP_006351120.1| - 3.3e-09 37.5 0.2 4e-09 37.3 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|389848884|ref|YP_006351120.1| - 4.5e-09 36.5 0.6 2.4e-08 34.1 0.6 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|389848884|ref|YP_006351120.1| - 4.5e-05 23.6 0.0 6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|389848884|ref|YP_006351120.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|389848884|ref|YP_006351120.1| - 0.038 14.1 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4821 PF16092.5 gi|389848884|ref|YP_006351120.1| - 0.11 12.1 0.2 0.29 10.7 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4821) Na_Pi_cotrans PF02690.15 gi|389848885|ref|YP_006351121.1| - 3e-19 69.5 15.6 3.9e-11 43.2 2.4 2.3 2 0 0 2 2 2 2 Na+/Pi-cotransporter RhodobacterPufX PF11511.8 gi|389848885|ref|YP_006351121.1| - 1.5 8.5 3.9 30 4.3 0.4 3.2 2 0 0 2 2 2 0 Intrinsic membrane protein PufX Usp PF00582.26 gi|389848886|ref|YP_006351122.1| - 2.7e-33 115.4 2.7 3.1e-33 115.3 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF5314 PF17241.2 gi|389848886|ref|YP_006351122.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5314) DUF4010 PF13194.6 gi|389848887|ref|YP_006351123.1| - 9.3e-69 231.3 21.1 9.3e-69 231.3 21.1 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) Na_Ca_ex PF01699.24 gi|389848888|ref|YP_006351124.1| - 1.1e-26 93.6 37.2 5.7e-19 68.6 11.0 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Usp PF00582.26 gi|389848889|ref|YP_006351125.1| - 1.7e-37 129.1 0.4 2e-37 128.9 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Dodecin PF07311.12 gi|389848889|ref|YP_006351125.1| - 0.023 14.9 0.3 0.19 12.0 0.0 2.1 2 0 0 2 2 2 0 Dodecin Apolipoprotein PF01442.18 gi|389848890|ref|YP_006351126.1| - 0.0017 18.2 0.8 0.002 18.0 0.8 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain ApoLp-III PF07464.11 gi|389848890|ref|YP_006351126.1| - 0.0035 17.5 0.5 0.0038 17.3 0.5 1.0 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) BMFP PF04380.13 gi|389848890|ref|YP_006351126.1| - 0.0063 17.0 0.9 0.0096 16.4 0.4 1.5 1 1 1 2 2 2 1 Membrane fusogenic activity ApoO PF09769.9 gi|389848890|ref|YP_006351126.1| - 0.01 15.8 0.1 0.01 15.8 0.1 1.0 1 0 0 1 1 1 0 Apolipoprotein O YtxH PF12732.7 gi|389848890|ref|YP_006351126.1| - 0.011 16.3 0.9 0.012 16.1 0.9 1.1 1 0 0 1 1 1 0 YtxH-like protein Con-6 PF10346.9 gi|389848890|ref|YP_006351126.1| - 0.015 15.3 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 0 Conidiation protein 6 TBCA PF02970.16 gi|389848890|ref|YP_006351126.1| - 0.015 15.6 0.8 0.022 15.1 0.8 1.4 1 1 0 1 1 1 0 Tubulin binding cofactor A PilJ PF13675.6 gi|389848890|ref|YP_006351126.1| - 0.02 14.9 0.2 0.035 14.1 0.2 1.5 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term GPW_gp25 PF04965.14 gi|389848890|ref|YP_006351126.1| - 0.022 14.5 0.3 0.027 14.2 0.3 1.3 1 1 0 1 1 1 0 Gene 25-like lysozyme DUF3543 PF12063.8 gi|389848890|ref|YP_006351126.1| - 0.044 13.2 0.4 2.2 7.6 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3543) Tape_meas_lam_C PF09718.10 gi|389848890|ref|YP_006351126.1| - 0.045 13.9 0.0 0.053 13.7 0.0 1.2 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) PqqD PF05402.12 gi|389848890|ref|YP_006351126.1| - 0.064 13.6 0.6 0.092 13.1 0.6 1.3 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Ribosomal_S30AE PF02482.19 gi|389848890|ref|YP_006351126.1| - 0.077 13.8 0.7 0.12 13.2 0.6 1.3 1 1 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF1664 PF07889.12 gi|389848890|ref|YP_006351126.1| - 0.11 12.5 0.5 0.14 12.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) LPP PF04728.13 gi|389848890|ref|YP_006351126.1| - 0.12 12.8 1.7 0.18 12.2 1.5 1.5 1 1 1 2 2 2 0 Lipoprotein leucine-zipper BRI3BP PF14965.6 gi|389848890|ref|YP_006351126.1| - 0.21 11.1 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 Negative regulator of p53/TP53 SNARE PF05739.19 gi|389848890|ref|YP_006351126.1| - 1.9 8.6 4.3 1.9 8.5 0.9 1.9 2 0 0 2 2 2 0 SNARE domain AP_endonuc_2 PF01261.24 gi|389848891|ref|YP_006351127.1| - 8.1e-31 107.1 0.3 1.1e-30 106.7 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ribonuc_red_lgC PF02867.15 gi|389848892|ref|YP_006351128.1| - 2.9e-151 504.6 0.0 1.6e-108 363.5 0.0 2.2 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|389848892|ref|YP_006351128.1| - 3.9e-25 87.7 0.0 7.8e-25 86.7 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Sod_Fe_N PF00081.22 gi|389848893|ref|YP_006351129.1| - 1.7e-28 98.9 0.3 1.7e-28 98.9 0.3 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|389848893|ref|YP_006351129.1| - 4.9e-26 90.9 0.0 6.9e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Thiolase_N PF00108.23 gi|389848894|ref|YP_006351130.1| - 1e-28 100.4 4.9 4.5e-27 95.1 4.9 2.2 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389848894|ref|YP_006351130.1| - 1.4e-09 37.6 1.2 1.4e-09 37.6 1.2 2.7 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389848894|ref|YP_006351130.1| - 6.1e-09 35.8 6.3 4.7e-06 26.4 3.6 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|389848894|ref|YP_006351130.1| - 0.0083 16.1 4.5 0.05 13.6 2.2 3.1 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Dodecin PF07311.12 gi|389848894|ref|YP_006351130.1| - 0.11 12.8 0.4 2.3 8.6 0.2 2.9 3 0 0 3 3 3 0 Dodecin OB_aCoA_assoc PF01796.17 gi|389848895|ref|YP_006351131.1| - 3.5e-14 52.5 0.0 4.4e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|389848895|ref|YP_006351131.1| - 1.1e-05 25.2 2.6 1.6e-05 24.6 2.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|389848895|ref|YP_006351131.1| - 0.00012 21.9 0.2 0.00015 21.5 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|389848895|ref|YP_006351131.1| - 0.016 14.7 0.7 0.63 9.6 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|389848895|ref|YP_006351131.1| - 0.03 14.3 1.6 0.56 10.2 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.7 gi|389848895|ref|YP_006351131.1| - 0.038 14.0 0.8 0.059 13.4 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1936 PF09151.10 gi|389848895|ref|YP_006351131.1| - 0.084 12.8 0.6 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) HypA PF01155.19 gi|389848895|ref|YP_006351131.1| - 0.091 12.8 0.2 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|389848895|ref|YP_006351131.1| - 0.1 12.8 1.0 0.5 10.6 1.0 1.9 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 gi|389848895|ref|YP_006351131.1| - 0.43 10.7 5.0 5.3 7.2 5.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|389848895|ref|YP_006351131.1| - 0.84 9.6 7.1 24 4.9 0.5 2.6 2 1 1 3 3 3 0 Nudix N-terminal HAD PF12710.7 gi|389848896|ref|YP_006351132.1| - 1e-23 84.7 0.1 1.2e-23 84.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|389848896|ref|YP_006351132.1| - 4.1e-13 50.1 2.8 1.2e-11 45.3 2.8 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|389848896|ref|YP_006351132.1| - 8.8e-09 35.5 0.1 8.4e-05 22.4 0.0 3.0 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389848896|ref|YP_006351132.1| - 8.2e-05 22.8 0.1 0.02 15.0 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase TF_AP-2 PF03299.14 gi|389848896|ref|YP_006351132.1| - 0.018 15.0 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcription factor AP-2 Hydrolase_6 PF13344.6 gi|389848896|ref|YP_006351132.1| - 0.021 14.9 0.0 0.13 12.4 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|389848896|ref|YP_006351132.1| - 0.14 11.6 0.0 0.28 10.5 0.0 1.5 2 0 0 2 2 2 0 Putative Phosphatase CBS PF00571.28 gi|389848897|ref|YP_006351133.1| - 7e-32 109.7 14.5 4.5e-10 39.8 0.4 4.3 4 0 0 4 4 4 4 CBS domain BDM PF10684.9 gi|389848897|ref|YP_006351133.1| - 0.18 12.2 0.6 1.4 9.3 0.1 2.2 2 0 0 2 2 2 0 Putative biofilm-dependent modulation protein Usp PF00582.26 gi|389848899|ref|YP_006351135.1| - 1.1e-65 220.5 12.9 1.5e-34 119.5 4.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF3197 PF11432.8 gi|389848899|ref|YP_006351135.1| - 0.00031 20.6 0.1 0.00077 19.3 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3197) Asparaginase_C PF17763.1 gi|389848899|ref|YP_006351135.1| - 0.00062 20.0 1.0 0.0035 17.6 0.1 2.4 1 1 1 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Lactamase_B_4 PF13691.6 gi|389848899|ref|YP_006351135.1| - 0.0021 17.7 0.0 0.6 9.8 0.0 2.6 2 0 0 2 2 2 2 tRNase Z endonuclease Peripla_BP_4 PF13407.6 gi|389848899|ref|YP_006351135.1| - 0.0053 16.4 6.2 0.12 11.9 2.8 2.6 2 1 1 3 3 3 2 Periplasmic binding protein domain AP_endonuc_2 PF01261.24 gi|389848899|ref|YP_006351135.1| - 0.011 15.2 8.1 3.5 7.0 3.8 3.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PucR PF07905.11 gi|389848899|ref|YP_006351135.1| - 0.02 15.2 0.1 1.9 8.8 0.0 2.6 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family Bac_thur_toxin PF01338.18 gi|389848899|ref|YP_006351135.1| - 0.13 11.7 0.4 1.3 8.4 0.2 2.0 2 0 0 2 2 2 0 Bacillus thuringiensis toxin CoA_binding_2 PF13380.6 gi|389848899|ref|YP_006351135.1| - 0.29 11.6 5.5 3 8.4 0.0 3.2 3 1 0 3 3 3 0 CoA binding domain YukC PF10140.9 gi|389848901|ref|YP_006351137.1| - 0.016 14.1 0.0 0.016 14.1 0.0 1.0 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC Complex1_51K PF01512.17 gi|389848902|ref|YP_006351138.1| - 7.7e-21 74.5 0.0 1.2e-20 74.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|389848902|ref|YP_006351138.1| - 5.8e-05 23.0 0.2 0.00012 22.0 0.2 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|389848902|ref|YP_006351138.1| - 0.0086 15.9 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 SLBB domain DDE_Tnp_IS1595 PF12762.7 gi|389848903|ref|YP_006351139.1| - 2.9e-08 33.8 0.0 6.4e-08 32.8 0.0 1.5 2 0 0 2 2 2 1 ISXO2-like transposase domain HTH_38 PF13936.6 gi|389848903|ref|YP_006351139.1| - 0.0019 17.9 0.0 0.0041 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|389848903|ref|YP_006351139.1| - 0.053 13.4 0.9 0.14 12.1 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|389848903|ref|YP_006351139.1| - 0.066 13.0 0.8 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain eIF-5_eIF-2B PF01873.17 gi|389848903|ref|YP_006351139.1| - 0.068 13.1 0.0 0.74 9.7 0.1 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HTH_29 PF13551.6 gi|389848903|ref|YP_006351139.1| - 0.19 11.8 0.1 0.19 11.8 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn helix DNA_RNApol_7kD PF03604.13 gi|389848903|ref|YP_006351139.1| - 0.27 10.9 1.4 0.72 9.6 1.4 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|389848903|ref|YP_006351139.1| - 3 7.4 7.5 2.1 7.9 4.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain HD_4 PF13328.6 gi|389848904|ref|YP_006351140.1| - 6.5e-07 29.2 0.0 1e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|389848904|ref|YP_006351140.1| - 0.0079 16.4 0.3 0.015 15.5 0.3 1.4 1 0 0 1 1 1 1 HD domain DUF3868 PF12984.7 gi|389848905|ref|YP_006351141.1| - 1.4e-05 24.9 11.4 0.38 10.6 0.0 7.1 4 3 4 8 8 8 2 Domain of unknown function, B. Theta Gene description (DUF3868) DUF2807 PF10988.8 gi|389848905|ref|YP_006351141.1| - 6.2 6.6 13.3 0.21 11.4 1.6 3.6 2 2 1 3 3 3 0 Putative auto-transporter adhesin, head GIN domain SBP_bac_1 PF01547.25 gi|389848906|ref|YP_006351142.1| - 4e-21 76.3 2.9 1.5e-20 74.4 2.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|389848906|ref|YP_006351142.1| - 6.7e-17 62.2 0.0 8.9e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HATPase_c PF02518.26 gi|389848907|ref|YP_006351143.1| - 2.1e-26 92.6 0.1 5.1e-26 91.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|389848907|ref|YP_006351143.1| - 6.5e-14 52.0 0.0 2.1e-12 47.1 0.0 2.9 3 0 0 3 3 2 1 PAS fold HisKA PF00512.25 gi|389848907|ref|YP_006351143.1| - 1.2e-10 41.2 0.1 6.1e-10 39.0 0.1 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|389848907|ref|YP_006351143.1| - 4.4e-10 39.6 0.0 2.5e-09 37.1 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|389848907|ref|YP_006351143.1| - 2.9e-08 34.0 0.0 3.1e-07 30.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold HAMP PF00672.25 gi|389848907|ref|YP_006351143.1| - 4.3e-08 33.4 0.2 1.3e-07 31.9 0.2 1.9 1 0 0 1 1 1 1 HAMP domain PAS_9 PF13426.7 gi|389848907|ref|YP_006351143.1| - 5.6e-07 29.8 0.0 4.4e-06 26.9 0.0 2.5 3 0 0 3 3 3 1 PAS domain HATPase_c_5 PF14501.6 gi|389848907|ref|YP_006351143.1| - 7.2e-05 22.6 0.0 0.00024 21.0 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|389848907|ref|YP_006351143.1| - 0.0052 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain FxsA PF04186.13 gi|389848907|ref|YP_006351143.1| - 0.061 13.5 0.3 0.17 12.0 0.3 1.7 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein MlaC PF05494.12 gi|389848907|ref|YP_006351143.1| - 0.091 12.5 0.1 0.55 10.0 0.0 2.4 2 0 0 2 2 2 0 MlaC protein HATPase_c_3 PF13589.6 gi|389848907|ref|YP_006351143.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abhydrolase_6 PF12697.7 gi|389848908|ref|YP_006351144.1| - 9.5e-18 65.6 6.9 1.1e-17 65.4 6.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848908|ref|YP_006351144.1| - 6e-06 26.1 0.0 0.0026 17.5 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|389848908|ref|YP_006351144.1| - 0.004 17.3 0.0 0.011 15.9 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein Hydrolase_4 PF12146.8 gi|389848908|ref|YP_006351144.1| - 0.041 13.2 0.0 0.22 10.8 0.0 1.9 1 1 0 1 1 1 0 Serine aminopeptidase, S33 HrpE PF06188.12 gi|389848908|ref|YP_006351144.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E TrkA_N PF02254.18 gi|389848909|ref|YP_006351145.1| - 2.8e-40 137.2 9.6 1.5e-20 73.6 1.0 3.2 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|389848909|ref|YP_006351145.1| - 3e-25 87.8 2.8 1.1e-11 44.4 0.0 2.9 3 0 0 3 3 3 2 TrkA-C domain 2-Hacid_dh_C PF02826.19 gi|389848909|ref|YP_006351145.1| - 0.0016 17.8 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ion_trans_2 PF07885.16 gi|389848909|ref|YP_006351145.1| - 0.0083 16.1 1.1 0.017 15.1 1.1 1.5 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.21 gi|389848909|ref|YP_006351145.1| - 0.01 15.9 0.1 0.02 15.0 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF2117 PF09890.9 gi|389848909|ref|YP_006351145.1| - 0.078 12.4 0.9 0.16 11.4 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2117) IlvN PF07991.12 gi|389848909|ref|YP_006351145.1| - 0.11 12.1 1.7 0.56 9.8 0.1 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TPP_enzyme_M PF00205.22 gi|389848910|ref|YP_006351146.1| - 3e-33 114.5 0.9 4.3e-33 113.9 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|389848910|ref|YP_006351146.1| - 3.7e-31 108.0 0.7 6.8e-31 107.1 0.7 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|389848910|ref|YP_006351146.1| - 4.2e-29 101.3 0.0 6.1e-28 97.6 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PNTB PF02233.16 gi|389848910|ref|YP_006351146.1| - 0.1 11.5 0.0 0.21 10.5 0.0 1.4 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit Glyco_hydro_3_C PF01915.22 gi|389848910|ref|YP_006351146.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Epimerase PF01370.21 gi|389848911|ref|YP_006351147.1| - 3.2e-42 144.7 0.4 4.1e-42 144.3 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389848911|ref|YP_006351147.1| - 2.3e-40 139.0 0.3 4.5e-39 134.8 0.3 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|389848911|ref|YP_006351147.1| - 5.5e-23 81.4 0.0 7e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|389848911|ref|YP_006351147.1| - 9.4e-17 61.0 1.3 1.2e-16 60.6 1.3 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|389848911|ref|YP_006351147.1| - 3.3e-13 49.4 0.0 2.6e-11 43.2 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|389848911|ref|YP_006351147.1| - 1.5e-10 41.2 0.3 2.4e-10 40.6 0.3 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|389848911|ref|YP_006351147.1| - 1.9e-08 33.8 1.1 1.3e-06 27.8 1.1 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|389848911|ref|YP_006351147.1| - 4.8e-07 29.4 1.5 5.8e-07 29.2 0.5 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|389848911|ref|YP_006351147.1| - 7e-07 29.3 0.1 1.3e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|389848911|ref|YP_006351147.1| - 0.00047 19.8 0.4 0.0011 18.6 0.4 1.6 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|389848911|ref|YP_006351147.1| - 0.0019 17.8 0.4 0.0035 16.9 0.4 1.5 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|389848911|ref|YP_006351147.1| - 0.069 12.5 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|389848911|ref|YP_006351147.1| - 0.075 12.9 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HD PF01966.22 gi|389848912|ref|YP_006351148.1| - 1.5e-09 38.1 0.2 2.2e-09 37.6 0.2 1.3 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|389848912|ref|YP_006351148.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 HD domain HD_2 PF12917.7 gi|389848912|ref|YP_006351148.1| - 0.076 12.8 0.0 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme MmlI PF09448.10 gi|389848913|ref|YP_006351149.1| - 1.6e-26 93.0 5.3 1.3e-11 44.9 0.2 3.9 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|389848913|ref|YP_006351149.1| - 1.1e-23 84.2 13.0 1e-11 45.8 1.7 3.8 2 2 0 2 2 2 2 EthD domain DUF4543 PF15076.6 gi|389848913|ref|YP_006351149.1| - 0.009 16.1 0.4 4.7 7.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4543) FOXP-CC PF16159.5 gi|389848913|ref|YP_006351149.1| - 0.036 14.7 0.4 11 6.7 0.1 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain ABM PF03992.16 gi|389848913|ref|YP_006351149.1| - 0.094 12.8 0.4 5.7 7.1 0.1 2.8 2 2 0 2 2 2 0 Antibiotic biosynthesis monooxygenase Peptidase_M24 PF00557.24 gi|389848914|ref|YP_006351150.1| - 9.5e-29 100.6 0.1 1.4e-28 100.1 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|389848914|ref|YP_006351150.1| - 0.00021 22.0 0.0 0.00038 21.1 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Transket_pyr PF02779.24 gi|389848915|ref|YP_006351151.1| - 8.3e-49 165.7 0.0 1.2e-48 165.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|389848915|ref|YP_006351151.1| - 3.4e-33 114.2 0.0 6.6e-33 113.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|389848916|ref|YP_006351152.1| - 2.7e-81 272.8 0.0 3.5e-81 272.5 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|389848916|ref|YP_006351152.1| - 9e-07 28.4 0.0 1.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|389848916|ref|YP_006351152.1| - 6.6e-05 22.0 0.1 0.00012 21.2 0.1 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 gi|389848916|ref|YP_006351152.1| - 0.0001 22.1 0.1 0.00059 19.7 0.1 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V-ATPase_G_2 PF16999.5 gi|389848916|ref|YP_006351152.1| - 0.073 13.5 3.8 0.29 11.6 3.8 2.0 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Spore_GerAC PF05504.11 gi|389848916|ref|YP_006351152.1| - 0.29 11.3 0.9 0.53 10.5 0.9 1.4 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal SNF PF00209.18 gi|389848917|ref|YP_006351153.1| - 8.5e-50 169.9 30.7 4.3e-25 88.4 9.2 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF2919 PF11143.8 gi|389848917|ref|YP_006351153.1| - 0.95 9.8 4.5 0.4 11.0 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2919) Aminotran_1_2 PF00155.21 gi|389848918|ref|YP_006351154.1| - 1.3e-59 202.3 0.0 1.4e-59 202.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|389848918|ref|YP_006351154.1| - 4.3e-14 52.6 0.0 6.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|389848918|ref|YP_006351154.1| - 9.5e-08 31.4 0.0 1.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|389848918|ref|YP_006351154.1| - 2.6e-07 30.2 0.0 3.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|389848918|ref|YP_006351154.1| - 2.4e-05 23.0 0.0 3.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aldedh PF00171.22 gi|389848919|ref|YP_006351155.1| - 9.7e-137 456.2 0.0 1.1e-136 456.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family IclR PF01614.18 gi|389848920|ref|YP_006351156.1| - 8.4e-33 112.9 0.1 3e-32 111.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_24 PF13412.6 gi|389848920|ref|YP_006351156.1| - 1.8e-07 30.6 0.3 9.5e-07 28.3 0.3 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389848920|ref|YP_006351156.1| - 2.7e-07 30.3 0.2 7.4e-07 28.9 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389848920|ref|YP_006351156.1| - 1.9e-06 27.8 0.9 5.6e-06 26.3 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389848920|ref|YP_006351156.1| - 4.1e-06 26.6 0.2 1.1e-05 25.1 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|389848920|ref|YP_006351156.1| - 6.2e-06 26.1 0.4 3.6e-05 23.6 0.3 2.3 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|389848920|ref|YP_006351156.1| - 0.00011 22.1 0.2 0.00022 21.1 0.2 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|389848920|ref|YP_006351156.1| - 0.00063 19.6 0.0 0.0021 17.9 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|389848920|ref|YP_006351156.1| - 0.0011 18.7 0.6 0.0025 17.5 0.2 1.8 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain DprA_WH PF17782.1 gi|389848920|ref|YP_006351156.1| - 0.027 14.6 0.1 0.11 12.6 0.1 2.1 2 0 0 2 2 2 0 DprA winged helix domain HTH_AsnC-type PF13404.6 gi|389848920|ref|YP_006351156.1| - 0.052 13.4 0.4 0.19 11.6 0.2 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|389848920|ref|YP_006351156.1| - 0.062 13.9 0.2 0.24 12.0 0.2 2.1 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|389848920|ref|YP_006351156.1| - 0.074 12.9 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB T3SS_needle_E PF08988.10 gi|389848920|ref|YP_006351156.1| - 0.16 12.1 1.5 0.19 11.9 0.2 1.8 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle F420_oxidored PF03807.17 gi|389848921|ref|YP_006351157.1| - 1.7e-15 57.4 0.2 3.6e-15 56.3 0.1 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|389848921|ref|YP_006351157.1| - 0.00098 19.4 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|389848921|ref|YP_006351157.1| - 0.001 19.5 0.0 0.0018 18.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.17 gi|389848921|ref|YP_006351157.1| - 0.0024 16.9 0.1 0.0031 16.5 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389848921|ref|YP_006351157.1| - 0.0065 16.5 0.1 0.022 14.8 0.1 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.10 gi|389848921|ref|YP_006351157.1| - 0.031 14.2 0.1 0.074 13.0 0.1 1.6 2 0 0 2 2 2 0 KR domain Shikimate_DH PF01488.20 gi|389848921|ref|YP_006351157.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|389848921|ref|YP_006351157.1| - 0.16 12.1 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus zf-FCS PF06467.14 gi|389848922|ref|YP_006351158.1| - 0.013 15.4 3.7 0.036 14.0 3.7 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|389848922|ref|YP_006351158.1| - 0.073 13.4 5.7 0.52 10.7 5.7 2.2 1 1 0 1 1 1 0 Archaeal TRASH domain VATC PF18716.1 gi|389848922|ref|YP_006351158.1| - 0.59 10.0 7.7 0.76 9.7 0.1 2.4 2 1 0 2 2 2 0 Vms1-associating treble clef domain Acetyltransf_10 PF13673.7 gi|389848923|ref|YP_006351159.1| - 8.6e-12 45.1 0.0 1.3e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848923|ref|YP_006351159.1| - 1e-10 41.8 0.1 2.4e-10 40.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848923|ref|YP_006351159.1| - 1.8e-10 41.0 0.0 3.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|389848923|ref|YP_006351159.1| - 4.3e-05 23.6 0.1 0.0003 20.8 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|389848923|ref|YP_006351159.1| - 0.00031 20.7 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|389848923|ref|YP_006351159.1| - 0.00054 20.1 0.0 0.00083 19.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|389848923|ref|YP_006351159.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Zn-ribbon_8 PF09723.10 gi|389848923|ref|YP_006351159.1| - 0.035 14.2 1.4 0.077 13.1 1.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|389848923|ref|YP_006351159.1| - 0.037 13.7 1.3 0.061 13.0 1.3 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Acetyltransf_3 PF13302.7 gi|389848923|ref|YP_006351159.1| - 0.044 14.5 0.0 0.068 13.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NOB1_Zn_bind PF08772.11 gi|389848923|ref|YP_006351159.1| - 0.082 13.1 1.2 0.14 12.3 1.2 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Adeno_E3B PF03376.14 gi|389848923|ref|YP_006351159.1| - 0.18 12.1 0.0 0.34 11.2 0.0 1.4 1 0 0 1 1 1 0 Adenovirus E3B protein Acetyltransf_13 PF13880.6 gi|389848923|ref|YP_006351159.1| - 0.18 11.8 0.0 0.54 10.3 0.0 1.7 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase DUF2182 PF09948.9 gi|389848924|ref|YP_006351160.1| - 5.7e-57 192.7 16.3 5.7e-57 192.7 16.3 1.8 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) DUF4064 PF13273.6 gi|389848924|ref|YP_006351160.1| - 0.016 15.5 2.5 0.016 15.5 2.5 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) DUF1326 PF07040.11 gi|389848925|ref|YP_006351161.1| - 5e-44 150.4 0.1 5.7e-44 150.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1326) SUI1 PF01253.22 gi|389848926|ref|YP_006351162.1| - 1.3e-15 57.7 0.0 1.6e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|389848926|ref|YP_006351162.1| - 0.0056 17.0 0.0 0.0075 16.5 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF4479 PF14794.6 gi|389848926|ref|YP_006351162.1| - 0.087 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Acetyltransf_1 PF00583.25 gi|389848927|ref|YP_006351163.1| - 6e-12 45.8 0.0 1.1e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|389848927|ref|YP_006351163.1| - 5.5e-11 42.8 0.1 7.8e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|389848927|ref|YP_006351163.1| - 6.4e-07 29.7 0.0 1.5e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|389848927|ref|YP_006351163.1| - 9.5e-05 22.3 0.1 0.00018 21.4 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|389848927|ref|YP_006351163.1| - 0.00019 21.5 0.0 0.00048 20.2 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|389848927|ref|YP_006351163.1| - 0.00077 19.6 0.2 0.0034 17.4 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389848927|ref|YP_006351163.1| - 0.0022 18.7 0.1 0.0038 17.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|389848927|ref|YP_006351163.1| - 0.0083 16.3 0.2 0.032 14.4 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ArsA_ATPase PF02374.15 gi|389848928|ref|YP_006351164.1| - 8.9e-76 255.0 0.0 1e-75 254.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|389848928|ref|YP_006351164.1| - 3.7e-08 33.5 0.0 8.6e-08 32.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848928|ref|YP_006351164.1| - 5.1e-08 33.0 0.0 3.4e-07 30.4 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|389848928|ref|YP_006351164.1| - 1.9e-07 30.8 0.1 0.0014 18.1 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|389848928|ref|YP_006351164.1| - 0.0061 16.1 0.0 0.016 14.7 0.0 1.7 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|389848928|ref|YP_006351164.1| - 0.012 15.3 0.2 0.13 11.8 0.3 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|389848928|ref|YP_006351164.1| - 0.02 14.3 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Fer4_NifH PF00142.18 gi|389848928|ref|YP_006351164.1| - 0.031 13.7 0.1 0.054 12.9 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|389848928|ref|YP_006351164.1| - 0.042 13.1 0.3 4.1 6.6 0.0 2.4 2 0 0 2 2 2 0 ATPase MipZ AAA_24 PF13479.6 gi|389848928|ref|YP_006351164.1| - 0.093 12.4 0.0 0.17 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|389848928|ref|YP_006351164.1| - 0.15 11.6 6.4 0.69 9.5 2.9 2.8 2 2 0 2 2 2 0 AAA domain Thiolase_N PF00108.23 gi|389848929|ref|YP_006351165.1| - 3.8e-76 255.9 0.0 2.2e-75 253.4 0.0 1.9 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389848929|ref|YP_006351165.1| - 3.7e-29 100.9 0.0 6.9e-29 100.0 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389848929|ref|YP_006351165.1| - 0.0091 15.6 4.5 0.016 14.8 0.1 3.0 4 0 0 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Rick_17kDa_Anti PF05433.15 gi|389848930|ref|YP_006351166.1| - 0.0097 15.8 4.6 0.027 14.4 4.6 1.7 1 0 0 1 1 1 1 Glycine zipper 2TM domain Sacchrp_dh_NADP PF03435.18 gi|389848931|ref|YP_006351167.1| - 6.7e-13 49.0 0.1 1.2e-12 48.2 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|389848931|ref|YP_006351167.1| - 1.2e-05 25.3 0.3 2e-05 24.5 0.3 1.4 1 0 0 1 1 1 1 NAD(P)H-binding SVIP PF15811.5 gi|389848931|ref|YP_006351167.1| - 0.1 13.1 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 Small VCP/p97-interacting protein Putative_PNPOx PF01243.20 gi|389848932|ref|YP_006351168.1| - 1.1e-14 54.3 0.0 1.7e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|389848932|ref|YP_006351168.1| - 2.1e-08 34.3 0.1 2.9e-08 33.8 0.1 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|389848932|ref|YP_006351168.1| - 0.0048 16.5 0.0 0.0059 16.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like PBP PF01161.20 gi|389848933|ref|YP_006351169.1| - 3e-34 118.2 0.2 3.7e-34 117.9 0.2 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein UPF0182 PF03699.13 gi|389848934|ref|YP_006351170.1| - 1e-271 903.5 4.7 1.2e-271 903.3 4.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) ApoO PF09769.9 gi|389848934|ref|YP_006351170.1| - 0.088 12.8 1.2 0.45 10.5 0.0 2.5 2 0 0 2 2 2 0 Apolipoprotein O TF_Zn_Ribbon PF08271.12 gi|389848935|ref|YP_006351171.1| - 0.0047 16.4 0.2 0.0065 16.0 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding IRF-2BP1_2 PF11261.8 gi|389848936|ref|YP_006351172.1| - 0.018 14.6 0.9 0.069 12.7 0.5 2.0 2 0 0 2 2 2 0 Interferon regulatory factor 2-binding protein zinc finger KH_7 PF17214.3 gi|389848936|ref|YP_006351172.1| - 0.053 13.5 0.1 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 KH domain Npa1 PF11707.8 gi|389848937|ref|YP_006351173.1| - 0.19 11.1 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Ribosome 60S biogenesis N-terminal BtrH_N PF14399.6 gi|389848938|ref|YP_006351174.1| - 5.5e-24 84.9 0.0 1.1e-23 84.0 0.0 1.5 1 0 0 1 1 1 1 Butirosin biosynthesis protein H, N-terminal DUF4872 PF16169.5 gi|389848938|ref|YP_006351174.1| - 6e-17 61.9 0.3 8e-17 61.5 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4872) Peptidase_C39_2 PF13529.6 gi|389848938|ref|YP_006351174.1| - 0.00019 22.0 0.0 0.00071 20.1 0.0 1.9 1 1 0 1 1 1 1 Peptidase_C39 like family Peptidase_C39 PF03412.15 gi|389848938|ref|YP_006351174.1| - 0.14 12.0 0.0 3.6 7.4 0.1 2.3 2 0 0 2 2 2 0 Peptidase C39 family P5CR_dimer PF14748.6 gi|389848938|ref|YP_006351174.1| - 0.16 12.2 0.4 0.4 11.0 0.0 1.8 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation Abhydrolase_1 PF00561.20 gi|389848939|ref|YP_006351175.1| - 8.2e-12 45.3 0.0 1.9e-10 40.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389848939|ref|YP_006351175.1| - 2.2e-07 30.4 0.0 0.0034 16.7 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PhaC_N PF07167.13 gi|389848939|ref|YP_006351175.1| - 2.8e-07 30.4 0.1 4.5e-07 29.7 0.1 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DUF3141 PF11339.8 gi|389848939|ref|YP_006351175.1| - 1.1e-06 27.4 0.0 1.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3141) DLH PF01738.18 gi|389848939|ref|YP_006351175.1| - 0.00018 21.1 0.0 0.41 10.2 0.0 2.4 2 0 0 2 2 2 2 Dienelactone hydrolase family FSH1 PF03959.13 gi|389848939|ref|YP_006351175.1| - 0.00089 19.0 0.0 0.034 13.8 0.0 2.2 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Thioesterase PF00975.20 gi|389848939|ref|YP_006351175.1| - 0.087 12.9 0.1 0.21 11.7 0.0 1.6 2 0 0 2 2 2 0 Thioesterase domain PHB_depo_C PF06850.11 gi|389848939|ref|YP_006351175.1| - 0.092 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 PHB de-polymerase C-terminus HTH_IclR PF09339.10 gi|389848940|ref|YP_006351176.1| - 0.0021 17.8 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|389848940|ref|YP_006351176.1| - 0.0059 16.5 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|389848940|ref|YP_006351176.1| - 0.0097 16.1 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|389848940|ref|YP_006351176.1| - 0.036 14.0 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|389848940|ref|YP_006351176.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 MarR family FA_desaturase PF00487.24 gi|389848941|ref|YP_006351177.1| - 0.16 11.8 7.0 0.19 11.5 0.4 2.0 1 1 1 2 2 2 0 Fatty acid desaturase AAA_16 PF13191.6 gi|389848942|ref|YP_006351178.1| - 9.5e-05 22.8 8.0 0.41 11.0 1.5 5.0 4 1 0 4 4 4 2 AAA ATPase domain AAA_33 PF13671.6 gi|389848942|ref|YP_006351178.1| - 0.0052 16.9 0.5 1 9.5 0.0 3.7 4 0 0 4 4 4 1 AAA domain BTAD PF03704.17 gi|389848943|ref|YP_006351179.1| - 0.013 16.0 45.0 0.71 10.3 0.4 10.8 7 4 2 10 10 10 0 Bacterial transcriptional activator domain HTH_31 PF13560.6 gi|389848943|ref|YP_006351179.1| - 0.04 14.3 7.3 4 7.9 0.0 5.1 5 0 0 5 5 5 0 Helix-turn-helix domain DUF533 PF04391.12 gi|389848943|ref|YP_006351179.1| - 0.13 11.9 9.8 11 5.5 0.0 5.3 5 0 0 5 5 5 0 Protein of unknown function (DUF533) TetR_C_27 PF17935.1 gi|389848943|ref|YP_006351179.1| - 0.36 10.9 4.6 9.8 6.3 0.1 4.3 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain SIL1 PF16782.5 gi|389848943|ref|YP_006351179.1| - 0.57 9.3 3.1 20 4.2 0.0 3.9 4 0 0 4 4 4 0 Nucleotide exchange factor SIL1 TPR_19 PF14559.6 gi|389848943|ref|YP_006351179.1| - 7.7 7.1 43.9 2.9 8.5 0.0 13.1 15 1 0 15 15 15 0 Tetratricopeptide repeat EthD PF07110.11 gi|389848944|ref|YP_006351180.1| - 0.14 13.3 0.0 0.2 12.8 0.0 1.2 1 0 0 1 1 1 0 EthD domain Beta_helix PF13229.6 gi|389848945|ref|YP_006351181.1| - 0.008 16.0 4.8 0.008 16.0 4.8 2.0 2 0 0 2 2 2 1 Right handed beta helix region DUF4843 PF16132.5 gi|389848945|ref|YP_006351181.1| - 0.056 13.0 0.0 2.9 7.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4843) AHSA1 PF08327.11 gi|389848945|ref|YP_006351181.1| - 0.075 13.3 0.1 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein MRP-S35 PF10246.9 gi|389848945|ref|YP_006351181.1| - 0.16 12.0 0.0 0.52 10.3 0.0 1.8 1 0 0 1 1 1 0 Mitochondrial ribosomal protein MRP-S35 BCA_ABC_TP_C PF12399.8 gi|389848945|ref|YP_006351181.1| - 2.4 8.1 6.6 1 9.4 0.4 2.8 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter PadR PF03551.14 gi|389848949|ref|YP_006351185.1| - 6.1e-17 61.4 0.7 7.7e-17 61.0 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389848949|ref|YP_006351185.1| - 5.6e-05 23.6 0.1 7e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389848949|ref|YP_006351185.1| - 0.0009 19.0 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|389848949|ref|YP_006351185.1| - 0.00093 19.1 0.0 0.0016 18.4 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|389848949|ref|YP_006351185.1| - 0.0075 16.4 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HSP20 PF00011.21 gi|389848951|ref|YP_006351187.1| - 4.3e-17 62.1 0.0 5.5e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389848951|ref|YP_006351187.1| - 2.4e-10 39.8 0.0 3.3e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PRO8NT PF08082.11 gi|389848951|ref|YP_006351187.1| - 0.006 16.5 0.3 0.66 9.9 0.2 2.0 1 1 1 2 2 2 2 PRO8NT (NUC069), PrP8 N-terminal domain PIH1_CS PF18201.1 gi|389848951|ref|YP_006351187.1| - 0.017 15.5 0.0 0.021 15.2 0.0 1.1 1 0 0 1 1 1 0 PIH1 CS-like domain Peptidase_S8 PF00082.22 gi|389848954|ref|YP_006351190.1| - 2.1e-14 53.5 0.1 2.9e-14 53.0 0.1 1.2 1 0 0 1 1 1 1 Subtilase family ABC_tran PF00005.27 gi|389848955|ref|YP_006351191.1| - 8.3e-35 120.3 0.0 1.2e-34 119.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389848955|ref|YP_006351191.1| - 1.1e-10 41.6 0.5 2.7e-10 40.3 0.5 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|389848955|ref|YP_006351191.1| - 1.5e-07 31.5 0.1 0.00026 20.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|389848955|ref|YP_006351191.1| - 0.0056 17.1 0.5 0.047 14.1 0.5 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|389848955|ref|YP_006351191.1| - 0.0074 16.2 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|389848955|ref|YP_006351191.1| - 0.023 15.1 0.9 0.044 14.2 0.9 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|389848955|ref|YP_006351191.1| - 0.037 14.3 0.9 0.08 13.2 0.1 1.8 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|389848955|ref|YP_006351191.1| - 0.05 12.9 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin CysA_C_terminal PF17850.1 gi|389848955|ref|YP_006351191.1| - 0.059 14.0 0.0 0.28 11.8 0.0 2.3 2 0 0 2 2 2 0 CysA C-terminal regulatory domain G-alpha PF00503.20 gi|389848955|ref|YP_006351191.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|389848955|ref|YP_006351191.1| - 0.15 12.2 0.7 1.1 9.5 0.7 2.2 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|389848955|ref|YP_006351191.1| - 0.19 11.4 0.2 0.53 10.0 0.2 1.8 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|389848955|ref|YP_006351191.1| - 0.21 10.9 0.2 13 5.0 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_15 PF13175.6 gi|389848955|ref|YP_006351191.1| - 0.32 10.6 0.0 8.6 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|389848956|ref|YP_006351192.1| - 1e-09 38.4 14.3 1e-09 38.4 14.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848957|ref|YP_006351193.1| - 4.6e-10 39.5 19.3 4.6e-10 39.5 19.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|389848958|ref|YP_006351194.1| - 4.8e-19 68.7 0.2 8.7e-19 67.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848958|ref|YP_006351194.1| - 1e-13 51.9 6.5 1e-13 51.9 6.5 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389848958|ref|YP_006351194.1| - 1.5e-11 44.5 0.0 2.3e-11 43.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848958|ref|YP_006351194.1| - 0.011 15.6 2.3 0.011 15.6 2.3 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|389848958|ref|YP_006351194.1| - 7.5 6.0 7.4 0.57 9.6 1.1 2.2 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BCCT PF02028.17 gi|389848959|ref|YP_006351195.1| - 9.7e-115 383.8 52.5 1.2e-114 383.5 52.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter DUF1360 PF07098.11 gi|389848959|ref|YP_006351195.1| - 0.16 11.9 3.3 0.21 11.6 0.2 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1360) Fer2 PF00111.27 gi|389848960|ref|YP_006351196.1| - 1.9e-11 43.7 0.1 2.6e-11 43.3 0.1 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|389848960|ref|YP_006351196.1| - 0.0011 18.9 0.3 0.007 16.4 0.3 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UbiA PF01040.18 gi|389848961|ref|YP_006351197.1| - 4.3e-09 36.0 30.8 4.4e-09 36.0 28.4 2.2 1 1 1 2 2 2 1 UbiA prenyltransferase family Peptidase_S24 PF00717.23 gi|389848963|ref|YP_006351199.1| - 5.7e-08 32.6 0.0 1.3e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like GCV_T_C PF08669.11 gi|389848963|ref|YP_006351199.1| - 0.0099 15.8 0.5 0.11 12.5 0.1 2.8 2 1 0 3 3 3 1 Glycine cleavage T-protein C-terminal barrel domain EpuA PF11772.8 gi|389848963|ref|YP_006351199.1| - 5.7 6.7 10.9 7 6.4 2.2 2.9 3 0 0 3 3 3 0 DNA-directed RNA polymerase subunit beta Laminin_G_3 PF13385.6 gi|389848964|ref|YP_006351200.1| - 6.6e-18 65.3 0.1 6.6e-18 65.3 0.1 2.0 3 0 0 3 3 3 1 Concanavalin A-like lectin/glucanases superfamily DUF1152 PF06626.12 gi|389848965|ref|YP_006351201.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1152) Holin_SPP1 PF04688.13 gi|389848966|ref|YP_006351202.1| - 0.17 12.1 0.5 0.35 11.1 0.5 1.4 1 0 0 1 1 1 0 SPP1 phage holin DUF4131 PF13567.6 gi|389848966|ref|YP_006351202.1| - 0.44 10.2 2.4 0.41 10.3 1.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ERp29_N PF07912.13 gi|389848967|ref|YP_006351203.1| - 0.051 13.7 0.1 0.1 12.8 0.1 1.5 1 0 0 1 1 1 0 ERp29, N-terminal domain YSIRK_signal PF04650.17 gi|389848968|ref|YP_006351204.1| - 1.4 8.9 3.5 2.3 8.1 3.5 1.4 1 0 0 1 1 1 0 YSIRK type signal peptide Sporozoite_P67 PF05642.11 gi|389848969|ref|YP_006351205.1| - 0.00092 17.4 2.5 0.00096 17.4 2.5 1.1 1 0 0 1 1 1 1 Sporozoite P67 surface antigen CDC45 PF02724.14 gi|389848969|ref|YP_006351205.1| - 0.002 16.5 0.7 0.0021 16.4 0.7 1.1 1 0 0 1 1 1 1 CDC45-like protein GBP_PSP PF02425.15 gi|389848969|ref|YP_006351205.1| - 0.0088 15.7 0.6 0.53 10.0 0.0 2.5 2 0 0 2 2 2 1 Paralytic/GBP/PSP peptide FAM176 PF14851.6 gi|389848969|ref|YP_006351205.1| - 7.2 6.3 6.2 13 5.4 6.2 1.5 1 0 0 1 1 1 0 FAM176 family Nop14 PF04147.12 gi|389848969|ref|YP_006351205.1| - 8.9 4.4 12.9 11 4.0 12.9 1.0 1 0 0 1 1 1 0 Nop14-like family DUF5305 PF17231.2 gi|389848971|ref|YP_006351207.1| - 1.5e-40 139.0 0.0 3.8e-39 134.4 0.0 2.6 3 0 0 3 3 3 1 Family of unknown function (DUF5305) Phospholamban PF04272.14 gi|389848971|ref|YP_006351207.1| - 0.18 11.3 0.1 0.31 10.5 0.1 1.3 1 0 0 1 1 1 0 Phospholamban Rhomboid PF01694.22 gi|389848972|ref|YP_006351208.1| - 9.5e-06 25.7 19.5 0.0014 18.7 10.2 2.1 1 1 1 2 2 2 2 Rhomboid family MerC PF03203.14 gi|389848972|ref|YP_006351208.1| - 1 9.9 10.6 0.62 10.5 3.4 2.5 2 0 0 2 2 2 0 MerC mercury resistance protein OppC_N PF12911.7 gi|389848972|ref|YP_006351208.1| - 1 9.4 3.7 4.9 7.2 0.0 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF1772 PF08592.11 gi|389848972|ref|YP_006351208.1| - 4.2 7.7 8.9 29 5.0 8.2 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) NifU PF01106.17 gi|389848977|ref|YP_006351213.1| - 3.6e-13 49.5 0.1 5.1e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 NifU-like domain Fe_dep_repress PF01325.19 gi|389848978|ref|YP_006351214.1| - 2.6e-09 37.1 0.0 4.6e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|389848978|ref|YP_006351214.1| - 0.0045 16.9 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389848978|ref|YP_006351214.1| - 0.02 14.5 0.0 0.069 12.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe_dep_repr_C PF02742.15 gi|389848978|ref|YP_006351214.1| - 0.059 13.5 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|389848978|ref|YP_006351214.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|389848978|ref|YP_006351214.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Peripla_BP_2 PF01497.18 gi|389848981|ref|YP_006351217.1| - 3e-14 53.2 0.0 4.7e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389848981|ref|YP_006351217.1| - 0.057 13.3 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HEAT_2 PF13646.6 gi|389848982|ref|YP_006351218.1| - 3e-14 53.1 6.2 2.1e-05 24.8 2.0 3.4 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.6 gi|389848982|ref|YP_006351218.1| - 1.2e-09 38.5 6.8 0.17 12.4 0.0 5.5 2 1 3 5 5 5 5 HEAT-like repeat HEAT PF02985.22 gi|389848982|ref|YP_006351218.1| - 2.5e-07 30.4 8.2 0.61 10.5 0.1 5.8 6 0 0 6 6 6 2 HEAT repeat Cnd1 PF12717.7 gi|389848982|ref|YP_006351218.1| - 3e-07 30.6 0.0 0.26 11.3 0.0 3.2 1 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|389848982|ref|YP_006351218.1| - 6.8e-05 21.6 0.0 0.00073 18.2 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region zinc_ribbon_2 PF13240.6 gi|389848982|ref|YP_006351218.1| - 0.00016 21.3 3.0 0.00033 20.3 3.0 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|389848982|ref|YP_006351218.1| - 0.0059 16.0 6.0 0.076 12.4 0.5 2.3 1 1 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|389848982|ref|YP_006351218.1| - 0.0066 16.4 0.7 0.013 15.6 0.7 1.6 1 0 0 1 1 1 1 Double zinc ribbon API5 PF05918.11 gi|389848982|ref|YP_006351218.1| - 0.35 9.6 0.6 14 4.4 0.1 2.1 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) ORMDL PF04061.14 gi|389848983|ref|YP_006351219.1| - 0.2 11.5 0.1 0.28 11.0 0.1 1.2 1 0 0 1 1 1 0 ORMDL family Reprolysin_4 PF13583.6 gi|389848984|ref|YP_006351220.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|389848984|ref|YP_006351220.1| - 0.05 14.1 0.0 0.094 13.2 0.0 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.8 gi|389848984|ref|YP_006351220.1| - 0.061 12.9 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_5 PF13688.6 gi|389848984|ref|YP_006351220.1| - 0.07 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Astacin PF01400.24 gi|389848984|ref|YP_006351220.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Polyketide_cyc2 PF10604.9 gi|389848985|ref|YP_006351221.1| - 1.6e-06 28.4 0.9 2.4e-06 27.9 0.9 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_10 PF04967.12 gi|389848987|ref|YP_006351223.1| - 6.1e-14 51.6 0.1 1.1e-13 50.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389848987|ref|YP_006351223.1| - 0.00055 19.6 0.2 0.0055 16.3 0.2 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389848987|ref|YP_006351223.1| - 0.0083 15.6 0.2 0.016 14.7 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|389848987|ref|YP_006351223.1| - 0.0093 15.9 0.1 0.021 14.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|389848987|ref|YP_006351223.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|389848987|ref|YP_006351223.1| - 0.034 14.0 0.0 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|389848987|ref|YP_006351223.1| - 0.11 12.3 0.4 0.47 10.3 0.4 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|389848987|ref|YP_006351223.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 GerE PF00196.19 gi|389848987|ref|YP_006351223.1| - 0.2 11.2 0.0 5.3 6.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sacchrp_dh_NADP PF03435.18 gi|389848988|ref|YP_006351224.1| - 2.3e-11 44.1 0.1 3.7e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|389848988|ref|YP_006351224.1| - 1.6e-06 28.2 0.1 3.5e-06 27.0 0.1 1.6 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|389848988|ref|YP_006351224.1| - 2.2e-06 27.7 0.2 4.6e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 gi|389848988|ref|YP_006351224.1| - 0.00055 20.0 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.25 gi|389848988|ref|YP_006351224.1| - 0.0018 17.8 0.3 0.0036 16.8 0.3 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.24 gi|389848988|ref|YP_006351224.1| - 0.0052 17.2 0.0 0.0088 16.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|389848988|ref|YP_006351224.1| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|389848988|ref|YP_006351224.1| - 0.043 13.9 0.0 0.086 13.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 3Beta_HSD PF01073.19 gi|389848988|ref|YP_006351224.1| - 0.11 11.5 0.0 0.49 9.4 0.0 1.9 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Gp_dh_N PF00044.24 gi|389848988|ref|YP_006351224.1| - 0.16 12.3 0.1 0.39 11.1 0.1 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|389848988|ref|YP_006351224.1| - 0.19 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein FaeA PF04703.12 gi|389848990|ref|YP_006351226.1| - 0.021 15.2 0.0 0.24 11.8 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein TrmB PF01978.19 gi|389848990|ref|YP_006351226.1| - 0.07 13.0 0.0 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|389848990|ref|YP_006351226.1| - 0.14 12.1 0.1 4 7.4 0.0 2.6 2 0 0 2 2 2 0 HTH domain AlbA_2 PF04326.14 gi|389848992|ref|YP_006351228.1| - 9.5e-12 45.3 0.0 1.8e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Putative DNA-binding domain DUF1447 PF07288.11 gi|389848992|ref|YP_006351228.1| - 0.044 13.8 0.7 0.32 11.1 0.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) VbhA PF18495.1 gi|389848993|ref|YP_006351229.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Antitoxin VbhA Phage_integrase PF00589.22 gi|389848995|ref|YP_006351231.1| - 0.00094 19.0 0.0 0.002 17.9 0.0 1.5 1 1 0 1 1 1 1 Phage integrase family DUF2971 PF11185.8 gi|389848996|ref|YP_006351232.1| - 0.034 15.3 0.0 0.29 12.3 0.0 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2971) DUF4437 PF14499.6 gi|389848997|ref|YP_006351233.1| - 0.066 12.3 0.0 0.079 12.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) Anti-TRAP PF15777.5 gi|389848998|ref|YP_006351234.1| - 0.023 14.7 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DNA_RNApol_7kD PF03604.13 gi|389848998|ref|YP_006351234.1| - 0.027 14.2 0.5 7.1 6.4 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.22 gi|389848998|ref|YP_006351234.1| - 0.17 11.8 0.6 0.31 11.0 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ACC PF17848.1 gi|389848998|ref|YP_006351234.1| - 0.25 11.4 5.9 5.3 7.2 0.1 3.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_6 PF14599.6 gi|389848998|ref|YP_006351234.1| - 0.65 10.1 3.3 2.7 8.1 0.1 2.4 1 1 1 2 2 2 0 Zinc-ribbon Glyco_hydro_97 PF10566.9 gi|389848999|ref|YP_006351235.1| - 1e-88 297.3 0.0 1.6e-88 296.7 0.0 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|389848999|ref|YP_006351235.1| - 1.7e-73 247.0 0.0 3.4e-73 246.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal Glucodextran_C PF09985.9 gi|389848999|ref|YP_006351235.1| - 7.9e-51 172.7 0.1 1.7e-50 171.6 0.1 1.6 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase GH97_C PF14509.6 gi|389848999|ref|YP_006351235.1| - 6e-25 87.3 0.0 4.4e-24 84.5 0.0 2.6 2 1 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.15 gi|389848999|ref|YP_006351235.1| - 1.8e-06 28.3 0.5 1.8e-06 28.3 0.5 3.3 3 0 0 3 3 3 1 Carbohydrate binding module (family 6) CBM_35 PF16990.5 gi|389848999|ref|YP_006351235.1| - 4.4e-06 27.0 0.6 1.9e-05 24.9 0.1 2.3 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) DUF4249 PF14054.6 gi|389848999|ref|YP_006351235.1| - 0.0007 19.3 0.6 0.0013 18.4 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4249) DUF5010_C PF18099.1 gi|389848999|ref|YP_006351235.1| - 0.0043 17.2 0.1 0.023 14.8 0.0 2.3 2 0 0 2 2 2 1 DUF5010 C-terminal domain DUF2799 PF10973.8 gi|389848999|ref|YP_006351235.1| - 0.0065 16.9 0.6 0.025 15.0 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2799) BclA_C PF18573.1 gi|389848999|ref|YP_006351235.1| - 1.1 9.1 4.1 35 4.3 1.5 3.3 3 0 0 3 3 3 0 BclA C-terminal domain CarboxypepD_reg PF13620.6 gi|389848999|ref|YP_006351235.1| - 5.7 7.3 25.1 0.2 11.9 3.0 6.7 7 0 0 7 7 7 0 Carboxypeptidase regulatory-like domain HATPase_c PF02518.26 gi|389849000|ref|YP_006351236.1| - 3.7e-16 59.6 0.4 6.7e-16 58.8 0.4 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389849000|ref|YP_006351236.1| - 1.6e-12 47.2 1.8 1.6e-12 47.2 1.8 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|389849000|ref|YP_006351236.1| - 1.8e-07 31.4 0.1 4.4e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|389849000|ref|YP_006351236.1| - 4e-07 30.2 0.0 1.2e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|389849000|ref|YP_006351236.1| - 1.1e-05 25.3 0.5 5.9e-05 23.0 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS PF00989.25 gi|389849000|ref|YP_006351236.1| - 8.6e-05 22.5 0.0 0.00029 20.8 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|389849000|ref|YP_006351236.1| - 0.00094 19.4 0.0 0.0024 18.1 0.0 1.8 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|389849000|ref|YP_006351236.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PadR PF03551.14 gi|389849001|ref|YP_006351237.1| - 5.1e-10 39.2 0.1 6.2e-10 38.9 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|389849001|ref|YP_006351237.1| - 1.6e-05 24.8 0.0 2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|389849001|ref|YP_006351237.1| - 0.00026 21.4 0.0 0.00039 20.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389849001|ref|YP_006351237.1| - 0.00099 18.9 0.2 0.0012 18.6 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 gi|389849001|ref|YP_006351237.1| - 0.0024 17.9 0.2 0.0027 17.8 0.2 1.1 1 0 0 1 1 1 1 Replication-relaxation DUF4364 PF14277.6 gi|389849001|ref|YP_006351237.1| - 0.012 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) WAPL PF07814.13 gi|389849001|ref|YP_006351237.1| - 0.077 11.8 0.0 0.085 11.6 0.0 1.0 1 0 0 1 1 1 0 Wings apart-like protein regulation of heterochromatin Mrr_N PF14338.6 gi|389849001|ref|YP_006351237.1| - 0.08 13.1 1.5 0.18 12.0 0.1 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain AstE_AspA PF04952.14 gi|389849002|ref|YP_006351238.1| - 3.3e-11 42.8 0.0 5.9e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|389849002|ref|YP_006351238.1| - 1.2e-06 28.1 0.0 3.8e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Carboxypeptidase controlling helical cell shape catalytic Thioredoxin_4 PF13462.6 gi|389849002|ref|YP_006351238.1| - 0.011 15.9 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 gi|389849002|ref|YP_006351238.1| - 0.016 15.0 0.0 0.034 13.9 0.0 1.6 1 1 0 1 1 1 0 DSBA-like thioredoxin domain NTP_transferase PF00483.23 gi|389849003|ref|YP_006351239.1| - 8.2e-38 130.4 0.0 1.1e-37 129.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389849003|ref|YP_006351239.1| - 5.2e-16 59.4 0.1 9e-16 58.6 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389849003|ref|YP_006351239.1| - 1.2e-09 37.5 19.1 9.6e-05 22.0 0.9 5.0 3 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|389849003|ref|YP_006351239.1| - 1e-05 25.4 0.1 1.6e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peripla_BP_6 PF13458.6 gi|389849003|ref|YP_006351239.1| - 0.013 15.2 0.3 0.027 14.1 0.1 1.5 1 1 0 1 1 1 0 Periplasmic binding protein DUF4954 PF16314.5 gi|389849003|ref|YP_006351239.1| - 0.079 11.1 0.3 0.11 10.6 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Asn_synthase PF00733.21 gi|389849004|ref|YP_006351240.1| - 4.3e-08 33.2 0.1 1.3e-07 31.6 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase SIS PF01380.22 gi|389849005|ref|YP_006351241.1| - 2.1e-41 140.9 0.4 1.8e-19 69.9 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|389849005|ref|YP_006351241.1| - 4.7e-21 75.4 0.1 1.1e-20 74.2 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|389849005|ref|YP_006351241.1| - 3.6e-18 65.6 0.0 6.5e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|389849005|ref|YP_006351241.1| - 0.0016 17.4 0.0 0.0029 16.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II FMN_dh PF01070.18 gi|389849005|ref|YP_006351241.1| - 0.019 14.0 0.2 0.038 13.0 0.0 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase SIS_2 PF13580.6 gi|389849005|ref|YP_006351241.1| - 0.057 13.4 2.7 3.4 7.7 0.0 3.2 3 1 1 4 4 4 0 SIS domain DUF3700 PF12481.8 gi|389849005|ref|YP_006351241.1| - 0.068 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Aluminium induced protein DUF2206 PF09971.9 gi|389849006|ref|YP_006351242.1| - 2e-09 36.7 0.9 4.7e-09 35.5 0.9 1.6 1 0 0 1 1 1 1 Predicted membrane protein (DUF2206) PMT_2 PF13231.6 gi|389849006|ref|YP_006351242.1| - 7.5e-06 26.2 14.4 7.5e-06 26.2 14.4 3.6 3 2 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase ATPgrasp_Ter PF15632.6 gi|389849007|ref|YP_006351243.1| - 1.4e-22 79.8 0.0 2.2e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon TrkA_N PF02254.18 gi|389849007|ref|YP_006351243.1| - 0.06 13.6 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain ATP-grasp_4 PF13535.6 gi|389849007|ref|YP_006351243.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain DUF354 PF04007.12 gi|389849008|ref|YP_006351244.1| - 2e-24 86.3 0.0 2.3e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|389849008|ref|YP_006351244.1| - 0.00014 21.9 0.0 0.00036 20.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|389849008|ref|YP_006351244.1| - 0.0098 15.9 0.4 0.0098 15.9 0.4 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 UDPG_MGDP_dh_N PF03721.14 gi|389849009|ref|YP_006351245.1| - 1.9e-35 122.1 0.2 3.1e-35 121.4 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389849009|ref|YP_006351245.1| - 6.8e-24 83.9 0.0 2.8e-23 81.9 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389849009|ref|YP_006351245.1| - 2.1e-18 66.7 0.0 5.9e-18 65.2 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|389849009|ref|YP_006351245.1| - 4.9e-06 26.8 0.0 1.3e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|389849009|ref|YP_006351245.1| - 0.0016 17.9 0.1 0.07 12.5 0.0 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389849009|ref|YP_006351245.1| - 0.0032 17.7 0.3 0.31 11.3 0.0 3.2 2 1 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|389849009|ref|YP_006351245.1| - 0.012 15.6 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|389849009|ref|YP_006351245.1| - 0.027 14.4 0.1 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|389849009|ref|YP_006351245.1| - 0.18 11.4 0.0 0.41 10.3 0.0 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|389849010|ref|YP_006351246.1| - 4.7e-35 120.9 0.0 7.9e-35 120.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389849010|ref|YP_006351246.1| - 5.7e-21 74.5 0.0 1.1e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389849010|ref|YP_006351246.1| - 3.8e-14 53.0 0.3 1e-13 51.6 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|389849010|ref|YP_006351246.1| - 1.7e-05 25.0 0.0 0.00015 22.0 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389849010|ref|YP_006351246.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|389849010|ref|YP_006351246.1| - 0.066 13.1 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Hexapep PF00132.24 gi|389849011|ref|YP_006351247.1| - 7.8e-27 92.0 19.2 3.2e-08 33.0 0.7 5.1 4 1 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389849011|ref|YP_006351247.1| - 1.2e-10 41.0 21.3 3.6e-05 23.4 0.3 5.4 2 1 3 5 5 5 5 Hexapeptide repeat of succinyl-transferase DUF1616 PF07760.11 gi|389849012|ref|YP_006351248.1| - 1e-66 225.3 5.3 1.4e-66 224.9 5.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF3040 PF11239.8 gi|389849012|ref|YP_006351248.1| - 2.7 8.3 12.8 4.1 7.7 2.7 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) YdjM PF04307.14 gi|389849013|ref|YP_006351249.1| - 5.1e-08 32.4 4.9 6.5e-08 32.1 4.9 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|389849013|ref|YP_006351249.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.5 2 0 0 2 2 2 0 Zinc dependent phospholipase C Pectate_lyase_3 PF12708.7 gi|389849014|ref|YP_006351250.1| - 1.5e-07 31.5 2.4 3.6e-06 27.0 0.0 2.5 2 0 0 2 2 2 2 Pectate lyase superfamily protein HTH_10 PF04967.12 gi|389849015|ref|YP_006351251.1| - 8.6e-18 63.9 0.0 1.6e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389849015|ref|YP_006351251.1| - 7e-10 39.0 0.8 3.9e-08 33.3 0.0 2.2 2 1 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|389849015|ref|YP_006351251.1| - 1.4e-07 31.3 0.1 3.3e-07 30.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389849015|ref|YP_006351251.1| - 7.3e-07 28.6 0.2 1.4e-06 27.8 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|389849015|ref|YP_006351251.1| - 9.8e-07 28.2 0.0 3.1e-06 26.6 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|389849015|ref|YP_006351251.1| - 0.00017 21.6 0.2 0.00098 19.2 0.1 2.1 2 0 0 2 2 2 1 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|389849015|ref|YP_006351251.1| - 0.0022 17.8 1.0 0.0022 17.8 1.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389849015|ref|YP_006351251.1| - 0.0028 17.3 0.9 0.0057 16.3 0.3 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|389849015|ref|YP_006351251.1| - 0.0036 17.3 0.1 0.0071 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_50 PF18024.1 gi|389849015|ref|YP_006351251.1| - 0.0065 16.1 0.1 0.016 14.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849015|ref|YP_006351251.1| - 0.022 14.8 0.0 0.09 12.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|389849015|ref|YP_006351251.1| - 0.046 13.5 0.2 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|389849015|ref|YP_006351251.1| - 0.048 13.9 0.2 0.1 12.8 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|389849015|ref|YP_006351251.1| - 0.078 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 HTH domain KORA PF16509.5 gi|389849015|ref|YP_006351251.1| - 0.099 12.9 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_1 PF00126.27 gi|389849015|ref|YP_006351251.1| - 0.12 12.4 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|389849015|ref|YP_006351251.1| - 0.13 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|389849015|ref|YP_006351251.1| - 0.16 12.0 0.1 0.27 11.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_WhiA PF02650.14 gi|389849015|ref|YP_006351251.1| - 0.21 12.0 0.0 0.39 11.1 0.0 1.3 1 0 0 1 1 1 0 WhiA C-terminal HTH domain Glycos_transf_2 PF00535.26 gi|389849016|ref|YP_006351252.1| - 3.2e-21 75.9 0.0 4.8e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389849016|ref|YP_006351252.1| - 9.3e-05 22.4 0.0 0.00025 21.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|389849016|ref|YP_006351252.1| - 0.00089 19.7 0.2 0.0042 17.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 CopD PF05425.13 gi|389849016|ref|YP_006351252.1| - 0.045 14.2 0.2 0.068 13.6 0.2 1.3 1 0 0 1 1 1 0 Copper resistance protein D DUF4282 PF14110.6 gi|389849016|ref|YP_006351252.1| - 0.12 13.1 1.4 0.22 12.3 1.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) GLTT PF01744.20 gi|389849016|ref|YP_006351252.1| - 0.16 11.7 2.0 0.29 11.0 2.0 1.4 1 0 0 1 1 1 0 GLTT repeat (6 copies) Beta_helix PF13229.6 gi|389849017|ref|YP_006351253.1| - 2.1e-06 27.7 3.8 0.00022 21.1 1.8 3.5 1 1 2 3 3 3 3 Right handed beta helix region Glycos_transf_1 PF00534.20 gi|389849018|ref|YP_006351254.1| - 1.8e-41 141.5 0.0 2.8e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389849018|ref|YP_006351254.1| - 7e-31 107.4 0.0 1.3e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389849018|ref|YP_006351254.1| - 1.8e-15 57.4 0.1 6.7e-15 55.5 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389849018|ref|YP_006351254.1| - 5.5e-10 39.9 0.1 2.9e-09 37.6 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|389849018|ref|YP_006351254.1| - 2e-09 37.7 0.0 4.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|389849018|ref|YP_006351254.1| - 0.0042 17.1 0.0 0.0097 15.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|389849018|ref|YP_006351254.1| - 0.018 14.7 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 Starch synthase catalytic domain Polysacc_synt_C PF14667.6 gi|389849019|ref|YP_006351255.1| - 2.3e-14 53.7 13.2 2.3e-14 53.7 13.2 4.4 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|389849019|ref|YP_006351255.1| - 3.6e-09 36.3 8.8 3.6e-09 36.3 8.8 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|389849019|ref|YP_006351255.1| - 1.5e-05 24.5 21.8 4.1e-05 23.1 21.8 1.7 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein DUF4149 PF13664.6 gi|389849019|ref|YP_006351255.1| - 0.023 15.0 0.7 0.023 15.0 0.7 3.6 5 1 0 5 5 5 0 Domain of unknown function (DUF4149) Mucin PF01456.17 gi|389849020|ref|YP_006351256.1| - 0.85 9.6 23.8 1.2 9.1 23.8 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Glycos_transf_2 PF00535.26 gi|389849021|ref|YP_006351257.1| - 1.1e-37 129.5 0.1 1.4e-37 129.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389849021|ref|YP_006351257.1| - 8.6e-20 71.6 0.0 1.2e-19 71.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|389849021|ref|YP_006351257.1| - 1.5e-16 60.7 0.1 6.7e-16 58.6 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|389849021|ref|YP_006351257.1| - 0.00077 19.9 0.1 0.0017 18.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|389849021|ref|YP_006351257.1| - 0.0019 17.7 0.0 0.0052 16.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|389849021|ref|YP_006351257.1| - 0.0084 16.0 0.0 0.017 15.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 MarR_2 PF12802.7 gi|389849022|ref|YP_006351258.1| - 6.1e-05 22.8 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|389849022|ref|YP_006351258.1| - 6.7e-05 22.6 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389849022|ref|YP_006351258.1| - 0.00077 19.3 0.1 0.0016 18.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389849022|ref|YP_006351258.1| - 0.0021 17.6 0.0 0.0043 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|389849022|ref|YP_006351258.1| - 0.0068 16.3 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389849022|ref|YP_006351258.1| - 0.008 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Adhesin_P1 PF03257.13 gi|389849022|ref|YP_006351258.1| - 0.016 15.7 2.4 0.26 11.9 0.2 2.8 2 0 0 2 2 2 0 Mycoplasma adhesin P1 Binary_toxB PF03495.14 gi|389849022|ref|YP_006351258.1| - 0.018 15.2 11.2 1.4 9.2 0.3 4.3 3 1 0 4 4 4 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain Fe_dep_repress PF01325.19 gi|389849022|ref|YP_006351258.1| - 0.082 13.1 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3489 PF11994.8 gi|389849022|ref|YP_006351258.1| - 0.14 12.3 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) GvpO PF05800.11 gi|389849022|ref|YP_006351258.1| - 0.15 12.1 0.5 0.29 11.1 0.5 1.4 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpO HTH_5 PF01022.20 gi|389849023|ref|YP_006351259.1| - 0.072 13.0 0.2 51 3.9 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Imm6 PF14434.6 gi|389849023|ref|YP_006351259.1| - 0.12 12.3 0.7 0.7 9.8 0.1 2.3 1 1 0 2 2 2 0 Immunity protein Imm6 GFO_IDH_MocA PF01408.22 gi|389849024|ref|YP_006351260.1| - 1.6e-24 87.0 0.1 2.8e-24 86.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|389849024|ref|YP_006351260.1| - 4.5e-06 26.9 0.0 9.6e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|389849024|ref|YP_006351260.1| - 5.4e-06 26.9 0.0 1.1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|389849024|ref|YP_006351260.1| - 9.3e-06 25.1 0.0 1.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|389849024|ref|YP_006351260.1| - 0.00027 20.6 0.2 0.0005 19.7 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|389849024|ref|YP_006351260.1| - 0.00041 21.0 0.1 0.00097 19.8 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|389849024|ref|YP_006351260.1| - 0.029 14.8 0.1 0.082 13.3 0.1 1.8 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|389849024|ref|YP_006351260.1| - 0.029 13.3 0.2 0.087 11.7 0.0 1.7 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family DapB_N PF01113.20 gi|389849024|ref|YP_006351260.1| - 0.032 14.4 0.7 0.091 12.9 0.2 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Peptidase_A2B PF12384.8 gi|389849024|ref|YP_006351260.1| - 0.096 12.2 0.6 0.85 9.1 0.0 2.2 1 1 0 2 2 2 0 Ty3 transposon peptidase DegT_DnrJ_EryC1 PF01041.17 gi|389849025|ref|YP_006351261.1| - 7e-121 403.9 0.0 7.9e-121 403.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|389849025|ref|YP_006351261.1| - 7.4e-09 35.3 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|389849025|ref|YP_006351261.1| - 1e-08 34.8 0.0 1.5e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|389849025|ref|YP_006351261.1| - 1.7e-05 24.0 0.0 2.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|389849025|ref|YP_006351261.1| - 0.085 11.4 0.0 0.53 8.8 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|389849025|ref|YP_006351261.1| - 0.13 11.0 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DprA_WH PF17782.1 gi|389849027|ref|YP_006351263.1| - 1.1e-05 25.5 0.4 1.3e-05 25.2 0.4 1.2 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|389849027|ref|YP_006351263.1| - 1.1e-05 25.2 0.2 1.5e-05 24.7 0.2 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389849027|ref|YP_006351263.1| - 0.0015 18.1 0.3 0.002 17.6 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389849027|ref|YP_006351263.1| - 0.0022 17.9 0.2 0.003 17.4 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389849027|ref|YP_006351263.1| - 0.012 15.6 0.2 0.014 15.3 0.2 1.1 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|389849027|ref|YP_006351263.1| - 0.035 13.9 0.8 0.055 13.3 0.8 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|389849027|ref|YP_006351263.1| - 0.042 13.7 0.2 0.056 13.3 0.2 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|389849027|ref|YP_006351263.1| - 0.19 12.1 0.0 0.26 11.7 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_10 PF04967.12 gi|389849028|ref|YP_006351264.1| - 2e-15 56.3 0.0 3.2e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|389849028|ref|YP_006351264.1| - 0.0039 17.0 0.1 0.0092 15.9 0.0 1.7 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|389849028|ref|YP_006351264.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|389849028|ref|YP_006351264.1| - 0.013 15.0 0.1 0.031 13.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389849028|ref|YP_006351264.1| - 0.16 11.9 0.0 0.47 10.4 0.0 1.8 1 0 0 1 1 1 0 MarR family SprT-like PF10263.9 gi|389849029|ref|YP_006351265.1| - 9.3e-08 31.9 0.0 1.7e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 SprT-like family CbiQ PF02361.16 gi|389849030|ref|YP_006351266.1| - 0.023 14.3 1.5 0.022 14.4 1.5 1.0 1 0 0 1 1 1 0 Cobalt transport protein Phage_holin_3_6 PF07332.11 gi|389849030|ref|YP_006351266.1| - 0.062 13.3 2.1 0.066 13.3 2.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III AAA_23 PF13476.6 gi|389849031|ref|YP_006351267.1| - 1.2e-09 39.0 19.3 1.2e-09 39.0 19.3 4.2 2 2 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|389849031|ref|YP_006351267.1| - 0.0002 21.2 11.4 0.0033 17.2 11.4 2.9 1 1 0 1 1 1 1 AAA ATPase domain CHASE6_C PF17150.4 gi|389849031|ref|YP_006351267.1| - 0.0011 19.5 7.4 0.0051 17.5 0.7 3.8 3 1 0 3 3 2 1 C-terminal domain of two-partite extracellular sensor domain Fib_alpha PF08702.10 gi|389849031|ref|YP_006351267.1| - 0.0012 19.0 31.3 0.061 13.5 3.0 4.1 2 2 1 4 4 4 2 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 gi|389849031|ref|YP_006351267.1| - 0.0015 17.3 12.1 0.0015 17.3 12.1 3.1 2 1 0 2 2 2 1 AAA domain ABC_tran_CTD PF16326.5 gi|389849031|ref|YP_006351267.1| - 0.0018 18.5 12.3 0.0018 18.5 12.3 7.7 2 2 5 7 7 7 2 ABC transporter C-terminal domain NPV_P10 PF05531.12 gi|389849031|ref|YP_006351267.1| - 0.0026 18.2 25.5 0.64 10.5 0.4 6.6 3 2 2 5 5 4 1 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|389849031|ref|YP_006351267.1| - 0.0058 15.6 62.5 0.039 12.8 21.3 4.3 2 2 2 4 4 4 4 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|389849031|ref|YP_006351267.1| - 0.0089 16.3 34.4 0.51 10.7 3.1 6.2 2 2 3 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 MscS_porin PF12795.7 gi|389849031|ref|YP_006351267.1| - 0.0095 15.5 55.3 0.073 12.6 20.8 3.3 2 1 1 3 3 3 2 Mechanosensitive ion channel porin domain Seryl_tRNA_N PF02403.22 gi|389849031|ref|YP_006351267.1| - 0.0099 16.1 53.2 0.057 13.7 9.6 5.3 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|389849031|ref|YP_006351267.1| - 0.014 15.4 31.6 0.72 9.9 1.0 5.1 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|389849031|ref|YP_006351267.1| - 0.019 14.0 45.8 0.072 12.2 9.7 3.6 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 zf-CpG_bind_C PF12269.8 gi|389849031|ref|YP_006351267.1| - 0.019 14.7 0.5 0.019 14.7 0.5 4.5 1 1 4 6 6 6 0 CpG binding protein zinc finger C terminal domain HemX PF04375.14 gi|389849031|ref|YP_006351267.1| - 0.039 13.2 35.5 0.13 11.5 4.8 4.1 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase GAS PF13851.6 gi|389849031|ref|YP_006351267.1| - 0.041 13.2 51.7 0.13 11.6 11.3 4.1 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding APG6_N PF17675.1 gi|389849031|ref|YP_006351267.1| - 0.1 13.1 78.7 0.47 11.0 27.7 5.2 2 2 2 4 4 4 0 Apg6 coiled-coil region Snapin_Pallidin PF14712.6 gi|389849031|ref|YP_006351267.1| - 0.12 12.8 34.4 0.52 10.8 5.6 5.5 2 2 3 5 5 5 0 Snapin/Pallidin SMC_N PF02463.19 gi|389849031|ref|YP_006351267.1| - 0.15 11.4 0.0 0.15 11.4 0.0 2.8 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain Rop PF01815.16 gi|389849031|ref|YP_006351267.1| - 0.16 11.9 0.1 0.16 11.9 0.1 4.3 6 0 0 6 6 3 0 Rop protein Baculo_PEP_C PF04513.12 gi|389849031|ref|YP_006351267.1| - 0.18 11.9 18.3 0.46 10.5 5.0 4.7 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4988 PF16378.5 gi|389849031|ref|YP_006351267.1| - 0.32 10.6 18.8 6 6.5 0.1 5.9 5 1 1 6 6 6 0 Domain of unknown function MAD PF05557.13 gi|389849031|ref|YP_006351267.1| - 0.37 9.1 52.1 0.74 8.1 25.1 2.2 2 0 0 2 2 2 0 Mitotic checkpoint protein OmpH PF03938.14 gi|389849031|ref|YP_006351267.1| - 0.45 10.9 45.7 2 8.8 9.1 4.4 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) TPR_MLP1_2 PF07926.12 gi|389849031|ref|YP_006351267.1| - 0.67 10.0 60.7 0.15 12.1 18.5 4.6 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein XhlA PF10779.9 gi|389849031|ref|YP_006351267.1| - 0.83 9.9 48.3 0.059 13.6 7.1 6.8 4 3 3 7 7 6 0 Haemolysin XhlA Perilipin PF03036.16 gi|389849031|ref|YP_006351267.1| - 1.3 8.0 19.2 0.01 14.9 5.0 2.2 2 0 0 2 2 2 0 Perilipin family DUF4407 PF14362.6 gi|389849031|ref|YP_006351267.1| - 1.9 7.7 48.8 2.8 7.2 7.7 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Occludin_ELL PF07303.13 gi|389849031|ref|YP_006351267.1| - 2.3 9.0 28.1 1.1 10.0 1.3 5.1 2 2 3 5 5 5 0 Occludin homology domain DUF3584 PF12128.8 gi|389849031|ref|YP_006351267.1| - 2.4 5.6 60.4 0.16 9.5 23.9 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF3584) PLAC9 PF15205.6 gi|389849031|ref|YP_006351267.1| - 3.6 8.1 6.9 23 5.5 0.0 4.2 4 0 0 4 4 3 0 Placenta-specific protein 9 CENP-F_leu_zip PF10473.9 gi|389849031|ref|YP_006351267.1| - 3.7 7.6 66.4 87 3.1 9.1 4.7 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FapA PF03961.13 gi|389849031|ref|YP_006351267.1| - 4.9 5.6 39.3 0.44 9.1 5.7 4.1 1 1 3 4 4 4 0 Flagellar Assembly Protein A TMF_TATA_bd PF12325.8 gi|389849031|ref|YP_006351267.1| - 5.2 7.3 65.6 0.93 9.7 6.9 5.6 2 2 2 5 5 5 0 TATA element modulatory factor 1 TATA binding DUF3450 PF11932.8 gi|389849031|ref|YP_006351267.1| - 5.6 6.2 51.8 2.8 7.2 8.6 4.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) Tropomyosin_1 PF12718.7 gi|389849031|ref|YP_006351267.1| - 7 6.8 74.0 12 6.1 0.4 4.5 2 2 2 4 4 4 0 Tropomyosin like Syntaxin-6_N PF09177.11 gi|389849031|ref|YP_006351267.1| - 8.1 7.1 48.7 3 8.4 8.6 5.7 2 2 3 5 5 5 0 Syntaxin 6, N-terminal DUF2408 PF10303.9 gi|389849031|ref|YP_006351267.1| - 8.8 6.9 36.3 0.1 13.2 8.6 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF2408) LXG PF04740.12 gi|389849031|ref|YP_006351267.1| - 9.7 5.8 26.2 1.4 8.6 9.6 4.3 2 2 2 4 4 4 0 LXG domain of WXG superfamily Usp PF00582.26 gi|389849033|ref|YP_006351269.1| - 3e-07 31.0 14.0 4.7e-05 23.9 0.4 3.2 2 1 1 3 3 3 2 Universal stress protein family AA_permease_2 PF13520.6 gi|389849034|ref|YP_006351270.1| - 3.2e-48 164.6 42.8 3.8e-48 164.4 42.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389849034|ref|YP_006351270.1| - 6.4e-42 143.7 41.3 7.6e-42 143.5 41.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|389849034|ref|YP_006351270.1| - 0.0045 17.0 1.9 0.0045 17.0 1.9 3.1 3 0 0 3 3 3 1 C-terminus of AA_permease Spore_permease PF03845.13 gi|389849034|ref|YP_006351270.1| - 0.035 13.0 20.3 0.1 11.4 14.9 3.5 2 1 0 2 2 2 0 Spore germination protein Phage_integrase PF00589.22 gi|389849035|ref|YP_006351271.1| - 3.8e-08 33.3 0.0 6.6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Crp PF00325.20 gi|389849035|ref|YP_006351271.1| - 0.078 12.6 0.1 0.22 11.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Phage_int_SAM_1 PF02899.17 gi|389849035|ref|YP_006351271.1| - 0.18 12.1 2.5 0.37 11.1 0.4 2.5 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain tRNA-synt_1b PF00579.25 gi|389849036|ref|YP_006351272.1| - 3.5e-24 85.7 0.0 2e-23 83.1 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DDE_Tnp_1 PF01609.21 gi|389849037|ref|YP_006351273.1| - 7.9e-07 28.9 3.2 1.3e-05 24.9 3.2 2.3 1 1 0 1 1 1 1 Transposase DDE domain SnoaL PF07366.12 gi|389849038|ref|YP_006351274.1| - 2e-31 108.4 0.0 2.4e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|389849038|ref|YP_006351274.1| - 4.4e-24 85.1 0.0 5.6e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|389849038|ref|YP_006351274.1| - 2.3e-06 28.0 0.0 3.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|389849038|ref|YP_006351274.1| - 0.00082 19.5 0.0 0.0012 19.0 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain HTH_10 PF04967.12 gi|389849039|ref|YP_006351275.1| - 1.7e-12 46.9 0.0 3.3e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|389849039|ref|YP_006351275.1| - 0.0074 16.1 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389849039|ref|YP_006351275.1| - 0.032 14.1 0.0 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF4249 PF14054.6 gi|389849039|ref|YP_006351275.1| - 0.033 13.8 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) BAT PF15915.5 gi|389849039|ref|YP_006351275.1| - 0.056 13.3 0.6 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 GAF and HTH_10 associated domain UPF0122 PF04297.14 gi|389849039|ref|YP_006351275.1| - 0.058 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.22 gi|389849039|ref|YP_006351275.1| - 0.091 12.7 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 MarR family Copper-bind PF00127.20 gi|389849041|ref|YP_006351277.1| - 5.5e-25 87.7 0.0 2.1e-11 44.1 0.0 2.9 2 1 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389849041|ref|YP_006351277.1| - 1.2e-05 25.3 0.0 0.083 13.0 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|389849041|ref|YP_006351277.1| - 0.013 15.4 0.6 0.024 14.5 0.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.20 gi|389849041|ref|YP_006351277.1| - 0.24 11.3 8.8 0.95 9.4 0.1 3.3 2 2 0 2 2 2 0 PKD domain NAD_synthase PF02540.17 gi|389849042|ref|YP_006351278.1| - 3.1e-44 150.9 0.0 4.9e-44 150.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 gi|389849042|ref|YP_006351278.1| - 2e-28 99.5 0.0 1e-27 97.1 0.0 1.9 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase Corona_nucleoca PF00937.18 gi|389849042|ref|YP_006351278.1| - 0.14 11.2 1.6 0.21 10.6 1.6 1.2 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein Peripla_BP_2 PF01497.18 gi|389849043|ref|YP_006351279.1| - 1.5e-17 64.0 0.0 2.4e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein HTH_AsnC-type PF13404.6 gi|389849044|ref|YP_006351280.1| - 5.8e-14 51.6 0.6 9.3e-14 51.0 0.6 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389849044|ref|YP_006351280.1| - 1.9e-13 49.7 1.1 1.1e-12 47.3 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389849044|ref|YP_006351280.1| - 0.00014 21.8 0.2 0.00025 20.9 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389849044|ref|YP_006351280.1| - 0.00024 21.1 0.9 0.0014 18.6 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849044|ref|YP_006351280.1| - 0.0028 17.6 0.3 0.0088 16.0 0.2 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|389849044|ref|YP_006351280.1| - 0.0031 17.4 0.0 0.048 13.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389849044|ref|YP_006351280.1| - 0.0036 17.1 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389849044|ref|YP_006351280.1| - 0.0083 16.0 0.1 0.019 14.8 0.1 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_28 PF13518.6 gi|389849044|ref|YP_006351280.1| - 0.013 15.6 0.1 0.022 14.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|389849044|ref|YP_006351280.1| - 0.017 15.0 0.1 0.049 13.5 0.1 1.8 2 0 0 2 2 1 0 MarR family HTH_7 PF02796.15 gi|389849044|ref|YP_006351280.1| - 0.018 15.1 0.0 0.042 13.9 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|389849044|ref|YP_006351280.1| - 0.02 14.6 0.2 0.046 13.5 0.2 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|389849044|ref|YP_006351280.1| - 0.023 14.5 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|389849044|ref|YP_006351280.1| - 0.03 14.2 0.1 0.09 12.7 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AsnC_trans_reg PF01037.21 gi|389849044|ref|YP_006351280.1| - 0.043 13.8 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Put_DNA-bind_N PF06971.13 gi|389849044|ref|YP_006351280.1| - 0.048 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Rrf2 PF02082.20 gi|389849044|ref|YP_006351280.1| - 0.076 13.4 0.2 1.1 9.6 0.1 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_8 PF02954.19 gi|389849044|ref|YP_006351280.1| - 0.084 12.7 0.6 0.17 11.7 0.6 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF1655 PF07868.11 gi|389849044|ref|YP_006351280.1| - 0.098 12.7 0.1 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1655) HTH_3 PF01381.22 gi|389849044|ref|YP_006351280.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Phage_rep_O PF04492.13 gi|389849044|ref|YP_006351280.1| - 0.13 12.8 0.0 0.64 10.6 0.0 2.0 1 1 1 2 2 2 0 Bacteriophage replication protein O Citrate_synt PF00285.21 gi|389849045|ref|YP_006351281.1| - 9.5e-110 367.0 0.0 1.1e-109 366.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain PKD PF00801.20 gi|389849046|ref|YP_006351282.1| - 6.2e-21 74.0 7.5 5.7e-11 42.1 0.8 3.1 3 0 0 3 3 3 2 PKD domain BiPBP_C PF06832.12 gi|389849046|ref|YP_006351282.1| - 0.00014 21.8 0.0 0.56 10.3 0.0 2.4 2 0 0 2 2 2 2 Penicillin-Binding Protein C-terminus Family REJ PF02010.15 gi|389849046|ref|YP_006351282.1| - 0.00033 19.6 11.4 0.0061 15.4 0.7 3.6 2 2 1 4 4 4 3 REJ domain HYR PF02494.16 gi|389849046|ref|YP_006351282.1| - 0.0019 18.5 2.4 0.05 13.9 0.2 2.9 2 0 0 2 2 2 1 HYR domain TAT_signal PF10518.9 gi|389849046|ref|YP_006351282.1| - 0.061 13.2 0.5 0.061 13.2 0.5 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TSP_3 PF02412.18 gi|389849046|ref|YP_006351282.1| - 0.26 11.0 5.0 4.5 7.0 1.0 3.0 2 0 0 2 2 2 0 Thrombospondin type 3 repeat PEMT PF04191.13 gi|389849047|ref|YP_006351283.1| - 2.3e-17 63.3 0.5 2.3e-17 63.3 0.5 1.7 2 0 0 2 2 2 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|389849047|ref|YP_006351283.1| - 1.8e-05 24.4 0.1 2.5e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.14 gi|389849047|ref|YP_006351283.1| - 7e-05 23.2 0.4 0.00033 21.0 0.1 2.1 2 1 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.17 gi|389849047|ref|YP_006351283.1| - 0.00035 19.4 0.1 0.00053 18.9 0.1 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family NnrU PF07298.11 gi|389849047|ref|YP_006351283.1| - 0.0011 18.5 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 NnrU protein Steroid_dh PF02544.16 gi|389849047|ref|YP_006351283.1| - 0.016 15.2 0.3 0.022 14.8 0.3 1.2 1 0 0 1 1 1 0 3-oxo-5-alpha-steroid 4-dehydrogenase HTH_10 PF04967.12 gi|389849048|ref|YP_006351284.1| - 5.7e-16 58.0 0.0 8.7e-16 57.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.27 gi|389849048|ref|YP_006351284.1| - 0.0076 16.2 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2222 PF09984.9 gi|389849048|ref|YP_006351284.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised signal transduction histidine kinase domain (DUF2222) ABC_tran PF00005.27 gi|389849049|ref|YP_006351285.1| - 6.1e-32 111.0 0.0 1e-31 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849049|ref|YP_006351285.1| - 4.8e-14 52.9 0.2 9e-08 32.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389849049|ref|YP_006351285.1| - 3.8e-06 27.5 0.1 1e-05 26.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|389849049|ref|YP_006351285.1| - 4e-05 23.5 0.0 0.064 13.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|389849049|ref|YP_006351285.1| - 0.00072 19.7 0.0 0.0041 17.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389849049|ref|YP_006351285.1| - 0.0011 18.5 0.0 0.031 13.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389849049|ref|YP_006351285.1| - 0.0029 17.3 0.1 0.0062 16.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389849049|ref|YP_006351285.1| - 0.0086 16.5 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|389849049|ref|YP_006351285.1| - 0.021 14.5 0.0 0.047 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389849049|ref|YP_006351285.1| - 0.035 14.0 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase MukB PF04310.12 gi|389849049|ref|YP_006351285.1| - 0.045 13.6 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal MMR_HSR1 PF01926.23 gi|389849049|ref|YP_006351285.1| - 0.065 13.3 0.1 0.12 12.5 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|389849049|ref|YP_006351285.1| - 0.11 12.8 0.1 0.62 10.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389849049|ref|YP_006351285.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_27 PF13514.6 gi|389849049|ref|YP_006351285.1| - 0.14 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|389849049|ref|YP_006351285.1| - 0.18 10.4 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|389849050|ref|YP_006351286.1| - 0.00016 20.9 12.1 0.00016 20.9 12.1 2.3 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389849050|ref|YP_006351286.1| - 1.1 8.7 12.0 0.051 13.1 5.0 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein Bac_luciferase PF00296.20 gi|389849051|ref|YP_006351287.1| - 5.1e-34 118.1 5.3 6.3e-34 117.8 5.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Na_H_antiporter PF03553.14 gi|389849052|ref|YP_006351288.1| - 4.9e-58 196.8 44.8 1.8e-52 178.5 24.0 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family ELFV_dehydrog PF00208.21 gi|389849054|ref|YP_006351290.1| - 6.7e-69 232.3 0.0 9.9e-69 231.7 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|389849054|ref|YP_006351290.1| - 5.7e-56 187.9 0.0 1.1e-55 187.1 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|389849054|ref|YP_006351290.1| - 0.00046 19.6 0.0 0.0012 18.3 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Geminin PF07412.12 gi|389849054|ref|YP_006351290.1| - 0.033 13.9 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Geminin Mrr_N PF14338.6 gi|389849055|ref|YP_006351291.1| - 0.0018 18.4 0.0 0.0021 18.1 0.0 1.1 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_10 PF04967.12 gi|389849056|ref|YP_006351292.1| - 3.8e-17 61.8 0.1 5.9e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389849056|ref|YP_006351292.1| - 6.4e-07 29.0 0.1 0.016 14.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|389849056|ref|YP_006351292.1| - 0.00011 21.7 0.1 0.00023 20.6 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|389849056|ref|YP_006351292.1| - 0.0028 17.4 0.1 0.0054 16.5 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|389849056|ref|YP_006351292.1| - 0.0032 17.0 0.0 0.019 14.5 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|389849056|ref|YP_006351292.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|389849056|ref|YP_006351292.1| - 0.019 15.1 0.1 0.049 13.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|389849056|ref|YP_006351292.1| - 0.036 14.1 0.0 0.07 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.16 gi|389849056|ref|YP_006351292.1| - 0.042 13.6 0.2 0.36 10.6 0.1 2.4 2 1 0 2 2 2 0 LexA DNA binding domain TetR_N PF00440.23 gi|389849056|ref|YP_006351292.1| - 0.073 12.9 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_ECF PF07638.11 gi|389849056|ref|YP_006351292.1| - 0.076 12.9 0.0 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 ECF sigma factor HTH_11 PF08279.12 gi|389849056|ref|YP_006351292.1| - 0.16 11.9 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain PfkB PF00294.24 gi|389849057|ref|YP_006351293.1| - 1.7e-52 178.6 0.0 2e-52 178.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Aldolase PF01081.19 gi|389849058|ref|YP_006351294.1| - 1.1e-41 142.4 2.2 1.3e-41 142.2 2.2 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.17 gi|389849058|ref|YP_006351294.1| - 0.00068 19.0 0.2 0.005 16.2 0.2 2.3 1 1 0 1 1 1 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|389849058|ref|YP_006351294.1| - 0.0059 15.9 9.2 1.4 8.1 0.2 3.0 1 1 2 3 3 3 3 Dihydroorotate dehydrogenase TadZ_N PF16968.5 gi|389849058|ref|YP_006351294.1| - 0.012 15.3 1.4 1.6 8.4 0.1 2.5 2 1 0 2 2 2 0 Pilus assembly protein TadZ N-terminal QRPTase_C PF01729.19 gi|389849058|ref|YP_006351294.1| - 0.042 13.6 0.0 0.39 10.5 0.0 2.2 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.25 gi|389849058|ref|YP_006351294.1| - 0.31 10.0 9.6 0.04 12.9 1.6 2.5 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain Ribonuc_L-PSP PF01042.21 gi|389849059|ref|YP_006351295.1| - 3.8e-40 136.7 0.0 4.3e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP adh_short_C2 PF13561.6 gi|389849060|ref|YP_006351296.1| - 7.6e-62 208.9 0.1 9e-62 208.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389849060|ref|YP_006351296.1| - 1.4e-48 165.0 0.1 1.6e-48 164.7 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849060|ref|YP_006351296.1| - 5.2e-10 39.5 0.1 7.3e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389849060|ref|YP_006351296.1| - 0.00015 21.3 0.1 0.00046 19.7 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|389849060|ref|YP_006351296.1| - 0.0017 18.3 0.2 0.0025 17.7 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|389849060|ref|YP_006351296.1| - 0.098 12.5 0.1 0.35 10.7 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MR_MLE_C PF13378.6 gi|389849061|ref|YP_006351297.1| - 1.7e-47 161.8 0.0 2.6e-47 161.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389849061|ref|YP_006351297.1| - 1.5e-16 60.6 0.0 3.4e-16 59.5 0.0 1.6 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PmbA_TldD PF01523.16 gi|389849061|ref|YP_006351297.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative modulator of DNA gyrase GHL10 PF02638.15 gi|389849062|ref|YP_006351298.1| - 4.9e-05 22.6 0.0 8.5e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 DUF5036 PF16439.5 gi|389849062|ref|YP_006351298.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5036) BPD_transp_1 PF00528.22 gi|389849063|ref|YP_006351299.1| - 3.9e-18 65.8 17.5 3.9e-18 65.8 17.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UL42 PF17638.2 gi|389849063|ref|YP_006351299.1| - 6.8 6.7 9.3 4.9 7.1 0.4 2.9 2 1 1 3 3 3 0 HCMV UL42 BPD_transp_1 PF00528.22 gi|389849064|ref|YP_006351300.1| - 3.3e-22 79.1 14.6 6.2e-22 78.2 14.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|389849065|ref|YP_006351301.1| - 1.5e-44 153.2 0.4 2.3e-44 152.7 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|389849065|ref|YP_006351301.1| - 6.8e-39 134.4 0.1 1.1e-38 133.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|389849065|ref|YP_006351301.1| - 9.6e-05 21.9 0.0 0.14 11.5 0.1 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389849065|ref|YP_006351301.1| - 0.0031 17.3 0.0 0.0053 16.5 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389849065|ref|YP_006351301.1| - 0.14 12.1 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Creatininase PF02633.14 gi|389849066|ref|YP_006351302.1| - 9.7e-60 202.0 0.0 1.1e-59 201.8 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.27 gi|389849067|ref|YP_006351303.1| - 1.9e-31 109.4 0.0 3.3e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|389849067|ref|YP_006351303.1| - 6.1e-09 36.6 0.0 5.7e-08 33.5 0.0 2.8 4 0 0 4 4 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|389849067|ref|YP_006351303.1| - 3.5e-08 33.5 0.1 1.4e-07 31.6 0.1 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|389849067|ref|YP_006351303.1| - 1.1e-06 28.7 0.0 0.013 15.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849067|ref|YP_006351303.1| - 1.2e-05 24.8 0.1 2.8e-05 23.7 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|389849067|ref|YP_006351303.1| - 0.00029 20.8 0.0 0.00046 20.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|389849067|ref|YP_006351303.1| - 0.0008 19.8 0.2 0.0067 16.9 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|389849067|ref|YP_006351303.1| - 0.00097 19.4 0.1 0.0037 17.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|389849067|ref|YP_006351303.1| - 0.0032 17.9 0.4 0.0032 17.9 0.4 2.0 2 1 0 2 2 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|389849067|ref|YP_006351303.1| - 0.0036 17.8 2.4 0.12 13.0 0.0 3.9 5 0 0 5 5 3 1 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 gi|389849067|ref|YP_006351303.1| - 0.0074 16.2 0.9 0.014 15.4 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 gi|389849067|ref|YP_006351303.1| - 0.0084 15.7 0.1 0.53 9.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|389849067|ref|YP_006351303.1| - 0.016 14.9 0.1 0.035 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|389849067|ref|YP_006351303.1| - 0.026 14.7 0.3 0.054 13.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|389849067|ref|YP_006351303.1| - 0.036 14.0 0.3 2.9 7.8 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|389849067|ref|YP_006351303.1| - 0.091 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|389849067|ref|YP_006351303.1| - 0.12 11.1 0.1 0.39 9.5 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|389849067|ref|YP_006351303.1| - 0.18 11.4 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|389849067|ref|YP_006351303.1| - 0.21 11.8 1.6 0.32 11.2 0.3 1.9 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|389849067|ref|YP_006351303.1| - 0.22 11.9 0.1 0.96 9.9 0.1 2.1 2 1 0 2 2 2 0 RNA helicase IclR PF01614.18 gi|389849069|ref|YP_006351305.1| - 4.5e-33 113.8 0.0 7.9e-33 113.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389849069|ref|YP_006351305.1| - 3.7e-09 36.2 0.0 4.3e-08 32.8 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|389849069|ref|YP_006351305.1| - 1.7e-06 27.8 0.0 5.5e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|389849069|ref|YP_006351305.1| - 8.3e-06 25.6 0.0 1.9e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389849069|ref|YP_006351305.1| - 0.00035 20.6 0.0 0.0013 18.8 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389849069|ref|YP_006351305.1| - 0.00099 19.0 0.0 0.0031 17.4 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|389849069|ref|YP_006351305.1| - 0.002 18.0 0.0 0.053 13.4 0.0 2.9 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 gi|389849069|ref|YP_006351305.1| - 0.013 15.0 0.0 0.044 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|389849069|ref|YP_006351305.1| - 0.091 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|389849069|ref|YP_006351305.1| - 0.097 13.0 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_34 PF13601.6 gi|389849069|ref|YP_006351305.1| - 0.13 12.5 0.0 0.35 11.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Abhydrolase_1 PF00561.20 gi|389849070|ref|YP_006351306.1| - 2.4e-20 73.3 0.0 2.7e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389849070|ref|YP_006351306.1| - 6e-17 63.0 1.1 7.4e-17 62.7 1.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389849070|ref|YP_006351306.1| - 2.8e-15 56.2 0.0 3.6e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|389849070|ref|YP_006351306.1| - 0.0087 15.5 0.0 0.048 13.1 0.0 1.8 1 1 1 2 2 2 1 Prolyl oligopeptidase family Esterase PF00756.20 gi|389849070|ref|YP_006351306.1| - 0.019 14.6 0.1 0.024 14.3 0.1 1.4 1 1 0 1 1 1 0 Putative esterase Thioesterase PF00975.20 gi|389849070|ref|YP_006351306.1| - 0.092 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain PGAP1 PF07819.13 gi|389849070|ref|YP_006351306.1| - 0.17 11.6 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Abhydrolase_6 PF12697.7 gi|389849071|ref|YP_006351307.1| - 0.0008 20.1 0.0 0.00084 20.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389849071|ref|YP_006351307.1| - 0.02 14.6 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|389849071|ref|YP_006351307.1| - 0.036 14.2 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein PAS_9 PF13426.7 gi|389849072|ref|YP_006351308.1| - 3e-33 114.2 0.0 6.3e-20 71.4 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|389849072|ref|YP_006351308.1| - 4.6e-27 94.1 0.0 1.5e-14 54.0 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|389849072|ref|YP_006351308.1| - 8.3e-27 93.4 0.0 3.8e-14 52.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|389849072|ref|YP_006351308.1| - 9e-27 93.5 1.2 2.6e-12 47.0 0.0 3.0 3 0 0 3 3 2 2 PAS fold HATPase_c PF02518.26 gi|389849072|ref|YP_006351308.1| - 9.8e-15 55.0 0.0 4.3e-13 49.7 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|389849072|ref|YP_006351308.1| - 1.2e-11 45.1 0.0 2.5e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|389849072|ref|YP_006351308.1| - 1.4e-09 38.4 0.1 2.5e-08 34.3 0.0 2.7 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|389849072|ref|YP_006351308.1| - 9.4e-08 32.1 0.0 2.9e-07 30.5 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|389849072|ref|YP_006351308.1| - 1.3e-07 31.5 0.0 0.0015 18.5 0.0 3.2 3 0 0 3 3 3 2 PAS domain GAF PF01590.26 gi|389849072|ref|YP_006351308.1| - 2.4e-07 31.5 0.1 1.3e-06 29.1 0.0 2.3 3 0 0 3 3 2 1 GAF domain HATPase_c_3 PF13589.6 gi|389849072|ref|YP_006351308.1| - 8.6e-05 22.4 0.0 0.00018 21.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|389849072|ref|YP_006351308.1| - 0.0011 19.0 1.9 0.0011 19.0 1.9 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|389849072|ref|YP_006351308.1| - 0.069 12.7 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|389849072|ref|YP_006351308.1| - 0.1 12.4 0.1 0.22 11.2 0.1 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain BRD4_CDT PF17105.5 gi|389849072|ref|YP_006351308.1| - 4.9 6.8 7.0 27 4.4 1.5 2.8 2 0 0 2 2 2 0 C-terminal domain of bromodomain protein 4 Hydantoinase_B PF02538.14 gi|389849073|ref|YP_006351309.1| - 8.7e-212 704.1 1.7 9.8e-212 703.9 1.7 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|389849074|ref|YP_006351310.1| - 9.4e-95 317.2 13.1 1.3e-94 316.7 8.0 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|389849074|ref|YP_006351310.1| - 9e-51 172.1 0.5 9e-51 172.1 0.5 2.4 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|389849074|ref|YP_006351310.1| - 0.00026 19.7 5.2 0.011 14.3 0.8 2.3 2 0 0 2 2 2 2 MutL protein EutA PF06277.11 gi|389849074|ref|YP_006351310.1| - 0.014 14.3 0.4 0.026 13.4 0.4 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutA BcrAD_BadFG PF01869.20 gi|389849074|ref|YP_006351310.1| - 0.019 14.5 0.4 0.019 14.5 0.4 2.7 2 1 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family Amdase PF17645.1 gi|389849074|ref|YP_006351310.1| - 0.066 12.8 1.0 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 Arylmalonate decarboxylase Pilus_CpaD PF09476.10 gi|389849074|ref|YP_006351310.1| - 0.1 12.3 1.5 3.1 7.5 0.1 2.7 3 0 0 3 3 3 0 Pilus biogenesis CpaD protein (pilus_cpaD) Nramp PF01566.18 gi|389849075|ref|YP_006351311.1| - 3.4e-95 319.0 24.0 4.4e-95 318.7 24.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PDGLE PF13190.6 gi|389849075|ref|YP_006351311.1| - 0.12 12.3 3.8 0.43 10.5 0.1 3.2 2 1 0 2 2 2 0 PDGLE domain RHH_1 PF01402.21 gi|389849078|ref|YP_006351314.1| - 6.2e-07 29.1 0.0 1.5e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|389849078|ref|YP_006351314.1| - 2.1e-05 24.4 0.0 3.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain PUB PF09409.10 gi|389849078|ref|YP_006351314.1| - 0.057 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 PUB domain TFIID_NTD2 PF04494.15 gi|389849078|ref|YP_006351314.1| - 0.077 13.2 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit, NTD2 domain Med13_C PF06333.12 gi|389849079|ref|YP_006351315.1| - 0.19 11.0 2.3 0.23 10.7 2.3 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Trypan_PARP PF05887.11 gi|389849079|ref|YP_006351315.1| - 0.23 11.4 3.1 0.43 10.6 3.1 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF1387 PF07139.11 gi|389849079|ref|YP_006351315.1| - 0.81 9.4 4.3 1.2 8.8 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1387) HHH_2 PF12826.7 gi|389849080|ref|YP_006351316.1| - 0.002 18.2 0.0 0.0044 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|389849080|ref|YP_006351316.1| - 0.0071 16.9 0.0 0.013 16.1 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF2543 PF10820.8 gi|389849080|ref|YP_006351316.1| - 0.01 16.0 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) Rhamno_transf PF11316.8 gi|389849081|ref|YP_006351317.1| - 0.089 12.2 0.1 0.089 12.2 0.1 1.2 1 0 0 1 1 1 0 Putative rhamnosyl transferase GFO_IDH_MocA PF01408.22 gi|389849083|ref|YP_006351319.1| - 3.6e-26 92.3 0.1 1e-25 90.9 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|389849083|ref|YP_006351319.1| - 1.3e-08 34.8 0.0 2.9e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|389849083|ref|YP_006351319.1| - 0.009 16.7 0.0 0.019 15.6 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain F420_oxidored PF03807.17 gi|389849083|ref|YP_006351319.1| - 0.017 15.7 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.24 gi|389849083|ref|YP_006351319.1| - 0.018 15.3 0.0 0.037 14.4 0.0 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|389849083|ref|YP_006351319.1| - 0.042 14.3 0.1 0.093 13.2 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain Rossmann-like PF10727.9 gi|389849083|ref|YP_006351319.1| - 0.099 12.5 0.3 0.24 11.2 0.2 1.8 1 1 0 1 1 1 0 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|389849083|ref|YP_006351319.1| - 0.11 11.8 0.1 0.34 10.3 0.0 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF362 PF04015.12 gi|389849084|ref|YP_006351320.1| - 9e-09 35.9 0.3 1.6e-08 35.0 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Epimerase PF01370.21 gi|389849085|ref|YP_006351321.1| - 3.8e-33 114.9 0.0 5.4e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|389849085|ref|YP_006351321.1| - 1.5e-24 86.5 0.0 2.2e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|389849085|ref|YP_006351321.1| - 6.6e-22 78.3 0.0 1.5e-21 77.2 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|389849085|ref|YP_006351321.1| - 1.4e-17 64.1 0.4 2e-17 63.7 0.4 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|389849085|ref|YP_006351321.1| - 2e-13 50.1 1.2 1.1e-08 34.6 0.1 2.8 1 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|389849085|ref|YP_006351321.1| - 7.7e-13 48.2 0.1 1.4e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|389849085|ref|YP_006351321.1| - 7.6e-09 35.1 0.1 5.2e-08 32.4 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|389849085|ref|YP_006351321.1| - 3.9e-05 23.3 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|389849085|ref|YP_006351321.1| - 0.00074 19.0 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849085|ref|YP_006351321.1| - 0.00084 19.3 0.7 0.0047 16.9 0.7 2.2 1 1 0 1 1 1 1 KR domain CoA_binding_2 PF13380.6 gi|389849085|ref|YP_006351321.1| - 0.037 14.5 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain ATPgrasp_Ter PF15632.6 gi|389849086|ref|YP_006351322.1| - 1.9e-06 27.7 0.0 3.2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|389849086|ref|YP_006351322.1| - 1.4e-05 25.2 0.0 4.2e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|389849086|ref|YP_006351322.1| - 0.00098 18.7 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TAT_signal PF10518.9 gi|389849087|ref|YP_006351323.1| - 0.059 13.2 0.1 0.098 12.5 0.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|389849087|ref|YP_006351323.1| - 0.2 11.5 9.3 27 4.6 0.9 3.1 1 1 1 2 2 2 0 Right handed beta helix region Glycos_transf_2 PF00535.26 gi|389849089|ref|YP_006351325.1| - 1.2e-22 80.5 0.0 1.8e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|389849089|ref|YP_006351325.1| - 2.8e-06 27.8 0.0 5.4e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|389849089|ref|YP_006351325.1| - 2e-05 24.6 0.1 4e-05 23.6 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF308 PF03729.13 gi|389849089|ref|YP_006351325.1| - 0.0022 18.3 3.1 0.0087 16.4 1.0 2.2 2 0 0 2 2 2 1 Short repeat of unknown function (DUF308) DUF1616 PF07760.11 gi|389849090|ref|YP_006351326.1| - 1.6e-85 287.0 1.4 2.1e-85 286.7 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Transp_cyt_pur PF02133.15 gi|389849090|ref|YP_006351326.1| - 0.00055 18.8 1.0 0.00093 18.1 1.0 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin TAT_signal PF10518.9 gi|389849091|ref|YP_006351327.1| - 0.0012 18.6 1.3 0.0034 17.2 1.3 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ICAP-1_inte_bdg PF10480.9 gi|389849091|ref|YP_006351327.1| - 1.3 9.0 11.5 5 7.1 0.2 3.7 4 0 0 4 4 4 0 Beta-1 integrin binding protein Polysacc_synt_3 PF13440.6 gi|389849092|ref|YP_006351328.1| - 2.3e-77 260.1 5.8 2.3e-77 260.1 5.8 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|389849092|ref|YP_006351328.1| - 2.7e-35 122.1 10.4 2.7e-35 122.1 10.4 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|389849092|ref|YP_006351328.1| - 3e-11 43.6 11.7 3e-11 43.6 11.7 3.8 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Asn_synthase PF00733.21 gi|389849094|ref|YP_006351330.1| - 1.8e-14 54.2 1.3 2.7e-08 33.9 0.1 3.3 3 1 0 3 3 3 3 Asparagine synthase GATase_7 PF13537.6 gi|389849094|ref|YP_006351330.1| - 0.001 18.9 0.0 0.0038 17.1 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain Nucleolin_bd PF16725.5 gi|389849094|ref|YP_006351330.1| - 0.071 12.8 0.1 0.65 9.7 0.1 2.5 2 0 0 2 2 2 0 Nucleolin binding domain Cation_efflux PF01545.21 gi|389849095|ref|YP_006351331.1| - 0.021 14.5 0.8 0.026 14.2 0.8 1.1 1 0 0 1 1 1 0 Cation efflux family NADH_dh_m_C1 PF15088.6 gi|389849095|ref|YP_006351331.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.6 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial DUF5353 PF17304.2 gi|389849095|ref|YP_006351331.1| - 0.12 12.1 2.1 0.26 11.1 1.8 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5353) HTH_20 PF12840.7 gi|389849096|ref|YP_006351332.1| - 7.8e-11 41.9 0.0 1.2e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389849096|ref|YP_006351332.1| - 6.4e-07 29.1 0.0 1.1e-06 28.3 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389849096|ref|YP_006351332.1| - 4.6e-06 26.4 0.0 7.8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389849096|ref|YP_006351332.1| - 1.6e-05 24.7 0.1 2.2e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389849096|ref|YP_006351332.1| - 8.9e-05 22.0 0.0 0.00022 20.7 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|389849096|ref|YP_006351332.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|389849096|ref|YP_006351332.1| - 0.0002 21.1 0.0 0.00046 20.0 0.0 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FUR PF01475.19 gi|389849096|ref|YP_006351332.1| - 0.00078 19.6 0.1 0.00099 19.2 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_Crp_2 PF13545.6 gi|389849096|ref|YP_006351332.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|389849096|ref|YP_006351332.1| - 0.0015 18.3 0.0 0.0034 17.2 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389849096|ref|YP_006351332.1| - 0.0035 17.2 0.0 0.0072 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|389849096|ref|YP_006351332.1| - 0.0036 17.2 0.1 0.0063 16.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family ArsR PF09824.9 gi|389849096|ref|YP_006351332.1| - 0.0067 16.0 0.0 0.0078 15.8 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_36 PF13730.6 gi|389849096|ref|YP_006351332.1| - 0.0085 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1492 PF07374.11 gi|389849096|ref|YP_006351332.1| - 0.012 15.8 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) Fe_dep_repress PF01325.19 gi|389849096|ref|YP_006351332.1| - 0.031 14.5 0.2 0.058 13.6 0.2 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.23 gi|389849096|ref|YP_006351332.1| - 0.048 13.4 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family B-block_TFIIIC PF04182.12 gi|389849096|ref|YP_006351332.1| - 0.053 13.7 0.0 0.066 13.4 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Mga PF05043.13 gi|389849096|ref|YP_006351332.1| - 0.12 13.0 0.1 0.27 11.9 0.0 1.6 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|389849096|ref|YP_006351332.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 LolA_like PF17131.4 gi|389849097|ref|YP_006351333.1| - 6.2e-06 26.1 0.2 1.8e-05 24.6 0.1 1.7 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|389849097|ref|YP_006351333.1| - 0.00034 20.2 0.4 0.0045 16.5 0.0 2.6 3 0 0 3 3 3 1 MucB/RseB N-terminal domain DUF2092 PF09865.9 gi|389849097|ref|YP_006351333.1| - 0.0029 17.0 0.6 0.094 12.1 0.1 2.4 2 0 0 2 2 2 1 Predicted periplasmic protein (DUF2092) DUF1571 PF07608.11 gi|389849097|ref|YP_006351333.1| - 0.023 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) Glycos_transf_1 PF00534.20 gi|389849098|ref|YP_006351334.1| - 2.7e-25 88.9 0.0 4.5e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|389849098|ref|YP_006351334.1| - 4.4e-25 88.7 0.1 1e-24 87.5 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|389849098|ref|YP_006351334.1| - 7.1e-16 58.7 2.1 4e-15 56.2 2.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|389849098|ref|YP_006351334.1| - 9.4e-13 48.9 5.4 3.5e-12 47.1 3.5 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|389849098|ref|YP_006351334.1| - 1.8e-10 41.1 0.0 5.6e-10 39.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|389849098|ref|YP_006351334.1| - 0.0025 17.5 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|389849098|ref|YP_006351334.1| - 0.035 14.1 0.2 0.071 13.1 0.1 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like DUF354 PF04007.12 gi|389849099|ref|YP_006351335.1| - 0.0026 16.9 0.0 0.0034 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_1_2 PF13524.6 gi|389849099|ref|YP_006351335.1| - 0.022 15.2 0.1 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 YdjM PF04307.14 gi|389849100|ref|YP_006351336.1| - 2.4e-11 43.3 8.4 3.2e-11 42.8 8.4 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Hexapep PF00132.24 gi|389849101|ref|YP_006351337.1| - 1.4e-25 88.0 17.6 4.5e-08 32.5 0.5 5.0 3 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389849101|ref|YP_006351337.1| - 1e-17 63.5 13.8 1.2e-05 24.9 0.5 5.7 5 1 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase Cas6b_C PF17262.2 gi|389849101|ref|YP_006351337.1| - 0.15 12.2 0.1 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Cas6b C-terminal domain DegT_DnrJ_EryC1 PF01041.17 gi|389849102|ref|YP_006351338.1| - 2.6e-117 392.1 0.1 3e-117 392.0 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|389849102|ref|YP_006351338.1| - 6e-08 32.0 0.0 7.2e-06 25.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|389849102|ref|YP_006351338.1| - 6.8e-07 28.8 0.1 1.4e-06 27.8 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|389849102|ref|YP_006351338.1| - 7.9e-06 25.3 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|389849102|ref|YP_006351338.1| - 0.0081 14.7 0.0 0.038 12.5 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.22 gi|389849103|ref|YP_006351339.1| - 3.5e-20 73.0 0.4 7.6e-20 71.9 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|389849103|ref|YP_006351339.1| - 1.7e-05 25.1 0.3 0.0013 19.0 0.4 3.0 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|389849103|ref|YP_006351339.1| - 0.00033 20.7 0.1 0.072 13.1 0.0 2.6 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_3 PF03447.16 gi|389849103|ref|YP_006351339.1| - 0.00041 21.0 0.3 0.04 14.6 0.2 2.5 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|389849103|ref|YP_006351339.1| - 0.00064 20.3 0.1 0.0066 17.0 0.0 2.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|389849103|ref|YP_006351339.1| - 0.011 15.8 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|389849103|ref|YP_006351339.1| - 0.011 15.1 0.1 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|389849103|ref|YP_006351339.1| - 0.013 16.2 0.8 0.044 14.5 0.2 2.1 2 0 0 2 2 2 0 CoA binding domain IlvN PF07991.12 gi|389849103|ref|YP_006351339.1| - 0.027 14.0 0.1 0.081 12.5 0.1 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_11 PF14833.6 gi|389849103|ref|YP_006351339.1| - 0.046 14.0 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CBM60 PF16841.5 gi|389849103|ref|YP_006351339.1| - 0.061 13.8 1.3 0.089 13.2 0.1 1.8 2 0 0 2 2 2 0 Ca-dependent carbohydrate-binding module xylan-binding Semialdhyde_dh PF01118.24 gi|389849103|ref|YP_006351339.1| - 0.087 13.3 0.1 0.87 10.0 0.1 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|389849104|ref|YP_006351340.1| - 7.5e-42 143.0 0.1 1.3e-41 142.2 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|389849104|ref|YP_006351340.1| - 1.1e-21 76.8 0.0 1.9e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|389849104|ref|YP_006351340.1| - 9.6e-16 58.1 0.0 2.4e-15 56.8 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 gi|389849104|ref|YP_006351340.1| - 2.3e-05 23.9 0.0 0.021 14.2 0.0 3.2 3 1 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|389849104|ref|YP_006351340.1| - 8e-05 22.9 0.0 0.00074 19.7 0.0 2.2 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|389849104|ref|YP_006351340.1| - 0.0008 19.4 0.0 0.002 18.1 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|389849104|ref|YP_006351340.1| - 0.0031 17.4 0.2 0.0058 16.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389849104|ref|YP_006351340.1| - 0.053 13.8 4.4 0.1 12.8 0.0 3.4 4 0 0 4 4 4 0 TrkA-N domain Epimerase_2 PF02350.19 gi|389849105|ref|YP_006351341.1| - 4.5e-104 348.0 0.0 5.2e-104 347.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.6 gi|389849105|ref|YP_006351341.1| - 0.00045 20.7 0.2 0.0011 19.5 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Metallophos_3 PF14582.6 gi|389849105|ref|YP_006351341.1| - 0.0048 16.3 0.1 0.22 10.8 0.0 2.5 3 0 0 3 3 3 1 Metallophosphoesterase, calcineurin superfamily baeRF_family2 PF18844.1 gi|389849105|ref|YP_006351341.1| - 0.19 11.7 3.1 0.33 11.0 0.4 2.4 1 1 1 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 Prenyltrans PF00432.21 gi|389849108|ref|YP_006351344.1| - 0.0077 16.0 0.5 0.032 14.0 0.0 2.3 3 0 0 3 3 3 1 Prenyltransferase and squalene oxidase repeat Glyco_hydro_76 PF03663.14 gi|389849108|ref|YP_006351344.1| - 0.041 13.4 0.2 0.25 10.8 0.0 2.3 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 Acetyltransf_6 PF13480.7 gi|389849109|ref|YP_006351345.1| - 1.3e-20 74.0 0.0 2.3e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|389849109|ref|YP_006351345.1| - 4.1e-07 29.2 0.1 0.00065 18.7 0.0 2.7 3 0 0 3 3 3 2 FemAB family Acetyltransf_6 PF13480.7 gi|389849110|ref|YP_006351346.1| - 9.3e-23 81.0 0.0 8.2e-22 77.9 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|389849110|ref|YP_006351346.1| - 0.00092 18.2 0.0 0.024 13.5 0.0 2.5 3 0 0 3 3 3 1 FemAB family HTH_20 PF12840.7 gi|389849111|ref|YP_006351347.1| - 0.00041 20.4 0.1 0.00051 20.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849111|ref|YP_006351347.1| - 0.0018 18.2 0.4 0.0036 17.2 0.3 1.6 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|389849111|ref|YP_006351347.1| - 0.0026 17.6 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|389849111|ref|YP_006351347.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|389849111|ref|YP_006351347.1| - 0.029 14.3 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|389849111|ref|YP_006351347.1| - 0.039 13.9 0.0 0.045 13.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|389849111|ref|YP_006351347.1| - 0.045 13.8 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|389849111|ref|YP_006351347.1| - 0.072 13.0 0.4 0.1 12.5 0.4 1.2 1 0 0 1 1 1 0 MarR family SurE PF01975.17 gi|389849112|ref|YP_006351348.1| - 4.4e-46 157.1 0.0 5.6e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE CBS PF00571.28 gi|389849113|ref|YP_006351349.1| - 1.3e-28 99.2 3.0 3.1e-14 53.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain Orthopox_F6 PF06601.12 gi|389849113|ref|YP_006351349.1| - 0.039 14.1 0.4 0.089 13.0 0.1 1.7 2 0 0 2 2 2 0 Orthopoxvirus F6 protein PMSR PF01625.21 gi|389849115|ref|YP_006351351.1| - 1.3e-65 220.3 1.9 1.5e-65 220.1 1.9 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|389849115|ref|YP_006351351.1| - 0.067 13.2 1.3 0.12 12.4 1.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) AAA_31 PF13614.6 gi|389849117|ref|YP_006351353.1| - 1.9e-34 119.1 0.0 2.6e-34 118.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389849117|ref|YP_006351353.1| - 2e-16 60.2 0.0 2.8e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|389849117|ref|YP_006351353.1| - 3.5e-09 36.5 1.9 7.3e-07 28.9 0.2 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|389849117|ref|YP_006351353.1| - 6e-05 22.5 0.6 0.0016 17.8 0.2 2.3 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|389849117|ref|YP_006351353.1| - 6.3e-05 22.3 0.5 0.0013 18.0 0.1 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|389849117|ref|YP_006351353.1| - 0.00017 21.1 0.0 0.0006 19.4 0.1 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|389849117|ref|YP_006351353.1| - 0.0048 16.4 0.0 0.029 13.8 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|389849117|ref|YP_006351353.1| - 0.16 11.3 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein CLP1_P PF16575.5 gi|389849117|ref|YP_006351353.1| - 0.23 11.2 0.0 0.37 10.6 0.0 1.2 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop LAP1C PF05609.12 gi|389849119|ref|YP_006351355.1| - 0.69 8.9 13.1 0.87 8.6 13.1 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) Raftlin PF15250.6 gi|389849119|ref|YP_006351355.1| - 0.8 8.4 10.0 0.98 8.1 10.0 1.0 1 0 0 1 1 1 0 Raftlin DUF4662 PF15578.6 gi|389849119|ref|YP_006351355.1| - 5.4 6.7 6.5 7.6 6.2 6.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4662) OrfB_Zn_ribbon PF07282.11 gi|389849120|ref|YP_006351356.1| - 1.7e-23 82.3 1.4 2.1e-23 82.0 1.4 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|389849120|ref|YP_006351356.1| - 0.00028 21.1 1.0 0.00044 20.5 1.0 1.2 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|389849120|ref|YP_006351356.1| - 0.0017 18.4 0.8 0.0023 18.0 0.8 1.3 1 0 0 1 1 1 1 Ribosomal L37ae protein family A2L_zn_ribbon PF08792.10 gi|389849120|ref|YP_006351356.1| - 0.018 14.7 2.5 0.033 13.9 2.5 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|389849120|ref|YP_006351356.1| - 0.02 14.9 4.3 0.031 14.3 4.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|389849120|ref|YP_006351356.1| - 0.027 14.0 5.4 0.036 13.6 4.3 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_IS605 PF01385.19 gi|389849121|ref|YP_006351357.1| - 3.2e-08 33.8 0.0 3.5e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Flagellin_D3 PF08884.11 gi|389849121|ref|YP_006351357.1| - 0.037 14.4 0.3 0.042 14.3 0.3 1.2 1 0 0 1 1 1 0 Flagellin D3 domain Cdc6_C PF09079.11 gi|389849123|ref|YP_006351359.1| - 1e-18 67.1 0.1 2.5e-18 65.8 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389849123|ref|YP_006351359.1| - 1.3e-12 48.1 0.0 5.4e-12 46.2 0.0 2.0 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|389849123|ref|YP_006351359.1| - 1.3e-11 45.2 0.4 1.7e-10 41.5 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|389849123|ref|YP_006351359.1| - 4.2e-05 24.0 0.0 0.00015 22.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|389849123|ref|YP_006351359.1| - 0.00035 19.8 0.0 0.00084 18.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|389849123|ref|YP_006351359.1| - 0.00079 19.4 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|389849123|ref|YP_006351359.1| - 0.002 17.4 0.0 0.003 16.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain TniB PF05621.11 gi|389849123|ref|YP_006351359.1| - 0.0037 16.7 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|389849123|ref|YP_006351359.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|389849123|ref|YP_006351359.1| - 0.023 14.7 0.6 0.41 10.6 0.2 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|389849123|ref|YP_006351359.1| - 0.03 14.9 0.0 0.23 12.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|389849123|ref|YP_006351359.1| - 0.045 13.5 0.0 2 8.1 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_32 PF13654.6 gi|389849123|ref|YP_006351359.1| - 0.069 11.9 0.0 1.1 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|389849123|ref|YP_006351359.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.22 gi|389849123|ref|YP_006351359.1| - 0.13 12.7 0.1 0.3 11.5 0.1 1.8 1 1 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|389849123|ref|YP_006351359.1| - 0.14 11.4 0.0 0.32 10.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|389849123|ref|YP_006351359.1| - 0.17 11.4 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|389849123|ref|YP_006351359.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Na_K-ATPase PF00287.18 gi|389849125|ref|YP_006351361.1| - 0.074 12.2 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain ADH_zinc_N PF00107.26 gi|389849127|ref|YP_006351363.1| - 1.1e-22 80.4 0.1 1.6e-22 79.8 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389849127|ref|YP_006351363.1| - 1.5e-21 76.3 0.3 2.5e-21 75.6 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|389849127|ref|YP_006351363.1| - 2.6e-15 57.7 0.2 5.3e-15 56.6 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|389849127|ref|YP_006351363.1| - 0.11 12.6 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region eIF-1a PF01176.19 gi|389849128|ref|YP_006351364.1| - 1.2e-20 73.1 0.3 1.4e-20 72.9 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ADH_N PF08240.12 gi|389849129|ref|YP_006351365.1| - 5.5e-31 106.7 0.1 1e-30 105.8 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|389849129|ref|YP_006351365.1| - 1.8e-26 92.7 0.7 2.9e-26 92.0 0.7 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|389849129|ref|YP_006351365.1| - 2.9e-10 40.0 1.3 4.8e-10 39.3 1.3 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|389849129|ref|YP_006351365.1| - 1.4e-06 29.4 0.2 2.5e-06 28.6 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.16 gi|389849129|ref|YP_006351365.1| - 0.004 17.8 1.7 0.0069 17.0 1.7 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|389849129|ref|YP_006351365.1| - 0.042 14.5 0.4 0.097 13.4 0.4 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|389849129|ref|YP_006351365.1| - 0.05 13.9 0.9 0.082 13.2 0.9 1.4 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|389849129|ref|YP_006351365.1| - 0.055 12.8 0.1 0.099 12.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_24 PF13578.6 gi|389849129|ref|YP_006351365.1| - 0.083 13.9 0.3 0.17 13.0 0.3 1.5 1 0 0 1 1 1 0 Methyltransferase domain ADH_N_2 PF16884.5 gi|389849129|ref|YP_006351365.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase tRNA_edit PF04073.15 gi|389849130|ref|YP_006351366.1| - 1.4e-28 99.5 0.1 1.6e-28 99.2 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Pilin_N PF07790.11 gi|389849131|ref|YP_006351367.1| - 7.4e-25 87.7 2.5 7.4e-25 87.7 2.5 1.6 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Abhydrolase_8 PF06259.12 gi|389849131|ref|YP_006351367.1| - 0.0025 17.5 0.6 0.0034 17.0 0.6 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase Cadherin-like PF12733.7 gi|389849131|ref|YP_006351367.1| - 0.43 11.1 4.7 1.1 9.8 4.3 1.7 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain T2SSF PF00482.23 gi|389849138|ref|YP_006351374.1| - 2.2e-26 92.3 7.5 4.7e-14 52.4 2.4 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF5344 PF17279.2 gi|389849138|ref|YP_006351374.1| - 0.12 13.0 0.1 0.75 10.4 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5344) Ribosomal_60s PF00428.19 gi|389849139|ref|YP_006351375.1| - 1.2e-08 35.5 11.0 2.1e-08 34.6 11.0 1.4 1 0 0 1 1 1 1 60s Acidic ribosomal protein T2SSE PF00437.20 gi|389849140|ref|YP_006351376.1| - 2.6e-45 154.6 0.0 4.6e-45 153.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|389849140|ref|YP_006351376.1| - 0.0023 17.6 0.1 0.0048 16.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase PF06745.13 gi|389849141|ref|YP_006351377.1| - 1.1e-07 31.4 0.0 0.0044 16.4 0.0 2.2 1 1 1 2 2 2 2 KaiC Rad51 PF08423.11 gi|389849141|ref|YP_006351377.1| - 0.12 11.7 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad51 Pilin_N PF07790.11 gi|389849142|ref|YP_006351378.1| - 2.6e-18 66.7 1.6 4.9e-18 65.8 1.6 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Bactofilin PF04519.13 gi|389849143|ref|YP_006351379.1| - 0.026 14.8 4.7 0.027 14.8 0.3 2.9 3 0 0 3 3 3 0 Polymer-forming cytoskeletal Glyoxalase PF00903.25 gi|389849145|ref|YP_006351381.1| - 1.5e-15 57.6 0.1 2.2e-15 57.0 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389849145|ref|YP_006351381.1| - 5.1e-14 52.5 0.0 8e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|389849145|ref|YP_006351381.1| - 1.5e-08 34.6 0.0 2.4e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|389849145|ref|YP_006351381.1| - 1.9e-05 25.4 0.2 6.7e-05 23.6 0.2 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|389849145|ref|YP_006351381.1| - 0.00058 20.0 0.0 0.0011 19.1 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain DUF3890 PF13029.6 gi|389849145|ref|YP_006351381.1| - 0.11 12.9 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3890) Chalcone PF02431.15 gi|389849145|ref|YP_006351381.1| - 0.16 11.3 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Chalcone-flavanone isomerase PAS PF00989.25 gi|389849146|ref|YP_006351382.1| - 1.8e-34 118.1 0.0 3.6e-18 65.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|389849146|ref|YP_006351382.1| - 1.8e-32 111.7 0.0 1.1e-15 57.7 0.0 2.7 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|389849146|ref|YP_006351382.1| - 1.8e-27 95.7 0.1 4.9e-16 58.9 0.3 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|389849146|ref|YP_006351382.1| - 1.6e-19 70.0 0.0 2.6e-08 34.0 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|389849146|ref|YP_006351382.1| - 6.2e-17 61.2 0.0 7e-09 35.5 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|389849146|ref|YP_006351382.1| - 2.1e-12 47.6 0.0 4.4e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389849146|ref|YP_006351382.1| - 2.8e-09 37.0 0.1 6.3e-09 35.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|389849146|ref|YP_006351382.1| - 2.6e-05 24.7 0.0 0.0076 16.8 0.0 2.5 2 0 0 2 2 2 1 PAS domain HisKA_4TM PF16926.5 gi|389849146|ref|YP_006351382.1| - 0.00011 21.9 0.1 0.00024 20.7 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|389849146|ref|YP_006351382.1| - 0.0043 16.9 0.0 0.0096 15.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|389849146|ref|YP_006351382.1| - 0.014 15.1 0.1 0.042 13.6 0.1 1.8 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain SpoVT_C PF15714.5 gi|389849146|ref|YP_006351382.1| - 0.056 13.5 0.3 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor PAS_12 PF18095.1 gi|389849146|ref|YP_006351382.1| - 0.095 12.3 0.0 0.3 10.7 0.0 1.8 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HisKA PF00512.25 gi|389849146|ref|YP_006351382.1| - 0.14 12.2 2.5 0.23 11.5 0.8 2.4 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Iron_transport PF10634.9 gi|389849147|ref|YP_006351383.1| - 0.00017 21.8 0.0 0.0081 16.3 0.0 2.5 2 0 0 2 2 2 2 Fe2+ transport protein zf-C2H2 PF00096.26 gi|389849148|ref|YP_006351384.1| - 0.04 14.4 0.1 0.062 13.8 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_12 PF18658.1 gi|389849148|ref|YP_006351384.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Zinc-finger C2H2-type PTR2 PF00854.21 gi|389849149|ref|YP_006351385.1| - 0.0022 16.9 0.5 1.4 7.7 0.2 2.2 2 0 0 2 2 2 2 POT family E1-E2_ATPase PF00122.20 gi|389849150|ref|YP_006351386.1| - 2.6e-54 183.5 0.7 2.6e-54 183.5 0.7 2.6 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|389849150|ref|YP_006351386.1| - 1e-41 143.6 1.3 1e-41 143.6 1.3 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|389849150|ref|YP_006351386.1| - 5.2e-29 100.5 1.5 3e-13 50.0 0.0 3.7 4 0 0 4 4 4 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|389849150|ref|YP_006351386.1| - 0.0012 18.7 0.5 0.018 14.8 0.7 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389849150|ref|YP_006351386.1| - 0.0012 19.3 0.1 0.0037 17.7 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Anti-TRAP PF15777.5 gi|389849150|ref|YP_006351386.1| - 0.14 12.1 0.6 24 5.0 0.0 2.6 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-LITAF-like PF10601.9 gi|389849150|ref|YP_006351386.1| - 0.29 11.4 2.8 29 5.0 0.0 3.3 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain HIPIP PF01355.17 gi|389849151|ref|YP_006351387.1| - 7.4e-09 35.8 0.1 1.1e-08 35.2 0.1 1.3 1 0 0 1 1 1 1 High potential iron-sulfur protein HPIP_like PF18524.1 gi|389849151|ref|YP_006351387.1| - 0.13 12.0 1.1 0.23 11.3 1.1 1.4 1 0 0 1 1 1 0 High potential iron-sulfur protein like eIF-1a PF01176.19 gi|389849152|ref|YP_006351388.1| - 0.21 11.4 1.1 2.1 8.2 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor 1A / IF-1 Pyr_redox_2 PF07992.14 gi|389849154|ref|YP_006351390.1| - 2e-49 168.4 0.2 2e-49 168.4 0.2 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389849154|ref|YP_006351390.1| - 2.9e-24 85.4 1.1 3.3e-18 66.0 0.1 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389849154|ref|YP_006351390.1| - 7.5e-12 45.5 0.0 5.2e-11 42.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|389849154|ref|YP_006351390.1| - 1e-07 31.6 0.0 0.0061 15.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389849154|ref|YP_006351390.1| - 1.6e-07 31.5 0.9 0.014 15.6 0.2 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389849154|ref|YP_006351390.1| - 8.2e-05 22.3 2.6 1.2 8.6 0.0 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|389849154|ref|YP_006351390.1| - 0.00031 19.6 0.1 0.75 8.4 0.0 3.4 3 1 1 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.18 gi|389849154|ref|YP_006351390.1| - 0.0028 17.6 0.1 0.0049 16.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389849154|ref|YP_006351390.1| - 0.0091 16.4 0.4 1.1 9.7 0.1 2.8 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|389849154|ref|YP_006351390.1| - 0.021 13.9 0.5 3.3 6.7 0.1 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|389849154|ref|YP_006351390.1| - 0.029 14.3 0.2 0.42 10.6 0.1 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|389849154|ref|YP_006351390.1| - 0.038 13.2 0.1 1.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|389849154|ref|YP_006351390.1| - 0.11 11.8 0.7 0.58 9.4 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|389849154|ref|YP_006351390.1| - 0.21 10.8 4.4 5 6.3 0.1 2.9 2 1 1 3 3 3 0 FAD binding domain EamA PF00892.20 gi|389849155|ref|YP_006351391.1| - 5.1e-39 133.6 33.1 6.8e-20 71.6 10.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family ZnuA PF01297.17 gi|389849157|ref|YP_006351393.1| - 3.8e-54 183.8 1.6 5.6e-54 183.2 1.6 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Macoilin PF09726.9 gi|389849157|ref|YP_006351393.1| - 0.62 8.5 5.6 0.76 8.3 5.6 1.1 1 0 0 1 1 1 0 Macoilin family SpoIIIAH PF12685.7 gi|389849157|ref|YP_006351393.1| - 1.1 9.1 6.6 1.9 8.2 6.6 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein Presenilin PF01080.17 gi|389849157|ref|YP_006351393.1| - 1.2 7.8 6.8 1.5 7.5 6.8 1.1 1 0 0 1 1 1 0 Presenilin Mpp10 PF04006.12 gi|389849157|ref|YP_006351393.1| - 1.3 7.4 17.6 1.7 7.0 17.6 1.1 1 0 0 1 1 1 0 Mpp10 protein CDC45 PF02724.14 gi|389849157|ref|YP_006351393.1| - 1.3 7.2 11.8 1.7 6.9 11.8 1.1 1 0 0 1 1 1 0 CDC45-like protein LAP1C PF05609.12 gi|389849157|ref|YP_006351393.1| - 2.3 7.2 13.8 3.2 6.7 13.8 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) SAPS PF04499.15 gi|389849157|ref|YP_006351393.1| - 3 6.5 10.0 3.9 6.2 10.0 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein SLC12 PF03522.15 gi|389849157|ref|YP_006351393.1| - 3 6.8 4.2 4 6.4 4.2 1.1 1 0 0 1 1 1 0 Solute carrier family 12 ABC_tran PF00005.27 gi|389849158|ref|YP_006351394.1| - 8.6e-31 107.3 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849158|ref|YP_006351394.1| - 4.2e-10 39.9 0.0 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849158|ref|YP_006351394.1| - 4.4e-06 26.3 0.3 7.1e-05 22.3 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389849158|ref|YP_006351394.1| - 0.00064 19.4 0.1 0.0012 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389849158|ref|YP_006351394.1| - 0.0021 18.5 0.8 0.0069 16.8 0.8 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|389849158|ref|YP_006351394.1| - 0.0025 17.6 0.0 0.047 13.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|389849158|ref|YP_006351394.1| - 0.0054 16.9 1.3 0.22 11.8 1.0 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|389849158|ref|YP_006351394.1| - 0.016 15.7 0.0 0.026 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|389849158|ref|YP_006351394.1| - 0.023 14.9 0.1 0.32 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|389849158|ref|YP_006351394.1| - 0.046 13.6 0.0 0.092 12.7 0.0 1.5 1 1 0 1 1 1 0 NTPase AAA_33 PF13671.6 gi|389849158|ref|YP_006351394.1| - 0.058 13.6 0.1 0.36 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|389849158|ref|YP_006351394.1| - 0.058 13.1 0.4 0.27 10.9 0.4 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|389849158|ref|YP_006351394.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|389849158|ref|YP_006351394.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Methyltransf_21 PF05050.12 gi|389849158|ref|YP_006351394.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase FkbM domain IstB_IS21 PF01695.17 gi|389849158|ref|YP_006351394.1| - 0.15 11.8 0.1 17 5.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein CLP1_P PF16575.5 gi|389849158|ref|YP_006351394.1| - 0.21 11.3 0.0 7 6.4 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC-3 PF00950.17 gi|389849160|ref|YP_006351396.1| - 2.5e-56 191.0 35.1 3.3e-56 190.7 35.1 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|389849160|ref|YP_006351396.1| - 0.0016 17.5 36.2 0.0016 17.5 36.2 1.6 1 1 0 1 1 1 1 FecCD transport family DUF1180 PF06679.12 gi|389849160|ref|YP_006351396.1| - 2.6 8.4 4.7 0.91 9.9 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) MCPsignal PF00015.21 gi|389849162|ref|YP_006351398.1| - 4e-45 153.7 49.5 1.2e-43 148.9 28.0 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|389849162|ref|YP_006351398.1| - 4e-06 27.0 31.7 0.01 16.1 2.6 5.0 2 2 1 4 4 4 4 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.6 gi|389849162|ref|YP_006351398.1| - 0.00025 21.4 7.7 0.73 10.2 0.7 4.4 2 1 2 4 4 3 2 Syntaxin-like protein Fib_alpha PF08702.10 gi|389849162|ref|YP_006351398.1| - 0.0049 17.0 2.3 0.0049 17.0 2.3 3.4 2 2 1 3 3 3 1 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|389849162|ref|YP_006351398.1| - 0.011 15.7 27.5 1 9.4 2.5 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|389849162|ref|YP_006351398.1| - 0.014 15.4 36.0 0.085 12.9 4.1 4.4 2 2 2 4 4 4 0 Laminin Domain II Sec5 PF15469.6 gi|389849162|ref|YP_006351398.1| - 0.019 14.8 7.8 0.08 12.7 5.7 2.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 Fzo_mitofusin PF04799.13 gi|389849162|ref|YP_006351398.1| - 0.055 13.0 12.4 0.87 9.1 0.2 3.8 3 2 1 4 4 4 0 fzo-like conserved region Mod_r PF07200.13 gi|389849162|ref|YP_006351398.1| - 0.2 11.8 12.1 2.3 8.3 2.9 2.8 2 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein CENP-S PF15630.6 gi|389849162|ref|YP_006351398.1| - 0.23 11.9 0.3 0.23 11.9 0.3 2.9 3 0 0 3 3 3 0 CENP-S protein BLOC1_2 PF10046.9 gi|389849162|ref|YP_006351398.1| - 0.32 11.3 20.4 1.4 9.3 1.0 4.8 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ApoLp-III PF07464.11 gi|389849162|ref|YP_006351398.1| - 0.38 10.8 28.3 0.038 14.1 12.3 3.2 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) COG2 PF06148.11 gi|389849162|ref|YP_006351398.1| - 0.55 10.3 22.9 1.5 8.9 1.2 4.2 1 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DegS PF05384.11 gi|389849162|ref|YP_006351398.1| - 0.75 9.3 17.9 0.69 9.4 0.4 3.9 4 0 0 4 4 4 0 Sensor protein DegS TMPIT PF07851.13 gi|389849162|ref|YP_006351398.1| - 1.3 8.2 10.2 3.2 6.9 1.2 3.0 2 1 1 3 3 3 0 TMPIT-like protein Spc7 PF08317.11 gi|389849162|ref|YP_006351398.1| - 1.7 7.5 23.2 2.5 6.9 8.7 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein YkyA PF10368.9 gi|389849162|ref|YP_006351398.1| - 2.2 7.9 27.7 0.1 12.2 7.2 3.3 2 1 0 3 3 3 0 Putative cell-wall binding lipoprotein Syntaxin-6_N PF09177.11 gi|389849162|ref|YP_006351398.1| - 2.3 8.8 20.8 5.5 7.6 1.4 4.0 2 2 1 3 3 3 0 Syntaxin 6, N-terminal DUF4618 PF15397.6 gi|389849162|ref|YP_006351398.1| - 2.4 7.5 10.4 1.7 8.0 0.2 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4618) Prominin PF05478.11 gi|389849162|ref|YP_006351398.1| - 2.8 5.8 11.7 2.6 5.9 3.2 2.1 1 1 1 2 2 2 0 Prominin FH2 PF02181.23 gi|389849162|ref|YP_006351398.1| - 3.2 6.8 11.7 0.75 8.8 1.2 2.9 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF2203 PF09969.9 gi|389849162|ref|YP_006351398.1| - 3.4 8.4 20.2 4.1 8.2 2.5 3.6 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF2730 PF10805.8 gi|389849162|ref|YP_006351398.1| - 3.8 7.7 8.0 5.4 7.2 0.1 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2730) Dor1 PF04124.12 gi|389849162|ref|YP_006351398.1| - 3.9 6.1 10.6 1.7 7.3 6.7 2.1 1 1 1 2 2 2 0 Dor1-like family HMMR_N PF15905.5 gi|389849162|ref|YP_006351398.1| - 3.9 6.9 13.6 1.6 8.1 3.0 2.4 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal CorA PF01544.18 gi|389849162|ref|YP_006351398.1| - 5.7 6.2 12.5 1.2 8.4 3.9 2.4 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Adaptin_binding PF10199.9 gi|389849162|ref|YP_006351398.1| - 8.7 7.0 11.3 3.2 8.4 2.6 2.4 2 1 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 LOH1CR12 PF10158.9 gi|389849162|ref|YP_006351398.1| - 9.9 6.2 12.0 2 8.5 1.6 3.3 2 2 0 3 3 3 0 Tumour suppressor protein CheW PF01584.19 gi|389849163|ref|YP_006351399.1| - 4.7e-23 81.4 0.1 5.6e-23 81.1 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain MFS_1 PF07690.16 gi|389849166|ref|YP_006351402.1| - 1.6e-19 70.1 47.7 1.6e-11 43.8 27.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389849166|ref|YP_006351402.1| - 4.5e-05 22.5 9.2 7.1e-05 21.8 9.2 1.3 1 0 0 1 1 1 1 MFS_1 like family DUF3149 PF11346.8 gi|389849166|ref|YP_006351402.1| - 0.12 12.0 1.5 2.9 7.6 0.0 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) F420_oxidored PF03807.17 gi|389849168|ref|YP_006351404.1| - 1.8e-17 63.7 0.0 3.4e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.9 gi|389849168|ref|YP_006351404.1| - 1.6e-05 24.8 0.2 0.00016 21.6 0.0 2.1 1 1 0 2 2 2 1 Rossmann-like domain NAD_binding_2 PF03446.15 gi|389849168|ref|YP_006351404.1| - 0.0028 17.8 0.1 0.012 15.7 0.0 1.9 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|389849168|ref|YP_006351404.1| - 0.0029 17.5 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|389849168|ref|YP_006351404.1| - 0.038 13.3 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|389849168|ref|YP_006351404.1| - 0.092 12.3 0.0 0.61 9.6 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|389849168|ref|YP_006351404.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|389849168|ref|YP_006351404.1| - 0.19 11.7 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HalOD1 PF18545.1 gi|389849169|ref|YP_006351405.1| - 5e-21 74.8 0.0 6.3e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PGM_PMM_I PF02878.16 gi|389849171|ref|YP_006351407.1| - 1.9e-29 102.1 0.0 3.4e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|389849171|ref|YP_006351407.1| - 8.5e-19 67.8 0.0 1.6e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|389849171|ref|YP_006351407.1| - 6.1e-17 62.1 0.4 1.3e-16 61.1 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|389849171|ref|YP_006351407.1| - 1.7e-14 53.8 0.2 4.1e-14 52.5 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NosL PF05573.12 gi|389849172|ref|YP_006351408.1| - 1.6e-41 141.7 0.1 2e-41 141.4 0.1 1.1 1 0 0 1 1 1 1 NosL PadR PF03551.14 gi|389849174|ref|YP_006351410.1| - 1.6e-10 40.8 0.1 1.9e-10 40.6 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|389849174|ref|YP_006351410.1| - 0.0057 17.1 0.0 0.0082 16.6 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|389849174|ref|YP_006351410.1| - 0.0068 16.2 0.0 0.0086 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.6 gi|389849174|ref|YP_006351410.1| - 0.016 15.3 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|389849174|ref|YP_006351410.1| - 0.036 13.8 0.0 0.043 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.19 gi|389849174|ref|YP_006351410.1| - 0.04 14.1 0.0 0.044 13.9 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_20 PF12840.7 gi|389849175|ref|YP_006351411.1| - 0.0013 18.7 1.2 0.031 14.4 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain GST_N_5 PF18485.1 gi|389849175|ref|YP_006351411.1| - 0.026 14.9 0.0 0.06 13.7 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain HTH_5 PF01022.20 gi|389849175|ref|YP_006351411.1| - 0.032 14.1 0.0 0.65 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FA_desaturase PF00487.24 gi|389849175|ref|YP_006351411.1| - 0.044 13.6 6.4 0.062 13.1 6.4 1.2 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.9 gi|389849175|ref|YP_006351411.1| - 0.057 12.2 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF58 PF01882.18 gi|389849175|ref|YP_006351411.1| - 0.075 13.3 0.2 0.13 12.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF58 HTH_11 PF08279.12 gi|389849175|ref|YP_006351411.1| - 0.081 12.9 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain MMR_HSR1_C PF08438.10 gi|389849176|ref|YP_006351412.1| - 0.22 12.1 1.1 1.2 9.8 0.1 2.1 2 0 0 2 2 2 0 GTPase of unknown function C-terminal NTP_transferase PF00483.23 gi|389849177|ref|YP_006351413.1| - 6.5e-28 98.0 0.0 8.3e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389849177|ref|YP_006351413.1| - 2.3e-17 63.8 0.1 3.9e-17 63.1 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389849177|ref|YP_006351413.1| - 3.2e-17 61.5 19.3 2.3e-05 23.9 0.4 4.9 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|389849177|ref|YP_006351413.1| - 3.1e-07 30.0 19.0 0.00016 21.3 5.2 6.3 4 2 2 6 6 6 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|389849177|ref|YP_006351413.1| - 0.00012 21.9 0.1 0.00019 21.2 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|389849177|ref|YP_006351413.1| - 0.0053 15.7 0.1 0.038 12.9 0.1 2.2 2 0 0 2 2 2 1 L-fucokinase DUF4954 PF16314.5 gi|389849177|ref|YP_006351413.1| - 0.026 12.7 0.3 0.039 12.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) SIS PF01380.22 gi|389849178|ref|YP_006351414.1| - 2.6e-50 169.6 0.6 3.9e-24 85.0 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|389849178|ref|YP_006351414.1| - 8.7e-22 77.8 0.1 2.4e-21 76.3 0.1 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|389849178|ref|YP_006351414.1| - 4.1e-19 68.7 0.0 9.3e-19 67.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|389849178|ref|YP_006351414.1| - 5.7e-05 22.1 0.0 9.1e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|389849178|ref|YP_006351414.1| - 0.00018 21.6 0.2 0.032 14.3 0.1 2.6 2 0 0 2 2 2 2 SIS domain Hydrolase PF00702.26 gi|389849178|ref|YP_006351414.1| - 0.028 14.7 0.3 0.26 11.6 0.0 2.4 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase HTH_20 PF12840.7 gi|389849179|ref|YP_006351415.1| - 4.9e-10 39.3 0.3 1.1e-09 38.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389849179|ref|YP_006351415.1| - 4.5e-09 36.1 0.0 7.1e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389849179|ref|YP_006351415.1| - 6.3e-07 29.2 0.0 1.7e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389849179|ref|YP_006351415.1| - 6.9e-07 29.1 0.0 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|389849179|ref|YP_006351415.1| - 1.2e-06 28.2 0.0 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|389849179|ref|YP_006351415.1| - 5.6e-05 22.8 0.0 5.6e-05 22.8 0.0 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|389849179|ref|YP_006351415.1| - 9.2e-05 22.2 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389849179|ref|YP_006351415.1| - 0.00024 21.0 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|389849179|ref|YP_006351415.1| - 0.00029 20.3 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|389849179|ref|YP_006351415.1| - 0.00034 20.4 0.1 0.00072 19.3 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|389849179|ref|YP_006351415.1| - 0.00089 19.2 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|389849179|ref|YP_006351415.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family FUR PF01475.19 gi|389849179|ref|YP_006351415.1| - 0.0017 18.5 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family Sigma70_r4 PF04545.16 gi|389849179|ref|YP_006351415.1| - 0.0041 16.6 0.0 0.052 13.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|389849179|ref|YP_006351415.1| - 0.0071 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|389849179|ref|YP_006351415.1| - 0.0088 16.4 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|389849179|ref|YP_006351415.1| - 0.0092 15.6 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HxlR PF01638.17 gi|389849179|ref|YP_006351415.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|389849179|ref|YP_006351415.1| - 0.013 16.0 0.1 0.031 14.8 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|389849179|ref|YP_006351415.1| - 0.017 15.1 0.3 0.05 13.6 0.0 1.8 2 1 0 2 2 2 0 Dimerisation domain HTH_29 PF13551.6 gi|389849179|ref|YP_006351415.1| - 0.027 14.5 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix B-block_TFIIIC PF04182.12 gi|389849179|ref|YP_006351415.1| - 0.034 14.3 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_23 PF13384.6 gi|389849179|ref|YP_006351415.1| - 0.039 13.8 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Sulfolobus_pRN PF05584.11 gi|389849179|ref|YP_006351415.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein ArsR PF09824.9 gi|389849179|ref|YP_006351415.1| - 0.071 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator TetR_N PF00440.23 gi|389849179|ref|YP_006351415.1| - 0.074 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 gi|389849179|ref|YP_006351415.1| - 0.083 13.2 0.5 0.28 11.6 0.0 2.2 3 0 0 3 3 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|389849179|ref|YP_006351415.1| - 0.091 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF4423 PF14394.6 gi|389849179|ref|YP_006351415.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Replic_Relax PF13814.6 gi|389849179|ref|YP_006351415.1| - 0.16 12.1 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_Tnp_ISL3 PF13542.6 gi|389849179|ref|YP_006351415.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|389849179|ref|YP_006351415.1| - 0.18 11.6 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HxlR PF01638.17 gi|389849183|ref|YP_006351419.1| - 7e-22 77.1 0.0 8.4e-22 76.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|389849183|ref|YP_006351419.1| - 1.3e-05 25.3 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|389849183|ref|YP_006351419.1| - 8.8e-05 22.9 0.1 0.00016 22.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|389849183|ref|YP_006351419.1| - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389849183|ref|YP_006351419.1| - 0.0017 18.2 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|389849183|ref|YP_006351419.1| - 0.0027 17.6 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|389849183|ref|YP_006351419.1| - 0.0042 17.0 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389849183|ref|YP_006351419.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|389849183|ref|YP_006351419.1| - 0.039 14.0 0.0 0.051 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|389849183|ref|YP_006351419.1| - 0.073 13.1 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Connexin50 PF03509.14 gi|389849183|ref|YP_006351419.1| - 0.087 13.6 0.0 0.17 12.7 0.0 1.5 1 0 0 1 1 1 0 Gap junction alpha-8 protein (Cx50) DUF4364 PF14277.6 gi|389849183|ref|YP_006351419.1| - 0.093 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TnsD PF15978.5 gi|389849183|ref|YP_006351419.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D Rrf2 PF02082.20 gi|389849183|ref|YP_006351419.1| - 0.16 12.4 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Rrf2 PF02082.20 gi|389849184|ref|YP_006351420.1| - 4.7e-25 87.8 0.0 1.8e-24 85.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|389849184|ref|YP_006351420.1| - 4.7e-07 29.4 0.0 7.1e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TFIIE_alpha PF02002.17 gi|389849184|ref|YP_006351420.1| - 0.02 14.8 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Put_DNA-bind_N PF06971.13 gi|389849184|ref|YP_006351420.1| - 0.026 14.5 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus NTP_transferase PF00483.23 gi|389849185|ref|YP_006351421.1| - 5.3e-42 144.1 0.0 8e-42 143.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|389849185|ref|YP_006351421.1| - 3.1e-16 60.1 0.2 5.4e-16 59.4 0.2 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|389849185|ref|YP_006351421.1| - 1.9e-10 40.1 11.4 0.00033 20.3 1.8 4.6 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|389849185|ref|YP_006351421.1| - 0.00025 20.9 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|389849185|ref|YP_006351421.1| - 0.06 13.1 7.9 5 7.0 0.0 4.1 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|389849185|ref|YP_006351421.1| - 0.11 12.8 5.1 0.2 12.0 4.0 2.0 1 1 1 2 2 2 0 Polymer-forming cytoskeletal IMPDH PF00478.25 gi|389849186|ref|YP_006351422.1| - 7.8e-115 383.6 3.5 9.6e-115 383.3 3.5 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|389849186|ref|YP_006351422.1| - 6.5e-11 42.2 7.4 8.1e-06 25.5 3.4 2.5 1 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|389849186|ref|YP_006351422.1| - 6.3e-09 35.3 4.8 1.1e-08 34.5 4.8 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|389849186|ref|YP_006351422.1| - 2.4e-07 30.5 0.5 0.00031 20.3 0.0 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|389849186|ref|YP_006351422.1| - 0.00013 21.2 0.6 0.00032 19.9 0.4 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|389849186|ref|YP_006351422.1| - 0.0053 16.0 0.2 0.012 14.8 0.2 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase QRPTase_C PF01729.19 gi|389849186|ref|YP_006351422.1| - 0.011 15.5 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|389849186|ref|YP_006351422.1| - 0.015 14.5 3.8 0.26 10.5 2.4 3.1 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|389849186|ref|YP_006351422.1| - 0.021 14.2 0.8 0.13 11.6 0.5 2.0 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family ChaC PF04752.12 gi|389849186|ref|YP_006351422.1| - 0.031 14.4 0.2 11 6.0 0.0 2.3 2 0 0 2 2 2 0 ChaC-like protein DUF1381 PF07129.11 gi|389849186|ref|YP_006351422.1| - 0.036 13.9 0.1 0.098 12.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1381) ThiG PF05690.14 gi|389849186|ref|YP_006351422.1| - 0.037 13.3 0.6 0.072 12.4 0.2 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG EAL PF00563.20 gi|389849186|ref|YP_006351422.1| - 0.065 12.7 0.1 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 EAL domain PcrB PF01884.17 gi|389849186|ref|YP_006351422.1| - 0.13 11.7 0.8 0.31 10.5 0.1 1.9 2 0 0 2 2 2 0 PcrB family Cas_Cas6 PF01881.16 gi|389849187|ref|YP_006351423.1| - 1.7e-15 57.8 0.0 2.3e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.10 gi|389849188|ref|YP_006351424.1| - 2.9e-18 66.0 0.0 1.5e-09 37.2 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) AAA_17 PF13207.6 gi|389849188|ref|YP_006351424.1| - 0.19 12.1 0.1 0.59 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Cas_Cas7 PF05107.12 gi|389849189|ref|YP_006351425.1| - 1.5e-48 165.5 0.0 1.8e-48 165.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas5d PF09704.10 gi|389849190|ref|YP_006351426.1| - 2.3e-10 40.7 0.0 2.9e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) PAP_PilO PF06864.12 gi|389849190|ref|YP_006351426.1| - 0.2 10.5 0.0 0.29 9.9 0.0 1.2 1 0 0 1 1 1 0 Pilin accessory protein (PilO) HD_6 PF18019.1 gi|389849191|ref|YP_006351427.1| - 2.1e-06 28.0 0.1 4.6e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 gi|389849191|ref|YP_006351427.1| - 4.3e-06 26.9 0.0 8.2e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|389849191|ref|YP_006351427.1| - 0.00011 22.1 0.0 0.00025 20.9 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|389849191|ref|YP_006351427.1| - 0.02 15.3 0.3 0.11 12.9 0.1 2.3 2 1 0 2 2 2 0 Helicase conserved C-terminal domain PhoH PF02562.16 gi|389849191|ref|YP_006351427.1| - 0.03 13.8 0.0 0.084 12.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein HD PF01966.22 gi|389849191|ref|YP_006351427.1| - 0.048 13.9 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 HD domain Cas_Cas4 PF01930.17 gi|389849192|ref|YP_006351428.1| - 6.6e-49 166.1 0.0 7.6e-49 165.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|389849192|ref|YP_006351428.1| - 1.6e-05 24.9 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 gi|389849193|ref|YP_006351429.1| - 7.5e-88 294.3 0.0 8.7e-88 294.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|389849194|ref|YP_006351430.1| - 4.6e-16 58.8 0.1 5.2e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF2520 PF10728.9 gi|389849194|ref|YP_006351430.1| - 0.025 14.3 0.0 0.028 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) SHS2_FTSA PF02491.20 gi|389849194|ref|YP_006351430.1| - 0.062 13.7 0.1 0.075 13.4 0.1 1.1 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA DUF4242 PF14026.6 gi|389849195|ref|YP_006351431.1| - 8.6e-23 80.3 0.2 9.4e-23 80.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4242) Peptidase_S74 PF13884.6 gi|389849195|ref|YP_006351431.1| - 0.042 14.2 0.0 0.064 13.6 0.0 1.4 1 1 0 1 1 1 0 Chaperone of endosialidase AP_endonuc_2 PF01261.24 gi|389849196|ref|YP_006351432.1| - 0.071 12.5 0.0 0.086 12.3 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MFS_1 PF07690.16 gi|389849197|ref|YP_006351433.1| - 2.2e-43 148.5 53.3 5.6e-34 117.6 33.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|389849197|ref|YP_006351433.1| - 0.036 12.4 0.6 0.18 10.0 0.3 1.9 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DZR PF12773.7 gi|389849198|ref|YP_006351434.1| - 0.021 14.9 0.2 0.027 14.5 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|389849198|ref|YP_006351434.1| - 0.022 14.1 0.5 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|389849198|ref|YP_006351434.1| - 0.027 14.5 1.0 0.03 14.4 0.0 1.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|389849198|ref|YP_006351434.1| - 0.069 12.5 1.0 0.13 11.7 0.1 1.8 2 0 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|389849198|ref|YP_006351434.1| - 0.13 11.9 1.2 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|389849198|ref|YP_006351434.1| - 0.22 11.5 1.4 0.34 11.0 1.4 1.3 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|389849198|ref|YP_006351434.1| - 0.31 11.0 2.6 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|389849198|ref|YP_006351434.1| - 0.38 10.9 3.1 6.9 6.8 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HMA PF00403.26 gi|389849198|ref|YP_006351434.1| - 0.42 11.1 2.1 12 6.5 0.1 2.4 2 1 0 2 2 2 0 Heavy-metal-associated domain zf-C2H2_3 PF13878.6 gi|389849198|ref|YP_006351434.1| - 2.1 8.3 4.0 3.1 7.7 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.6 gi|389849199|ref|YP_006351435.1| - 0.0024 17.2 1.8 0.42 10.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|389849199|ref|YP_006351435.1| - 0.0068 16.1 1.0 2.9 7.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|389849199|ref|YP_006351435.1| - 0.028 14.4 0.2 0.045 13.8 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|389849199|ref|YP_006351435.1| - 0.079 12.9 0.6 6.7 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.12 gi|389849199|ref|YP_006351435.1| - 0.1 11.1 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.6 gi|389849199|ref|YP_006351435.1| - 0.17 12.3 1.9 5.2 7.5 1.9 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.9 gi|389849199|ref|YP_006351435.1| - 0.22 11.7 5.0 0.29 11.3 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.6 gi|389849199|ref|YP_006351435.1| - 0.36 10.6 2.2 13 5.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|389849199|ref|YP_006351435.1| - 0.41 10.8 2.4 6 7.0 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain GDPD PF03009.17 gi|389849200|ref|YP_006351436.1| - 3.8e-31 108.8 0.1 1.1e-30 107.3 0.1 1.7 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Urocanase_C PF17392.2 gi|389849201|ref|YP_006351437.1| - 2.3e-86 288.3 0.2 3.6e-86 287.6 0.2 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|389849201|ref|YP_006351437.1| - 4.8e-82 274.7 0.0 6.6e-82 274.2 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|389849201|ref|YP_006351437.1| - 7.2e-57 190.6 0.0 1.8e-56 189.3 0.0 1.7 1 0 0 1 1 1 1 Urocanase N-terminal domain GrpE PF01025.19 gi|389849201|ref|YP_006351437.1| - 0.036 13.7 0.4 0.16 11.6 0.1 1.9 1 1 1 2 2 2 0 GrpE BtrH_N PF14399.6 gi|389849201|ref|YP_006351437.1| - 0.042 14.1 0.0 0.097 12.9 0.0 1.5 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal Arginase PF00491.21 gi|389849202|ref|YP_006351438.1| - 1.3e-62 211.9 0.7 1.5e-62 211.7 0.7 1.0 1 0 0 1 1 1 1 Arginase family Amidohydro_1 PF01979.20 gi|389849203|ref|YP_006351439.1| - 1e-19 71.1 0.3 1.1e-18 67.7 0.3 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|389849203|ref|YP_006351439.1| - 2.4e-19 70.1 13.8 6e-12 45.8 6.7 2.5 1 1 1 2 2 2 2 Amidohydrolase family Lyase_aromatic PF00221.19 gi|389849204|ref|YP_006351440.1| - 1.8e-192 640.2 4.0 2e-192 640.0 4.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase PQQ_2 PF13360.6 gi|389849205|ref|YP_006351441.1| - 3.1e-24 85.9 8.6 1.1e-16 61.2 1.9 2.5 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|389849205|ref|YP_006351441.1| - 3.7e-11 42.4 2.8 0.06 13.3 0.0 5.8 6 0 0 6 6 6 3 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389849205|ref|YP_006351441.1| - 6e-09 36.1 19.5 0.0019 18.6 0.1 5.6 8 0 0 8 8 8 3 PQQ-like domain HZS_alpha PF18582.1 gi|389849205|ref|YP_006351441.1| - 0.16 12.5 0.0 4.6 7.8 0.0 2.8 3 0 0 3 3 3 0 Hydrazine synthase alpha subunit middle domain DDE_Tnp_IS240 PF13610.6 gi|389849207|ref|YP_006351443.1| - 3.6e-31 108.3 0.0 5.1e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389849207|ref|YP_006351443.1| - 2e-08 33.9 0.4 4.5e-08 32.8 0.4 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|389849207|ref|YP_006351443.1| - 0.0033 16.9 0.1 0.0065 16.0 0.1 1.5 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.26 gi|389849207|ref|YP_006351443.1| - 0.011 15.9 0.3 0.087 13.0 0.1 2.2 1 1 1 2 2 2 0 Integrase core domain rve_2 PF13333.6 gi|389849207|ref|YP_006351443.1| - 0.04 14.1 0.0 0.089 13.0 0.0 1.6 1 0 0 1 1 1 0 Integrase core domain DDE_Tnp_1 PF01609.21 gi|389849207|ref|YP_006351443.1| - 0.092 12.4 2.1 1.6 8.3 0.8 2.1 2 0 0 2 2 2 0 Transposase DDE domain DUF5441 PF17513.2 gi|389849207|ref|YP_006351443.1| - 0.18 11.5 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5441) DDE_Tnp_1 PF01609.21 gi|389849210|ref|YP_006351446.1| - 0.0069 16.1 0.1 0.011 15.4 0.1 1.3 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|389849210|ref|YP_006351446.1| - 0.042 14.2 0.0 0.056 13.8 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|389849211|ref|YP_006351447.1| - 4.9e-31 108.0 0.1 6.4e-31 107.7 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|389849211|ref|YP_006351447.1| - 0.054 11.8 0.0 0.17 10.1 0.0 1.7 1 1 1 2 2 2 0 Transposase DDE domain group 1 Peripla_BP_2 PF01497.18 gi|389849212|ref|YP_006351448.1| - 3.1e-16 59.7 0.0 4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389849212|ref|YP_006351448.1| - 0.00017 21.3 1.8 0.00017 21.3 1.8 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence MFMR_assoc PF16596.5 gi|389849212|ref|YP_006351448.1| - 0.0093 16.4 1.9 0.015 15.7 1.9 1.3 1 0 0 1 1 1 1 Disordered region downstream of MFMR GATase_3 PF07685.14 gi|389849213|ref|YP_006351449.1| - 2.3e-40 138.3 0.0 3.4e-40 137.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|389849213|ref|YP_006351449.1| - 2e-10 40.9 0.0 3.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389849213|ref|YP_006351449.1| - 0.00032 20.7 0.0 0.00052 20.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|389849213|ref|YP_006351449.1| - 0.07 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I SNO PF01174.19 gi|389849213|ref|YP_006351449.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|389849213|ref|YP_006351449.1| - 0.23 11.2 0.8 19 4.9 0.2 2.3 1 1 1 2 2 2 0 Peptidase C26 AMP-binding PF00501.28 gi|389849214|ref|YP_006351450.1| - 1.9e-94 316.7 0.1 2.2e-94 316.5 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389849214|ref|YP_006351450.1| - 8.5e-18 65.1 0.4 1.9e-17 64.0 0.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DoxX PF07681.12 gi|389849215|ref|YP_006351451.1| - 1.7e-07 31.7 9.1 1.7e-07 31.7 9.1 1.9 2 1 0 2 2 2 1 DoxX DoxD PF04173.13 gi|389849215|ref|YP_006351451.1| - 0.00042 20.3 5.4 0.00074 19.5 5.4 1.4 1 1 0 1 1 1 1 TQO small subunit DoxD Pyr_redox_2 PF07992.14 gi|389849217|ref|YP_006351453.1| - 3.9e-62 210.2 0.9 5e-62 209.8 0.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|389849217|ref|YP_006351453.1| - 2.4e-22 79.3 0.7 1e-17 64.4 0.3 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389849217|ref|YP_006351453.1| - 4.5e-13 49.4 0.2 2e-12 47.4 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|389849217|ref|YP_006351453.1| - 1.1e-09 37.9 0.0 9.7e-07 28.3 0.0 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|389849217|ref|YP_006351453.1| - 3.3e-08 32.7 0.0 0.062 12.0 0.0 4.1 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|389849217|ref|YP_006351453.1| - 1e-07 32.1 0.1 0.0087 16.3 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389849217|ref|YP_006351453.1| - 1.8e-07 31.0 0.6 2.3 7.7 0.0 4.2 4 0 0 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389849217|ref|YP_006351453.1| - 2e-07 30.4 1.4 0.19 10.8 0.2 3.4 2 1 0 3 3 3 3 FAD binding domain Amino_oxidase PF01593.24 gi|389849217|ref|YP_006351453.1| - 6.4e-05 22.4 0.1 0.18 11.1 0.0 2.9 2 1 0 3 3 3 2 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|389849217|ref|YP_006351453.1| - 0.001 18.5 2.5 0.46 9.8 0.3 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|389849217|ref|YP_006351453.1| - 0.0035 16.5 0.0 0.0074 15.5 0.0 1.5 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|389849217|ref|YP_006351453.1| - 0.0078 15.3 0.3 1.5 7.8 0.0 2.6 2 1 1 3 3 3 1 Lycopene cyclase protein Thi4 PF01946.17 gi|389849217|ref|YP_006351453.1| - 0.0086 15.3 0.0 0.16 11.1 0.0 2.3 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|389849217|ref|YP_006351453.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|389849217|ref|YP_006351453.1| - 0.031 14.7 0.1 1.8 9.0 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|389849217|ref|YP_006351453.1| - 0.034 13.0 0.6 0.59 8.9 0.0 2.6 2 1 1 3 3 3 0 Tryptophan halogenase TrkA_N PF02254.18 gi|389849217|ref|YP_006351453.1| - 0.035 14.4 0.1 8.5 6.7 0.0 3.1 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|389849217|ref|YP_006351453.1| - 0.047 13.7 0.3 12 5.8 0.1 3.5 3 1 1 4 4 4 0 FAD-NAD(P)-binding PALP PF00291.25 gi|389849218|ref|YP_006351454.1| - 4.7e-46 157.5 1.3 5.5e-46 157.3 1.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CN_hydrolase PF00795.22 gi|389849219|ref|YP_006351455.1| - 1.9e-60 204.4 0.0 2.1e-60 204.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Cupin_2 PF07883.11 gi|389849221|ref|YP_006351457.1| - 1.7e-08 34.1 0.1 2.7e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|389849221|ref|YP_006351457.1| - 0.00011 21.8 0.1 0.00016 21.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) cNMP_binding PF00027.29 gi|389849221|ref|YP_006351457.1| - 0.011 15.7 0.1 0.022 14.8 0.0 1.6 1 1 0 1 1 1 0 Cyclic nucleotide-binding domain Cupin_1 PF00190.22 gi|389849221|ref|YP_006351457.1| - 0.02 14.5 0.0 0.041 13.5 0.0 1.4 1 1 0 1 1 1 0 Cupin HutD PF05962.11 gi|389849221|ref|YP_006351457.1| - 0.092 12.7 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 HutD Arg_decarbox_C PF17944.1 gi|389849222|ref|YP_006351458.1| - 0.008 16.7 0.4 0.02 15.4 0.3 1.6 1 1 1 2 2 2 1 Arginine decarboxylase C-terminal helical extension MmlI PF09448.10 gi|389849223|ref|YP_006351459.1| - 2.7e-17 63.2 0.2 7.8e-16 58.6 0.2 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|389849223|ref|YP_006351459.1| - 7.5e-16 59.1 0.4 1.5e-15 58.1 0.4 1.5 1 1 0 1 1 1 1 EthD domain IclR PF01614.18 gi|389849224|ref|YP_006351460.1| - 3e-29 101.4 0.0 5.1e-29 100.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389849224|ref|YP_006351460.1| - 1.9e-13 50.0 0.3 1.3e-11 44.1 0.3 3.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|389849224|ref|YP_006351460.1| - 2.2e-09 36.7 0.1 5.5e-09 35.4 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|389849224|ref|YP_006351460.1| - 5.1e-09 35.9 0.0 1.1e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|389849224|ref|YP_006351460.1| - 2.6e-08 33.8 0.1 5.4e-08 32.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389849224|ref|YP_006351460.1| - 1.3e-07 31.4 0.0 2.8e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389849224|ref|YP_006351460.1| - 2.9e-07 30.3 0.0 6.4e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389849224|ref|YP_006351460.1| - 8e-06 25.7 0.1 2.3e-05 24.3 0.0 1.8 2 0 0 2 2 1 1 HTH domain Fe_dep_repress PF01325.19 gi|389849224|ref|YP_006351460.1| - 6.4e-05 23.1 0.0 0.00014 22.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|389849224|ref|YP_006351460.1| - 0.00016 21.6 0.0 0.0005 20.0 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|389849224|ref|YP_006351460.1| - 0.00044 20.2 0.0 0.00095 19.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|389849224|ref|YP_006351460.1| - 0.00049 19.9 0.1 0.0015 18.3 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|389849224|ref|YP_006351460.1| - 0.0016 18.3 0.0 0.004 17.0 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|389849224|ref|YP_006351460.1| - 0.0049 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|389849224|ref|YP_006351460.1| - 0.0049 16.6 0.1 0.031 14.1 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|389849224|ref|YP_006351460.1| - 0.0066 16.2 0.0 0.022 14.5 0.0 1.9 2 0 0 2 2 1 1 LexA DNA binding domain BLACT_WH PF17778.1 gi|389849224|ref|YP_006351460.1| - 0.008 16.1 0.3 0.038 14.0 0.1 2.2 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain HTH_DeoR PF08220.12 gi|389849224|ref|YP_006351460.1| - 0.01 15.6 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|389849224|ref|YP_006351460.1| - 0.015 15.2 0.0 0.056 13.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 gi|389849224|ref|YP_006351460.1| - 0.015 14.9 0.4 0.049 13.3 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RP-C PF03428.13 gi|389849224|ref|YP_006351460.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HemN_C PF06969.16 gi|389849224|ref|YP_006351460.1| - 0.024 14.7 0.3 0.23 11.5 0.0 2.5 1 1 1 2 2 2 0 HemN C-terminal domain Crp PF00325.20 gi|389849224|ref|YP_006351460.1| - 0.04 13.6 0.3 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|389849224|ref|YP_006351460.1| - 0.047 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|389849224|ref|YP_006351460.1| - 0.073 13.1 0.0 0.23 11.5 0.0 1.8 2 0 0 2 2 1 0 Winged helix-turn-helix HTH_12 PF08461.10 gi|389849224|ref|YP_006351460.1| - 0.078 12.9 0.1 0.35 10.8 0.0 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain z-alpha PF02295.17 gi|389849224|ref|YP_006351460.1| - 0.088 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_1 PF00126.27 gi|389849224|ref|YP_006351460.1| - 0.1 12.5 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|389849224|ref|YP_006351460.1| - 0.13 12.1 0.0 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain DUF2520 PF10728.9 gi|389849224|ref|YP_006351460.1| - 0.16 11.7 0.2 0.51 10.1 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF2520) ECH_1 PF00378.20 gi|389849226|ref|YP_006351462.1| - 3.1e-67 226.5 0.1 3.5e-67 226.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389849226|ref|YP_006351462.1| - 2e-38 132.7 0.1 2.8e-31 109.2 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|389849227|ref|YP_006351463.1| - 2.3e-62 210.1 1.9 3.3e-62 209.6 1.9 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|389849227|ref|YP_006351463.1| - 1.4e-30 105.7 0.0 3.2e-30 104.6 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|389849227|ref|YP_006351463.1| - 1.2e-05 25.3 0.2 2.4e-05 24.4 0.2 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|389849227|ref|YP_006351463.1| - 0.00028 21.1 3.4 0.00028 21.1 3.4 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|389849227|ref|YP_006351463.1| - 0.0017 18.0 0.9 0.003 17.2 0.3 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|389849227|ref|YP_006351463.1| - 0.005 17.4 2.6 0.044 14.4 2.6 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|389849227|ref|YP_006351463.1| - 0.014 14.7 0.2 0.045 13.1 0.5 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Thiolase_N PF00108.23 gi|389849228|ref|YP_006351464.1| - 2.2e-58 197.7 0.0 3.2e-57 193.9 0.0 2.4 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389849228|ref|YP_006351464.1| - 8.4e-51 170.8 0.1 1.3e-50 170.2 0.1 1.3 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|389849228|ref|YP_006351464.1| - 0.03 14.5 0.0 0.16 12.1 0.0 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35_N PF12172.8 gi|389849229|ref|YP_006351465.1| - 3.6e-10 39.5 3.5 7.3e-10 38.5 3.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ACP_syn_III_C PF08541.10 gi|389849229|ref|YP_006351465.1| - 0.0075 16.4 0.4 0.0075 16.4 0.4 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OB_aCoA_assoc PF01796.17 gi|389849229|ref|YP_006351465.1| - 0.017 15.1 1.8 0.051 13.6 1.8 1.9 1 0 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|389849230|ref|YP_006351466.1| - 2.8e-25 89.1 0.1 9.2e-25 87.5 0.1 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|389849230|ref|YP_006351466.1| - 3.6e-11 42.8 0.1 1.4e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|389849230|ref|YP_006351466.1| - 7.3e-07 29.0 2.1 7.3e-07 29.0 2.1 2.2 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|389849230|ref|YP_006351466.1| - 0.061 13.2 7.2 0.25 11.2 0.4 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAMSAP_CKK PF08683.11 gi|389849230|ref|YP_006351466.1| - 0.15 12.3 0.0 0.97 9.6 0.0 2.3 3 0 0 3 3 3 0 Microtubule-binding calmodulin-regulated spectrin-associated Ketoacyl-synt_C PF02801.22 gi|389849230|ref|YP_006351466.1| - 0.63 10.1 3.2 2.7 8.0 0.0 3.0 3 1 1 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain AMP-binding_C_2 PF14535.6 gi|389849231|ref|YP_006351467.1| - 1.6e-22 79.6 0.0 3.8e-22 78.4 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|389849231|ref|YP_006351467.1| - 2.2e-16 59.5 0.3 3.8e-15 55.4 0.3 2.0 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|389849231|ref|YP_006351467.1| - 0.0013 17.9 0.1 0.23 10.4 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|389849231|ref|YP_006351467.1| - 0.0014 17.6 0.0 0.008 15.1 0.0 2.0 2 0 0 2 2 2 1 GH3 auxin-responsive promoter 4HBT PF03061.22 gi|389849232|ref|YP_006351468.1| - 4.6e-15 55.7 1.0 7.6e-15 55.0 0.9 1.5 1 1 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|389849232|ref|YP_006351468.1| - 1.5e-08 34.8 0.0 2e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.6 gi|389849232|ref|YP_006351468.1| - 0.0086 15.3 0.3 0.012 14.9 0.3 1.3 1 1 0 1 1 1 1 Polyketide synthase dehydratase 4HBT_3 PF13622.6 gi|389849232|ref|YP_006351468.1| - 0.01 16.1 0.4 0.014 15.7 0.4 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|389849233|ref|YP_006351469.1| - 1.3e-18 66.7 0.0 1.7e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389849233|ref|YP_006351469.1| - 0.0038 17.3 0.2 0.012 15.8 0.2 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Glyoxalase_4 PF13669.6 gi|389849234|ref|YP_006351470.1| - 3.4e-17 62.7 0.3 4.3e-17 62.3 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|389849234|ref|YP_006351470.1| - 3.7e-06 27.2 0.2 4.4e-06 26.9 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|389849234|ref|YP_006351470.1| - 0.0036 18.1 2.0 0.66 10.8 0.1 2.1 1 1 1 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.25 gi|389849234|ref|YP_006351470.1| - 0.02 15.1 0.0 0.056 13.6 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Bac_luciferase PF00296.20 gi|389849235|ref|YP_006351471.1| - 2.7e-53 181.4 0.2 3.2e-53 181.2 0.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Peripla_BP_6 PF13458.6 gi|389849236|ref|YP_006351472.1| - 4.7e-68 230.4 6.3 6.2e-68 230.0 6.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|389849236|ref|YP_006351472.1| - 6.3e-32 111.0 0.2 7.6e-32 110.7 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|389849236|ref|YP_006351472.1| - 1.2e-13 50.9 0.0 1.7e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Glyco_tran_WecB PF03808.13 gi|389849236|ref|YP_006351472.1| - 0.043 13.8 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family DUF1953 PF09196.10 gi|389849236|ref|YP_006351472.1| - 0.19 11.5 0.0 0.41 10.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1953) BPD_transp_2 PF02653.16 gi|389849238|ref|YP_006351474.1| - 4.7e-82 275.2 76.7 5.1e-47 160.3 34.7 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component DUF2749 PF10907.8 gi|389849238|ref|YP_006351474.1| - 0.57 10.4 3.6 2.1 8.6 3.6 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) ABC_tran PF00005.27 gi|389849240|ref|YP_006351476.1| - 6.6e-29 101.2 0.0 8.7e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|389849240|ref|YP_006351476.1| - 7.1e-09 35.4 0.1 1.8e-08 34.1 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|389849240|ref|YP_006351476.1| - 0.0001 22.2 2.2 0.023 14.5 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389849240|ref|YP_006351476.1| - 0.0012 19.4 0.0 0.0014 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389849240|ref|YP_006351476.1| - 0.0033 17.1 0.1 0.0062 16.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|389849240|ref|YP_006351476.1| - 0.014 15.1 0.1 0.023 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|389849240|ref|YP_006351476.1| - 0.018 14.3 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|389849240|ref|YP_006351476.1| - 0.16 12.2 0.1 0.31 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|389849240|ref|YP_006351476.1| - 0.17 11.3 0.2 0.92 8.9 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|389849240|ref|YP_006351476.1| - 0.25 11.5 0.9 0.51 10.4 0.9 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|389849240|ref|YP_006351476.1| - 0.45 10.1 1.6 0.84 9.2 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|389849242|ref|YP_006351478.1| - 4.4e-32 111.5 0.0 6.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849242|ref|YP_006351478.1| - 1.2e-08 35.2 1.4 0.00077 19.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849242|ref|YP_006351478.1| - 0.0053 16.2 0.8 0.21 11.0 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|389849242|ref|YP_006351478.1| - 0.01 16.3 0.5 0.067 13.6 0.4 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|389849242|ref|YP_006351478.1| - 0.014 15.0 0.1 0.035 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|389849242|ref|YP_006351478.1| - 0.014 15.7 2.0 0.15 12.4 0.2 2.6 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|389849242|ref|YP_006351478.1| - 0.015 15.7 0.5 0.021 15.2 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|389849242|ref|YP_006351478.1| - 0.015 15.0 0.1 0.036 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|389849242|ref|YP_006351478.1| - 0.015 15.0 0.5 0.027 14.2 0.5 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389849242|ref|YP_006351478.1| - 0.041 13.6 0.2 0.084 12.6 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MukB PF04310.12 gi|389849242|ref|YP_006351478.1| - 0.05 13.4 0.2 0.12 12.1 0.1 1.6 2 0 0 2 2 2 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|389849242|ref|YP_006351478.1| - 0.052 13.4 0.2 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|389849242|ref|YP_006351478.1| - 0.066 13.7 0.2 0.09 13.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|389849242|ref|YP_006351478.1| - 0.087 12.7 0.8 0.38 10.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|389849242|ref|YP_006351478.1| - 0.09 11.9 0.1 0.18 10.9 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AIG1 PF04548.16 gi|389849242|ref|YP_006351478.1| - 0.13 11.6 1.2 0.27 10.5 0.3 1.8 2 0 0 2 2 2 0 AIG1 family AAA_7 PF12775.7 gi|389849242|ref|YP_006351478.1| - 0.22 11.0 0.1 0.35 10.4 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|389849242|ref|YP_006351478.1| - 0.23 11.5 2.1 0.49 10.5 2.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AMP-binding_C_2 PF14535.6 gi|389849243|ref|YP_006351479.1| - 5.8e-22 77.8 0.0 1.1e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|389849243|ref|YP_006351479.1| - 4.3e-15 55.2 0.2 1.2e-14 53.8 0.2 1.7 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|389849243|ref|YP_006351479.1| - 0.0015 17.5 0.0 0.026 13.4 0.0 2.1 2 0 0 2 2 2 1 GH3 auxin-responsive promoter LuxE PF04443.12 gi|389849243|ref|YP_006351479.1| - 0.055 12.5 0.0 5.2 6.0 0.0 2.1 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE 4HBT PF03061.22 gi|389849244|ref|YP_006351480.1| - 5.4e-14 52.3 0.2 7.6e-14 51.8 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|389849244|ref|YP_006351480.1| - 8.5e-06 25.9 0.0 1.1e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|389849244|ref|YP_006351480.1| - 0.0011 19.2 0.1 0.0016 18.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Aldedh PF00171.22 gi|389849245|ref|YP_006351481.1| - 9.9e-179 594.7 0.1 1.1e-178 594.5 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.14 gi|389849245|ref|YP_006351481.1| - 0.032 14.6 0.1 0.14 12.6 0.1 2.1 1 1 0 1 1 1 0 YCII-related domain FeS_assembly_P PF01883.19 gi|389849247|ref|YP_006351483.1| - 5.2e-11 42.6 0.1 2e-10 40.7 0.1 1.9 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|389849248|ref|YP_006351484.1| - 2.2e-60 204.1 0.7 2.9e-60 203.7 0.7 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|389849248|ref|YP_006351484.1| - 3e-07 30.3 0.2 8.5e-07 28.9 0.1 1.7 1 1 0 2 2 2 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like PaaB PF06243.11 gi|389849249|ref|YP_006351485.1| - 1.6e-19 69.9 0.0 2e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|389849250|ref|YP_006351486.1| - 1.9e-71 240.3 1.6 2.4e-71 240.0 1.6 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.12 gi|389849251|ref|YP_006351487.1| - 1.2e-20 73.0 0.0 1.8e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389849251|ref|YP_006351487.1| - 8.4e-10 38.7 2.4 1.3e-09 38.1 2.4 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|389849251|ref|YP_006351487.1| - 0.0037 16.8 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389849251|ref|YP_006351487.1| - 0.033 14.1 0.0 0.081 12.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 gi|389849251|ref|YP_006351487.1| - 0.065 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ECH_1 PF00378.20 gi|389849252|ref|YP_006351488.1| - 1.1e-58 198.5 0.1 1.3e-58 198.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|389849252|ref|YP_006351488.1| - 4.6e-31 108.5 0.1 5.4e-31 108.3 0.1 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Amidohydro_2 PF04909.14 gi|389849253|ref|YP_006351489.1| - 6.1e-52 177.2 1.9 9.3e-52 176.6 1.9 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|389849253|ref|YP_006351489.1| - 0.0015 18.0 0.0 0.015 14.6 0.0 2.0 2 0 0 2 2 2 1 TatD related DNase Peripla_BP_2 PF01497.18 gi|389849254|ref|YP_006351490.1| - 4.4e-11 42.8 0.0 6.8e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389849254|ref|YP_006351490.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|389849254|ref|YP_006351490.1| - 0.2 11.7 5.5 0.34 10.9 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DUF2268 PF10026.9 gi|389849255|ref|YP_006351491.1| - 0.0038 16.8 0.0 0.0053 16.3 0.0 1.1 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.9 gi|389849255|ref|YP_006351491.1| - 0.16 11.8 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Antimicrobial_8 PF08103.11 gi|389849255|ref|YP_006351491.1| - 0.56 10.5 2.3 1.3 9.3 2.3 1.6 1 0 0 1 1 1 0 Uperin family rve_3 PF13683.6 gi|389849256|ref|YP_006351492.1| - 2.2e-07 30.5 0.0 2.5e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389849256|ref|YP_006351492.1| - 0.049 13.7 0.0 0.049 13.7 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2384) BLM_N PF16202.5 gi|389849257|ref|YP_006351493.1| - 0.16 11.0 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 N-terminal region of Bloom syndrome protein DDE_Tnp_IS240 PF13610.6 gi|389849259|ref|YP_006351495.1| - 1.7e-05 25.1 0.0 1.9e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|389849260|ref|YP_006351496.1| - 0.072 12.6 0.0 0.083 12.3 0.0 1.0 1 0 0 1 1 1 0 Transposase IS66 family DUF4162 PF13732.6 gi|389849262|ref|YP_006351498.1| - 0.019 15.7 0.1 0.024 15.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) LTD PF00932.19 gi|389849263|ref|YP_006351499.1| - 1.4e-06 28.6 0.0 1.8e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain Methyltransf_25 PF13649.6 gi|389849264|ref|YP_006351500.1| - 4.1e-14 53.1 0.0 6.1e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389849264|ref|YP_006351500.1| - 9.4e-12 45.4 0.0 1.9e-11 44.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|389849264|ref|YP_006351500.1| - 9.8e-11 41.4 0.0 1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|389849264|ref|YP_006351500.1| - 3e-10 40.2 0.0 7e-10 39.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|389849264|ref|YP_006351500.1| - 1.9e-09 37.2 0.0 2.6e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|389849264|ref|YP_006351500.1| - 3e-08 33.6 0.0 3.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|389849264|ref|YP_006351500.1| - 5.4e-05 23.9 0.1 0.00011 22.8 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389849264|ref|YP_006351500.1| - 0.00024 20.7 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|389849264|ref|YP_006351500.1| - 0.0014 18.3 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|389849264|ref|YP_006351500.1| - 0.0016 18.0 0.0 0.0018 17.9 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase XPB_DRD PF18458.1 gi|389849264|ref|YP_006351500.1| - 0.038 13.9 0.4 1.2 9.1 0.1 2.8 2 0 0 2 2 2 0 Xeroderma pigmentosum group B helicase damage recognition domain DUF938 PF06080.12 gi|389849264|ref|YP_006351500.1| - 0.041 13.6 0.0 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Cons_hypoth95 PF03602.15 gi|389849264|ref|YP_006351500.1| - 0.045 13.4 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Abhydrolase_1 PF00561.20 gi|389849265|ref|YP_006351501.1| - 3.7e-25 89.0 0.0 9.6e-18 64.7 0.0 2.0 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389849265|ref|YP_006351501.1| - 8.2e-19 69.1 0.2 1.1e-18 68.7 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389849265|ref|YP_006351501.1| - 8.8e-17 61.2 0.0 1.3e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|389849265|ref|YP_006351501.1| - 5.9e-06 25.2 0.0 7.4e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family Abhydrolase_5 PF12695.7 gi|389849265|ref|YP_006351501.1| - 0.0046 16.7 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|389849265|ref|YP_006351501.1| - 0.062 13.4 0.1 0.33 11.0 0.1 1.9 2 0 0 2 2 2 0 Thioesterase domain Peptidase_S15 PF02129.18 gi|389849265|ref|YP_006351501.1| - 0.082 12.5 0.1 0.63 9.6 0.1 2.1 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) UPF0227 PF05728.12 gi|389849265|ref|YP_006351501.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Esterase PF00756.20 gi|389849265|ref|YP_006351501.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Putative esterase FKBP_C PF00254.28 gi|389849266|ref|YP_006351502.1| - 9e-24 83.6 0.1 1.3e-23 83.2 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NADH_oxidored PF08040.11 gi|389849267|ref|YP_006351503.1| - 0.16 11.7 1.5 8.6 6.1 0.2 2.7 2 1 0 2 2 2 0 MNLL subunit BicD PF09730.9 gi|389849268|ref|YP_006351504.1| - 0.00023 19.7 0.5 0.00034 19.2 0.5 1.3 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D Laminin_II PF06009.12 gi|389849268|ref|YP_006351504.1| - 0.00044 20.3 0.6 0.0015 18.6 0.6 1.8 1 0 0 1 1 1 1 Laminin Domain II HHH_8 PF14716.6 gi|389849268|ref|YP_006351504.1| - 0.057 13.8 1.3 1.5 9.2 0.1 3.0 2 1 0 2 2 2 0 Helix-hairpin-helix domain FUSC PF04632.12 gi|389849268|ref|YP_006351504.1| - 0.79 8.2 15.0 0.032 12.8 8.1 1.8 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF4355 PF14265.6 gi|389849268|ref|YP_006351504.1| - 1 9.6 5.6 20 5.4 2.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) Spc7 PF08317.11 gi|389849268|ref|YP_006351504.1| - 3.7 6.3 8.8 1.5 7.6 2.9 2.3 2 1 0 3 3 3 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|389849268|ref|YP_006351504.1| - 8.5 6.5 12.2 0.6 10.2 3.7 3.0 4 0 0 4 4 4 0 TPR/MLP1/MLP2-like protein Usp PF00582.26 gi|389849269|ref|YP_006351505.1| - 5.8e-60 201.9 7.4 1e-29 103.9 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family EspB PF05802.11 gi|389849269|ref|YP_006351505.1| - 1.2 9.1 5.4 0.21 11.6 0.5 1.9 2 0 0 2 2 2 0 Enterobacterial EspB protein CobA_CobO_BtuR PF02572.15 gi|389849270|ref|YP_006351506.1| - 2.5e-53 180.9 0.0 2.9e-53 180.6 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|389849270|ref|YP_006351506.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain TM_helix PF05552.12 gi|389849271|ref|YP_006351507.1| - 0.045 13.7 1.2 0.33 11.0 0.2 2.4 2 0 0 2 2 2 0 Conserved TM helix DUF3094 PF11293.8 gi|389849271|ref|YP_006351507.1| - 0.13 12.0 0.2 24 4.8 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) PhoU PF01895.19 gi|389849273|ref|YP_006351509.1| - 4.9e-15 55.8 4.2 5.6e-09 36.4 0.3 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|389849273|ref|YP_006351509.1| - 0.0013 18.6 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TetR_C_22 PF17928.1 gi|389849273|ref|YP_006351509.1| - 0.042 14.2 0.3 0.11 12.8 0.3 1.7 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF2518 PF10726.9 gi|389849273|ref|YP_006351509.1| - 0.11 12.2 0.3 0.21 11.2 0.3 1.4 1 0 0 1 1 1 0 Protein of function (DUF2518) ABC_tran PF00005.27 gi|389849274|ref|YP_006351510.1| - 9.5e-31 107.1 0.0 1.6e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389849274|ref|YP_006351510.1| - 2e-11 44.2 0.1 7.8e-05 22.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389849274|ref|YP_006351510.1| - 9.3e-08 31.8 0.4 1.4e-05 24.6 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389849274|ref|YP_006351510.1| - 2.6e-05 24.1 0.0 0.00031 20.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|389849274|ref|YP_006351510.1| - 0.00025 21.3 0.0 0.0011 19.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|389849274|ref|YP_006351510.1| - 0.00034 20.3 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|389849274|ref|YP_006351510.1| - 0.0007 20.0 0.5 0.0032 17.9 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389849274|ref|YP_006351510.1| - 0.00071 19.5 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|389849274|ref|YP_006351510.1| - 0.0035 17.0 0.2 0.02 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|389849274|ref|YP_006351510.1| - 0.0046 17.5 0.1 0.0092 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|389849274|ref|YP_006351510.1| - 0.0059 16.6 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain DeoRC PF00455.22 gi|389849274|ref|YP_006351510.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|389849274|ref|YP_006351510.1| - 0.019 14.7 0.2 0.96 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|389849274|ref|YP_006351510.1| - 0.032 13.8 0.0 0.095 12.3 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.18 gi|389849274|ref|YP_006351510.1| - 0.05 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|389849274|ref|YP_006351510.1| - 0.053 14.1 0.0 0.17 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|389849274|ref|YP_006351510.1| - 0.062 13.5 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|389849274|ref|YP_006351510.1| - 0.1 11.4 0.0 3.3 6.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NYN_YacP PF05991.11 gi|389849274|ref|YP_006351510.1| - 0.11 12.4 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 YacP-like NYN domain DUF5623 PF18536.1 gi|389849274|ref|YP_006351510.1| - 0.15 12.4 0.0 0.35 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) AAA PF00004.29 gi|389849274|ref|YP_006351510.1| - 0.17 12.3 0.0 1.5 9.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Adeno_IVa2 PF02456.15 gi|389849274|ref|YP_006351510.1| - 0.25 10.1 0.0 2.3 6.9 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|389849275|ref|YP_006351511.1| - 6.9e-24 84.6 11.2 6.9e-24 84.6 11.2 4.5 1 1 4 5 5 5 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389849276|ref|YP_006351512.1| - 6.2e-20 71.7 11.1 6.2e-20 71.7 11.1 2.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|389849277|ref|YP_006351513.1| - 4.6e-22 79.0 0.4 4.6e-22 79.0 0.4 1.5 2 0 0 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|389849277|ref|YP_006351513.1| - 1.7e-14 53.4 0.0 2.9e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|389849277|ref|YP_006351513.1| - 0.0062 16.3 0.5 0.012 15.4 0.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence FlaC_arch PF05377.11 gi|389849278|ref|YP_006351514.1| - 1.5e-07 31.7 0.4 0.1 13.0 0.0 3.9 4 0 0 4 4 3 2 Flagella accessory protein C (FlaC) XhlA PF10779.9 gi|389849278|ref|YP_006351514.1| - 7.6e-07 29.2 1.5 2.7 8.3 0.2 4.3 3 1 1 4 4 4 2 Haemolysin XhlA DUF1664 PF07889.12 gi|389849278|ref|YP_006351514.1| - 0.00018 21.5 2.2 1.7 8.7 0.1 3.6 3 1 0 3 3 3 1 Protein of unknown function (DUF1664) Tropomyosin PF00261.20 gi|389849278|ref|YP_006351514.1| - 0.00027 20.4 4.5 0.00056 19.4 0.3 2.4 2 1 1 3 3 3 1 Tropomyosin Spc7 PF08317.11 gi|389849278|ref|YP_006351514.1| - 0.00037 19.5 3.0 0.017 14.0 0.4 2.8 1 1 2 3 3 3 2 Spc7 kinetochore protein HSBP1 PF06825.12 gi|389849278|ref|YP_006351514.1| - 0.00041 20.1 2.6 11 6.0 0.2 4.3 4 0 0 4 4 4 0 Heat shock factor binding protein 1 DUF16 PF01519.16 gi|389849278|ref|YP_006351514.1| - 0.00057 20.3 0.3 10 6.7 0.1 3.4 2 1 1 3 3 3 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|389849278|ref|YP_006351514.1| - 0.0011 19.2 2.2 7.6 6.9 0.0 3.4 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|389849278|ref|YP_006351514.1| - 0.0037 17.7 11.0 4.7 7.7 1.3 4.6 2 1 3 5 5 4 1 Nucleopolyhedrovirus P10 protein TBCC_N PF16752.5 gi|389849278|ref|YP_006351514.1| - 0.0062 17.0 0.5 12 6.3 0.0 3.8 3 1 1 4 4 4 0 Tubulin-specific chaperone C N-terminal domain Laminin_II PF06009.12 gi|389849278|ref|YP_006351514.1| - 0.0066 16.5 5.6 0.24 11.4 0.6 3.3 1 1 2 3 3 3 2 Laminin Domain II DUF3037 PF11236.8 gi|389849278|ref|YP_006351514.1| - 0.0099 16.3 1.1 18 5.8 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3037) EzrA PF06160.12 gi|389849278|ref|YP_006351514.1| - 0.018 13.3 0.4 0.17 10.0 0.1 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|389849278|ref|YP_006351514.1| - 0.019 15.0 4.7 1.8 8.6 0.4 3.2 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2802 PF10975.8 gi|389849278|ref|YP_006351514.1| - 0.029 14.5 1.0 5.2 7.3 0.1 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2802) KASH_CCD PF14662.6 gi|389849278|ref|YP_006351514.1| - 0.07 12.9 0.5 0.57 10.0 0.0 2.4 3 0 0 3 3 3 0 Coiled-coil region of CCDC155 or KASH HR1 PF02185.16 gi|389849278|ref|YP_006351514.1| - 0.096 12.8 0.4 2.6 8.2 0.1 3.0 3 0 0 3 3 3 0 Hr1 repeat Noelin-1 PF12308.8 gi|389849278|ref|YP_006351514.1| - 0.12 12.4 0.1 1 9.4 0.0 2.4 2 1 1 3 3 3 0 Neurogenesis glycoprotein UPF0184 PF03670.13 gi|389849278|ref|YP_006351514.1| - 0.12 12.8 9.9 9.4 6.7 0.0 3.8 3 1 1 4 4 3 0 Uncharacterised protein family (UPF0184) DUF4795 PF16043.5 gi|389849278|ref|YP_006351514.1| - 0.12 11.9 0.5 0.61 9.7 0.3 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) Fez1 PF06818.15 gi|389849278|ref|YP_006351514.1| - 0.12 12.8 0.5 1.1 9.7 0.2 2.1 1 1 1 2 2 2 0 Fez1 CorA PF01544.18 gi|389849278|ref|YP_006351514.1| - 0.14 11.5 10.0 0.07 12.4 2.0 2.2 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein AAA_13 PF13166.6 gi|389849278|ref|YP_006351514.1| - 0.14 10.8 0.3 0.24 10.0 0.3 1.3 1 0 0 1 1 1 0 AAA domain L31 PF09784.9 gi|389849278|ref|YP_006351514.1| - 0.21 12.0 0.5 27 5.3 0.1 2.8 3 0 0 3 3 3 0 Mitochondrial ribosomal protein L31 Tropomyosin_1 PF12718.7 gi|389849278|ref|YP_006351514.1| - 0.25 11.5 7.7 0.65 10.1 1.8 3.1 2 1 0 2 2 2 0 Tropomyosin like MtrG PF04210.13 gi|389849278|ref|YP_006351514.1| - 0.32 10.9 3.2 27 4.7 0.0 3.5 4 0 0 4 4 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Syntaxin-6_N PF09177.11 gi|389849278|ref|YP_006351514.1| - 0.44 11.1 7.1 2.5 8.7 3.4 3.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal LPP PF04728.13 gi|389849278|ref|YP_006351514.1| - 0.51 10.8 6.8 46 4.5 0.0 4.1 3 1 0 3 3 3 0 Lipoprotein leucine-zipper DUF948 PF06103.11 gi|389849278|ref|YP_006351514.1| - 0.88 9.9 10.8 31 4.9 0.9 3.9 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) ABC_tran_CTD PF16326.5 gi|389849278|ref|YP_006351514.1| - 1.2 9.5 7.1 18 5.7 0.2 3.8 3 1 0 3 3 3 0 ABC transporter C-terminal domain DUF2937 PF11157.8 gi|389849278|ref|YP_006351514.1| - 1.3 8.7 4.3 6.4 6.5 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2937) ATG16 PF08614.11 gi|389849278|ref|YP_006351514.1| - 2.1 8.5 11.6 12 6.1 0.1 3.2 3 0 0 3 3 3 0 Autophagy protein 16 (ATG16) SNARE PF05739.19 gi|389849278|ref|YP_006351514.1| - 2.3 8.3 5.5 3.7 7.6 0.4 3.3 3 0 0 3 3 3 0 SNARE domain DUF4164 PF13747.6 gi|389849278|ref|YP_006351514.1| - 2.3 8.5 11.2 9 6.7 5.2 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Sod_Fe_N PF00081.22 gi|389849279|ref|YP_006351515.1| - 1.4e-30 105.6 1.2 2.2e-30 104.9 1.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|389849279|ref|YP_006351515.1| - 5.5e-27 93.9 0.0 8.6e-27 93.3 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain TrmB PF01978.19 gi|389849280|ref|YP_006351516.1| - 0.0001 22.1 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|389849280|ref|YP_006351516.1| - 0.00018 21.4 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|389849280|ref|YP_006351516.1| - 0.0022 18.3 0.0 0.0052 17.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|389849280|ref|YP_006351516.1| - 0.0042 17.1 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389849280|ref|YP_006351516.1| - 0.0087 16.2 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|389849280|ref|YP_006351516.1| - 0.015 15.1 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389849280|ref|YP_006351516.1| - 0.02 15.4 0.0 0.04 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|389849280|ref|YP_006351516.1| - 0.098 12.8 0.0 0.29 11.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) UCR_Fe-S_N PF10399.9 gi|389849281|ref|YP_006351517.1| - 0.52 9.7 3.1 0.42 10.0 0.4 2.2 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Sugarporin_N PF11471.8 gi|389849282|ref|YP_006351518.1| - 0.67 10.0 3.0 0.59 10.1 0.9 2.0 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension MarR_2 PF12802.7 gi|389849283|ref|YP_006351519.1| - 5.5e-09 35.8 0.1 9.5e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389849283|ref|YP_006351519.1| - 1.3e-07 31.4 0.1 2.5e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389849283|ref|YP_006351519.1| - 1.9e-07 30.9 0.2 3.5e-07 30.0 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389849283|ref|YP_006351519.1| - 3.7e-07 29.6 0.1 6.5e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|389849283|ref|YP_006351519.1| - 1.8e-05 24.4 0.1 3e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|389849283|ref|YP_006351519.1| - 3.1e-05 23.6 0.7 7.9e-05 22.3 0.2 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|389849283|ref|YP_006351519.1| - 5.8e-05 22.9 0.0 9.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|389849283|ref|YP_006351519.1| - 0.00012 22.2 0.1 0.00023 21.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.11 gi|389849283|ref|YP_006351519.1| - 0.00013 21.4 0.2 0.0003 20.2 0.1 1.6 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) GntR PF00392.21 gi|389849283|ref|YP_006351519.1| - 0.00038 20.0 0.3 0.00064 19.3 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|389849283|ref|YP_006351519.1| - 0.00057 20.3 0.2 0.0015 19.0 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|389849283|ref|YP_006351519.1| - 0.002 18.0 0.1 0.0035 17.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|389849283|ref|YP_006351519.1| - 0.0057 16.6 0.2 0.011 15.7 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389849283|ref|YP_006351519.1| - 0.0083 16.2 0.2 0.015 15.3 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|389849283|ref|YP_006351519.1| - 0.009 15.8 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Penicillinase_R PF03965.16 gi|389849283|ref|YP_006351519.1| - 0.014 15.8 0.2 0.032 14.6 0.2 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.6 gi|389849283|ref|YP_006351519.1| - 0.043 13.8 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|389849283|ref|YP_006351519.1| - 0.046 13.7 0.1 0.1 12.5 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain TBPIP PF07106.13 gi|389849283|ref|YP_006351519.1| - 0.052 13.5 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Rrf2 PF02082.20 gi|389849283|ref|YP_006351519.1| - 0.063 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.12 gi|389849283|ref|YP_006351519.1| - 0.064 12.6 0.0 0.084 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit FUR PF01475.19 gi|389849283|ref|YP_006351519.1| - 0.08 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Phage_rep_O PF04492.13 gi|389849283|ref|YP_006351519.1| - 0.11 13.0 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O Lung_7-TM_R PF06814.13 gi|389849286|ref|YP_006351522.1| - 0.77 8.9 3.9 0.24 10.6 0.7 1.7 2 0 0 2 2 2 0 Lung seven transmembrane receptor DUF2384 PF09722.10 gi|389849287|ref|YP_006351523.1| - 0.026 14.6 0.2 0.042 13.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Multi_Drug_Res PF00893.19 gi|389849288|ref|YP_006351524.1| - 2.2e-25 89.2 2.7 2.9e-25 88.7 2.7 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|389849288|ref|YP_006351524.1| - 0.062 13.5 6.2 0.069 13.3 5.1 1.5 1 1 1 2 2 2 0 EamA-like transporter family TPT PF03151.16 gi|389849288|ref|YP_006351524.1| - 0.12 11.7 2.7 0.15 11.4 2.7 1.2 1 0 0 1 1 1 0 Triose-phosphate Transporter family TrmB PF01978.19 gi|389849289|ref|YP_006351525.1| - 4.8e-19 68.0 0.1 1e-18 67.0 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|389849289|ref|YP_006351525.1| - 0.0058 16.7 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain PadR PF03551.14 gi|389849289|ref|YP_006351525.1| - 0.087 12.8 0.0 0.4 10.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family adh_short_C2 PF13561.6 gi|389849290|ref|YP_006351526.1| - 1.8e-68 230.6 6.9 2.2e-68 230.3 6.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389849290|ref|YP_006351526.1| - 1.1e-60 204.5 1.3 1.3e-60 204.2 1.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849290|ref|YP_006351526.1| - 1.7e-19 70.5 1.2 2.7e-19 69.8 1.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389849290|ref|YP_006351526.1| - 3.2e-06 26.8 0.4 5.6e-06 26.0 0.4 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|389849290|ref|YP_006351526.1| - 7.1e-05 22.8 8.0 0.00011 22.2 8.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|389849290|ref|YP_006351526.1| - 0.00023 21.4 0.2 0.00054 20.2 0.1 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GDP_Man_Dehyd PF16363.5 gi|389849290|ref|YP_006351526.1| - 0.0012 18.3 0.0 0.0023 17.4 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|389849290|ref|YP_006351526.1| - 0.005 16.0 0.0 0.0063 15.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|389849290|ref|YP_006351526.1| - 0.019 14.5 1.9 0.022 14.4 1.0 1.5 2 0 0 2 2 2 0 NmrA-like family THF_DHG_CYH_C PF02882.19 gi|389849290|ref|YP_006351526.1| - 0.024 13.9 0.4 0.074 12.4 0.1 1.9 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 gi|389849290|ref|YP_006351526.1| - 0.049 13.9 0.5 0.12 12.7 0.5 1.6 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|389849290|ref|YP_006351526.1| - 0.062 12.7 0.5 0.11 11.8 0.1 1.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LytR_C PF13399.6 gi|389849290|ref|YP_006351526.1| - 0.26 12.3 6.3 0.24 12.4 0.8 2.6 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Acyl_transf_1 PF00698.21 gi|389849291|ref|YP_006351527.1| - 9.8e-35 120.6 1.6 1.2e-34 120.2 1.6 1.0 1 0 0 1 1 1 1 Acyl transferase domain DUF2974 PF11187.8 gi|389849291|ref|YP_006351527.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) ACPS PF01648.20 gi|389849292|ref|YP_006351528.1| - 1.4e-15 57.4 0.0 1.6e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily ketoacyl-synt PF00109.26 gi|389849293|ref|YP_006351529.1| - 4.3e-51 173.9 7.8 4.5e-51 173.9 4.7 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|389849293|ref|YP_006351529.1| - 6e-31 106.9 2.1 1.6e-30 105.5 1.7 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 gi|389849293|ref|YP_006351529.1| - 5.1e-05 22.8 2.4 0.00011 21.6 0.3 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain PP-binding PF00550.25 gi|389849294|ref|YP_006351530.1| - 1.5e-13 50.8 0.7 1.7e-13 50.7 0.7 1.0 1 0 0 1 1 1 1 Phosphopantetheine attachment site Ribosomal_L50 PF10501.9 gi|389849294|ref|YP_006351530.1| - 0.045 13.9 0.0 0.066 13.4 0.0 1.5 1 1 0 1 1 1 0 Ribosomal subunit 39S PP-binding_2 PF14573.6 gi|389849294|ref|YP_006351530.1| - 0.066 13.4 0.6 0.1 12.8 0.3 1.3 1 1 0 1 1 1 0 Acyl-carrier ADH_zinc_N PF00107.26 gi|389849295|ref|YP_006351531.1| - 2.4e-29 101.9 0.7 4.2e-29 101.2 0.7 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389849295|ref|YP_006351531.1| - 1e-23 84.9 0.7 1.8e-23 84.0 0.7 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389849295|ref|YP_006351531.1| - 1.6e-07 31.2 0.0 6.3e-07 29.3 0.0 1.9 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain YjeF_N PF03853.15 gi|389849295|ref|YP_006351531.1| - 0.033 14.1 0.7 0.07 13.0 0.7 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus adh_short PF00106.25 gi|389849295|ref|YP_006351531.1| - 0.058 12.8 0.9 0.092 12.2 0.9 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Ribonuc_red_sm PF00268.21 gi|389849296|ref|YP_006351532.1| - 3e-07 30.2 0.0 3.8e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.8 gi|389849296|ref|YP_006351532.1| - 0.054 12.8 5.9 1.4 8.1 0.3 2.8 2 1 0 3 3 3 0 P-aminobenzoate N-oxygenase AurF Thiamine_BP PF01910.17 gi|389849297|ref|YP_006351533.1| - 6.6e-21 74.0 0.1 7.5e-21 73.9 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Ykof PF07615.11 gi|389849297|ref|YP_006351533.1| - 0.12 12.9 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 YKOF-related Family Response_reg PF00072.24 gi|389849298|ref|YP_006351534.1| - 7.2e-18 64.8 0.0 1.5e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|389849298|ref|YP_006351534.1| - 2.7e-11 43.9 0.7 8.4e-11 42.3 0.7 1.8 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|389849298|ref|YP_006351534.1| - 0.00093 19.5 0.4 0.0025 18.2 0.4 1.8 1 1 0 1 1 1 1 GAF domain GAF PF01590.26 gi|389849298|ref|YP_006351534.1| - 0.0029 18.2 0.0 0.0042 17.7 0.0 1.3 1 0 0 1 1 1 1 GAF domain DRE2_N PF16803.5 gi|389849298|ref|YP_006351534.1| - 0.03 14.6 1.2 9.5 6.5 0.0 2.8 3 0 0 3 3 3 0 Fe-S cluster assembly protein DRE2 N-terminus Abhydrolase_1 PF00561.20 gi|389849299|ref|YP_006351535.1| - 2.6e-19 69.9 0.0 3.7e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|389849299|ref|YP_006351535.1| - 8.4e-13 48.3 0.0 1.5e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|389849299|ref|YP_006351535.1| - 7.7e-12 45.0 0.0 1.9e-06 27.3 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 HHH_5 PF14520.6 gi|389849299|ref|YP_006351535.1| - 5.5e-07 30.1 0.1 1.5e-06 28.7 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3141 PF11339.8 gi|389849299|ref|YP_006351535.1| - 2.8e-05 22.8 0.0 0.0016 17.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.18 gi|389849299|ref|YP_006351535.1| - 5.4e-05 22.8 0.0 0.0013 18.3 0.1 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family PHB_depo_C PF06850.11 gi|389849299|ref|YP_006351535.1| - 0.00073 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF4332 PF14229.6 gi|389849299|ref|YP_006351535.1| - 0.0014 18.8 0.0 0.0037 17.5 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) FSH1 PF03959.13 gi|389849299|ref|YP_006351535.1| - 0.0016 18.2 0.0 0.0084 15.8 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Cdd1 PF11731.8 gi|389849299|ref|YP_006351535.1| - 0.004 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus Abhydrolase_6 PF12697.7 gi|389849299|ref|YP_006351535.1| - 0.0057 17.3 0.1 0.0088 16.7 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|389849299|ref|YP_006351535.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Usp PF00582.26 gi|389849301|ref|YP_006351537.1| - 3.9e-21 76.0 1.5 4.3e-21 75.9 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|389849301|ref|YP_006351537.1| - 0.032 13.7 0.8 0.046 13.2 0.6 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel CTP_transf_like PF01467.26 gi|389849302|ref|YP_006351538.1| - 8.1e-09 35.8 0.1 1.7e-08 34.8 0.1 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|389849302|ref|YP_006351538.1| - 0.006 16.5 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 FAD synthetase CBS PF00571.28 gi|389849303|ref|YP_006351539.1| - 1.7e-19 70.0 1.2 3e-09 37.2 0.1 2.7 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|389849303|ref|YP_006351539.1| - 8.8e-19 67.3 0.0 1.5e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389849303|ref|YP_006351539.1| - 8.7e-06 25.9 0.0 2.2e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|389849303|ref|YP_006351539.1| - 0.0061 16.9 0.1 0.014 15.7 0.1 1.7 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|389849303|ref|YP_006351539.1| - 0.013 16.0 0.0 0.028 14.9 0.0 1.5 1 1 0 1 1 1 0 Thioesterase-like superfamily TALPID3 PF15324.6 gi|389849304|ref|YP_006351540.1| - 0.53 7.9 4.6 0.76 7.4 4.6 1.1 1 0 0 1 1 1 0 Hedgehog signalling target Copper-bind PF00127.20 gi|389849305|ref|YP_006351541.1| - 3.6e-08 33.7 0.0 5.1e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389849305|ref|YP_006351541.1| - 2.2e-05 24.5 0.0 7.3e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.15 gi|389849305|ref|YP_006351541.1| - 0.003 17.5 0.1 0.0051 16.8 0.1 1.5 1 1 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|389849305|ref|YP_006351541.1| - 0.005 16.6 0.1 0.025 14.3 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase SoxE PF06525.11 gi|389849305|ref|YP_006351541.1| - 0.036 13.5 0.0 0.079 12.4 0.0 1.8 1 1 0 1 1 1 0 Sulfocyanin (SoxE) domain DUF3553 PF12073.8 gi|389849305|ref|YP_006351541.1| - 0.054 13.2 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) TAT_signal PF10518.9 gi|389849305|ref|YP_006351541.1| - 0.077 12.9 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TALPID3 PF15324.6 gi|389849305|ref|YP_006351541.1| - 0.25 8.9 5.5 0.25 9.0 5.5 1.1 1 0 0 1 1 1 0 Hedgehog signalling target DUF3558 PF12079.8 gi|389849305|ref|YP_006351541.1| - 2.9 7.9 12.3 5.6 6.9 12.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DUF1254 PF06863.12 gi|389849306|ref|YP_006351542.1| - 0.19 11.8 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1254) HxlR PF01638.17 gi|389849307|ref|YP_006351543.1| - 3.2e-26 91.0 0.0 3.9e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389849307|ref|YP_006351543.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|389849307|ref|YP_006351543.1| - 0.074 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain BAT PF15915.5 gi|389849308|ref|YP_006351544.1| - 4.3e-43 146.9 4.7 4.3e-43 146.9 4.7 2.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|389849308|ref|YP_006351544.1| - 4.7e-37 126.4 0.0 8.8e-15 54.8 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|389849308|ref|YP_006351544.1| - 2.7e-27 95.0 0.0 6.2e-10 39.1 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|389849308|ref|YP_006351544.1| - 4.7e-24 84.8 0.8 1.2e-08 35.2 0.0 4.3 3 1 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|389849308|ref|YP_006351544.1| - 2.5e-22 78.4 0.1 6.6e-22 77.1 0.1 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.7 gi|389849308|ref|YP_006351544.1| - 3.8e-21 74.6 0.0 6.8e-08 32.4 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|389849308|ref|YP_006351544.1| - 5.1e-19 68.4 0.0 2.3e-05 24.6 0.0 4.8 3 1 1 4 4 4 4 PAS fold GAF_2 PF13185.6 gi|389849308|ref|YP_006351544.1| - 1.9e-15 57.4 6.6 4e-07 30.4 0.3 3.0 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.6 gi|389849308|ref|YP_006351544.1| - 3.5e-09 37.1 0.6 0.00059 20.2 0.1 2.7 2 1 0 2 2 2 2 GAF domain GAF PF01590.26 gi|389849308|ref|YP_006351544.1| - 0.00013 22.7 0.2 0.32 11.6 0.0 2.8 2 0 0 2 2 2 2 GAF domain PAS_7 PF12860.7 gi|389849308|ref|YP_006351544.1| - 0.0022 18.2 0.0 0.54 10.4 0.0 3.6 3 0 0 3 3 3 1 PAS fold Sigma70_r4_2 PF08281.12 gi|389849308|ref|YP_006351544.1| - 0.0026 17.4 0.6 0.0073 16.0 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 DUF134 PF02001.16 gi|389849308|ref|YP_006351544.1| - 0.01 16.4 0.0 0.028 15.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|389849308|ref|YP_006351544.1| - 0.015 14.8 0.0 0.041 13.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|389849308|ref|YP_006351544.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389849309|ref|YP_006351545.1| - 1.2e-05 25.1 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|389849309|ref|YP_006351545.1| - 8e-05 22.5 0.1 0.00015 21.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|389849309|ref|YP_006351545.1| - 0.00021 21.2 0.0 0.00037 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|389849309|ref|YP_006351545.1| - 0.0005 20.1 0.1 0.001 19.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|389849309|ref|YP_006351545.1| - 0.0006 19.6 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389849309|ref|YP_006351545.1| - 0.00078 19.3 0.1 0.0022 17.8 0.1 1.8 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|389849309|ref|YP_006351545.1| - 0.00078 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|389849309|ref|YP_006351545.1| - 0.00092 19.3 0.4 0.0021 18.2 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|389849309|ref|YP_006351545.1| - 0.0011 18.7 0.4 0.0021 17.8 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|389849309|ref|YP_006351545.1| - 0.002 17.6 0.1 0.0033 16.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|389849309|ref|YP_006351545.1| - 0.0032 17.3 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|389849309|ref|YP_006351545.1| - 0.0055 16.7 0.1 0.0097 15.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 gi|389849309|ref|YP_006351545.1| - 0.0084 16.0 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF1724 PF08350.10 gi|389849309|ref|YP_006351545.1| - 0.0085 16.2 0.3 0.021 14.9 0.0 1.9 2 1 0 2 2 1 1 Domain of unknown function (DUF1724) HTH_Crp_2 PF13545.6 gi|389849309|ref|YP_006351545.1| - 0.015 15.3 0.1 0.032 14.2 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|389849309|ref|YP_006351545.1| - 0.017 15.6 0.1 0.034 14.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|389849309|ref|YP_006351545.1| - 0.079 12.9 0.1 0.2 11.6 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|389849309|ref|YP_006351545.1| - 0.091 13.0 0.0 0.24 11.6 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|389849309|ref|YP_006351545.1| - 0.098 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|389849309|ref|YP_006351545.1| - 0.1 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MmgE_PrpD PF03972.14 gi|389849310|ref|YP_006351546.1| - 0.014 14.0 0.0 0.018 13.6 0.0 1.1 1 0 0 1 1 1 0 MmgE/PrpD family OstA PF03968.14 gi|389849311|ref|YP_006351547.1| - 0.0028 17.8 0.8 0.0081 16.3 0.8 1.8 1 1 0 1 1 1 1 OstA-like protein DUF2345 PF10106.9 gi|389849311|ref|YP_006351547.1| - 0.0046 16.8 0.0 0.98 9.3 0.0 2.8 2 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2345) FecR PF04773.13 gi|389849311|ref|YP_006351547.1| - 0.025 15.2 0.1 22 5.8 0.0 3.3 1 1 2 3 3 3 0 FecR protein DUF3540 PF12059.8 gi|389849311|ref|YP_006351547.1| - 0.047 13.5 0.0 5.7 6.7 0.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3540) DUF3060 PF11259.8 gi|389849311|ref|YP_006351547.1| - 0.078 12.7 4.7 4.1 7.2 0.2 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF3060) Cadherin-like PF12733.7 gi|389849311|ref|YP_006351547.1| - 1.3 9.6 10.0 1.1e+03 0.2 10.0 3.3 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain BACK PF07707.15 gi|389849311|ref|YP_006351547.1| - 1.3 9.2 15.8 2.2 8.4 0.9 3.3 1 1 2 3 3 3 0 BTB And C-terminal Kelch DUF2218 PF09981.9 gi|389849312|ref|YP_006351548.1| - 6.8 7.1 19.8 2.2 8.7 0.3 6.0 3 2 2 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2218) HxlR PF01638.17 gi|389849314|ref|YP_006351550.1| - 1.8e-19 69.4 0.0 2.3e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|389849314|ref|YP_006351550.1| - 0.0076 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389849314|ref|YP_006351550.1| - 0.008 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|389849314|ref|YP_006351550.1| - 0.015 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|389849314|ref|YP_006351550.1| - 0.025 14.7 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|389849314|ref|YP_006351550.1| - 0.047 14.2 0.0 0.077 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|389849314|ref|YP_006351550.1| - 0.049 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LPD38 PF18857.1 gi|389849314|ref|YP_006351550.1| - 0.14 12.3 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Large polyvalent protein associated domain 38 HTH_12 PF08461.10 gi|389849314|ref|YP_006351550.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain APC_r PF05923.12 gi|389849314|ref|YP_006351550.1| - 1.3 8.8 5.6 21 5.0 0.0 3.4 3 0 0 3 3 3 0 APC repeat HxlR PF01638.17 gi|389849316|ref|YP_006351552.1| - 1.4e-27 95.3 0.1 1.8e-27 95.0 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389849316|ref|YP_006351552.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|389849316|ref|YP_006351552.1| - 0.013 15.7 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|389849316|ref|YP_006351552.1| - 0.026 14.6 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HtaA PF04213.13 gi|389849318|ref|YP_006351554.1| - 5.2e-06 27.0 0.2 0.034 14.6 0.1 3.0 1 1 2 3 3 3 2 Htaa Glyco_hydro_65C PF03633.15 gi|389849318|ref|YP_006351554.1| - 2e-05 24.4 2.3 5.1 7.1 0.1 4.9 3 1 2 5 5 5 3 Glycosyl hydrolase family 65, C-terminal domain DUF4968 PF16338.5 gi|389849318|ref|YP_006351554.1| - 0.0041 17.4 0.2 0.59 10.5 0.0 3.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4968) FecR PF04773.13 gi|389849318|ref|YP_006351554.1| - 0.058 14.0 0.7 13 6.5 0.2 3.8 2 2 1 3 3 3 0 FecR protein Arch_flagellin PF01917.16 gi|389849318|ref|YP_006351554.1| - 0.27 11.4 5.9 0.14 12.3 0.4 2.4 1 1 1 2 2 2 0 Archaebacterial flagellin Phage_H_T_join PF05521.11 gi|389849319|ref|YP_006351555.1| - 0.063 13.8 0.9 0.39 11.3 0.9 2.4 1 0 0 1 1 1 0 Phage head-tail joining protein DUF5010_C PF18099.1 gi|389849319|ref|YP_006351555.1| - 5.6 7.1 6.5 4.4 7.5 2.6 2.7 2 0 0 2 2 2 0 DUF5010 C-terminal domain YabP PF07873.11 gi|389849320|ref|YP_006351556.1| - 0.4 10.5 3.2 25 4.8 0.0 3.6 4 0 0 4 4 4 0 YabP family DUF3868 PF12984.7 gi|389849320|ref|YP_006351556.1| - 2.5 7.9 9.8 47 3.8 0.0 5.8 5 2 2 7 7 7 0 Domain of unknown function, B. Theta Gene description (DUF3868) FecR PF04773.13 gi|389849321|ref|YP_006351557.1| - 0.052 14.2 0.0 43 4.8 0.0 4.5 3 1 1 5 5 5 0 FecR protein DUF3868 PF12984.7 gi|389849321|ref|YP_006351557.1| - 1 9.2 10.9 21 5.0 0.0 6.1 5 1 3 8 8 8 0 Domain of unknown function, B. Theta Gene description (DUF3868) DUF2807 PF10988.8 gi|389849321|ref|YP_006351557.1| - 3.5 7.4 12.6 0.34 10.7 2.6 3.4 1 1 2 3 3 3 0 Putative auto-transporter adhesin, head GIN domain HxlR PF01638.17 gi|389849322|ref|YP_006351558.1| - 2.9e-16 59.1 0.0 3.2e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|389849322|ref|YP_006351558.1| - 0.016 15.1 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 gi|389849322|ref|YP_006351558.1| - 0.12 11.9 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain BAT PF15915.5 gi|389849323|ref|YP_006351559.1| - 1.6e-41 141.7 7.1 1.6e-41 141.7 7.1 3.5 3 1 0 3 3 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|389849323|ref|YP_006351559.1| - 1.1e-34 118.8 0.0 5.7e-13 49.0 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|389849323|ref|YP_006351559.1| - 1.5e-34 118.4 0.0 4.7e-11 42.7 0.0 4.2 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|389849323|ref|YP_006351559.1| - 1.2e-23 83.4 5.6 4.3e-08 33.4 0.1 4.8 4 1 0 4 4 3 3 PAS fold HTH_10 PF04967.12 gi|389849323|ref|YP_006351559.1| - 2.8e-22 78.3 0.6 3.6e-21 74.7 0.1 2.6 2 0 0 2 2 2 1 HTH DNA binding domain PAS_8 PF13188.7 gi|389849323|ref|YP_006351559.1| - 4.5e-22 77.6 0.3 6e-07 29.3 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|389849323|ref|YP_006351559.1| - 3.1e-19 69.6 3.1 1.9e-09 38.0 0.0 3.0 3 0 0 3 3 2 2 GAF domain PAS_3 PF08447.12 gi|389849323|ref|YP_006351559.1| - 3.8e-10 39.9 0.0 0.025 14.9 0.0 4.6 3 1 1 4 4 4 2 PAS fold PAS_7 PF12860.7 gi|389849323|ref|YP_006351559.1| - 2.1e-07 31.1 0.1 0.25 11.5 0.0 4.6 4 1 0 4 4 4 2 PAS fold Sigma70_r4 PF04545.16 gi|389849323|ref|YP_006351559.1| - 6.3e-06 25.6 0.0 1.9e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 GAF_3 PF13492.6 gi|389849323|ref|YP_006351559.1| - 1.6e-05 25.2 0.1 0.013 15.9 0.0 2.7 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.12 gi|389849323|ref|YP_006351559.1| - 0.00013 21.6 0.7 0.0019 17.8 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 GAF PF01590.26 gi|389849323|ref|YP_006351559.1| - 0.0036 17.9 0.0 0.23 12.1 0.0 3.2 2 1 0 2 2 2 1 GAF domain GerE PF00196.19 gi|389849323|ref|YP_006351559.1| - 0.016 14.8 0.0 0.045 13.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PAS_12 PF18095.1 gi|389849323|ref|YP_006351559.1| - 0.017 14.7 0.0 5.1 6.7 0.0 2.9 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain DUF3369 PF11849.8 gi|389849323|ref|YP_006351559.1| - 0.02 15.1 0.0 0.1 12.8 0.0 2.2 2 1 0 2 2 1 0 Domain of unknown function (DUF3369) HTH_Tnp_1_2 PF13022.6 gi|389849323|ref|YP_006351559.1| - 0.024 14.8 0.1 0.078 13.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_20 PF12840.7 gi|389849323|ref|YP_006351559.1| - 0.04 14.0 0.1 0.13 12.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|389849323|ref|YP_006351559.1| - 0.065 13.3 0.0 0.2 11.8 0.0 1.9 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.14 gi|389849323|ref|YP_006351559.1| - 0.11 12.8 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like PHINT_rpt PF14882.6 gi|389849323|ref|YP_006351559.1| - 0.18 12.1 0.1 0.88 9.9 0.0 2.1 2 0 0 2 2 2 0 Phage-integrase repeat unit MORN_2 PF07661.13 gi|389849324|ref|YP_006351560.1| - 1.5e-06 27.7 0.0 5.8 7.5 0.0 5.1 5 0 0 5 5 5 3 MORN repeat variant zinc_ribbon_9 PF14369.6 gi|389849324|ref|YP_006351560.1| - 0.016 15.4 0.5 0.046 14.0 0.5 1.8 1 0 0 1 1 1 0 zinc-ribbon DUF1936 PF09151.10 gi|389849324|ref|YP_006351560.1| - 0.064 13.2 3.6 16 5.5 0.2 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF1936) DUF3944 PF13099.6 gi|389849324|ref|YP_006351560.1| - 0.11 12.3 7.5 21 5.1 0.0 4.6 4 0 0 4 4 4 0 Domain of unknown function (DUF3944) DUF543 PF04418.12 gi|389849326|ref|YP_006351562.1| - 2.6 8.1 11.8 7 6.7 0.5 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF543) CMD PF02627.20 gi|389849328|ref|YP_006351564.1| - 1.5e-11 44.2 0.2 3.7e-10 39.7 0.1 2.2 1 1 2 3 3 3 2 Carboxymuconolactone decarboxylase family TauE PF01925.19 gi|389849329|ref|YP_006351565.1| - 4.7e-35 121.3 23.6 5.4e-35 121.1 23.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE FA_desaturase PF00487.24 gi|389849329|ref|YP_006351565.1| - 0.0073 16.2 4.1 0.2 11.4 0.1 2.1 2 0 0 2 2 2 2 Fatty acid desaturase adh_short_C2 PF13561.6 gi|389849330|ref|YP_006351566.1| - 2.1e-39 135.5 2.0 3.5e-39 134.8 2.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389849330|ref|YP_006351566.1| - 1.3e-33 116.1 1.0 1.6e-33 115.8 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389849330|ref|YP_006351566.1| - 1.8e-05 24.8 1.5 3.8e-05 23.7 1.5 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389849330|ref|YP_006351566.1| - 0.00045 19.7 0.3 0.00085 18.9 0.3 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|389849330|ref|YP_006351566.1| - 0.0038 16.7 0.1 0.0054 16.2 0.1 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase ADH_zinc_N PF00107.26 gi|389849330|ref|YP_006351566.1| - 0.0061 16.5 1.2 0.012 15.6 1.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|389849330|ref|YP_006351566.1| - 0.057 13.0 0.3 0.098 12.2 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RmlD_sub_bind PF04321.17 gi|389849330|ref|YP_006351566.1| - 0.27 10.3 2.8 0.37 9.8 2.8 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|389849330|ref|YP_006351566.1| - 1.7 8.5 4.7 27 4.6 4.7 2.2 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patatin PF01734.22 gi|389849331|ref|YP_006351567.1| - 7.8e-17 62.1 0.3 6.1e-16 59.2 0.3 2.0 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.14 gi|389849332|ref|YP_006351568.1| - 2.1e-53 181.5 2.2 3.1e-53 180.9 2.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|389849332|ref|YP_006351568.1| - 2e-26 92.4 0.4 4e-26 91.4 0.4 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|389849332|ref|YP_006351568.1| - 5.5e-16 58.9 5.2 6.7e-15 55.4 0.1 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389849332|ref|YP_006351568.1| - 8.1e-12 45.0 0.7 9.8e-11 41.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|389849332|ref|YP_006351568.1| - 1e-06 28.1 3.3 3.3e-06 26.4 3.3 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|389849332|ref|YP_006351568.1| - 1.1e-05 24.8 0.0 0.0013 18.0 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 gi|389849332|ref|YP_006351568.1| - 0.00014 21.3 1.7 0.00019 20.9 0.3 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|389849332|ref|YP_006351568.1| - 0.00026 20.9 0.5 0.38 10.6 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|389849332|ref|YP_006351568.1| - 0.0022 17.2 0.4 0.0022 17.2 0.4 2.2 2 1 1 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|389849332|ref|YP_006351568.1| - 0.019 13.7 0.5 7.1 5.2 0.2 3.0 3 0 0 3 3 3 0 HI0933-like protein DUF2647 PF10839.8 gi|389849332|ref|YP_006351568.1| - 0.051 13.6 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) XdhC_C PF13478.6 gi|389849332|ref|YP_006351568.1| - 0.17 12.4 1.4 8.6 6.9 0.1 3.4 3 1 0 3 3 3 0 XdhC Rossmann domain MarR_2 PF12802.7 gi|389849333|ref|YP_006351569.1| - 1.7e-09 37.4 0.0 5.5e-09 35.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389849333|ref|YP_006351569.1| - 1.4e-08 34.4 0.3 3.8e-08 33.0 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|389849333|ref|YP_006351569.1| - 2.4e-07 30.5 0.0 3.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389849333|ref|YP_006351569.1| - 2.3e-06 27.5 0.1 4.6e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|389849333|ref|YP_006351569.1| - 7.2e-06 25.8 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|389849333|ref|YP_006351569.1| - 2.3e-05 23.9 0.0 4.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|389849333|ref|YP_006351569.1| - 2.5e-05 24.7 0.0 0.00019 21.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|389849333|ref|YP_006351569.1| - 7.6e-05 22.6 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain HTH_5 PF01022.20 gi|389849333|ref|YP_006351569.1| - 9.5e-05 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389849333|ref|YP_006351569.1| - 0.00029 20.8 0.0 0.00049 20.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|389849333|ref|YP_006351569.1| - 0.0035 17.3 0.0 0.0062 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|389849333|ref|YP_006351569.1| - 0.0058 16.6 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_31 PF13560.6 gi|389849333|ref|YP_006351569.1| - 0.03 14.7 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389849333|ref|YP_006351569.1| - 0.03 14.5 0.1 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TnsD PF15978.5 gi|389849333|ref|YP_006351569.1| - 0.037 13.0 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_DeoR PF08220.12 gi|389849333|ref|YP_006351569.1| - 0.071 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|389849333|ref|YP_006351569.1| - 0.077 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_CodY PF08222.11 gi|389849333|ref|YP_006351569.1| - 0.077 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain AbiEi_4 PF13338.6 gi|389849333|ref|YP_006351569.1| - 0.099 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin GntR PF00392.21 gi|389849333|ref|YP_006351569.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RP-C PF03428.13 gi|389849333|ref|YP_006351569.1| - 0.2 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain TAT_signal PF10518.9 gi|389849335|ref|YP_006351571.1| - 0.11 12.4 2.0 0.21 11.5 2.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MOSC PF03473.17 gi|389849336|ref|YP_006351572.1| - 4.1e-26 91.5 0.0 1.2e-25 90.1 0.0 1.7 2 0 0 2 2 2 1 MOSC domain 3-alpha PF03475.14 gi|389849336|ref|YP_006351572.1| - 3e-09 36.6 0.5 6.3e-09 35.6 0.5 1.6 1 0 0 1 1 1 1 3-alpha domain Troponin PF00992.20 gi|389849337|ref|YP_006351573.1| - 0.062 13.6 0.0 0.089 13.1 0.0 1.2 1 0 0 1 1 1 0 Troponin Beta_helix PF13229.6 gi|389849338|ref|YP_006351574.1| - 1.9e-32 112.3 45.5 7.4e-14 51.9 8.2 5.4 3 1 2 5 5 5 4 Right handed beta helix region NosD PF05048.13 gi|389849338|ref|YP_006351574.1| - 3.3e-20 72.4 27.0 8.1e-07 28.6 1.2 5.3 3 1 2 5 5 5 4 Periplasmic copper-binding protein (NosD) Peripla_BP_2 PF01497.18 gi|389849339|ref|YP_006351575.1| - 2.9e-16 59.8 0.0 4.1e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|389849339|ref|YP_006351575.1| - 0.00015 21.4 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M10 PF00413.24 gi|389849341|ref|YP_006351577.1| - 2.3e-06 27.6 2.8 0.0003 20.7 0.2 3.0 2 1 0 2 2 2 2 Matrixin Reprolysin_3 PF13582.6 gi|389849341|ref|YP_006351577.1| - 0.012 16.2 0.0 0.023 15.2 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|389849341|ref|YP_006351577.1| - 0.019 14.6 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Thiol_cytolys_C PF17440.2 gi|389849341|ref|YP_006351577.1| - 0.022 14.9 2.7 0.055 13.7 2.7 1.6 1 0 0 1 1 1 0 Thiol-activated cytolysin beta sandwich domain Astacin PF01400.24 gi|389849341|ref|YP_006351577.1| - 0.053 13.1 0.7 0.42 10.2 0.3 2.5 2 1 0 2 2 2 0 Astacin (Peptidase family M12A) Reprolysin_2 PF13574.6 gi|389849341|ref|YP_006351577.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like MacB_PCD PF12704.7 gi|389849342|ref|YP_006351578.1| - 4.6e-13 50.0 6.2 4.6e-13 50.0 6.2 2.1 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389849342|ref|YP_006351578.1| - 5.6e-12 46.0 0.6 5.6e-12 46.0 0.6 2.9 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|389849342|ref|YP_006351578.1| - 0.002 17.0 0.6 0.002 17.0 0.6 1.7 2 0 0 2 2 2 1 Lipopolysaccharide export system permease LptF/LptG OppC_N PF12911.7 gi|389849342|ref|YP_006351578.1| - 0.12 12.4 0.2 0.39 10.7 0.2 1.9 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF4118 PF13493.6 gi|389849342|ref|YP_006351578.1| - 0.97 9.3 8.9 0.2 11.5 4.7 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4118) ABC_tran PF00005.27 gi|389849343|ref|YP_006351579.1| - 3.2e-39 134.6 0.0 8.9e-39 133.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389849343|ref|YP_006351579.1| - 1.6e-06 28.1 0.3 0.00088 19.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389849343|ref|YP_006351579.1| - 9.2e-06 25.3 0.1 1.7e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389849343|ref|YP_006351579.1| - 1.3e-05 24.7 0.1 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389849343|ref|YP_006351579.1| - 5.8e-05 23.5 0.1 0.0001 22.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389849343|ref|YP_006351579.1| - 0.00018 21.5 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|389849343|ref|YP_006351579.1| - 0.00029 21.4 0.0 0.00051 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389849343|ref|YP_006351579.1| - 0.0021 18.3 0.2 0.028 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|389849343|ref|YP_006351579.1| - 0.0042 16.8 0.3 0.036 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|389849343|ref|YP_006351579.1| - 0.01 15.6 0.0 0.026 14.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|389849343|ref|YP_006351579.1| - 0.01 16.0 0.8 0.026 14.7 0.8 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|389849343|ref|YP_006351579.1| - 0.019 15.0 3.0 0.036 14.2 0.5 2.4 2 1 1 3 3 3 0 50S ribosome-binding GTPase AAA_10 PF12846.7 gi|389849343|ref|YP_006351579.1| - 0.021 13.8 0.0 2.6 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.6 gi|389849343|ref|YP_006351579.1| - 0.032 13.8 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|389849343|ref|YP_006351579.1| - 0.044 12.8 0.0 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|389849343|ref|YP_006351579.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_15 PF13175.6 gi|389849343|ref|YP_006351579.1| - 0.073 12.8 0.0 0.089 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|389849343|ref|YP_006351579.1| - 0.085 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|389849343|ref|YP_006351579.1| - 0.093 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|389849343|ref|YP_006351579.1| - 0.11 12.6 0.0 0.75 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|389849343|ref|YP_006351579.1| - 0.13 12.3 0.5 0.5 10.4 0.1 1.9 2 0 0 2 2 2 0 Dynamin family NB-ARC PF00931.22 gi|389849343|ref|YP_006351579.1| - 0.18 11.0 0.0 0.31 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|389849343|ref|YP_006351579.1| - 0.31 10.6 1.7 0.34 10.5 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CARDB PF07705.11 gi|389849344|ref|YP_006351580.1| - 2.2e-07 31.1 9.8 0.00062 20.0 0.1 3.5 3 1 0 3 3 3 2 CARDB Transglut_C PF00927.22 gi|389849344|ref|YP_006351580.1| - 1.8e-05 24.8 0.0 0.013 15.7 0.0 2.5 1 1 1 2 2 2 2 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|389849344|ref|YP_006351580.1| - 0.00037 20.7 1.2 1.5 9.1 0.2 3.2 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|389849344|ref|YP_006351580.1| - 0.0085 16.4 4.2 0.75 10.1 3.5 3.7 1 1 1 2 2 2 1 Domain of unknown function DUF11 CBM_6 PF03422.15 gi|389849344|ref|YP_006351580.1| - 0.021 15.1 2.7 0.47 10.8 0.5 3.1 1 1 1 2 2 2 0 Carbohydrate binding module (family 6) SKG6 PF08693.10 gi|389849344|ref|YP_006351580.1| - 2.1 7.8 5.6 5.1 6.6 5.6 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain AAA_31 PF13614.6 gi|389849346|ref|YP_006351582.1| - 8.3e-22 77.9 0.0 1.2e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389849346|ref|YP_006351582.1| - 3e-14 53.2 0.0 4.4e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|389849346|ref|YP_006351582.1| - 1.1e-08 34.8 0.1 0.0029 16.9 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|389849346|ref|YP_006351582.1| - 4e-05 23.2 0.1 0.00042 19.9 0.1 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|389849346|ref|YP_006351582.1| - 0.0062 16.0 0.1 0.018 14.5 0.0 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|389849346|ref|YP_006351582.1| - 0.018 14.3 0.3 0.035 13.3 0.1 1.5 2 0 0 2 2 2 0 Anion-transporting ATPase DDE_Tnp_IS240 PF13610.6 gi|389849347|ref|YP_006351583.1| - 7.1e-19 68.4 0.0 9.7e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389849347|ref|YP_006351583.1| - 1.1e-07 31.6 0.4 1.8e-07 30.9 0.4 1.4 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389849347|ref|YP_006351583.1| - 0.03 14.4 0.0 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2384) DDE_Tnp_1 PF01609.21 gi|389849347|ref|YP_006351583.1| - 0.038 13.6 3.5 1.4 8.6 0.9 2.1 1 1 1 2 2 2 0 Transposase DDE domain NIR_SIR PF01077.22 gi|389849349|ref|YP_006351585.1| - 6.4e-46 155.7 0.0 5.1e-35 120.3 0.0 2.6 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|389849349|ref|YP_006351585.1| - 8.9e-29 99.2 0.1 4.4e-13 48.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain zf-HC2 PF13490.6 gi|389849349|ref|YP_006351585.1| - 0.019 15.2 0.3 5.3 7.4 0.0 3.0 2 0 0 2 2 2 0 Putative zinc-finger DGC PF08859.11 gi|389849349|ref|YP_006351585.1| - 0.031 14.4 0.1 1.9 8.6 0.0 2.7 3 0 0 3 3 3 0 DGC domain FrhB_FdhB_C PF04432.13 gi|389849350|ref|YP_006351586.1| - 3.4e-28 98.4 0.0 6.8e-28 97.5 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|389849350|ref|YP_006351586.1| - 2.2e-21 75.8 0.0 4.1e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|389849350|ref|YP_006351586.1| - 1.6e-09 37.7 5.2 1.6e-09 37.7 5.2 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389849350|ref|YP_006351586.1| - 9.5e-09 34.7 17.2 2.3e-06 27.2 3.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|389849350|ref|YP_006351586.1| - 3.3e-08 33.5 5.6 3.3e-08 33.5 5.6 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389849350|ref|YP_006351586.1| - 3.6e-07 30.2 6.6 3.6e-07 30.2 6.6 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|389849350|ref|YP_006351586.1| - 1.6e-05 25.7 13.3 0.062 14.2 1.6 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|389849350|ref|YP_006351586.1| - 1.8e-05 25.2 1.1 0.00054 20.5 0.0 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|389849350|ref|YP_006351586.1| - 4.6e-05 23.3 3.4 4.6e-05 23.3 3.4 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|389849350|ref|YP_006351586.1| - 0.00015 22.3 8.1 0.017 15.7 0.2 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|389849350|ref|YP_006351586.1| - 0.00017 21.5 3.3 0.00017 21.5 3.3 3.8 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|389849350|ref|YP_006351586.1| - 0.0013 18.9 2.3 0.0035 17.5 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|389849350|ref|YP_006351586.1| - 0.0023 18.3 4.6 0.0023 18.3 4.6 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|389849350|ref|YP_006351586.1| - 0.034 14.7 13.2 0.38 11.3 3.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TonB_2 PF13103.6 gi|389849350|ref|YP_006351586.1| - 0.089 13.0 0.1 0.29 11.4 0.0 1.9 2 0 0 2 2 1 0 TonB C terminal Fer4_15 PF13459.6 gi|389849350|ref|YP_006351586.1| - 0.094 13.5 10.5 0.18 12.6 1.2 3.1 1 1 1 2 2 2 0 4Fe-4S single cluster domain NUDIX PF00293.28 gi|389849351|ref|YP_006351587.1| - 1.8e-18 66.8 0.2 2.4e-18 66.4 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain DUF1317 PF07026.11 gi|389849351|ref|YP_006351587.1| - 0.081 12.7 1.3 0.1 12.5 0.0 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1317) DoxX PF07681.12 gi|389849352|ref|YP_006351588.1| - 3.6e-12 46.7 11.2 3.6e-12 46.7 11.2 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|389849352|ref|YP_006351588.1| - 9.6e-05 22.6 0.5 0.00074 19.7 0.1 1.9 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.15 gi|389849352|ref|YP_006351588.1| - 0.0007 19.3 0.2 0.0013 18.4 0.2 1.5 1 1 0 1 1 1 1 SURF4 family DUF4064 PF13273.6 gi|389849352|ref|YP_006351588.1| - 0.0031 17.8 3.4 0.0031 17.8 3.4 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) DoxX_2 PF13564.6 gi|389849352|ref|YP_006351588.1| - 0.02 15.0 9.8 0.029 14.5 9.5 1.5 1 1 0 1 1 1 0 DoxX-like family Abhydrolase_2 PF02230.16 gi|389849354|ref|YP_006351590.1| - 9.8e-21 74.5 0.0 5.3e-20 72.2 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|389849354|ref|YP_006351590.1| - 5.6e-09 35.6 0.1 3e-05 23.4 0.1 3.0 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|389849354|ref|YP_006351590.1| - 2.2e-05 25.2 2.7 8.5e-05 23.3 2.7 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|389849354|ref|YP_006351590.1| - 0.00015 21.4 0.0 0.00027 20.5 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|389849354|ref|YP_006351590.1| - 0.00041 20.1 0.0 0.0028 17.3 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|389849354|ref|YP_006351590.1| - 0.046 13.6 0.0 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|389849354|ref|YP_006351590.1| - 0.053 13.0 0.0 2.1 7.8 0.0 2.5 2 1 1 3 3 3 0 Prolyl oligopeptidase family FSH1 PF03959.13 gi|389849354|ref|YP_006351590.1| - 0.2 11.3 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Glyoxalase PF00903.25 gi|389849355|ref|YP_006351591.1| - 9.7e-31 106.6 0.8 6.1e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389849355|ref|YP_006351591.1| - 0.0099 16.1 0.0 4.5 7.6 0.0 3.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HicA_toxin PF07927.12 gi|389849355|ref|YP_006351591.1| - 0.016 15.2 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Glyoxalase PF00903.25 gi|389849356|ref|YP_006351592.1| - 4.9e-11 42.9 0.4 6.7e-11 42.5 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|389849356|ref|YP_006351592.1| - 2.8e-05 24.3 0.0 5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HxlR PF01638.17 gi|389849357|ref|YP_006351593.1| - 1.8e-20 72.6 0.0 2.2e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|389849357|ref|YP_006351593.1| - 3.8e-06 27.0 0.0 5.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|389849357|ref|YP_006351593.1| - 9.9e-05 22.2 0.1 0.00014 21.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|389849357|ref|YP_006351593.1| - 0.00075 19.3 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389849357|ref|YP_006351593.1| - 0.0017 18.8 0.1 0.0026 18.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|389849357|ref|YP_006351593.1| - 0.0076 16.3 0.0 0.0093 16.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation MarR PF01047.22 gi|389849357|ref|YP_006351593.1| - 0.0078 16.1 0.1 0.014 15.3 0.1 1.5 1 1 0 1 1 1 1 MarR family PadR PF03551.14 gi|389849357|ref|YP_006351593.1| - 0.011 15.7 0.1 0.017 15.1 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FemAB PF02388.16 gi|389849357|ref|YP_006351593.1| - 0.016 14.1 0.0 0.13 11.1 0.0 1.9 1 1 1 2 2 2 0 FemAB family TrmB PF01978.19 gi|389849357|ref|YP_006351593.1| - 0.041 13.8 0.1 0.06 13.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|389849357|ref|YP_006351593.1| - 0.05 13.4 0.1 0.077 12.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_43 PF09904.9 gi|389849357|ref|YP_006351593.1| - 0.054 13.4 0.0 0.077 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|389849357|ref|YP_006351593.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389849357|ref|YP_006351593.1| - 0.094 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Isochorismatase PF00857.20 gi|389849358|ref|YP_006351594.1| - 1.9e-23 83.5 0.0 3.6e-23 82.6 0.0 1.4 1 1 0 1 1 1 1 Isochorismatase family Isochorismatase PF00857.20 gi|389849359|ref|YP_006351595.1| - 4.4e-29 101.9 0.3 1.1e-28 100.6 0.3 1.7 1 1 0 1 1 1 1 Isochorismatase family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/all.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/all.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:50:31 2019 # [ok]